Pop Model SNP Chromosome Position Coef(scaled) pval MAC_6RW MAC_2RW MAC_6RS MAC_2RS MAF_6RW MAF_2RW MAF_6RS MAF_2RS PVE_6RW PVE_2RW PVE_6RS PVE_2RS Coef_6RW(scaled) Coef_2RW(scaled) Coef_6RS(scaled) Coef_2RS(scaled) Sign test Gene Annotation Genic / Intergenic Distance to gene 6RW:2RW AET SNP3085 3H 551523213 -7.41 3.3E-06 541 665 1 2671 0.47 0.20 <0.01 0.37 8.7 3.5 - - -3.62 -3.63 - - - HORVU.MOREX.r3.3HG0303020 nuclease genic 0 bp 6RW:2RW AET SNP6010 3H 551666614 -7.36 3.8E-06 543 663 1 2664 0.47 0.20 <0.01 0.37 9.0 3.3 - - -3.71 -3.52 - - - HORVU.MOREX.r3.3HG0303070 Ras-related protein Rab-8A genic 0 bp 6RW:2RW AET SNP3490 5H 6907205 -7.58 6-4E-07 238 145 117 1 0.20 0.04 0.09 <0.01 6.4 2.9 - - 3.79 4.01 - - - HORVU.MOREX.r3.5HG0422600 ADP-ribosylation factor genic 0 bp 6RW:2RW DET,SCT SNP7621 5H 467301344 6.75 1.1E-06 34 1055 38 3592 0.03 0.32 0.03 0..49 8.9 0.1 - - 5.09 -0.54 - - Different sign HORVU.MOREX.r3.5HG0487770 GRAM-containing/ABA-responsive protein genic 0 bp 6RW:2RW AET SNP5003 6H 8185797 -8.20 5.2E-08 251 1328 0 59 0.22 0.40 0 <0.01 6.8 12.5 - - -2.09 -4.96 - - - HORVU.MOREX.r3.6HG0541400 Ubiquitin-conjugating enzyme E2, putative genic 0 bp 6RW:2RW DET SNP6143 6H 9079863 5.63 3.8E-06 428 1281 393 137 0.37 0.39 0.31 0.02 <0.1 16.2 - - -0.32 -6.60 - - Same sign HORVU.MOREX.r3.6HG0541910 Protein kinase-like genic 0 bp 6RW:2RW AET SNP6460 6H 9409688 -8.22 1.6E-07 172 1306 395 18 0.15 0.40 0.31 <0.01 <0.1 16.5 - - -0.34 -6.69 - - - HORVU.MOREX.r3.6HG0542020 NBS-LRR resistance-like protein intergenic 550 bp downstream 6RW:2RW DET SNP6460 6H 9409688 7.02 1.5E-08 172 1306 395 18 0.15 0.40 0.31 <0.01 <0.1 16.5 - - -0.34 -6.69 - - Same sign HORVU.MOREX.r3.6HG0542020 NBS-LRR resistance-like protein intergenic 550 bp downstream 6RW:2RW AET SNP11275 6H 9839762 -7.44 1.4E-06 171 1004 153 223 0.15 0.31 0.12 0.03 2.2 4.1 - - -2.20 -3.91 - - - HORVU.MOREX.r3.6HG0542190 F-box domain containing protein intergenic 4322 bp upstream 6RW:2RW DET SNP9836 6H 10100689 5.99 8.2E-07 414 1519 0 227 0.36 0.46 0 0.03 0.2 23.2 - - -0.47 -7.14 - - Same sign HORVU.MOREX.r3.6HG0542310 Transmembrane protein genic 0 bp 6RW:2RW DET SNP2982 6H 11407986 -6.15 2.7E-06 255 1564 13 224 0.22 0.48 0.01 0.03 <0.1 16.2 - - -0.03 6.25 - - Same sign HORVU.MOREX.r3.6HG0542780 Methionine--tRNA ligase genic 0 bp 6RW:2RW DET SNP4404 6H 12209320 6.01 4.5E-06 254 1565 535 225 0.22 0.48 0.42 0.03 <0.1 11.3 - - -0.20 5.37 - - Same sign HORVU.MOREX.r3.6HG0542950 Pentatricopeptide repeat-containing protein genic 0 bp 6RW:2RW AET SNP12236 6H 356868076 -7.63 5.8E-07 349 1373 194 2810 0.30 0.42 0.15 0.39 15.1 1.3 - - -4.51 -1.38 - - - HORVU.MOREX.r3.6HG0593920 Sister chromatid cohesion protein PDS5 B-B genic 0 bp 6RW:2RW AET SNP6829 6H 359648732 7.94 7.0E-07 49 1384 104 2804 0.04 0.42 0.08 0.39 9.1 11.8 - - -4.11 -3.63 - - - HORVU.MOREX.r3.6HG0594230 Adenine phosphoribosyltransferase genic 0 bp 6RW:2RW AET SNP8278 6H 362339279 -7.73 1.2E-06 52 1382 104 2810 0.04 0.42 0.08 0.39 8.3 11.0 - - -4.05 -3.51 - - - HORVU.MOREX.r3.6HG0594590 SPla/RYanodine receptor (SPRY) domain protein genic 0 bp 6RW:2RW AET SNP11396 6H 369832150 -7.47 1.2E-06 339 1374 183 2845 0.29 0.42 0.15 0.39 15.6 3.2 - - -4.56 -2.13 - - - HORVU.MOREX.r3.6HG0595430 Protein ROOT HAIR DEFECTIVE 3 homolog genic 0 bp 6RW:2RW AET SNP4585 6H 370286909 -7.49 1.1E-06 339 1377 290 2245 0.29 0.42 0.23 0.31 15.7 2.3 - - -4.56 -2.13 - - - HORVU.MOREX.r3.6HG0595460 RmlC-like cupins superfamily protein genic 0 bp 6RW:2RW AET SNP4769 6H 377205391 7.89 5.3E-07 479 505 203 11 0.41 0.15 0.16 <0.01 14.5 4.2 - - 4.61 3.33 - - - HORVU.MOREX.r3.6HG0596480 Kinase family protein genic 0 bp 6RW:2RW AET SNP8401 6H 377513916 7.92 4.4E-07 480 504 203 2033 0.41 0.15 0.16 0.28 14.2 4.2 - - 4.65 3.33 - - - HORVU.MOREX.r3.6HG0596520 Helicase MOM1 genic 0 bp 6RW:2RW AET SNP1729 6H 382991499 7.52 3.1E-06 116 170 101 1974 0.10 0.05 0.08 0.27 8.5 5.6 - - 3.43 4.23 - - - HORVU.MOREX.r3.6HG0596930 Regulator of nonsense transcripts 2 genic 0 bp 6RW:2RW AET SNP11213 6H 385785304 7.62 2.3E-06 116 169 100 1972 0.10 0.05 0.08 0.27 8.6 5.8 - - 3.46 4.32 - - - HORVU.MOREX.r3.6HG0597350 Bifunctional uridylyltransferase/uridylyl-removing enzyme genic 0 bp 6RW:2RW AET SNP12195 6H 385787053 7.59 2.3E-06 113 167 101 1970 0.10 0.05 0.08 0.27 8.5 5.5 - - 3.55 4.20 - - - HORVU.MOREX.r3.6HG0597350 Bifunctional uridylyltransferase/uridylyl-removing enzyme genic 0 bp 6RW:2RW AET SNP8119 6H 385884685 7.47 3.6E-06 116 169 101 1971 0.10 0.05 0.08 0.27 8.5 5.6 - - 3.42 4.20 - - - HORVU.MOREX.r3.6HG0597360 SET domain-containing protein 9 genic 0 bp 6RW:2RW AET SNP4293 6H 386177094 7.40 4.4E-06 116 171 194 1978 0.10 0.05 0.15 0.27 8.3 5.4 - - 3.40 4.15 - - - HORVU.MOREX.r3.6HG0597400 Carboxypeptidase genic 0 bp 6RW:6RS AET SNP5929 2H 3757819 -6.91 2.1E-06 333 1054 494 236 0.29 0.32 0.39 0.03 1.4 - 12.0 - -1.71 - -5.20 - - HORVU.MOREX.r3.2HG0097220 phytanoyl-CoA dioxygenase (PhyH) family protein intergenic 1548 bp downstream 6RW:6RS AET SNP12436 2H 3758616 -8.54 5.4E-09 112 1038 500 225 0.10 0.32 0.40 0.03 2.4 - 16.0 - -2.70 - -5.84 - - HORVU.MOREX.r3.2HG0097230 Retrovirus-related Pol polyprotein from transposon TNT 1-94 intergenic 1678 bp upstream 6RW:6RS AET SNP13040 2H 4109951 -8.64 3.6E-09 115 1062 511 239 0.10 0.32 0.40 0.03 2.9 - 15.7 - -2.94 - -5.70 - - HORVU.MOREX.r3.2HG0097330 Laccase genic 0 bp 6RW:6RS AET SNP5891 2H 4217522 -8.63 3.9E-09 115 1050 514 293 0.10 0.32 0.41 0.04 2.9 - 15.3 - -2.94 - -5.68 - - HORVU.MOREX.r3.2HG0097350 Agmatine coumaroyltransferase-2 intergenic 236 bp downstream 6RW:6RS AET SNP198 2H 4437873 -8.55 5.2E-09 113 984 511 234 0.10 0.30 0.40 0.03 2.6 - 16.1 - -2.77 - -5.78 - - HORVU.MOREX.r3.2HG0097390 Inosine-5'-monophosphate dehydrogenase genic 0 bp 6RW:6RS AET SNP5977 2H 5077584 8.68 2.7E-09 148 21 390 1 0.13 <0.01 0.31 <0.01 0.3 - 31.4 - 0.87 - 7.80 - - HORVU.MOREX.r3.2HG0097600 Protein DA1-related 1 genic 0 bp 6RW:6RS DET SNP5977 2H 5077584 -6.95 3.9E-07 148 21 390 1 0.13 <0.01 0.31 <0.01 0.3 - 31.4 - 0.87 - 7.80 - Same sign HORVU.MOREX.r3.2HG0097600 Protein DA1-related 1 genic 0 bp 6RW:6RS AET SNP7243 2H 5088241 8.75 2.0E-09 148 21 386 6 0.13 <0.01 0.31 <0.01 0.3 - 31.9 - 0.87 - 7.86 - - HORVU.MOREX.r3.2HG0097610 Serine-rich 25 kDa antigen protein genic 0 bp 6RW:6RS DET SNP7243 2H 5088241 -7.01 3.0E-07 148 21 386 6 0.13 <0.01 0.31 <0.01 0.3 - 31.9 - 0.87 - 7.86 - Same sign HORVU.MOREX.r3.2HG0097610 Serine-rich 25 kDa antigen protein genic 0 bp 6RW:6RS AET SNP12258 2H 5088355 -8.98 4.4E-10 199 1189 398 2524 0.17 0.36 0.31 0.35 0.4 - 33.2 - -1.03 - -7.94 - - HORVU.MOREX.r3.2HG0097610 Serine-rich 25 kDa antigen protein genic 0 bp 6RW:6RS DET SNP12258 2H 5088355 6.93 6.2E-07 199 1189 398 2524 0.17 0.36 0.31 0.35 0.4 - 33.2 - -1.03 - -7.94 - Same sign HORVU.MOREX.r3.2HG0097610 Serine-rich 25 kDa antigen protein genic 0 bp 6RW:6RS AET SNP4564 2H 5121047 8.62 2.3E-09 228 1195 423 88 0.20 0.36 0.33 0.01 <0.1 - 34.4 - 0.31 - 8.30 - - HORVU.MOREX.r3.2HG0097640 Protein kinase genic 0 bp 6RW:6RS DET SNP4564 2H 5121047 -8.00 7.8E-09 228 1195 423 88 0.20 0.36 0.33 0.01 <0.1 - 34.4 - 0.31 - 8.30 - Same sign HORVU.MOREX.r3.2HG0097640 Protein kinase genic 0 bp 6RW:6RS AET SNP10088 2H 5789931 -6.84 2.0E-06 73 11 523 345 0.06 <0.01 0.41 0.05 1.8 - 10.9 - -2.47 - -4.37 - - HORVU.MOREX.r3.2HG0098120 transmembrane protein, putative (DUF594) genic 0 bp 6RW:6RS AET SNP12236 6H 356868076 -6.76 2.2E-06 349 1373 194 2810 0.30 0.42 0.15 0.39 15.0 - 6.1 - -4.39 - -2.38 - - HORVU.MOREX.r3.6HG0593920 Sister chromatid cohesion protein PDS5 B-B genic 0 bp 6RW:2RS AET SNP5809 3H 5281870 -7.37 1.9E-07 134 111 10 173 0.12 0.03 <0.01 0.02 1.4 - - 2.7 -2.04 - - -4.76 - HORVU.MOREX.r3.3HG0220900 Cellulose synthase-like protein genic 0 bp 6RW:2RS DET,SCT SNP12434 3H 6032885 11.72 1.2E-16 97 614 429 330 0.08 0.19 0.34 0.05 2.8 - - 9.2 2.79 - - -10.84 Different sign HORVU.MOREX.r3.3HG0221340 Glycine-rich domain-containing protein 2 genic 0 bp 6RW:2RS AET SNP4643 3H 6098759 -7.48 1.1E-07 107 854 570 950 0.09 0.26 0.45 0.13 0.5 - - 6.3 -1.11 - - -6.41 - HORVU.MOREX.r3.3HG0221440 Glycosyltransferase genic 0 bp 6RW:2RS AET SNP8371 3H 6257342 -7.54 9.0E-08 106 1435 586 939 0.09 0.44 0.46 0.13 0.8 - - 5.8 -1.44 - - -6.10 - HORVU.MOREX.r3.3HG0221450 UPF0358 protein BcerKBAB4_3775 intergenic 233 bp downstream 6RW:2RS AET SNP605 3H 6260961 -7.77 3.7E-08 106 1435 567 934 0.09 0.44 0.45 0.13 0.8 - - 5.7 -1.44 - - -6.04 - HORVU.MOREX.r3.3HG0221460 Glycosyltransferase genic 0 bp 6RW:2RS DET SNP1631 3H 8850348 6.53 4.0E-06 261 728 625 2916 0.22 0.22 0.50 0.40 <0.1 - - 6.7 0.15 - - -6.04 Same sign HORVU.MOREX.r3.3HG0222630 Protein ABCI7, chloroplastic genic 0 bp 6RW:2RS DET,SCT SNP12909 3H 9182498 7.27 2.8E-07 54 478 625 795 0.05 0.15 0.50 0.11 1.0 - - 4.2 1.80 - - -5.43 Different sign