Chromosome	Start	Stop	Reference	Variant	Transcript	Transcript.Support.Level	Ensembl.Gene.ID	Variant.Type	Mutation	Protein.Position	Gene.Name	HGVSc	HGVSp	HLA.Allele	Peptide.Length	Sub.peptide.Position	Mutation.Position	MT.Epitope.Seq	WT.Epitope.Seq	Best.MT.Score.Method	Best.MT.Score	Corresponding.WT.Score	Corresponding.Fold.Change	Tumor.DNA.Depth	Tumor.DNA.VAF	Median.MT.Score	Median.WT.Score	Median.Fold.Change	NetMHC.WT.Score	NetMHC.MT.Score	NetMHCpan.WT.Score	NetMHCpan.MT.Score	SMM.WT.Score	SMM.MT.Score	SMMPMBEC.WT.Score	SMMPMBEC.MT.Score	Sample.Name	cterm_7mer_gravy_score	max_7mer_gravy_score	difficult_n_terminal_residue	c_terminal_cysteine	c_terminal_proline	cysteine_count	n_terminal_asparagine	asparagine_proline_bond_count	Callers	NumCallers	Tumor_AF	Tumor_DP	RNA_DP	RNA.alternative.count	RNA_AF	cytoBand	CNA_coordinates	Total_CN	Major_CN	Minor_CN	Purity	Ploidy	CNV_calling_comment	Multiplicity	CCF	Group	Sample_type
chr1	85579187	85579187	CT	C	ENSMUST00000093508.6	1	ENSMUSG00000070034	FS	K/X	385	Sp110	ENSMUST00000093508.6:c.1154del	ENSMUSP00000091226.6:p.Lys385SerfsTer13	H-2-Db	9	11	1	SAFRMRQEI	NA	SMMPMBEC	212.114	NA	NA	151	0.113	246.936	NA	NA	NA	356.88	NA	263.4	NA	230.4729708	NA	212.1143253	SSC	-0.971428571	-0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.113	151	0	0	NA	1qC5	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.483974933	sgMsh2	cell line
chr1	92588592	92588592	A	C	ENSMUST00000190505.2	3	ENSMUSG00000046300	missense	K/N	87	Olfr1412	ENSMUST00000190505.2:c.261A>C	ENSMUSP00000150943.1:p.Lys87Asn	H-2-Db	9	11	1	NAMANFYSS	KAMANFYSS	SMM	238.572	187.767	0.787	280	0.211	448.615	248.476	0.554	418.17	714	263.3	574.7	187.7673167	238.5722904	233.6522675	322.5299134	SSC	0.014285714	0.385714286	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.211	280	0	0	NA	1qD	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.903705406	sgMsh2	cell line
chr1	74594618	74594618	CT	C	ENSMUST00000027357.11	1	ENSMUSG00000026171	FS	K/X	245	Rnf25	ENSMUST00000027357.11:c.734del	ENSMUSP00000027357.5:p.Lys245ArgfsTer31	H-2-Kb	8	24	0	TSLAFSSL	NA	NetMHC	4.67	NA	NA	55	0.182	8.657	NA	NA	NA	4.67	NA	6.1	NA	11.21346934	NA	11.74194387	SSC	1.4	1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.219	55	0	0	NA	1qC3	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.937969118	sgMsh2	cell line
chr1	92573497	92573497	T	C	ENSMUST00000214239.1	5	ENSMUSG00000058904	missense	F/L	109	Olfr1413	ENSMUST00000214239.1:c.325T>C	ENSMUSP00000150792.1:p.Phe109Leu	H-2-Kb	8	8	4	TQFLFFSL	TQFFFFSL	NetMHC	7.41	14.4	1.943	301	0.223	9.997	12.057	1.206	14.4	7.41	8.2	10	12.09873599	10.7830098	12.01544888	9.99401507	SSC	1.671428571	1.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.224	301	0	0	NA	1qD	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.959383938	sgMsh2	cell line
chr1	127412243	127412243	G	T	ENSMUST00000038361.10	1	ENSMUSG00000036155	missense	V/L	454	Mgat5	ENSMUST00000038361.10:c.1360G>T	ENSMUSP00000038359.4:p.Val454Leu	H-2-Kb	8	4	8	QSLVYGKL	QSLVYGKV	NetMHC	15.26	75.8	4.967	83	0.181	52.362	246.565	4.709	75.8	15.26	265.7	39.6	232.6697911	65.12383991	260.4593785	71.90183929	SSC	0.771428571	0.771428571	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.189	83	0	0	NA	1qE3	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.809480198	sgMsh2	cell line
chr1	164257135	164257135	T	C	ENSMUST00000044021.11	1	ENSMUSG00000040918	missense	V/A	198	Slc19a2	ENSMUST00000044021.11:c.593T>C	ENSMUSP00000037561.5:p.Val198Ala	H-2-Kb	8	6	6	ISLTCASV	ISLTCVSV	NetMHC	51.16	308.97	6.039	247	0.251	78.087	277.713	3.556	308.97	51.16	437.3	155.2	246.456343	85.25895396	204.5219854	70.91530907	SSC	1.428571429	1.471428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	247	0	0	NA	1qH2.2	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr1	92573497	92573497	T	C	ENSMUST00000214239.1	5	ENSMUSG00000058904	missense	F/L	109	Olfr1413	ENSMUST00000214239.1:c.325T>C	ENSMUSP00000150792.1:p.Phe109Leu	H-2-Kb	8	9	3	QFLFFSLL	QFFFFSLL	NetMHCpan	54.9	24.2	0.441	301	0.223	76.332	26.545	0.348	33.77	77.72	24.2	54.9	17.93659491	74.94454029	28.88949831	124.9510759	SSC	2.714285714	2.714285714	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.224	301	0	0	NA	1qD	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.959383938	sgMsh2	cell line
chr1	130655982	130655982	G	A	ENSMUST00000027657.13	1	ENSMUSG00000026405	missense	T/I	83	C4bp	ENSMUST00000027657.13:c.248C>T	ENSMUSP00000027657.7:p.Thr83Ile	H-2-Kb	8	10	2	TILKYECL	TTLKYECL	SMMPMBEC	182.28	174.88	0.959	65	0.231	207.754	228.089	1.098	260.41	219.74	261.8	309.4	195.7672319	195.7672319	174.8799418	182.2804114	SSC	0.842857143	0.842857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.246	65	0	0	NA	1qE4	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr1	23370041	23370041	CT	C	ENSMUST00000027343.5	3	ENSMUSG00000026158	FS	K/X	368	Ogfrl1	ENSMUST00000027343.5:c.1103del	ENSMUSP00000027343.5:p.Lys368ArgfsTer83	H-2-Kb	8	40	0	KTVLLTNL	NA	NetMHCpan	199	NA	NA	145	0.269	255.732	NA	NA	NA	241.23	NA	199	NA	275.892567	NA	270.2340064	SSC	1.528571429	1.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.271	145	0	0	NA	1qA5	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr1	66672782	66672782	G	T	ENSMUST00000061620.16	1	ENSMUSG00000055567	missense	Q/H	2754	Unc80	ENSMUST00000061620.16:c.8262G>T	ENSMUSP00000053692.9:p.Gln2754His	H-2-Kb	8	6	6	VALQIHAL	VALQIQAL	NetMHCpan	178.3	236.9	1.329	88	0.114	247.747	275.021	1.11	172.04	245.61	236.9	178.3	313.1410475	249.8848923	344.1438398	252.7784229	SSC	1.285714286	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.115	88	0	0	NA	1qC3	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.492540861	sgMsh2	cell line
chr1	37807068	37807068	T	C	ENSMUST00000041815.14	1	ENSMUSG00000060771	missense	I/V	326	Tsga10	ENSMUST00000041815.14:c.976A>G	ENSMUSP00000048859.8:p.Ile326Val	H-2-Kb	8	11	1	VSRMRRQL	ISRMRRQL	SMMPMBEC	230.537	224.771	0.975	101	0.238	277.11	292.987	1.057	284.16	271.25	1438.9	1646.9	301.8144301	282.9697428	224.7708563	230.5366617	SSC	-1.728571429	-1.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.255	101	0	0	NA	1qB	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr1	74594618	74594618	CT	C	ENSMUST00000027357.11	1	ENSMUSG00000026171	FS	K/X	245	Rnf25	ENSMUST00000027357.11:c.734del	ENSMUSP00000027357.5:p.Lys245ArgfsTer31	H-2-Kb	8	26	0	LAFSSLLL	NA	NetMHCpan	157.3	NA	NA	55	0.182	410.488	NA	NA	NA	334.86	NA	157.3	NA	486.1160944	NA	514.9202839	SSC	2.057142857	2.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.219	55	0	0	NA	1qC3	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.937969118	sgMsh2	cell line
chr1	144139554	144139554	T	G	ENSMUST00000111941.1	1	ENSMUSG00000051079	missense	K/Q	142	Rgs13	ENSMUST00000111941.1:c.424A>C	ENSMUSP00000107572.1:p.Lys142Gln	H-2-Kb	8	11	1	QSEMYQQL	KSEMYQQL	SMMPMBEC	286.246	135.438	0.473	208	0.274	400.316	257.12	0.642	295.09	446.03	493.4	1564.5	219.1492557	354.6010359	135.4378341	286.246378	SSC	-0.985714286	-0.985714286	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.281	208	0	0	NA	1qF	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr1	36316314	36316314	C	A	ENSMUST00000097778.8	1	ENSMUSG00000037447	missense	P/H	66	Arid5a	ENSMUST00000097778.8:c.197C>A	ENSMUSP00000095385.2:p.Pro66His	H-2-Kb	8	7	5	RSQSHTQL	RSQSPTQL	SMM	239.188	1335.796	5.585	37	0.243	394.128	3510.897	8.908	5437.85	511.09	7768.4	1494.3	1335.795574	239.1883374	1583.944645	277.1660292	SSC	-1.242857143	-1.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	37	0	0	NA	1qB	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr1	128236639	128236639	T	C	ENSMUST00000036288.10	5	ENSMUSG00000056211	missense	S/P	1097	R3hdm1	ENSMUST00000036288.10:c.3289T>C	ENSMUSP00000043103.4:p.Ser1097Pro	H-2-Kb	8	5	7	VLATFPPI	VLATFPSI	NetMHCpan	126.5	191	1.51	190	0.195	379.113	788.522	2.08	1354.05	567.82	191	126.5	773.9982879	374.7485835	803.0452175	383.4775994	SSC	1.285714286	1.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.196	190	0	0	NA	1qE3	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.839460946	sgMsh2	cell line
chr1	46775247	46775247	A	G	ENSMUST00000189749.6	5	ENSMUSG00000101337	missense	M/V	3620	Dnah7c	ENSMUST00000189749.6:c.10858A>G	ENSMUSP00000140430.1:p.Met3620Val	H-2-Kb	8	6	6	VQQLHVFL	VQQLHMFL	SMM	187.387	144.79	0.773	327	0.229	373.332	246.921	0.661	259.02	699.81	396.4	484.4	144.7904774	187.3872337	234.8226582	262.2647967	SSC	0.628571429	0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.232	327	0	0	NA	1qC1.1	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.99364765	sgMsh2	cell line
chr1	92573497	92573497	T	C	ENSMUST00000214239.1	5	ENSMUSG00000058904	missense	F/L	109	Olfr1413	ENSMUST00000214239.1:c.325T>C	ENSMUSP00000150792.1:p.Phe109Leu	H-2-Kb	9	8	4	TQFLFFSLL	TQFFFFSLL	NetMHCpan	5.6	5.2	0.929	301	0.223	16.053	18.853	1.174	10.41	6.69	5.2	5.6	27.29669078	25.41616376	30.14740949	31.71392538	SSC	2.714285714	2.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.224	301	0	0	NA	1qD	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.959383938	sgMsh2	cell line
chr1	74594618	74594618	CT	C	ENSMUST00000027357.11	1	ENSMUSG00000026171	FS	K/X	245	Rnf25	ENSMUST00000027357.11:c.734del	ENSMUSP00000027357.5:p.Lys245ArgfsTer31	H-2-Kb	9	24	0	TSLAFSSLL	NA	NetMHC	12.89	NA	NA	55	0.182	58.35	NA	NA	NA	12.89	NA	18.5	NA	98.19966359	NA	134.9739632	SSC	2.057142857	2.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.219	55	0	0	NA	1qC3	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.937969118	sgMsh2	cell line
chr1	56891225	56891225	T	G	ENSMUST00000114415.9	1	ENSMUSG00000038331	missense	N/T	213	Satb2	ENSMUST00000114415.9:c.638A>C	ENSMUSP00000110057.3:p.Asn213Thr	H-2-Kb	9	4	8	VNSTYYATV	VNSTYYANV	NetMHC	12.91	6.03	0.467	177	0.226	53.822	44.025	0.818	6.03	12.91	9.3	13.4	93.34907095	111.4576803	78.74989801	94.24319478	SSC	0.171428571	0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.237	177	0	0	NA	1qC1.3	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr1	128300744	128300744	T	C	ENSMUST00000073490.6	2	ENSMUSG00000026354	missense	N/S	1004	Lct	ENSMUST00000073490.6:c.3011A>G	ENSMUSP00000073190.6:p.Asn1004Ser	H-2-Kb	9	5	7	QGVDYYSKL	QGVDYYNKL	NetMHC	37.85	77.13	2.038	132	0.227	127.881	182.193	1.425	77.13	37.85	122.7	55.2	257.1046906	224.4450336	241.6851686	200.5626226	SSC	-0.4	-0.4	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.231	132	0	0	NA	1qE3	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.989364686	sgMsh2	cell line
chr1	20935005	20935005	T	G	ENSMUST00000189400.6	1	ENSMUSG00000025931	missense	L/V	128	Paqr8	ENSMUST00000189400.6:c.382T>G	ENSMUSP00000141054.1:p.Leu128Val	H-2-Kb	9	3	9	ITYLTCSLV	ITYLTCSLL	NetMHC	51.11	20.64	0.404	88	0.261	138.197	48.33	0.35	20.64	51.11	27.3	120.4	69.36014622	155.9947563	94.8964574	212.4467052	SSC	1.642857143	1.642857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.245	88	0	0	NA	1qA4	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr1	74594618	74594618	CT	C	ENSMUST00000027357.11	1	ENSMUSG00000026171	FS	K/X	245	Rnf25	ENSMUST00000027357.11:c.734del	ENSMUSP00000027357.5:p.Lys245ArgfsTer31	H-2-Kb	9	26	0	LAFSSLLLL	NA	SMM	159.261	NA	NA	55	0.182	204.075	NA	NA	NA	192.85	NA	215.3	NA	159.261206	NA	229.2186762	SSC	2.342857143	2.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.219	55	0	0	NA	1qC3	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.937969118	sgMsh2	cell line
chr1	128236639	128236639	T	C	ENSMUST00000036288.10	5	ENSMUSG00000056211	missense	S/P	1097	R3hdm1	ENSMUST00000036288.10:c.3289T>C	ENSMUSP00000043103.4:p.Ser1097Pro	H-2-Kb	9	4	8	TVLATFPPI	TVLATFPSI	NetMHCpan	156.6	241.4	1.542	190	0.195	337.842	596.246	1.765	373.82	205.67	241.4	156.6	818.6721187	470.0131405	895.8803273	523.901932	SSC	1.285714286	1.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.196	190	0	0	NA	1qE3	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.839460946	sgMsh2	cell line
chr1	85579187	85579187	CT	C	ENSMUST00000093508.6	1	ENSMUSG00000070034	FS	K/X	385	Sp110	ENSMUST00000093508.6:c.1154del	ENSMUSP00000091226.6:p.Lys385SerfsTer13	H-2-Kb	9	11	1	SAFRMRQEI	NA	NetMHC	222.54	NA	NA	151	0.113	380.963	NA	NA	NA	222.54	NA	325.3	NA	436.6264089	NA	527.5334467	SSC	-0.971428571	-0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.113	151	0	0	NA	1qC5	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.483974933	sgMsh2	cell line
chr1	134746867	134746867	A	C	ENSMUST00000121990.1	1	ENSMUSG00000026452	missense	I/L	348	Syt2	ENSMUST00000121990.1:c.1042A>C	ENSMUSP00000112438.1:p.Ile348Leu	H-2-Kb	9	5	7	ESFSFELPF	ESFSFEIPF	SMM	167.923	162.222	0.966	115	0.235	212.067	238.386	1.124	256.86	267.23	260.3	199.1	162.2220929	167.9229287	219.9125427	225.0349638	SSC	0.9	0.9	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.241	115	0	0	NA	1qE4	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr1	46775247	46775247	A	G	ENSMUST00000189749.6	5	ENSMUSG00000101337	missense	M/V	3620	Dnah7c	ENSMUST00000189749.6:c.10858A>G	ENSMUSP00000140430.1:p.Met3620Val	H-2-Kb	9	11	1	VFLDQYEEL	MFLDQYEEL	SMM	216.327	554.766	2.564	327	0.229	274.502	733.154	2.671	824.73	301.12	1645	622	554.7662088	216.3266376	641.5787927	247.8848587	SSC	-1.1	-0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.232	327	0	0	NA	1qC1.1	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.99364765	sgMsh2	cell line
chr1	127412243	127412243	G	T	ENSMUST00000038361.10	1	ENSMUSG00000036155	missense	V/L	454	Mgat5	ENSMUST00000038361.10:c.1360G>T	ENSMUSP00000038359.4:p.Val454Leu	H-2-Kb	9	6	6	LVYGKLDSF	LVYGKVDSF	SMM	278.042	542.138	1.95	83	0.181	372.202	726.824	1.953	911.51	463.7	1434.9	1078.9	542.1381881	278.0417415	480.0096849	280.704904	SSC	-0.471428571	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.189	83	0	0	NA	1qE3	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.809480198	sgMsh2	cell line
chr10	5228100	5228100	T	G	ENSMUST00000215295.1	5	ENSMUSG00000096054	missense	K/N	4791	Syne1	ENSMUST00000215295.1:c.14373A>C	ENSMUSP00000150262.1:p.Lys4791Asn	H-2-Db	9	9	3	QANVNEETL	QAKVNEETL	NetMHC	39.37	362.31	9.203	60	0.283	44.8	257.197	5.741	362.31	39.37	353.1	58.3	161.2946639	43.51309752	149.8200715	46.08610447	SSC	-0.957142857	-0.957142857	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.289	60	0	0	NA	10qA1	chr10-3120209-80778611	3	2	1	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr1	174158781	174158781	T	C	ENSMUST00000213748.1	5	ENSMUSG00000055033	missense	F/L	3	Olfr420	ENSMUST00000213748.1:c.7T>C	ENSMUSP00000149052.1:p.Phe3Leu	H-2-Db	9	1	3	MGLSNWTTA	MGFSNWTTA	NetMHC	58.65	200.38	3.417	132	0.205	125.847	225.949	1.795	200.38	58.65	130.3	108.6	287.4881843	143.0935308	251.518538	143.7374712	SSC	-0.142857143	-0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.211	132	0	0	NA	1qH3	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.903705406	sgMsh2	cell line
chr1	165539831	165539831	A	G	ENSMUST00000027852.14	1	ENSMUSG00000026567	missense	T/A	557	Adcy10	ENSMUST00000027852.14:c.1669A>G	ENSMUSP00000027852.8:p.Thr557Ala	H-2-Db	9	4	8	SFHQNFYAI	SFHQNFYTI	SMM	105.104	62.176	0.592	137	0.292	167.108	96.911	0.58	73.99	141.21	379.5	647.3	62.17560216	105.1041828	119.8312253	193.0056399	SSC	-0.342857143	-0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.293	137	0	0	NA	1qH2.3	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr10	81271396	81271396	T	C	ENSMUST00000220297.1	5	ENSMUSG00000004931	missense	I/T	291	Apba3	ENSMUST00000220297.1:c.872T>C	ENSMUSP00000151985.1:p.Ile291Thr	H-2-Db	9	6	6	HALQTTSYI	HALQTISYI	NetMHC	170.73	199.37	1.168	69	0.319	494.592	394.302	0.797	199.37	170.73	229.4	338.2	702.4574131	702.4574131	559.2036533	650.9835285	SSC	0.185714286	0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.324	69	0	0	NA	10qC1	chr10-80780538-129526639	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr10	52155111	52155111	A	G	ENSMUST00000020045.9	1	ENSMUSG00000019893	missense	F/S	487	Ros1	ENSMUST00000020045.9:c.1460T>C	ENSMUSP00000020045.3:p.Phe487Ser	H-2-Db	9	8	4	MQLSMSTFL	MQLFMSTFL	NetMHCpan	300.8	437.2	1.453	47	0.234	468.764	682.748	1.456	607.67	354.66	437.2	300.8	862.223787	646.576625	757.8268703	582.8677144	SSC	1.428571429	1.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.257	47	0	0	NA	10qB3	chr10-3120209-80778611	3	2	1	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr1	175153188	175153188	T	C	ENSMUST00000195324.5	5	ENSMUSG00000026527	missense	Y/C	90	Rgs7	ENSMUST00000195324.5:c.269A>G	ENSMUSP00000141380.1:p.Tyr90Cys	H-2-Db	9	7	5	AAHGCFFPI	AAHGYFFPI	NetMHCpan	376.9	606.1	1.608	150	0.227	430.644	828.956	1.925	2188.87	824.3	606.1	376.9	791.8082091	435.1309752	866.1039116	426.1573665	SSC	1.057142857	1.157142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.228	150	0	0	NA	1qH3	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.976515794	sgMsh2	cell line
chr10	50754122	50754122	G	T	ENSMUST00000035606.9	5	ENSMUSG00000038774	missense	S/I	1769	Ascc3	ENSMUST00000035606.9:c.5306G>T	ENSMUSP00000036726.8:p.Ser1769Ile	H-2-Kb	8	8	4	MNPIYYSL	MNPSYYSL	NetMHC	10.83	12.27	1.133	149	0.383	32.613	36.465	1.118	12.27	10.83	28.9	21.7	44.02911945	43.52512229	62.62388407	64.23030732	SSC	-0.028571429	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.382	149	0	0	NA	10qB3	chr10-3120209-80778611	3	2	1	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr1	174041991	174041991	C	T	ENSMUST00000214690.1	5	ENSMUSG00000045381	missense	L/F	14	Olfr433	ENSMUST00000214690.1:c.40C>T	ENSMUSP00000149005.1:p.Leu14Phe	H-2-Kb	8	7	5	RTFIFAGF	RTFILAGF	NetMHC	11.47	340.48	29.684	156	0.263	27.277	357.183	13.095	340.48	11.47	171.8	19.5	482.7696948	45.7867692	373.8866857	35.05419514	SSC	1.942857143	1.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.27	156	0	0	NA	1qH3	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr1	172246733	172246733	CA	C	ENSMUST00000111243.1	5	ENSMUSG00000007107	FS	W/X	318	Atp1a4	ENSMUST00000111243.1:c.952del	ENSMUSP00000106874.1:p.Trp318GlyfsTer37	H-2-Kb	8	7	5	VSFFGSRL	VSFFWLSI	NetMHCpan	6.8	13.2	1.941	125	0.256	14.817	50.863	3.433	61.62	12.7	13.2	6.8	55.30189331	19.71242255	46.42372661	16.93323751	SSC	0.414285714	0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.258	125	0	0	NA	1qH3	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr1	174448814	174448814	A	G	ENSMUST00000194229.2	3	ENSMUSG00000066671	missense	M/V	64	Olfr220	ENSMUST00000194229.2:c.190A>G	ENSMUSP00000141919.1:p.Met64Val	H-2-Kb	8	11	1	VYFFLSHL	MYFFLSHL	NetMHCpan	9.4	18.4	1.957	173	0.173	45.872	102.23	2.229	79.22	33.03	18.4	9.4	125.2391179	58.71377443	128.7478543	60.77710368	SSC	1.128571429	1.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.181	173	0	0	NA	1qH3	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.775216486	sgMsh2	cell line
chr1	172246733	172246733	CA	C	ENSMUST00000111243.1	5	ENSMUSG00000007107	FS	W/X	318	Atp1a4	ENSMUST00000111243.1:c.952del	ENSMUSP00000106874.1:p.Trp318GlyfsTer37	H-2-Kb	8	21	0	WMLSFSLL	NA	NetMHC	40.03	NA	NA	125	0.256	68.051	NA	NA	NA	40.03	NA	56.9	NA	87.44601036	NA	79.2027024	SSC	2.071428571	2.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.258	125	0	0	NA	1qH3	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr10	34044091	34044091	G	A	ENSMUST00000048052.6	1	ENSMUSG00000039508	missense	A/V	60	Calhm4	ENSMUST00000048052.6:c.179C>T	ENSMUSP00000042466.5:p.Ala60Val	H-2-Kb	8	4	8	SAFLVVPV	SAFLVVPA	NetMHC	93.28	1313.85	14.085	99	0.303	117.213	797.972	6.808	1313.85	93.28	868.6	112.6	727.3442335	121.8260042	658.7793843	137.0061303	SSC	2.771428571	2.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.319	99	0	0	NA	10qB1	chr10-3120209-80778611	3	2	1	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr10	79743534	79743534	T	C	ENSMUST00000020580.12	1	ENSMUSG00000020329	missense	T/A	128	Polrmt	ENSMUST00000020580.12:c.382A>G	ENSMUSP00000020580.6:p.Thr128Ala	H-2-Kb	8	5	7	LTQEFWAL	LTQEFWTL	SMM	129.045	214.655	1.663	83	0.265	166.469	236.66	1.422	958.43	286.43	196.6	168.6	214.6545013	129.0446488	258.6663888	164.3387578	SSC	-0.028571429	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.265	83	0	0	NA	10qC1	chr10-3120209-80778611	3	2	1	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr10	34044091	34044091	G	A	ENSMUST00000048052.6	1	ENSMUSG00000039508	missense	A/V	60	Calhm4	ENSMUST00000048052.6:c.179C>T	ENSMUSP00000042466.5:p.Ala60Val	H-2-Kb	8	8	4	VVPVLILL	VVPALILL	NetMHC	305.21	396.64	1.3	99	0.303	381.081	414.946	1.089	396.64	305.21	390.4	346.5	433.2514252	415.6616909	541.6765067	459.9811133	SSC	3.242857143	3.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.319	99	0	0	NA	10qB1	chr10-3120209-80778611	3	2	1	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr1	173937892	173937892	AT	A	ENSMUST00000129829.7	1	ENSMUSG00000039997	FS	M/X	39	Ifi203	ENSMUST00000129829.7:c.115del	ENSMUSP00000122424.1:p.Met39CysfsTer24	H-2-Kb	9	16	0	IGFSWRTGL	NA	NetMHC	12.97	NA	NA	145	0.186	71.775	NA	NA	NA	12.97	NA	13.5	NA	130.0498932	NA	148.3371737	SSC	-0.1	-9.52E-17	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.191	145	0	0	NA	1qH3	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.818046126	sgMsh2	cell line
chr1	174448814	174448814	A	G	ENSMUST00000194229.2	3	ENSMUSG00000066671	missense	M/V	64	Olfr220	ENSMUST00000194229.2:c.190A>G	ENSMUSP00000141919.1:p.Met64Val	H-2-Kb	9	10	2	PVYFFLSHL	PMYFFLSHL	SMM	29.793	13.744	0.461	173	0.173	37.756	27.523	0.729	44.85	51.57	32.8	30.3	13.74390042	29.79270937	22.24590099	45.21161284	SSC	1.128571429	1.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.181	173	0	0	NA	1qH3	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.775216486	sgMsh2	cell line
chr1	172246733	172246733	CA	C	ENSMUST00000111243.1	5	ENSMUSG00000007107	FS	W/X	318	Atp1a4	ENSMUST00000111243.1:c.952del	ENSMUSP00000106874.1:p.Trp318GlyfsTer37	H-2-Kb	9	23	0	LSFSLLVSL	NA	NetMHCpan	64.8	NA	NA	125	0.256	114.871	NA	NA	NA	102.36	NA	64.8	NA	127.382568	NA	136.536888	SSC	2.4	2.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.258	125	0	0	NA	1qH3	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr10	50754122	50754122	G	T	ENSMUST00000035606.9	5	ENSMUSG00000038774	missense	S/I	1769	Ascc3	ENSMUST00000035606.9:c.5306G>T	ENSMUSP00000036726.8:p.Ser1769Ile	H-2-Kb	9	7	5	IMNPIYYSL	IMNPSYYSL	NetMHCpan	106.8	122.5	1.147	149	0.383	213.697	155.456	0.727	120.49	198.25	122.5	106.8	188.4126249	229.1447967	231.3396105	261.9690589	SSC	-0.028571429	0.457142857	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.382	149	0	0	NA	10qB3	chr10-3120209-80778611	3	2	1	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr1	172246733	172246733	CA	C	ENSMUST00000111243.1	5	ENSMUSG00000007107	FS	W/X	318	Atp1a4	ENSMUST00000111243.1:c.952del	ENSMUSP00000106874.1:p.Trp318GlyfsTer37	H-2-Kb	9	20	0	GWMLSFSLL	NA	SMM	154.921	NA	NA	125	0.256	295.795	NA	NA	NA	319.79	NA	495.6	NA	154.920896	NA	271.8003427	SSC	2.071428571	2.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.258	125	0	0	NA	1qH3	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr10	19849510	19849510	A	G	ENSMUST00000059805.5	1	ENSMUSG00000050473	missense	L/P	200	Slc35d3	ENSMUST00000059805.5:c.599T>C	ENSMUSP00000060589.4:p.Leu200Pro	H-2-Kb	9	4	8	IAVSATPPL	IAVSATPLL	NetMHCpan	274.8	607.2	2.21	49	0.429	365.277	632.215	1.731	657.23	359.78	607.2	274.8	472.1826226	370.7746213	755.5270188	542.312981	SSC	0.728571429	1.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.416	49	0	0	NA	10qA3	chr10-3120209-80778611	3	2	1	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr1	172246733	172246733	CA	C	ENSMUST00000111243.1	5	ENSMUSG00000007107	FS	W/X	318	Atp1a4	ENSMUST00000111243.1:c.952del	ENSMUSP00000106874.1:p.Trp318GlyfsTer37	H-2-Kb	9	21	0	WMLSFSLLV	NA	SMM	192.801	NA	NA	125	0.256	393.804	NA	NA	NA	424.32	NA	1728.5	NA	192.8013187	NA	363.2871195	SSC	2.4	2.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.258	125	0	0	NA	1qH3	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr10	34044091	34044091	G	A	ENSMUST00000048052.6	1	ENSMUSG00000039508	missense	A/V	60	Calhm4	ENSMUST00000048052.6:c.179C>T	ENSMUSP00000042466.5:p.Ala60Val	H-2-Kb	9	4	8	SAFLVVPVL	SAFLVVPAL	NetMHCpan	260.6	103.6	0.398	99	0.303	456.597	235.848	0.517	123.27	447.34	103.6	260.6	348.4255546	491.0322312	376.053816	465.8541836	SSC	3.057142857	3.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.319	99	0	0	NA	10qB1	chr10-3120209-80778611	3	2	1	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr10	26336234	26336234	T	A	ENSMUST00000040219.12	5	ENSMUSG00000039089	missense	E/V	288	L3mbtl3	ENSMUST00000040219.12:c.863A>T	ENSMUSP00000037619.6:p.Glu288Val	H-2-Kb	9	11	1	VVCGYRIKL	EVCGYRIKL	SMMPMBEC	243.36	2139.193	8.79	77	0.377	438.506	5764.019	13.145	8335.17	449.34	7080.6	468.4	4447.438999	427.6711949	2139.193154	243.3604501	SSC	0.1	1.314285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.365	77	0	0	NA	10qA4	chr10-3120209-80778611	3	2	1	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr1	182341335	182341335	G	T	ENSMUST00000051431.9	1	ENSMUSG00000047539	missense	S/R	85	Fbxo28	ENSMUST00000051431.9:c.255C>A	ENSMUSP00000054718.4:p.Ser85Arg	H-2-Kb	9	5	7	MSYDEIRQL	MSYDEISQL	NetMHCpan	157.9	95.7	0.606	43	0.14	330.936	175.147	0.529	291.06	459.17	95.7	157.9	180.7631913	336.5968133	169.531342	325.2744865	SSC	-1.142857143	-1.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.175	43	0	0	NA	1qH5	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.749518702	sgMsh2	cell line
chr1	192847134	192847134	A	G	ENSMUST00000155579.7	1	ENSMUSG00000016262	missense	Y/H	125	Sertad4	ENSMUST00000155579.7:c.373T>C	ENSMUSP00000116176.1:p.Tyr125His	H-2-Kb	9	10	2	VHLRRSVLI	VYLRRSVLI	SMM	451.97	325.919	0.721	115	0.261	477.751	393.431	0.824	435.1	490.72	734	686.4	325.9192408	451.9704069	351.7628732	464.7827487	SSC	0.928571429	0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.257	115	0	0	NA	1qH6	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr10	23897365	23897365	T	C	ENSMUST00000041416.7	1	ENSMUSG00000037440	missense	Y/H	97	Vnn1	ENSMUST00000041416.7:c.289T>C	ENSMUSP00000040599.7:p.Tyr97His	H-2-Kb	9	7	5	TIYPHLEEI	TIYPYLEEI	NetMHCpan	162.8	59.8	0.367	24	0.417	280.695	187.481	0.668	155.05	490.72	59.8	162.8	228.6177783	285.1740477	219.9125427	276.216743	SSC	-0.685714286	-0.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.417	24	0	0	NA	10qA4	chr10-3120209-80778611	3	2	1	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr1	185323752	185323752	A	G	ENSMUST00000027921.10	1	ENSMUSG00000026618	missense	M/T	205	Iars2	ENSMUST00000027921.10:c.614T>C	ENSMUSP00000027921.4:p.Met205Thr	H-2-Kb	9	3	9	SAFVRWGVT	SAFVRWGVM	SMMPMBEC	196.449	52.997	0.27	78	0.167	432.451	57.053	0.132	65.61	668.72	51.3	596.3	61.10967866	268.6024688	52.99684305	196.4490803	SSC	0.671428571	1.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.186	78	0	0	NA	1qH5	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.796631306	sgMsh2	cell line
chr1	175153188	175153188	T	C	ENSMUST00000195324.5	5	ENSMUSG00000026527	missense	Y/C	90	Rgs7	ENSMUST00000195324.5:c.269A>G	ENSMUSP00000141380.1:p.Tyr90Cys	H-2-Kb	9	7	5	AAHGCFFPI	AAHGYFFPI	NetMHCpan	475.8	43.5	0.091	150	0.227	498.69	151.709	0.304	152.67	731.8	43.5	475.8	152.7953016	511.811453	150.7474589	485.5679351	SSC	1.057142857	1.157142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.228	150	0	0	NA	1qH3	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.976515794	sgMsh2	cell line
chr11	61449691	61449691	A	G	ENSMUST00000054927.13	1	ENSMUSG00000010086	missense	S/P	561	Rnf112	ENSMUST00000054927.13:c.1681T>C	ENSMUSP00000056464.7:p.Ser561Pro	H-2-Db	9	6	6	KAFMDPYTM	KAFMDSYTM	NetMHC	143.52	155.09	1.081	42	0.19	339.983	369.651	1.087	155.09	143.52	128.2	144.7	617.4758832	539.0387667	584.2113633	535.2664216	SSC	-0.071428571	-0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.209	42	0	0	NA	11qB2	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	0.895139478	sgMsh2	cell line
chr11	43835686	43835686	T	C	ENSMUST00000067258.8	1	ENSMUSG00000050541	missense	S/G	135	Adra1b	ENSMUST00000067258.8:c.403A>G	ENSMUSP00000070200.2:p.Ser135Gly	H-2-Db	9	7	5	ASILGLCAI	ASILSLCAI	SMMPMBEC	393.161	265.809	0.676	85	0.259	445.671	273.24	0.613	280.67	577.5	248.5	460.2	294.86281	431.1416704	265.8091949	393.1606098	SSC	2.928571429	2.928571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.268	85	0	0	NA	11qB1.1	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr10	130112476	130112476	A	G	ENSMUST00000213145.1	5	ENSMUSG00000096747	missense	F/L	105	Olfr823	ENSMUST00000213145.1:c.313T>C	ENSMUSP00000150794.1:p.Phe105Leu	H-2-Kb	8	8	4	TQFLFFAL	TQFFFFAL	NetMHC	5.67	9.98	1.76	182	0.269	7.893	9.722	1.232	9.98	5.67	9.9	12.5	8.805215715	7.847656766	9.544210297	7.938528349	SSC	2.042857143	2.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.273	182	0	0	NA	10qD3	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	sgMsh2	cell line
chr10	129607852	129607852	T	C	ENSMUST00000214584.2	2	ENSMUSG00000052012	missense	I/V	210	Olfr796	ENSMUST00000214584.2:c.628A>G	ENSMUSP00000150534.1:p.Ile210Val	H-2-Kb	8	9	3	IMVPFSLI	IMIPFSLI	NetMHCpan	32.2	18.4	0.571	115	0.148	209.526	110.911	0.529	30.07	61.17	18.4	32.2	191.7520431	366.2182643	194.4195797	357.8821189	SSC	2.114285714	2.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.153	115	0	0	NA	10qD3	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	sgMsh2	cell line
chr11	34688463	34688463	A	T	ENSMUST00000093193.11	1	ENSMUSG00000020143	missense	L/M	708	Dock2	ENSMUST00000093193.11:c.2122T>A	ENSMUSP00000090884.5:p.Leu708Met	H-2-Kb	8	9	3	ATMAYKKL	ATLAYKKL	NetMHCpan	62.7	80.7	1.287	122	0.279	117.441	94.582	0.805	84.03	96.29	80.7	62.7	118.7790917	204.0515979	105.1332282	138.5925865	SSC	-0.328571429	-0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.29	122	0	0	NA	11qA4	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr10	117671739	117671739	A	G	ENSMUST00000020399.5	1	ENSMUSG00000020183	missense	N/D	254	Cpm	ENSMUST00000020399.5:c.760A>G	ENSMUSP00000020399.5:p.Asn254Asp	H-2-Kb	8	11	1	DGYSWYPL	NGYSWYPL	SMMPMBEC	105.133	66.182	0.63	108	0.38	111.803	58.341	0.522	44.26	117.5	50.5	215.1	76.51384027	106.106014	66.18201718	105.1332282	SSC	-0.357142857	-0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.371	108	0	0	NA	10qD2	chr10-80780538-129526639	4	2	2	0.96	4.11164545	NA	2	1	sgMsh2	cell line
chr10	129607852	129607852	T	C	ENSMUST00000214584.2	2	ENSMUSG00000052012	missense	I/V	210	Olfr796	ENSMUST00000214584.2:c.628A>G	ENSMUSP00000150534.1:p.Ile210Val	H-2-Kb	8	6	6	VVFIMVPF	VVFIMIPF	NetMHC	148.63	165.64	1.114	115	0.148	165.363	211.076	1.276	165.64	148.63	211.9	149.7	273.3631687	250.4609364	210.2519343	181.0256018	SSC	2.685714286	2.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.153	115	0	0	NA	10qD3	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	sgMsh2	cell line
chr10	129607852	129607852	T	C	ENSMUST00000214584.2	2	ENSMUSG00000052012	missense	I/V	210	Olfr796	ENSMUST00000214584.2:c.628A>G	ENSMUSP00000150534.1:p.Ile210Val	H-2-Kb	8	4	8	ATVVFIMV	ATVVFIMI	SMMPMBEC	243.635	386.136	1.585	115	0.148	269.657	495.56	1.838	508.35	273.4	730.2	947.8	482.7696948	265.9132635	386.1357391	243.6351806	SSC	3.014285714	3.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.153	115	0	0	NA	10qD3	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	sgMsh2	cell line
chr11	23333806	23333806	A	G	ENSMUST00000180046.7	5	ENSMUSG00000056342	missense	I/V	167	Usp34	ENSMUST00000180046.7:c.499A>G	ENSMUSP00000137430.1:p.Ile167Val	H-2-Kb	8	8	4	IFQVQFPL	IFQIQFPL	SMM	172.48	187.387	1.086	100	0.28	344.13	382.03	1.11	479.8	408.53	431.6	500.8	187.3872337	172.480499	332.4604589	279.7306149	SSC	0.714285714	0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.285	100	0	0	NA	11qA3.2	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr11	49341357	49341357	CT	C	ENSMUST00000215014.1	5	ENSMUSG00000045421	FS	L/X	275	Olfr1390	ENSMUST00000215014.1:c.829del	ENSMUSP00000151059.1:p.Tyr277IlefsTer11	H-2-Kb	8	8	6	FVALFILL	FVALFYII	SMM	181.443	1785.418	9.84	351	0.236	354.925	2147.623	6.051	3065.65	490.7	1973.9	713.2	1785.418375	181.4429089	2321.346655	219.1492557	SSC	3.528571429	3.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.24	351	0	0	NA	11qB1.2	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr10	129437268	129437268	T	C	ENSMUST00000204529.2	3	ENSMUSG00000095696	missense	L/P	152	Olfr786	ENSMUST00000204529.2:c.455T>C	ENSMUSP00000145099.1:p.Leu152Pro	H-2-Kb	8	10	2	FPIIFPAL	FLIIFPAL	SMM	114.747	118.506	1.033	285	0.267	378.842	170.833	0.451	219.84	610.54	261.3	732.8	118.5059074	114.746646	121.8260042	147.1431334	SSC	2.028571429	2.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.267	285	0	0	NA	10qD3	chr10-80780538-129526639	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr11	60865023	60865023	G	T	ENSMUST00000062677.11	1	ENSMUSG00000043284	missense	P/T	128	Tmem11	ENSMUST00000062677.11:c.382C>A	ENSMUSP00000059494.5:p.Pro128Thr	H-2-Kb	8	5	7	ISWQFDTC	ISWQFDPC	SMM	152.314	60.917	0.4	75	0.053	372.833	112.044	0.301	163.17	715.79	322.2	588	60.91720937	152.3140619	60.21989584	157.666708	SSC	-0.585714286	-0.3	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.054	75	0	0	NA	11qB2	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	0.231280057	sgMsh2	cell line
chr10	130472110	130472110	CA	C	ENSMUST00000164227.3	5	ENSMUSG00000091511	FS	L/X	753	Vmn2r87	ENSMUST00000164227.3:c.2258del	ENSMUSP00000129215.2:p.Leu753TrpfsTer25	H-2-Kb	8	15	0	ASLWLSWL	NA	SMM	312.421	NA	NA	630	0.249	407.641	NA	NA	NA	717.62	NA	457.4	NA	312.4208431	NA	357.8821189	SSC	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.254	630	0	0	NA	10qD3	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	sgMsh2	cell line
chr10	130472110	130472110	CA	C	ENSMUST00000164227.3	5	ENSMUSG00000091511	FS	L/X	753	Vmn2r87	ENSMUST00000164227.3:c.2258del	ENSMUSP00000129215.2:p.Leu753TrpfsTer25	H-2-Kb	8	19	0	LSWLGTFL	NA	SMMPMBEC	307.426	NA	NA	630	0.249	420.694	NA	NA	NA	1101.66	NA	318.1	NA	523.2870654	NA	307.4255792	SSC	1.085714286	1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.254	630	0	0	NA	10qD3	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	sgMsh2	cell line
chr10	130112476	130112476	A	G	ENSMUST00000213145.1	5	ENSMUSG00000096747	missense	F/L	105	Olfr823	ENSMUST00000213145.1:c.313T>C	ENSMUSP00000150794.1:p.Phe105Leu	H-2-Kb	9	8	4	TQFLFFALF	TQFFFFALF	NetMHC	22.92	33.98	1.483	182	0.269	39.052	38.472	0.985	33.98	22.92	28.9	38.1	42.96452354	40.00460623	44.08085403	46.3713778	SSC	2.942857143	2.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.273	182	0	0	NA	10qD3	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	sgMsh2	cell line
chr10	121596189	121596189	T	C	ENSMUST00000039810.7	5	ENSMUSG00000034667	missense	I/V	935	Xpot	ENSMUST00000039810.7:c.2803A>G	ENSMUSP00000043488.7:p.Ile935Val	H-2-Kb	9	10	2	IVQEFCQAL	IIQEFCQAL	NetMHC	29.19	27.49	0.942	93	0.258	210.663	225.97	1.073	27.49	29.19	92.1	72.9	359.8404656	348.4255546	390.1665199	383.0451784	SSC	0.057142857	0.5	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.278	93	0	0	NA	10qD2	chr10-80780538-129526639	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr11	59976887	59976887	A	C	ENSMUST00000102693.8	1	ENSMUSG00000000301	missense	F/V	140	Pemt	ENSMUST00000102693.8:c.418T>G	ENSMUSP00000099754.2:p.Phe140Val	H-2-Kb	9	11	1	VVLSSFYAL	FVLSSFYAL	NetMHCpan	37.4	216.3	5.783	54	0.259	69.634	257.114	3.692	158.46	38.55	216.3	37.4	297.9270937	100.7186741	487.8092149	164.1534444	SSC	1.328571429	1.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	54	0	0	NA	11qB1.3	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr11	34688463	34688463	A	T	ENSMUST00000093193.11	1	ENSMUSG00000020143	missense	L/M	708	Dock2	ENSMUST00000093193.11:c.2122T>A	ENSMUSP00000090884.5:p.Leu708Met	H-2-Kb	9	11	1	MAYKKLMTV	LAYKKLMTV	NetMHCpan	53.3	93.4	1.752	122	0.279	111.459	136.253	1.222	92.9	63.29	93.4	53.3	179.1059444	159.628341	191.9773533	191.9773533	SSC	0.014285714	0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.29	122	0	0	NA	11qA4	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr10	129754686	129754686	T	A	ENSMUST00000213379.1	5	ENSMUSG00000050478	missense	M/L	255	Olfr807	ENSMUST00000213379.1:c.763A>T	ENSMUSP00000149172.1:p.Met255Leu	H-2-Kb	9	3	9	ISYGSCIFL	ISYGSCIFM	NetMHC	67.13	154.95	2.308	188	0.266	106.451	174.575	1.64	154.95	67.13	136.5	69.6	202.3531643	153.854428	194.2003463	143.301257	SSC	1.585714286	1.585714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.284	188	0	0	NA	10qD3	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	sgMsh2	cell line
chr11	34688463	34688463	A	T	ENSMUST00000093193.11	1	ENSMUSG00000020143	missense	L/M	708	Dock2	ENSMUST00000093193.11:c.2122T>A	ENSMUSP00000090884.5:p.Leu708Met	H-2-Kb	9	3	9	IQQHFSATM	IQQHFSATL	NetMHC	108.3	43.99	0.406	122	0.279	432.806	302.966	0.7	43.99	108.3	87	183.1	518.9314595	682.5115418	629.8686601	853.5913393	SSC	-0.242857143	-0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.29	122	0	0	NA	11qA4	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr11	67211360	67211360	C	A	ENSMUST00000124516.7	1	ENSMUSG00000056328	missense	R/S	826	Myh1	ENSMUST00000124516.7:c.2476C>A	ENSMUSP00000117569.1:p.Arg826Ser	H-2-Kb	9	6	6	IQYNVSAFM	IQYNVRAFM	NetMHC	125.35	144.71	1.154	264	0.197	385.659	420.869	1.091	144.71	125.35	131.9	140.2	830.0609824	631.1171763	697.02764	656.5230826	SSC	0.728571429	0.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.199	264	0	0	NA	11qB3	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	0.852309838	sgMsh2	cell line
chr11	61546578	61546578	A	C	ENSMUST00000179936.7	1	ENSMUSG00000001036	missense	I/S	56	Epn2	ENSMUST00000179936.7:c.167T>G	ENSMUSP00000136950.1:p.Ile56Ser	H-2-Kb	9	6	6	VAFSESMSM	VAFSEIMSM	NetMHCpan	123.9	82.3	0.664	79	0.165	145.532	154.465	1.061	140.62	155.51	82.3	123.9	168.310031	135.5532704	254.8296748	263.7849417	SSC	0.1	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.153	79	0	0	NA	11qB2	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	0.655293494	sgMsh2	cell line
chr10	129437268	129437268	T	C	ENSMUST00000204529.2	3	ENSMUSG00000095696	missense	L/P	152	Olfr786	ENSMUST00000204529.2:c.455T>C	ENSMUSP00000145099.1:p.Leu152Pro	H-2-Kb	9	9	3	SFPIIFPAL	SFLIIFPAL	NetMHCpan	184.1	208.8	1.134	285	0.267	392.051	277.016	0.707	198.11	192.39	208.8	184.1	345.2311699	591.7114865	364.9639766	689.0488306	SSC	2.028571429	2.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.267	285	0	0	NA	10qD3	chr10-80780538-129526639	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr11	66145269	66145269	A	T	ENSMUST00000080665.9	5	ENSMUSG00000056752	missense	D/E	438	Dnah9	ENSMUST00000080665.9:c.1314T>A	ENSMUSP00000079494.3:p.Asp438Glu	H-2-Kb	9	5	7	LVFVRLEGF	LVFVRLDGF	SMM	175.837	200.498	1.14	85	0.212	217.209	246.217	1.134	266.36	239.77	675.3	414.5	200.4979793	175.8368925	226.073678	194.6480243	SSC	0.742857143	1.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe	3	0.225	85	0	0	NA	11qB3	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	0.963666902	sgMsh2	cell line
chr11	67243457	67243457	T	G	ENSMUST00000018632.10	5	ENSMUSG00000057003	missense	F/V	313	Myh4	ENSMUST00000018632.10:c.937T>G	ENSMUSP00000018632.4:p.Phe313Val	H-2-Kb	9	11	1	VAYVSQGEI	FAYVSQGEI	SMM	235.565	696.803	2.958	315	0.197	269.225	768.373	2.854	913.58	300.05	675.5	255.8	696.8029811	235.5645857	839.9433576	282.6506575	SSC	-0.114285714	0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.199	315	0	0	NA	11qB3	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	0.852309838	sgMsh2	cell line
chr10	130472110	130472110	CA	C	ENSMUST00000164227.3	5	ENSMUSG00000091511	FS	L/X	753	Vmn2r87	ENSMUST00000164227.3:c.2258del	ENSMUSP00000129215.2:p.Leu753TrpfsTer25	H-2-Kb	9	9	3	GSWLWGASL	NA	NetMHCpan	270.2	NA	NA	630	0.249	374.862	NA	NA	NA	300.72	NA	270.2	NA	563.7804345	NA	449.0037829	SSC	0.914285714	0.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.254	630	0	0	NA	10qD3	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	sgMsh2	cell line
chr10	129607852	129607852	T	C	ENSMUST00000214584.2	2	ENSMUSG00000052012	missense	I/V	210	Olfr796	ENSMUST00000214584.2:c.628A>G	ENSMUSP00000150534.1:p.Ile210Val	H-2-Kb	9	8	4	FIMVPFSLI	FIMIPFSLI	NetMHC	320.19	366.5	1.145	115	0.148	499.992	572.651	1.145	366.5	320.19	686.7	592.5	493.298733	407.4834739	652.0036095	662.5978159	SSC	2.114285714	2.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.153	115	0	0	NA	10qD3	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	sgMsh2	cell line
chr11	3291041	3291041	T	A	ENSMUST00000057089.12	1	ENSMUSG00000020453	missense	L/Q	143	Patz1	ENSMUST00000057089.12:c.428T>A	ENSMUSP00000050684.6:p.Leu143Gln	H-2-Kb	9	5	7	MTAAKFQLM	MTAAKFLLM	NetMHC	340.46	567.88	1.668	159	0.27	380.621	410.332	1.078	567.88	340.46	295.3	379.2	376.7992242	382.0410236	443.8640791	464.7827487	SSC	0.671428571	0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.26	159	0	0	NA	11qA1	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr10	129607852	129607852	T	C	ENSMUST00000214584.2	2	ENSMUSG00000052012	missense	I/V	210	Olfr796	ENSMUST00000214584.2:c.628A>G	ENSMUSP00000150534.1:p.Ile210Val	H-2-Kb	9	9	3	IMVPFSLIV	IMIPFSLIV	SMM	262.488	179.519	0.684	115	0.148	336.977	230.435	0.684	315.61	482.15	141.8	265.4	179.5188262	262.4883301	281.3519957	408.5545015	SSC	2.442857143	2.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.153	115	0	0	NA	10qD3	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	sgMsh2	cell line
chr10	129437268	129437268	T	C	ENSMUST00000204529.2	3	ENSMUSG00000095696	missense	L/P	152	Olfr786	ENSMUST00000204529.2:c.455T>C	ENSMUSP00000145099.1:p.Leu152Pro	H-2-Kb	9	5	7	SWLVSFPII	SWLVSFLII	SMM	268.602	322.931	1.202	285	0.267	495.553	719.896	1.453	850.61	484.99	1080	514.6	322.9311952	268.6024688	589.1827186	506.1159219	SSC	2.485714286	2.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.267	285	0	0	NA	10qD3	chr10-80780538-129526639	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr11	7139118	7139118	A	G	ENSMUST00000020706.4	2	ENSMUSG00000020431	missense	M/V	511	Adcy1	ENSMUST00000020706.4:c.1531A>G	ENSMUSP00000020706.4:p.Met511Val	H-2-Kb	9	3	9	VCYLLVQLV	VCYLLVQLM	SMMPMBEC	317.139	191.977	0.605	81	0.259	444.8	282.549	0.635	336.48	498.66	451.7	1247.2	228.6177783	390.9399022	191.9773533	317.1392538	SSC	2.142857143	2.142857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.266	81	0	0	NA	11qA1	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr10	130472110	130472110	CA	C	ENSMUST00000164227.3	5	ENSMUSG00000091511	FS	L/X	753	Vmn2r87	ENSMUST00000164227.3:c.2258del	ENSMUSP00000129215.2:p.Leu753TrpfsTer25	H-2-Kb	9	17	0	LWLSWLGTF	NA	SMM	245.533	NA	NA	630	0.249	456.634	NA	NA	NA	499.03	NA	2307.2	NA	245.5330734	NA	414.2380608	SSC	1.085714286	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.254	630	0	0	NA	10qD3	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	sgMsh2	cell line
chr11	23333806	23333806	A	G	ENSMUST00000180046.7	5	ENSMUSG00000056342	missense	I/V	167	Usp34	ENSMUST00000180046.7:c.499A>G	ENSMUSP00000137430.1:p.Ile167Val	H-2-Kb	9	5	7	VAKIFQVQF	VAKIFQIQF	SMMPMBEC	247.315	273.055	1.104	100	0.28	443.564	473.702	1.068	576.63	508.59	724	584.8	370.7746213	378.5384504	273.0549161	247.3147393	SSC	0.485714286	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.285	100	0	0	NA	11qA3.2	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr11	66145267	66145267	C	T	ENSMUST00000080665.9	5	ENSMUSG00000056752	missense	G/D	439	Dnah9	ENSMUST00000080665.9:c.1316G>A	ENSMUSP00000079494.3:p.Gly439Asp	H-2-Kb	9	4	8	LVFVRLDDF	LVFVRLDGF	SMMPMBEC	346.937	226.074	0.652	85	0.212	476.883	246.217	0.516	266.36	547.22	675.3	1626.6	200.4979793	406.5462879	226.073678	346.9365057	SSC	0.3	1.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe	3	0.225	85	0	0	NA	11qB3	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	0.963666902	sgMsh2	cell line
chr11	98488928	98488928	GT	G	ENSMUST00000103141.3	5	ENSMUSG00000018168	FS	K/X	171	Ikzf3	ENSMUST00000103141.3:c.513del	ENSMUSP00000099430.3:p.Lys171AsnfsTer88	H-2-Db	9	57	0	RSTRNAAEL	NA	NetMHC	122.01	NA	NA	68	0.294	138.556	NA	NA	NA	122.01	NA	192	NA	131.7103792	NA	145.4018727	SSC	-0.685714286	-0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.294	68	0	0	NA	11qD	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr11	98250334	98250334	AG	A	ENSMUST00000107538.1	1	ENSMUSG00000003119	FS	R/X	1467	Cdk12	ENSMUST00000107538.1:c.4405del	ENSMUSP00000103162.1:p.Ala1469LeufsTer35	H-2-Db	9	34	0	NALKDSFPI	NA	NetMHC	176.49	NA	NA	70	0.129	314.485	NA	NA	NA	176.49	NA	291.2	NA	337.7691648	NA	345.5970287	SSC	0.185714286	0.185714286	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;Vardict	3	0.153	70	0	0	NA	11qD	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	0.655293494	sgMsh2	cell line
chr11	74365244	74365244	A	G	ENSMUST00000216362.1	5	ENSMUSG00000058275	missense	T/A	192	Olfr412	ENSMUST00000216362.1:c.574A>G	ENSMUSP00000149922.1:p.Thr192Ala	H-2-Db	9	10	2	NAHINHMML	NTHINHMML	NetMHC	219.11	3426.81	15.64	163	0.245	247.63	2068.108	8.352	3426.81	219.11	1739.6	222.6	1772.637775	272.659102	2363.578332	413.5899718	SSC	0.314285714	0.314285714	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.257	163	0	0	NA	11qB5	chr11-69600961-82929860	4	3	1	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr11	100498252	100498252	A	G	ENSMUST00000107389.7	1	ENSMUSG00000020917	missense	V/A	568	Acly	ENSMUST00000107389.7:c.1703T>C	ENSMUSP00000103012.1:p.Val568Ala	H-2-Db	9	10	2	DALINFASL	DVLINFASL	SMM	77.736	497.302	6.397	115	0.322	188.563	1493.167	7.919	4361.29	281.94	2378.8	287	497.3017643	77.73560805	607.5331778	95.18532564	SSC	1.771428571	1.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.316	115	0	0	NA	11qD	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr11	97181660	97181660	T	C	ENSMUST00000001479.4	1	ENSMUSG00000001440	missense	T/A	150	Kpnb1	ENSMUST00000001479.4:c.448A>G	ENSMUSP00000001479.3:p.Thr150Ala	H-2-Db	9	10	2	SALEAIGYI	STLEAIGYI	NetMHCpan	418.4	2939.3	7.025	292	0.209	447.643	3137.803	7.01	4778.06	436.49	2939.3	418.4	2982.771604	458.7963984	3292.835233	576.1956828	SSC	1.342857143	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.211	292	0	0	NA	11qD	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	0.903705406	sgMsh2	cell line
chr11	94465827	94465827	A	T	ENSMUST00000100561.9	1	ENSMUSG00000020866	missense	I/N	161	Cacna1g	ENSMUST00000100561.9:c.482T>A	ENSMUSP00000098127.3:p.Ile161Asn	H-2-Db	9	7	5	FFIVNAGML	FFIVIAGML	SMM	159.448	7544.318	47.315	73	0.219	338.685	16773.919	49.527	27545.88	456.28	22744.2	1425.2	7544.318243	159.4483392	10803.63741	221.0904583	SSC	1.757142857	1.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.246	73	0	0	NA	11qD	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr11	116607343	116607343	T	C	ENSMUST00000103028.7	1	ENSMUSG00000020806	missense	N/S	10	Rhbdf2	ENSMUST00000103028.7:c.29A>G	ENSMUSP00000099317.1:p.Asn10Ser	H-2-Db	9	3	8	SADKNGSSL	SADKNGSNL	NetMHCpan	264.2	514.2	1.946	32	0.25	491.14	788.8	1.606	1790.39	859.51	514.2	264.2	838.7257951	517.1541332	738.8733457	465.1253395	SSC	-1.3	-1.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.272	32	0	0	NA	11qE2	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr11	100498252	100498252	A	G	ENSMUST00000107389.7	1	ENSMUSG00000020917	missense	V/A	568	Acly	ENSMUST00000107389.7:c.1703T>C	ENSMUSP00000103012.1:p.Val568Ala	H-2-Kb	8	11	1	ALINFASL	VLINFASL	NetMHC	16.28	5.31	0.326	115	0.322	34.371	10.662	0.31	5.31	16.28	8.3	24.1	14.41252256	54.29252	13.02386842	44.64162552	SSC	1.771428571	1.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.316	115	0	0	NA	11qD	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr11	115822071	115822071	GA	G	ENSMUST00000021134.9	1	ENSMUSG00000020781	FS	R/X	461	Tsen54	ENSMUST00000021134.9:c.1388del	ENSMUSP00000021134.3:p.Asn463ThrfsTer28	H-2-Kb	8	8	6	ATFRKTAL	ATFRKNSP	NetMHCpan	107.7	12589.3	116.892	88	0.148	143.935	9990.463	69.41	19710.55	129.11	12589.3	107.7	7391.626265	173.6760767	7290.209351	158.7596015	SSC	-0.2	-0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.168	88	0	0	NA	11qE2	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	0.719537954	sgMsh2	cell line
chr11	119440808	119440808	A	G	ENSMUST00000093902.11	5	ENSMUSG00000070327	missense	H/R	2282	Rnf213	ENSMUST00000093902.11:c.6845A>G	ENSMUSP00000091429.5:p.His2282Arg	H-2-Kb	8	5	7	MTFIGFRL	MTFIGFHL	NetMHCpan	34.6	36.6	1.058	198	0.258	68.355	87.554	1.281	140.39	135.54	36.6	34.6	96.99291239	74.94454029	78.11600059	61.76465217	SSC	1.185714286	1.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.256	198	0	0	NA	11qE2	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr11	98152821	98152821	AC	A	ENSMUST00000092735.11	1	ENSMUSG00000018160	FS	V/X	595	Med1	ENSMUST00000092735.11:c.1783del	ENSMUSP00000090411.5:p.Val595PhefsTer7	H-2-Kb	8	9	3	FMFFFSFF	FMVFFFFF	SMMPMBEC	119.053	1020.328	8.57	50	0.24	135.28	1271.189	9.397	1321.31	138.51	4097.2	147.2	1221.068422	132.0504848	1020.328459	119.0529058	SSC	2.157142857	2.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.244	50	0	0	NA	11qD	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr12	13390999	13390999	AC	A	ENSMUST00000042953.9	5	ENSMUSG00000020576	FS	T/X	1110	Nbas	ENSMUST00000042953.9:c.3329del	ENSMUSP00000036082.8:p.Thr1110SerfsTer31	H-2-Kb	8	30	0	VAWKTSTL	NA	NetMHCpan	102.8	NA	NA	109	0.183	200.5	NA	NA	NA	164.55	NA	102.8	NA	289.5609548	NA	236.4503711	SSC	-0.2	-0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.176	109	0	0	NA	12qA1.1	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.753801666	sgMsh2	cell line
chr11	96581344	96581344	A	C	ENSMUST00000107662.8	1	ENSMUSG00000057058	missense	T/P	148	Skap1	ENSMUST00000107662.8:c.442A>C	ENSMUSP00000103289.2:p.Thr148Pro	H-2-Kb	8	7	5	SRYSPAHL	SRYSTAHL	SMM	174.88	169.723	0.971	222	0.225	210.344	161.194	0.766	151.88	220.36	782.2	1165.3	169.7227266	174.8799418	152.6651821	200.3272365	SSC	-0.828571429	-0.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.229	222	0	0	NA	11qD	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	0.980798758	sgMsh2	cell line
chr11	96581344	96581344	A	C	ENSMUST00000107662.8	1	ENSMUSG00000057058	missense	T/P	148	Skap1	ENSMUST00000107662.8:c.442A>C	ENSMUSP00000103289.2:p.Thr148Pro	H-2-Kb	8	9	3	YSPAHLAL	YSTAHLAL	SMM	236.45	371.313	1.57	222	0.225	284.425	775.994	2.728	1039.72	259.55	1012.8	309.3	371.3128679	236.4503711	539.1877292	350.5419514	SSC	0.8	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.229	222	0	0	NA	11qD	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	0.980798758	sgMsh2	cell line
chr11	96581344	96581344	A	C	ENSMUST00000107662.8	1	ENSMUSG00000057058	missense	T/P	148	Skap1	ENSMUST00000107662.8:c.442A>C	ENSMUSP00000103289.2:p.Thr148Pro	H-2-Kb	8	5	7	SSSRYSPA	SSSRYSTA	NetMHC	265.14	1280.31	4.829	222	0.225	396.626	1171.908	2.955	1280.31	265.14	1961.3	1087.9	1063.506136	425.3436955	963.2521787	367.908651	SSC	-1.142857143	-1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.229	222	0	0	NA	11qD	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	0.980798758	sgMsh2	cell line
chr11	72058021	72058021	G	A	ENSMUST00000075258.12	1	ENSMUSG00000040543	missense	R/W	769	Pitpnm3	ENSMUST00000075258.12:c.2305C>T	ENSMUSP00000074737.6:p.Arg769Trp	H-2-Kb	8	9	3	VVWHWQDL	VVRHWQDL	NetMHCpan	164	1200.7	7.321	85	0.235	222.002	907.754	4.089	1202.31	270.69	1200.7	164	614.8086937	260.4593785	592.570463	183.5439188	SSC	-0.571428571	-0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.244	85	0	0	NA	11qB4	chr11-69600961-82929860	4	3	1	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr11	80170715	80170715	G	A	ENSMUST00000021050.13	1	ENSMUSG00000020709	missense	R/H	232	Adap2	ENSMUST00000021050.13:c.695G>A	ENSMUSP00000021050.7:p.Arg232His	H-2-Kb	8	10	2	AHLQYLKL	ARLQYLKL	SMM	206.89	549.212	2.655	137	0.109	245.659	1134.326	4.617	1719.44	279.12	2162.2	288.8	549.2119775	206.8902384	516.1072977	212.1973715	SSC	-0.071428571	-0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.131	137	0	0	NA	11qB5	chr11-69600961-82929860	4	3	1	0.96	4.11164545	NA	1	0.561068285	sgMsh2	cell line
chr11	69478799	69478799	T	G	ENSMUST00000108659.1	5	ENSMUSG00000005237	missense	E/A	1617	Dnah2	ENSMUST00000108659.1:c.4850A>C	ENSMUSP00000104299.1:p.Glu1617Ala	H-2-Kb	8	6	6	SSSKWAAV	SSSKWEAV	NetMHC	389.22	5810.43	14.928	64	0.125	411.521	4252.471	10.334	5810.43	389.22	5555.5	961.1	2949.442949	422.4156501	2908.975074	400.6268017	SSC	0.2	0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.134	64	0	0	NA	11qB3	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	0.573917177	sgMsh2	cell line
chr11	98488928	98488928	GT	G	ENSMUST00000103141.3	5	ENSMUSG00000018168	FS	K/X	171	Ikzf3	ENSMUST00000103141.3:c.513del	ENSMUSP00000099430.3:p.Lys171AsnfsTer88	H-2-Kb	8	68	0	RTLTWGTL	NA	SMMPMBEC	208.324	NA	NA	68	0.294	253.828	NA	NA	NA	456.15	NA	261.2	NA	246.456343	NA	208.324333	SSC	0.6	0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.294	68	0	0	NA	11qD	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr11	116023510	116023510	C	A	ENSMUST00000106454.7	5	ENSMUSG00000016559	missense	G/V	103	H3f3b	ENSMUST00000106454.7:c.308G>T	ENSMUSP00000102062.1:p.Gly103Val	H-2-Kb	8	11	1	VLFEDTNL	GLFEDTNL	SMMPMBEC	139.553	1457.941	10.447	150	0.173	257.434	4738.713	18.408	11220.79	524.1	7134.6	368.4	2342.825811	146.4670721	1457.94117	139.5532644	SSC	-0.114285714	-0.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.175	150	0	0	NA	11qE2	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	0.749518702	sgMsh2	cell line
chr11	117772845	117772845	T	C	ENSMUST00000026659.9	1	ENSMUSG00000025572	missense	I/V	514	Tmc6	ENSMUST00000026659.9:c.1540A>G	ENSMUSP00000026659.3:p.Ile514Val	H-2-Kb	8	10	2	LVLKMAVL	LILKMAVL	SMMPMBEC	395.13	281.67	0.713	79	0.266	457.257	401.56	0.878	565.93	825.08	490.7	423.9	312.4208431	490.6140712	281.6696149	395.1299959	SSC	2.257142857	2.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.257	79	0	0	NA	11qE2	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr11	94334532	94334532	A	G	ENSMUST00000107818.8	5	ENSMUSG00000020864	missense	T/A	130	Ankrd40	ENSMUST00000107818.8:c.388A>G	ENSMUSP00000103448.2:p.Thr130Ala	H-2-Kb	8	6	6	FPFIYAPA	FPFIYTPA	SMMPMBEC	111.363	324.893	2.917	137	0.263	485.551	890.63	1.834	2975.36	844.12	1418.4	870.2	362.8607551	126.9813676	324.8927349	111.3627636	SSC	0.914285714	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.256	137	0	0	NA	11qD	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr12	51774736	51774736	A	C	ENSMUST00000042052.8	5	ENSMUSG00000035247	missense	L/V	1057	Hectd1	ENSMUST00000042052.8:c.3169T>G	ENSMUSP00000046766.8:p.Leu1057Val	H-2-Kb	9	3	9	SSFVFVRKV	SSFVFVRKL	NetMHC	11.42	5.76	0.504	238	0.134	102.897	45.252	0.44	5.76	11.42	5.5	15.2	84.74420308	190.5943402	91.88613834	205.7074402	SSC	1.4	1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.135	238	0	0	NA	12qB3	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.578200141	sgMsh2	cell line
chr11	98488928	98488928	GT	G	ENSMUST00000103141.3	5	ENSMUSG00000018168	FS	K/X	171	Ikzf3	ENSMUST00000103141.3:c.513del	ENSMUSP00000099430.3:p.Lys171AsnfsTer88	H-2-Kb	9	62	0	AAELFFRTL	NA	NetMHC	89.08	NA	NA	68	0.294	200.048	NA	NA	NA	89.08	NA	91.6	NA	330.4532291	NA	308.4963287	SSC	0.642857143	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.294	68	0	0	NA	11qD	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr11	106149600	106149600	AC	A	ENSMUST00000002044.9	1	ENSMUSG00000020700	FS	D/X	330	Map3k3	ENSMUST00000002044.9:c.994del	ENSMUSP00000002044.9:p.Arg332ValfsTer75	H-2-Kb	9	5	9	VAVQYLDPV	VAVQYLDPR	NetMHC	103.32	4484.42	43.403	143	0.056	225.888	3275.495	14.501	4484.42	103.32	11112.2	198.7	1820.161819	276.7642557	2066.569426	253.0754397	SSC	0.328571429	0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.058	143	0	0	NA	11qE1	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	0.248411913	sgMsh2	cell line
chr11	96581344	96581344	A	C	ENSMUST00000107662.8	1	ENSMUSG00000057058	missense	T/P	148	Skap1	ENSMUST00000107662.8:c.442A>C	ENSMUSP00000103289.2:p.Thr148Pro	H-2-Kb	9	9	3	YSPAHLALM	YSTAHLALM	NetMHC	132.73	417.47	3.145	222	0.225	249.158	480.61	1.929	417.47	132.73	534.5	167.1	455.1033161	331.2150024	506.1159219	397.4202571	SSC	1.185714286	1.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.229	222	0	0	NA	11qD	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	0.980798758	sgMsh2	cell line
chr11	80170715	80170715	G	A	ENSMUST00000021050.13	1	ENSMUSG00000020709	missense	R/H	232	Adap2	ENSMUST00000021050.13:c.695G>A	ENSMUSP00000021050.7:p.Arg232His	H-2-Kb	9	4	8	FNALRAAHL	FNALRAARL	NetMHC	212.45	183.79	0.865	137	0.109	290.258	272.082	0.937	183.79	212.45	273.7	288.7	270.4643321	291.8166046	322.2923521	361.6179668	SSC	0.757142857	0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.131	137	0	0	NA	11qB5	chr11-69600961-82929860	4	3	1	0.96	4.11164545	NA	1	0.561068285	sgMsh2	cell line
chr11	80170715	80170715	G	A	ENSMUST00000021050.13	1	ENSMUSG00000020709	missense	R/H	232	Adap2	ENSMUST00000021050.13:c.695G>A	ENSMUSP00000021050.7:p.Arg232His	H-2-Kb	9	9	3	AAHLQYLKL	AARLQYLKL	NetMHCpan	200.8	397.4	1.979	137	0.109	245.507	319.289	1.301	293.72	214.16	397.4	200.8	320.7081525	296.558243	317.8703353	276.8534884	SSC	-0.071428571	0.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.131	137	0	0	NA	11qB5	chr11-69600961-82929860	4	3	1	0.96	4.11164545	NA	1	0.561068285	sgMsh2	cell line
chr11	87035223	87035223	T	C	ENSMUST00000020804.7	1	ENSMUSG00000061666	missense	T/A	299	Gdpd1	ENSMUST00000020804.7:c.895A>G	ENSMUSP00000020804.7:p.Thr299Ala	H-2-Kb	9	9	3	VMADYPTKL	VMTDYPTKL	NetMHCpan	134	233	1.739	113	0.248	178.725	248.628	1.391	288.51	222.06	233	134	258.8868552	177.8729877	238.3691237	179.5767056	SSC	-0.771428571	0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.239	113	0	0	NA	11qC	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr12	11208443	11208443	A	G	ENSMUST00000049877.2	NA	ENSMUSG00000047002	missense	I/T	169	Msgn1	ENSMUST00000049877.2:c.506T>C	ENSMUSP00000055001.1:p.Ile169Thr	H-2-Kb	9	6	6	YTIKYTGEL	YTIKYIGEL	NetMHCpan	165.5	99.4	0.601	167	0.024	414.244	378.88	0.915	269.95	298.52	99.4	165.5	593.0755223	598.5631826	487.8092149	529.9684305	SSC	-0.214285714	-0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.03	167	0	0	NA	12qA1.1	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.12848892	sgMsh2	cell line
chr11	88964817	88964817	AG	A	ENSMUST00000061938.13	1	ENSMUSG00000057534	FS	P/X	140	Elobl	ENSMUST00000061938.13:c.419del	ENSMUSP00000103534.1:p.Pro140LeufsTer29	H-2-Kb	9	21	0	INFLMTTPC	NA	NetMHCpan	235.2	NA	NA	229	0.218	354.488	NA	NA	NA	428.61	NA	235.2	NA	395.4667729	NA	313.5089908	SSC	1.142857143	1.157142857	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.228	229	0	0	NA	11qC	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	0.976515794	sgMsh2	cell line
chr11	115822071	115822071	GA	G	ENSMUST00000021134.9	1	ENSMUSG00000020781	FS	R/X	461	Tsen54	ENSMUST00000021134.9:c.1388del	ENSMUSP00000021134.3:p.Asn463ThrfsTer28	H-2-Kb	9	7	7	VATFRKTAL	VATFRKNSP	SMMPMBEC	250.179	1950.967	7.798	88	0.148	378.231	10698.049	28.284	19445.13	487.24	24150.8	959.7	1180.61963	269.2216614	1950.967344	250.1785091	SSC	-0.2	-0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.168	88	0	0	NA	11qE2	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	0.719537954	sgMsh2	cell line
chr11	98152821	98152821	AC	A	ENSMUST00000092735.11	1	ENSMUSG00000018160	FS	V/X	595	Med1	ENSMUST00000092735.11:c.1783del	ENSMUSP00000090411.5:p.Val595PhefsTer7	H-2-Kb	9	7	5	LEFMFFFSF	LEFMVFFFF	SMM	152.093	1559.948	10.257	50	0.24	326.93	3466.529	10.603	5373.11	500.31	11273.5	2074.9	1559.947563	152.0932709	1337.365144	153.5500634	SSC	2.157142857	2.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.244	50	0	0	NA	11qD	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr11	102886351	102886351	A	G	ENSMUST00000100369.3	NA	ENSMUSG00000075510	missense	H/R	327	Fam187a	ENSMUST00000100369.3:c.980A>G	ENSMUSP00000097938.3:p.His327Arg	H-2-Kb	9	7	5	VFIDRGNHL	VFIDHGNHL	SMMPMBEC	265.003	291.239	1.099	141	0.312	419.914	404.055	0.962	516.87	568.74	648.9	885.7	280.61443	271.0878168	291.2393144	265.0025177	SSC	-0.971428571	-0.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.304	141	0	0	NA	11qE1	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr11	105281103	105281103	C	A	ENSMUST00000106941.8	1	ENSMUSG00000020694	missense	L/M	700	Tlk2	ENSMUST00000106941.8:c.2098C>A	ENSMUSP00000102554.2:p.Leu700Met	H-2-Kb	9	11	1	MAYRKEDRI	LAYRKEDRI	SMMPMBEC	333.618	333.618	1	69	0.203	456.786	545.641	1.195	710.12	573.86	1874.3	1143.1	381.1623536	339.7113053	333.6184037	333.6184037	SSC	-2.385714286	-1.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.199	69	0	0	NA	11qE1	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	0.852309838	sgMsh2	cell line
chr11	106149600	106149600	AC	A	ENSMUST00000002044.9	1	ENSMUSG00000020700	FS	D/X	330	Map3k3	ENSMUST00000002044.9:c.994del	ENSMUSP00000002044.9:p.Arg332ValfsTer75	H-2-Kb	9	18	0	VQTVRMPSL	NA	NetMHCpan	416.3	NA	NA	143	0.056	453.614	NA	NA	NA	635.44	NA	416.3	NA	456.1524376	NA	451.0762902	SSC	0.328571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.058	143	0	0	NA	11qE1	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	0.248411913	sgMsh2	cell line
chr12	59016937	59016937	AT	A	ENSMUST00000021379.7	1	ENSMUSG00000060121	FS	H/X	98	Gemin2	ENSMUST00000021379.7:c.298del	ENSMUSP00000021379.6:p.Ser100GlnfsTer73	H-2-Db	9	44	0	KAGKNFVWV	NA	NetMHC	86.09	NA	NA	234	0.03	384.807	NA	NA	NA	86.09	NA	198.7	NA	637.7052612	NA	570.9130891	SSC	0.357142857	0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.036	234	0	0	NA	12qC1	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.154186704	sgMsh2	cell line
chr12	55490467	55490467	A	G	ENSMUST00000021413.8	1	ENSMUSG00000021025	missense	M/T	279	Nfkbia	ENSMUST00000021413.8:c.836T>C	ENSMUSP00000021413.7:p.Met279Thr	H-2-Db	9	4	8	LTLENLQTL	LTLENLQML	NetMHCpan	91.9	614.9	6.691	144	0.125	148.476	602.259	4.056	939.09	126.1	614.9	91.9	555.4180636	170.8519736	589.6170044	179.295752	SSC	0.028571429	0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.129	144	0	0	NA	12qC1	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.552502357	sgMsh2	cell line
chr13	44923269	44923269	T	C	ENSMUST00000072329.14	1	ENSMUSG00000057531	missense	M/V	231	Dtnbp1	ENSMUST00000072329.14:c.691A>G	ENSMUSP00000072170.7:p.Met231Val	H-2-Db	9	10	2	SVEVNVDVL	SMEVNVDVL	NetMHCpan	224.8	73.1	0.325	64	0.094	276.933	66.317	0.239	31.1	515.13	73.1	224.8	67.08416215	293.5080385	65.54959308	260.3574444	SSC	0.842857143	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.111	64	0	0	NA	13qA5	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	0.475409005	sgMsh2	cell line
chr12	73108786	73108786	G	A	ENSMUST00000043208.7	1	ENSMUSG00000034460	missense	P/L	469	Six4	ENSMUST00000043208.7:c.1406C>T	ENSMUSP00000036150.6:p.Pro469Leu	H-2-Kb	8	4	8	SVVTFTTL	SVVTFTTP	NetMHCpan	12.7	5794.2	456.236	121	0.132	37.441	3696.4	98.725	11329	13.26	5794.2	12.7	1583.944645	65.42443789	1598.600704	61.62259741	SSC	1.842857143	1.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.125	121	0	0	NA	12qC3	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.535370501	sgMsh2	cell line
chr12	59016937	59016937	AT	A	ENSMUST00000021379.7	1	ENSMUSG00000060121	FS	H/X	98	Gemin2	ENSMUST00000021379.7:c.298del	ENSMUSP00000021379.6:p.Ser100GlnfsTer73	H-2-Kb	8	72	0	IMYKLVFL	NA	NetMHCpan	16.9	NA	NA	234	0.03	25.226	NA	NA	NA	18.92	NA	16.9	NA	31.53116375	NA	32.71447838	SSC	1.614285714	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.036	234	0	0	NA	12qC1	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.154186704	sgMsh2	cell line
chr12	59016937	59016937	AT	A	ENSMUST00000021379.7	1	ENSMUSG00000060121	FS	H/X	98	Gemin2	ENSMUST00000021379.7:c.298del	ENSMUSP00000021379.6:p.Ser100GlnfsTer73	H-2-Kb	8	33	0	VMWQCQNL	NA	NetMHC	31.19	NA	NA	234	0.03	64.66	NA	NA	NA	31.19	NA	71.9	NA	67.41243274	NA	61.9070344	SSC	-0.457142857	-0.4	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.036	234	0	0	NA	12qC1	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.154186704	sgMsh2	cell line
chr12	76564382	76564382	T	C	ENSMUST00000075249.5	1	ENSMUSG00000052609	missense	V/A	231	Plekhg3	ENSMUST00000075249.5:c.692T>C	ENSMUSP00000074729.4:p.Val231Ala	H-2-Kb	8	10	2	RALKYHLL	RVLKYHLL	NetMHCpan	46.6	48	1.03	156	0.128	81.358	92.716	1.14	72.52	51.61	48	46.6	112.911974	111.1066364	114.482736	123.8055176	SSC	0.685714286	0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.133	156	0	0	NA	12qC3	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.569634213	sgMsh2	cell line
chr12	108361203	108361203	T	C	ENSMUST00000021684.5	1	ENSMUSG00000021259	missense	F/L	425	Cyp46a1	ENSMUST00000021684.5:c.1273T>C	ENSMUSP00000021684.4:p.Phe425Leu	H-2-Kb	8	11	1	LTYFPFSL	FTYFPFSL	NetMHCpan	22.8	31.8	1.395	125	0.2	102.142	85.132	0.833	67.05	60.82	31.8	22.8	103.2143305	143.4630303	134.1961326	157.666708	SSC	0.714285714	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.202	125	0	0	NA	12qF1	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.86515873	sgMsh2	cell line
chr12	113357518	113357518	T	C	ENSMUST00000223179.1	NA	ENSMUSG00000076615	missense	K/R	374	Ighg3	ENSMUST00000223179.1:c.1120A>G	ENSMUSP00000152559.1:p.Lys374Arg	H-2-Kb	8	10	2	VRWIFSSV	VKWIFSSV	NetMHC	129.56	120.6	0.931	120	0.158	141.385	108.131	0.765	120.6	129.56	160.3	222.3	95.66211974	149.1900983	91.56721386	133.5795574	SSC	0.642857143	0.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.161	120	0	0	NA	12qF1	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.689557206	sgMsh2	cell line
chr13	24069691	24069691	C	T	ENSMUST00000072889.11	1	ENSMUSG00000021338	missense	R/H	819	Carmil1	ENSMUST00000072889.11:c.2456G>A	ENSMUSP00000072662.5:p.Arg819His	H-2-Kb	8	7	5	ISIPHTFV	ISIPRTFV	NetMHCpan	135	551.6	4.086	113	0.239	143.522	942.936	6.57	1291.3	147.17	551.6	135	911.4650073	139.8749679	974.4061133	185.6692572	SSC	0.742857143	0.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.238	113	0	0	NA	13qA3.1	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr12	103241372	103241372	A	G	ENSMUST00000074416.9	1	ENSMUSG00000041669	missense	C/R	21	Prima1	ENSMUST00000074416.9:c.61T>C	ENSMUSP00000074017.3:p.Cys21Arg	H-2-Kb	8	6	6	SLLLHRAL	SLLLHCAL	SMM	187.819	205.466	1.094	63	0.079	282.105	293.337	1.04	488	344.05	343.6	379	205.466016	187.8192059	243.0748352	220.1608027	SSC	1.328571429	1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.084	63	0	0	NA	12qE	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.359768977	sgMsh2	cell line
chr12	79261656	79261656	C	T	ENSMUST00000021547.7	1	ENSMUSG00000066440	missense	D/N	1705	Zfyve26	ENSMUST00000021547.7:c.5113G>A	ENSMUSP00000021547.6:p.Asp1705Asn	H-2-Kb	8	6	6	IGFTLNEV	IGFTLDEV	NetMHCpan	303.9	1187.3	3.907	159	0.195	375.252	970.102	2.585	1333.11	383.96	1187.3	303.9	696.209588	367.908651	752.9046857	382.5956254	SSC	0.385714286	0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.202	159	0	0	NA	12qC3	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.86515873	sgMsh2	cell line
chr13	9662244	9662244	CA	C	ENSMUST00000174552.7	1	ENSMUSG00000048264	FS	K/X	1468	Dip2c	ENSMUST00000174552.7:c.4405del	ENSMUSP00000133806.1:p.Ser1469ValfsTer14	H-2-Kb	8	12	1	VSQNVLSL	NA	SMM	218.645	NA	NA	125	0.336	371.865	NA	NA	NA	425.5	NA	654	NA	218.6452264	NA	318.2291802	SSC	0.457142857	0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.322	125	0	0	NA	13qA1	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr12	54685943	54685943	TG	T	ENSMUST00000161592.7	1	ENSMUSG00000054302	FS	H/X	127	Eapp	ENSMUST00000161592.7:c.381del	ENSMUSP00000123698.1:p.His127GlnfsTer52	H-2-Kb	8	53	0	SLFQTVML	NA	SMMPMBEC	306.719	NA	NA	200	0.325	372.068	NA	NA	NA	617.01	NA	379.6	NA	364.5356443	NA	306.71852	SSC	1.757142857	1.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.303	200	0	0	NA	12qC1	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	2	1	sgMsh2	cell line
chr12	116142882	116142882	A	G	ENSMUST00000011315.9	1	ENSMUSG00000011171	missense	Q/R	366	Vipr2	ENSMUST00000011315.9:c.1097A>G	ENSMUSP00000011315.3:p.Gln366Arg	H-2-Kb	8	6	6	CVGSFRGL	CVGSFQGL	SMMPMBEC	373.027	572.453	1.535	238	0.113	441.993	621.177	1.405	761.75	617.03	669.9	510.1	519.6847826	373.8866857	572.4532166	373.0267702	SSC	0.671428571	0.671428571	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.111	238	0	0	NA	12qF2	chr12-116047424-119465464	5	4	1	0.96	4.11164545	NA	1	0.475409005	sgMsh2	cell line
chr13	23482748	23482748	T	A	ENSMUST00000110433.9	1	ENSMUSG00000053216	missense	Q/L	229	Btn2a2	ENSMUST00000110433.9:c.686A>T	ENSMUSP00000106063.3:p.Gln229Leu	H-2-Kb	8	4	8	VNNTLLSL	VNNTLLSQ	SMM	292.914	11796.142	40.272	65	0.369	426.356	16762.841	39.317	21729.54	834.12	25042.5	477.1	11796.14222	292.9139126	6756.783445	375.6124682	SSC	0.414285714	0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.349	65	0	0	NA	13qA3.1	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr12	72477207	72477207	A	G	ENSMUST00000162159.7	1	ENSMUSG00000021090	missense	N/S	729	Lrrc9	ENSMUST00000162159.7:c.2186A>G	ENSMUSP00000124394.1:p.Asn729Ser	H-2-Kb	8	5	7	DVYHLYSL	DVYHLYNL	NetMHCpan	351.6	232.6	0.662	171	0.199	440.275	217.158	0.493	455.13	926.68	232.6	351.6	170.8991883	419.5077612	201.7158386	461.0414792	SSC	0.742857143	0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.192	171	0	0	NA	12qC3	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.82232909	sgMsh2	cell line
chr12	72304133	72304133	A	T	ENSMUST00000078505.13	1	ENSMUSG00000021087	missense	F/Y	434	Rtn1	ENSMUST00000078505.13:c.1301T>A	ENSMUSP00000077594.7:p.Phe434Tyr	H-2-Kb	9	6	6	SGYVSYGHV	SGYVSFGHV	NetMHC	9.91	11.65	1.176	68	0.118	79.315	105.209	1.326	11.65	9.91	20.7	23.7	189.7186388	134.9304597	209.0499173	147.6556263	SSC	0.2	0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.132	68	0	0	NA	12qC3	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.565351249	sgMsh2	cell line
chr12	59016937	59016937	AT	A	ENSMUST00000021379.7	1	ENSMUSG00000060121	FS	H/X	98	Gemin2	ENSMUST00000021379.7:c.298del	ENSMUSP00000021379.6:p.Ser100GlnfsTer73	H-2-Kb	9	72	0	IMYKLVFLL	NA	SMM	46.463	NA	NA	234	0.03	52.197	NA	NA	NA	60.54	NA	48.9	NA	46.46329446	NA	55.49450731	SSC	1.885714286	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.036	234	0	0	NA	12qC1	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.154186704	sgMsh2	cell line
chr12	76564382	76564382	T	C	ENSMUST00000075249.5	1	ENSMUSG00000052609	missense	V/A	231	Plekhg3	ENSMUST00000075249.5:c.692T>C	ENSMUSP00000074729.4:p.Val231Ala	H-2-Kb	9	10	2	RALKYHLLL	RVLKYHLLL	NetMHCpan	57.7	70.7	1.225	156	0.128	181.236	223.936	1.236	125.58	83.7	70.7	57.7	322.9311952	287.1507798	322.2923521	278.7725451	SSC	0.971428571	0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.133	156	0	0	NA	12qC3	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.569634213	sgMsh2	cell line
chr12	59016937	59016937	AT	A	ENSMUST00000021379.7	1	ENSMUSG00000060121	FS	H/X	98	Gemin2	ENSMUST00000021379.7:c.298del	ENSMUSP00000021379.6:p.Ser100GlnfsTer73	H-2-Kb	9	53	0	KGYVLKGPL	NA	NetMHC	86.61	NA	NA	234	0.03	256.845	NA	NA	NA	86.61	NA	129	NA	384.6892055	NA	400.1750427	SSC	0.657142857	0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.036	234	0	0	NA	12qC1	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.154186704	sgMsh2	cell line
chr12	73108786	73108786	G	A	ENSMUST00000043208.7	1	ENSMUSG00000034460	missense	P/L	469	Six4	ENSMUST00000043208.7:c.1406C>T	ENSMUSP00000036150.6:p.Pro469Leu	H-2-Kb	9	4	8	SVVTFTTLV	SVVTFTTPV	NetMHC	133.43	58.98	0.442	121	0.132	332.202	220.794	0.665	58.98	133.43	75.9	198.7	365.6874028	465.7040341	414.2380608	577.0985724	SSC	1.842857143	1.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.125	121	0	0	NA	12qC3	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.535370501	sgMsh2	cell line
chr12	59016937	59016937	AT	A	ENSMUST00000021379.7	1	ENSMUSG00000060121	FS	H/X	98	Gemin2	ENSMUST00000021379.7:c.298del	ENSMUSP00000021379.6:p.Ser100GlnfsTer73	H-2-Kb	9	71	0	SIMYKLVFL	NA	NetMHC	165.77	NA	NA	234	0.03	231.074	NA	NA	NA	165.77	NA	213.2	NA	248.9487787	NA	267.4545558	SSC	1.614285714	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.036	234	0	0	NA	12qC1	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.154186704	sgMsh2	cell line
chr12	73108786	73108786	G	A	ENSMUST00000043208.7	1	ENSMUSG00000034460	missense	P/L	469	Six4	ENSMUST00000043208.7:c.1406C>T	ENSMUSP00000036150.6:p.Pro469Leu	H-2-Kb	9	6	6	VTFTTLVQI	VTFTTPVQI	NetMHC	182.12	518.16	2.845	121	0.132	240.023	659.413	2.747	518.16	182.12	770.1	233.3	729.6422938	309.8203926	589.1827186	246.7459312	SSC	1.485714286	1.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.125	121	0	0	NA	12qC3	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.535370501	sgMsh2	cell line
chr12	110666605	110666605	A	G	ENSMUST00000018851.13	1	ENSMUSG00000018707	missense	I/V	4617	Dync1h1	ENSMUST00000018851.13:c.13849A>G	ENSMUSP00000018851.7:p.Ile4617Val	H-2-Kb	9	3	9	LNFTRADLV	LNFTRADLI	SMMPMBEC	470.165	485.568	1.033	116	0.147	498.16	522.734	1.049	648.78	574.37	443.7	489.2	559.8993973	507.1191374	485.5679351	470.1646793	SSC	0.557142857	0.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.161	116	0	0	NA	12qF1	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.689557206	sgMsh2	cell line
chr13	34919785	34919785	T	C	ENSMUST00000223834.1	NA	ENSMUSG00000021414	missense	K/R	27	Fam217a	ENSMUST00000223834.1:c.80A>G	ENSMUSP00000153297.1:p.Lys27Arg	H-2-Kb	9	7	5	CAFDRASWL	CAFDKASWL	SMM	175.837	263.093	1.496	98	0.204	349.958	602.637	1.722	928.38	697.73	774.5	425.6	263.0934282	175.8368925	430.7745129	274.3152803	SSC	-0.185714286	0.014285714	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.216	98	0	0	NA	13qA3.3	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	0.925120226	sgMsh2	cell line
chr13	64794243	64794243	T	C	ENSMUST00000091554.5	5	ENSMUSG00000033063	missense	I/M	224	Cntnap3	ENSMUST00000091554.5:c.672A>G	ENSMUSP00000089140.4:p.Ile224Met	H-2-Db	9	3	9	KAMQNSGIM	KAMQNSGII	NetMHC	26.19	22.66	0.865	137	0.307	85.851	80.049	0.932	22.66	26.19	28.1	26.3	158.3507045	155.1029293	131.9988052	145.4018727	SSC	0.014285714	0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.302	137	0	0	NA	13qB3	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr14	118043133	118043133	A	G	ENSMUST00000022725.3	1	ENSMUSG00000022129	missense	V/A	157	Dct	ENSMUST00000022725.3:c.470T>C	ENSMUSP00000022725.2:p.Val157Ala	H-2-Db	9	10	2	YAITTQHWL	YVITTQHWL	NetMHC	62.94	1533.59	24.366	84	0.19	333.838	2644.338	7.921	1533.59	62.94	1321	80.7	3755.08697	586.9755345	3780.680698	592.3385529	SSC	-0.1	-0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.193	84	0	0	NA	14qE4	chr14-53294676-123299668	4	2	2	0.96	4.11164545	NA	1	0.826612054	sgMsh2	cell line
chr14	12211681	12211681	G	T	ENSMUST00000022264.12	1	ENSMUSG00000021745	missense	V/F	988	Ptprg	ENSMUST00000022264.12:c.2962G>T	ENSMUSP00000022264.6:p.Val988Phe	H-2-Kb	8	7	5	ACYTFRRL	ACYTVRRL	NetMHC	9.12	615.69	67.51	99	0.242	16.84	448.033	26.605	615.69	9.12	704.4	19.4	280.3754606	20.35822922	213.6682534	14.28038776	SSC	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.24	99	0	0	NA	14qA1	chr14-7548571-41174827	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr14	50361523	50361523	T	G	ENSMUST00000185091.1	2	ENSMUSG00000051969	missense	L/R	322	Tlr11	ENSMUST00000185091.1:c.965T>G	ENSMUSP00000138814.1:p.Leu322Arg	H-2-Kb	8	6	6	KALEFRSL	KALEFLSL	NetMHC	19.44	41.53	2.136	209	0.23	44.749	61.57	1.376	41.53	19.44	28.8	28.3	81.60936526	61.19839043	97.21650414	72.06759014	SSC	0.485714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.23	209	0	0	NA	14qC1	chr14-44852972-51204411	4	2	2	0.96	4.11164545	NA	1	0.985081722	sgMsh2	cell line
chr13	110399390	110399390	T	C	ENSMUST00000022212.8	1	ENSMUSG00000021701	missense	Y/H	543	Plk2	ENSMUST00000022212.8:c.1627T>C	ENSMUSP00000022212.7:p.Tyr543His	H-2-Kb	8	8	4	TVHHYAEL	TVHYYAEL	NetMHC	32.47	16.81	0.518	204	0.338	51.941	46.173	0.889	16.81	32.47	18.6	34.1	95.22259222	94.56708451	73.74625996	69.78145169	SSC	-0.2	-0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.329	204	0	0	NA	13qD2.1	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr14	52036009	52036009	A	G	ENSMUST00000214071.1	5	ENSMUSG00000044286	missense	M/T	34	Olfr221	ENSMUST00000214071.1:c.101T>C	ENSMUSP00000150675.1:p.Met34Thr	H-2-Kb	8	10	2	VTYAITVL	VMYAITVL	NetMHCpan	26.2	23.8	0.908	85	0.212	60.149	92.464	1.537	54.39	47.73	23.8	26.2	137.3219621	75.63799359	130.5389154	72.56713881	SSC	1.657142857	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.231	85	0	0	NA	14qC2	chr14-51819994-52811780	4	2	2	0.96	4.11164545	NA	1	0.989364686	sgMsh2	cell line
chr13	100811369	100811369	CA	C	ENSMUST00000067246.5	1	ENSMUSG00000021629	FS	F/X	500	Slc30a5	ENSMUST00000067246.5:c.1500del	ENSMUSP00000065764.4:p.Phe500LeufsTer10	H-2-Kb	8	6	6	IVIAFLCL	IVIAFFVF	SMMPMBEC	37.822	251.038	6.637	69	0.145	40.717	350.893	8.618	384.95	48.89	364.7	38.9	337.0854446	42.53436955	251.0383085	37.82160895	SSC	3.342857143	3.442857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.141	69	0	0	NA	13qD1	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	0.603897925	sgMsh2	cell line
chr14	110750452	110750452	C	A	ENSMUST00000078386.3	1	ENSMUSG00000045871	missense	V/F	608	Slitrk6	ENSMUST00000078386.3:c.1822G>T	ENSMUSP00000077492.2:p.Val608Phe	H-2-Kb	8	9	3	LSFLILGL	LSVLILGL	NetMHCpan	51.6	680.5	13.188	179	0.307	120.09	1481.953	12.34	1838.46	106.6	680.5	51.6	1797.794304	193.9724271	1166.11129	133.5795574	SSC	2.5	2.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.315	179	0	0	NA	14qE3	chr14-53294676-123299668	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr14	65975611	65975611	T	G	ENSMUST00000022616.13	1	ENSMUSG00000022037	missense	F/V	149	Clu	ENSMUST00000022616.13:c.445T>G	ENSMUSP00000022616.6:p.Phe149Val	H-2-Kb	8	8	4	SSPVYFWM	SSPFYFWM	NetMHCpan	60.6	40.4	0.667	154	0.156	147.752	201.93	1.367	223.25	116.55	40.4	60.6	180.6092545	178.9534189	234.2825811	206.8902384	SSC	0.614285714	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.158	154	0	0	NA	14qD1	chr14-53294676-123299668	4	2	2	0.96	4.11164545	NA	1	0.676708314	sgMsh2	cell line
chr13	54221267	54221267	TC	T	ENSMUST00000038101.3	1	ENSMUSG00000034987	FS	S/X	374	Hrh2	ENSMUST00000038101.3:c.1122del	ENSMUSP00000038170.3:p.Phe375SerfsTer53	H-2-Kb	8	26	0	SNHHYISV	NA	NetMHCpan	84.2	NA	NA	53	0.472	192.438	NA	NA	NA	148.97	NA	84.2	NA	235.9065504	NA	249.310173	SSC	-0.471428571	-0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.473	53	0	0	NA	13qB1	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	2	1	sgMsh2	cell line
chr14	50361509	50361509	A	T	ENSMUST00000185091.1	2	ENSMUSG00000051969	missense	K/N	317	Tlr11	ENSMUST00000185091.1:c.951A>T	ENSMUSP00000138814.1:p.Lys317Asn	H-2-Kb	8	11	1	NALEFLSL	KALEFLSL	NetMHCpan	121.9	28.8	0.236	202	0.233	263.215	61.57	0.234	41.53	292.76	28.8	121.9	81.60936526	244.7597495	97.21650414	281.6696149	SSC	1.671428571	1.671428571	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.228	202	0	0	NA	14qC1	chr14-44852972-51204411	4	2	2	0.96	4.11164545	NA	1	0.976515794	sgMsh2	cell line
chr14	13493535	13493535	T	C	ENSMUST00000070323.11	1	ENSMUSG00000056296	missense	C/R	38	Synpr	ENSMUST00000070323.11:c.112T>C	ENSMUSP00000064986.5:p.Cys38Arg	H-2-Kb	8	4	8	AMFAFATR	AMFAFATC	SMM	122.107	89.072	0.729	84	0.286	244.649	89.041	0.364	89.01	316.42	75.5	846.6	89.07175307	122.1068422	99.9401507	172.8781076	SSC	0.842857143	1.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.293	84	0	0	NA	14qA1	chr14-7548571-41174827	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr14	110750452	110750452	C	A	ENSMUST00000078386.3	1	ENSMUSG00000045871	missense	V/F	608	Slitrk6	ENSMUST00000078386.3:c.1822G>T	ENSMUSP00000077492.2:p.Val608Phe	H-2-Kb	8	10	2	SFLILGLL	SVLILGLL	SMM	323.4	361.194	1.117	179	0.307	437.633	328.097	0.75	295	460.56	242.7	496.3	361.1935614	323.3999884	379.0879676	414.7056956	SSC	3.157142857	3.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.315	179	0	0	NA	14qE3	chr14-53294676-123299668	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr14	23436016	23436016	TA	T	ENSMUST00000188285.6	1	ENSMUSG00000063142	FS	Y/X	680	Kcnma1	ENSMUST00000188285.6:c.2038del	ENSMUSP00000140275.1:p.Tyr680ThrfsTer31	H-2-Kb	8	8	4	AFFTARPV	NA	SMM	285.588	NA	NA	90	0.189	464.476	NA	NA	NA	585.6	NA	996.8	NA	285.5880296	NA	343.3523309	SSC	0.685714286	0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.183	90	0	0	NA	14qA3	chr14-7548571-41174827	4	2	2	0.96	4.11164545	NA	1	0.783782414	sgMsh2	cell line
chr14	110750452	110750452	C	A	ENSMUST00000078386.3	1	ENSMUSG00000045871	missense	V/F	608	Slitrk6	ENSMUST00000078386.3:c.1822G>T	ENSMUSP00000077492.2:p.Val608Phe	H-2-Kb	8	7	5	VPLSFLIL	VPLSVLIL	SMM	118.233	1628.321	13.772	179	0.307	335.905	4103.174	12.215	10092.79	784.33	5707.5	504.8	1628.32091	118.2333514	2498.848923	167.0090478	SSC	2.328571429	2.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.315	179	0	0	NA	14qE3	chr14-53294676-123299668	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr13	110399390	110399390	T	C	ENSMUST00000022212.8	1	ENSMUSG00000021701	missense	Y/H	543	Plk2	ENSMUST00000022212.8:c.1627T>C	ENSMUSP00000022212.7:p.Tyr543His	H-2-Kb	9	7	5	KTVHHYAEL	KTVHYYAEL	NetMHC	30.54	13.36	0.437	204	0.338	82.903	57.756	0.697	13.36	30.54	13.2	37.5	116.9795644	145.9183802	102.1527353	128.3068964	SSC	-0.2	-0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.329	204	0	0	NA	13qD2.1	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr13	100061007	100061007	T	A	ENSMUST00000038104.11	5	ENSMUSG00000049658	missense	I/F	957	Bdp1	ENSMUST00000038104.11:c.2869A>T	ENSMUSP00000038321.5:p.Ile957Phe	H-2-Kb	9	7	5	TTGEFCTNL	TTGEICTNL	NetMHC	96.64	2956.27	30.591	161	0.335	266.273	2897.591	10.882	2956.27	96.64	2950	149.5	2845.181656	458.2579416	2047.623004	383.0451784	SSC	0.142857143	0.142857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.336	161	0	0	NA	13qD1	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr13	67542395	67542395	TA	T	ENSMUST00000181892.8	1	ENSMUSG00000095432	FS	Y/X	249	Zfp748	ENSMUST00000181892.8:c.745del	ENSMUSP00000137928.1:p.Tyr249ThrfsTer47	H-2-Kb	9	44	0	VAMPFVHSI	NA	NetMHCpan	32.9	NA	NA	144	0.368	254.832	NA	NA	NA	98.41	NA	32.9	NA	411.2538721	NA	441.8247089	SSC	1.114285714	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.36	144	0	0	NA	13qB3	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr13	95707884	95707884	T	G	ENSMUST00000068603.7	1	ENSMUSG00000021676	missense	K/N	505	Iqgap2	ENSMUST00000068603.7:c.1515A>C	ENSMUSP00000067685.6:p.Lys505Asn	H-2-Kb	9	4	8	LFYTKSQNL	LFYTKSQKL	NetMHC	102.71	231.77	2.257	158	0.348	163.174	227.849	1.396	231.77	102.71	423.3	178.4	223.9288243	147.9483071	214.4124503	180.8214719	SSC	-1.414285714	-0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe	3	0.351	158	0	0	NA	13qD1	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr14	20729830	20729830	C	A	ENSMUST00000223679.1	NA	ENSMUSG00000039308	missense	S/I	114	Ndst2	ENSMUST00000223679.1:c.341G>T	ENSMUSP00000153036.1:p.Ser114Ile	H-2-Kb	9	6	6	SRFRYITEL	SRFRYSTEL	NetMHCpan	100.6	138.2	1.374	158	0.215	199.505	181.841	0.911	92.82	119.04	138.2	100.6	225.4810248	279.9690348	309.920283	299.3987618	SSC	0.157142857	0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	158	0	0	NA	14qA3	chr14-7548571-41174827	4	2	2	0.96	4.11164545	NA	1	0.967949866	sgMsh2	cell line
chr13	54221267	54221267	TC	T	ENSMUST00000038101.3	1	ENSMUSG00000034987	FS	S/X	374	Hrh2	ENSMUST00000038101.3:c.1122del	ENSMUSP00000038170.3:p.Phe375SerfsTer53	H-2-Kb	9	26	0	SNHHYISVL	NA	NetMHCpan	68.7	NA	NA	53	0.472	178.271	NA	NA	NA	141.14	NA	68.7	NA	229.67303	NA	215.4021332	SSC	0.571428571	0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.473	53	0	0	NA	13qB1	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	2	1	sgMsh2	cell line
chr14	110750452	110750452	C	A	ENSMUST00000078386.3	1	ENSMUSG00000045871	missense	V/F	608	Slitrk6	ENSMUST00000078386.3:c.1822G>T	ENSMUSP00000077492.2:p.Val608Phe	H-2-Kb	9	9	3	LSFLILGLL	LSVLILGLL	NetMHC	143.39	1008.91	7.036	179	0.307	175.397	867.6	4.946	1008.91	143.39	1117.4	174.9	726.289892	177.8729877	685.8829388	175.8935847	SSC	3.157142857	3.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.315	179	0	0	NA	14qE3	chr14-53294676-123299668	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr13	84294754	84294754	TA	T	ENSMUST00000057495.9	1	ENSMUSG00000035762	FS	L/X	446	Tmem161b	ENSMUST00000057495.9:c.1343del	ENSMUSP00000055208.7:p.Asn448ThrfsTer15	H-2-Kb	9	9	5	SSLKTSSRL	NA	NetMHC	149.93	NA	NA	91	0.231	357.985	NA	NA	NA	149.93	NA	436	NA	279.9690348	NA	463.713778	SSC	-0.442857143	-0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.236	91	0	0	NA	13qC3	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr13	95707886	95707886	T	G	ENSMUST00000068603.7	1	ENSMUSG00000021676	missense	K/Q	505	Iqgap2	ENSMUST00000068603.7:c.1513A>C	ENSMUSP00000067685.6:p.Lys505Gln	H-2-Kb	9	4	8	LFYTKSQQL	LFYTKSQKL	SMMPMBEC	150.401	214.412	1.426	158	0.348	157.428	227.849	1.447	231.77	154.86	423.3	361.4	223.9288243	159.9963223	214.4124503	150.4007493	SSC	-1.414285714	-0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe	3	0.351	158	0	0	NA	13qD1	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr14	56761852	56761852	A	C	ENSMUST00000022507.12	1	ENSMUSG00000021938	missense	L/V	316	Pspc1	ENSMUST00000022507.12:c.946T>G	ENSMUSP00000022507.5:p.Leu316Val	H-2-Kb	9	11	1	VMLMRQDLM	LMLMRQDLM	SMM	117.249	337.373	2.877	118	0.203	170.678	505.031	2.959	672.69	215.68	1505.6	463.1	337.3727491	117.2492302	325.2744865	125.6753201	SSC	-0.014285714	0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.218	118	0	0	NA	14qC3	chr14-53294676-123299668	4	2	2	0.96	4.11164545	NA	1	0.933686154	sgMsh2	cell line
chr14	21847322	21847322	T	C	ENSMUST00000124549.8	1	ENSMUSG00000021773	missense	S/G	248	Comtd1	ENSMUST00000124549.8:c.742A>G	ENSMUSP00000119330.1:p.Ser248Gly	H-2-Kb	9	7	5	RVYIGLLPL	RVYISLLPL	NetMHCpan	149.5	84.5	0.565	47	0.234	287.931	150.288	0.522	113.03	289.28	84.5	149.5	187.5469475	293.1635689	214.4124503	286.5827198	SSC	1.8	1.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.233	47	0	0	NA	14qA3	chr14-7548571-41174827	4	2	2	0.96	4.11164545	NA	1	0.997930614	sgMsh2	cell line
chr14	52036009	52036009	A	G	ENSMUST00000214071.1	5	ENSMUSG00000044286	missense	M/T	34	Olfr221	ENSMUST00000214071.1:c.101T>C	ENSMUSP00000150675.1:p.Met34Thr	H-2-Kb	9	6	6	VVFLVTYAI	VVFLVMYAI	NetMHC	404.46	257.9	0.638	85	0.212	474.826	410.59	0.865	257.9	404.46	656.7	462	397.2921646	487.6519891	423.8869047	600.1364431	SSC	2.157142857	2.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.231	85	0	0	NA	14qC2	chr14-51819994-52811780	4	2	2	0.96	4.11164545	NA	1	0.989364686	sgMsh2	cell line
chr13	63033045	63033045	T	C	ENSMUST00000091560.10	1	ENSMUSG00000021458	missense	S/P	274	Aopep	ENSMUST00000091560.10:c.820T>C	ENSMUSP00000089148.4:p.Ser274Pro	H-2-Kb	9	5	7	CVYTMGPPI	CVYTMGSPI	NetMHCpan	343.4	246.8	0.719	107	0.308	424.354	333.906	0.787	312.09	444.96	246.8	343.4	355.7214058	403.747643	486.6872848	541.0656958	SSC	0.114285714	0.657142857	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.309	107	0	0	NA	13qB3	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr13	84294754	84294754	TA	T	ENSMUST00000057495.9	1	ENSMUSG00000035762	FS	L/X	446	Tmem161b	ENSMUST00000057495.9:c.1343del	ENSMUSP00000055208.7:p.Asn448ThrfsTer15	H-2-Kb	9	18	0	SFFEDFCHF	NA	SMM	375.068	NA	NA	91	0.231	433.889	NA	NA	NA	507.12	NA	463.9	NA	375.0679891	NA	403.8778168	SSC	0.1	0.442857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.236	91	0	0	NA	13qC3	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr14	55769194	55769194	T	C	ENSMUST00000170223.8	1	ENSMUSG00000022220	missense	T/A	1061	Adcy4	ENSMUST00000170223.8:c.3181A>G	ENSMUSP00000130530.1:p.Thr1061Ala	H-2-Kb	9	10	2	CAYFLNTDL	CTYFLNTDL	NetMHCpan	437.6	426.9	0.976	77	0.286	446.369	595.703	1.335	661.33	522.88	426.9	437.6	619.5979897	449.8937915	571.8077009	442.8432201	SSC	0.2	0.771428571	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.285	77	0	0	NA	14qC3	chr14-53294676-123299668	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr13	77761927	77761927	G	A	ENSMUST00000163257.8	5	ENSMUSG00000064138	missense	A/T	100	Fam172a	ENSMUST00000163257.8:c.298G>A	ENSMUSP00000133140.1:p.Ala100Thr	H-2-Kb	9	4	8	WNQKRYETL	WNQKRYEAL	SMMPMBEC	335.931	312.069	0.929	67	0.388	475.504	401.646	0.845	401.4	524.32	1301	1165.9	401.8925911	426.6875784	312.0685478	335.930936	SSC	-1.942857143	-1.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.398	67	0	0	NA	13qC1	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr15	38022377	38022377	A	G	ENSMUST00000226414.1	NA	ENSMUSG00000037487	missense	S/P	628	Ubr5	ENSMUST00000226414.1:c.1882T>C	ENSMUSP00000154293.1:p.Ser628Pro	H-2-Db	9	4	8	SSIASSAPM	SSIASSASM	NetMHC	50.68	369.5	7.291	219	0.237	92.853	414.677	4.466	369.5	50.68	341.8	56.4	459.8540333	129.3063938	512.3538453	136.3232716	SSC	0.971428571	0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.241	219	0	0	NA	15qB3.1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr15	96997032	96997032	T	C	ENSMUST00000023101.9	1	ENSMUSG00000022464	missense	I/M	534	Slc38a4	ENSMUST00000023101.9:c.1602A>G	ENSMUSP00000023101.3:p.Ile534Met	H-2-Db	9	7	5	MALIMLDWI	MALIILDWI	NetMHC	61.31	1036.31	16.903	114	0.149	88.964	663.631	7.46	1036.31	61.31	287.6	73.8	715.5170714	150.5289388	611.7443966	104.128593	SSC	2.014285714	2.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.163	114	0	0	NA	15qF1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.698123134	sgMsh2	cell line
chr15	47881537	47881537	A	G	ENSMUST00000100670.9	5	ENSMUSG00000022311	missense	L/P	1458	Csmd3	ENSMUST00000100670.9:c.4373T>C	ENSMUSP00000098235.3:p.Leu1458Pro	H-2-Kb	8	6	6	VSLQFPAF	VSLQFLAF	NetMHC	17.81	31.51	1.769	153	0.17	50.364	58.934	1.17	31.51	17.81	60.6	48.4	60.35871704	53.42444264	57.50955406	52.32870654	SSC	0.757142857	0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.169	153	0	0	NA	15qB3.3	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.723820918	sgMsh2	cell line
chr15	47704155	47704155	T	A	ENSMUST00000100670.9	5	ENSMUSG00000022311	missense	D/V	2204	Csmd3	ENSMUST00000100670.9:c.6611A>T	ENSMUSP00000098235.3:p.Asp2204Val	H-2-Kb	8	4	8	TSLYFHSV	TSLYFHSD	NetMHCpan	23.6	6723.8	284.907	185	0.173	48.966	3329.941	68.005	6179.33	26.03	6723.8	23.6	480.5515695	71.90183929	409.0157201	71.90183929	SSC	0.671428571	0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.183	185	0	0	NA	15qB3.3	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.783782414	sgMsh2	cell line
chr15	91272378	91272378	C	T	ENSMUST00000109283.1	1	ENSMUSG00000036298	missense	A/T	564	Slc2a13	ENSMUST00000109283.1:c.1690G>A	ENSMUSP00000104906.1:p.Ala564Thr	H-2-Kb	8	11	1	TFFLYAGF	AFFLYAGF	NetMHC	34.43	36.39	1.057	66	0.167	41.153	52.14	1.267	36.39	34.43	103.8	82	58.17548331	46.10414792	46.10414792	36.20261985	SSC	1.757142857	1.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.179	66	0	0	NA	15qE3	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.766650558	sgMsh2	cell line
chr14	119139009	119139009	T	C	ENSMUST00000065904.4	1	ENSMUSG00000053465	missense	F/L	199	Hs6st3	ENSMUST00000065904.4:c.595T>C	ENSMUSP00000070394.3:p.Phe199Leu	H-2-Kb	8	4	8	ETWLFSRL	ETWLFSRF	SMMPMBEC	35.624	447.445	12.56	52	0.173	41.155	751.555	18.262	863.91	37.61	639.2	44.7	901.0315536	55.42937734	447.4453509	35.62377999	SSC	0.5	0.5	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.196	52	0	0	NA	14qE4	chr14-53294676-123299668	4	2	2	0.96	4.11164545	NA	1	0.839460946	sgMsh2	cell line
chr15	98543573	98543573	AG	A	ENSMUST00000169707.7	1	ENSMUSG00000011960	FS	L/X	605	Ccnt1	ENSMUST00000169707.7:c.1813del	ENSMUSP00000126874.1:p.Leu605PhefsTer4	H-2-Kb	8	4	8	LNFPFPPF	LNFPFPPL	NetMHCpan	33.2	5.1	0.154	118	0.195	98.642	7.355	0.075	4.66	52.16	5.1	33.2	9.610367602	156.221211	11.55420317	145.1242539	SSC	0.014285714	0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1949	118	0	0	NA	15qF1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.834749686	sgMsh2	cell line
chr15	34839711	34839711	A	G	ENSMUST00000072868.4	1	ENSMUSG00000050963	missense	T/A	407	Kcns2	ENSMUST00000072868.4:c.1219A>G	ENSMUSP00000072645.3:p.Thr407Ala	H-2-Kb	8	10	2	IALIFNKF	ITLIFNKF	NetMHC	147.86	159.21	1.077	146	0.185	272.143	197.83	0.727	159.21	147.86	149.6	170.4	299.0473787	462.1042896	236.4503711	373.8866857	SSC	1.185714286	1.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.185	146	0	0	NA	15qB3.1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.792348342	sgMsh2	cell line
chr14	123515710	123515710	C	A	ENSMUST00000000201.6	5	ENSMUSG00000000197	missense	R/I	288	Nalcn	ENSMUST00000000201.6:c.863G>T	ENSMUSP00000000201.5:p.Arg288Ile	H-2-Kb	8	6	6	VFLMYIAI	VFLMYRAI	SMM	80.675	70.265	0.871	110	0.236	117.27	70.672	0.603	62.95	152.93	94.9	239.3	70.26515361	80.67519058	71.07878574	81.60936526	SSC	2.571428571	2.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.241	110	0	0	NA	14qE5	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	sgMsh2	cell line
chr15	4759828	4759828	A	G	ENSMUST00000162585.7	1	ENSMUSG00000022181	missense	T/A	252	C6	ENSMUST00000162585.7:c.754A>G	ENSMUSP00000124417.1:p.Thr252Ala	H-2-Kb	8	10	2	KAEFYKNL	KTEFYKNL	NetMHCpan	83	74.2	0.894	81	0.247	190.225	156.053	0.82	169.63	155.16	74.2	83	189.1211064	292.2402293	142.4754378	225.2890066	SSC	-0.542857143	-0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.259	81	0	0	NA	15qA1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr15	3325898	3325898	C	A	ENSMUST00000069451.10	1	ENSMUSG00000055737	missense	R/M	301	Ghr	ENSMUST00000069451.10:c.902G>T	ENSMUSP00000069457.4:p.Arg301Met	H-2-Kb	8	4	8	VIFSKQQM	VIFSKQQR	NetMHCpan	188.2	12750.8	67.751	124	0.323	363.498	6741.575	18.546	9458.39	228.41	12750.8	188.2	2790.872523	500.8872766	4024.76011	498.5859086	SSC	-0.357142857	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.325	124	0	0	NA	15qA1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	2	1	sgMsh2	cell line
chr15	23474231	23474231	T	C	ENSMUST00000164787.7	5	ENSMUSG00000040420	missense	V/A	729	Cdh18	ENSMUST00000164787.7:c.2186T>C	ENSMUSP00000130851.1:p.Val729Ala	H-2-Kb	8	10	2	SAPPYDSL	SVPPYDSL	NetMHC	248.33	293.76	1.183	105	0.238	300.788	311.48	1.036	293.76	248.33	329.2	321.2	284.9311953	280.3754606	429.2793522	464.2372661	SSC	-0.457142857	-0.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.247	105	0	0	NA	15qA2	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr15	65857540	65857540	A	C	ENSMUST00000015146.15	1	ENSMUSG00000015002	missense	S/R	670	Efr3a	ENSMUST00000015146.15:c.2008A>C	ENSMUSP00000015146.9:p.Ser670Arg	H-2-Kb	8	11	1	RGYSVERL	SGYSVERL	SMM	216.641	102.74	0.474	127	0.181	252.168	110.215	0.437	79.46	271.13	141	423.4	102.7401038	216.6406749	117.6901185	233.2061504	SSC	-0.357142857	-0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.182	127	0	0	NA	15qD1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.77949945	sgMsh2	cell line
chr15	60917930	60917930	A	G	ENSMUST00000096418.4	1	ENSMUSG00000022347	missense	Y/H	490	A1bg	ENSMUST00000096418.4:c.1468T>C	ENSMUSP00000094151.3:p.Tyr490His	H-2-Kb	8	7	5	YSCRHTAL	YSCRYTAL	SMM	116.343	30.043	0.258	109	0.193	198.555	28.753	0.145	20.01	278.33	51.5	481.2	30.04277187	116.3429308	27.46249558	118.7790917	SSC	-0.157142857	-0.157142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.195	109	0	0	NA	15qD1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.835177982	sgMsh2	cell line
chr15	28346829	28346829	T	C	ENSMUST00000067048.7	5	ENSMUSG00000022262	missense	M/T	2486	Dnah5	ENSMUST00000067048.7:c.7457T>C	ENSMUSP00000069751.6:p.Met2486Thr	H-2-Kb	8	4	8	RLFVFAMT	RLFVFAMM	SMMPMBEC	182.28	37.996	0.208	57	0.193	384.705	30.353	0.079	22.71	798.3	19.8	433.1	47.39581548	336.3101696	37.99618556	182.2804114	SSC	2.371428571	2.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.219	57	0	0	NA	15qB1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.937969118	sgMsh2	cell line
chr15	98543573	98543573	AG	A	ENSMUST00000169707.7	1	ENSMUSG00000011960	FS	L/X	605	Ccnt1	ENSMUST00000169707.7:c.1813del	ENSMUSP00000126874.1:p.Leu605PhefsTer4	H-2-Kb	9	4	8	LNFPFPPFL	LNFPFPPLP	NetMHCpan	20.4	4434.3	217.368	118	0.195	109.169	2677.64	24.527	6146.12	49.64	4434.3	20.4	424.7271271	168.6980257	920.9795777	208.0894201	SSC	1.057142857	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1949	118	0	0	NA	15qF1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.834749686	sgMsh2	cell line
chr15	7247153	7247153	A	G	ENSMUST00000096494.4	1	ENSMUSG00000042961	missense	Y/H	511	Egflam	ENSMUST00000096494.4:c.1531T>C	ENSMUSP00000094238.4:p.Tyr511His	H-2-Kb	9	4	8	ITFRTPLHL	ITFRTPLYL	NetMHCpan	51.9	65	1.252	43	0.442	232.478	263.806	1.135	144.69	97.58	65	51.9	382.9217191	367.3753391	481.1162215	439.7947088	SSC	0.057142857	0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.433	43	0	0	NA	15qA1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	2	1	sgMsh2	cell line
chr15	44546608	44546608	A	G	ENSMUST00000209244.1	5	ENSMUSG00000038725	missense	I/V	2504	Pkhd1l1	ENSMUST00000209244.1:c.7510A>G	ENSMUSP00000147447.1:p.Ile2504Val	H-2-Kb	9	3	9	QSYNRAITV	QSYNRAITI	NetMHC	126.51	181.23	1.433	193	0.15	211.495	223.671	1.058	181.23	126.51	213.4	211.1	233.9429705	211.8897751	287.2433612	278.131386	SSC	0.071428571	0.071428571	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.153	193	0	0	NA	15qB3.2	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.655293494	sgMsh2	cell line
chr15	3325898	3325898	C	A	ENSMUST00000069451.10	1	ENSMUSG00000055737	missense	R/M	301	Ghr	ENSMUST00000069451.10:c.902G>T	ENSMUSP00000069457.4:p.Arg301Met	H-2-Kb	9	4	8	VIFSKQQMI	VIFSKQQRI	NetMHC	128.02	112.77	0.881	124	0.323	167.824	129.667	0.773	112.77	128.02	141	229.5	118.334124	147.6080354	149.021867	188.039895	SSC	-0.357142857	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.325	124	0	0	NA	15qA1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	2	1	sgMsh2	cell line
chr15	38022377	38022377	A	G	ENSMUST00000226414.1	NA	ENSMUSG00000037487	missense	S/P	628	Ubr5	ENSMUST00000226414.1:c.1882T>C	ENSMUSP00000154293.1:p.Ser628Pro	H-2-Kb	9	4	8	SSIASSAPM	SSIASSASM	NetMHC	131.72	468.59	3.557	219	0.237	324.894	631.128	1.943	468.59	131.72	625.3	284.1	636.9568317	365.6874028	798.4541822	466.9280884	SSC	0.971428571	0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.241	219	0	0	NA	15qB3.1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr15	91272378	91272378	C	T	ENSMUST00000109283.1	1	ENSMUSG00000036298	missense	A/T	564	Slc2a13	ENSMUST00000109283.1:c.1690G>A	ENSMUSP00000104906.1:p.Ala564Thr	H-2-Kb	9	10	2	GTFFLYAGF	GAFFLYAGF	SMMPMBEC	134.045	103.813	0.774	66	0.167	141.165	112.343	0.796	135.62	163.24	118	135.4	106.6866308	146.9298381	103.8125837	134.0448089	SSC	1.757142857	1.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.179	66	0	0	NA	15qE3	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.766650558	sgMsh2	cell line
chr14	123515710	123515710	C	A	ENSMUST00000000201.6	5	ENSMUSG00000000197	missense	R/I	288	Nalcn	ENSMUST00000000201.6:c.863G>T	ENSMUSP00000000201.5:p.Arg288Ile	H-2-Kb	9	5	7	WVFLMYIAI	WVFLMYRAI	SMM	126.506	178.694	1.413	110	0.236	190.437	187.572	0.985	117.77	251.38	308	1796.8	178.6940122	126.5056726	196.4490803	129.4941055	SSC	2.571428571	2.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.241	110	0	0	NA	14qE5	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	sgMsh2	cell line
chr15	83852059	83852059	T	C	ENSMUST00000109470.7	1	ENSMUSG00000041708	missense	W/R	218	Mpped1	ENSMUST00000109470.7:c.652T>C	ENSMUSP00000105096.1:p.Trp218Arg	H-2-Kb	9	7	5	WFYGRGFNL	WFYGWGFNL	SMMPMBEC	271.175	367.494	1.355	161	0.155	288.061	378.347	1.313	389.2	290.29	470	406.9	353.2726369	285.8314418	367.4937861	271.1752193	SSC	-0.5	-0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.144	161	0	0	NA	15qE1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.616746817	sgMsh2	cell line
chr15	81640487	81640487	A	C	ENSMUST00000068387.10	1	ENSMUSG00000055024	missense	K/T	1406	Ep300	ENSMUST00000068387.10:c.4217A>C	ENSMUSP00000066789.4:p.Lys1406Thr	H-2-Kb	9	5	7	VHFFRPTCL	VHFFRPKCL	NetMHCpan	109.6	332.9	3.037	213	0.244	143.972	300.751	2.089	761.07	352.63	332.9	109.6	268.6024688	161.1053638	216.8952295	126.8381795	SSC	0.728571429	0.728571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.243	213	0	0	NA	15qE1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr15	4759828	4759828	A	G	ENSMUST00000162585.7	1	ENSMUSG00000022181	missense	T/A	252	C6	ENSMUST00000162585.7:c.754A>G	ENSMUSP00000124417.1:p.Thr252Ala	H-2-Kb	9	9	3	LKAEFYKNL	LKTEFYKNL	NetMHCpan	346.3	741.3	2.141	81	0.247	401.095	672.763	1.677	404.98	353.33	741.3	346.3	653.2960014	448.8590645	692.2293355	521.4948213	SSC	-0.542857143	-0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.259	81	0	0	NA	15qA1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr15	3991830	3991830	T	G	ENSMUST00000046633.9	1	ENSMUSG00000041935	missense	K/T	81	AW549877	ENSMUST00000046633.9:c.242A>C	ENSMUSP00000038476.8:p.Lys81Thr	H-2-Kb	9	4	8	MTYFEENTL	MTYFEENKL	SMM	242.722	307.688	1.268	143	0.217	358.362	418.218	1.167	723.29	579.45	513.4	390.7	307.6876041	242.7224795	323.0353127	326.0243217	SSC	-0.842857143	-0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.212	143	0	0	NA	15qA1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.90798837	sgMsh2	cell line
chr16	16673096	16673096	T	C	ENSMUST00000206365.2	3	ENSMUSG00000048101	missense	K/R	295	Olfr19	ENSMUST00000206365.2:c.884A>G	ENSMUSP00000145655.2:p.Lys295Arg	H-2-Db	9	6	6	YSLRNRDLM	YSLRNKDLM	NetMHC	3.3	4.46	1.352	127	0.268	5.853	8.806	1.505	4.46	3.3	5.9	4.6	11.71170164	7.105914866	14.27479894	9.496640546	SSC	-0.928571429	-0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.279	127	0	0	NA	16qA3	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr15	103462798	103462798	A	C	ENSMUST00000047405.8	1	ENSMUSG00000022488	missense	N/T	239	Nckap1l	ENSMUST00000047405.8:c.716A>C	ENSMUSP00000035400.7:p.Asn239Thr	H-2-Db	9	10	2	ITPANSDTM	INPANSDTM	NetMHC	24.26	56.17	2.315	124	0.266	123.502	236.034	1.911	56.17	24.26	149.5	57.5	322.5670482	189.5047063	348.7947987	191.6769985	SSC	-0.914285714	-0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.27	124	0	0	NA	15qF3	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	sgMsh2	cell line
chr16	3592590	3592590	A	G	ENSMUST00000216259.1	5	ENSMUSG00000051003	missense	S/G	65	Olfr161	ENSMUST00000216259.1:c.193A>G	ENSMUSP00000150825.1:p.Ser65Gly	H-2-Db	9	8	4	FFLGNLSFV	FFLSNLSFV	SMM	191.699	80.282	0.419	220	0.259	456.264	114.023	0.25	99.94	647.94	502	1445.2	80.28233585	191.6990674	128.1061561	264.5879126	SSC	1.414285714	1.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.258	220	0	0	NA	16qA1	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	sgMsh2	cell line
