ada6da3eddf4361bd57b929e6161f3ed8318c8023d498ae699912f514e1e7810  README.md
24ee329367978f3c1ff849d1d53516f68459ce24fd668430de0a1d716e6c8225  figure_scripts/README.md
8dedd3fa6e6536bf6c8850c24056eecdceba5257fd58aaadf325892a470385ad  figure_scripts/_style.py
5235a85f069dec8b1583ce47b98b2a38493cb71b4cc5b15d455729945104f2ad  figure_scripts/figgen_figure1_compact_overview_v208.py
eddfdfee6b3db38174c135c36629eca516b4d952f5e507e3e710fdb5c8a8ce41  figure_scripts/figgen_figure1_v193.py
6d50bb4b27ecd206a054edd67961a75000e81812e7d15e15edc19d36738400be  figure_scripts/figgen_figure2_v193.py
e56caa1a65b34d0034a8c8acc4fba957c5fd2c474fb16a4be6e6008492b514be  figure_scripts/figgen_figure3_v193.py
42b89cc17accab6d4ebb0d51ffcbd89b08190f79488201c1fc436481522aa7cc  figure_scripts/figgen_figure4_v193.py
868a029471dc7efd9a915c0440b123e07f34561ac6f3310b5a0e3e75a906e6cd  figure_scripts/figgen_figure5_v199.py
99b853ff9e0781b4b646542863cdd32f749960817ee3b77a1786dc436438b208  paper/figures/figure1_compact_overview.pdf
7eb6a71f68c7e2c300d8e799f864ff01eea7f8317a5a520305dd835bf8c4f452  paper/figures/figure1_framework_overview.pdf
93c057ffbb38eacea86047a1af1b5bd8b4d024a3096a28a98a601a73da00c556  paper/figures/figure2_metric_orientation_analysis.pdf
fc7707a4c9a66f0c3183263b93edddaab120fa786bdce4874933b83951a2fbb6  paper/figures/figure3_main_benchmark_reconciliation.pdf
c60835478bbd52ef303e08f4bdf72d32806025b2cc18280bde8c778a661b6914  paper/figures/figure4_secondary_reconstructed_protocol.pdf
c0d9bcb5cc7cb3fd2aa6b739cfe33c3016eedbc10259196de4125470c1d1243e  paper/figures/figure5_real_gene_level_scatter.pdf
de061600594a871a25c59039e09937b67c7d1e2dcb651afe9b1e4fc9b05d4577  paper/main.bbl
5ebd731c61022b3c837867e5e284bfb1313d9d5d987e49ec21b2b36a46950852  paper/main.tex
d854fe9fc7089b7b9d767cd809cd9d8b02c1eb789afe6d0cf10c12ea6997f59e  paper/references.bib
68c0e07c7e93419e5948fb22c923a68f8d22b3c23834b9285c46e8e7b60ff093  paper/sections/abstract.tex
c702a995eca23189b469d7960fae3dab95c190066eb0ee80b937ceebdfed17e6  paper/sections/additional_metric_details.tex
38c45abc658808f42a1c72c58e29fb2f1943c1a037218c32a868dbf5d1aa710a  paper/sections/appendix.tex
8cfb1ecf9346c5f3994635a4a4a2fb603b2f9e4aa1da65bcc149a2dd50b051e4  paper/sections/benchmark_protocol.tex
c60cc519cd5a773c1b4ac60087b93a0e99d24f4707dbbcc594c79d88f5f6d6c5  paper/sections/conclusion.tex
eb97b99950edfdf0b5b76cfc4cbe89cad56864198d3183c4da0f9540ce76eb5c  paper/sections/data_code_availability.tex
c018e8a7b18b29a9029aaece99e864b04d8e170797a556f12cbe409720baad41  paper/sections/discussion.tex
d0a97149bcc3e969dd1ce4f0487c30d8912ef8a3b99cda048239c087bc26df54  paper/sections/framework.tex
9a865fd48e90d7108935cbbbc3414ab0a7150b550ca5301b05273aef7968ea85  paper/sections/introduction.tex
858d19aa6cbc8bce6489c3128c08ab0c6835563c6f4582be5b95fed803328348  paper/sections/limitations.tex
84ab474e2f14393801c35c83e544c086dd6b55389c5126a594384c479bd2b50a  paper/sections/metrics.tex
bcb16864ca667e7075fd9c714823e38cad3b8f1c24bede3f81be9d6d0523054c  paper/sections/problem_setup.tex
06b62176df38b3e776547f1953235bb74cda138a403fc9fd3c23f0ed7fdab3ff  paper/sections/related_work.tex
882689291e3073e821812ef8328f9a6459171cc43643fb4912d72e9a190d16d8  paper/sections/reproducibility.tex
448bc1992f5882a8ddef8e0f1f6547857d29fedae14a0c9018863449cefd5e7a  paper/sections/results.tex
57842265cea016e1136f1853d0c7812ecb1051001c216265ad081d0c91d591c3  paper/sections/scope_of_inference.tex
3d310de2b7d0d30419bdddbbe1a8fa81ba170d7c52e1eee7fc36515d45c42e44  paper/sections/secondary_analysis.tex
9628bef58b0e99d1a43ea8a3c37b40b50e9307ecc30f77febe66b32c41f99df4  paper/tables/appendix_table_a1_additional_metric_quantities.tex
e6b5350deb09b81c2bcba0f66defdbc4bf0ccbd54933b4d54950101a04196e6f  paper/tables/appendix_table_a2_secondary_evidence_interpretation.tex
82ce582e60b6e0bf5ffebbab7c9a3f64b5b8c7c3adba1045f324bde4565d46c9  paper/tables/appendix_table_a3_tcpe_system_artifact_map.tex
8408b2b16ec86cf86e0ee11a89ba73e35c568c178416ccad32437eca0b2b5526  paper/tables/table1_main_benchmark_result.tex
a9f3e2fd7a32963a68cdbd366de8a775aa47b171659385be27ea39c70851afd7  paper/tables/table2_metric_orientation_seed_aggregation.tex
c1cc3860949e211217540810be91cf3392678f8d2bf8c80144ee0ba2fdfede29  paper/tables/table3_secondary_analysis.tex
7670363b51ab97d9a8a8081d8e6b857b69186cff3a9a2732c2ff278aa5f3d9bb  reports/tcpe_model_system_source_manifest_v208.tsv