HORVU.MOREX.r3.3HG0222770 Ubiquitin-conjugating enzyme E2 genic 0 bp 6RW:2RS DET,SCT SNP301 3H 9182522 7.27 2.8E-07 54 495 625 795 0.05 0.15 0.50 0.11 1.0 - - 4.2 1.80 - - -5.43 Different sign HORVU.MOREX.r3.3HG0222770 Ubiquitin-conjugating enzyme E2 genic 0 bp 6RW:2RS DET,SCT SNP4803 5H 464498204 -6.89 1.1E-06 37 63 42 3635 0.03 0.02 0.03 0.50 8.0 - - 0.7 -4.90 - - 1.94 Different sign HORVU.MOREX.r3.5HG0487460 transcription factor, putative (Protein of unknown function, DUF547) genic 0 bp 6RW:2RS AET SNP7621 5H 467301344 7.97 1.8E-08 34 1055 38 3592 0.03 0.32 0.03 0.49 8.8 - - 1.4 4.95 - - 2.53 - HORVU.MOREX.r3.5HG0487770 GRAM-containing/ABA-responsive protein genic 0 bp 6RW:2RS AET SNP10020 5H 467409447 7.47 1.3E-07 33 1176 50 3573 0.03 0.36 0.04 0.49 8.8 - - 1.4 5.05 - - 2.46 - HORVU.MOREX.r3.5HG0487790 Cyclin family protein genic 0 bp 6RW:2RS DET,SCT SNP6839 5H 468392106 -7.35 2.1E-07 68 667 484 3402 0.06 0.20 0.38 0.47 3.4 - - 6.1 -2.71 - - 4.66 Different sign HORVU.MOREX.r3.5HG0488090 1,4-alpha-glucan branching enzyme GlgB genic 0 bp 6RW:2RS AET SNP2617 5H 468899311 8.38 3.3E-09 76 707 485 3359 0.06 0.22 0.38 0.46 3.3 - - 10.9 2.74 - - 6.10 - HORVU.MOREX.r3.5HG0488170 Homeobox protein, putative genic 0 bp 6RW:2RS AET SNP12233 5H 469057208 7.74 4.8E-08 70 707 23 3349 0.06 0.22 0.02 0.46 3.4 - - 8.3 2.70 - - 5.55 - HORVU.MOREX.r3.5HG0488200 Peroxidase genic 0 bp 6RW:2RS DET,SCT SNP9197 5H 470373463 -7.75 4.3E-08 47 45 0 52 0.04 0.01 0 0.01 14.1 - - <0.1 -5.53 - - 0.08 Different sign HORVU.MOREX.r3.5HG0488440 Succinate--CoA ligase [ADP-forming] subunit beta genic 0 bp 6RW:2RS DET,SCT SNP2590 5H 470442284 -7.51 1.1E-07 53 45 6 2965 0.05 0.01 <0.01 0.41 11.7 - - 0.5 -5.25 - - 1.22 Different sign HORVU.MOREX.r3.5HG0488450 Disease resistance protein (TIR-NBS-LRR class) family genic 0 bp 6RW:2RS AET SNP10870 5H 534458523 -6.55 3.4E-06 104 4 151 1540 0.09 <0.01 0.12 0.21 <0.1 - - 8.1 -0.26 - - -6.06 - HORVU.MOREX.r3.5HG0513360 E3 ubiquitin-protein ligase MARCH6 genic 0 bp 6RW:2RS AET SNP901 5H 535610053 -7.67 5.6E-08 66 0 31 1173 0.06 0 0.02 0.16 0.2 - - 10.6 -0.66 - -7.11 - HORVU.MOREX.r3.5HG0513720 Signal transducing adapter molecule 2 genic 0 bp 6RW:2RS AET SNP12215 6H 147649708 6.76 1.7E-06 234 369 15 24 0.20 0.11 0.01 <0.01 7.6 - - 1.2 2.87 - 3.78 - HORVU.MOREX.r3.6HG0573110 Fumarylacetoacetase genic 0 bp 6RW:2RS AET SNP9773 6H 148029713 6.84 1.2E-06 238 361 15 23 0.20 0.11 0.01 <0.01 7.9 - - 1.3 2.86 - 3.87 ¨ HORVU.MOREX.r3.6HG0573190 Outer envelope protein 80, chloroplastic genic 0 bp 6RW:2RS AET SNP5719 6H 148031060 6.84 1.2E-06 238 364 15 23 0.20 0.11 0.01 <0.01 7.9 - - 1.3 2.86 - - 3.87 - HORVU.MOREX.r3.6HG0573200 Zinc transporter genic 0 bp 6RW:2RS AET SNP8932 6H 151788280 6.65 2.5E-06 239 354 1 22 0.21 0.11 <0.01 <0.01 8.5 - - 1.2 3.00 - - 3.87 - HORVU.MOREX.r3.6HG0573590 Non-structural maintenance of chromosome element 4 genic 0 bp 6RW:2RS AET SNP12375 6H 358462574 6.49 4.1E-06 