chr17	18304169	18304169	GA	G	ENSMUST00000079206.7	5	ENSMUSG00000079698	FS	K/X	142	Vmn2r93	ENSMUST00000079206.7:c.432del	ENSMUSP00000078200.6:p.Lys144AsnfsTer38	H-2-Kb	8	34	0	ISLNFHRL	NA	NetMHC	3.04	NA	NA	366	0.287	3.466	NA	NA	NA	3.04	NA	4.9	NA	3.378625068	NA	3.554184757	SSC	-0.228571429	-0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.287	366	0	0	NA	17qA3.2	chr17-18105061-20584717	6	3	3	0.96	4.11164545	NA	2	1	sgMsh2	cell line
chr15	101643595	101643595	T	A	ENSMUST00000229963.1	NA	ENSMUSG00000095241	missense	Y/F	468	Gm5478	ENSMUST00000229963.1:c.1403A>T	ENSMUSP00000155269.1:p.Tyr468Phe	H-2-Kb	8	7	5	SSHSFASV	SSHSYASV	NetMHC	6.34	8.19	1.292	137	0.234	20.43	27.345	1.339	8.19	6.34	24.3	16.1	32.26561891	26.28693795	30.39065077	24.75939338	SSC	0.457142857	0.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.243	137	0	0	NA	15qF2	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr17	14670751	14670751	A	G	ENSMUST00000170872.2	1	ENSMUSG00000023885	missense	V/A	1039	Thbs2	ENSMUST00000170872.2:c.3116T>C	ENSMUSP00000128308.1:p.Val1039Ala	H-2-Kb	8	5	7	SSSRFYAV	SSSRFYVV	NetMHC	13.14	84.29	6.415	86	0.256	71.128	166.876	2.346	84.29	13.14	132.5	56.8	201.251905	85.45549615	244.1968177	108.5775406	SSC	0.2	0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.275	86	0	0	NA	17qA2	chr17-3079405-18085536	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr17	20574197	20574197	CA	C	ENSMUST00000169559.2	5	ENSMUSG00000091259	FS	C/X	737	Vmn2r110	ENSMUST00000169559.2:c.2209del	ENSMUSP00000129347.1:p.Cys737AlafsTer78	H-2-Kb	8	33	0	VTPWHSYL	NA	NetMHC	19.7	NA	NA	545	0.226	40.378	NA	NA	NA	19.7	NA	32.7	NA	48.05515695	NA	71.73646964	SSC	-0.671428571	-0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2257	545	0	0	NA	17qA3.2	chr17-18105061-20584717	6	3	3	0.96	4.11164545	NA	2	0.966664977	sgMsh2	cell line
chr17	14670751	14670751	A	G	ENSMUST00000170872.2	1	ENSMUSG00000023885	missense	V/A	1039	Thbs2	ENSMUST00000170872.2:c.3116T>C	ENSMUSP00000128308.1:p.Val1039Ala	H-2-Kb	8	6	6	SSRFYAVM	SSRFYVVM	NetMHCpan	22.1	48.2	2.181	86	0.256	35.479	153.102	4.315	166.33	22.57	48.2	22.1	139.8749679	48.38825938	172.8781076	59.94321055	SSC	0.585714286	0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.275	86	0	0	NA	17qA2	chr17-3079405-18085536	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr16	59201814	59201814	G	T	ENSMUST00000208244.2	2	ENSMUSG00000052537	missense	A/D	204	Olfr198	ENSMUST00000208244.2:c.611C>A	ENSMUSP00000146813.2:p.Ala204Asp	H-2-Kb	8	5	7	LVLIFSDL	LVLIFSAL	NetMHCpan	42.8	18.4	0.43	230	0.213	82.245	26.971	0.328	11.93	47.07	18.4	42.8	37.56124682	135.4378341	35.54184757	117.4194387	SSC	2.114285714	2.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.213	230	0	0	NA	16qC1.3	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	0.912271334	sgMsh2	cell line
chr16	19566134	19566134	T	C	ENSMUST00000215476.1	5	ENSMUSG00000068535	missense	M/V	250	Olfr169	ENSMUST00000215476.1:c.748A>G	ENSMUSP00000150917.1:p.Met250Val	H-2-Kb	8	9	3	VIVYYGPF	VIMYYGPF	NetMHC	58.99	29.11	0.493	427	0.248	130.566	74.698	0.572	29.11	58.99	38.8	91.8	179.3659491	231.6007706	110.5961477	169.3323751	SSC	0.985714286	1.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.256	427	0	0	NA	16qA3	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr16	3592590	3592590	A	G	ENSMUST00000216259.1	5	ENSMUSG00000051003	missense	S/G	65	Olfr161	ENSMUST00000216259.1:c.193A>G	ENSMUSP00000150825.1:p.Ser65Gly	H-2-Kb	8	6	6	MYFFLGNL	MYFFLSNL	NetMHCpan	34	14.7	0.432	220	0.259	89.071	59.088	0.663	49.51	88.66	14.7	34	68.66572344	89.4828896	80.11982647	98.3422182	SSC	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.258	220	0	0	NA	16qA1	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	sgMsh2	cell line
chr17	18304169	18304169	GA	G	ENSMUST00000079206.7	5	ENSMUSG00000079698	FS	K/X	142	Vmn2r93	ENSMUST00000079206.7:c.432del	ENSMUSP00000078200.6:p.Lys144AsnfsTer38	H-2-Kb	8	29	0	LGHYFISL	NA	NetMHCpan	38	NA	NA	366	0.287	130.255	NA	NA	NA	92.73	NA	38	NA	219.6544469	NA	167.7799266	SSC	0.771428571	0.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.287	366	0	0	NA	17qA3.2	chr17-18105061-20584717	6	3	3	0.96	4.11164545	NA	2	1	sgMsh2	cell line
chr16	45748812	45748812	T	C	ENSMUST00000076333.11	1	ENSMUSG00000033149	missense	D/G	1228	Phldb2	ENSMUST00000076333.11:c.3683A>G	ENSMUSP00000075672.5:p.Asp1228Gly	H-2-Kb	8	4	8	RTFSYYAG	RTFSYYAD	SMM	81.234	139.232	1.714	80	0.225	177.36	587.547	3.313	1041.76	237.78	1033.6	231.2	139.2323008	81.23440428	141.4946437	123.5207728	SSC	0.014285714	0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.223	80	0	0	NA	16qB5	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	0.955100974	sgMsh2	cell line
chr17	20502847	20502847	A	AT	ENSMUST00000233982.1	NA	ENSMUSG00000043537	FS	-/X	183-184	Vmn1r225	ENSMUST00000233982.1:c.553dup	ENSMUSP00000156633.1:p.Trp185LeufsTer5	H-2-Kb	8	8	6	VYIAFLGI	VYIAFWVF	NetMHCpan	132.8	2122.5	15.983	218	0.243	315.408	2062.886	6.54	2153.98	265.44	2122.5	132.8	2003.272365	381.7156799	1777.215122	365.3759857	SSC	2.242857143	2.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.235	218	0	0	NA	17qA3.2	chr17-18105061-20584717	6	3	3	0.96	4.11164545	NA	2	1	sgMsh2	cell line
chr17	18304169	18304169	GA	G	ENSMUST00000079206.7	5	ENSMUSG00000079698	FS	K/X	142	Vmn2r93	ENSMUST00000079206.7:c.432del	ENSMUSP00000078200.6:p.Lys144AsnfsTer38	H-2-Kb	8	36	0	LNFHRLLL	NA	NetMHCpan	38.4	NA	NA	366	0.287	466.642	NA	NA	NA	319.89	NA	38.4	NA	715.7148034	NA	613.3946729	SSC	0.428571429	0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.287	366	0	0	NA	17qA3.2	chr17-18105061-20584717	6	3	3	0.96	4.11164545	NA	2	1	sgMsh2	cell line
chr16	3592523	3592523	GA	G	ENSMUST00000216259.1	5	ENSMUSG00000051003	FS	G/X	42	Olfr161	ENSMUST00000216259.1:c.128del	ENSMUSP00000150825.1:p.Asn43ThrfsTer46	H-2-Kb	8	47	0	LSLRYWPF	NA	NetMHCpan	130.4	NA	NA	187	0.241	210.41	NA	NA	NA	465.62	NA	130.4	NA	248.7367755	NA	172.0838049	SSC	-0.357142857	-0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.25	187	0	0	NA	16qA1	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	sgMsh2	cell line
chr16	58915901	58915901	GA	G	ENSMUST00000171656.2	2	ENSMUSG00000090629	FS	S/X	247	Olfr180	ENSMUST00000171656.2:c.739del	ENSMUSP00000128358.1:p.Ser247LeufsTer31	H-2-Kb	8	31	0	KTYQWLYF	NA	NetMHCpan	200.7	NA	NA	229	0.284	382.912	NA	NA	NA	489.31	NA	200.7	NA	445.3895263	NA	320.4350395	SSC	-0.157142857	-0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.286	229	0	0	NA	16qC1.2	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr16	70495336	70495336	C	T	ENSMUST00000163832.7	5	ENSMUSG00000022707	missense	L/F	519	Gbe1	ENSMUST00000163832.7:c.1555C>T	ENSMUSP00000132603.1:p.Leu519Phe	H-2-Kb	8	7	5	RGIQFHKM	RGIQLHKM	NetMHCpan	174.5	2883	16.521	147	0.061	389.737	4131.954	10.602	11809.48	528.91	2883	174.5	4312.608157	409.0157201	3951.299959	370.458872	SSC	-0.257142857	-0.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.071	147	0	0	NA	16qC2	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	0.304090445	sgMsh2	cell line
chr16	58915901	58915901	GA	G	ENSMUST00000171656.2	2	ENSMUSG00000090629	FS	S/X	247	Olfr180	ENSMUST00000171656.2:c.739del	ENSMUSP00000128358.1:p.Ser247LeufsTer31	H-2-Kb	8	29	0	VIKTYQWL	NA	SMM	154.433	NA	NA	229	0.284	282.366	NA	NA	NA	556.53	NA	386.6	NA	154.4329616	NA	178.1312026	SSC	-0.285714286	-0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.286	229	0	0	NA	16qC1.2	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr16	74352713	74352713	TC	T	ENSMUST00000117785.8	1	ENSMUSG00000052516	FS	D/X	76	Robo2	ENSMUST00000117785.8:c.226del	ENSMUSP00000112776.1:p.Asp76MetfsTer45	H-2-Kb	8	23	0	DLYSFCEL	NA	NetMHCpan	220.3	NA	NA	92	0.25	250.233	NA	NA	NA	561.41	NA	220.3	NA	244.7597495	NA	255.7054591	SSC	1.042857143	1.042857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.261	92	0	0	NA	16qC3.1	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr16	32961669	32961669	A	G	ENSMUST00000135193.8	5	ENSMUSG00000022801	missense	Y/C	271	Lrch3	ENSMUST00000135193.8:c.812A>G	ENSMUSP00000130708.1:p.Tyr271Cys	H-2-Kb	8	5	7	KIHIFKCL	KIHIFKYL	SMMPMBEC	256.886	92.628	0.361	213	0.235	319.381	76.184	0.239	59.74	598.73	59.4	324.9	102.9769442	313.8629122	92.62751223	256.8857419	SSC	1.571428571	1.571428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.249	213	0	0	NA	16qB3	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr16	59345618	59345618	G	T	ENSMUST00000207927.2	5	ENSMUSG00000066257	missense	L/M	28	Olfr206	ENSMUST00000207927.2:c.82C>A	ENSMUSP00000146906.2:p.Leu28Met	H-2-Kb	8	11	1	MVFFLIYV	LVFFLIYV	SMM	180.609	428.292	2.371	255	0.247	411.394	709.776	1.725	991.26	625.21	1711.4	925.4	428.2920371	180.6092545	387.9180607	197.5786438	SSC	3	3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.24	255	0	0	NA	16qC1.3	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr16	7224486	7224486	C	T	ENSMUST00000229741.1	NA	ENSMUSG00000008658	missense	P/L	88	Rbfox1	ENSMUST00000229741.1:c.263C>T	ENSMUSP00000155364.1:p.Pro88Leu	H-2-Kb	8	4	8	HTLNLYPL	HTLNLYPP	SMMPMBEC	366.218	9500.359	25.942	61	0.246	433.519	12596.679	29.057	23581.95	865.57	15693	486.2	9220.192747	380.8377582	9500.358634	366.2182643	SSC	0.614285714	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.237	61	0	0	NA	16qA1	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr15	100209633	100209633	G	A	ENSMUST00000100203.9	1	ENSMUSG00000023026	missense	E/K	1409	Dip2b	ENSMUST00000100203.9:c.4225G>A	ENSMUSP00000097777.3:p.Glu1409Lys	H-2-Kb	8	6	6	TIYDSKTL	TIYDSETL	SMM	364.536	448.477	1.23	92	0.152	441.989	542.053	1.226	1188.74	1110.38	488.8	444.7	448.476819	364.5356443	595.3056439	439.2785529	SSC	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.156	92	0	0	NA	15qF1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.668142386	sgMsh2	cell line
chr17	18304169	18304169	GA	G	ENSMUST00000079206.7	5	ENSMUSG00000079698	FS	K/X	142	Vmn2r93	ENSMUST00000079206.7:c.432del	ENSMUSP00000078200.6:p.Lys144AsnfsTer38	H-2-Kb	9	34	0	ISLNFHRLL	NA	NetMHC	4.13	NA	NA	366	0.287	43.694	NA	NA	NA	4.13	NA	7.2	NA	80.18811416	NA	80.95617863	SSC	0.428571429	0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.287	366	0	0	NA	17qA3.2	chr17-18105061-20584717	6	3	3	0.96	4.11164545	NA	2	1	sgMsh2	cell line
chr17	14670751	14670751	A	G	ENSMUST00000170872.2	1	ENSMUSG00000023885	missense	V/A	1039	Thbs2	ENSMUST00000170872.2:c.3116T>C	ENSMUSP00000128308.1:p.Val1039Ala	H-2-Kb	9	5	7	SSSRFYAVM	SSSRFYVVM	NetMHC	10.18	60.31	5.924	86	0.256	68.885	112.801	1.638	60.31	10.18	30.7	15.8	184.9737069	128.2655418	165.2913018	121.9691508	SSC	0.585714286	0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.275	86	0	0	NA	17qA2	chr17-3079405-18085536	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr16	19566134	19566134	T	C	ENSMUST00000215476.1	5	ENSMUSG00000068535	missense	M/V	250	Olfr169	ENSMUST00000215476.1:c.748A>G	ENSMUSP00000150917.1:p.Met250Val	H-2-Kb	9	8	4	VVIVYYGPF	VVIMYYGPF	NetMHC	15.9	15.15	0.953	427	0.248	20.74	22.059	1.064	15.15	15.9	24	30.7	23.8292295	20.23531643	20.28850284	21.24467052	SSC	0.985714286	2.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.256	427	0	0	NA	16qA3	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr16	3592590	3592590	A	G	ENSMUST00000216259.1	5	ENSMUSG00000051003	missense	S/G	65	Olfr161	ENSMUST00000216259.1:c.193A>G	ENSMUSP00000150825.1:p.Ser65Gly	H-2-Kb	9	5	7	PMYFFLGNL	PMYFFLSNL	SMM	22.862	15.35	0.671	220	0.259	43.133	26.875	0.623	34.5	54.11	28.5	71.6	15.35005727	22.86177783	25.24933823	32.15511003	SSC	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.258	220	0	0	NA	16qA1	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	sgMsh2	cell line
chr16	70495336	70495336	C	T	ENSMUST00000163832.7	5	ENSMUSG00000022707	missense	L/F	519	Gbe1	ENSMUST00000163832.7:c.1555C>T	ENSMUSP00000132603.1:p.Leu519Phe	H-2-Kb	9	9	3	IQFHKMIRL	IQLHKMIRL	NetMHCpan	41.2	259	6.286	147	0.061	94.524	295.161	3.123	182.04	69.58	259	41.2	449.8937915	160.3651519	331.3217908	119.4675617	SSC	0.2	0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.071	147	0	0	NA	16qC2	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	0.304090445	sgMsh2	cell line
chr17	20502847	20502847	A	AT	ENSMUST00000233982.1	NA	ENSMUSG00000043537	FS	-/X	183-184	Vmn1r225	ENSMUST00000233982.1:c.553dup	ENSMUSP00000156633.1:p.Trp185LeufsTer5	H-2-Kb	9	7	7	TVYIAFLGI	TVYIAFWVF	NetMHCpan	60.4	1563.2	25.881	218	0.243	124.387	895.217	7.197	1484.16	70.08	1563.2	60.4	306.2739079	178.6940122	268.0711022	196.4490803	SSC	2.242857143	2.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.235	218	0	0	NA	17qA3.2	chr17-18105061-20584717	6	3	3	0.96	4.11164545	NA	2	1	sgMsh2	cell line
chr17	20574197	20574197	CA	C	ENSMUST00000169559.2	5	ENSMUSG00000091259	FS	C/X	737	Vmn2r110	ENSMUST00000169559.2:c.2209del	ENSMUSP00000129347.1:p.Cys737AlafsTer78	H-2-Kb	9	78	0	SWWLWKSSL	NA	NetMHC	79.63	NA	NA	545	0.226	124.826	NA	NA	NA	79.63	NA	152.8	NA	96.8523137	NA	158.2158541	SSC	0.042857143	0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2257	545	0	0	NA	17qA3.2	chr17-18105061-20584717	6	3	3	0.96	4.11164545	NA	2	0.966664977	sgMsh2	cell line
chr17	20030036	20030036	A	G	ENSMUST00000168050.2	5	ENSMUSG00000090315	missense	F/L	658	Vmn2r104	ENSMUST00000168050.2:c.1972T>C	ENSMUSP00000129895.1:p.Phe658Leu	H-2-Kb	9	11	1	LAVAFTMAL	FAVAFTMAL	NetMHC	89.34	100.18	1.121	869	0.229	263.25	298.368	1.133	100.18	89.34	166.1	107.6	430.63567	418.8996524	526.3201534	458.4056903	SSC	2.228571429	2.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe	3	0.235	869	0	0	NA	17qA3.2	chr17-18105061-20584717	6	3	3	0.96	4.11164545	NA	2	1	sgMsh2	cell line
chr16	13835196	13835196	T	G	ENSMUST00000023362.14	1	ENSMUSG00000022681	missense	L/W	272	Ntan1	ENSMUST00000023362.14:c.815T>G	ENSMUSP00000023362.8:p.Leu272Trp	H-2-Kb	9	9	3	STWMFLKKF	STLMFLKKF	NetMHC	150.06	189.84	1.265	76	0.197	255.117	324.22	1.271	189.84	150.06	238	216.3	451.9704069	352.4601324	410.4403034	293.9341186	SSC	0.371428571	0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	76	0	0	NA	16qA1	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	0.967949866	sgMsh2	cell line
chr16	45748812	45748812	T	C	ENSMUST00000076333.11	1	ENSMUSG00000033149	missense	D/G	1228	Phldb2	ENSMUST00000076333.11:c.3683A>G	ENSMUSP00000075672.5:p.Asp1228Gly	H-2-Kb	9	4	8	RTFSYYAGK	RTFSYYADK	NetMHC	153.64	747.33	4.864	80	0.225	441.83	813.288	1.841	747.33	153.64	1982	668.2	879.2451877	433.6206938	690.6372522	450.0388435	SSC	-0.442857143	0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.223	80	0	0	NA	16qB5	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	0.955100974	sgMsh2	cell line
chr16	74352713	74352713	TC	T	ENSMUST00000117785.8	1	ENSMUSG00000052516	FS	D/X	76	Robo2	ENSMUST00000117785.8:c.226del	ENSMUSP00000112776.1:p.Asp76MetfsTer45	H-2-Kb	9	42	0	VTFVLQGTI	NA	NetMHCpan	117.4	NA	NA	92	0.25	283.035	NA	NA	NA	194.32	NA	117.4	NA	375.9326101	NA	371.7491635	SSC	1.528571429	1.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.261	92	0	0	NA	16qC3.1	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr17	19053653	19053653	C	A	ENSMUST00000170424.2	5	ENSMUSG00000096717	missense	S/Y	54	Vmn2r98	ENSMUST00000170424.2:c.161C>A	ENSMUSP00000131261.1:p.Ser54Tyr	H-2-Kb	9	7	5	HTFYYLKKM	HTFYSLKKM	NetMHCpan	162.4	2676.5	16.481	212	0.222	315.655	1812.209	5.741	2171.47	303.78	2676.5	162.4	1432.550696	345.2311699	1452.947761	327.5291816	SSC	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	212	0	0	NA	17qA3.2	chr17-18105061-20584717	6	3	3	0.96	4.11164545	NA	2	0.97223283	sgMsh2	cell line
chr16	58915901	58915901	GA	G	ENSMUST00000171656.2	2	ENSMUSG00000090629	FS	S/X	247	Olfr180	ENSMUST00000171656.2:c.739del	ENSMUSP00000128358.1:p.Ser247LeufsTer31	H-2-Kb	9	31	0	KTYQWLYFI	NA	NetMHCpan	171.2	NA	NA	229	0.284	384.332	NA	NA	NA	307.23	NA	171.2	NA	461.4344339	NA	521.4948213	SSC	0.585714286	0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.286	229	0	0	NA	16qC1.2	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr16	3592523	3592523	GA	G	ENSMUST00000216259.1	5	ENSMUSG00000051003	FS	G/X	42	Olfr161	ENSMUST00000216259.1:c.128del	ENSMUSP00000150825.1:p.Asn43ThrfsTer46	H-2-Kb	9	39	0	WMYASPPPL	NA	NetMHCpan	187.9	NA	NA	187	0.241	209.738	NA	NA	NA	330.1	NA	187.9	NA	192.357888	NA	227.1171867	SSC	-0.185714286	-0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.25	187	0	0	NA	16qA1	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	sgMsh2	cell line
chr16	59345618	59345618	G	T	ENSMUST00000207927.2	5	ENSMUSG00000066257	missense	L/M	28	Olfr206	ENSMUST00000207927.2:c.82C>A	ENSMUSP00000146906.2:p.Leu28Met	H-2-Kb	9	10	2	LMVFFLIYV	LLVFFLIYV	SMM	172.628	1318.591	7.638	255	0.247	363.916	1952.655	5.366	2586.72	523.54	9504.5	3566.5	1318.590675	172.6275075	1222.503187	204.2913602	SSC	3	3.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.24	255	0	0	NA	16qC1.3	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr17	56632320	56632320	T	G	ENSMUST00000112979.3	1	ENSMUSG00000040828	missense	F/V	50	Catsperd	ENSMUST00000112979.3:c.148T>G	ENSMUSP00000108603.2:p.Phe50Val	H-2-Db	9	5	7	YAFPNTVVL	YAFPNTFVL	NetMHCpan	9.1	7.6	0.835	136	0.221	33.615	30.922	0.92	12.57	10.27	7.6	9.1	49.27424743	62.03260224	49.83907806	56.96000254	SSC	1.314285714	1.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.224	136	0	0	NA	17qD	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	0.959383938	sgMsh2	cell line
chr17	38148878	38148878	T	C	ENSMUST00000215078.2	5	ENSMUSG00000063240	missense	C/R	97	Olfr133	ENSMUST00000215078.2:c.289T>C	ENSMUSP00000149451.2:p.Cys97Arg	H-2-Kb	8	6	6	ISYMRRAV	ISYMRCAV	NetMHC	16.45	13.51	0.821	341	0.267	49.956	47.314	0.947	13.51	16.45	20.2	32.5	86.64430052	79.2027024	74.42862571	67.41243274	SSC	-0.457142857	-0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.268	341	0	0	NA	17qB1	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr17	37590059	37590059	A	G	ENSMUST00000216249.1	5	ENSMUSG00000062629	missense	M/T	98	Olfr114	ENSMUST00000216249.1:c.293T>C	ENSMUSP00000149735.1:p.Met98Thr	H-2-Kb	8	5	7	ISYGQCTL	ISYGQCML	SMM	46.21	40.714	0.881	570	0.239	49.885	43.907	0.88	36.99	48.97	47.1	50.8	40.71364636	46.21042896	60.63732022	68.0361923	SSC	-0.057142857	0.042857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.243	570	0	0	NA	17qB1	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr17	80433721	80433721	T	A	ENSMUST00000068714.6	2	ENSMUSG00000024241	missense	Q/L	545	Sos1	ENSMUST00000068714.6:c.1634A>T	ENSMUSP00000067786.5:p.Gln545Leu	H-2-Kb	8	8	4	ISLLYRST	ISLQYRST	NetMHC	76.46	115.51	1.511	64	0.281	118.863	128.993	1.085	115.51	76.46	315.3	141.4	142.4754378	146.8047136	96.10367602	96.32521787	SSC	-0.071428571	0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.281	64	0	0	NA	17qE3	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr17	28691801	28691801	C	A	ENSMUST00000004990.13	1	ENSMUSG00000053436	missense	P/H	21	Mapk14	ENSMUST00000004990.13:c.62C>A	ENSMUSP00000004990.6:p.Pro21His	H-2-Kb	8	10	2	VHERYQNL	VPERYQNL	SMMPMBEC	69.142	86.445	1.25	28	0.143	92.674	285.683	3.083	483.92	114.92	1111.1	352.6	87.44601036	70.42713151	86.44502416	69.1416915	SSC	-2.242857143	-2.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.179	28	0	0	NA	17qA3.3	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	0.766650558	sgMsh2	cell line
chr17	22146436	22146436	A	G	ENSMUST00000080249.5	1	ENSMUSG00000063383	missense	C/R	86	Zfp947	ENSMUST00000080249.5:c.256T>C	ENSMUSP00000079137.5:p.Cys86Arg	H-2-Kb	8	7	5	KSYERHEL	KSYECHEL	NetMHCpan	80.7	110	1.363	191	0.293	257.706	143.357	0.556	190.09	201.55	110	80.7	139.2323008	313.8629122	147.4823333	342.5626424	SSC	-1.857142857	-1.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.293	191	0	0	NA	17qA3.3	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr17	40228805	40228805	A	G	ENSMUST00000026499.5	1	ENSMUSG00000025433	missense	V/A	167	Crisp3	ENSMUST00000026499.5:c.500T>C	ENSMUSP00000026499.5:p.Val167Ala	H-2-Kb	8	10	2	YACRYCPV	YVCRYCPV	SMMPMBEC	174.478	161.339	0.925	267	0.236	239.579	312.449	1.304	429.13	286.52	494.4	303	195.7672319	192.6371303	161.3392375	174.4777291	SSC	0.514285714	0.514285714	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.231	267	0	0	NA	17qB2	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	0.989364686	sgMsh2	cell line
chr17	84692924	84692924	A	T	ENSMUST00000045714.14	1	ENSMUSG00000024254	missense	Y/F	304	Abcg8	ENSMUST00000045714.14:c.911A>T	ENSMUSP00000035246.8:p.Tyr304Phe	H-2-Kb	8	8	4	MVQFFTSI	MVQYFTSI	NetMHCpan	56	76.4	1.364	102	0.304	405.83	426.687	1.051	326.46	509.78	76.4	56	545.4312289	396.9538331	526.9143181	414.7056956	SSC	1.328571429	1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.313	102	0	0	NA	17qE4	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr17	58294347	58294347	GA	G	ENSMUST00000076038.6	2	ENSMUSG00000038048	FS	E/X	830	Cntnap5c	ENSMUST00000076038.6:c.2491del	ENSMUSP00000075416.5:p.Ile831SerfsTer12	H-2-Kb	8	8	5	VFLESLAL	VFLEILGI	SMM	241.402	3449.372	14.289	228	0.246	469.793	3333.027	7.095	3279.64	517.17	1794.2	607.2	3449.371732	241.4015198	3386.413603	422.4156501	SSC	1.671428571	1.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.254	228	0	0	NA	17qD	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr18	13015915	13015915	T	G	ENSMUST00000041676.2	1	ENSMUSG00000037346	missense	D/E	111	Hrh4	ENSMUST00000041676.2:c.333T>G	ENSMUSP00000041061.2:p.Asp111Glu	H-2-Kb	8	8	4	ISYERYQS	ISYDRYQS	NetMHCpan	245.3	408.1	1.664	265	0.245	406.318	624.792	1.538	1091.95	533.49	408.1	245.3	540.4306853	347.3281635	709.1530907	465.3074435	SSC	-2.242857143	-1.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.24	265	0	0	NA	18qA1	chr18-5046666-88869177	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr17	37751964	37751964	A	G	ENSMUST00000174675.3	5	ENSMUSG00000060017	missense	I/V	37	Olfr121	ENSMUST00000174675.3:c.109A>G	ENSMUSP00000133865.3:p.Ile37Val	H-2-Kb	8	4	8	CFLLFTLV	CFLLFTLI	SMM	253.945	461.041	1.816	485	0.252	479.578	724.227	1.51	850.4	581.81	2002	2533.9	461.0414792	253.9451951	598.0534499	377.3462166	SSC	2.928571429	2.928571429	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.253	485	0	0	NA	17qB1	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr17	38274953	38274953	CT	C	ENSMUST00000173841.2	2	ENSMUSG00000057443	FS	F/X	61	Olfr138	ENSMUST00000173841.2:c.185del	ENSMUSP00000133828.2:p.Phe62SerfsTer45	H-2-Kb	8	47	0	VLFNFMSS	NA	SMM	87.85	NA	NA	270	0.037	212.931	NA	NA	NA	598.76	NA	298	NA	87.8496428	NA	127.8615603	SSC	0.885714286	1.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.04	270	0	0	NA	17qB1	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	0.17131856	sgMsh2	cell line
chr17	30761096	30761096	GT	G	ENSMUST00000236140.1	NA	ENSMUSG00000033826	FS	F/X	3035	Dnah8	ENSMUST00000236140.1:c.9108del	ENSMUSP00000157469.1:p.Phe3036LeufsTer5	H-2-Kb	8	5	8	TSLDLVFL	TSLDLVFF	SMM	245.89	3997.054	16.255	132	0.152	452.067	3837.777	8.489	5159.69	706.65	3678.5	633.9	3997.053856	245.8895091	3394.220093	270.2340064	SSC	2.014285714	2.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.162	132	0	0	NA	17qA3.3	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	0.69384017	sgMsh2	cell line
chr17	25878357	25878357	A	G	ENSMUST00000176696.2	3	ENSMUSG00000071192	missense	M/T	331	Wfikkn1	ENSMUST00000176696.2:c.992T>C	ENSMUSP00000135083.2:p.Met331Thr	H-2-Kb	8	9	3	SCTTFPAL	SCMTFPAL	SMMPMBEC	325.642	108.578	0.333	22	0.455	490.693	94.264	0.192	79.95	737.48	59.8	644.3	157.3040847	337.0854446	108.5775406	325.64169	SSC	1.128571429	1.128571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.438	22	0	0	NA	17qA3.3	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	2	1	sgMsh2	cell line
chr18	13015915	13015915	T	G	ENSMUST00000041676.2	1	ENSMUSG00000037346	missense	D/E	111	Hrh4	ENSMUST00000041676.2:c.333T>G	ENSMUSP00000041061.2:p.Asp111Glu	H-2-Kb	9	8	4	ISYERYQSV	ISYDRYQSV	NetMHC	4.58	6.82	1.489	265	0.245	10.587	11.524	1.089	6.82	4.58	7.3	6.1	17.91059444	16.25960534	15.74889183	15.07474589	SSC	-1.528571429	-1.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.24	265	0	0	NA	18qA1	chr18-5046666-88869177	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr17	49070103	49070103	G	T	ENSMUST00000046254.2	1	ENSMUSG00000040490	missense	D/Y	71	Lrfn2	ENSMUST00000046254.2:c.211G>T	ENSMUSP00000047573.2:p.Asp71Tyr	H-2-Kb	9	7	5	IGRQYFANM	IGRQDFANM	NetMHC	4.81	270.13	56.16	77	0.26	60.783	529.722	8.715	270.13	4.81	195.6	9.3	1104.358301	135.5532704	789.3143527	112.2664526	SSC	-0.9	-0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.27	77	0	0	NA	17qC	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr17	80433721	80433721	T	A	ENSMUST00000068714.6	2	ENSMUSG00000024241	missense	Q/L	545	Sos1	ENSMUST00000068714.6:c.1634A>T	ENSMUSP00000067786.5:p.Gln545Leu	H-2-Kb	9	8	4	ISLLYRSTL	ISLQYRSTL	NetMHC	9.44	10.14	1.074	64	0.281	45.936	64.304	1.4	10.14	9.44	16.6	11.5	126.2147176	80.37296686	112.0082469	81.70525693	SSC	0.585714286	0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.281	64	0	0	NA	17qE3	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr17	84692924	84692924	A	T	ENSMUST00000045714.14	1	ENSMUSG00000024254	missense	Y/F	304	Abcg8	ENSMUST00000045714.14:c.911A>T	ENSMUSP00000035246.8:p.Tyr304Phe	H-2-Kb	9	7	5	QMVQFFTSI	QMVQYFTSI	NetMHCpan	38.2	56.7	1.484	102	0.304	110.804	144.177	1.301	109.66	76.36	56.7	38.2	178.6940122	145.2479461	201.0249672	188.9078477	SSC	1.328571429	1.328571429	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.313	102	0	0	NA	17qE4	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr17	80216772	80216772	T	C	ENSMUST00000134652.1	3	ENSMUSG00000046196	missense	Y/H	287	Ttc39d	ENSMUST00000134652.1:c.859T>C	ENSMUSP00000123158.1:p.Tyr287His	H-2-Kb	9	8	4	LFYHNYVRV	LFYYNYVRV	NetMHC	102.39	66.55	0.65	214	0.276	111.758	88.353	0.791	66.55	102.39	231.3	294.6	89.55915762	119.7043685	87.14651012	103.8125837	SSC	-0.771428571	0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.27	214	0	0	NA	17qE3	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr17	37751964	37751964	A	G	ENSMUST00000174675.3	5	ENSMUSG00000060017	missense	I/V	37	Olfr121	ENSMUST00000174675.3:c.109A>G	ENSMUSP00000133865.3:p.Ile37Val	H-2-Kb	9	11	1	VLLMFLVSL	ILLMFLVSL	NetMHC	127.87	166.59	1.303	485	0.252	185.568	235.147	1.267	166.59	127.87	243.7	206.3	294.5167504	200.0368468	226.5948317	171.0999962	SSC	2.785714286	3.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.253	485	0	0	NA	17qB1	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr17	40783774	40783774	A	G	ENSMUST00000232709.1	NA	ENSMUSG00000023930	missense	Y/H	137	Crisp2	ENSMUST00000232709.1:c.409T>C	ENSMUSP00000156411.1:p.Tyr137His	H-2-Kb	9	6	6	SAVGHHTQL	SAVGHYTQL	NetMHC	129.64	22.75	0.175	157	0.229	201.5	45.866	0.228	22.75	129.64	39.1	238.6	67.15989369	235.0228021	52.63201534	167.9770694	SSC	-0.428571429	-0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.228	157	0	0	NA	17qB2	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	0.976515794	sgMsh2	cell line
chr17	38274953	38274953	CT	C	ENSMUST00000173841.2	2	ENSMUSG00000057443	FS	F/X	61	Olfr138	ENSMUST00000173841.2:c.185del	ENSMUSP00000133828.2:p.Phe62SerfsTer45	H-2-Kb	9	47	0	VLFNFMSST	NA	NetMHCpan	154.1	NA	NA	270	0.037	259.213	NA	NA	NA	165.04	NA	154.1	NA	463.5643185	NA	353.3865369	SSC	0.242857143	1.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.04	270	0	0	NA	17qB1	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	0.17131856	sgMsh2	cell line
chr17	58294347	58294347	GA	G	ENSMUST00000076038.6	2	ENSMUSG00000038048	FS	E/X	830	Cntnap5c	ENSMUST00000076038.6:c.2491del	ENSMUSP00000075416.5:p.Ile831SerfsTer12	H-2-Kb	9	5	8	LSGVFLESL	LSGVFLEIL	NetMHC	242.37	879.82	3.63	228	0.246	330.164	650.394	1.97	879.82	242.37	1759.5	600.1	372.4860392	325.1696473	420.9688878	335.1583163	SSC	1.414285714	1.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.254	228	0	0	NA	17qD	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr17	78943279	78943279	GT	G	ENSMUST00000024887.5	1	ENSMUSG00000024082	FS	F/X	212	Ndufaf7	ENSMUST00000024887.5:c.639del	ENSMUSP00000024887.4:p.Phe213LeufsTer31	H-2-Kb	9	12	1	LMFFLCINF	NA	SMMPMBEC	178.752	NA	NA	309	0.029	217.478	NA	NA	NA	247.84	NA	1328.3	NA	187.1156015	NA	178.7516256	SSC	2.242857143	3.157142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.029	309	0	0	NA	17qE3	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	0.124205956	sgMsh2	cell line
chr17	56632320	56632320	T	G	ENSMUST00000112979.3	1	ENSMUSG00000040828	missense	F/V	50	Catsperd	ENSMUST00000112979.3:c.148T>G	ENSMUSP00000108603.2:p.Phe50Val	H-2-Kb	9	3	9	LFYAFPNTV	LFYAFPNTF	NetMHCpan	233	338.6	1.453	136	0.221	281.738	333.442	1.184	338.69	258.61	338.6	233	228.6177783	304.8667072	328.2842143	424.864065	SSC	0.242857143	0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.224	136	0	0	NA	17qD	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	0.959383938	sgMsh2	cell line
chr17	22602492	22602492	A	G	ENSMUST00000097381.4	1	ENSMUSG00000094921	missense	T/A	149	Vmn2r112	ENSMUST00000097381.4:c.445A>G	ENSMUSP00000094994.3:p.Thr149Ala	H-2-Kb	9	10	2	TAVTLYTIL	TTVTLYTIL	NetMHCpan	171.1	159.6	0.933	288	0.205	247.205	307.665	1.245	316.62	263.07	159.6	171.1	382.0410236	277.4022632	298.7101638	231.3396105	SSC	1.942857143	1.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.203	288	0	0	NA	17qA3.3	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	0.869441694	sgMsh2	cell line
chr17	38148878	38148878	T	C	ENSMUST00000215078.2	5	ENSMUSG00000063240	missense	C/R	97	Olfr133	ENSMUST00000215078.2:c.289T>C	ENSMUSP00000149451.2:p.Cys97Arg	H-2-Kb	9	7	5	SYMRRAVQL	SYMRCAVQL	NetMHC	319.63	753.04	2.356	341	0.267	361.144	905.233	2.507	753.04	319.63	627.1	347.1	1340.01605	482.0698829	1057.426037	375.1889162	SSC	-0.114285714	-0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.268	341	0	0	NA	17qB1	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr17	28691801	28691801	C	A	ENSMUST00000004990.13	1	ENSMUSG00000053436	missense	P/H	21	Mapk14	ENSMUST00000004990.13:c.62C>A	ENSMUSP00000004990.6:p.Pro21His	H-2-Kb	9	9	3	EVHERYQNL	EVPERYQNL	SMMPMBEC	314.232	458.406	1.459	28	0.143	372.707	460.452	1.235	397.99	404.92	1133.7	860.4	462.4981501	340.4944207	458.4056903	314.2317036	SSC	-2.242857143	-2.185714286	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.179	28	0	0	NA	17qA3.3	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	0.766650558	sgMsh2	cell line
chr17	32377792	32377792	G	T	ENSMUST00000236409.1	NA	ENSMUSG00000024050	missense	L/I	323	Wiz	ENSMUST00000236409.1:c.967C>A	ENSMUSP00000158082.1:p.Leu323Ile	H-2-Kb	9	3	9	IYFKHKEHI	IYFKHKEHL	SMMPMBEC	335.158	144.961	0.433	91	0.187	468.818	161.055	0.344	213.66	577.21	153.8	519.7	168.310031	417.9362099	144.9606074	335.1583163	SSC	-1.485714286	-1.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	91	0	0	NA	17qB1	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	0.856592802	sgMsh2	cell line
chr17	38148878	38148878	T	C	ENSMUST00000215078.2	5	ENSMUSG00000063240	missense	C/R	97	Olfr133	ENSMUST00000215078.2:c.289T>C	ENSMUSP00000149451.2:p.Cys97Arg	H-2-Kb	9	6	6	ISYMRRAVQ	ISYMRCAVQ	SMMPMBEC	104.292	84.967	0.815	341	0.267	431.473	302.462	0.701	455.95	695.41	737	1490.1	148.9738357	167.5367167	84.96694433	104.2917608	SSC	-0.842857143	-0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.268	341	0	0	NA	17qB1	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr18	61299670	61299670	T	C	ENSMUST00000075299.12	1	ENSMUSG00000033871	missense	T/A	954	Ppargc1b	ENSMUST00000075299.12:c.2860A>G	ENSMUSP00000074771.6:p.Thr954Ala	H-2-Db	9	4	8	LSVRNGAAL	LSVRNGATL	NetMHC	30.06	13.56	0.451	75	0.227	93.003	52.144	0.561	13.56	30.06	30.9	63.1	73.38714626	124.0566359	76.30798752	122.905127	SSC	0.457142857	0.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.236	75	0	0	NA	18qE1	chr18-5046666-88869177	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr18	37680939	37680939	G	T	ENSMUST00000192931.1	1	ENSMUSG00000103037	missense	S/I	161	Pcdhgb1	ENSMUST00000192931.1:c.482G>T	ENSMUSP00000141348.1:p.Ser161Ile	H-2-Db	9	3	9	NSLKMYTVI	NSLKMYTVS	NetMHC	158.89	19903.22	125.264	180	0.522	356.594	9153.28	25.669	19903.22	158.89	14990.9	524.3	2996.539453	391.3992598	3315.660076	321.7881152	SSC	1.214285714	1.214285714	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.521	180	0	0	NA	18qB3	chr18-5046666-88869177	4	2	2	0.96	4.11164545	NA	2	1	sgMsh2	cell line
chr18	37485357	37485357	A	G	ENSMUST00000053856.5	NA	ENSMUSG00000046387	missense	I/V	67	Pcdhb17	ENSMUST00000053856.5:c.199A>G	ENSMUSP00000055072.4:p.Ile67Val	H-2-Db	9	11	1	VSQENKEHL	ISQENKEHL	SMMPMBEC	398.63	514.719	1.291	119	0.202	431.345	566.809	1.314	1558.56	1221.5	373.7	408.1	618.8993121	454.5901278	514.7187632	398.6300187	SSC	-2.471428571	-2.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.209	119	0	0	NA	18qB3	chr18-5046666-88869177	4	2	2	0.96	4.11164545	NA	1	0.895139478	sgMsh2	cell line
chr18	37421758	37421758	A	G	ENSMUST00000053073.5	NA	ENSMUSG00000051486	missense	N/S	47	Pcdhb11	ENSMUST00000053073.5:c.140A>G	ENSMUSP00000056148.4:p.Asn47Ser	H-2-Kb	8	5	7	SGYLVASV	SGYLVANV	NetMHC	21.45	8.74	0.407	371	0.232	72.422	32.915	0.454	8.74	21.45	35.3	69.9	30.53092764	74.94454029	37.56124682	85.8499408	SSC	1.642857143	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.234	371	0	0	NA	18qB3	chr18-5046666-88869177	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr18	37357271	37357271	G	T	ENSMUST00000051163.2	NA	ENSMUSG00000045876	missense	Q/H	667	Pcdhb8	ENSMUST00000051163.2:c.2001G>T	ENSMUSP00000054371.1:p.Gln667His	H-2-Kb	8	9	3	FSHPYLPL	FSQPYLPL	NetMHCpan	21	50.5	2.405	380	0.221	35.781	51.174	1.43	40.55	26.3	50.5	21	51.84895408	45.26265239	74.60020141	50.90260401	SSC	-0.128571429	-0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.221	380	0	0	NA	18qB3	chr18-5046666-88869177	4	2	2	0.96	4.11164545	NA	1	0.946535046	sgMsh2	cell line
chr19	13705156	13705156	A	G	ENSMUST00000216366.1	5	ENSMUSG00000051156	missense	T/A	110	Olfr1491	ENSMUST00000216366.1:c.328A>G	ENSMUSP00000149071.1:p.Thr110Ala	H-2-Kb	8	5	7	QMFFFLAL	QMFFFLTL	NetMHCpan	14.6	11.8	0.808	315	0.159	24.739	38.93	1.574	42.4	28.16	11.8	14.6	35.46010359	21.31768301	51.13755976	32.48927349	SSC	2.814285714	2.814285714	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.169	315	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.723820918	sgMsh2	cell line
chr19	4290661	4290661	T	C	ENSMUST00000088737.10	1	ENSMUSG00000024858	missense	M/V	257	Grk2	ENSMUST00000088737.10:c.769A>G	ENSMUSP00000086114.4:p.Met257Val	H-2-Kb	8	11	1	VSYAFHTP	MSYAFHTP	SMM	26.348	56.2	2.133	225	0.124	43.101	101.595	2.357	223.64	50.66	127.9	54.8	56.20047679	26.3475356	75.29046857	35.54184757	SSC	-0.428571429	0.4	FALSE	FALSE	TRUE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.127	225	0	0	NA	19qA	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	sgMsh2	cell line
chr19	5026399	5026399	T	C	ENSMUST00000236152.1	NA	ENSMUSG00000024891	missense	I/T	105	Slc29a2	ENSMUST00000236152.1:c.314T>C	ENSMUSP00000157780.1:p.Ile105Thr	H-2-Kb	8	10	2	ATLLLFAL	AILLLFAL	NetMHC	111.55	117.4	1.052	134	0.127	156.223	164.211	1.051	117.4	111.55	417.7	157.3	155.1457917	155.1457917	173.2766328	166.241711	SSC	2.728571429	2.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.137	134	0	0	NA	19qA	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	sgMsh2	cell line
chr19	13861984	13861984	A	G	ENSMUST00000074221.1	NA	ENSMUSG00000056858	missense	S/G	64	Olfr1502	ENSMUST00000074221.1:c.190A>G	ENSMUSP00000073843.1:p.Ser64Gly	H-2-Kb	8	6	6	MYFFLGHL	MYFFLSHL	NetMHCpan	44.5	18.4	0.413	416	0.209	150.3	102.23	0.68	79.22	142.57	18.4	44.5	125.2391179	163.2074578	128.7478543	158.0301673	SSC	1.185714286	1.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.21	416	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.899422442	sgMsh2	cell line
chr18	61081937	61081937	T	C	ENSMUST00000025522.10	1	ENSMUSG00000024620	missense	Y/H	1009	Pdgfrb	ENSMUST00000025522.10:c.3025T>C	ENSMUSP00000025522.4:p.Tyr1009His	H-2-Kb	8	7	5	SSVLHTAV	SSVLYTAV	NetMHC	157.61	12.1	0.077	100	0.23	248.021	44.005	0.177	12.1	157.61	29.7	355.2	58.30959165	225.8083514	62.47985313	270.2340064	SSC	1.328571429	1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.245	100	0	0	NA	18qE1	chr18-5046666-88869177	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr19	31920923	31920923	A	G	ENSMUST00000075838.7	1	ENSMUSG00000052595	missense	R/G	236	A1cf	ENSMUST00000075838.7:c.706A>G	ENSMUSP00000075235.5:p.Arg236Gly	H-2-Kb	8	6	6	KILYVGNL	KILYVRNL	NetMHCpan	196.2	215.1	1.096	278	0.155	256.171	227.973	0.89	207.1	254.27	215.1	196.2	240.8463117	258.0714726	299.0473787	299.0473787	SSC	1.585714286	1.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.161	278	0	0	NA	19qC1	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.689557206	sgMsh2	cell line
chr19	34593964	34593964	C	A	ENSMUST00000168254.2	2	ENSMUSG00000079339	missense	L/F	364	Ifit1bl1	ENSMUST00000168254.2:c.1092G>T	ENSMUSP00000132781.1:p.Leu364Phe	H-2-Kb	8	10	2	KFLNMSNL	KLLNMSNL	SMM	168.554	495.154	2.938	906	0.019	272.729	557.277	2.043	972.23	323.26	619.4	481	495.1536674	168.5543635	495.1536674	222.1979255	SSC	0.642857143	0.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.019	906	0	0	NA	19qC1	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.081376316	sgMsh2	cell line
chr19	5672533	5672533	G	A	ENSMUST00000113615.8	1	ENSMUSG00000054874	missense	A/V	1377	Pcnx3	ENSMUST00000113615.8:c.4130C>T	ENSMUSP00000109245.2:p.Ala1377Val	H-2-Kb	8	11	1	VSDYLNAL	ASDYLNAL	NetMHCpan	347.1	1320.6	3.805	54	0.185	389.737	1396.48	3.583	2502.1	436.46	1320.6	347.1	1345.054866	357.0590129	1447.904774	422.4156501	SSC	0.042857143	0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.19	54	0	0	NA	19qA	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	sgMsh2	cell line
chr18	37941753	37941753	A	G	ENSMUST00000043498.8	1	ENSMUSG00000024454	missense	S/P	312	Hdac3	ENSMUST00000043498.8:c.934T>C	ENSMUSP00000037981.7:p.Ser312Pro	H-2-Kb	8	6	6	WTYETPLL	WTYETSLL	SMMPMBEC	359.534	238.638	0.664	184	0.223	430.684	272.762	0.633	289.23	493.46	348.5	494.9	256.2949211	367.908651	238.6382195	359.5340277	SSC	-0.028571429	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.222	184	0	0	NA	18qB3	chr18-5046666-88869177	4	2	2	0.96	4.11164545	NA	1	0.95081801	sgMsh2	cell line
chr19	16383254	16383254	G	A	ENSMUST00000025541.5	1	ENSMUSG00000024639	missense	V/M	314	Gnaq	ENSMUST00000025541.5:c.940G>A	ENSMUSP00000025541.5:p.Val314Met	H-2-Kb	8	6	6	ILKMFMDL	ILKMFVDL	NetMHCpan	249.7	319.7	1.28	205	0.151	388.374	474.546	1.222	1460.9	633.96	319.7	249.7	595.3056439	459.9811133	353.7854762	316.7670499	SSC	0.971428571	1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.145	205	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.621029781	sgMsh2	cell line
chr18	37355814	37355814	A	G	ENSMUST00000051163.2	NA	ENSMUSG00000045876	missense	T/A	182	Pcdhb8	ENSMUST00000051163.2:c.544A>G	ENSMUSP00000054371.1:p.Thr182Ala	H-2-Kb	8	5	7	LHFHVVAL	LHFHVVTL	SMMPMBEC	402.476	633.49	1.574	207	0.343	420.325	659.284	1.569	1527.68	933.94	394.2	428.8	685.0779666	411.8508816	633.4903447	402.476011	SSC	1.485714286	1.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.335	207	0	0	NA	18qB3	chr18-5046666-88869177	4	2	2	0.96	4.11164545	NA	2	1	sgMsh2	cell line
chr18	37357271	37357271	G	T	ENSMUST00000051163.2	NA	ENSMUSG00000045876	missense	Q/H	667	Pcdhb8	ENSMUST00000051163.2:c.2001G>T	ENSMUSP00000054371.1:p.Gln667His	H-2-Kb	8	7	5	DGFSHPYL	DGFSQPYL	SMM	241.958	846.72	3.499	380	0.221	491.263	2308.602	4.699	7959.71	1456.94	3296.7	675.1	846.7203545	241.9580078	1320.504848	307.4255792	SSC	-0.1	-0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.221	380	0	0	NA	18qB3	chr18-5046666-88869177	4	2	2	0.96	4.11164545	NA	1	0.946535046	sgMsh2	cell line
chr19	4290661	4290661	T	C	ENSMUST00000088737.10	1	ENSMUSG00000024858	missense	M/V	257	Grk2	ENSMUST00000088737.10:c.769A>G	ENSMUSP00000086114.4:p.Met257Val	H-2-Kb	9	11	1	VSYAFHTPD	MSYAFHTPD	SMMPMBEC	46.158	119.468	2.588	225	0.124	51.279	157.215	3.066	193.34	55.34	264.8	139.7	121.0904798	47.21826226	119.4675617	46.15832068	SSC	-0.814285714	0.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.127	225	0	0	NA	19qA	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	sgMsh2	cell line
chr19	13861984	13861984	A	G	ENSMUST00000074221.1	NA	ENSMUSG00000056858	missense	S/G	64	Olfr1502	ENSMUST00000074221.1:c.190A>G	ENSMUSP00000073843.1:p.Ser64Gly	H-2-Kb	9	5	7	PMYFFLGHL	PMYFFLSHL	SMM	20.47	13.744	0.671	416	0.209	50.42	27.523	0.546	44.85	72.51	32.8	81.5	13.74390042	20.46963035	22.24590099	28.33022345	SSC	1.185714286	1.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.21	416	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.899422442	sgMsh2	cell line
chr19	13705156	13705156	A	G	ENSMUST00000216366.1	5	ENSMUSG00000051156	missense	T/A	110	Olfr1491	ENSMUST00000216366.1:c.328A>G	ENSMUSP00000149071.1:p.Thr110Ala	H-2-Kb	9	4	8	TQMFFFLAL	TQMFFFLTL	NetMHCpan	21.4	17.7	0.827	315	0.159	96.695	109.446	1.132	88.8	72.54	17.7	21.4	134.9304597	127.0895963	130.0918231	120.8509309	SSC	2.814285714	2.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.169	315	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.723820918	sgMsh2	cell line
chr19	31920923	31920923	A	G	ENSMUST00000075838.7	1	ENSMUSG00000052595	missense	R/G	236	A1cf	ENSMUST00000075838.7:c.706A>G	ENSMUSP00000075235.5:p.Arg236Gly	H-2-Kb	9	5	7	VKILYVGNL	VKILYVRNL	NetMHC	101.13	84.44	0.835	278	0.155	234.876	305.351	1.3	84.44	101.13	120.8	136.9	489.9028884	391.8411118	501.4758232	332.8511027	SSC	1.585714286	1.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.161	278	0	0	NA	19qC1	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.689557206	sgMsh2	cell line
chr19	37982988	37982988	C	A	ENSMUST00000041475.15	2	ENSMUSG00000048612	missense	R/M	272	Myof	ENSMUST00000041475.15:c.815G>T	ENSMUSP00000045036.8:p.Arg272Met	H-2-Kb	9	3	9	RVYNSHSLM	RVYNSHSLR	NetMHC	104.07	5293.71	50.867	250	0.104	226.354	4944.167	21.843	5293.71	104.07	10734.3	162.9	3259.192408	289.8077532	4594.624246	340.6042008	SSC	-0.557142857	-0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.106	250	0	0	NA	19qC2	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.453994185	sgMsh2	cell line
chr19	6011343	6011343	G	T	ENSMUST00000025891.9	1	ENSMUSG00000024942	missense	Q/K	182	Capn1	ENSMUST00000025891.9:c.544C>A	ENSMUSP00000025891.8:p.Gln182Lys	H-2-Kb	9	11	1	KGNEFWSAL	QGNEFWSAL	NetMHC	118.09	132.59	1.123	58	0.224	359.595	400.861	1.115	132.59	118.09	393.3	165.7	408.4228203	553.4902819	523.901932	571.8077009	SSC	-0.042857143	-0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.232	58	0	0	NA	19qA	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	sgMsh2	cell line
chr18	22920873	22920873	A	G	ENSMUST00000164186.7	5	ENSMUSG00000041923	missense	I/T	194	Nol4	ENSMUST00000164186.7:c.581T>C	ENSMUSP00000130950.1:p.Ile194Thr	H-2-Kb	9	11	1	TTMAYMKHM	ITMAYMKHM	NetMHCpan	67.1	23.3	0.347	85	0.224	276.977	150.303	0.543	53.86	145.4	23.3	67.1	318.5004131	545.8961105	246.7459312	408.5545015	SSC	-0.128571429	-0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.241	85	0	0	NA	18qA2	chr18-5046666-88869177	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr19	34593964	34593964	C	A	ENSMUST00000168254.2	2	ENSMUSG00000079339	missense	L/F	364	Ifit1bl1	ENSMUST00000168254.2:c.1092G>T	ENSMUSP00000132781.1:p.Leu364Phe	H-2-Kb	9	6	6	DNFQKFLNM	DNFQKLLNM	NetMHC	182.92	895.64	4.896	906	0.019	215.428	722.116	3.352	895.64	182.92	1197.1	277.9	437.6329367	196.8384788	548.5926694	234.0183969	SSC	0.057142857	0.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.019	906	0	0	NA	19qC1	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.081376316	sgMsh2	cell line
chr19	13454083	13454083	A	G	ENSMUST00000096201.3	5	ENSMUSG00000095189	missense	C/R	145	Olfr1472	ENSMUST00000096201.3:c.433T>C	ENSMUSP00000093915.3:p.Cys145Arg	H-2-Kb	9	9	3	VTRCYMCGI	VTCCYMCGI	NetMHC	188.33	441.89	2.346	561	0.185	299.238	609.711	2.038	441.89	188.33	758.9	198.3	783.6280984	422.7756832	460.5215948	400.1750427	SSC	0.742857143	0.742857143	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.188	561	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.805197234	sgMsh2	cell line
chr19	34495079	34495079	T	A	ENSMUST00000049572.14	1	ENSMUSG00000024781	missense	N/I	314	Lipa	ENSMUST00000049572.14:c.941A>T	ENSMUSP00000053270.8:p.Asn314Ile	H-2-Kb	9	11	1	IYFHYNQSF	NYFHYNQSF	SMMPMBEC	178.752	1092.069	6.109	107	0.103	214.115	1375.179	6.423	1567	205.33	1496.9	262.3	1253.458616	222.8999649	1092.068801	178.7516256	SSC	-0.957142857	-0.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.109	107	0	0	NA	19qC1	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.466843077	sgMsh2	cell line
chr18	37680939	37680939	G	T	ENSMUST00000192931.1	1	ENSMUSG00000103037	missense	S/I	161	Pcdhgb1	ENSMUST00000192931.1:c.482G>T	ENSMUSP00000141348.1:p.Ser161Ile	H-2-Kb	9	10	2	VIPNPHFSL	VSPNPHFSL	NetMHC	211.65	119.37	0.564	180	0.522	410.119	267.215	0.652	119.37	211.65	107.8	235.3	415.0591573	584.9382211	522.696991	774.9077422	SSC	-0.585714286	0.228571429	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.521	180	0	0	NA	18qB3	chr18-5046666-88869177	4	2	2	0.96	4.11164545	NA	2	1	sgMsh2	cell line
chr19	16383254	16383254	G	A	ENSMUST00000025541.5	1	ENSMUSG00000024639	missense	V/M	314	Gnaq	ENSMUST00000025541.5:c.940G>A	ENSMUSP00000025541.5:p.Val314Met	H-2-Kb	9	5	7	FILKMFMDL	FILKMFVDL	NetMHC	268.8	623.27	2.319	205	0.151	358.268	502.216	1.402	623.27	268.8	645.4	411.6	381.1623536	362.3347605	317.8703353	354.201177	SSC	0.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.145	205	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.621029781	sgMsh2	cell line
chr19	34495079	34495079	T	A	ENSMUST00000049572.14	1	ENSMUSG00000024781	missense	N/I	314	Lipa	ENSMUST00000049572.14:c.941A>T	ENSMUSP00000053270.8:p.Asn314Ile	H-2-Kb	9	10	2	KIYFHYNQS	KNYFHYNQS	SMM	64.88	48.99	0.755	107	0.103	249.819	160.276	0.642	266.32	412.09	254.9	592.1	48.99028884	64.87987433	65.65230826	87.54876014	SSC	-1.542857143	-0.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.109	107	0	0	NA	19qC1	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.466843077	sgMsh2	cell line
chr19	34620037	34620037	T	C	ENSMUST00000087357.4	1	ENSMUSG00000067297	missense	I/V	60	Ifit1bl2	ENSMUST00000087357.4:c.178A>G	ENSMUSP00000093816.2:p.Ile60Val	H-2-Kb	9	9	3	YSVGMHNLL	YSIGMHNLL	SMM	380.286	260.082	0.684	271	0.173	455.117	282.173	0.62	226.52	468.41	459.6	891.9	260.0818226	380.2857045	304.2636004	441.8247089	SSC	0.942857143	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.176	271	0	0	NA	19qC1	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.753801666	sgMsh2	cell line
chr18	37941753	37941753	A	G	ENSMUST00000043498.8	1	ENSMUSG00000024454	missense	S/P	312	Hdac3	ENSMUST00000043498.8:c.934T>C	ENSMUSP00000037981.7:p.Ser312Pro	H-2-Kb	9	4	8	RCWTYETPL	RCWTYETSL	SMMPMBEC	408.555	698.634	1.71	184	0.223	457.95	789.442	1.724	880.25	477.4	638	438.5	1244.829868	714.6773197	698.6344547	408.5545015	SSC	-0.7	-0.7	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.222	184	0	0	NA	18qB3	chr18-5046666-88869177	4	2	2	0.96	4.11164545	NA	1	0.95081801	sgMsh2	cell line
chr18	80971684	80971684	CT	C	ENSMUST00000238808.1	NA	ENSMUSG00000024565	FS	S/X	1010	Sall3	ENSMUST00000238808.1:c.3028del	ENSMUSP00000158909.1:p.Ser1010ValfsTer31	H-2-Kb	9	18	0	AAIPRRGRL	NA	SMMPMBEC	325.274	NA	NA	29	0.172	475.802	NA	NA	NA	540.35	NA	758	NA	411.2538721	NA	325.2744865	SSC	-1.028571429	-0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1724	29	0	0	NA	18qE3	chr18-5046666-88869177	4	2	2	0.96	4.11164545	NA	1	0.738382995	sgMsh2	cell line
chr19	13705156	13705156	A	G	ENSMUST00000216366.1	5	ENSMUSG00000051156	missense	T/A	110	Olfr1491	ENSMUST00000216366.1:c.328A>G	ENSMUSP00000149071.1:p.Thr110Ala	H-2-Kb	9	5	7	QMFFFLALG	QMFFFLTLG	SMM	107.922	144.248	1.337	315	0.159	440.66	649.506	1.474	1099.37	734.68	1443.9	1219.9	144.2480663	107.9220037	199.6411211	146.6391721	SSC	2.485714286	2.814285714	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.169	315	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.723820918	sgMsh2	cell line
chr19	34495079	34495079	T	A	ENSMUST00000049572.14	1	ENSMUSG00000024781	missense	N/I	314	Lipa	ENSMUST00000049572.14:c.941A>T	ENSMUSP00000053270.8:p.Asn314Ile	H-2-Kb	10	10	2	KIYFHYNQSF	KNYFHYNQSF	NetMHCpan	234.5	117.4	0.501	107	0.103	484.311	421.142	0.87	191.66	238.61	117.4	234.5	650.6238811	730.0120014	674.3106206	763.5895917	SSC	-0.957142857	-0.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.109	107	0	0	NA	19qC1	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.466843077	sgMsh2	cell line
chr2	37414545	37414545	A	G	ENSMUST00000100143.9	5	ENSMUSG00000075376	missense	F/L	68	Rc3h2	ENSMUST00000100143.9:c.202T>C	ENSMUSP00000097721.3:p.Phe68Leu	H-2-Db	9	6	6	VLPVNLALL	VLPVNFALL	NetMHC	230.93	262.08	1.135	43	0.209	339.568	366.605	1.08	262.08	230.93	678	978.4	358.6080216	326.3021986	374.6019209	352.8336521	SSC	1.757142857	1.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.231	43	0	0	NA	2qB	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	0.989364686	sgMsh2	cell line
chr2	25231426	25231426	TC	T	ENSMUST00000006638.7	1	ENSMUSG00000006469	FS	E/X	280	Slc34a3	ENSMUST00000006638.7:c.838del	ENSMUSP00000006638.7:p.Glu280ArgfsTer73	H-2-Db	9	73	0	SSSLNCSTL	NA	SMM	98.542	NA	NA	98	0.112	132.322	NA	NA	NA	406.43	NA	147	NA	98.54168859	NA	117.6440589	SSC	0.614285714	0.614285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.119	98	0	0	NA	2qA3	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	0.509672717	sgMsh2	cell line
chr2	58147878	58147878	A	G	ENSMUST00000028175.6	1	ENSMUSG00000026832	missense	L/P	158	Cytip	ENSMUST00000028175.6:c.473T>C	ENSMUSP00000028175.6:p.Leu158Pro	H-2-Db	9	5	7	RSSGNLPTI	RSSGNLLTI	SMMPMBEC	191.677	218.057	1.138	209	0.019	326.425	312.144	0.956	1247.87	2057.53	397.5	441.2	226.7879629	211.6508417	218.0569835	191.6769985	SSC	0.185714286	0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.024	209	0	0	NA	2qC1.1	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	0.102791136	sgMsh2	cell line
chr2	32096059	32096059	A	G	ENSMUST00000057423.5	1	ENSMUSG00000051373	missense	N/S	83	Plpp7	ENSMUST00000057423.5:c.248A>G	ENSMUSP00000054337.5:p.Asn83Ser	H-2-Kb	8	6	6	KGIAFSSL	KGIAFNSL	NetMHC	17.64	43.84	2.485	39	0.282	39.051	71.041	1.819	43.84	17.64	52.6	22.8	89.4828896	55.30189331	96.10367602	55.68522772	SSC	1.557142857	1.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.308	39	0	0	NA	2qB	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr2	25493787	25493787	T	C	ENSMUST00000028312.12	1	ENSMUSG00000026943	missense	M/V	24	Lcn12	ENSMUST00000028312.12:c.70A>G	ENSMUSP00000028312.6:p.Met24Val	H-2-Kb	8	11	1	VSQGFPQM	MSQGFPQM	NetMHC	67.96	316.47	4.657	86	0.174	107.588	290.453	2.7	316.47	67.96	277	90.8	265.3016799	124.3769779	303.9065077	143.4630303	SSC	-0.728571429	-0.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.167	86	0	0	NA	2qA3	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	0.71525499	sgMsh2	cell line
chr2	26950091	26950091	C	T	ENSMUST00000055406.8	1	ENSMUSG00000049897	missense	T/I	391	Stkld1	ENSMUST00000055406.8:c.1172C>T	ENSMUSP00000062967.8:p.Thr391Ile	H-2-Kb	8	5	7	ISFLMDIL	ISFLMDTL	NetMHCpan	63.7	32.2	0.505	62	0.194	73.561	31.721	0.431	25.59	75.55	32.2	63.7	31.24208431	71.57148034	33.39950266	87.24489012	SSC	1.785714286	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.189	62	0	0	NA	2qA3	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	0.809480198	sgMsh2	cell line
chr2	25231426	25231426	TC	T	ENSMUST00000006638.7	1	ENSMUSG00000006469	FS	E/X	280	Slc34a3	ENSMUST00000006638.7:c.838del	ENSMUSP00000006638.7:p.Glu280ArgfsTer73	H-2-Kb	8	69	0	VSVWSSSL	NA	NetMHC	87.54	NA	NA	98	0.112	128.516	NA	NA	NA	87.54	NA	102.6	NA	154.4329616	NA	190.4320313	SSC	0.557142857	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.119	98	0	0	NA	2qA3	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	0.509672717	sgMsh2	cell line
chr19	60543015	60543015	A	G	ENSMUST00000081790.14	1	ENSMUSG00000033417	missense	L/P	272	Cacul1	ENSMUST00000081790.14:c.815T>C	ENSMUSP00000080480.7:p.Leu272Pro	H-2-Kb	8	7	5	HIYSPMPL	HIYSLMPL	NetMHC	102.16	23.14	0.227	205	0.156	175.742	65.577	0.373	23.14	102.16	67.5	269.1	66.02980276	166.241711	65.12383991	185.2422298	SSC	0.7	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.158	205	0	0	NA	19qD3	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.676708314	sgMsh2	cell line
chr2	37414545	37414545	A	G	ENSMUST00000100143.9	5	ENSMUSG00000075376	missense	F/L	68	Rc3h2	ENSMUST00000100143.9:c.202T>C	ENSMUSP00000097721.3:p.Phe68Leu	H-2-Kb	8	9	3	VNLALLQL	VNFALLQL	NetMHCpan	83.1	13	0.156	43	0.209	124.295	28.013	0.225	27.86	130.9	13	83.1	28.16696149	117.6901185	33.47649647	144.7904774	SSC	1.428571429	1.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.231	43	0	0	NA	2qB	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	0.989364686	sgMsh2	cell line
chr2	25201148	25201148	G	T	ENSMUST00000059849.14	1	ENSMUSG00000013465	missense	L/I	513	Nelfb	ENSMUST00000059849.14:c.1537C>A	ENSMUSP00000057731.9:p.Leu513Ile	H-2-Kb	8	6	6	FSDIFIHL	FSDIFLHL	SMMPMBEC	83.703	98.342	1.175	68	0.221	118.181	155.988	1.32	213.18	151.3	287.7	340.7	98.79614526	85.06286381	98.3422182	83.70280268	SSC	1.157142857	1.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.234	68	0	0	NA	2qA3	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr2	69483430	69483430	T	G	ENSMUST00000080953.11	5	ENSMUSG00000027070	missense	D/A	2319	Lrp2	ENSMUST00000080953.11:c.6956A>C	ENSMUSP00000079752.5:p.Asp2319Ala	H-2-Kb	8	8	4	VIRASINL	VIRDSINL	SMM	119.602	228.423	1.91	161	0.143	180.124	445.451	2.473	510.94	164.03	570.2	387.5	228.4230889	119.6024291	379.9618556	196.218522	SSC	0.828571429	0.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.151	161	0	0	NA	2qC2	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	0.646727566	sgMsh2	cell line
chr2	25231426	25231426	TC	T	ENSMUST00000006638.7	1	ENSMUSG00000006469	FS	E/X	280	Slc34a3	ENSMUST00000006638.7:c.838del	ENSMUSP00000006638.7:p.Glu280ArgfsTer73	H-2-Kb	8	74	0	SSLNCSTL	NA	SMM	136.691	NA	NA	98	0.112	155.994	NA	NA	NA	166.53	NA	309.3	NA	136.691025	NA	145.4587999	SSC	0.614285714	0.614285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.119	98	0	0	NA	2qA3	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	0.509672717	sgMsh2	cell line
chr2	37202003	37202003	A	AT	ENSMUST00000218602.1	5	ENSMUSG00000059429	FS	Y/YX	254	Olfr365	ENSMUST00000218602.1:c.762dup	ENSMUSP00000151617.1:p.Gly255TrpfsTer9	H-2-Kb	8	9	4	LFYWEYHL	NA	SMMPMBEC	158.03	NA	NA	274	0.237	180.961	NA	NA	NA	188.31	NA	178.8	NA	183.1217795	NA	158.0301673	SSC	-0.514285714	-0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.241	274	0	0	NA	2qB	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr2	37085433	37085433	A	C	ENSMUST00000214969.1	5	ENSMUSG00000075378	missense	M/R	105	Olfr361	ENSMUST00000214969.1:c.314T>G	ENSMUSP00000149234.1:p.Met105Arg	H-2-Kb	8	6	6	QLFSFRTV	QLFSFMTV	NetMHCpan	96.8	97.9	1.011	272	0.335	221.142	175.096	0.792	158.88	206.92	97.9	96.8	191.3110256	235.3639803	246.456343	278.4453695	SSC	1.085714286	1.085714286	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.335	272	0	0	NA	2qB	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	2	1	sgMsh2	cell line
chr2	32578965	32578965	GA	G	ENSMUST00000055304.13	1	ENSMUSG00000046854	FS	K/X	199	Pip5kl1	ENSMUST00000055304.13:c.599del	ENSMUSP00000051282.7:p.Lys200ArgfsTer28	H-2-Kb	8	22	0	STLPAAFL	NA	SMM	136.063	NA	NA	221	0.308	225.072	NA	NA	NA	247.03	NA	312.7	NA	136.0629867	NA	203.114066	SSC	1.671428571	1.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.298	221	0	0	NA	2qB	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr19	38400469	38400469	T	A	ENSMUST00000054098.3	1	ENSMUSG00000044026	missense	L/M	75	Slc35g1	ENSMUST00000054098.3:c.223T>A	ENSMUSP00000061282.2:p.Leu75Met	H-2-Kb	8	9	3	LGMFYTVL	LGLFYTVL	NetMHCpan	25.8	40.3	1.562	148	0.176	215.12	141.085	0.656	251.45	252.44	40.3	25.8	145.794117	250.4609364	136.3766443	179.7794304	SSC	1.471428571	1.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.186	148	0	0	NA	19qC3	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.796631306	sgMsh2	cell line
chr2	37540510	37540510	T	C	ENSMUST00000061179.11	1	ENSMUSG00000035437	missense	C/R	688	Rabgap1	ENSMUST00000061179.11:c.2062T>C	ENSMUSP00000061624.5:p.Cys688Arg	H-2-Kb	8	9	3	LHRKFYQL	LHCKFYQL	SMM	224.254	264.083	1.178	75	0.067	251.664	429.191	1.705	627.66	277.52	594.3	344.8	264.0827294	224.2538976	211.2224132	225.8083514	SSC	-1.4	-1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.081	75	0	0	NA	2qB	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	0.346920085	sgMsh2	cell line
chr2	26935351	26935351	A	G	ENSMUST00000055406.8	1	ENSMUSG00000049897	missense	N/S	10	Stkld1	ENSMUST00000055406.8:c.29A>G	ENSMUSP00000062967.8:p.Asn10Ser	H-2-Kb	8	9	2	VSLVVEEL	VNLVVEEL	NetMHC	298.06	827.1	2.775	71	0.254	351.98	706.185	2.006	827.1	298.06	634.8	446.5	611.9839043	330.9329418	777.5709016	373.0267702	SSC	1.171428571	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.262	71	0	0	NA	2qA3	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr2	31912023	31912023	A	T	ENSMUST00000028187.6	1	ENSMUSG00000026840	missense	H/L	481	Lamc3	ENSMUST00000028187.6:c.1442A>T	ENSMUSP00000028187.6:p.His481Leu	H-2-Kb	8	4	8	GTFNLQPL	GTFNLQPH	SMMPMBEC	183.544	7938.528	43.251	106	0.236	232.877	24312.774	104.402	31024.73	345.98	21664.3	241.5	26961.24854	224.2538976	7938.528349	183.5439188	SSC	0.157142857	0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.221	106	0	0	NA	2qB	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	0.946535046	sgMsh2	cell line
chr2	26983866	26983866	T	A	ENSMUST00000102891.3	1	ENSMUSG00000014852	missense	C/S	376	Adamts13	ENSMUST00000102891.3:c.1126T>A	ENSMUSP00000099955.3:p.Cys376Ser	H-2-Kb	8	10	2	RSRSLAEL	RCRSLAEL	SMM	299.737	3554.185	11.858	79	0.19	354.78	5801.142	16.351	11155.42	377.1	8048.1	1335.6	3554.184757	299.7367541	2810.217928	332.4604589	SSC	-0.028571429	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.19	79	0	0	NA	2qA3	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	0.813763162	sgMsh2	cell line
chr2	32096059	32096059	A	G	ENSMUST00000057423.5	1	ENSMUSG00000051373	missense	N/S	83	Plpp7	ENSMUST00000057423.5:c.248A>G	ENSMUSP00000054337.5:p.Asn83Ser	H-2-Kb	9	6	6	KGIAFSSLL	KGIAFNSLL	NetMHC	49.45	147.45	2.982	39	0.282	240.453	466.442	1.94	147.45	49.45	132	55.2	785.4345477	425.7062242	802.1396792	611.2938126	SSC	2.157142857	2.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.308	39	0	0	NA	2qB	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr2	37202003	37202003	A	AT	ENSMUST00000218602.1	5	ENSMUSG00000059429	FS	Y/YX	254	Olfr365	ENSMUST00000218602.1:c.762dup	ENSMUSP00000151617.1:p.Gly255TrpfsTer9	H-2-Kb	9	8	5	VLFYWEYHL	NA	NetMHCpan	45.2	NA	NA	274	0.237	95.931	NA	NA	NA	82.69	NA	45.2	NA	109.1716816	NA	130.6922997	SSC	-0.514285714	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.241	274	0	0	NA	2qB	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr2	32096059	32096059	A	G	ENSMUST00000057423.5	1	ENSMUSG00000051373	missense	N/S	83	Plpp7	ENSMUST00000057423.5:c.248A>G	ENSMUSP00000054337.5:p.Asn83Ser	H-2-Kb	9	8	4	IAFSSLLAI	IAFNSLLAI	NetMHCpan	126.5	133.2	1.053	39	0.282	230.074	260.76	1.133	180.13	192.78	133.2	126.5	380.2857045	267.3683525	341.3893746	329.0409876	SSC	2.157142857	2.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.308	39	0	0	NA	2qB	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr2	61806339	61806339	TA	T	ENSMUST00000102737.4	2	ENSMUSG00000035033	FS	K/X	8	Tbr1	ENSMUST00000102737.4:c.31del	ENSMUSP00000099798.4:p.Ser11AlafsTer36	H-2-Kb	9	5	7	RGFKKKAQL	RGFKKKSPA	NetMHC	203.62	4296.19	21.099	69	0.275	381.031	3670.68	9.634	4296.19	203.62	3485.6	329.3	3855.760057	648.7987433	3127.879401	432.7628777	SSC	-0.971428571	-0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2754	69	0	0	NA	2qC1.3	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr2	37085433	37085433	A	C	ENSMUST00000214969.1	5	ENSMUSG00000075378	missense	M/R	105	Olfr361	ENSMUST00000214969.1:c.314T>G	ENSMUSP00000149234.1:p.Met105Arg	H-2-Kb	9	8	4	FSFRTVGSM	FSFMTVGSM	NetMHC	223	207.93	0.932	272	0.335	464.706	385.207	0.829	207.93	223	201	246.9	562.4837755	682.5115418	563.9622051	740.0311486	SSC	0.357142857	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.335	272	0	0	NA	2qB	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	2	1	sgMsh2	cell line
chr19	60543015	60543015	A	G	ENSMUST00000081790.14	1	ENSMUSG00000033417	missense	L/P	272	Cacul1	ENSMUST00000081790.14:c.815T>C	ENSMUSP00000080480.7:p.Leu272Pro	H-2-Kb	9	7	5	HIYSPMPLL	HIYSLMPLL	SMM	223.929	166.001	0.741	205	0.156	350.975	195.01	0.556	172.52	267.65	217.5	434.3	166.0007308	223.9288243	260.7654204	445.9128626	SSC	0.6	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.158	205	0	0	NA	19qD3	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.676708314	sgMsh2	cell line
chr2	37414545	37414545	A	G	ENSMUST00000100143.9	5	ENSMUSG00000075376	missense	F/L	68	Rc3h2	ENSMUST00000100143.9:c.202T>C	ENSMUSP00000097721.3:p.Phe68Leu	H-2-Kb	9	9	3	VNLALLQLV	VNFALLQLV	NetMHC	330.6	79.15	0.239	43	0.209	408.521	107.778	0.264	79.15	330.6	84	576.7	131.5558	369.0710667	161.5288124	447.9711029	SSC	2.528571429	2.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.231	43	0	0	NA	2qB	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	0.989364686	sgMsh2	cell line
chr2	25231426	25231426	TC	T	ENSMUST00000006638.7	1	ENSMUSG00000006469	FS	E/X	280	Slc34a3	ENSMUST00000006638.7:c.838del	ENSMUSP00000006638.7:p.Glu280ArgfsTer73	H-2-Kb	9	68	0	SVSVWSSSL	NA	NetMHC	356.02	NA	NA	98	0.112	492.703	NA	NA	NA	356.02	NA	447	NA	538.4061351	NA	834.1612282	SSC	0.557142857	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.119	98	0	0	NA	2qA3	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	0.509672717	sgMsh2	cell line
chr19	50225226	50225226	TC	T	ENSMUST00000209413.1	1	ENSMUSG00000043531	FS	E/X	688	Sorcs1	ENSMUST00000209413.1:c.2062del	ENSMUSP00000147463.1:p.Glu688LysfsTer94	H-2-Kb	9	43	0	LVFVQRQTL	NA	NetMHCpan	308.9	NA	NA	98	0.184	379.9	NA	NA	NA	366.15	NA	308.9	NA	393.6497682	NA	504.9518876	SSC	-0.2	0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.19	98	0	0	NA	19qD1	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.813763162	sgMsh2	cell line
chr19	50225226	50225226	TC	T	ENSMUST00000209413.1	1	ENSMUSG00000043531	FS	E/X	688	Sorcs1	ENSMUST00000209413.1:c.2062del	ENSMUSP00000147463.1:p.Glu688LysfsTer94	H-2-Kb	9	18	0	RGYTRRESL	NA	NetMHCpan	291.2	NA	NA	98	0.184	430.122	NA	NA	NA	387.91	NA	291.2	NA	618.1729539	NA	472.3348608	SSC	-1.642857143	-1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.19	98	0	0	NA	19qD1	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.813763162	sgMsh2	cell line
chr19	50225226	50225226	TC	T	ENSMUST00000209413.1	1	ENSMUSG00000043531	FS	E/X	688	Sorcs1	ENSMUST00000209413.1:c.2062del	ENSMUSP00000147463.1:p.Glu688LysfsTer94	H-2-Kb	9	90	0	LGIGRWSPI	NA	NetMHCpan	259.7	NA	NA	98	0.184	359.44	NA	NA	NA	431.5	NA	259.7	NA	429.6452354	NA	289.2344371	SSC	0.114285714	0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.19	98	0	0	NA	19qD1	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.813763162	sgMsh2	cell line
chr2	37202003	37202003	A	AT	ENSMUST00000218602.1	5	ENSMUSG00000059429	FS	Y/YX	254	Olfr365	ENSMUST00000218602.1:c.762dup	ENSMUSP00000151617.1:p.Gly255TrpfsTer9	H-2-Kb	9	10	3	FYWEYHLCL	NA	SMMPMBEC	298.71	NA	NA	274	0.237	449.646	NA	NA	NA	994.26	NA	502	NA	397.2921646	NA	298.7101638	SSC	0.171428571	0.171428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.241	274	0	0	NA	2qB	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr2	104430235	104430235	A	G	ENSMUST00000028600.13	1	ENSMUSG00000027177	missense	F/L	1067	Hipk3	ENSMUST00000028600.13:c.3199T>C	ENSMUSP00000028600.7:p.Phe1067Leu	H-2-Db	9	5	7	SVTSNPLTL	SVTSNPFTL	SMM	337.769	249.816	0.74	124	0.048	482.701	257.573	0.534	265.33	565	238.9	505.6	249.8158561	337.7691648	328.5261922	459.8010937	SSC	0.042857143	0.1	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;Vardict	3	0.05	124	0	0	NA	2qE2	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	0.214148201	sgMsh2	cell line
chr2	91212313	91212313	T	C	ENSMUST00000028696.4	1	ENSMUSG00000002109	missense	N/D	401	Ddb2	ENSMUST00000028696.4:c.1201A>G	ENSMUSP00000028696.4:p.Asn401Asp	H-2-Db	9	5	7	TSLNEFDPM	TSLNEFNPM	NetMHCpan	311.5	820.6	2.634	271	0.162	424.011	1056.963	2.493	3969.66	1659.2	820.6	311.5	1263.63021	492.7424743	850.2957336	355.2793781	SSC	-0.514285714	-0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.156	271	0	0	NA	2qE1	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.668142386	sgMsh2	cell line
chr2	89977882	89977882	C	T	ENSMUST00000111512.9	2	ENSMUSG00000042894	missense	L/F	35	Olfr1260	ENSMUST00000111512.9:c.103C>T	ENSMUSP00000107137.1:p.Leu35Phe	H-2-Kb	8	7	5	LIYSFTLI	LIYSLTLI	NetMHCpan	11.9	188.2	15.815	286	0.133	32.154	424.803	13.211	291.47	11.98	188.2	11.9	654.2443789	62.04974485	558.1359543	52.32870654	SSC	1.828571429	1.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.136	286	0	0	NA	2qE1	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.582483105	sgMsh2	cell line
chr2	111780515	111780515	A	G	ENSMUST00000054004.1	NA	ENSMUSG00000044560	missense	N/S	68	Olfr1302	ENSMUST00000054004.1:c.203A>G	ENSMUSP00000061674.1:p.Asn68Ser	H-2-Kb	8	5	7	MYFLLASL	MYFLLANL	NetMHCpan	48.7	29.1	0.598	462	0.022	64.796	27.562	0.425	21.1	65.51	29.1	48.7	27.08569601	66.48749949	28.03754606	64.08258172	SSC	1.985714286	1.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.02	462	0	0	NA	2qE3	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	0.08565928	sgMsh2	cell line
chr2	111780515	111780515	A	G	ENSMUST00000054004.1	NA	ENSMUSG00000044560	missense	N/S	68	Olfr1302	ENSMUST00000054004.1:c.203A>G	ENSMUSP00000061674.1:p.Asn68Ser	H-2-Kb	8	10	2	ASLSFVDM	ANLSFVDM	NetMHC	70.65	184.82	2.616	462	0.022	136.372	278.066	2.039	184.82	70.65	146.4	89.2	371.3128679	200.7890385	382.5956254	183.5439188	SSC	1.085714286	1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.02	462	0	0	NA	2qE3	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	0.08565928	sgMsh2	cell line
chr2	89296493	89296493	G	T	ENSMUST00000099787.1	NA	ENSMUSG00000075094	missense	P/H	259	Olfr1230	ENSMUST00000099787.1:c.776C>A	ENSMUSP00000097375.1:p.Pro259His	H-2-Kb	8	5	7	IILYMRHV	IILYMRPV	NetMHC	110.45	93.66	0.848	234	0.124	275.635	190.876	0.692	93.66	110.45	196.7	268.3	189.5570756	290.8975074	192.1940772	282.9697428	SSC	0.771428571	0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.13	234	0	0	NA	2qE1	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.556785321	sgMsh2	cell line
chr2	91480474	91480474	A	G	ENSMUST00000028689.3	1	ENSMUSG00000027253	missense	H/R	620	Lrp4	ENSMUST00000028689.3:c.1859A>G	ENSMUSP00000028689.3:p.His620Arg	H-2-Kb	8	11	1	RVIERANL	HVIERANL	NetMHCpan	173.1	960.6	5.549	89	0.191	250.512	917.53	3.663	984.16	192.18	960.6	173.1	874.4601036	330.1718172	660.2980276	308.8445912	SSC	0.4	0.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.199	89	0	0	NA	2qE1	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.852309838	sgMsh2	cell line
chr2	119139420	119139420	GT	G	ENSMUST00000094695.11	1	ENSMUSG00000070730	FS	T/X	387	Rmdn3	ENSMUST00000094695.11:c.1159del	ENSMUSP00000092283.5:p.Thr387ArgfsTer46	H-2-Kb	8	37	0	YSQDFQKL	NA	SMM	227.898	NA	NA	118	0.263	263.57	NA	NA	NA	233.55	NA	302.9	NA	227.8977303	NA	293.5891489	SSC	-1.228571429	-1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.258	118	0	0	NA	2qE5	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr2	89363319	89363319	C	T	ENSMUST00000137692.2	3	ENSMUSG00000075090	missense	V/I	37	Olfr1234	ENSMUST00000137692.2:c.109G>A	ENSMUSP00000149303.1:p.Val37Ile	H-2-Kb	8	8	4	IVTIMGNL	IVTVMGNL	SMM	216.641	199.407	0.92	156	0.026	226.605	193.397	0.853	173.44	234.62	233.3	230.5	199.4068165	216.6406749	187.3872337	222.7101447	SSC	1.4	1.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.033	156	0	0	NA	2qE1	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.141337812	sgMsh2	cell line
chr2	88101738	88101738	A	C	ENSMUST00000117860.1	NA	ENSMUSG00000046590	missense	L/R	83	Olfr1165-ps	ENSMUST00000117860.1:c.248T>G	ENSMUSP00000149054.1:p.Leu83Arg	H-2-Kb	8	5	7	SVFTPKRL	SVFTPKLL	SMMPMBEC	174.88	413.752	2.366	358	0.184	193.199	403.987	2.091	456.57	249.7	309.9	209.9	394.2212222	176.4980859	413.7518989	174.8799418	SSC	0.014285714	0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.183	358	0	0	NA	2qD	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.783782414	sgMsh2	cell line
chr2	88794555	88794555	T	C	ENSMUST00000216213.1	5	ENSMUSG00000059023	missense	Y/H	58	Olfr1201	ENSMUST00000216213.1:c.172T>C	ENSMUSP00000150454.1:p.Tyr58His	H-2-Kb	8	10	2	MHFFLFYL	MYFFLFYL	SMM	74.087	119.327	1.611	379	0.169	100.741	203.67	2.022	318.98	257.59	277.4	112	119.3273511	74.08665723	129.9391436	89.4828896	SSC	1.642857143	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.171	379	0	0	NA	2qE1	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.732386846	sgMsh2	cell line
chr2	87645748	87645748	A	G	ENSMUST00000217368.1	5	ENSMUSG00000075155	missense	V/A	125	Olfr1133	ENSMUST00000217368.1:c.374T>C	ENSMUSP00000149460.1:p.Val125Ala	H-2-Kb	8	5	7	MAYDHYAA	MAYDHYVA	NetMHCpan	290	512.6	1.768	434	0.145	403.45	1335.053	3.309	1688.98	303.7	512.6	290	1185.059074	503.1992672	1485.04632	660.2980276	SSC	-0.557142857	-0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.141	434	0	0	NA	2qD	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.603897925	sgMsh2	cell line
chr2	87213354	87213354	A	G	ENSMUST00000215611.1	5	ENSMUSG00000070857	missense	K/R	154	Olfr1113	ENSMUST00000215611.1:c.461A>G	ENSMUSP00000150991.1:p.Lys154Arg	H-2-Kb	8	9	3	SSRVCTQL	SSKVCTQL	SMMPMBEC	194.42	497.439	2.559	527	0.034	293.439	1267.961	4.321	2615.88	365.7	1828.4	868.7	707.5220838	221.1770188	497.4391928	194.4195797	SSC	0.142857143	0.142857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.035	527	0	0	NA	2qD	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.14990374	sgMsh2	cell line
chr2	88767458	88767458	T	A	ENSMUST00000217588.2	5	ENSMUSG00000075115	missense	T/S	286	Olfr1200	ENSMUST00000217588.2:c.856A>T	ENSMUSP00000149757.1:p.Thr286Ser	H-2-Kb	8	8	4	VIYSLRNS	VIYTLRNS	SMM	80.675	74.945	0.929	388	0.131	290.039	253.26	0.873	376.58	439.88	1232.4	1339.4	74.94454029	80.67519058	129.9391436	140.197413	SSC	-0.371428571	0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.136	388	0	0	NA	2qE1	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.582483105	sgMsh2	cell line
chr2	83007483	83007483	A	G	ENSMUST00000143764.8	5	ENSMUSG00000075249	missense	I/V	6931	Fsip2	ENSMUST00000143764.8:c.20791A>G	ENSMUSP00000120314.2:p.Ile6931Val	H-2-Kb	8	4	8	NSLEFVTV	NSLEFVTI	NetMHCpan	303.2	273.9	0.903	187	0.086	339.714	575.96	1.695	948.48	547.87	273.9	303.2	591.2075887	325.64169	560.7121928	353.7854762	SSC	1.428571429	1.428571429	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.095	187	0	0	NA	2qD	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.406881581	sgMsh2	cell line
chr2	104430235	104430235	A	G	ENSMUST00000028600.13	1	ENSMUSG00000027177	missense	F/L	1067	Hipk3	ENSMUST00000028600.13:c.3199T>C	ENSMUSP00000028600.7:p.Phe1067Leu	H-2-Kb	8	4	8	TSVTSNPL	TSVTSNPF	SMM	362.861	5898.478	16.255	124	0.048	474.993	5356.095	11.276	5862.21	563.85	4525.4	1223.9	5898.47849	362.8607551	4849.980584	386.1357391	SSC	0.085714286	0.085714286	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;Vardict	3	0.05	124	0	0	NA	2qE2	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	0.214148201	sgMsh2	cell line
chr2	87645748	87645748	A	G	ENSMUST00000217368.1	5	ENSMUSG00000075155	missense	V/A	125	Olfr1133	ENSMUST00000217368.1:c.374T>C	ENSMUSP00000149460.1:p.Val125Ala	H-2-Kb	9	5	7	MAYDHYAAI	MAYDHYVAI	NetMHCpan	7.2	10.8	1.5	434	0.145	17.169	29.47	1.716	22.19	7.22	10.8	7.2	40.65462879	28.19096874	36.74937861	27.11752193	SSC	-0.171428571	-0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.141	434	0	0	NA	2qD	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.603897925	sgMsh2	cell line
chr2	112042552	112042552	A	G	ENSMUST00000213961.2	5	ENSMUSG00000074947	missense	V/A	160	Olfr1312	ENSMUST00000213961.2:c.479T>C	ENSMUSP00000150415.1:p.Val160Ala	H-2-Kb	9	6	6	VQLAFAVNL	VQLAFVVNL	NetMHC	26.8	25.64	0.957	471	0.263	182.136	162.886	0.894	25.64	26.8	29.8	26.9	313.4079437	337.3727491	295.9715726	382.1641989	SSC	2.1	2.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.264	471	0	0	NA	2qE3	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr2	89013584	89013584	A	G	ENSMUST00000217000.1	5	ENSMUSG00000075107	missense	I/T	160	Olfr1216	ENSMUST00000217000.1:c.479T>C	ENSMUSP00000149441.1:p.Ile160Thr	H-2-Kb	9	10	2	VTFTLQLPL	VIFTLQLPL	NetMHCpan	22.1	29.4	1.33	588	0.162	77.388	75.367	0.974	58.24	51.44	29.4	22.1	92.49324152	109.6755952	94.24319478	103.3356082	SSC	1.2	1.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.164	588	0	0	NA	2qE1	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.702406098	sgMsh2	cell line
chr2	89977882	89977882	C	T	ENSMUST00000111512.9	2	ENSMUSG00000042894	missense	L/F	35	Olfr1260	ENSMUST00000111512.9:c.103C>T	ENSMUSP00000107137.1:p.Leu35Phe	H-2-Kb	9	9	3	YSFTLIGNL	YSLTLIGNL	NetMHCpan	30.8	159.7	5.185	286	0.133	163.774	484.819	2.96	207.12	52.6	159.7	30.8	937.7995068	334.2796971	762.5178243	274.9476424	SSC	1.471428571	1.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.136	286	0	0	NA	2qE1	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.582483105	sgMsh2	cell line
chr2	86445613	86445613	T	C	ENSMUST00000217586.2	5	ENSMUSG00000111306	missense	Y/C	123	Olfr1065	ENSMUST00000217586.2:c.368A>G	ENSMUSP00000149248.1:p.Tyr123Cys	H-2-Kb	9	6	6	MSYDRCVAI	MSYDRYVAI	NetMHCpan	74.8	9.3	0.124	392	0.143	107.253	21.056	0.196	15.55	99.36	9.3	74.8	32.36756285	151.7434661	26.56134116	115.1463034	SSC	0.528571429	0.528571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.141	392	0	0	NA	2qD	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.603897925	sgMsh2	cell line
chr2	88896946	88896946	A	G	ENSMUST00000214297.1	5	ENSMUSG00000075114	missense	I/T	217	Olfr1208	ENSMUST00000214297.1:c.650T>C	ENSMUSP00000149695.1:p.Ile217Thr	H-2-Kb	9	7	5	ISYITILSI	ISYIIILSI	NetMHCpan	74.4	161.2	2.167	328	0.177	183.527	264.472	1.441	264.55	114.06	161.2	74.4	347.6241981	252.9938709	264.3930288	253.0754397	SSC	2.071428571	2.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.181	328	0	0	NA	2qE1	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.775216486	sgMsh2	cell line
chr2	89013584	89013584	A	G	ENSMUST00000217000.1	5	ENSMUSG00000075107	missense	I/T	160	Olfr1216	ENSMUST00000217000.1:c.479T>C	ENSMUSP00000149441.1:p.Ile160Thr	H-2-Kb	9	8	4	VQVTFTLQL	VQVIFTLQL	NetMHCpan	78.9	118.6	1.503	588	0.162	216.847	205.068	0.946	149.97	129.43	118.6	78.9	315.5803838	368.2222268	260.1656766	304.2636004	SSC	1.385714286	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.164	588	0	0	NA	2qE1	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.702406098	sgMsh2	cell line
chr2	86160070	86160070	T	C	ENSMUST00000215624.1	NA	ENSMUSG00000075202	missense	Q/R	100	Olfr1042	ENSMUST00000215624.1:c.299A>G	ENSMUSP00000151053.1:p.Gln100Arg	H-2-Kb	9	4	8	TFYACATRL	TFYACATQL	NetMHC	130.05	202.58	1.558	292	0.144	226.469	285.13	1.259	202.58	130.05	232	133.6	430.63567	330.4532291	338.259498	319.3375581	SSC	0.485714286	0.885714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.145	292	0	0	NA	2qD	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.621029781	sgMsh2	cell line
chr2	89296493	89296493	G	T	ENSMUST00000099787.1	NA	ENSMUSG00000075094	missense	P/H	259	Olfr1230	ENSMUST00000099787.1:c.776C>A	ENSMUSP00000097375.1:p.Pro259His	H-2-Kb	9	4	8	CIILYMRHV	CIILYMRPV	NetMHC	155.05	143.07	0.923	234	0.124	464.071	356.564	0.768	143.07	155.05	281.5	349.9	431.6283877	578.2424886	594.6343592	796.6177885	SSC	0.771428571	1.628571429	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.13	234	0	0	NA	2qE1	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.556785321	sgMsh2	cell line
chr2	89977882	89977882	C	T	ENSMUST00000111512.9	2	ENSMUSG00000042894	missense	L/F	35	Olfr1260	ENSMUST00000111512.9:c.103C>T	ENSMUSP00000107137.1:p.Leu35Phe	H-2-Kb	9	5	7	FALIYSFTL	FALIYSLTL	NetMHCpan	140.7	135.8	0.965	286	0.133	203.151	234.631	1.155	217.43	180.82	135.8	140.7	251.8314697	225.4810248	297.3377153	291.9106903	SSC	1.728571429	1.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.136	286	0	0	NA	2qE1	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.582483105	sgMsh2	cell line
chr2	91284247	91284247	A	G	ENSMUST00000102594.10	1	ENSMUSG00000040591	missense	F/L	147	1110051M20Rik	ENSMUST00000102594.10:c.439T>C	ENSMUSP00000099654.4:p.Phe147Leu	H-2-Kb	9	8	4	QIQLYYSEF	QIQFYYSEF	SMM	177.873	191.034	1.074	199	0.136	233.567	248.13	1.062	224.46	181.21	352.1	442.3	191.0337056	177.8729877	271.8003427	285.9235978	SSC	-0.542857143	-0.3	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.139	199	0	0	NA	2qE1	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.595331997	sgMsh2	cell line
chr2	119139420	119139420	GT	G	ENSMUST00000094695.11	1	ENSMUSG00000070730	FS	T/X	387	Rmdn3	ENSMUST00000094695.11:c.1159del	ENSMUSP00000092283.5:p.Thr387ArgfsTer46	H-2-Kb	9	45	0	DGYIFLSAI	NA	NetMHC	187.49	NA	NA	118	0.263	309.473	NA	NA	NA	187.49	NA	212.4	NA	406.5462879	NA	510.7989549	SSC	2.185714286	2.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.258	118	0	0	NA	2qE5	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr2	91284247	91284247	A	G	ENSMUST00000102594.10	1	ENSMUSG00000040591	missense	F/L	147	1110051M20Rik	ENSMUST00000102594.10:c.439T>C	ENSMUSP00000099654.4:p.Phe147Leu	H-2-Kb	9	9	3	IQLYYSEFL	IQFYYSEFL	NetMHCpan	192.4	29.6	0.154	199	0.136	382.31	125.453	0.328	51.33	204.72	29.6	192.4	199.5767748	559.8993973	219.4067579	608.4851727	SSC	0.5	0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.139	199	0	0	NA	2qE1	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.595331997	sgMsh2	cell line
chr2	111292879	111292879	G	T	ENSMUST00000215210.1	5	ENSMUSG00000068647	missense	G/W	204	Olfr1278	ENSMUST00000215210.1:c.610G>T	ENSMUSP00000149635.1:p.Gly204Trp	H-2-Kb	9	10	2	SWFISMGTF	SGFISMGTF	NetMHC	216.47	764.47	3.532	329	0.052	305.699	811.001	2.653	764.47	216.47	284.1	718.6	1074.261472	269.2216614	857.5313379	342.1763584	SSC	1.442857143	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.055	329	0	0	NA	2qE3	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	0.235563021	sgMsh2	cell line
chr2	111780515	111780515	A	G	ENSMUST00000054004.1	NA	ENSMUSG00000044560	missense	N/S	68	Olfr1302	ENSMUST00000054004.1:c.203A>G	ENSMUSP00000061674.1:p.Asn68Ser	H-2-Kb	9	4	8	PMYFLLASL	PMYFLLANL	SMM	61.251	52.615	0.859	462	0.022	153.619	97.161	0.632	124.78	229.03	183.5	321.2	52.61505152	61.25055101	69.54245209	78.20778752	SSC	1.985714286	1.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.02	462	0	0	NA	2qE3	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	0.08565928	sgMsh2	cell line
chr2	88794555	88794555	T	C	ENSMUST00000216213.1	5	ENSMUSG00000059023	missense	Y/H	58	Olfr1201	ENSMUST00000216213.1:c.172T>C	ENSMUSP00000150454.1:p.Tyr58His	H-2-Kb	9	11	1	HFFLFYLSF	YFFLFYLSF	SMM	65.934	42.083	0.638	379	0.169	164.189	97.984	0.597	139.96	233.7	867.9	956.3	42.08332054	65.93408748	56.00799166	94.67820161	SSC	1.985714286	1.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.171	379	0	0	NA	2qE1	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.732386846	sgMsh2	cell line
chr2	127245750	127245750	G	A	ENSMUST00000003759.10	1	ENSMUSG00000003662	missense	R/C	222	Ciao1	ENSMUST00000003759.10:c.664C>T	ENSMUSP00000003759.4:p.Arg222Cys	H-2-Kb	9	6	6	TVRIWCQYL	TVRIWRQYL	NetMHC	255.44	324	1.268	132	0.235	440.473	517.254	1.174	324	255.44	946.6	463.6	511.811453	455.1033161	522.696991	425.8434778	SSC	0.085714286	0.228571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.23	132	0	0	NA	2qF1	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	0.985081722	sgMsh2	cell line
chr2	91284247	91284247	A	G	ENSMUST00000102594.10	1	ENSMUSG00000040591	missense	F/L	147	1110051M20Rik	ENSMUST00000102594.10:c.439T>C	ENSMUSP00000099654.4:p.Phe147Leu	H-2-Kb	9	3	9	FLFAFQIQL	FLFAFQIQF	NetMHCpan	235.9	1129.7	4.789	199	0.136	317.333	742.822	2.341	735.56	268.86	1129.7	235.9	750.0841699	444.7438999	632.7760017	365.8053055	SSC	1.242857143	2.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.139	199	0	0	NA	2qE1	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.595331997	sgMsh2	cell line
chr2	111292879	111292879	G	T	ENSMUST00000215210.1	5	ENSMUSG00000068647	missense	G/W	204	Olfr1278	ENSMUST00000215210.1:c.610G>T	ENSMUSP00000149635.1:p.Gly204Trp	H-2-Kb	9	7	5	TANSWFISM	TANSGFISM	NetMHCpan	186.9	1812.1	9.696	329	0.052	256.021	1385.023	5.41	1707.74	272.65	1812.1	186.9	1042.581466	239.3922023	1062.306894	277.4917016	SSC	0.457142857	0.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.055	329	0	0	NA	2qE3	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	0.235563021	sgMsh2	cell line
chr2	89977882	89977882	C	T	ENSMUST00000111512.9	2	ENSMUSG00000042894	missense	L/F	35	Olfr1260	ENSMUST00000111512.9:c.103C>T	ENSMUSP00000107137.1:p.Leu35Phe	H-2-Kb	9	3	9	VIFALIYSF	VIFALIYSL	SMM	272.339	161.477	0.593	286	0.133	305.185	129.778	0.425	98.08	292.5	57.7	414.6	161.47675	272.3391013	183.7595844	317.8703353	SSC	1.942857143	2.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.136	286	0	0	NA	2qE1	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.582483105	sgMsh2	cell line
chr2	91212313	91212313	T	C	ENSMUST00000028696.4	1	ENSMUSG00000002109	missense	N/D	401	Ddb2	ENSMUST00000028696.4:c.1201A>G	ENSMUSP00000028696.4:p.Asn401Asp	H-2-Kb	9	5	7	TSLNEFDPM	TSLNEFNPM	NetMHC	293.8	93.15	0.317	271	0.162	405.271	170.16	0.42	93.15	293.8	137.5	472.5	202.8196365	433.6206938	206.1816449	376.9207095	SSC	-0.514285714	-0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.156	271	0	0	NA	2qE1	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.668142386	sgMsh2	cell line
chr2	117177703	117177703	A	G	ENSMUST00000028829.12	1	ENSMUSG00000027351	missense	I/M	363	Spred1	ENSMUST00000028829.12:c.1089A>G	ENSMUSP00000028829.6:p.Ile363Met	H-2-Kb	9	10	2	CMYQVSCML	CIYQVSCML	SMM	228.618	511.811	2.239	159	0.27	331.205	563.356	1.701	483.81	295.31	614.9	367.1	511.811453	228.6177783	851.6281337	411.386466	SSC	0.971428571	0.971428571	TRUE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.275	159	0	0	NA	2qE5	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr2	88896946	88896946	A	G	ENSMUST00000214297.1	5	ENSMUSG00000075114	missense	I/T	217	Olfr1208	ENSMUST00000214297.1:c.650T>C	ENSMUSP00000149695.1:p.Ile217Thr	H-2-Kb	9	5	7	LVISYITIL	LVISYIIIL	NetMHCpan	136.8	607.9	4.444	328	0.177	297.255	480.237	1.616	707.28	319.65	607.9	136.8	290.4758291	274.859024	352.5737704	320.8115533	SSC	2.071428571	2.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.181	328	0	0	NA	2qE1	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.775216486	sgMsh2	cell line
chr2	90052240	90052240	A	G	ENSMUST00000216475.1	5	ENSMUSG00000075068	missense	L/P	28	Olfr140	ENSMUST00000216475.1:c.83T>C	ENSMUSP00000150438.1:p.Leu28Pro	H-2-Kb	9	4	8	VQRMLFGPF	VQRMLFGLF	NetMHCpan	254.7	424.1	1.665	151	0.205	325.776	433.72	1.331	567.05	346.41	424.1	254.7	428.6570788	336.5968133	438.783209	314.9560825	SSC	0.685714286	0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.209	151	0	0	NA	2qE1	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.895139478	sgMsh2	cell line
chr2	120986661	120986661	A	G	ENSMUST00000067582.13	1	ENSMUSG00000054484	missense	T/A	233	Tmem62	ENSMUST00000067582.13:c.697A>G	ENSMUSP00000064310.7:p.Thr233Ala	H-2-Kb	9	4	8	IWFGHFTAS	IWFGHFTTS	SMM	41.22	43.763	1.062	141	0.184	221.645	251.959	1.137	420.31	365.62	547.3	671	43.76329367	41.22019102	83.60841685	77.6694089	SSC	0.328571429	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.19	141	0	0	NA	2qE5	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	0.813763162	sgMsh2	cell line
chr2	88794555	88794555	T	C	ENSMUST00000216213.1	5	ENSMUSG00000059023	missense	Y/H	58	Olfr1201	ENSMUST00000216213.1:c.172T>C	ENSMUSP00000150454.1:p.Tyr58His	H-2-Kb	9	7	5	GSPMHFFLF	GSPMYFFLF	SMM	299.302	239.944	0.802	379	0.169	332.253	254.008	0.765	359.52	467.22	211.9	327.8	239.9440583	299.3022626	268.0711022	336.7053368	SSC	1.328571429	1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.171	379	0	0	NA	2qE1	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.732386846	sgMsh2	cell line
chr2	87656102	87656102	A	AT	ENSMUST00000135875.3	5	ENSMUSG00000111747	FS	M/NX	273	Olfr1134	ENSMUST00000135875.3:c.817dup	ENSMUSP00000150837.1:p.Met273AsnfsTer23	H-2-Kb	9	20	0	DSYVKPTYL	NA	SMM	254.748	NA	NA	474	0.188	435.96	NA	NA	NA	486.22	NA	545.4	NA	254.7475407	NA	385.7003207	SSC	-0.114285714	-0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.186	474	0	0	NA	2qD	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.796631306	sgMsh2	cell line
chr2	86347406	86347406	T	C	ENSMUST00000213564.2	5	ENSMUSG00000075189	missense	Y/C	120	Olfr1055	ENSMUST00000213564.2:c.359A>G	ENSMUSP00000149219.1:p.Tyr120Cys	H-2-Kb	9	9	3	MACDRYVAI	MAYDRYVAI	SMMPMBEC	240.021	33.439	0.139	307	0.14	487.773	30.259	0.062	27.08	527.72	14.4	804.5	39.27443988	447.8267173	33.43874735	240.0214196	SSC	0.528571429	0.528571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.142	307	0	0	NA	2qD	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.608180889	sgMsh2	cell line
chr2	119921746	119921746	GT	G	ENSMUST00000110774.7	5	ENSMUSG00000033943	FS	F/X	774	Mga	ENSMUST00000110774.7:c.2322del	ENSMUSP00000106401.1:p.Pro775LeufsTer39	H-2-Kb	9	31	0	ENFKMLLHL	NA	NetMHCpan	313.7	NA	NA	146	0.178	347.684	NA	NA	NA	658.3	NA	313.7	NA	346.02701	NA	349.3413547	SSC	1.285714286	1.285714286	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2	2	0.19	146	0	0	NA	2qE5	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	0.813763162	sgMsh2	cell line
chr2	88794555	88794555	T	C	ENSMUST00000216213.1	5	ENSMUSG00000059023	missense	Y/H	58	Olfr1201	ENSMUST00000216213.1:c.172T>C	ENSMUSP00000150454.1:p.Tyr58His	H-2-Kb	9	9	3	PMHFFLFYL	PMYFFLFYL	SMM	99.566	17.503	0.176	379	0.169	493.774	110.51	0.224	190.1	819.57	486.9	1090.9	17.50289954	99.56575699	30.92074862	167.9770694	SSC	1.642857143	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.171	379	0	0	NA	2qE1	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.732386846	sgMsh2	cell line
chr2	144502992	144502992	T	G	ENSMUST00000081982.11	1	ENSMUSG00000037259	missense	N/H	282	Dzank1	ENSMUST00000081982.11:c.844A>C	ENSMUSP00000080643.5:p.Asn282His	H-2-Db	9	6	6	SMVPMHTPI	SMVPMNTPI	NetMHCpan	144	267.7	1.859	85	0.141	187.569	250.676	1.336	283.68	162.51	267.7	144	221.1159138	212.6277776	233.6522675	228.3336925	SSC	0.5	0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.159	85	0	0	NA	2qG1	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	0.680991278	sgMsh2	cell line
chr2	178354939	178354939	G	A	ENSMUST00000081134.9	1	ENSMUSG00000060445	missense	P/L	1157	Sycp2	ENSMUST00000081134.9:c.3470C>T	ENSMUSP00000079909.3:p.Pro1157Leu	H-2-Db	9	9	3	YSLASGPPF	YSPASGPPF	NetMHC	383.66	992.3	2.586	121	0.182	434.425	1327.158	3.055	992.3	383.66	1149.2	416.4	1590.816182	489.350459	1505.116095	452.4493827	SSC	0.571428571	0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.187	121	0	0	NA	2qH4	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	0.80091427	sgMsh2	cell line
chr2	155385359	155385359	A	C	ENSMUST00000043237.13	1	ENSMUSG00000038375	missense	S/R	7	Trp53inp2	ENSMUST00000043237.13:c.19A>C	ENSMUSP00000037627.7:p.Ser7Arg	H-2-Kb	8	1	7	MFQRFTRL	MFQRFTSL	SMM	23.001	40.063	1.742	166	0.127	28.079	48.875	1.741	46.15	26.46	51.6	43.3	40.06268017	23.00064421	53.42444264	29.69887511	SSC	-0.542857143	-0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.139	166	0	0	NA	2qH1	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	0.595331997	sgMsh2	cell line
chr2	180193764	180193764	CG	C	ENSMUST00000015791.5	1	ENSMUSG00000015647	FS	P/X	1265	Lama5	ENSMUST00000015791.5:c.3795del	ENSMUSP00000015791.5:p.Glu1266ArgfsTer101	H-2-Kb	8	64	0	SLWRYSLM	NA	NetMHCpan	30.8	NA	NA	51	0.373	85.705	NA	NA	NA	40.57	NA	30.8	NA	173.6760767	NA	130.8398387	SSC	0.285714286	0.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.367	51	0	0	NA	2qH4	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	2	1	sgMsh2	cell line
chr3	88449705	88449705	T	C	ENSMUST00000029700.11	1	ENSMUSG00000028064	missense	I/V	320	Sema4a	ENSMUST00000029700.11:c.958A>G	ENSMUSP00000029700.5:p.Ile320Val	H-2-Kb	8	8	4	VSRVYAVF	VSRIYAVF	NetMHC	46.39	61.42	1.324	70	0.257	77.618	86.384	1.113	61.42	46.39	74.2	72.3	105.1332282	96.76983488	98.56892043	82.93541077	SSC	0.914285714	1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.243	70	0	0	NA	3qF1	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr3	96699439	96699439	G	C	ENSMUST00000064900.15	1	ENSMUSG00000028101	missense	R/P	15	Pias3	ENSMUST00000064900.15:c.44G>C	ENSMUSP00000069259.9:p.Arg15Pro	H-2-Kb	8	8	4	MSFPVSEL	MSFRVSEL	NetMHCpan	65.4	23.7	0.362	36	0.194	90.805	32.02	0.353	18.83	87.91	23.7	65.4	40.3403814	93.70008827	45.7867692	129.3421274	SSC	0.585714286	0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.222	36	0	0	NA	3qF2.1	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	0.95081801	sgMsh2	cell line
chr2	132240580	132240580	A	G	ENSMUST00000110164.7	2	ENSMUSG00000027341	missense	F/S	90	Tmem230	ENSMUST00000110164.7:c.269T>C	ENSMUSP00000105793.1:p.Phe90Ser	H-2-Kb	8	11	1	SLPGFYHL	FLPGFYHL	NetMHCpan	98.2	522.1	5.317	145	0.234	164.475	459.527	2.794	694.44	114.79	522.1	98.2	387.9180607	214.1608096	396.9538331	229.4774419	SSC	0.557142857	0.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.246	145	0	0	NA	2qF2	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr3	28794409	28794409	G	A	ENSMUST00000060500.8	1	ENSMUSG00000050192	missense	C/Y	139	Eif5a2	ENSMUST00000060500.8:c.416G>A	ENSMUSP00000050289.7:p.Cys139Tyr	H-2-Kb	8	7	5	VSVMYAMS	VSVMCAMS	SMM	72.734	814.217	11.194	190	0.247	100.979	2855.808	28.281	5114.17	120.91	4897.4	389.8	814.2166892	72.73442335	792.027024	81.04757034	SSC	0.985714286	1.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.238	190	0	0	NA	3qA3	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr3	62602681	62602681	C	T	ENSMUST00000058535.5	1	ENSMUSG00000043441	missense	G/R	338	Gpr149	ENSMUST00000058535.5:c.1012G>A	ENSMUSP00000060893.5:p.Gly338Arg	H-2-Kb	8	8	4	HVVRFQSL	HVVGFQSL	NetMHCpan	94.1	530	5.632	79	0.165	176.107	900.3	5.112	1288.64	123.79	530	94.1	999.401507	291.5680954	801.1982647	228.4230889	SSC	0.885714286	0.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.168	79	0	0	NA	3qE1	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	0.719537954	sgMsh2	cell line
chr3	87913145	87913145	CT	C	ENSMUST00000005017.14	1	ENSMUSG00000004897	FS	F/X	48	Hdgf	ENSMUST00000005017.14:c.150del	ENSMUSP00000005017.8:p.Phe50LeufsTer91	H-2-Kb	8	9	5	QVFFLGPM	QVFFFGTH	NetMHCpan	133.5	6279.1	47.034	135	0.333	329.335	4621.078	14.032	8076.13	242.05	6279.1	133.5	2963.056959	416.6198901	1332.723329	491.7450535	SSC	1.928571429	1.928571429	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.326	135	0	0	NA	3qF1	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr2	128685915	128685915	T	C	ENSMUST00000014499.9	1	ENSMUSG00000014355	missense	Q/R	41	Anapc1	ENSMUST00000014499.9:c.122A>G	ENSMUSP00000014499.3:p.Gln41Arg	H-2-Kb	8	5	7	LNLQLRRL	LNLQLRQL	SMM	216.641	373.887	1.726	167	0.323	275.027	456.143	1.659	735.41	356.54	538.4	330.4	373.8866857	216.6406749	356.2377999	219.6544469	SSC	-0.657142857	-0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.323	167	0	0	NA	2qF1	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr3	87913145	87913145	CT	C	ENSMUST00000005017.14	1	ENSMUSG00000004897	FS	F/X	48	Hdgf	ENSMUST00000005017.14:c.150del	ENSMUSP00000005017.8:p.Phe50LeufsTer91	H-2-Kb	8	54	0	TTLQSRPL	NA	SMM	174.478	NA	NA	135	0.333	286.989	NA	NA	NA	375.03	NA	851.1	NA	174.4777291	NA	198.9481935	SSC	-0.5	-0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.326	135	0	0	NA	3qF1	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr2	180193764	180193764	CG	C	ENSMUST00000015791.5	1	ENSMUSG00000015647	FS	P/X	1265	Lama5	ENSMUST00000015791.5:c.3795del	ENSMUSP00000015791.5:p.Glu1266ArgfsTer101	H-2-Kb	8	85	0	VLMVMAAV	NA	SMMPMBEC	352.16	NA	NA	51	0.373	466.785	NA	NA	NA	436.13	NA	574.3	NA	497.4391928	NA	352.1599796	SSC	2.8	2.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.367	51	0	0	NA	2qH4	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	2	1	sgMsh2	cell line
chr3	14481277	14481277	A	G	ENSMUST00000037321.7	1	ENSMUSG00000039710	missense	K/E	161	Slc7a12	ENSMUST00000037321.7:c.481A>G	ENSMUSP00000038574.7:p.Lys161Glu	H-2-Kb	8	7	5	SSFIELSV	SSFIKLSV	NetMHCpan	262.5	124.8	0.475	171	0.24	331.596	395.589	1.193	273.88	480.71	124.8	262.5	517.2970479	357.8821189	541.6765067	305.3092764	SSC	1.457142857	1.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.238	171	0	0	NA	3qA1	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr3	68927791	68927791	A	G	ENSMUST00000107812.7	5	ENSMUSG00000027778	missense	I/T	439	Ift80	ENSMUST00000107812.7:c.1316T>C	ENSMUSP00000103442.1:p.Ile439Thr	H-2-Kb	8	11	1	TIFLFEAS	IIFLFEAS	SMM	114.483	40.902	0.357	87	0.264	496.639	214.122	0.431	378.83	1363.31	368.3	827.8	40.90157201	114.482736	59.94321055	165.4778997	SSC	1.628571429	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.244	87	0	0	NA	3qE1	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr3	19144391	19144391	CA	C	ENSMUST00000029125.9	1	ENSMUSG00000027599	FS	L/X	135	Armc1	ENSMUST00000029125.9:c.404del	ENSMUSP00000029125.8:p.Leu135TrpfsTer11	H-2-Kb	8	6	6	KAQFFWEL	KAQFFLGT	NetMHCpan	149.3	1986.6	13.306	136	0.265	459.056	3918.761	8.537	6736.57	1628.41	1986.6	149.3	4233.894187	392.4099402	3603.628392	525.7024488	SSC	0.471428571	0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.264	136	0	0	NA	3qA2	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr3	14537323	14537323	A	G	ENSMUST00000169079.7	1	ENSMUSG00000027550	missense	T/A	159	Lrrcc1	ENSMUST00000169079.7:c.475A>G	ENSMUSP00000126560.1:p.Thr159Ala	H-2-Kb	9	5	7	VGLHFLANL	VGLHFLTNL	NetMHC	4.15	7.44	1.793	83	0.325	41.016	55.134	1.344	7.44	4.15	6.9	5.1	102.8276712	76.93252737	105.7426037	77.6694089	SSC	1.328571429	1.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.333	83	0	0	NA	3qA1	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	2	1	sgMsh2	cell line
chr2	132240580	132240580	A	G	ENSMUST00000110164.7	2	ENSMUSG00000027341	missense	F/S	90	Tmem230	ENSMUST00000110164.7:c.269T>C	ENSMUSP00000105793.1:p.Phe90Ser	H-2-Kb	9	10	2	VSLPGFYHL	VFLPGFYHL	NetMHC	22.77	187.13	8.218	145	0.234	93.901	246.108	2.621	187.13	22.77	200.4	30	291.8166046	157.8010905	341.3893746	169.9221522	SSC	0.557142857	0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.246	145	0	0	NA	2qF2	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr2	151706653	151706653	T	C	ENSMUST00000060196.2	1	ENSMUSG00000044364	missense	V/A	100	Tmem74b	ENSMUST00000060196.2:c.299T>C	ENSMUSP00000060017.2:p.Val100Ala	H-2-Kb	9	6	6	VDYGFASAL	VDYGFVSAL	NetMHC	61.82	58.19	0.941	63	0.397	78.38	73.491	0.938	58.19	61.82	68.8	72.6	78.18258038	84.16082809	79.66177885	102.8608242	SSC	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.401	63	0	0	NA	2qG3	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	2	1	sgMsh2	cell line
chr3	97562644	97562644	TA	T	ENSMUST00000029730.4	1	ENSMUSG00000028089	FS	F/X	855	Chd1l	ENSMUST00000029730.4:c.2565del	ENSMUSP00000029730.4:p.Phe855LeufsTer67	H-2-Kb	9	31	0	LTYTTFPEV	NA	NetMHC	74.75	NA	NA	285	0.225	154.974	NA	NA	NA	74.75	NA	100	NA	209.947158	NA	249.6031145	SSC	-0.114285714	0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.235	285	0	0	NA	3qF2.1	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr3	62602681	62602681	C	T	ENSMUST00000058535.5	1	ENSMUSG00000043441	missense	G/R	338	Gpr149	ENSMUST00000058535.5:c.1012G>A	ENSMUSP00000060893.5:p.Gly338Arg	H-2-Kb	9	7	5	KHVVRFQSL	KHVVGFQSL	NetMHC	123.24	1672.99	13.575	79	0.165	308.967	1765.932	5.716	1672.99	123.24	1270.9	267.9	1884.126249	350.0338139	1858.874201	358.3026333	SSC	0.885714286	0.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.168	79	0	0	NA	3qE1	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	0.719537954	sgMsh2	cell line
chr2	180472194	180472194	C	A	ENSMUST00000038225.7	1	ENSMUSG00000038963	missense	L/I	475	Slco4a1	ENSMUST00000038225.7:c.1423C>A	ENSMUSP00000045023.7:p.Leu475Ile	H-2-Kb	9	9	3	VFIMHCPNV	VFLMHCPNV	NetMHC	154.14	154.16	1	148	0.304	264.235	279.514	1.058	154.16	154.14	321.3	266.5	288.4762076	287.1507798	270.5515336	261.9690589	SSC	0.685714286	1.585714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.31	148	0	0	NA	2qH4	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr3	88652659	88652659	T	C	ENSMUST00000063119.4	NA	ENSMUSG00000049741	missense	T/A	162	Rxfp4	ENSMUST00000063119.4:c.484A>G	ENSMUSP00000058732.4:p.Thr162Ala	H-2-Kb	9	4	8	VFWARVVAL	VFWARVVTL	NetMHC	154.36	184.67	1.196	100	0.23	172.166	183.582	1.066	184.67	154.36	154.2	174.8	238.8416155	224.9624328	182.4945923	169.531342	SSC	1.485714286	1.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.24	100	0	0	NA	3qF1	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr3	14481277	14481277	A	G	ENSMUST00000037321.7	1	ENSMUSG00000039710	missense	K/E	161	Slc7a12	ENSMUST00000037321.7:c.481A>G	ENSMUSP00000038574.7:p.Lys161Glu	H-2-Kb	9	7	5	SSFIELSVL	SSFIKLSVL	NetMHCpan	88.9	31.7	0.357	171	0.24	169.262	50.82	0.3	40.51	167.48	31.7	88.9	65.63114787	171.044849	61.12938126	181.6561058	SSC	2.114285714	2.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.238	171	0	0	NA	3qA1	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr3	68927791	68927791	A	G	ENSMUST00000107812.7	5	ENSMUSG00000027778	missense	I/T	439	Ift80	ENSMUST00000107812.7:c.1316T>C	ENSMUSP00000103442.1:p.Ile439Thr	H-2-Kb	9	11	1	TIFLFEAST	IIFLFEAST	NetMHC	181.4	78.59	0.433	87	0.264	236.705	140.504	0.594	78.59	181.4	219.4	418.7	139.6722084	239.3922023	141.3350901	234.0183969	SSC	0.885714286	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.244	87	0	0	NA	3qE1	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr2	180193764	180193764	CG	C	ENSMUST00000015791.5	1	ENSMUSG00000015647	FS	P/X	1265	Lama5	ENSMUST00000015791.5:c.3795del	ENSMUSP00000015791.5:p.Glu1266ArgfsTer101	H-2-Kb	9	63	0	PSLWRYSLM	NA	SMM	60.41	NA	NA	51	0.373	148.143	NA	NA	NA	224.96	NA	455.1	NA	60.41016195	NA	71.32634994	SSC	0.285714286	0.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.367	51	0	0	NA	2qH4	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	2	1	sgMsh2	cell line
chr2	144502992	144502992	T	G	ENSMUST00000081982.11	1	ENSMUSG00000037259	missense	N/H	282	Dzank1	ENSMUST00000081982.11:c.844A>C	ENSMUSP00000080643.5:p.Asn282His	H-2-Kb	9	6	6	SMVPMHTPI	SMVPMNTPI	NetMHCpan	204.7	977.9	4.777	85	0.141	291.792	890.02	3.05	1246.33	226.22	977.9	204.7	755.2835049	357.3633412	802.1396792	389.2691619	SSC	0.5	0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.159	85	0	0	NA	2qG1	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	0.680991278	sgMsh2	cell line
chr3	87913145	87913145	CT	C	ENSMUST00000005017.14	1	ENSMUSG00000004897	FS	F/X	48	Hdgf	ENSMUST00000005017.14:c.150del	ENSMUSP00000005017.8:p.Phe50LeufsTer91	H-2-Kb	9	8	6	YQVFFLGPM	YQVFFFGTH	NetMHCpan	208	10598.6	50.955	135	0.333	455.442	6575.522	14.438	9408.99	400.25	10598.6	208	3742.053566	510.6343193	3063.726549	525.1096507	SSC	1.928571429	1.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.326	135	0	0	NA	3qF1	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr3	158318471	158318471	G	T	ENSMUST00000200137.4	1	ENSMUSG00000028176	missense	L/I	96	Lrrc7	ENSMUST00000200137.4:c.286C>A	ENSMUSP00000142498.1:p.Leu96Ile	H-2-Db	9	9	3	ASIVNLKEL	ASLVNLKEL	NetMHCpan	18.7	28.1	1.503	141	0.163	27.357	35.126	1.284	39.8	27.51	28.1	18.7	30.45229302	27.20320034	40.69771255	35.12125287	SSC	0.771428571	0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.172	141	0	0	NA	3qH4	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	0.73666981	sgMsh2	cell line
chr4	75956378	75956378	C	A	ENSMUST00000173376.7	1	ENSMUSG00000028399	missense	R/M	1281	Ptprd	ENSMUST00000173376.7:c.3842G>T	ENSMUSP00000133468.1:p.Arg1281Met	H-2-Db	9	9	3	STMVCLQPI	STRVCLQPI	NetMHCpan	182.5	5235.2	28.686	90	0.344	379.307	5485.672	14.462	10034.86	283.75	5235.2	182.5	5736.143402	580.2564812	4961.00883	474.8648239	SSC	1.685714286	1.685714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.362	90	0	0	NA	4qC3	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr4	53543568	53543568	T	G	ENSMUST00000102911.9	1	ENSMUSG00000028412	missense	F/V	371	Slc44a1	ENSMUST00000102911.9:c.1111T>G	ENSMUSP00000099975.3:p.Phe371Val	H-2-Db	9	3	9	SAVQNEQGV	SAVQNEQGF	NetMHCpan	285	1199.9	4.21	56	0.339	439.175	1124.262	2.56	1656.13	315.27	1199.9	285	1048.624499	678.6096014	852.2558677	563.0798678	SSC	-0.857142857	-0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.355	56	0	0	NA	4qB2	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr4	53040735	53040735	A	C	ENSMUST00000030010.3	1	ENSMUSG00000015243	missense	F/V	1971	Abca1	ENSMUST00000030010.3:c.5911T>G	ENSMUSP00000030010.3:p.Phe1971Val	H-2-Db	9	9	3	DAVLNKNSI	DAFLNKNSI	SMM	231.004	245.256	1.062	67	0.239	434.531	573.778	1.32	1530.77	624.96	902.3	1359.8	245.2562028	231.0042659	242.4208669	244.1012481	SSC	0.114285714	0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.242	67	0	0	NA	4qB2	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr4	113483888	113483888	A	G	ENSMUST00000169631.7	1	ENSMUSG00000078598	missense	Y/H	1419	Skint5	ENSMUST00000169631.7:c.4255T>C	ENSMUSP00000132470.1:p.Tyr1419His	H-2-Kb	8	5	7	ATILYMHL	ATILYMYL	NetMHC	4.93	6.7	1.359	117	0.453	14.773	17.882	1.21	6.7	4.93	15.5	9	20.26469166	21.21973715	21.12224132	20.5466016	SSC	1.257142857	1.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.461	117	0	0	NA	4qD1	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	2	1	sgMsh2	cell line
chr4	46166741	46166741	A	G	ENSMUST00000030014.8	1	ENSMUSG00000028330	missense	E/G	535	Ncbp1	ENSMUST00000030014.8:c.1604A>G	ENSMUSP00000030014.8:p.Glu535Gly	H-2-Kb	8	11	1	GGFRFNPL	EGFRFNPL	NetMHC	9.9	18.78	1.897	62	0.081	15.648	32.142	2.054	18.78	9.9	41.7	14.9	35.46010359	23.75417764	28.82305431	16.39607892	SSC	-0.085714286	-0.085714286	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;Vardict	3	0.098	62	0	0	NA	4qB1	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	0.419730473	sgMsh2	cell line
