SRF Supplementary Materials for Algorithms for Molecular Biology (AMB)

CONTENTS:

1. SRF_Technical_Reference.pdf
   Comprehensive technical documentation of the Structured Recomputation Framework architecture and analytical models.

2. benchmark_logs/
   Raw CSV logs from performance and determinism benchmarks across GCC and Clang compilers.
   - benchmark_log_gcc.csv: Primary performance metrics (Linux/GCC).
   - benchmark_log_clang.csv: Primary performance metrics (Linux/Clang).
   - determinism_log_1.csv: Extreme-scale validation trace.
   - determinism_log_2.csv: Memory-constrained stability trace.

3. analysis_scripts/
   Python 3 scripts used to generate scaling plots and analytical regime mappings.
   - plot_scaling.py: Memory and runtime scaling analysis.
   - plot_regimes.py: Transition boundary visualization.

4. CI_validation/
   Reports summarizing cross-compiler and cross-platform invariance validation results.

For the full reference implementation and source code, visit:
https://github.com/Sulkysubject37/SRF