115 168 87 24 0.10 0.05 0.07 <0.01 8.2 - - 0.7 3.25 - - 3.23 - HORVU.MOREX.r3.6HG0594060 RNA-binding family protein, putative genic 0 bp 6RW:2RS AET SNP3939 6H 358462594 6.65 2.4E-06 115 175 87 26 0.10 0.05 0.07 <0.01 8.2 - - 0.8 3.25 - - 3.39 - HORVU.MOREX.r3.6HG0594060 RNA-binding family protein, putative genic 0 bp 2RW:6RS AET SNP5977 2H 5077584 8.20 9.4E-09 148 21 390 1 0.13 <0.01 0.31 <0.01 - <0.1 32.4 - - 0.36 7.93 - - HORVU.MOREX.r3.2HG0097600 Protein DA1-related 1 genic 0 bp 2RW:6RS DET SNP5977 2H 5077584 -7.67 4.4E-08 148 21 390 1 0.13 0.01 0.31 <0.01 - <0.1 32.4 - - 0.36 7.93 - Same sign HORVU.MOREX.r3.2HG0097600 Protein DA1-related 1 genic 0 bp 2RW:6RS AET SNP7243 2H 5088241 8.25 7.4E-09 148 21 386 6 0.13 <0.01 0.31 <0.01 - <0.1 32.9 - - 0.36 7.99 - - HORVU.MOREX.r3.2HG0097610 Serine-rich 25 kDa antigen protein genic 0 bp 2RW:6RS DET SNP7243 2H 5088241 -7.72 3.5E-08 148 21 386 6 0.13 <0.01 0.31 <0.01 - <0.1 32.9 - - 0.36 7.99 - Same sign HORVU.MOREX.r3.2HG0097610 Serine-rich 25 kDa antigen protein genic 0 bp 2RW:6RS AET SNP12258 2H 5088355 -8.31 6.9E-09 199 1189 398 2524 0.17 0.36 0.31 0.35 - <0.1 34.5 - - -0.45 -8.09 - - HORVU.MOREX.r3.2HG0097610 Serine-rich 25 kDa antigen protein genic 0 bp 2RW:6RS DET SNP12258 2H 5088355 7.86 1.7E-08 199 1189 398 2524 0.17 0.36 0.31 0.35 - <0.1 34.5 - - -0.45 -8.09 - Same sign HORVU.MOREX.r3.2HG0097610 Serine-rich 25 kDa antigen protein genic 0 bp 2RW:6RS AET SNP4564 2H 5121047 8.99 4.9E-10 228 1195 423 88 0.20 0.36 0.33 0.01 - 0.1 35.3 - - 0.52 8.40 - - HORVU.MOREX.r3.2HG0097640 Protein kinase genic 0 bp 2RW:6RS DET SNP4564 2H 5121047 -7.82 1.5E-08 228 1195 423 88 0.20 0.36 0.33 0.01 - 0.1 35.3 - - 0.52 8.40 - Same sign HORVU.MOREX.r3.2HG0097640 Protein kinase genic 0 bp 2RW:6RS AET SNP11460 6H 8564087 -9.07 1.8E-10 0 1420 461 169 0 0.43 0.36 0.02 - 39.7 <0.1 - - -8.74 0.27 - - HORVU.MOREX.r3.6HG0541580 Aspartate aminotransferase genic 0 bp 2RW:6RS DET SNP11460 6H 8564087 -9.56 1.0E-10 0 1420 461 169 0 0.43 0.36 0.02 - 39.7 <0.1 - - -8.74 0.27 - Same sign HORVU.MOREX.r3.6HG0541580 Aspartate aminotransferase genic 0 bp 2RW:6RS AET SNP6143 6H 9079863 -6.95 1.5E-06 428 1281 393 137 0.37 0.39 0.31 0.02 - 16.3 1.1 - - -6.56 -1.22 - - HORVU.MOREX.r3.6HG0541910 Protein kinase-like genic 0 bp 2RW:6RS AET SNP6460 6H 9409688 -8.41 6.1E-09 172 1306 395 18 0.15 0.40 0.31 <0.01 - 16.5 0.5 - - -6.59 -0.83 - - HORVU.MOREX.r3.6HG0542020 NBS-LRR resistance-like protein intergenic 550 bp downstream 2RW:6RS DET SNP6460 6H 9409688 -6.66 1.4E-06 172 1306 395 18 0.15 0.40 0.31 <0.01 - 16.5 0.5 - - -6.59 -0.83 - Same sign HORVU.MOREX.r3.6HG0542020 NBS-LRR resistance-like protein intergenic 550 bp downstream 2RW:6RS DET SNP2982 6H 11407986 6.94 8.6E-07 255 1564 13 224 0.22 0.48 0.01 0.03 - 16.4 0.2 - - 6.22 -0.80 - Same sign HORVU.MOREX.r3.6HG0542780 Methionine--tRNA ligase genic 0 bp 2RW:2RS DET,SCT SNP5809 3H 5281870 7.85 3.0E-08 134 111 10 173 0.12 0.03 <0.01 0.02 - 1.1 - 2.7 - 2.54 - -4.75 Different sign HORVU.MOREX.r3.3HG0220900 Cellulose synthase-like protein genic 0 bp 2RW:2RS AET SNP12434 3H 6032885 -6.60 3.0E-06 97 614 429 330 0.08 0.19 0.34 0.05 - 1.7 - 9.2 - 2.49 - -10.83 - HORVU.MOREX.r3.3HG0221340 Glycine-rich domain-containing protein 2 genic 0 bp 2RW:2RS DET,SCT SNP12434 3H 6032885 11.24 2.0E-15 97 614 429 330 0.08 0.19 0.34 0.05 - 1.7 - 9.2 - 2.49 - -10.83 Different sign HORVU.MOREX.r3.3HG0221340 Glycine-rich domain-containing protein 2 genic 0 bp 2RW:2RS AET SNP4643 3H 6098759 -6.77 1.6E-06 107 854 570 950 0.09 0.26 0.45 0.13 - <0.1 - 6.3 - -0.33 - -6.43 - HORVU.MOREX.r3.3HG0221440 Glycosyltransferase genic 0 bp 2RW:2RS AET SNP605 3H 6260961 -6.49 4.1E-06 106 1435 567 934 0.09 0.44 0.45 0.13 - <0.1 - 5.7 - -0.38 - -6.05 - HORVU.MOREX.r3.3HG0221460 Glycosyltransferase genic 0 bp 2RW:2RS AET SNP1631 3H 8850348 -6.50 4.2E-06 261 728 625 2916 0.22 0.22 0.50 0.40 - <0.1 - 6.7 - 0.10 - -6.04 - HORVU.MOREX.r3.3HG0222630 Protein ABCI7, chloroplastic genic 0 bp 2RW:2RS DET SNP12909 3H 9182498 6.81 1.6E-06 54 478 625 795 0.05 0.15 0.50 0.11 - 0.4 - 4.2 - 1.45 - -5.44 Same sign HORVU.MOREX.r3.3HG0222770 Ubiquitin-conjugating enzyme E2 genic 0 bp 2RW:2RS DET SNP301 3H 9182522 6.75 1.9E-06 54 495 625 795 0.05 0.15 0.50 0.11 - 0.4 - 4.2 - 1.45 - -5.44 Same sign HORVU.MOREX.r3.3HG0222770 Ubiquitin-conjugating enzyme E2 genic 0 bp 2RW:2RS AET SNP6839 5H 468392106 6.63 2.4E-06 68 667 484 3402 0.06 0.20 0.38 0.47 - 1.2 - 6.1 - 1.91 - 4.66 - HORVU.MOREX.r3.5HG0488090 1,4-alpha-glucan branching enzyme GlgB genic 0 bp 2RW:2RS DET SNP2617 5H 468899311 -6.53 3.9E-06 76 707 485 3359 0.07 0.22 0.38 0.46 - 0.1 - 11.0 - -0.61 - 6.14 Same sign HORVU.MOREX.r3.5HG0488170 Homeobox protein, putative genic 0 bp 2RW:2RS AET SNP12103 5H 469555931 -8.80 4.3E-10 2 1285 20 429 <0.01 0.39 0.02 0.06 - 0.3 - 6.0 - -0.88 - -8.00 - HORVU.MOREX.r3.5HG0488290 Ribosomal RNA small subunit methyltransferase F genic 0 bp 2RW:2RS DET SNP12103 5H 469555931 6.90 1.2E-06 2 1285 20 429 <0.01 0.39 0.02 0.06 - 0.3 - 6.0 - -0.88 - -8.00 Same sign HORVU.MOREX.r3.5HG0488290 Ribosomal RNA small subunit methyltransferase F genic 0 bp 2RW:2RS DET,SCT SNP913 5H 527206555 6.95 9.1E-07 383 884 21 317 0.33 0.27 0.02 0.04 - 2.2 - 2.5 - 2.03 - -4.93 Different sign HORVU.MOREX.r3.5HG0510760 Protein kinase genic 0 bp 2RW:2RS DET SNP5003 6H 8185797 -7.17 4.1E-07 251 1328 0 59 0.22 0.40 0 <0.01 - 12.4 - <0.1 - -4.90 - 1.21 Same sign HORVU.MOREX.r3.6HG0541400 Ubiquitin-conjugating enzyme E2, putative genic 0 bp 2RW:2RS DET SNP6275 6H 8478835 6.72 2.1E-06 270 1263 64 216 0.23 0.39 0.05 0.03 - 6.0 - 0.1 - 3.66 - -1.07 Same sign HORVU.MOREX.r3.6HG0541500 Mitochondrial transcription termination factor-like intergenic 1803 bp upstream 2RW:2RS DET SNP10684 6H 8500898 6.82 1.5E-06 256 1468 64 404 0.22 0.45 0.05 0.06 - 9.9 - 0.3 - 4.84 - -1.40 Same sign HORVU.MOREX.r3.6HG0541510 COPII coat assembly