chr3	105005546	105005546	C	A	ENSMUST00000077548.11	1	ENSMUSG00000062127	missense	A/S	341	Cttnbp2nl	ENSMUST00000077548.11:c.1021G>T	ENSMUSP00000076751.5:p.Ala341Ser	H-2-Kb	8	11	1	SAYSYAKA	AAYSYAKA	NetMHC	11.09	24.13	2.176	99	0.313	44.921	75.024	1.67	24.13	11.09	53.5	32.2	129.0446488	68.82401428	96.54727043	57.64212727	SSC	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.313	99	0	0	NA	3qF2.2	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr4	115496100	115496100	TA	T	ENSMUST00000030487.2	1	ENSMUSG00000028715	FS	L/X	5	Cyp4a14	ENSMUST00000030487.2:c.14del	ENSMUSP00000030487.2:p.Leu5TyrfsTer60	H-2-Kb	8	1	5	MGFFYLAL	MGFFLFSP	NetMHCpan	5.6	744.4	132.929	53	0.302	8.822	1514.642	171.684	3458.5	11.16	744.4	5.6	1408.445349	8.011982647	1620.839455	9.632521787	SSC	1.9	1.9	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.3019	53	0	0	NA	4qD1	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr4	115496100	115496100	TA	T	ENSMUST00000030487.2	1	ENSMUSG00000028715	FS	L/X	5	Cyp4a14	ENSMUST00000030487.2:c.14del	ENSMUSP00000030487.2:p.Leu5TyrfsTer60	H-2-Kb	8	48	0	SSISHACL	NA	NetMHC	26.78	NA	NA	53	0.302	42.587	NA	NA	NA	26.78	NA	86	NA	42.04748265	NA	43.12608157	SSC	1.114285714	1.114285714	FALSE	FALSE	FALSE	1	FALSE	0	Strelka2;Vardict	2	0.3019	53	0	0	NA	4qD1	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr3	108624645	108624645	A	G	ENSMUST00000051145.14	1	ENSMUSG00000040389	missense	Q/R	449	Wdr47	ENSMUST00000051145.14:c.1346A>G	ENSMUSP00000057482.8:p.Gln449Arg	H-2-Kb	8	11	1	RMYQQMLL	QMYQQMLL	NetMHC	67.4	94.29	1.399	68	0.25	121.812	213.148	1.75	94.29	67.4	182.1	93.4	244.1968177	150.2242346	524.4933667	251.0383085	SSC	0.442857143	0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.257	68	0	0	NA	3qF3	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr4	115014223	115014223	A	G	ENSMUST00000030490.12	1	ENSMUSG00000028718	missense	N/S	330	Stil	ENSMUST00000030490.12:c.989A>G	ENSMUSP00000030490.6:p.Asn330Ser	H-2-Kb	8	6	6	TLHLFSNV	TLHLFNNV	NetMHCpan	103.7	224.2	2.162	103	0.194	136.53	304.681	2.232	334.06	109.1	224.2	103.7	326.3923717	201.7158386	282.9697428	163.9607892	SSC	1.014285714	1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.214	103	0	0	NA	4qD1	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	0.916554298	sgMsh2	cell line
chr4	12053539	12053539	T	C	ENSMUST00000050686.9	1	ENSMUSG00000049488	missense	T/A	670	Tmem67	ENSMUST00000050686.9:c.2008A>G	ENSMUSP00000052644.3:p.Thr670Ala	H-2-Kb	8	6	6	VSIWRAYF	VSIWRTYF	NetMHCpan	95.6	211.9	2.217	160	0.381	324.663	983.495	3.029	485.36	141.47	211.9	95.6	1921.940772	672.5738845	1481.630809	507.8553127	SSC	0.228571429	0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.384	160	0	0	NA	4qA1	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr4	113483888	113483888	A	G	ENSMUST00000169631.7	1	ENSMUSG00000078598	missense	Y/H	1419	Skint5	ENSMUST00000169631.7:c.4255T>C	ENSMUSP00000132470.1:p.Tyr1419His	H-2-Kb	8	7	5	ILYMHLQI	ILYMYLQI	NetMHCpan	66.5	26.6	0.4	117	0.453	185.475	37.904	0.204	32.88	185.28	26.6	66.5	70.91530907	274.6249558	42.92793522	185.6692572	SSC	0.857142857	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.461	117	0	0	NA	4qD1	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	2	1	sgMsh2	cell line
chr4	74170660	74170660	A	G	ENSMUST00000084474.5	1	ENSMUSG00000049122	missense	S/G	365	Frmd3	ENSMUST00000084474.5:c.1093A>G	ENSMUSP00000081514.5:p.Ser365Gly	H-2-Kb	8	8	4	QSRGFHSL	QSRSFHSL	SMM	150.224	65.274	0.435	45	0.289	214.23	81.245	0.379	42.93	203.17	173.7	465.2	65.27396586	150.2242346	97.21650414	225.2890066	SSC	-0.442857143	-0.442857143	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.289	45	0	0	NA	4qC3	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr3	103928888	103928888	T	C	ENSMUST00000068879.10	1	ENSMUSG00000044098	missense	I/T	414	Rsbn1	ENSMUST00000068879.10:c.1241T>C	ENSMUSP00000069246.4:p.Ile414Thr	H-2-Kb	8	5	7	AYYALATV	AYYALAIV	NetMHC	253.92	755.72	2.976	165	0.212	354.427	877.561	2.476	755.72	253.92	648.4	272.6	999.401507	436.2545806	1204.314735	461.0414792	SSC	1.185714286	1.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.219	165	0	0	NA	3qF2.2	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	0.937969118	sgMsh2	cell line
chr3	153509458	153509458	T	C	ENSMUST00000200397.4	1	ENSMUSG00000052544	missense	I/V	20	St6galnac3	ENSMUST00000200397.4:c.58A>G	ENSMUSP00000143747.1:p.Ile20Val	H-2-Kb	8	11	1	VLLLAMRL	ILLLAMRL	SMM	221.177	235.907	1.067	65	0.2	239.723	253.353	1.057	302.11	262.11	270.8	238.6	235.9065504	221.1770188	234.8226582	240.8463117	SSC	2.057142857	2.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.215	65	0	0	NA	3qH3	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	0.920837262	sgMsh2	cell line
chr4	111656401	111656401	C	T	ENSMUST00000097920.8	1	ENSMUSG00000061298	missense	A/V	448	Agbl4	ENSMUST00000097920.8:c.1343C>T	ENSMUSP00000095533.2:p.Ala448Val	H-2-Kb	8	10	2	IVVPMPRL	IAVPMPRL	NetMHCpan	161.8	181.2	1.12	136	0.029	297.509	284.373	0.956	254.16	275.32	181.2	161.8	314.5864409	319.6980594	348.9313575	322.6561891	SSC	0.914285714	1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.038	136	0	0	NA	4qD1	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	0.162752632	sgMsh2	cell line
chr3	116891951	116891951	T	C	ENSMUST00000195905.4	5	ENSMUSG00000033386	missense	Y/H	324	Frrs1	ENSMUST00000195905.4:c.970T>C	ENSMUSP00000143255.1:p.Tyr324His	H-2-Kb	8	10	2	SHYIFFAE	SYYIFFAE	SMM	62.193	100.171	1.611	136	0.235	189.236	314.034	1.659	494.18	286.27	516.8	344.9	100.1705365	62.19278428	133.88749	92.20192747	SSC	0.557142857	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.235	136	0	0	NA	3qG1	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr4	20064005	20064005	A	C	ENSMUST00000098242.3	1	ENSMUSG00000073987	missense	K/T	234	Ggh	ENSMUST00000098242.3:c.701A>C	ENSMUSP00000095843.3:p.Lys234Thr	H-2-Kb	8	10	2	FTYPVYAV	FKYPVYAV	SMM	232.135	1272.741	5.483	94	0.245	311.21	3820.621	12.277	5414.14	319.82	5562.8	302.6	1272.740898	232.1346655	2227.101447	387.9180607	SSC	0.757142857	0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.239	94	0	0	NA	4qA3	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr3	153509458	153509458	T	C	ENSMUST00000200397.4	1	ENSMUSG00000052544	missense	I/V	20	St6galnac3	ENSMUST00000200397.4:c.58A>G	ENSMUSP00000143747.1:p.Ile20Val	H-2-Kb	8	4	8	VSFIALCV	VSFIALCI	SMM	205.94	373.887	1.816	65	0.2	246.911	373.028	1.511	640.38	398.71	236.9	259	373.8866857	205.9396641	372.1688324	234.8226582	SSC	2.685714286	2.685714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.215	65	0	0	NA	3qH3	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	0.920837262	sgMsh2	cell line
chr4	12053539	12053539	T	C	ENSMUST00000050686.9	1	ENSMUSG00000049488	missense	T/A	670	Tmem67	ENSMUST00000050686.9:c.2008A>G	ENSMUSP00000052644.3:p.Thr670Ala	H-2-Kb	8	7	5	SIWRAYFV	SIWRTYFV	SMM	348.129	511.376	1.469	160	0.381	477.147	499.306	1.046	462.02	549.96	782.4	686	511.3755976	348.1288376	487.2367077	404.3337559	SSC	0.942857143	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.384	160	0	0	NA	4qA1	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr4	113483888	113483888	A	G	ENSMUST00000169631.7	1	ENSMUSG00000078598	missense	Y/H	1419	Skint5	ENSMUST00000169631.7:c.4255T>C	ENSMUSP00000132470.1:p.Tyr1419His	H-2-Kb	9	4	8	SATILYMHL	SATILYMYL	NetMHC	30.45	50.44	1.656	117	0.453	128.412	152.174	1.185	50.44	30.45	94.4	55.4	209.947158	201.4234359	235.640535	215.4021332	SSC	1.257142857	1.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.461	117	0	0	NA	4qD1	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	2	1	sgMsh2	cell line
chr3	103928888	103928888	T	C	ENSMUST00000068879.10	1	ENSMUSG00000044098	missense	I/T	414	Rsbn1	ENSMUST00000068879.10:c.1241T>C	ENSMUSP00000069246.4:p.Ile414Thr	H-2-Kb	9	4	8	AAYYALATV	AAYYALAIV	NetMHC	58.87	162.1	2.754	165	0.212	163.252	247.691	1.517	162.1	58.87	234.7	93.1	260.6813732	233.4049166	369.1900603	312.7879401	SSC	1.185714286	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.219	165	0	0	NA	3qF2.2	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	0.937969118	sgMsh2	cell line
chr4	103143160	103143160	A	C	ENSMUST00000097945.9	1	ENSMUSG00000028522	missense	Q/H	233	Mier1	ENSMUST00000097945.9:c.699A>C	ENSMUSP00000095558.3:p.Gln233His	H-2-Kb	9	6	6	VGSMFHAEI	VGSMFQAEI	NetMHCpan	56.9	188.7	3.316	77	0.312	337.801	674.731	1.997	301.73	83.7	188.7	56.9	1210.904798	785.4345477	1047.731497	591.9022625	SSC	0.5	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.305	77	0	0	NA	4qC6	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr3	153509458	153509458	T	C	ENSMUST00000200397.4	1	ENSMUSG00000052544	missense	I/V	20	St6galnac3	ENSMUST00000200397.4:c.58A>G	ENSMUSP00000143747.1:p.Ile20Val	H-2-Kb	9	4	8	VSFIALCVL	VSFIALCIL	NetMHCpan	76.8	80.4	1.047	65	0.2	115.737	102.269	0.884	98.83	105.84	80.4	76.8	105.7085218	125.6348137	138.4363053	134.9739632	SSC	3.342857143	3.342857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.215	65	0	0	NA	3qH3	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	0.920837262	sgMsh2	cell line
chr4	118734571	118734571	A	G	ENSMUST00000217522.2	3	ENSMUSG00000070820	missense	E/G	14	Olfr1339	ENSMUST00000217522.2:c.41A>G	ENSMUSP00000148988.1:p.Glu14Gly	H-2-Kb	9	7	5	SSVSGFILL	SSVSEFILL	NetMHC	114.79	78.01	0.68	101	0.297	211.811	154.118	0.728	78.01	114.79	132.4	180.9	175.8368925	242.7224795	277.4917016	308.4963287	SSC	2.557142857	2.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.32	101	0	0	NA	4qD2.1	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr3	116891951	116891951	T	C	ENSMUST00000195905.4	5	ENSMUSG00000033386	missense	Y/H	324	Frrs1	ENSMUST00000195905.4:c.970T>C	ENSMUSP00000143255.1:p.Tyr324His	H-2-Kb	9	10	2	SHYIFFAEG	SYYIFFAEG	NetMHC	123.41	230.42	1.867	136	0.235	130.94	148.813	1.137	230.42	123.41	199.2	193	98.4260372	136.4928808	94.8964574	125.3862749	SSC	0.957142857	0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.235	136	0	0	NA	3qG1	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr4	12053539	12053539	T	C	ENSMUST00000050686.9	1	ENSMUSG00000049488	missense	T/A	670	Tmem67	ENSMUST00000050686.9:c.2008A>G	ENSMUSP00000052644.3:p.Thr670Ala	H-2-Kb	9	6	6	VSIWRAYFV	VSIWRTYFV	NetMHC	175.82	192.24	1.093	160	0.381	276.18	242.071	0.876	192.24	175.82	214.3	199.9	269.8422814	352.4601324	280.0593007	390.1665199	SSC	0.942857143	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.384	160	0	0	NA	4qA1	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr4	103143160	103143160	A	C	ENSMUST00000097945.9	1	ENSMUSG00000028522	missense	Q/H	233	Mier1	ENSMUST00000097945.9:c.699A>C	ENSMUSP00000095558.3:p.Gln233His	H-2-Kb	9	8	4	SMFHAEIPV	SMFQAEIPV	SMM	181.18	218.328	1.205	77	0.312	241.915	277.522	1.147	236.44	216.99	363	335.2	218.3282833	181.1798935	318.6031021	266.8394274	SSC	0.714285714	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.305	77	0	0	NA	4qC6	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr4	87840915	87840915	CT	C	ENSMUST00000078090.11	1	ENSMUSG00000028496	FS	R/X	299	Mllt3	ENSMUST00000078090.11:c.895del	ENSMUSP00000077232.5:p.Arg299GlyfsTer19	H-2-Kb	9	14	0	VARRLYLKV	NA	NetMHCpan	193.3	NA	NA	93	0.097	273.128	NA	NA	NA	289.66	NA	193.3	NA	291.1454451	NA	256.5960697	SSC	-0.342857143	0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.106	93	0	0	NA	4qC4	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	0.453994185	sgMsh2	cell line
chr4	64007763	64007763	A	G	ENSMUST00000107377.9	1	ENSMUSG00000028364	missense	Y/H	927	Tnc	ENSMUST00000107377.9:c.2779T>C	ENSMUSP00000103000.3:p.Tyr927His	H-2-Kb	9	6	6	SYRIKHAPI	SYRIKYAPI	NetMHC	338.79	85	0.251	54	0.315	476.479	142.207	0.298	85	338.79	565.7	1778.7	146.9298381	514.1738673	137.4833165	438.783209	SSC	-0.342857143	-0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.322	54	0	0	NA	4qC1	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr4	113004506	113004506	A	G	ENSMUST00000138966.8	1	ENSMUSG00000087194	missense	M/T	618	Skint6	ENSMUST00000138966.8:c.1853T>C	ENSMUSP00000121870.2:p.Met618Thr	H-2-Kb	9	10	2	STLLKKIGL	SMLLKKIGL	NetMHC	344.11	192.99	0.561	192	0.292	450.184	204.444	0.454	192.99	344.11	587.9	803.6	154.5645878	410.3080144	215.8986864	490.0608399	SSC	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.299	192	0	0	NA	4qD1	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr4	32725960	32725960	CA	C	ENSMUST00000178134.1	5	ENSMUSG00000058006	FS	A/X	2626	Mdn1	ENSMUST00000178134.1:c.7880del	ENSMUSP00000136222.1:p.Asn2627ThrfsTer27	H-2-Kb	9	10	3	VATRHLFIL	NA	SMM	230.202	NA	NA	102	0.333	308.995	NA	NA	NA	418.19	NA	322.7	NA	230.202481	NA	295.2908568	SSC	0.928571429	0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.31	102	0	0	NA	4qA5	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr4	46007511	46007511	A	C	ENSMUST00000107777.8	1	ENSMUSG00000035517	missense	E/A	521	Tdrd7	ENSMUST00000107777.8:c.1562A>C	ENSMUSP00000103406.2:p.Glu521Ala	H-2-Kb	9	11	1	AFYSKNPRV	EFYSKNPRV	SMM	292.489	1023.552	3.499	63	0.286	429.847	2150.851	5.004	3217.15	519.09	7027.5	1153.4	1023.552209	292.4893114	1084.551052	340.6042008	SSC	-1.628571429	-0.928571429	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.274	63	0	0	NA	4qB1	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr4	148549862	148549862	G	A	ENSMUST00000103221.9	1	ENSMUSG00000028991	missense	M/I	2387	Mtor	ENSMUST00000103221.9:c.7161G>A	ENSMUSP00000099510.3:p.Met2387Ile	H-2-Db	9	5	7	RMLTNAIEV	RMLTNAMEV	NetMHC	13.14	17.39	1.323	88	0.034	58.361	62.448	1.07	17.39	13.14	49.8	45.5	75.09655249	71.22295691	88.83211452	83.47760874	SSC	0.942857143	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.046	88	0	0	NA	4qE2	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	0.197016344	sgMsh2	cell line
chr5	24477100	24477100	T	C	ENSMUST00000024123.8	1	ENSMUSG00000023353	missense	V/A	198	Agap3	ENSMUST00000024123.8:c.593T>C	ENSMUSP00000024123.4:p.Val198Ala	H-2-Db	9	10	2	FAFSLEDEI	FVFSLEDEI	NetMHC	85.78	1256.91	14.653	151	0.291	123.544	1036.389	8.389	1256.91	85.78	1654.5	193.2	815.8681887	127.5322436	763.0798752	119.5556211	SSC	-0.028571429	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.296	151	0	0	NA	5qA3	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr4	127048748	127048748	A	G	ENSMUST00000106102.8	1	ENSMUSG00000043872	missense	F/L	616	Zmym1	ENSMUST00000106102.8:c.1846T>C	ENSMUSP00000101708.2:p.Phe616Leu	H-2-Db	9	8	4	CSLLNTVHV	CSLFNTVHV	NetMHCpan	65.9	115	1.745	90	0.344	134.513	212.264	1.578	172.4	100.13	115	65.9	252.1273737	168.8962473	297.5568825	191.2361536	SSC	1.228571429	1.328571429	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.349	90	0	0	NA	4qD2.2	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr5	3571771	3571771	GA	G	ENSMUST00000008451.11	1	ENSMUSG00000008307	FS	K/X	7	1700109H08Rik	ENSMUST00000008451.11:c.25del	ENSMUSP00000008451.5:p.Met9TrpfsTer55	H-2-Db	9	31	0	FSIAWWDAL	NA	NetMHC	161.39	NA	NA	87	0.218	162.322	NA	NA	NA	161.39	NA	161.5	NA	195.7131469	NA	163.1435844	SSC	0.942857143	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.224	87	0	0	NA	5qA1	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	0.959383938	sgMsh2	cell line
chr4	128475742	128475742	A	C	ENSMUST00000184063.2	5	ENSMUSG00000028804	missense	E/A	1889	Csmd2	ENSMUST00000184063.2:c.5666A>C	ENSMUSP00000138958.2:p.Glu1889Ala	H-2-Db	9	9	3	VTAQNWDSL	VTEQNWDSL	NetMHCpan	100.1	1118	11.169	66	0.348	291.418	849.797	2.916	1567.14	189.63	1118	100.1	581.5941105	393.2058767	507.656557	415.4990164	SSC	-0.942857143	-0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.345	66	0	0	NA	4qD2.2	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr5	63806698	63806698	A	T	ENSMUST00000159584.2	1	ENSMUSG00000090061	missense	K/N	1208	Nwd2	ENSMUST00000159584.2:c.3624A>T	ENSMUSP00000124712.1:p.Lys1208Asn	H-2-Db	9	7	5	ILICNALSI	ILICKALSI	NetMHCpan	141.1	7481.9	53.026	143	0.259	238.859	9795.44	41.009	18580.86	208.18	7481.9	141.1	8762.337965	269.537999	10828.54237	322.5299134	SSC	1.828571429	2.485714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.245	143	0	0	NA	5qC3.1	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr5	3571771	3571771	GA	G	ENSMUST00000008451.11	1	ENSMUSG00000008307	FS	K/X	7	1700109H08Rik	ENSMUST00000008451.11:c.25del	ENSMUSP00000008451.5:p.Met9TrpfsTer55	H-2-Kb	8	27	0	VSYDFSIA	NA	NetMHC	23.52	NA	NA	87	0.218	51.845	NA	NA	NA	23.52	NA	28.4	NA	75.29046857	NA	87.24489012	SSC	0.385714286	0.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.224	87	0	0	NA	5qA1	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	0.959383938	sgMsh2	cell line
chr4	126832123	126832123	A	G	ENSMUST00000102607.9	1	ENSMUSG00000028830	missense	H/R	442	AU040320	ENSMUST00000102607.9:c.1325A>G	ENSMUSP00000099667.3:p.His442Arg	H-2-Kb	8	8	4	VQYRWEEL	VQYHWEEL	NetMHCpan	39.9	67.7	1.697	59	0.39	60.954	148.184	2.431	150.91	40.11	67.7	39.9	165.4778997	88.66250554	145.4587999	81.79749427	SSC	-1.914285714	-1.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.391	59	0	0	NA	4qD2.2	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr5	83294647	83294647	A	G	ENSMUST00000053543.10	1	ENSMUSG00000049537	missense	I/T	193	Tecrl	ENSMUST00000053543.10:c.578T>C	ENSMUSP00000062122.4:p.Ile193Thr	H-2-Kb	8	8	4	IHYTRLLL	IHYIRLLL	NetMHCpan	57.4	46.9	0.817	78	0.244	167.5	176.014	1.051	96.91	95.26	46.9	57.4	255.1173529	239.7397234	272.1071791	245.8895091	SSC	0.242857143	0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.253	78	0	0	NA	5qE1	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr5	3571771	3571771	GA	G	ENSMUST00000008451.11	1	ENSMUSG00000008307	FS	K/X	7	1700109H08Rik	ENSMUST00000008451.11:c.25del	ENSMUSP00000008451.5:p.Met9TrpfsTer55	H-2-Kb	8	33	0	IAWWDALL	NA	NetMHC	126.14	NA	NA	87	0.218	143.498	NA	NA	NA	126.14	NA	200.3	NA	160.597951	NA	126.3979412	SSC	0.842857143	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.224	87	0	0	NA	5qA1	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	0.959383938	sgMsh2	cell line
chr5	24477100	24477100	T	C	ENSMUST00000024123.8	1	ENSMUSG00000023353	missense	V/A	198	Agap3	ENSMUST00000024123.8:c.593T>C	ENSMUSP00000024123.4:p.Val198Ala	H-2-Kb	8	8	4	VVFAFSLE	VVFVFSLE	SMM	34.494	33.093	0.959	151	0.291	112.342	92.342	0.822	150.11	183.97	512.5	437.1	33.09329418	34.49371732	34.57323355	40.71364636	SSC	1.585714286	2.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.296	151	0	0	NA	5qA3	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr4	144565004	144565004	A	G	ENSMUST00000105748.1	5	ENSMUSG00000078506	missense	M/T	44	Aadacl4fm2	ENSMUST00000105748.1:c.131T>C	ENSMUSP00000101374.1:p.Met44Thr	H-2-Kb	8	11	1	TLHYFFQL	MLHYFFQL	NetMHCpan	42.3	48.8	1.154	124	0.355	175.549	130.503	0.743	218.44	221.41	48.8	42.3	150.9176382	211.2224132	110.0880046	139.8749679	SSC	0.742857143	0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.342	124	0	0	NA	4qE1	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr5	57720612	57720612	T	C	ENSMUST00000191837.5	1	ENSMUSG00000029108	missense	V/A	503	Pcdh7	ENSMUST00000191837.5:c.1508T>C	ENSMUSP00000142319.1:p.Val503Ala	H-2-Kb	8	5	7	TTREFNAV	TTREFNVV	SMM	170.506	401.55	2.355	94	0.234	273.109	916.574	3.356	1915.54	307.03	1295.2	590.7	401.5503419	170.5061311	537.9476318	239.1883374	SSC	-0.485714286	-0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.231	94	0	0	NA	5qC1	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	0.989364686	sgMsh2	cell line
chr5	90365969	90365969	C	CG	ENSMUST00000014421.14	5	ENSMUSG00000055204	FS	-/X	26-27	Ankrd17	ENSMUST00000014421.14:c.78dup	ENSMUSP00000014421.8:p.Ala27ArgfsTer101	H-2-Kb	8	28	0	SSWDGASL	NA	SMMPMBEC	136.691	NA	NA	13	0.308	184.611	NA	NA	NA	364.92	NA	180.1	NA	189.1211064	NA	136.691025	SSC	-0.114285714	-0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.3077	13	0	0	NA	5qE1	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr4	153386480	153386480	A	G	ENSMUST00000105646.2	5	ENSMUSG00000039546	missense	V/A	290	Ajap1	ENSMUST00000105646.2:c.869T>C	ENSMUSP00000101271.1:p.Val290Ala	H-2-Kb	8	6	6	IITITASL	IITITVSL	SMMPMBEC	287.568	829.354	2.884	91	0.385	381.064	1094.846	2.873	2140.69	471.23	1348.8	604.6	840.8915726	290.8975074	829.3541077	287.5676312	SSC	1.771428571	1.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.375	91	0	0	NA	4qE2	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr4	149469049	149469049	T	C	ENSMUST00000105693.1	1	ENSMUSG00000028992	missense	D/G	202	Nmnat1	ENSMUST00000105693.1:c.605A>G	ENSMUSP00000101318.1:p.Asp202Gly	H-2-Kb	8	6	6	FIYESGVL	FIYESDVL	SMM	209.768	492.879	2.35	73	0.301	400.327	1446.197	3.613	2225.22	505.71	2076.3	573.6	492.8786429	209.7683683	816.0936526	294.9442949	SSC	0.928571429	0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.329	73	0	0	NA	4qE2	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr4	144564983	144564983	A	G	ENSMUST00000105748.1	5	ENSMUSG00000078506	missense	L/P	51	Aadacl4fm2	ENSMUST00000105748.1:c.152T>C	ENSMUSP00000101374.1:p.Leu51Pro	H-2-Kb	8	5	7	LHYFFQPT	LHYFFQLT	NetMHCpan	236.5	344.9	1.458	127	0.307	357.167	962.247	2.694	1565.05	531.16	344.9	236.5	1075.820957	406.2000757	848.6722465	308.1342684	SSC	-0.671428571	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.302	127	0	0	NA	4qE1	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr4	148087939	148087939	T	A	ENSMUST00000030865.8	1	ENSMUSG00000029007	missense	E/V	2	Agtrap	ENSMUST00000030865.8:c.5A>T	ENSMUSP00000030865.8:p.Glu2Val	H-2-Kb	8	1	2	MVLPAVNL	MELPAVNL	SMM	313.863	1583.945	5.047	15	0.4	376.958	6234.554	16.539	13905.31	610.01	10327.5	331.5	1583.944645	313.8629122	2141.608096	422.4156501	SSC	1.814285714	1.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.437	15	0	0	NA	4qE2	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	2	1	sgMsh2	cell line
chr5	87694728	87694728	C	T	ENSMUST00000197422.4	1	ENSMUSG00000063157	missense	A/T	147	Csn2	ENSMUST00000197422.4:c.439G>A	ENSMUSP00000143341.1:p.Ala147Thr	H-2-Kb	8	9	3	SLTSLANL	SLASLANL	SMM	381.716	341.775	0.895	141	0.277	487.6	375.638	0.77	720.32	664.91	348.8	569	341.7747702	381.7156799	402.476011	406.2000757	SSC	1.171428571	1.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.285	141	0	0	NA	5qE1	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr5	72763770	72763770	G	A	ENSMUST00000071944.12	1	ENSMUSG00000029217	missense	H/Y	421	Tec	ENSMUST00000071944.12:c.1261C>T	ENSMUSP00000071836.6:p.His421Tyr	H-2-Kb	8	7	5	MKLTYPKL	MKLTHPKL	SMM	206.414	799.356	3.873	50	0.2	458.287	2856.211	6.232	5962.33	689.2	4729	793.1	799.3555598	206.414404	983.422182	227.3735801	SSC	-0.542857143	-0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.22	50	0	0	NA	5qC3.2	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	0.942252082	sgMsh2	cell line
chr5	3571771	3571771	GA	G	ENSMUST00000008451.11	1	ENSMUSG00000008307	FS	K/X	7	1700109H08Rik	ENSMUST00000008451.11:c.25del	ENSMUSP00000008451.5:p.Met9TrpfsTer55	H-2-Kb	9	27	0	VSYDFSIAW	NA	NetMHC	37.79	NA	NA	87	0.218	103.487	NA	NA	NA	37.79	NA	151.3	NA	106.6866308	NA	100.2882377	SSC	0.371428571	0.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.224	87	0	0	NA	5qA1	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	0.959383938	sgMsh2	cell line
chr5	69559600	69559600	G	T	ENSMUST00000087228.10	1	ENSMUSG00000029208	missense	Q/H	168	Guf1	ENSMUST00000087228.10:c.504G>T	ENSMUSP00000084480.4:p.Gln168His	H-2-Kb	9	4	8	FFLAFEAHL	FFLAFEAQL	NetMHC	82.2	123.13	1.498	205	0.293	229.444	263.489	1.148	123.13	82.2	352.8	236.5	268.6024688	222.3873092	258.3747087	273.6843727	SSC	1.042857143	1.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.29	205	0	0	NA	5qC3.1	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr5	72763770	72763770	G	A	ENSMUST00000071944.12	1	ENSMUSG00000029217	missense	H/Y	421	Tec	ENSMUST00000071944.12:c.1261C>T	ENSMUSP00000071836.6:p.His421Tyr	H-2-Kb	9	9	3	LTYPKLVQL	LTHPKLVQL	NetMHCpan	48.6	720.5	14.825	50	0.2	86.478	707.42	8.18	694.34	82.54	720.5	48.6	726.289892	127.6762152	491.1905468	90.41698059	SSC	0.214285714	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.22	50	0	0	NA	5qC3.2	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	0.942252082	sgMsh2	cell line
chr4	144565004	144565004	A	G	ENSMUST00000105748.1	5	ENSMUSG00000078506	missense	M/T	44	Aadacl4fm2	ENSMUST00000105748.1:c.131T>C	ENSMUSP00000101374.1:p.Met44Thr	H-2-Kb	9	10	2	HTLHYFFQL	HMLHYFFQL	NetMHCpan	47	60.3	1.283	124	0.355	134.804	68.981	0.512	115.84	115.35	60.3	47	70.00192775	185.8275068	67.95947262	154.2588183	SSC	0.742857143	0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.342	124	0	0	NA	4qE1	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr4	144564983	144564983	A	G	ENSMUST00000105748.1	5	ENSMUSG00000078506	missense	L/P	51	Aadacl4fm2	ENSMUST00000105748.1:c.152T>C	ENSMUSP00000101374.1:p.Leu51Pro	H-2-Kb	9	5	7	LHYFFQPTI	LHYFFQLTI	NetMHCpan	56.9	58	1.019	127	0.307	189.744	275.225	1.451	289.32	151.92	58	56.9	273.5961615	227.567375	276.8534884	237.82089	SSC	0.428571429	0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.302	127	0	0	NA	4qE1	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr4	126832123	126832123	A	G	ENSMUST00000102607.9	1	ENSMUSG00000028830	missense	H/R	442	AU040320	ENSMUST00000102607.9:c.1325A>G	ENSMUSP00000099667.3:p.His442Arg	H-2-Kb	9	7	5	IVQYRWEEL	IVQYHWEEL	NetMHC	174.25	167.19	0.959	59	0.39	278.449	296.503	1.065	167.19	174.25	354.2	445.8	308.3968972	297.9270937	284.6098982	258.9703239	SSC	-1.914285714	-0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.391	59	0	0	NA	4qD2.2	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr5	3571771	3571771	GA	G	ENSMUST00000008451.11	1	ENSMUSG00000008307	FS	K/X	7	1700109H08Rik	ENSMUST00000008451.11:c.25del	ENSMUSP00000008451.5:p.Met9TrpfsTer55	H-2-Kb	9	31	0	FSIAWWDAL	NA	NetMHC	179.9	NA	NA	87	0.218	294.902	NA	NA	NA	179.9	NA	271.2	NA	375.9326101	NA	318.6031021	SSC	0.942857143	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.224	87	0	0	NA	5qA1	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	0.959383938	sgMsh2	cell line
chr5	83294647	83294647	A	G	ENSMUST00000053543.10	1	ENSMUSG00000049537	missense	I/T	193	Tecrl	ENSMUST00000053543.10:c.578T>C	ENSMUSP00000062122.4:p.Ile193Thr	H-2-Kb	9	5	7	CHCIHYTRL	CHCIHYIRL	NetMHC	205.21	311.25	1.517	78	0.244	244.76	304.589	1.244	311.25	205.21	675.9	458.8	297.9270937	281.9096874	228.165512	207.6108278	SSC	0.157142857	0.157142857	TRUE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.253	78	0	0	NA	5qE1	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr5	3571771	3571771	GA	G	ENSMUST00000008451.11	1	ENSMUSG00000008307	FS	K/X	7	1700109H08Rik	ENSMUST00000008451.11:c.25del	ENSMUSP00000008451.5:p.Met9TrpfsTer55	H-2-Kb	9	32	0	SIAWWDALL	NA	NetMHC	227.13	NA	NA	87	0.218	356.707	NA	NA	NA	227.13	NA	500	NA	321.4474612	NA	391.9674468	SSC	0.842857143	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.224	87	0	0	NA	5qA1	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	0.959383938	sgMsh2	cell line
chr5	72763770	72763770	G	A	ENSMUST00000071944.12	1	ENSMUSG00000029217	missense	H/Y	421	Tec	ENSMUST00000071944.12:c.1261C>T	ENSMUSP00000071836.6:p.His421Tyr	H-2-Kb	9	6	6	MMKLTYPKL	MMKLTHPKL	SMM	238.292	833.892	3.499	50	0.2	260.752	981.296	3.763	1435.03	314.65	1128.7	271.9	833.8923698	238.292295	796.6177885	249.6031145	SSC	-0.542857143	0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.22	50	0	0	NA	5qC3.2	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	0.942252082	sgMsh2	cell line
chr5	90606874	90606874	A	G	ENSMUST00000031317.9	5	ENSMUSG00000029370	missense	S/P	195	Rassf6	ENSMUST00000031317.9:c.583T>C	ENSMUSP00000031317.6:p.Ser195Pro	H-2-Kb	9	4	8	HVYDHETPI	HVYDHETSI	SMM	221.876	386.465	1.742	119	0.218	421.609	748.334	1.775	1303.8	592.79	1059.9	587.8	386.4648502	221.8758325	436.7671833	255.4171179	SSC	-1.328571429	-1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.215	119	0	0	NA	5qE1	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	0.920837262	sgMsh2	cell line
chr5	127604164	127604164	T	G	ENSMUST00000031367.14	1	ENSMUSG00000029416	missense	S/R	347	Slc15a4	ENSMUST00000031367.14:c.1039A>C	ENSMUSP00000031367.8:p.Ser347Arg	H-2-Kb	8	5	7	TTYALQRL	TTYALQSL	NetMHC	18.7	32.38	1.732	90	0.278	27.243	45.615	1.674	32.38	18.7	26.6	20.7	58.84912366	33.78625068	71.57148034	39.78689062	SSC	-0.085714286	-0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.291	90	0	0	NA	5qG1.2	chr5-110099887-151647482	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	8	4	8	VLVSYTRL	VLVSYTRI	NetMHC	19.39	171.38	8.839	275	0.116	31.763	209.772	6.604	171.38	19.39	99.5	20.3	348.1288376	53.67103866	248.1646968	43.22549746	SSC	0.642857143	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.12	275	0	0	NA	6qB2.1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.513955681	sgMsh2	cell line
chr6	8176324	8176324	A	G	ENSMUST00000115537.1	1	ENSMUSG00000068794	missense	L/P	11	Col28a1	ENSMUST00000115537.1:c.32T>C	ENSMUSP00000111199.1:p.Leu11Pro	H-2-Kb	8	6	6	VAFCLPLL	VAFCLLLL	NetMHCpan	26.9	44.9	1.669	174	0.167	50.725	74.795	1.475	79	38.97	44.9	26.9	70.58948282	62.47985313	88.05215715	80.11982647	SSC	2.414285714	2.471428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.147	174	0	0	NA	6qA1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.629595709	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	8	6	6	VSYTRLLV	VSYTRILV	NetMHCpan	35.2	39.9	1.134	275	0.116	94.957	84.621	0.891	32.04	39.69	39.9	35.2	129.3421274	150.2242346	135.1263357	158.7596015	SSC	0.642857143	0.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.12	275	0	0	NA	6qB2.1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.513955681	sgMsh2	cell line
chr5	151561858	151561858	T	C	ENSMUST00000165928.3	5	ENSMUSG00000091794	missense	S/G	724	Vmn2r18	ENSMUST00000165928.3:c.2170A>G	ENSMUSP00000127506.1:p.Ser724Gly	H-2-Kb	8	5	7	SMVVFCGV	SMVVFCSV	NetMHC	46.03	69.18	1.503	326	0.206	157.77	147.604	0.936	69.18	46.03	69.4	98.4	230.0064421	222.1979255	225.8083514	217.1400833	SSC	2.771428571	2.771428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.21	326	0	0	NA	5qG3	chr5-110099887-151647482	4	2	2	0.96	4.11164545	NA	1	0.899422442	sgMsh2	cell line
chr6	42744168	42744168	C	A	ENSMUST00000213997.1	5	ENSMUSG00000095831	missense	L/I	44	Olfr453	ENSMUST00000213997.1:c.130C>A	ENSMUSP00000150467.1:p.Leu44Ile	H-2-Kb	8	11	1	IIIVLIRL	LIIVLIRL	NetMHC	48.08	340.51	7.082	383	0.178	60.133	318.749	5.301	340.51	48.08	796.9	125.2	296.9887511	62.62388407	245.8895091	57.64212727	SSC	2.971428571	3.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.175	383	0	0	NA	6qB2.1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.749518702	sgMsh2	cell line
chr5	135911218	135911218	GC	G	ENSMUST00000055808.5	1	ENSMUSG00000051391	FS	G/X	174	Ywhag	ENSMUST00000055808.5:c.521del	ENSMUSP00000051223.5:p.Gly174AlafsTer38	H-2-Kb	8	14	0	STTRFSTM	NA	NetMHC	50.97	NA	NA	100	0.27	122.847	NA	NA	NA	50.97	NA	87.3	NA	158.3944645	NA	187.8192059	SSC	-0.385714286	-0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.28	100	0	0	NA	5qG2	chr5-110099887-151647482	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr5	101917543	101917543	G	A	ENSMUST00000053177.13	1	ENSMUSG00000043940	missense	P/L	1253	Wdfy3	ENSMUST00000053177.13:c.3758C>T	ENSMUSP00000052607.7:p.Pro1253Leu	H-2-Kb	8	4	8	YAYVGTPL	YAYVGTPP	NetMHCpan	56.5	8260.8	146.209	53	0.302	103.844	6425.016	61.872	21265.76	61.22	8260.8	56.5	4589.231861	189.5570756	3799.618556	146.4670721	SSC	0.828571429	0.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.302	53	0	0	NA	5qE5	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr5	105606595	105606595	A	G	ENSMUST00000067924.12	1	ENSMUSG00000054720	missense	T/A	79	Lrrc8c	ENSMUST00000067924.12:c.235A>G	ENSMUSP00000066015.6:p.Thr79Ala	H-2-Kb	8	6	6	AVISTAPL	AVISTTPL	NetMHC	116.95	543.07	4.644	144	0.493	194.861	538.657	2.764	543.07	116.95	441.1	206.6	712.4263926	249.310173	534.2444264	183.1217795	SSC	1.6	1.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.5	144	0	0	NA	5qE5	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	2	1	sgMsh2	cell line
chr6	35270381	35270381	A	G	ENSMUST00000031868.4	1	ENSMUSG00000029843	missense	I/T	568	Slc13a4	ENSMUST00000031868.4:c.1703T>C	ENSMUSP00000031868.4:p.Ile568Thr	H-2-Kb	8	11	1	TVFSYGHC	IVFSYGHC	SMMPMBEC	126.398	45.787	0.362	137	0.139	145.752	48.403	0.332	38.66	171.24	51.8	148.7	51.01994663	142.8038776	45.7867692	126.3979412	SSC	0.542857143	0.542857143	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.142	137	0	0	NA	6qB1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.608180889	sgMsh2	cell line
chr6	30815960	30815960	A	G	ENSMUST00000048774.12	1	ENSMUSG00000025607	missense	V/A	480	Copg2	ENSMUST00000048774.12:c.1439T>C	ENSMUSP00000038368.6:p.Val480Ala	H-2-Kb	8	6	6	FIFNRAVL	FIFNRVVL	SMM	138.912	401.55	2.891	154	0.123	159.887	404.813	2.532	524.31	178.28	359.2	181.6	401.5503419	138.9120754	408.0750101	141.4946437	SSC	1.3	1.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.135	154	0	0	NA	6qA3.3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.578200141	sgMsh2	cell line
chr6	18405230	18405230	T	C	ENSMUST00000090601.11	1	ENSMUSG00000000416	missense	Y/C	1090	Cttnbp2	ENSMUST00000090601.11:c.3269A>G	ENSMUSP00000088089.5:p.Tyr1090Cys	H-2-Kb	8	7	5	SSVTCASM	SSVTYASM	NetMHC	276.55	6.31	0.023	236	0.136	362.299	24.523	0.068	6.31	276.55	15.8	475.5	35.70590129	399.7053856	33.24604589	324.8927349	SSC	1.157142857	1.157142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.137	236	0	0	NA	6qA2	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.586766069	sgMsh2	cell line
chr5	96700257	96700257	CG	C	ENSMUST00000036019.4	1	ENSMUSG00000034687	FS	S/X	1775	Fras1	ENSMUST00000036019.4:c.5329del	ENSMUSP00000043250.4:p.Asp1777IlefsTer100	H-2-Kb	8	72	0	TSLPLLTL	NA	NetMHCpan	350.5	NA	NA	81	0.346	428.931	NA	NA	NA	669.74	NA	350.5	NA	381.7156799	NA	476.1458462	SSC	1.728571429	1.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.357	81	0	0	NA	5qE3	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	2	1	sgMsh2	cell line
chr6	30815960	30815960	A	G	ENSMUST00000048774.12	1	ENSMUSG00000025607	missense	V/A	480	Copg2	ENSMUST00000048774.12:c.1439T>C	ENSMUSP00000038368.6:p.Val480Ala	H-2-Kb	8	4	8	IRFIFNRA	IRFIFNRV	SMMPMBEC	232.135	48.277	0.208	154	0.123	482.306	47.673	0.099	40.71	683.59	149.1	1240.7	47.06954498	281.0217928	48.27696948	232.1346655	SSC	-0.085714286	0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.135	154	0	0	NA	6qA3.3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.578200141	sgMsh2	cell line
chr5	116014936	116014936	T	C	ENSMUST00000031486.13	1	ENSMUSG00000029513	missense	H/R	238	Prkab1	ENSMUST00000031486.13:c.713A>G	ENSMUSP00000031486.7:p.His238Arg	H-2-Kb	9	7	5	VMLNRLYAL	VMLNHLYAL	NetMHC	35.59	32.6	0.916	283	0.191	46.64	43.284	0.928	32.6	35.59	42.4	56.3	44.16823044	42.66875784	55.62243536	50.61159219	SSC	0.557142857	0.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.195	283	0	0	NA	5qF	chr5-110099887-151647482	4	2	2	0.96	4.11164545	NA	1	0.835177982	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	9	3	9	LVLVSYTRL	LVLVSYTRI	NetMHC	46.33	202.94	4.38	275	0.116	99.281	285.444	2.875	202.94	46.33	207.6	48.9	371.6293451	149.6614677	363.2871195	157.1267038	SSC	0.642857143	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.12	275	0	0	NA	6qB2.1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.513955681	sgMsh2	cell line
chr5	129595427	129595427	T	G	ENSMUST00000031390.9	1	ENSMUSG00000029436	missense	S/A	148	Mmp17	ENSMUST00000031390.9:c.442T>G	ENSMUSP00000031390.8:p.Ser148Ala	H-2-Kb	9	5	7	RTFPRDAPL	RTFPRDSPL	NetMHC	69.85	178.55	2.556	93	0.226	126.8	193.56	1.527	178.55	69.85	126.7	77.3	219.8416627	205.1681772	208.5691158	176.2990613	SSC	-0.4	-0.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.229	93	0	0	NA	5qG1.3	chr5-110099887-151647482	4	2	2	0.96	4.11164545	NA	1	0.980798758	sgMsh2	cell line
chr5	135911218	135911218	GC	G	ENSMUST00000055808.5	1	ENSMUSG00000051391	FS	G/X	174	Ywhag	ENSMUST00000055808.5:c.521del	ENSMUSP00000051223.5:p.Gly174AlafsTer38	H-2-Kb	9	13	0	RSTTRFSTM	NA	NetMHC	134.8	NA	NA	100	0.27	291.462	NA	NA	NA	134.8	NA	218.8	NA	382.9217191	NA	364.1245828	SSC	-0.385714286	-0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.28	100	0	0	NA	5qG2	chr5-110099887-151647482	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr5	104968246	104968246	A	G	ENSMUST00000031239.12	1	ENSMUSG00000029299	missense	S/P	241	Abcg3	ENSMUST00000031239.12:c.721T>C	ENSMUSP00000031239.6:p.Ser241Pro	H-2-Kb	9	11	1	PIFKFFDSL	SIFKFFDSL	SMM	90.805	37.507	0.413	129	0.194	108.309	21.983	0.203	6.46	139.94	5	106.4	37.50679891	90.8050496	43.17675507	110.2173589	SSC	0.571428571	0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	129	0	0	NA	5qE5	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	0.856592802	sgMsh2	cell line
chr5	122461781	122461781	GC	G	ENSMUST00000031423.9	1	ENSMUSG00000029467	FS	A/X	516	Atp2a2	ENSMUST00000031423.9:c.1546del	ENSMUSP00000031423.8:p.Ala516LeufsTer21	H-2-Kb	9	3	9	MSKMFVKGL	MSKMFVKGA	NetMHCpan	152.4	3500.5	22.969	158	0.215	418.932	5998.587	14.319	7702.15	182.85	3500.5	152.4	6936.014622	772.8763178	5061.159219	655.0131214	SSC	0.642857143	0.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.225	158	0	0	NA	5qF	chr5-110099887-151647482	4	2	2	0.96	4.11164545	NA	1	0.963666902	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	9	4	8	VLVSYTRLL	VLVSYTRIL	NetMHCpan	118.1	254.3	2.153	275	0.116	338.726	712.479	2.103	683.46	204.18	254.3	118.1	741.4980274	473.271116	959.9530659	622.6586131	SSC	0.642857143	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.12	275	0	0	NA	6qB2.1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.513955681	sgMsh2	cell line
chr6	21969962	21969962	AT	A	ENSMUST00000031680.9	1	ENSMUSG00000029670	FS	F/X	255	Ing3	ENSMUST00000031680.9:c.765del	ENSMUSP00000031680.3:p.Phe255LeufsTer28	H-2-Kb	9	6	6	ASYEALRTM	ASYEAFKNN	NetMHCpan	118.9	3692.7	31.057	235	0.153	259.274	2367.641	9.132	5898.86	215.78	3692.7	118.9	1042.581466	302.7680195	789.3143527	447.9711029	SSC	-0.357142857	-0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.156	235	0	0	NA	6qA3.1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.668142386	sgMsh2	cell line
chr5	137758482	137758482	TG	T	ENSMUST00000110985.1	2	ENSMUSG00000029723	FS	L/X	57	Tsc22d4	ENSMUST00000110985.1:c.177del	ENSMUSP00000106613.1:p.Pro60GlnfsTer18	H-2-Kb	9	22	0	VGWTKAFSL	NA	NetMHCpan	103.3	NA	NA	110	0.209	321.493	NA	NA	NA	216.16	NA	103.3	NA	472.1826226	NA	426.8251484	SSC	0.3	0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2091	110	0	0	NA	5qG2	chr5-110099887-151647482	4	2	2	0.96	4.11164545	NA	1	0.895567774	sgMsh2	cell line
chr5	96700257	96700257	CG	C	ENSMUST00000036019.4	1	ENSMUSG00000034687	FS	S/X	1775	Fras1	ENSMUST00000036019.4:c.5329del	ENSMUSP00000043250.4:p.Asp1777IlefsTer100	H-2-Kb	9	102	0	TTFRTTLSL	NA	NetMHCpan	137.2	NA	NA	81	0.346	402.251	NA	NA	NA	245.89	NA	137.2	NA	558.6116644	NA	616.9500447	SSC	0.528571429	0.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.357	81	0	0	NA	5qE3	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	2	1	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	9	6	6	VSYTRLLVA	VSYTRILVA	NetMHCpan	129.9	163.6	1.259	275	0.116	176.155	270.535	1.536	712.71	415.25	163.6	129.9	323.6756285	203.287184	217.3952246	149.021867	SSC	1.014285714	1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.12	275	0	0	NA	6qB2.1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.513955681	sgMsh2	cell line
chr6	57600007	57600007	T	C	ENSMUST00000031817.9	1	ENSMUSG00000029798	missense	L/P	235	Herc6	ENSMUST00000031817.9:c.704T>C	ENSMUSP00000031817.8:p.Leu235Pro	H-2-Db	9	6	6	GALKNPSVI	GALKNLSVI	NetMHC	13.46	7.99	0.594	207	0.184	47.099	27.26	0.579	7.99	13.46	16.8	37.5	48.2636319	70.24574131	37.71985373	56.6982951	SSC	0.385714286	0.385714286	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.182	207	0	0	NA	6qB3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.77949945	sgMsh2	cell line
chr6	57432499	57432499	A	T	ENSMUST00000227909.1	NA	ENSMUSG00000115253	missense	Y/F	270	Vmn1r20	ENSMUST00000227909.1:c.809A>T	ENSMUSP00000153815.1:p.Tyr270Phe	H-2-Db	9	11	1	FAYPTISPL	YAYPTISPL	NetMHCpan	195.9	160.5	0.819	504	0.151	491.745	460.71	0.937	318.07	309.63	160.5	195.9	617.4758832	712.2295691	603.3509488	673.8605002	SSC	0.328571429	0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.157	504	0	0	NA	6qB3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.67242535	sgMsh2	cell line
chr6	132737578	132737578	T	C	ENSMUST00000095394.3	NA	ENSMUSG00000071149	missense	M/V	137	Tas2r115	ENSMUST00000095394.3:c.409A>G	ENSMUSP00000093043.2:p.Met137Val	H-2-Kb	8	11	1	VILLFFNI	MILLFFNI	NetMHC	9.63	29.25	3.037	195	0.031	14.585	31	2.126	29.25	9.63	88.9	32.7	30.25101842	14.18208226	31.74972734	14.98787285	SSC	2.671428571	2.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.036	195	0	0	NA	6qG1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.154186704	sgMsh2	cell line
chr6	141812722	141812722	C	T	ENSMUST00000165990.7	1	ENSMUSG00000030237	missense	C/Y	521	Slco1a4	ENSMUST00000165990.7:c.1562G>A	ENSMUSP00000130746.1:p.Cys521Tyr	H-2-Kb	8	9	3	IGYFIFSL	IGCFIFSL	NetMHCpan	12.6	242.8	19.27	268	0.149	37.327	643.393	17.237	1369.2	21.72	242.8	12.6	759.871227	64.52678095	526.9143181	52.93464441	SSC	1.628571429	1.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.155	268	0	0	NA	6qG2	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.663859422	sgMsh2	cell line
chr6	57432499	57432499	A	T	ENSMUST00000227909.1	NA	ENSMUSG00000115253	missense	Y/F	270	Vmn1r20	ENSMUST00000227909.1:c.809A>T	ENSMUSP00000153815.1:p.Tyr270Phe	H-2-Kb	8	9	3	LMFAYPTI	LMYAYPTI	NetMHCpan	23.5	18.4	0.783	504	0.151	117.837	79.517	0.675	27.59	68.28	18.4	23.5	140.5206015	189.5570756	131.4437679	167.3940435	SSC	1.057142857	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.157	504	0	0	NA	6qB3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.67242535	sgMsh2	cell line
chr6	141532679	141532679	A	G	ENSMUST00000032362.11	1	ENSMUSG00000030235	missense	K/R	56	Slco1c1	ENSMUST00000032362.11:c.167A>G	ENSMUSP00000032362.9:p.Lys56Arg	H-2-Kb	8	4	8	LSFVYFAR	LSFVYFAK	NetMHC	71.6	273.33	3.817	149	0.161	97.337	165.283	1.698	273.33	71.6	241.7	126.8	88.86689373	86.84403626	56.4598864	107.830098	SSC	0.714285714	1.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.16	149	0	0	NA	6qG2	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.685274242	sgMsh2	cell line
chr6	73083103	73083103	G	T	ENSMUST00000064948.12	5	ENSMUSG00000052861	missense	L/I	2833	Dnah6	ENSMUST00000064948.12:c.8497C>A	ENSMUSP00000068758.6:p.Leu2833Ile	H-2-Kb	8	8	4	SNFIRRLL	SNFLRRLL	NetMHCpan	34.4	28.7	0.834	177	0.136	123.623	98.051	0.793	56.87	79.08	28.7	34.4	139.2323008	168.1666993	154.7889663	195.3169797	SSC	0.342857143	0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.14	177	0	0	NA	6qC1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.599614961	sgMsh2	cell line
chr6	131678742	131678742	C	T	ENSMUST00000076756.2	NA	ENSMUSG00000057754	missense	G/S	49	Tas2r106	ENSMUST00000076756.2:c.145G>A	ENSMUSP00000076043.2:p.Gly49Ser	H-2-Kb	8	5	7	AGFILTSL	AGFILTGL	NetMHCpan	58.8	55.1	0.937	247	0.138	111.99	98.799	0.882	70.03	91.32	55.1	58.8	135.4378341	140.197413	127.5674869	132.6600022	SSC	1.857142857	1.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.144	247	0	0	NA	6qF3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.616746817	sgMsh2	cell line
chr6	141532679	141532679	A	G	ENSMUST00000032362.11	1	ENSMUSG00000030235	missense	K/R	56	Slco1c1	ENSMUST00000032362.11:c.167A>G	ENSMUSP00000032362.9:p.Lys56Arg	H-2-Kb	8	5	7	SFVYFARA	SFVYFAKA	NetMHC	104.42	421.4	4.036	149	0.161	172.62	538.576	3.12	421.4	104.42	215.7	105.5	804.8964279	281.6696149	655.752568	239.7397234	SSC	1.085714286	1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.16	149	0	0	NA	6qG2	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.685274242	sgMsh2	cell line
chr6	141532679	141532679	A	G	ENSMUST00000032362.11	1	ENSMUSG00000030235	missense	K/R	56	Slco1c1	ENSMUST00000032362.11:c.167A>G	ENSMUSP00000032362.9:p.Lys56Arg	H-2-Kb	8	6	6	FVYFARAL	FVYFAKAL	NetMHCpan	53.9	100.9	1.872	149	0.161	100.957	211.274	2.093	281	106.91	100.9	53.9	196.218522	95.00358634	226.3288934	123.2366829	SSC	1.228571429	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.16	149	0	0	NA	6qG2	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.685274242	sgMsh2	cell line
chr6	57210453	57210453	T	C	ENSMUST00000227421.1	NA	ENSMUSG00000064259	missense	M/T	199	Vmn1r13	ENSMUST00000227421.1:c.596T>C	ENSMUSP00000154429.1:p.Met199Thr	H-2-Kb	8	8	4	SAYTVIIL	SAYMVIIL	NetMHC	115.95	94.02	0.811	909	0.157	153.083	167.312	1.093	94.02	115.95	126.3	126.8	208.324333	179.3659491	261.6616044	268.9923939	SSC	2.4	2.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.151	909	0	0	NA	6qB3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.646727566	sgMsh2	cell line
chr6	104774501	104774501	A	T	ENSMUST00000089215.11	1	ENSMUSG00000030092	missense	I/F	373	Cntn6	ENSMUST00000089215.11:c.1117A>T	ENSMUSP00000086623.5:p.Ile373Phe	H-2-Kb	8	7	5	GTLIFTML	GTLIITML	SMMPMBEC	105.133	2628.694	25.003	324	0.17	134.399	4165.967	30.997	8283.75	147.8	3908.7	128.6	4423.234863	140.197413	2628.693795	105.1332282	SSC	2.2	2.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.168	324	0	0	NA	6qE1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.719537954	sgMsh2	cell line
chr6	123741853	123741853	TC	T	ENSMUST00000172391.3	5	ENSMUSG00000091620	FS	P/X	722	Vmn2r23	ENSMUST00000172391.3:c.2168del	ENSMUSP00000126682.2:p.Pro723LeufsTer47	H-2-Kb	8	28	0	VVMRGPPL	NA	NetMHCpan	128.3	NA	NA	862	0.03	177.142	NA	NA	NA	147.87	NA	128.3	NA	326.3923717	NA	206.414404	SSC	0.257142857	0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.032	862	0	0	NA	6qF2	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.137054848	sgMsh2	cell line
chr6	124061284	124061284	C	T	ENSMUST00000032238.4	1	ENSMUSG00000096630	missense	A/V	606	Vmn2r26	ENSMUST00000032238.4:c.1817C>T	ENSMUSP00000032238.3:p.Ala606Val	H-2-Kb	8	10	2	SVFSAMIL	SAFSAMIL	NetMHCpan	95.4	113.7	1.192	526	0.127	207.424	182.361	0.879	129.9	176.21	113.7	95.4	234.8226582	238.6382195	365.3759857	337.8625068	SSC	2.6	2.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.128	526	0	0	NA	6qF2	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.548219393	sgMsh2	cell line
chr6	123393926	123393926	GT	G	ENSMUST00000172199.2	5	ENSMUSG00000094145	FS	T/X	532	Vmn2r20	ENSMUST00000172199.2:c.1594del	ENSMUSP00000129145.1:p.Thr532HisfsTer77	H-2-Kb	8	19	0	VALIVSHV	NA	NetMHC	186.77	NA	NA	350	0.134	365.081	NA	NA	NA	186.77	NA	363.1	NA	367.0624846	NA	443.3431473	SSC	2.071428571	2.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.135	350	0	0	NA	6qF2	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.578200141	sgMsh2	cell line
chr6	106716710	106716710	G	A	ENSMUST00000204659.2	1	ENSMUSG00000005364	missense	L/F	356	Il5ra	ENSMUST00000204659.2:c.1066C>T	ENSMUSP00000144718.1:p.Leu356Phe	H-2-Kb	8	5	7	VLLIFSFI	VLLIFSLI	SMMPMBEC	138.274	198.034	1.432	146	0.062	148.882	178.902	1.202	159.77	217.75	97.1	149.6	223.2235446	148.1630809	198.0341096	138.2738324	SSC	3.057142857	3.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.071	146	0	0	NA	6qE1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.304090445	sgMsh2	cell line
chr6	123741853	123741853	TC	T	ENSMUST00000172391.3	5	ENSMUSG00000091620	FS	P/X	722	Vmn2r23	ENSMUST00000172391.3:c.2168del	ENSMUSP00000126682.2:p.Pro723LeufsTer47	H-2-Kb	8	42	0	ATWAFWPV	NA	SMMPMBEC	51.255	NA	NA	862	0.03	66.922	NA	NA	NA	252.7	NA	75.4	NA	58.44400914	NA	51.25544401	SSC	0.671428571	0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.032	862	0	0	NA	6qF2	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.137054848	sgMsh2	cell line
chr6	69283934	69283934	TA	T	ENSMUST00000103349.1	NA	ENSMUSG00000076548	FS	Y/X	70	Igkv4-69	ENSMUST00000103349.1:c.208del	ENSMUSP00000100150.1:p.Tyr70MetfsTer26	H-2-Kb	8	25	0	VAVGLGPL	NA	NetMHC	277.12	NA	NA	857	0.131	319.498	NA	NA	NA	277.12	NA	307.3	NA	344.9371732	NA	331.6958211	SSC	1.6	1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.13	857	0	0	NA	6qC1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.556785321	sgMsh2	cell line
chr6	104774501	104774501	A	T	ENSMUST00000089215.11	1	ENSMUSG00000030092	missense	I/F	373	Cntn6	ENSMUST00000089215.11:c.1117A>T	ENSMUSP00000086623.5:p.Ile373Phe	H-2-Kb	8	9	3	LIFTMLNI	LIITMLNI	NetMHCpan	150.6	999.2	6.635	324	0.17	299.911	1440.126	4.802	2010.94	326.67	999.2	150.6	1565.813381	322.6561891	1314.437679	277.1660292	SSC	1.9	1.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.168	324	0	0	NA	6qE1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.719537954	sgMsh2	cell line
chr6	125980155	125980155	A	G	ENSMUST00000160496.7	1	ENSMUSG00000038115	missense	K/R	629	Ano2	ENSMUST00000160496.7:c.1886A>G	ENSMUSP00000125303.1:p.Lys629Arg	H-2-Kb	8	6	6	KAFLLRFV	KAFLLKFV	NetMHCpan	272.4	547.6	2.01	273	0.158	351.17	682.716	1.944	1229.78	480.77	547.6	272.4	681.9303192	330.1718172	683.502331	372.1688324	SSC	2.1	2.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.153	273	0	0	NA	6qF3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.655293494	sgMsh2	cell line
chr6	123704621	123704621	A	T	ENSMUST00000172391.3	5	ENSMUSG00000091620	missense	I/F	163	Vmn2r23	ENSMUST00000172391.3:c.487A>T	ENSMUSP00000126682.2:p.Ile163Phe	H-2-Kb	8	7	5	QISQFLSL	QISQILSL	SMM	366.218	11554.203	31.55	518	0.16	483.614	12379.626	25.598	14348.38	566.45	6784.1	439.1	11554.20317	366.2182643	13205.04848	528.128981	SSC	1.4	1.4	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.15	518	0	0	NA	6qF2	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.642444602	sgMsh2	cell line
chr6	72515320	72515320	A	G	ENSMUST00000162561.8	1	ENSMUSG00000052631	missense	V/A	181	Sh2d6	ENSMUST00000162561.8:c.542T>C	ENSMUSP00000124673.2:p.Val181Ala	H-2-Kb	8	5	7	QPFTLAAL	QPFTLAVL	SMM	136.691	321.914	2.355	77	0.169	392.013	1659.23	4.233	2868.95	584.16	4165.5	2841.1	321.9141004	136.691025	449.5106648	199.8664966	SSC	1.671428571	1.671428571	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.167	77	0	0	NA	6qC1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.71525499	sgMsh2	cell line
chr6	141532679	141532679	A	G	ENSMUST00000032362.11	1	ENSMUSG00000030235	missense	K/R	56	Slco1c1	ENSMUST00000032362.11:c.167A>G	ENSMUSP00000032362.9:p.Lys56Arg	H-2-Kb	9	4	8	LSFVYFARA	LSFVYFAKA	NetMHC	8.07	18.23	2.259	149	0.161	41.355	63.038	1.524	18.23	8.07	19.6	12.2	162.2220929	88.94263671	106.4755765	70.50988397	SSC	1.085714286	1.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.16	149	0	0	NA	6qG2	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.685274242	sgMsh2	cell line
chr6	124061284	124061284	C	T	ENSMUST00000032238.4	1	ENSMUSG00000096630	missense	A/V	606	Vmn2r26	ENSMUST00000032238.4:c.1817C>T	ENSMUSP00000032238.3:p.Ala606Val	H-2-Kb	9	7	5	ISLSVFSAM	ISLSAFSAM	NetMHC	29.67	17.34	0.584	526	0.127	96.824	71.54	0.739	17.34	29.67	28.5	31.8	114.5803119	161.8489924	169.9221522	190.6557905	SSC	1.842857143	1.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.128	526	0	0	NA	6qF2	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.548219393	sgMsh2	cell line
chr6	57432499	57432499	A	T	ENSMUST00000227909.1	NA	ENSMUSG00000115253	missense	Y/F	270	Vmn1r20	ENSMUST00000227909.1:c.809A>T	ENSMUSP00000153815.1:p.Tyr270Phe	H-2-Kb	9	11	1	FAYPTISPL	YAYPTISPL	NetMHC	61.59	61.61	1	504	0.151	103.321	112.661	1.09	61.61	61.59	63.1	64.7	162.2220929	141.9416992	246.1784313	216.8952295	SSC	0.328571429	0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.157	504	0	0	NA	6qB3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.67242535	sgMsh2	cell line
chr6	106716710	106716710	G	A	ENSMUST00000204659.2	1	ENSMUSG00000005364	missense	L/F	356	Il5ra	ENSMUST00000204659.2:c.1066C>T	ENSMUSP00000144718.1:p.Leu356Phe	H-2-Kb	9	7	5	LIFSFICRV	LIFSLICRV	NetMHC	66.78	507.7	7.603	146	0.062	103.625	516.156	4.981	507.7	66.78	520.5	67.9	511.811453	139.3509712	598.7561676	183.7595844	SSC	1.642857143	2.871428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.071	146	0	0	NA	6qE1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.304090445	sgMsh2	cell line
chr6	132737578	132737578	T	C	ENSMUST00000095394.3	NA	ENSMUSG00000071149	missense	M/V	137	Tas2r115	ENSMUST00000095394.3:c.409A>G	ENSMUSP00000093043.2:p.Met137Val	H-2-Kb	9	11	1	VILLFFNIF	MILLFFNIF	SMM	35.984	92.281	2.564	195	0.031	66.078	169.04	2.558	192.45	75.89	1112.7	421.3	92.28051297	35.98404656	145.6297151	56.26651281	SSC	2.428571429	2.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.036	195	0	0	NA	6qG1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.154186704	sgMsh2	cell line
chr6	141532679	141532679	A	G	ENSMUST00000032362.11	1	ENSMUSG00000030235	missense	K/R	56	Slco1c1	ENSMUST00000032362.11:c.167A>G	ENSMUSP00000032362.9:p.Lys56Arg	H-2-Kb	9	5	7	SFVYFARAL	SFVYFAKAL	NetMHC	90.76	210.98	2.325	149	0.161	303.576	377.92	1.245	210.98	90.76	211.2	119.5	544.6405843	487.6519891	802.1396792	782.0778752	SSC	1.228571429	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.16	149	0	0	NA	6qG2	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.685274242	sgMsh2	cell line
chr6	132737578	132737578	T	C	ENSMUST00000095394.3	NA	ENSMUSG00000071149	missense	M/V	137	Tas2r115	ENSMUST00000095394.3:c.409A>G	ENSMUSP00000093043.2:p.Met137Val	H-2-Kb	9	10	2	SVILLFFNI	SMILLFFNI	NetMHC	122.72	93.56	0.762	195	0.031	240.506	148.737	0.618	93.56	122.72	164.7	193.2	132.7730709	287.8127307	172.683165	350.9538411	SSC	2.671428571	3.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.036	195	0	0	NA	6qG1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.154186704	sgMsh2	cell line
chr6	56730679	56730679	A	C	ENSMUST00000031805.10	1	ENSMUSG00000029787	missense	K/T	203	Avl9	ENSMUST00000031805.10:c.608A>C	ENSMUSP00000031805.8:p.Lys203Thr	H-2-Kb	9	11	1	TVLFYISPV	KVLFYISPV	NetMHCpan	77.4	99.7	1.288	132	0.174	167.906	288.749	1.72	213.49	126.28	99.7	77.4	364.0072218	239.9440583	370.0411313	209.5318271	SSC	1.657142857	1.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.166	132	0	0	NA	6qB3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.710972026	sgMsh2	cell line
chr6	141812722	141812722	C	T	ENSMUST00000165990.7	1	ENSMUSG00000030237	missense	C/Y	521	Slco1a4	ENSMUST00000165990.7:c.1562G>A	ENSMUSP00000130746.1:p.Cys521Tyr	H-2-Kb	9	8	4	IIGYFIFSL	IIGCFIFSL	NetMHCpan	173.5	312.4	1.801	268	0.149	196.067	288.705	1.472	297.35	189.78	312.4	173.5	279.9690348	202.3531643	280.0593007	222.9718309	SSC	1.628571429	2.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.155	268	0	0	NA	6qG2	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.663859422	sgMsh2	cell line
chr6	108399280	108399280	C	T	ENSMUST00000032192.8	1	ENSMUSG00000030102	missense	R/W	1235	Itpr1	ENSMUST00000032192.8:c.3703C>T	ENSMUSP00000032192.6:p.Arg1235Trp	H-2-Kb	9	9	3	IMWLAHEFL	IMRLAHEFL	NetMHCpan	173.3	364.8	2.105	199	0.156	275.443	622.207	2.259	738.74	227.21	364.8	173.3	566.3827268	323.6756285	678.0317017	326.7758854	SSC	0.657142857	0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.167	199	0	0	NA	6qE1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.71525499	sgMsh2	cell line
chr6	123741853	123741853	TC	T	ENSMUST00000172391.3	5	ENSMUSG00000091620	FS	P/X	722	Vmn2r23	ENSMUST00000172391.3:c.2168del	ENSMUSP00000126682.2:p.Pro723LeufsTer47	H-2-Kb	9	27	0	SVVMRGPPL	NA	NetMHC	234.84	NA	NA	862	0.03	305.64	NA	NA	NA	234.84	NA	310.5	NA	345.2311699	NA	300.7807237	SSC	0.257142857	0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.032	862	0	0	NA	6qF2	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.137054848	sgMsh2	cell line
chr6	106716710	106716710	G	A	ENSMUST00000204659.2	1	ENSMUSG00000005364	missense	L/F	356	Il5ra	ENSMUST00000204659.2:c.1066C>T	ENSMUSP00000144718.1:p.Leu356Phe	H-2-Kb	9	10	2	SFICRVCHL	SLICRVCHL	NetMHC	254.83	704.37	2.764	146	0.062	341.483	769.266	2.253	704.37	254.83	277.8	291.9	1061.964502	408.4228203	834.1612282	391.0659467	SSC	1.4	1.6	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;Vardict	3	0.071	146	0	0	NA	6qE1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.304090445	sgMsh2	cell line
chr6	123704621	123704621	A	T	ENSMUST00000172391.3	5	ENSMUSG00000091620	missense	I/F	163	Vmn2r23	ENSMUST00000172391.3:c.487A>T	ENSMUSP00000126682.2:p.Ile163Phe	H-2-Kb	9	6	6	TQISQFLSL	TQISQILSL	NetMHCpan	172.2	1333.9	7.746	518	0.16	419.276	2121.116	5.059	2185.82	257.64	1333.9	172.2	2056.411387	580.9115347	2350.985768	687.4640623	SSC	1.4	1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.15	518	0	0	NA	6qF2	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.642444602	sgMsh2	cell line
chr6	123393926	123393926	GT	G	ENSMUST00000172199.2	5	ENSMUSG00000094145	FS	T/X	532	Vmn2r20	ENSMUST00000172199.2:c.1594del	ENSMUSP00000129145.1:p.Thr532HisfsTer77	H-2-Kb	9	58	0	LKLRYFCPM	NA	NetMHCpan	300.4	NA	NA	350	0.134	310.882	NA	NA	NA	311.13	NA	300.4	NA	338.9299909	NA	310.6347231	SSC	0.514285714	0.514285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.135	350	0	0	NA	6qF2	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.578200141	sgMsh2	cell line
chr6	134484391	134484391	T	G	ENSMUST00000032322.14	1	ENSMUSG00000030201	missense	E/A	701	Lrp6	ENSMUST00000032322.14:c.2102A>C	ENSMUSP00000032322.8:p.Glu701Ala	H-2-Kb	9	4	8	SALEHVVAF	SALEHVVEF	NetMHC	346.5	552.55	1.595	197	0.157	444.167	549.223	1.237	552.55	346.5	572.2	399.4	545.8961105	515.3591605	539.8212792	488.9337312	SSC	1.442857143	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.142	197	0	0	NA	6qG1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.608180889	sgMsh2	cell line
chr6	57210453	57210453	T	C	ENSMUST00000227421.1	NA	ENSMUSG00000064259	missense	M/T	199	Vmn1r13	ENSMUST00000227421.1:c.596T>C	ENSMUSP00000154429.1:p.Met199Thr	H-2-Kb	9	8	4	SAYTVIILF	SAYMVIILF	SMM	379.411	316.308	0.834	909	0.157	425.127	352.082	0.828	351.59	425.39	1259.3	742	316.3078717	379.4110717	352.5737704	424.864065	SSC	2.542857143	2.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.151	909	0	0	NA	6qB3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.646727566	sgMsh2	cell line
chr6	89845352	89845352	C	A	ENSMUST00000227279.1	NA	ENSMUSG00000068232	missense	M/I	78	Vmn1r42	ENSMUST00000227279.1:c.234G>T	ENSMUSP00000154442.1:p.Met78Ile	H-2-Kb	9	4	8	LSLIHLLIL	LSLIHLLML	SMMPMBEC	201.953	141.661	0.701	938	0.03	305.068	155.96	0.511	139.67	455.68	175.6	390.8	170.2589693	219.3360409	141.6609011	201.9528563	SSC	3	3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.031	938	0	0	NA	6qD1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.132771884	sgMsh2	cell line
chr6	141812722	141812722	C	T	ENSMUST00000165990.7	1	ENSMUSG00000030237	missense	C/Y	521	Slco1a4	ENSMUST00000165990.7:c.1562G>A	ENSMUSP00000130746.1:p.Cys521Tyr	H-2-Kb	9	6	6	ISIIGYFIF	ISIIGCFIF	SMMPMBEC	241.685	1047.731	4.335	268	0.149	492.662	1781.784	3.617	2248.01	704.71	3629.2	809.7	1315.558	280.61443	1047.731497	241.6851686	SSC	2.485714286	2.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.155	268	0	0	NA	6qG2	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.663859422	sgMsh2	cell line
chr6	141812722	141812722	C	T	ENSMUST00000165990.7	1	ENSMUSG00000030237	missense	C/Y	521	Slco1a4	ENSMUST00000165990.7:c.1562G>A	ENSMUSP00000130746.1:p.Cys521Tyr	H-2-Kb	9	9	3	IGYFIFSLG	IGCFIFSLG	NetMHCpan	204	3846.9	18.857	268	0.149	419.218	4646.653	11.084	11963.68	1462.02	3846.9	204	5446.405843	477.6502397	2589.703239	360.7862685	SSC	1.628571429	1.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.155	268	0	0	NA	6qG2	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.663859422	sgMsh2	cell line
chr7	36769746	36769746	CA	C	ENSMUST00000021641.7	1	ENSMUSG00000021217	FS	K/X	387	Tshz3	ENSMUST00000021641.7:c.1161del	ENSMUSP00000021641.6:p.Lys387AsnfsTer19	H-2-Db	9	7	5	SQILNAWSV	NA	NetMHC	16.07	NA	NA	84	0.274	71.082	NA	NA	NA	16.07	NA	28.5	NA	113.6632317	NA	129.5895554	SSC	1.3	1.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.282	84	0	0	NA	7qB2	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr7	62379763	62379763	AG	A	ENSMUST00000080403.6	NA	ENSMUSG00000056972	FS	R/X	805	Magel2	ENSMUST00000080403.6:c.2419del	ENSMUSP00000079265.5:p.Ala807HisfsTer67	H-2-Db	9	47	0	SSLPLLMPL	NA	SMM	243.568	NA	NA	172	0.192	496.602	NA	NA	NA	725.17	NA	662.4	NA	243.567871	NA	330.803427	SSC	1.985714286	1.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.196	172	0	0	NA	7qC	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	0.839460946	sgMsh2	cell line
chr7	25272796	25272796	A	G	ENSMUST00000169266.7	1	ENSMUSG00000005442	missense	I/V	651	Cic	ENSMUST00000169266.7:c.1951A>G	ENSMUSP00000132351.1:p.Ile651Val	H-2-Db	10	2	10	FSPINASPVV	FSPINASPVI	NetMHC	14.9	8.41	0.564	45	0.4	465.206	229.143	0.493	8.41	14.9	34.4	92.4	423.8869047	838.0115415	542.8376978	1013.141255	SSC	1.257142857	1.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.414	45	0	0	NA	7qA3	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	2	1	sgMsh2	cell line
chr7	48198866	48198866	T	C	ENSMUST00000094388.2	NA	ENSMUSG00000070550	missense	M/V	105	Mrgprb4	ENSMUST00000094388.2:c.313A>G	ENSMUSP00000091952.1:p.Met105Val	H-2-Kb	8	8	4	IVTVFAYL	IVTMFAYL	NetMHC	4.79	4.54	0.948	190	0.026	9.955	9.443	0.948	4.54	4.79	7.8	9.3	13.73219621	11.58083836	11.08510982	10.6106014	SSC	2.114285714	2.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.032	190	0	0	NA	7qB4	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	0.137054848	sgMsh2	cell line
chr7	86954408	86954408	T	C	ENSMUST00000170835.3	5	ENSMUSG00000091962	missense	I/T	598	Vmn2r78	ENSMUST00000170835.3:c.1793T>C	ENSMUSP00000126698.2:p.Ile598Thr	H-2-Kb	8	5	7	SSLTFITL	SSLTFIIL	NetMHC	4.96	12.21	2.462	298	0.275	10.548	23.012	2.182	12.21	4.96	17.4	8.6	28.6246378	12.49510759	37.47485835	14.34630303	SSC	1.814285714	1.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.275	298	0	0	NA	7qD3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr7	4628730	4628730	G	A	ENSMUST00000055085.7	1	ENSMUSG00000045282	missense	H/Y	108	Tmem86b	ENSMUST00000055085.7:c.322C>T	ENSMUSP00000060237.6:p.His108Tyr	H-2-Kb	8	5	7	AAFSVAYL	AAFSVAHL	NetMHC	14.01	11.96	0.854	48	0.375	31.802	29.743	0.935	11.96	14.01	19.7	24	41.47056956	39.60408646	39.78689062	40.90157201	SSC	1.757142857	1.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.388	48	0	0	NA	7qA1	chr7-3489139-7297085	4	2	2	0.96	4.11164545	NA	2	1	sgMsh2	cell line
chr7	19643130	19643130	A	C	ENSMUST00000055242.10	1	ENSMUSG00000002981	missense	F/V	170	Clptm1	ENSMUST00000055242.10:c.508T>G	ENSMUSP00000051293.9:p.Phe170Val	H-2-Kb	8	4	8	SIYIHVYV	SIYIHVYF	NetMHC	15.47	62.57	4.045	104	0.212	41.881	121.629	2.904	62.57	15.47	80.8	57.4	162.4575876	35.70590129	166.6249377	48.05515695	SSC	1.657142857	1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.22	104	0	0	NA	7qA3	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	0.942252082	sgMsh2	cell line
chr7	41872661	41872661	T	C	ENSMUST00000171671.2	5	ENSMUSG00000090383	missense	I/V	4	Vmn2r58	ENSMUST00000171671.2:c.10A>G	ENSMUSP00000126966.1:p.Ile4Val	H-2-Kb	8	3	2	WVFTFGLL	WIFTFGLL	SMMPMBEC	16.933	12.071	0.713	212	0.231	20.077	14.348	0.715	14.74	18.24	31.9	25.2	13.95532644	21.91492557	12.07090967	16.93323751	SSC	2.328571429	2.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.231	212	0	0	NA	7qB3	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	0.989364686	sgMsh2	cell line
chr7	80717097	80717097	T	A	ENSMUST00000167377.2	1	ENSMUSG00000030536	missense	I/F	1592	Iqgap1	ENSMUST00000167377.2:c.4774A>T	ENSMUSP00000128278.1:p.Ile1592Phe	H-2-Kb	8	7	5	VIFEFGPT	VIFEIGPT	NetMHC	19.03	1460.12	76.727	125	0.168	28.727	1248.514	43.461	1460.12	19.03	1472.7	69.5	1036.907462	32.86548155	614.8086937	24.58895091	SSC	0.557142857	1.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.182	125	0	0	NA	7qD3	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	0.77949945	sgMsh2	cell line
chr7	80620550	80620550	A	C	ENSMUST00000122255.7	1	ENSMUSG00000030527	missense	S/A	129	Crtc3	ENSMUST00000122255.7:c.385T>G	ENSMUSP00000113540.1:p.Ser129Ala	H-2-Kb	8	7	5	ASYSAQHL	ASYSSQHL	NetMHC	20.45	24.57	1.201	117	0.222	46.405	54.652	1.178	24.57	20.45	46.1	34.5	63.20333573	58.30959165	76.69022289	67.8797134	SSC	-0.571428571	-0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.246	117	0	0	NA	7qD3	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr7	48198866	48198866	T	C	ENSMUST00000094388.2	NA	ENSMUSG00000070550	missense	M/V	105	Mrgprb4	ENSMUST00000094388.2:c.313A>G	ENSMUSP00000091952.1:p.Met105Val	H-2-Kb	8	11	1	VFAYLAGL	MFAYLAGL	NetMHCpan	25.4	78.1	3.075	190	0.026	106.763	240.758	2.255	111.91	40.25	78.1	25.4	369.6068402	173.2766328	510.1994663	240.8463117	SSC	1.757142857	1.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.032	190	0	0	NA	7qB4	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	0.137054848	sgMsh2	cell line
chr7	38267472	38267472	T	A	ENSMUST00000032585.7	1	ENSMUSG00000030423	missense	T/S	62	Pop4	ENSMUST00000032585.7:c.184A>T	ENSMUSP00000032585.6:p.Thr62Ser	H-2-Kb	8	6	6	ILEYFSRL	ILEYFTRL	NetMHCpan	33.3	36.2	1.087	51	0.216	58.969	82.764	1.404	77.07	45.87	36.2	33.3	155.5034397	122.9532464	88.45858744	72.06759014	SSC	0.042857143	0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.214	51	0	0	NA	7qB3	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	0.916554298	sgMsh2	cell line
chr7	56734976	56734976	CT	C	ENSMUST00000068911.12	1	ENSMUSG00000055026	FS	K/X	279	Gabrg3	ENSMUST00000068911.12:c.836del	ENSMUSP00000067632.6:p.Lys279ArgfsTer10	H-2-Kb	8	5	7	VSFWIKRM	VSFWIKKD	NetMHCpan	32.2	11566.3	359.202	125	0.2	88.005	7143.686	81.173	17420.67	52.49	11566.3	32.2	2721.071791	159.8600704	1777.215122	123.5207728	SSC	-0.128571429	0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.211	125	0	0	NA	7qB5	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	0.903705406	sgMsh2	cell line
chr7	29386096	29386096	A	G	ENSMUST00000085809.10	5	ENSMUSG00000030583	missense	V/A	692	Sipa1l3	ENSMUST00000085809.10:c.2075T>C	ENSMUSP00000082965.4:p.Val692Ala	H-2-Kb	8	7	5	IMFHASTL	IMFHVSTL	NetMHCpan	22.2	20.2	0.91	167	0.317	66.789	50.906	0.762	38.17	52.53	20.2	22.2	63.64144033	81.04757034	63.93519587	81.98605697	SSC	0.8	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.312	167	0	0	NA	7qB1	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr7	4628730	4628730	G	A	ENSMUST00000055085.7	1	ENSMUSG00000045282	missense	H/Y	108	Tmem86b	ENSMUST00000055085.7:c.322C>T	ENSMUSP00000060237.6:p.His108Tyr	H-2-Kb	8	9	3	VAYLFYLG	VAHLFYLG	SMM	25.807	303.907	11.776	48	0.375	59.375	717.408	12.083	2140.81	77.28	1012.4	95.7	303.9065077	25.80714726	422.4156501	41.47056956	SSC	1.314285714	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.388	48	0	0	NA	7qA1	chr7-3489139-7297085	4	2	2	0.96	4.11164545	NA	2	1	sgMsh2	cell line
chr7	10714428	10714428	A	T	ENSMUST00000117413.8	1	ENSMUSG00000034087	missense	D/V	186	Nlrp4b	ENSMUST00000117413.8:c.557A>T	ENSMUSP00000113095.1:p.Asp186Val	H-2-Kb	8	4	8	IFYFCCHV	IFYFCCHD	SMM	77.936	520.883	6.683	242	0.186	104.018	3188.951	30.658	5857.02	125.86	6625.8	197.3	520.8827797	77.93633877	467.4552051	82.17505435	SSC	1.471428571	1.514285714	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.179	242	0	0	NA	7qA1	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	0.766650558	sgMsh2	cell line
chr6	149166910	149166910	T	C	ENSMUST00000111535.7	5	ENSMUSG00000068250	missense	N/S	200	Amn1	ENSMUST00000111535.7:c.599A>G	ENSMUSP00000107160.1:p.Asn200Ser	H-2-Kb	8	11	1	SMRYCINL	NMRYCINL	NetMHCpan	101.1	516.9	5.113	134	0.179	283.649	1809.961	6.381	960.79	147.79	516.9	101.1	2665.262568	419.5077612	2659.132635	468.5328006	SSC	0.485714286	0.485714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.191	134	0	0	NA	6qG3	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	sgMsh2	cell line
chr7	24566482	24566482	A	G	ENSMUST00000205573.1	1	ENSMUSG00000051768	missense	I/V	197	Xrcc1	ENSMUST00000205573.1:c.589A>G	ENSMUSP00000146105.1:p.Ile197Val	H-2-Kb	8	4	8	GALFFSRV	GALFFSRI	NetMHCpan	124.6	118.2	0.949	118	0.322	263.463	424.193	1.61	478.78	293.72	118.2	124.6	555.5715525	306.013087	369.6068402	233.2061504	SSC	1.442857143	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.34	118	0	0	NA	7qA3	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	2	1	sgMsh2	cell line
chr7	62379763	62379763	AG	A	ENSMUST00000080403.6	NA	ENSMUSG00000056972	FS	R/X	805	Magel2	ENSMUST00000080403.6:c.2419del	ENSMUSP00000079265.5:p.Ala807HisfsTer67	H-2-Kb	8	48	0	SLPLLMPL	NA	NetMHCpan	360.7	NA	NA	172	0.192	446.234	NA	NA	NA	364.34	NA	360.7	NA	528.128981	NA	604.9785825	SSC	1.985714286	1.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.196	172	0	0	NA	7qC	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	0.839460946	sgMsh2	cell line
chr7	38267472	38267472	T	A	ENSMUST00000032585.7	1	ENSMUSG00000030423	missense	T/S	62	Pop4	ENSMUST00000032585.7:c.184A>T	ENSMUSP00000032585.6:p.Thr62Ser	H-2-Kb	8	5	7	VILEYFSR	VILEYFTR	SMM	209.286	253.361	1.211	51	0.216	412.364	591.486	1.434	722.99	456.82	972.2	944.7	253.3611374	209.2859144	459.9811133	367.908651	SSC	0.142857143	1.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.214	51	0	0	NA	7qB3	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	0.916554298	sgMsh2	cell line
chr7	86811337	86811337	G	A	ENSMUST00000164996.1	5	ENSMUSG00000090949	missense	V/I	624	Vmn2r77	ENSMUST00000164996.1:c.1870G>A	ENSMUSP00000129540.1:p.Val624Ile	H-2-Kb	8	6	6	ETLSYILL	ETLSYVLL	SMMPMBEC	299.737	258.071	0.861	370	0.222	438.719	380.319	0.867	864.89	988.22	444.6	532.5	316.0385059	344.9371732	258.0714726	299.7367541	SSC	1.871428571	1.871428571	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.219	370	0	0	NA	7qD3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	0.937969118	sgMsh2	cell line
chr7	48198866	48198866	T	C	ENSMUST00000094388.2	NA	ENSMUSG00000070550	missense	M/V	105	Mrgprb4	ENSMUST00000094388.2:c.313A>G	ENSMUSP00000091952.1:p.Met105Val	H-2-Kb	8	10	2	TVFAYLAG	TMFAYLAG	SMM	141.169	163.207	1.156	190	0.026	494.819	385.998	0.78	1399.37	1771.25	535	797	163.2074578	141.1692151	236.9954455	192.6371303	SSC	1.814285714	1.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.032	190	0	0	NA	7qB4	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	0.137054848	sgMsh2	cell line
chr7	38267472	38267472	T	A	ENSMUST00000032585.7	1	ENSMUSG00000030423	missense	T/S	62	Pop4	ENSMUST00000032585.7:c.184A>T	ENSMUSP00000032585.6:p.Thr62Ser	H-2-Kb	9	5	7	VILEYFSRL	VILEYFTRL	NetMHC	3.73	4.56	1.223	51	0.216	11.527	13.92	1.208	4.56	3.73	4.6	4.3	23.39429705	18.75469475	23.24074256	20.19528563	SSC	0.042857143	1.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.214	51	0	0	NA	7qB3	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	0.916554298	sgMsh2	cell line
chr6	149166910	149166910	T	C	ENSMUST00000111535.7	5	ENSMUSG00000068250	missense	N/S	200	Amn1	ENSMUST00000111535.7:c.599A>G	ENSMUSP00000107160.1:p.Asn200Ser	H-2-Kb	9	10	2	ISMRYCINL	INMRYCINL	NetMHC	5.23	8.07	1.543	134	0.179	46.523	52.477	1.128	8.07	5.23	6.8	5.9	113.0082111	106.1964502	96.88354023	87.14651012	SSC	0.485714286	0.971428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.191	134	0	0	NA	6qG3	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	sgMsh2	cell line
chr7	48198866	48198866	T	C	ENSMUST00000094388.2	NA	ENSMUSG00000070550	missense	M/V	105	Mrgprb4	ENSMUST00000094388.2:c.313A>G	ENSMUSP00000091952.1:p.Met105Val	H-2-Kb	9	10	2	TVFAYLAGL	TMFAYLAGL	NetMHC	6.26	6.35	1.014	190	0.026	28.731	15.375	0.535	6.35	6.26	6.7	6.5	24.04971865	52.13267383	25.07552301	50.96241499	SSC	1.757142857	1.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.032	190	0	0	NA	7qB4	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	0.137054848	sgMsh2	cell line
chr7	4628730	4628730	G	A	ENSMUST00000055085.7	1	ENSMUSG00000045282	missense	H/Y	108	Tmem86b	ENSMUST00000055085.7:c.322C>T	ENSMUSP00000060237.6:p.His108Tyr	H-2-Kb	9	9	3	VAYLFYLGA	VAHLFYLGA	NetMHC	8.59	79.22	9.222	48	0.375	20.803	109.661	5.272	79.22	8.59	82.2	17.5	137.1229033	24.10515897	164.1534444	30.21690645	SSC	1.314285714	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.388	48	0	0	NA	7qA1	chr7-3489139-7297085	4	2	2	0.96	4.11164545	NA	2	1	sgMsh2	cell line
chr7	86811337	86811337	G	A	ENSMUST00000164996.1	5	ENSMUSG00000090949	missense	V/I	624	Vmn2r77	ENSMUST00000164996.1:c.1870G>A	ENSMUSP00000129540.1:p.Val624Ile	H-2-Kb	9	8	4	LSYILLTSL	LSYVLLTSL	NetMHCpan	26.5	23.3	0.879	370	0.222	55.636	50.423	0.906	24.09	28.24	23.3	26.5	76.75558746	92.92017092	84.382036	83.03286055	SSC	1.871428571	1.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.219	370	0	0	NA	7qD3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	0.937969118	sgMsh2	cell line
chr7	62379763	62379763	AG	A	ENSMUST00000080403.6	NA	ENSMUSG00000056972	FS	R/X	805	Magel2	ENSMUST00000080403.6:c.2419del	ENSMUSP00000079265.5:p.Ala807HisfsTer67	H-2-Kb	9	47	0	SSLPLLMPL	NA	NetMHC	37.18	NA	NA	172	0.192	148.607	NA	NA	NA	37.18	NA	73.8	NA	223.4138023	NA	273.6843727	SSC	1.985714286	1.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.196	172	0	0	NA	7qC	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	0.839460946	sgMsh2	cell line
chr7	25630422	25630422	G	T	ENSMUST00000205808.1	5	ENSMUSG00000060376	missense	P/H	92	Bckdha	ENSMUST00000205808.1:c.275C>A	ENSMUSP00000146018.1:p.Pro92His	H-2-Kb	9	10	5	RSWKHLSRL	RSWKPLSRL	NetMHCpan	40.3	284.5	7.06	29	0.207	90.509	379.431	4.192	202.73	43.85	284.5	40.3	474.3621186	146.9298381	571.8077009	137.1671136	SSC	-0.814285714	-0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.249	29	0	0	NA	7qA3	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr7	10714428	10714428	A	T	ENSMUST00000117413.8	1	ENSMUSG00000034087	missense	D/V	186	Nlrp4b	ENSMUST00000117413.8:c.557A>T	ENSMUSP00000113095.1:p.Asp186Val	H-2-Kb	9	3	9	YIFYFCCHV	YIFYFCCHD	NetMHC	65.43	3097.29	47.337	242	0.186	158.009	1817.316	11.501	3097.29	65.43	4922.7	150.4	471.0966327	165.6189397	537.3410257	201.0249672	SSC	1.471428571	1.785714286	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.179	242	0	0	NA	7qA1	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	0.766650558	sgMsh2	cell line
chr7	29386096	29386096	A	G	ENSMUST00000085809.10	5	ENSMUSG00000030583	missense	V/A	692	Sipa1l3	ENSMUST00000085809.10:c.2075T>C	ENSMUSP00000082965.4:p.Val692Ala	H-2-Kb	9	7	5	IMFHASTLL	IMFHVSTLL	NetMHCpan	34.3	42.3	1.233	167	0.317	73.196	96.94	1.324	95	76.39	42.3	34.3	98.88035114	70.00192775	121.4087534	108.2056654	SSC	1.071428571	1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.312	167	0	0	NA	7qB1	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr7	86230157	86230157	G	T	ENSMUST00000165771.1	5	ENSMUSG00000091239	missense	L/I	312	Vmn2r76	ENSMUST00000165771.1:c.934C>A	ENSMUSP00000127309.1:p.Leu312Ile	H-2-Kb	9	11	1	IFNSFHGTL	LFNSFHGTL	NetMHC	90.6	323.06	3.566	196	0.24	213.074	517.132	2.427	323.06	90.6	536.4	171.4	497.86317	254.7475407	565.2622723	289.2344371	SSC	-0.285714286	0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.237	196	0	0	NA	7qD3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr7	41872661	41872661	T	C	ENSMUST00000171671.2	5	ENSMUSG00000090383	missense	I/V	4	Vmn2r58	ENSMUST00000171671.2:c.10A>G	ENSMUSP00000126966.1:p.Ile4Val	H-2-Kb	9	1	4	MFWVFTFGL	MFWIFTFGL	NetMHC	111.05	130.99	1.18	212	0.231	219.588	235.322	1.072	130.99	111.05	717.3	597.1	205.6411387	169.8673846	265.0025177	269.3084622	SSC	1.657142857	1.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.231	212	0	0	NA	7qB3	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	0.989364686	sgMsh2	cell line
chr7	4628730	4628730	G	A	ENSMUST00000055085.7	1	ENSMUSG00000045282	missense	H/Y	108	Tmem86b	ENSMUST00000055085.7:c.322C>T	ENSMUSP00000060237.6:p.His108Tyr	H-2-Kb	9	7	5	FSVAYLFYL	FSVAHLFYL	NetMHC	117.61	191.04	1.624	48	0.375	191.366	229.821	1.201	191.04	117.61	177.5	167.4	268.6024688	215.332707	304.2636004	242.2423104	SSC	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.388	48	0	0	NA	7qA1	chr7-3489139-7297085	4	2	2	0.96	4.11164545	NA	2	1	sgMsh2	cell line
chr7	48198866	48198866	T	C	ENSMUST00000094388.2	NA	ENSMUSG00000070550	missense	M/V	105	Mrgprb4	ENSMUST00000094388.2:c.313A>G	ENSMUSP00000091952.1:p.Met105Val	H-2-Kb	9	7	5	LIVTVFAYL	LIVTMFAYL	NetMHC	120.49	29.31	0.243	190	0.026	294.269	109.493	0.372	29.31	120.49	58.2	138.5	174.2248102	563.7804345	160.7866549	450.0388435	SSC	2.114285714	2.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.032	190	0	0	NA	7qB4	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	0.137054848	sgMsh2	cell line
chr7	64318302	64318302	T	C	ENSMUST00000032736.10	1	ENSMUSG00000030522	missense	M/T	293	Mtmr10	ENSMUST00000032736.10:c.878T>C	ENSMUSP00000032736.4:p.Met293Thr	H-2-Kb	9	6	6	SALVRTALI	SALVRMALI	NetMHC	196.41	93.2	0.475	151	0.205	265.638	197.08	0.742	93.2	196.41	193.2	363	200.9601749	246.6664026	201.0249672	284.6098982	SSC	1.842857143	1.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.21	151	0	0	NA	7qC	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	0.899422442	sgMsh2	cell line
chr7	41872661	41872661	T	C	ENSMUST00000171671.2	5	ENSMUSG00000090383	missense	I/V	4	Vmn2r58	ENSMUST00000171671.2:c.10A>G	ENSMUSP00000126966.1:p.Ile4Val	H-2-Kb	9	2	3	FWVFTFGLL	FWIFTFGLL	SMM	188.847	129.155	0.684	212	0.231	303.148	213.145	0.703	203.83	283.26	477.7	743.9	129.1546361	188.8469608	222.4590099	323.0353127	SSC	2.328571429	2.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.231	212	0	0	NA	7qB3	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	0.989364686	sgMsh2	cell line
chr7	86585643	86585643	G	A	ENSMUST00000215365.1	3	ENSMUSG00000059319	missense	A/T	123	Olfr295	ENSMUST00000215365.1:c.367G>A	ENSMUSP00000150377.1:p.Ala123Thr	H-2-Kb	9	4	8	MAQDRYVTI	MAQDRYVAI	SMMPMBEC	399.255	370.894	0.929	431	0.209	423.855	403.247	0.951	327.37	419.11	435.6	428.6	454.0566075	482.0698829	370.8941642	399.2546657	SSC	-0.685714286	-0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.21	431	0	0	NA	7qD3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	0.899422442	sgMsh2	cell line
chr7	45897436	45897436	C	T	ENSMUST00000069772.15	1	ENSMUSG00000002781	missense	L/F	9	Tmem143	ENSMUST00000069772.15:c.25C>T	ENSMUSP00000070405.7:p.Leu9Phe	H-2-Kb	9	1	9	MTVARWLRF	MTVARWLRL	SMMPMBEC	346.937	200.563	0.578	61	0.213	447.198	172.436	0.386	144.31	476.98	90.6	447.6	264.9171047	446.7967444	200.5626226	346.9365057	SSC	0.385714286	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	61	0	0	NA	7qB3	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	0.97223283	sgMsh2	cell line
chr7	4628730	4628730	G	A	ENSMUST00000055085.7	1	ENSMUSG00000045282	missense	H/Y	108	Tmem86b	ENSMUST00000055085.7:c.322C>T	ENSMUSP00000060237.6:p.His108Tyr	H-2-Kb	9	10	2	AYLFYLGAF	AHLFYLGAF	SMMPMBEC	401.098	529.968	1.321	48	0.375	478.522	581.999	1.216	521.98	499.84	754.5	1485.8	634.0302809	457.2039776	529.9684305	401.0975415	SSC	1.9	1.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.388	48	0	0	NA	7qA1	chr7-3489139-7297085	4	2	2	0.96	4.11164545	NA	2	1	sgMsh2	cell line
chr7	45091511	45091511	C	A	ENSMUST00000019683.10	1	ENSMUSG00000019539	missense	A/S	58	Rcn3	ENSMUST00000019683.10:c.172G>T	ENSMUSP00000019683.3:p.Ala58Ser	H-2-Kb	9	5	7	FQYDHESFL	FQYDHEAFL	SMM	229.145	213.85	0.933	73	0.288	356.326	221.271	0.621	196.89	536.95	277.2	442.1	213.850367	229.1447967	228.6914879	270.5515336	SSC	-0.814285714	-0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.299	73	0	0	NA	7qB3	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr7	36769746	36769746	CA	C	ENSMUST00000021641.7	1	ENSMUSG00000021217	FS	K/X	387	Tshz3	ENSMUST00000021641.7:c.1161del	ENSMUSP00000021641.6:p.Lys387AsnfsTer19	H-2-Kb	9	19	0	MTRSRSSQL	NA	SMM	259.484	NA	NA	84	0.274	486.891	NA	NA	NA	640.93	NA	1369.8	NA	259.483651	NA	332.8511027	SSC	-1.585714286	-1.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.282	84	0	0	NA	7qB2	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr7	86268842	86268842	T	A	ENSMUST00000217724.1	5	ENSMUSG00000057540	missense	N/Y	316	Olfr310	ENSMUST00000217724.1:c.946A>T	ENSMUSP00000151989.1:p.Asn316Tyr	H-2-Kb	9	6	6	FEYKRYIYF	FEYKRNIYF	SMM	101.417	750.084	7.396	125	0.288	429.431	2555.997	5.952	4361.91	754.57	5359.6	910.5	750.0841699	101.4168226	685.8829388	104.2917608	SSC	-0.714285714	-0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.291	125	0	0	NA	7qD3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr7	4628730	4628730	G	A	ENSMUST00000055085.7	1	ENSMUSG00000045282	missense	H/Y	108	Tmem86b	ENSMUST00000055085.7:c.322C>T	ENSMUSP00000060237.6:p.His108Tyr	H-2-Kb	10	9	3	VAYLFYLGAF	VAHLFYLGAF	NetMHC	24.17	187.85	7.772	48	0.375	384.486	1494.672	3.887	187.85	24.17	197.7	43.1	3616.845854	964.5616704	2791.643777	725.8719263	SSC	1.9	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.388	48	0	0	NA	7qA1	chr7-3489139-7297085	4	2	2	0.96	4.11164545	NA	2	1	sgMsh2	cell line
chr7	112894458	112894458	A	G	ENSMUST00000059768.16	1	ENSMUSG00000055320	missense	I/M	397	Tead1	ENSMUST00000059768.16:c.1191A>G	ENSMUSP00000060671.9:p.Ile397Met	H-2-Db	9	4	8	SVLENFTML	SVLENFTIL	NetMHCpan	56.2	25.6	0.456	96	0.167	93.041	86.275	0.927	63.25	79.76	25.6	56.2	109.2999592	106.3212319	142.7479894	150.5116095	SSC	0.657142857	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.189	96	0	0	NA	7qF1	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	0.809480198	sgMsh2	cell line
chr7	103220304	103220304	G	T	ENSMUST00000214051.1	5	ENSMUSG00000073954	missense	K/N	195	Olfr594	ENSMUST00000214051.1:c.585G>T	ENSMUSP00000149847.1:p.Lys195Asn	H-2-Db	9	7	5	CANINVNII	CANIKVNII	NetMHC	90.81	15924.06	175.356	220	0.245	165.924	8128.239	48.988	15924.06	90.81	8571.9	131.6	7684.577591	236.3850465	6723.106641	200.2488359	SSC	1.028571429	1.028571429	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.242	220	0	0	NA	7qE3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr7	140336044	140336044	C	A	ENSMUST00000214858.1	5	ENSMUSG00000062782	missense	L/M	61	Olfr527	ENSMUST00000214858.1:c.181C>A	ENSMUSP00000149080.1:p.Leu61Met	H-2-Db	9	9	3	FFMVNLAIV	FFLVNLAIV	SMM	105.833	95.856	0.906	286	0.287	165.454	168.878	1.021	197.29	176.89	1124.6	642.8	95.85615401	105.8327302	140.4656069	154.0174753	SSC	2.414285714	2.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.285	286	0	0	NA	7qF4	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr7	133723166	133723166	A	C	ENSMUST00000033290.11	1	ENSMUSG00000030986	missense	V/G	594	Dhx32	ENSMUST00000033290.11:c.1781T>G	ENSMUSP00000033290.5:p.Val594Gly	H-2-Db	9	4	8	SALRMADGI	SALRMADVI	NetMHCpan	262.3	20.8	0.079	78	0.038	356.976	43.554	0.122	10.31	365.96	20.8	262.3	73.04996295	403.2923648	66.30862159	347.9925929	SSC	0.514285714	0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.051	78	0	0	NA	7qF3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	0.218431165	sgMsh2	cell line
chr7	108066532	108066532	T	C	ENSMUST00000071658.2	NA	ENSMUSG00000063120	missense	M/V	89	Olfr480	ENSMUST00000071658.2:c.265A>G	ENSMUSP00000071583.2:p.Met89Val	H-2-Kb	8	11	1	VYLFLSHL	MYLFLSHL	NetMHCpan	13.1	28.9	2.206	264	0.239	134.327	287.934	2.144	52.58	23.33	28.9	13.1	523.2870654	245.323979	556.8522772	262.8693795	SSC	1.271428571	1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.249	264	0	0	NA	7qE3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr7	104579774	104579774	C	A	ENSMUST00000217466.1	5	ENSMUSG00000073926	missense	L/I	43	Olfr653	ENSMUST00000217466.1:c.127C>A	ENSMUSP00000149192.1:p.Leu43Ile	H-2-Kb	8	7	5	SMYIIALV	SMYILALV	NetMHC	36.14	15.33	0.424	158	0.222	160.928	65.748	0.409	15.33	36.14	41.6	75.4	89.89592386	268.9923939	105.1332282	246.456343	SSC	2.771428571	2.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.218	158	0	0	NA	7qE3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	0.933686154	sgMsh2	cell line
chr7	121500719	121500719	T	C	ENSMUST00000084628.4	1	ENSMUSG00000046321	missense	Y/H	263	Hs3st2	ENSMUST00000084628.4:c.787T>C	ENSMUSP00000081678.3:p.Tyr263His	H-2-Kb	8	7	5	SWLRHFPL	SWLRYFPL	NetMHC	37.55	13.18	0.351	88	0.261	82.172	20.056	0.244	13.18	37.55	43.5	118.3	20.21808416	78.29607656	19.89481935	86.04784535	SSC	0.028571429	0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.26	88	0	0	NA	7qF2	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr8	3851259	3851259	T	C	ENSMUST00000033888.4	1	ENSMUSG00000040197	missense	S/G	132	Cd209e	ENSMUST00000033888.4:c.394A>G	ENSMUSP00000033888.4:p.Ser132Gly	H-2-Kb	8	10	2	NGYTWMGL	NSYTWMGL	NetMHC	74.4	17.07	0.229	185	0.27	112.328	35.265	0.314	17.07	74.4	26.4	96.5	48.05515695	143.1330745	44.13061706	128.1563117	SSC	0.285714286	0.285714286	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.265	185	0	0	NA	8qA1.1	chr8-3154030-57551501	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr7	103561109	103561109	G	A	ENSMUST00000215673.1	5	ENSMUSG00000073947	missense	D/N	211	Olfr615	ENSMUST00000215673.1:c.631G>A	ENSMUSP00000150166.1:p.Asp211Asn	H-2-Kb	8	10	2	VNFLLIAI	VDFLLIAI	NetMHCpan	40	2359.1	58.977	255	0.192	96.14	1509.699	15.703	3768.11	92.57	2359.1	40	660.2980276	99.71029474	655.752568	115.2762924	SSC	2.528571429	2.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.198	255	0	0	NA	7qE3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	0.848026874	sgMsh2	cell line
chr7	140336044	140336044	C	A	ENSMUST00000214858.1	5	ENSMUSG00000062782	missense	L/M	61	Olfr527	ENSMUST00000214858.1:c.181C>A	ENSMUSP00000149080.1:p.Leu61Met	H-2-Kb	8	7	5	MYFFMVNL	MYFFLVNL	NetMHCpan	54.1	64	1.183	286	0.287	88.007	92.533	1.051	151.9	127.61	64	54.1	87.8496428	84.86722465	97.21650414	91.14650073	SSC	1.528571429	1.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.285	286	0	0	NA	7qF4	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr7	127905762	127905762	T	C	ENSMUST00000071056.13	1	ENSMUSG00000030802	missense	I/T	130	Bckdk	ENSMUST00000071056.13:c.389T>C	ENSMUSP00000070345.7:p.Ile130Thr	H-2-Kb	8	10	2	YTRAFQKL	YIRAFQKL	NetMHCpan	121.7	137.9	1.133	224	0.219	139.122	142.352	1.023	95.73	131.44	137.9	121.7	146.8047136	146.8047136	188.2521739	180.6092545	SSC	-0.6	-0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.23	224	0	0	NA	7qF3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	0.985081722	sgMsh2	cell line
chr7	105555462	105555462	AC	A	ENSMUST00000046983.9	1	ENSMUSG00000037049	FS	P/X	183	Smpd1	ENSMUST00000046983.9:c.551del	ENSMUSP00000042187.8:p.Pro184GlnfsTer72	H-2-Kb	8	47	0	VQIHFAAA	NA	SMMPMBEC	150.918	NA	NA	142	0.296	175.233	NA	NA	NA	165.65	NA	488.7	NA	184.8161845	NA	150.9176382	SSC	0.857142857	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.299	142	0	0	NA	7qE3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr7	105555462	105555462	AC	A	ENSMUST00000046983.9	1	ENSMUSG00000037049	FS	P/X	183	Smpd1	ENSMUST00000046983.9:c.551del	ENSMUSP00000042187.8:p.Pro184GlnfsTer72	H-2-Kb	8	38	0	STWRAQTL	NA	NetMHCpan	140.5	NA	NA	142	0.296	249.349	NA	NA	NA	259.51	NA	140.5	NA	239.1883374	NA	262.2647967	SSC	-0.671428571	-0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.299	142	0	0	NA	7qE3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr7	108714066	108714066	C	A	ENSMUST00000074730.3	NA	ENSMUSG00000056946	missense	L/M	238	Olfr512	ENSMUST00000074730.3:c.712C>A	ENSMUSP00000074291.4:p.Leu238Met	H-2-Kb	8	6	6	ILFTIMRM	ILFTILRM	NetMHCpan	74.1	112.6	1.52	352	0.227	290.124	605.685	2.088	729.71	264.21	112.6	74.1	758.1235717	462.1042896	481.6593553	316.0385059	SSC	1.385714286	1.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.229	352	0	0	NA	7qE3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	0.980798758	sgMsh2	cell line
chr7	106886521	106886521	G	T	ENSMUST00000213918.1	5	ENSMUSG00000109354	missense	L/I	99	Olfr706	ENSMUST00000213918.1:c.295C>A	ENSMUSP00000150075.1:p.Leu99Ile	H-2-Kb	8	11	1	IQMALALM	LQMALALM	NetMHCpan	225.8	1084.7	4.804	256	0.223	488.486	2680.818	5.488	2769.01	369.2	1084.7	225.8	3653.759857	770.4420888	2592.626764	607.7710368	SSC	1.642857143	2.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.223	256	0	0	NA	7qE3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	0.955100974	sgMsh2	cell line
chr7	126998574	126998574	A	G	ENSMUST00000165096.8	1	ENSMUSG00000030681	missense	V/A	124	Mvp	ENSMUST00000165096.8:c.371T>C	ENSMUSP00000127250.2:p.Val124Ala	H-2-Kb	8	5	7	ITPLQVAL	ITPLQVVL	SMM	208.324	490.614	2.355	139	0.295	361.112	827.469	2.291	2006.7	401.05	932.6	459.9	490.6140712	208.324333	722.337231	321.1737185	SSC	1.114285714	1.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.28	139	0	0	NA	7qF3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr7	112894458	112894458	A	G	ENSMUST00000059768.16	1	ENSMUSG00000055320	missense	I/M	397	Tead1	ENSMUST00000059768.16:c.1191A>G	ENSMUSP00000060671.9:p.Ile397Met	H-2-Kb	8	5	7	VLENFTML	VLENFTIL	SMMPMBEC	161.711	473.958	2.931	96	0.167	278.293	630.111	2.264	1938.31	461.24	683.8	334.9	576.4212727	221.6868845	473.9581548	161.7111628	SSC	0.657142857	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.189	96	0	0	NA	7qF1	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	0.809480198	sgMsh2	cell line
chr7	108066532	108066532	T	C	ENSMUST00000071658.2	NA	ENSMUSG00000063120	missense	M/V	89	Olfr480	ENSMUST00000071658.2:c.265A>G	ENSMUSP00000071583.2:p.Met89Val	H-2-Kb	8	8	4	HTPVYLFL	HTPMYLFL	NetMHCpan	245.7	219.6	0.894	264	0.239	262.002	292.515	1.116	407.26	463.94	219.6	245.7	316.0385059	266.5262568	268.9923939	257.4779247	SSC	1.571428571	1.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.249	264	0	0	NA	7qE3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr7	103561109	103561109	G	A	ENSMUST00000215673.1	5	ENSMUSG00000073947	missense	D/N	211	Olfr615	ENSMUST00000215673.1:c.631G>A	ENSMUSP00000150166.1:p.Asp211Asn	H-2-Kb	8	6	6	FSFGVNFL	FSFGVDFL	SMM	150.571	284.931	1.892	255	0.192	316.091	920.531	2.912	2167.05	614.28	1461.1	439.1	284.9311953	150.5705372	379.9618556	193.0812048	SSC	1.271428571	1.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.198	255	0	0	NA	7qE3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	0.848026874	sgMsh2	cell line
chr8	12812332	12812332	A	G	ENSMUST00000091237.11	1	ENSMUSG00000031441	missense	I/M	61	Atp11a	ENSMUST00000091237.11:c.183A>G	ENSMUSP00000088779.5:p.Ile61Met	H-2-Kb	8	8	4	WNFMPKNL	WNFIPKNL	SMMPMBEC	260.459	296.306	1.138	190	0.3	332.995	416.103	1.25	868.92	618.87	535.9	372.4	268.9923939	293.5891489	296.3056959	260.4593785	SSC	-0.571428571	-0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.287	190	0	0	NA	8qA1.1	chr8-3154030-57551501	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr7	105368670	105368670	A	C	ENSMUST00000217827.1	NA	ENSMUSG00000073906	missense	M/L	115	Olfr692	ENSMUST00000217827.1:c.343A>C	ENSMUSP00000151295.1:p.Met115Leu	H-2-Kb	8	9	3	IQLFFVHA	IQMFFVHA	SMMPMBEC	284.931	375.612	1.318	153	0.235	431.481	503.096	1.166	956.99	1001.03	255.3	495.9	630.579721	367.0624846	375.6124682	284.9311953	SSC	1.242857143	1.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.253	153	0	0	NA	7qE3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr7	119578155	119578155	G	T	ENSMUST00000098084.10	1	ENSMUSG00000030945	missense	A/S	298	Acsm2	ENSMUST00000098084.10:c.892G>T	ENSMUSP00000095690.3:p.Ala298Ser	H-2-Kb	8	6	6	MNILGSFL	MNILGAFL	NetMHCpan	402.6	189.5	0.471	171	0.228	492.911	212.831	0.432	522.72	1647.75	189.5	402.6	220.6683258	498.5859086	204.9934573	487.2367077	SSC	1.457142857	1.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.222	171	0	0	NA	7qF2	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	0.95081801	sgMsh2	cell line
chr7	127051630	127051630	A	G	ENSMUST00000205424.1	2	ENSMUSG00000049350	missense	V/A	62	Zg16	ENSMUST00000205424.1:c.185T>C	ENSMUSP00000145876.1:p.Val62Ala	H-2-Kb	9	5	7	VNRYYIAGL	VNRYYIVGL	NetMHC	8.72	32.43	3.719	138	0.232	35.986	58.881	1.636	32.43	8.72	19.1	12.8	85.33162183	59.17114865	94.67820161	69.86344547	SSC	0.371428571	0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.218	138	0	0	NA	7qF3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	0.933686154	sgMsh2	cell line
chr7	108066532	108066532	T	C	ENSMUST00000071658.2	NA	ENSMUSG00000063120	missense	M/V	89	Olfr480	ENSMUST00000071658.2:c.265A>G	ENSMUSP00000071583.2:p.Met89Val	H-2-Kb	9	10	2	PVYLFLSHL	PMYLFLSHL	SMM	27.74	12.797	0.461	264	0.239	31.825	25.891	0.814	28.38	30.85	39.4	32.8	12.79705392	27.74022632	23.40183969	47.56089297	SSC	1.271428571	1.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.249	264	0	0	NA	7qE3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr7	112894458	112894458	A	G	ENSMUST00000059768.16	1	ENSMUSG00000055320	missense	I/M	397	Tead1	ENSMUST00000059768.16:c.1191A>G	ENSMUSP00000060671.9:p.Ile397Met	H-2-Kb	9	4	8	SVLENFTML	SVLENFTIL	NetMHC	37.75	108.04	2.862	96	0.167	129.396	187.961	1.453	108.04	37.75	126.4	65.1	249.5226649	193.6912491	309.920283	217.3952246	SSC	0.657142857	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.189	96	0	0	NA	7qF1	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	0.809480198	sgMsh2	cell line
chr7	103561109	103561109	G	A	ENSMUST00000215673.1	5	ENSMUSG00000073947	missense	D/N	211	Olfr615	ENSMUST00000215673.1:c.631G>A	ENSMUSP00000150166.1:p.Asp211Asn	H-2-Kb	9	4	8	VIFSFGVNF	VIFSFGVDF	NetMHCpan	42.3	148.3	3.506	255	0.192	60.077	160.513	2.672	163.95	45.49	148.3	42.3	157.0760603	74.66378462	165.6723376	97.55510484	SSC	1.128571429	2.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.198	255	0	0	NA	7qE3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	0.848026874	sgMsh2	cell line
chr8	12812332	12812332	A	G	ENSMUST00000091237.11	1	ENSMUSG00000031441	missense	I/M	61	Atp11a	ENSMUST00000091237.11:c.183A>G	ENSMUSP00000088779.5:p.Ile61Met	H-2-Kb	9	3	9	SKYTFWNFM	SKYTFWNFI	NetMHC	57.07	114.61	2.008	190	0.3	94.704	167.079	1.764	114.61	57.07	120.8	76.4	213.3585248	113.0082111	230.8075441	135.2851103	SSC	0.157142857	0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.287	190	0	0	NA	8qA1.1	chr8-3154030-57551501	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr7	118543426	118543426	T	C	ENSMUST00000044195.5	1	ENSMUSG00000042246	missense	S/G	580	Tmc7	ENSMUST00000044195.5:c.1738A>G	ENSMUSP00000046927.4:p.Ser580Gly	H-2-Kb	9	4	8	IFYVKELGL	IFYVKELSL	SMM	58.359	65.48	1.122	77	0.286	68.619	75.602	1.102	72.09	59.39	106.1	128.9	65.48020042	58.35929005	79.11339102	77.84845538	SSC	0.385714286	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.291	77	0	0	NA	7qF1	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr7	104084873	104084873	G	A	ENSMUST00000057104.6	NA	ENSMUSG00000051340	missense	S/F	69	Olfr645	ENSMUST00000057104.6:c.206C>T	ENSMUSP00000062821.3:p.Ser69Phe	H-2-Kb	9	7	5	LSLLFVNDL	LSLLSVNDL	NetMHC	62.61	2365.54	37.782	161	0.174	209.242	1943.236	9.287	2365.54	62.61	2848.4	144.8	1520.932709	297.9270937	1291.962773	273.6843727	SSC	1.628571429	2.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.181	161	0	0	NA	7qE3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	0.775216486	sgMsh2	cell line
chr7	140336044	140336044	C	A	ENSMUST00000214858.1	5	ENSMUSG00000062782	missense	L/M	61	Olfr527	ENSMUST00000214858.1:c.181C>A	ENSMUSP00000149080.1:p.Leu61Met	H-2-Kb	9	6	6	PMYFFMVNL	PMYFFLVNL	SMM	27.046	20.659	0.764	286	0.287	58.129	61.772	1.063	94.62	83.88	106.9	97.4	20.65903351	27.04643321	28.92344371	32.3779986	SSC	1.528571429	1.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.285	286	0	0	NA	7qF4	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr7	105368670	105368670	A	C	ENSMUST00000217827.1	NA	ENSMUSG00000073906	missense	M/L	115	Olfr692	ENSMUST00000217827.1:c.343A>C	ENSMUSP00000151295.1:p.Met115Leu	H-2-Kb	9	9	3	IQLFFVHAL	IQMFFVHAL	NetMHCpan	43.2	24.8	0.574	153	0.235	275.107	251.953	0.916	112.84	125.35	24.8	43.2	415.0591573	450.9309038	391.0659467	424.864065	SSC	2.285714286	2.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.253	153	0	0	NA	7qE3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr7	117549082	117549082	T	C	ENSMUST00000032892.6	1	ENSMUSG00000030657	missense	F/L	294	Xylt1	ENSMUST00000032892.6:c.880T>C	ENSMUSP00000032892.5:p.Phe294Leu	H-2-Kb	9	3	9	LMPEKVARL	LMPEKVARF	NetMHC	173.46	659.31	3.801	104	0.24	295.639	583.799	1.975	659.31	173.46	988.5	403.9	508.2881677	301.3769268	501.4758232	289.9011913	SSC	-0.528571429	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	104	0	0	NA	7qF1	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr7	102877647	102877647	T	G	ENSMUST00000098216.1	NA	ENSMUSG00000073965	missense	S/A	176	Olfr568	ENSMUST00000098216.1:c.526T>G	ENSMUSP00000095818.1:p.Ser176Ala	H-2-Kb	9	8	4	LSHAYCYHV	LSHSYCYHV	NetMHC	182.81	126.32	0.691	202	0.228	404.02	295.538	0.731	126.32	182.81	205.5	217.5	385.5760057	636.9568317	462.6472659	590.540925	SSC	-0.071428571	0.214285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe	3	0.237	202	0	0	NA	7qE3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr7	103470347	103470347	T	A	ENSMUST00000213546.2	NA	ENSMUSG00000073948	missense	Y/N	103	Olfr608	ENSMUST00000213546.2:c.307T>A	ENSMUSP00000150595.1:p.Tyr103Asn	H-2-Kb	9	8	4	TQMNFIHTL	TQMYFIHTL	NetMHCpan	63.2	43.4	0.687	253	0.249	469.385	394.17	0.84	228.44	190.17	43.4	63.2	559.8993973	800.0368662	602.9065471	748.6003055	SSC	0.8	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	253	0	0	NA	7qE3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr7	121500719	121500719	T	C	ENSMUST00000084628.4	1	ENSMUSG00000046321	missense	Y/H	263	Hs3st2	ENSMUST00000084628.4:c.787T>C	ENSMUSP00000081678.3:p.Tyr263His	H-2-Kb	9	6	6	ESWLRHFPL	ESWLRYFPL	NetMHCpan	163.3	62.2	0.381	88	0.261	193.474	60.222	0.311	49.75	201.06	62.2	163.3	69.20062231	242.1642333	58.24383998	185.8874201	SSC	0.028571429	0.028571429	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.26	88	0	0	NA	7qF2	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr7	135152261	135152261	C	T	ENSMUST00000084488.4	5	ENSMUSG00000058325	missense	A/V	1589	Dock1	ENSMUST00000084488.4:c.4766C>T	ENSMUSP00000081531.4:p.Ala1589Val	H-2-Kb	9	11	1	VLRPFHERM	ALRPFHERM	NetMHCpan	84.2	315.4	3.746	92	0.326	423.221	1393.102	3.292	1094.79	233.74	315.4	84.2	1897.186388	638.4251688	1691.414308	612.7029904	SSC	-1.8	-0.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.315	92	0	0	NA	7qF3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr7	121500719	121500719	T	C	ENSMUST00000084628.4	1	ENSMUSG00000046321	missense	Y/H	263	Hs3st2	ENSMUST00000084628.4:c.787T>C	ENSMUSP00000081678.3:p.Tyr263His	H-2-Kb	9	7	5	SWLRHFPLA	SWLRYFPLA	SMM	266.14	213.359	0.802	88	0.261	344.75	238.779	0.693	209.94	300.23	264.2	640.1	213.3585248	266.1399065	309.920283	389.2691619	SSC	0.414285714	0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.26	88	0	0	NA	7qF2	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr7	102877647	102877647	T	G	ENSMUST00000098216.1	NA	ENSMUSG00000073965	missense	S/A	176	Olfr568	ENSMUST00000098216.1:c.526T>G	ENSMUSP00000095818.1:p.Ser176Ala	H-2-Kb	9	10	2	HAYCYHVDV	HSYCYHVDV	NetMHCpan	221.9	122.4	0.552	202	0.228	291.336	184.978	0.635	148.52	303.9	122.4	221.9	306.2739079	371.6293451	221.4369036	278.7725451	SSC	0.228571429	0.228571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe	3	0.237	202	0	0	NA	7qE3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr7	140336044	140336044	C	A	ENSMUST00000214858.1	5	ENSMUSG00000062782	missense	L/M	61	Olfr527	ENSMUST00000214858.1:c.181C>A	ENSMUSP00000149080.1:p.Leu61Met	H-2-Kb	9	4	8	HTPMYFFMV	HTPMYFFLV	NetMHCpan	201.1	175.6	0.873	286	0.287	470.61	422.008	0.897	322.69	307.19	175.6	201.1	521.3267383	634.0302809	641.5787927	693.8250889	SSC	1.528571429	1.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.285	286	0	0	NA	7qF4	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr7	128682320	128682320	T	C	ENSMUST00000043138.12	1	ENSMUSG00000042105	missense	Y/H	548	Inpp5f	ENSMUST00000043138.12:c.1642T>C	ENSMUSP00000045910.6:p.Tyr548His	H-2-Kb	9	8	4	ANRHYLSRF	ANRYYLSRF	SMM	213.359	159.628	0.748	193	0.264	273.396	175.803	0.643	148.49	318.1	293.9	583.8	159.628341	213.3585248	191.9773533	228.6914879	SSC	-1.1	-1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.266	193	0	0	NA	7qF3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr7	108323210	108323210	TC	T	ENSMUST00000079865.4	NA	ENSMUSG00000109497	FS	G/X	155	Olfr492	ENSMUST00000079865.4:c.465del	ENSMUSP00000146417.1:p.Ile156PhefsTer8	H-2-Kb	9	4	9	VVGSYTGGF	VVGSYTGGI	SMM	304.166	447.827	1.472	527	0.203	412.088	510.787	1.24	500.08	434.01	1180.3	1234.5	447.8267173	304.1655332	521.4948213	390.1665199	SSC	-0.171428571	0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.203	527	0	0	NA	7qE3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	0.869441694	sgMsh2	cell line
chr7	104084873	104084873	G	A	ENSMUST00000057104.6	NA	ENSMUSG00000051340	missense	S/F	69	Olfr645	ENSMUST00000057104.6:c.206C>T	ENSMUSP00000062821.3:p.Ser69Phe	H-2-Kb	9	3	9	MYYFLSLLF	MYYFLSLLS	SMM	232.333	518.931	2.234	161	0.174	395.348	2593.63	6.56	4591.25	443.76	4080	1019.9	518.9314595	232.3325184	1107.260991	346.9365057	SSC	2.128571429	2.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.181	161	0	0	NA	7qE3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	0.775216486	sgMsh2	cell line
chr7	108323210	108323210	TC	T	ENSMUST00000079865.4	NA	ENSMUSG00000109497	FS	G/X	155	Olfr492	ENSMUST00000079865.4:c.465del	ENSMUSP00000146417.1:p.Ile156PhefsTer8	H-2-Kb	9	8	5	YTGGFLMLL	YTGGILNAS	SMM	369.071	10211.981	27.669	527	0.203	457.608	21847.942	47.744	30461.92	456.81	28198.8	769.2	10211.98104	369.0710667	15497.08446	458.4056903	SSC	2.185714286	2.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.203	527	0	0	NA	7qE3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	0.869441694	sgMsh2	cell line
chr7	103470347	103470347	T	A	ENSMUST00000213546.2	NA	ENSMUSG00000073948	missense	Y/N	103	Olfr608	ENSMUST00000213546.2:c.307T>A	ENSMUSP00000150595.1:p.Tyr103Asn	H-2-Kb	9	10	2	MNFIHTLCI	MYFIHTLCI	NetMHCpan	133.6	738.3	5.526	253	0.249	337.578	698.82	2.07	1791.99	738.55	738.3	133.6	659.3408748	375.0679891	523.901932	300.0889473	SSC	2.028571429	2.028571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	253	0	0	NA	7qE3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr7	103561109	103561109	G	A	ENSMUST00000215673.1	5	ENSMUSG00000073947	missense	D/N	211	Olfr615	ENSMUST00000215673.1:c.631G>A	ENSMUSP00000150166.1:p.Asp211Asn	H-2-Kb	10	4	8	VIFSFGVNFL	VIFSFGVDFL	NetMHCpan	44.1	159.8	3.624	255	0.192	416.76	499.24	1.198	247.1	68.17	159.8	44.1	964.5616704	1110.017945	751.3806385	765.3498475	SSC	1.271428571	2.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.198	255	0	0	NA	7qE3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	0.848026874	sgMsh2	cell line
chr9	38368241	38368241	C	T	ENSMUST00000052085.1	NA	ENSMUSG00000049864	missense	L/F	232	Olfr250	ENSMUST00000052085.1:c.694C>T	ENSMUSP00000051631.1:p.Leu232Phe	H-2-Db	9	7	5	YALIFVNVI	YALILVNVI	NetMHC	68.36	31.31	0.458	172	0.238	328.506	149.279	0.454	31.31	68.36	145.6	288.4	193.9188379	500.7488954	152.9572264	368.6124504	SSC	2.928571429	2.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.229	172	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.980798758	sgMsh2	cell line
chr9	36743507	36743507	A	T	ENSMUST00000120381.8	1	ENSMUSG00000032116	missense	I/N	488	Stt3a	ENSMUST00000120381.8:c.1463T>A	ENSMUSP00000113116.1:p.Ile488Asn	H-2-Db	9	7	5	SSPSNVLSA	SSPSIVLSA	NetMHC	215.14	29006.74	134.827	70	0.243	399.173	26766.18	67.054	29006.74	215.14	9763.2	280	24525.62028	518.3462966	33850.88286	692.7395769	SSC	0.442857143	0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.261	70	0	0	NA	9qA4	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr9	39184623	39184623	T	G	ENSMUST00000071617.5	3	ENSMUSG00000094970	missense	I/M	148	Olfr943	ENSMUST00000071617.5:c.444T>G	ENSMUSP00000071545.5:p.Ile148Met	H-2-Db	9	8	4	TSLMLGVYI	TSLILGVYI	NetMHC	237.86	368.7	1.55	353	0.238	315.564	360.381	1.142	368.7	237.86	1437.9	872.3	352.0626876	341.6803474	292.799277	289.4476314	SSC	2.357142857	2.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.245	353	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr8	123200246	123200246	CA	C	ENSMUST00000019422.5	1	ENSMUSG00000019278	FS	N/X	270	Dpep1	ENSMUST00000019422.5:c.809del	ENSMUSP00000019422.4:p.Asn270ThrfsTer55	H-2-Db	9	45	0	IMMVLLCFL	NA	SMM	225.227	NA	NA	91	0.352	296.801	NA	NA	NA	330.23	NA	2081.1	NA	225.2267655	NA	263.3722415	SSC	3.257142857	3.257142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.359	91	0	0	NA	8qE1	chr8-57552158-129138455	3	2	1	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr8	123199101	123199101	A	G	ENSMUST00000019422.5	1	ENSMUSG00000019278	missense	I/M	98	Dpep1	ENSMUST00000019422.5:c.294A>G	ENSMUSP00000019422.4:p.Ile98Met	H-2-Db	9	10	2	RMLEQMDVI	RILEQMDVI	SMMPMBEC	318.105	2210.905	6.95	82	0.366	496.966	3897.91	7.843	10393.67	543.51	4023.4	674.5	3772.419664	450.4224204	2210.904583	318.1046371	SSC	0.557142857	0.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.359	82	0	0	NA	8qE1	chr8-57552158-129138455	3	2	1	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr9	7171000	7171000	A	G	ENSMUST00000140466.7	5	ENSMUSG00000047193	missense	Y/H	210	Dync2h1	ENSMUST00000140466.7:c.628T>C	ENSMUSP00000120007.1:p.Tyr210His	H-2-Kb	8	6	6	ISREFHNL	ISREFYNL	NetMHC	4.75	3.13	0.659	73	0.205	5.557	4.132	0.744	3.13	4.75	5.5	8	3.481288376	4.794463315	4.783436356	6.320333573	SSC	-1.271428571	-1.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.242	73	0	0	NA	9qA1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr9	14464244	14464244	CT	C	ENSMUST00000058796.6	1	ENSMUSG00000053914	FS	K/X	106	Kdm4d	ENSMUST00000058796.6:c.317del	ENSMUSP00000061632.6:p.Lys106SerfsTer62	H-2-Kb	8	33	0	MSHRFMVL	NA	NetMHC	10.85	NA	NA	126	0.222	15.839	NA	NA	NA	10.85	NA	11.6	NA	20.07890385	NA	21.56453014	SSC	0.6	0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.24	126	0	0	NA	9qA2	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr9	20260333	20260333	G	T	ENSMUST00000086474.5	2	ENSMUSG00000066897	missense	L/F	164	Olfr872	ENSMUST00000086474.5:c.492G>T	ENSMUSP00000083665.4:p.Leu164Phe	H-2-Kb	8	7	5	LASVFASL	LASVLASL	NetMHC	27.53	1510.89	54.882	270	0.222	70.725	1252.196	17.705	1510.89	27.53	1021.1	35.1	1370.061303	129.9391436	1134.33152	106.3506136	SSC	1.828571429	1.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.233	270	0	0	NA	9qA3	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.997930614	sgMsh2	cell line
chr9	38368241	38368241	C	T	ENSMUST00000052085.1	NA	ENSMUSG00000049864	missense	L/F	232	Olfr250	ENSMUST00000052085.1:c.694C>T	ENSMUSP00000051631.1:p.Leu232Phe	H-2-Kb	8	5	7	SSYALIFV	SSYALILV	NetMHC	35.19	31.57	0.897	172	0.238	70.495	88.305	1.253	31.57	35.19	86.3	100.8	90.31086459	59.94321055	116.0753495	81.04757034	SSC	2.142857143	2.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.229	172	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.980798758	sgMsh2	cell line
chr9	38368241	38368241	C	T	ENSMUST00000052085.1	NA	ENSMUSG00000049864	missense	L/F	232	Olfr250	ENSMUST00000052085.1:c.694C>T	ENSMUSP00000051631.1:p.Leu232Phe	H-2-Kb	8	7	5	YALIFVNV	YALILVNV	NetMHC	39.78	1223.77	30.763	172	0.238	90.091	1140.658	12.661	1223.77	39.78	1212.9	90.7	943.4958625	89.4828896	1068.415057	100.1705365	SSC	2.542857143	2.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.229	172	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.980798758	sgMsh2	cell line
chr8	123200246	123200246	CA	C	ENSMUST00000019422.5	1	ENSMUSG00000019278	FS	N/X	270	Dpep1	ENSMUST00000019422.5:c.809del	ENSMUSP00000019422.4:p.Asn270ThrfsTer55	H-2-Kb	8	5	7	MVNFFSTL	MVNFFSNF	NetMHCpan	19.1	114.7	6.005	91	0.352	58.936	264.197	4.483	222.38	56.25	114.7	19.1	337.0854446	61.62259741	306.013087	69.6209588	SSC	1.228571429	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.359	91	0	0	NA	8qE1	chr8-57552158-129138455	3	2	1	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr9	9180096	9180096	GA	G	ENSMUST00000093893.11	1	ENSMUSG00000050730	FS	S/X	61	Arhgap42	ENSMUST00000093893.11:c.181del	ENSMUSP00000091419.4:p.Ser61ProfsTer27	H-2-Kb	8	6	6	AVQKFPSL	AVQKFSQS	NetMHCpan	56.4	11065.3	196.193	103	0.262	117.909	6487.005	55.017	11389.22	73.36	11065.3	56.4	1485.04632	162.4575876	1908.710225	176.9049561	SSC	0.142857143	0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.265	103	0	0	NA	9qA1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr9	38026663	38026663	T	C	ENSMUST00000072974.1	NA	ENSMUSG00000094461	missense	F/L	286	Olfr883	ENSMUST00000072974.1:c.856T>C	ENSMUSP00000072741.1:p.Phe286Leu	H-2-Kb	8	4	8	VGPMLNPL	VGPMLNPF	NetMHC	89.87	2493.18	27.742	290	0.203	195.878	2841.404	14.506	2493.18	89.87	941	145.3	4006.268017	246.456343	3189.627742	253.9451951	SSC	0.342857143	0.4	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.2	290	0	0	NA	9qA4	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.856592802	sgMsh2	cell line
chr8	123200246	123200246	CA	C	ENSMUST00000019422.5	1	ENSMUSG00000019278	FS	N/X	270	Dpep1	ENSMUST00000019422.5:c.809del	ENSMUSP00000019422.4:p.Asn270ThrfsTer55	H-2-Kb	8	30	0	TSRRWQAL	NA	NetMHC	100.21	NA	NA	91	0.352	107.878	NA	NA	NA	100.21	NA	460.2	NA	104.6501849	NA	111.1066364	SSC	-1.228571429	-1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.359	91	0	0	NA	8qE1	chr8-57552158-129138455	3	2	1	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr9	39258136	39258136	A	C	ENSMUST00000076903.2	NA	ENSMUSG00000063380	missense	C/G	182	Olfr945	ENSMUST00000076903.2:c.544T>G	ENSMUSP00000076169.2:p.Cys182Gly	H-2-Kb	8	6	6	INHYFGDI	INHYFCDI	NetMHCpan	102	90.9	0.891	333	0.438	276.289	313.213	1.134	217.41	182.12	90.9	102	466.380088	456.8146256	409.0157201	370.458872	SSC	-0.657142857	-0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.438	333	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	2	1	sgMsh2	cell line
chr9	39184623	39184623	T	G	ENSMUST00000071617.5	3	ENSMUSG00000094970	missense	I/M	148	Olfr943	ENSMUST00000071617.5:c.444T>G	ENSMUSP00000071545.5:p.Ile148Met	H-2-Kb	8	5	7	QIYTSLML	QIYTSLIL	NetMHC	199.22	851.53	4.274	353	0.238	279.862	752.265	2.688	851.53	199.22	653	314.4	637.88149	245.323979	1249.510759	426.324214	SSC	1.6	1.6	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.245	353	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr8	70174385	70174385	G	A	ENSMUST00000002413.14	1	ENSMUSG00000002342	missense	R/H	29	Tmem161a	ENSMUST00000002413.14:c.86G>A	ENSMUSP00000002413.8:p.Arg29His	H-2-Kb	8	7	5	CSFAHWLL	CSFARWLL	NetMHCpan	55.4	97.3	1.756	57	0.351	78.662	371.36	4.721	346.68	214.88	97.3	55.4	396.0408646	60.77710368	506.6872779	96.54727043	SSC	1.042857143	1.042857143	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.327	57	0	0	NA	8qB3.3	chr8-57552158-129138455	3	2	1	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr9	21589965	21589965	A	T	ENSMUST00000034700.14	1	ENSMUSG00000032182	missense	S/T	236	Yipf2	ENSMUST00000034700.14:c.706T>A	ENSMUSP00000034700.7:p.Ser236Thr	H-2-Kb	8	8	4	LALTAAGL	LALSAAGL	NetMHC	241.92	271.62	1.123	67	0.209	348.652	375.733	1.078	271.62	241.92	423.5	371	385.2476516	357.8821189	366.2182643	339.4220093	SSC	1.7	1.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.23	67	0	0	NA	9qA3	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.985081722	sgMsh2	cell line
chr9	19808619	19808619	G	T	ENSMUST00000217280.1	5	ENSMUSG00000095448	missense	Q/H	100	Olfr859	ENSMUST00000217280.1:c.300G>T	ENSMUSP00000151076.1:p.Gln100His	H-2-Kb	8	10	2	THVSFFIL	TQVSFFIL	NetMHCpan	197.8	154.3	0.78	464	0.22	380.489	316.456	0.832	294.27	373.06	154.3	197.8	338.6413603	387.9180607	350.5419514	430.2689433	SSC	2.014285714	2.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.221	464	0	0	NA	9qA3	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.946535046	sgMsh2	cell line
chr9	38368241	38368241	C	T	ENSMUST00000052085.1	NA	ENSMUSG00000049864	missense	L/F	232	Olfr250	ENSMUST00000052085.1:c.694C>T	ENSMUSP00000051631.1:p.Leu232Phe	H-2-Kb	8	10	2	IFVNVIHL	ILVNVIHL	SMM	322.656	947.851	2.938	172	0.238	375.758	885.748	2.357	1466.77	381.91	789.2	396.7	947.8508415	322.6561891	823.6448742	369.6068402	SSC	1.828571429	1.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.229	172	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.980798758	sgMsh2	cell line
chr8	123200246	123200246	CA	C	ENSMUST00000019422.5	1	ENSMUSG00000019278	FS	N/X	270	Dpep1	ENSMUST00000019422.5:c.809del	ENSMUSP00000019422.4:p.Asn270ThrfsTer55	H-2-Kb	8	4	8	VMVNFFST	VMVNFFSN	NetMHCpan	308.8	416	1.347	91	0.352	457.833	367.409	0.802	351.34	385.1	416	308.8	315.3116375	775.7825382	383.4775994	530.5667136	SSC	0.957142857	1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.359	91	0	0	NA	8qE1	chr8-57552158-129138455	3	2	1	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr9	35270018	35270018	A	C	ENSMUST00000034543.4	1	ENSMUSG00000032044	missense	M/L	137	Rpusd4	ENSMUST00000034543.4:c.409A>C	ENSMUSP00000034543.4:p.Met137Leu	H-2-Kb	8	4	8	VLPILAKL	VLPILAKM	NetMHCpan	302.2	531.9	1.76	86	0.267	468.196	1829.314	3.907	1856.69	476.41	531.9	302.2	1930.812048	481.6593553	1801.938647	459.9811133	SSC	1.742857143	1.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.279	86	0	0	NA	9qA4	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr8	95011799	95011799	T	C	ENSMUST00000179619.8	1	ENSMUSG00000031785	missense	I/T	640	Adgrg1	ENSMUST00000179619.8:c.1919T>C	ENSMUSP00000137520.1:p.Ile640Thr	H-2-Kb	8	4	8	ILYLFSIT	ILYLFSII	NetMHCpan	212.2	23.2	0.109	88	0.08	278.752	51.506	0.185	34.03	483.33	23.2	212.2	75.63799359	331.6958211	68.98267002	225.8083514	SSC	1.728571429	2.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.094	88	0	0	NA	8qC5	chr8-57552158-129138455	3	2	1	0.96	4.11164545	NA	1	0.402598617	sgMsh2	cell line
chr9	14464244	14464244	CT	C	ENSMUST00000058796.6	1	ENSMUSG00000053914	FS	K/X	106	Kdm4d	ENSMUST00000058796.6:c.317del	ENSMUSP00000061632.6:p.Lys106SerfsTer62	H-2-Kb	8	63	0	KTYWNRNV	NA	SMM	220.161	NA	NA	126	0.222	287.732	NA	NA	NA	506.68	NA	327.3	NA	220.1608027	NA	248.1646968	SSC	-1.457142857	-1.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.24	126	0	0	NA	9qA2	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr8	71684012	71684012	AG	A	ENSMUST00000051995.13	1	ENSMUSG00000031805	FS	E/X	654	Jak3	ENSMUST00000051995.13:c.1967del	ENSMUSP00000060073.7:p.Gly656ValfsTer10	H-2-Kb	8	13	1	VMGIHLSL	NA	NetMHCpan	418.4	NA	NA	87	0.402	495.285	NA	NA	NA	641.33	NA	418.4	NA	483.8825938	NA	506.6872779	SSC	1.371428571	1.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.384	87	0	0	NA	8qB3.3	chr8-57552158-129138455	3	2	1	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr8	123200246	123200246	CA	C	ENSMUST00000019422.5	1	ENSMUSG00000019278	FS	N/X	270	Dpep1	ENSMUST00000019422.5:c.809del	ENSMUSP00000019422.4:p.Asn270ThrfsTer55	H-2-Kb	9	4	8	VMVNFFSTL	VMVNFFSNF	NetMHCpan	4.4	12	2.727	91	0.352	9.947	16.668	1.676	10.15	4.79	12	4.4	21.33585248	15.10462682	26.86890699	18.58874201	SSC	1.228571429	1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.359	91	0	0	NA	8qE1	chr8-57552158-129138455	3	2	1	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr9	9180096	9180096	GA	G	ENSMUST00000093893.11	1	ENSMUSG00000050730	FS	S/X	61	Arhgap42	ENSMUST00000093893.11:c.181del	ENSMUSP00000091419.4:p.Ser61ProfsTer27	H-2-Kb	9	5	7	MAVQKFPSL	MAVQKFSQS	NetMHC	53.32	4058.82	76.122	103	0.262	124.504	2384.403	19.151	4058.82	53.32	4485.7	55.7	636.9568317	206.5903351	709.9863514	193.3080768	SSC	0.142857143	0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.265	103	0	0	NA	9qA1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr9	39184623	39184623	T	G	ENSMUST00000071617.5	3	ENSMUSG00000094970	missense	I/M	148	Olfr943	ENSMUST00000071617.5:c.444T>G	ENSMUSP00000071545.5:p.Ile148Met	H-2-Kb	9	3	9	SSQIYTSLM	SSQIYTSLI	NetMHC	79.33	157.47	1.985	353	0.238	233.471	430.395	1.843	157.47	79.33	299.6	169.7	561.1900987	297.2418804	608.4851727	356.6563823	SSC	0.557142857	0.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.245	353	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr8	95011799	95011799	T	C	ENSMUST00000179619.8	1	ENSMUSG00000031785	missense	I/T	640	Adgrg1	ENSMUST00000179619.8:c.1919T>C	ENSMUSP00000137520.1:p.Ile640Thr	H-2-Kb	9	10	2	ITTSFQGFL	IITSFQGFL	NetMHC	102.57	106.52	1.039	88	0.08	314.657	287.388	0.913	106.52	102.57	152	128	422.7756832	501.3141926	543.5631415	596.0051329	SSC	0.571428571	0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.094	88	0	0	NA	8qC5	chr8-57552158-129138455	3	2	1	0.96	4.11164545	NA	1	0.402598617	sgMsh2	cell line
chr9	38498985	38498985	C	CT	ENSMUST00000214264.2	5	ENSMUSG00000094810	FS	-/X	105-106	Olfr907	ENSMUST00000214264.2:c.321dup	ENSMUSP00000148894.1:p.Ala108CysfsTer4	H-2-Kb	9	8	7	YFFAFFCNF	YFFAFFAIS	SMM	90.596	167.537	1.849	264	0.277	117.026	772.859	6.604	1240.05	114.86	1395.6	263.4	167.5367167	90.59620379	305.6680173	119.1927939	SSC	1.714285714	2.028571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.274	264	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr9	38368241	38368241	C	T	ENSMUST00000052085.1	NA	ENSMUSG00000049864	missense	L/F	232	Olfr250	ENSMUST00000052085.1:c.694C>T	ENSMUSP00000051631.1:p.Leu232Phe	H-2-Kb	9	9	3	LIFVNVIHL	LILVNVIHL	NetMHC	168.82	706.84	4.187	172	0.238	284.247	934.768	3.289	706.84	168.82	1075.9	238.8	924.9324152	329.6932077	944.6044779	340.6042008	SSC	1.828571429	2.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.229	172	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.980798758	sgMsh2	cell line
chr9	39258136	39258136	A	C	ENSMUST00000076903.2	NA	ENSMUSG00000063380	missense	C/G	182	Olfr945	ENSMUST00000076903.2:c.544T>G	ENSMUSP00000076169.2:p.Cys182Gly	H-2-Kb	9	5	7	VINHYFGDI	VINHYFCDI	NetMHC	248.12	402.57	1.622	333	0.438	313.678	336.411	1.072	402.57	248.12	262.7	378.9	382.9217191	379.4110717	289.9011913	248.4562923	SSC	-0.657142857	0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.438	333	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	2	1	sgMsh2	cell line
chr9	39258136	39258136	A	C	ENSMUST00000076903.2	NA	ENSMUSG00000063380	missense	C/G	182	Olfr945	ENSMUST00000076903.2:c.544T>G	ENSMUSP00000076169.2:p.Cys182Gly	H-2-Kb	9	6	6	INHYFGDIL	INHYFCDIL	NetMHCpan	249.4	114.5	0.459	333	0.438	350.747	161.261	0.46	107.57	280.66	114.5	249.4	208.0223508	420.8332054	225.553723	456.2995075	SSC	0.385714286	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.438	333	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	2	1	sgMsh2	cell line
chr9	19808619	19808619	G	T	ENSMUST00000217280.1	5	ENSMUSG00000095448	missense	Q/H	100	Olfr859	ENSMUST00000217280.1:c.300G>T	ENSMUSP00000151076.1:p.Gln100His	H-2-Kb	9	10	2	THVSFFILF	TQVSFFILF	SMM	175.029	226.001	1.291	464	0.22	275.16	317.494	1.154	322.92	314.68	446.4	362.2	226.0008122	175.0289954	312.0685478	235.640535	SSC	2.871428571	2.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.221	464	0	0	NA	9qA3	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.946535046	sgMsh2	cell line
chr8	123200246	123200246	CA	C	ENSMUST00000019422.5	1	ENSMUSG00000019278	FS	N/X	270	Dpep1	ENSMUST00000019422.5:c.809del	ENSMUSP00000019422.4:p.Asn270ThrfsTer55	H-2-Kb	9	45	0	IMMVLLCFL	NA	SMM	165.619	NA	NA	91	0.352	264.355	NA	NA	NA	319.66	NA	450.4	NA	165.6189397	NA	209.0499173	SSC	3.257142857	3.257142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.359	91	0	0	NA	8qE1	chr8-57552158-129138455	3	2	1	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr9	38026663	38026663	T	C	ENSMUST00000072974.1	NA	ENSMUSG00000094461	missense	F/L	286	Olfr883	ENSMUST00000072974.1:c.856T>C	ENSMUSP00000072741.1:p.Phe286Leu	H-2-Kb	9	3	9	IVGPMLNPL	IVGPMLNPF	SMM	270.464	456.152	1.687	290	0.203	367.857	772.853	2.101	983.04	410.44	1958.5	619.2	456.1524376	270.4643321	562.6651281	325.2744865	SSC	0.342857143	1.271428571	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.2	290	0	0	NA	9qA4	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.856592802	sgMsh2	cell line
chr9	14464244	14464244	CT	C	ENSMUST00000058796.6	1	ENSMUSG00000053914	FS	K/X	106	Kdm4d	ENSMUST00000058796.6:c.317del	ENSMUSP00000061632.6:p.Lys106SerfsTer62	H-2-Kb	9	32	0	CMSHRFMVL	NA	SMM	252.412	NA	NA	126	0.222	323.535	NA	NA	NA	564.66	NA	358.5	NA	252.4120012	NA	288.5692163	SSC	0.6	0.6	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.24	126	0	0	NA	9qA2	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr8	121888323	121888323	A	G	ENSMUST00000045557.9	1	ENSMUSG00000040010	missense	W/R	262	Slc7a5	ENSMUST00000045557.9:c.784T>C	ENSMUSP00000041557.8:p.Trp262Arg	H-2-Kb	9	6	6	FAYGGRNYL	FAYGGWNYL	SMM	342.855	144.248	0.421	137	0.263	404.088	149.076	0.369	211.24	824.21	122.4	408	144.2480663	342.8546153	153.9040328	400.1750427	SSC	-1.085714286	-0.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.264	137	0	0	NA	8qE1	chr8-57552158-129138455	3	2	1	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr9	42377887	42377887	A	G	ENSMUST00000042190.13	1	ENSMUSG00000037705	missense	C/R	461	Tecta	ENSMUST00000042190.13:c.1381T>C	ENSMUSP00000040262.7:p.Cys461Arg	H-2-Db	9	11	1	RGNYNKNPL	CGNYNKNPL	SMMPMBEC	308.724	530.359	1.718	66	0.348	403.896	622.878	1.542	1012.3	429.68	665.5	809.3	580.2564812	378.111599	530.3590695	308.7237209	SSC	-1.928571429	-1.928571429	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.367	66	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	2	1	sgMsh2	cell line
chr9	105026705	105026705	A	T	ENSMUST00000057742.14	1	ENSMUSG00000032564	missense	Q/H	435	Cpne4	ENSMUST00000057742.14:c.1305A>T	ENSMUSP00000049663.8:p.Gln435His	H-2-Kb	8	9	3	ASHYFILL	ASQYFILL	NetMHCpan	15.1	35.7	2.364	85	0.212	41.412	58.188	1.405	30.75	20.2	35.7	15.1	80.67519058	70.42713151	91.77829809	62.62388407	SSC	1.371428571	1.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.22	85	0	0	NA	9qF1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.942252082	sgMsh2	cell line
chr9	39819815	39819815	A	G	ENSMUST00000215922.1	3	ENSMUSG00000095774	missense	M/V	59	Olfr970	ENSMUST00000215922.1:c.175A>G	ENSMUSP00000150325.1:p.Met59Val	H-2-Kb	8	11	1	VYYFLSSL	MYYFLSSL	NetMHCpan	10.7	21.8	2.037	336	0.223	46.139	104.061	2.255	83.17	33.7	21.8	10.7	124.9510759	58.5787365	143.7937467	67.8797134	SSC	0.885714286	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.228	336	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.976515794	sgMsh2	cell line
chr9	44333095	44333095	A	C	ENSMUST00000054708.4	1	ENSMUSG00000032123	missense	Q/H	402	Dpagt1	ENSMUST00000054708.4:c.1206A>C	ENSMUSP00000056282.3:p.Gln402His	H-2-Kb	8	8	6	FSIRYHLV	FSIRYQLV	NetMHC	46.29	25.9	0.56	141	0.241	72.129	87.371	1.211	25.9	46.29	67.9	59	106.8415057	85.25895396	121.2662646	89.07175307	SSC	0.385714286	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.236	141	0	0	NA	9qA5.2	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr9	39819815	39819815	A	G	ENSMUST00000215922.1	3	ENSMUSG00000095774	missense	M/V	59	Olfr970	ENSMUST00000215922.1:c.175A>G	ENSMUSP00000150325.1:p.Met59Val	H-2-Kb	8	4	8	SSHLHTPV	SSHLHTPM	NetMHC	61.36	50.46	0.822	336	0.223	145.171	151.98	1.047	50.46	61.36	145.2	184.7	158.7596015	141.4946437	160.9681675	148.8469706	SSC	-0.214285714	-0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.228	336	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.976515794	sgMsh2	cell line
chr9	39819815	39819815	A	G	ENSMUST00000215922.1	3	ENSMUSG00000095774	missense	M/V	59	Olfr970	ENSMUST00000215922.1:c.175A>G	ENSMUSP00000150325.1:p.Met59Val	H-2-Kb	8	8	4	HTPVYYFL	HTPMYYFL	NetMHCpan	118	108.3	0.918	336	0.223	156.094	151.127	0.968	132.14	151.22	108.3	118	190.8710225	160.9681675	170.1139779	162.832091	SSC	0.842857143	0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.228	336	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.976515794	sgMsh2	cell line
chr9	42415852	42415852	CA	C	ENSMUST00000066148.11	1	ENSMUSG00000037287	FS	F/X	418	Tbcel	ENSMUST00000066148.11:c.1254del	ENSMUSP00000067882.5:p.Phe418LeufsTer32	H-2-Kb	8	34	0	VCFQRAFL	NA	SMMPMBEC	73.239	NA	NA	87	0.195	113.085	NA	NA	NA	165.58	NA	122	NA	104.169361	NA	73.23859428	SSC	0.814285714	0.871428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2	2	0.209	87	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.895139478	sgMsh2	cell line
chr9	44333095	44333095	A	C	ENSMUST00000054708.4	1	ENSMUSG00000032123	missense	Q/H	402	Dpagt1	ENSMUST00000054708.4:c.1206A>C	ENSMUSP00000056282.3:p.Gln402His	H-2-Kb	8	10	4	IRYHLVRL	IRYQLVRL	SMMPMBEC	89.896	62.05	0.69	141	0.241	146.157	90.077	0.616	114.73	189.1	280.1	212.5	65.42443789	103.2143305	62.04974485	89.89592386	SSC	-0.242857143	-0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.236	141	0	0	NA	9qA5.2	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr9	55859035	55859035	A	G	ENSMUST00000037408.8	5	ENSMUSG00000034007	missense	S/P	486	Scaper	ENSMUST00000037408.8:c.1456T>C	ENSMUSP00000043411.8:p.Ser486Pro	H-2-Kb	8	5	7	LSFCGVPL	LSFCGVSL	NetMHCpan	105.4	186	1.765	134	0.179	131.862	273.904	2.077	509.51	216.74	186	105.4	320.4350395	155.1457917	227.3735801	108.5775406	SSC	1.5	1.5	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.193	134	0	0	NA	9qB	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.826612054	sgMsh2	cell line
chr9	95765786	95765786	C	T	ENSMUST00000093800.8	1	ENSMUSG00000049493	missense	V/M	427	Pls1	ENSMUST00000093800.8:c.1279G>A	ENSMUSP00000091317.2:p.Val427Met	H-2-Kb	8	11	1	MIFQLYEM	VIFQLYEM	NetMHCpan	142.7	41.7	0.292	92	0.228	262.168	100.165	0.382	88.71	358.49	41.7	142.7	111.6194813	238.0893668	135.1263357	286.246378	SSC	0.671428571	0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.241	92	0	0	NA	9qE3.3	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr9	54628565	54628565	A	G	ENSMUST00000138315.1	3	ENSMUSG00000032281	missense	V/A	51	Acsbg1	ENSMUST00000138315.1:c.152T>C	ENSMUSP00000118133.1:p.Val51Ala	H-2-Kb	8	5	7	CAWNLSAL	CAWNLSVL	NetMHCpan	288.1	607.2	2.108	120	0.258	380.756	906.753	2.381	1552.12	410.97	607.2	288.1	825.5435717	350.5419514	987.9614526	439.2785529	SSC	0.857142857	0.857142857	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.271	120	0	0	NA	9qA5.3	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr9	108961780	108961780	C	T	ENSMUST00000112070.7	5	ENSMUSG00000025650	missense	A/V	1048	Col7a1	ENSMUST00000112070.7:c.3143C>T	ENSMUSP00000107701.1:p.Ala1048Val	H-2-Kb	8	4	8	ISVTQTPV	ISVTQTPA	SMM	316.767	1891.211	5.97	132	0.098	400.714	3615.556	9.023	5339.9	422.34	5712.8	706.6	1891.211064	316.7670499	1822.804114	379.0879676	SSC	0.157142857	0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.113	132	0	0	NA	9qF2	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.483974933	sgMsh2	cell line
chr9	45672814	45672814	A	G	ENSMUST00000034592.9	1	ENSMUSG00000032087	missense	S/G	526	Dscaml1	ENSMUST00000034592.9:c.1576A>G	ENSMUSP00000034592.8:p.Ser526Gly	H-2-Kb	8	8	4	TTIGHMNV	TTISHMNV	SMM	358.707	155.862	0.435	56	0.25	484.318	174.694	0.361	100.18	520.16	336.8	899.6	155.8619122	358.7071224	193.5263029	448.476819	SSC	0.4	0.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.291	56	0	0	NA	9qA5.2	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr9	78064712	78064712	T	G	ENSMUST00000024104.8	1	ENSMUSG00000023333	missense	Y/D	312	Gcm1	ENSMUST00000024104.8:c.934T>G	ENSMUSP00000024104.7:p.Tyr312Asp	H-2-Kb	8	10	2	IDYPAYPL	IYYPAYPL	SMM	119.053	83.703	0.703	163	0.276	224.62	75.401	0.336	51.67	871.81	67.1	287.9	83.70280268	119.0529058	113.6946424	161.3392375	SSC	-0.528571429	-0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.271	163	0	0	NA	9qE1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr9	39819815	39819815	A	G	ENSMUST00000215922.1	3	ENSMUSG00000095774	missense	M/V	59	Olfr970	ENSMUST00000215922.1:c.175A>G	ENSMUSP00000150325.1:p.Met59Val	H-2-Kb	9	10	2	PVYYFLSSL	PMYYFLSSL	SMM	35.165	16.222	0.461	336	0.223	46.13	35.595	0.772	45.21	53.06	42.4	39.2	16.22220929	35.16494966	28.79055255	58.51268133	SSC	0.885714286	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.228	336	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.976515794	sgMsh2	cell line
chr9	44333095	44333095	A	C	ENSMUST00000054708.4	1	ENSMUSG00000032123	missense	Q/H	402	Dpagt1	ENSMUST00000054708.4:c.1206A>C	ENSMUSP00000056282.3:p.Gln402His	H-2-Kb	9	9	5	SIRYHLVRL	SIRYQLVRL	NetMHC	72.21	244.4	3.385	141	0.241	145.776	454.768	3.12	244.4	72.21	546.9	165.9	396.378418	135.865753	513.1566957	155.6861575	SSC	-0.242857143	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.236	141	0	0	NA	9qA5.2	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr9	96297705	96297705	G	GA	ENSMUST00000165768.3	1	ENSMUSG00000032411	FS	E/EX	140	Tfdp2	ENSMUST00000165768.3:c.426dup	ENSMUSP00000128260.2:p.Glu143ArgfsTer47	H-2-Kb	9	20	0	PAYQFCSGM	NA	NetMHC	85.15	NA	NA	135	0.178	106.96	NA	NA	NA	85.15	NA	165.8	NA	88.53398242	NA	125.3862749	SSC	0.171428571	0.171428571	FALSE	FALSE	FALSE	1	FALSE	0	Strelka2;Vardict	2	0.1778	135	0	0	NA	9qE3.3	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.761511001	sgMsh2	cell line
chr9	65215569	65215569	C	G	ENSMUST00000213396.1	1	ENSMUSG00000032392	missense	D/E	37	Parp16	ENSMUST00000213396.1:c.111C>G	ENSMUSP00000150318.1:p.Asp37Glu	H-2-Kb	9	6	6	QSYKRESVL	QSYKRDSVL	SMM	60.969	92.068	1.51	31	0.258	121.077	202.484	1.672	305.14	167.98	597.5	323.2	92.06827368	60.9691303	99.82745515	74.17370966	SSC	-0.857142857	-0.857142857	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.281	31	0	0	NA	9qC	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr9	44333095	44333095	A	C	ENSMUST00000054708.4	1	ENSMUSG00000032123	missense	Q/H	402	Dpagt1	ENSMUST00000054708.4:c.1206A>C	ENSMUSP00000056282.3:p.Gln402His	H-2-Kb	9	6	8	ATFSIRYHL	ATFSIRYQL	NetMHCpan	80.7	165.9	2.056	141	0.241	339.306	452.341	1.333	331.74	204.25	165.9	80.7	572.9411296	474.3621186	581.0988286	615.5310989	SSC	0.185714286	0.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.236	141	0	0	NA	9qA5.2	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr9	95765786	95765786	C	T	ENSMUST00000093800.8	1	ENSMUSG00000049493	missense	V/M	427	Pls1	ENSMUST00000093800.8:c.1279G>A	ENSMUSP00000091317.2:p.Val427Met	H-2-Kb	9	11	1	MIFQLYEMI	VIFQLYEMI	NetMHCpan	143.7	56.8	0.395	92	0.228	228.937	83.765	0.366	73.07	213.39	56.8	143.7	112.7482994	289.1412139	94.46044779	244.4837509	SSC	0.671428571	0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.241	92	0	0	NA	9qE3.3	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chr9	105026705	105026705	A	T	ENSMUST00000057742.14	1	ENSMUSG00000032564	missense	Q/H	435	Cpne4	ENSMUST00000057742.14:c.1305A>T	ENSMUSP00000049663.8:p.Gln435His	H-2-Kb	9	9	3	ASHYFILLI	ASQYFILLI	NetMHCpan	194.8	511.6	2.626	85	0.212	354.936	657.147	1.851	562.48	339.95	511.6	194.8	751.8132925	369.9218633	849.6694433	416.1500968	SSC	2.128571429	2.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.22	85	0	0	NA	9qF1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.942252082	sgMsh2	cell line
chr9	50541135	50541135	CT	C	ENSMUST00000119103.1	5	ENSMUSG00000032066	FS	K/X	211	Bco2	ENSMUST00000119103.1:c.632del	ENSMUSP00000112727.1:p.Lys211ArgfsTer23	H-2-Kb	9	22	0	RCYVPLPPL	NA	NetMHCpan	362.2	NA	NA	62	0.145	400.867	NA	NA	NA	415.27	NA	362.2	NA	386.4648502	NA	431.7675507	SSC	0.814285714	0.814285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.146	62	0	0	NA	9qA5.3	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.625312745	sgMsh2	cell line
chr9	46196067	46196067	G	T	ENSMUST00000126865.7	1	ENSMUSG00000034135	missense	R/S	467	Sik3	ENSMUST00000126865.7:c.1401G>T	ENSMUSP00000121032.1:p.Arg467Ser	H-2-Kb	9	8	4	SMRSHTVGV	SMRRHTVGV	SMM	275.493	411.254	1.493	56	0.321	474.924	490.105	1.032	455.1	499.81	1075.3	1239.2	411.2538721	275.4926395	525.1096507	450.0388435	SSC	-0.171428571	-0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.333	56	0	0	NA	9qA5.2	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	2	1	sgMsh2	cell line
chr9	105026705	105026705	A	T	ENSMUST00000057742.14	1	ENSMUSG00000032564	missense	Q/H	435	Cpne4	ENSMUST00000057742.14:c.1305A>T	ENSMUSP00000049663.8:p.Gln435His	H-2-Kb	9	10	2	SHYFILLIL	SQYFILLIL	SMM	295.196	381.162	1.291	85	0.212	321.169	437.853	1.363	778.38	713.59	417.3	296.2	381.1623536	295.1956816	458.4056903	346.1385739	SSC	3.128571429	3.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.22	85	0	0	NA	9qF1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.942252082	sgMsh2	cell line
chr9	39719449	39719449	C	A	ENSMUST00000215164.2	5	ENSMUSG00000095839	missense	S/Y	74	Olfr965	ENSMUST00000215164.2:c.221C>A	ENSMUSP00000150401.1:p.Ser74Tyr	H-2-Kb	9	6	6	IDLCYYTVI	IDLCYSTVI	SMMPMBEC	261.969	1312.955	5.012	459	0.246	445.578	2632.181	5.907	5805.22	2025.9	3444.2	437.1	1820.161819	454.0566075	1312.955479	261.9690589	SSC	1.671428571	1.671428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	459	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chrX	69844125	69844125	G	T	ENSMUST00000033532.6	1	ENSMUSG00000031189	missense	K/N	923	Aff2	ENSMUST00000033532.6:c.2769G>T	ENSMUSP00000033532.6:p.Lys923Asn	H-2-Db	9	7	5	CATFNGISI	CATFKGISI	NetMHC	268.39	18926.62	70.519	39	0.487	327.554	13462.653	41.101	18926.62	268.39	14549.6	327.3	10656.63277	327.8083411	12375.70647	368.6124504	SSC	0.914285714	1	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.487	39	0	0	NA	XqA7.2	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	sgMsh2	cell line
chrX	90892634	90892634	GA	G	ENSMUST00000172155.1	NA	ENSMUSG00000091497	FS	K/X	165	Gm44	ENSMUST00000172155.1:c.495del	ENSMUSP00000129722.1:p.Lys165AsnfsTer20	H-2-Db	9	7	5	ISKLNFPTM	ISKLKLPNN	SMMPMBEC	155.801	141765.319	909.913	45	0.556	242.025	91004.939	376.014	45670.91	460.09	43170.9	325.7	136338.9673	158.3507045	141765.3192	155.8009136	SSC	-0.171428571	0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.569	45	0	0	NA	XqC1	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	sgMsh2	cell line
chrX	59999509	59999509	A	G	ENSMUST00000033477.4	1	ENSMUSG00000031138	missense	T/A	16	F9	ENSMUST00000033477.4:c.46A>G	ENSMUSP00000033477.4:p.Thr16Ala	H-2-Db	9	10	2	IAIFLLGYL	ITIFLLGYL	SMMPMBEC	347.993	1988.703	5.715	88	0.455	414.012	2182.409	5.271	2017.24	466.93	8105.4	1958.5	2347.577833	361.0937737	1988.703326	347.9925929	SSC	2.428571429	2.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.483	88	0	0	NA	XqA6	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	sgMsh2	cell line
chrX	139080483	139080483	GA	G	ENSMUST00000033626.14	1	ENSMUSG00000031271	FS	F/X	361	Serpina7	ENSMUST00000033626.14:c.1083del	ENSMUSP00000033626.8:p.His362ThrfsTer43	H-2-Kb	8	7	6	LSYAFTRL	LSYAFHKA	NetMHC	2.2	115.41	52.459	23	0.609	2.348	118.06	50.288	115.41	2.2	56.2	2.5	159.1255801	2.447597495	120.7090967	2.247708563	SSC	0.157142857	0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.601	23	0	0	NA	XqF1	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	sgMsh2	cell line
chrX	21486522	21486522	A	AT	ENSMUST00000089188.8	1	ENSMUSG00000068122	FS	I/IX	132	Agtr2	ENSMUST00000089188.8:c.402dup	ENSMUSP00000086592.2:p.Ile135TyrfsTer8	H-2-Kb	8	9	6	ASIFFYYL	ASIFFITC	NetMHC	7.16	2524.56	352.592	171	0.485	9.18	748.528	81.541	2524.56	7.16	989.2	7.3	438.2682402	11.05961477	507.8553127	11.93273511	SSC	1.5	1.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.481	171	0	0	NA	XqA2	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	sgMsh2	cell line
chrX	59999509	59999509	A	G	ENSMUST00000033477.4	1	ENSMUSG00000031138	missense	T/A	16	F9	ENSMUST00000033477.4:c.46A>G	ENSMUSP00000033477.4:p.Thr16Ala	H-2-Kb	8	11	1	AIFLLGYL	TIFLLGYL	NetMHC	30.51	27.38	0.897	88	0.455	46.432	36.632	0.789	27.38	30.51	38.3	57.6	37.47485835	47.28680813	35.78821189	45.57639811	SSC	2.428571429	2.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.483	88	0	0	NA	XqA6	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	sgMsh2	cell line
chrX	59250947	59250947	A	AG	ENSMUST00000124402.1	2	ENSMUSG00000031137	FS	P/PX	23	Fgf13	ENSMUST00000124402.1:c.68dup	ENSMUSP00000114905.1:p.Gly24TrpfsTer28	H-2-Kb	8	19	0	VTTRFHPI	NA	NetMHCpan	45.2	NA	NA	27	0.444	60.112	NA	NA	NA	51.4	NA	45.2	NA	68.82401428	NA	71.07878574	SSC	-0.485714286	-0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.427	27	0	0	NA	XqA6	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	sgMsh2	cell line
chrX	152061792	152061792	CA	C	ENSMUST00000045312.5	1	ENSMUSG00000041133	FS	N/X	1229	Smc1a	ENSMUST00000045312.5:c.3686del	ENSMUSP00000044645.5:p.Asn1229ThrfsTer47	H-2-Kb	8	19	0	SIFLSGSL	NA	NetMHC	59.77	NA	NA	85	0.4	63.291	NA	NA	NA	59.77	NA	62.5	NA	64.08258172	NA	76.51384027	SSC	1.842857143	1.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.412	85	0	0	NA	XqF3	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	sgMsh2	cell line
chr9	123640590	123640590	A	T	ENSMUST00000040960.12	1	ENSMUSG00000036814	missense	C/S	481	Slc6a20a	ENSMUST00000040960.12:c.1441T>A	ENSMUSP00000047690.6:p.Cys481Ser	H-2-Kb	8	10	2	VSYVYGLK	VCYVYGLK	SMMPMBEC	22.067	186.526	8.453	71	0.296	63.142	2311.159	36.603	5104.27	96.31	4266.9	318.2	355.4184757	29.97367541	186.5262676	22.06683258	SSC	0.042857143	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.288	71	0	0	NA	9qF4	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chrM	3537	3537	G	A	ENSMUST00000082392.1	NA	ENSMUSG00000064341	missense	A/T	263	mt-Nd1	ENSMUST00000082392.1:c.787G>A	ENSMUSP00000080991.2:p.Ala263Thr	H-2-Kb	8	5	7	TNFMMETL	TNFMMEAL	NetMHCpan	63.2	55.4	0.877	2552	0.028	170.876	102.343	0.599	82.86	150	55.4	63.2	129.3421274	215.149331	121.8260042	191.7520431	SSC	0.385714286	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.028	2552	0	0	NA	.	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	sgMsh2	cell line
chrX	139080483	139080483	GA	G	ENSMUST00000033626.14	1	ENSMUSG00000031271	FS	F/X	361	Serpina7	ENSMUST00000033626.14:c.1083del	ENSMUSP00000033626.8:p.His362ThrfsTer43	H-2-Kb	8	38	0	KYLLFTLL	NA	NetMHCpan	97.5	NA	NA	23	0.609	173.503	NA	NA	NA	158.32	NA	97.5	NA	192.6371303	NA	188.68614	SSC	2.285714286	2.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.601	23	0	0	NA	XqF1	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	sgMsh2	cell line
chrX	139080483	139080483	GA	G	ENSMUST00000033626.14	1	ENSMUSG00000031271	FS	F/X	361	Serpina7	ENSMUST00000033626.14:c.1083del	ENSMUSP00000033626.8:p.His362ThrfsTer43	H-2-Kb	8	35	0	ISRKYLLF	NA	NetMHCpan	149.6	NA	NA	23	0.609	268.382	NA	NA	NA	209.62	NA	149.6	NA	378.2160895	NA	327.1447838	SSC	-0.014285714	0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.601	23	0	0	NA	XqF1	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	sgMsh2	cell line
chrX	72257609	72257609	T	G	ENSMUST00000064780.3	1	ENSMUSG00000031340	missense	K/T	865	Gabre	ENSMUST00000064780.3:c.2594A>C	ENSMUSP00000066543.3:p.Lys865Thr	H-2-Kb	8	8	4	VLRTYFCM	VLRKYFCM	NetMHCpan	313.9	380	1.211	44	0.523	454.151	592.614	1.305	877.47	794.76	380	313.9	621.9278428	475.0507412	563.3003227	433.2514252	SSC	0.642857143	0.971428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.5	44	0	0	NA	XqA7.3	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	sgMsh2	cell line
chr9	123640590	123640590	A	T	ENSMUST00000040960.12	1	ENSMUSG00000036814	missense	C/S	481	Slc6a20a	ENSMUST00000040960.12:c.1441T>A	ENSMUSP00000047690.6:p.Cys481Ser	H-2-Kb	9	8	4	IAVSYVYGL	IAVCYVYGL	NetMHCpan	23.6	41.6	1.763	71	0.296	105.237	151.867	1.443	54.13	25.5	41.6	23.6	254.7475407	184.9737069	249.6031145	237.82089	SSC	1.2	1.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.288	71	0	0	NA	9qF4	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	sgMsh2	cell line
chrM	3537	3537	G	A	ENSMUST00000082392.1	NA	ENSMUSG00000064341	missense	A/T	263	mt-Nd1	ENSMUST00000082392.1:c.787G>A	ENSMUSP00000080991.2:p.Ala263Thr	H-2-Kb	9	5	7	TNFMMETLL	TNFMMEALL	NetMHCpan	49.7	31.3	0.63	2552	0.028	74.894	48.24	0.644	29.97	62.67	31.3	49.7	65.17934622	87.11842194	67.0270337	91.25359861	SSC	1.428571429	1.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.028	2552	0	0	NA	.	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	sgMsh2	cell line
chrX	21486522	21486522	A	AT	ENSMUST00000089188.8	1	ENSMUSG00000068122	FS	I/IX	132	Agtr2	ENSMUST00000089188.8:c.402dup	ENSMUSP00000086592.2:p.Ile135TyrfsTer8	H-2-Kb	9	8	7	FASIFFYYL	FASIFFITC	NetMHC	96.54	5565.47	57.649	171	0.485	154.349	3955.146	25.625	5565.47	96.54	6610.1	127.1	2344.822647	181.5975563	1710.999962	221.9473684	SSC	1.5	1.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.481	171	0	0	NA	XqA2	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	sgMsh2	cell line
chrX	53737717	53737717	CT	C	ENSMUST00000069209.1	1	ENSMUSG00000055555	FS	F/X	191	4930502E18Rik	ENSMUST00000069209.1:c.575del	ENSMUSP00000064619.1:p.Phe192SerfsTer39	H-2-Kb	9	9	4	TIFSPWILL	NA	SMM	107.922	NA	NA	70	0.5	133.325	NA	NA	NA	110.65	NA	156	NA	107.9220037	NA	162.6484766	SSC	1.657142857	1.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.516	70	0	0	NA	XqA5	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	sgMsh2	cell line
chrX	59999509	59999509	A	G	ENSMUST00000033477.4	1	ENSMUSG00000031138	missense	T/A	16	F9	ENSMUST00000033477.4:c.46A>G	ENSMUSP00000033477.4:p.Thr16Ala	H-2-Kb	9	10	2	IAIFLLGYL	ITIFLLGYL	NetMHCpan	96.1	111.5	1.16	88	0.455	171.58	212.675	1.24	185.88	157.7	111.5	96.1	295.876178	214.8374555	239.4693856	185.4598909	SSC	2.428571429	2.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.483	88	0	0	NA	XqA6	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	sgMsh2	cell line
chrX	86747655	86747655	G	A	ENSMUST00000113966.7	5	ENSMUSG00000052372	missense	P/S	560	Il1rapl1	ENSMUST00000113966.7:c.1678C>T	ENSMUSP00000109599.1:p.Pro560Ser	H-2-Kb	9	10	2	MSFKRIEPI	MPFKRIEPI	NetMHCpan	58.3	2180.6	37.403	75	0.533	177.366	2262.711	12.757	4631.31	173.91	2180.6	58.3	2344.822647	233.4049166	1946.480243	180.8214719	SSC	-0.242857143	-0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.526	75	0	0	NA	XqC1	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	sgMsh2	cell line
chrX	139080483	139080483	GA	G	ENSMUST00000033626.14	1	ENSMUSG00000031271	FS	F/X	361	Serpina7	ENSMUST00000033626.14:c.1083del	ENSMUSP00000033626.8:p.His362ThrfsTer43	H-2-Kb	9	37	0	RKYLLFTLL	NA	NetMHC	203.66	NA	NA	23	0.609	211.441	NA	NA	NA	203.66	NA	213.9	NA	208.9825384	NA	249.6031145	SSC	2.285714286	2.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.601	23	0	0	NA	XqF1	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	sgMsh2	cell line
chrX	139080483	139080483	GA	G	ENSMUST00000033626.14	1	ENSMUSG00000031271	FS	F/X	361	Serpina7	ENSMUST00000033626.14:c.1083del	ENSMUSP00000033626.8:p.His362ThrfsTer43	H-2-Kb	9	7	6	LSYAFTRLC	LSYAFHKAV	NetMHCpan	150.2	10.8	0.072	23	0.609	376.586	69.998	0.186	9.47	210.86	10.8	150.2	134.001605	587.6381732	129.1962773	542.312981	SSC	0.628571429	0.628571429	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.601	23	0	0	NA	XqF1	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	sgMsh2	cell line
chrX	90892634	90892634	GA	G	ENSMUST00000172155.1	NA	ENSMUSG00000091497	FS	K/X	165	Gm44	ENSMUST00000172155.1:c.495del	ENSMUSP00000129722.1:p.Lys165AsnfsTer20	H-2-Kb	9	7	5	ISKLNFPTM	ISKLKLPNN	NetMHCpan	113.7	16922.2	148.832	45	0.556	241.21	9647.087	39.995	17062.13	213.73	16922.2	113.7	2371.974414	308.3968972	1216.886295	268.6890699	SSC	-0.171428571	0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.569	45	0	0	NA	XqC1	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	sgMsh2	cell line
chrX	56362784	56362784	GA	G	ENSMUST00000101560.3	1	ENSMUSG00000073176	FS	E/X	239	Zfp449	ENSMUST00000101560.3:c.723del	ENSMUSP00000099096.3:p.Lys241AsnfsTer10	H-2-Kb	9	12	2	KNWKLCTHL	NA	NetMHCpan	216.4	NA	NA	50	0.54	360.47	NA	NA	NA	217.15	NA	216.4	NA	593.0755223	NA	503.7905305	SSC	0.2	0.2	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.55	50	0	0	NA	XqA6	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	sgMsh2	cell line
chrX	139080483	139080483	GA	G	ENSMUST00000033626.14	1	ENSMUSG00000031271	FS	F/X	361	Serpina7	ENSMUST00000033626.14:c.1083del	ENSMUSP00000033626.8:p.His362ThrfsTer43	H-2-Kb	9	33	0	LWISRKYLL	NA	SMM	142.269	NA	NA	23	0.609	273.194	NA	NA	NA	271.44	NA	746.2	NA	142.2689086	NA	274.9476424	SSC	0.228571429	0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.601	23	0	0	NA	XqF1	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	sgMsh2	cell line
chrX	152061792	152061792	CA	C	ENSMUST00000045312.5	1	ENSMUSG00000041133	FS	N/X	1229	Smc1a	ENSMUST00000045312.5:c.3686del	ENSMUSP00000044645.5:p.Asn1229ThrfsTer47	H-2-Kb	9	31	0	VHLLSWISL	NA	NetMHC	278.75	NA	NA	85	0.4	319.29	NA	NA	NA	278.75	NA	330.4	NA	317.7678825	NA	320.8115533	SSC	1.914285714	1.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.412	85	0	0	NA	XqF3	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	sgMsh2	cell line
chrX	21486522	21486522	A	AT	ENSMUST00000089188.8	1	ENSMUSG00000068122	FS	I/IX	132	Agtr2	ENSMUST00000089188.8:c.402dup	ENSMUSP00000086592.2:p.Ile135TyrfsTer8	H-2-Kb	9	10	5	SIFFYYLHE	NA	SMMPMBEC	47.561	NA	NA	171	0.485	169.033	NA	NA	NA	288.05	NA	539.9	NA	50.01612019	NA	47.56089297	SSC	0.014285714	1.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.481	171	0	0	NA	XqA2	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	sgMsh2	cell line
chrX	101673545	101673545	GA	G	ENSMUST00000044475.4	1	ENSMUSG00000034160	FS	K/X	757	Ogt	ENSMUST00000044475.4:c.2271del	ENSMUSP00000045409.4:p.Lys757AsnfsTer23	H-2-Kb	9	22	0	VTQLLICPL	NA	NetMHCpan	324.4	NA	NA	88	0.477	478.008	NA	NA	NA	401.25	NA	324.4	NA	554.7662088	NA	602.9065471	SSC	1.9	2.085714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.484	88	0	0	NA	XqD	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	sgMsh2	cell line
chrX	59999509	59999509	A	G	ENSMUST00000033477.4	1	ENSMUSG00000031138	missense	T/A	16	F9	ENSMUST00000033477.4:c.46A>G	ENSMUSP00000033477.4:p.Thr16Ala	H-2-Kb	9	11	1	AIFLLGYLL	TIFLLGYLL	SMM	413.152	350.841	0.849	88	0.455	482.006	383.499	0.796	363.12	455.56	490.4	781.3	350.8407252	413.1521337	403.8778168	508.4520469	SSC	2.328571429	2.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.483	88	0	0	NA	XqA6	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	sgMsh2	cell line
chrX	139080483	139080483	GA	G	ENSMUST00000033626.14	1	ENSMUSG00000031271	FS	F/X	361	Serpina7	ENSMUST00000033626.14:c.1083del	ENSMUSP00000033626.8:p.His362ThrfsTer43	H-2-Kb	9	11	2	FTRLCYTLV	NA	SMM	467.854	NA	NA	23	0.609	499.34	NA	NA	NA	469.93	NA	1405.5	NA	467.8536263	NA	528.7495369	SSC	1.114285714	1.114285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.601	23	0	0	NA	XqF1	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	sgMsh2	cell line
chrX	152061792	152061792	CA	C	ENSMUST00000045312.5	1	ENSMUSG00000041133	FS	N/X	1229	Smc1a	ENSMUST00000045312.5:c.3686del	ENSMUSP00000044645.5:p.Asn1229ThrfsTer47	H-2-Kb	9	34	0	LSWISLPPI	NA	NetMHCpan	337.8	NA	NA	85	0.4	474.202	NA	NA	NA	476.07	NA	337.8	NA	588.9928191	NA	472.3348608	SSC	1.128571429	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.412	85	0	0	NA	XqF3	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	sgMsh2	cell line
chrX	64271265	64271265	T	C	ENSMUST00000069926.13	1	ENSMUSG00000046699	missense	T/A	599	Slitrk4	ENSMUST00000069926.13:c.1795A>G	ENSMUSP00000064443.7:p.Thr599Ala	H-2-Kb	9	8	4	PAIAFTTPL	PAITFTTPL	SMM	267.985	239.392	0.893	86	0.488	348.429	300.576	0.863	409.34	540.29	319.8	361.7	239.3922023	267.9847002	281.3519957	335.1583163	SSC	1.414285714	1.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.482	86	0	0	NA	XqA7.1	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	sgMsh2	cell line
chr9	119958066	119958066	A	G	ENSMUST00000035100.5	1	ENSMUSG00000032514	missense	E/G	713	Ttc21a	ENSMUST00000035100.5:c.2138A>G	ENSMUSP00000035100.5:p.Glu713Gly	H-2-Kb	9	4	8	LYIGCYVGL	LYIGCYVEL	SMMPMBEC	243.36	269.929	1.109	160	0.188	418.183	661.365	1.582	1022.91	541.17	983.8	753	338.9299909	295.1956816	269.9292823	243.3604501	SSC	1.842857143	1.842857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.206	160	0	0	NA	9qF4	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.882290586	sgMsh2	cell line
chr1	85579187	85579187	CT	C	ENSMUST00000093508.6	1	ENSMUSG00000070034	FS	K/X	385	Sp110	ENSMUST00000093508.6:c.1154del	ENSMUSP00000091226.6:p.Lys385SerfsTer13	H-2-Db	9	11	1	SAFRMRQEI	NA	SMMPMBEC	212.114	NA	NA	239	0.126	246.936	NA	NA	NA	356.88	NA	263.4	NA	230.4729708	NA	212.1143253	SSC_p20	-0.971428571	-0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1255	239	0	0	NA	1qC5	chr1-72595512-93413733	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	0.740046513	sgMsh2	cell line
chr1	92588592	92588592	A	C	ENSMUST00000190505.2	3	ENSMUSG00000046300	missense	K/N	87	Olfr1412	ENSMUST00000190505.2:c.261A>C	ENSMUSP00000150943.1:p.Lys87Asn	H-2-Db	9	11	1	NAMANFYSS	KAMANFYSS	SMM	238.572	187.767	0.787	318	0.252	448.615	248.476	0.554	418.17	714	263.3	574.7	187.7673167	238.5722904	233.6522675	322.5299134	SSC_p20	0.014285714	0.385714286	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.253	318	0	0	NA	1qD	chr1-72595512-93413733	6	4	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr1	74594618	74594618	CT	C	ENSMUST00000027357.11	1	ENSMUSG00000026171	FS	K/X	245	Rnf25	ENSMUST00000027357.11:c.734del	ENSMUSP00000027357.5:p.Lys245ArgfsTer31	H-2-Kb	8	24	0	TSLAFSSL	NA	NetMHC	4.67	NA	NA	60	0.217	8.657	NA	NA	NA	4.67	NA	6.1	NA	11.21346934	NA	11.74194387	SSC_p20	1.4	1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.245	60	0	0	NA	1qC3	chr1-72595512-93413733	6	4	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr1	92573497	92573497	T	C	ENSMUST00000214239.1	5	ENSMUSG00000058904	missense	F/L	109	Olfr1413	ENSMUST00000214239.1:c.325T>C	ENSMUSP00000150792.1:p.Phe109Leu	H-2-Kb	8	8	4	TQFLFFSL	TQFFFFSL	NetMHC	7.41	14.4	1.943	282	0.216	9.997	12.057	1.206	14.4	7.41	8.2	10	12.09873599	10.7830098	12.01544888	9.99401507	SSC_p20	1.671428571	1.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.222	282	0	0	NA	1qD	chr1-72595512-93413733	6	4	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr1	127412243	127412243	G	T	ENSMUST00000038361.10	1	ENSMUSG00000036155	missense	V/L	454	Mgat5	ENSMUST00000038361.10:c.1360G>T	ENSMUSP00000038359.4:p.Val454Leu	H-2-Kb	8	4	8	QSLVYGKL	QSLVYGKV	NetMHC	15.26	75.8	4.967	93	0.258	52.362	246.565	4.709	75.8	15.26	265.7	39.6	232.6697911	65.12383991	260.4593785	71.90183929	SSC_p20	0.771428571	0.771428571	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.27	93	0	0	NA	1qE3	chr1-93413734-130737944	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr1	92573497	92573497	T	C	ENSMUST00000214239.1	5	ENSMUSG00000058904	missense	F/L	109	Olfr1413	ENSMUST00000214239.1:c.325T>C	ENSMUSP00000150792.1:p.Phe109Leu	H-2-Kb	8	9	3	QFLFFSLL	QFFFFSLL	NetMHCpan	54.9	24.2	0.441	282	0.216	76.332	26.545	0.348	33.77	77.72	24.2	54.9	17.93659491	74.94454029	28.88949831	124.9510759	SSC_p20	2.714285714	2.714285714	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.222	282	0	0	NA	1qD	chr1-72595512-93413733	6	4	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr1	130655982	130655982	G	A	ENSMUST00000027657.13	1	ENSMUSG00000026405	missense	T/I	83	C4bp	ENSMUST00000027657.13:c.248C>T	ENSMUSP00000027657.7:p.Thr83Ile	H-2-Kb	8	10	2	TILKYECL	TTLKYECL	SMMPMBEC	182.28	174.88	0.959	62	0.306	207.754	228.089	1.098	260.41	219.74	261.8	309.4	195.7672319	195.7672319	174.8799418	182.2804114	SSC_p20	0.842857143	0.842857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.291	62	0	0	NA	1qE4	chr1-93413734-130737944	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr1	23370041	23370041	CT	C	ENSMUST00000027343.5	3	ENSMUSG00000026158	FS	K/X	368	Ogfrl1	ENSMUST00000027343.5:c.1103del	ENSMUSP00000027343.5:p.Lys368ArgfsTer83	H-2-Kb	8	40	0	KTVLLTNL	NA	NetMHCpan	199	NA	NA	138	0.275	255.732	NA	NA	NA	241.23	NA	199	NA	275.892567	NA	270.2340064	SSC_p20	1.528571429	1.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.262	138	0	0	NA	1qA5	chr1-3216742-34288324	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr1	66672782	66672782	G	T	ENSMUST00000061620.16	1	ENSMUSG00000055567	missense	Q/H	2754	Unc80	ENSMUST00000061620.16:c.8262G>T	ENSMUSP00000053692.9:p.Gln2754His	H-2-Kb	8	6	6	VALQIHAL	VALQIQAL	NetMHCpan	178.3	236.9	1.329	107	0.252	247.747	275.021	1.11	172.04	245.61	236.9	178.3	313.1410475	249.8848923	344.1438398	252.7784229	SSC_p20	1.285714286	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.252	107	0	0	NA	1qC3	chr1-36799179-72592159	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr1	37807068	37807068	T	C	ENSMUST00000041815.14	1	ENSMUSG00000060771	missense	I/V	326	Tsga10	ENSMUST00000041815.14:c.976A>G	ENSMUSP00000048859.8:p.Ile326Val	H-2-Kb	8	11	1	VSRMRRQL	ISRMRRQL	SMMPMBEC	230.537	224.771	0.975	79	0.316	277.11	292.987	1.057	284.16	271.25	1438.9	1646.9	301.8144301	282.9697428	224.7708563	230.5366617	SSC_p20	-1.728571429	-1.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.33	79	0	0	NA	1qB	chr1-36799179-72592159	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr1	74594618	74594618	CT	C	ENSMUST00000027357.11	1	ENSMUSG00000026171	FS	K/X	245	Rnf25	ENSMUST00000027357.11:c.734del	ENSMUSP00000027357.5:p.Lys245ArgfsTer31	H-2-Kb	8	26	0	LAFSSLLL	NA	NetMHCpan	157.3	NA	NA	60	0.217	410.488	NA	NA	NA	334.86	NA	157.3	NA	486.1160944	NA	514.9202839	SSC_p20	2.057142857	2.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.245	60	0	0	NA	1qC3	chr1-72595512-93413733	6	4	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr1	144139554	144139554	T	G	ENSMUST00000111941.1	1	ENSMUSG00000051079	missense	K/Q	142	Rgs13	ENSMUST00000111941.1:c.424A>C	ENSMUSP00000107572.1:p.Lys142Gln	H-2-Kb	8	11	1	QSEMYQQL	KSEMYQQL	SMMPMBEC	286.246	135.438	0.473	224	0.237	400.316	257.12	0.642	295.09	446.03	493.4	1564.5	219.1492557	354.6010359	135.4378341	286.246378	SSC_p20	-0.985714286	-0.985714286	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.242	224	0	0	NA	1qF	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr1	36316314	36316314	C	A	ENSMUST00000097778.8	1	ENSMUSG00000037447	missense	P/H	66	Arid5a	ENSMUST00000097778.8:c.197C>A	ENSMUSP00000095385.2:p.Pro66His	H-2-Kb	8	7	5	RSQSHTQL	RSQSPTQL	SMM	239.188	1335.796	5.585	64	0.219	394.128	3510.897	8.908	5437.85	511.09	7768.4	1494.3	1335.795574	239.1883374	1583.944645	277.1660292	SSC_p20	-1.242857143	-1.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.22	64	0	0	NA	1qB	chr1-34289226-36799178	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr1	128236639	128236639	T	C	ENSMUST00000036288.10	5	ENSMUSG00000056211	missense	S/P	1097	R3hdm1	ENSMUST00000036288.10:c.3289T>C	ENSMUSP00000043103.4:p.Ser1097Pro	H-2-Kb	8	5	7	VLATFPPI	VLATFPSI	NetMHCpan	126.5	191	1.51	195	0.205	379.113	788.522	2.08	1354.05	567.82	191	126.5	773.9982879	374.7485835	803.0452175	383.4775994	SSC_p20	1.285714286	1.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.21	195	0	0	NA	1qE3	chr1-93413734-130737944	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr1	46775247	46775247	A	G	ENSMUST00000189749.6	5	ENSMUSG00000101337	missense	M/V	3620	Dnah7c	ENSMUST00000189749.6:c.10858A>G	ENSMUSP00000140430.1:p.Met3620Val	H-2-Kb	8	6	6	VQQLHVFL	VQQLHMFL	SMM	187.387	144.79	0.773	316	0.228	373.332	246.921	0.661	259.02	699.81	396.4	484.4	144.7904774	187.3872337	234.8226582	262.2647967	SSC_p20	0.628571429	0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.228	316	0	0	NA	1qC1.1	chr1-36799179-72592159	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr1	92982967	92982968	AGT	A	ENSMUST00000169198.2	1	ENSMUSG00000026271	FS	V/X	134	Gpr35	ENSMUST00000169198.2:c.407_408del	ENSMUSP00000126914.1:p.Val136GlyfsTer68	H-2-Kb	8	43	0	AQFQHHCL	NA	SMM	183.544	NA	NA	86	0.058	257.866	NA	NA	NA	801.97	NA	325.3	NA	183.5439188	NA	190.4320313	SSC_p20	-0.614285714	-0.614285714	FALSE	FALSE	FALSE	1	FALSE	0	Strelka2;Vardict	2	0.0581	86	0	0	NA	1qD	chr1-72595512-93413733	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	0.342603206	sgMsh2	cell line
chr1	92573497	92573497	T	C	ENSMUST00000214239.1	5	ENSMUSG00000058904	missense	F/L	109	Olfr1413	ENSMUST00000214239.1:c.325T>C	ENSMUSP00000150792.1:p.Phe109Leu	H-2-Kb	9	8	4	TQFLFFSLL	TQFFFFSLL	NetMHCpan	5.6	5.2	0.929	282	0.216	16.053	18.853	1.174	10.41	6.69	5.2	5.6	27.29669078	25.41616376	30.14740949	31.71392538	SSC_p20	2.714285714	2.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.222	282	0	0	NA	1qD	chr1-72595512-93413733	6	4	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr1	74594618	74594618	CT	C	ENSMUST00000027357.11	1	ENSMUSG00000026171	FS	K/X	245	Rnf25	ENSMUST00000027357.11:c.734del	ENSMUSP00000027357.5:p.Lys245ArgfsTer31	H-2-Kb	9	24	0	TSLAFSSLL	NA	NetMHC	12.89	NA	NA	60	0.217	58.35	NA	NA	NA	12.89	NA	18.5	NA	98.19966359	NA	134.9739632	SSC_p20	2.057142857	2.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.245	60	0	0	NA	1qC3	chr1-72595512-93413733	6	4	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr1	56891225	56891225	T	G	ENSMUST00000114415.9	1	ENSMUSG00000038331	missense	N/T	213	Satb2	ENSMUST00000114415.9:c.638A>C	ENSMUSP00000110057.3:p.Asn213Thr	H-2-Kb	9	4	8	VNSTYYATV	VNSTYYANV	NetMHC	12.91	6.03	0.467	193	0.249	53.822	44.025	0.818	6.03	12.91	9.3	13.4	93.34907095	111.4576803	78.74989801	94.24319478	SSC_p20	0.171428571	0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.256	193	0	0	NA	1qC1.3	chr1-36799179-72592159	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr1	128300744	128300744	T	C	ENSMUST00000073490.6	2	ENSMUSG00000026354	missense	N/S	1004	Lct	ENSMUST00000073490.6:c.3011A>G	ENSMUSP00000073190.6:p.Asn1004Ser	H-2-Kb	9	5	7	QGVDYYSKL	QGVDYYNKL	NetMHC	37.85	77.13	2.038	138	0.246	127.881	182.193	1.425	77.13	37.85	122.7	55.2	257.1046906	224.4450336	241.6851686	200.5626226	SSC_p20	-0.4	-0.4	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.257	138	0	0	NA	1qE3	chr1-93413734-130737944	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr1	20935005	20935005	T	G	ENSMUST00000189400.6	1	ENSMUSG00000025931	missense	L/V	128	Paqr8	ENSMUST00000189400.6:c.382T>G	ENSMUSP00000141054.1:p.Leu128Val	H-2-Kb	9	3	9	ITYLTCSLV	ITYLTCSLL	NetMHC	51.11	20.64	0.404	111	0.225	138.197	48.33	0.35	20.64	51.11	27.3	120.4	69.36014622	155.9947563	94.8964574	212.4467052	SSC_p20	1.642857143	1.642857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	111	0	0	NA	1qA4	chr1-3216742-34288324	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr1	92982967	92982968	AGT	A	ENSMUST00000169198.2	1	ENSMUSG00000026271	FS	V/X	134	Gpr35	ENSMUST00000169198.2:c.407_408del	ENSMUSP00000126914.1:p.Val136GlyfsTer68	H-2-Kb	9	43	0	AQFQHHCLL	NA	NetMHCpan	57.7	NA	NA	86	0.058	161.534	NA	NA	NA	78.02	NA	57.7	NA	269.8422814	NA	245.0473442	SSC_p20	0.428571429	0.428571429	FALSE	FALSE	FALSE	1	FALSE	0	Strelka2;Vardict	2	0.0581	86	0	0	NA	1qD	chr1-72595512-93413733	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	0.342603206	sgMsh2	cell line
chr1	83116876	83116876	T	C	ENSMUST00000113437.8	1	ENSMUSG00000026166	missense	L/P	18	Ccl20	ENSMUST00000113437.8:c.53T>C	ENSMUSP00000109064.2:p.Leu18Pro	H-2-Kb	9	6	6	LAWVLPAHL	LAWVLLAHL	NetMHCpan	137.7	146.9	1.067	67	0.149	311.472	165.33	0.531	58.19	184.16	146.9	137.7	188.4126249	443.7210173	183.7595844	438.783209	SSC_p20	1.128571429	1.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.177	67	0	0	NA	1qC5	chr1-72595512-93413733	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr1	74594618	74594618	CT	C	ENSMUST00000027357.11	1	ENSMUSG00000026171	FS	K/X	245	Rnf25	ENSMUST00000027357.11:c.734del	ENSMUSP00000027357.5:p.Lys245ArgfsTer31	H-2-Kb	9	26	0	LAFSSLLLL	NA	SMM	159.261	NA	NA	60	0.217	204.075	NA	NA	NA	192.85	NA	215.3	NA	159.261206	NA	229.2186762	SSC_p20	2.342857143	2.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.245	60	0	0	NA	1qC3	chr1-72595512-93413733	6	4	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr1	128236639	128236639	T	C	ENSMUST00000036288.10	5	ENSMUSG00000056211	missense	S/P	1097	R3hdm1	ENSMUST00000036288.10:c.3289T>C	ENSMUSP00000043103.4:p.Ser1097Pro	H-2-Kb	9	4	8	TVLATFPPI	TVLATFPSI	NetMHCpan	156.6	241.4	1.542	195	0.205	337.842	596.246	1.765	373.82	205.67	241.4	156.6	818.6721187	470.0131405	895.8803273	523.901932	SSC_p20	1.285714286	1.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.21	195	0	0	NA	1qE3	chr1-93413734-130737944	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr1	85579187	85579187	CT	C	ENSMUST00000093508.6	1	ENSMUSG00000070034	FS	K/X	385	Sp110	ENSMUST00000093508.6:c.1154del	ENSMUSP00000091226.6:p.Lys385SerfsTer13	H-2-Kb	9	11	1	SAFRMRQEI	NA	NetMHC	222.54	NA	NA	239	0.126	380.963	NA	NA	NA	222.54	NA	325.3	NA	436.6264089	NA	527.5334467	SSC_p20	-0.971428571	-0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1255	239	0	0	NA	1qC5	chr1-72595512-93413733	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	0.740046513	sgMsh2	cell line
chr1	134746867	134746867	A	C	ENSMUST00000121990.1	1	ENSMUSG00000026452	missense	I/L	348	Syt2	ENSMUST00000121990.1:c.1042A>C	ENSMUSP00000112438.1:p.Ile348Leu	H-2-Kb	9	5	7	ESFSFELPF	ESFSFEIPF	SMM	167.923	162.222	0.966	109	0.202	212.067	238.386	1.124	256.86	267.23	260.3	199.1	162.2220929	167.9229287	219.9125427	225.0349638	SSC_p20	0.9	0.9	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.219	109	0	0	NA	1qE4	chr1-130740724-138842236	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr1	46775247	46775247	A	G	ENSMUST00000189749.6	5	ENSMUSG00000101337	missense	M/V	3620	Dnah7c	ENSMUST00000189749.6:c.10858A>G	ENSMUSP00000140430.1:p.Met3620Val	H-2-Kb	9	11	1	VFLDQYEEL	MFLDQYEEL	SMM	216.327	554.766	2.564	316	0.228	274.502	733.154	2.671	824.73	301.12	1645	622	554.7662088	216.3266376	641.5787927	247.8848587	SSC_p20	-1.1	-0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.228	316	0	0	NA	1qC1.1	chr1-36799179-72592159	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr1	127412243	127412243	G	T	ENSMUST00000038361.10	1	ENSMUSG00000036155	missense	V/L	454	Mgat5	ENSMUST00000038361.10:c.1360G>T	ENSMUSP00000038359.4:p.Val454Leu	H-2-Kb	9	6	6	LVYGKLDSF	LVYGKVDSF	SMM	278.042	542.138	1.95	93	0.258	372.202	726.824	1.953	911.51	463.7	1434.9	1078.9	542.1381881	278.0417415	480.0096849	280.704904	SSC_p20	-0.471428571	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.27	93	0	0	NA	1qE3	chr1-93413734-130737944	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr10	5228100	5228100	T	G	ENSMUST00000215295.1	5	ENSMUSG00000096054	missense	K/N	4791	Syne1	ENSMUST00000215295.1:c.14373A>C	ENSMUSP00000150262.1:p.Lys4791Asn	H-2-Db	9	9	3	QANVNEETL	QAKVNEETL	NetMHC	39.37	362.31	9.203	73	0.425	44.8	257.197	5.741	362.31	39.37	353.1	58.3	161.2946639	43.51309752	149.8200715	46.08610447	SSC_p20	-0.957142857	-0.957142857	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.438	73	0	0	NA	10qA1	chr10-3120209-74642645	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr1	174158781	174158781	T	C	ENSMUST00000213748.1	5	ENSMUSG00000055033	missense	F/L	3	Olfr420	ENSMUST00000213748.1:c.7T>C	ENSMUSP00000149052.1:p.Phe3Leu	H-2-Db	9	1	3	MGLSNWTTA	MGFSNWTTA	NetMHC	58.65	200.38	3.417	155	0.265	125.847	225.949	1.795	200.38	58.65	130.3	108.6	287.4881843	143.0935308	251.518538	143.7374712	SSC_p20	-0.142857143	-0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.272	155	0	0	NA	1qH3	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr1	165539831	165539831	A	G	ENSMUST00000027852.14	1	ENSMUSG00000026567	missense	T/A	557	Adcy10	ENSMUST00000027852.14:c.1669A>G	ENSMUSP00000027852.8:p.Thr557Ala	H-2-Db	9	4	8	SFHQNFYAI	SFHQNFYTI	SMM	105.104	62.176	0.592	127	0.291	167.108	96.911	0.58	73.99	141.21	379.5	647.3	62.17560216	105.1041828	119.8312253	193.0056399	SSC_p20	-0.342857143	-0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.293	127	0	0	NA	1qH2.3	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr10	52155111	52155111	A	G	ENSMUST00000020045.9	1	ENSMUSG00000019893	missense	F/S	487	Ros1	ENSMUST00000020045.9:c.1460T>C	ENSMUSP00000020045.3:p.Phe487Ser	H-2-Db	9	8	4	MQLSMSTFL	MQLFMSTFL	NetMHCpan	300.8	437.2	1.453	48	0.25	468.764	682.748	1.456	607.67	354.66	437.2	300.8	862.223787	646.576625	757.8268703	582.8677144	SSC_p20	1.428571429	1.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.266	48	0	0	NA	10qB3	chr10-3120209-74642645	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr1	175153188	175153188	T	C	ENSMUST00000195324.5	5	ENSMUSG00000026527	missense	Y/C	90	Rgs7	ENSMUST00000195324.5:c.269A>G	ENSMUSP00000141380.1:p.Tyr90Cys	H-2-Db	9	7	5	AAHGCFFPI	AAHGYFFPI	NetMHCpan	376.9	606.1	1.608	134	0.187	430.644	828.956	1.925	2188.87	824.3	606.1	376.9	791.8082091	435.1309752	866.1039116	426.1573665	SSC_p20	1.057142857	1.157142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.195	134	0	0	NA	1qH3	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr10	50754122	50754122	G	T	ENSMUST00000035606.9	5	ENSMUSG00000038774	missense	S/I	1769	Ascc3	ENSMUST00000035606.9:c.5306G>T	ENSMUSP00000036726.8:p.Ser1769Ile	H-2-Kb	8	8	4	MNPIYYSL	MNPSYYSL	NetMHC	10.83	12.27	1.133	133	0.383	32.613	36.465	1.118	12.27	10.83	28.9	21.7	44.02911945	43.52512229	62.62388407	64.23030732	SSC_p20	-0.028571429	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.38	133	0	0	NA	10qB3	chr10-3120209-74642645	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr1	174041991	174041991	C	T	ENSMUST00000214690.1	5	ENSMUSG00000045381	missense	L/F	14	Olfr433	ENSMUST00000214690.1:c.40C>T	ENSMUSP00000149005.1:p.Leu14Phe	H-2-Kb	8	7	5	RTFIFAGF	RTFILAGF	NetMHC	11.47	340.48	29.684	157	0.293	27.277	357.183	13.095	340.48	11.47	171.8	19.5	482.7696948	45.7867692	373.8866857	35.05419514	SSC_p20	1.942857143	1.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.287	157	0	0	NA	1qH3	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr1	172246733	172246733	CA	C	ENSMUST00000111243.1	5	ENSMUSG00000007107	FS	W/X	318	Atp1a4	ENSMUST00000111243.1:c.952del	ENSMUSP00000106874.1:p.Trp318GlyfsTer37	H-2-Kb	8	7	5	VSFFGSRL	VSFFWLSI	NetMHCpan	6.8	13.2	1.941	126	0.302	14.817	50.863	3.433	61.62	12.7	13.2	6.8	55.30189331	19.71242255	46.42372661	16.93323751	SSC_p20	0.414285714	0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.298	126	0	0	NA	1qH3	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr1	174448814	174448814	A	G	ENSMUST00000194229.2	3	ENSMUSG00000066671	missense	M/V	64	Olfr220	ENSMUST00000194229.2:c.190A>G	ENSMUSP00000141919.1:p.Met64Val	H-2-Kb	8	11	1	VYFFLSHL	MYFFLSHL	NetMHCpan	9.4	18.4	1.957	180	0.239	45.872	102.23	2.229	79.22	33.03	18.4	9.4	125.2391179	58.71377443	128.7478543	60.77710368	SSC_p20	1.128571429	1.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	180	0	0	NA	1qH3	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr1	172246733	172246733	CA	C	ENSMUST00000111243.1	5	ENSMUSG00000007107	FS	W/X	318	Atp1a4	ENSMUST00000111243.1:c.952del	ENSMUSP00000106874.1:p.Trp318GlyfsTer37	H-2-Kb	8	21	0	WMLSFSLL	NA	NetMHC	40.03	NA	NA	126	0.302	68.051	NA	NA	NA	40.03	NA	56.9	NA	87.44601036	NA	79.2027024	SSC_p20	2.071428571	2.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.298	126	0	0	NA	1qH3	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr1	164257135	164257135	T	C	ENSMUST00000044021.11	1	ENSMUSG00000040918	missense	V/A	198	Slc19a2	ENSMUST00000044021.11:c.593T>C	ENSMUSP00000037561.5:p.Val198Ala	H-2-Kb	8	6	6	ISLTCASV	ISLTCVSV	NetMHC	51.16	308.97	6.039	294	0.252	78.087	277.713	3.556	308.97	51.16	437.3	155.2	246.456343	85.25895396	204.5219854	70.91530907	SSC_p20	1.428571429	1.471428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.249	294	0	0	NA	1qH2.2	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr10	34044091	34044091	G	A	ENSMUST00000048052.6	1	ENSMUSG00000039508	missense	A/V	60	Calhm4	ENSMUST00000048052.6:c.179C>T	ENSMUSP00000042466.5:p.Ala60Val	H-2-Kb	8	4	8	SAFLVVPV	SAFLVVPA	NetMHC	93.28	1313.85	14.085	110	0.291	117.213	797.972	6.808	1313.85	93.28	868.6	112.6	727.3442335	121.8260042	658.7793843	137.0061303	SSC_p20	2.771428571	2.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.304	110	0	0	NA	10qB1	chr10-3120209-74642645	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr10	76182818	76182818	CT	C	ENSMUST00000020450.3	2	ENSMUSG00000020229	FS	L/X	533	Slc5a4a	ENSMUST00000020450.3:c.1604del	ENSMUSP00000020450.3:p.Phe535SerfsTer13	H-2-Kb	8	8	6	AIILFSCV	AIILFFVC	NetMHC	152.67	3859.08	25.277	78	0.064	173.86	2295.733	13.204	3859.08	152.67	7851	261.9	655.752568	181.861178	732.3859428	165.8593656	SSC_p20	3.071428571	3.071428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.078	78	0	0	NA	10qC1	chr10-74643062-81649427	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.459949227	sgMsh2	cell line
chr10	79743534	79743534	T	C	ENSMUST00000020580.12	1	ENSMUSG00000020329	missense	T/A	128	Polrmt	ENSMUST00000020580.12:c.382A>G	ENSMUSP00000020580.6:p.Thr128Ala	H-2-Kb	8	5	7	LTQEFWAL	LTQEFWTL	SMM	129.045	214.655	1.663	119	0.244	166.469	236.66	1.422	958.43	286.43	196.6	168.6	214.6545013	129.0446488	258.6663888	164.3387578	SSC_p20	-0.028571429	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.248	119	0	0	NA	10qC1	chr10-74643062-81649427	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr10	34044091	34044091	G	A	ENSMUST00000048052.6	1	ENSMUSG00000039508	missense	A/V	60	Calhm4	ENSMUST00000048052.6:c.179C>T	ENSMUSP00000042466.5:p.Ala60Val	H-2-Kb	8	8	4	VVPVLILL	VVPALILL	NetMHC	305.21	396.64	1.3	110	0.291	381.081	414.946	1.089	396.64	305.21	390.4	346.5	433.2514252	415.6616909	541.6765067	459.9811133	SSC_p20	3.242857143	3.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.304	110	0	0	NA	10qB1	chr10-3120209-74642645	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr1	173937892	173937892	AT	A	ENSMUST00000129829.7	1	ENSMUSG00000039997	FS	M/X	39	Ifi203	ENSMUST00000129829.7:c.115del	ENSMUSP00000122424.1:p.Met39CysfsTer24	H-2-Kb	9	16	0	IGFSWRTGL	NA	NetMHC	12.97	NA	NA	138	0.196	71.775	NA	NA	NA	12.97	NA	13.5	NA	130.0498932	NA	148.3371737	SSC_p20	-0.1	-9.52E-17	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.187	138	0	0	NA	1qH3	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr1	174448814	174448814	A	G	ENSMUST00000194229.2	3	ENSMUSG00000066671	missense	M/V	64	Olfr220	ENSMUST00000194229.2:c.190A>G	ENSMUSP00000141919.1:p.Met64Val	H-2-Kb	9	10	2	PVYFFLSHL	PMYFFLSHL	SMM	29.793	13.744	0.461	180	0.239	37.756	27.523	0.729	44.85	51.57	32.8	30.3	13.74390042	29.79270937	22.24590099	45.21161284	SSC_p20	1.128571429	1.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	180	0	0	NA	1qH3	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr1	172246733	172246733	CA	C	ENSMUST00000111243.1	5	ENSMUSG00000007107	FS	W/X	318	Atp1a4	ENSMUST00000111243.1:c.952del	ENSMUSP00000106874.1:p.Trp318GlyfsTer37	H-2-Kb	9	23	0	LSFSLLVSL	NA	NetMHCpan	64.8	NA	NA	126	0.302	114.871	NA	NA	NA	102.36	NA	64.8	NA	127.382568	NA	136.536888	SSC_p20	2.4	2.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.298	126	0	0	NA	1qH3	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr10	50754122	50754122	G	T	ENSMUST00000035606.9	5	ENSMUSG00000038774	missense	S/I	1769	Ascc3	ENSMUST00000035606.9:c.5306G>T	ENSMUSP00000036726.8:p.Ser1769Ile	H-2-Kb	9	7	5	IMNPIYYSL	IMNPSYYSL	NetMHCpan	106.8	122.5	1.147	133	0.383	213.697	155.456	0.727	120.49	198.25	122.5	106.8	188.4126249	229.1447967	231.3396105	261.9690589	SSC_p20	-0.028571429	0.457142857	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.38	133	0	0	NA	10qB3	chr10-3120209-74642645	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr1	172246733	172246733	CA	C	ENSMUST00000111243.1	5	ENSMUSG00000007107	FS	W/X	318	Atp1a4	ENSMUST00000111243.1:c.952del	ENSMUSP00000106874.1:p.Trp318GlyfsTer37	H-2-Kb	9	20	0	GWMLSFSLL	NA	SMM	154.921	NA	NA	126	0.302	295.795	NA	NA	NA	319.79	NA	495.6	NA	154.920896	NA	271.8003427	SSC_p20	2.071428571	2.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.298	126	0	0	NA	1qH3	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr10	19849510	19849510	A	G	ENSMUST00000059805.5	1	ENSMUSG00000050473	missense	L/P	200	Slc35d3	ENSMUST00000059805.5:c.599T>C	ENSMUSP00000060589.4:p.Leu200Pro	H-2-Kb	9	4	8	IAVSATPPL	IAVSATPLL	NetMHCpan	274.8	607.2	2.21	52	0.269	365.277	632.215	1.731	657.23	359.78	607.2	274.8	472.1826226	370.7746213	755.5270188	542.312981	SSC_p20	0.728571429	1.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.283	52	0	0	NA	10qA3	chr10-3120209-74642645	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr1	172246733	172246733	CA	C	ENSMUST00000111243.1	5	ENSMUSG00000007107	FS	W/X	318	Atp1a4	ENSMUST00000111243.1:c.952del	ENSMUSP00000106874.1:p.Trp318GlyfsTer37	H-2-Kb	9	21	0	WMLSFSLLV	NA	SMM	192.801	NA	NA	126	0.302	393.804	NA	NA	NA	424.32	NA	1728.5	NA	192.8013187	NA	363.2871195	SSC_p20	2.4	2.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.298	126	0	0	NA	1qH3	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr10	34044091	34044091	G	A	ENSMUST00000048052.6	1	ENSMUSG00000039508	missense	A/V	60	Calhm4	ENSMUST00000048052.6:c.179C>T	ENSMUSP00000042466.5:p.Ala60Val	H-2-Kb	9	4	8	SAFLVVPVL	SAFLVVPAL	NetMHCpan	260.6	103.6	0.398	110	0.291	456.597	235.848	0.517	123.27	447.34	103.6	260.6	348.4255546	491.0322312	376.053816	465.8541836	SSC_p20	3.057142857	3.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.304	110	0	0	NA	10qB1	chr10-3120209-74642645	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr10	26336234	26336234	T	A	ENSMUST00000040219.12	5	ENSMUSG00000039089	missense	E/V	288	L3mbtl3	ENSMUST00000040219.12:c.863A>T	ENSMUSP00000037619.6:p.Glu288Val	H-2-Kb	9	11	1	VVCGYRIKL	EVCGYRIKL	SMMPMBEC	243.36	2139.193	8.79	75	0.28	438.506	5764.019	13.145	8335.17	449.34	7080.6	468.4	4447.438999	427.6711949	2139.193154	243.3604501	SSC_p20	0.1	1.314285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.294	75	0	0	NA	10qA4	chr10-3120209-74642645	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr1	192847134	192847134	A	G	ENSMUST00000155579.7	1	ENSMUSG00000016262	missense	Y/H	125	Sertad4	ENSMUST00000155579.7:c.373T>C	ENSMUSP00000116176.1:p.Tyr125His	H-2-Kb	9	10	2	VHLRRSVLI	VYLRRSVLI	SMM	451.97	325.919	0.721	124	0.234	477.751	393.431	0.824	435.1	490.72	734	686.4	325.9192408	451.9704069	351.7628732	464.7827487	SSC_p20	0.928571429	0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.242	124	0	0	NA	1qH6	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr10	23897365	23897365	T	C	ENSMUST00000041416.7	1	ENSMUSG00000037440	missense	Y/H	97	Vnn1	ENSMUST00000041416.7:c.289T>C	ENSMUSP00000040599.7:p.Tyr97His	H-2-Kb	9	7	5	TIYPHLEEI	TIYPYLEEI	NetMHCpan	162.8	59.8	0.367	27	0.407	280.695	187.481	0.668	155.05	490.72	59.8	162.8	228.6177783	285.1740477	219.9125427	276.216743	SSC_p20	-0.685714286	-0.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.414	27	0	0	NA	10qA4	chr10-3120209-74642645	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr1	185323752	185323752	A	G	ENSMUST00000027921.10	1	ENSMUSG00000026618	missense	M/T	205	Iars2	ENSMUST00000027921.10:c.614T>C	ENSMUSP00000027921.4:p.Met205Thr	H-2-Kb	9	3	9	SAFVRWGVT	SAFVRWGVM	SMMPMBEC	196.449	52.997	0.27	91	0.176	432.451	57.053	0.132	65.61	668.72	51.3	596.3	61.10967866	268.6024688	52.99684305	196.4490803	SSC_p20	0.671428571	1.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.185	91	0	0	NA	1qH5	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr1	175153188	175153188	T	C	ENSMUST00000195324.5	5	ENSMUSG00000026527	missense	Y/C	90	Rgs7	ENSMUST00000195324.5:c.269A>G	ENSMUSP00000141380.1:p.Tyr90Cys	H-2-Kb	9	7	5	AAHGCFFPI	AAHGYFFPI	NetMHCpan	475.8	43.5	0.091	134	0.187	498.69	151.709	0.304	152.67	731.8	43.5	475.8	152.7953016	511.811453	150.7474589	485.5679351	SSC_p20	1.057142857	1.157142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.195	134	0	0	NA	1qH3	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr11	61449691	61449691	A	G	ENSMUST00000054927.13	1	ENSMUSG00000010086	missense	S/P	561	Rnf112	ENSMUST00000054927.13:c.1681T>C	ENSMUSP00000056464.7:p.Ser561Pro	H-2-Db	9	6	6	KAFMDPYTM	KAFMDSYTM	NetMHC	143.52	155.09	1.081	48	0.292	339.983	369.651	1.087	155.09	143.52	128.2	144.7	617.4758832	539.0387667	584.2113633	535.2664216	SSC_p20	-0.071428571	-0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.292	48	0	0	NA	11qB2	chr11-49174503-68204048	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr10	81271396	81271396	T	C	ENSMUST00000220297.1	5	ENSMUSG00000004931	missense	I/T	291	Apba3	ENSMUST00000220297.1:c.872T>C	ENSMUSP00000151985.1:p.Ile291Thr	H-2-Db	9	6	6	HALQTTSYI	HALQTISYI	NetMHC	170.73	199.37	1.168	70	0.243	494.592	394.302	0.797	199.37	170.73	229.4	338.2	702.4574131	702.4574131	559.2036533	650.9835285	SSC_p20	0.185714286	0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.257	70	0	0	NA	10qC1	chr10-74643062-81649427	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr11	43835686	43835686	T	C	ENSMUST00000067258.8	1	ENSMUSG00000050541	missense	S/G	135	Adra1b	ENSMUST00000067258.8:c.403A>G	ENSMUSP00000070200.2:p.Ser135Gly	H-2-Db	9	7	5	ASILGLCAI	ASILSLCAI	SMMPMBEC	393.161	265.809	0.676	113	0.212	445.671	273.24	0.613	280.67	577.5	248.5	460.2	294.86281	431.1416704	265.8091949	393.1606098	SSC_p20	2.928571429	2.928571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.223	113	0	0	NA	11qB1.1	chr11-9068020-49173772	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr10	130112476	130112476	A	G	ENSMUST00000213145.1	5	ENSMUSG00000096747	missense	F/L	105	Olfr823	ENSMUST00000213145.1:c.313T>C	ENSMUSP00000150794.1:p.Phe105Leu	H-2-Kb	8	8	4	TQFLFFAL	TQFFFFAL	NetMHC	5.67	9.98	1.76	177	0.328	7.893	9.722	1.232	9.98	5.67	9.9	12.5	8.805215715	7.847656766	9.544210297	7.938528349	SSC_p20	2.042857143	2.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.324	177	0	0	NA	10qD3	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr11	34688463	34688463	A	T	ENSMUST00000093193.11	1	ENSMUSG00000020143	missense	L/M	708	Dock2	ENSMUST00000093193.11:c.2122T>A	ENSMUSP00000090884.5:p.Leu708Met	H-2-Kb	8	9	3	ATMAYKKL	ATLAYKKL	NetMHCpan	62.7	80.7	1.287	108	0.25	117.441	94.582	0.805	84.03	96.29	80.7	62.7	118.7790917	204.0515979	105.1332282	138.5925865	SSC_p20	-0.328571429	-0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.265	108	0	0	NA	11qA4	chr11-9068020-49173772	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr10	117671739	117671739	A	G	ENSMUST00000020399.5	1	ENSMUSG00000020183	missense	N/D	254	Cpm	ENSMUST00000020399.5:c.760A>G	ENSMUSP00000020399.5:p.Asn254Asp	H-2-Kb	8	11	1	DGYSWYPL	NGYSWYPL	SMMPMBEC	105.133	66.182	0.63	99	0.323	111.803	58.341	0.522	44.26	117.5	50.5	215.1	76.51384027	106.106014	66.18201718	105.1332282	SSC_p20	-0.357142857	-0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.33	99	0	0	NA	10qD2	chr10-81811943-126868997	4	2	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr11	23333806	23333806	A	G	ENSMUST00000180046.7	5	ENSMUSG00000056342	missense	I/V	167	Usp34	ENSMUST00000180046.7:c.499A>G	ENSMUSP00000137430.1:p.Ile167Val	H-2-Kb	8	8	4	IFQVQFPL	IFQIQFPL	SMM	172.48	187.387	1.086	91	0.154	344.13	382.03	1.11	479.8	408.53	431.6	500.8	187.3872337	172.480499	332.4604589	279.7306149	SSC_p20	0.714285714	0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.151	91	0	0	NA	11qA3.2	chr11-9068020-49173772	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.890414529	sgMsh2	cell line
chr11	49341357	49341357	CT	C	ENSMUST00000215014.1	5	ENSMUSG00000045421	FS	L/X	275	Olfr1390	ENSMUST00000215014.1:c.829del	ENSMUSP00000151059.1:p.Tyr277IlefsTer11	H-2-Kb	8	8	6	FVALFILL	FVALFYII	SMM	181.443	1785.418	9.84	383	0.238	354.925	2147.623	6.051	3065.65	490.7	1973.9	713.2	1785.418375	181.4429089	2321.346655	219.1492557	SSC_p20	3.528571429	3.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.243	383	0	0	NA	11qB1.2	chr11-49174503-68204048	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr10	129437268	129437268	T	C	ENSMUST00000204529.2	3	ENSMUSG00000095696	missense	L/P	152	Olfr786	ENSMUST00000204529.2:c.455T>C	ENSMUSP00000145099.1:p.Leu152Pro	H-2-Kb	8	10	2	FPIIFPAL	FLIIFPAL	SMM	114.747	118.506	1.033	210	0.357	378.842	170.833	0.451	219.84	610.54	261.3	732.8	118.5059074	114.746646	121.8260042	147.1431334	SSC_p20	2.028571429	2.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.356	210	0	0	NA	10qD3	chr10-126887223-129526639	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr10	130472110	130472110	CA	C	ENSMUST00000164227.3	5	ENSMUSG00000091511	FS	L/X	753	Vmn2r87	ENSMUST00000164227.3:c.2258del	ENSMUSP00000129215.2:p.Leu753TrpfsTer25	H-2-Kb	8	15	0	ASLWLSWL	NA	SMM	312.421	NA	NA	556	0.311	407.641	NA	NA	NA	717.62	NA	457.4	NA	312.4208431	NA	357.8821189	SSC_p20	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.315	556	0	0	NA	10qD3	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr10	130472110	130472110	CA	C	ENSMUST00000164227.3	5	ENSMUSG00000091511	FS	L/X	753	Vmn2r87	ENSMUST00000164227.3:c.2258del	ENSMUSP00000129215.2:p.Leu753TrpfsTer25	H-2-Kb	8	19	0	LSWLGTFL	NA	SMMPMBEC	307.426	NA	NA	556	0.311	420.694	NA	NA	NA	1101.66	NA	318.1	NA	523.2870654	NA	307.4255792	SSC_p20	1.085714286	1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.315	556	0	0	NA	10qD3	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr10	130112476	130112476	A	G	ENSMUST00000213145.1	5	ENSMUSG00000096747	missense	F/L	105	Olfr823	ENSMUST00000213145.1:c.313T>C	ENSMUSP00000150794.1:p.Phe105Leu	H-2-Kb	9	8	4	TQFLFFALF	TQFFFFALF	NetMHC	22.92	33.98	1.483	177	0.328	39.052	38.472	0.985	33.98	22.92	28.9	38.1	42.96452354	40.00460623	44.08085403	46.3713778	SSC_p20	2.942857143	2.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.324	177	0	0	NA	10qD3	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr10	121596189	121596189	T	C	ENSMUST00000039810.7	5	ENSMUSG00000034667	missense	I/V	935	Xpot	ENSMUST00000039810.7:c.2803A>G	ENSMUSP00000043488.7:p.Ile935Val	H-2-Kb	9	10	2	IVQEFCQAL	IIQEFCQAL	NetMHC	29.19	27.49	0.942	67	0.328	210.663	225.97	1.073	27.49	29.19	92.1	72.9	359.8404656	348.4255546	390.1665199	383.0451784	SSC_p20	0.057142857	0.5	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.351	67	0	0	NA	10qD2	chr10-81811943-126868997	4	2	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr11	59976887	59976887	A	C	ENSMUST00000102693.8	1	ENSMUSG00000000301	missense	F/V	140	Pemt	ENSMUST00000102693.8:c.418T>G	ENSMUSP00000099754.2:p.Phe140Val	H-2-Kb	9	11	1	VVLSSFYAL	FVLSSFYAL	NetMHCpan	37.4	216.3	5.783	98	0.255	69.634	257.114	3.692	158.46	38.55	216.3	37.4	297.9270937	100.7186741	487.8092149	164.1534444	SSC_p20	1.328571429	1.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.277	98	0	0	NA	11qB1.3	chr11-49174503-68204048	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr11	34688463	34688463	A	T	ENSMUST00000093193.11	1	ENSMUSG00000020143	missense	L/M	708	Dock2	ENSMUST00000093193.11:c.2122T>A	ENSMUSP00000090884.5:p.Leu708Met	H-2-Kb	9	11	1	MAYKKLMTV	LAYKKLMTV	NetMHCpan	53.3	93.4	1.752	108	0.25	111.459	136.253	1.222	92.9	63.29	93.4	53.3	179.1059444	159.628341	191.9773533	191.9773533	SSC_p20	0.014285714	0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.265	108	0	0	NA	11qA4	chr11-9068020-49173772	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr10	129754686	129754686	T	A	ENSMUST00000213379.1	5	ENSMUSG00000050478	missense	M/L	255	Olfr807	ENSMUST00000213379.1:c.763A>T	ENSMUSP00000149172.1:p.Met255Leu	H-2-Kb	9	3	9	ISYGSCIFL	ISYGSCIFM	NetMHC	67.13	154.95	2.308	141	0.298	106.451	174.575	1.64	154.95	67.13	136.5	69.6	202.3531643	153.854428	194.2003463	143.301257	SSC_p20	1.585714286	1.585714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.299	141	0	0	NA	10qD3	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr11	34688463	34688463	A	T	ENSMUST00000093193.11	1	ENSMUSG00000020143	missense	L/M	708	Dock2	ENSMUST00000093193.11:c.2122T>A	ENSMUSP00000090884.5:p.Leu708Met	H-2-Kb	9	3	9	IQQHFSATM	IQQHFSATL	NetMHC	108.3	43.99	0.406	108	0.25	432.806	302.966	0.7	43.99	108.3	87	183.1	518.9314595	682.5115418	629.8686601	853.5913393	SSC_p20	-0.242857143	-0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.265	108	0	0	NA	11qA4	chr11-9068020-49173772	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr11	61546578	61546578	A	C	ENSMUST00000179936.7	1	ENSMUSG00000001036	missense	I/S	56	Epn2	ENSMUST00000179936.7:c.167T>G	ENSMUSP00000136950.1:p.Ile56Ser	H-2-Kb	9	6	6	VAFSESMSM	VAFSEIMSM	NetMHCpan	123.9	82.3	0.664	84	0.226	145.532	154.465	1.061	140.62	155.51	82.3	123.9	168.310031	135.5532704	254.8296748	263.7849417	SSC_p20	0.1	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.238	84	0	0	NA	11qB2	chr11-49174503-68204048	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr10	129437268	129437268	T	C	ENSMUST00000204529.2	3	ENSMUSG00000095696	missense	L/P	152	Olfr786	ENSMUST00000204529.2:c.455T>C	ENSMUSP00000145099.1:p.Leu152Pro	H-2-Kb	9	9	3	SFPIIFPAL	SFLIIFPAL	NetMHCpan	184.1	208.8	1.134	210	0.357	392.051	277.016	0.707	198.11	192.39	208.8	184.1	345.2311699	591.7114865	364.9639766	689.0488306	SSC_p20	2.028571429	2.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.356	210	0	0	NA	10qD3	chr10-126887223-129526639	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr10	130472110	130472110	CA	C	ENSMUST00000164227.3	5	ENSMUSG00000091511	FS	L/X	753	Vmn2r87	ENSMUST00000164227.3:c.2258del	ENSMUSP00000129215.2:p.Leu753TrpfsTer25	H-2-Kb	9	9	3	GSWLWGASL	NA	NetMHCpan	270.2	NA	NA	556	0.311	374.862	NA	NA	NA	300.72	NA	270.2	NA	563.7804345	NA	449.0037829	SSC_p20	0.914285714	0.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.315	556	0	0	NA	10qD3	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr11	3291041	3291041	T	A	ENSMUST00000057089.12	1	ENSMUSG00000020453	missense	L/Q	143	Patz1	ENSMUST00000057089.12:c.428T>A	ENSMUSP00000050684.6:p.Leu143Gln	H-2-Kb	9	5	7	MTAAKFQLM	MTAAKFLLM	NetMHC	340.46	567.88	1.668	174	0.264	380.621	410.332	1.078	567.88	340.46	295.3	379.2	376.7992242	382.0410236	443.8640791	464.7827487	SSC_p20	0.671428571	0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.27	174	0	0	NA	11qA1	chr11-3133045-9061525	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr10	129437268	129437268	T	C	ENSMUST00000204529.2	3	ENSMUSG00000095696	missense	L/P	152	Olfr786	ENSMUST00000204529.2:c.455T>C	ENSMUSP00000145099.1:p.Leu152Pro	H-2-Kb	9	5	7	SWLVSFPII	SWLVSFLII	SMM	268.602	322.931	1.202	210	0.357	495.553	719.896	1.453	850.61	484.99	1080	514.6	322.9311952	268.6024688	589.1827186	506.1159219	SSC_p20	2.485714286	2.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.356	210	0	0	NA	10qD3	chr10-126887223-129526639	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr11	7139118	7139118	A	G	ENSMUST00000020706.4	2	ENSMUSG00000020431	missense	M/V	511	Adcy1	ENSMUST00000020706.4:c.1531A>G	ENSMUSP00000020706.4:p.Met511Val	H-2-Kb	9	3	9	VCYLLVQLV	VCYLLVQLM	SMMPMBEC	317.139	191.977	0.605	90	0.244	444.8	282.549	0.635	336.48	498.66	451.7	1247.2	228.6177783	390.9399022	191.9773533	317.1392538	SSC_p20	2.142857143	2.142857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.241	90	0	0	NA	11qA1	chr11-3133045-9061525	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr10	130472110	130472110	CA	C	ENSMUST00000164227.3	5	ENSMUSG00000091511	FS	L/X	753	Vmn2r87	ENSMUST00000164227.3:c.2258del	ENSMUSP00000129215.2:p.Leu753TrpfsTer25	H-2-Kb	9	17	0	LWLSWLGTF	NA	SMM	245.533	NA	NA	556	0.311	456.634	NA	NA	NA	499.03	NA	2307.2	NA	245.5330734	NA	414.2380608	SSC_p20	1.085714286	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.315	556	0	0	NA	10qD3	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr11	23333806	23333806	A	G	ENSMUST00000180046.7	5	ENSMUSG00000056342	missense	I/V	167	Usp34	ENSMUST00000180046.7:c.499A>G	ENSMUSP00000137430.1:p.Ile167Val	H-2-Kb	9	5	7	VAKIFQVQF	VAKIFQIQF	SMMPMBEC	247.315	273.055	1.104	91	0.154	443.564	473.702	1.068	576.63	508.59	724	584.8	370.7746213	378.5384504	273.0549161	247.3147393	SSC_p20	0.485714286	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.151	91	0	0	NA	11qA3.2	chr11-9068020-49173772	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.890414529	sgMsh2	cell line
chr11	98488928	98488928	GT	G	ENSMUST00000103141.3	5	ENSMUSG00000018168	FS	K/X	171	Ikzf3	ENSMUST00000103141.3:c.513del	ENSMUSP00000099430.3:p.Lys171AsnfsTer88	H-2-Db	9	57	0	RSTRNAAEL	NA	NetMHC	122.01	NA	NA	89	0.27	138.556	NA	NA	NA	122.01	NA	192	NA	131.7103792	NA	145.4018727	SSC_p20	-0.685714286	-0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.255	89	0	0	NA	11qD	chr11-94334232-103387642	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr11	98250334	98250334	AG	A	ENSMUST00000107538.1	1	ENSMUSG00000003119	FS	R/X	1467	Cdk12	ENSMUST00000107538.1:c.4405del	ENSMUSP00000103162.1:p.Ala1469LeufsTer35	H-2-Db	9	34	0	NALKDSFPI	NA	NetMHC	176.49	NA	NA	69	0.188	314.485	NA	NA	NA	176.49	NA	291.2	NA	337.7691648	NA	345.5970287	SSC_p20	0.185714286	0.185714286	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;Vardict	3	0.197	69	0	0	NA	11qD	chr11-94334232-103387642	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr11	74365244	74365244	A	G	ENSMUST00000216362.1	5	ENSMUSG00000058275	missense	T/A	192	Olfr412	ENSMUST00000216362.1:c.574A>G	ENSMUSP00000149922.1:p.Thr192Ala	H-2-Db	9	10	2	NAHINHMML	NTHINHMML	NetMHC	219.11	3426.81	15.64	199	0.211	247.63	2068.108	8.352	3426.81	219.11	1739.6	222.6	1772.637775	272.659102	2363.578332	413.5899718	SSC_p20	0.314285714	0.314285714	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.212	199	0	0	NA	11qB5	chr11-68212741-82929860	5.76746429	5.76746429	0	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr11	100498252	100498252	A	G	ENSMUST00000107389.7	1	ENSMUSG00000020917	missense	V/A	568	Acly	ENSMUST00000107389.7:c.1703T>C	ENSMUSP00000103012.1:p.Val568Ala	H-2-Db	9	10	2	DALINFASL	DVLINFASL	SMM	77.736	497.302	6.397	122	0.23	188.563	1493.167	7.919	4361.29	281.94	2378.8	287	497.3017643	77.73560805	607.5331778	95.18532564	SSC_p20	1.771428571	1.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.233	122	0	0	NA	11qD	chr11-94334232-103387642	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr11	97181660	97181660	T	C	ENSMUST00000001479.4	1	ENSMUSG00000001440	missense	T/A	150	Kpnb1	ENSMUST00000001479.4:c.448A>G	ENSMUSP00000001479.3:p.Thr150Ala	H-2-Db	9	10	2	SALEAIGYI	STLEAIGYI	NetMHCpan	418.4	2939.3	7.025	302	0.225	447.643	3137.803	7.01	4778.06	436.49	2939.3	418.4	2982.771604	458.7963984	3292.835233	576.1956828	SSC_p20	1.342857143	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	302	0	0	NA	11qD	chr11-94334232-103387642	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr11	94465827	94465827	A	T	ENSMUST00000100561.9	1	ENSMUSG00000020866	missense	I/N	161	Cacna1g	ENSMUST00000100561.9:c.482T>A	ENSMUSP00000098127.3:p.Ile161Asn	H-2-Db	9	7	5	FFIVNAGML	FFIVIAGML	SMM	159.448	7544.318	47.315	96	0.25	338.685	16773.919	49.527	27545.88	456.28	22744.2	1425.2	7544.318243	159.4483392	10803.63741	221.0904583	SSC_p20	1.757142857	1.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.248	96	0	0	NA	11qD	chr11-94334232-103387642	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr11	116607343	116607343	T	C	ENSMUST00000103028.7	1	ENSMUSG00000020806	missense	N/S	10	Rhbdf2	ENSMUST00000103028.7:c.29A>G	ENSMUSP00000099317.1:p.Asn10Ser	H-2-Db	9	3	8	SADKNGSSL	SADKNGSNL	NetMHCpan	264.2	514.2	1.946	47	0.362	491.14	788.8	1.606	1790.39	859.51	514.2	264.2	838.7257951	517.1541332	738.8733457	465.1253395	SSC_p20	-1.3	-1.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.366	47	0	0	NA	11qE2	chr11-112710790-121956668	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr11	100498252	100498252	A	G	ENSMUST00000107389.7	1	ENSMUSG00000020917	missense	V/A	568	Acly	ENSMUST00000107389.7:c.1703T>C	ENSMUSP00000103012.1:p.Val568Ala	H-2-Kb	8	11	1	ALINFASL	VLINFASL	NetMHC	16.28	5.31	0.326	122	0.23	34.371	10.662	0.31	5.31	16.28	8.3	24.1	14.41252256	54.29252	13.02386842	44.64162552	SSC_p20	1.771428571	1.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.233	122	0	0	NA	11qD	chr11-94334232-103387642	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr11	115822071	115822071	GA	G	ENSMUST00000021134.9	1	ENSMUSG00000020781	FS	R/X	461	Tsen54	ENSMUST00000021134.9:c.1388del	ENSMUSP00000021134.3:p.Asn463ThrfsTer28	H-2-Kb	8	8	6	ATFRKTAL	ATFRKNSP	NetMHCpan	107.7	12589.3	116.892	117	0.256	143.935	9990.463	69.41	19710.55	129.11	12589.3	107.7	7391.626265	173.6760767	7290.209351	158.7596015	SSC_p20	-0.2	-0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.259	117	0	0	NA	11qE2	chr11-112710790-121956668	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr11	119440808	119440808	A	G	ENSMUST00000093902.11	5	ENSMUSG00000070327	missense	H/R	2282	Rnf213	ENSMUST00000093902.11:c.6845A>G	ENSMUSP00000091429.5:p.His2282Arg	H-2-Kb	8	5	7	MTFIGFRL	MTFIGFHL	NetMHCpan	34.6	36.6	1.058	216	0.241	68.355	87.554	1.281	140.39	135.54	36.6	34.6	96.99291239	74.94454029	78.11600059	61.76465217	SSC_p20	1.185714286	1.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.245	216	0	0	NA	11qE2	chr11-112710790-121956668	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr11	98152821	98152821	AC	A	ENSMUST00000092735.11	1	ENSMUSG00000018160	FS	V/X	595	Med1	ENSMUST00000092735.11:c.1783del	ENSMUSP00000090411.5:p.Val595PhefsTer7	H-2-Kb	8	9	3	FMFFFSFF	FMVFFFFF	SMMPMBEC	119.053	1020.328	8.57	41	0.293	135.28	1271.189	9.397	1321.31	138.51	4097.2	147.2	1221.068422	132.0504848	1020.328459	119.0529058	SSC_p20	2.157142857	2.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.3	41	0	0	NA	11qD	chr11-94334232-103387642	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr11	96581344	96581344	A	C	ENSMUST00000107662.8	1	ENSMUSG00000057058	missense	T/P	148	Skap1	ENSMUST00000107662.8:c.442A>C	ENSMUSP00000103289.2:p.Thr148Pro	H-2-Kb	8	7	5	SRYSPAHL	SRYSTAHL	SMM	174.88	169.723	0.971	229	0.231	210.344	161.194	0.766	151.88	220.36	782.2	1165.3	169.7227266	174.8799418	152.6651821	200.3272365	SSC_p20	-0.828571429	-0.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.229	229	0	0	NA	11qD	chr11-94334232-103387642	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr11	96581344	96581344	A	C	ENSMUST00000107662.8	1	ENSMUSG00000057058	missense	T/P	148	Skap1	ENSMUST00000107662.8:c.442A>C	ENSMUSP00000103289.2:p.Thr148Pro	H-2-Kb	8	9	3	YSPAHLAL	YSTAHLAL	SMM	236.45	371.313	1.57	229	0.231	284.425	775.994	2.728	1039.72	259.55	1012.8	309.3	371.3128679	236.4503711	539.1877292	350.5419514	SSC_p20	0.8	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.229	229	0	0	NA	11qD	chr11-94334232-103387642	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr11	96581344	96581344	A	C	ENSMUST00000107662.8	1	ENSMUSG00000057058	missense	T/P	148	Skap1	ENSMUST00000107662.8:c.442A>C	ENSMUSP00000103289.2:p.Thr148Pro	H-2-Kb	8	5	7	SSSRYSPA	SSSRYSTA	NetMHC	265.14	1280.31	4.829	229	0.231	396.626	1171.908	2.955	1280.31	265.14	1961.3	1087.9	1063.506136	425.3436955	963.2521787	367.908651	SSC_p20	-1.142857143	-1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.229	229	0	0	NA	11qD	chr11-94334232-103387642	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr11	72058021	72058021	G	A	ENSMUST00000075258.12	1	ENSMUSG00000040543	missense	R/W	769	Pitpnm3	ENSMUST00000075258.12:c.2305C>T	ENSMUSP00000074737.6:p.Arg769Trp	H-2-Kb	8	9	3	VVWHWQDL	VVRHWQDL	NetMHCpan	164	1200.7	7.321	112	0.259	222.002	907.754	4.089	1202.31	270.69	1200.7	164	614.8086937	260.4593785	592.570463	183.5439188	SSC_p20	-0.571428571	-0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.256	112	0	0	NA	11qB4	chr11-68212741-82929860	5.76746429	5.76746429	0	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr11	80170715	80170715	G	A	ENSMUST00000021050.13	1	ENSMUSG00000020709	missense	R/H	232	Adap2	ENSMUST00000021050.13:c.695G>A	ENSMUSP00000021050.7:p.Arg232His	H-2-Kb	8	10	2	AHLQYLKL	ARLQYLKL	SMM	206.89	549.212	2.655	162	0.191	245.659	1134.326	4.617	1719.44	279.12	2162.2	288.8	549.2119775	206.8902384	516.1072977	212.1973715	SSC_p20	-0.071428571	-0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.196	162	0	0	NA	11qB5	chr11-68212741-82929860	5.76746429	5.76746429	0	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr11	69478799	69478799	T	G	ENSMUST00000108659.1	5	ENSMUSG00000005237	missense	E/A	1617	Dnah2	ENSMUST00000108659.1:c.4850A>C	ENSMUSP00000104299.1:p.Glu1617Ala	H-2-Kb	8	6	6	SSSKWAAV	SSSKWEAV	NetMHC	389.22	5810.43	14.928	81	0.259	411.521	4252.471	10.334	5810.43	389.22	5555.5	961.1	2949.442949	422.4156501	2908.975074	400.6268017	SSC_p20	0.2	0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.278	81	0	0	NA	11qB3	chr11-68212741-82929860	5.76746429	5.76746429	0	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr11	98488928	98488928	GT	G	ENSMUST00000103141.3	5	ENSMUSG00000018168	FS	K/X	171	Ikzf3	ENSMUST00000103141.3:c.513del	ENSMUSP00000099430.3:p.Lys171AsnfsTer88	H-2-Kb	8	68	0	RTLTWGTL	NA	SMMPMBEC	208.324	NA	NA	89	0.27	253.828	NA	NA	NA	456.15	NA	261.2	NA	246.456343	NA	208.324333	SSC_p20	0.6	0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.255	89	0	0	NA	11qD	chr11-94334232-103387642	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr11	103186660	103186660	CG	C	ENSMUST00000042286.11	1	ENSMUSG00000055805	FS	R/X	282	Fmnl1	ENSMUST00000042286.11:c.848del	ENSMUSP00000046296.5:p.Gly283GlufsTer26	H-2-Kb	8	23	0	TSRRFAGS	NA	SMM	79.752	NA	NA	95	0.053	309.651	NA	NA	NA	511.72	NA	2336.7	NA	79.75170931	NA	107.5820957	SSC_p20	-0.914285714	-0.9	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0526	95	0	0	NA	11qE1	chr11-94334232-103387642	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.310170889	sgMsh2	cell line
chr11	116023510	116023510	C	A	ENSMUST00000106454.7	5	ENSMUSG00000016559	missense	G/V	103	H3f3b	ENSMUST00000106454.7:c.308G>T	ENSMUSP00000102062.1:p.Gly103Val	H-2-Kb	8	11	1	VLFEDTNL	GLFEDTNL	SMMPMBEC	139.553	1457.941	10.447	143	0.238	257.434	4738.713	18.408	11220.79	524.1	7134.6	368.4	2342.825811	146.4670721	1457.94117	139.5532644	SSC_p20	-0.114285714	-0.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.243	143	0	0	NA	11qE2	chr11-112710790-121956668	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr11	117772845	117772845	T	C	ENSMUST00000026659.9	1	ENSMUSG00000025572	missense	I/V	514	Tmc6	ENSMUST00000026659.9:c.1540A>G	ENSMUSP00000026659.3:p.Ile514Val	H-2-Kb	8	10	2	LVLKMAVL	LILKMAVL	SMMPMBEC	395.13	281.67	0.713	100	0.32	457.257	401.56	0.878	565.93	825.08	490.7	423.9	312.4208431	490.6140712	281.6696149	395.1299959	SSC_p20	2.257142857	2.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.319	100	0	0	NA	11qE2	chr11-112710790-121956668	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr11	94334532	94334532	A	G	ENSMUST00000107818.8	5	ENSMUSG00000020864	missense	T/A	130	Ankrd40	ENSMUST00000107818.8:c.388A>G	ENSMUSP00000103448.2:p.Thr130Ala	H-2-Kb	8	6	6	FPFIYAPA	FPFIYTPA	SMMPMBEC	111.363	324.893	2.917	181	0.243	485.551	890.63	1.834	2975.36	844.12	1418.4	870.2	362.8607551	126.9813676	324.8927349	111.3627636	SSC_p20	0.914285714	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.248	181	0	0	NA	11qD	chr11-94334232-103387642	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr11	98488928	98488928	GT	G	ENSMUST00000103141.3	5	ENSMUSG00000018168	FS	K/X	171	Ikzf3	ENSMUST00000103141.3:c.513del	ENSMUSP00000099430.3:p.Lys171AsnfsTer88	H-2-Kb	9	62	0	AAELFFRTL	NA	NetMHC	89.08	NA	NA	89	0.27	200.048	NA	NA	NA	89.08	NA	91.6	NA	330.4532291	NA	308.4963287	SSC_p20	0.642857143	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.255	89	0	0	NA	11qD	chr11-94334232-103387642	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr11	106149600	106149600	AC	A	ENSMUST00000002044.9	1	ENSMUSG00000020700	FS	D/X	330	Map3k3	ENSMUST00000002044.9:c.994del	ENSMUSP00000002044.9:p.Arg332ValfsTer75	H-2-Kb	9	5	9	VAVQYLDPV	VAVQYLDPR	NetMHC	103.32	4484.42	43.403	188	0.239	225.888	3275.495	14.501	4484.42	103.32	11112.2	198.7	1820.161819	276.7642557	2066.569426	253.0754397	SSC_p20	0.328571429	0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.245	188	0	0	NA	11qE1	chr11-103394392-112692004	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr11	67211360	67211360	C	A	ENSMUST00000124516.7	1	ENSMUSG00000056328	missense	R/S	826	Myh1	ENSMUST00000124516.7:c.2476C>A	ENSMUSP00000117569.1:p.Arg826Ser	H-2-Kb	9	6	6	IQYNVSAFM	IQYNVRAFM	NetMHC	125.35	144.71	1.154	241	0.266	385.659	420.869	1.091	144.71	125.35	131.9	140.2	830.0609824	631.1171763	697.02764	656.5230826	SSC_p20	0.728571429	0.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.263	241	0	0	NA	11qB3	chr11-49174503-68204048	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr11	96581344	96581344	A	C	ENSMUST00000107662.8	1	ENSMUSG00000057058	missense	T/P	148	Skap1	ENSMUST00000107662.8:c.442A>C	ENSMUSP00000103289.2:p.Thr148Pro	H-2-Kb	9	9	3	YSPAHLALM	YSTAHLALM	NetMHC	132.73	417.47	3.145	229	0.231	249.158	480.61	1.929	417.47	132.73	534.5	167.1	455.1033161	331.2150024	506.1159219	397.4202571	SSC_p20	1.185714286	1.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.229	229	0	0	NA	11qD	chr11-94334232-103387642	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr11	68771959	68771959	A	G	ENSMUST00000102611.9	1	ENSMUSG00000020900	missense	R/G	613	Myh10	ENSMUST00000102611.9:c.1837A>G	ENSMUSP00000099671.3:p.Arg613Gly	H-2-Kb	9	8	4	SSDGFVAEL	SSDRFVAEL	NetMHC	147.22	32.97	0.224	141	0.199	391.99	310.276	0.792	32.97	147.22	207.4	670.9	413.1521337	383.8044448	425.8434778	400.1750427	SSC_p20	0.742857143	0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.197	141	0	0	NA	11qB3	chr11-68212741-82929860	5.76746429	5.76746429	0	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr11	80170715	80170715	G	A	ENSMUST00000021050.13	1	ENSMUSG00000020709	missense	R/H	232	Adap2	ENSMUST00000021050.13:c.695G>A	ENSMUSP00000021050.7:p.Arg232His	H-2-Kb	9	4	8	FNALRAAHL	FNALRAARL	NetMHC	212.45	183.79	0.865	162	0.191	290.258	272.082	0.937	183.79	212.45	273.7	288.7	270.4643321	291.8166046	322.2923521	361.6179668	SSC_p20	0.757142857	0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.196	162	0	0	NA	11qB5	chr11-68212741-82929860	5.76746429	5.76746429	0	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr11	80170715	80170715	G	A	ENSMUST00000021050.13	1	ENSMUSG00000020709	missense	R/H	232	Adap2	ENSMUST00000021050.13:c.695G>A	ENSMUSP00000021050.7:p.Arg232His	H-2-Kb	9	9	3	AAHLQYLKL	AARLQYLKL	NetMHCpan	200.8	397.4	1.979	162	0.191	245.507	319.289	1.301	293.72	214.16	397.4	200.8	320.7081525	296.558243	317.8703353	276.8534884	SSC_p20	-0.071428571	0.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.196	162	0	0	NA	11qB5	chr11-68212741-82929860	5.76746429	5.76746429	0	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr11	87035223	87035223	T	C	ENSMUST00000020804.7	1	ENSMUSG00000061666	missense	T/A	299	Gdpd1	ENSMUST00000020804.7:c.895A>G	ENSMUSP00000020804.7:p.Thr299Ala	H-2-Kb	9	9	3	VMADYPTKL	VMTDYPTKL	NetMHCpan	134	233	1.739	132	0.242	178.725	248.628	1.391	288.51	222.06	233	134	258.8868552	177.8729877	238.3691237	179.5767056	SSC_p20	-0.771428571	0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	132	0	0	NA	11qC	chr11-83350706-94334231	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr11	66145269	66145269	A	T	ENSMUST00000080665.9	5	ENSMUSG00000056752	missense	D/E	438	Dnah9	ENSMUST00000080665.9:c.1314T>A	ENSMUSP00000079494.3:p.Asp438Glu	H-2-Kb	9	5	7	LVFVRLEGF	LVFVRLDGF	SMM	175.837	200.498	1.14	91	0.253	217.209	246.217	1.134	266.36	239.77	675.3	414.5	200.4979793	175.8368925	226.073678	194.6480243	SSC_p20	0.742857143	1.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe	3	0.261	91	0	0	NA	11qB3	chr11-49174503-68204048	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr11	67243457	67243457	T	G	ENSMUST00000018632.10	5	ENSMUSG00000057003	missense	F/V	313	Myh4	ENSMUST00000018632.10:c.937T>G	ENSMUSP00000018632.4:p.Phe313Val	H-2-Kb	9	11	1	VAYVSQGEI	FAYVSQGEI	SMM	235.565	696.803	2.958	295	0.203	269.225	768.373	2.854	913.58	300.05	675.5	255.8	696.8029811	235.5645857	839.9433576	282.6506575	SSC_p20	-0.114285714	0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.209	295	0	0	NA	11qB3	chr11-49174503-68204048	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr11	88964817	88964817	AG	A	ENSMUST00000061938.13	1	ENSMUSG00000057534	FS	P/X	140	Elobl	ENSMUST00000061938.13:c.419del	ENSMUSP00000103534.1:p.Pro140LeufsTer29	H-2-Kb	9	21	0	INFLMTTPC	NA	NetMHCpan	235.2	NA	NA	231	0.208	354.488	NA	NA	NA	428.61	NA	235.2	NA	395.4667729	NA	313.5089908	SSC_p20	1.142857143	1.157142857	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.222	231	0	0	NA	11qC	chr11-83350706-94334231	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr11	115822071	115822071	GA	G	ENSMUST00000021134.9	1	ENSMUSG00000020781	FS	R/X	461	Tsen54	ENSMUST00000021134.9:c.1388del	ENSMUSP00000021134.3:p.Asn463ThrfsTer28	H-2-Kb	9	7	7	VATFRKTAL	VATFRKNSP	SMMPMBEC	250.179	1950.967	7.798	117	0.256	378.231	10698.049	28.284	19445.13	487.24	24150.8	959.7	1180.61963	269.2216614	1950.967344	250.1785091	SSC_p20	-0.2	-0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.259	117	0	0	NA	11qE2	chr11-112710790-121956668	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr11	98152821	98152821	AC	A	ENSMUST00000092735.11	1	ENSMUSG00000018160	FS	V/X	595	Med1	ENSMUST00000092735.11:c.1783del	ENSMUSP00000090411.5:p.Val595PhefsTer7	H-2-Kb	9	7	5	LEFMFFFSF	LEFMVFFFF	SMM	152.093	1559.948	10.257	41	0.293	326.93	3466.529	10.603	5373.11	500.31	11273.5	2074.9	1559.947563	152.0932709	1337.365144	153.5500634	SSC_p20	2.157142857	2.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.3	41	0	0	NA	11qD	chr11-94334232-103387642	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr11	66145267	66145267	C	T	ENSMUST00000080665.9	5	ENSMUSG00000056752	missense	G/D	439	Dnah9	ENSMUST00000080665.9:c.1316G>A	ENSMUSP00000079494.3:p.Gly439Asp	H-2-Kb	9	4	8	LVFVRLDDF	LVFVRLDGF	SMMPMBEC	346.937	226.074	0.652	91	0.253	476.883	246.217	0.516	266.36	547.22	675.3	1626.6	200.4979793	406.5462879	226.073678	346.9365057	SSC_p20	0.3	1.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe	3	0.261	91	0	0	NA	11qB3	chr11-49174503-68204048	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr11	102886351	102886351	A	G	ENSMUST00000100369.3	NA	ENSMUSG00000075510	missense	H/R	327	Fam187a	ENSMUST00000100369.3:c.980A>G	ENSMUSP00000097938.3:p.His327Arg	H-2-Kb	9	7	5	VFIDRGNHL	VFIDHGNHL	SMMPMBEC	265.003	291.239	1.099	139	0.295	419.914	404.055	0.962	516.87	568.74	648.9	885.7	280.61443	271.0878168	291.2393144	265.0025177	SSC_p20	-0.971428571	-0.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.292	139	0	0	NA	11qE1	chr11-94334232-103387642	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr11	105281103	105281103	C	A	ENSMUST00000106941.8	1	ENSMUSG00000020694	missense	L/M	700	Tlk2	ENSMUST00000106941.8:c.2098C>A	ENSMUSP00000102554.2:p.Leu700Met	H-2-Kb	9	11	1	MAYRKEDRI	LAYRKEDRI	SMMPMBEC	333.618	333.618	1	88	0.216	456.786	545.641	1.195	710.12	573.86	1874.3	1143.1	381.1623536	339.7113053	333.6184037	333.6184037	SSC_p20	-2.385714286	-1.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.213	88	0	0	NA	11qE1	chr11-103394392-112692004	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr11	106149600	106149600	AC	A	ENSMUST00000002044.9	1	ENSMUSG00000020700	FS	D/X	330	Map3k3	ENSMUST00000002044.9:c.994del	ENSMUSP00000002044.9:p.Arg332ValfsTer75	H-2-Kb	9	18	0	VQTVRMPSL	NA	NetMHCpan	416.3	NA	NA	188	0.239	453.614	NA	NA	NA	635.44	NA	416.3	NA	456.1524376	NA	451.0762902	SSC_p20	0.328571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.245	188	0	0	NA	11qE1	chr11-103394392-112692004	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr12	59016937	59016937	AT	A	ENSMUST00000021379.7	1	ENSMUSG00000060121	FS	H/X	98	Gemin2	ENSMUST00000021379.7:c.298del	ENSMUSP00000021379.6:p.Ser100GlnfsTer73	H-2-Db	9	44	0	KAGKNFVWV	NA	NetMHC	86.09	NA	NA	155	0.2	384.807	NA	NA	NA	86.09	NA	198.7	NA	637.7052612	NA	570.9130891	SSC_p20	0.357142857	0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.204	155	0	0	NA	12qC1	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr12	59016937	59016937	AT	A	ENSMUST00000021379.7	1	ENSMUSG00000060121	FS	H/X	98	Gemin2	ENSMUST00000021379.7:c.298del	ENSMUSP00000021379.6:p.Ser100GlnfsTer73	H-2-Kb	8	72	0	IMYKLVFL	NA	NetMHCpan	16.9	NA	NA	155	0.2	25.226	NA	NA	NA	18.92	NA	16.9	NA	31.53116375	NA	32.71447838	SSC_p20	1.614285714	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.204	155	0	0	NA	12qC1	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr12	59016937	59016937	AT	A	ENSMUST00000021379.7	1	ENSMUSG00000060121	FS	H/X	98	Gemin2	ENSMUST00000021379.7:c.298del	ENSMUSP00000021379.6:p.Ser100GlnfsTer73	H-2-Kb	8	33	0	VMWQCQNL	NA	NetMHC	31.19	NA	NA	155	0.2	64.66	NA	NA	NA	31.19	NA	71.9	NA	67.41243274	NA	61.9070344	SSC_p20	-0.457142857	-0.4	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.204	155	0	0	NA	12qC1	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr12	76564382	76564382	T	C	ENSMUST00000075249.5	1	ENSMUSG00000052609	missense	V/A	231	Plekhg3	ENSMUST00000075249.5:c.692T>C	ENSMUSP00000074729.4:p.Val231Ala	H-2-Kb	8	10	2	RALKYHLL	RVLKYHLL	NetMHCpan	46.6	48	1.03	140	0.271	81.358	92.716	1.14	72.52	51.61	48	46.6	112.911974	111.1066364	114.482736	123.8055176	SSC_p20	0.685714286	0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.269	140	0	0	NA	12qC3	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr12	108361203	108361203	T	C	ENSMUST00000021684.5	1	ENSMUSG00000021259	missense	F/L	425	Cyp46a1	ENSMUST00000021684.5:c.1273T>C	ENSMUSP00000021684.4:p.Phe425Leu	H-2-Kb	8	11	1	LTYFPFSL	FTYFPFSL	NetMHCpan	22.8	31.8	1.395	110	0.173	102.142	85.132	0.833	67.05	60.82	31.8	22.8	103.2143305	143.4630303	134.1961326	157.666708	SSC_p20	0.714285714	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.186	110	0	0	NA	12qF1	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr12	113357518	113357518	T	C	ENSMUST00000223179.1	NA	ENSMUSG00000076615	missense	K/R	374	Ighg3	ENSMUST00000223179.1:c.1120A>G	ENSMUSP00000152559.1:p.Lys374Arg	H-2-Kb	8	10	2	VRWIFSSV	VKWIFSSV	NetMHC	129.56	120.6	0.931	103	0.194	141.385	108.131	0.765	120.6	129.56	160.3	222.3	95.66211974	149.1900983	91.56721386	133.5795574	SSC_p20	0.642857143	0.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.201	103	0	0	NA	12qF1	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr12	13390999	13390999	AC	A	ENSMUST00000042953.9	5	ENSMUSG00000020576	FS	T/X	1110	Nbas	ENSMUST00000042953.9:c.3329del	ENSMUSP00000036082.8:p.Thr1110SerfsTer31	H-2-Kb	8	30	0	VAWKTSTL	NA	NetMHCpan	102.8	NA	NA	108	0.176	200.5	NA	NA	NA	164.55	NA	102.8	NA	289.5609548	NA	236.4503711	SSC_p20	-0.2	-0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.166	108	0	0	NA	12qA1.1	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	0.978866304	sgMsh2	cell line