protein sec16 genic 0 bp 2RW:2RS AET SNP11460 6H 8564087 -10.86 1.7E-14 0 1420 461 169 0 0.43 0.37 0.02 - 40.0 - 0.2 - -8.75 - -1.47 - HORVU.MOREX.r3.6HG0541580 Aspartate aminotransferase genic 0 bp 2RW:2RS DET SNP11460 6H 8564087 -7.79 3.6E-08 0 1420 461 169 0 0.43 0.37 0.02 - 40.0 - 0.2 - -8.75 - -1.47 Same sign HORVU.MOREX.r3.6HG0541580 Aspartate aminotransferase genic 0 bp 2RW:2RS DET SNP6460 6H 9409688 -8.58 1.3E-09 172 1306 395 18 0.15 0.40 0.31 <0.01 - 16.6 - <0.1 - -6.59 - 1.04 Same sign HORVU.MOREX.r3.6HG0542020 NBS-LRR resistance-like protein intergenic 550 bp downstream 2RW:2RS AET SNP11275 6H 9839762 -6.93 9.3E-07 171 1004 153 223 0.15 0.31 0.12 0.03 - 5.0 - 0.3 - -4.24 - -1.63 - HORVU.MOREX.r3.6HG0542190 F-box domain containing protein intergenic 4322 bp upstream 2RW:2RS AET SNP9836 6H 10100689 -7.01 6.6E-07 414 1519 0 227 0.36 0.46 0 0.03 - 23.8 - <0.1 - -7.13 - -0.76 - HORVU.MOREX.r3.6HG0542310 Transmembrane protein genic 0 bp 2RW:2RS DET SNP2982 6H 11407986 7.06 5.9E-07 255 1564 13 224 0.22 0.48 0.01 0.03 - 16.4 - 0.1 - 6.21 - -0.96 Same sign HORVU.MOREX.r3.6HG0542780 Methionine--tRNA ligase genic 0 bp 2RW:2RS DET SNP4404 6H 12209320 6.98 8.0E-07 254 1565 535 225 0.22 0.48 0.42 0.03 - 11.4 - 0.1 - 5.32 - -1.01 Same sign HORVU.MOREX.r3.6HG0542950 Pentatricopeptide repeat-containing protein genic 0 bp 2RW:2RS AET SNP11054 6H 236475300 6.77 1.6E-06 133 169 87 22 0.11 0.05 0.07 <0.01 - 3.6 - 0.8 - 3.32 - 3.46 - HORVU.MOREX.r3.6HG0582910 Ankyrin repeat-containing protein genic 0 bp 2RW:2RS AET SNP8493 6H 285455407 6.96 8.3E-07 131 169 82 22 0.11 0.05 0.07 <0.01 - 4.0 - 0.8 - 3.50 - 3.46 - HORVU.MOREX.r3.6HG0586810 HAT transposon superfamily protein intergenic 2915 bp upstream 2RW:2RS AET SNP12375 6H 358462574 7.00 7.0E-07 115 168 87 24 0.10 0.05 0.07 <0.01 - 4.7 - 0.7 - 3.82 - 3.22 - HORVU.MOREX.r3.6HG0594060 RNA-binding family protein, putative genic 0 bp 2RW:2RS AET SNP3939 6H 358462594 6.82 1.3E-06 115 175 87 26 0.10 0.05 0.07 <0.01 - 4.0 - 0.8 - 3.63 - 3.39 - HORVU.MOREX.r3.6HG0594060 RNA-binding family protein, putative genic 0 bp 2RW:2RS AET SNP7455 6H 367033832 6.87 1.1E-06 450 166 95 24 0.39 0.05 0.08 <0.01 - 4.4 - 0.7 - 3.69 - 3.22 - HORVU.MOREX.r3.6HG0595060 Fibronectin type III domain-containing protein 3B intergenic 84 bp upstream 2RW:2RS AET SNP12599 6H 367871076 6.82 1.4E-06 115 169 84 25 0.10 0.05 0.07 <0.01 - 4.6 - 0.7 - 3.76 - 3.10 - HORVU.MOREX.r3.6HG0595200 Polyribonucleotide nucleotidyltransferase genic 0 bp 6RS:2RS DET SNP12436 2H 3758616 -6.48 2.5E-06 112 1038 500 225 0.10 0.32 0.40 0.03 - - 16.0 <0.1 - - -5.82 0.66 Same sign HORVU.MOREX.r3.2HG0097230 Retrovirus-related Pol polyprotein from transposon TNT 1-94 intergenic 1678 bp upstream 6RS:2RS AET SNP12258 2H 5088355 -8.10 1.6E-08 199 1189 398 2524 0.17 0.36 0.31 0.35 - - 34.1 <0.1 - - -8.03 -0.07 - HORVU.MOREX.r3.2HG0097610 Serine-rich 25 kDa antigen protein genic 0 bp 6RS:2RS DET SNP12258 