chr12	79261656	79261656	C	T	ENSMUST00000021547.7	1	ENSMUSG00000066440	missense	D/N	1705	Zfyve26	ENSMUST00000021547.7:c.5113G>A	ENSMUSP00000021547.6:p.Asp1705Asn	H-2-Kb	8	6	6	IGFTLNEV	IGFTLDEV	NetMHCpan	303.9	1187.3	3.907	139	0.144	375.252	970.102	2.585	1333.11	383.96	1187.3	303.9	696.209588	367.908651	752.9046857	382.5956254	SSC_p20	0.385714286	0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.147	139	0	0	NA	12qC3	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	0.866827389	sgMsh2	cell line
chr13	13002264	13002264	T	G	ENSMUST00000110594.3	1	ENSMUSG00000079092	missense	N/T	26	Prl2c2	ENSMUST00000110594.3:c.77A>C	ENSMUSP00000106224.2:p.Asn26Thr	H-2-Kb	8	5	7	SSLLWKTV	SSLLWKNV	SMMPMBEC	367.062	128.452	0.35	137	0.234	405.23	136.123	0.336	80.4	413.06	202.2	397.4	143.7937467	427.3069928	128.4517425	367.0624846	SSC_p20	0.785714286	0.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.247	137	0	0	NA	13qA1	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr13	9662244	9662244	CA	C	ENSMUST00000174552.7	1	ENSMUSG00000048264	FS	K/X	1468	Dip2c	ENSMUST00000174552.7:c.4405del	ENSMUSP00000133806.1:p.Ser1469ValfsTer14	H-2-Kb	8	12	1	VSQNVLSL	NA	SMM	218.645	NA	NA	118	0.314	371.865	NA	NA	NA	425.5	NA	654	NA	218.6452264	NA	318.2291802	SSC_p20	0.457142857	0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.312	118	0	0	NA	13qA1	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr12	54685943	54685943	TG	T	ENSMUST00000161592.7	1	ENSMUSG00000054302	FS	H/X	127	Eapp	ENSMUST00000161592.7:c.381del	ENSMUSP00000123698.1:p.His127GlnfsTer52	H-2-Kb	8	53	0	SLFQTVML	NA	SMMPMBEC	306.719	NA	NA	154	0.448	372.068	NA	NA	NA	617.01	NA	379.6	NA	364.5356443	NA	306.71852	SSC_p20	1.757142857	1.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.448	154	0	0	NA	12qC1	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	3	1	sgMsh2	cell line
chr12	72477207	72477207	A	G	ENSMUST00000162159.7	1	ENSMUSG00000021090	missense	N/S	729	Lrrc9	ENSMUST00000162159.7:c.2186A>G	ENSMUSP00000124394.1:p.Asn729Ser	H-2-Kb	8	5	7	DVYHLYSL	DVYHLYNL	NetMHCpan	351.6	232.6	0.662	174	0.138	440.275	217.158	0.493	455.13	926.68	232.6	351.6	170.8991883	419.5077612	201.7158386	461.0414792	SSC_p20	0.742857143	0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.146	174	0	0	NA	12qC3	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	0.860930604	sgMsh2	cell line
chr12	72304133	72304133	A	T	ENSMUST00000078505.13	1	ENSMUSG00000021087	missense	F/Y	434	Rtn1	ENSMUST00000078505.13:c.1301T>A	ENSMUSP00000077594.7:p.Phe434Tyr	H-2-Kb	9	6	6	SGYVSYGHV	SGYVSFGHV	NetMHC	9.91	11.65	1.176	47	0.362	79.315	105.209	1.326	11.65	9.91	20.7	23.7	189.7186388	134.9304597	209.0499173	147.6556263	SSC_p20	0.2	0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.369	47	0	0	NA	12qC3	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr12	51774736	51774736	A	C	ENSMUST00000042052.8	5	ENSMUSG00000035247	missense	L/V	1057	Hectd1	ENSMUST00000042052.8:c.3169T>G	ENSMUSP00000046766.8:p.Leu1057Val	H-2-Kb	9	3	9	SSFVFVRKV	SSFVFVRKL	NetMHC	11.42	5.76	0.504	171	0.17	102.897	45.252	0.44	5.76	11.42	5.5	15.2	84.74420308	190.5943402	91.88613834	205.7074402	SSC_p20	1.4	1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.182	171	0	0	NA	12qB3	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr12	59016937	59016937	AT	A	ENSMUST00000021379.7	1	ENSMUSG00000060121	FS	H/X	98	Gemin2	ENSMUST00000021379.7:c.298del	ENSMUSP00000021379.6:p.Ser100GlnfsTer73	H-2-Kb	9	72	0	IMYKLVFLL	NA	SMM	46.463	NA	NA	155	0.2	52.197	NA	NA	NA	60.54	NA	48.9	NA	46.46329446	NA	55.49450731	SSC_p20	1.885714286	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.204	155	0	0	NA	12qC1	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr12	76564382	76564382	T	C	ENSMUST00000075249.5	1	ENSMUSG00000052609	missense	V/A	231	Plekhg3	ENSMUST00000075249.5:c.692T>C	ENSMUSP00000074729.4:p.Val231Ala	H-2-Kb	9	10	2	RALKYHLLL	RVLKYHLLL	NetMHCpan	57.7	70.7	1.225	140	0.271	181.236	223.936	1.236	125.58	83.7	70.7	57.7	322.9311952	287.1507798	322.2923521	278.7725451	SSC_p20	0.971428571	0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.269	140	0	0	NA	12qC3	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr12	59016937	59016937	AT	A	ENSMUST00000021379.7	1	ENSMUSG00000060121	FS	H/X	98	Gemin2	ENSMUST00000021379.7:c.298del	ENSMUSP00000021379.6:p.Ser100GlnfsTer73	H-2-Kb	9	53	0	KGYVLKGPL	NA	NetMHC	86.61	NA	NA	155	0.2	256.845	NA	NA	NA	86.61	NA	129	NA	384.6892055	NA	400.1750427	SSC_p20	0.657142857	0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.204	155	0	0	NA	12qC1	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr12	59016937	59016937	AT	A	ENSMUST00000021379.7	1	ENSMUSG00000060121	FS	H/X	98	Gemin2	ENSMUST00000021379.7:c.298del	ENSMUSP00000021379.6:p.Ser100GlnfsTer73	H-2-Kb	9	71	0	SIMYKLVFL	NA	NetMHC	165.77	NA	NA	155	0.2	231.074	NA	NA	NA	165.77	NA	213.2	NA	248.9487787	NA	267.4545558	SSC_p20	1.614285714	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.204	155	0	0	NA	12qC1	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr12	51999859	51999859	T	G	ENSMUST00000021339.7	1	ENSMUSG00000020956	missense	N/H	66	Dtd2	ENSMUST00000021339.7:c.196A>C	ENSMUSP00000021339.7:p.Asn66His	H-2-Kb	9	6	6	VNTLLHVKL	VNTLLNVKL	NetMHCpan	212.6	1257.5	5.915	110	0.191	402.088	1117.492	2.779	1647.25	460.42	1257.5	212.6	977.4847712	462.4981501	708.3534281	343.7557727	SSC_p20	1.114285714	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe	3	0.196	110	0	0	NA	12qC1	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr12	110666605	110666605	A	G	ENSMUST00000018851.13	1	ENSMUSG00000018707	missense	I/V	4617	Dync1h1	ENSMUST00000018851.13:c.13849A>G	ENSMUSP00000018851.7:p.Ile4617Val	H-2-Kb	9	3	9	LNFTRADLV	LNFTRADLI	SMMPMBEC	470.165	485.568	1.033	122	0.156	498.16	522.734	1.049	648.78	574.37	443.7	489.2	559.8993973	507.1191374	485.5679351	470.1646793	SSC_p20	0.557142857	0.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.172	122	0	0	NA	12qF1	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr13	64794243	64794243	T	C	ENSMUST00000091554.5	5	ENSMUSG00000033063	missense	I/M	224	Cntnap3	ENSMUST00000091554.5:c.672A>G	ENSMUSP00000089140.4:p.Ile224Met	H-2-Db	9	3	9	KAMQNSGIM	KAMQNSGII	NetMHC	26.19	22.66	0.865	88	0.318	85.851	80.049	0.932	22.66	26.19	28.1	26.3	158.3507045	155.1029293	131.9988052	145.4018727	SSC_p20	0.014285714	0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.312	88	0	0	NA	13qB3	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr14	55898376	55898376	C	G	ENSMUST00000111325.4	1	ENSMUSG00000022223	missense	Q/H	113	Sdr39u1	ENSMUST00000111325.4:c.339G>C	ENSMUSP00000106957.3:p.Gln113His	H-2-Kb	8	7	5	VAYYHPSL	VAYYQPSL	NetMHC	5.41	20.15	3.725	101	0.059	10.857	37.221	3.428	20.15	5.41	15.2	6.2	54.29252	15.51457917	87.8496428	20.45219854	SSC_p20	-0.371428571	-0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.071	101	0	0	NA	14qC3	chr14-54464254-56382941	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.418671732	sgMsh2	cell line
chr14	12211681	12211681	G	T	ENSMUST00000022264.12	1	ENSMUSG00000021745	missense	V/F	988	Ptprg	ENSMUST00000022264.12:c.2962G>T	ENSMUSP00000022264.6:p.Val988Phe	H-2-Kb	8	7	5	ACYTFRRL	ACYTVRRL	NetMHC	9.12	615.69	67.51	82	0.244	16.84	448.033	26.605	615.69	9.12	704.4	19.4	280.3754606	20.35822922	213.6682534	14.28038776	SSC_p20	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.247	82	0	0	NA	14qA1	chr14-7548571-41174827	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr14	50361523	50361523	T	G	ENSMUST00000185091.1	2	ENSMUSG00000051969	missense	L/R	322	Tlr11	ENSMUST00000185091.1:c.965T>G	ENSMUSP00000138814.1:p.Leu322Arg	H-2-Kb	8	6	6	KALEFRSL	KALEFLSL	NetMHC	19.44	41.53	2.136	208	0.298	44.749	61.57	1.376	41.53	19.44	28.8	28.3	81.60936526	61.19839043	97.21650414	72.06759014	SSC_p20	0.485714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.293	208	0	0	NA	14qC1	chr14-44852972-51146171	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr13	110399390	110399390	T	C	ENSMUST00000022212.8	1	ENSMUSG00000021701	missense	Y/H	543	Plk2	ENSMUST00000022212.8:c.1627T>C	ENSMUSP00000022212.7:p.Tyr543His	H-2-Kb	8	8	4	TVHHYAEL	TVHYYAEL	NetMHC	32.47	16.81	0.518	182	0.352	51.941	46.173	0.889	16.81	32.47	18.6	34.1	95.22259222	94.56708451	73.74625996	69.78145169	SSC_p20	-0.2	-0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.351	182	0	0	NA	13qD2.1	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr14	52036009	52036009	A	G	ENSMUST00000214071.1	5	ENSMUSG00000044286	missense	M/T	34	Olfr221	ENSMUST00000214071.1:c.101T>C	ENSMUSP00000150675.1:p.Met34Thr	H-2-Kb	8	10	2	VTYAITVL	VMYAITVL	NetMHCpan	26.2	23.8	0.908	72	0.222	60.149	92.464	1.537	54.39	47.73	23.8	26.2	137.3219621	75.63799359	130.5389154	72.56713881	SSC_p20	1.657142857	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.239	72	0	0	NA	14qC2	chr14-51886599-53079320	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr14	16423715	16423715	CA	C	ENSMUST00000017629.11	1	ENSMUSG00000017485	FS	K/X	1426	Top2b	ENSMUST00000017629.11:c.4282del	ENSMUSP00000017629.4:p.Ser1428ValfsTer41	H-2-Kb	8	18	0	IFFHFLHI	NA	SMMPMBEC	20.311	NA	NA	52	0.154	23.503	NA	NA	NA	60.11	NA	23.9	NA	23.10681036	NA	20.3114066	SSC_p20	1.471428571	1.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1538	52	0	0	NA	14qA2	chr14-7548571-41174827	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.906925527	sgMsh2	cell line
chr13	24069691	24069691	C	T	ENSMUST00000072889.11	1	ENSMUSG00000021338	missense	R/H	819	Carmil1	ENSMUST00000072889.11:c.2456G>A	ENSMUSP00000072662.5:p.Arg819His	H-2-Kb	8	7	5	ISIPHTFV	ISIPRTFV	NetMHCpan	135	551.6	4.086	98	0.306	143.522	942.936	6.57	1291.3	147.17	551.6	135	911.4650073	139.8749679	974.4061133	185.6692572	SSC_p20	0.742857143	0.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.293	98	0	0	NA	13qA3.1	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr13	54221267	54221267	TC	T	ENSMUST00000038101.3	1	ENSMUSG00000034987	FS	S/X	374	Hrh2	ENSMUST00000038101.3:c.1122del	ENSMUSP00000038170.3:p.Phe375SerfsTer53	H-2-Kb	8	26	0	SNHHYISV	NA	NetMHCpan	84.2	NA	NA	40	0.375	192.438	NA	NA	NA	148.97	NA	84.2	NA	235.9065504	NA	249.310173	SSC_p20	-0.471428571	-0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.4	40	0	0	NA	13qB1	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr14	50361509	50361509	A	T	ENSMUST00000185091.1	2	ENSMUSG00000051969	missense	K/N	317	Tlr11	ENSMUST00000185091.1:c.951A>T	ENSMUSP00000138814.1:p.Lys317Asn	H-2-Kb	8	11	1	NALEFLSL	KALEFLSL	NetMHCpan	121.9	28.8	0.236	197	0.289	263.215	61.57	0.234	41.53	292.76	28.8	121.9	81.60936526	244.7597495	97.21650414	281.6696149	SSC_p20	1.671428571	1.671428571	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.295	197	0	0	NA	14qC1	chr14-44852972-51146171	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr14	13493535	13493535	T	C	ENSMUST00000070323.11	1	ENSMUSG00000056296	missense	C/R	38	Synpr	ENSMUST00000070323.11:c.112T>C	ENSMUSP00000064986.5:p.Cys38Arg	H-2-Kb	8	4	8	AMFAFATR	AMFAFATC	SMM	122.107	89.072	0.729	103	0.223	244.649	89.041	0.364	89.01	316.42	75.5	846.6	89.07175307	122.1068422	99.9401507	172.8781076	SSC_p20	0.842857143	1.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.219	103	0	0	NA	14qA1	chr14-7548571-41174827	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr14	16423715	16423715	CA	C	ENSMUST00000017629.11	1	ENSMUSG00000017485	FS	K/X	1426	Top2b	ENSMUST00000017629.11:c.4282del	ENSMUSP00000017629.4:p.Ser1428ValfsTer41	H-2-Kb	8	44	0	LLFLLHHL	NA	NetMHCpan	100	NA	NA	52	0.154	245.822	NA	NA	NA	510.6	NA	100	NA	284.2758718	NA	207.3671696	SSC_p20	1.657142857	1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1538	52	0	0	NA	14qA2	chr14-7548571-41174827	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.906925527	sgMsh2	cell line
chr14	23436016	23436016	TA	T	ENSMUST00000188285.6	1	ENSMUSG00000063142	FS	Y/X	680	Kcnma1	ENSMUST00000188285.6:c.2038del	ENSMUSP00000140275.1:p.Tyr680ThrfsTer31	H-2-Kb	8	8	4	AFFTARPV	NA	SMM	285.588	NA	NA	125	0.16	464.476	NA	NA	NA	585.6	NA	996.8	NA	285.5880296	NA	343.3523309	SSC_p20	0.685714286	0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.16	125	0	0	NA	14qA3	chr14-7548571-41174827	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.943485594	sgMsh2	cell line
chr13	23482748	23482748	T	A	ENSMUST00000110433.9	1	ENSMUSG00000053216	missense	Q/L	229	Btn2a2	ENSMUST00000110433.9:c.686A>T	ENSMUSP00000106063.3:p.Gln229Leu	H-2-Kb	8	4	8	VNNTLLSL	VNNTLLSQ	SMM	292.914	11796.142	40.272	71	0.282	426.356	16762.841	39.317	21729.54	834.12	25042.5	477.1	11796.14222	292.9139126	6756.783445	375.6124682	SSC_p20	0.414285714	0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.294	71	0	0	NA	13qA3.1	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr13	110399390	110399390	T	C	ENSMUST00000022212.8	1	ENSMUSG00000021701	missense	Y/H	543	Plk2	ENSMUST00000022212.8:c.1627T>C	ENSMUSP00000022212.7:p.Tyr543His	H-2-Kb	9	7	5	KTVHHYAEL	KTVHYYAEL	NetMHC	30.54	13.36	0.437	182	0.352	82.903	57.756	0.697	13.36	30.54	13.2	37.5	116.9795644	145.9183802	102.1527353	128.3068964	SSC_p20	-0.2	-0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.351	182	0	0	NA	13qD2.1	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr13	100061007	100061007	T	A	ENSMUST00000038104.11	5	ENSMUSG00000049658	missense	I/F	957	Bdp1	ENSMUST00000038104.11:c.2869A>T	ENSMUSP00000038321.5:p.Ile957Phe	H-2-Kb	9	7	5	TTGEFCTNL	TTGEICTNL	NetMHC	96.64	2956.27	30.591	143	0.329	266.273	2897.591	10.882	2956.27	96.64	2950	149.5	2845.181656	458.2579416	2047.623004	383.0451784	SSC_p20	0.142857143	0.142857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.331	143	0	0	NA	13qD1	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr13	67542395	67542395	TA	T	ENSMUST00000181892.8	1	ENSMUSG00000095432	FS	Y/X	249	Zfp748	ENSMUST00000181892.8:c.745del	ENSMUSP00000137928.1:p.Tyr249ThrfsTer47	H-2-Kb	9	44	0	VAMPFVHSI	NA	NetMHCpan	32.9	NA	NA	129	0.31	254.832	NA	NA	NA	98.41	NA	32.9	NA	411.2538721	NA	441.8247089	SSC_p20	1.114285714	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.304	129	0	0	NA	13qB3	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr13	95707884	95707884	T	G	ENSMUST00000068603.7	1	ENSMUSG00000021676	missense	K/N	505	Iqgap2	ENSMUST00000068603.7:c.1515A>C	ENSMUSP00000067685.6:p.Lys505Asn	H-2-Kb	9	4	8	LFYTKSQNL	LFYTKSQKL	NetMHC	102.71	231.77	2.257	156	0.308	163.174	227.849	1.396	231.77	102.71	423.3	178.4	223.9288243	147.9483071	214.4124503	180.8214719	SSC_p20	-1.414285714	-0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe	3	0.322	156	0	0	NA	13qD1	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr14	16423715	16423715	CA	C	ENSMUST00000017629.11	1	ENSMUSG00000017485	FS	K/X	1426	Top2b	ENSMUST00000017629.11:c.4282del	ENSMUSP00000017629.4:p.Ser1428ValfsTer41	H-2-Kb	9	18	0	IFFHFLHIL	NA	NetMHCpan	37	NA	NA	52	0.154	73.405	NA	NA	NA	112.16	NA	37	NA	65.48020042	NA	81.32985537	SSC_p20	1.614285714	1.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1538	52	0	0	NA	14qA2	chr14-7548571-41174827	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.906925527	sgMsh2	cell line
chr14	20729830	20729830	C	A	ENSMUST00000223679.1	NA	ENSMUSG00000039308	missense	S/I	114	Ndst2	ENSMUST00000223679.1:c.341G>T	ENSMUSP00000153036.1:p.Ser114Ile	H-2-Kb	9	6	6	SRFRYITEL	SRFRYSTEL	NetMHCpan	100.6	138.2	1.374	177	0.249	199.505	181.841	0.911	92.82	119.04	138.2	100.6	225.4810248	279.9690348	309.920283	299.3987618	SSC_p20	0.157142857	0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.253	177	0	0	NA	14qA3	chr14-7548571-41174827	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr13	54221267	54221267	TC	T	ENSMUST00000038101.3	1	ENSMUSG00000034987	FS	S/X	374	Hrh2	ENSMUST00000038101.3:c.1122del	ENSMUSP00000038170.3:p.Phe375SerfsTer53	H-2-Kb	9	26	0	SNHHYISVL	NA	NetMHCpan	68.7	NA	NA	40	0.375	178.271	NA	NA	NA	141.14	NA	68.7	NA	229.67303	NA	215.4021332	SSC_p20	0.571428571	0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.4	40	0	0	NA	13qB1	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr13	84294754	84294754	TA	T	ENSMUST00000057495.9	1	ENSMUSG00000035762	FS	L/X	446	Tmem161b	ENSMUST00000057495.9:c.1343del	ENSMUSP00000055208.7:p.Asn448ThrfsTer15	H-2-Kb	9	9	5	SSLKTSSRL	NA	NetMHC	149.93	NA	NA	91	0.319	357.985	NA	NA	NA	149.93	NA	436	NA	279.9690348	NA	463.713778	SSC_p20	-0.442857143	-0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.314	91	0	0	NA	13qC3	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr13	95707886	95707886	T	G	ENSMUST00000068603.7	1	ENSMUSG00000021676	missense	K/Q	505	Iqgap2	ENSMUST00000068603.7:c.1513A>C	ENSMUSP00000067685.6:p.Lys505Gln	H-2-Kb	9	4	8	LFYTKSQQL	LFYTKSQKL	SMMPMBEC	150.401	214.412	1.426	156	0.308	157.428	227.849	1.447	231.77	154.86	423.3	361.4	223.9288243	159.9963223	214.4124503	150.4007493	SSC_p20	-1.414285714	-0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe	3	0.322	156	0	0	NA	13qD1	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr14	56761852	56761852	A	C	ENSMUST00000022507.12	1	ENSMUSG00000021938	missense	L/V	316	Pspc1	ENSMUST00000022507.12:c.946T>G	ENSMUSP00000022507.5:p.Leu316Val	H-2-Kb	9	11	1	VMLMRQDLM	LMLMRQDLM	SMM	117.249	337.373	2.877	132	0.136	170.678	505.031	2.959	672.69	215.68	1505.6	463.1	337.3727491	117.2492302	325.2744865	125.6753201	SSC_p20	-0.014285714	0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.143	132	0	0	NA	14qC3	chr14-56383782-69029817	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.843240249	sgMsh2	cell line
chr14	55898376	55898376	C	G	ENSMUST00000111325.4	1	ENSMUSG00000022223	missense	Q/H	113	Sdr39u1	ENSMUST00000111325.4:c.339G>C	ENSMUSP00000106957.3:p.Gln113His	H-2-Kb	9	7	5	VAYYHPSLT	VAYYQPSLT	SMM	102.828	299.992	2.917	101	0.059	179.608	684.076	3.809	945.24	230.91	1786.7	348.2	299.9922256	102.8276712	422.9119919	128.3068964	SSC_p20	-0.728571429	-0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.071	101	0	0	NA	14qC3	chr14-54464254-56382941	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.418671732	sgMsh2	cell line
chr14	21847322	21847322	T	C	ENSMUST00000124549.8	1	ENSMUSG00000021773	missense	S/G	248	Comtd1	ENSMUST00000124549.8:c.742A>G	ENSMUSP00000119330.1:p.Ser248Gly	H-2-Kb	9	7	5	RVYIGLLPL	RVYISLLPL	NetMHCpan	149.5	84.5	0.565	73	0.342	287.931	150.288	0.522	113.03	289.28	84.5	149.5	187.5469475	293.1635689	214.4124503	286.5827198	SSC_p20	1.8	1.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.324	73	0	0	NA	14qA3	chr14-7548571-41174827	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr14	16423715	16423715	CA	C	ENSMUST00000017629.11	1	ENSMUSG00000017485	FS	K/X	1426	Top2b	ENSMUST00000017629.11:c.4282del	ENSMUSP00000017629.4:p.Ser1428ValfsTer41	H-2-Kb	9	37	0	TVMKKIPLL	NA	NetMHCpan	237	NA	NA	52	0.154	309.636	NA	NA	NA	303.59	NA	237	NA	328.178405	NA	315.6821313	SSC_p20	0.657142857	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1538	52	0	0	NA	14qA2	chr14-7548571-41174827	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.906925527	sgMsh2	cell line
chr14	52036009	52036009	A	G	ENSMUST00000214071.1	5	ENSMUSG00000044286	missense	M/T	34	Olfr221	ENSMUST00000214071.1:c.101T>C	ENSMUSP00000150675.1:p.Met34Thr	H-2-Kb	9	6	6	VVFLVTYAI	VVFLVMYAI	NetMHC	404.46	257.9	0.638	72	0.222	474.826	410.59	0.865	257.9	404.46	656.7	462	397.2921646	487.6519891	423.8869047	600.1364431	SSC_p20	2.157142857	2.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.239	72	0	0	NA	14qC2	chr14-51886599-53079320	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr13	63033045	63033045	T	C	ENSMUST00000091560.10	1	ENSMUSG00000021458	missense	S/P	274	Aopep	ENSMUST00000091560.10:c.820T>C	ENSMUSP00000089148.4:p.Ser274Pro	H-2-Kb	9	5	7	CVYTMGPPI	CVYTMGSPI	NetMHCpan	343.4	246.8	0.719	91	0.407	424.354	333.906	0.787	312.09	444.96	246.8	343.4	355.7214058	403.747643	486.6872848	541.0656958	SSC_p20	0.114285714	0.657142857	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.381	91	0	0	NA	13qB3	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr13	84294754	84294754	TA	T	ENSMUST00000057495.9	1	ENSMUSG00000035762	FS	L/X	446	Tmem161b	ENSMUST00000057495.9:c.1343del	ENSMUSP00000055208.7:p.Asn448ThrfsTer15	H-2-Kb	9	18	0	SFFEDFCHF	NA	SMM	375.068	NA	NA	91	0.319	433.889	NA	NA	NA	507.12	NA	463.9	NA	375.0679891	NA	403.8778168	SSC_p20	0.1	0.442857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.314	91	0	0	NA	13qC3	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr14	16423715	16423715	CA	C	ENSMUST00000017629.11	1	ENSMUSG00000017485	FS	K/X	1426	Top2b	ENSMUST00000017629.11:c.4282del	ENSMUSP00000017629.4:p.Ser1428ValfsTer41	H-2-Kb	9	17	0	EIFFHFLHI	NA	NetMHCpan	110.4	NA	NA	52	0.154	230.886	NA	NA	NA	520.73	NA	110.4	NA	258.8868552	NA	202.8850284	SSC_p20	1.471428571	1.471428571	TRUE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1538	52	0	0	NA	14qA2	chr14-7548571-41174827	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.906925527	sgMsh2	cell line
chr14	55769194	55769194	T	C	ENSMUST00000170223.8	1	ENSMUSG00000022220	missense	T/A	1061	Adcy4	ENSMUST00000170223.8:c.3181A>G	ENSMUSP00000130530.1:p.Thr1061Ala	H-2-Kb	9	10	2	CAYFLNTDL	CTYFLNTDL	NetMHCpan	437.6	426.9	0.976	93	0.258	446.369	595.703	1.335	661.33	522.88	426.9	437.6	619.5979897	449.8937915	571.8077009	442.8432201	SSC_p20	0.2	0.771428571	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.245	93	0	0	NA	14qC3	chr14-54464254-56382941	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr13	77761927	77761927	G	A	ENSMUST00000163257.8	5	ENSMUSG00000064138	missense	A/T	100	Fam172a	ENSMUST00000163257.8:c.298G>A	ENSMUSP00000133140.1:p.Ala100Thr	H-2-Kb	9	4	8	WNQKRYETL	WNQKRYEAL	SMMPMBEC	335.931	312.069	0.929	39	0.641	475.504	401.646	0.845	401.4	524.32	1301	1165.9	401.8925911	426.6875784	312.0685478	335.930936	SSC_p20	-1.942857143	-1.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.624	39	0	0	NA	13qC1	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	3	1	sgMsh2	cell line
chr13	34919785	34919785	T	C	ENSMUST00000223834.1	NA	ENSMUSG00000021414	missense	K/R	27	Fam217a	ENSMUST00000223834.1:c.80A>G	ENSMUSP00000153297.1:p.Lys27Arg	H-2-Kb	9	7	5	CAFDRASWL	CAFDKASWL	SMM	175.837	263.093	1.496	87	0.253	349.958	602.637	1.722	928.38	697.73	774.5	425.6	263.0934282	175.8368925	430.7745129	274.3152803	SSC_p20	-0.185714286	0.014285714	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.27	87	0	0	NA	13qA3.3	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr14	55898376	55898376	C	G	ENSMUST00000111325.4	1	ENSMUSG00000022223	missense	Q/H	113	Sdr39u1	ENSMUST00000111325.4:c.339G>C	ENSMUSP00000106957.3:p.Gln113His	H-2-Kb	9	6	6	GVAYYHPSL	GVAYYQPSL	NetMHCpan	357.3	1214.9	3.4	101	0.059	480.627	1043.183	2.17	1660.44	703.02	1214.9	357.3	722.9528931	468.9321403	871.4651012	492.3228579	SSC_p20	-0.371428571	-0.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.071	101	0	0	NA	14qC3	chr14-54464254-56382941	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.418671732	sgMsh2	cell line
chr15	38022377	38022377	A	G	ENSMUST00000226414.1	NA	ENSMUSG00000037487	missense	S/P	628	Ubr5	ENSMUST00000226414.1:c.1882T>C	ENSMUSP00000154293.1:p.Ser628Pro	H-2-Db	9	4	8	SSIASSAPM	SSIASSASM	NetMHC	50.68	369.5	7.291	184	0.141	92.853	414.677	4.466	369.5	50.68	341.8	56.4	459.8540333	129.3063938	512.3538453	136.3232716	SSC_p20	0.971428571	0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.146	184	0	0	NA	15qB3.1	chr15-3279130-72007454	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	0.860930604	sgMsh2	cell line
chr14	118043133	118043133	A	G	ENSMUST00000022725.3	1	ENSMUSG00000022129	missense	V/A	157	Dct	ENSMUST00000022725.3:c.470T>C	ENSMUSP00000022725.2:p.Val157Ala	H-2-Db	9	10	2	YAITTQHWL	YVITTQHWL	NetMHC	62.94	1533.59	24.366	75	0.227	333.838	2644.338	7.921	1533.59	62.94	1321	80.7	3755.08697	586.9755345	3780.680698	592.3385529	SSC_p20	-0.1	-0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.228	75	0	0	NA	14qE4	chr14-70668370-123291781	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr15	47881537	47881537	A	G	ENSMUST00000100670.9	5	ENSMUSG00000022311	missense	L/P	1458	Csmd3	ENSMUST00000100670.9:c.4373T>C	ENSMUSP00000098235.3:p.Leu1458Pro	H-2-Kb	8	6	6	VSLQFPAF	VSLQFLAF	NetMHC	17.81	31.51	1.769	93	0.183	50.364	58.934	1.17	31.51	17.81	60.6	48.4	60.35871704	53.42444264	57.50955406	52.32870654	SSC_p20	0.757142857	0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.191	93	0	0	NA	15qB3.3	chr15-3279130-72007454	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr15	47704155	47704155	T	A	ENSMUST00000100670.9	5	ENSMUSG00000022311	missense	D/V	2204	Csmd3	ENSMUST00000100670.9:c.6611A>T	ENSMUSP00000098235.3:p.Asp2204Val	H-2-Kb	8	4	8	TSLYFHSV	TSLYFHSD	NetMHCpan	23.6	6723.8	284.907	209	0.191	48.966	3329.941	68.005	6179.33	26.03	6723.8	23.6	480.5515695	71.90183929	409.0157201	71.90183929	SSC_p20	0.671428571	0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.194	209	0	0	NA	15qB3.3	chr15-3279130-72007454	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr14	119139009	119139009	T	C	ENSMUST00000065904.4	1	ENSMUSG00000053465	missense	F/L	199	Hs6st3	ENSMUST00000065904.4:c.595T>C	ENSMUSP00000070394.3:p.Phe199Leu	H-2-Kb	8	4	8	ETWLFSRL	ETWLFSRF	SMMPMBEC	35.624	447.445	12.56	59	0.22	41.155	751.555	18.262	863.91	37.61	639.2	44.7	901.0315536	55.42937734	447.4453509	35.62377999	SSC_p20	0.5	0.5	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.21	59	0	0	NA	14qE4	chr14-70668370-123291781	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr14	110750452	110750452	C	A	ENSMUST00000078386.3	1	ENSMUSG00000045871	missense	V/F	608	Slitrk6	ENSMUST00000078386.3:c.1822G>T	ENSMUSP00000077492.2:p.Val608Phe	H-2-Kb	8	9	3	LSFLILGL	LSVLILGL	NetMHCpan	51.6	680.5	13.188	143	0.21	120.09	1481.953	12.34	1838.46	106.6	680.5	51.6	1797.794304	193.9724271	1166.11129	133.5795574	SSC_p20	2.5	2.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.216	143	0	0	NA	14qE3	chr14-70668370-123291781	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr14	65975611	65975611	T	G	ENSMUST00000022616.13	1	ENSMUSG00000022037	missense	F/V	149	Clu	ENSMUST00000022616.13:c.445T>G	ENSMUSP00000022616.6:p.Phe149Val	H-2-Kb	8	8	4	SSPVYFWM	SSPFYFWM	NetMHCpan	60.6	40.4	0.667	202	0.243	147.752	201.93	1.367	223.25	116.55	40.4	60.6	180.6092545	178.9534189	234.2825811	206.8902384	SSC_p20	0.614285714	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.261	202	0	0	NA	14qD1	chr14-56383782-69029817	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr15	34839711	34839711	A	G	ENSMUST00000072868.4	1	ENSMUSG00000050963	missense	T/A	407	Kcns2	ENSMUST00000072868.4:c.1219A>G	ENSMUSP00000072645.3:p.Thr407Ala	H-2-Kb	8	10	2	IALIFNKF	ITLIFNKF	NetMHC	147.86	159.21	1.077	166	0.187	272.143	197.83	0.727	159.21	147.86	149.6	170.4	299.0473787	462.1042896	236.4503711	373.8866857	SSC_p20	1.185714286	1.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.194	166	0	0	NA	15qB3.1	chr15-3279130-72007454	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr14	123515710	123515710	C	A	ENSMUST00000000201.6	5	ENSMUSG00000000197	missense	R/I	288	Nalcn	ENSMUST00000000201.6:c.863G>T	ENSMUSP00000000201.5:p.Arg288Ile	H-2-Kb	8	6	6	VFLMYIAI	VFLMYRAI	SMM	80.675	70.265	0.871	96	0.281	117.27	70.672	0.603	62.95	152.93	94.9	239.3	70.26515361	80.67519058	71.07878574	81.60936526	SSC_p20	2.571428571	2.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.308	96	0	0	NA	14qE5	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr15	4759828	4759828	A	G	ENSMUST00000162585.7	1	ENSMUSG00000022181	missense	T/A	252	C6	ENSMUST00000162585.7:c.754A>G	ENSMUSP00000124417.1:p.Thr252Ala	H-2-Kb	8	10	2	KAEFYKNL	KTEFYKNL	NetMHCpan	83	74.2	0.894	93	0.409	190.225	156.053	0.82	169.63	155.16	74.2	83	189.1211064	292.2402293	142.4754378	225.2890066	SSC_p20	-0.542857143	-0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.429	93	0	0	NA	15qA1	chr15-3279130-72007454	6	4	2	0.9	5.307106465	RARE KARYOTYPE	3	1	sgMsh2	cell line
chr15	3325898	3325898	C	A	ENSMUST00000069451.10	1	ENSMUSG00000055737	missense	R/M	301	Ghr	ENSMUST00000069451.10:c.902G>T	ENSMUSP00000069457.4:p.Arg301Met	H-2-Kb	8	4	8	VIFSKQQM	VIFSKQQR	NetMHCpan	188.2	12750.8	67.751	129	0.302	363.498	6741.575	18.546	9458.39	228.41	12750.8	188.2	2790.872523	500.8872766	4024.76011	498.5859086	SSC_p20	-0.357142857	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.309	129	0	0	NA	15qA1	chr15-3279130-72007454	6	4	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr15	23474231	23474231	T	C	ENSMUST00000164787.7	5	ENSMUSG00000040420	missense	V/A	729	Cdh18	ENSMUST00000164787.7:c.2186T>C	ENSMUSP00000130851.1:p.Val729Ala	H-2-Kb	8	10	2	SAPPYDSL	SVPPYDSL	NetMHC	248.33	293.76	1.183	115	0.139	300.788	311.48	1.036	293.76	248.33	329.2	321.2	284.9311953	280.3754606	429.2793522	464.2372661	SSC_p20	-0.457142857	-0.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.154	115	0	0	NA	15qA2	chr15-3279130-72007454	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	0.908104884	sgMsh2	cell line
chr15	65857540	65857540	A	C	ENSMUST00000015146.15	1	ENSMUSG00000015002	missense	S/R	670	Efr3a	ENSMUST00000015146.15:c.2008A>C	ENSMUSP00000015146.9:p.Ser670Arg	H-2-Kb	8	11	1	RGYSVERL	SGYSVERL	SMM	216.641	102.74	0.474	127	0.213	252.168	110.215	0.437	79.46	271.13	141	423.4	102.7401038	216.6406749	117.6901185	233.2061504	SSC_p20	-0.357142857	-0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.203	127	0	0	NA	15qD1	chr15-3279130-72007454	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr15	60917930	60917930	A	G	ENSMUST00000096418.4	1	ENSMUSG00000022347	missense	Y/H	490	A1bg	ENSMUST00000096418.4:c.1468T>C	ENSMUSP00000094151.3:p.Tyr490His	H-2-Kb	8	7	5	YSCRHTAL	YSCRYTAL	SMM	116.343	30.043	0.258	85	0.141	198.555	28.753	0.145	20.01	278.33	51.5	481.2	30.04277187	116.3429308	27.46249558	118.7790917	SSC_p20	-0.157142857	-0.157142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.156	85	0	0	NA	15qD1	chr15-3279130-72007454	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	0.919898454	sgMsh2	cell line
chr15	76185668	76185668	G	A	ENSMUST00000073418.12	5	ENSMUSG00000022565	missense	R/W	1153	Plec	ENSMUST00000073418.12:c.3457C>T	ENSMUSP00000073124.6:p.Arg1153Trp	H-2-Kb	8	7	5	VHRLWLPL	VHRLRLPL	SMM	145.794	747.722	5.129	54	0.241	184.366	805.542	4.369	756.53	292.75	951.2	214.3	747.7217263	145.794117	854.5549615	154.4329616	SSC_p20	0.171428571	0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe	3	0.25	54	0	0	NA	15qD3	chr15-72009072-90409701	7	4	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr14	110750452	110750452	C	A	ENSMUST00000078386.3	1	ENSMUSG00000045871	missense	V/F	608	Slitrk6	ENSMUST00000078386.3:c.1822G>T	ENSMUSP00000077492.2:p.Val608Phe	H-2-Kb	8	10	2	SFLILGLL	SVLILGLL	SMM	323.4	361.194	1.117	143	0.21	437.633	328.097	0.75	295	460.56	242.7	496.3	361.1935614	323.3999884	379.0879676	414.7056956	SSC_p20	3.157142857	3.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.216	143	0	0	NA	14qE3	chr14-70668370-123291781	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr14	110750452	110750452	C	A	ENSMUST00000078386.3	1	ENSMUSG00000045871	missense	V/F	608	Slitrk6	ENSMUST00000078386.3:c.1822G>T	ENSMUSP00000077492.2:p.Val608Phe	H-2-Kb	8	7	5	VPLSFLIL	VPLSVLIL	SMM	118.233	1628.321	13.772	143	0.21	335.905	4103.174	12.215	10092.79	784.33	5707.5	504.8	1628.32091	118.2333514	2498.848923	167.0090478	SSC_p20	2.328571429	2.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.216	143	0	0	NA	14qE3	chr14-70668370-123291781	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr15	28346829	28346829	T	C	ENSMUST00000067048.7	5	ENSMUSG00000022262	missense	M/T	2486	Dnah5	ENSMUST00000067048.7:c.7457T>C	ENSMUSP00000069751.6:p.Met2486Thr	H-2-Kb	8	4	8	RLFVFAMT	RLFVFAMM	SMMPMBEC	182.28	37.996	0.208	56	0.25	384.705	30.353	0.079	22.71	798.3	19.8	433.1	47.39581548	336.3101696	37.99618556	182.2804114	SSC_p20	2.371428571	2.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.283	56	0	0	NA	15qB1	chr15-3279130-72007454	6	4	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr15	7247153	7247153	A	G	ENSMUST00000096494.4	1	ENSMUSG00000042961	missense	Y/H	511	Egflam	ENSMUST00000096494.4:c.1531T>C	ENSMUSP00000094238.4:p.Tyr511His	H-2-Kb	9	4	8	ITFRTPLHL	ITFRTPLYL	NetMHCpan	51.9	65	1.252	46	0.391	232.478	263.806	1.135	144.69	97.58	65	51.9	382.9217191	367.3753391	481.1162215	439.7947088	SSC_p20	0.057142857	0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.422	46	0	0	NA	15qA1	chr15-3279130-72007454	6	4	2	0.9	5.307106465	RARE KARYOTYPE	3	1	sgMsh2	cell line
chr15	44546608	44546608	A	G	ENSMUST00000209244.1	5	ENSMUSG00000038725	missense	I/V	2504	Pkhd1l1	ENSMUST00000209244.1:c.7510A>G	ENSMUSP00000147447.1:p.Ile2504Val	H-2-Kb	9	3	9	QSYNRAITV	QSYNRAITI	NetMHC	126.51	181.23	1.433	181	0.199	211.495	223.671	1.058	181.23	126.51	213.4	211.1	233.9429705	211.8897751	287.2433612	278.131386	SSC_p20	0.071428571	0.071428571	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.205	181	0	0	NA	15qB3.2	chr15-3279130-72007454	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr15	3325898	3325898	C	A	ENSMUST00000069451.10	1	ENSMUSG00000055737	missense	R/M	301	Ghr	ENSMUST00000069451.10:c.902G>T	ENSMUSP00000069457.4:p.Arg301Met	H-2-Kb	9	4	8	VIFSKQQMI	VIFSKQQRI	NetMHC	128.02	112.77	0.881	129	0.302	167.824	129.667	0.773	112.77	128.02	141	229.5	118.334124	147.6080354	149.021867	188.039895	SSC_p20	-0.357142857	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.309	129	0	0	NA	15qA1	chr15-3279130-72007454	6	4	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr15	38022377	38022377	A	G	ENSMUST00000226414.1	NA	ENSMUSG00000037487	missense	S/P	628	Ubr5	ENSMUST00000226414.1:c.1882T>C	ENSMUSP00000154293.1:p.Ser628Pro	H-2-Kb	9	4	8	SSIASSAPM	SSIASSASM	NetMHC	131.72	468.59	3.557	184	0.141	324.894	631.128	1.943	468.59	131.72	625.3	284.1	636.9568317	365.6874028	798.4541822	466.9280884	SSC_p20	0.971428571	0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.146	184	0	0	NA	15qB3.1	chr15-3279130-72007454	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	0.860930604	sgMsh2	cell line
chr14	110750452	110750452	C	A	ENSMUST00000078386.3	1	ENSMUSG00000045871	missense	V/F	608	Slitrk6	ENSMUST00000078386.3:c.1822G>T	ENSMUSP00000077492.2:p.Val608Phe	H-2-Kb	9	9	3	LSFLILGLL	LSVLILGLL	NetMHC	143.39	1008.91	7.036	143	0.21	175.397	867.6	4.946	1008.91	143.39	1117.4	174.9	726.289892	177.8729877	685.8829388	175.8935847	SSC_p20	3.157142857	3.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.216	143	0	0	NA	14qE3	chr14-70668370-123291781	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr14	123515710	123515710	C	A	ENSMUST00000000201.6	5	ENSMUSG00000000197	missense	R/I	288	Nalcn	ENSMUST00000000201.6:c.863G>T	ENSMUSP00000000201.5:p.Arg288Ile	H-2-Kb	9	5	7	WVFLMYIAI	WVFLMYRAI	SMM	126.506	178.694	1.413	96	0.281	190.437	187.572	0.985	117.77	251.38	308	1796.8	178.6940122	126.5056726	196.4490803	129.4941055	SSC_p20	2.571428571	2.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.308	96	0	0	NA	14qE5	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr15	76185668	76185668	G	A	ENSMUST00000073418.12	5	ENSMUSG00000022565	missense	R/W	1153	Plec	ENSMUST00000073418.12:c.3457C>T	ENSMUSP00000073124.6:p.Arg1153Trp	H-2-Kb	9	6	6	TVHRLWLPL	TVHRLRLPL	NetMHCpan	140.4	473.4	3.372	54	0.241	302.662	666.334	2.202	585.79	318.08	473.4	140.4	790.8789199	332.7438214	746.8785726	287.2433612	SSC_p20	0.171428571	0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe	3	0.25	54	0	0	NA	15qD3	chr15-72009072-90409701	7	4	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr15	4759828	4759828	A	G	ENSMUST00000162585.7	1	ENSMUSG00000022181	missense	T/A	252	C6	ENSMUST00000162585.7:c.754A>G	ENSMUSP00000124417.1:p.Thr252Ala	H-2-Kb	9	9	3	LKAEFYKNL	LKTEFYKNL	NetMHCpan	346.3	741.3	2.141	93	0.409	401.095	672.763	1.677	404.98	353.33	741.3	346.3	653.2960014	448.8590645	692.2293355	521.4948213	SSC_p20	-0.542857143	-0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.429	93	0	0	NA	15qA1	chr15-3279130-72007454	6	4	2	0.9	5.307106465	RARE KARYOTYPE	3	1	sgMsh2	cell line
chr15	3991830	3991830	T	G	ENSMUST00000046633.9	1	ENSMUSG00000041935	missense	K/T	81	AW549877	ENSMUST00000046633.9:c.242A>C	ENSMUSP00000038476.8:p.Lys81Thr	H-2-Kb	9	4	8	MTYFEENTL	MTYFEENKL	SMM	242.722	307.688	1.268	141	0.191	358.362	418.218	1.167	723.29	579.45	513.4	390.7	307.6876041	242.7224795	323.0353127	326.0243217	SSC_p20	-0.842857143	-0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.199	141	0	0	NA	15qA1	chr15-3279130-72007454	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr16	16673096	16673096	T	C	ENSMUST00000206365.2	3	ENSMUSG00000048101	missense	K/R	295	Olfr19	ENSMUST00000206365.2:c.884A>G	ENSMUSP00000145655.2:p.Lys295Arg	H-2-Db	9	6	6	YSLRNRDLM	YSLRNKDLM	NetMHC	3.3	4.46	1.352	131	0.26	5.853	8.806	1.505	4.46	3.3	5.9	4.6	11.71170164	7.105914866	14.27479894	9.496640546	SSC_p20	-0.928571429	-0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.265	131	0	0	NA	16qA3	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr15	103462798	103462798	A	C	ENSMUST00000047405.8	1	ENSMUSG00000022488	missense	N/T	239	Nckap1l	ENSMUST00000047405.8:c.716A>C	ENSMUSP00000035400.7:p.Asn239Thr	H-2-Db	9	10	2	ITPANSDTM	INPANSDTM	NetMHC	24.26	56.17	2.315	133	0.286	123.502	236.034	1.911	56.17	24.26	149.5	57.5	322.5670482	189.5047063	348.7947987	191.6769985	SSC_p20	-0.914285714	-0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.278	133	0	0	NA	15qF3	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr15	96997032	96997032	T	C	ENSMUST00000023101.9	1	ENSMUSG00000022464	missense	I/M	534	Slc38a4	ENSMUST00000023101.9:c.1602A>G	ENSMUSP00000023101.3:p.Ile534Met	H-2-Db	9	7	5	MALIMLDWI	MALIILDWI	NetMHC	61.31	1036.31	16.903	119	0.05	88.964	663.631	7.46	1036.31	61.31	287.6	73.8	715.5170714	150.5289388	611.7443966	104.128593	SSC_p20	2.014285714	2.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.063	119	0	0	NA	15qF1	chr15-90488712-97679427	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	0.371497453	sgMsh2	cell line
chr16	3592590	3592590	A	G	ENSMUST00000216259.1	5	ENSMUSG00000051003	missense	S/G	65	Olfr161	ENSMUST00000216259.1:c.193A>G	ENSMUSP00000150825.1:p.Ser65Gly	H-2-Db	9	8	4	FFLGNLSFV	FFLSNLSFV	SMM	191.699	80.282	0.419	238	0.218	456.264	114.023	0.25	99.94	647.94	502	1445.2	80.28233585	191.6990674	128.1061561	264.5879126	SSC_p20	1.414285714	1.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.222	238	0	0	NA	16qA1	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr15	101643595	101643595	T	A	ENSMUST00000229963.1	NA	ENSMUSG00000095241	missense	Y/F	468	Gm5478	ENSMUST00000229963.1:c.1403A>T	ENSMUSP00000155269.1:p.Tyr468Phe	H-2-Kb	8	7	5	SSHSFASV	SSHSYASV	NetMHC	6.34	8.19	1.292	149	0.188	20.43	27.345	1.339	8.19	6.34	24.3	16.1	32.26561891	26.28693795	30.39065077	24.75939338	SSC_p20	0.457142857	0.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.192	149	0	0	NA	15qF2	chr15-97680059-102454328	7	4	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr15	91272378	91272378	C	T	ENSMUST00000109283.1	1	ENSMUSG00000036298	missense	A/T	564	Slc2a13	ENSMUST00000109283.1:c.1690G>A	ENSMUSP00000104906.1:p.Ala564Thr	H-2-Kb	8	11	1	TFFLYAGF	AFFLYAGF	NetMHC	34.43	36.39	1.057	76	0.237	41.153	52.14	1.267	36.39	34.43	103.8	82	58.17548331	46.10414792	46.10414792	36.20261985	SSC_p20	1.757142857	1.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.24	76	0	0	NA	15qE3	chr15-90488712-97679427	6	4	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr16	59201814	59201814	G	T	ENSMUST00000208244.2	2	ENSMUSG00000052537	missense	A/D	204	Olfr198	ENSMUST00000208244.2:c.611C>A	ENSMUSP00000146813.2:p.Ala204Asp	H-2-Kb	8	5	7	LVLIFSDL	LVLIFSAL	NetMHCpan	42.8	18.4	0.43	222	0.284	82.245	26.971	0.328	11.93	47.07	18.4	42.8	37.56124682	135.4378341	35.54184757	117.4194387	SSC_p20	2.114285714	2.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.286	222	0	0	NA	16qC1.3	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr15	98543573	98543573	AG	A	ENSMUST00000169707.7	1	ENSMUSG00000011960	FS	L/X	605	Ccnt1	ENSMUST00000169707.7:c.1813del	ENSMUSP00000126874.1:p.Leu605PhefsTer4	H-2-Kb	8	4	8	LNFPFPPF	LNFPFPPL	NetMHCpan	33.2	5.1	0.154	164	0.213	98.642	7.355	0.075	4.66	52.16	5.1	33.2	9.610367602	156.221211	11.55420317	145.1242539	SSC_p20	0.014285714	0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2134	164	0	0	NA	15qF1	chr15-97680059-102454328	7	4	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr16	19566134	19566134	T	C	ENSMUST00000215476.1	5	ENSMUSG00000068535	missense	M/V	250	Olfr169	ENSMUST00000215476.1:c.748A>G	ENSMUSP00000150917.1:p.Met250Val	H-2-Kb	8	9	3	VIVYYGPF	VIMYYGPF	NetMHC	58.99	29.11	0.493	375	0.253	130.566	74.698	0.572	29.11	58.99	38.8	91.8	179.3659491	231.6007706	110.5961477	169.3323751	SSC_p20	0.985714286	1.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.255	375	0	0	NA	16qA3	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr16	3592590	3592590	A	G	ENSMUST00000216259.1	5	ENSMUSG00000051003	missense	S/G	65	Olfr161	ENSMUST00000216259.1:c.193A>G	ENSMUSP00000150825.1:p.Ser65Gly	H-2-Kb	8	6	6	MYFFLGNL	MYFFLSNL	NetMHCpan	34	14.7	0.432	238	0.218	89.071	59.088	0.663	49.51	88.66	14.7	34	68.66572344	89.4828896	80.11982647	98.3422182	SSC_p20	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.222	238	0	0	NA	16qA1	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr16	45748812	45748812	T	C	ENSMUST00000076333.11	1	ENSMUSG00000033149	missense	D/G	1228	Phldb2	ENSMUST00000076333.11:c.3683A>G	ENSMUSP00000075672.5:p.Asp1228Gly	H-2-Kb	8	4	8	RTFSYYAG	RTFSYYAD	SMM	81.234	139.232	1.714	100	0.3	177.36	587.547	3.313	1041.76	237.78	1033.6	231.2	139.2323008	81.23440428	141.4946437	123.5207728	SSC_p20	0.014285714	0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.316	100	0	0	NA	16qB5	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr16	3592523	3592523	GA	G	ENSMUST00000216259.1	5	ENSMUSG00000051003	FS	G/X	42	Olfr161	ENSMUST00000216259.1:c.128del	ENSMUSP00000150825.1:p.Asn43ThrfsTer46	H-2-Kb	8	47	0	LSLRYWPF	NA	NetMHCpan	130.4	NA	NA	203	0.232	210.41	NA	NA	NA	465.62	NA	130.4	NA	248.7367755	NA	172.0838049	SSC_p20	-0.357142857	-0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.239	203	0	0	NA	16qA1	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr16	58915901	58915901	GA	G	ENSMUST00000171656.2	2	ENSMUSG00000090629	FS	S/X	247	Olfr180	ENSMUST00000171656.2:c.739del	ENSMUSP00000128358.1:p.Ser247LeufsTer31	H-2-Kb	8	31	0	KTYQWLYF	NA	NetMHCpan	200.7	NA	NA	181	0.271	382.912	NA	NA	NA	489.31	NA	200.7	NA	445.3895263	NA	320.4350395	SSC_p20	-0.157142857	-0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.281	181	0	0	NA	16qC1.2	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr15	81949166	81949166	TC	T	ENSMUST00000038757.7	1	ENSMUSG00000042109	FS	I/X	121	Csdc2	ENSMUST00000038757.7:c.369del	ENSMUSP00000044441.7:p.Lys124ArgfsTer72	H-2-Kb	8	63	0	TVLLTQPL	NA	NetMHCpan	392.3	NA	NA	73	0.137	484.312	NA	NA	NA	491.38	NA	392.3	NA	531.7897962	NA	477.2434758	SSC_p20	1.4	1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.152	73	0	0	NA	15qE1	chr15-72009072-90409701	7	4	3	0.9	5.307106465	RARE KARYOTYPE	1	0.896311314	sgMsh2	cell line
chr16	58915901	58915901	GA	G	ENSMUST00000171656.2	2	ENSMUSG00000090629	FS	S/X	247	Olfr180	ENSMUST00000171656.2:c.739del	ENSMUSP00000128358.1:p.Ser247LeufsTer31	H-2-Kb	8	29	0	VIKTYQWL	NA	SMM	154.433	NA	NA	181	0.271	282.366	NA	NA	NA	556.53	NA	386.6	NA	154.4329616	NA	178.1312026	SSC_p20	-0.285714286	-0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.281	181	0	0	NA	16qC1.2	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr16	74352713	74352713	TC	T	ENSMUST00000117785.8	1	ENSMUSG00000052516	FS	D/X	76	Robo2	ENSMUST00000117785.8:c.226del	ENSMUSP00000112776.1:p.Asp76MetfsTer45	H-2-Kb	8	23	0	DLYSFCEL	NA	NetMHCpan	220.3	NA	NA	112	0.196	250.233	NA	NA	NA	561.41	NA	220.3	NA	244.7597495	NA	255.7054591	SSC_p20	1.042857143	1.042857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.2	112	0	0	NA	16qC3.1	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr16	32961669	32961669	A	G	ENSMUST00000135193.8	5	ENSMUSG00000022801	missense	Y/C	271	Lrch3	ENSMUST00000135193.8:c.812A>G	ENSMUSP00000130708.1:p.Tyr271Cys	H-2-Kb	8	5	7	KIHIFKCL	KIHIFKYL	SMMPMBEC	256.886	92.628	0.361	215	0.27	319.381	76.184	0.239	59.74	598.73	59.4	324.9	102.9769442	313.8629122	92.62751223	256.8857419	SSC_p20	1.571428571	1.571428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.251	215	0	0	NA	16qB3	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr16	59345618	59345618	G	T	ENSMUST00000207927.2	5	ENSMUSG00000066257	missense	L/M	28	Olfr206	ENSMUST00000207927.2:c.82C>A	ENSMUSP00000146906.2:p.Leu28Met	H-2-Kb	8	11	1	MVFFLIYV	LVFFLIYV	SMM	180.609	428.292	2.371	253	0.265	411.394	709.776	1.725	991.26	625.21	1711.4	925.4	428.2920371	180.6092545	387.9180607	197.5786438	SSC_p20	3	3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.271	253	0	0	NA	16qC1.3	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr16	7224486	7224486	C	T	ENSMUST00000229741.1	NA	ENSMUSG00000008658	missense	P/L	88	Rbfox1	ENSMUST00000229741.1:c.263C>T	ENSMUSP00000155364.1:p.Pro88Leu	H-2-Kb	8	4	8	HTLNLYPL	HTLNLYPP	SMMPMBEC	366.218	9500.359	25.942	64	0.297	433.519	12596.679	29.057	23581.95	865.57	15693	486.2	9220.192747	380.8377582	9500.358634	366.2182643	SSC_p20	0.614285714	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.308	64	0	0	NA	16qA1	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr15	100209633	100209633	G	A	ENSMUST00000100203.9	1	ENSMUSG00000023026	missense	E/K	1409	Dip2b	ENSMUST00000100203.9:c.4225G>A	ENSMUSP00000097777.3:p.Glu1409Lys	H-2-Kb	8	6	6	TIYDSKTL	TIYDSETL	SMM	364.536	448.477	1.23	93	0.161	441.989	542.053	1.226	1188.74	1110.38	488.8	444.7	448.476819	364.5356443	595.3056439	439.2785529	SSC_p20	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.17	93	0	0	NA	15qF1	chr15-97680059-102454328	7	4	3	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr16	19566134	19566134	T	C	ENSMUST00000215476.1	5	ENSMUSG00000068535	missense	M/V	250	Olfr169	ENSMUST00000215476.1:c.748A>G	ENSMUSP00000150917.1:p.Met250Val	H-2-Kb	9	8	4	VVIVYYGPF	VVIMYYGPF	NetMHC	15.9	15.15	0.953	375	0.253	20.74	22.059	1.064	15.15	15.9	24	30.7	23.8292295	20.23531643	20.28850284	21.24467052	SSC_p20	0.985714286	2.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.255	375	0	0	NA	16qA3	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr15	98543573	98543573	AG	A	ENSMUST00000169707.7	1	ENSMUSG00000011960	FS	L/X	605	Ccnt1	ENSMUST00000169707.7:c.1813del	ENSMUSP00000126874.1:p.Leu605PhefsTer4	H-2-Kb	9	4	8	LNFPFPPFL	LNFPFPPLP	NetMHCpan	20.4	4434.3	217.368	164	0.213	109.169	2677.64	24.527	6146.12	49.64	4434.3	20.4	424.7271271	168.6980257	920.9795777	208.0894201	SSC_p20	1.057142857	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2134	164	0	0	NA	15qF1	chr15-97680059-102454328	7	4	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr16	3592590	3592590	A	G	ENSMUST00000216259.1	5	ENSMUSG00000051003	missense	S/G	65	Olfr161	ENSMUST00000216259.1:c.193A>G	ENSMUSP00000150825.1:p.Ser65Gly	H-2-Kb	9	5	7	PMYFFLGNL	PMYFFLSNL	SMM	22.862	15.35	0.671	238	0.218	43.133	26.875	0.623	34.5	54.11	28.5	71.6	15.35005727	22.86177783	25.24933823	32.15511003	SSC_p20	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.222	238	0	0	NA	16qA1	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr16	13835196	13835196	T	G	ENSMUST00000023362.14	1	ENSMUSG00000022681	missense	L/W	272	Ntan1	ENSMUST00000023362.14:c.815T>G	ENSMUSP00000023362.8:p.Leu272Trp	H-2-Kb	9	9	3	STWMFLKKF	STLMFLKKF	NetMHC	150.06	189.84	1.265	70	0.3	255.117	324.22	1.271	189.84	150.06	238	216.3	451.9704069	352.4601324	410.4403034	293.9341186	SSC_p20	0.371428571	0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.317	70	0	0	NA	16qA1	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr16	45748812	45748812	T	C	ENSMUST00000076333.11	1	ENSMUSG00000033149	missense	D/G	1228	Phldb2	ENSMUST00000076333.11:c.3683A>G	ENSMUSP00000075672.5:p.Asp1228Gly	H-2-Kb	9	4	8	RTFSYYAGK	RTFSYYADK	NetMHC	153.64	747.33	4.864	100	0.3	441.83	813.288	1.841	747.33	153.64	1982	668.2	879.2451877	433.6206938	690.6372522	450.0388435	SSC_p20	-0.442857143	0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.316	100	0	0	NA	16qB5	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr15	91272378	91272378	C	T	ENSMUST00000109283.1	1	ENSMUSG00000036298	missense	A/T	564	Slc2a13	ENSMUST00000109283.1:c.1690G>A	ENSMUSP00000104906.1:p.Ala564Thr	H-2-Kb	9	10	2	GTFFLYAGF	GAFFLYAGF	SMMPMBEC	134.045	103.813	0.774	76	0.237	141.165	112.343	0.796	135.62	163.24	118	135.4	106.6866308	146.9298381	103.8125837	134.0448089	SSC_p20	1.757142857	1.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.24	76	0	0	NA	15qE3	chr15-90488712-97679427	6	4	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr16	74352713	74352713	TC	T	ENSMUST00000117785.8	1	ENSMUSG00000052516	FS	D/X	76	Robo2	ENSMUST00000117785.8:c.226del	ENSMUSP00000112776.1:p.Asp76MetfsTer45	H-2-Kb	9	42	0	VTFVLQGTI	NA	NetMHCpan	117.4	NA	NA	112	0.196	283.035	NA	NA	NA	194.32	NA	117.4	NA	375.9326101	NA	371.7491635	SSC_p20	1.528571429	1.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.2	112	0	0	NA	16qC3.1	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr15	83852059	83852059	T	C	ENSMUST00000109470.7	1	ENSMUSG00000041708	missense	W/R	218	Mpped1	ENSMUST00000109470.7:c.652T>C	ENSMUSP00000105096.1:p.Trp218Arg	H-2-Kb	9	7	5	WFYGRGFNL	WFYGWGFNL	SMMPMBEC	271.175	367.494	1.355	197	0.178	288.061	378.347	1.313	389.2	290.29	470	406.9	353.2726369	285.8314418	367.4937861	271.1752193	SSC_p20	-0.5	-0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.196	197	0	0	NA	15qE1	chr15-72009072-90409701	7	4	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr16	58915901	58915901	GA	G	ENSMUST00000171656.2	2	ENSMUSG00000090629	FS	S/X	247	Olfr180	ENSMUST00000171656.2:c.739del	ENSMUSP00000128358.1:p.Ser247LeufsTer31	H-2-Kb	9	31	0	KTYQWLYFI	NA	NetMHCpan	171.2	NA	NA	181	0.271	384.332	NA	NA	NA	307.23	NA	171.2	NA	461.4344339	NA	521.4948213	SSC_p20	0.585714286	0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.281	181	0	0	NA	16qC1.2	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr16	3592523	3592523	GA	G	ENSMUST00000216259.1	5	ENSMUSG00000051003	FS	G/X	42	Olfr161	ENSMUST00000216259.1:c.128del	ENSMUSP00000150825.1:p.Asn43ThrfsTer46	H-2-Kb	9	39	0	WMYASPPPL	NA	NetMHCpan	187.9	NA	NA	203	0.232	209.738	NA	NA	NA	330.1	NA	187.9	NA	192.357888	NA	227.1171867	SSC_p20	-0.185714286	-0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.239	203	0	0	NA	16qA1	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr15	81640487	81640487	A	C	ENSMUST00000068387.10	1	ENSMUSG00000055024	missense	K/T	1406	Ep300	ENSMUST00000068387.10:c.4217A>C	ENSMUSP00000066789.4:p.Lys1406Thr	H-2-Kb	9	5	7	VHFFRPTCL	VHFFRPKCL	NetMHCpan	109.6	332.9	3.037	192	0.214	143.972	300.751	2.089	761.07	352.63	332.9	109.6	268.6024688	161.1053638	216.8952295	126.8381795	SSC_p20	0.728571429	0.728571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.224	192	0	0	NA	15qE1	chr15-72009072-90409701	7	4	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr15	100408102	100408102	T	C	ENSMUST00000023774.11	1	ENSMUSG00000023030	missense	K/R	143	Slc11a2	ENSMUST00000023774.11:c.428A>G	ENSMUSP00000023774.5:p.Lys143Arg	H-2-Kb	9	4	8	VCHRQYPRV	VCHRQYPKV	SMMPMBEC	388.374	586.476	1.51	122	0.074	481.224	1037.119	2.155	1125.58	442.32	1956.2	1172.8	948.6587133	520.1277201	586.4756699	388.3738676	SSC_p20	-2.057142857	-1.057142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.087	122	0	0	NA	15qF1	chr15-97680059-102454328	7	4	3	0.9	5.307106465	RARE KARYOTYPE	1	0.513020292	sgMsh2	cell line
chr16	59345618	59345618	G	T	ENSMUST00000207927.2	5	ENSMUSG00000066257	missense	L/M	28	Olfr206	ENSMUST00000207927.2:c.82C>A	ENSMUSP00000146906.2:p.Leu28Met	H-2-Kb	9	10	2	LMVFFLIYV	LLVFFLIYV	SMM	172.628	1318.591	7.638	253	0.265	363.916	1952.655	5.366	2586.72	523.54	9504.5	3566.5	1318.590675	172.6275075	1222.503187	204.2913602	SSC_p20	3	3.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.271	253	0	0	NA	16qC1.3	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr17	23478497	23478497	A	G	ENSMUST00000171996.2	1	ENSMUSG00000091407	missense	Y/H	74	Vmn2r117	ENSMUST00000171996.2:c.220T>C	ENSMUSP00000126885.1:p.Tyr74His	H-2-Db	9	11	1	HALALAFSI	YALALAFSI	SMMPMBEC	270.751	109.287	0.404	319	0.016	455.429	104.6	0.23	59.3	626.66	126.5	751	99.91254004	284.1973343	109.2873763	270.7509568	SSC_p20	2.528571429	2.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.017	319	0	0	NA	17qA3.3	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.100245344	sgMsh2	cell line
chr17	18304169	18304169	GA	G	ENSMUST00000079206.7	5	ENSMUSG00000079698	FS	K/X	142	Vmn2r93	ENSMUST00000079206.7:c.432del	ENSMUSP00000078200.6:p.Lys144AsnfsTer38	H-2-Kb	8	34	0	ISLNFHRL	NA	NetMHC	3.04	NA	NA	392	0.27	3.466	NA	NA	NA	3.04	NA	4.9	NA	3.378625068	NA	3.554184757	SSC_p20	-0.228571429	-0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2704	392	0	0	NA	17qA3.2	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr17	31620961	31620961	C	T	ENSMUST00000236853.1	NA	ENSMUSG00000024039	missense	R/H	333	Cbs	ENSMUST00000236853.1:c.998G>A	ENSMUSP00000158269.1:p.Arg333His	H-2-Kb	8	5	7	DSFAFAHM	DSFAFARM	NetMHC	8.8	8.92	1.014	211	0.104	21.271	16.63	0.782	8.92	8.8	36.8	35.2	16.20839455	20.97683683	17.05061311	21.56453014	SSC_p20	1.014285714	1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.1	211	0	0	NA	17qB1	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.589678496	sgMsh2	cell line
chr17	14670751	14670751	A	G	ENSMUST00000170872.2	1	ENSMUSG00000023885	missense	V/A	1039	Thbs2	ENSMUST00000170872.2:c.3116T>C	ENSMUSP00000128308.1:p.Val1039Ala	H-2-Kb	8	5	7	SSSRFYAV	SSSRFYVV	NetMHC	13.14	84.29	6.415	97	0.196	71.128	166.876	2.346	84.29	13.14	132.5	56.8	201.251905	85.45549615	244.1968177	108.5775406	SSC_p20	0.2	0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	97	0	0	NA	17qA2	chr17-3079405-17704414	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr17	20574197	20574197	CA	C	ENSMUST00000169559.2	5	ENSMUSG00000091259	FS	C/X	737	Vmn2r110	ENSMUST00000169559.2:c.2209del	ENSMUSP00000129347.1:p.Cys737AlafsTer78	H-2-Kb	8	33	0	VTPWHSYL	NA	NetMHC	19.7	NA	NA	358	0.332	40.378	NA	NA	NA	19.7	NA	32.7	NA	48.05515695	NA	71.73646964	SSC_p20	-0.671428571	-0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.337	358	0	0	NA	17qA3.2	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr17	14670751	14670751	A	G	ENSMUST00000170872.2	1	ENSMUSG00000023885	missense	V/A	1039	Thbs2	ENSMUST00000170872.2:c.3116T>C	ENSMUSP00000128308.1:p.Val1039Ala	H-2-Kb	8	6	6	SSRFYAVM	SSRFYVVM	NetMHCpan	22.1	48.2	2.181	97	0.196	35.479	153.102	4.315	166.33	22.57	48.2	22.1	139.8749679	48.38825938	172.8781076	59.94321055	SSC_p20	0.585714286	0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	97	0	0	NA	17qA2	chr17-3079405-17704414	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr17	37382656	37382656	T	C	ENSMUST00000215518.1	5	ENSMUSG00000094884	missense	Y/H	30	Olfr105-ps	ENSMUST00000215518.1:c.88T>C	ENSMUSP00000154753.1:p.Tyr30His	H-2-Kb	8	8	4	LAMHFINV	LAMYFINV	NetMHCpan	38.2	31.6	0.827	409	0.274	115.449	106.2	0.92	39.92	67.69	31.6	38.2	226.3288934	224.7708563	172.480499	163.2074578	SSC_p20	1.214285714	1.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.276	409	0	0	NA	17qB1	chr17-37272599-44814927	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr17	18304169	18304169	GA	G	ENSMUST00000079206.7	5	ENSMUSG00000079698	FS	K/X	142	Vmn2r93	ENSMUST00000079206.7:c.432del	ENSMUSP00000078200.6:p.Lys144AsnfsTer38	H-2-Kb	8	29	0	LGHYFISL	NA	NetMHCpan	38	NA	NA	392	0.27	130.255	NA	NA	NA	92.73	NA	38	NA	219.6544469	NA	167.7799266	SSC_p20	0.771428571	0.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2704	392	0	0	NA	17qA3.2	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr17	28691801	28691801	C	A	ENSMUST00000004990.13	1	ENSMUSG00000053436	missense	P/H	21	Mapk14	ENSMUST00000004990.13:c.62C>A	ENSMUSP00000004990.6:p.Pro21His	H-2-Kb	8	10	2	VHERYQNL	VPERYQNL	SMMPMBEC	69.142	86.445	1.25	27	0.185	92.674	285.683	3.083	483.92	114.92	1111.1	352.6	87.44601036	70.42713151	86.44502416	69.1416915	SSC_p20	-2.242857143	-2.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.193	27	0	0	NA	17qA3.3	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr17	38130571	38130571	A	G	ENSMUST00000216804.1	5	ENSMUSG00000067186	missense	L/P	207	Olfr132	ENSMUST00000216804.1:c.620T>C	ENSMUSP00000149593.1:p.Leu207Pro	H-2-Kb	8	8	4	VILPVLPL	VILLVLPL	SMM	110.851	58.175	0.525	169	0.178	154.63	83.386	0.539	94.87	162.76	146.5	146.5	58.17548331	110.8510982	71.90183929	165.0973111	SSC_p20	2.414285714	2.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.185	169	0	0	NA	17qB1	chr17-37272599-44814927	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr17	31620961	31620961	C	T	ENSMUST00000236853.1	NA	ENSMUSG00000024039	missense	R/H	333	Cbs	ENSMUST00000236853.1:c.998G>A	ENSMUSP00000158269.1:p.Arg333His	H-2-Kb	8	7	5	FAFAHMLI	FAFARMLI	NetMHCpan	92.2	289.1	3.136	211	0.104	253.789	1434.691	5.653	732.7	179.68	289.1	92.2	2136.682534	327.8989304	2156.453014	410.9036509	SSC_p20	1.914285714	1.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.1	211	0	0	NA	17qB1	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.589678496	sgMsh2	cell line
chr17	22146436	22146436	A	G	ENSMUST00000080249.5	1	ENSMUSG00000063383	missense	C/R	86	Zfp947	ENSMUST00000080249.5:c.256T>C	ENSMUSP00000079137.5:p.Cys86Arg	H-2-Kb	8	7	5	KSYERHEL	KSYECHEL	NetMHCpan	80.7	110	1.363	185	0.303	257.706	143.357	0.556	190.09	201.55	110	80.7	139.2323008	313.8629122	147.4823333	342.5626424	SSC_p20	-1.857142857	-1.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.296	185	0	0	NA	17qA3.3	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr17	20502847	20502847	A	AT	ENSMUST00000233982.1	NA	ENSMUSG00000043537	FS	-/X	183-184	Vmn1r225	ENSMUST00000233982.1:c.553dup	ENSMUSP00000156633.1:p.Trp185LeufsTer5	H-2-Kb	8	8	6	VYIAFLGI	VYIAFWVF	NetMHCpan	132.8	2122.5	15.983	196	0.27	315.408	2062.886	6.54	2153.98	265.44	2122.5	132.8	2003.272365	381.7156799	1777.215122	365.3759857	SSC_p20	2.242857143	2.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.273	196	0	0	NA	17qA3.2	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr17	18304169	18304169	GA	G	ENSMUST00000079206.7	5	ENSMUSG00000079698	FS	K/X	142	Vmn2r93	ENSMUST00000079206.7:c.432del	ENSMUSP00000078200.6:p.Lys144AsnfsTer38	H-2-Kb	8	36	0	LNFHRLLL	NA	NetMHCpan	38.4	NA	NA	392	0.27	466.642	NA	NA	NA	319.89	NA	38.4	NA	715.7148034	NA	613.3946729	SSC_p20	0.428571429	0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2704	392	0	0	NA	17qA3.2	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr17	37751964	37751964	A	G	ENSMUST00000174675.3	5	ENSMUSG00000060017	missense	I/V	37	Olfr121	ENSMUST00000174675.3:c.109A>G	ENSMUSP00000133865.3:p.Ile37Val	H-2-Kb	8	4	8	CFLLFTLV	CFLLFTLI	SMM	253.945	461.041	1.816	495	0.248	479.578	724.227	1.51	850.4	581.81	2002	2533.9	461.0414792	253.9451951	598.0534499	377.3462166	SSC_p20	2.928571429	2.928571429	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.244	495	0	0	NA	17qB1	chr17-37272599-44814927	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr17	30761096	30761096	GT	G	ENSMUST00000236140.1	NA	ENSMUSG00000033826	FS	F/X	3035	Dnah8	ENSMUST00000236140.1:c.9108del	ENSMUSP00000157469.1:p.Phe3036LeufsTer5	H-2-Kb	8	5	8	TSLDLVFL	TSLDLVFF	SMM	245.89	3997.054	16.255	131	0.206	452.067	3837.777	8.489	5159.69	706.65	3678.5	633.9	3997.053856	245.8895091	3394.220093	270.2340064	SSC_p20	2.014285714	2.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.202	131	0	0	NA	17qA3.3	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr17	25878357	25878357	A	G	ENSMUST00000176696.2	3	ENSMUSG00000071192	missense	M/T	331	Wfikkn1	ENSMUST00000176696.2:c.992T>C	ENSMUSP00000135083.2:p.Met331Thr	H-2-Kb	8	9	3	SCTTFPAL	SCMTFPAL	SMMPMBEC	325.642	108.578	0.333	27	0.296	490.693	94.264	0.192	79.95	737.48	59.8	644.3	157.3040847	337.0854446	108.5775406	325.64169	SSC_p20	1.128571429	1.128571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.296	27	0	0	NA	17qA3.3	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr17	20047997	20047997	T	C	ENSMUST00000168050.2	5	ENSMUSG00000090315	missense	Y/C	70	Vmn2r104	ENSMUST00000168050.2:c.209A>G	ENSMUSP00000129895.1:p.Tyr70Cys	H-2-Kb	8	5	7	STKPYVCL	STKPYVYL	SMM	396.954	130.239	0.328	111	0.216	436.567	138.016	0.316	157.25	1358.6	72.8	468.8	130.2386842	396.9538331	145.794117	404.3337559	SSC_p20	0.428571429	0.428571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	111	0	0	NA	17qA3.2	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr17	18304169	18304169	GA	G	ENSMUST00000079206.7	5	ENSMUSG00000079698	FS	K/X	142	Vmn2r93	ENSMUST00000079206.7:c.432del	ENSMUSP00000078200.6:p.Lys144AsnfsTer38	H-2-Kb	9	34	0	ISLNFHRLL	NA	NetMHC	4.13	NA	NA	392	0.27	43.694	NA	NA	NA	4.13	NA	7.2	NA	80.18811416	NA	80.95617863	SSC_p20	0.428571429	0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2704	392	0	0	NA	17qA3.2	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr17	14670751	14670751	A	G	ENSMUST00000170872.2	1	ENSMUSG00000023885	missense	V/A	1039	Thbs2	ENSMUST00000170872.2:c.3116T>C	ENSMUSP00000128308.1:p.Val1039Ala	H-2-Kb	9	5	7	SSSRFYAVM	SSSRFYVVM	NetMHC	10.18	60.31	5.924	97	0.196	68.885	112.801	1.638	60.31	10.18	30.7	15.8	184.9737069	128.2655418	165.2913018	121.9691508	SSC_p20	0.585714286	0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	97	0	0	NA	17qA2	chr17-3079405-17704414	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr17	20502847	20502847	A	AT	ENSMUST00000233982.1	NA	ENSMUSG00000043537	FS	-/X	183-184	Vmn1r225	ENSMUST00000233982.1:c.553dup	ENSMUSP00000156633.1:p.Trp185LeufsTer5	H-2-Kb	9	7	7	TVYIAFLGI	TVYIAFWVF	NetMHCpan	60.4	1563.2	25.881	196	0.27	124.387	895.217	7.197	1484.16	70.08	1563.2	60.4	306.2739079	178.6940122	268.0711022	196.4490803	SSC_p20	2.242857143	2.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.273	196	0	0	NA	17qA3.2	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr17	20574197	20574197	CA	C	ENSMUST00000169559.2	5	ENSMUSG00000091259	FS	C/X	737	Vmn2r110	ENSMUST00000169559.2:c.2209del	ENSMUSP00000129347.1:p.Cys737AlafsTer78	H-2-Kb	9	78	0	SWWLWKSSL	NA	NetMHC	79.63	NA	NA	358	0.332	124.826	NA	NA	NA	79.63	NA	152.8	NA	96.8523137	NA	158.2158541	SSC_p20	0.042857143	0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.337	358	0	0	NA	17qA3.2	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr17	20030036	20030036	A	G	ENSMUST00000168050.2	5	ENSMUSG00000090315	missense	F/L	658	Vmn2r104	ENSMUST00000168050.2:c.1972T>C	ENSMUSP00000129895.1:p.Phe658Leu	H-2-Kb	9	11	1	LAVAFTMAL	FAVAFTMAL	NetMHC	89.34	100.18	1.121	932	0.234	263.25	298.368	1.133	100.18	89.34	166.1	107.6	430.63567	418.8996524	526.3201534	458.4056903	SSC_p20	2.228571429	2.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe	3	0.234	932	0	0	NA	17qA3.2	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr17	37751964	37751964	A	G	ENSMUST00000174675.3	5	ENSMUSG00000060017	missense	I/V	37	Olfr121	ENSMUST00000174675.3:c.109A>G	ENSMUSP00000133865.3:p.Ile37Val	H-2-Kb	9	11	1	VLLMFLVSL	ILLMFLVSL	NetMHC	127.87	166.59	1.303	495	0.248	185.568	235.147	1.267	166.59	127.87	243.7	206.3	294.5167504	200.0368468	226.5948317	171.0999962	SSC_p20	2.785714286	3.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.244	495	0	0	NA	17qB1	chr17-37272599-44814927	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr17	31620961	31620961	C	T	ENSMUST00000236853.1	NA	ENSMUSG00000024039	missense	R/H	333	Cbs	ENSMUST00000236853.1:c.998G>A	ENSMUSP00000158269.1:p.Arg333His	H-2-Kb	9	5	7	DSFAFAHML	DSFAFARML	NetMHCpan	65.7	77.4	1.178	211	0.104	270.622	254.018	0.939	71.72	133.76	77.4	65.7	430.63567	407.4834739	664.1252616	598.7561676	SSC_p20	1.671428571	1.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.1	211	0	0	NA	17qB1	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.589678496	sgMsh2	cell line
chr17	37382656	37382656	T	C	ENSMUST00000215518.1	5	ENSMUSG00000094884	missense	Y/H	30	Olfr105-ps	ENSMUST00000215518.1:c.88T>C	ENSMUSP00000154753.1:p.Tyr30His	H-2-Kb	9	7	5	VLAMHFINV	VLAMYFINV	NetMHCpan	171.6	152.5	0.889	409	0.274	293.012	230.854	0.788	138.03	197.65	152.5	171.6	338.9299909	422.7756832	309.2074862	388.3738676	SSC_p20	1.214285714	2.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.276	409	0	0	NA	17qB1	chr17-37272599-44814927	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr17	22602492	22602492	A	G	ENSMUST00000097381.4	1	ENSMUSG00000094921	missense	T/A	149	Vmn2r112	ENSMUST00000097381.4:c.445A>G	ENSMUSP00000094994.3:p.Thr149Ala	H-2-Kb	9	10	2	TAVTLYTIL	TTVTLYTIL	NetMHCpan	171.1	159.6	0.933	278	0.176	247.205	307.665	1.245	316.62	263.07	159.6	171.1	382.0410236	277.4022632	298.7101638	231.3396105	SSC_p20	1.942857143	1.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.17	278	0	0	NA	17qA3.3	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr17	19053653	19053653	C	A	ENSMUST00000170424.2	5	ENSMUSG00000096717	missense	S/Y	54	Vmn2r98	ENSMUST00000170424.2:c.161C>A	ENSMUSP00000131261.1:p.Ser54Tyr	H-2-Kb	9	7	5	HTFYYLKKM	HTFYSLKKM	NetMHCpan	162.4	2676.5	16.481	165	0.182	315.655	1812.209	5.741	2171.47	303.78	2676.5	162.4	1432.550696	345.2311699	1452.947761	327.5291816	SSC_p20	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.176	165	0	0	NA	17qA3.2	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr17	38130571	38130571	A	G	ENSMUST00000216804.1	5	ENSMUSG00000067186	missense	L/P	207	Olfr132	ENSMUST00000216804.1:c.620T>C	ENSMUSP00000149593.1:p.Leu207Pro	H-2-Kb	9	7	5	SVILPVLPL	SVILLVLPL	NetMHC	320.56	300.43	0.937	169	0.178	440.376	337.749	0.767	300.43	320.56	296.7	374.8	375.0679891	505.9527957	407.6148523	697.02764	SSC_p20	2.414285714	2.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.185	169	0	0	NA	17qB1	chr17-37272599-44814927	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr17	28691801	28691801	C	A	ENSMUST00000004990.13	1	ENSMUSG00000053436	missense	P/H	21	Mapk14	ENSMUST00000004990.13:c.62C>A	ENSMUSP00000004990.6:p.Pro21His	H-2-Kb	9	9	3	EVHERYQNL	EVPERYQNL	SMMPMBEC	314.232	458.406	1.459	27	0.185	372.707	460.452	1.235	397.99	404.92	1133.7	860.4	462.4981501	340.4944207	458.4056903	314.2317036	SSC_p20	-2.242857143	-2.185714286	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.193	27	0	0	NA	17qA3.3	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr17	32377792	32377792	G	T	ENSMUST00000236409.1	NA	ENSMUSG00000024050	missense	L/I	323	Wiz	ENSMUST00000236409.1:c.967C>A	ENSMUSP00000158082.1:p.Leu323Ile	H-2-Kb	9	3	9	IYFKHKEHI	IYFKHKEHL	SMMPMBEC	335.158	144.961	0.433	122	0.279	468.818	161.055	0.344	213.66	577.21	153.8	519.7	168.310031	417.9362099	144.9606074	335.1583163	SSC_p20	-1.485714286	-1.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.292	122	0	0	NA	17qB1	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr17	56632320	56632320	T	G	ENSMUST00000112979.3	1	ENSMUSG00000040828	missense	F/V	50	Catsperd	ENSMUST00000112979.3:c.148T>G	ENSMUSP00000108603.2:p.Phe50Val	H-2-Db	9	5	7	YAFPNTVVL	YAFPNTFVL	NetMHCpan	9.1	7.6	0.835	170	0.218	33.615	30.922	0.92	12.57	10.27	7.6	9.1	49.27424743	62.03260224	49.83907806	56.96000254	SSC_p20	1.314285714	1.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.213	170	0	0	NA	17qD	chr17-55868030-57306544	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr18	61299670	61299670	T	C	ENSMUST00000075299.12	1	ENSMUSG00000033871	missense	T/A	954	Ppargc1b	ENSMUST00000075299.12:c.2860A>G	ENSMUSP00000074771.6:p.Thr954Ala	H-2-Db	9	4	8	LSVRNGAAL	LSVRNGATL	NetMHC	30.06	13.56	0.451	88	0.318	93.003	52.144	0.561	13.56	30.06	30.9	63.1	73.38714626	124.0566359	76.30798752	122.905127	SSC_p20	0.457142857	0.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.323	88	0	0	NA	18qE1	chr18-5046666-88869177	4	2	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr18	37680939	37680939	G	T	ENSMUST00000192931.1	1	ENSMUSG00000103037	missense	S/I	161	Pcdhgb1	ENSMUST00000192931.1:c.482G>T	ENSMUSP00000141348.1:p.Ser161Ile	H-2-Db	9	3	9	NSLKMYTVI	NSLKMYTVS	NetMHC	158.89	19903.22	125.264	181	0.453	356.594	9153.28	25.669	19903.22	158.89	14990.9	524.3	2996.539453	391.3992598	3315.660076	321.7881152	SSC_p20	1.214285714	1.214285714	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.454	181	0	0	NA	18qB3	chr18-5046666-88869177	4	2	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr18	37485357	37485357	A	G	ENSMUST00000053856.5	NA	ENSMUSG00000046387	missense	I/V	67	Pcdhb17	ENSMUST00000053856.5:c.199A>G	ENSMUSP00000055072.4:p.Ile67Val	H-2-Db	9	11	1	VSQENKEHL	ISQENKEHL	SMMPMBEC	398.63	514.719	1.291	95	0.368	431.345	566.809	1.314	1558.56	1221.5	373.7	408.1	618.8993121	454.5901278	514.7187632	398.6300187	SSC_p20	-2.471428571	-2.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.368	95	0	0	NA	18qB3	chr18-5046666-88869177	4	2	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr17	38148878	38148878	T	C	ENSMUST00000215078.2	5	ENSMUSG00000063240	missense	C/R	97	Olfr133	ENSMUST00000215078.2:c.289T>C	ENSMUSP00000149451.2:p.Cys97Arg	H-2-Kb	8	6	6	ISYMRRAV	ISYMRCAV	NetMHC	16.45	13.51	0.821	425	0.254	49.956	47.314	0.947	13.51	16.45	20.2	32.5	86.64430052	79.2027024	74.42862571	67.41243274	SSC_p20	-0.457142857	-0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.255	425	0	0	NA	17qB1	chr17-37272599-44814927	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr18	37421758	37421758	A	G	ENSMUST00000053073.5	NA	ENSMUSG00000051486	missense	N/S	47	Pcdhb11	ENSMUST00000053073.5:c.140A>G	ENSMUSP00000056148.4:p.Asn47Ser	H-2-Kb	8	5	7	SGYLVASV	SGYLVANV	NetMHC	21.45	8.74	0.407	379	0.264	72.422	32.915	0.454	8.74	21.45	35.3	69.9	30.53092764	74.94454029	37.56124682	85.8499408	SSC_p20	1.642857143	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.263	379	0	0	NA	18qB3	chr18-5046666-88869177	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr18	37357271	37357271	G	T	ENSMUST00000051163.2	NA	ENSMUSG00000045876	missense	Q/H	667	Pcdhb8	ENSMUST00000051163.2:c.2001G>T	ENSMUSP00000054371.1:p.Gln667His	H-2-Kb	8	9	3	FSHPYLPL	FSQPYLPL	NetMHCpan	21	50.5	2.405	350	0.214	35.781	51.174	1.43	40.55	26.3	50.5	21	51.84895408	45.26265239	74.60020141	50.90260401	SSC_p20	-0.128571429	-0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.217	350	0	0	NA	18qB3	chr18-5046666-88869177	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr17	80433721	80433721	T	A	ENSMUST00000068714.6	2	ENSMUSG00000024241	missense	Q/L	545	Sos1	ENSMUST00000068714.6:c.1634A>T	ENSMUSP00000067786.5:p.Gln545Leu	H-2-Kb	8	8	4	ISLLYRST	ISLQYRST	NetMHC	76.46	115.51	1.511	97	0.186	118.863	128.993	1.085	115.51	76.46	315.3	141.4	142.4754378	146.8047136	96.10367602	96.32521787	SSC_p20	-0.071428571	0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.181	97	0	0	NA	17qE3	chr17-57306727-94740433	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr17	78824672	78824672	A	G	ENSMUST00000097281.3	5	ENSMUSG00000039414	missense	V/A	334	Heatr5b	ENSMUST00000097281.3:c.1001T>C	ENSMUSP00000094882.2:p.Val334Ala	H-2-Kb	8	5	7	ATFLSHAL	ATFLSHVL	NetMHCpan	70.6	191.4	2.711	150	0.127	100.304	230.385	2.297	751.74	145.04	191.4	70.6	213.1768301	90.51905263	247.5939338	110.0880046	SSC_p20	1.071428571	1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.131	150	0	0	NA	17qE3	chr17-57306727-94740433	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.77247883	sgMsh2	cell line
chr18	61081937	61081937	T	C	ENSMUST00000025522.10	1	ENSMUSG00000024620	missense	Y/H	1009	Pdgfrb	ENSMUST00000025522.10:c.3025T>C	ENSMUSP00000025522.4:p.Tyr1009His	H-2-Kb	8	7	5	SSVLHTAV	SSVLYTAV	NetMHC	157.61	12.1	0.077	116	0.216	248.021	44.005	0.177	12.1	157.61	29.7	355.2	58.30959165	225.8083514	62.47985313	270.2340064	SSC_p20	1.328571429	1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.222	116	0	0	NA	18qE1	chr18-5046666-88869177	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr17	40228805	40228805	A	G	ENSMUST00000026499.5	1	ENSMUSG00000025433	missense	V/A	167	Crisp3	ENSMUST00000026499.5:c.500T>C	ENSMUSP00000026499.5:p.Val167Ala	H-2-Kb	8	10	2	YACRYCPV	YVCRYCPV	SMMPMBEC	174.478	161.339	0.925	289	0.228	239.579	312.449	1.304	429.13	286.52	494.4	303	195.7672319	192.6371303	161.3392375	174.4777291	SSC_p20	0.514285714	0.514285714	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.242	289	0	0	NA	17qB2	chr17-37272599-44814927	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr18	37941753	37941753	A	G	ENSMUST00000043498.8	1	ENSMUSG00000024454	missense	S/P	312	Hdac3	ENSMUST00000043498.8:c.934T>C	ENSMUSP00000037981.7:p.Ser312Pro	H-2-Kb	8	6	6	WTYETPLL	WTYETSLL	SMMPMBEC	359.534	238.638	0.664	178	0.287	430.684	272.762	0.633	289.23	493.46	348.5	494.9	256.2949211	367.908651	238.6382195	359.5340277	SSC_p20	-0.028571429	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.296	178	0	0	NA	18qB3	chr18-5046666-88869177	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr17	84692924	84692924	A	T	ENSMUST00000045714.14	1	ENSMUSG00000024254	missense	Y/F	304	Abcg8	ENSMUST00000045714.14:c.911A>T	ENSMUSP00000035246.8:p.Tyr304Phe	H-2-Kb	8	8	4	MVQFFTSI	MVQYFTSI	NetMHCpan	56	76.4	1.364	126	0.175	405.83	426.687	1.051	326.46	509.78	76.4	56	545.4312289	396.9538331	526.9143181	414.7056956	SSC_p20	1.328571429	1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.183	126	0	0	NA	17qE4	chr17-57306727-94740433	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr17	58294347	58294347	GA	G	ENSMUST00000076038.6	2	ENSMUSG00000038048	FS	E/X	830	Cntnap5c	ENSMUST00000076038.6:c.2491del	ENSMUSP00000075416.5:p.Ile831SerfsTer12	H-2-Kb	8	8	5	VFLESLAL	VFLEILGI	SMM	241.402	3449.372	14.289	214	0.196	469.793	3333.027	7.095	3279.64	517.17	1794.2	607.2	3449.371732	241.4015198	3386.413603	422.4156501	SSC_p20	1.671428571	1.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.191	214	0	0	NA	17qD	chr17-57306727-94740433	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr18	13015915	13015915	T	G	ENSMUST00000041676.2	1	ENSMUSG00000037346	missense	D/E	111	Hrh4	ENSMUST00000041676.2:c.333T>G	ENSMUSP00000041061.2:p.Asp111Glu	H-2-Kb	8	8	4	ISYERYQS	ISYDRYQS	NetMHCpan	245.3	408.1	1.664	247	0.138	406.318	624.792	1.538	1091.95	533.49	408.1	245.3	540.4306853	347.3281635	709.1530907	465.3074435	SSC_p20	-2.242857143	-1.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.137	247	0	0	NA	18qA1	chr18-5046666-88869177	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	0.80785954	sgMsh2	cell line
chr18	37355814	37355814	A	G	ENSMUST00000051163.2	NA	ENSMUSG00000045876	missense	T/A	182	Pcdhb8	ENSMUST00000051163.2:c.544A>G	ENSMUSP00000054371.1:p.Thr182Ala	H-2-Kb	8	5	7	LHFHVVAL	LHFHVVTL	SMMPMBEC	402.476	633.49	1.574	231	0.355	420.325	659.284	1.569	1527.68	933.94	394.2	428.8	685.0779666	411.8508816	633.4903447	402.476011	SSC_p20	1.485714286	1.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.35	231	0	0	NA	18qB3	chr18-5046666-88869177	4	2	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr18	37357271	37357271	G	T	ENSMUST00000051163.2	NA	ENSMUSG00000045876	missense	Q/H	667	Pcdhb8	ENSMUST00000051163.2:c.2001G>T	ENSMUSP00000054371.1:p.Gln667His	H-2-Kb	8	7	5	DGFSHPYL	DGFSQPYL	SMM	241.958	846.72	3.499	350	0.214	491.263	2308.602	4.699	7959.71	1456.94	3296.7	675.1	846.7203545	241.9580078	1320.504848	307.4255792	SSC_p20	-0.1	-0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.217	350	0	0	NA	18qB3	chr18-5046666-88869177	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr18	13015915	13015915	T	G	ENSMUST00000041676.2	1	ENSMUSG00000037346	missense	D/E	111	Hrh4	ENSMUST00000041676.2:c.333T>G	ENSMUSP00000041061.2:p.Asp111Glu	H-2-Kb	9	8	4	ISYERYQSV	ISYDRYQSV	NetMHC	4.58	6.82	1.489	247	0.138	10.587	11.524	1.089	6.82	4.58	7.3	6.1	17.91059444	16.25960534	15.74889183	15.07474589	SSC_p20	-1.528571429	-1.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.137	247	0	0	NA	18qA1	chr18-5046666-88869177	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	0.80785954	sgMsh2	cell line
chr17	49070103	49070103	G	T	ENSMUST00000046254.2	1	ENSMUSG00000040490	missense	D/Y	71	Lrfn2	ENSMUST00000046254.2:c.211G>T	ENSMUSP00000047573.2:p.Asp71Tyr	H-2-Kb	9	7	5	IGRQYFANM	IGRQDFANM	NetMHC	4.81	270.13	56.16	70	0.171	60.783	529.722	8.715	270.13	4.81	195.6	9.3	1104.358301	135.5532704	789.3143527	112.2664526	SSC_p20	-0.9	-0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.188	70	0	0	NA	17qC	chr17-44879477-49458887	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr17	80433721	80433721	T	A	ENSMUST00000068714.6	2	ENSMUSG00000024241	missense	Q/L	545	Sos1	ENSMUST00000068714.6:c.1634A>T	ENSMUSP00000067786.5:p.Gln545Leu	H-2-Kb	9	8	4	ISLLYRSTL	ISLQYRSTL	NetMHC	9.44	10.14	1.074	97	0.186	45.936	64.304	1.4	10.14	9.44	16.6	11.5	126.2147176	80.37296686	112.0082469	81.70525693	SSC_p20	0.585714286	0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.181	97	0	0	NA	17qE3	chr17-57306727-94740433	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr17	84692924	84692924	A	T	ENSMUST00000045714.14	1	ENSMUSG00000024254	missense	Y/F	304	Abcg8	ENSMUST00000045714.14:c.911A>T	ENSMUSP00000035246.8:p.Tyr304Phe	H-2-Kb	9	7	5	QMVQFFTSI	QMVQYFTSI	NetMHCpan	38.2	56.7	1.484	126	0.175	110.804	144.177	1.301	109.66	76.36	56.7	38.2	178.6940122	145.2479461	201.0249672	188.9078477	SSC_p20	1.328571429	1.328571429	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.183	126	0	0	NA	17qE4	chr17-57306727-94740433	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr17	67769502	67769502	GT	G	ENSMUST00000035471.8	1	ENSMUSG00000032796	FS	S/X	1090	Lama1	ENSMUST00000035471.8:c.3273del	ENSMUSP00000043957.7:p.Pro1092LeufsTer10	H-2-Kb	9	10	4	RSFLTVSPV	NA	NetMHC	98.34	NA	NA	70	0.129	327.26	NA	NA	NA	98.34	NA	147.4	NA	507.1191374	NA	676.4722721	SSC_p20	1.7	1.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.138	70	0	0	NA	17qE1.1	chr17-57306727-94740433	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.813756325	sgMsh2	cell line
chr17	80216772	80216772	T	C	ENSMUST00000134652.1	3	ENSMUSG00000046196	missense	Y/H	287	Ttc39d	ENSMUST00000134652.1:c.859T>C	ENSMUSP00000123158.1:p.Tyr287His	H-2-Kb	9	8	4	LFYHNYVRV	LFYYNYVRV	NetMHC	102.39	66.55	0.65	243	0.239	111.758	88.353	0.791	66.55	102.39	231.3	294.6	89.55915762	119.7043685	87.14651012	103.8125837	SSC_p20	-0.771428571	0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.242	243	0	0	NA	17qE3	chr17-57306727-94740433	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr17	67769502	67769502	GT	G	ENSMUST00000035471.8	1	ENSMUSG00000032796	FS	S/X	1090	Lama1	ENSMUST00000035471.8:c.3273del	ENSMUSP00000043957.7:p.Pro1092LeufsTer10	H-2-Kb	9	5	9	CSLGYRSFL	CSLGYRSFP	NetMHC	127.36	18447.05	144.842	70	0.129	218.346	7033.466	32.212	18447.05	127.36	11086.7	136.7	1383.916859	299.9922256	2980.231495	404.8088513	SSC_p20	0.485714286	0.485714286	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.138	70	0	0	NA	17qE1.1	chr17-57306727-94740433	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.813756325	sgMsh2	cell line
chr17	40783774	40783774	A	G	ENSMUST00000232709.1	NA	ENSMUSG00000023930	missense	Y/H	137	Crisp2	ENSMUST00000232709.1:c.409T>C	ENSMUSP00000156411.1:p.Tyr137His	H-2-Kb	9	6	6	SAVGHHTQL	SAVGHYTQL	NetMHC	129.64	22.75	0.175	162	0.321	201.5	45.866	0.228	22.75	129.64	39.1	238.6	67.15989369	235.0228021	52.63201534	167.9770694	SSC_p20	-0.428571429	-0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.323	162	0	0	NA	17qB2	chr17-37272599-44814927	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr17	67769502	67769502	GT	G	ENSMUST00000035471.8	1	ENSMUSG00000032796	FS	S/X	1090	Lama1	ENSMUST00000035471.8:c.3273del	ENSMUSP00000043957.7:p.Pro1092LeufsTer10	H-2-Kb	9	7	7	LGYRSFLTV	LGYRSFPDC	NetMHCpan	50.3	964.4	19.173	70	0.129	299.337	2460.378	8.219	3129.12	134.96	964.4	50.3	3281.78405	496.7181164	1791.636906	463.713778	SSC_p20	0.5	0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.138	70	0	0	NA	17qE1.1	chr17-57306727-94740433	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.813756325	sgMsh2	cell line
chr18	22920873	22920873	A	G	ENSMUST00000164186.7	5	ENSMUSG00000041923	missense	I/T	194	Nol4	ENSMUST00000164186.7:c.581T>C	ENSMUSP00000130950.1:p.Ile194Thr	H-2-Kb	9	11	1	TTMAYMKHM	ITMAYMKHM	NetMHCpan	67.1	23.3	0.347	82	0.28	276.977	150.303	0.543	53.86	145.4	23.3	67.1	318.5004131	545.8961105	246.7459312	408.5545015	SSC_p20	-0.128571429	-0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.304	82	0	0	NA	18qA2	chr18-5046666-88869177	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr18	37680939	37680939	G	T	ENSMUST00000192931.1	1	ENSMUSG00000103037	missense	S/I	161	Pcdhgb1	ENSMUST00000192931.1:c.482G>T	ENSMUSP00000141348.1:p.Ser161Ile	H-2-Kb	9	10	2	VIPNPHFSL	VSPNPHFSL	NetMHC	211.65	119.37	0.564	181	0.453	410.119	267.215	0.652	119.37	211.65	107.8	235.3	415.0591573	584.9382211	522.696991	774.9077422	SSC_p20	-0.585714286	0.228571429	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.454	181	0	0	NA	18qB3	chr18-5046666-88869177	4	2	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr17	58294347	58294347	GA	G	ENSMUST00000076038.6	2	ENSMUSG00000038048	FS	E/X	830	Cntnap5c	ENSMUST00000076038.6:c.2491del	ENSMUSP00000075416.5:p.Ile831SerfsTer12	H-2-Kb	9	5	8	LSGVFLESL	LSGVFLEIL	NetMHC	242.37	879.82	3.63	214	0.196	330.164	650.394	1.97	879.82	242.37	1759.5	600.1	372.4860392	325.1696473	420.9688878	335.1583163	SSC_p20	1.414285714	1.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.191	214	0	0	NA	17qD	chr17-57306727-94740433	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr17	78943279	78943279	GT	G	ENSMUST00000024887.5	1	ENSMUSG00000024082	FS	F/X	212	Ndufaf7	ENSMUST00000024887.5:c.639del	ENSMUSP00000024887.4:p.Phe213LeufsTer31	H-2-Kb	9	12	1	LMFFLCINF	NA	SMMPMBEC	178.752	NA	NA	291	0.223	217.478	NA	NA	NA	247.84	NA	1328.3	NA	187.1156015	NA	178.7516256	SSC_p20	2.242857143	3.157142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.217	291	0	0	NA	17qE3	chr17-57306727-94740433	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr17	56632320	56632320	T	G	ENSMUST00000112979.3	1	ENSMUSG00000040828	missense	F/V	50	Catsperd	ENSMUST00000112979.3:c.148T>G	ENSMUSP00000108603.2:p.Phe50Val	H-2-Kb	9	3	9	LFYAFPNTV	LFYAFPNTF	NetMHCpan	233	338.6	1.453	170	0.218	281.738	333.442	1.184	338.69	258.61	338.6	233	228.6177783	304.8667072	328.2842143	424.864065	SSC_p20	0.242857143	0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.213	170	0	0	NA	17qD	chr17-55868030-57306544	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr17	38148878	38148878	T	C	ENSMUST00000215078.2	5	ENSMUSG00000063240	missense	C/R	97	Olfr133	ENSMUST00000215078.2:c.289T>C	ENSMUSP00000149451.2:p.Cys97Arg	H-2-Kb	9	7	5	SYMRRAVQL	SYMRCAVQL	NetMHC	319.63	753.04	2.356	425	0.254	361.144	905.233	2.507	753.04	319.63	627.1	347.1	1340.01605	482.0698829	1057.426037	375.1889162	SSC_p20	-0.114285714	-0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.255	425	0	0	NA	17qB1	chr17-37272599-44814927	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr18	37941753	37941753	A	G	ENSMUST00000043498.8	1	ENSMUSG00000024454	missense	S/P	312	Hdac3	ENSMUST00000043498.8:c.934T>C	ENSMUSP00000037981.7:p.Ser312Pro	H-2-Kb	9	4	8	RCWTYETPL	RCWTYETSL	SMMPMBEC	408.555	698.634	1.71	178	0.287	457.95	789.442	1.724	880.25	477.4	638	438.5	1244.829868	714.6773197	698.6344547	408.5545015	SSC_p20	-0.7	-0.7	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.296	178	0	0	NA	18qB3	chr18-5046666-88869177	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr17	38148878	38148878	T	C	ENSMUST00000215078.2	5	ENSMUSG00000063240	missense	C/R	97	Olfr133	ENSMUST00000215078.2:c.289T>C	ENSMUSP00000149451.2:p.Cys97Arg	H-2-Kb	9	6	6	ISYMRRAVQ	ISYMRCAVQ	SMMPMBEC	104.292	84.967	0.815	425	0.254	431.473	302.462	0.701	455.95	695.41	737	1490.1	148.9738357	167.5367167	84.96694433	104.2917608	SSC_p20	-0.842857143	-0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.255	425	0	0	NA	17qB1	chr17-37272599-44814927	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr19	13705156	13705156	A	G	ENSMUST00000216366.1	5	ENSMUSG00000051156	missense	T/A	110	Olfr1491	ENSMUST00000216366.1:c.328A>G	ENSMUSP00000149071.1:p.Thr110Ala	H-2-Kb	8	5	7	QMFFFLAL	QMFFFLTL	NetMHCpan	14.6	11.8	0.808	339	0.215	24.739	38.93	1.574	42.4	28.16	11.8	14.6	35.46010359	21.31768301	51.13755976	32.48927349	SSC_p20	2.814285714	2.814285714	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.212	339	0	0	NA	19qA	chr19-11105367-41721414	7	5	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr19	4290661	4290661	T	C	ENSMUST00000088737.10	1	ENSMUSG00000024858	missense	M/V	257	Grk2	ENSMUST00000088737.10:c.769A>G	ENSMUSP00000086114.4:p.Met257Val	H-2-Kb	8	11	1	VSYAFHTP	MSYAFHTP	SMM	26.348	56.2	2.133	231	0.113	43.101	101.595	2.357	223.64	50.66	127.9	54.8	56.20047679	26.3475356	75.29046857	35.54184757	SSC_p20	-0.428571429	0.4	FALSE	FALSE	TRUE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.12	231	0	0	NA	19qA	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr19	5026399	5026399	T	C	ENSMUST00000236152.1	NA	ENSMUSG00000024891	missense	I/T	105	Slc29a2	ENSMUST00000236152.1:c.314T>C	ENSMUSP00000157780.1:p.Ile105Thr	H-2-Kb	8	10	2	ATLLLFAL	AILLLFAL	NetMHC	111.55	117.4	1.052	136	0.14	156.223	164.211	1.051	117.4	111.55	417.7	157.3	155.1457917	155.1457917	173.2766328	166.241711	SSC_p20	2.728571429	2.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.146	136	0	0	NA	19qA	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr19	13861984	13861984	A	G	ENSMUST00000074221.1	NA	ENSMUSG00000056858	missense	S/G	64	Olfr1502	ENSMUST00000074221.1:c.190A>G	ENSMUSP00000073843.1:p.Ser64Gly	H-2-Kb	8	6	6	MYFFLGHL	MYFFLSHL	NetMHCpan	44.5	18.4	0.413	376	0.199	150.3	102.23	0.68	79.22	142.57	18.4	44.5	125.2391179	163.2074578	128.7478543	158.0301673	SSC_p20	1.185714286	1.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	376	0	0	NA	19qA	chr19-11105367-41721414	7	5	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr19	38400469	38400469	T	A	ENSMUST00000054098.3	1	ENSMUSG00000044026	missense	L/M	75	Slc35g1	ENSMUST00000054098.3:c.223T>A	ENSMUSP00000061282.2:p.Leu75Met	H-2-Kb	8	9	3	LGMFYTVL	LGLFYTVL	NetMHCpan	25.8	40.3	1.562	148	0.189	215.12	141.085	0.656	251.45	252.44	40.3	25.8	145.794117	250.4609364	136.3766443	179.7794304	SSC_p20	1.471428571	1.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.194	148	0	0	NA	19qC3	chr19-11105367-41721414	7	5	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr19	31920923	31920923	A	G	ENSMUST00000075838.7	1	ENSMUSG00000052595	missense	R/G	236	A1cf	ENSMUST00000075838.7:c.706A>G	ENSMUSP00000075235.5:p.Arg236Gly	H-2-Kb	8	6	6	KILYVGNL	KILYVRNL	NetMHCpan	196.2	215.1	1.096	280	0.139	256.171	227.973	0.89	207.1	254.27	215.1	196.2	240.8463117	258.0714726	299.0473787	299.0473787	SSC_p20	1.585714286	1.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.14	280	0	0	NA	19qC1	chr19-11105367-41721414	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.825549895	sgMsh2	cell line
chr19	34112952	34112952	GA	G	ENSMUST00000025685.7	1	ENSMUSG00000056078	FS	K/X	178	Lipm	ENSMUST00000025685.7:c.536del	ENSMUSP00000025685.6:p.Lys179ArgfsTer24	H-2-Kb	8	20	0	RAPPWALL	NA	NetMHCpan	207	NA	NA	262	0.13	415.089	NA	NA	NA	290.99	NA	207	NA	539.1877292	NA	614.8086937	SSC_p20	1.014285714	1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.135	262	0	0	NA	19qC1	chr19-11105367-41721414	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.79606597	sgMsh2	cell line
chr19	34593964	34593964	C	A	ENSMUST00000168254.2	2	ENSMUSG00000079339	missense	L/F	364	Ifit1bl1	ENSMUST00000168254.2:c.1092G>T	ENSMUSP00000132781.1:p.Leu364Phe	H-2-Kb	8	10	2	KFLNMSNL	KLLNMSNL	SMM	168.554	495.154	2.938	847	0.08	272.729	557.277	2.043	972.23	323.26	619.4	481	495.1536674	168.5543635	495.1536674	222.1979255	SSC_p20	0.642857143	0.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.08	847	0	0	NA	19qC1	chr19-11105367-41721414	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.471742797	sgMsh2	cell line
chr19	5672533	5672533	G	A	ENSMUST00000113615.8	1	ENSMUSG00000054874	missense	A/V	1377	Pcnx3	ENSMUST00000113615.8:c.4130C>T	ENSMUSP00000109245.2:p.Ala1377Val	H-2-Kb	8	11	1	VSDYLNAL	ASDYLNAL	NetMHCpan	347.1	1320.6	3.805	84	0.131	389.737	1396.48	3.583	2502.1	436.46	1320.6	347.1	1345.054866	357.0590129	1447.904774	422.4156501	SSC_p20	0.042857143	0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.143	84	0	0	NA	19qA	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr19	16383254	16383254	G	A	ENSMUST00000025541.5	1	ENSMUSG00000024639	missense	V/M	314	Gnaq	ENSMUST00000025541.5:c.940G>A	ENSMUSP00000025541.5:p.Val314Met	H-2-Kb	8	6	6	ILKMFMDL	ILKMFVDL	NetMHCpan	249.7	319.7	1.28	226	0.128	388.374	474.546	1.222	1460.9	633.96	319.7	249.7	595.3056439	459.9811133	353.7854762	316.7670499	SSC_p20	0.971428571	1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.131	226	0	0	NA	19qA	chr19-11105367-41721414	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.77247883	sgMsh2	cell line
chr19	4290661	4290661	T	C	ENSMUST00000088737.10	1	ENSMUSG00000024858	missense	M/V	257	Grk2	ENSMUST00000088737.10:c.769A>G	ENSMUSP00000086114.4:p.Met257Val	H-2-Kb	9	11	1	VSYAFHTPD	MSYAFHTPD	SMMPMBEC	46.158	119.468	2.588	231	0.113	51.279	157.215	3.066	193.34	55.34	264.8	139.7	121.0904798	47.21826226	119.4675617	46.15832068	SSC_p20	-0.814285714	0.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.12	231	0	0	NA	19qA	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr19	13861984	13861984	A	G	ENSMUST00000074221.1	NA	ENSMUSG00000056858	missense	S/G	64	Olfr1502	ENSMUST00000074221.1:c.190A>G	ENSMUSP00000073843.1:p.Ser64Gly	H-2-Kb	9	5	7	PMYFFLGHL	PMYFFLSHL	SMM	20.47	13.744	0.671	376	0.199	50.42	27.523	0.546	44.85	72.51	32.8	81.5	13.74390042	20.46963035	22.24590099	28.33022345	SSC_p20	1.185714286	1.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	376	0	0	NA	19qA	chr19-11105367-41721414	7	5	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr19	13705156	13705156	A	G	ENSMUST00000216366.1	5	ENSMUSG00000051156	missense	T/A	110	Olfr1491	ENSMUST00000216366.1:c.328A>G	ENSMUSP00000149071.1:p.Thr110Ala	H-2-Kb	9	4	8	TQMFFFLAL	TQMFFFLTL	NetMHCpan	21.4	17.7	0.827	339	0.215	96.695	109.446	1.132	88.8	72.54	17.7	21.4	134.9304597	127.0895963	130.0918231	120.8509309	SSC_p20	2.814285714	2.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.212	339	0	0	NA	19qA	chr19-11105367-41721414	7	5	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr19	31920923	31920923	A	G	ENSMUST00000075838.7	1	ENSMUSG00000052595	missense	R/G	236	A1cf	ENSMUST00000075838.7:c.706A>G	ENSMUSP00000075235.5:p.Arg236Gly	H-2-Kb	9	5	7	VKILYVGNL	VKILYVRNL	NetMHC	101.13	84.44	0.835	280	0.139	234.876	305.351	1.3	84.44	101.13	120.8	136.9	489.9028884	391.8411118	501.4758232	332.8511027	SSC_p20	1.585714286	1.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.14	280	0	0	NA	19qC1	chr19-11105367-41721414	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.825549895	sgMsh2	cell line
chr19	37982988	37982988	C	A	ENSMUST00000041475.15	2	ENSMUSG00000048612	missense	R/M	272	Myof	ENSMUST00000041475.15:c.815G>T	ENSMUSP00000045036.8:p.Arg272Met	H-2-Kb	9	3	9	RVYNSHSLM	RVYNSHSLR	NetMHC	104.07	5293.71	50.867	229	0.131	226.354	4944.167	21.843	5293.71	104.07	10734.3	162.9	3259.192408	289.8077532	4594.624246	340.6042008	SSC_p20	-0.557142857	-0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.126	229	0	0	NA	19qC2	chr19-11105367-41721414	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.742994905	sgMsh2	cell line
chr19	6011343	6011343	G	T	ENSMUST00000025891.9	1	ENSMUSG00000024942	missense	Q/K	182	Capn1	ENSMUST00000025891.9:c.544C>A	ENSMUSP00000025891.8:p.Gln182Lys	H-2-Kb	9	11	1	KGNEFWSAL	QGNEFWSAL	NetMHC	118.09	132.59	1.123	80	0.15	359.595	400.861	1.115	132.59	118.09	393.3	165.7	408.4228203	553.4902819	523.901932	571.8077009	SSC_p20	-0.042857143	-0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.143	80	0	0	NA	19qA	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr19	12462428	12462428	TC	T	ENSMUST00000081035.8	1	ENSMUSG00000046805	FS	P/X	417	Mpeg1	ENSMUST00000081035.8:c.1253del	ENSMUSP00000108573.3:p.Pro418LeufsTer78	H-2-Kb	9	80	0	SSLTRPSTL	NA	NetMHC	160.24	NA	NA	270	0.067	258.358	NA	NA	NA	160.24	NA	286.4	NA	254.7475407	NA	261.9690589	SSC_p20	-0.1	-0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.071	270	0	0	NA	19qA	chr19-11105367-41721414	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.418671732	sgMsh2	cell line
chr19	34593964	34593964	C	A	ENSMUST00000168254.2	2	ENSMUSG00000079339	missense	L/F	364	Ifit1bl1	ENSMUST00000168254.2:c.1092G>T	ENSMUSP00000132781.1:p.Leu364Phe	H-2-Kb	9	6	6	DNFQKFLNM	DNFQKLLNM	NetMHC	182.92	895.64	4.896	847	0.08	215.428	722.116	3.352	895.64	182.92	1197.1	277.9	437.6329367	196.8384788	548.5926694	234.0183969	SSC_p20	0.057142857	0.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.08	847	0	0	NA	19qC1	chr19-11105367-41721414	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.471742797	sgMsh2	cell line
chr19	13454083	13454083	A	G	ENSMUST00000096201.3	5	ENSMUSG00000095189	missense	C/R	145	Olfr1472	ENSMUST00000096201.3:c.433T>C	ENSMUSP00000093915.3:p.Cys145Arg	H-2-Kb	9	9	3	VTRCYMCGI	VTCCYMCGI	NetMHC	188.33	441.89	2.346	504	0.151	299.238	609.711	2.038	441.89	188.33	758.9	198.3	783.6280984	422.7756832	460.5215948	400.1750427	SSC_p20	0.742857143	0.742857143	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.154	504	0	0	NA	19qA	chr19-11105367-41721414	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.908104884	sgMsh2	cell line
chr19	34495079	34495079	T	A	ENSMUST00000049572.14	1	ENSMUSG00000024781	missense	N/I	314	Lipa	ENSMUST00000049572.14:c.941A>T	ENSMUSP00000053270.8:p.Asn314Ile	H-2-Kb	9	11	1	IYFHYNQSF	NYFHYNQSF	SMMPMBEC	178.752	1092.069	6.109	83	0.157	214.115	1375.179	6.423	1567	205.33	1496.9	262.3	1253.458616	222.8999649	1092.068801	178.7516256	SSC_p20	-0.957142857	-0.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.155	83	0	0	NA	19qC1	chr19-11105367-41721414	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.914001669	sgMsh2	cell line
chr19	16383254	16383254	G	A	ENSMUST00000025541.5	1	ENSMUSG00000024639	missense	V/M	314	Gnaq	ENSMUST00000025541.5:c.940G>A	ENSMUSP00000025541.5:p.Val314Met	H-2-Kb	9	5	7	FILKMFMDL	FILKMFVDL	NetMHC	268.8	623.27	2.319	226	0.128	358.268	502.216	1.402	623.27	268.8	645.4	411.6	381.1623536	362.3347605	317.8703353	354.201177	SSC_p20	0.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.131	226	0	0	NA	19qA	chr19-11105367-41721414	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.77247883	sgMsh2	cell line
chr19	12462428	12462428	TC	T	ENSMUST00000081035.8	1	ENSMUSG00000046805	FS	P/X	417	Mpeg1	ENSMUST00000081035.8:c.1253del	ENSMUSP00000108573.3:p.Pro418LeufsTer78	H-2-Kb	9	4	9	LTGDFSCPL	LTGDFSCPP	NetMHC	296.88	15046.84	50.683	270	0.067	430.046	9230.367	21.464	15046.84	296.88	21955	669.3	1828.563304	396.378418	3413.893746	463.713778	SSC_p20	0.4	0.528571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.071	270	0	0	NA	19qA	chr19-11105367-41721414	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.418671732	sgMsh2	cell line
chr19	50225226	50225226	TC	T	ENSMUST00000209413.1	1	ENSMUSG00000043531	FS	E/X	688	Sorcs1	ENSMUST00000209413.1:c.2062del	ENSMUSP00000147463.1:p.Glu688LysfsTer94	H-2-Kb	9	43	0	LVFVQRQTL	NA	NetMHCpan	308.9	NA	NA	87	0.149	379.9	NA	NA	NA	366.15	NA	308.9	NA	393.6497682	NA	504.9518876	SSC_p20	-0.2	0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.156	87	0	0	NA	19qD1	chr19-41726766-61227351	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.919898454	sgMsh2	cell line
chr19	50225226	50225226	TC	T	ENSMUST00000209413.1	1	ENSMUSG00000043531	FS	E/X	688	Sorcs1	ENSMUST00000209413.1:c.2062del	ENSMUSP00000147463.1:p.Glu688LysfsTer94	H-2-Kb	9	18	0	RGYTRRESL	NA	NetMHCpan	291.2	NA	NA	87	0.149	430.122	NA	NA	NA	387.91	NA	291.2	NA	618.1729539	NA	472.3348608	SSC_p20	-1.642857143	-1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.156	87	0	0	NA	19qD1	chr19-41726766-61227351	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.919898454	sgMsh2	cell line
chr19	34495079	34495079	T	A	ENSMUST00000049572.14	1	ENSMUSG00000024781	missense	N/I	314	Lipa	ENSMUST00000049572.14:c.941A>T	ENSMUSP00000053270.8:p.Asn314Ile	H-2-Kb	9	10	2	KIYFHYNQS	KNYFHYNQS	SMM	64.88	48.99	0.755	83	0.157	249.819	160.276	0.642	266.32	412.09	254.9	592.1	48.99028884	64.87987433	65.65230826	87.54876014	SSC_p20	-1.542857143	-0.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.155	83	0	0	NA	19qC1	chr19-11105367-41721414	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.914001669	sgMsh2	cell line
chr19	50225226	50225226	TC	T	ENSMUST00000209413.1	1	ENSMUSG00000043531	FS	E/X	688	Sorcs1	ENSMUST00000209413.1:c.2062del	ENSMUSP00000147463.1:p.Glu688LysfsTer94	H-2-Kb	9	90	0	LGIGRWSPI	NA	NetMHCpan	259.7	NA	NA	87	0.149	359.44	NA	NA	NA	431.5	NA	259.7	NA	429.6452354	NA	289.2344371	SSC_p20	0.114285714	0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.156	87	0	0	NA	19qD1	chr19-41726766-61227351	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.919898454	sgMsh2	cell line