2H 5088355 -7.96 1.2E-08 199 1189 398 2524 0.17 0.36 0.31 0.35 - - 34.1 <0.1 - - -8.03 -0.07 Same sign HORVU.MOREX.r3.2HG0097610 Serine-rich 25 kDa antigen protein genic 0 bp 6RS:2RS AET SNP4564 2H 5121047 8.03 1.4E-08 228 1195 423 88 0.20 0.36 0.33 0.01 - - 36.2 <0.1 - - 8.49 -0.47 - HORVU.MOREX.r3.2HG0097640 Protein kinase genic 0 bp 6RS:2RS DET SNP4564 2H 5121047 8.96 2.3E-10 228 1195 423 88 0.20 0.36 0.33 0.01 - - 36.2 <0.1 - - 8.49 -0.47 Same sign HORVU.MOREX.r3.2HG0097640 Protein kinase genic 0 bp 6RS:2RS AET SNP12434 3H 6032885 -9.19 1.1E-10 97 614 429 330 0.08 0.19 0.34 0.05 - - <0.1 6.8 - - -0.24 -8.95 - HORVU.MOREX.r3.3HG0221340 Glycine-rich domain-containing protein 2 genic 0 bp 6RS:2RS DET SNP12434 3H 6032885 8.71 5.7E-10 97 614 429 330 0.08 0.19 0.34 0.05 - - <0.1 6.8 - - -0.24 -8.95 Same sign HORVU.MOREX.r3.3HG0221340 Glycine-rich domain-containing protein 2 genic 0 bp 6RS:2RS AET SNP4643 3H 6098759 -7.43 3.7E-07 107 854 570 950 0.09 0.26 0.45 0.13 - - 0.6 5.9 - - -1.06 -6.36 - HORVU.MOREX.r3.3HG0221440 Glycosyltransferase genic 0 bp 6RS:2RS AET SNP8371 3H 6257342 -6.75 3.9E-06 106 1435 586 939 0.09 0.44 0.46 0.13 - - 0.3 5.5 - - -0.68 -6.07 - HORVU.MOREX.r3.3HG0221450 UPF0358 protein BcerKBAB4_3775 intergenic 233 bp downstream 6RS:2RS AET SNP605 3H 6260961 -7.28 6.4E-07 106 1435 567 934 0.09 0.44 0.45 0.13 - - 0.5 5.9 - - -0.95 -6.32 - HORVU.MOREX.r3.3HG0221460 Glycosyltransferase genic 0 bp 6RS:2RS DET SNP1631 3H 8850348 6.72 1.4E-06 261 728 625 2916 0.22 0.22 0.49 0.40 - - <0.1 6.8 - - 0.34 -6.39 Same sign HORVU.MOREX.r3.3HG0222630 Protein ABCI7, chloroplastic genic 0 bp 6RS:2RS AET SNP12103 5H 469555931 -7.39 2.3E-07 2 1285 20 429 <0.01 0.39 0.02 0.06 - - <0.1 5.9 - - 0.48 -7.87 - HORVU.MOREX.r3.5HG0488290 Ribosomal RNA small subunit methyltransferase F genic 0 bp 6RS:2RS DET SNP12103 5H 469555931 8.34 2.4E-09 2 1285 20 429 <0.01 0.39 0.02 0.06 - - <0.1 5.9 - - 0.48 -7.87 Same sign HORVU.MOREX.r3.5HG0488290 Ribosomal RNA small subunit methyltransferase F genic 0 bp 6RS:2RS AET SNP10870 5H 534458523 -7.30 5.2E-07 104 4 151 1540 0.08 <0.01 0.12 0.21 - - 0.6 8.6 - - -0.98 -6.32 - HORVU.MOREX.r3.5HG0513360 E3 ubiquitin-protein ligase MARCH6 genic 0 bp 6RS:2RS AET SNP901 5H 535610053 -8.12 1.1E-08 66 0 31 1173 0.06 0 0.02 0.16 - - 0.3 9.8 - - -1.13 7.00 - HORVU.MOREX.r3.5HG0513720 Signal transducing adapter molecule 2 genic 0 bp 6RS:2RS AET SNP9324 5H 536492802 -7.19 6.7E-07 1 0 27 2721 <0.01 0 0.02 0.37 - - 1.0 12.5 - - -1.54 -5.65 - HORVU.MOREX.r3.5HG0514110 F-box domain containing protein intergenic 2218 bp downstream 6RS:2RS AET SNP5972 5H 536730207 -6.98 1.4E-06 0 0 27 2718 0 0 0.02 0.37 - - 1.0 10.9 - - -1.52 -5.46 - HORVU.MOREX.r3.5HG0514190 Long-Chain Acyl-CoA Synthetase genic 0 bp 2R:6R DET SNP3635 5H 532483791 5.1 5.1E-06 93 14 10 2797 0.08 <0.01 <0.01 0.38 0.5 0.2 <0.1 3.8 - - - - Same sign HORVU.MOREX.r3.5HG0512800 Two-component response regulator genic 0 bp