chr19	34620037	34620037	T	C	ENSMUST00000087357.4	1	ENSMUSG00000067297	missense	I/V	60	Ifit1bl2	ENSMUST00000087357.4:c.178A>G	ENSMUSP00000093816.2:p.Ile60Val	H-2-Kb	9	9	3	YSVGMHNLL	YSIGMHNLL	SMM	380.286	260.082	0.684	278	0.165	455.117	282.173	0.62	226.52	468.41	459.6	891.9	260.0818226	380.2857045	304.2636004	441.8247089	SSC_p20	0.942857143	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.17	278	0	0	NA	19qC1	chr19-11105367-41721414	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr18	80971684	80971684	CT	C	ENSMUST00000238808.1	NA	ENSMUSG00000024565	FS	S/X	1010	Sall3	ENSMUST00000238808.1:c.3028del	ENSMUSP00000158909.1:p.Ser1010ValfsTer31	H-2-Kb	9	18	0	AAIPRRGRL	NA	SMMPMBEC	325.274	NA	NA	31	0.29	475.802	NA	NA	NA	540.35	NA	758	NA	411.2538721	NA	325.2744865	SSC_p20	-1.028571429	-0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2903	31	0	0	NA	18qE3	chr18-5046666-88869177	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr19	13705156	13705156	A	G	ENSMUST00000216366.1	5	ENSMUSG00000051156	missense	T/A	110	Olfr1491	ENSMUST00000216366.1:c.328A>G	ENSMUSP00000149071.1:p.Thr110Ala	H-2-Kb	9	5	7	QMFFFLALG	QMFFFLTLG	SMM	107.922	144.248	1.337	339	0.215	440.66	649.506	1.474	1099.37	734.68	1443.9	1219.9	144.2480663	107.9220037	199.6411211	146.6391721	SSC_p20	2.485714286	2.814285714	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.212	339	0	0	NA	19qA	chr19-11105367-41721414	7	5	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr19	34495079	34495079	T	A	ENSMUST00000049572.14	1	ENSMUSG00000024781	missense	N/I	314	Lipa	ENSMUST00000049572.14:c.941A>T	ENSMUSP00000053270.8:p.Asn314Ile	H-2-Kb	10	10	2	KIYFHYNQSF	KNYFHYNQSF	NetMHCpan	234.5	117.4	0.501	83	0.157	484.311	421.142	0.87	191.66	238.61	117.4	234.5	650.6238811	730.0120014	674.3106206	763.5895917	SSC_p20	-0.957142857	-0.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.155	83	0	0	NA	19qC1	chr19-11105367-41721414	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.914001669	sgMsh2	cell line
chr2	37414545	37414545	A	G	ENSMUST00000100143.9	5	ENSMUSG00000075376	missense	F/L	68	Rc3h2	ENSMUST00000100143.9:c.202T>C	ENSMUSP00000097721.3:p.Phe68Leu	H-2-Db	9	6	6	VLPVNLALL	VLPVNFALL	NetMHC	230.93	262.08	1.135	59	0.39	339.568	366.605	1.08	262.08	230.93	678	978.4	358.6080216	326.3021986	374.6019209	352.8336521	SSC_p20	1.757142857	1.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.391	59	0	0	NA	2qB	chr2-33014884-80658668	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr2	25231426	25231426	TC	T	ENSMUST00000006638.7	1	ENSMUSG00000006469	FS	E/X	280	Slc34a3	ENSMUST00000006638.7:c.838del	ENSMUSP00000006638.7:p.Glu280ArgfsTer73	H-2-Db	9	73	0	SSSLNCSTL	NA	SMM	98.542	NA	NA	135	0.237	132.322	NA	NA	NA	406.43	NA	147	NA	98.54168859	NA	117.6440589	SSC_p20	0.614285714	0.614285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.234	135	0	0	NA	2qA3	chr2-24280505-33011764	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr2	73435092	73435092	AG	A	ENSMUST00000094681.10	1	ENSMUSG00000075284	FS	P/X	389	Wipf1	ENSMUST00000094681.10:c.1166del	ENSMUSP00000092268.4:p.Pro389LeufsTer165	H-2-Db	9	132	0	LLFENCTPL	NA	NetMHCpan	198.5	NA	NA	71	0.169	207.869	NA	NA	NA	461.35	NA	198.5	NA	214.101643	NA	201.6368945	SSC_p20	-0.028571429	0.742857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.185	71	0	0	NA	2qC3	chr2-33014884-80658668	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr2	32096059	32096059	A	G	ENSMUST00000057423.5	1	ENSMUSG00000051373	missense	N/S	83	Plpp7	ENSMUST00000057423.5:c.248A>G	ENSMUSP00000054337.5:p.Asn83Ser	H-2-Kb	8	6	6	KGIAFSSL	KGIAFNSL	NetMHC	17.64	43.84	2.485	56	0.25	39.051	71.041	1.819	43.84	17.64	52.6	22.8	89.4828896	55.30189331	96.10367602	55.68522772	SSC_p20	1.557142857	1.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	56	0	0	NA	2qB	chr2-24280505-33011764	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr2	25493787	25493787	T	C	ENSMUST00000028312.12	1	ENSMUSG00000026943	missense	M/V	24	Lcn12	ENSMUST00000028312.12:c.70A>G	ENSMUSP00000028312.6:p.Met24Val	H-2-Kb	8	11	1	VSQGFPQM	MSQGFPQM	NetMHC	67.96	316.47	4.657	107	0.28	107.588	290.453	2.7	316.47	67.96	277	90.8	265.3016799	124.3769779	303.9065077	143.4630303	SSC_p20	-0.728571429	-0.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.297	107	0	0	NA	2qA3	chr2-24280505-33011764	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr2	26950091	26950091	C	T	ENSMUST00000055406.8	1	ENSMUSG00000049897	missense	T/I	391	Stkld1	ENSMUST00000055406.8:c.1172C>T	ENSMUSP00000062967.8:p.Thr391Ile	H-2-Kb	8	5	7	ISFLMDIL	ISFLMDTL	NetMHCpan	63.7	32.2	0.505	87	0.276	73.561	31.721	0.431	25.59	75.55	32.2	63.7	31.24208431	71.57148034	33.39950266	87.24489012	SSC_p20	1.785714286	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.286	87	0	0	NA	2qA3	chr2-24280505-33011764	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr2	25231426	25231426	TC	T	ENSMUST00000006638.7	1	ENSMUSG00000006469	FS	E/X	280	Slc34a3	ENSMUST00000006638.7:c.838del	ENSMUSP00000006638.7:p.Glu280ArgfsTer73	H-2-Kb	8	69	0	VSVWSSSL	NA	NetMHC	87.54	NA	NA	135	0.237	128.516	NA	NA	NA	87.54	NA	102.6	NA	154.4329616	NA	190.4320313	SSC_p20	0.557142857	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.234	135	0	0	NA	2qA3	chr2-24280505-33011764	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr19	60543015	60543015	A	G	ENSMUST00000081790.14	1	ENSMUSG00000033417	missense	L/P	272	Cacul1	ENSMUST00000081790.14:c.815T>C	ENSMUSP00000080480.7:p.Leu272Pro	H-2-Kb	8	7	5	HIYSPMPL	HIYSLMPL	NetMHC	102.16	23.14	0.227	177	0.158	175.742	65.577	0.373	23.14	102.16	67.5	269.1	66.02980276	166.241711	65.12383991	185.2422298	SSC_p20	0.7	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.157	177	0	0	NA	19qD3	chr19-41726766-61227351	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.925795239	sgMsh2	cell line
chr2	37414545	37414545	A	G	ENSMUST00000100143.9	5	ENSMUSG00000075376	missense	F/L	68	Rc3h2	ENSMUST00000100143.9:c.202T>C	ENSMUSP00000097721.3:p.Phe68Leu	H-2-Kb	8	9	3	VNLALLQL	VNFALLQL	NetMHCpan	83.1	13	0.156	59	0.39	124.295	28.013	0.225	27.86	130.9	13	83.1	28.16696149	117.6901185	33.47649647	144.7904774	SSC_p20	1.428571429	1.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.391	59	0	0	NA	2qB	chr2-33014884-80658668	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr2	25201148	25201148	G	T	ENSMUST00000059849.14	1	ENSMUSG00000013465	missense	L/I	513	Nelfb	ENSMUST00000059849.14:c.1537C>A	ENSMUSP00000057731.9:p.Leu513Ile	H-2-Kb	8	6	6	FSDIFIHL	FSDIFLHL	SMMPMBEC	83.703	98.342	1.175	91	0.297	118.181	155.988	1.32	213.18	151.3	287.7	340.7	98.79614526	85.06286381	98.3422182	83.70280268	SSC_p20	1.157142857	1.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.3	91	0	0	NA	2qA3	chr2-24280505-33011764	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr2	69483430	69483430	T	G	ENSMUST00000080953.11	5	ENSMUSG00000027070	missense	D/A	2319	Lrp2	ENSMUST00000080953.11:c.6956A>C	ENSMUSP00000079752.5:p.Asp2319Ala	H-2-Kb	8	8	4	VIRASINL	VIRDSINL	SMM	119.602	228.423	1.91	207	0.208	180.124	445.451	2.473	510.94	164.03	570.2	387.5	228.4230889	119.6024291	379.9618556	196.218522	SSC_p20	0.828571429	0.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.208	207	0	0	NA	2qC2	chr2-33014884-80658668	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr2	25231426	25231426	TC	T	ENSMUST00000006638.7	1	ENSMUSG00000006469	FS	E/X	280	Slc34a3	ENSMUST00000006638.7:c.838del	ENSMUSP00000006638.7:p.Glu280ArgfsTer73	H-2-Kb	8	74	0	SSLNCSTL	NA	SMM	136.691	NA	NA	135	0.237	155.994	NA	NA	NA	166.53	NA	309.3	NA	136.691025	NA	145.4587999	SSC_p20	0.614285714	0.614285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.234	135	0	0	NA	2qA3	chr2-24280505-33011764	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr2	37202003	37202003	A	AT	ENSMUST00000218602.1	5	ENSMUSG00000059429	FS	Y/YX	254	Olfr365	ENSMUST00000218602.1:c.762dup	ENSMUSP00000151617.1:p.Gly255TrpfsTer9	H-2-Kb	8	9	4	LFYWEYHL	NA	SMMPMBEC	158.03	NA	NA	275	0.262	180.961	NA	NA	NA	188.31	NA	178.8	NA	183.1217795	NA	158.0301673	SSC_p20	-0.514285714	-0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.263	275	0	0	NA	2qB	chr2-33014884-80658668	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr2	37085433	37085433	A	C	ENSMUST00000214969.1	5	ENSMUSG00000075378	missense	M/R	105	Olfr361	ENSMUST00000214969.1:c.314T>G	ENSMUSP00000149234.1:p.Met105Arg	H-2-Kb	8	6	6	QLFSFRTV	QLFSFMTV	NetMHCpan	96.8	97.9	1.011	290	0.262	221.142	175.096	0.792	158.88	206.92	97.9	96.8	191.3110256	235.3639803	246.456343	278.4453695	SSC_p20	1.085714286	1.085714286	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.263	290	0	0	NA	2qB	chr2-33014884-80658668	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr2	32578965	32578965	GA	G	ENSMUST00000055304.13	1	ENSMUSG00000046854	FS	K/X	199	Pip5kl1	ENSMUST00000055304.13:c.599del	ENSMUSP00000051282.7:p.Lys200ArgfsTer28	H-2-Kb	8	22	0	STLPAAFL	NA	SMM	136.063	NA	NA	281	0.274	225.072	NA	NA	NA	247.03	NA	312.7	NA	136.0629867	NA	203.114066	SSC_p20	1.671428571	1.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.269	281	0	0	NA	2qB	chr2-24280505-33011764	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr2	37540510	37540510	T	C	ENSMUST00000061179.11	1	ENSMUSG00000035437	missense	C/R	688	Rabgap1	ENSMUST00000061179.11:c.2062T>C	ENSMUSP00000061624.5:p.Cys688Arg	H-2-Kb	8	9	3	LHRKFYQL	LHCKFYQL	SMM	224.254	264.083	1.178	74	0.23	251.664	429.191	1.705	627.66	277.52	594.3	344.8	264.0827294	224.2538976	211.2224132	225.8083514	SSC_p20	-1.4	-1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.24	74	0	0	NA	2qB	chr2-33014884-80658668	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr2	26935351	26935351	A	G	ENSMUST00000055406.8	1	ENSMUSG00000049897	missense	N/S	10	Stkld1	ENSMUST00000055406.8:c.29A>G	ENSMUSP00000062967.8:p.Asn10Ser	H-2-Kb	8	9	2	VSLVVEEL	VNLVVEEL	NetMHC	298.06	827.1	2.775	91	0.253	351.98	706.185	2.006	827.1	298.06	634.8	446.5	611.9839043	330.9329418	777.5709016	373.0267702	SSC_p20	1.171428571	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.241	91	0	0	NA	2qA3	chr2-24280505-33011764	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr2	31912023	31912023	A	T	ENSMUST00000028187.6	1	ENSMUSG00000026840	missense	H/L	481	Lamc3	ENSMUST00000028187.6:c.1442A>T	ENSMUSP00000028187.6:p.His481Leu	H-2-Kb	8	4	8	GTFNLQPL	GTFNLQPH	SMMPMBEC	183.544	7938.528	43.251	107	0.187	232.877	24312.774	104.402	31024.73	345.98	21664.3	241.5	26961.24854	224.2538976	7938.528349	183.5439188	SSC_p20	0.157142857	0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.196	107	0	0	NA	2qB	chr2-24280505-33011764	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr2	26983866	26983866	T	A	ENSMUST00000102891.3	1	ENSMUSG00000014852	missense	C/S	376	Adamts13	ENSMUST00000102891.3:c.1126T>A	ENSMUSP00000099955.3:p.Cys376Ser	H-2-Kb	8	10	2	RSRSLAEL	RCRSLAEL	SMM	299.737	3554.185	11.858	113	0.212	354.78	5801.142	16.351	11155.42	377.1	8048.1	1335.6	3554.184757	299.7367541	2810.217928	332.4604589	SSC_p20	-0.028571429	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.22	113	0	0	NA	2qA3	chr2-24280505-33011764	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr2	73435092	73435092	AG	A	ENSMUST00000094681.10	1	ENSMUSG00000075284	FS	P/X	389	Wipf1	ENSMUST00000094681.10:c.1166del	ENSMUSP00000092268.4:p.Pro389LeufsTer165	H-2-Kb	8	69	0	IRFLTCRL	NA	SMMPMBEC	191.752	NA	NA	71	0.169	310.114	NA	NA	NA	389.16	NA	552.5	NA	231.0681036	NA	191.7520431	SSC_p20	0.457142857	0.557142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.185	71	0	0	NA	2qC3	chr2-33014884-80658668	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr2	73435092	73435092	AG	A	ENSMUST00000094681.10	1	ENSMUSG00000075284	FS	P/X	389	Wipf1	ENSMUST00000094681.10:c.1166del	ENSMUSP00000092268.4:p.Pro389LeufsTer165	H-2-Kb	8	28	0	LLFLLTGL	NA	NetMHCpan	209	NA	NA	71	0.169	299.073	NA	NA	NA	416.62	NA	209	NA	346.5293309	NA	251.6170116	SSC_p20	2.414285714	2.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.185	71	0	0	NA	2qC3	chr2-33014884-80658668	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr2	83007483	83007483	A	G	ENSMUST00000143764.8	5	ENSMUSG00000075249	missense	I/V	6931	Fsip2	ENSMUST00000143764.8:c.20791A>G	ENSMUSP00000120314.2:p.Ile6931Val	H-2-Kb	8	4	8	NSLEFVTV	NSLEFVTI	NetMHCpan	303.2	273.9	0.903	190	0.179	339.714	575.96	1.695	948.48	547.87	273.9	303.2	591.2075887	325.64169	560.7121928	353.7854762	SSC_p20	1.428571429	1.428571429	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.179	190	0	0	NA	2qD	chr2-80837583-88897861	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr2	73435092	73435092	AG	A	ENSMUST00000094681.10	1	ENSMUSG00000075284	FS	P/X	389	Wipf1	ENSMUST00000094681.10:c.1166del	ENSMUSP00000092268.4:p.Pro389LeufsTer165	H-2-Kb	8	67	0	TSIRFLTC	NA	SMM	294.944	NA	NA	71	0.169	359.484	NA	NA	NA	963.31	NA	402.2	NA	294.9442949	NA	316.7670499	SSC_p20	1.085714286	1.085714286	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.185	71	0	0	NA	2qC3	chr2-33014884-80658668	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr2	25059023	25059023	A	G	ENSMUST00000100334.10	1	ENSMUSG00000006476	missense	N/S	263	Nsmf	ENSMUST00000100334.10:c.788A>G	ENSMUSP00000097908.4:p.Asn263Ser	H-2-Kb	9	10	2	RSFRKHLRM	RNFRKHLRM	NetMHC	36.65	57.39	1.566	68	0.294	110.576	128.057	1.158	57.39	36.65	43	42.4	220.3484501	207.066575	198.7238535	178.7516256	SSC_p20	-1.085714286	-1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.262	68	0	0	NA	2qA3	chr2-24280505-33011764	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr2	32096059	32096059	A	G	ENSMUST00000057423.5	1	ENSMUSG00000051373	missense	N/S	83	Plpp7	ENSMUST00000057423.5:c.248A>G	ENSMUSP00000054337.5:p.Asn83Ser	H-2-Kb	9	6	6	KGIAFSSLL	KGIAFNSLL	NetMHC	49.45	147.45	2.982	56	0.25	240.453	466.442	1.94	147.45	49.45	132	55.2	785.4345477	425.7062242	802.1396792	611.2938126	SSC_p20	2.157142857	2.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	56	0	0	NA	2qB	chr2-24280505-33011764	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr2	37202003	37202003	A	AT	ENSMUST00000218602.1	5	ENSMUSG00000059429	FS	Y/YX	254	Olfr365	ENSMUST00000218602.1:c.762dup	ENSMUSP00000151617.1:p.Gly255TrpfsTer9	H-2-Kb	9	8	5	VLFYWEYHL	NA	NetMHCpan	45.2	NA	NA	275	0.262	95.931	NA	NA	NA	82.69	NA	45.2	NA	109.1716816	NA	130.6922997	SSC_p20	-0.514285714	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.263	275	0	0	NA	2qB	chr2-33014884-80658668	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr2	86160070	86160070	T	C	ENSMUST00000215624.1	NA	ENSMUSG00000075202	missense	Q/R	100	Olfr1042	ENSMUST00000215624.1:c.299A>G	ENSMUSP00000151053.1:p.Gln100Arg	H-2-Kb	9	4	8	TFYACATRL	TFYACATQL	NetMHC	130.05	202.58	1.558	313	0.192	226.469	285.13	1.259	202.58	130.05	232	133.6	430.63567	330.4532291	338.259498	319.3375581	SSC_p20	0.485714286	0.885714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.195	313	0	0	NA	2qD	chr2-80837583-88897861	7	5	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr2	32096059	32096059	A	G	ENSMUST00000057423.5	1	ENSMUSG00000051373	missense	N/S	83	Plpp7	ENSMUST00000057423.5:c.248A>G	ENSMUSP00000054337.5:p.Asn83Ser	H-2-Kb	9	8	4	IAFSSLLAI	IAFNSLLAI	NetMHCpan	126.5	133.2	1.053	56	0.25	230.074	260.76	1.133	180.13	192.78	133.2	126.5	380.2857045	267.3683525	341.3893746	329.0409876	SSC_p20	2.157142857	2.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	56	0	0	NA	2qB	chr2-24280505-33011764	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr2	61806339	61806339	TA	T	ENSMUST00000102737.4	2	ENSMUSG00000035033	FS	K/X	8	Tbr1	ENSMUST00000102737.4:c.31del	ENSMUSP00000099798.4:p.Ser11AlafsTer36	H-2-Kb	9	5	7	RGFKKKAQL	RGFKKKSPA	NetMHC	203.62	4296.19	21.099	52	0.25	381.031	3670.68	9.634	4296.19	203.62	3485.6	329.3	3855.760057	648.7987433	3127.879401	432.7628777	SSC_p20	-0.971428571	-0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.25	52	0	0	NA	2qC1.3	chr2-33014884-80658668	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr2	37085433	37085433	A	C	ENSMUST00000214969.1	5	ENSMUSG00000075378	missense	M/R	105	Olfr361	ENSMUST00000214969.1:c.314T>G	ENSMUSP00000149234.1:p.Met105Arg	H-2-Kb	9	8	4	FSFRTVGSM	FSFMTVGSM	NetMHC	223	207.93	0.932	290	0.262	464.706	385.207	0.829	207.93	223	201	246.9	562.4837755	682.5115418	563.9622051	740.0311486	SSC_p20	0.357142857	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.263	290	0	0	NA	2qB	chr2-33014884-80658668	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr19	60543015	60543015	A	G	ENSMUST00000081790.14	1	ENSMUSG00000033417	missense	L/P	272	Cacul1	ENSMUST00000081790.14:c.815T>C	ENSMUSP00000080480.7:p.Leu272Pro	H-2-Kb	9	7	5	HIYSPMPLL	HIYSLMPLL	SMM	223.929	166.001	0.741	177	0.158	350.975	195.01	0.556	172.52	267.65	217.5	434.3	166.0007308	223.9288243	260.7654204	445.9128626	SSC_p20	0.6	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.157	177	0	0	NA	19qD3	chr19-41726766-61227351	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.925795239	sgMsh2	cell line
chr2	37414545	37414545	A	G	ENSMUST00000100143.9	5	ENSMUSG00000075376	missense	F/L	68	Rc3h2	ENSMUST00000100143.9:c.202T>C	ENSMUSP00000097721.3:p.Phe68Leu	H-2-Kb	9	9	3	VNLALLQLV	VNFALLQLV	NetMHC	330.6	79.15	0.239	59	0.39	408.521	107.778	0.264	79.15	330.6	84	576.7	131.5558	369.0710667	161.5288124	447.9711029	SSC_p20	2.528571429	2.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.391	59	0	0	NA	2qB	chr2-33014884-80658668	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr2	25231426	25231426	TC	T	ENSMUST00000006638.7	1	ENSMUSG00000006469	FS	E/X	280	Slc34a3	ENSMUST00000006638.7:c.838del	ENSMUSP00000006638.7:p.Glu280ArgfsTer73	H-2-Kb	9	68	0	SVSVWSSSL	NA	NetMHC	356.02	NA	NA	135	0.237	492.703	NA	NA	NA	356.02	NA	447	NA	538.4061351	NA	834.1612282	SSC_p20	0.557142857	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.234	135	0	0	NA	2qA3	chr2-24280505-33011764	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr2	73435092	73435092	AG	A	ENSMUST00000094681.10	1	ENSMUSG00000075284	FS	P/X	389	Wipf1	ENSMUST00000094681.10:c.1166del	ENSMUSP00000092268.4:p.Pro389LeufsTer165	H-2-Kb	9	24	0	VGLGLLFLL	NA	SMM	328.178	NA	NA	71	0.169	477.864	NA	NA	NA	645.5	NA	571.8	NA	328.178405	NA	383.9281887	SSC_p20	3.057142857	3.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.185	71	0	0	NA	2qC3	chr2-33014884-80658668	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr2	37202003	37202003	A	AT	ENSMUST00000218602.1	5	ENSMUSG00000059429	FS	Y/YX	254	Olfr365	ENSMUST00000218602.1:c.762dup	ENSMUSP00000151617.1:p.Gly255TrpfsTer9	H-2-Kb	9	10	3	FYWEYHLCL	NA	SMMPMBEC	298.71	NA	NA	275	0.262	449.646	NA	NA	NA	994.26	NA	502	NA	397.2921646	NA	298.7101638	SSC_p20	0.171428571	0.171428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.263	275	0	0	NA	2qB	chr2-33014884-80658668	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr2	88852771	88852771	A	G	ENSMUST00000213283.1	5	ENSMUSG00000061798	missense	T/A	274	Olfr1204	ENSMUST00000213283.1:c.820A>G	ENSMUSP00000150111.1:p.Thr274Ala	H-2-Db	9	4	8	KAVALFYAM	KAVALFYTM	NetMHC	192.77	84.14	0.436	420	0.012	350.074	212.132	0.606	84.14	192.77	221	441.8	210.6783944	356.1393814	213.5846316	344.0091546	SSC_p20	2.142857143	2.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.015	420	0	0	NA	2qE1	chr2-80837583-88897861	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.088451774	sgMsh2	cell line
chr2	91212313	91212313	T	C	ENSMUST00000028696.4	1	ENSMUSG00000002109	missense	N/D	401	Ddb2	ENSMUST00000028696.4:c.1201A>G	ENSMUSP00000028696.4:p.Asn401Asp	H-2-Db	9	5	7	TSLNEFDPM	TSLNEFNPM	NetMHCpan	311.5	820.6	2.634	284	0.151	424.011	1056.963	2.493	3969.66	1659.2	820.6	311.5	1263.63021	492.7424743	850.2957336	355.2793781	SSC_p20	-0.514285714	-0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.155	284	0	0	NA	2qE1	chr2-88909196-94430128	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.914001669	sgMsh2	cell line
chr2	89977882	89977882	C	T	ENSMUST00000111512.9	2	ENSMUSG00000042894	missense	L/F	35	Olfr1260	ENSMUST00000111512.9:c.103C>T	ENSMUSP00000107137.1:p.Leu35Phe	H-2-Kb	8	7	5	LIYSFTLI	LIYSLTLI	NetMHCpan	11.9	188.2	15.815	283	0.194	32.154	424.803	13.211	291.47	11.98	188.2	11.9	654.2443789	62.04974485	558.1359543	52.32870654	SSC_p20	1.828571429	1.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.196	283	0	0	NA	2qE1	chr2-88909196-94430128	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr2	88852771	88852771	A	G	ENSMUST00000213283.1	5	ENSMUSG00000061798	missense	T/A	274	Olfr1204	ENSMUST00000213283.1:c.820A>G	ENSMUSP00000150111.1:p.Thr274Ala	H-2-Kb	8	6	6	VALFYAMI	VALFYTMI	NetMHCpan	10.5	17.4	1.657	420	0.012	25.002	72.925	2.917	45.68	14.95	17.4	10.5	100.1705365	35.05419514	106.8415057	36.62182643	SSC_p20	2.185714286	2.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.015	420	0	0	NA	2qE1	chr2-80837583-88897861	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.088451774	sgMsh2	cell line
chr2	111780515	111780515	A	G	ENSMUST00000054004.1	NA	ENSMUSG00000044560	missense	N/S	68	Olfr1302	ENSMUST00000054004.1:c.203A>G	ENSMUSP00000061674.1:p.Asn68Ser	H-2-Kb	8	5	7	MYFLLASL	MYFLLANL	NetMHCpan	48.7	29.1	0.598	458	0.011	64.796	27.562	0.425	21.1	65.51	29.1	48.7	27.08569601	66.48749949	28.03754606	64.08258172	SSC_p20	1.985714286	1.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.014	458	0	0	NA	2qE3	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.082554989	sgMsh2	cell line
chr2	111780515	111780515	A	G	ENSMUST00000054004.1	NA	ENSMUSG00000044560	missense	N/S	68	Olfr1302	ENSMUST00000054004.1:c.203A>G	ENSMUSP00000061674.1:p.Asn68Ser	H-2-Kb	8	10	2	ASLSFVDM	ANLSFVDM	NetMHC	70.65	184.82	2.616	458	0.011	136.372	278.066	2.039	184.82	70.65	146.4	89.2	371.3128679	200.7890385	382.5956254	183.5439188	SSC_p20	1.085714286	1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.014	458	0	0	NA	2qE3	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.082554989	sgMsh2	cell line
chr2	89296493	89296493	G	T	ENSMUST00000099787.1	NA	ENSMUSG00000075094	missense	P/H	259	Olfr1230	ENSMUST00000099787.1:c.776C>A	ENSMUSP00000097375.1:p.Pro259His	H-2-Kb	8	5	7	IILYMRHV	IILYMRPV	NetMHC	110.45	93.66	0.848	197	0.193	275.635	190.876	0.692	93.66	110.45	196.7	268.3	189.5570756	290.8975074	192.1940772	282.9697428	SSC_p20	0.771428571	0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.192	197	0	0	NA	2qE1	chr2-88909196-94430128	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr2	127435035	127435035	T	C	ENSMUST00000062211.3	5	ENSMUSG00000046338	missense	F/S	692	Gpat2	ENSMUST00000062211.3:c.2075T>C	ENSMUSP00000049619.3:p.Phe692Ser	H-2-Kb	8	11	1	SFLFLCRL	FFLFLCRL	NetMHCpan	62.1	806.4	12.986	98	0.031	125.136	434.471	3.472	549.98	112.95	806.4	62.1	248.7367755	137.3219621	318.9627742	184.391119	SSC_p20	2.142857143	2.142857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.042	98	0	0	NA	2qF1	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.247664968	sgMsh2	cell line
chr2	88852771	88852771	A	G	ENSMUST00000213283.1	5	ENSMUSG00000061798	missense	T/A	274	Olfr1204	ENSMUST00000213283.1:c.820A>G	ENSMUSP00000150111.1:p.Thr274Ala	H-2-Kb	8	5	7	AVALFYAM	AVALFYTM	NetMHCpan	76.7	66.5	0.867	420	0.012	210.383	448.118	2.13	397.65	121.03	66.5	76.7	498.5859086	299.7367541	587.1377443	373.0267702	SSC_p20	2.142857143	2.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.015	420	0	0	NA	2qE1	chr2-80837583-88897861	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.088451774	sgMsh2	cell line
chr2	91480474	91480474	A	G	ENSMUST00000028689.3	1	ENSMUSG00000027253	missense	H/R	620	Lrp4	ENSMUST00000028689.3:c.1859A>G	ENSMUSP00000028689.3:p.His620Arg	H-2-Kb	8	11	1	RVIERANL	HVIERANL	NetMHCpan	173.1	960.6	5.549	90	0.133	250.512	917.53	3.663	984.16	192.18	960.6	173.1	874.4601036	330.1718172	660.2980276	308.8445912	SSC_p20	0.4	0.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.147	90	0	0	NA	2qE1	chr2-88909196-94430128	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.866827389	sgMsh2	cell line
chr2	87093226	87093226	G	A	ENSMUST00000214636.1	5	ENSMUSG00000075161	missense	T/I	57	Olfr1109	ENSMUST00000214636.1:c.170C>T	ENSMUSP00000150159.1:p.Thr57Ile	H-2-Kb	8	10	2	HIPMYFFL	HTPMYFFL	SMMPMBEC	166.242	159.492	0.959	309	0.026	195.615	176.956	0.905	197.23	196.81	117.9	265.4	194.4195797	194.4195797	159.4924025	166.241711	SSC_p20	1.842857143	1.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.027	309	0	0	NA	2qD	chr2-80837583-88897861	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.159213194	sgMsh2	cell line
chr2	88034611	88034611	T	C	ENSMUST00000129056.2	2	ENSMUSG00000075140	missense	N/S	176	Olfr73	ENSMUST00000129056.2:c.527A>G	ENSMUSP00000149472.1:p.Asn176Ser	H-2-Kb	8	10	2	ISHFFCEF	INHFFCEF	NetMHCpan	49.3	91.5	1.856	193	0.155	240.521	452.759	1.882	314.31	197.42	91.5	49.3	699.4231455	378.2160895	591.2075887	283.6220554	SSC_p20	0.485714286	0.728571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.152	193	0	0	NA	2qD	chr2-80837583-88897861	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.896311314	sgMsh2	cell line
chr2	119139420	119139420	GT	G	ENSMUST00000094695.11	1	ENSMUSG00000070730	FS	T/X	387	Rmdn3	ENSMUST00000094695.11:c.1159del	ENSMUSP00000092283.5:p.Thr387ArgfsTer46	H-2-Kb	8	37	0	YSQDFQKL	NA	SMM	227.898	NA	NA	127	0.205	263.57	NA	NA	NA	233.55	NA	302.9	NA	227.8977303	NA	293.5891489	SSC_p20	-1.228571429	-1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2047	127	0	0	NA	2qE5	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr2	88101738	88101738	A	C	ENSMUST00000117860.1	NA	ENSMUSG00000046590	missense	L/R	83	Olfr1165-ps	ENSMUST00000117860.1:c.248T>G	ENSMUSP00000149054.1:p.Leu83Arg	H-2-Kb	8	5	7	SVFTPKRL	SVFTPKLL	SMMPMBEC	174.88	413.752	2.366	358	0.176	193.199	403.987	2.091	456.57	249.7	309.9	209.9	394.2212222	176.4980859	413.7518989	174.8799418	SSC_p20	0.014285714	0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.181	358	0	0	NA	2qD	chr2-80837583-88897861	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr2	88794555	88794555	T	C	ENSMUST00000216213.1	5	ENSMUSG00000059023	missense	Y/H	58	Olfr1201	ENSMUST00000216213.1:c.172T>C	ENSMUSP00000150454.1:p.Tyr58His	H-2-Kb	8	10	2	MHFFLFYL	MYFFLFYL	SMM	74.087	119.327	1.611	388	0.149	100.741	203.67	2.022	318.98	257.59	277.4	112	119.3273511	74.08665723	129.9391436	89.4828896	SSC_p20	1.642857143	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.149	388	0	0	NA	2qE1	chr2-80837583-88897861	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.878620959	sgMsh2	cell line
chr2	87645748	87645748	A	G	ENSMUST00000217368.1	5	ENSMUSG00000075155	missense	V/A	125	Olfr1133	ENSMUST00000217368.1:c.374T>C	ENSMUSP00000149460.1:p.Val125Ala	H-2-Kb	8	5	7	MAYDHYAA	MAYDHYVA	NetMHCpan	290	512.6	1.768	435	0.193	403.45	1335.053	3.309	1688.98	303.7	512.6	290	1185.059074	503.1992672	1485.04632	660.2980276	SSC_p20	-0.557142857	-0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.194	435	0	0	NA	2qD	chr2-80837583-88897861	7	5	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr2	89023344	89023344	T	C	ENSMUST00000216592.1	5	ENSMUSG00000101391	missense	I/V	220	Olfr1217	ENSMUST00000216592.1:c.658A>G	ENSMUSP00000149931.1:p.Ile220Val	H-2-Kb	8	6	6	VSYGVVLF	VSYGVILF	NetMHCpan	220.7	273.2	1.238	614	0.156	446.273	507.885	1.138	386.64	350.87	273.2	220.7	648.2462304	593.9364789	629.1294278	541.6765067	SSC_p20	1.785714286	1.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.159	614	0	0	NA	2qE1	chr2-88909196-94430128	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.937588809	sgMsh2	cell line
chr2	128685915	128685915	T	C	ENSMUST00000014499.9	1	ENSMUSG00000014355	missense	Q/R	41	Anapc1	ENSMUST00000014499.9:c.122A>G	ENSMUSP00000014499.3:p.Gln41Arg	H-2-Kb	8	5	7	LNLQLRRL	LNLQLRQL	SMM	216.641	373.887	1.726	164	0.317	275.027	456.143	1.659	735.41	356.54	538.4	330.4	373.8866857	216.6406749	356.2377999	219.6544469	SSC_p20	-0.657142857	-0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.303	164	0	0	NA	2qF1	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr2	88767458	88767458	T	A	ENSMUST00000217588.2	5	ENSMUSG00000075115	missense	T/S	286	Olfr1200	ENSMUST00000217588.2:c.856A>T	ENSMUSP00000149757.1:p.Thr286Ser	H-2-Kb	8	8	4	VIYSLRNS	VIYTLRNS	SMM	80.675	74.945	0.929	405	0.151	290.039	253.26	0.873	376.58	439.88	1232.4	1339.4	74.94454029	80.67519058	129.9391436	140.197413	SSC_p20	-0.371428571	0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.15	405	0	0	NA	2qE1	chr2-80837583-88897861	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.884517744	sgMsh2	cell line
chr2	87457486	87457486	T	C	ENSMUST00000213366.2	3	ENSMUSG00000058194	missense	M/T	107	Olfr1126	ENSMUST00000213366.2:c.320T>C	ENSMUSP00000150504.1:p.Met107Thr	H-2-Kb	8	10	2	QTCFFLML	QMCFFLML	SMM	150.224	272.734	1.816	474	0.112	245.617	323.519	1.317	691.02	705.64	290.8	293.2	272.7344509	150.2242346	356.2377999	198.0341096	SSC_p20	2.414285714	2.414285714	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.113	474	0	0	NA	2qD	chr2-80837583-88897861	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.666336701	sgMsh2	cell line
chr2	87645748	87645748	A	G	ENSMUST00000217368.1	5	ENSMUSG00000075155	missense	V/A	125	Olfr1133	ENSMUST00000217368.1:c.374T>C	ENSMUSP00000149460.1:p.Val125Ala	H-2-Kb	9	5	7	MAYDHYAAI	MAYDHYVAI	NetMHCpan	7.2	10.8	1.5	435	0.193	17.169	29.47	1.716	22.19	7.22	10.8	7.2	40.65462879	28.19096874	36.74937861	27.11752193	SSC_p20	-0.171428571	-0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.194	435	0	0	NA	2qD	chr2-80837583-88897861	7	5	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr2	112042552	112042552	A	G	ENSMUST00000213961.2	5	ENSMUSG00000074947	missense	V/A	160	Olfr1312	ENSMUST00000213961.2:c.479T>C	ENSMUSP00000150415.1:p.Val160Ala	H-2-Kb	9	6	6	VQLAFAVNL	VQLAFVVNL	NetMHC	26.8	25.64	0.957	418	0.263	182.136	162.886	0.894	25.64	26.8	29.8	26.9	313.4079437	337.3727491	295.9715726	382.1641989	SSC_p20	2.1	2.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.268	418	0	0	NA	2qE3	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr2	88852771	88852771	A	G	ENSMUST00000213283.1	5	ENSMUSG00000061798	missense	T/A	274	Olfr1204	ENSMUST00000213283.1:c.820A>G	ENSMUSP00000150111.1:p.Thr274Ala	H-2-Kb	9	5	7	AVALFYAMI	AVALFYTMI	NetMHC	37.76	95.32	2.524	420	0.012	86.073	121.805	1.415	95.32	37.76	91.1	61.2	148.2893631	110.9455787	174.6827418	128.3068964	SSC_p20	2.185714286	2.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.015	420	0	0	NA	2qE1	chr2-80837583-88897861	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.088451774	sgMsh2	cell line
chr2	127435035	127435035	T	C	ENSMUST00000062211.3	5	ENSMUSG00000046338	missense	F/S	692	Gpat2	ENSMUST00000062211.3:c.2075T>C	ENSMUSP00000049619.3:p.Phe692Ser	H-2-Kb	9	10	2	DSFLFLCRL	DFFLFLCRL	NetMHCpan	42.9	485.3	11.312	98	0.031	62.743	257.156	4.099	262.4	43.43	485.3	42.9	151.7434661	82.05593529	251.9126636	125.3862749	SSC_p20	2.142857143	2.142857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.042	98	0	0	NA	2qF1	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.247664968	sgMsh2	cell line
chr2	89013584	89013584	A	G	ENSMUST00000217000.1	5	ENSMUSG00000075107	missense	I/T	160	Olfr1216	ENSMUST00000217000.1:c.479T>C	ENSMUSP00000149441.1:p.Ile160Thr	H-2-Kb	9	10	2	VTFTLQLPL	VIFTLQLPL	NetMHCpan	22.1	29.4	1.33	630	0.181	77.388	75.367	0.974	58.24	51.44	29.4	22.1	92.49324152	109.6755952	94.24319478	103.3356082	SSC_p20	1.2	1.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.178	630	0	0	NA	2qE1	chr2-88909196-94430128	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr2	89977882	89977882	C	T	ENSMUST00000111512.9	2	ENSMUSG00000042894	missense	L/F	35	Olfr1260	ENSMUST00000111512.9:c.103C>T	ENSMUSP00000107137.1:p.Leu35Phe	H-2-Kb	9	9	3	YSFTLIGNL	YSLTLIGNL	NetMHCpan	30.8	159.7	5.185	283	0.194	163.774	484.819	2.96	207.12	52.6	159.7	30.8	937.7995068	334.2796971	762.5178243	274.9476424	SSC_p20	1.471428571	1.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.196	283	0	0	NA	2qE1	chr2-88909196-94430128	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr2	111335694	111335694	C	A	ENSMUST00000099618.1	NA	ENSMUSG00000096554	missense	R/M	128	Olfr1282	ENSMUST00000099618.1:c.383G>T	ENSMUSP00000097213.1:p.Arg128Met	H-2-Kb	9	10	2	CMPLHYSSI	CRPLHYSSI	NetMHC	94.4	1410.95	14.947	617	0.227	136.949	1266.807	9.25	1410.95	94.4	2800.2	169.4	724.6194716	104.4984864	1122.664526	174.2809827	SSC_p20	0.085714286	0.185714286	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.223	617	0	0	NA	2qE3	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr2	86445613	86445613	T	C	ENSMUST00000217586.2	5	ENSMUSG00000111306	missense	Y/C	123	Olfr1065	ENSMUST00000217586.2:c.368A>G	ENSMUSP00000149248.1:p.Tyr123Cys	H-2-Kb	9	6	6	MSYDRCVAI	MSYDRYVAI	NetMHCpan	74.8	9.3	0.124	367	0.131	107.253	21.056	0.196	15.55	99.36	9.3	74.8	32.36756285	151.7434661	26.56134116	115.1463034	SSC_p20	0.528571429	0.528571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.129	367	0	0	NA	2qD	chr2-80837583-88897861	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.76068526	sgMsh2	cell line
chr2	88896946	88896946	A	G	ENSMUST00000214297.1	5	ENSMUSG00000075114	missense	I/T	217	Olfr1208	ENSMUST00000214297.1:c.650T>C	ENSMUSP00000149695.1:p.Ile217Thr	H-2-Kb	9	7	5	ISYITILSI	ISYIIILSI	NetMHCpan	74.4	161.2	2.167	298	0.158	183.527	264.472	1.441	264.55	114.06	161.2	74.4	347.6241981	252.9938709	264.3930288	253.0754397	SSC_p20	2.071428571	2.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.161	298	0	0	NA	2qE1	chr2-80837583-88897861	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.949382379	sgMsh2	cell line
chr2	89013584	89013584	A	G	ENSMUST00000217000.1	5	ENSMUSG00000075107	missense	I/T	160	Olfr1216	ENSMUST00000217000.1:c.479T>C	ENSMUSP00000149441.1:p.Ile160Thr	H-2-Kb	9	8	4	VQVTFTLQL	VQVIFTLQL	NetMHCpan	78.9	118.6	1.503	630	0.181	216.847	205.068	0.946	149.97	129.43	118.6	78.9	315.5803838	368.2222268	260.1656766	304.2636004	SSC_p20	1.385714286	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.178	630	0	0	NA	2qE1	chr2-88909196-94430128	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr2	111621333	111621333	A	G	ENSMUST00000213398.1	2	ENSMUSG00000094858	missense	V/A	247	Olfr1297	ENSMUST00000213398.1:c.740T>C	ENSMUSP00000150543.1:p.Val247Ala	H-2-Kb	9	10	2	VAMIFFLPC	VVMIFFLPC	SMMPMBEC	95.334	110.217	1.156	250	0.152	132.774	167.298	1.26	192	138.75	420.4	190.5	142.5968723	126.7972983	110.2173589	95.33447955	SSC_p20	2.385714286	3.114285714	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.156	250	0	0	NA	2qE3	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.919898454	sgMsh2	cell line
chr2	89296493	89296493	G	T	ENSMUST00000099787.1	NA	ENSMUSG00000075094	missense	P/H	259	Olfr1230	ENSMUST00000099787.1:c.776C>A	ENSMUSP00000097375.1:p.Pro259His	H-2-Kb	9	4	8	CIILYMRHV	CIILYMRPV	NetMHC	155.05	143.07	0.923	197	0.193	464.071	356.564	0.768	143.07	155.05	281.5	349.9	431.6283877	578.2424886	594.6343592	796.6177885	SSC_p20	0.771428571	1.628571429	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.192	197	0	0	NA	2qE1	chr2-88909196-94430128	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr2	89977882	89977882	C	T	ENSMUST00000111512.9	2	ENSMUSG00000042894	missense	L/F	35	Olfr1260	ENSMUST00000111512.9:c.103C>T	ENSMUSP00000107137.1:p.Leu35Phe	H-2-Kb	9	5	7	FALIYSFTL	FALIYSLTL	NetMHCpan	140.7	135.8	0.965	283	0.194	203.151	234.631	1.155	217.43	180.82	135.8	140.7	251.8314697	225.4810248	297.3377153	291.9106903	SSC_p20	1.728571429	1.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.196	283	0	0	NA	2qE1	chr2-88909196-94430128	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr2	91284247	91284247	A	G	ENSMUST00000102594.10	1	ENSMUSG00000040591	missense	F/L	147	1110051M20Rik	ENSMUST00000102594.10:c.439T>C	ENSMUSP00000099654.4:p.Phe147Leu	H-2-Kb	9	8	4	QIQLYYSEF	QIQFYYSEF	SMM	177.873	191.034	1.074	192	0.13	233.567	248.13	1.062	224.46	181.21	352.1	442.3	191.0337056	177.8729877	271.8003427	285.9235978	SSC_p20	-0.542857143	-0.3	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.145	192	0	0	NA	2qE1	chr2-88909196-94430128	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.855033819	sgMsh2	cell line
chr2	119139420	119139420	GT	G	ENSMUST00000094695.11	1	ENSMUSG00000070730	FS	T/X	387	Rmdn3	ENSMUST00000094695.11:c.1159del	ENSMUSP00000092283.5:p.Thr387ArgfsTer46	H-2-Kb	9	45	0	DGYIFLSAI	NA	NetMHC	187.49	NA	NA	127	0.205	309.473	NA	NA	NA	187.49	NA	212.4	NA	406.5462879	NA	510.7989549	SSC_p20	2.185714286	2.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2047	127	0	0	NA	2qE5	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr2	91284247	91284247	A	G	ENSMUST00000102594.10	1	ENSMUSG00000040591	missense	F/L	147	1110051M20Rik	ENSMUST00000102594.10:c.439T>C	ENSMUSP00000099654.4:p.Phe147Leu	H-2-Kb	9	9	3	IQLYYSEFL	IQFYYSEFL	NetMHCpan	192.4	29.6	0.154	192	0.13	382.31	125.453	0.328	51.33	204.72	29.6	192.4	199.5767748	559.8993973	219.4067579	608.4851727	SSC_p20	0.5	0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.145	192	0	0	NA	2qE1	chr2-88909196-94430128	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.855033819	sgMsh2	cell line
chr2	111780515	111780515	A	G	ENSMUST00000054004.1	NA	ENSMUSG00000044560	missense	N/S	68	Olfr1302	ENSMUST00000054004.1:c.203A>G	ENSMUSP00000061674.1:p.Asn68Ser	H-2-Kb	9	4	8	PMYFLLASL	PMYFLLANL	SMM	61.251	52.615	0.859	458	0.011	153.619	97.161	0.632	124.78	229.03	183.5	321.2	52.61505152	61.25055101	69.54245209	78.20778752	SSC_p20	1.985714286	1.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.014	458	0	0	NA	2qE3	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.082554989	sgMsh2	cell line
chr2	88794555	88794555	T	C	ENSMUST00000216213.1	5	ENSMUSG00000059023	missense	Y/H	58	Olfr1201	ENSMUST00000216213.1:c.172T>C	ENSMUSP00000150454.1:p.Tyr58His	H-2-Kb	9	11	1	HFFLFYLSF	YFFLFYLSF	SMM	65.934	42.083	0.638	388	0.149	164.189	97.984	0.597	139.96	233.7	867.9	956.3	42.08332054	65.93408748	56.00799166	94.67820161	SSC_p20	1.985714286	1.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.149	388	0	0	NA	2qE1	chr2-80837583-88897861	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.878620959	sgMsh2	cell line
chr2	88852771	88852771	A	G	ENSMUST00000213283.1	5	ENSMUSG00000061798	missense	T/A	274	Olfr1204	ENSMUST00000213283.1:c.820A>G	ENSMUSP00000150111.1:p.Thr274Ala	H-2-Kb	9	8	4	LFYAMITPM	LFYTMITPM	SMM	173.824	155.278	0.893	420	0.012	201.172	176.973	0.88	196.71	237.81	195	213	155.2780255	173.8241042	158.9461453	189.3433253	SSC_p20	0.928571429	1.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.015	420	0	0	NA	2qE1	chr2-80837583-88897861	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.088451774	sgMsh2	cell line
chr2	127245750	127245750	G	A	ENSMUST00000003759.10	1	ENSMUSG00000003662	missense	R/C	222	Ciao1	ENSMUST00000003759.10:c.664C>T	ENSMUSP00000003759.4:p.Arg222Cys	H-2-Kb	9	6	6	TVRIWCQYL	TVRIWRQYL	NetMHC	255.44	324	1.268	151	0.212	440.473	517.254	1.174	324	255.44	946.6	463.6	511.811453	455.1033161	522.696991	425.8434778	SSC_p20	0.085714286	0.228571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.215	151	0	0	NA	2qF1	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr2	91284247	91284247	A	G	ENSMUST00000102594.10	1	ENSMUSG00000040591	missense	F/L	147	1110051M20Rik	ENSMUST00000102594.10:c.439T>C	ENSMUSP00000099654.4:p.Phe147Leu	H-2-Kb	9	3	9	FLFAFQIQL	FLFAFQIQF	NetMHCpan	235.9	1129.7	4.789	192	0.13	317.333	742.822	2.341	735.56	268.86	1129.7	235.9	750.0841699	444.7438999	632.7760017	365.8053055	SSC_p20	1.242857143	2.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.145	192	0	0	NA	2qE1	chr2-88909196-94430128	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.855033819	sgMsh2	cell line
chr2	89977882	89977882	C	T	ENSMUST00000111512.9	2	ENSMUSG00000042894	missense	L/F	35	Olfr1260	ENSMUST00000111512.9:c.103C>T	ENSMUSP00000107137.1:p.Leu35Phe	H-2-Kb	9	3	9	VIFALIYSF	VIFALIYSL	SMM	272.339	161.477	0.593	283	0.194	305.185	129.778	0.425	98.08	292.5	57.7	414.6	161.47675	272.3391013	183.7595844	317.8703353	SSC_p20	1.942857143	2.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.196	283	0	0	NA	2qE1	chr2-88909196-94430128	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr2	91212313	91212313	T	C	ENSMUST00000028696.4	1	ENSMUSG00000002109	missense	N/D	401	Ddb2	ENSMUST00000028696.4:c.1201A>G	ENSMUSP00000028696.4:p.Asn401Asp	H-2-Kb	9	5	7	TSLNEFDPM	TSLNEFNPM	NetMHC	293.8	93.15	0.317	284	0.151	405.271	170.16	0.42	93.15	293.8	137.5	472.5	202.8196365	433.6206938	206.1816449	376.9207095	SSC_p20	-0.514285714	-0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.155	284	0	0	NA	2qE1	chr2-88909196-94430128	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.914001669	sgMsh2	cell line
chr2	117177703	117177703	A	G	ENSMUST00000028829.12	1	ENSMUSG00000027351	missense	I/M	363	Spred1	ENSMUST00000028829.12:c.1089A>G	ENSMUSP00000028829.6:p.Ile363Met	H-2-Kb	9	10	2	CMYQVSCML	CIYQVSCML	SMM	228.618	511.811	2.239	144	0.167	331.205	563.356	1.701	483.81	295.31	614.9	367.1	511.811453	228.6177783	851.6281337	411.386466	SSC_p20	0.971428571	0.971428571	TRUE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.18	144	0	0	NA	2qE5	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr2	88896946	88896946	A	G	ENSMUST00000214297.1	5	ENSMUSG00000075114	missense	I/T	217	Olfr1208	ENSMUST00000214297.1:c.650T>C	ENSMUSP00000149695.1:p.Ile217Thr	H-2-Kb	9	5	7	LVISYITIL	LVISYIIIL	NetMHCpan	136.8	607.9	4.444	298	0.158	297.255	480.237	1.616	707.28	319.65	607.9	136.8	290.4758291	274.859024	352.5737704	320.8115533	SSC_p20	2.071428571	2.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.161	298	0	0	NA	2qE1	chr2-80837583-88897861	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.949382379	sgMsh2	cell line
chr2	90052240	90052240	A	G	ENSMUST00000216475.1	5	ENSMUSG00000075068	missense	L/P	28	Olfr140	ENSMUST00000216475.1:c.83T>C	ENSMUSP00000150438.1:p.Leu28Pro	H-2-Kb	9	4	8	VQRMLFGPF	VQRMLFGLF	NetMHCpan	254.7	424.1	1.665	162	0.154	325.776	433.72	1.331	567.05	346.41	424.1	254.7	428.6570788	336.5968133	438.783209	314.9560825	SSC_p20	0.685714286	0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.157	162	0	0	NA	2qE1	chr2-88909196-94430128	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.925795239	sgMsh2	cell line
chr2	120986661	120986661	A	G	ENSMUST00000067582.13	1	ENSMUSG00000054484	missense	T/A	233	Tmem62	ENSMUST00000067582.13:c.697A>G	ENSMUSP00000064310.7:p.Thr233Ala	H-2-Kb	9	4	8	IWFGHFTAS	IWFGHFTTS	SMM	41.22	43.763	1.062	154	0.234	221.645	251.959	1.137	420.31	365.62	547.3	671	43.76329367	41.22019102	83.60841685	77.6694089	SSC_p20	0.328571429	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.243	154	0	0	NA	2qE5	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr2	87457486	87457486	T	C	ENSMUST00000213366.2	3	ENSMUSG00000058194	missense	M/T	107	Olfr1126	ENSMUST00000213366.2:c.320T>C	ENSMUSP00000150504.1:p.Met107Thr	H-2-Kb	9	9	3	TQTCFFLML	TQMCFFLML	NetMHCpan	108.4	33.4	0.308	474	0.112	365.866	117.824	0.322	98.48	373.43	33.4	108.4	146.9298381	375.9326101	137.1671136	358.3026333	SSC_p20	2.414285714	2.414285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.113	474	0	0	NA	2qD	chr2-80837583-88897861	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.666336701	sgMsh2	cell line
chr2	111621333	111621333	A	G	ENSMUST00000213398.1	2	ENSMUSG00000094858	missense	V/A	247	Olfr1297	ENSMUST00000213398.1:c.740T>C	ENSMUSP00000150543.1:p.Val247Ala	H-2-Kb	9	11	1	AMIFFLPCF	VMIFFLPCF	SMM	142.597	47.985	0.337	250	0.152	277.392	112.132	0.404	169.53	403.69	370.4	767.4	47.9854973	142.5968723	54.73309412	151.0949676	SSC_p20	2.514285714	2.514285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.156	250	0	0	NA	2qE3	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.919898454	sgMsh2	cell line
chr2	88794555	88794555	T	C	ENSMUST00000216213.1	5	ENSMUSG00000059023	missense	Y/H	58	Olfr1201	ENSMUST00000216213.1:c.172T>C	ENSMUSP00000150454.1:p.Tyr58His	H-2-Kb	9	7	5	GSPMHFFLF	GSPMYFFLF	SMM	299.302	239.944	0.802	388	0.149	332.253	254.008	0.765	359.52	467.22	211.9	327.8	239.9440583	299.3022626	268.0711022	336.7053368	SSC_p20	1.328571429	1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.149	388	0	0	NA	2qE1	chr2-80837583-88897861	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.878620959	sgMsh2	cell line
chr2	87656102	87656102	A	AT	ENSMUST00000135875.3	5	ENSMUSG00000111747	FS	M/NX	273	Olfr1134	ENSMUST00000135875.3:c.817dup	ENSMUSP00000150837.1:p.Met273AsnfsTer23	H-2-Kb	9	20	0	DSYVKPTYL	NA	SMM	254.748	NA	NA	487	0.164	435.96	NA	NA	NA	486.22	NA	545.4	NA	254.7475407	NA	385.7003207	SSC_p20	-0.114285714	-0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.163	487	0	0	NA	2qD	chr2-80837583-88897861	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.961175949	sgMsh2	cell line
chr2	86347406	86347406	T	C	ENSMUST00000213564.2	5	ENSMUSG00000075189	missense	Y/C	120	Olfr1055	ENSMUST00000213564.2:c.359A>G	ENSMUSP00000149219.1:p.Tyr120Cys	H-2-Kb	9	9	3	MACDRYVAI	MAYDRYVAI	SMMPMBEC	240.021	33.439	0.139	273	0.132	487.773	30.259	0.062	27.08	527.72	14.4	804.5	39.27443988	447.8267173	33.43874735	240.0214196	SSC_p20	0.528571429	0.528571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.136	273	0	0	NA	2qD	chr2-80837583-88897861	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.801962755	sgMsh2	cell line
chr2	119921746	119921746	GT	G	ENSMUST00000110774.7	5	ENSMUSG00000033943	FS	F/X	774	Mga	ENSMUST00000110774.7:c.2322del	ENSMUSP00000106401.1:p.Pro775LeufsTer39	H-2-Kb	9	31	0	ENFKMLLHL	NA	NetMHCpan	313.7	NA	NA	153	0.288	347.684	NA	NA	NA	658.3	NA	313.7	NA	346.02701	NA	349.3413547	SSC_p20	1.285714286	1.285714286	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2	2	0.288	153	0	0	NA	2qE5	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr2	87093226	87093226	G	A	ENSMUST00000214636.1	5	ENSMUSG00000075161	missense	T/I	57	Olfr1109	ENSMUST00000214636.1:c.170C>T	ENSMUSP00000150159.1:p.Thr57Ile	H-2-Kb	9	9	3	LHIPMYFFL	LHTPMYFFL	NetMHCpan	253	641.3	2.535	309	0.026	412.059	999.913	2.427	3014.51	777.6	641.3	253	939.9613579	397.2921646	1059.863656	426.8251484	SSC_p20	1.842857143	1.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.027	309	0	0	NA	2qD	chr2-80837583-88897861	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.159213194	sgMsh2	cell line
chr2	88794555	88794555	T	C	ENSMUST00000216213.1	5	ENSMUSG00000059023	missense	Y/H	58	Olfr1201	ENSMUST00000216213.1:c.172T>C	ENSMUSP00000150454.1:p.Tyr58His	H-2-Kb	9	9	3	PMHFFLFYL	PMYFFLFYL	SMM	99.566	17.503	0.176	388	0.149	493.774	110.51	0.224	190.1	819.57	486.9	1090.9	17.50289954	99.56575699	30.92074862	167.9770694	SSC_p20	1.642857143	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.149	388	0	0	NA	2qE1	chr2-80837583-88897861	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.878620959	sgMsh2	cell line
chr2	158768178	158768178	C	T	ENSMUST00000029183.2	1	ENSMUSG00000027654	missense	P/L	22	Fam83d	ENSMUST00000029183.2:c.65C>T	ENSMUSP00000029183.2:p.Pro22Leu	H-2-Db	9	8	4	CGPLNPTEL	CGPPNPTEL	NetMHC	65.56	425.32	6.487	34	0.353	216.905	644.766	2.973	425.32	65.56	306.4	93.7	864.2114181	340.1104688	1154.968129	410.7428385	SSC_p20	-0.471428571	-0.214285714	TRUE	FALSE	FALSE	1	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.361	34	0	0	NA	2qH1	chr2-152275073-181807525	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr2	164795107	164795107	A	G	ENSMUST00000103094.10	1	ENSMUSG00000017307	missense	L/P	241	Acot8	ENSMUST00000103094.10:c.722T>C	ENSMUSP00000099383.4:p.Leu241Pro	H-2-Db	9	4	8	YAFLGTAPL	YAFLGTALL	NetMHCpan	31.9	216.5	6.787	56	0.161	129.363	551.616	4.264	584.02	94.83	216.5	31.9	559.2680377	173.6280949	543.9638013	163.896621	SSC_p20	1.357142857	1.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.178	56	0	0	NA	2qH3	chr2-152275073-181807525	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr2	144502992	144502992	T	G	ENSMUST00000081982.11	1	ENSMUSG00000037259	missense	N/H	282	Dzank1	ENSMUST00000081982.11:c.844A>C	ENSMUSP00000080643.5:p.Asn282His	H-2-Db	9	6	6	SMVPMHTPI	SMVPMNTPI	NetMHCpan	144	267.7	1.859	99	0.172	187.569	250.676	1.336	283.68	162.51	267.7	144	221.1159138	212.6277776	233.6522675	228.3336925	SSC_p20	0.5	0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.185	99	0	0	NA	2qG1	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr2	178354939	178354939	G	A	ENSMUST00000081134.9	1	ENSMUSG00000060445	missense	P/L	1157	Sycp2	ENSMUST00000081134.9:c.3470C>T	ENSMUSP00000079909.3:p.Pro1157Leu	H-2-Db	9	9	3	YSLASGPPF	YSPASGPPF	NetMHC	383.66	992.3	2.586	133	0.248	434.425	1327.158	3.055	992.3	383.66	1149.2	416.4	1590.816182	489.350459	1505.116095	452.4493827	SSC_p20	0.571428571	0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.242	133	0	0	NA	2qH4	chr2-152275073-181807525	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr2	155385359	155385359	A	C	ENSMUST00000043237.13	1	ENSMUSG00000038375	missense	S/R	7	Trp53inp2	ENSMUST00000043237.13:c.19A>C	ENSMUSP00000037627.7:p.Ser7Arg	H-2-Kb	8	1	7	MFQRFTRL	MFQRFTSL	SMM	23.001	40.063	1.742	168	0.196	28.079	48.875	1.741	46.15	26.46	51.6	43.3	40.06268017	23.00064421	53.42444264	29.69887511	SSC_p20	-0.542857143	-0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.196	168	0	0	NA	2qH1	chr2-152275073-181807525	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr2	180193764	180193764	CG	C	ENSMUST00000015791.5	1	ENSMUSG00000015647	FS	P/X	1265	Lama5	ENSMUST00000015791.5:c.3795del	ENSMUSP00000015791.5:p.Glu1266ArgfsTer101	H-2-Kb	8	64	0	SLWRYSLM	NA	NetMHCpan	30.8	NA	NA	43	0.302	85.705	NA	NA	NA	40.57	NA	30.8	NA	173.6760767	NA	130.8398387	SSC_p20	0.285714286	0.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.318	43	0	0	NA	2qH4	chr2-152275073-181807525	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr3	88449705	88449705	T	C	ENSMUST00000029700.11	1	ENSMUSG00000028064	missense	I/V	320	Sema4a	ENSMUST00000029700.11:c.958A>G	ENSMUSP00000029700.5:p.Ile320Val	H-2-Kb	8	8	4	VSRVYAVF	VSRIYAVF	NetMHC	46.39	61.42	1.324	64	0.359	77.618	86.384	1.113	61.42	46.39	74.2	72.3	105.1332282	96.76983488	98.56892043	82.93541077	SSC_p20	0.914285714	1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.373	64	0	0	NA	3qF1	chr3-86786943-102854538	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr2	132240580	132240580	A	G	ENSMUST00000110164.7	2	ENSMUSG00000027341	missense	F/S	90	Tmem230	ENSMUST00000110164.7:c.269T>C	ENSMUSP00000105793.1:p.Phe90Ser	H-2-Kb	8	11	1	SLPGFYHL	FLPGFYHL	NetMHCpan	98.2	522.1	5.317	146	0.219	164.475	459.527	2.794	694.44	114.79	522.1	98.2	387.9180607	214.1608096	396.9538331	229.4774419	SSC_p20	0.557142857	0.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.217	146	0	0	NA	2qF2	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr3	28794409	28794409	G	A	ENSMUST00000060500.8	1	ENSMUSG00000050192	missense	C/Y	139	Eif5a2	ENSMUST00000060500.8:c.416G>A	ENSMUSP00000050289.7:p.Cys139Tyr	H-2-Kb	8	7	5	VSVMYAMS	VSVMCAMS	SMM	72.734	814.217	11.194	201	0.229	100.979	2855.808	28.281	5114.17	120.91	4897.4	389.8	814.2166892	72.73442335	792.027024	81.04757034	SSC_p20	0.985714286	1.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	201	0	0	NA	3qA3	chr3-10012637-86781925	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr3	62602681	62602681	C	T	ENSMUST00000058535.5	1	ENSMUSG00000043441	missense	G/R	338	Gpr149	ENSMUST00000058535.5:c.1012G>A	ENSMUSP00000060893.5:p.Gly338Arg	H-2-Kb	8	8	4	HVVRFQSL	HVVGFQSL	NetMHCpan	94.1	530	5.632	85	0.153	176.107	900.3	5.112	1288.64	123.79	530	94.1	999.401507	291.5680954	801.1982647	228.4230889	SSC_p20	0.885714286	0.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.162	85	0	0	NA	3qE1	chr3-10012637-86781925	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.955279164	sgMsh2	cell line
chr3	87913145	87913145	CT	C	ENSMUST00000005017.14	1	ENSMUSG00000004897	FS	F/X	48	Hdgf	ENSMUST00000005017.14:c.150del	ENSMUSP00000005017.8:p.Phe50LeufsTer91	H-2-Kb	8	9	5	QVFFLGPM	QVFFFGTH	NetMHCpan	133.5	6279.1	47.034	156	0.199	329.335	4621.078	14.032	8076.13	242.05	6279.1	133.5	2963.056959	416.6198901	1332.723329	491.7450535	SSC_p20	1.928571429	1.928571429	TRUE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1987	156	0	0	NA	3qF1	chr3-86786943-102854538	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr3	87913145	87913145	CT	C	ENSMUST00000005017.14	1	ENSMUSG00000004897	FS	F/X	48	Hdgf	ENSMUST00000005017.14:c.150del	ENSMUSP00000005017.8:p.Phe50LeufsTer91	H-2-Kb	8	54	0	TTLQSRPL	NA	SMM	174.478	NA	NA	156	0.199	286.989	NA	NA	NA	375.03	NA	851.1	NA	174.4777291	NA	198.9481935	SSC_p20	-0.5	-0.5	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1987	156	0	0	NA	3qF1	chr3-86786943-102854538	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr3	89761063	89761063	C	A	ENSMUST00000029562.4	1	ENSMUSG00000027950	missense	S/I	315	Chrnb2	ENSMUST00000029562.4:c.944G>T	ENSMUSP00000029562.3:p.Ser315Ile	H-2-Kb	8	4	8	VTFSIVTI	VTFSIVTS	NetMHCpan	104.1	2989.9	28.721	97	0.134	372.962	2062.116	5.529	6297.17	384.73	2989.9	104.1	1017.981768	498.5859086	1134.33152	361.1935614	SSC_p20	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.144	97	0	0	NA	3qF1	chr3-86786943-102854538	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.849137034	sgMsh2	cell line
chr2	180193764	180193764	CG	C	ENSMUST00000015791.5	1	ENSMUSG00000015647	FS	P/X	1265	Lama5	ENSMUST00000015791.5:c.3795del	ENSMUSP00000015791.5:p.Glu1266ArgfsTer101	H-2-Kb	8	85	0	VLMVMAAV	NA	SMMPMBEC	352.16	NA	NA	43	0.302	466.785	NA	NA	NA	436.13	NA	574.3	NA	497.4391928	NA	352.1599796	SSC_p20	2.8	2.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.318	43	0	0	NA	2qH4	chr2-152275073-181807525	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr3	14481277	14481277	A	G	ENSMUST00000037321.7	1	ENSMUSG00000039710	missense	K/E	161	Slc7a12	ENSMUST00000037321.7:c.481A>G	ENSMUSP00000038574.7:p.Lys161Glu	H-2-Kb	8	7	5	SSFIELSV	SSFIKLSV	NetMHCpan	262.5	124.8	0.475	200	0.24	331.596	395.589	1.193	273.88	480.71	124.8	262.5	517.2970479	357.8821189	541.6765067	305.3092764	SSC_p20	1.457142857	1.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.242	200	0	0	NA	3qA1	chr3-10012637-86781925	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr3	68927791	68927791	A	G	ENSMUST00000107812.7	5	ENSMUSG00000027778	missense	I/T	439	Ift80	ENSMUST00000107812.7:c.1316T>C	ENSMUSP00000103442.1:p.Ile439Thr	H-2-Kb	8	11	1	TIFLFEAS	IIFLFEAS	SMM	114.483	40.902	0.357	64	0.266	496.639	214.122	0.431	378.83	1363.31	368.3	827.8	40.90157201	114.482736	59.94321055	165.4778997	SSC_p20	1.628571429	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.279	64	0	0	NA	3qE1	chr3-10012637-86781925	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr3	19144391	19144391	CA	C	ENSMUST00000029125.9	1	ENSMUSG00000027599	FS	L/X	135	Armc1	ENSMUST00000029125.9:c.404del	ENSMUSP00000029125.8:p.Leu135TrpfsTer11	H-2-Kb	8	6	6	KAQFFWEL	KAQFFLGT	NetMHCpan	149.3	1986.6	13.306	112	0.295	459.056	3918.761	8.537	6736.57	1628.41	1986.6	149.3	4233.894187	392.4099402	3603.628392	525.7024488	SSC_p20	0.471428571	0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.292	112	0	0	NA	3qA2	chr3-10012637-86781925	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr3	14537323	14537323	A	G	ENSMUST00000169079.7	1	ENSMUSG00000027550	missense	T/A	159	Lrrcc1	ENSMUST00000169079.7:c.475A>G	ENSMUSP00000126560.1:p.Thr159Ala	H-2-Kb	9	5	7	VGLHFLANL	VGLHFLTNL	NetMHC	4.15	7.44	1.793	57	0.193	41.016	55.134	1.344	7.44	4.15	6.9	5.1	102.8276712	76.93252737	105.7426037	77.6694089	SSC_p20	1.328571429	1.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.214	57	0	0	NA	3qA1	chr3-10012637-86781925	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr2	132240580	132240580	A	G	ENSMUST00000110164.7	2	ENSMUSG00000027341	missense	F/S	90	Tmem230	ENSMUST00000110164.7:c.269T>C	ENSMUSP00000105793.1:p.Phe90Ser	H-2-Kb	9	10	2	VSLPGFYHL	VFLPGFYHL	NetMHC	22.77	187.13	8.218	146	0.219	93.901	246.108	2.621	187.13	22.77	200.4	30	291.8166046	157.8010905	341.3893746	169.9221522	SSC_p20	0.557142857	0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.217	146	0	0	NA	2qF2	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr2	151706653	151706653	T	C	ENSMUST00000060196.2	1	ENSMUSG00000044364	missense	V/A	100	Tmem74b	ENSMUST00000060196.2:c.299T>C	ENSMUSP00000060017.2:p.Val100Ala	H-2-Kb	9	6	6	VDYGFASAL	VDYGFVSAL	NetMHC	61.82	58.19	0.941	69	0.319	78.38	73.491	0.938	58.19	61.82	68.8	72.6	78.18258038	84.16082809	79.66177885	102.8608242	SSC_p20	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.328	69	0	0	NA	2qG3	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr3	62602681	62602681	C	T	ENSMUST00000058535.5	1	ENSMUSG00000043441	missense	G/R	338	Gpr149	ENSMUST00000058535.5:c.1012G>A	ENSMUSP00000060893.5:p.Gly338Arg	H-2-Kb	9	7	5	KHVVRFQSL	KHVVGFQSL	NetMHC	123.24	1672.99	13.575	85	0.153	308.967	1765.932	5.716	1672.99	123.24	1270.9	267.9	1884.126249	350.0338139	1858.874201	358.3026333	SSC_p20	0.885714286	0.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.162	85	0	0	NA	3qE1	chr3-10012637-86781925	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.955279164	sgMsh2	cell line
chr2	164795107	164795107	A	G	ENSMUST00000103094.10	1	ENSMUSG00000017307	missense	L/P	241	Acot8	ENSMUST00000103094.10:c.722T>C	ENSMUSP00000099383.4:p.Leu241Pro	H-2-Kb	9	4	8	YAFLGTAPL	YAFLGTALL	NetMHCpan	61.9	144.5	2.334	56	0.161	192.709	279.849	1.452	231.52	128.23	144.5	61.9	328.178405	257.6973782	358.3026333	257.1875847	SSC_p20	1.357142857	1.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.178	56	0	0	NA	2qH3	chr2-152275073-181807525	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr2	180472194	180472194	C	A	ENSMUST00000038225.7	1	ENSMUSG00000038963	missense	L/I	475	Slco4a1	ENSMUST00000038225.7:c.1423C>A	ENSMUSP00000045023.7:p.Leu475Ile	H-2-Kb	9	9	3	VFIMHCPNV	VFLMHCPNV	NetMHC	154.14	154.16	1	199	0.276	264.235	279.514	1.058	154.16	154.14	321.3	266.5	288.4762076	287.1507798	270.5515336	261.9690589	SSC_p20	0.685714286	1.585714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.265	199	0	0	NA	2qH4	chr2-152275073-181807525	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr3	88652659	88652659	T	C	ENSMUST00000063119.4	NA	ENSMUSG00000049741	missense	T/A	162	Rxfp4	ENSMUST00000063119.4:c.484A>G	ENSMUSP00000058732.4:p.Thr162Ala	H-2-Kb	9	4	8	VFWARVVAL	VFWARVVTL	NetMHC	154.36	184.67	1.196	109	0.284	172.166	183.582	1.066	184.67	154.36	154.2	174.8	238.8416155	224.9624328	182.4945923	169.531342	SSC_p20	1.485714286	1.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.278	109	0	0	NA	3qF1	chr3-86786943-102854538	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr3	14481277	14481277	A	G	ENSMUST00000037321.7	1	ENSMUSG00000039710	missense	K/E	161	Slc7a12	ENSMUST00000037321.7:c.481A>G	ENSMUSP00000038574.7:p.Lys161Glu	H-2-Kb	9	7	5	SSFIELSVL	SSFIKLSVL	NetMHCpan	88.9	31.7	0.357	200	0.24	169.262	50.82	0.3	40.51	167.48	31.7	88.9	65.63114787	171.044849	61.12938126	181.6561058	SSC_p20	2.114285714	2.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.242	200	0	0	NA	3qA1	chr3-10012637-86781925	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr3	68927791	68927791	A	G	ENSMUST00000107812.7	5	ENSMUSG00000027778	missense	I/T	439	Ift80	ENSMUST00000107812.7:c.1316T>C	ENSMUSP00000103442.1:p.Ile439Thr	H-2-Kb	9	11	1	TIFLFEAST	IIFLFEAST	NetMHC	181.4	78.59	0.433	64	0.266	236.705	140.504	0.594	78.59	181.4	219.4	418.7	139.6722084	239.3922023	141.3350901	234.0183969	SSC_p20	0.885714286	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.279	64	0	0	NA	3qE1	chr3-10012637-86781925	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr2	180193764	180193764	CG	C	ENSMUST00000015791.5	1	ENSMUSG00000015647	FS	P/X	1265	Lama5	ENSMUST00000015791.5:c.3795del	ENSMUSP00000015791.5:p.Glu1266ArgfsTer101	H-2-Kb	9	63	0	PSLWRYSLM	NA	SMM	60.41	NA	NA	43	0.302	148.143	NA	NA	NA	224.96	NA	455.1	NA	60.41016195	NA	71.32634994	SSC_p20	0.285714286	0.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.318	43	0	0	NA	2qH4	chr2-152275073-181807525	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr2	144502992	144502992	T	G	ENSMUST00000081982.11	1	ENSMUSG00000037259	missense	N/H	282	Dzank1	ENSMUST00000081982.11:c.844A>C	ENSMUSP00000080643.5:p.Asn282His	H-2-Kb	9	6	6	SMVPMHTPI	SMVPMNTPI	NetMHCpan	204.7	977.9	4.777	99	0.172	291.792	890.02	3.05	1246.33	226.22	977.9	204.7	755.2835049	357.3633412	802.1396792	389.2691619	SSC_p20	0.5	0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.185	99	0	0	NA	2qG1	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr3	87913145	87913145	CT	C	ENSMUST00000005017.14	1	ENSMUSG00000004897	FS	F/X	48	Hdgf	ENSMUST00000005017.14:c.150del	ENSMUSP00000005017.8:p.Phe50LeufsTer91	H-2-Kb	9	8	6	YQVFFLGPM	YQVFFFGTH	NetMHCpan	208	10598.6	50.955	156	0.199	455.442	6575.522	14.438	9408.99	400.25	10598.6	208	3742.053566	510.6343193	3063.726549	525.1096507	SSC_p20	1.928571429	1.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1987	156	0	0	NA	3qF1	chr3-86786943-102854538	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr3	158318471	158318471	G	T	ENSMUST00000200137.4	1	ENSMUSG00000028176	missense	L/I	96	Lrrc7	ENSMUST00000200137.4:c.286C>A	ENSMUSP00000142498.1:p.Leu96Ile	H-2-Db	9	9	3	ASIVNLKEL	ASLVNLKEL	NetMHCpan	18.7	28.1	1.503	129	0.209	27.357	35.126	1.284	39.8	27.51	28.1	18.7	30.45229302	27.20320034	40.69771255	35.12125287	SSC_p20	0.771428571	0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.191	129	0	0	NA	3qH4	chr3-108571396-159913826	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr4	75956378	75956378	C	A	ENSMUST00000173376.7	1	ENSMUSG00000028399	missense	R/M	1281	Ptprd	ENSMUST00000173376.7:c.3842G>T	ENSMUSP00000133468.1:p.Arg1281Met	H-2-Db	9	9	3	STMVCLQPI	STRVCLQPI	NetMHCpan	182.5	5235.2	28.686	67	0.224	379.307	5485.672	14.462	10034.86	283.75	5235.2	182.5	5736.143402	580.2564812	4961.00883	474.8648239	SSC_p20	1.685714286	1.685714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.242	67	0	0	NA	4qC3	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr4	53543568	53543568	T	G	ENSMUST00000102911.9	1	ENSMUSG00000028412	missense	F/V	371	Slc44a1	ENSMUST00000102911.9:c.1111T>G	ENSMUSP00000099975.3:p.Phe371Val	H-2-Db	9	3	9	SAVQNEQGV	SAVQNEQGF	NetMHCpan	285	1199.9	4.21	50	0.28	439.175	1124.262	2.56	1656.13	315.27	1199.9	285	1048.624499	678.6096014	852.2558677	563.0798678	SSC_p20	-0.857142857	-0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.283	50	0	0	NA	4qB2	chr4-3172993-59912905	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr4	53040735	53040735	A	C	ENSMUST00000030010.3	1	ENSMUSG00000015243	missense	F/V	1971	Abca1	ENSMUST00000030010.3:c.5911T>G	ENSMUSP00000030010.3:p.Phe1971Val	H-2-Db	9	9	3	DAVLNKNSI	DAFLNKNSI	SMM	231.004	245.256	1.062	74	0.297	434.531	573.778	1.32	1530.77	624.96	902.3	1359.8	245.2562028	231.0042659	242.4208669	244.1012481	SSC_p20	0.114285714	0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.333	74	0	0	NA	4qB2	chr4-3172993-59912905	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr4	113483888	113483888	A	G	ENSMUST00000169631.7	1	ENSMUSG00000078598	missense	Y/H	1419	Skint5	ENSMUST00000169631.7:c.4255T>C	ENSMUSP00000132470.1:p.Tyr1419His	H-2-Kb	8	5	7	ATILYMHL	ATILYMYL	NetMHC	4.93	6.7	1.359	104	0.298	14.773	17.882	1.21	6.7	4.93	15.5	9	20.26469166	21.21973715	21.12224132	20.5466016	SSC_p20	1.257142857	1.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.297	104	0	0	NA	4qD1	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr4	46166741	46166741	A	G	ENSMUST00000030014.8	1	ENSMUSG00000028330	missense	E/G	535	Ncbp1	ENSMUST00000030014.8:c.1604A>G	ENSMUSP00000030014.8:p.Glu535Gly	H-2-Kb	8	11	1	GGFRFNPL	EGFRFNPL	NetMHC	9.9	18.78	1.897	52	0.308	15.648	32.142	2.054	18.78	9.9	41.7	14.9	35.46010359	23.75417764	28.82305431	16.39607892	SSC_p20	-0.085714286	-0.085714286	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.314	52	0	0	NA	4qB1	chr4-3172993-59912905	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr3	105005546	105005546	C	A	ENSMUST00000077548.11	1	ENSMUSG00000062127	missense	A/S	341	Cttnbp2nl	ENSMUST00000077548.11:c.1021G>T	ENSMUSP00000076751.5:p.Ala341Ser	H-2-Kb	8	11	1	SAYSYAKA	AAYSYAKA	NetMHC	11.09	24.13	2.176	132	0.295	44.921	75.024	1.67	24.13	11.09	53.5	32.2	129.0446488	68.82401428	96.54727043	57.64212727	SSC_p20	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.303	132	0	0	NA	3qF2.2	chr3-102864579-107472486	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr4	115496100	115496100	TA	T	ENSMUST00000030487.2	1	ENSMUSG00000028715	FS	L/X	5	Cyp4a14	ENSMUST00000030487.2:c.14del	ENSMUSP00000030487.2:p.Leu5TyrfsTer60	H-2-Kb	8	1	5	MGFFYLAL	MGFFLFSP	NetMHCpan	5.6	744.4	132.929	45	0.444	8.822	1514.642	171.684	3458.5	11.16	744.4	5.6	1408.445349	8.011982647	1620.839455	9.632521787	SSC_p20	1.9	1.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.445	45	0	0	NA	4qD1	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr4	115496100	115496100	TA	T	ENSMUST00000030487.2	1	ENSMUSG00000028715	FS	L/X	5	Cyp4a14	ENSMUST00000030487.2:c.14del	ENSMUSP00000030487.2:p.Leu5TyrfsTer60	H-2-Kb	8	48	0	SSISHACL	NA	NetMHC	26.78	NA	NA	45	0.444	42.587	NA	NA	NA	26.78	NA	86	NA	42.04748265	NA	43.12608157	SSC_p20	1.114285714	1.114285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.445	45	0	0	NA	4qD1	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr3	108624645	108624645	A	G	ENSMUST00000051145.14	1	ENSMUSG00000040389	missense	Q/R	449	Wdr47	ENSMUST00000051145.14:c.1346A>G	ENSMUSP00000057482.8:p.Gln449Arg	H-2-Kb	8	11	1	RMYQQMLL	QMYQQMLL	NetMHC	67.4	94.29	1.399	71	0.239	121.812	213.148	1.75	94.29	67.4	182.1	93.4	244.1968177	150.2242346	524.4933667	251.0383085	SSC_p20	0.442857143	0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.253	71	0	0	NA	3qF3	chr3-108571396-159913826	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr3	157016244	157016244	C	T	ENSMUST00000074015.10	1	ENSMUSG00000040037	missense	L/F	152	Negr1	ENSMUST00000074015.10:c.454C>T	ENSMUSP00000073664.4:p.Leu152Phe	H-2-Kb	8	7	5	TNVTFTCL	TNVTLTCL	NetMHC	68.92	2992.96	43.427	229	0.044	94.126	1470.196	15.62	2992.96	68.92	1641	77.4	1299.391436	123.2366829	1182.333514	110.8510982	SSC_p20	1.2	1.2	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.046	229	0	0	NA	3qH4	chr3-108571396-159913826	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.271252108	sgMsh2	cell line
chr4	115014223	115014223	A	G	ENSMUST00000030490.12	1	ENSMUSG00000028718	missense	N/S	330	Stil	ENSMUST00000030490.12:c.989A>G	ENSMUSP00000030490.6:p.Asn330Ser	H-2-Kb	8	6	6	TLHLFSNV	TLHLFNNV	NetMHCpan	103.7	224.2	2.162	116	0.319	136.53	304.681	2.232	334.06	109.1	224.2	103.7	326.3923717	201.7158386	282.9697428	163.9607892	SSC_p20	1.014285714	1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.319	116	0	0	NA	4qD1	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr4	12053539	12053539	T	C	ENSMUST00000050686.9	1	ENSMUSG00000049488	missense	T/A	670	Tmem67	ENSMUST00000050686.9:c.2008A>G	ENSMUSP00000052644.3:p.Thr670Ala	H-2-Kb	8	6	6	VSIWRAYF	VSIWRTYF	NetMHCpan	95.6	211.9	2.217	185	0.384	324.663	983.495	3.029	485.36	141.47	211.9	95.6	1921.940772	672.5738845	1481.630809	507.8553127	SSC_p20	0.228571429	0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.365	185	0	0	NA	4qA1	chr4-3172993-59912905	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr4	113483888	113483888	A	G	ENSMUST00000169631.7	1	ENSMUSG00000078598	missense	Y/H	1419	Skint5	ENSMUST00000169631.7:c.4255T>C	ENSMUSP00000132470.1:p.Tyr1419His	H-2-Kb	8	7	5	ILYMHLQI	ILYMYLQI	NetMHCpan	66.5	26.6	0.4	104	0.298	185.475	37.904	0.204	32.88	185.28	26.6	66.5	70.91530907	274.6249558	42.92793522	185.6692572	SSC_p20	0.857142857	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.297	104	0	0	NA	4qD1	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr4	74170660	74170660	A	G	ENSMUST00000084474.5	1	ENSMUSG00000049122	missense	S/G	365	Frmd3	ENSMUST00000084474.5:c.1093A>G	ENSMUSP00000081514.5:p.Ser365Gly	H-2-Kb	8	8	4	QSRGFHSL	QSRSFHSL	SMM	150.224	65.274	0.435	56	0.321	214.23	81.245	0.379	42.93	203.17	173.7	465.2	65.27396586	150.2242346	97.21650414	225.2890066	SSC_p20	-0.442857143	-0.442857143	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.307	56	0	0	NA	4qC3	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr3	103928888	103928888	T	C	ENSMUST00000068879.10	1	ENSMUSG00000044098	missense	I/T	414	Rsbn1	ENSMUST00000068879.10:c.1241T>C	ENSMUSP00000069246.4:p.Ile414Thr	H-2-Kb	8	5	7	AYYALATV	AYYALAIV	NetMHC	253.92	755.72	2.976	154	0.214	354.427	877.561	2.476	755.72	253.92	648.4	272.6	999.401507	436.2545806	1204.314735	461.0414792	SSC_p20	1.185714286	1.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.217	154	0	0	NA	3qF2.2	chr3-102864579-107472486	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr3	153509458	153509458	T	C	ENSMUST00000200397.4	1	ENSMUSG00000052544	missense	I/V	20	St6galnac3	ENSMUST00000200397.4:c.58A>G	ENSMUSP00000143747.1:p.Ile20Val	H-2-Kb	8	11	1	VLLLAMRL	ILLLAMRL	SMM	221.177	235.907	1.067	52	0.231	239.723	253.353	1.057	302.11	262.11	270.8	238.6	235.9065504	221.1770188	234.8226582	240.8463117	SSC_p20	2.057142857	2.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.241	52	0	0	NA	3qH3	chr3-108571396-159913826	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr3	116891951	116891951	T	C	ENSMUST00000195905.4	5	ENSMUSG00000033386	missense	Y/H	324	Frrs1	ENSMUST00000195905.4:c.970T>C	ENSMUSP00000143255.1:p.Tyr324His	H-2-Kb	8	10	2	SHYIFFAE	SYYIFFAE	SMM	62.193	100.171	1.611	149	0.248	189.236	314.034	1.659	494.18	286.27	516.8	344.9	100.1705365	62.19278428	133.88749	92.20192747	SSC_p20	0.557142857	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.263	149	0	0	NA	3qG1	chr3-108571396-159913826	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr3	153509458	153509458	T	C	ENSMUST00000200397.4	1	ENSMUSG00000052544	missense	I/V	20	St6galnac3	ENSMUST00000200397.4:c.58A>G	ENSMUSP00000143747.1:p.Ile20Val	H-2-Kb	8	4	8	VSFIALCV	VSFIALCI	SMM	205.94	373.887	1.816	52	0.231	246.911	373.028	1.511	640.38	398.71	236.9	259	373.8866857	205.9396641	372.1688324	234.8226582	SSC_p20	2.685714286	2.685714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.241	52	0	0	NA	3qH3	chr3-108571396-159913826	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr4	12053539	12053539	T	C	ENSMUST00000050686.9	1	ENSMUSG00000049488	missense	T/A	670	Tmem67	ENSMUST00000050686.9:c.2008A>G	ENSMUSP00000052644.3:p.Thr670Ala	H-2-Kb	8	7	5	SIWRAYFV	SIWRTYFV	SMM	348.129	511.376	1.469	185	0.384	477.147	499.306	1.046	462.02	549.96	782.4	686	511.3755976	348.1288376	487.2367077	404.3337559	SSC_p20	0.942857143	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.365	185	0	0	NA	4qA1	chr4-3172993-59912905	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr4	113483888	113483888	A	G	ENSMUST00000169631.7	1	ENSMUSG00000078598	missense	Y/H	1419	Skint5	ENSMUST00000169631.7:c.4255T>C	ENSMUSP00000132470.1:p.Tyr1419His	H-2-Kb	9	4	8	SATILYMHL	SATILYMYL	NetMHC	30.45	50.44	1.656	104	0.298	128.412	152.174	1.185	50.44	30.45	94.4	55.4	209.947158	201.4234359	235.640535	215.4021332	SSC_p20	1.257142857	1.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.297	104	0	0	NA	4qD1	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr3	103928888	103928888	T	C	ENSMUST00000068879.10	1	ENSMUSG00000044098	missense	I/T	414	Rsbn1	ENSMUST00000068879.10:c.1241T>C	ENSMUSP00000069246.4:p.Ile414Thr	H-2-Kb	9	4	8	AAYYALATV	AAYYALAIV	NetMHC	58.87	162.1	2.754	154	0.214	163.252	247.691	1.517	162.1	58.87	234.7	93.1	260.6813732	233.4049166	369.1900603	312.7879401	SSC_p20	1.185714286	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.217	154	0	0	NA	3qF2.2	chr3-102864579-107472486	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr3	97562644	97562644	TA	T	ENSMUST00000029730.4	1	ENSMUSG00000028089	FS	F/X	855	Chd1l	ENSMUST00000029730.4:c.2565del	ENSMUSP00000029730.4:p.Phe855LeufsTer67	H-2-Kb	9	31	0	LTYTTFPEV	NA	NetMHC	74.75	NA	NA	283	0.251	154.974	NA	NA	NA	74.75	NA	100	NA	209.947158	NA	249.6031145	SSC_p20	-0.114285714	0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.242	283	0	0	NA	3qF2.1	chr3-86786943-102854538	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr4	103143160	103143160	A	C	ENSMUST00000097945.9	1	ENSMUSG00000028522	missense	Q/H	233	Mier1	ENSMUST00000097945.9:c.699A>C	ENSMUSP00000095558.3:p.Gln233His	H-2-Kb	9	6	6	VGSMFHAEI	VGSMFQAEI	NetMHCpan	56.9	188.7	3.316	74	0.297	337.801	674.731	1.997	301.73	83.7	188.7	56.9	1210.904798	785.4345477	1047.731497	591.9022625	SSC_p20	0.5	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.307	74	0	0	NA	4qC6	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr3	153509458	153509458	T	C	ENSMUST00000200397.4	1	ENSMUSG00000052544	missense	I/V	20	St6galnac3	ENSMUST00000200397.4:c.58A>G	ENSMUSP00000143747.1:p.Ile20Val	H-2-Kb	9	4	8	VSFIALCVL	VSFIALCIL	NetMHCpan	76.8	80.4	1.047	52	0.231	115.737	102.269	0.884	98.83	105.84	80.4	76.8	105.7085218	125.6348137	138.4363053	134.9739632	SSC_p20	3.342857143	3.342857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.241	52	0	0	NA	3qH3	chr3-108571396-159913826	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr4	118734571	118734571	A	G	ENSMUST00000217522.2	3	ENSMUSG00000070820	missense	E/G	14	Olfr1339	ENSMUST00000217522.2:c.41A>G	ENSMUSP00000148988.1:p.Glu14Gly	H-2-Kb	9	7	5	SSVSGFILL	SSVSEFILL	NetMHC	114.79	78.01	0.68	93	0.312	211.811	154.118	0.728	78.01	114.79	132.4	180.9	175.8368925	242.7224795	277.4917016	308.4963287	SSC_p20	2.557142857	2.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.333	93	0	0	NA	4qD2.1	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr3	116891951	116891951	T	C	ENSMUST00000195905.4	5	ENSMUSG00000033386	missense	Y/H	324	Frrs1	ENSMUST00000195905.4:c.970T>C	ENSMUSP00000143255.1:p.Tyr324His	H-2-Kb	9	10	2	SHYIFFAEG	SYYIFFAEG	NetMHC	123.41	230.42	1.867	149	0.248	130.94	148.813	1.137	230.42	123.41	199.2	193	98.4260372	136.4928808	94.8964574	125.3862749	SSC_p20	0.957142857	0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.263	149	0	0	NA	3qG1	chr3-108571396-159913826	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr4	12053539	12053539	T	C	ENSMUST00000050686.9	1	ENSMUSG00000049488	missense	T/A	670	Tmem67	ENSMUST00000050686.9:c.2008A>G	ENSMUSP00000052644.3:p.Thr670Ala	H-2-Kb	9	6	6	VSIWRAYFV	VSIWRTYFV	NetMHC	175.82	192.24	1.093	185	0.384	276.18	242.071	0.876	192.24	175.82	214.3	199.9	269.8422814	352.4601324	280.0593007	390.1665199	SSC_p20	0.942857143	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.365	185	0	0	NA	4qA1	chr4-3172993-59912905	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr4	103143160	103143160	A	C	ENSMUST00000097945.9	1	ENSMUSG00000028522	missense	Q/H	233	Mier1	ENSMUST00000097945.9:c.699A>C	ENSMUSP00000095558.3:p.Gln233His	H-2-Kb	9	8	4	SMFHAEIPV	SMFQAEIPV	SMM	181.18	218.328	1.205	74	0.297	241.915	277.522	1.147	236.44	216.99	363	335.2	218.3282833	181.1798935	318.6031021	266.8394274	SSC_p20	0.714285714	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.307	74	0	0	NA	4qC6	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr4	87840915	87840915	CT	C	ENSMUST00000078090.11	1	ENSMUSG00000028496	FS	R/X	299	Mllt3	ENSMUST00000078090.11:c.895del	ENSMUSP00000077232.5:p.Arg299GlyfsTer19	H-2-Kb	9	14	0	VARRLYLKV	NA	NetMHCpan	193.3	NA	NA	73	0.205	273.128	NA	NA	NA	289.66	NA	193.3	NA	291.1454451	NA	256.5960697	SSC_p20	-0.342857143	0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.215	73	0	0	NA	4qC4	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr4	64007763	64007763	A	G	ENSMUST00000107377.9	1	ENSMUSG00000028364	missense	Y/H	927	Tnc	ENSMUST00000107377.9:c.2779T>C	ENSMUSP00000103000.3:p.Tyr927His	H-2-Kb	9	6	6	SYRIKHAPI	SYRIKYAPI	NetMHC	338.79	85	0.251	57	0.211	476.479	142.207	0.298	85	338.79	565.7	1778.7	146.9298381	514.1738673	137.4833165	438.783209	SSC_p20	-0.342857143	-0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.214	57	0	0	NA	4qC1	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr4	113004506	113004506	A	G	ENSMUST00000138966.8	1	ENSMUSG00000087194	missense	M/T	618	Skint6	ENSMUST00000138966.8:c.1853T>C	ENSMUSP00000121870.2:p.Met618Thr	H-2-Kb	9	10	2	STLLKKIGL	SMLLKKIGL	NetMHC	344.11	192.99	0.561	173	0.306	450.184	204.444	0.454	192.99	344.11	587.9	803.6	154.5645878	410.3080144	215.8986864	490.0608399	SSC_p20	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.3	173	0	0	NA	4qD1	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr4	32725960	32725960	CA	C	ENSMUST00000178134.1	5	ENSMUSG00000058006	FS	A/X	2626	Mdn1	ENSMUST00000178134.1:c.7880del	ENSMUSP00000136222.1:p.Asn2627ThrfsTer27	H-2-Kb	9	10	3	VATRHLFIL	NA	SMM	230.202	NA	NA	80	0.35	308.995	NA	NA	NA	418.19	NA	322.7	NA	230.202481	NA	295.2908568	SSC_p20	0.928571429	0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.355	80	0	0	NA	4qA5	chr4-3172993-59912905	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr4	46007511	46007511	A	C	ENSMUST00000107777.8	1	ENSMUSG00000035517	missense	E/A	521	Tdrd7	ENSMUST00000107777.8:c.1562A>C	ENSMUSP00000103406.2:p.Glu521Ala	H-2-Kb	9	11	1	AFYSKNPRV	EFYSKNPRV	SMM	292.489	1023.552	3.499	79	0.278	429.847	2150.851	5.004	3217.15	519.09	7027.5	1153.4	1023.552209	292.4893114	1084.551052	340.6042008	SSC_p20	-1.628571429	-0.928571429	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.288	79	0	0	NA	4qB1	chr4-3172993-59912905	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr5	8825617	8825617	A	G	ENSMUST00000009058.9	1	ENSMUSG00000028970	missense	I/V	597	Abcb1b	ENSMUST00000009058.9:c.1789A>G	ENSMUSP00000009058.5:p.Ile597Val	H-2-Db	9	3	9	STVRNADVV	STVRNADVI	NetMHC	16.07	6.96	0.433	270	0.17	110.844	45.687	0.412	6.96	16.07	11.1	21.9	90.28591422	214.101643	80.27309354	199.7882763	SSC_p20	0.414285714	0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.177	270	0	0	NA	5qA1	chr5-3344463-24257921	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr5	24477100	24477100	T	C	ENSMUST00000024123.8	1	ENSMUSG00000023353	missense	V/A	198	Agap3	ENSMUST00000024123.8:c.593T>C	ENSMUSP00000024123.4:p.Val198Ala	H-2-Db	9	10	2	FAFSLEDEI	FVFSLEDEI	NetMHC	85.78	1256.91	14.653	168	0.238	123.544	1036.389	8.389	1256.91	85.78	1654.5	193.2	815.8681887	127.5322436	763.0798752	119.5556211	SSC_p20	-0.028571429	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.242	168	0	0	NA	5qA3	chr5-24319705-37739562	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr4	127048748	127048748	A	G	ENSMUST00000106102.8	1	ENSMUSG00000043872	missense	F/L	616	Zmym1	ENSMUST00000106102.8:c.1846T>C	ENSMUSP00000101708.2:p.Phe616Leu	H-2-Db	9	8	4	CSLLNTVHV	CSLFNTVHV	NetMHCpan	65.9	115	1.745	116	0.276	134.513	212.264	1.578	172.4	100.13	115	65.9	252.1273737	168.8962473	297.5568825	191.2361536	SSC_p20	1.228571429	1.328571429	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.289	116	0	0	NA	4qD2.2	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr5	3571771	3571771	GA	G	ENSMUST00000008451.11	1	ENSMUSG00000008307	FS	K/X	7	1700109H08Rik	ENSMUST00000008451.11:c.25del	ENSMUSP00000008451.5:p.Met9TrpfsTer55	H-2-Db	9	31	0	FSIAWWDAL	NA	NetMHC	161.39	NA	NA	73	0.192	162.322	NA	NA	NA	161.39	NA	161.5	NA	195.7131469	NA	163.1435844	SSC_p20	0.942857143	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.196	73	0	0	NA	5qA1	chr5-3344463-24257921	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr4	128475742	128475742	A	C	ENSMUST00000184063.2	5	ENSMUSG00000028804	missense	E/A	1889	Csmd2	ENSMUST00000184063.2:c.5666A>C	ENSMUSP00000138958.2:p.Glu1889Ala	H-2-Db	9	9	3	VTAQNWDSL	VTEQNWDSL	NetMHCpan	100.1	1118	11.169	75	0.24	291.418	849.797	2.916	1567.14	189.63	1118	100.1	581.5941105	393.2058767	507.656557	415.4990164	SSC_p20	-0.942857143	-0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.246	75	0	0	NA	4qD2.2	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr5	63806698	63806698	A	T	ENSMUST00000159584.2	1	ENSMUSG00000090061	missense	K/N	1208	Nwd2	ENSMUST00000159584.2:c.3624A>T	ENSMUSP00000124712.1:p.Lys1208Asn	H-2-Db	9	7	5	ILICNALSI	ILICKALSI	NetMHCpan	141.1	7481.9	53.026	186	0.21	238.859	9795.44	41.009	18580.86	208.18	7481.9	141.1	8762.337965	269.537999	10828.54237	322.5299134	SSC_p20	1.828571429	2.485714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.217	186	0	0	NA	5qC3.1	chr5-37820990-87674558	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr5	3811343	3811343	A	G	ENSMUST00000080085.8	1	ENSMUSG00000000600	missense	H/R	148	Krit1	ENSMUST00000080085.8:c.443A>G	ENSMUSP00000078985.4:p.His148Arg	H-2-Kb	8	8	4	SSTRFATL	SSTHFATL	NetMHC	4.35	7.39	1.699	49	0.265	10.169	16.634	1.636	7.39	4.35	13.6	9.8	19.66708524	10.53755853	21.46545013	12.07090967	SSC_p20	0.242857143	0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.286	49	0	0	NA	5qA1	chr5-3344463-24257921	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr5	3571771	3571771	GA	G	ENSMUST00000008451.11	1	ENSMUSG00000008307	FS	K/X	7	1700109H08Rik	ENSMUST00000008451.11:c.25del	ENSMUSP00000008451.5:p.Met9TrpfsTer55	H-2-Kb	8	27	0	VSYDFSIA	NA	NetMHC	23.52	NA	NA	73	0.192	51.845	NA	NA	NA	23.52	NA	28.4	NA	75.29046857	NA	87.24489012	SSC_p20	0.385714286	0.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.196	73	0	0	NA	5qA1	chr5-3344463-24257921	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr5	9570282	9570282	T	A	ENSMUST00000004076.4	1	ENSMUSG00000003974	missense	I/F	321	Grm3	ENSMUST00000004076.4:c.961A>T	ENSMUSP00000004076.3:p.Ile321Phe	H-2-Kb	8	6	6	VAYGAFTL	VAYGAITL	NetMHCpan	19.3	68.9	3.57	145	0.186	58.79	101.622	1.729	80.29	29.73	68.9	19.3	122.9532464	87.8496428	161.3392375	112.3931906	SSC_p20	1.114285714	1.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.19	145	0	0	NA	5qA1	chr5-3344463-24257921	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr4	126832123	126832123	A	G	ENSMUST00000102607.9	1	ENSMUSG00000028830	missense	H/R	442	AU040320	ENSMUST00000102607.9:c.1325A>G	ENSMUSP00000099667.3:p.His442Arg	H-2-Kb	8	8	4	VQYRWEEL	VQYHWEEL	NetMHCpan	39.9	67.7	1.697	85	0.341	60.954	148.184	2.431	150.91	40.11	67.7	39.9	165.4778997	88.66250554	145.4587999	81.79749427	SSC_p20	-1.914285714	-1.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.345	85	0	0	NA	4qD2.2	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr5	66024963	66024963	GT	G	ENSMUST00000201544.3	5	ENSMUSG00000070780	FS	K/X	442	Rbm47	ENSMUST00000201544.3:c.1326del	ENSMUSP00000144122.1:p.Lys442AsnfsTer25	H-2-Kb	8	5	7	VNPVAINL	VNPVAIKP	NetMHC	80.3	32733.75	407.643	109	0.037	195.342	23416.367	119.874	32733.75	80.3	25661.8	236.4	15196.37493	155.8619122	21170.93311	234.8226582	SSC_p20	0.814285714	0.871428571	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Vardict	2	0.047	109	0	0	NA	5qC3.1	chr5-37820990-87674558	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.277148893	sgMsh2	cell line
chr5	24701418	24701418	A	G	ENSMUST00000197407.4	1	ENSMUSG00000028954	missense	Y/C	314	Nub1	ENSMUST00000197407.4:c.941A>G	ENSMUSP00000143657.1:p.Tyr314Cys	H-2-Kb	8	7	5	IVWCCFRL	IVWCYFRL	SMMPMBEC	57.908	5.926	0.102	115	0.113	94.658	8.722	0.092	9.74	103.07	13.1	138	7.704420888	86.24620612	5.92570463	57.90819124	SSC_p20	1.485714286	1.585714286	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.117	115	0	0	NA	5qA3	chr5-24319705-37739562	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.68992384	sgMsh2	cell line
chr5	25250157	25250157	CT	C	ENSMUST00000045737.13	1	ENSMUSG00000038072	FS	F/X	164	Galnt11	ENSMUST00000045737.13:c.493del	ENSMUSP00000036240.7:p.Ser165LeufsTer34	H-2-Kb	8	10	3	AFLPYCGL	NA	SMM	85.652	NA	NA	99	0.172	110.98	NA	NA	NA	104.54	NA	197.9	NA	85.65249141	NA	117.4194387	SSC_p20	1.371428571	1.371428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.164	99	0	0	NA	5qA3	chr5-24319705-37739562	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.967072734	sgMsh2	cell line
chr5	3571771	3571771	GA	G	ENSMUST00000008451.11	1	ENSMUSG00000008307	FS	K/X	7	1700109H08Rik	ENSMUST00000008451.11:c.25del	ENSMUSP00000008451.5:p.Met9TrpfsTer55	H-2-Kb	8	33	0	IAWWDALL	NA	NetMHC	126.14	NA	NA	73	0.192	143.498	NA	NA	NA	126.14	NA	200.3	NA	160.597951	NA	126.3979412	SSC_p20	0.842857143	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.196	73	0	0	NA	5qA1	chr5-3344463-24257921	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr5	25250157	25250157	CT	C	ENSMUST00000045737.13	1	ENSMUSG00000038072	FS	F/X	164	Galnt11	ENSMUST00000045737.13:c.493del	ENSMUSP00000036240.7:p.Ser165LeufsTer34	H-2-Kb	8	33	0	SSLWMTAV	NA	NetMHC	131.78	NA	NA	99	0.172	224.628	NA	NA	NA	131.78	NA	202.8	NA	246.456343	NA	314.5864409	SSC_p20	1.328571429	1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.164	99	0	0	NA	5qA3	chr5-24319705-37739562	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.967072734	sgMsh2	cell line
chr5	24477100	24477100	T	C	ENSMUST00000024123.8	1	ENSMUSG00000023353	missense	V/A	198	Agap3	ENSMUST00000024123.8:c.593T>C	ENSMUSP00000024123.4:p.Val198Ala	H-2-Kb	8	8	4	VVFAFSLE	VVFVFSLE	SMM	34.494	33.093	0.959	168	0.238	112.342	92.342	0.822	150.11	183.97	512.5	437.1	33.09329418	34.49371732	34.57323355	40.71364636	SSC_p20	1.585714286	2.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.242	168	0	0	NA	5qA3	chr5-24319705-37739562	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr5	25250157	25250157	CT	C	ENSMUST00000045737.13	1	ENSMUSG00000038072	FS	F/X	164	Galnt11	ENSMUST00000045737.13:c.493del	ENSMUSP00000036240.7:p.Ser165LeufsTer34	H-2-Kb	8	28	0	TFFMRSSL	NA	NetMHCpan	127.7	NA	NA	99	0.172	184.578	NA	NA	NA	189.79	NA	127.7	NA	220.6683258	NA	179.3659491	SSC_p20	0.742857143	0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.164	99	0	0	NA	5qA3	chr5-24319705-37739562	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.967072734	sgMsh2	cell line
chr4	144565004	144565004	A	G	ENSMUST00000105748.1	5	ENSMUSG00000078506	missense	M/T	44	Aadacl4fm2	ENSMUST00000105748.1:c.131T>C	ENSMUSP00000101374.1:p.Met44Thr	H-2-Kb	8	11	1	TLHYFFQL	MLHYFFQL	NetMHCpan	42.3	48.8	1.154	114	0.404	175.549	130.503	0.743	218.44	221.41	48.8	42.3	150.9176382	211.2224132	110.0880046	139.8749679	SSC_p20	0.742857143	0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.391	114	0	0	NA	4qE1	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr5	57720612	57720612	T	C	ENSMUST00000191837.5	1	ENSMUSG00000029108	missense	V/A	503	Pcdh7	ENSMUST00000191837.5:c.1508T>C	ENSMUSP00000142319.1:p.Val503Ala	H-2-Kb	8	5	7	TTREFNAV	TTREFNVV	SMM	170.506	401.55	2.355	105	0.219	273.109	916.574	3.356	1915.54	307.03	1295.2	590.7	401.5503419	170.5061311	537.9476318	239.1883374	SSC_p20	-0.485714286	-0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.216	105	0	0	NA	5qC1	chr5-37820990-87674558	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr5	25250157	25250157	CT	C	ENSMUST00000045737.13	1	ENSMUSG00000038072	FS	F/X	164	Galnt11	ENSMUST00000045737.13:c.493del	ENSMUSP00000036240.7:p.Ser165LeufsTer34	H-2-Kb	8	5	8	CFYNEAFL	CFYNEAFS	SMM	121.266	1605.98	13.243	99	0.172	255.667	7045.935	27.559	16105.66	361.11	11383.3	790.1	1605.97951	121.2662646	2708.569601	150.2242346	SSC_p20	0.414285714	0.414285714	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.164	99	0	0	NA	5qA3	chr5-24319705-37739562	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.967072734	sgMsh2	cell line
chr4	153386480	153386480	A	G	ENSMUST00000105646.2	5	ENSMUSG00000039546	missense	V/A	290	Ajap1	ENSMUST00000105646.2:c.869T>C	ENSMUSP00000101271.1:p.Val290Ala	H-2-Kb	8	6	6	IITITASL	IITITVSL	SMMPMBEC	287.568	829.354	2.884	90	0.289	381.064	1094.846	2.873	2140.69	471.23	1348.8	604.6	840.8915726	290.8975074	829.3541077	287.5676312	SSC_p20	1.771428571	1.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.315	90	0	0	NA	4qE2	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr4	149469049	149469049	T	C	ENSMUST00000105693.1	1	ENSMUSG00000028992	missense	D/G	202	Nmnat1	ENSMUST00000105693.1:c.605A>G	ENSMUSP00000101318.1:p.Asp202Gly	H-2-Kb	8	6	6	FIYESGVL	FIYESDVL	SMM	209.768	492.879	2.35	103	0.379	400.327	1446.197	3.613	2225.22	505.71	2076.3	573.6	492.8786429	209.7683683	816.0936526	294.9442949	SSC_p20	0.928571429	0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.38	103	0	0	NA	4qE2	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr4	144564983	144564983	A	G	ENSMUST00000105748.1	5	ENSMUSG00000078506	missense	L/P	51	Aadacl4fm2	ENSMUST00000105748.1:c.152T>C	ENSMUSP00000101374.1:p.Leu51Pro	H-2-Kb	8	5	7	LHYFFQPT	LHYFFQLT	NetMHCpan	236.5	344.9	1.458	112	0.25	357.167	962.247	2.694	1565.05	531.16	344.9	236.5	1075.820957	406.2000757	848.6722465	308.1342684	SSC_p20	-0.671428571	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.245	112	0	0	NA	4qE1	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr4	148087939	148087939	T	A	ENSMUST00000030865.8	1	ENSMUSG00000029007	missense	E/V	2	Agtrap	ENSMUST00000030865.8:c.5A>T	ENSMUSP00000030865.8:p.Glu2Val	H-2-Kb	8	1	2	MVLPAVNL	MELPAVNL	SMM	313.863	1583.945	5.047	24	0.292	376.958	6234.554	16.539	13905.31	610.01	10327.5	331.5	1583.944645	313.8629122	2141.608096	422.4156501	SSC_p20	1.814285714	1.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.381	24	0	0	NA	4qE2	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr5	72763770	72763770	G	A	ENSMUST00000071944.12	1	ENSMUSG00000029217	missense	H/Y	421	Tec	ENSMUST00000071944.12:c.1261C>T	ENSMUSP00000071836.6:p.His421Tyr	H-2-Kb	8	7	5	MKLTYPKL	MKLTHPKL	SMM	206.414	799.356	3.873	51	0.294	458.287	2856.211	6.232	5962.33	689.2	4729	793.1	799.3555598	206.414404	983.422182	227.3735801	SSC_p20	-0.542857143	-0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.306	51	0	0	NA	5qC3.2	chr5-37820990-87674558	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr5	3571771	3571771	GA	G	ENSMUST00000008451.11	1	ENSMUSG00000008307	FS	K/X	7	1700109H08Rik	ENSMUST00000008451.11:c.25del	ENSMUSP00000008451.5:p.Met9TrpfsTer55	H-2-Kb	9	27	0	VSYDFSIAW	NA	NetMHC	37.79	NA	NA	73	0.192	103.487	NA	NA	NA	37.79	NA	151.3	NA	106.6866308	NA	100.2882377	SSC_p20	0.371428571	0.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.196	73	0	0	NA	5qA1	chr5-3344463-24257921	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr5	69559600	69559600	G	T	ENSMUST00000087228.10	1	ENSMUSG00000029208	missense	Q/H	168	Guf1	ENSMUST00000087228.10:c.504G>T	ENSMUSP00000084480.4:p.Gln168His	H-2-Kb	9	4	8	FFLAFEAHL	FFLAFEAQL	NetMHC	82.2	123.13	1.498	183	0.333	229.444	263.489	1.148	123.13	82.2	352.8	236.5	268.6024688	222.3873092	258.3747087	273.6843727	SSC_p20	1.042857143	1.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.323	183	0	0	NA	5qC3.1	chr5-37820990-87674558	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr5	72763770	72763770	G	A	ENSMUST00000071944.12	1	ENSMUSG00000029217	missense	H/Y	421	Tec	ENSMUST00000071944.12:c.1261C>T	ENSMUSP00000071836.6:p.His421Tyr	H-2-Kb	9	9	3	LTYPKLVQL	LTHPKLVQL	NetMHCpan	48.6	720.5	14.825	51	0.294	86.478	707.42	8.18	694.34	82.54	720.5	48.6	726.289892	127.6762152	491.1905468	90.41698059	SSC_p20	0.214285714	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.306	51	0	0	NA	5qC3.2	chr5-37820990-87674558	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr4	144565004	144565004	A	G	ENSMUST00000105748.1	5	ENSMUSG00000078506	missense	M/T	44	Aadacl4fm2	ENSMUST00000105748.1:c.131T>C	ENSMUSP00000101374.1:p.Met44Thr	H-2-Kb	9	10	2	HTLHYFFQL	HMLHYFFQL	NetMHCpan	47	60.3	1.283	114	0.404	134.804	68.981	0.512	115.84	115.35	60.3	47	70.00192775	185.8275068	67.95947262	154.2588183	SSC_p20	0.742857143	0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.391	114	0	0	NA	4qE1	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr5	66024963	66024963	GT	G	ENSMUST00000201544.3	5	ENSMUSG00000070780	FS	K/X	442	Rbm47	ENSMUST00000201544.3:c.1326del	ENSMUSP00000144122.1:p.Lys442AsnfsTer25	H-2-Kb	9	10	2	INLAQWPSL	NA	NetMHCpan	86.6	NA	NA	109	0.037	168.945	NA	NA	NA	115.43	NA	86.6	NA	234.4822647	NA	222.4590099	SSC_p20	0.371428571	0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.047	109	0	0	NA	5qC3.1	chr5-37820990-87674558	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.277148893	sgMsh2	cell line
chr4	144564983	144564983	A	G	ENSMUST00000105748.1	5	ENSMUSG00000078506	missense	L/P	51	Aadacl4fm2	ENSMUST00000105748.1:c.152T>C	ENSMUSP00000101374.1:p.Leu51Pro	H-2-Kb	9	5	7	LHYFFQPTI	LHYFFQLTI	NetMHCpan	56.9	58	1.019	112	0.25	189.744	275.225	1.451	289.32	151.92	58	56.9	273.5961615	227.567375	276.8534884	237.82089	SSC_p20	0.428571429	0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.245	112	0	0	NA	4qE1	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr4	126832123	126832123	A	G	ENSMUST00000102607.9	1	ENSMUSG00000028830	missense	H/R	442	AU040320	ENSMUST00000102607.9:c.1325A>G	ENSMUSP00000099667.3:p.His442Arg	H-2-Kb	9	7	5	IVQYRWEEL	IVQYHWEEL	NetMHC	174.25	167.19	0.959	85	0.341	278.449	296.503	1.065	167.19	174.25	354.2	445.8	308.3968972	297.9270937	284.6098982	258.9703239	SSC_p20	-1.914285714	-0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.345	85	0	0	NA	4qD2.2	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr5	3571771	3571771	GA	G	ENSMUST00000008451.11	1	ENSMUSG00000008307	FS	K/X	7	1700109H08Rik	ENSMUST00000008451.11:c.25del	ENSMUSP00000008451.5:p.Met9TrpfsTer55	H-2-Kb	9	31	0	FSIAWWDAL	NA	NetMHC	179.9	NA	NA	73	0.192	294.902	NA	NA	NA	179.9	NA	271.2	NA	375.9326101	NA	318.6031021	SSC_p20	0.942857143	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.196	73	0	0	NA	5qA1	chr5-3344463-24257921	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr5	3571771	3571771	GA	G	ENSMUST00000008451.11	1	ENSMUSG00000008307	FS	K/X	7	1700109H08Rik	ENSMUST00000008451.11:c.25del	ENSMUSP00000008451.5:p.Met9TrpfsTer55	H-2-Kb	9	32	0	SIAWWDALL	NA	NetMHC	227.13	NA	NA	73	0.192	356.707	NA	NA	NA	227.13	NA	500	NA	321.4474612	NA	391.9674468	SSC_p20	0.842857143	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.196	73	0	0	NA	5qA1	chr5-3344463-24257921	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr5	25250157	25250157	CT	C	ENSMUST00000045737.13	1	ENSMUSG00000038072	FS	F/X	164	Galnt11	ENSMUST00000045737.13:c.493del	ENSMUSP00000036240.7:p.Ser165LeufsTer34	H-2-Kb	9	9	4	EAFLPYCGL	NA	NetMHC	233.26	NA	NA	99	0.172	265.834	NA	NA	NA	233.26	NA	286.7	NA	244.968363	NA	332.8511027	SSC_p20	1.371428571	1.371428571	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.164	99	0	0	NA	5qA3	chr5-24319705-37739562	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.967072734	sgMsh2	cell line
chr5	25250157	25250157	CT	C	ENSMUST00000045737.13	1	ENSMUSG00000038072	FS	F/X	164	Galnt11	ENSMUST00000045737.13:c.493del	ENSMUSP00000036240.7:p.Ser165LeufsTer34	H-2-Kb	9	4	9	ICFYNEAFL	ICFYNEAFS	SMMPMBEC	280.705	1549.708	5.521	99	0.172	347.745	5070.862	14.582	8578.18	304.99	9444.6	390.5	1563.543614	415.0591573	1549.708446	280.704904	SSC_p20	0.414285714	0.471428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.164	99	0	0	NA	5qA3	chr5-24319705-37739562	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.967072734	sgMsh2	cell line
chr5	72763770	72763770	G	A	ENSMUST00000071944.12	1	ENSMUSG00000029217	missense	H/Y	421	Tec	ENSMUST00000071944.12:c.1261C>T	ENSMUSP00000071836.6:p.His421Tyr	H-2-Kb	9	6	6	MMKLTYPKL	MMKLTHPKL	SMM	238.292	833.892	3.499	51	0.294	260.752	981.296	3.763	1435.03	314.65	1128.7	271.9	833.8923698	238.292295	796.6177885	249.6031145	SSC_p20	-0.542857143	0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.306	51	0	0	NA	5qC3.2	chr5-37820990-87674558	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr5	127604164	127604164	T	G	ENSMUST00000031367.14	1	ENSMUSG00000029416	missense	S/R	347	Slc15a4	ENSMUST00000031367.14:c.1039A>C	ENSMUSP00000031367.8:p.Ser347Arg	H-2-Kb	8	5	7	TTYALQRL	TTYALQSL	NetMHC	18.7	32.38	1.732	86	0.256	27.243	45.615	1.674	32.38	18.7	26.6	20.7	58.84912366	33.78625068	71.57148034	39.78689062	SSC_p20	-0.085714286	-0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	86	0	0	NA	5qG1.2	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr5	151561858	151561858	T	C	ENSMUST00000165928.3	5	ENSMUSG00000091794	missense	S/G	724	Vmn2r18	ENSMUST00000165928.3:c.2170A>G	ENSMUSP00000127506.1:p.Ser724Gly	H-2-Kb	8	5	7	SMVVFCGV	SMVVFCSV	NetMHC	46.03	69.18	1.503	403	0.221	157.77	147.604	0.936	69.18	46.03	69.4	98.4	230.0064421	222.1979255	225.8083514	217.1400833	SSC_p20	2.771428571	2.771428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	403	0	0	NA	5qG3	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr5	135911218	135911218	GC	G	ENSMUST00000055808.5	1	ENSMUSG00000051391	FS	G/X	174	Ywhag	ENSMUST00000055808.5:c.521del	ENSMUSP00000051223.5:p.Gly174AlafsTer38	H-2-Kb	8	14	0	STTRFSTM	NA	NetMHC	50.97	NA	NA	90	0.333	122.847	NA	NA	NA	50.97	NA	87.3	NA	158.3944645	NA	187.8192059	SSC_p20	-0.385714286	-0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.341	90	0	0	NA	5qG2	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr5	101917543	101917543	G	A	ENSMUST00000053177.13	1	ENSMUSG00000043940	missense	P/L	1253	Wdfy3	ENSMUST00000053177.13:c.3758C>T	ENSMUSP00000052607.7:p.Pro1253Leu	H-2-Kb	8	4	8	YAYVGTPL	YAYVGTPP	NetMHCpan	56.5	8260.8	146.209	63	0.302	103.844	6425.016	61.872	21265.76	61.22	8260.8	56.5	4589.231861	189.5570756	3799.618556	146.4670721	SSC_p20	0.828571429	0.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.335	63	0	0	NA	5qE5	chr5-87678697-108786463	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr5	83294647	83294647	A	G	ENSMUST00000053543.10	1	ENSMUSG00000049537	missense	I/T	193	Tecrl	ENSMUST00000053543.10:c.578T>C	ENSMUSP00000062122.4:p.Ile193Thr	H-2-Kb	8	8	4	IHYTRLLL	IHYIRLLL	NetMHCpan	57.4	46.9	0.817	60	0.25	167.5	176.014	1.051	96.91	95.26	46.9	57.4	255.1173529	239.7397234	272.1071791	245.8895091	SSC_p20	0.242857143	0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	60	0	0	NA	5qE1	chr5-37820990-87674558	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr5	105606595	105606595	A	G	ENSMUST00000067924.12	1	ENSMUSG00000054720	missense	T/A	79	Lrrc8c	ENSMUST00000067924.12:c.235A>G	ENSMUSP00000066015.6:p.Thr79Ala	H-2-Kb	8	6	6	AVISTAPL	AVISTTPL	NetMHC	116.95	543.07	4.644	168	0.518	194.861	538.657	2.764	543.07	116.95	441.1	206.6	712.4263926	249.310173	534.2444264	183.1217795	SSC_p20	1.6	1.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.51	168	0	0	NA	5qE5	chr5-87678697-108786463	5	3	2	0.9	5.307106465	RARE KARYOTYPE	3	1	sgMsh2	cell line
chr5	123803679	123803679	GA	G	ENSMUST00000031366.11	1	ENSMUSG00000029414	FS	E/X	1812	Kntc1	ENSMUST00000031366.11:c.5440del	ENSMUSP00000031366.7:p.Ile1814SerfsTer67	H-2-Kb	8	34	0	SSLSWKRM	NA	NetMHC	177.79	NA	NA	206	0.044	247.473	NA	NA	NA	177.79	NA	350.6	NA	277.8049629	NA	217.1400833	SSC_p20	-0.742857143	-0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.041	206	0	0	NA	5qF	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.241768183	sgMsh2	cell line
chr5	123803679	123803679	GA	G	ENSMUST00000031366.11	1	ENSMUSG00000029414	FS	E/X	1812	Kntc1	ENSMUST00000031366.11:c.5440del	ENSMUSP00000031366.7:p.Ile1814SerfsTer67	H-2-Kb	8	49	0	ISSRLVLL	NA	NetMHCpan	272.5	NA	NA	206	0.044	293.225	NA	NA	NA	294.21	NA	272.5	NA	308.1342684	NA	292.2402293	SSC_p20	1.357142857	1.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.041	206	0	0	NA	5qF	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.241768183	sgMsh2	cell line
chr5	123998901	123998901	A	C	ENSMUST00000000939.14	1	ENSMUSG00000000915	missense	D/A	644	Hip1r	ENSMUST00000000939.14:c.1931A>C	ENSMUSP00000000939.8:p.Asp644Ala	H-2-Kb	8	6	6	VSKLDAPL	VSKLDDPL	SMMPMBEC	117.961	952.226	8.072	39	0.282	298.242	3760.799	12.61	6496.56	448.32	6794	857.5	1025.038081	148.1630809	952.2259222	117.9614222	SSC_p20	-0.057142857	3.17E-17	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.315	39	0	0	NA	5qF	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr5	87694728	87694728	C	T	ENSMUST00000197422.4	1	ENSMUSG00000063157	missense	A/T	147	Csn2	ENSMUST00000197422.4:c.439G>A	ENSMUSP00000143341.1:p.Ala147Thr	H-2-Kb	8	9	3	SLTSLANL	SLASLANL	SMM	381.716	341.775	0.895	132	0.333	487.6	375.638	0.77	720.32	664.91	348.8	569	341.7747702	381.7156799	402.476011	406.2000757	SSC_p20	1.171428571	1.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.328	132	0	0	NA	5qE1	chr5-87678697-108786463	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr5	96700257	96700257	CG	C	ENSMUST00000036019.4	1	ENSMUSG00000034687	FS	S/X	1775	Fras1	ENSMUST00000036019.4:c.5329del	ENSMUSP00000043250.4:p.Asp1777IlefsTer100	H-2-Kb	8	72	0	TSLPLLTL	NA	NetMHCpan	350.5	NA	NA	100	0.27	428.931	NA	NA	NA	669.74	NA	350.5	NA	381.7156799	NA	476.1458462	SSC_p20	1.728571429	1.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.271	100	0	0	NA	5qE3	chr5-87678697-108786463	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr5	130822927	130822927	T	G	ENSMUST00000086029.9	1	ENSMUSG00000060371	missense	F/V	186	Caln1	ENSMUST00000086029.9:c.556T>G	ENSMUSP00000083193.3:p.Phe186Val	H-2-Kb	8	4	8	KHILYHAV	KHILYHAF	SMM	368.757	1677.799	4.55	69	0.145	449.23	1574.985	3.506	1654.63	678.14	787	467.2	1677.799266	368.7567681	1495.34017	431.2608157	SSC_p20	0.942857143	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.162	69	0	0	NA	5qG2	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.955279164	sgMsh2	cell line
chr5	137618832	137618832	TC	T	ENSMUST00000031732.13	1	ENSMUSG00000089984	FS	G/X	331	Fbxo24	ENSMUST00000031732.13:c.992del	ENSMUSP00000031732.7:p.Gly331GlufsTer52	H-2-Kb	9	24	0	ISLGPFKPL	NA	NetMHC	32.37	NA	NA	36	0.222	91.596	NA	NA	NA	32.37	NA	46.7	NA	136.4928808	NA	155.6861575	SSC_p20	0.414285714	0.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.236	36	0	0	NA	5qG2	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr5	116014936	116014936	T	C	ENSMUST00000031486.13	1	ENSMUSG00000029513	missense	H/R	238	Prkab1	ENSMUST00000031486.13:c.713A>G	ENSMUSP00000031486.7:p.His238Arg	H-2-Kb	9	7	5	VMLNRLYAL	VMLNHLYAL	NetMHC	35.59	32.6	0.916	280	0.129	46.64	43.284	0.928	32.6	35.59	42.4	56.3	44.16823044	42.66875784	55.62243536	50.61159219	SSC_p20	0.557142857	0.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.14	280	0	0	NA	5qF	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.825549895	sgMsh2	cell line
chr5	129595427	129595427	T	G	ENSMUST00000031390.9	1	ENSMUSG00000029436	missense	S/A	148	Mmp17	ENSMUST00000031390.9:c.442T>G	ENSMUSP00000031390.8:p.Ser148Ala	H-2-Kb	9	5	7	RTFPRDAPL	RTFPRDSPL	NetMHC	69.85	178.55	2.556	114	0.316	126.8	193.56	1.527	178.55	69.85	126.7	77.3	219.8416627	205.1681772	208.5691158	176.2990613	SSC_p20	-0.4	-0.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.323	114	0	0	NA	5qG1.3	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr5	135911218	135911218	GC	G	ENSMUST00000055808.5	1	ENSMUSG00000051391	FS	G/X	174	Ywhag	ENSMUST00000055808.5:c.521del	ENSMUSP00000051223.5:p.Gly174AlafsTer38	H-2-Kb	9	13	0	RSTTRFSTM	NA	NetMHC	134.8	NA	NA	90	0.333	291.462	NA	NA	NA	134.8	NA	218.8	NA	382.9217191	NA	364.1245828	SSC_p20	-0.385714286	-0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.341	90	0	0	NA	5qG2	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr5	104968246	104968246	A	G	ENSMUST00000031239.12	1	ENSMUSG00000029299	missense	S/P	241	Abcg3	ENSMUST00000031239.12:c.721T>C	ENSMUSP00000031239.6:p.Ser241Pro	H-2-Kb	9	11	1	PIFKFFDSL	SIFKFFDSL	SMM	90.805	37.507	0.413	97	0.206	108.309	21.983	0.203	6.46	139.94	5	106.4	37.50679891	90.8050496	43.17675507	110.2173589	SSC_p20	0.571428571	0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.223	97	0	0	NA	5qE5	chr5-87678697-108786463	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr5	122461781	122461781	GC	G	ENSMUST00000031423.9	1	ENSMUSG00000029467	FS	A/X	516	Atp2a2	ENSMUST00000031423.9:c.1546del	ENSMUSP00000031423.8:p.Ala516LeufsTer21	H-2-Kb	9	3	9	MSKMFVKGL	MSKMFVKGA	NetMHCpan	152.4	3500.5	22.969	166	0.163	418.932	5998.587	14.319	7702.15	182.85	3500.5	152.4	6936.014622	772.8763178	5061.159219	655.0131214	SSC_p20	0.642857143	0.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.164	166	0	0	NA	5qF	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.967072734	sgMsh2	cell line
chr5	83294647	83294647	A	G	ENSMUST00000053543.10	1	ENSMUSG00000049537	missense	I/T	193	Tecrl	ENSMUST00000053543.10:c.578T>C	ENSMUSP00000062122.4:p.Ile193Thr	H-2-Kb	9	5	7	CHCIHYTRL	CHCIHYIRL	NetMHC	205.21	311.25	1.517	60	0.25	244.76	304.589	1.244	311.25	205.21	675.9	458.8	297.9270937	281.9096874	228.165512	207.6108278	SSC_p20	0.157142857	0.157142857	TRUE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	60	0	0	NA	5qE1	chr5-37820990-87674558	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr5	137758482	137758482	TG	T	ENSMUST00000110985.1	2	ENSMUSG00000029723	FS	L/X	57	Tsc22d4	ENSMUST00000110985.1:c.177del	ENSMUSP00000106613.1:p.Pro60GlnfsTer18	H-2-Kb	9	22	0	VGWTKAFSL	NA	NetMHCpan	103.3	NA	NA	136	0.228	321.493	NA	NA	NA	216.16	NA	103.3	NA	472.1826226	NA	426.8251484	SSC_p20	0.3	0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.236	136	0	0	NA	5qG2	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr5	96700257	96700257	CG	C	ENSMUST00000036019.4	1	ENSMUSG00000034687	FS	S/X	1775	Fras1	ENSMUST00000036019.4:c.5329del	ENSMUSP00000043250.4:p.Asp1777IlefsTer100	H-2-Kb	9	102	0	TTFRTTLSL	NA	NetMHCpan	137.2	NA	NA	100	0.27	402.251	NA	NA	NA	245.89	NA	137.2	NA	558.6116644	NA	616.9500447	SSC_p20	0.528571429	0.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.271	100	0	0	NA	5qE3	chr5-87678697-108786463	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr5	90606874	90606874	A	G	ENSMUST00000031317.9	5	ENSMUSG00000029370	missense	S/P	195	Rassf6	ENSMUST00000031317.9:c.583T>C	ENSMUSP00000031317.6:p.Ser195Pro	H-2-Kb	9	4	8	HVYDHETPI	HVYDHETSI	SMM	221.876	386.465	1.742	112	0.366	421.609	748.334	1.775	1303.8	592.79	1059.9	587.8	386.4648502	221.8758325	436.7671833	255.4171179	SSC_p20	-1.328571429	-1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.357	112	0	0	NA	5qE1	chr5-87678697-108786463	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr5	121604243	121604243	AG	A	ENSMUST00000131338.1	1	ENSMUSG00000042647	FS	P/X	91	Acad12	ENSMUST00000131338.1:c.271del	ENSMUSP00000121904.1:p.Pro91LeufsTer5	H-2-Kb	9	3	9	LMKTRVSPL	LMKTRVSPP	SMMPMBEC	207.611	1528.446	7.362	112	0.205	477.382	9492.673	19.885	23308.49	654.08	17456.9	696.6	1387.107117	300.6837791	1528.445649	207.6108278	SSC_p20	-0.5	-3.17E-17	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.207	112	0	0	NA	5qF	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr6	57600007	57600007	T	C	ENSMUST00000031817.9	1	ENSMUSG00000029798	missense	L/P	235	Herc6	ENSMUST00000031817.9:c.704T>C	ENSMUSP00000031817.8:p.Leu235Pro	H-2-Db	9	6	6	GALKNPSVI	GALKNLSVI	NetMHC	13.46	7.99	0.594	166	0.133	47.099	27.26	0.579	7.99	13.46	16.8	37.5	48.2636319	70.24574131	37.71985373	56.6982951	SSC_p20	0.385714286	0.385714286	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.142	166	0	0	NA	6qB3	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.837343464	sgMsh2	cell line
chr6	57432499	57432499	A	T	ENSMUST00000227909.1	NA	ENSMUSG00000115253	missense	Y/F	270	Vmn1r20	ENSMUST00000227909.1:c.809A>T	ENSMUSP00000153815.1:p.Tyr270Phe	H-2-Db	9	11	1	FAYPTISPL	YAYPTISPL	NetMHCpan	195.9	160.5	0.819	422	0.166	491.745	460.71	0.937	318.07	309.63	160.5	195.9	617.4758832	712.2295691	603.3509488	673.8605002	SSC_p20	0.328571429	0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.167	422	0	0	NA	6qB3	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	0.984763089	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	8	4	8	VLVSYTRL	VLVSYTRI	NetMHC	19.39	171.38	8.839	247	0.174	31.763	209.772	6.604	171.38	19.39	99.5	20.3	348.1288376	53.67103866	248.1646968	43.22549746	SSC_p20	0.642857143	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.176	247	0	0	NA	6qB2.1	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr6	8176324	8176324	A	G	ENSMUST00000115537.1	1	ENSMUSG00000068794	missense	L/P	11	Col28a1	ENSMUST00000115537.1:c.32T>C	ENSMUSP00000111199.1:p.Leu11Pro	H-2-Kb	8	6	6	VAFCLPLL	VAFCLLLL	NetMHCpan	26.9	44.9	1.669	131	0.176	50.725	74.795	1.475	79	38.97	44.9	26.9	70.58948282	62.47985313	88.05215715	80.11982647	SSC_p20	2.414285714	2.471428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.179	131	0	0	NA	6qA1	chr6-3373003-28261057	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	8	6	6	VSYTRLLV	VSYTRILV	NetMHCpan	35.2	39.9	1.134	247	0.174	94.957	84.621	0.891	32.04	39.69	39.9	35.2	129.3421274	150.2242346	135.1263357	158.7596015	SSC_p20	0.642857143	0.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.176	247	0	0	NA	6qB2.1	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr6	42744168	42744168	C	A	ENSMUST00000213997.1	5	ENSMUSG00000095831	missense	L/I	44	Olfr453	ENSMUST00000213997.1:c.130C>A	ENSMUSP00000150467.1:p.Leu44Ile	H-2-Kb	8	11	1	IIIVLIRL	LIIVLIRL	NetMHC	48.08	340.51	7.082	380	0.15	60.133	318.749	5.301	340.51	48.08	796.9	125.2	296.9887511	62.62388407	245.8895091	57.64212727	SSC_p20	2.971428571	3.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.156	380	0	0	NA	6qB2.1	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.919898454	sgMsh2	cell line
chr6	57432499	57432499	A	T	ENSMUST00000227909.1	NA	ENSMUSG00000115253	missense	Y/F	270	Vmn1r20	ENSMUST00000227909.1:c.809A>T	ENSMUSP00000153815.1:p.Tyr270Phe	H-2-Kb	8	9	3	LMFAYPTI	LMYAYPTI	NetMHCpan	23.5	18.4	0.783	422	0.166	117.837	79.517	0.675	27.59	68.28	18.4	23.5	140.5206015	189.5570756	131.4437679	167.3940435	SSC_p20	1.057142857	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.167	422	0	0	NA	6qB3	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	0.984763089	sgMsh2	cell line
chr6	73083103	73083103	G	T	ENSMUST00000064948.12	5	ENSMUSG00000052861	missense	L/I	2833	Dnah6	ENSMUST00000064948.12:c.8497C>A	ENSMUSP00000068758.6:p.Leu2833Ile	H-2-Kb	8	8	4	SNFIRRLL	SNFLRRLL	NetMHCpan	34.4	28.7	0.834	152	0.145	123.623	98.051	0.793	56.87	79.08	28.7	34.4	139.2323008	168.1666993	154.7889663	195.3169797	SSC_p20	0.342857143	0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.147	152	0	0	NA	6qC1	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.866827389	sgMsh2	cell line
chr6	57210453	57210453	T	C	ENSMUST00000227421.1	NA	ENSMUSG00000064259	missense	M/T	199	Vmn1r13	ENSMUST00000227421.1:c.596T>C	ENSMUSP00000154429.1:p.Met199Thr	H-2-Kb	8	8	4	SAYTVIIL	SAYMVIIL	NetMHC	115.95	94.02	0.811	870	0.116	153.083	167.312	1.093	94.02	115.95	126.3	126.8	208.324333	179.3659491	261.6616044	268.9923939	SSC_p20	2.4	2.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.117	870	0	0	NA	6qB3	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.68992384	sgMsh2	cell line
chr6	58215263	58215263	A	G	ENSMUST00000228530.1	NA	ENSMUSG00000071428	missense	V/A	252	Vmn1r27	ENSMUST00000228530.1:c.755T>C	ENSMUSP00000154236.1:p.Val252Ala	H-2-Kb	8	6	6	ISTTSALL	ISTTSVLL	NetMHC	139.85	694.59	4.967	571	0.012	169.914	612.578	3.605	694.59	139.85	1215	484.7	450.5468939	155.8619122	530.5667136	183.9670312	SSC_p20	0.914285714	1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.013	571	0	0	NA	6qB3	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.076658204	sgMsh2	cell line
chr6	104774501	104774501	A	T	ENSMUST00000089215.11	1	ENSMUSG00000030092	missense	I/F	373	Cntn6	ENSMUST00000089215.11:c.1117A>T	ENSMUSP00000086623.5:p.Ile373Phe	H-2-Kb	8	7	5	GTLIFTML	GTLIITML	SMMPMBEC	105.133	2628.694	25.003	210	0.167	134.399	4165.967	30.997	8283.75	147.8	3908.7	128.6	4423.234863	140.197413	2628.693795	105.1332282	SSC_p20	2.2	2.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.172	210	0	0	NA	6qE1	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr6	30815960	30815960	A	G	ENSMUST00000048774.12	1	ENSMUSG00000025607	missense	V/A	480	Copg2	ENSMUST00000048774.12:c.1439T>C	ENSMUSP00000038368.6:p.Val480Ala	H-2-Kb	8	6	6	FIFNRAVL	FIFNRVVL	SMM	138.912	401.55	2.891	140	0.214	159.887	404.813	2.532	524.31	178.28	359.2	181.6	401.5503419	138.9120754	408.0750101	141.4946437	SSC_p20	1.3	1.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	140	0	0	NA	6qA3.3	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr6	106716710	106716710	G	A	ENSMUST00000204659.2	1	ENSMUSG00000005364	missense	L/F	356	Il5ra	ENSMUST00000204659.2:c.1066C>T	ENSMUSP00000144718.1:p.Leu356Phe	H-2-Kb	8	5	7	VLLIFSFI	VLLIFSLI	SMMPMBEC	138.274	198.034	1.432	151	0.166	148.882	178.902	1.202	159.77	217.75	97.1	149.6	223.2235446	148.1630809	198.0341096	138.2738324	SSC_p20	3.057142857	3.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.173	151	0	0	NA	6qE1	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr6	18405230	18405230	T	C	ENSMUST00000090601.11	1	ENSMUSG00000000416	missense	Y/C	1090	Cttnbp2	ENSMUST00000090601.11:c.3269A>G	ENSMUSP00000088089.5:p.Tyr1090Cys	H-2-Kb	8	7	5	SSVTCASM	SSVTYASM	NetMHC	276.55	6.31	0.023	245	0.159	362.299	24.523	0.068	6.31	276.55	15.8	475.5	35.70590129	399.7053856	33.24604589	324.8927349	SSC_p20	1.157142857	1.157142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.162	245	0	0	NA	6qA2	chr6-3373003-28261057	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.955279164	sgMsh2	cell line
chr6	69283934	69283934	TA	T	ENSMUST00000103349.1	NA	ENSMUSG00000076548	FS	Y/X	70	Igkv4-69	ENSMUST00000103349.1:c.208del	ENSMUSP00000100150.1:p.Tyr70MetfsTer26	H-2-Kb	8	25	0	VAVGLGPL	NA	NetMHC	277.12	NA	NA	774	0.155	319.498	NA	NA	NA	277.12	NA	307.3	NA	344.9371732	NA	331.6958211	SSC_p20	1.6	1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.155	774	0	0	NA	6qC1	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.914001669	sgMsh2	cell line
chr6	104774501	104774501	A	T	ENSMUST00000089215.11	1	ENSMUSG00000030092	missense	I/F	373	Cntn6	ENSMUST00000089215.11:c.1117A>T	ENSMUSP00000086623.5:p.Ile373Phe	H-2-Kb	8	9	3	LIFTMLNI	LIITMLNI	NetMHCpan	150.6	999.2	6.635	210	0.167	299.911	1440.126	4.802	2010.94	326.67	999.2	150.6	1565.813381	322.6561891	1314.437679	277.1660292	SSC_p20	1.9	1.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.172	210	0	0	NA	6qE1	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr6	72515320	72515320	A	G	ENSMUST00000162561.8	1	ENSMUSG00000052631	missense	V/A	181	Sh2d6	ENSMUST00000162561.8:c.542T>C	ENSMUSP00000124673.2:p.Val181Ala	H-2-Kb	8	5	7	QPFTLAAL	QPFTLAVL	SMM	136.691	321.914	2.355	100	0.17	392.013	1659.23	4.233	2868.95	584.16	4165.5	2841.1	321.9141004	136.691025	449.5106648	199.8664966	SSC_p20	1.671428571	1.671428571	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.168	100	0	0	NA	6qC1	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	0.990659873	sgMsh2	cell line
chr6	30815960	30815960	A	G	ENSMUST00000048774.12	1	ENSMUSG00000025607	missense	V/A	480	Copg2	ENSMUST00000048774.12:c.1439T>C	ENSMUSP00000038368.6:p.Val480Ala	H-2-Kb	8	4	8	IRFIFNRA	IRFIFNRV	SMMPMBEC	232.135	48.277	0.208	140	0.214	482.306	47.673	0.099	40.71	683.59	149.1	1240.7	47.06954498	281.0217928	48.27696948	232.1346655	SSC_p20	-0.085714286	0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	140	0	0	NA	6qA3.3	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	9	3	9	LVLVSYTRL	LVLVSYTRI	NetMHC	46.33	202.94	4.38	247	0.174	99.281	285.444	2.875	202.94	46.33	207.6	48.9	371.6293451	149.6614677	363.2871195	157.1267038	SSC_p20	0.642857143	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.176	247	0	0	NA	6qB2.1	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr6	57432499	57432499	A	T	ENSMUST00000227909.1	NA	ENSMUSG00000115253	missense	Y/F	270	Vmn1r20	ENSMUST00000227909.1:c.809A>T	ENSMUSP00000153815.1:p.Tyr270Phe	H-2-Kb	9	11	1	FAYPTISPL	YAYPTISPL	NetMHC	61.59	61.61	1	422	0.166	103.321	112.661	1.09	61.61	61.59	63.1	64.7	162.2220929	141.9416992	246.1784313	216.8952295	SSC_p20	0.328571429	0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.167	422	0	0	NA	6qB3	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	0.984763089	sgMsh2	cell line
chr6	106716710	106716710	G	A	ENSMUST00000204659.2	1	ENSMUSG00000005364	missense	L/F	356	Il5ra	ENSMUST00000204659.2:c.1066C>T	ENSMUSP00000144718.1:p.Leu356Phe	H-2-Kb	9	7	5	LIFSFICRV	LIFSLICRV	NetMHC	66.78	507.7	7.603	151	0.166	103.625	516.156	4.981	507.7	66.78	520.5	67.9	511.811453	139.3509712	598.7561676	183.7595844	SSC_p20	1.642857143	2.871428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.173	151	0	0	NA	6qE1	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr6	56730679	56730679	A	C	ENSMUST00000031805.10	1	ENSMUSG00000029787	missense	K/T	203	Avl9	ENSMUST00000031805.10:c.608A>C	ENSMUSP00000031805.8:p.Lys203Thr	H-2-Kb	9	11	1	TVLFYISPV	KVLFYISPV	NetMHCpan	77.4	99.7	1.288	75	0.187	167.906	288.749	1.72	213.49	126.28	99.7	77.4	364.0072218	239.9440583	370.0411313	209.5318271	SSC_p20	1.657142857	1.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.182	75	0	0	NA	6qB3	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	9	4	8	VLVSYTRLL	VLVSYTRIL	NetMHCpan	118.1	254.3	2.153	247	0.174	338.726	712.479	2.103	683.46	204.18	254.3	118.1	741.4980274	473.271116	959.9530659	622.6586131	SSC_p20	0.642857143	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.176	247	0	0	NA	6qB2.1	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr6	21969962	21969962	AT	A	ENSMUST00000031680.9	1	ENSMUSG00000029670	FS	F/X	255	Ing3	ENSMUST00000031680.9:c.765del	ENSMUSP00000031680.3:p.Phe255LeufsTer28	H-2-Kb	9	6	6	ASYEALRTM	ASYEAFKNN	NetMHCpan	118.9	3692.7	31.057	199	0.141	259.274	2367.641	9.132	5898.86	215.78	3692.7	118.9	1042.581466	302.7680195	789.3143527	447.9711029	SSC_p20	-0.357142857	-0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.138	199	0	0	NA	6qA3.1	chr6-3373003-28261057	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.813756325	sgMsh2	cell line
chr6	108399280	108399280	C	T	ENSMUST00000032192.8	1	ENSMUSG00000030102	missense	R/W	1235	Itpr1	ENSMUST00000032192.8:c.3703C>T	ENSMUSP00000032192.6:p.Arg1235Trp	H-2-Kb	9	9	3	IMWLAHEFL	IMRLAHEFL	NetMHCpan	173.3	364.8	2.105	200	0.135	275.443	622.207	2.259	738.74	227.21	364.8	173.3	566.3827268	323.6756285	678.0317017	326.7758854	SSC_p20	0.657142857	0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.149	200	0	0	NA	6qE1	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.878620959	sgMsh2	cell line
chr6	106716710	106716710	G	A	ENSMUST00000204659.2	1	ENSMUSG00000005364	missense	L/F	356	Il5ra	ENSMUST00000204659.2:c.1066C>T	ENSMUSP00000144718.1:p.Leu356Phe	H-2-Kb	9	10	2	SFICRVCHL	SLICRVCHL	NetMHC	254.83	704.37	2.764	151	0.166	341.483	769.266	2.253	704.37	254.83	277.8	291.9	1061.964502	408.4228203	834.1612282	391.0659467	SSC_p20	1.4	1.6	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.173	151	0	0	NA	6qE1	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	9	6	6	VSYTRLLVA	VSYTRILVA	NetMHCpan	129.9	163.6	1.259	247	0.174	176.155	270.535	1.536	712.71	415.25	163.6	129.9	323.6756285	203.287184	217.3952246	149.021867	SSC_p20	1.014285714	1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.176	247	0	0	NA	6qB2.1	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr6	57210453	57210453	T	C	ENSMUST00000227421.1	NA	ENSMUSG00000064259	missense	M/T	199	Vmn1r13	ENSMUST00000227421.1:c.596T>C	ENSMUSP00000154429.1:p.Met199Thr	H-2-Kb	9	8	4	SAYTVIILF	SAYMVIILF	SMM	379.411	316.308	0.834	870	0.116	425.127	352.082	0.828	351.59	425.39	1259.3	742	316.3078717	379.4110717	352.5737704	424.864065	SSC_p20	2.542857143	2.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.117	870	0	0	NA	6qB3	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.68992384	sgMsh2	cell line
chr7	36769746	36769746	CA	C	ENSMUST00000021641.7	1	ENSMUSG00000021217	FS	K/X	387	Tshz3	ENSMUST00000021641.7:c.1161del	ENSMUSP00000021641.6:p.Lys387AsnfsTer19	H-2-Db	9	7	5	SQILNAWSV	NA	NetMHC	16.07	NA	NA	107	0.299	71.082	NA	NA	NA	16.07	NA	28.5	NA	113.6632317	NA	129.5895554	SSC_p20	1.3	1.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.297	107	0	0	NA	7qB2	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr6	123823070	123823070	A	T	ENSMUST00000162046.2	1	ENSMUSG00000094672	missense	I/N	771	Vmn2r25	ENSMUST00000162046.2:c.2312T>A	ENSMUSP00000124342.1:p.Ile771Asn	H-2-Db	9	7	5	LSLLNAFLA	LSLLIAFLA	SMM	207.31	9808.893	47.315	629	0.11	426.642	16259.375	38.11	33273.32	614.74	20862.2	640.1	9808.893066	207.3098799	11656.54917	238.5448253	SSC_p20	2.042857143	2.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.112	629	0	0	NA	6qF2	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.660439916	sgMsh2	cell line
chr7	25272796	25272796	A	G	ENSMUST00000169266.7	1	ENSMUSG00000005442	missense	I/V	651	Cic	ENSMUST00000169266.7:c.1951A>G	ENSMUSP00000132351.1:p.Ile651Val	H-2-Db	10	2	10	FSPINASPVV	FSPINASPVI	NetMHC	14.9	8.41	0.564	78	0.282	465.206	229.143	0.493	8.41	14.9	34.4	92.4	423.8869047	838.0115415	542.8376978	1013.141255	SSC_p20	1.257142857	1.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.286	78	0	0	NA	7qA3	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr7	4628730	4628730	G	A	ENSMUST00000055085.7	1	ENSMUSG00000045282	missense	H/Y	108	Tmem86b	ENSMUST00000055085.7:c.322C>T	ENSMUSP00000060237.6:p.His108Tyr	H-2-Kb	8	5	7	AAFSVAYL	AAFSVAHL	NetMHC	14.01	11.96	0.854	50	0.18	31.802	29.743	0.935	11.96	14.01	19.7	24	41.47056956	39.60408646	39.78689062	40.90157201	SSC_p20	1.757142857	1.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.184	50	0	0	NA	7qA1	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	19643130	19643130	A	C	ENSMUST00000055242.10	1	ENSMUSG00000002981	missense	F/V	170	Clptm1	ENSMUST00000055242.10:c.508T>G	ENSMUSP00000051293.9:p.Phe170Val	H-2-Kb	8	4	8	SIYIHVYV	SIYIHVYF	NetMHC	15.47	62.57	4.045	112	0.214	41.881	121.629	2.904	62.57	15.47	80.8	57.4	162.4575876	35.70590129	166.6249377	48.05515695	SSC_p20	1.657142857	1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.223	112	0	0	NA	7qA3	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr6	141812722	141812722	C	T	ENSMUST00000165990.7	1	ENSMUSG00000030237	missense	C/Y	521	Slco1a4	ENSMUST00000165990.7:c.1562G>A	ENSMUSP00000130746.1:p.Cys521Tyr	H-2-Kb	8	9	3	IGYFIFSL	IGCFIFSL	NetMHCpan	12.6	242.8	19.27	256	0.141	37.327	643.393	17.237	1369.2	21.72	242.8	12.6	759.871227	64.52678095	526.9143181	52.93464441	SSC_p20	1.628571429	1.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.136	256	0	0	NA	6qG2	chr6-125167784-148425959	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.801962755	sgMsh2	cell line
chr7	38267472	38267472	T	A	ENSMUST00000032585.7	1	ENSMUSG00000030423	missense	T/S	62	Pop4	ENSMUST00000032585.7:c.184A>T	ENSMUSP00000032585.6:p.Thr62Ser	H-2-Kb	8	6	6	ILEYFSRL	ILEYFTRL	NetMHCpan	33.3	36.2	1.087	41	0.268	58.969	82.764	1.404	77.07	45.87	36.2	33.3	155.5034397	122.9532464	88.45858744	72.06759014	SSC_p20	0.042857143	0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.301	41	0	0	NA	7qB3	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr7	29386096	29386096	A	G	ENSMUST00000085809.10	5	ENSMUSG00000030583	missense	V/A	692	Sipa1l3	ENSMUST00000085809.10:c.2075T>C	ENSMUSP00000082965.4:p.Val692Ala	H-2-Kb	8	7	5	IMFHASTL	IMFHVSTL	NetMHCpan	22.2	20.2	0.91	184	0.174	66.789	50.906	0.762	38.17	52.53	20.2	22.2	63.64144033	81.04757034	63.93519587	81.98605697	SSC_p20	0.8	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.179	184	0	0	NA	7qB1	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr6	141532679	141532679	A	G	ENSMUST00000032362.11	1	ENSMUSG00000030235	missense	K/R	56	Slco1c1	ENSMUST00000032362.11:c.167A>G	ENSMUSP00000032362.9:p.Lys56Arg	H-2-Kb	8	4	8	LSFVYFAR	LSFVYFAK	NetMHC	71.6	273.33	3.817	131	0.168	97.337	165.283	1.698	273.33	71.6	241.7	126.8	88.86689373	86.84403626	56.4598864	107.830098	SSC_p20	0.714285714	1.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.172	131	0	0	NA	6qG2	chr6-125167784-148425959	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr7	4628730	4628730	G	A	ENSMUST00000055085.7	1	ENSMUSG00000045282	missense	H/Y	108	Tmem86b	ENSMUST00000055085.7:c.322C>T	ENSMUSP00000060237.6:p.His108Tyr	H-2-Kb	8	9	3	VAYLFYLG	VAHLFYLG	SMM	25.807	303.907	11.776	50	0.18	59.375	717.408	12.083	2140.81	77.28	1012.4	95.7	303.9065077	25.80714726	422.4156501	41.47056956	SSC_p20	1.314285714	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.184	50	0	0	NA	7qA1	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr6	145047295	145047295	TA	T	ENSMUST00000032402.11	1	ENSMUSG00000030268	FS	F/X	92	Bcat1	ENSMUST00000032402.11:c.276del	ENSMUSP00000032402.5:p.Phe92LeufsTer14	H-2-Kb	8	15	0	ISSSHQPL	NA	NetMHC	79.54	NA	NA	200	0.155	113.653	NA	NA	NA	79.54	NA	224.6	NA	103.2143305	NA	124.0909187	SSC_p20	-0.985714286	-0.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.157	200	0	0	NA	6qG3	chr6-125167784-148425959	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.925795239	sgMsh2	cell line
chr6	131678742	131678742	C	T	ENSMUST00000076756.2	NA	ENSMUSG00000057754	missense	G/S	49	Tas2r106	ENSMUST00000076756.2:c.145G>A	ENSMUSP00000076043.2:p.Gly49Ser	H-2-Kb	8	5	7	AGFILTSL	AGFILTGL	NetMHCpan	58.8	55.1	0.937	217	0.171	111.99	98.799	0.882	70.03	91.32	55.1	58.8	135.4378341	140.197413	127.5674869	132.6600022	SSC_p20	1.857142857	1.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.173	217	0	0	NA	6qF3	chr6-125167784-148425959	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr6	141532679	141532679	A	G	ENSMUST00000032362.11	1	ENSMUSG00000030235	missense	K/R	56	Slco1c1	ENSMUST00000032362.11:c.167A>G	ENSMUSP00000032362.9:p.Lys56Arg	H-2-Kb	8	5	7	SFVYFARA	SFVYFAKA	NetMHC	104.42	421.4	4.036	131	0.168	172.62	538.576	3.12	421.4	104.42	215.7	105.5	804.8964279	281.6696149	655.752568	239.7397234	SSC_p20	1.085714286	1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.172	131	0	0	NA	6qG2	chr6-125167784-148425959	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr6	141532679	141532679	A	G	ENSMUST00000032362.11	1	ENSMUSG00000030235	missense	K/R	56	Slco1c1	ENSMUST00000032362.11:c.167A>G	ENSMUSP00000032362.9:p.Lys56Arg	H-2-Kb	8	6	6	FVYFARAL	FVYFAKAL	NetMHCpan	53.9	100.9	1.872	131	0.168	100.957	211.274	2.093	281	106.91	100.9	53.9	196.218522	95.00358634	226.3288934	123.2366829	SSC_p20	1.228571429	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.172	131	0	0	NA	6qG2	chr6-125167784-148425959	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr7	10714428	10714428	A	T	ENSMUST00000117413.8	1	ENSMUSG00000034087	missense	D/V	186	Nlrp4b	ENSMUST00000117413.8:c.557A>T	ENSMUSP00000113095.1:p.Asp186Val	H-2-Kb	8	4	8	IFYFCCHV	IFYFCCHD	SMM	77.936	520.883	6.683	204	0.27	104.018	3188.951	30.658	5857.02	125.86	6625.8	197.3	520.8827797	77.93633877	467.4552051	82.17505435	SSC_p20	1.471428571	1.514285714	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.273	204	0	0	NA	7qA1	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr6	149166910	149166910	T	C	ENSMUST00000111535.7	5	ENSMUSG00000068250	missense	N/S	200	Amn1	ENSMUST00000111535.7:c.599A>G	ENSMUSP00000107160.1:p.Asn200Ser	H-2-Kb	8	11	1	SMRYCINL	NMRYCINL	NetMHCpan	101.1	516.9	5.113	166	0.181	283.649	1809.961	6.381	960.79	147.79	516.9	101.1	2665.262568	419.5077612	2659.132635	468.5328006	SSC_p20	0.485714286	0.485714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.185	166	0	0	NA	6qG3	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr6	124061284	124061284	C	T	ENSMUST00000032238.4	1	ENSMUSG00000096630	missense	A/V	606	Vmn2r26	ENSMUST00000032238.4:c.1817C>T	ENSMUSP00000032238.3:p.Ala606Val	H-2-Kb	8	10	2	SVFSAMIL	SAFSAMIL	NetMHCpan	95.4	113.7	1.192	470	0.162	207.424	182.361	0.879	129.9	176.21	113.7	95.4	234.8226582	238.6382195	365.3759857	337.8625068	SSC_p20	2.6	2.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.163	470	0	0	NA	6qF2	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	0.961175949	sgMsh2	cell line
chr6	123393926	123393926	GT	G	ENSMUST00000172199.2	5	ENSMUSG00000094145	FS	T/X	532	Vmn2r20	ENSMUST00000172199.2:c.1594del	ENSMUSP00000129145.1:p.Thr532HisfsTer77	H-2-Kb	8	19	0	VALIVSHV	NA	NetMHC	186.77	NA	NA	315	0.137	365.081	NA	NA	NA	186.77	NA	363.1	NA	367.0624846	NA	443.3431473	SSC_p20	2.071428571	2.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.137	315	0	0	NA	6qF2	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.80785954	sgMsh2	cell line
chr7	24566482	24566482	A	G	ENSMUST00000205573.1	1	ENSMUSG00000051768	missense	I/V	197	Xrcc1	ENSMUST00000205573.1:c.589A>G	ENSMUSP00000146105.1:p.Ile197Val	H-2-Kb	8	4	8	GALFFSRV	GALFFSRI	NetMHCpan	124.6	118.2	0.949	130	0.277	263.463	424.193	1.61	478.78	293.72	118.2	124.6	555.5715525	306.013087	369.6068402	233.2061504	SSC_p20	1.442857143	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.266	130	0	0	NA	7qA3	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr6	123823070	123823070	A	T	ENSMUST00000162046.2	1	ENSMUSG00000094672	missense	I/N	771	Vmn2r25	ENSMUST00000162046.2:c.2312T>A	ENSMUSP00000124342.1:p.Ile771Asn	H-2-Kb	8	7	5	LSLLNAFL	LSLLIAFL	SMMPMBEC	135.126	140.197	1.038	629	0.11	246.447	143.909	0.584	147.62	423.72	136.1	325.5	194.8677632	167.3940435	140.197413	135.1263357	SSC_p20	1.671428571	1.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.112	629	0	0	NA	6qF2	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.660439916	sgMsh2	cell line
chr7	38267472	38267472	T	A	ENSMUST00000032585.7	1	ENSMUSG00000030423	missense	T/S	62	Pop4	ENSMUST00000032585.7:c.184A>T	ENSMUSP00000032585.6:p.Thr62Ser	H-2-Kb	8	5	7	VILEYFSR	VILEYFTR	SMM	209.286	253.361	1.211	41	0.268	412.364	591.486	1.434	722.99	456.82	972.2	944.7	253.3611374	209.2859144	459.9811133	367.908651	SSC_p20	0.142857143	1.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.301	41	0	0	NA	7qB3	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr6	125980155	125980155	A	G	ENSMUST00000160496.7	1	ENSMUSG00000038115	missense	K/R	629	Ano2	ENSMUST00000160496.7:c.1886A>G	ENSMUSP00000125303.1:p.Lys629Arg	H-2-Kb	8	6	6	KAFLLRFV	KAFLLKFV	NetMHCpan	272.4	547.6	2.01	274	0.179	351.17	682.716	1.944	1229.78	480.77	547.6	272.4	681.9303192	330.1718172	683.502331	372.1688324	SSC_p20	2.1	2.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.187	274	0	0	NA	6qF3	chr6-125167784-148425959	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr6	123704621	123704621	A	T	ENSMUST00000172391.3	5	ENSMUSG00000091620	missense	I/F	163	Vmn2r23	ENSMUST00000172391.3:c.487A>T	ENSMUSP00000126682.2:p.Ile163Phe	H-2-Kb	8	7	5	QISQFLSL	QISQILSL	SMM	366.218	11554.203	31.55	349	0.117	483.614	12379.626	25.598	14348.38	566.45	6784.1	439.1	11554.20317	366.2182643	13205.04848	528.128981	SSC_p20	1.4	1.4	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.123	349	0	0	NA	6qF2	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.72530455	sgMsh2	cell line
chr6	123823070	123823070	A	T	ENSMUST00000162046.2	1	ENSMUSG00000094672	missense	I/N	771	Vmn2r25	ENSMUST00000162046.2:c.2312T>A	ENSMUSP00000124342.1:p.Ile771Asn	H-2-Kb	8	11	1	NAFLARRL	IAFLARRL	SMM	310.985	25.986	0.084	629	0.11	378.973	22.293	0.059	14.41	711.36	18.6	433.8	25.98603386	310.9853997	27.21071791	324.1455024	SSC_p20	0.714285714	0.714285714	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.112	629	0	0	NA	6qF2	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.660439916	sgMsh2	cell line
chr7	38267472	38267472	T	A	ENSMUST00000032585.7	1	ENSMUSG00000030423	missense	T/S	62	Pop4	ENSMUST00000032585.7:c.184A>T	ENSMUSP00000032585.6:p.Thr62Ser	H-2-Kb	9	5	7	VILEYFSRL	VILEYFTRL	NetMHC	3.73	4.56	1.223	41	0.268	11.527	13.92	1.208	4.56	3.73	4.6	4.3	23.39429705	18.75469475	23.24074256	20.19528563	SSC_p20	0.042857143	1.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.301	41	0	0	NA	7qB3	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr6	149166910	149166910	T	C	ENSMUST00000111535.7	5	ENSMUSG00000068250	missense	N/S	200	Amn1	ENSMUST00000111535.7:c.599A>G	ENSMUSP00000107160.1:p.Asn200Ser	H-2-Kb	9	10	2	ISMRYCINL	INMRYCINL	NetMHC	5.23	8.07	1.543	166	0.181	46.523	52.477	1.128	8.07	5.23	6.8	5.9	113.0082111	106.1964502	96.88354023	87.14651012	SSC_p20	0.485714286	0.971428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.185	166	0	0	NA	6qG3	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr6	141532679	141532679	A	G	ENSMUST00000032362.11	1	ENSMUSG00000030235	missense	K/R	56	Slco1c1	ENSMUST00000032362.11:c.167A>G	ENSMUSP00000032362.9:p.Lys56Arg	H-2-Kb	9	4	8	LSFVYFARA	LSFVYFAKA	NetMHC	8.07	18.23	2.259	131	0.168	41.355	63.038	1.524	18.23	8.07	19.6	12.2	162.2220929	88.94263671	106.4755765	70.50988397	SSC_p20	1.085714286	1.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.172	131	0	0	NA	6qG2	chr6-125167784-148425959	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr7	4628730	4628730	G	A	ENSMUST00000055085.7	1	ENSMUSG00000045282	missense	H/Y	108	Tmem86b	ENSMUST00000055085.7:c.322C>T	ENSMUSP00000060237.6:p.His108Tyr	H-2-Kb	9	9	3	VAYLFYLGA	VAHLFYLGA	NetMHC	8.59	79.22	9.222	50	0.18	20.803	109.661	5.272	79.22	8.59	82.2	17.5	137.1229033	24.10515897	164.1534444	30.21690645	SSC_p20	1.314285714	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.184	50	0	0	NA	7qA1	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr6	124061284	124061284	C	T	ENSMUST00000032238.4	1	ENSMUSG00000096630	missense	A/V	606	Vmn2r26	ENSMUST00000032238.4:c.1817C>T	ENSMUSP00000032238.3:p.Ala606Val	H-2-Kb	9	7	5	ISLSVFSAM	ISLSAFSAM	NetMHC	29.67	17.34	0.584	470	0.162	96.824	71.54	0.739	17.34	29.67	28.5	31.8	114.5803119	161.8489924	169.9221522	190.6557905	SSC_p20	1.842857143	1.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.163	470	0	0	NA	6qF2	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	0.961175949	sgMsh2	cell line
chr7	25630422	25630422	G	T	ENSMUST00000205808.1	5	ENSMUSG00000060376	missense	P/H	92	Bckdha	ENSMUST00000205808.1:c.275C>A	ENSMUSP00000146018.1:p.Pro92His	H-2-Kb	9	10	5	RSWKHLSRL	RSWKPLSRL	NetMHCpan	40.3	284.5	7.06	18	0.167	90.509	379.431	4.192	202.73	43.85	284.5	40.3	474.3621186	146.9298381	571.8077009	137.1671136	SSC_p20	-0.814285714	-0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.222	18	0	0	NA	7qA3	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr7	5488738	5488738	C	A	ENSMUST00000086297.7	5	ENSMUSG00000066820	missense	G/V	170	Vmn2r28	ENSMUST00000086297.7:c.509G>T	ENSMUSP00000083477.5:p.Gly170Val	H-2-Kb	9	8	4	LTYVPFSSI	LTYGPFSSI	NetMHCpan	34.4	69.3	2.015	438	0.107	99.7	152.436	1.529	99.23	44.48	69.3	34.4	205.6411387	154.920896	236.7282022	201.0249672	SSC_p20	1	1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.113	438	0	0	NA	7qA1	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.666336701	sgMsh2	cell line
chr7	10714428	10714428	A	T	ENSMUST00000117413.8	1	ENSMUSG00000034087	missense	D/V	186	Nlrp4b	ENSMUST00000117413.8:c.557A>T	ENSMUSP00000113095.1:p.Asp186Val	H-2-Kb	9	3	9	YIFYFCCHV	YIFYFCCHD	NetMHC	65.43	3097.29	47.337	204	0.27	158.009	1817.316	11.501	3097.29	65.43	4922.7	150.4	471.0966327	165.6189397	537.3410257	201.0249672	SSC_p20	1.471428571	1.785714286	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.273	204	0	0	NA	7qA1	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr6	136750978	136750978	AT	A	ENSMUST00000032338.9	1	ENSMUSG00000042638	FS	N/X	342	Gucy2c	ENSMUST00000032338.9:c.1025del	ENSMUSP00000032338.7:p.Asn342MetfsTer26	H-2-Kb	9	24	0	SGISLFKAL	NA	NetMHC	69.69	NA	NA	150	0.1	264.052	NA	NA	NA	69.69	NA	70.9	NA	457.2039776	NA	548.5926694	SSC_p20	1.714285714	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.093	150	0	0	NA	6qG1	chr6-125167784-148425959	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.548401001	sgMsh2	cell line
chr7	29386096	29386096	A	G	ENSMUST00000085809.10	5	ENSMUSG00000030583	missense	V/A	692	Sipa1l3	ENSMUST00000085809.10:c.2075T>C	ENSMUSP00000082965.4:p.Val692Ala	H-2-Kb	9	7	5	IMFHASTLL	IMFHVSTLL	NetMHCpan	34.3	42.3	1.233	184	0.174	73.196	96.94	1.324	95	76.39	42.3	34.3	98.88035114	70.00192775	121.4087534	108.2056654	SSC_p20	1.071428571	1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.179	184	0	0	NA	7qB1	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr6	141532679	141532679	A	G	ENSMUST00000032362.11	1	ENSMUSG00000030235	missense	K/R	56	Slco1c1	ENSMUST00000032362.11:c.167A>G	ENSMUSP00000032362.9:p.Lys56Arg	H-2-Kb	9	5	7	SFVYFARAL	SFVYFAKAL	NetMHC	90.76	210.98	2.325	131	0.168	303.576	377.92	1.245	210.98	90.76	211.2	119.5	544.6405843	487.6519891	802.1396792	782.0778752	SSC_p20	1.228571429	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.172	131	0	0	NA	6qG2	chr6-125167784-148425959	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr7	4628730	4628730	G	A	ENSMUST00000055085.7	1	ENSMUSG00000045282	missense	H/Y	108	Tmem86b	ENSMUST00000055085.7:c.322C>T	ENSMUSP00000060237.6:p.His108Tyr	H-2-Kb	9	7	5	FSVAYLFYL	FSVAHLFYL	NetMHC	117.61	191.04	1.624	50	0.18	191.366	229.821	1.201	191.04	117.61	177.5	167.4	268.6024688	215.332707	304.2636004	242.2423104	SSC_p20	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.184	50	0	0	NA	7qA1	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr6	141812722	141812722	C	T	ENSMUST00000165990.7	1	ENSMUSG00000030237	missense	C/Y	521	Slco1a4	ENSMUST00000165990.7:c.1562G>A	ENSMUSP00000130746.1:p.Cys521Tyr	H-2-Kb	9	8	4	IIGYFIFSL	IIGCFIFSL	NetMHCpan	173.5	312.4	1.801	256	0.141	196.067	288.705	1.472	297.35	189.78	312.4	173.5	279.9690348	202.3531643	280.0593007	222.9718309	SSC_p20	1.628571429	2.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.136	256	0	0	NA	6qG2	chr6-125167784-148425959	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.801962755	sgMsh2	cell line
chr6	123704621	123704621	A	T	ENSMUST00000172391.3	5	ENSMUSG00000091620	missense	I/F	163	Vmn2r23	ENSMUST00000172391.3:c.487A>T	ENSMUSP00000126682.2:p.Ile163Phe	H-2-Kb	9	6	6	TQISQFLSL	TQISQILSL	NetMHCpan	172.2	1333.9	7.746	349	0.117	419.276	2121.116	5.059	2185.82	257.64	1333.9	172.2	2056.411387	580.9115347	2350.985768	687.4640623	SSC_p20	1.4	1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.123	349	0	0	NA	6qF2	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.72530455	sgMsh2	cell line
chr6	123393926	123393926	GT	G	ENSMUST00000172199.2	5	ENSMUSG00000094145	FS	T/X	532	Vmn2r20	ENSMUST00000172199.2:c.1594del	ENSMUSP00000129145.1:p.Thr532HisfsTer77	H-2-Kb	9	58	0	LKLRYFCPM	NA	NetMHCpan	300.4	NA	NA	315	0.137	310.882	NA	NA	NA	311.13	NA	300.4	NA	338.9299909	NA	310.6347231	SSC_p20	0.514285714	0.514285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.137	315	0	0	NA	6qF2	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.80785954	sgMsh2	cell line
chr6	134484391	134484391	T	G	ENSMUST00000032322.14	1	ENSMUSG00000030201	missense	E/A	701	Lrp6	ENSMUST00000032322.14:c.2102A>C	ENSMUSP00000032322.8:p.Glu701Ala	H-2-Kb	9	4	8	SALEHVVAF	SALEHVVEF	NetMHC	346.5	552.55	1.595	178	0.152	444.167	549.223	1.237	552.55	346.5	572.2	399.4	545.8961105	515.3591605	539.8212792	488.9337312	SSC_p20	1.442857143	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.161	178	0	0	NA	6qG1	chr6-125167784-148425959	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.949382379	sgMsh2	cell line
chr7	4628730	4628730	G	A	ENSMUST00000055085.7	1	ENSMUSG00000045282	missense	H/Y	108	Tmem86b	ENSMUST00000055085.7:c.322C>T	ENSMUSP00000060237.6:p.His108Tyr	H-2-Kb	9	10	2	AYLFYLGAF	AHLFYLGAF	SMMPMBEC	401.098	529.968	1.321	50	0.18	478.522	581.999	1.216	521.98	499.84	754.5	1485.8	634.0302809	457.2039776	529.9684305	401.0975415	SSC_p20	1.9	1.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.184	50	0	0	NA	7qA1	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	36769746	36769746	CA	C	ENSMUST00000021641.7	1	ENSMUSG00000021217	FS	K/X	387	Tshz3	ENSMUST00000021641.7:c.1161del	ENSMUSP00000021641.6:p.Lys387AsnfsTer19	H-2-Kb	9	19	0	MTRSRSSQL	NA	SMM	259.484	NA	NA	107	0.299	486.891	NA	NA	NA	640.93	NA	1369.8	NA	259.483651	NA	332.8511027	SSC_p20	-1.585714286	-1.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.297	107	0	0	NA	7qB2	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr6	141812722	141812722	C	T	ENSMUST00000165990.7	1	ENSMUSG00000030237	missense	C/Y	521	Slco1a4	ENSMUST00000165990.7:c.1562G>A	ENSMUSP00000130746.1:p.Cys521Tyr	H-2-Kb	9	6	6	ISIIGYFIF	ISIIGCFIF	SMMPMBEC	241.685	1047.731	4.335	256	0.141	492.662	1781.784	3.617	2248.01	704.71	3629.2	809.7	1315.558	280.61443	1047.731497	241.6851686	SSC_p20	2.485714286	2.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.136	256	0	0	NA	6qG2	chr6-125167784-148425959	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.801962755	sgMsh2	cell line
chr6	141812722	141812722	C	T	ENSMUST00000165990.7	1	ENSMUSG00000030237	missense	C/Y	521	Slco1a4	ENSMUST00000165990.7:c.1562G>A	ENSMUSP00000130746.1:p.Cys521Tyr	H-2-Kb	9	9	3	IGYFIFSLG	IGCFIFSLG	NetMHCpan	204	3846.9	18.857	256	0.141	419.218	4646.653	11.084	11963.68	1462.02	3846.9	204	5446.405843	477.6502397	2589.703239	360.7862685	SSC_p20	1.628571429	1.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.136	256	0	0	NA	6qG2	chr6-125167784-148425959	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.801962755	sgMsh2	cell line
chr7	4628730	4628730	G	A	ENSMUST00000055085.7	1	ENSMUSG00000045282	missense	H/Y	108	Tmem86b	ENSMUST00000055085.7:c.322C>T	ENSMUSP00000060237.6:p.His108Tyr	H-2-Kb	10	9	3	VAYLFYLGAF	VAHLFYLGAF	NetMHC	24.17	187.85	7.772	50	0.18	384.486	1494.672	3.887	187.85	24.17	197.7	43.1	3616.845854	964.5616704	2791.643777	725.8719263	SSC_p20	1.9	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.184	50	0	0	NA	7qA1	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	103220304	103220304	G	T	ENSMUST00000214051.1	5	ENSMUSG00000073954	missense	K/N	195	Olfr594	ENSMUST00000214051.1:c.585G>T	ENSMUSP00000149847.1:p.Lys195Asn	H-2-Db	9	7	5	CANINVNII	CANIKVNII	NetMHC	90.81	15924.06	175.356	196	0.224	165.924	8128.239	48.988	15924.06	90.81	8571.9	131.6	7684.577591	236.3850465	6723.106641	200.2488359	SSC_p20	1.028571429	1.028571429	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.23	196	0	0	NA	7qE3	chr7-102446269-104329817	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	62379763	62379763	AG	A	ENSMUST00000080403.6	NA	ENSMUSG00000056972	FS	R/X	805	Magel2	ENSMUST00000080403.6:c.2419del	ENSMUSP00000079265.5:p.Ala807HisfsTer67	H-2-Db	9	47	0	SSLPLLMPL	NA	SMM	243.568	NA	NA	131	0.26	496.602	NA	NA	NA	725.17	NA	662.4	NA	243.567871	NA	330.803427	SSC_p20	1.985714286	1.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.275	131	0	0	NA	7qC	chr7-46263762-78463232	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr7	107845085	107845085	A	G	ENSMUST00000220193.1	5	ENSMUSG00000109542	missense	V/A	216	Olfr470	ENSMUST00000220193.1:c.647T>C	ENSMUSP00000151543.1:p.Val216Ala	H-2-Db	10	10	2	SAIAISYTYI	SVIAISYTYI	NetMHC	39.9	809.99	20.301	634	0.014	397.066	1754.989	4.42	809.99	39.9	1663.9	116.1	1846.077801	678.0317017	2107.026511	684.967554	SSC_p20	0.957142857	1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.017	634	0	0	NA	7qE3	chr7-104329818-126292906	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.100245344	sgMsh2	cell line
chr7	86954408	86954408	T	C	ENSMUST00000170835.3	5	ENSMUSG00000091962	missense	I/T	598	Vmn2r78	ENSMUST00000170835.3:c.1793T>C	ENSMUSP00000126698.2:p.Ile598Thr	H-2-Kb	8	5	7	SSLTFITL	SSLTFIIL	NetMHC	4.96	12.21	2.462	263	0.255	10.548	23.012	2.182	12.21	4.96	17.4	8.6	28.6246378	12.49510759	37.47485835	14.34630303	SSC_p20	1.814285714	1.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.255	263	0	0	NA	7qD3	chr7-78477559-102443340	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr7	106873621	106873621	A	G	ENSMUST00000216009.1	5	ENSMUSG00000109058	missense	I/T	208	Olfr705	ENSMUST00000216009.1:c.623T>C	ENSMUSP00000150853.1:p.Ile208Thr	H-2-Kb	8	7	5	VTFLTPPL	VTFLIPPL	NetMHCpan	14.9	10	0.671	260	0.042	19.583	19.166	0.979	14.08	16.74	10	14.9	28.23189304	23.05366617	24.25157786	22.42538976	SSC_p20	0.828571429	0.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.04	260	0	0	NA	7qE3	chr7-104329818-126292906	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.235871398	sgMsh2	cell line
chr7	41872661	41872661	T	C	ENSMUST00000171671.2	5	ENSMUSG00000090383	missense	I/V	4	Vmn2r58	ENSMUST00000171671.2:c.10A>G	ENSMUSP00000126966.1:p.Ile4Val	H-2-Kb	8	3	2	WVFTFGLL	WIFTFGLL	SMMPMBEC	16.933	12.071	0.713	158	0.196	20.077	14.348	0.715	14.74	18.24	31.9	25.2	13.95532644	21.91492557	12.07090967	16.93323751	SSC_p20	2.328571429	2.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.197	158	0	0	NA	7qB3	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	80717097	80717097	T	A	ENSMUST00000167377.2	1	ENSMUSG00000030536	missense	I/F	1592	Iqgap1	ENSMUST00000167377.2:c.4774A>T	ENSMUSP00000128278.1:p.Ile1592Phe	H-2-Kb	8	7	5	VIFEFGPT	VIFEIGPT	NetMHC	19.03	1460.12	76.727	141	0.241	28.727	1248.514	43.461	1460.12	19.03	1472.7	69.5	1036.907462	32.86548155	614.8086937	24.58895091	SSC_p20	0.557142857	1.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	141	0	0	NA	7qD3	chr7-78477559-102443340	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr7	80620550	80620550	A	C	ENSMUST00000122255.7	1	ENSMUSG00000030527	missense	S/A	129	Crtc3	ENSMUST00000122255.7:c.385T>G	ENSMUSP00000113540.1:p.Ser129Ala	H-2-Kb	8	7	5	ASYSAQHL	ASYSSQHL	NetMHC	20.45	24.57	1.201	99	0.263	46.405	54.652	1.178	24.57	20.45	46.1	34.5	63.20333573	58.30959165	76.69022289	67.8797134	SSC_p20	-0.571428571	-0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.271	99	0	0	NA	7qD3	chr7-78477559-102443340	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr7	108066532	108066532	T	C	ENSMUST00000071658.2	NA	ENSMUSG00000063120	missense	M/V	89	Olfr480	ENSMUST00000071658.2:c.265A>G	ENSMUSP00000071583.2:p.Met89Val	H-2-Kb	8	11	1	VYLFLSHL	MYLFLSHL	NetMHCpan	13.1	28.9	2.206	276	0.203	134.327	287.934	2.144	52.58	23.33	28.9	13.1	523.2870654	245.323979	556.8522772	262.8693795	SSC_p20	1.271428571	1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.199	276	0	0	NA	7qE3	chr7-104329818-126292906	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	104579774	104579774	C	A	ENSMUST00000217466.1	5	ENSMUSG00000073926	missense	L/I	43	Olfr653	ENSMUST00000217466.1:c.127C>A	ENSMUSP00000149192.1:p.Leu43Ile	H-2-Kb	8	7	5	SMYIIALV	SMYILALV	NetMHC	36.14	15.33	0.424	173	0.243	160.928	65.748	0.409	15.33	36.14	41.6	75.4	89.89592386	268.9923939	105.1332282	246.456343	SSC_p20	2.771428571	2.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.248	173	0	0	NA	7qE3	chr7-104329818-126292906	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	56734976	56734976	CT	C	ENSMUST00000068911.12	1	ENSMUSG00000055026	FS	K/X	279	Gabrg3	ENSMUST00000068911.12:c.836del	ENSMUSP00000067632.6:p.Lys279ArgfsTer10	H-2-Kb	8	5	7	VSFWIKRM	VSFWIKKD	NetMHCpan	32.2	11566.3	359.202	110	0.236	88.005	7143.686	81.173	17420.67	52.49	11566.3	32.2	2721.071791	159.8600704	1777.215122	123.5207728	SSC_p20	-0.128571429	0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.245	110	0	0	NA	7qB5	chr7-46263762-78463232	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	75866053	75866053	G	A	ENSMUST00000171155.3	1	ENSMUSG00000055652	missense	V/M	236	Klhl25	ENSMUST00000171155.3:c.706G>A	ENSMUSP00000133175.2:p.Val236Met	H-2-Kb	8	9	3	RNMRLALL	RNVRLALL	NetMHC	55	131.95	2.399	89	0.157	121.063	208.964	1.726	131.95	55	141.4	55.6	276.528565	214.1608096	285.5880296	186.5262676	SSC_p20	1.014285714	1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.16	89	0	0	NA	7qD1	chr7-46263762-78463232	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.943485594	sgMsh2	cell line
chr7	62419972	62419972	TC	T	ENSMUST00000094340.3	NA	ENSMUSG00000070527	FS	E/X	24	Mkrn3	ENSMUST00000094340.3:c.70del	ENSMUSP00000091898.3:p.Glu24ArgfsTer36	H-2-Kb	8	11	1	RVCLFPPL	NA	SMMPMBEC	44.951	NA	NA	28	0.357	58.684	NA	NA	NA	65.4	NA	82.2	NA	51.96847826	NA	44.95106648	SSC_p20	1.985714286	1.985714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.372	28	0	0	NA	7qC	chr7-46263762-78463232	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr7	103561109	103561109	G	A	ENSMUST00000215673.1	5	ENSMUSG00000073947	missense	D/N	211	Olfr615	ENSMUST00000215673.1:c.631G>A	ENSMUSP00000150166.1:p.Asp211Asn	H-2-Kb	8	10	2	VNFLLIAI	VDFLLIAI	NetMHCpan	40	2359.1	58.977	201	0.194	96.14	1509.699	15.703	3768.11	92.57	2359.1	40	660.2980276	99.71029474	655.752568	115.2762924	SSC_p20	2.528571429	2.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.206	201	0	0	NA	7qE3	chr7-102446269-104329817	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	105555462	105555462	AC	A	ENSMUST00000046983.9	1	ENSMUSG00000037049	FS	P/X	183	Smpd1	ENSMUST00000046983.9:c.551del	ENSMUSP00000042187.8:p.Pro184GlnfsTer72	H-2-Kb	8	47	0	VQIHFAAA	NA	SMMPMBEC	150.918	NA	NA	127	0.299	175.233	NA	NA	NA	165.65	NA	488.7	NA	184.8161845	NA	150.9176382	SSC_p20	0.857142857	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.301	127	0	0	NA	7qE3	chr7-104329818-126292906	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr7	105555462	105555462	AC	A	ENSMUST00000046983.9	1	ENSMUSG00000037049	FS	P/X	183	Smpd1	ENSMUST00000046983.9:c.551del	ENSMUSP00000042187.8:p.Pro184GlnfsTer72	H-2-Kb	8	38	0	STWRAQTL	NA	NetMHCpan	140.5	NA	NA	127	0.299	249.349	NA	NA	NA	259.51	NA	140.5	NA	239.1883374	NA	262.2647967	SSC_p20	-0.671428571	-0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.301	127	0	0	NA	7qE3	chr7-104329818-126292906	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr7	62379763	62379763	AG	A	ENSMUST00000080403.6	NA	ENSMUSG00000056972	FS	R/X	805	Magel2	ENSMUST00000080403.6:c.2419del	ENSMUSP00000079265.5:p.Ala807HisfsTer67	H-2-Kb	8	48	0	SLPLLMPL	NA	NetMHCpan	360.7	NA	NA	131	0.26	446.234	NA	NA	NA	364.34	NA	360.7	NA	528.128981	NA	604.9785825	SSC_p20	1.985714286	1.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.275	131	0	0	NA	7qC	chr7-46263762-78463232	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr7	106886521	106886521	G	T	ENSMUST00000213918.1	5	ENSMUSG00000109354	missense	L/I	99	Olfr706	ENSMUST00000213918.1:c.295C>A	ENSMUSP00000150075.1:p.Leu99Ile	H-2-Kb	8	11	1	IQMALALM	LQMALALM	NetMHCpan	225.8	1084.7	4.804	210	0.21	488.486	2680.818	5.488	2769.01	369.2	1084.7	225.8	3653.759857	770.4420888	2592.626764	607.7710368	SSC_p20	1.642857143	2.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.201	210	0	0	NA	7qE3	chr7-104329818-126292906	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	108066532	108066532	T	C	ENSMUST00000071658.2	NA	ENSMUSG00000063120	missense	M/V	89	Olfr480	ENSMUST00000071658.2:c.265A>G	ENSMUSP00000071583.2:p.Met89Val	H-2-Kb	8	8	4	HTPVYLFL	HTPMYLFL	NetMHCpan	245.7	219.6	0.894	276	0.203	262.002	292.515	1.116	407.26	463.94	219.6	245.7	316.0385059	266.5262568	268.9923939	257.4779247	SSC_p20	1.571428571	1.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.199	276	0	0	NA	7qE3	chr7-104329818-126292906	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	62419972	62419972	TC	T	ENSMUST00000094340.3	NA	ENSMUSG00000070527	FS	E/X	24	Mkrn3	ENSMUST00000094340.3:c.70del	ENSMUSP00000091898.3:p.Glu24ArgfsTer36	H-2-Kb	8	19	0	LSLRLLEL	NA	NetMHCpan	293.7	NA	NA	28	0.357	477.609	NA	NA	NA	496.72	NA	293.7	NA	496.2951144	NA	458.9231861	SSC_p20	0.914285714	0.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.372	28	0	0	NA	7qC	chr7-46263762-78463232	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr7	103561109	103561109	G	A	ENSMUST00000215673.1	5	ENSMUSG00000073947	missense	D/N	211	Olfr615	ENSMUST00000215673.1:c.631G>A	ENSMUSP00000150166.1:p.Asp211Asn	H-2-Kb	8	6	6	FSFGVNFL	FSFGVDFL	SMM	150.571	284.931	1.892	201	0.194	316.091	920.531	2.912	2167.05	614.28	1461.1	439.1	284.9311953	150.5705372	379.9618556	193.0812048	SSC_p20	1.271428571	1.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.206	201	0	0	NA	7qE3	chr7-102446269-104329817	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	86811337	86811337	G	A	ENSMUST00000164996.1	5	ENSMUSG00000090949	missense	V/I	624	Vmn2r77	ENSMUST00000164996.1:c.1870G>A	ENSMUSP00000129540.1:p.Val624Ile	H-2-Kb	8	6	6	ETLSYILL	ETLSYVLL	SMMPMBEC	299.737	258.071	0.861	394	0.221	438.719	380.319	0.867	864.89	988.22	444.6	532.5	316.0385059	344.9371732	258.0714726	299.7367541	SSC_p20	1.871428571	1.871428571	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.216	394	0	0	NA	7qD3	chr7-78477559-102443340	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr7	105368670	105368670	A	C	ENSMUST00000217827.1	NA	ENSMUSG00000073906	missense	M/L	115	Olfr692	ENSMUST00000217827.1:c.343A>C	ENSMUSP00000151295.1:p.Met115Leu	H-2-Kb	8	9	3	IQLFFVHA	IQMFFVHA	SMMPMBEC	284.931	375.612	1.318	174	0.293	431.481	503.096	1.166	956.99	1001.03	255.3	495.9	630.579721	367.0624846	375.6124682	284.9311953	SSC_p20	1.242857143	1.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.298	174	0	0	NA	7qE3	chr7-104329818-126292906	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr7	86811337	86811337	G	A	ENSMUST00000164996.1	5	ENSMUSG00000090949	missense	V/I	624	Vmn2r77	ENSMUST00000164996.1:c.1870G>A	ENSMUSP00000129540.1:p.Val624Ile	H-2-Kb	9	8	4	LSYILLTSL	LSYVLLTSL	NetMHCpan	26.5	23.3	0.879	394	0.221	55.636	50.423	0.906	24.09	28.24	23.3	26.5	76.75558746	92.92017092	84.382036	83.03286055	SSC_p20	1.871428571	1.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.216	394	0	0	NA	7qD3	chr7-78477559-102443340	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr7	108066532	108066532	T	C	ENSMUST00000071658.2	NA	ENSMUSG00000063120	missense	M/V	89	Olfr480	ENSMUST00000071658.2:c.265A>G	ENSMUSP00000071583.2:p.Met89Val	H-2-Kb	9	10	2	PVYLFLSHL	PMYLFLSHL	SMM	27.74	12.797	0.461	276	0.203	31.825	25.891	0.814	28.38	30.85	39.4	32.8	12.79705392	27.74022632	23.40183969	47.56089297	SSC_p20	1.271428571	1.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.199	276	0	0	NA	7qE3	chr7-104329818-126292906	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	104411408	104411408	GT	G	ENSMUST00000076922.5	1	ENSMUSG00000030921	FS	N/X	387	Trim30a	ENSMUST00000076922.5:c.1160del	ENSMUSP00000076189.5:p.Asn387ThrfsTer21	H-2-Kb	9	18	0	KMYCFSLNV	NA	NetMHCpan	18.7	NA	NA	280	0.1	49.382	NA	NA	NA	36.23	NA	18.7	NA	62.53310593	NA	105.7426037	SSC_p20	1.1	1.1	FALSE	FALSE	FALSE	1	FALSE	0	Strelka2;Vardict	2	0.1	280	0	0	NA	7qE3	chr7-104329818-126292906	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.589678496	sgMsh2	cell line
chr7	62379763	62379763	AG	A	ENSMUST00000080403.6	NA	ENSMUSG00000056972	FS	R/X	805	Magel2	ENSMUST00000080403.6:c.2419del	ENSMUSP00000079265.5:p.Ala807HisfsTer67	H-2-Kb	9	47	0	SSLPLLMPL	NA	NetMHC	37.18	NA	NA	131	0.26	148.607	NA	NA	NA	37.18	NA	73.8	NA	223.4138023	NA	273.6843727	SSC_p20	1.985714286	1.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.275	131	0	0	NA	7qC	chr7-46263762-78463232	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr7	103740384	103740384	TG	T	ENSMUST00000213906.1	5	ENSMUSG00000047545	FS	P/X	285	Olfr629	ENSMUST00000213906.1:c.855del	ENSMUSP00000150688.1:p.Thr286LeufsTer19	H-2-Kb	9	4	9	ILYLLVSPL	ILYLLVSPT	NetMHCpan	36	1260.6	35.017	97	0.155	95.405	1109.018	11.624	1837.82	41.1	1260.6	36	957.4365443	165.6189397	752.0556875	149.7097207	SSC_p20	1.7	2.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.15	97	0	0	NA	7qE3	chr7-102446269-104329817	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	0.884517744	sgMsh2	cell line
chr7	103561109	103561109	G	A	ENSMUST00000215673.1	5	ENSMUSG00000073947	missense	D/N	211	Olfr615	ENSMUST00000215673.1:c.631G>A	ENSMUSP00000150166.1:p.Asp211Asn	H-2-Kb	9	4	8	VIFSFGVNF	VIFSFGVDF	NetMHCpan	42.3	148.3	3.506	201	0.194	60.077	160.513	2.672	163.95	45.49	148.3	42.3	157.0760603	74.66378462	165.6723376	97.55510484	SSC_p20	1.128571429	2.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.206	201	0	0	NA	7qE3	chr7-102446269-104329817	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	103418304	103418304	A	G	ENSMUST00000079348.3	1	ENSMUSG00000058976	missense	S/G	269	Usp17lc	ENSMUST00000079348.3:c.805A>G	ENSMUSP00000078323.3:p.Ser269Gly	H-2-Kb	9	10	2	VGYPEFLDL	VSYPEFLDL	NetMHCpan	39.3	16.9	0.43	482	0.255	113.749	40.856	0.359	20.32	61.06	16.9	39.3	61.39174812	176.2422384	62.84200023	166.4370463	SSC_p20	0.071428571	0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.249	482	0	0	NA	7qE3	chr7-102446269-104329817	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	104084873	104084873	G	A	ENSMUST00000057104.6	NA	ENSMUSG00000051340	missense	S/F	69	Olfr645	ENSMUST00000057104.6:c.206C>T	ENSMUSP00000062821.3:p.Ser69Phe	H-2-Kb	9	7	5	LSLLFVNDL	LSLLSVNDL	NetMHC	62.61	2365.54	37.782	137	0.197	209.242	1943.236	9.287	2365.54	62.61	2848.4	144.8	1520.932709	297.9270937	1291.962773	273.6843727	SSC_p20	1.628571429	2.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.184	137	0	0	NA	7qE3	chr7-102446269-104329817	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	86230157	86230157	G	T	ENSMUST00000165771.1	5	ENSMUSG00000091239	missense	L/I	312	Vmn2r76	ENSMUST00000165771.1:c.934C>A	ENSMUSP00000127309.1:p.Leu312Ile	H-2-Kb	9	11	1	IFNSFHGTL	LFNSFHGTL	NetMHC	90.6	323.06	3.566	148	0.277	213.074	517.132	2.427	323.06	90.6	536.4	171.4	497.86317	254.7475407	565.2622723	289.2344371	SSC_p20	-0.285714286	0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.281	148	0	0	NA	7qD3	chr7-78477559-102443340	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr7	41872661	41872661	T	C	ENSMUST00000171671.2	5	ENSMUSG00000090383	missense	I/V	4	Vmn2r58	ENSMUST00000171671.2:c.10A>G	ENSMUSP00000126966.1:p.Ile4Val	H-2-Kb	9	1	4	MFWVFTFGL	MFWIFTFGL	NetMHC	111.05	130.99	1.18	158	0.196	219.588	235.322	1.072	130.99	111.05	717.3	597.1	205.6411387	169.8673846	265.0025177	269.3084622	SSC_p20	1.657142857	1.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.197	158	0	0	NA	7qB3	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	105368670	105368670	A	C	ENSMUST00000217827.1	NA	ENSMUSG00000073906	missense	M/L	115	Olfr692	ENSMUST00000217827.1:c.343A>C	ENSMUSP00000151295.1:p.Met115Leu	H-2-Kb	9	9	3	IQLFFVHAL	IQMFFVHAL	NetMHCpan	43.2	24.8	0.574	174	0.293	275.107	251.953	0.916	112.84	125.35	24.8	43.2	415.0591573	450.9309038	391.0659467	424.864065	SSC_p20	2.285714286	2.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.298	174	0	0	NA	7qE3	chr7-104329818-126292906	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr7	104411408	104411408	GT	G	ENSMUST00000076922.5	1	ENSMUSG00000030921	FS	N/X	387	Trim30a	ENSMUST00000076922.5:c.1160del	ENSMUSP00000076189.5:p.Asn387ThrfsTer21	H-2-Kb	9	16	0	SNKMYCFSL	NA	NetMHCpan	99.9	NA	NA	280	0.1	229.968	NA	NA	NA	157.07	NA	99.9	NA	383.8044448	NA	302.8656361	SSC_p20	0.714285714	0.714285714	FALSE	FALSE	FALSE	1	FALSE	0	Strelka2;Vardict	2	0.1	280	0	0	NA	7qE3	chr7-104329818-126292906	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.589678496	sgMsh2	cell line
chr7	102877647	102877647	T	G	ENSMUST00000098216.1	NA	ENSMUSG00000073965	missense	S/A	176	Olfr568	ENSMUST00000098216.1:c.526T>G	ENSMUSP00000095818.1:p.Ser176Ala	H-2-Kb	9	8	4	LSHAYCYHV	LSHSYCYHV	NetMHC	182.81	126.32	0.691	214	0.266	404.02	295.538	0.731	126.32	182.81	205.5	217.5	385.5760057	636.9568317	462.6472659	590.540925	SSC_p20	-0.071428571	0.214285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe	3	0.262	214	0	0	NA	7qE3	chr7-102446269-104329817	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	103470347	103470347	T	A	ENSMUST00000213546.2	NA	ENSMUSG00000073948	missense	Y/N	103	Olfr608	ENSMUST00000213546.2:c.307T>A	ENSMUSP00000150595.1:p.Tyr103Asn	H-2-Kb	9	8	4	TQMNFIHTL	TQMYFIHTL	NetMHCpan	63.2	43.4	0.687	261	0.303	469.385	394.17	0.84	228.44	190.17	43.4	63.2	559.8993973	800.0368662	602.9065471	748.6003055	SSC_p20	0.8	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.298	261	0	0	NA	7qE3	chr7-102446269-104329817	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	64318302	64318302	T	C	ENSMUST00000032736.10	1	ENSMUSG00000030522	missense	M/T	293	Mtmr10	ENSMUST00000032736.10:c.878T>C	ENSMUSP00000032736.4:p.Met293Thr	H-2-Kb	9	6	6	SALVRTALI	SALVRMALI	NetMHC	196.41	93.2	0.475	166	0.205	265.638	197.08	0.742	93.2	196.41	193.2	363	200.9601749	246.6664026	201.0249672	284.6098982	SSC_p20	1.842857143	1.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.207	166	0	0	NA	7qC	chr7-46263762-78463232	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	41872661	41872661	T	C	ENSMUST00000171671.2	5	ENSMUSG00000090383	missense	I/V	4	Vmn2r58	ENSMUST00000171671.2:c.10A>G	ENSMUSP00000126966.1:p.Ile4Val	H-2-Kb	9	2	3	FWVFTFGLL	FWIFTFGLL	SMM	188.847	129.155	0.684	158	0.196	303.148	213.145	0.703	203.83	283.26	477.7	743.9	129.1546361	188.8469608	222.4590099	323.0353127	SSC_p20	2.328571429	2.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.197	158	0	0	NA	7qB3	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	102877647	102877647	T	G	ENSMUST00000098216.1	NA	ENSMUSG00000073965	missense	S/A	176	Olfr568	ENSMUST00000098216.1:c.526T>G	ENSMUSP00000095818.1:p.Ser176Ala	H-2-Kb	9	10	2	HAYCYHVDV	HSYCYHVDV	NetMHCpan	221.9	122.4	0.552	214	0.266	291.336	184.978	0.635	148.52	303.9	122.4	221.9	306.2739079	371.6293451	221.4369036	278.7725451	SSC_p20	0.228571429	0.228571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe	3	0.262	214	0	0	NA	7qE3	chr7-102446269-104329817	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	103740384	103740384	TG	T	ENSMUST00000213906.1	5	ENSMUSG00000047545	FS	P/X	285	Olfr629	ENSMUST00000213906.1:c.855del	ENSMUSP00000150688.1:p.Thr286LeufsTer19	H-2-Kb	9	12	1	LSIPWCMVL	NA	NetMHCpan	244.9	NA	NA	97	0.155	413.762	NA	NA	NA	357.36	NA	244.9	NA	591.7114865	NA	470.1646793	SSC_p20	2.057142857	2.057142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.15	97	0	0	NA	7qE3	chr7-102446269-104329817	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	0.884517744	sgMsh2	cell line
chr7	86585643	86585643	G	A	ENSMUST00000215365.1	3	ENSMUSG00000059319	missense	A/T	123	Olfr295	ENSMUST00000215365.1:c.367G>A	ENSMUSP00000150377.1:p.Ala123Thr	H-2-Kb	9	4	8	MAQDRYVTI	MAQDRYVAI	SMMPMBEC	399.255	370.894	0.929	391	0.223	423.855	403.247	0.951	327.37	419.11	435.6	428.6	454.0566075	482.0698829	370.8941642	399.2546657	SSC_p20	-0.685714286	-0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.228	391	0	0	NA	7qD3	chr7-78477559-102443340	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr7	104084873	104084873	G	A	ENSMUST00000057104.6	NA	ENSMUSG00000051340	missense	S/F	69	Olfr645	ENSMUST00000057104.6:c.206C>T	ENSMUSP00000062821.3:p.Ser69Phe	H-2-Kb	9	3	9	MYYFLSLLF	MYYFLSLLS	SMM	232.333	518.931	2.234	137	0.197	395.348	2593.63	6.56	4591.25	443.76	4080	1019.9	518.9314595	232.3325184	1107.260991	346.9365057	SSC_p20	2.128571429	2.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.184	137	0	0	NA	7qE3	chr7-102446269-104329817	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	45897436	45897436	C	T	ENSMUST00000069772.15	1	ENSMUSG00000002781	missense	L/F	9	Tmem143	ENSMUST00000069772.15:c.25C>T	ENSMUSP00000070405.7:p.Leu9Phe	H-2-Kb	9	1	9	MTVARWLRF	MTVARWLRL	SMMPMBEC	346.937	200.563	0.578	56	0.25	447.198	172.436	0.386	144.31	476.98	90.6	447.6	264.9171047	446.7967444	200.5626226	346.9365057	SSC_p20	0.385714286	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.236	56	0	0	NA	7qB3	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr7	45091511	45091511	C	A	ENSMUST00000019683.10	1	ENSMUSG00000019539	missense	A/S	58	Rcn3	ENSMUST00000019683.10:c.172G>T	ENSMUSP00000019683.3:p.Ala58Ser	H-2-Kb	9	5	7	FQYDHESFL	FQYDHEAFL	SMM	229.145	213.85	0.933	88	0.216	356.326	221.271	0.621	196.89	536.95	277.2	442.1	213.850367	229.1447967	228.6914879	270.5515336	SSC_p20	-0.814285714	-0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	88	0	0	NA	7qB3	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr7	103470347	103470347	T	A	ENSMUST00000213546.2	NA	ENSMUSG00000073948	missense	Y/N	103	Olfr608	ENSMUST00000213546.2:c.307T>A	ENSMUSP00000150595.1:p.Tyr103Asn	H-2-Kb	9	10	2	MNFIHTLCI	MYFIHTLCI	NetMHCpan	133.6	738.3	5.526	261	0.303	337.578	698.82	2.07	1791.99	738.55	738.3	133.6	659.3408748	375.0679891	523.901932	300.0889473	SSC_p20	2.028571429	2.028571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.298	261	0	0	NA	7qE3	chr7-102446269-104329817	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	86268842	86268842	T	A	ENSMUST00000217724.1	5	ENSMUSG00000057540	missense	N/Y	316	Olfr310	ENSMUST00000217724.1:c.946A>T	ENSMUSP00000151989.1:p.Asn316Tyr	H-2-Kb	9	6	6	FEYKRYIYF	FEYKRNIYF	SMM	101.417	750.084	7.396	95	0.232	429.431	2555.997	5.952	4361.91	754.57	5359.6	910.5	750.0841699	101.4168226	685.8829388	104.2917608	SSC_p20	-0.714285714	-0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.232	95	0	0	NA	7qD3	chr7-78477559-102443340	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr7	103561109	103561109	G	A	ENSMUST00000215673.1	5	ENSMUSG00000073947	missense	D/N	211	Olfr615	ENSMUST00000215673.1:c.631G>A	ENSMUSP00000150166.1:p.Asp211Asn	H-2-Kb	10	4	8	VIFSFGVNFL	VIFSFGVDFL	NetMHCpan	44.1	159.8	3.624	201	0.194	416.76	499.24	1.198	247.1	68.17	159.8	44.1	964.5616704	1110.017945	751.3806385	765.3498475	SSC_p20	1.271428571	2.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.206	201	0	0	NA	7qE3	chr7-102446269-104329817	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	112894458	112894458	A	G	ENSMUST00000059768.16	1	ENSMUSG00000055320	missense	I/M	397	Tead1	ENSMUST00000059768.16:c.1191A>G	ENSMUSP00000060671.9:p.Ile397Met	H-2-Db	9	4	8	SVLENFTML	SVLENFTIL	NetMHCpan	56.2	25.6	0.456	85	0.2	93.041	86.275	0.927	63.25	79.76	25.6	56.2	109.2999592	106.3212319	142.7479894	150.5116095	SSC_p20	0.657142857	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.203	85	0	0	NA	7qF1	chr7-104329818-126292906	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	140336044	140336044	C	A	ENSMUST00000214858.1	5	ENSMUSG00000062782	missense	L/M	61	Olfr527	ENSMUST00000214858.1:c.181C>A	ENSMUSP00000149080.1:p.Leu61Met	H-2-Db	9	9	3	FFMVNLAIV	FFLVNLAIV	SMM	105.833	95.856	0.906	370	0.216	165.454	168.878	1.021	197.29	176.89	1124.6	642.8	95.85615401	105.8327302	140.4656069	154.0174753	SSC_p20	2.414285714	2.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.222	370	0	0	NA	7qF4	chr7-139614769-145323643	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr7	121500719	121500719	T	C	ENSMUST00000084628.4	1	ENSMUSG00000046321	missense	Y/H	263	Hs3st2	ENSMUST00000084628.4:c.787T>C	ENSMUSP00000081678.3:p.Tyr263His	H-2-Kb	8	7	5	SWLRHFPL	SWLRYFPL	NetMHC	37.55	13.18	0.351	82	0.293	82.172	20.056	0.244	13.18	37.55	43.5	118.3	20.21808416	78.29607656	19.89481935	86.04784535	SSC_p20	0.028571429	0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.288	82	0	0	NA	7qF2	chr7-104329818-126292906	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr8	3851259	3851259	T	C	ENSMUST00000033888.4	1	ENSMUSG00000040197	missense	S/G	132	Cd209e	ENSMUST00000033888.4:c.394A>G	ENSMUSP00000033888.4:p.Ser132Gly	H-2-Kb	8	10	2	NGYTWMGL	NSYTWMGL	NetMHC	74.4	17.07	0.229	222	0.248	112.328	35.265	0.314	17.07	74.4	26.4	96.5	48.05515695	143.1330745	44.13061706	128.1563117	SSC_p20	0.285714286	0.285714286	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.259	222	0	0	NA	8qA1.1	chr8-3154030-15113963	6	4	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr7	140336044	140336044	C	A	ENSMUST00000214858.1	5	ENSMUSG00000062782	missense	L/M	61	Olfr527	ENSMUST00000214858.1:c.181C>A	ENSMUSP00000149080.1:p.Leu61Met	H-2-Kb	8	7	5	MYFFMVNL	MYFFLVNL	NetMHCpan	54.1	64	1.183	370	0.216	88.007	92.533	1.051	151.9	127.61	64	54.1	87.8496428	84.86722465	97.21650414	91.14650073	SSC_p20	1.528571429	1.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.222	370	0	0	NA	7qF4	chr7-139614769-145323643	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr7	127905762	127905762	T	C	ENSMUST00000071056.13	1	ENSMUSG00000030802	missense	I/T	130	Bckdk	ENSMUST00000071056.13:c.389T>C	ENSMUSP00000070345.7:p.Ile130Thr	H-2-Kb	8	10	2	YTRAFQKL	YIRAFQKL	NetMHCpan	121.7	137.9	1.133	246	0.228	139.122	142.352	1.023	95.73	131.44	137.9	121.7	146.8047136	146.8047136	188.2521739	180.6092545	SSC_p20	-0.6	-0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.223	246	0	0	NA	7qF3	chr7-126299126-127946235	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr7	131116641	131116641	T	A	ENSMUST00000208311.2	1	ENSMUSG00000047517	missense	V/D	1697	Dmbt1	ENSMUST00000208311.2:c.5090T>A	ENSMUSP00000146685.1:p.Val1697Asp	H-2-Kb	8	5	7	SNFLRADV	SNFLRAVV	NetMHCpan	182.2	77.5	0.425	144	0.208	287.774	202.579	0.704	163.2	205.09	77.5	182.2	241.9580078	370.458872	261.0597994	383.4775994	SSC_p20	0.157142857	0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.207	144	0	0	NA	7qF3	chr7-127946236-139614764	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr8	70174385	70174385	G	A	ENSMUST00000002413.14	1	ENSMUSG00000002342	missense	R/H	29	Tmem161a	ENSMUST00000002413.14:c.86G>A	ENSMUSP00000002413.8:p.Arg29His	H-2-Kb	8	7	5	CSFAHWLL	CSFARWLL	NetMHCpan	55.4	97.3	1.756	84	0.476	78.662	371.36	4.721	346.68	214.88	97.3	55.4	396.0408646	60.77710368	506.6872779	96.54727043	SSC_p20	1.042857143	1.042857143	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.493	84	0	0	NA	8qB3.3	chr8-69796732-72753900	6	4	2	0.9	5.307106465	RARE KARYOTYPE	3	1	sgMsh2	cell line
chr7	108714066	108714066	C	A	ENSMUST00000074730.3	NA	ENSMUSG00000056946	missense	L/M	238	Olfr512	ENSMUST00000074730.3:c.712C>A	ENSMUSP00000074291.4:p.Leu238Met	H-2-Kb	8	6	6	ILFTIMRM	ILFTILRM	NetMHCpan	74.1	112.6	1.52	340	0.25	290.124	605.685	2.088	729.71	264.21	112.6	74.1	758.1235717	462.1042896	481.6593553	316.0385059	SSC_p20	1.385714286	1.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.252	340	0	0	NA	7qE3	chr7-104329818-126292906	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	133647391	133647391	A	C	ENSMUST00000051169.12	1	ENSMUSG00000039990	missense	D/A	315	Edrf1	ENSMUST00000051169.12:c.944A>C	ENSMUSP00000059166.6:p.Asp315Ala	H-2-Kb	8	5	7	ILWTFEAI	ILWTFEDI	NetMHCpan	143.6	666.9	4.644	154	0.208	243.791	865.203	3.549	1538.59	342.65	666.9	143.6	1063.506136	294.9442949	636.4144033	192.6371303	SSC_p20	1.114285714	1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.21	154	0	0	NA	7qF3	chr7-127946236-139614764	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	126998574	126998574	A	G	ENSMUST00000165096.8	1	ENSMUSG00000030681	missense	V/A	124	Mvp	ENSMUST00000165096.8:c.371T>C	ENSMUSP00000127250.2:p.Val124Ala	H-2-Kb	8	5	7	ITPLQVAL	ITPLQVVL	SMM	208.324	490.614	2.355	128	0.188	361.112	827.469	2.291	2006.7	401.05	932.6	459.9	490.6140712	208.324333	722.337231	321.1737185	SSC_p20	1.114285714	1.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	128	0	0	NA	7qF3	chr7-126299126-127946235	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	112894458	112894458	A	G	ENSMUST00000059768.16	1	ENSMUSG00000055320	missense	I/M	397	Tead1	ENSMUST00000059768.16:c.1191A>G	ENSMUSP00000060671.9:p.Ile397Met	H-2-Kb	8	5	7	VLENFTML	VLENFTIL	SMMPMBEC	161.711	473.958	2.931	85	0.2	278.293	630.111	2.264	1938.31	461.24	683.8	334.9	576.4212727	221.6868845	473.9581548	161.7111628	SSC_p20	0.657142857	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.203	85	0	0	NA	7qF1	chr7-104329818-126292906	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr8	95011799	95011799	T	C	ENSMUST00000179619.8	1	ENSMUSG00000031785	missense	I/T	640	Adgrg1	ENSMUST00000179619.8:c.1919T>C	ENSMUSP00000137520.1:p.Ile640Thr	H-2-Kb	8	4	8	ILYLFSIT	ILYLFSII	NetMHCpan	212.2	23.2	0.109	119	0.202	278.752	51.506	0.185	34.03	483.33	23.2	212.2	75.63799359	331.6958211	68.98267002	225.8083514	SSC_p20	1.728571429	2.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.202	119	0	0	NA	8qC5	chr8-94346062-127324475	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr8	12812332	12812332	A	G	ENSMUST00000091237.11	1	ENSMUSG00000031441	missense	I/M	61	Atp11a	ENSMUST00000091237.11:c.183A>G	ENSMUSP00000088779.5:p.Ile61Met	H-2-Kb	8	8	4	WNFMPKNL	WNFIPKNL	SMMPMBEC	260.459	296.306	1.138	246	0.195	332.995	416.103	1.25	868.92	618.87	535.9	372.4	268.9923939	293.5891489	296.3056959	260.4593785	SSC_p20	-0.571428571	-0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.201	246	0	0	NA	8qA1.1	chr8-3154030-15113963	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr8	71684012	71684012	AG	A	ENSMUST00000051995.13	1	ENSMUSG00000031805	FS	E/X	654	Jak3	ENSMUST00000051995.13:c.1967del	ENSMUSP00000060073.7:p.Gly656ValfsTer10	H-2-Kb	8	13	1	VMGIHLSL	NA	NetMHCpan	418.4	NA	NA	141	0.262	495.285	NA	NA	NA	641.33	NA	418.4	NA	483.8825938	NA	506.6872779	SSC_p20	1.371428571	1.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.253	141	0	0	NA	8qB3.3	chr8-69796732-72753900	6	4	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr7	119578155	119578155	G	T	ENSMUST00000098084.10	1	ENSMUSG00000030945	missense	A/S	298	Acsm2	ENSMUST00000098084.10:c.892G>T	ENSMUSP00000095690.3:p.Ala298Ser	H-2-Kb	8	6	6	MNILGSFL	MNILGAFL	NetMHCpan	402.6	189.5	0.471	158	0.228	492.911	212.831	0.432	522.72	1647.75	189.5	402.6	220.6683258	498.5859086	204.9934573	487.2367077	SSC_p20	1.457142857	1.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.232	158	0	0	NA	7qF2	chr7-104329818-126292906	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	127051630	127051630	A	G	ENSMUST00000205424.1	2	ENSMUSG00000049350	missense	V/A	62	Zg16	ENSMUST00000205424.1:c.185T>C	ENSMUSP00000145876.1:p.Val62Ala	H-2-Kb	9	5	7	VNRYYIAGL	VNRYYIVGL	NetMHC	8.72	32.43	3.719	179	0.229	35.986	58.881	1.636	32.43	8.72	19.1	12.8	85.33162183	59.17114865	94.67820161	69.86344547	SSC_p20	0.371428571	0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.221	179	0	0	NA	7qF3	chr7-126299126-127946235	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr7	112894458	112894458	A	G	ENSMUST00000059768.16	1	ENSMUSG00000055320	missense	I/M	397	Tead1	ENSMUST00000059768.16:c.1191A>G	ENSMUSP00000060671.9:p.Ile397Met	H-2-Kb	9	4	8	SVLENFTML	SVLENFTIL	NetMHC	37.75	108.04	2.862	85	0.2	129.396	187.961	1.453	108.04	37.75	126.4	65.1	249.5226649	193.6912491	309.920283	217.3952246	SSC_p20	0.657142857	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.203	85	0	0	NA	7qF1	chr7-104329818-126292906	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr8	58911410	58911410	A	G	ENSMUST00000204128.2	5	ENSMUSG00000096914	missense	L/P	22	Galntl6	ENSMUST00000204128.2:c.65T>C	ENSMUSP00000145321.1:p.Leu22Pro	H-2-Kb	9	6	6	VALIFPPNI	VALIFLPNI	NetMHCpan	44.3	22.9	0.517	123	0.114	135.576	58.125	0.429	21.15	51.31	22.9	44.3	93.34907095	219.8416627	103.3356082	246.7459312	SSC_p20	1.271428571	1.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.112	123	0	0	NA	8qB2	chr8-21702348-69796731	5	4	1	0.9	5.307106465	RARE KARYOTYPE	1	0.660439916	sgMsh2	cell line
chr8	12812332	12812332	A	G	ENSMUST00000091237.11	1	ENSMUSG00000031441	missense	I/M	61	Atp11a	ENSMUST00000091237.11:c.183A>G	ENSMUSP00000088779.5:p.Ile61Met	H-2-Kb	9	3	9	SKYTFWNFM	SKYTFWNFI	NetMHC	57.07	114.61	2.008	246	0.195	94.704	167.079	1.764	114.61	57.07	120.8	76.4	213.3585248	113.0082111	230.8075441	135.2851103	SSC_p20	0.157142857	0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.201	246	0	0	NA	8qA1.1	chr8-3154030-15113963	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	118543426	118543426	T	C	ENSMUST00000044195.5	1	ENSMUSG00000042246	missense	S/G	580	Tmc7	ENSMUST00000044195.5:c.1738A>G	ENSMUSP00000046927.4:p.Ser580Gly	H-2-Kb	9	4	8	IFYVKELGL	IFYVKELSL	SMM	58.359	65.48	1.122	85	0.224	68.619	75.602	1.102	72.09	59.39	106.1	128.9	65.48020042	58.35929005	79.11339102	77.84845538	SSC_p20	0.385714286	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.232	85	0	0	NA	7qF1	chr7-104329818-126292906	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	140336044	140336044	C	A	ENSMUST00000214858.1	5	ENSMUSG00000062782	missense	L/M	61	Olfr527	ENSMUST00000214858.1:c.181C>A	ENSMUSP00000149080.1:p.Leu61Met	H-2-Kb	9	6	6	PMYFFMVNL	PMYFFLVNL	SMM	27.046	20.659	0.764	370	0.216	58.129	61.772	1.063	94.62	83.88	106.9	97.4	20.65903351	27.04643321	28.92344371	32.3779986	SSC_p20	1.528571429	1.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.222	370	0	0	NA	7qF4	chr7-139614769-145323643	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr8	95011799	95011799	T	C	ENSMUST00000179619.8	1	ENSMUSG00000031785	missense	I/T	640	Adgrg1	ENSMUST00000179619.8:c.1919T>C	ENSMUSP00000137520.1:p.Ile640Thr	H-2-Kb	9	10	2	ITTSFQGFL	IITSFQGFL	NetMHC	102.57	106.52	1.039	119	0.202	314.657	287.388	0.913	106.52	102.57	152	128	422.7756832	501.3141926	543.5631415	596.0051329	SSC_p20	0.571428571	0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.202	119	0	0	NA	8qC5	chr8-94346062-127324475	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr8	70166623	70166623	T	C	ENSMUST00000110146.8	1	ENSMUSG00000079033	missense	Y/H	223	Mef2b	ENSMUST00000110146.8:c.667T>C	ENSMUSP00000105773.2:p.Tyr223His	H-2-Kb	9	6	6	TSRSLHSGL	TSRSLYSGL	NetMHC	119.27	18.07	0.152	73	0.123	355.407	81.198	0.228	18.07	119.27	71.8	458.5	90.59620379	317.0370367	123.381487	393.7766863	SSC_p20	-0.3	-0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.149	73	0	0	NA	8qB3.3	chr8-69796732-72753900	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	0.878620959	sgMsh2	cell line
chr7	117549082	117549082	T	C	ENSMUST00000032892.6	1	ENSMUSG00000030657	missense	F/L	294	Xylt1	ENSMUST00000032892.6:c.880T>C	ENSMUSP00000032892.5:p.Phe294Leu	H-2-Kb	9	3	9	LMPEKVARL	LMPEKVARF	NetMHC	173.46	659.31	3.801	134	0.239	295.639	583.799	1.975	659.31	173.46	988.5	403.9	508.2881677	301.3769268	501.4758232	289.9011913	SSC_p20	-0.528571429	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.218	134	0	0	NA	7qF1	chr7-104329818-126292906	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	121500719	121500719	T	C	ENSMUST00000084628.4	1	ENSMUSG00000046321	missense	Y/H	263	Hs3st2	ENSMUST00000084628.4:c.787T>C	ENSMUSP00000081678.3:p.Tyr263His	H-2-Kb	9	6	6	ESWLRHFPL	ESWLRYFPL	NetMHCpan	163.3	62.2	0.381	82	0.293	193.474	60.222	0.311	49.75	201.06	62.2	163.3	69.20062231	242.1642333	58.24383998	185.8874201	SSC_p20	0.028571429	0.028571429	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.288	82	0	0	NA	7qF2	chr7-104329818-126292906	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr7	135152261	135152261	C	T	ENSMUST00000084488.4	5	ENSMUSG00000058325	missense	A/V	1589	Dock1	ENSMUST00000084488.4:c.4766C>T	ENSMUSP00000081531.4:p.Ala1589Val	H-2-Kb	9	11	1	VLRPFHERM	ALRPFHERM	NetMHCpan	84.2	315.4	3.746	99	0.212	423.221	1393.102	3.292	1094.79	233.74	315.4	84.2	1897.186388	638.4251688	1691.414308	612.7029904	SSC_p20	-1.8	-0.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.217	99	0	0	NA	7qF3	chr7-127946236-139614764	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	121500719	121500719	T	C	ENSMUST00000084628.4	1	ENSMUSG00000046321	missense	Y/H	263	Hs3st2	ENSMUST00000084628.4:c.787T>C	ENSMUSP00000081678.3:p.Tyr263His	H-2-Kb	9	7	5	SWLRHFPLA	SWLRYFPLA	SMM	266.14	213.359	0.802	82	0.293	344.75	238.779	0.693	209.94	300.23	264.2	640.1	213.3585248	266.1399065	309.920283	389.2691619	SSC_p20	0.414285714	0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.288	82	0	0	NA	7qF2	chr7-104329818-126292906	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr7	140336044	140336044	C	A	ENSMUST00000214858.1	5	ENSMUSG00000062782	missense	L/M	61	Olfr527	ENSMUST00000214858.1:c.181C>A	ENSMUSP00000149080.1:p.Leu61Met	H-2-Kb	9	4	8	HTPMYFFMV	HTPMYFFLV	NetMHCpan	201.1	175.6	0.873	370	0.216	470.61	422.008	0.897	322.69	307.19	175.6	201.1	521.3267383	634.0302809	641.5787927	693.8250889	SSC_p20	1.528571429	1.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.222	370	0	0	NA	7qF4	chr7-139614769-145323643	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr7	128682320	128682320	T	C	ENSMUST00000043138.12	1	ENSMUSG00000042105	missense	Y/H	548	Inpp5f	ENSMUST00000043138.12:c.1642T>C	ENSMUSP00000045910.6:p.Tyr548His	H-2-Kb	9	8	4	ANRHYLSRF	ANRYYLSRF	SMM	213.359	159.628	0.748	182	0.225	273.396	175.803	0.643	148.49	318.1	293.9	583.8	159.628341	213.3585248	191.9773533	228.6914879	SSC_p20	-1.1	-1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.228	182	0	0	NA	7qF3	chr7-127946236-139614764	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	108323210	108323210	TC	T	ENSMUST00000079865.4	NA	ENSMUSG00000109497	FS	G/X	155	Olfr492	ENSMUST00000079865.4:c.465del	ENSMUSP00000146417.1:p.Ile156PhefsTer8	H-2-Kb	9	4	9	VVGSYTGGF	VVGSYTGGI	SMM	304.166	447.827	1.472	465	0.198	412.088	510.787	1.24	500.08	434.01	1180.3	1234.5	447.8267173	304.1655332	521.4948213	390.1665199	SSC_p20	-0.171428571	0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1978	465	0	0	NA	7qE3	chr7-104329818-126292906	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	108323210	108323210	TC	T	ENSMUST00000079865.4	NA	ENSMUSG00000109497	FS	G/X	155	Olfr492	ENSMUST00000079865.4:c.465del	ENSMUSP00000146417.1:p.Ile156PhefsTer8	H-2-Kb	9	8	5	YTGGFLMLL	YTGGILNAS	SMM	369.071	10211.981	27.669	465	0.198	457.608	21847.942	47.744	30461.92	456.81	28198.8	769.2	10211.98104	369.0710667	15497.08446	458.4056903	SSC_p20	2.185714286	2.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1978	465	0	0	NA	7qE3	chr7-104329818-126292906	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	38368241	38368241	C	T	ENSMUST00000052085.1	NA	ENSMUSG00000049864	missense	L/F	232	Olfr250	ENSMUST00000052085.1:c.694C>T	ENSMUSP00000051631.1:p.Leu232Phe	H-2-Db	9	7	5	YALIFVNVI	YALILVNVI	NetMHC	68.36	31.31	0.458	174	0.224	328.506	149.279	0.454	31.31	68.36	145.6	288.4	193.9188379	500.7488954	152.9572264	368.6124504	SSC_p20	2.928571429	2.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	174	0	0	NA	9qA5.1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	36743507	36743507	A	T	ENSMUST00000120381.8	1	ENSMUSG00000032116	missense	I/N	488	Stt3a	ENSMUST00000120381.8:c.1463T>A	ENSMUSP00000113116.1:p.Ile488Asn	H-2-Db	9	7	5	SSPSNVLSA	SSPSIVLSA	NetMHC	215.14	29006.74	134.827	102	0.284	399.173	26766.18	67.054	29006.74	215.14	9763.2	280	24525.62028	518.3462966	33850.88286	692.7395769	SSC_p20	0.442857143	0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.282	102	0	0	NA	9qA4	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr9	39184623	39184623	T	G	ENSMUST00000071617.5	3	ENSMUSG00000094970	missense	I/M	148	Olfr943	ENSMUST00000071617.5:c.444T>G	ENSMUSP00000071545.5:p.Ile148Met	H-2-Db	9	8	4	TSLMLGVYI	TSLILGVYI	NetMHC	237.86	368.7	1.55	351	0.248	315.564	360.381	1.142	368.7	237.86	1437.9	872.3	352.0626876	341.6803474	292.799277	289.4476314	SSC_p20	2.357142857	2.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.255	351	0	0	NA	9qA5.1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr8	123200246	123200246	CA	C	ENSMUST00000019422.5	1	ENSMUSG00000019278	FS	N/X	270	Dpep1	ENSMUST00000019422.5:c.809del	ENSMUSP00000019422.4:p.Asn270ThrfsTer55	H-2-Db	9	45	0	IMMVLLCFL	NA	SMM	225.227	NA	NA	137	0.482	296.801	NA	NA	NA	330.23	NA	2081.1	NA	225.2267655	NA	263.3722415	SSC_p20	3.257142857	3.257142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.486	137	0	0	NA	8qE1	chr8-94346062-127324475	6	4	2	0.9	5.307106465	RARE KARYOTYPE	3	1	sgMsh2	cell line
chr9	42377887	42377887	A	G	ENSMUST00000042190.13	1	ENSMUSG00000037705	missense	C/R	461	Tecta	ENSMUST00000042190.13:c.1381T>C	ENSMUSP00000040262.7:p.Cys461Arg	H-2-Db	9	11	1	RGNYNKNPL	CGNYNKNPL	SMMPMBEC	308.724	530.359	1.718	74	0.23	403.896	622.878	1.542	1012.3	429.68	665.5	809.3	580.2564812	378.111599	530.3590695	308.7237209	SSC_p20	-1.928571429	-1.928571429	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.25	74	0	0	NA	9qA5.1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr8	123199101	123199101	A	G	ENSMUST00000019422.5	1	ENSMUSG00000019278	missense	I/M	98	Dpep1	ENSMUST00000019422.5:c.294A>G	ENSMUSP00000019422.4:p.Ile98Met	H-2-Db	9	10	2	RMLEQMDVI	RILEQMDVI	SMMPMBEC	318.105	2210.905	6.95	133	0.226	496.966	3897.91	7.843	10393.67	543.51	4023.4	674.5	3772.419664	450.4224204	2210.904583	318.1046371	SSC_p20	0.557142857	0.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.219	133	0	0	NA	8qE1	chr8-94346062-127324475	6	4	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr9	7171000	7171000	A	G	ENSMUST00000140466.7	5	ENSMUSG00000047193	missense	Y/H	210	Dync2h1	ENSMUST00000140466.7:c.628T>C	ENSMUSP00000120007.1:p.Tyr210His	H-2-Kb	8	6	6	ISREFHNL	ISREFYNL	NetMHC	4.75	3.13	0.659	67	0.224	5.557	4.132	0.744	3.13	4.75	5.5	8	3.481288376	4.794463315	4.783436356	6.320333573	SSC_p20	-1.271428571	-1.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	67	0	0	NA	9qA1	chr9-4330518-20646946	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	14464244	14464244	CT	C	ENSMUST00000058796.6	1	ENSMUSG00000053914	FS	K/X	106	Kdm4d	ENSMUST00000058796.6:c.317del	ENSMUSP00000061632.6:p.Lys106SerfsTer62	H-2-Kb	8	33	0	MSHRFMVL	NA	NetMHC	10.85	NA	NA	139	0.281	15.839	NA	NA	NA	10.85	NA	11.6	NA	20.07890385	NA	21.56453014	SSC_p20	0.6	0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.273	139	0	0	NA	9qA2	chr9-4330518-20646946	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr9	28404310	28404310	T	C	ENSMUST00000073822.5	5	ENSMUSG00000062257	missense	L/P	22	Opcml	ENSMUST00000073822.5:c.65T>C	ENSMUSP00000073493.5:p.Leu22Pro	H-2-Kb	8	6	6	VSLRLPFL	VSLRLLFL	NetMHC	19.04	36.92	1.939	111	0.144	34.628	42.35	1.223	36.92	19.04	48.8	35	38.70258739	34.25626424	45.99811133	41.85429201	SSC_p20	1.042857143	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.149	111	0	0	NA	9qA4	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.878620959	sgMsh2	cell line
chr9	20260333	20260333	G	T	ENSMUST00000086474.5	2	ENSMUSG00000066897	missense	L/F	164	Olfr872	ENSMUST00000086474.5:c.492G>T	ENSMUSP00000083665.4:p.Leu164Phe	H-2-Kb	8	7	5	LASVFASL	LASVLASL	NetMHC	27.53	1510.89	54.882	215	0.233	70.725	1252.196	17.705	1510.89	27.53	1021.1	35.1	1370.061303	129.9391436	1134.33152	106.3506136	SSC_p20	1.828571429	1.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.235	215	0	0	NA	9qA3	chr9-4330518-20646946	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	39819815	39819815	A	G	ENSMUST00000215922.1	3	ENSMUSG00000095774	missense	M/V	59	Olfr970	ENSMUST00000215922.1:c.175A>G	ENSMUSP00000150325.1:p.Met59Val	H-2-Kb	8	11	1	VYYFLSSL	MYYFLSSL	NetMHCpan	10.7	21.8	2.037	319	0.273	46.139	104.061	2.255	83.17	33.7	21.8	10.7	124.9510759	58.5787365	143.7937467	67.8797134	SSC_p20	0.885714286	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.277	319	0	0	NA	9qA5.1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr9	38368241	38368241	C	T	ENSMUST00000052085.1	NA	ENSMUSG00000049864	missense	L/F	232	Olfr250	ENSMUST00000052085.1:c.694C>T	ENSMUSP00000051631.1:p.Leu232Phe	H-2-Kb	8	5	7	SSYALIFV	SSYALILV	NetMHC	35.19	31.57	0.897	174	0.224	70.495	88.305	1.253	31.57	35.19	86.3	100.8	90.31086459	59.94321055	116.0753495	81.04757034	SSC_p20	2.142857143	2.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	174	0	0	NA	9qA5.1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	38368241	38368241	C	T	ENSMUST00000052085.1	NA	ENSMUSG00000049864	missense	L/F	232	Olfr250	ENSMUST00000052085.1:c.694C>T	ENSMUSP00000051631.1:p.Leu232Phe	H-2-Kb	8	7	5	YALIFVNV	YALILVNV	NetMHC	39.78	1223.77	30.763	174	0.224	90.091	1140.658	12.661	1223.77	39.78	1212.9	90.7	943.4958625	89.4828896	1068.415057	100.1705365	SSC_p20	2.542857143	2.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	174	0	0	NA	9qA5.1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	44333095	44333095	A	C	ENSMUST00000054708.4	1	ENSMUSG00000032123	missense	Q/H	402	Dpagt1	ENSMUST00000054708.4:c.1206A>C	ENSMUSP00000056282.3:p.Gln402His	H-2-Kb	8	8	6	FSIRYHLV	FSIRYQLV	NetMHC	46.29	25.9	0.56	144	0.181	72.129	87.371	1.211	25.9	46.29	67.9	59	106.8415057	85.25895396	121.2662646	89.07175307	SSC_p20	0.385714286	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	144	0	0	NA	9qA5.2	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr8	123200246	123200246	CA	C	ENSMUST00000019422.5	1	ENSMUSG00000019278	FS	N/X	270	Dpep1	ENSMUST00000019422.5:c.809del	ENSMUSP00000019422.4:p.Asn270ThrfsTer55	H-2-Kb	8	5	7	MVNFFSTL	MVNFFSNF	NetMHCpan	19.1	114.7	6.005	137	0.482	58.936	264.197	4.483	222.38	56.25	114.7	19.1	337.0854446	61.62259741	306.013087	69.6209588	SSC_p20	1.228571429	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.486	137	0	0	NA	8qE1	chr8-94346062-127324475	6	4	2	0.9	5.307106465	RARE KARYOTYPE	3	1	sgMsh2	cell line
chr9	39819815	39819815	A	G	ENSMUST00000215922.1	3	ENSMUSG00000095774	missense	M/V	59	Olfr970	ENSMUST00000215922.1:c.175A>G	ENSMUSP00000150325.1:p.Met59Val	H-2-Kb	8	4	8	SSHLHTPV	SSHLHTPM	NetMHC	61.36	50.46	0.822	319	0.273	145.171	151.98	1.047	50.46	61.36	145.2	184.7	158.7596015	141.4946437	160.9681675	148.8469706	SSC_p20	-0.214285714	-0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.277	319	0	0	NA	9qA5.1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr9	9180096	9180096	GA	G	ENSMUST00000093893.11	1	ENSMUSG00000050730	FS	S/X	61	Arhgap42	ENSMUST00000093893.11:c.181del	ENSMUSP00000091419.4:p.Ser61ProfsTer27	H-2-Kb	8	6	6	AVQKFPSL	AVQKFSQS	NetMHCpan	56.4	11065.3	196.193	84	0.214	117.909	6487.005	55.017	11389.22	73.36	11065.3	56.4	1485.04632	162.4575876	1908.710225	176.9049561	SSC_p20	0.142857143	0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.224	84	0	0	NA	9qA1	chr9-4330518-20646946	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	38026663	38026663	T	C	ENSMUST00000072974.1	NA	ENSMUSG00000094461	missense	F/L	286	Olfr883	ENSMUST00000072974.1:c.856T>C	ENSMUSP00000072741.1:p.Phe286Leu	H-2-Kb	8	4	8	VGPMLNPL	VGPMLNPF	NetMHC	89.87	2493.18	27.742	236	0.203	195.878	2841.404	14.506	2493.18	89.87	941	145.3	4006.268017	246.456343	3189.627742	253.9451951	SSC_p20	0.342857143	0.4	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.209	236	0	0	NA	9qA4	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr8	123200246	123200246	CA	C	ENSMUST00000019422.5	1	ENSMUSG00000019278	FS	N/X	270	Dpep1	ENSMUST00000019422.5:c.809del	ENSMUSP00000019422.4:p.Asn270ThrfsTer55	H-2-Kb	8	30	0	TSRRWQAL	NA	NetMHC	100.21	NA	NA	137	0.482	107.878	NA	NA	NA	100.21	NA	460.2	NA	104.6501849	NA	111.1066364	SSC_p20	-1.228571429	-1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.486	137	0	0	NA	8qE1	chr8-94346062-127324475	6	4	2	0.9	5.307106465	RARE KARYOTYPE	3	1	sgMsh2	cell line
chr9	39819815	39819815	A	G	ENSMUST00000215922.1	3	ENSMUSG00000095774	missense	M/V	59	Olfr970	ENSMUST00000215922.1:c.175A>G	ENSMUSP00000150325.1:p.Met59Val	H-2-Kb	8	8	4	HTPVYYFL	HTPMYYFL	NetMHCpan	118	108.3	0.918	319	0.273	156.094	151.127	0.968	132.14	151.22	108.3	118	190.8710225	160.9681675	170.1139779	162.832091	SSC_p20	0.842857143	0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.277	319	0	0	NA	9qA5.1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr9	42415852	42415852	CA	C	ENSMUST00000066148.11	1	ENSMUSG00000037287	FS	F/X	418	Tbcel	ENSMUST00000066148.11:c.1254del	ENSMUSP00000067882.5:p.Phe418LeufsTer32	H-2-Kb	8	34	0	VCFQRAFL	NA	SMMPMBEC	73.239	NA	NA	69	0.188	113.085	NA	NA	NA	165.58	NA	122	NA	104.169361	NA	73.23859428	SSC_p20	0.814285714	0.871428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.196	69	0	0	NA	9qA5.1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	39258136	39258136	A	C	ENSMUST00000076903.2	NA	ENSMUSG00000063380	missense	C/G	182	Olfr945	ENSMUST00000076903.2:c.544T>G	ENSMUSP00000076169.2:p.Cys182Gly	H-2-Kb	8	6	6	INHYFGDI	INHYFCDI	NetMHCpan	102	90.9	0.891	264	0.409	276.289	313.213	1.134	217.41	182.12	90.9	102	466.380088	456.8146256	409.0157201	370.458872	SSC_p20	-0.657142857	-0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.408	264	0	0	NA	9qA5.1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr9	44333095	44333095	A	C	ENSMUST00000054708.4	1	ENSMUSG00000032123	missense	Q/H	402	Dpagt1	ENSMUST00000054708.4:c.1206A>C	ENSMUSP00000056282.3:p.Gln402His	H-2-Kb	8	10	4	IRYHLVRL	IRYQLVRL	SMMPMBEC	89.896	62.05	0.69	144	0.181	146.157	90.077	0.616	114.73	189.1	280.1	212.5	65.42443789	103.2143305	62.04974485	89.89592386	SSC_p20	-0.242857143	-0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	144	0	0	NA	9qA5.2	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	39184623	39184623	T	G	ENSMUST00000071617.5	3	ENSMUSG00000094970	missense	I/M	148	Olfr943	ENSMUST00000071617.5:c.444T>G	ENSMUSP00000071545.5:p.Ile148Met	H-2-Kb	8	5	7	QIYTSLML	QIYTSLIL	NetMHC	199.22	851.53	4.274	351	0.248	279.862	752.265	2.688	851.53	199.22	653	314.4	637.88149	245.323979	1249.510759	426.324214	SSC_p20	1.6	1.6	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.255	351	0	0	NA	9qA5.1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	21589965	21589965	A	T	ENSMUST00000034700.14	1	ENSMUSG00000032182	missense	S/T	236	Yipf2	ENSMUST00000034700.14:c.706T>A	ENSMUSP00000034700.7:p.Ser236Thr	H-2-Kb	8	8	4	LALTAAGL	LALSAAGL	NetMHC	241.92	271.62	1.123	80	0.15	348.652	375.733	1.078	271.62	241.92	423.5	371	385.2476516	357.8821189	366.2182643	339.4220093	SSC_p20	1.7	1.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.155	80	0	0	NA	9qA3	chr9-20655102-22114234	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.914001669	sgMsh2	cell line
chr9	19808619	19808619	G	T	ENSMUST00000217280.1	5	ENSMUSG00000095448	missense	Q/H	100	Olfr859	ENSMUST00000217280.1:c.300G>T	ENSMUSP00000151076.1:p.Gln100His	H-2-Kb	8	10	2	THVSFFIL	TQVSFFIL	NetMHCpan	197.8	154.3	0.78	445	0.231	380.489	316.456	0.832	294.27	373.06	154.3	197.8	338.6413603	387.9180607	350.5419514	430.2689433	SSC_p20	2.014285714	2.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.229	445	0	0	NA	9qA3	chr9-4330518-20646946	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	38368241	38368241	C	T	ENSMUST00000052085.1	NA	ENSMUSG00000049864	missense	L/F	232	Olfr250	ENSMUST00000052085.1:c.694C>T	ENSMUSP00000051631.1:p.Leu232Phe	H-2-Kb	8	10	2	IFVNVIHL	ILVNVIHL	SMM	322.656	947.851	2.938	174	0.224	375.758	885.748	2.357	1466.77	381.91	789.2	396.7	947.8508415	322.6561891	823.6448742	369.6068402	SSC_p20	1.828571429	1.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	174	0	0	NA	9qA5.1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr8	123200246	123200246	CA	C	ENSMUST00000019422.5	1	ENSMUSG00000019278	FS	N/X	270	Dpep1	ENSMUST00000019422.5:c.809del	ENSMUSP00000019422.4:p.Asn270ThrfsTer55	H-2-Kb	8	4	8	VMVNFFST	VMVNFFSN	NetMHCpan	308.8	416	1.347	137	0.482	457.833	367.409	0.802	351.34	385.1	416	308.8	315.3116375	775.7825382	383.4775994	530.5667136	SSC_p20	0.957142857	1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.486	137	0	0	NA	8qE1	chr8-94346062-127324475	6	4	2	0.9	5.307106465	RARE KARYOTYPE	3	1	sgMsh2	cell line
chr9	49507013	49507013	AT	A	ENSMUST00000194252.5	5	ENSMUSG00000039542	FS	M/X	997	Ncam1	ENSMUST00000194252.5:c.2988del	ENSMUSP00000142331.1:p.Met997TrpfsTer58	H-2-Kb	8	31	0	WALLLPPL	NA	SMMPMBEC	330.172	NA	NA	68	0.059	399.334	NA	NA	NA	450.54	NA	459.2	NA	348.1288376	NA	330.1718172	SSC_p20	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.073	68	0	0	NA	9qA5.3	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.430465302	sgMsh2	cell line
chr9	35270018	35270018	A	C	ENSMUST00000034543.4	1	ENSMUSG00000032044	missense	M/L	137	Rpusd4	ENSMUST00000034543.4:c.409A>C	ENSMUSP00000034543.4:p.Met137Leu	H-2-Kb	8	4	8	VLPILAKL	VLPILAKM	NetMHCpan	302.2	531.9	1.76	111	0.153	468.196	1829.314	3.907	1856.69	476.41	531.9	302.2	1930.812048	481.6593553	1801.938647	459.9811133	SSC_p20	1.742857143	1.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.148	111	0	0	NA	9qA4	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.872724174	sgMsh2	cell line
chr9	14464244	14464244	CT	C	ENSMUST00000058796.6	1	ENSMUSG00000053914	FS	K/X	106	Kdm4d	ENSMUST00000058796.6:c.317del	ENSMUSP00000061632.6:p.Lys106SerfsTer62	H-2-Kb	8	63	0	KTYWNRNV	NA	SMM	220.161	NA	NA	139	0.281	287.732	NA	NA	NA	506.68	NA	327.3	NA	220.1608027	NA	248.1646968	SSC_p20	-1.457142857	-1.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.273	139	0	0	NA	9qA2	chr9-4330518-20646946	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr9	45672814	45672814	A	G	ENSMUST00000034592.9	1	ENSMUSG00000032087	missense	S/G	526	Dscaml1	ENSMUST00000034592.9:c.1576A>G	ENSMUSP00000034592.8:p.Ser526Gly	H-2-Kb	8	8	4	TTIGHMNV	TTISHMNV	SMM	358.707	155.862	0.435	67	0.284	484.318	174.694	0.361	100.18	520.16	336.8	899.6	155.8619122	358.7071224	193.5263029	448.476819	SSC_p20	0.4	0.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.275	67	0	0	NA	9qA5.2	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr8	123200246	123200246	CA	C	ENSMUST00000019422.5	1	ENSMUSG00000019278	FS	N/X	270	Dpep1	ENSMUST00000019422.5:c.809del	ENSMUSP00000019422.4:p.Asn270ThrfsTer55	H-2-Kb	9	4	8	VMVNFFSTL	VMVNFFSNF	NetMHCpan	4.4	12	2.727	137	0.482	9.947	16.668	1.676	10.15	4.79	12	4.4	21.33585248	15.10462682	26.86890699	18.58874201	SSC_p20	1.228571429	1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.486	137	0	0	NA	8qE1	chr8-94346062-127324475	6	4	2	0.9	5.307106465	RARE KARYOTYPE	3	1	sgMsh2	cell line
chr9	39819815	39819815	A	G	ENSMUST00000215922.1	3	ENSMUSG00000095774	missense	M/V	59	Olfr970	ENSMUST00000215922.1:c.175A>G	ENSMUSP00000150325.1:p.Met59Val	H-2-Kb	9	10	2	PVYYFLSSL	PMYYFLSSL	SMM	35.165	16.222	0.461	319	0.273	46.13	35.595	0.772	45.21	53.06	42.4	39.2	16.22220929	35.16494966	28.79055255	58.51268133	SSC_p20	0.885714286	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.277	319	0	0	NA	9qA5.1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr9	9180096	9180096	GA	G	ENSMUST00000093893.11	1	ENSMUSG00000050730	FS	S/X	61	Arhgap42	ENSMUST00000093893.11:c.181del	ENSMUSP00000091419.4:p.Ser61ProfsTer27	H-2-Kb	9	5	7	MAVQKFPSL	MAVQKFSQS	NetMHC	53.32	4058.82	76.122	84	0.214	124.504	2384.403	19.151	4058.82	53.32	4485.7	55.7	636.9568317	206.5903351	709.9863514	193.3080768	SSC_p20	0.142857143	0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.224	84	0	0	NA	9qA1	chr9-4330518-20646946	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	44333095	44333095	A	C	ENSMUST00000054708.4	1	ENSMUSG00000032123	missense	Q/H	402	Dpagt1	ENSMUST00000054708.4:c.1206A>C	ENSMUSP00000056282.3:p.Gln402His	H-2-Kb	9	9	5	SIRYHLVRL	SIRYQLVRL	NetMHC	72.21	244.4	3.385	144	0.181	145.776	454.768	3.12	244.4	72.21	546.9	165.9	396.378418	135.865753	513.1566957	155.6861575	SSC_p20	-0.242857143	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	144	0	0	NA	9qA5.2	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	39184623	39184623	T	G	ENSMUST00000071617.5	3	ENSMUSG00000094970	missense	I/M	148	Olfr943	ENSMUST00000071617.5:c.444T>G	ENSMUSP00000071545.5:p.Ile148Met	H-2-Kb	9	3	9	SSQIYTSLM	SSQIYTSLI	NetMHC	79.33	157.47	1.985	351	0.248	233.471	430.395	1.843	157.47	79.33	299.6	169.7	561.1900987	297.2418804	608.4851727	356.6563823	SSC_p20	0.557142857	0.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.255	351	0	0	NA	9qA5.1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	38498985	38498985	C	CT	ENSMUST00000214264.2	5	ENSMUSG00000094810	FS	-/X	105-106	Olfr907	ENSMUST00000214264.2:c.321dup	ENSMUSP00000148894.1:p.Ala108CysfsTer4	H-2-Kb	9	8	7	YFFAFFCNF	YFFAFFAIS	SMM	90.596	167.537	1.849	249	0.233	117.026	772.859	6.604	1240.05	114.86	1395.6	263.4	167.5367167	90.59620379	305.6680173	119.1927939	SSC_p20	1.714285714	2.028571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.24	249	0	0	NA	9qA5.1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	38368241	38368241	C	T	ENSMUST00000052085.1	NA	ENSMUSG00000049864	missense	L/F	232	Olfr250	ENSMUST00000052085.1:c.694C>T	ENSMUSP00000051631.1:p.Leu232Phe	H-2-Kb	9	9	3	LIFVNVIHL	LILVNVIHL	NetMHC	168.82	706.84	4.187	174	0.224	284.247	934.768	3.289	706.84	168.82	1075.9	238.8	924.9324152	329.6932077	944.6044779	340.6042008	SSC_p20	1.828571429	2.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	174	0	0	NA	9qA5.1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	44333095	44333095	A	C	ENSMUST00000054708.4	1	ENSMUSG00000032123	missense	Q/H	402	Dpagt1	ENSMUST00000054708.4:c.1206A>C	ENSMUSP00000056282.3:p.Gln402His	H-2-Kb	9	6	8	ATFSIRYHL	ATFSIRYQL	NetMHCpan	80.7	165.9	2.056	144	0.181	339.306	452.341	1.333	331.74	204.25	165.9	80.7	572.9411296	474.3621186	581.0988286	615.5310989	SSC_p20	0.185714286	0.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	144	0	0	NA	9qA5.2	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	39258136	39258136	A	C	ENSMUST00000076903.2	NA	ENSMUSG00000063380	missense	C/G	182	Olfr945	ENSMUST00000076903.2:c.544T>G	ENSMUSP00000076169.2:p.Cys182Gly	H-2-Kb	9	5	7	VINHYFGDI	VINHYFCDI	NetMHC	248.12	402.57	1.622	264	0.409	313.678	336.411	1.072	402.57	248.12	262.7	378.9	382.9217191	379.4110717	289.9011913	248.4562923	SSC_p20	-0.657142857	0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.408	264	0	0	NA	9qA5.1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr9	39258136	39258136	A	C	ENSMUST00000076903.2	NA	ENSMUSG00000063380	missense	C/G	182	Olfr945	ENSMUST00000076903.2:c.544T>G	ENSMUSP00000076169.2:p.Cys182Gly	H-2-Kb	9	6	6	INHYFGDIL	INHYFCDIL	NetMHCpan	249.4	114.5	0.459	264	0.409	350.747	161.261	0.46	107.57	280.66	114.5	249.4	208.0223508	420.8332054	225.553723	456.2995075	SSC_p20	0.385714286	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.408	264	0	0	NA	9qA5.1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr9	19808619	19808619	G	T	ENSMUST00000217280.1	5	ENSMUSG00000095448	missense	Q/H	100	Olfr859	ENSMUST00000217280.1:c.300G>T	ENSMUSP00000151076.1:p.Gln100His	H-2-Kb	9	10	2	THVSFFILF	TQVSFFILF	SMM	175.029	226.001	1.291	445	0.231	275.16	317.494	1.154	322.92	314.68	446.4	362.2	226.0008122	175.0289954	312.0685478	235.640535	SSC_p20	2.871428571	2.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.229	445	0	0	NA	9qA3	chr9-4330518-20646946	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr8	123200246	123200246	CA	C	ENSMUST00000019422.5	1	ENSMUSG00000019278	FS	N/X	270	Dpep1	ENSMUST00000019422.5:c.809del	ENSMUSP00000019422.4:p.Asn270ThrfsTer55	H-2-Kb	9	45	0	IMMVLLCFL	NA	SMM	165.619	NA	NA	137	0.482	264.355	NA	NA	NA	319.66	NA	450.4	NA	165.6189397	NA	209.0499173	SSC_p20	3.257142857	3.257142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.486	137	0	0	NA	8qE1	chr8-94346062-127324475	6	4	2	0.9	5.307106465	RARE KARYOTYPE	3	1	sgMsh2	cell line
chr9	28404310	28404310	T	C	ENSMUST00000073822.5	5	ENSMUSG00000062257	missense	L/P	22	Opcml	ENSMUST00000073822.5:c.65T>C	ENSMUSP00000073493.5:p.Leu22Pro	H-2-Kb	9	5	7	VVSLRLPFL	VVSLRLLFL	SMM	263.093	316.308	1.202	111	0.144	327.081	471.6	1.442	650.36	370.86	613.4	372.5	316.3078717	263.0934282	329.7995054	283.3022345	SSC_p20	1.042857143	1.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.149	111	0	0	NA	9qA4	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.878620959	sgMsh2	cell line
chr9	38026663	38026663	T	C	ENSMUST00000072974.1	NA	ENSMUSG00000094461	missense	F/L	286	Olfr883	ENSMUST00000072974.1:c.856T>C	ENSMUSP00000072741.1:p.Phe286Leu	H-2-Kb	9	3	9	IVGPMLNPL	IVGPMLNPF	SMM	270.464	456.152	1.687	236	0.203	367.857	772.853	2.101	983.04	410.44	1958.5	619.2	456.1524376	270.4643321	562.6651281	325.2744865	SSC_p20	0.342857143	1.271428571	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.209	236	0	0	NA	9qA4	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	50541135	50541135	CT	C	ENSMUST00000119103.1	5	ENSMUSG00000032066	FS	K/X	211	Bco2	ENSMUST00000119103.1:c.632del	ENSMUSP00000112727.1:p.Lys211ArgfsTer23	H-2-Kb	9	22	0	RCYVPLPPL	NA	NetMHCpan	362.2	NA	NA	64	0.25	400.867	NA	NA	NA	415.27	NA	362.2	NA	386.4648502	NA	431.7675507	SSC_p20	0.814285714	0.814285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.271	64	0	0	NA	9qA5.3	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr9	46196067	46196067	G	T	ENSMUST00000126865.7	1	ENSMUSG00000034135	missense	R/S	467	Sik3	ENSMUST00000126865.7:c.1401G>T	ENSMUSP00000121032.1:p.Arg467Ser	H-2-Kb	9	8	4	SMRSHTVGV	SMRRHTVGV	SMM	275.493	411.254	1.493	73	0.178	474.924	490.105	1.032	455.1	499.81	1075.3	1239.2	411.2538721	275.4926395	525.1096507	450.0388435	SSC_p20	-0.171428571	-0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.197	73	0	0	NA	9qA5.2	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	38855422	38855422	A	G	ENSMUST00000104874.2	NA	ENSMUSG00000047667	missense	Y/C	120	Olfr26	ENSMUST00000104874.2:c.359A>G	ENSMUSP00000100467.2:p.Tyr120Cys	H-2-Kb	9	9	3	MACDRYVAI	MAYDRYVAI	SMMPMBEC	240.021	33.439	0.139	331	0.018	487.773	30.259	0.062	27.08	527.72	14.4	804.5	39.27443988	447.8267173	33.43874735	240.0214196	SSC_p20	0.528571429	0.528571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.019	331	0	0	NA	9qA5.1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.112038914	sgMsh2	cell line
chr9	14464244	14464244	CT	C	ENSMUST00000058796.6	1	ENSMUSG00000053914	FS	K/X	106	Kdm4d	ENSMUST00000058796.6:c.317del	ENSMUSP00000061632.6:p.Lys106SerfsTer62	H-2-Kb	9	32	0	CMSHRFMVL	NA	SMM	252.412	NA	NA	139	0.281	323.535	NA	NA	NA	564.66	NA	358.5	NA	252.4120012	NA	288.5692163	SSC_p20	0.6	0.6	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.273	139	0	0	NA	9qA2	chr9-4330518-20646946	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr8	121888323	121888323	A	G	ENSMUST00000045557.9	1	ENSMUSG00000040010	missense	W/R	262	Slc7a5	ENSMUST00000045557.9:c.784T>C	ENSMUSP00000041557.8:p.Trp262Arg	H-2-Kb	9	6	6	FAYGGRNYL	FAYGGWNYL	SMM	342.855	144.248	0.421	218	0.193	404.088	149.076	0.369	211.24	824.21	122.4	408	144.2480663	342.8546153	153.9040328	400.1750427	SSC_p20	-1.085714286	-0.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.206	218	0	0	NA	8qE1	chr8-94346062-127324475	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	39719449	39719449	C	A	ENSMUST00000215164.2	5	ENSMUSG00000095839	missense	S/Y	74	Olfr965	ENSMUST00000215164.2:c.221C>A	ENSMUSP00000150401.1:p.Ser74Tyr	H-2-Kb	9	6	6	IDLCYYTVI	IDLCYSTVI	SMMPMBEC	261.969	1312.955	5.012	456	0.27	445.578	2632.181	5.907	5805.22	2025.9	3444.2	437.1	1820.161819	454.0566075	1312.955479	261.9690589	SSC_p20	1.671428571	1.671428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.271	456	0	0	NA	9qA5.1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	sgMsh2	cell line
chrX	21486522	21486522	A	AT	ENSMUST00000089188.8	1	ENSMUSG00000068122	FS	I/IX	132	Agtr2	ENSMUST00000089188.8:c.402dup	ENSMUSP00000086592.2:p.Ile135TyrfsTer8	H-2-Kb	8	9	6	ASIFFYYL	ASIFFITC	NetMHC	7.16	2524.56	352.592	148	0.412	9.18	748.528	81.541	2524.56	7.16	989.2	7.3	438.2682402	11.05961477	507.8553127	11.93273511	SSC_p20	1.5	1.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.401	148	0	0	NA	XqA2	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr9	105026705	105026705	A	T	ENSMUST00000057742.14	1	ENSMUSG00000032564	missense	Q/H	435	Cpne4	ENSMUST00000057742.14:c.1305A>T	ENSMUSP00000049663.8:p.Gln435His	H-2-Kb	8	9	3	ASHYFILL	ASQYFILL	NetMHCpan	15.1	35.7	2.364	90	0.222	41.412	58.188	1.405	30.75	20.2	35.7	15.1	80.67519058	70.42713151	91.77829809	62.62388407	SSC_p20	1.371428571	1.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.229	90	0	0	NA	9qF1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	123640590	123640590	A	T	ENSMUST00000040960.12	1	ENSMUSG00000036814	missense	C/S	481	Slc6a20a	ENSMUST00000040960.12:c.1441T>A	ENSMUSP00000047690.6:p.Cys481Ser	H-2-Kb	8	10	2	VSYVYGLK	VCYVYGLK	SMMPMBEC	22.067	186.526	8.453	97	0.237	63.142	2311.159	36.603	5104.27	96.31	4266.9	318.2	355.4184757	29.97367541	186.5262676	22.06683258	SSC_p20	0.042857143	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.235	97	0	0	NA	9qF4	chr9-110945494-124127055	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	119221284	119221284	T	C	ENSMUST00000173185.1	1	ENSMUSG00000092212	missense	T/A	287	Slc22a13b	ENSMUST00000173185.1:c.859A>G	ENSMUSP00000134667.1:p.Thr287Ala	H-2-Kb	8	10	2	IAPLVMLL	ITPLVMLL	NetMHC	136.12	137.31	1.009	109	0.128	291.28	245.511	0.843	137.31	136.12	256.2	219.7	234.8226582	362.8607551	312.4208431	494.0148455	SSC_p20	2.528571429	2.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.136	109	0	0	NA	9qF3	chr9-110945494-124127055	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.801962755	sgMsh2	cell line
chrM	3537	3537	G	A	ENSMUST00000082392.1	NA	ENSMUSG00000064341	missense	A/T	263	mt-Nd1	ENSMUST00000082392.1:c.787G>A	ENSMUSP00000080991.2:p.Ala263Thr	H-2-Kb	8	5	7	TNFMMETL	TNFMMEAL	NetMHCpan	63.2	55.4	0.877	2512	0.02	170.876	102.343	0.599	82.86	150	55.4	63.2	129.3421274	215.149331	121.8260042	191.7520431	SSC_p20	0.385714286	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.019	2512	0	0	NA	.	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr9	55859035	55859035	A	G	ENSMUST00000037408.8	5	ENSMUSG00000034007	missense	S/P	486	Scaper	ENSMUST00000037408.8:c.1456T>C	ENSMUSP00000043411.8:p.Ser486Pro	H-2-Kb	8	5	7	LSFCGVPL	LSFCGVSL	NetMHCpan	105.4	186	1.765	115	0.13	131.862	273.904	2.077	509.51	216.74	186	105.4	320.4350395	155.1457917	227.3735801	108.5775406	SSC_p20	1.5	1.5	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.144	115	0	0	NA	9qB	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.849137034	sgMsh2	cell line
chr9	95765786	95765786	C	T	ENSMUST00000093800.8	1	ENSMUSG00000049493	missense	V/M	427	Pls1	ENSMUST00000093800.8:c.1279G>A	ENSMUSP00000091317.2:p.Val427Met	H-2-Kb	8	11	1	MIFQLYEM	VIFQLYEM	NetMHCpan	142.7	41.7	0.292	128	0.234	262.168	100.165	0.382	88.71	358.49	41.7	142.7	111.6194813	238.0893668	135.1263357	286.246378	SSC_p20	0.671428571	0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.239	128	0	0	NA	9qE3.3	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	54628565	54628565	A	G	ENSMUST00000138315.1	3	ENSMUSG00000032281	missense	V/A	51	Acsbg1	ENSMUST00000138315.1:c.152T>C	ENSMUSP00000118133.1:p.Val51Ala	H-2-Kb	8	5	7	CAWNLSAL	CAWNLSVL	NetMHCpan	288.1	607.2	2.108	141	0.206	380.756	906.753	2.381	1552.12	410.97	607.2	288.1	825.5435717	350.5419514	987.9614526	439.2785529	SSC_p20	0.857142857	0.857142857	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.22	141	0	0	NA	9qA5.3	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	108961780	108961780	C	T	ENSMUST00000112070.7	5	ENSMUSG00000025650	missense	A/V	1048	Col7a1	ENSMUST00000112070.7:c.3143C>T	ENSMUSP00000107701.1:p.Ala1048Val	H-2-Kb	8	4	8	ISVTQTPV	ISVTQTPA	SMM	316.767	1891.211	5.97	140	0.186	400.714	3615.556	9.023	5339.9	422.34	5712.8	706.6	1891.211064	316.7670499	1822.804114	379.0879676	SSC_p20	0.157142857	0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.195	140	0	0	NA	9qF2	chr9-106195029-110944556	6	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	1	sgMsh2	cell line
chr9	119221284	119221284	T	C	ENSMUST00000173185.1	1	ENSMUSG00000092212	missense	T/A	287	Slc22a13b	ENSMUST00000173185.1:c.859A>G	ENSMUSP00000134667.1:p.Thr287Ala	H-2-Kb	8	6	6	VGGIIAPL	VGGIITPL	SMMPMBEC	279.731	816.094	2.917	109	0.128	415.454	1070.841	2.578	1907.7	467.88	942.9	411.4	1198.781411	419.5077612	816.0936526	279.7306149	SSC_p20	1.742857143	1.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.136	109	0	0	NA	9qF3	chr9-110945494-124127055	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.801962755	sgMsh2	cell line
chr9	78064712	78064712	T	G	ENSMUST00000024104.8	1	ENSMUSG00000023333	missense	Y/D	312	Gcm1	ENSMUST00000024104.8:c.934T>G	ENSMUSP00000024104.7:p.Tyr312Asp	H-2-Kb	8	10	2	IDYPAYPL	IYYPAYPL	SMM	119.053	83.703	0.703	183	0.202	224.62	75.401	0.336	51.67	871.81	67.1	287.9	83.70280268	119.0529058	113.6946424	161.3392375	SSC_p20	-0.528571429	-0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.204	183	0	0	NA	9qE1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	123640590	123640590	A	T	ENSMUST00000040960.12	1	ENSMUSG00000036814	missense	C/S	481	Slc6a20a	ENSMUST00000040960.12:c.1441T>A	ENSMUSP00000047690.6:p.Cys481Ser	H-2-Kb	9	8	4	IAVSYVYGL	IAVCYVYGL	NetMHCpan	23.6	41.6	1.763	97	0.237	105.237	151.867	1.443	54.13	25.5	41.6	23.6	254.7475407	184.9737069	249.6031145	237.82089	SSC_p20	1.2	1.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.235	97	0	0	NA	9qF4	chr9-110945494-124127055	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chrM	3537	3537	G	A	ENSMUST00000082392.1	NA	ENSMUSG00000064341	missense	A/T	263	mt-Nd1	ENSMUST00000082392.1:c.787G>A	ENSMUSP00000080991.2:p.Ala263Thr	H-2-Kb	9	5	7	TNFMMETLL	TNFMMEALL	NetMHCpan	49.7	31.3	0.63	2512	0.02	74.894	48.24	0.644	29.97	62.67	31.3	49.7	65.17934622	87.11842194	67.0270337	91.25359861	SSC_p20	1.428571429	1.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.019	2512	0	0	NA	.	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr9	96297705	96297705	G	GA	ENSMUST00000165768.3	1	ENSMUSG00000032411	FS	E/EX	140	Tfdp2	ENSMUST00000165768.3:c.426dup	ENSMUSP00000128260.2:p.Glu143ArgfsTer47	H-2-Kb	9	20	0	PAYQFCSGM	NA	NetMHC	85.15	NA	NA	140	0.193	106.96	NA	NA	NA	85.15	NA	165.8	NA	88.53398242	NA	125.3862749	SSC_p20	0.171428571	0.171428571	FALSE	FALSE	FALSE	1	FALSE	0	Strelka2;Vardict	2	0.1929	140	0	0	NA	9qE3.3	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chrX	21486522	21486522	A	AT	ENSMUST00000089188.8	1	ENSMUSG00000068122	FS	I/IX	132	Agtr2	ENSMUST00000089188.8:c.402dup	ENSMUSP00000086592.2:p.Ile135TyrfsTer8	H-2-Kb	9	8	7	FASIFFYYL	FASIFFITC	NetMHC	96.54	5565.47	57.649	148	0.412	154.349	3955.146	25.625	5565.47	96.54	6610.1	127.1	2344.822647	181.5975563	1710.999962	221.9473684	SSC_p20	1.5	1.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.401	148	0	0	NA	XqA2	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr9	65215569	65215569	C	G	ENSMUST00000213396.1	1	ENSMUSG00000032392	missense	D/E	37	Parp16	ENSMUST00000213396.1:c.111C>G	ENSMUSP00000150318.1:p.Asp37Glu	H-2-Kb	9	6	6	QSYKRESVL	QSYKRDSVL	SMM	60.969	92.068	1.51	30	0.2	121.077	202.484	1.672	305.14	167.98	597.5	323.2	92.06827368	60.9691303	99.82745515	74.17370966	SSC_p20	-0.857142857	-0.857142857	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.241	30	0	0	NA	9qC	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	95765786	95765786	C	T	ENSMUST00000093800.8	1	ENSMUSG00000049493	missense	V/M	427	Pls1	ENSMUST00000093800.8:c.1279G>A	ENSMUSP00000091317.2:p.Val427Met	H-2-Kb	9	11	1	MIFQLYEMI	VIFQLYEMI	NetMHCpan	143.7	56.8	0.395	128	0.234	228.937	83.765	0.366	73.07	213.39	56.8	143.7	112.7482994	289.1412139	94.46044779	244.4837509	SSC_p20	0.671428571	0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.239	128	0	0	NA	9qE3.3	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chrX	21486522	21486522	A	AT	ENSMUST00000089188.8	1	ENSMUSG00000068122	FS	I/IX	132	Agtr2	ENSMUST00000089188.8:c.402dup	ENSMUSP00000086592.2:p.Ile135TyrfsTer8	H-2-Kb	9	10	5	SIFFYYLHE	NA	SMMPMBEC	47.561	NA	NA	148	0.412	169.033	NA	NA	NA	288.05	NA	539.9	NA	50.01612019	NA	47.56089297	SSC_p20	0.014285714	1.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.401	148	0	0	NA	XqA2	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr9	105026705	105026705	A	T	ENSMUST00000057742.14	1	ENSMUSG00000032564	missense	Q/H	435	Cpne4	ENSMUST00000057742.14:c.1305A>T	ENSMUSP00000049663.8:p.Gln435His	H-2-Kb	9	9	3	ASHYFILLI	ASQYFILLI	NetMHCpan	194.8	511.6	2.626	90	0.222	354.936	657.147	1.851	562.48	339.95	511.6	194.8	751.8132925	369.9218633	849.6694433	416.1500968	SSC_p20	2.128571429	2.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.229	90	0	0	NA	9qF1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	119958066	119958066	A	G	ENSMUST00000035100.5	1	ENSMUSG00000032514	missense	E/G	713	Ttc21a	ENSMUST00000035100.5:c.2138A>G	ENSMUSP00000035100.5:p.Glu713Gly	H-2-Kb	9	4	8	LYIGCYVGL	LYIGCYVEL	SMMPMBEC	243.36	269.929	1.109	170	0.212	418.183	661.365	1.582	1022.91	541.17	983.8	753	338.9299909	295.1956816	269.9292823	243.3604501	SSC_p20	1.842857143	1.842857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.232	170	0	0	NA	9qF4	chr9-110945494-124127055	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	105026705	105026705	A	T	ENSMUST00000057742.14	1	ENSMUSG00000032564	missense	Q/H	435	Cpne4	ENSMUST00000057742.14:c.1305A>T	ENSMUSP00000049663.8:p.Gln435His	H-2-Kb	9	10	2	SHYFILLIL	SQYFILLIL	SMM	295.196	381.162	1.291	90	0.222	321.169	437.853	1.363	778.38	713.59	417.3	296.2	381.1623536	295.1956816	458.4056903	346.1385739	SSC_p20	3.128571429	3.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.229	90	0	0	NA	9qF1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	sgMsh2	cell line
chrX	76266837	76266837	GA	G	ENSMUST00000096389.4	1	ENSMUSG00000071738	FS	K/X	4	Cldn34b3	ENSMUST00000096389.4:c.14del	ENSMUSP00000094120.4:p.Lys5SerfsTer11	H-2-Db	9	5	1	SAIAKWEVL	NA	NetMHCpan	51.6	NA	NA	122	0.295	187.454	NA	NA	NA	113.95	NA	51.6	NA	327.8083411	NA	260.9576303	SSC_p20	0.857142857	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.304	122	0	0	NA	XqA7.3	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chrX	69844125	69844125	G	T	ENSMUST00000033532.6	1	ENSMUSG00000031189	missense	K/N	923	Aff2	ENSMUST00000033532.6:c.2769G>T	ENSMUSP00000033532.6:p.Lys923Asn	H-2-Db	9	7	5	CATFNGISI	CATFKGISI	NetMHC	268.39	18926.62	70.519	32	0.656	327.554	13462.653	41.101	18926.62	268.39	14549.6	327.3	10656.63277	327.8083411	12375.70647	368.6124504	SSC_p20	0.914285714	1	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.636	32	0	0	NA	XqA7.2	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chrX	90892634	90892634	GA	G	ENSMUST00000172155.1	NA	ENSMUSG00000091497	FS	K/X	165	Gm44	ENSMUST00000172155.1:c.495del	ENSMUSP00000129722.1:p.Lys165AsnfsTer20	H-2-Db	9	7	5	ISKLNFPTM	ISKLKLPNN	SMMPMBEC	155.801	141765.319	909.913	42	0.69	242.025	91004.939	376.014	45670.91	460.09	43170.9	325.7	136338.9673	158.3507045	141765.3192	155.8009136	SSC_p20	-0.171428571	0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.675	42	0	0	NA	XqC1	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chrX	59999509	59999509	A	G	ENSMUST00000033477.4	1	ENSMUSG00000031138	missense	T/A	16	F9	ENSMUST00000033477.4:c.46A>G	ENSMUSP00000033477.4:p.Thr16Ala	H-2-Db	9	10	2	IAIFLLGYL	ITIFLLGYL	SMMPMBEC	347.993	1988.703	5.715	92	0.337	414.012	2182.409	5.271	2017.24	466.93	8105.4	1958.5	2347.577833	361.0937737	1988.703326	347.9925929	SSC_p20	2.428571429	2.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.356	92	0	0	NA	XqA6	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chrX	139080483	139080483	GA	G	ENSMUST00000033626.14	1	ENSMUSG00000031271	FS	F/X	361	Serpina7	ENSMUST00000033626.14:c.1083del	ENSMUSP00000033626.8:p.His362ThrfsTer43	H-2-Kb	8	7	6	LSYAFTRL	LSYAFHKA	NetMHC	2.2	115.41	52.459	34	0.588	2.348	118.06	50.288	115.41	2.2	56.2	2.5	159.1255801	2.447597495	120.7090967	2.247708563	SSC_p20	0.157142857	0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.573	34	0	0	NA	XqF1	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chrX	59999509	59999509	A	G	ENSMUST00000033477.4	1	ENSMUSG00000031138	missense	T/A	16	F9	ENSMUST00000033477.4:c.46A>G	ENSMUSP00000033477.4:p.Thr16Ala	H-2-Kb	8	11	1	AIFLLGYL	TIFLLGYL	NetMHC	30.51	27.38	0.897	92	0.337	46.432	36.632	0.789	27.38	30.51	38.3	57.6	37.47485835	47.28680813	35.78821189	45.57639811	SSC_p20	2.428571429	2.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.356	92	0	0	NA	XqA6	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chrX	59250947	59250947	A	AG	ENSMUST00000124402.1	2	ENSMUSG00000031137	FS	P/PX	23	Fgf13	ENSMUST00000124402.1:c.68dup	ENSMUSP00000114905.1:p.Gly24TrpfsTer28	H-2-Kb	8	19	0	VTTRFHPI	NA	NetMHCpan	45.2	NA	NA	38	0.474	60.112	NA	NA	NA	51.4	NA	45.2	NA	68.82401428	NA	71.07878574	SSC_p20	-0.485714286	-0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.461	38	0	0	NA	XqA6	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chrX	152061792	152061792	CA	C	ENSMUST00000045312.5	1	ENSMUSG00000041133	FS	N/X	1229	Smc1a	ENSMUST00000045312.5:c.3686del	ENSMUSP00000044645.5:p.Asn1229ThrfsTer47	H-2-Kb	8	19	0	SIFLSGSL	NA	NetMHC	59.77	NA	NA	113	0.381	63.291	NA	NA	NA	59.77	NA	62.5	NA	64.08258172	NA	76.51384027	SSC_p20	1.842857143	1.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.37	113	0	0	NA	XqF3	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chrX	139080483	139080483	GA	G	ENSMUST00000033626.14	1	ENSMUSG00000031271	FS	F/X	361	Serpina7	ENSMUST00000033626.14:c.1083del	ENSMUSP00000033626.8:p.His362ThrfsTer43	H-2-Kb	8	38	0	KYLLFTLL	NA	NetMHCpan	97.5	NA	NA	34	0.588	173.503	NA	NA	NA	158.32	NA	97.5	NA	192.6371303	NA	188.68614	SSC_p20	2.285714286	2.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.573	34	0	0	NA	XqF1	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chrX	143804468	143804468	AT	A	ENSMUST00000087316.5	1	ENSMUSG00000067276	FS	K/X	544	Capn6	ENSMUST00000087316.5:c.1632del	ENSMUSP00000084573.5:p.Lys544AsnfsTer65	H-2-Kb	8	56	0	VISSWGRL	NA	SMMPMBEC	159.492	NA	NA	64	0.094	190.163	NA	NA	NA	193.8	NA	434.2	NA	186.5262676	NA	159.4924025	SSC_p20	0.128571429	0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.111	64	0	0	NA	XqF2	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chrX	139080483	139080483	GA	G	ENSMUST00000033626.14	1	ENSMUSG00000031271	FS	F/X	361	Serpina7	ENSMUST00000033626.14:c.1083del	ENSMUSP00000033626.8:p.His362ThrfsTer43	H-2-Kb	8	35	0	ISRKYLLF	NA	NetMHCpan	149.6	NA	NA	34	0.588	268.382	NA	NA	NA	209.62	NA	149.6	NA	378.2160895	NA	327.1447838	SSC_p20	-0.014285714	0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.573	34	0	0	NA	XqF1	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chrX	72257609	72257609	T	G	ENSMUST00000064780.3	1	ENSMUSG00000031340	missense	K/T	865	Gabre	ENSMUST00000064780.3:c.2594A>C	ENSMUSP00000066543.3:p.Lys865Thr	H-2-Kb	8	8	4	VLRTYFCM	VLRKYFCM	NetMHCpan	313.9	380	1.211	47	0.553	454.151	592.614	1.305	877.47	794.76	380	313.9	621.9278428	475.0507412	563.3003227	433.2514252	SSC_p20	0.642857143	0.971428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.562	47	0	0	NA	XqA7.3	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chrX	143804468	143804468	AT	A	ENSMUST00000087316.5	1	ENSMUSG00000067276	FS	K/X	544	Capn6	ENSMUST00000087316.5:c.1632del	ENSMUSP00000084573.5:p.Lys544AsnfsTer65	H-2-Kb	9	55	0	SVISSWGRL	NA	NetMHC	91.87	NA	NA	64	0.094	198.416	NA	NA	NA	91.87	NA	145	NA	251.8314697	NA	288.5692163	SSC_p20	0.128571429	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.111	64	0	0	NA	XqF2	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chrX	53737717	53737717	CT	C	ENSMUST00000069209.1	1	ENSMUSG00000055555	FS	F/X	191	4930502E18Rik	ENSMUST00000069209.1:c.575del	ENSMUSP00000064619.1:p.Phe192SerfsTer39	H-2-Kb	9	9	4	TIFSPWILL	NA	SMM	107.922	NA	NA	61	0.426	133.325	NA	NA	NA	110.65	NA	156	NA	107.9220037	NA	162.6484766	SSC_p20	1.657142857	1.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.433	61	0	0	NA	XqA5	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chrX	59999509	59999509	A	G	ENSMUST00000033477.4	1	ENSMUSG00000031138	missense	T/A	16	F9	ENSMUST00000033477.4:c.46A>G	ENSMUSP00000033477.4:p.Thr16Ala	H-2-Kb	9	10	2	IAIFLLGYL	ITIFLLGYL	NetMHCpan	96.1	111.5	1.16	92	0.337	171.58	212.675	1.24	185.88	157.7	111.5	96.1	295.876178	214.8374555	239.4693856	185.4598909	SSC_p20	2.428571429	2.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.356	92	0	0	NA	XqA6	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chrX	143804468	143804468	AT	A	ENSMUST00000087316.5	1	ENSMUSG00000067276	FS	K/X	544	Capn6	ENSMUST00000087316.5:c.1632del	ENSMUSP00000084573.5:p.Lys544AsnfsTer65	H-2-Kb	9	58	0	SSWGRLLSM	NA	NetMHCpan	107.5	NA	NA	64	0.094	135.611	NA	NA	NA	164.49	NA	107.5	NA	138.7107117	NA	132.5104107	SSC_p20	0.414285714	0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.111	64	0	0	NA	XqF2	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chrX	86747655	86747655	G	A	ENSMUST00000113966.7	5	ENSMUSG00000052372	missense	P/S	560	Il1rapl1	ENSMUST00000113966.7:c.1678C>T	ENSMUSP00000109599.1:p.Pro560Ser	H-2-Kb	9	10	2	MSFKRIEPI	MPFKRIEPI	NetMHCpan	58.3	2180.6	37.403	76	0.487	177.366	2262.711	12.757	4631.31	173.91	2180.6	58.3	2344.822647	233.4049166	1946.480243	180.8214719	SSC_p20	-0.242857143	-0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.487	76	0	0	NA	XqC1	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chrX	139080483	139080483	GA	G	ENSMUST00000033626.14	1	ENSMUSG00000031271	FS	F/X	361	Serpina7	ENSMUST00000033626.14:c.1083del	ENSMUSP00000033626.8:p.His362ThrfsTer43	H-2-Kb	9	37	0	RKYLLFTLL	NA	NetMHC	203.66	NA	NA	34	0.588	211.441	NA	NA	NA	203.66	NA	213.9	NA	208.9825384	NA	249.6031145	SSC_p20	2.285714286	2.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.573	34	0	0	NA	XqF1	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chrX	139080483	139080483	GA	G	ENSMUST00000033626.14	1	ENSMUSG00000031271	FS	F/X	361	Serpina7	ENSMUST00000033626.14:c.1083del	ENSMUSP00000033626.8:p.His362ThrfsTer43	H-2-Kb	9	7	6	LSYAFTRLC	LSYAFHKAV	NetMHCpan	150.2	10.8	0.072	34	0.588	376.586	69.998	0.186	9.47	210.86	10.8	150.2	134.001605	587.6381732	129.1962773	542.312981	SSC_p20	0.628571429	0.628571429	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.573	34	0	0	NA	XqF1	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chrX	90892634	90892634	GA	G	ENSMUST00000172155.1	NA	ENSMUSG00000091497	FS	K/X	165	Gm44	ENSMUST00000172155.1:c.495del	ENSMUSP00000129722.1:p.Lys165AsnfsTer20	H-2-Kb	9	7	5	ISKLNFPTM	ISKLKLPNN	NetMHCpan	113.7	16922.2	148.832	42	0.69	241.21	9647.087	39.995	17062.13	213.73	16922.2	113.7	2371.974414	308.3968972	1216.886295	268.6890699	SSC_p20	-0.171428571	0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.675	42	0	0	NA	XqC1	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chrX	56362784	56362784	GA	G	ENSMUST00000101560.3	1	ENSMUSG00000073176	FS	E/X	239	Zfp449	ENSMUST00000101560.3:c.723del	ENSMUSP00000099096.3:p.Lys241AsnfsTer10	H-2-Kb	9	12	2	KNWKLCTHL	NA	NetMHCpan	216.4	NA	NA	54	0.5	360.47	NA	NA	NA	217.15	NA	216.4	NA	593.0755223	NA	503.7905305	SSC_p20	0.2	0.2	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.472	54	0	0	NA	XqA6	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chrX	139080483	139080483	GA	G	ENSMUST00000033626.14	1	ENSMUSG00000031271	FS	F/X	361	Serpina7	ENSMUST00000033626.14:c.1083del	ENSMUSP00000033626.8:p.His362ThrfsTer43	H-2-Kb	9	33	0	LWISRKYLL	NA	SMM	142.269	NA	NA	34	0.588	273.194	NA	NA	NA	271.44	NA	746.2	NA	142.2689086	NA	274.9476424	SSC_p20	0.228571429	0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.573	34	0	0	NA	XqF1	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chrX	152061792	152061792	CA	C	ENSMUST00000045312.5	1	ENSMUSG00000041133	FS	N/X	1229	Smc1a	ENSMUST00000045312.5:c.3686del	ENSMUSP00000044645.5:p.Asn1229ThrfsTer47	H-2-Kb	9	31	0	VHLLSWISL	NA	NetMHC	278.75	NA	NA	113	0.381	319.29	NA	NA	NA	278.75	NA	330.4	NA	317.7678825	NA	320.8115533	SSC_p20	1.914285714	1.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.37	113	0	0	NA	XqF3	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chrX	143804468	143804468	AT	A	ENSMUST00000087316.5	1	ENSMUSG00000067276	FS	K/X	544	Capn6	ENSMUST00000087316.5:c.1632del	ENSMUSP00000084573.5:p.Lys544AsnfsTer65	H-2-Kb	9	59	0	SWGRLLSML	NA	SMM	338.93	NA	NA	64	0.094	442.246	NA	NA	NA	360.59	NA	1059.6	NA	338.9299909	NA	523.901932	SSC_p20	1.085714286	1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.111	64	0	0	NA	XqF2	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chrX	101673545	101673545	GA	G	ENSMUST00000044475.4	1	ENSMUSG00000034160	FS	K/X	757	Ogt	ENSMUST00000044475.4:c.2271del	ENSMUSP00000045409.4:p.Lys757AsnfsTer23	H-2-Kb	9	22	0	VTQLLICPL	NA	NetMHCpan	324.4	NA	NA	84	0.536	478.008	NA	NA	NA	401.25	NA	324.4	NA	554.7662088	NA	602.9065471	SSC_p20	1.9	2.085714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.536	84	0	0	NA	XqD	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chrX	76266837	76266837	GA	G	ENSMUST00000096389.4	1	ENSMUSG00000071738	FS	K/X	4	Cldn34b3	ENSMUST00000096389.4:c.14del	ENSMUSP00000094120.4:p.Lys5SerfsTer11	H-2-Kb	9	5	1	SAIAKWEVL	NA	SMMPMBEC	336.705	NA	NA	122	0.295	441.405	NA	NA	NA	440.11	NA	549.4	NA	442.7004873	NA	336.7053368	SSC_p20	0.857142857	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.304	122	0	0	NA	XqA7.3	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chrX	59999509	59999509	A	G	ENSMUST00000033477.4	1	ENSMUSG00000031138	missense	T/A	16	F9	ENSMUST00000033477.4:c.46A>G	ENSMUSP00000033477.4:p.Thr16Ala	H-2-Kb	9	11	1	AIFLLGYLL	TIFLLGYLL	SMM	413.152	350.841	0.849	92	0.337	482.006	383.499	0.796	363.12	455.56	490.4	781.3	350.8407252	413.1521337	403.8778168	508.4520469	SSC_p20	2.328571429	2.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.356	92	0	0	NA	XqA6	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chrX	139080483	139080483	GA	G	ENSMUST00000033626.14	1	ENSMUSG00000031271	FS	F/X	361	Serpina7	ENSMUST00000033626.14:c.1083del	ENSMUSP00000033626.8:p.His362ThrfsTer43	H-2-Kb	9	11	2	FTRLCYTLV	NA	SMM	467.854	NA	NA	34	0.588	499.34	NA	NA	NA	469.93	NA	1405.5	NA	467.8536263	NA	528.7495369	SSC_p20	1.114285714	1.114285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.573	34	0	0	NA	XqF1	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chrX	152061792	152061792	CA	C	ENSMUST00000045312.5	1	ENSMUSG00000041133	FS	N/X	1229	Smc1a	ENSMUST00000045312.5:c.3686del	ENSMUSP00000044645.5:p.Asn1229ThrfsTer47	H-2-Kb	9	34	0	LSWISLPPI	NA	NetMHCpan	337.8	NA	NA	113	0.381	474.202	NA	NA	NA	476.07	NA	337.8	NA	588.9928191	NA	472.3348608	SSC_p20	1.128571429	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.37	113	0	0	NA	XqF3	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chrX	64271265	64271265	T	C	ENSMUST00000069926.13	1	ENSMUSG00000046699	missense	T/A	599	Slitrk4	ENSMUST00000069926.13:c.1795A>G	ENSMUSP00000064443.7:p.Thr599Ala	H-2-Kb	9	8	4	PAIAFTTPL	PAITFTTPL	SMM	267.985	239.392	0.893	90	0.444	348.429	300.576	0.863	409.34	540.29	319.8	361.7	239.3922023	267.9847002	281.3519957	335.1583163	SSC_p20	1.414285714	1.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.457	90	0	0	NA	XqA7.1	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr10	5228100	5228100	T	G	ENSMUST00000215295.1	5	ENSMUSG00000096054	missense	K/N	4791	Syne1	ENSMUST00000215295.1:c.14373A>C	ENSMUSP00000150262.1:p.Lys4791Asn	H-2-Db	9	9	3	QANVNEETL	QAKVNEETL	NetMHC	39.37	362.31	9.203	71	0.085	44.8	257.197	5.741	362.31	39.37	353.1	58.3	161.2946639	43.51309752	149.8200715	46.08610447	09-2_par	-0.957142857	-0.957142857	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.097	71	0	0	NA	10qA1	chr10-3120209-129526639	4	2	2	0.94	4.253366344	NA	1	0.438911208	sgMsh2	cell line
chr1	184919705	184919705	A	G	ENSMUST00000027929.9	1	ENSMUSG00000026620	missense	F/S	201	Mark1	ENSMUST00000027929.9:c.602T>C	ENSMUSP00000027929.4:p.Phe201Ser	H-2-Db	9	11	1	SGFSNEFTV	FGFSNEFTV	NetMHC	50.58	23.76	0.47	113	0.062	116.656	82.644	0.708	23.76	50.58	35.1	60.9	144.0854078	173.6280949	130.1877136	172.4129966	09-2_par	0.185714286	0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.071	113	0	0	NA	1qH5	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.321264905	sgMsh2	cell line
chr1	165539831	165539831	A	G	ENSMUST00000027852.14	1	ENSMUSG00000026567	missense	T/A	557	Adcy10	ENSMUST00000027852.14:c.1669A>G	ENSMUSP00000027852.8:p.Thr557Ala	H-2-Db	9	4	8	SFHQNFYAI	SFHQNFYTI	SMM	105.104	62.176	0.592	111	0.189	167.108	96.911	0.58	73.99	141.21	379.5	647.3	62.17560216	105.1041828	119.8312253	193.0056399	09-2_par	-0.342857143	-0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.189	111	0	0	NA	1qH2.3	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.855198127	sgMsh2	cell line
chr1	40743926	40743926	T	C	ENSMUST00000027231.12	1	ENSMUSG00000026062	missense	L/P	450	Slc9a2	ENSMUST00000027231.12:c.1349T>C	ENSMUSP00000027231.7:p.Leu450Pro	H-2-Db	9	5	7	FALVFLPPA	FALVFLLPA	SMM	249.816	267.683	1.072	131	0.031	294.694	383.99	1.303	462.79	321.12	2000.1	635.7	267.6825125	249.8158561	305.1897897	268.2686971	09-2_par	1.885714286	2.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.04	131	0	0	NA	1qB	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.180994312	sgMsh2	cell line
chr10	84725752	84725752	G	T	ENSMUST00000077175.6	1	ENSMUSG00000034453	missense	R/M	1125	Polr3b	ENSMUST00000077175.6:c.3374G>T	ENSMUSP00000076418.5:p.Arg1125Met	H-2-Db	9	5	9	LQSMNIIPM	LQSMNIIPR	NetMHCpan	78	26437.4	338.941	45	0.067	328.433	24147.941	73.525	34986.4	344.46	26437.4	78	21858.48208	315.2245257	11602.99219	341.6410123	09-2_par	0.985714286	0.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.085	45	0	0	NA	10qC1	chr10-3120209-129526639	4	2	2	0.94	4.253366344	NA	1	0.384612914	sgMsh2	cell line
chr1	85579187	85579187	CT	C	ENSMUST00000093508.6	1	ENSMUSG00000070034	FS	K/X	385	Sp110	ENSMUST00000093508.6:c.1154del	ENSMUSP00000091226.6:p.Lys385SerfsTer13	H-2-Db	9	11	1	SAFRMRQEI	NA	SMMPMBEC	212.114	NA	NA	119	0.109	246.936	NA	NA	NA	356.88	NA	263.4	NA	230.4729708	NA	212.1143253	09-2_par	-0.971428571	-0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.121	119	0	0	NA	1qC5	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.547507795	sgMsh2	cell line
chr1	92588592	92588592	A	C	ENSMUST00000190505.2	3	ENSMUSG00000046300	missense	K/N	87	Olfr1412	ENSMUST00000190505.2:c.261A>C	ENSMUSP00000150943.1:p.Lys87Asn	H-2-Db	9	11	1	NAMANFYSS	KAMANFYSS	SMM	238.572	187.767	0.787	219	0.078	448.615	248.476	0.554	418.17	714	263.3	574.7	187.7673167	238.5722904	233.6522675	322.5299134	09-2_par	0.014285714	0.385714286	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.086	219	0	0	NA	1qD	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.389137772	sgMsh2	cell line
chr10	79293627	79293627	A	C	ENSMUST00000020547.9	1	ENSMUSG00000055515	missense	K/T	784	Vmn2r81	ENSMUST00000020547.9:c.2351A>C	ENSMUSP00000020547.8:p.Lys784Thr	H-2-Kb	8	11	1	TSLAFSML	KSLAFSML	NetMHC	4.56	5.78	1.268	428	0.054	9.63	14.375	1.493	5.78	4.56	11.7	7.3	17.05061311	11.96024291	19.48677632	13.08398387	09-2_par	1.785714286	1.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.054	428	0	0	NA	10qC1	chr10-3120209-129526639	4	2	2	0.94	4.253366344	NA	1	0.244342322	sgMsh2	cell line
chr10	50754122	50754122	G	T	ENSMUST00000035606.9	5	ENSMUSG00000038774	missense	S/I	1769	Ascc3	ENSMUST00000035606.9:c.5306G>T	ENSMUSP00000036726.8:p.Ser1769Ile	H-2-Kb	8	8	4	MNPIYYSL	MNPSYYSL	NetMHC	10.83	12.27	1.133	121	0.174	32.613	36.465	1.118	12.27	10.83	28.9	21.7	44.02911945	43.52512229	62.62388407	64.23030732	09-2_par	-0.028571429	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.173	121	0	0	NA	10qB3	chr10-3120209-129526639	4	2	2	0.94	4.253366344	NA	1	0.782800402	sgMsh2	cell line
chr1	127412243	127412243	G	T	ENSMUST00000038361.10	1	ENSMUSG00000036155	missense	V/L	454	Mgat5	ENSMUST00000038361.10:c.1360G>T	ENSMUSP00000038359.4:p.Val454Leu	H-2-Kb	8	4	8	QSLVYGKL	QSLVYGKV	NetMHC	15.26	75.8	4.967	72	0.167	52.362	246.565	4.709	75.8	15.26	265.7	39.6	232.6697911	65.12383991	260.4593785	71.90183929	09-2_par	0.771428571	0.771428571	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.159	72	0	0	NA	1qE3	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.719452392	sgMsh2	cell line
chr10	51491491	51491491	C	T	ENSMUST00000078778.4	1	ENSMUSG00000112148	missense	T/I	43	Lilrb4a	ENSMUST00000078778.4:c.128C>T	ENSMUSP00000077833.3:p.Thr43Ile	H-2-Kb	8	6	6	VIAAYISV	VIAAYTSV	SMM	125.817	113.957	0.906	143	0.049	185.713	125.278	0.675	89.01	186.85	136.6	184.9	113.9567356	125.8171954	162.4575876	186.5262676	09-2_par	2.1	2.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.057	143	0	0	NA	10qB3	chr10-3120209-129526639	4	2	2	0.94	4.253366344	NA	1	0.257916895	sgMsh2	cell line
chr1	26682136	26682136	A	G	ENSMUST00000097801.3	1	ENSMUSG00000073722	missense	I/T	1321	4931408C20Rik	ENSMUST00000097801.3:c.3962T>C	ENSMUSP00000095410.3:p.Ile1321Thr	H-2-Kb	8	5	7	FLFRYRTI	FLFRYRII	NetMHCpan	70	178.8	2.554	138	0.058	167.816	408.466	2.434	826.6	232.42	178.8	70	426.324214	186.0972691	390.6069803	149.534017	09-2_par	0.014285714	0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.059	138	0	0	NA	1qA5	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.266966611	sgMsh2	cell line
chr1	86085228	86085228	A	G	ENSMUST00000027432.8	1	ENSMUSG00000026229	missense	N/S	373	Psmd1	ENSMUST00000027432.8:c.1118A>G	ENSMUSP00000027432.8:p.Asn373Ser	H-2-Kb	8	11	1	SSFMHCGT	NSFMHCGT	NetMHCpan	223	2154.7	9.662	166	0.054	257.26	2211.603	8.597	5618.35	276.43	2154.7	223	2268.506354	357.0590129	1351.263357	238.0893668	09-2_par	0.3	0.3	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.059	166	0	0	NA	1qC5	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.266966611	sgMsh2	cell line
chr1	154633618	154633618	A	G	ENSMUST00000187541.6	1	ENSMUSG00000004110	missense	L/P	297	Cacna1e	ENSMUST00000187541.6:c.890T>C	ENSMUSP00000140937.1:p.Leu297Pro	H-2-Kb	8	8	4	DNIPFAVL	DNILFAVL	SMM	178.131	93.485	0.525	43	0.093	412.973	165.678	0.401	220.76	608.34	374.2	572	93.48458404	178.1312026	110.5961477	253.9451951	09-2_par	1.714285714	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.116	43	0	0	NA	1qG3	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.524883506	sgMsh2	cell line
chr10	79293627	79293627	A	C	ENSMUST00000020547.9	1	ENSMUSG00000055515	missense	K/T	784	Vmn2r81	ENSMUST00000020547.9:c.2351A>C	ENSMUSP00000020547.8:p.Lys784Thr	H-2-Kb	9	11	1	TSLAFSMLV	KSLAFSMLV	NetMHC	44.85	75.54	1.684	428	0.054	202.03	278.679	1.379	75.54	44.85	128.7	121.5	428.6570788	282.5595563	681.1613539	385.7003207	09-2_par	2.5	2.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.054	428	0	0	NA	10qC1	chr10-3120209-129526639	4	2	2	0.94	4.253366344	NA	1	0.244342322	sgMsh2	cell line
chr10	79293627	79293627	A	C	ENSMUST00000020547.9	1	ENSMUSG00000055515	missense	K/T	784	Vmn2r81	ENSMUST00000020547.9:c.2351A>C	ENSMUSP00000020547.8:p.Lys784Thr	H-2-Kb	9	10	2	STSLAFSML	SKSLAFSML	NetMHC	140.51	1696.69	12.075	428	0.054	410.071	2022.339	4.932	1696.69	140.51	2512.3	225.7	1778.729877	594.4427026	2265.948317	750.3260074	09-2_par	1.785714286	1.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.054	428	0	0	NA	10qC1	chr10-3120209-129526639	4	2	2	0.94	4.253366344	NA	1	0.244342322	sgMsh2	cell line
chr10	50754122	50754122	G	T	ENSMUST00000035606.9	5	ENSMUSG00000038774	missense	S/I	1769	Ascc3	ENSMUST00000035606.9:c.5306G>T	ENSMUSP00000036726.8:p.Ser1769Ile	H-2-Kb	9	7	5	IMNPIYYSL	IMNPSYYSL	NetMHCpan	106.8	122.5	1.147	121	0.174	213.697	155.456	0.727	120.49	198.25	122.5	106.8	188.4126249	229.1447967	231.3396105	261.9690589	09-2_par	-0.028571429	0.457142857	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.173	121	0	0	NA	10qB3	chr10-3120209-129526639	4	2	2	0.94	4.253366344	NA	1	0.782800402	sgMsh2	cell line
chr10	59192281	59192281	CA	C	ENSMUST00000165971.2	1	ENSMUSG00000019917	FS	C/X	73	44449	ENSMUST00000165971.2:c.217del	ENSMUSP00000129023.1:p.Cys73ValfsTer20	H-2-Kb	9	8	4	SHFVHVLDL	NA	NetMHCpan	100.4	NA	NA	98	0.071	252.737	NA	NA	NA	201.21	NA	100.4	NA	343.6449768	NA	304.2636004	09-2_par	1.728571429	1.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0714	98	0	0	NA	10qB4	chr10-3120209-129526639	4	2	2	0.94	4.253366344	NA	1	0.323074848	sgMsh2	cell line
chr1	26682136	26682136	A	G	ENSMUST00000097801.3	1	ENSMUSG00000073722	missense	I/T	1321	4931408C20Rik	ENSMUST00000097801.3:c.3962T>C	ENSMUSP00000095410.3:p.Ile1321Thr	H-2-Kb	9	3	9	YNFLFRYRT	YNFLFRYRI	NetMHCpan	130.6	13	0.1	138	0.058	261.794	85.42	0.326	40.79	220.82	13	130.6	130.0498932	302.7680195	171.8897579	373.4650797	09-2_par	-0.228571429	-0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.059	138	0	0	NA	1qA5	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.266966611	sgMsh2	cell line
chr1	85579187	85579187	CT	C	ENSMUST00000093508.6	1	ENSMUSG00000070034	FS	K/X	385	Sp110	ENSMUST00000093508.6:c.1154del	ENSMUSP00000091226.6:p.Lys385SerfsTer13	H-2-Kb	9	11	1	SAFRMRQEI	NA	NetMHC	222.54	NA	NA	119	0.109	380.963	NA	NA	NA	222.54	NA	325.3	NA	436.6264089	NA	527.5334467	09-2_par	-0.971428571	-0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.121	119	0	0	NA	1qC5	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.547507795	sgMsh2	cell line
chr10	51491491	51491491	C	T	ENSMUST00000078778.4	1	ENSMUSG00000112148	missense	T/I	43	Lilrb4a	ENSMUST00000078778.4:c.128C>T	ENSMUSP00000077833.3:p.Thr43Ile	H-2-Kb	9	5	7	SVIAAYISV	SVIAAYTSV	NetMHC	288.69	142.45	0.493	143	0.049	428.023	348.075	0.813	142.45	288.69	170	300	526.1505152	556.045077	632.7760017	695.4245209	09-2_par	2.1	2.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.057	143	0	0	NA	10qB3	chr10-3120209-129526639	4	2	2	0.94	4.253366344	NA	1	0.257916895	sgMsh2	cell line
chr10	26327738	26327738	T	C	ENSMUST00000040219.12	5	ENSMUSG00000039089	missense	D/G	398	L3mbtl3	ENSMUST00000040219.12:c.1193A>G	ENSMUSP00000037619.6:p.Asp398Gly	H-2-Kb	9	10	2	VGNRFLVHF	VDNRFLVHF	NetMHCpan	257.9	3608.2	13.991	136	0.029	359.233	1868.195	5.201	2970.6	318.29	3608.2	257.9	765.7905451	409.3643322	695.4245209	400.1750427	09-2_par	0.342857143	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.038	136	0	0	NA	10qA4	chr10-3120209-129526639	4	2	2	0.94	4.253366344	NA	1	0.171944597	sgMsh2	cell line
chr1	86085228	86085228	A	G	ENSMUST00000027432.8	1	ENSMUSG00000026229	missense	N/S	373	Psmd1	ENSMUST00000027432.8:c.1118A>G	ENSMUSP00000027432.8:p.Asn373Ser	H-2-Kb	9	11	1	SSFMHCGTT	NSFMHCGTT	NetMHCpan	161	1171.9	7.279	166	0.054	333.502	1531.255	4.591	4082.34	365.53	1171.9	161	1854.001153	429.6452354	1208.509309	301.4740949	09-2_par	0.314285714	0.314285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.059	166	0	0	NA	1qC5	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.266966611	sgMsh2	cell line
chr1	127412243	127412243	G	T	ENSMUST00000038361.10	1	ENSMUSG00000036155	missense	V/L	454	Mgat5	ENSMUST00000038361.10:c.1360G>T	ENSMUSP00000038359.4:p.Val454Leu	H-2-Kb	9	6	6	LVYGKLDSF	LVYGKVDSF	SMM	278.042	542.138	1.95	72	0.167	372.202	726.824	1.953	911.51	463.7	1434.9	1078.9	542.1381881	278.0417415	480.0096849	280.704904	09-2_par	-0.471428571	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.159	72	0	0	NA	1qE3	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.719452392	sgMsh2	cell line
chr10	23897365	23897365	T	C	ENSMUST00000041416.7	1	ENSMUSG00000037440	missense	Y/H	97	Vnn1	ENSMUST00000041416.7:c.289T>C	ENSMUSP00000040599.7:p.Tyr97His	H-2-Kb	9	7	5	TIYPHLEEI	TIYPYLEEI	NetMHCpan	162.8	59.8	0.367	34	0.382	280.695	187.481	0.668	155.05	490.72	59.8	162.8	228.6177783	285.1740477	219.9125427	276.216743	09-2_par	-0.685714286	-0.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.4	34	0	0	NA	10qA4	chr10-3120209-129526639	4	2	2	0.94	4.253366344	NA	2	1	sgMsh2	cell line
chr11	36008549	36008549	T	C	ENSMUST00000102801.7	5	ENSMUSG00000049336	missense	Y/C	2594	Tenm2	ENSMUST00000102801.7:c.7781A>G	ENSMUSP00000099865.1:p.Tyr2594Cys	H-2-Db	9	5	7	SVLNNACYL	SVLNNAYYL	NetMHCpan	29.4	22.1	0.752	115	0.078	58.079	41.36	0.712	16.41	35.69	22.1	29.4	60.62056782	80.46740575	79.53714539	98.30373071	09-2_par	0.514285714	0.642857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.087	115	0	0	NA	11qA4	chr11-3132249-69579350	4	2	2	0.94	4.253366344	NA	1	0.39366263	sgMsh2	cell line
chr11	103497686	103497686	CA	C	ENSMUST00000153273.2	5	ENSMUSG00000078632	FS	F/X	2304	Lrrc37a	ENSMUST00000153273.2:c.6912del	ENSMUSP00000121903.2:p.Phe2304LeufsTer27	H-2-Db	9	25	0	ASHLNLWIL	NA	NetMHCpan	47.6	NA	NA	214	0.047	73.433	NA	NA	NA	70.02	NA	47.6	NA	76.84577591	NA	95.84511879	09-2_par	1.185714286	1.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.053	214	0	0	NA	11qE1	chr11-83350706-121956668	4	2	2	0.94	4.253366344	NA	1	0.239817464	sgMsh2	cell line
chr11	95969851	95969851	T	G	ENSMUST00000013559.2	1	ENSMUSG00000013415	missense	S/R	359	Igf2bp1	ENSMUST00000013559.2:c.1075A>C	ENSMUSP00000013559.2:p.Ser359Arg	H-2-Db	9	8	4	AAMRLQSHL	AAMSLQSHL	SMM	336.217	330.842	0.984	80	0.087	466.447	489.283	1.049	583.59	561.66	681.7	531.5	330.8415143	336.2172565	394.9753567	401.39319	09-2_par	-0.357142857	0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.094	80	0	0	NA	11qD	chr11-83350706-121956668	4	2	2	0.94	4.253366344	NA	1	0.425336634	sgMsh2	cell line
chr11	43835686	43835686	T	C	ENSMUST00000067258.8	1	ENSMUSG00000050541	missense	S/G	135	Adra1b	ENSMUST00000067258.8:c.403A>G	ENSMUSP00000070200.2:p.Ser135Gly	H-2-Db	9	7	5	ASILGLCAI	ASILSLCAI	SMMPMBEC	393.161	265.809	0.676	62	0.065	445.671	273.24	0.613	280.67	577.5	248.5	460.2	294.86281	431.1416704	265.8091949	393.1606098	09-2_par	2.928571429	2.928571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.08	62	0	0	NA	11qB1.1	chr11-3132249-69579350	4	2	2	0.94	4.253366344	NA	1	0.361988625	sgMsh2	cell line
chr11	116607343	116607343	T	C	ENSMUST00000103028.7	1	ENSMUSG00000020806	missense	N/S	10	Rhbdf2	ENSMUST00000103028.7:c.29A>G	ENSMUSP00000099317.1:p.Asn10Ser	H-2-Db	9	3	8	SADKNGSSL	SADKNGSNL	NetMHCpan	264.2	514.2	1.946	43	0.093	491.14	788.8	1.606	1790.39	859.51	514.2	264.2	838.7257951	517.1541332	738.8733457	465.1253395	09-2_par	-1.3	-1.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.116	43	0	0	NA	11qE2	chr11-83350706-121956668	4	2	2	0.94	4.253366344	NA	1	0.524883506	sgMsh2	cell line
chr11	74206569	74206569	A	G	ENSMUST00000205664.2	3	ENSMUSG00000070377	missense	S/P	216	Olfr43	ENSMUST00000205664.2:c.646T>C	ENSMUSP00000145822.2:p.Ser216Pro	H-2-Kb	8	8	4	IIIPYVRV	IIISYVRV	NetMHC	19.76	12.73	0.644	221	0.045	41.401	25.1	0.606	12.73	19.76	29.1	41.9	26.22647967	40.90157201	23.97397234	44.74453509	09-2_par	1.428571429	1.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.049	221	0	0	NA	11qB5	chr11-69590981-82929860	4	4	0	0.94	4.253366344	NA	1	0.221718033	sgMsh2	cell line
chr11	73940563	73940563	GT	G	ENSMUST00000214210.1	5	ENSMUSG00000069816	FS	F/X	106	Olfr23	ENSMUST00000214210.1:c.321del	ENSMUSP00000150593.1:p.Phe107LeufsTer30	H-2-Kb	8	5	8	QMYFFLFL	QMYFFLFF	SMM	18.482	300.428	16.255	292	0.041	20.74	280.064	13.504	248.7	21.08	259.7	20.4	300.4277187	18.48161845	370.458872	29.49442949	09-2_par	2.371428571	2.371428571	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.041	292	0	0	NA	11qB4	chr11-69590981-82929860	4	4	0	0.94	4.253366344	NA	1	0.18551917	sgMsh2	cell line
chr12	65226339	65226339	T	C	ENSMUST00000046331.4	1	ENSMUSG00000035560	missense	L/P	192	Wdr20rt	ENSMUST00000046331.4:c.575T>C	ENSMUSP00000036682.4:p.Leu192Pro	H-2-Kb	8	5	7	TAPHYQPL	TAPHYQLL	NetMHC	22.18	72.01	3.247	281	0.018	70.891	170.898	2.411	72.01	22.18	104.8	52.3	236.9954455	89.4828896	280.3754606	101.7981768	09-2_par	-0.8	-0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.022	281	0	0	NA	12qC1	chr12-3501831-114367242	6	4	2	0.94	4.253366344	NA	1	0.099546872	sgMsh2	cell line
chr11	73940563	73940563	GT	G	ENSMUST00000214210.1	5	ENSMUSG00000069816	FS	F/X	106	Olfr23	ENSMUST00000214210.1:c.321del	ENSMUSP00000150593.1:p.Phe107LeufsTer30	H-2-Kb	8	13	0	VMLRVYSL	NA	NetMHCpan	44.4	NA	NA	292	0.041	81.384	NA	NA	NA	54.69	NA	44.4	NA	108.0786721	NA	133.5795574	09-2_par	1.014285714	1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.041	292	0	0	NA	11qB4	chr11-69590981-82929860	4	4	0	0.94	4.253366344	NA	1	0.18551917	sgMsh2	cell line
chr11	73940563	73940563	GT	G	ENSMUST00000214210.1	5	ENSMUSG00000069816	FS	F/X	106	Olfr23	ENSMUST00000214210.1:c.321del	ENSMUSP00000150593.1:p.Phe107LeufsTer30	H-2-Kb	8	27	0	VMWPSASL	NA	NetMHCpan	50	NA	NA	292	0.041	88.47	NA	NA	NA	59.25	NA	50	NA	117.6901185	NA	131.4437679	09-2_par	0.485714286	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.041	292	0	0	NA	11qB4	chr11-69590981-82929860	4	4	0	0.94	4.253366344	NA	1	0.18551917	sgMsh2	cell line
chr12	108361203	108361203	T	C	ENSMUST00000021684.5	1	ENSMUSG00000021259	missense	F/L	425	Cyp46a1	ENSMUST00000021684.5:c.1273T>C	ENSMUSP00000021684.4:p.Phe425Leu	H-2-Kb	8	11	1	LTYFPFSL	FTYFPFSL	NetMHCpan	22.8	31.8	1.395	106	0.132	102.142	85.132	0.833	67.05	60.82	31.8	22.8	103.2143305	143.4630303	134.1961326	157.666708	09-2_par	0.714285714	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.14	106	0	0	NA	12qF1	chr12-3501831-114367242	6	4	2	0.94	4.253366344	NA	1	0.633480094	sgMsh2	cell line
chr11	103497686	103497686	CA	C	ENSMUST00000153273.2	5	ENSMUSG00000078632	FS	F/X	2304	Lrrc37a	ENSMUST00000153273.2:c.6912del	ENSMUSP00000121903.2:p.Phe2304LeufsTer27	H-2-Kb	8	4	8	SVILASPL	SVILASPF	NetMHC	68.78	1142.01	16.604	214	0.047	138.547	1671.809	12.067	1142.01	68.78	664.2	109.7	2721.071791	167.3940435	2201.608027	175.2830817	09-2_par	2.242857143	2.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.053	214	0	0	NA	11qE1	chr11-83350706-121956668	4	2	2	0.94	4.253366344	NA	1	0.239817464	sgMsh2	cell line
chr11	34688463	34688463	A	T	ENSMUST00000093193.11	1	ENSMUSG00000020143	missense	L/M	708	Dock2	ENSMUST00000093193.11:c.2122T>A	ENSMUSP00000090884.5:p.Leu708Met	H-2-Kb	8	9	3	ATMAYKKL	ATLAYKKL	NetMHCpan	62.7	80.7	1.287	113	0.15	117.441	94.582	0.805	84.03	96.29	80.7	62.7	118.7790917	204.0515979	105.1332282	138.5925865	09-2_par	-0.328571429	-0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.16	113	0	0	NA	11qA4	chr11-3132249-69579350	4	2	2	0.94	4.253366344	NA	1	0.72397725	sgMsh2	cell line
chr11	73940563	73940563	GT	G	ENSMUST00000214210.1	5	ENSMUSG00000069816	FS	F/X	106	Olfr23	ENSMUST00000214210.1:c.321del	ENSMUSP00000150593.1:p.Phe107LeufsTer30	H-2-Kb	8	14	0	MLRVYSLL	NA	NetMHCpan	133.4	NA	NA	292	0.041	146.469	NA	NA	NA	149.15	NA	133.4	NA	147.1431334	NA	145.794117	09-2_par	1.285714286	1.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.041	292	0	0	NA	11qB4	chr11-69590981-82929860	4	4	0	0.94	4.253366344	NA	1	0.18551917	sgMsh2	cell line
chr12	13390999	13390999	AC	A	ENSMUST00000042953.9	5	ENSMUSG00000020576	FS	T/X	1110	Nbas	ENSMUST00000042953.9:c.3329del	ENSMUSP00000036082.8:p.Thr1110SerfsTer31	H-2-Kb	8	30	0	VAWKTSTL	NA	NetMHCpan	102.8	NA	NA	115	0.078	200.5	NA	NA	NA	164.55	NA	102.8	NA	289.5609548	NA	236.4503711	09-2_par	-0.2	-0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.082	115	0	0	NA	12qA1.1	chr12-3501831-114367242	6	4	2	0.94	4.253366344	NA	1	0.371038341	sgMsh2	cell line
chr11	72058021	72058021	G	A	ENSMUST00000075258.12	1	ENSMUSG00000040543	missense	R/W	769	Pitpnm3	ENSMUST00000075258.12:c.2305C>T	ENSMUSP00000074737.6:p.Arg769Trp	H-2-Kb	8	9	3	VVWHWQDL	VVRHWQDL	NetMHCpan	164	1200.7	7.321	61	0.279	222.002	907.754	4.089	1202.31	270.69	1200.7	164	614.8086937	260.4593785	592.570463	183.5439188	09-2_par	-0.571428571	-0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.275	61	0	0	NA	11qB4	chr11-69590981-82929860	4	4	0	0.94	4.253366344	NA	1	1	sgMsh2	cell line
chr12	79261656	79261656	C	T	ENSMUST00000021547.7	1	ENSMUSG00000066440	missense	D/N	1705	Zfyve26	ENSMUST00000021547.7:c.5113G>A	ENSMUSP00000021547.6:p.Asp1705Asn	H-2-Kb	8	6	6	IGFTLNEV	IGFTLDEV	NetMHCpan	303.9	1187.3	3.907	128	0.133	375.252	970.102	2.585	1333.11	383.96	1187.3	303.9	696.209588	367.908651	752.9046857	382.5956254	09-2_par	0.385714286	0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.128	128	0	0	NA	12qC3	chr12-3501831-114367242	6	4	2	0.94	4.253366344	NA	1	0.5791818	sgMsh2	cell line
chr11	57528173	57528173	A	T	ENSMUST00000020830.13	1	ENSMUSG00000020522	missense	D/V	53	Mfap3	ENSMUST00000020830.13:c.158A>T	ENSMUSP00000020830.7:p.Asp53Val	H-2-Kb	8	4	8	SAGSYSGV	SAGSYSGD	NetMHC	397.02	22519.42	56.721	88	0.045	446.118	12796.838	28.685	22519.42	397.02	29869.5	1113.8	3074.255792	459.9811133	2458.895091	432.2549746	09-2_par	0.328571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.055	88	0	0	NA	11qB1.3	chr11-3132249-69579350	4	2	2	0.94	4.253366344	NA	1	0.24886718	sgMsh2	cell line
chr11	73940563	73940563	GT	G	ENSMUST00000214210.1	5	ENSMUSG00000069816	FS	F/X	106	Olfr23	ENSMUST00000214210.1:c.321del	ENSMUSP00000150593.1:p.Phe107LeufsTer30	H-2-Kb	8	7	6	YFFLFLVM	YFFLFFGD	SMM	96.547	199.407	2.065	292	0.041	325.178	2182.348	6.711	4165.29	538.48	8208	1132.8	199.4068165	96.54727043	187.8192059	111.8767908	09-2_par	3.157142857	3.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.041	292	0	0	NA	11qB4	chr11-69590981-82929860	4	4	0	0.94	4.253366344	NA	1	0.18551917	sgMsh2	cell line
chr11	49280252	49280252	T	C	ENSMUST00000213323.1	5	ENSMUSG00000059864	missense	Y/H	35	Olfr1393	ENSMUST00000213323.1:c.103T>C	ENSMUSP00000149358.1:p.Tyr35His	H-2-Kb	8	8	4	LIFHSITL	LIFYSITL	NetMHCpan	200.4	132.4	0.661	372	0.019	321.546	331.278	1.03	339.9	578.58	132.4	200.4	322.6561891	320.4350395	340.9887101	322.6561891	09-2_par	1.557142857	1.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.022	372	0	0	NA	11qB1.2	chr11-3132249-69579350	4	2	2	0.94	4.253366344	NA	1	0.099546872	sgMsh2	cell line
chr12	54685943	54685943	TG	T	ENSMUST00000161592.7	1	ENSMUSG00000054302	FS	H/X	127	Eapp	ENSMUST00000161592.7:c.381del	ENSMUSP00000123698.1:p.His127GlnfsTer52	H-2-Kb	8	53	0	SLFQTVML	NA	SMMPMBEC	306.719	NA	NA	170	0.329	372.068	NA	NA	NA	617.01	NA	379.6	NA	364.5356443	NA	306.71852	09-2_par	1.757142857	1.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.344	170	0	0	NA	12qC1	chr12-3501831-114367242	6	4	2	0.94	4.253366344	NA	2	1	sgMsh2	cell line
chr10	130472110	130472110	CA	C	ENSMUST00000164227.3	5	ENSMUSG00000091511	FS	L/X	753	Vmn2r87	ENSMUST00000164227.3:c.2258del	ENSMUSP00000129215.2:p.Leu753TrpfsTer25	H-2-Kb	8	15	0	ASLWLSWL	NA	SMM	312.421	NA	NA	544	0.182	407.641	NA	NA	NA	717.62	NA	457.4	NA	312.4208431	NA	357.8821189	09-2_par	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.186	544	0	0	NA	10qD3	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	sgMsh2	cell line
chr11	117772845	117772845	T	C	ENSMUST00000026659.9	1	ENSMUSG00000025572	missense	I/V	514	Tmc6	ENSMUST00000026659.9:c.1540A>G	ENSMUSP00000026659.3:p.Ile514Val	H-2-Kb	8	10	2	LVLKMAVL	LILKMAVL	SMMPMBEC	395.13	281.67	0.713	83	0.217	457.257	401.56	0.878	565.93	825.08	490.7	423.9	312.4208431	490.6140712	281.6696149	395.1299959	09-2_par	2.257142857	2.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.211	83	0	0	NA	11qE2	chr11-83350706-121956668	4	2	2	0.94	4.253366344	NA	1	0.954744998	sgMsh2	cell line
chr10	130472110	130472110	CA	C	ENSMUST00000164227.3	5	ENSMUSG00000091511	FS	L/X	753	Vmn2r87	ENSMUST00000164227.3:c.2258del	ENSMUSP00000129215.2:p.Leu753TrpfsTer25	H-2-Kb	8	19	0	LSWLGTFL	NA	SMMPMBEC	307.426	NA	NA	544	0.182	420.694	NA	NA	NA	1101.66	NA	318.1	NA	523.2870654	NA	307.4255792	09-2_par	1.085714286	1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.186	544	0	0	NA	10qD3	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	sgMsh2	cell line
chr11	73940563	73940563	GT	G	ENSMUST00000214210.1	5	ENSMUSG00000069816	FS	F/X	106	Olfr23	ENSMUST00000214210.1:c.321del	ENSMUSP00000150593.1:p.Phe107LeufsTer30	H-2-Kb	9	13	0	VMLRVYSLL	NA	NetMHC	16.5	NA	NA	292	0.041	31.039	NA	NA	NA	16.5	NA	19.8	NA	42.27756832	NA	51.6713728	09-2_par	1.285714286	1.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.041	292	0	0	NA	11qB4	chr11-69590981-82929860	4	4	0	0.94	4.253366344	NA	1	0.18551917	sgMsh2	cell line
chr12	65226339	65226339	T	C	ENSMUST00000046331.4	1	ENSMUSG00000035560	missense	L/P	192	Wdr20rt	ENSMUST00000046331.4:c.575T>C	ENSMUSP00000036682.4:p.Leu192Pro	H-2-Kb	9	4	8	TTAPHYQPL	TTAPHYQLL	NetMHC	38.38	95.95	2.5	281	0.018	83.372	121.102	1.453	95.95	38.38	77.5	51.9	146.2547568	114.8444468	160.0479073	114.8814742	09-2_par	-0.8	-0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.022	281	0	0	NA	12qC1	chr12-3501831-114367242	6	4	2	0.94	4.253366344	NA	1	0.099546872	sgMsh2	cell line
chr11	67344985	67344985	A	G	ENSMUST00000108684.7	5	ENSMUSG00000060180	missense	N/S	658	Myh13	ENSMUST00000108684.7:c.1973A>G	ENSMUSP00000104324.1:p.Asn658Ser	H-2-Kb	9	4	8	VSAVFRESL	VSAVFRENL	NetMHC	39.38	15.67	0.398	117	0.034	103.827	79.482	0.766	15.67	39.38	26.8	53.8	132.163034	153.854428	178.7516256	201.0249672	09-2_par	0.542857143	0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.044	117	0	0	NA	11qB3	chr11-3132249-69579350	4	2	2	0.94	4.253366344	NA	1	0.199093744	sgMsh2	cell line
chr11	34688463	34688463	A	T	ENSMUST00000093193.11	1	ENSMUSG00000020143	missense	L/M	708	Dock2	ENSMUST00000093193.11:c.2122T>A	ENSMUSP00000090884.5:p.Leu708Met	H-2-Kb	9	11	1	MAYKKLMTV	LAYKKLMTV	NetMHCpan	53.3	93.4	1.752	113	0.15	111.459	136.253	1.222	92.9	63.29	93.4	53.3	179.1059444	159.628341	191.9773533	191.9773533	09-2_par	0.014285714	0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.16	113	0	0	NA	11qA4	chr11-3132249-69579350	4	2	2	0.94	4.253366344	NA	1	0.72397725	sgMsh2	cell line
chr10	129754686	129754686	T	A	ENSMUST00000213379.1	5	ENSMUSG00000050478	missense	M/L	255	Olfr807	ENSMUST00000213379.1:c.763A>T	ENSMUSP00000149172.1:p.Met255Leu	H-2-Kb	9	3	9	ISYGSCIFL	ISYGSCIFM	NetMHC	67.13	154.95	2.308	154	0.032	106.451	174.575	1.64	154.95	67.13	136.5	69.6	202.3531643	153.854428	194.2003463	143.301257	09-2_par	1.585714286	1.585714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.04	154	0	0	NA	10qD3	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	sgMsh2	cell line
chr11	73940563	73940563	GT	G	ENSMUST00000214210.1	5	ENSMUSG00000069816	FS	F/X	106	Olfr23	ENSMUST00000214210.1:c.321del	ENSMUSP00000150593.1:p.Phe107LeufsTer30	H-2-Kb	9	4	9	AQMYFFLFL	AQMYFFLFF	NetMHCpan	55.2	514.1	9.313	292	0.041	129.191	400.153	3.097	434.5	69.97	514.1	55.2	317.7678825	188.4126249	365.8053055	211.4706012	09-2_par	2.371428571	2.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.041	292	0	0	NA	11qB4	chr11-69590981-82929860	4	4	0	0.94	4.253366344	NA	1	0.18551917	sgMsh2	cell line
chr11	73940563	73940563	GT	G	ENSMUST00000214210.1	5	ENSMUSG00000069816	FS	F/X	106	Olfr23	ENSMUST00000214210.1:c.321del	ENSMUSP00000150593.1:p.Phe107LeufsTer30	H-2-Kb	9	5	8	QMYFFLFLV	QMYFFLFFG	SMM	21.833	161.105	7.379	292	0.041	65.433	1030.016	15.742	1817.79	85.55	4017.5	332.4	161.1053638	21.83282833	242.2423104	45.31583638	09-2_par	2.7	2.7	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.041	292	0	0	NA	11qB4	chr11-69590981-82929860	4	4	0	0.94	4.253366344	NA	1	0.18551917	sgMsh2	cell line
chr11	120134832	120134832	A	G	ENSMUST00000103018.10	1	ENSMUSG00000061306	missense	M/T	226	Slc38a10	ENSMUST00000103018.10:c.677T>C	ENSMUSP00000099307.4:p.Met226Thr	H-2-Kb	9	11	1	TSSIFASSL	MSSIFASSL	NetMHCpan	80.7	63.8	0.791	132	0.03	321.872	325.304	1.011	80.3	100.18	63.8	80.7	570.3087043	561.1900987	641.5787927	543.5631415	09-2_par	1.5	1.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.041	132	0	0	NA	11qE2	chr11-83350706-121956668	4	2	2	0.94	4.253366344	NA	1	0.18551917	sgMsh2	cell line
chr11	34688463	34688463	A	T	ENSMUST00000093193.11	1	ENSMUSG00000020143	missense	L/M	708	Dock2	ENSMUST00000093193.11:c.2122T>A	ENSMUSP00000090884.5:p.Leu708Met	H-2-Kb	9	3	9	IQQHFSATM	IQQHFSATL	NetMHC	108.3	43.99	0.406	113	0.15	432.806	302.966	0.7	43.99	108.3	87	183.1	518.9314595	682.5115418	629.8686601	853.5913393	09-2_par	-0.242857143	-0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.16	113	0	0	NA	11qA4	chr11-3132249-69579350	4	2	2	0.94	4.253366344	NA	1	0.72397725	sgMsh2	cell line
chr11	109677242	109677242	A	T	ENSMUST00000020938.7	1	ENSMUSG00000020614	missense	S/T	341	Fam20a	ENSMUST00000020938.7:c.1021T>A	ENSMUSP00000020938.7:p.Ser341Thr	H-2-Kb	9	11	1	TAFLPSLNL	SAFLPSLNL	NetMHCpan	85.4	55.9	0.655	51	0.059	163.931	116.055	0.708	73.58	119.36	55.9	85.4	158.5294672	208.5018919	301.4740949	327.5291816	09-2_par	1.185714286	1.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.083	51	0	0	NA	11qE1	chr11-83350706-121956668	4	2	2	0.94	4.253366344	NA	1	0.375563198	sgMsh2	cell line
chr11	67211360	67211360	C	A	ENSMUST00000124516.7	1	ENSMUSG00000056328	missense	R/S	826	Myh1	ENSMUST00000124516.7:c.2476C>A	ENSMUSP00000117569.1:p.Arg826Ser	H-2-Kb	9	6	6	IQYNVSAFM	IQYNVRAFM	NetMHC	125.35	144.71	1.154	210	0.1	385.659	420.869	1.091	144.71	125.35	131.9	140.2	830.0609824	631.1171763	697.02764	656.5230826	09-2_par	0.728571429	0.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.105	210	0	0	NA	11qB3	chr11-3132249-69579350	4	2	2	0.94	4.253366344	NA	1	0.47511007	sgMsh2	cell line
chr11	73940563	73940563	GT	G	ENSMUST00000214210.1	5	ENSMUSG00000069816	FS	F/X	106	Olfr23	ENSMUST00000214210.1:c.321del	ENSMUSP00000150593.1:p.Phe107LeufsTer30	H-2-Kb	9	7	6	YFFLFLVML	YFFLFFGDV	SMM	68.408	155.636	2.275	292	0.041	109.291	154.065	1.41	143.05	134.78	541	1042.4	155.6359783	68.40848933	152.4930322	83.80115415	09-2_par	3.3	3.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.041	292	0	0	NA	11qB4	chr11-69590981-82929860	4	4	0	0.94	4.253366344	NA	1	0.18551917	sgMsh2	cell line
chr12	98275498	98275498	A	C	ENSMUST00000075072.5	1	ENSMUSG00000021886	missense	S/R	137	Gpr65	ENSMUST00000075072.5:c.409A>C	ENSMUSP00000074581.4:p.Ser137Arg	H-2-Kb	9	4	8	RRFAFITRL	RRFAFITSL	NetMHC	151.71	273.13	1.8	204	0.02	315.235	449.231	1.425	273.13	151.71	195.7	184.7	625.3310593	445.7691405	673.3641643	470.1646793	09-2_par	1.5	1.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.025	204	0	0	NA	12qE	chr12-3501831-114367242	6	4	2	0.94	4.253366344	NA	1	0.113121445	sgMsh2	cell line
chr11	61546578	61546578	A	C	ENSMUST00000179936.7	1	ENSMUSG00000001036	missense	I/S	56	Epn2	ENSMUST00000179936.7:c.167T>G	ENSMUSP00000136950.1:p.Ile56Ser	H-2-Kb	9	6	6	VAFSESMSM	VAFSEIMSM	NetMHCpan	123.9	82.3	0.664	61	0.197	145.532	154.465	1.061	140.62	155.51	82.3	123.9	168.310031	135.5532704	254.8296748	263.7849417	09-2_par	0.1	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.217	61	0	0	NA	11qB2	chr11-3132249-69579350	4	2	2	0.94	4.253366344	NA	1	0.981894145	sgMsh2	cell line
chr11	95969851	95969851	T	G	ENSMUST00000013559.2	1	ENSMUSG00000013415	missense	S/R	359	Igf2bp1	ENSMUST00000013559.2:c.1075A>C	ENSMUSP00000013559.2:p.Ser359Arg	H-2-Kb	9	8	4	AAMRLQSHL	AAMSLQSHL	NetMHC	159.08	222.94	1.401	80	0.087	409.595	316.523	0.773	222.94	159.08	226.5	212.3	406.5462879	606.8900259	544.816184	635.696763	09-2_par	-0.357142857	0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.094	80	0	0	NA	11qD	chr11-83350706-121956668	4	2	2	0.94	4.253366344	NA	1	0.425336634	sgMsh2	cell line
chr11	78519180	78519180	T	C	ENSMUST00000001127.10	1	ENSMUSG00000001100	missense	W/R	263	Poldip2	ENSMUST00000001127.10:c.787T>C	ENSMUSP00000001127.4:p.Trp263Arg	H-2-Kb	9	9	3	YWRRYCIRL	YWWRYCIRL	NetMHC	209.58	111.24	0.531	108	0.056	256.583	133.321	0.52	111.24	209.58	283.6	415.3	123.3417199	215.8291001	143.301257	297.3377153	09-2_par	-0.571428571	-0.571428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.058	108	0	0	NA	11qB5	chr11-69590981-82929860	4	4	0	0.94	4.253366344	NA	1	0.262441753	sgMsh2	cell line
chr11	87035223	87035223	T	C	ENSMUST00000020804.7	1	ENSMUSG00000061666	missense	T/A	299	Gdpd1	ENSMUST00000020804.7:c.895A>G	ENSMUSP00000020804.7:p.Thr299Ala	H-2-Kb	9	9	3	VMADYPTKL	VMTDYPTKL	NetMHCpan	134	233	1.739	76	0.197	178.725	248.628	1.391	288.51	222.06	233	134	258.8868552	177.8729877	238.3691237	179.5767056	09-2_par	-0.771428571	0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.206	76	0	0	NA	11qC	chr11-83350706-121956668	4	2	2	0.94	4.253366344	NA	1	0.932120709	sgMsh2	cell line
chr11	73940563	73940563	GT	G	ENSMUST00000214210.1	5	ENSMUSG00000069816	FS	F/X	106	Olfr23	ENSMUST00000214210.1:c.321del	ENSMUSP00000150593.1:p.Phe107LeufsTer30	H-2-Kb	9	12	1	LVMLRVYSL	NA	NetMHCpan	203.2	NA	NA	292	0.041	311.416	NA	NA	NA	268.63	NA	203.2	NA	354.9032693	NA	354.201177	09-2_par	1.014285714	1.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.041	292	0	0	NA	11qB4	chr11-69590981-82929860	4	4	0	0.94	4.253366344	NA	1	0.18551917	sgMsh2	cell line
chr11	73940563	73940563	GT	G	ENSMUST00000214210.1	5	ENSMUSG00000069816	FS	F/X	106	Olfr23	ENSMUST00000214210.1:c.321del	ENSMUSP00000150593.1:p.Phe107LeufsTer30	H-2-Kb	9	26	0	TVMWPSASL	NA	NetMHCpan	245.7	NA	NA	292	0.041	416.851	NA	NA	NA	297.77	NA	245.7	NA	535.9323836	NA	714.9077416	09-2_par	0.485714286	0.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.041	292	0	0	NA	11qB4	chr11-69590981-82929860	4	4	0	0.94	4.253366344	NA	1	0.18551917	sgMsh2	cell line
chr10	130472110	130472110	CA	C	ENSMUST00000164227.3	5	ENSMUSG00000091511	FS	L/X	753	Vmn2r87	ENSMUST00000164227.3:c.2258del	ENSMUSP00000129215.2:p.Leu753TrpfsTer25	H-2-Kb	9	9	3	GSWLWGASL	NA	NetMHCpan	270.2	NA	NA	544	0.182	374.862	NA	NA	NA	300.72	NA	270.2	NA	563.7804345	NA	449.0037829	09-2_par	0.914285714	0.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.186	544	0	0	NA	10qD3	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	sgMsh2	cell line
chr11	73940563	73940563	GT	G	ENSMUST00000214210.1	5	ENSMUSG00000069816	FS	F/X	106	Olfr23	ENSMUST00000214210.1:c.321del	ENSMUSP00000150593.1:p.Phe107LeufsTer30	H-2-Kb	9	27	0	VMWPSASLF	NA	NetMHCpan	256.3	NA	NA	292	0.041	308.145	NA	NA	NA	336.32	NA	256.3	NA	279.9690348	NA	420.0006862	09-2_par	0.614285714	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.041	292	0	0	NA	11qB4	chr11-69590981-82929860	4	4	0	0.94	4.253366344	NA	1	0.18551917	sgMsh2	cell line
chr10	130472110	130472110	CA	C	ENSMUST00000164227.3	5	ENSMUSG00000091511	FS	L/X	753	Vmn2r87	ENSMUST00000164227.3:c.2258del	ENSMUSP00000129215.2:p.Leu753TrpfsTer25	H-2-Kb	9	17	0	LWLSWLGTF	NA	SMM	245.533	NA	NA	544	0.182	456.634	NA	NA	NA	499.03	NA	2307.2	NA	245.5330734	NA	414.2380608	09-2_par	1.085714286	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.186	544	0	0	NA	10qD3	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	sgMsh2	cell line
chr11	49280252	49280252	T	C	ENSMUST00000213323.1	5	ENSMUSG00000059864	missense	Y/H	35	Olfr1393	ENSMUST00000213323.1:c.103T>C	ENSMUSP00000149358.1:p.Tyr35His	H-2-Kb	9	7	5	ILIFHSITL	ILIFYSITL	NetMHCpan	196.5	121.2	0.617	372	0.019	499.386	399.016	0.799	497.07	722.24	121.2	196.5	414.1045477	516.547186	383.9281887	482.2253089	09-2_par	1.557142857	2.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.022	372	0	0	NA	11qB1.2	chr11-3132249-69579350	4	2	2	0.94	4.253366344	NA	1	0.099546872	sgMsh2	cell line
chr13	75878849	75878849	T	G	ENSMUST00000022078.11	1	ENSMUSG00000021589	missense	K/N	468	Rhobtb3	ENSMUST00000022078.11:c.1404A>C	ENSMUSP00000022078.5:p.Lys468Asn	H-2-Db	9	7	5	YGVSNETFL	YGVSKETFL	NetMHC	4.07	552.12	135.656	121	0.231	38.329	1708.94	44.587	552.12	4.07	1286.7	11.1	2131.179353	65.55714019	2236.505652	66.61468828	09-2_par	0.328571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.237	121	0	0	NA	13qC1	chr13-3556297-119495179	4	2	2	0.94	4.253366344	NA	1	1	sgMsh2	cell line
chr12	113490367	113490367	T	C	ENSMUST00000063317.3	NA	ENSMUSG00000051804	missense	V/A	268	Adam6b	ENSMUST00000063317.3:c.803T>C	ENSMUSP00000065529.2:p.Val268Ala	H-2-Db	9	10	2	TAYTNSDPF	TVYTNSDPF	NetMHCpan	15.4	81.5	5.292	334	0.024	23.883	201.28	8.428	445.31	19.02	81.5	15.4	219.0887109	34.2468002	183.4720865	28.74550879	09-2_par	-1.228571429	-1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.027	334	0	0	NA	12qF1	chr12-3501831-114367242	6	4	2	0.94	4.253366344	NA	1	0.122171161	sgMsh2	cell line
chr12	117974938	117974938	G	A	ENSMUST00000084806.6	1	ENSMUSG00000018581	missense	A/V	3265	Dnah11	ENSMUST00000084806.6:c.9794C>T	ENSMUSP00000081867.6:p.Ala3265Val	H-2-Kb	8	7	5	KSFAVAGL	KSFAAAGL	NetMHC	11.66	16.83	1.443	130	0.023	23.502	30.038	1.278	16.83	11.66	34.2	31.4	28.6906244	22.52890066	31.38629122	24.47597495	09-2_par	1.885714286	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.031	130	0	0	NA	12qF2	chr12-116047424-119465464	6	4	2	0.94	4.253366344	NA	1	0.140270592	sgMsh2	cell line
chr14	52036009	52036009	A	G	ENSMUST00000214071.1	5	ENSMUSG00000044286	missense	M/T	34	Olfr221	ENSMUST00000214071.1:c.101T>C	ENSMUSP00000150675.1:p.Met34Thr	H-2-Kb	8	10	2	VTYAITVL	VMYAITVL	NetMHCpan	26.2	23.8	0.908	55	0.327	60.149	92.464	1.537	54.39	47.73	23.8	26.2	137.3219621	75.63799359	130.5389154	72.56713881	09-2_par	1.657142857	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.353	55	0	0	NA	14qC2	chr14-51825616-52811780	4	2	2	0.94	4.253366344	NA	2	1	sgMsh2	cell line
chr13	30381285	30381285	A	C	ENSMUST00000066412.7	1	ENSMUSG00000049115	missense	N/T	111	Agtr1a	ENSMUST00000066412.7:c.332A>C	ENSMUSP00000070958.7:p.Asn111Thr	H-2-Kb	8	9	3	SFTLYASV	SFNLYASV	NetMHC	104.33	96.1	0.921	176	0.023	124.873	93.834	0.751	96.1	104.33	165.5	158.9	74.25744462	108.5775406	91.56721386	141.1692151	09-2_par	1.4	1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.03	176	0	0	NA	13qA3.2	chr13-3556297-119495179	4	2	2	0.94	4.253366344	NA	1	0.135745734	sgMsh2	cell line
chr14	65975611	65975611	T	G	ENSMUST00000022616.13	1	ENSMUSG00000022037	missense	F/V	149	Clu	ENSMUST00000022616.13:c.445T>G	ENSMUSP00000022616.6:p.Phe149Val	H-2-Kb	8	8	4	SSPVYFWM	SSPFYFWM	NetMHCpan	60.6	40.4	0.667	147	0.19	147.752	201.93	1.367	223.25	116.55	40.4	60.6	180.6092545	178.9534189	234.2825811	206.8902384	09-2_par	0.614285714	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.198	147	0	0	NA	14qD1	chr14-53336808-123291781	4	2	2	0.94	4.253366344	NA	1	0.895921847	sgMsh2	cell line
chr13	24069691	24069691	C	T	ENSMUST00000072889.11	1	ENSMUSG00000021338	missense	R/H	819	Carmil1	ENSMUST00000072889.11:c.2456G>A	ENSMUSP00000072662.5:p.Arg819His	H-2-Kb	8	7	5	ISIPHTFV	ISIPRTFV	NetMHCpan	135	551.6	4.086	118	0.076	143.522	942.936	6.57	1291.3	147.17	551.6	135	911.4650073	139.8749679	974.4061133	185.6692572	09-2_par	0.742857143	0.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.082	118	0	0	NA	13qA3.1	chr13-3556297-119495179	4	2	2	0.94	4.253366344	NA	1	0.371038341	sgMsh2	cell line
chr13	54221267	54221267	TC	T	ENSMUST00000038101.3	1	ENSMUSG00000034987	FS	S/X	374	Hrh2	ENSMUST00000038101.3:c.1122del	ENSMUSP00000038170.3:p.Phe375SerfsTer53	H-2-Kb	8	26	0	SNHHYISV	NA	NetMHCpan	84.2	NA	NA	43	0.209	192.438	NA	NA	NA	148.97	NA	84.2	NA	235.9065504	NA	249.310173	09-2_par	-0.471428571	-0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.227	43	0	0	NA	13qB1	chr13-3556297-119495179	4	2	2	0.94	4.253366344	NA	1	1	sgMsh2	cell line
chr14	123515710	123515710	C	A	ENSMUST00000000201.6	5	ENSMUSG00000000197	missense	R/I	288	Nalcn	ENSMUST00000000201.6:c.863G>T	ENSMUSP00000000201.5:p.Arg288Ile	H-2-Kb	8	6	6	VFLMYIAI	VFLMYRAI	SMM	80.675	70.265	0.871	55	0.109	117.27	70.672	0.603	62.95	152.93	94.9	239.3	70.26515361	80.67519058	71.07878574	81.60936526	09-2_par	2.571428571	2.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.129	55	0	0	NA	14qE5	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	sgMsh2	cell line
chr15	3325898	3325898	C	A	ENSMUST00000069451.10	1	ENSMUSG00000055737	missense	R/M	301	Ghr	ENSMUST00000069451.10:c.902G>T	ENSMUSP00000069457.4:p.Arg301Met	H-2-Kb	8	4	8	VIFSKQQM	VIFSKQQR	NetMHCpan	188.2	12750.8	67.751	77	0.208	363.498	6741.575	18.546	9458.39	228.41	12750.8	188.2	2790.872523	500.8872766	4024.76011	498.5859086	09-2_par	-0.357142857	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.222	77	0	0	NA	15qA1	chr15-3279130-72007454	4	2	2	0.94	4.253366344	NA	1	1	sgMsh2	cell line
chr13	30381285	30381285	A	C	ENSMUST00000066412.7	1	ENSMUSG00000049115	missense	N/T	111	Agtr1a	ENSMUST00000066412.7:c.332A>C	ENSMUSP00000070958.7:p.Asn111Thr	H-2-Kb	8	8	4	VSFTLYAS	VSFNLYAS	SMM	87.648	97.441	1.112	176	0.023	175.522	192.772	1.098	210.26	257.75	235.6	203.9	97.44061133	87.64759423	175.2830817	147.1431334	09-2_par	0.685714286	1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.03	176	0	0	NA	13qA3.2	chr13-3556297-119495179	4	2	2	0.94	4.253366344	NA	1	0.135745734	sgMsh2	cell line
chr13	22293541	22293541	T	C	ENSMUST00000228382.1	NA	ENSMUSG00000069295	missense	S/P	117	Vmn1r196	ENSMUST00000228382.1:c.349T>C	ENSMUSP00000154358.1:p.Ser117Pro	H-2-Kb	8	9	3	RAPWWGRL	RASWWGRL	NetMHCpan	195.9	896.8	4.578	184	0.109	341.715	1061.965	3.108	1423.61	271.58	896.8	195.9	1129.11974	421.444121	994.8096742	411.8508816	09-2_par	-0.385714286	-0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.095	184	0	0	NA	13qA3.1	chr13-3556297-119495179	4	2	2	0.94	4.253366344	NA	1	0.429861492	sgMsh2	cell line
chr15	76185668	76185668	G	A	ENSMUST00000073418.12	5	ENSMUSG00000022565	missense	R/W	1153	Plec	ENSMUST00000073418.12:c.3457C>T	ENSMUSP00000073124.6:p.Arg1153Trp	H-2-Kb	8	7	5	VHRLWLPL	VHRLRLPL	SMM	145.794	747.722	5.129	25	0.24	184.366	805.542	4.369	756.53	292.75	951.2	214.3	747.7217263	145.794117	854.5549615	154.4329616	09-2_par	0.171428571	0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe	3	0.259	25	0	0	NA	15qD3	chr15-72009072-89532764	5	3	2	0.94	4.253366344	NA	1	1	sgMsh2	cell line
chr13	100316293	100316293	A	G	ENSMUST00000118574.7	1	ENSMUSG00000078942	missense	Y/H	87	Naip6	ENSMUST00000118574.7:c.259T>C	ENSMUSP00000112867.1:p.Tyr87His	H-2-Kb	8	8	4	AGFHHTGV	AGFYHTGV	NetMHCpan	133.8	59.9	0.448	951	0.008	270.002	202.493	0.75	126.54	377.09	59.9	133.8	278.4453695	276.528565	278.4453695	263.475356	09-2_par	-0.128571429	-0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.00953	951	0	0	NA	13qD1	chr13-3556297-119495179	4	2	2	0.94	4.253366344	NA	1	0.043121895	sgMsh2	cell line
chr13	100300288	100300288	A	G	ENSMUST00000118574.7	1	ENSMUSG00000078942	missense	C/R	576	Naip6	ENSMUST00000118574.7:c.1726T>C	ENSMUSP00000112867.1:p.Cys576Arg	H-2-Kb	8	4	8	KNYLFRTR	KNYLFRTC	SMM	148.847	108.578	0.729	622	0.014	331.308	115.139	0.348	121.7	405.73	67.5	652.7	108.5775406	148.8469706	148.504632	256.8857419	09-2_par	-1.128571429	-1.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.017	622	0	0	NA	13qD1	chr13-3556297-119495179	4	2	2	0.94	4.253366344	NA	1	0.076922583	sgMsh2	cell line
chr14	23436016	23436016	TA	T	ENSMUST00000188285.6	1	ENSMUSG00000063142	FS	Y/X	680	Kcnma1	ENSMUST00000188285.6:c.2038del	ENSMUSP00000140275.1:p.Tyr680ThrfsTer31	H-2-Kb	8	8	4	AFFTARPV	NA	SMM	285.588	NA	NA	81	0.321	464.476	NA	NA	NA	585.6	NA	996.8	NA	285.5880296	NA	343.3523309	09-2_par	0.685714286	0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.3	81	0	0	NA	14qA3	chr14-7548571-41174827	4	2	2	0.94	4.253366344	NA	1	1	sgMsh2	cell line
chr13	30381285	30381285	A	C	ENSMUST00000066412.7	1	ENSMUSG00000049115	missense	N/T	111	Agtr1a	ENSMUST00000066412.7:c.332A>C	ENSMUSP00000070958.7:p.Asn111Thr	H-2-Kb	8	11	1	TLYASVFL	NLYASVFL	SMM	282.319	1207.091	4.276	176	0.023	312.559	1642.574	5.255	5505.64	892.94	1961.6	318.4	1207.090967	282.3189304	1323.548926	306.71852	09-2_par	2.042857143	2.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.03	176	0	0	NA	13qA3.2	chr13-3556297-119495179	4	2	2	0.94	4.253366344	NA	1	0.135745734	sgMsh2	cell line
chr14	20723139	20723139	T	C	ENSMUST00000022358.8	1	ENSMUSG00000021819	missense	Y/H	1766	Zswim8	ENSMUST00000022358.8:c.5296T>C	ENSMUSP00000022358.7:p.Tyr1766His	H-2-Kb	8	9	3	MQHIHHRL	MQYIHHRL	SMM	299.737	25.453	0.085	146	0.041	447.386	26.352	0.059	27.25	1480.2	21.7	564.6	25.45305993	299.7367541	32.41455024	330.1718172	09-2_par	-1.328571429	-1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.051	146	0	0	NA	14qA3	chr14-7548571-41174827	4	2	2	0.94	4.253366344	NA	1	0.230767748	sgMsh2	cell line
chr13	30381285	30381285	A	C	ENSMUST00000066412.7	1	ENSMUSG00000049115	missense	N/T	111	Agtr1a	ENSMUST00000066412.7:c.332A>C	ENSMUSP00000070958.7:p.Asn111Thr	H-2-Kb	9	8	4	VSFTLYASV	VSFNLYASV	NetMHC	4.26	3.79	0.89	176	0.023	16.668	16.221	0.973	3.79	4.26	5.2	5.2	31.41304236	32.59192408	27.24269072	28.13519957	09-2_par	1.4	1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.03	176	0	0	NA	13qA3.2	chr13-3556297-119495179	4	2	2	0.94	4.253366344	NA	1	0.135745734	sgMsh2	cell line
chr13	100300288	100300288	A	G	ENSMUST00000118574.7	1	ENSMUSG00000078942	missense	C/R	576	Naip6	ENSMUST00000118574.7:c.1726T>C	ENSMUSP00000112867.1:p.Cys576Arg	H-2-Kb	9	4	8	KNYLFRTRL	KNYLFRTCL	NetMHCpan	5.2	10.4	2	622	0.014	20.306	43.171	2.126	15.53	5.85	10.4	5.2	70.81251187	34.76241981	81.70525693	44.90037829	09-2_par	-0.085714286	-0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.017	622	0	0	NA	13qD1	chr13-3556297-119495179	4	2	2	0.94	4.253366344	NA	1	0.076922583	sgMsh2	cell line
chr12	113838569	113838569	T	C	ENSMUST00000193652.1	NA	ENSMUSG00000094194	missense	S/G	104	Ighv5-16	ENSMUST00000193652.1:c.310A>G	ENSMUSP00000141639.1:p.Ser104Gly	H-2-Kb	9	4	8	ILYLQMSGL	ILYLQMSSL	NetMHCpan	52.3	39.6	0.757	182	0.027	137.236	154.932	1.129	83.27	64.04	39.6	52.3	236.1076181	210.4311361	226.5948317	222.9718309	09-2_par	0.5	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.029	182	0	0	NA	12qF1	chr12-3501831-114367242	6	4	2	0.94	4.253366344	NA	1	0.131220877	sgMsh2	cell line
chr13	67542395	67542395	TA	T	ENSMUST00000181892.8	1	ENSMUSG00000095432	FS	Y/X	249	Zfp748	ENSMUST00000181892.8:c.745del	ENSMUSP00000137928.1:p.Tyr249ThrfsTer47	H-2-Kb	9	44	0	VAMPFVHSI	NA	NetMHCpan	32.9	NA	NA	131	0.153	254.832	NA	NA	NA	98.41	NA	32.9	NA	411.2538721	NA	441.8247089	09-2_par	1.114285714	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.164	131	0	0	NA	13qB3	chr13-3556297-119495179	4	2	2	0.94	4.253366344	NA	1	0.742076681	sgMsh2	cell line
chr14	20729830	20729830	C	A	ENSMUST00000223679.1	NA	ENSMUSG00000039308	missense	S/I	114	Ndst2	ENSMUST00000223679.1:c.341G>T	ENSMUSP00000153036.1:p.Ser114Ile	H-2-Kb	9	6	6	SRFRYITEL	SRFRYSTEL	NetMHCpan	100.6	138.2	1.374	123	0.073	199.505	181.841	0.911	92.82	119.04	138.2	100.6	225.4810248	279.9690348	309.920283	299.3987618	09-2_par	0.157142857	0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.084	123	0	0	NA	14qA3	chr14-7548571-41174827	4	2	2	0.94	4.253366344	NA	1	0.380088056	sgMsh2	cell line
chr14	49682393	49682393	T	G	ENSMUST00000036972.13	1	ENSMUSG00000036242	missense	Q/H	761	Armh4	ENSMUST00000036972.13:c.2283A>C	ENSMUSP00000036220.6:p.Gln761His	H-2-Kb	9	9	3	SMHDRVMLL	SMQDRVMLL	NetMHC	123.2	204.42	1.659	176	0.051	167.402	341.072	2.037	204.42	123.2	420.7	188.8	311.2504586	153.1475311	370.8941642	181.6561058	09-2_par	0.357142857	0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.055	176	0	0	NA	14qC1	chr14-44852972-51204411	4	2	2	0.94	4.253366344	NA	1	0.24886718	sgMsh2	cell line
chr15	3325898	3325898	C	A	ENSMUST00000069451.10	1	ENSMUSG00000055737	missense	R/M	301	Ghr	ENSMUST00000069451.10:c.902G>T	ENSMUSP00000069457.4:p.Arg301Met	H-2-Kb	9	4	8	VIFSKQQMI	VIFSKQQRI	NetMHC	128.02	112.77	0.881	77	0.208	167.824	129.667	0.773	112.77	128.02	141	229.5	118.334124	147.6080354	149.021867	188.039895	09-2_par	-0.357142857	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.222	77	0	0	NA	15qA1	chr15-3279130-72007454	4	2	2	0.94	4.253366344	NA	1	1	sgMsh2	cell line
chr13	54221267	54221267	TC	T	ENSMUST00000038101.3	1	ENSMUSG00000034987	FS	S/X	374	Hrh2	ENSMUST00000038101.3:c.1122del	ENSMUSP00000038170.3:p.Phe375SerfsTer53	H-2-Kb	9	26	0	SNHHYISVL	NA	NetMHCpan	68.7	NA	NA	43	0.209	178.271	NA	NA	NA	141.14	NA	68.7	NA	229.67303	NA	215.4021332	09-2_par	0.571428571	0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.227	43	0	0	NA	13qB1	chr13-3556297-119495179	4	2	2	0.94	4.253366344	NA	1	1	sgMsh2	cell line
chr13	75878849	75878849	T	G	ENSMUST00000022078.11	1	ENSMUSG00000021589	missense	K/N	468	Rhobtb3	ENSMUST00000022078.11:c.1404A>C	ENSMUSP00000022078.5:p.Lys468Asn	H-2-Kb	9	10	2	SNETFLSFL	SKETFLSFL	NetMHC	152.36	2784.6	18.276	121	0.231	305.223	2383.314	7.808	2784.6	152.36	3434.7	227.4	1982.028979	421.8033261	1691.414308	383.0451784	09-2_par	1.171428571	1.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.237	121	0	0	NA	13qC1	chr13-3556297-119495179	4	2	2	0.94	4.253366344	NA	1	1	sgMsh2	cell line
chr14	56761852	56761852	A	C	ENSMUST00000022507.12	1	ENSMUSG00000021938	missense	L/V	316	Pspc1	ENSMUST00000022507.12:c.946T>G	ENSMUSP00000022507.5:p.Leu316Val	H-2-Kb	9	11	1	VMLMRQDLM	LMLMRQDLM	SMM	117.249	337.373	2.877	101	0.297	170.678	505.031	2.959	672.69	215.68	1505.6	463.1	337.3727491	117.2492302	325.2744865	125.6753201	09-2_par	-0.014285714	0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.303	101	0	0	NA	14qC3	chr14-53336808-123291781	4	2	2	0.94	4.253366344	NA	1	1	sgMsh2	cell line
chr14	123515710	123515710	C	A	ENSMUST00000000201.6	5	ENSMUSG00000000197	missense	R/I	288	Nalcn	ENSMUST00000000201.6:c.863G>T	ENSMUSP00000000201.5:p.Arg288Ile	H-2-Kb	9	5	7	WVFLMYIAI	WVFLMYRAI	SMM	126.506	178.694	1.413	55	0.109	190.437	187.572	0.985	117.77	251.38	308	1796.8	178.6940122	126.5056726	196.4490803	129.4941055	09-2_par	2.571428571	2.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.129	55	0	0	NA	14qE5	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	sgMsh2	cell line
chr13	112962851	112962851	A	G	ENSMUST00000038574.6	1	ENSMUSG00000042426	missense	I/V	1137	Dhx29	ENSMUST00000038574.6:c.3409A>G	ENSMUSP00000035244.5:p.Ile1137Val	H-2-Kb	9	10	2	TVYNAYLGW	TIYNAYLGW	NetMHC	263.96	257.63	0.976	61	0.049	396.817	407.426	1.027	257.63	263.96	819.3	850.5	471.0966327	456.1524376	343.7557727	337.4815227	09-2_par	-0.257142857	0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.066	61	0	0	NA	13qD2.2	chr13-3556297-119495179	4	2	2	0.94	4.253366344	NA	1	0.298640616	sgMsh2	cell line
chr15	76622252	76622252	GT	G	ENSMUST00000078803.4	1	ENSMUSG00000115987	FS	N/X	216	Vps28	ENSMUST00000078803.4:c.647del	ENSMUSP00000077856.3:p.Asn216ThrfsTer?	H-2-Kb	9	5	7	SAYNAFTAS	SAYNAFNRF	SMM	204.226	61.96	0.303	111	0.036	329.815	52.55	0.159	43.14	281.84	34.5	452.4	61.95979897	204.225515	87.54876014	377.7896015	09-2_par	0.014285714	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.048	111	0	0	NA	15qD3	chr15-72009072-89532764	5	3	2	0.94	4.253366344	NA	1	0.217193175	sgMsh2	cell line
chr14	29170631	29170631	A	T	ENSMUST00000022567.8	1	ENSMUSG00000021991	missense	F/Y	418	Cacna2d3	ENSMUST00000022567.8:c.1253T>A	ENSMUSP00000022567.7:p.Phe418Tyr	H-2-Kb	9	6	6	ANKGFYTQI	ANKGFFTQI	NetMHCpan	153.5	133	0.866	93	0.043	222.545	313.745	1.41	417.88	298.99	133	153.5	384.6892055	273.5961615	242.8007366	171.4944225	09-2_par	-0.357142857	-0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.055	93	0	0	NA	14qA3	chr14-7548571-41174827	4	2	2	0.94	4.253366344	NA	1	0.24886718	sgMsh2	cell line
chr14	50453867	50453867	G	T	ENSMUST00000214792.1	5	ENSMUSG00000095917	missense	A/S	272	Olfr740	ENSMUST00000214792.1:c.814G>T	ENSMUSP00000148916.1:p.Ala272Ser	H-2-Kb	9	11	1	SGMQKLVTL	AGMQKLVTL	NetMHCpan	247.6	429.1	1.733	230	0.022	423.556	718.749	1.697	707.62	313.47	429.1	247.6	968.523137	625.3310593	729.8775406	533.6419961	09-2_par	0.8	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.027	230	0	0	NA	14qC1	chr14-44852972-51204411	4	2	2	0.94	4.253366344	NA	1	0.122171161	sgMsh2	cell line
chr15	76185668	76185668	G	A	ENSMUST00000073418.12	5	ENSMUSG00000022565	missense	R/W	1153	Plec	ENSMUST00000073418.12:c.3457C>T	ENSMUSP00000073124.6:p.Arg1153Trp	H-2-Kb	9	6	6	TVHRLWLPL	TVHRLRLPL	NetMHCpan	140.4	473.4	3.372	25	0.24	302.662	666.334	2.202	585.79	318.08	473.4	140.4	790.8789199	332.7438214	746.8785726	287.2433612	09-2_par	0.171428571	0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe	3	0.259	25	0	0	NA	15qD3	chr15-72009072-89532764	5	3	2	0.94	4.253366344	NA	1	1	sgMsh2	cell line
chr14	12297605	12297605	CT	C	ENSMUST00000163392.2	1	ENSMUSG00000033111	FS	A/X	67	3830406C13Rik	ENSMUST00000163392.2:c.204del	ENSMUSP00000126960.1:p.Gln69ArgfsTer23	H-2-Kb	9	21	0	SLRCFLLRL	NA	NetMHCpan	136.4	NA	NA	96	0.052	371.76	NA	NA	NA	319.77	NA	136.4	NA	423.7502818	NA	477.8042407	09-2_par	1.1	1.628571429	FALSE	FALSE	FALSE	1	FALSE	0	Strelka2;Vardict	2	0.0521	96	0	0	NA	14qA1	chr14-7548571-41174827	4	2	2	0.94	4.253366344	NA	1	0.235745092	sgMsh2	cell line
chr13	75878849	75878849	T	G	ENSMUST00000022078.11	1	ENSMUSG00000021589	missense	K/N	468	Rhobtb3	ENSMUST00000022078.11:c.1404A>C	ENSMUSP00000022078.5:p.Lys468Asn	H-2-Kb	9	9	3	VSNETFLSF	VSKETFLSF	SMM	343.645	425.706	1.239	121	0.231	405.045	443.114	1.094	688.38	363.15	407.4	540.2	425.7062242	343.6449768	460.5215948	446.9407979	09-2_par	0.128571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.237	121	0	0	NA	13qC1	chr13-3556297-119495179	4	2	2	0.94	4.253366344	NA	1	1	sgMsh2	cell line
chr14	52036009	52036009	A	G	ENSMUST00000214071.1	5	ENSMUSG00000044286	missense	M/T	34	Olfr221	ENSMUST00000214071.1:c.101T>C	ENSMUSP00000150675.1:p.Met34Thr	H-2-Kb	9	6	6	VVFLVTYAI	VVFLVMYAI	NetMHC	404.46	257.9	0.638	55	0.327	474.826	410.59	0.865	257.9	404.46	656.7	462	397.2921646	487.6519891	423.8869047	600.1364431	09-2_par	2.157142857	2.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.353	55	0	0	NA	14qC2	chr14-51825616-52811780	4	2	2	0.94	4.253366344	NA	2	1	sgMsh2	cell line
chr13	91772770	91772770	A	C	ENSMUST00000022120.4	1	ENSMUSG00000021620	missense	I/L	332	Acot12	ENSMUST00000022120.4:c.994A>C	ENSMUSP00000022120.4:p.Ile332Leu	H-2-Kb	9	11	1	LSHKKEVPL	ISHKKEVPL	SMMPMBEC	252.493	129.196	0.512	45	0.067	355.091	143.035	0.403	132.57	410.19	310.7	1123.5	153.5005727	299.9922256	129.1962773	252.4933823	09-2_par	-1.157142857	-1.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.087	45	0	0	NA	13qC3	chr13-3556297-119495179	4	2	2	0.94	4.253366344	NA	1	0.39366263	sgMsh2	cell line
chr12	113490367	113490367	T	C	ENSMUST00000063317.3	NA	ENSMUSG00000051804	missense	V/A	268	Adam6b	ENSMUST00000063317.3:c.803T>C	ENSMUSP00000065529.2:p.Val268Ala	H-2-Kb	9	10	2	TAYTNSDPF	TVYTNSDPF	SMM	336.597	378.538	1.125	334	0.024	436.156	441.835	1.013	455.86	502.27	668.7	603.2	378.5384504	336.5968133	427.809082	370.0411313	09-2_par	-1.228571429	-1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.027	334	0	0	NA	12qF1	chr12-3501831-114367242	6	4	2	0.94	4.253366344	NA	1	0.122171161	sgMsh2	cell line
chr13	100300288	100300288	A	G	ENSMUST00000118574.7	1	ENSMUSG00000078942	missense	C/R	576	Naip6	ENSMUST00000118574.7:c.1726T>C	ENSMUSP00000112867.1:p.Cys576Arg	H-2-Kb	10	4	8	KNYLFRTRLL	KNYLFRTCLL	NetMHCpan	20.7	24	1.159	622	0.014	389.426	404.711	1.039	56.31	25.74	24	20.7	993.8709575	1010.020061	753.1127497	753.1127497	09-2_par	0.642857143	0.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.017	622	0	0	NA	13qD1	chr13-3556297-119495179	4	2	2	0.94	4.253366344	NA	1	0.076922583	sgMsh2	cell line
chr16	16673096	16673096	T	C	ENSMUST00000206365.2	3	ENSMUSG00000048101	missense	K/R	295	Olfr19	ENSMUST00000206365.2:c.884A>G	ENSMUSP00000145655.2:p.Lys295Arg	H-2-Db	9	6	6	YSLRNRDLM	YSLRNKDLM	NetMHC	3.3	4.46	1.352	77	0.234	5.853	8.806	1.505	4.46	3.3	5.9	4.6	11.71170164	7.105914866	14.27479894	9.496640546	09-2_par	-0.928571429	-0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.264	77	0	0	NA	16qA3	chr16-4630421-97886207	4	2	2	0.94	4.253366344	NA	1	1	sgMsh2	cell line
chr17	56632320	56632320	T	G	ENSMUST00000112979.3	1	ENSMUSG00000040828	missense	F/V	50	Catsperd	ENSMUST00000112979.3:c.148T>G	ENSMUSP00000108603.2:p.Phe50Val	H-2-Db	9	5	7	YAFPNTVVL	YAFPNTFVL	NetMHCpan	9.1	7.6	0.835	94	0.223	33.615	30.922	0.92	12.57	10.27	7.6	9.1	49.27424743	62.03260224	49.83907806	56.96000254	09-2_par	1.314285714	1.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.23	94	0	0	NA	17qD	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	1	sgMsh2	cell line
chr16	56261561	56261561	T	A	ENSMUST00000069936.7	1	ENSMUSG00000035270	missense	L/Q	952	Impg2	ENSMUST00000069936.7:c.2855T>A	ENSMUSP00000063648.7:p.Leu952Gln	H-2-Db	9	6	6	SGFQNQEIL	SGFQNLEIL	NetMHCpan	25.8	18.6	0.721	90	0.044	139.987	128.556	0.918	48.39	52.69	18.6	25.8	272.659102	294.1846444	208.7228518	227.2845945	09-2_par	-0.414285714	-0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.056	90	0	0	NA	16qC1.1	chr16-4630421-97886207	4	2	2	0.94	4.253366344	NA	1	0.253392037	sgMsh2	cell line
chr18	20283682	20283682	C	T	ENSMUST00000054128.6	1	ENSMUSG00000034774	missense	T/I	880	Dsg1c	ENSMUST00000054128.6:c.2639C>T	ENSMUSP00000054799.6:p.Thr880Ile	H-2-Db	9	4	8	SSLPNSLII	SSLPNSLTI	NetMHCpan	32.5	12.7	0.391	394	0.023	86.195	24.089	0.279	12.81	54.19	12.7	32.5	35.36877351	118.2006868	48.14708517	150.1654424	09-2_par	1.528571429	1.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.021	394	0	0	NA	18qA2	chr18-5046666-88869177	4	2	2	0.94	4.253366344	NA	1	0.095022014	sgMsh2	cell line
chr17	25861040	25861040	A	G	ENSMUST00000079461.14	5	ENSMUSG00000073434	missense	V/A	107	Wdr90	ENSMUST00000079461.14:c.320T>C	ENSMUSP00000078426.8:p.Val107Ala	H-2-Db	9	11	1	ASASNYIQL	VSASNYIQL	NetMHCpan	86.8	167.8	1.933	85	0.059	129.523	192.941	1.49	108.68	88.98	167.8	86.8	218.0820897	170.0669801	262.162156	201.1731425	09-2_par	0.142857143	0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.063	85	0	0	NA	17qA3.3	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	0.285066042	sgMsh2	cell line
chr16	3592590	3592590	A	G	ENSMUST00000216259.1	5	ENSMUSG00000051003	missense	S/G	65	Olfr161	ENSMUST00000216259.1:c.193A>G	ENSMUSP00000150825.1:p.Ser65Gly	H-2-Db	9	8	4	FFLGNLSFV	FFLSNLSFV	SMM	191.699	80.282	0.419	213	0.192	456.264	114.023	0.25	99.94	647.94	502	1445.2	80.28233585	191.6990674	128.1061561	264.5879126	09-2_par	1.414285714	1.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.189	213	0	0	NA	16qA1	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	sgMsh2	cell line
chr17	29332745	29332745	G	A	ENSMUST00000095427.11	1	ENSMUSG00000024012	missense	R/C	378	Mtch1	ENSMUST00000095427.11:c.1132C>T	ENSMUSP00000093077.4:p.Arg378Cys	H-2-Kb	8	6	6	SSLLFCRV	SSLLFRRV	NetMHC	6.28	4.92	0.783	33	0.091	15.586	15.173	0.973	4.92	6.28	14.1	13.4	16.24575876	17.77215122	17.64980859	19.48677632	09-2_par	1.685714286	1.685714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.096	33	0	0	NA	17qA3.3	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	0.43438635	sgMsh2	cell line
chr17	37924208	37924208	T	G	ENSMUST00000216440.1	5	ENSMUSG00000059030	missense	I/S	214	Olfr128	ENSMUST00000216440.1:c.641T>G	ENSMUSP00000151065.1:p.Ile214Ser	H-2-Kb	8	11	1	SAFSYGQI	IAFSYGQI	NetMHC	11.81	7.95	0.673	719	0.013	28.127	14.12	0.502	7.95	11.81	8.3	14.4	26.65262568	50.2041941	19.94068165	41.85429201	09-2_par	0.442857143	0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.013	719	0	0	NA	17qB1	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	0.058823152	sgMsh2	cell line
chr16	20687417	20687417	CT	C	ENSMUST00000115460.7	5	ENSMUSG00000045983	FS	A/X	1372	Eif4g1	ENSMUST00000115460.7:c.4116del	ENSMUSP00000111120.1:p.Thr1373LeufsTer29	H-2-Kb	8	20	0	VSYARAWV	NA	NetMHC	43.89	NA	NA	106	0.038	71.702	NA	NA	NA	43.89	NA	73.3	NA	70.10354824	NA	75.63799359	09-2_par	0.042857143	0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.047	106	0	0	NA	16qB1	chr16-4630421-97886207	4	2	2	0.94	4.253366344	NA	1	0.212668317	sgMsh2	cell line
chr16	3592590	3592590	A	G	ENSMUST00000216259.1	5	ENSMUSG00000051003	missense	S/G	65	Olfr161	ENSMUST00000216259.1:c.193A>G	ENSMUSP00000150825.1:p.Ser65Gly	H-2-Kb	8	6	6	MYFFLGNL	MYFFLSNL	NetMHCpan	34	14.7	0.432	213	0.192	89.071	59.088	0.663	49.51	88.66	14.7	34	68.66572344	89.4828896	80.11982647	98.3422182	09-2_par	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.189	213	0	0	NA	16qA1	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	sgMsh2	cell line
chr17	18244283	18244283	T	A	ENSMUST00000172190.3	5	ENSMUSG00000090417	missense	S/C	582	Vmn2r94	ENSMUST00000172190.3:c.1744A>T	ENSMUSP00000126386.2:p.Ser582Cys	H-2-Kb	8	8	4	RALCYILL	RALSYILL	NetMHCpan	81.7	43.9	0.537	605	0.028	120.89	69.404	0.574	44.24	116.54	43.9	81.7	94.56708451	125.2391179	104.6501849	151.2655393	09-2_par	2.7	2.7	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.03	605	0	0	NA	17qA3.2	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	0.135745734	sgMsh2	cell line
chr16	58926453	58926453	T	C	ENSMUST00000205986.3	2	ENSMUSG00000090951	missense	I/M	39	Olfr181	ENSMUST00000205986.3:c.117A>G	ENSMUSP00000145877.2:p.Ile39Met	H-2-Kb	8	5	7	AIYLVTMV	AIYLVTIV	NetMHC	143.87	786.44	5.466	254	0.035	259.507	804.095	3.099	786.44	143.87	1131.3	680.2	620.4974485	238.6382195	821.7505435	280.3754606	09-2_par	2.371428571	2.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.038	254	0	0	NA	16qC1.3	chr16-4630421-97886207	4	2	2	0.94	4.253366344	NA	1	0.171944597	sgMsh2	cell line
chr17	40228805	40228805	A	G	ENSMUST00000026499.5	1	ENSMUSG00000025433	missense	V/A	167	Crisp3	ENSMUST00000026499.5:c.500T>C	ENSMUSP00000026499.5:p.Val167Ala	H-2-Kb	8	10	2	YACRYCPV	YVCRYCPV	SMMPMBEC	174.478	161.339	0.925	211	0.232	239.579	312.449	1.304	429.13	286.52	494.4	303	195.7672319	192.6371303	161.3392375	174.4777291	09-2_par	0.514285714	0.514285714	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.218	211	0	0	NA	17qB2	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	0.986419003	sgMsh2	cell line
chr16	3592523	3592523	GA	G	ENSMUST00000216259.1	5	ENSMUSG00000051003	FS	G/X	42	Olfr161	ENSMUST00000216259.1:c.128del	ENSMUSP00000150825.1:p.Asn43ThrfsTer46	H-2-Kb	8	47	0	LSLRYWPF	NA	NetMHCpan	130.4	NA	NA	148	0.209	210.41	NA	NA	NA	465.62	NA	130.4	NA	248.7367755	NA	172.0838049	09-2_par	-0.357142857	-0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.215	148	0	0	NA	16qA1	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	sgMsh2	cell line
chr16	58915901	58915901	GA	G	ENSMUST00000171656.2	2	ENSMUSG00000090629	FS	S/X	247	Olfr180	ENSMUST00000171656.2:c.739del	ENSMUSP00000128358.1:p.Ser247LeufsTer31	H-2-Kb	8	31	0	KTYQWLYF	NA	NetMHCpan	200.7	NA	NA	163	0.233	382.912	NA	NA	NA	489.31	NA	200.7	NA	445.3895263	NA	320.4350395	09-2_par	-0.157142857	-0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.234	163	0	0	NA	16qC1.2	chr16-4630421-97886207	4	2	2	0.94	4.253366344	NA	1	1	sgMsh2	cell line
chr16	58915901	58915901	GA	G	ENSMUST00000171656.2	2	ENSMUSG00000090629	FS	S/X	247	Olfr180	ENSMUST00000171656.2:c.739del	ENSMUSP00000128358.1:p.Ser247LeufsTer31	H-2-Kb	8	29	0	VIKTYQWL	NA	SMM	154.433	NA	NA	163	0.233	282.366	NA	NA	NA	556.53	NA	386.6	NA	154.4329616	NA	178.1312026	09-2_par	-0.285714286	-0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.234	163	0	0	NA	16qC1.2	chr16-4630421-97886207	4	2	2	0.94	4.253366344	NA	1	1	sgMsh2	cell line
chr17	37751964	37751964	A	G	ENSMUST00000174675.3	5	ENSMUSG00000060017	missense	I/V	37	Olfr121	ENSMUST00000174675.3:c.109A>G	ENSMUSP00000133865.3:p.Ile37Val	H-2-Kb	8	4	8	CFLLFTLV	CFLLFTLI	SMM	253.945	461.041	1.816	370	0.143	479.578	724.227	1.51	850.4	581.81	2002	2533.9	461.0414792	253.9451951	598.0534499	377.3462166	09-2_par	2.928571429	2.928571429	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.146	370	0	0	NA	17qB1	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	0.660629241	sgMsh2	cell line
chr16	32961669	32961669	A	G	ENSMUST00000135193.8	5	ENSMUSG00000022801	missense	Y/C	271	Lrch3	ENSMUST00000135193.8:c.812A>G	ENSMUSP00000130708.1:p.Tyr271Cys	H-2-Kb	8	5	7	KIHIFKCL	KIHIFKYL	SMMPMBEC	256.886	92.628	0.361	192	0.177	319.381	76.184	0.239	59.74	598.73	59.4	324.9	102.9769442	313.8629122	92.62751223	256.8857419	09-2_par	1.571428571	1.571428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.193	192	0	0	NA	16qB3	chr16-4630421-97886207	4	2	2	0.94	4.253366344	NA	1	0.873297558	sgMsh2	cell line
chr17	30761096	30761096	GT	G	ENSMUST00000236140.1	NA	ENSMUSG00000033826	FS	F/X	3035	Dnah8	ENSMUST00000236140.1:c.9108del	ENSMUSP00000157469.1:p.Phe3036LeufsTer5	H-2-Kb	8	5	8	TSLDLVFL	TSLDLVFF	SMM	245.89	3997.054	16.255	102	0.088	452.067	3837.777	8.489	5159.69	706.65	3678.5	633.9	3997.053856	245.8895091	3394.220093	270.2340064	09-2_par	2.014285714	2.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.099	102	0	0	NA	17qA3.3	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	0.447960923	sgMsh2	cell line
chr17	37726645	37726645	T	C	ENSMUST00000077498.3	NA	ENSMUSG00000063994	missense	V/A	216	Olfr120	ENSMUST00000077498.3:c.647T>C	ENSMUSP00000094931.1:p.Val216Ala	H-2-Kb	8	8	4	AIFATVVL	AIFVTVVL	SMMPMBEC	301.814	256.295	0.849	529	0.011	426.999	428.454	1.003	891.33	1132.07	552.3	536.5	304.6070846	317.4972734	256.2949211	301.8144301	09-2_par	2.942857143	2.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.013	529	0	0	NA	17qB1	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	0.058823152	sgMsh2	cell line
chr16	3592590	3592590	A	G	ENSMUST00000216259.1	5	ENSMUSG00000051003	missense	S/G	65	Olfr161	ENSMUST00000216259.1:c.193A>G	ENSMUSP00000150825.1:p.Ser65Gly	H-2-Kb	9	5	7	PMYFFLGNL	PMYFFLSNL	SMM	22.862	15.35	0.671	213	0.192	43.133	26.875	0.623	34.5	54.11	28.5	71.6	15.35005727	22.86177783	25.24933823	32.15511003	09-2_par	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.189	213	0	0	NA	16qA1	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	sgMsh2	cell line
chr17	25861040	25861040	A	G	ENSMUST00000079461.14	5	ENSMUSG00000073434	missense	V/A	107	Wdr90	ENSMUST00000079461.14:c.320T>C	ENSMUSP00000078426.8:p.Val107Ala	H-2-Kb	9	11	1	ASASNYIQL	VSASNYIQL	NetMHC	92.74	27.78	0.3	85	0.059	213.967	64.001	0.299	27.78	92.74	58	235.4	70.00192775	208.0223508	79.66177885	219.9125427	09-2_par	0.142857143	0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.063	85	0	0	NA	17qA3.3	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	0.285066042	sgMsh2	cell line
chr17	37751964	37751964	A	G	ENSMUST00000174675.3	5	ENSMUSG00000060017	missense	I/V	37	Olfr121	ENSMUST00000174675.3:c.109A>G	ENSMUSP00000133865.3:p.Ile37Val	H-2-Kb	9	11	1	VLLMFLVSL	ILLMFLVSL	NetMHC	127.87	166.59	1.303	370	0.143	185.568	235.147	1.267	166.59	127.87	243.7	206.3	294.5167504	200.0368468	226.5948317	171.0999962	09-2_par	2.785714286	3.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.146	370	0	0	NA	17qB1	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	0.660629241	sgMsh2	cell line
chr17	37924208	37924208	T	G	ENSMUST00000216440.1	5	ENSMUSG00000059030	missense	I/S	214	Olfr128	ENSMUST00000216440.1:c.641T>G	ENSMUSP00000151065.1:p.Ile214Ser	H-2-Kb	9	11	1	SAFSYGQIF	IAFSYGQIF	NetMHCpan	122.6	83.6	0.682	719	0.013	182.281	145.004	0.795	130.38	156.54	83.6	122.6	159.628341	208.0223508	195.0967344	297.3377153	09-2_par	0.585714286	0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.013	719	0	0	NA	17qB1	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	0.058823152	sgMsh2	cell line
chr17	56632320	56632320	T	G	ENSMUST00000112979.3	1	ENSMUSG00000040828	missense	F/V	50	Catsperd	ENSMUST00000112979.3:c.148T>G	ENSMUSP00000108603.2:p.Phe50Val	H-2-Kb	9	3	9	LFYAFPNTV	LFYAFPNTF	NetMHCpan	233	338.6	1.453	94	0.223	281.738	333.442	1.184	338.69	258.61	338.6	233	228.6177783	304.8667072	328.2842143	424.864065	09-2_par	0.242857143	0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.23	94	0	0	NA	17qD	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	1	sgMsh2	cell line
chr17	22602492	22602492	A	G	ENSMUST00000097381.4	1	ENSMUSG00000094921	missense	T/A	149	Vmn2r112	ENSMUST00000097381.4:c.445A>G	ENSMUSP00000094994.3:p.Thr149Ala	H-2-Kb	9	10	2	TAVTLYTIL	TTVTLYTIL	NetMHCpan	171.1	159.6	0.933	217	0.032	247.205	307.665	1.245	316.62	263.07	159.6	171.1	382.0410236	277.4022632	298.7101638	231.3396105	09-2_par	1.942857143	1.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.033	217	0	0	NA	17qA3.3	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	0.149320308	sgMsh2	cell line
chr17	19053653	19053653	C	A	ENSMUST00000170424.2	5	ENSMUSG00000096717	missense	S/Y	54	Vmn2r98	ENSMUST00000170424.2:c.161C>A	ENSMUSP00000131261.1:p.Ser54Tyr	H-2-Kb	9	7	5	HTFYYLKKM	HTFYSLKKM	NetMHCpan	162.4	2676.5	16.481	147	0.177	315.655	1812.209	5.741	2171.47	303.78	2676.5	162.4	1432.550696	345.2311699	1452.947761	327.5291816	09-2_par	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.188	147	0	0	NA	17qA3.2	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	0.850673269	sgMsh2	cell line
chr16	58915901	58915901	GA	G	ENSMUST00000171656.2	2	ENSMUSG00000090629	FS	S/X	247	Olfr180	ENSMUST00000171656.2:c.739del	ENSMUSP00000128358.1:p.Ser247LeufsTer31	H-2-Kb	9	31	0	KTYQWLYFI	NA	NetMHCpan	171.2	NA	NA	163	0.233	384.332	NA	NA	NA	307.23	NA	171.2	NA	461.4344339	NA	521.4948213	09-2_par	0.585714286	0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.234	163	0	0	NA	16qC1.2	chr16-4630421-97886207	4	2	2	0.94	4.253366344	NA	1	1	sgMsh2	cell line
chr16	3592523	3592523	GA	G	ENSMUST00000216259.1	5	ENSMUSG00000051003	FS	G/X	42	Olfr161	ENSMUST00000216259.1:c.128del	ENSMUSP00000150825.1:p.Asn43ThrfsTer46	H-2-Kb	9	39	0	WMYASPPPL	NA	NetMHCpan	187.9	NA	NA	148	0.209	209.738	NA	NA	NA	330.1	NA	187.9	NA	192.357888	NA	227.1171867	09-2_par	-0.185714286	-0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.215	148	0	0	NA	16qA1	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	sgMsh2	cell line
chr17	20208582	20208582	G	T	ENSMUST00000167382.1	5	ENSMUSG00000091670	missense	S/Y	744	Vmn2r105	ENSMUST00000167382.1:c.2231C>A	ENSMUSP00000129762.1:p.Ser744Tyr	H-2-Kb	9	10	2	SYVAFHCVL	SSVAFHCVL	NetMHCpan	178.2	29.3	0.164	382	0.024	467.373	139.343	0.298	30.23	452.52	29.3	178.2	265.5278017	496.7181164	248.4562923	482.2253089	09-2_par	2.3	2.3	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.024	382	0	0	NA	17qA3.2	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	0.108596587	sgMsh2	cell line
chr16	58926453	58926453	T	C	ENSMUST00000205986.3	2	ENSMUSG00000090951	missense	I/M	39	Olfr181	ENSMUST00000205986.3:c.117A>G	ENSMUSP00000145877.2:p.Ile39Met	H-2-Kb	9	3	9	FSAIYLVTM	FSAIYLVTI	SMM	339.711	641.372	1.888	254	0.035	388.31	695.236	1.79	910.5	521.58	749.1	436.8	641.3720055	339.7113053	579.7623384	339.8208329	09-2_par	2.028571429	2.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.038	254	0	0	NA	16qC1.3	chr16-4630421-97886207	4	2	2	0.94	4.253366344	NA	1	0.171944597	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Db	9	5	9	SNVVNHFFV	SNVVNHFFC	NetMHC	33.28	4264.52	128.141	314	0.061	169.809	3110.826	18.32	4264.52	33.28	4326.5	48.8	1957.131469	290.8171406	1310.901318	321.7881152	09-2_par	1.642857143	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.061	314	0	0	NA	19qA	chr19-7285421-61227351	6	4	2	0.94	4.253366344	NA	1	0.276016327	sgMsh2	cell line
chr18	37680939	37680939	G	T	ENSMUST00000192931.1	1	ENSMUSG00000103037	missense	S/I	161	Pcdhgb1	ENSMUST00000192931.1:c.482G>T	ENSMUSP00000141348.1:p.Ser161Ile	H-2-Db	9	3	9	NSLKMYTVI	NSLKMYTVS	NetMHC	158.89	19903.22	125.264	154	0.455	356.594	9153.28	25.669	19903.22	158.89	14990.9	524.3	2996.539453	391.3992598	3315.660076	321.7881152	09-2_par	1.214285714	1.214285714	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.459	154	0	0	NA	18qB3	chr18-5046666-88869177	4	2	2	0.94	4.253366344	NA	2	1	sgMsh2	cell line
chr19	13502426	13502426	A	G	ENSMUST00000217001.1	2	ENSMUSG00000071629	missense	I/V	28	Olfr1477	ENSMUST00000217001.1:c.82A>G	ENSMUSP00000149565.1:p.Ile28Val	H-2-Kb	8	11	1	VIFTLIYL	IIFTLIYL	SMM	15.267	16.283	1.067	518	0.06	17.014	18.256	1.073	19.54	16.62	27.2	23.8	16.2832091	15.26651821	16.97227266	17.40764414	09-2_par	2.485714286	2.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.061	518	0	0	NA	19qA	chr19-7285421-61227351	6	4	2	0.94	4.253366344	NA	1	0.276016327	sgMsh2	cell line
chr2	32096059	32096059	A	G	ENSMUST00000057423.5	1	ENSMUSG00000051373	missense	N/S	83	Plpp7	ENSMUST00000057423.5:c.248A>G	ENSMUSP00000054337.5:p.Asn83Ser	H-2-Kb	8	6	6	KGIAFSSL	KGIAFNSL	NetMHC	17.64	43.84	2.485	46	0.087	39.051	71.041	1.819	43.84	17.64	52.6	22.8	89.4828896	55.30189331	96.10367602	55.68522772	09-2_par	1.557142857	1.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.097	46	0	0	NA	2qB	chr2-3197272-82054155	4	2	2	0.94	4.253366344	NA	1	0.438911208	sgMsh2	cell line
chr18	37421758	37421758	A	G	ENSMUST00000053073.5	NA	ENSMUSG00000051486	missense	N/S	47	Pcdhb11	ENSMUST00000053073.5:c.140A>G	ENSMUSP00000056148.4:p.Asn47Ser	H-2-Kb	8	5	7	SGYLVASV	SGYLVANV	NetMHC	21.45	8.74	0.407	333	0.027	72.422	32.915	0.454	8.74	21.45	35.3	69.9	30.53092764	74.94454029	37.56124682	85.8499408	09-2_par	1.642857143	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.028	333	0	0	NA	18qB3	chr18-5046666-88869177	4	2	2	0.94	4.253366344	NA	1	0.126696019	sgMsh2	cell line
chr19	13705156	13705156	A	G	ENSMUST00000216366.1	5	ENSMUSG00000051156	missense	T/A	110	Olfr1491	ENSMUST00000216366.1:c.328A>G	ENSMUSP00000149071.1:p.Thr110Ala	H-2-Kb	8	5	7	QMFFFLAL	QMFFFLTL	NetMHCpan	14.6	11.8	0.808	281	0.043	24.739	38.93	1.574	42.4	28.16	11.8	14.6	35.46010359	21.31768301	51.13755976	32.48927349	09-2_par	2.814285714	2.814285714	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.047	281	0	0	NA	19qA	chr19-7285421-61227351	6	4	2	0.94	4.253366344	NA	1	0.212668317	sgMsh2	cell line
chr18	37402610	37402610	G	T	ENSMUST00000057228.1	NA	ENSMUSG00000051242	missense	R/S	552	Pcdhb9	ENSMUST00000057228.1:c.1656G>T	ENSMUSP00000058801.1:p.Arg552Ser	H-2-Kb	8	11	1	SALDYEAL	RALDYEAL	NetMHC	41.86	153.35	3.663	240	0.054	95.816	232.025	2.422	153.35	41.86	248.9	89.6	215.149331	102.0328459	269.6124854	136.0629867	09-2_par	0.414285714	0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.058	240	0	0	NA	18qB3	chr18-5046666-88869177	4	2	2	0.94	4.253366344	NA	1	0.262441753	sgMsh2	cell line
chr18	61697778	61697778	T	C	ENSMUST00000025472.6	1	ENSMUSG00000024579	missense	Y/C	341	Pcyox1l	ENSMUST00000025472.6:c.1022A>G	ENSMUSP00000025472.1:p.Tyr341Cys	H-2-Kb	8	5	7	VSLVHGCL	VSLVHGYL	NetMHC	42.26	7.17	0.17	99	0.051	48.333	15.42	0.319	7.17	42.26	15	81.6	15.83944645	48.27696948	17.44777291	48.38825938	09-2_par	1.414285714	1.471428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.055	99	0	0	NA	18qE1	chr18-5046666-88869177	4	2	2	0.94	4.253366344	NA	1	0.24886718	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	8	13	1	VTFPHYWL	NA	NetMHCpan	13.9	NA	NA	314	0.061	31.617	NA	NA	NA	50.29	NA	13.9	NA	24.5323979	NA	38.70258739	09-2_par	-0.157142857	-0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.061	314	0	0	NA	19qA	chr19-7285421-61227351	6	4	2	0.94	4.253366344	NA	1	0.276016327	sgMsh2	cell line
chr19	4290661	4290661	T	C	ENSMUST00000088737.10	1	ENSMUSG00000024858	missense	M/V	257	Grk2	ENSMUST00000088737.10:c.769A>G	ENSMUSP00000086114.4:p.Met257Val	H-2-Kb	8	11	1	VSYAFHTP	MSYAFHTP	SMM	26.348	56.2	2.133	181	0.055	43.101	101.595	2.357	223.64	50.66	127.9	54.8	56.20047679	26.3475356	75.29046857	35.54184757	09-2_par	-0.428571429	0.4	FALSE	FALSE	TRUE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.055	181	0	0	NA	19qA	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	sgMsh2	cell line
chr18	56491908	56491908	A	C	ENSMUST00000237355.1	NA	ENSMUSG00000001700	missense	I/L	358	Gramd3	ENSMUST00000237355.1:c.1072A>C	ENSMUSP00000157710.1:p.Ile358Leu	H-2-Kb	8	4	8	AIIVCALL	AIIVCALI	NetMHC	138.87	1449.26	10.436	61	0.066	182.51	1386.404	7.596	1449.26	138.87	2402.7	511.3	1323.548926	204.0515979	924.1447486	160.9681675	09-2_par	3.585714286	3.585714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.084	61	0	0	NA	18qD3	chr18-5046666-88869177	4	2	2	0.94	4.253366344	NA	1	0.380088056	sgMsh2	cell line
chr2	37202003	37202003	A	AT	ENSMUST00000218602.1	5	ENSMUSG00000059429	FS	Y/YX	254	Olfr365	ENSMUST00000218602.1:c.762dup	ENSMUSP00000151617.1:p.Gly255TrpfsTer9	H-2-Kb	8	9	4	LFYWEYHL	NA	SMMPMBEC	158.03	NA	NA	194	0.052	180.961	NA	NA	NA	188.31	NA	178.8	NA	183.1217795	NA	158.0301673	09-2_par	-0.514285714	-0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.059	194	0	0	NA	2qB	chr2-3197272-82054155	4	2	2	0.94	4.253366344	NA	1	0.266966611	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	8	8	6	VNHFFVTF	VNHFFCDI	NetMHCpan	52.1	72.4	1.39	314	0.061	262.687	291.68	1.11	265.13	217.24	72.4	52.1	318.2291802	353.7854762	330.1718172	308.1342684	09-2_par	0.742857143	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.061	314	0	0	NA	19qA	chr19-7285421-61227351	6	4	2	0.94	4.253366344	NA	1	0.276016327	sgMsh2	cell line
chr2	76732118	76732118	GT	G	ENSMUST00000111846.8	5	ENSMUSG00000051747	FS	K/X	27048	Ttn	ENSMUST00000111846.8:c.81144del	ENSMUSP00000107477.2:p.Lys27048AsnfsTer39	H-2-Kb	8	24	0	KIWKSASL	NA	SMMPMBEC	197.124	NA	NA	159	0.069	216.815	NA	NA	NA	218.48	NA	312.2	NA	215.149331	NA	197.1242255	09-2_par	0.528571429	0.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.066	159	0	0	NA	2qC3	chr2-3197272-82054155	4	2	2	0.94	4.253366344	NA	1	0.298640616	sgMsh2	cell line
chr2	31912023	31912023	A	T	ENSMUST00000028187.6	1	ENSMUSG00000026840	missense	H/L	481	Lamc3	ENSMUST00000028187.6:c.1442A>T	ENSMUSP00000028187.6:p.His481Leu	H-2-Kb	8	4	8	GTFNLQPL	GTFNLQPH	SMMPMBEC	183.544	7938.528	43.251	88	0.045	232.877	24312.774	104.402	31024.73	345.98	21664.3	241.5	26961.24854	224.2538976	7938.528349	183.5439188	09-2_par	0.157142857	0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.046	88	0	0	NA	2qB	chr2-3197272-82054155	4	2	2	0.94	4.253366344	NA	1	0.208143459	sgMsh2	cell line
chr2	76732118	76732118	GT	G	ENSMUST00000111846.8	5	ENSMUSG00000051747	FS	K/X	27048	Ttn	ENSMUST00000111846.8:c.81144del	ENSMUSP00000107477.2:p.Lys27048AsnfsTer39	H-2-Kb	8	29	0	ASLQLPKL	NA	SMMPMBEC	291.568	NA	NA	159	0.069	323.533	NA	NA	NA	467.13	NA	352.8	NA	294.2659418	NA	291.5680954	09-2_par	0.228571429	0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.066	159	0	0	NA	2qC3	chr2-3197272-82054155	4	2	2	0.94	4.253366344	NA	1	0.298640616	sgMsh2	cell line
chr18	37941753	37941753	A	G	ENSMUST00000043498.8	1	ENSMUSG00000024454	missense	S/P	312	Hdac3	ENSMUST00000043498.8:c.934T>C	ENSMUSP00000037981.7:p.Ser312Pro	H-2-Kb	8	6	6	WTYETPLL	WTYETSLL	SMMPMBEC	359.534	238.638	0.664	170	0.165	430.684	272.762	0.633	289.23	493.46	348.5	494.9	256.2949211	367.908651	238.6382195	359.5340277	09-2_par	-0.028571429	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.163	170	0	0	NA	18qB3	chr18-5046666-88869177	4	2	2	0.94	4.253366344	NA	1	0.737551823	sgMsh2	cell line
chr18	37402610	37402610	G	T	ENSMUST00000057228.1	NA	ENSMUSG00000051242	missense	R/S	552	Pcdhb9	ENSMUST00000057228.1:c.1656G>T	ENSMUSP00000058801.1:p.Arg552Ser	H-2-Kb	8	6	6	QLFALSAL	QLFALRAL	SMM	325.642	396.041	1.216	240	0.054	426.53	519.773	1.219	817.44	522.57	510.2	421.8	396.0408646	325.64169	529.3464441	431.2608157	09-2_par	2.428571429	2.428571429	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.058	240	0	0	NA	18qB3	chr18-5046666-88869177	4	2	2	0.94	4.253366344	NA	1	0.262441753	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	8	17	0	HYWLFLAL	NA	SMMPMBEC	198.948	NA	NA	314	0.061	324.952	NA	NA	NA	632.06	NA	372.1	NA	277.8049629	NA	198.9481935	09-2_par	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.061	314	0	0	NA	19qA	chr19-7285421-61227351	6	4	2	0.94	4.253366344	NA	1	0.276016327	sgMsh2	cell line
chr19	16383254	16383254	G	A	ENSMUST00000025541.5	1	ENSMUSG00000024639	missense	V/M	314	Gnaq	ENSMUST00000025541.5:c.940G>A	ENSMUSP00000025541.5:p.Val314Met	H-2-Kb	8	6	6	ILKMFMDL	ILKMFVDL	NetMHCpan	249.7	319.7	1.28	176	0.176	388.374	474.546	1.222	1460.9	633.96	319.7	249.7	595.3056439	459.9811133	353.7854762	316.7670499	09-2_par	0.971428571	1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.179	176	0	0	NA	19qA	chr19-7285421-61227351	6	4	2	0.94	4.253366344	NA	1	0.809949548	sgMsh2	cell line
chr19	5569855	5569855	GC	G	ENSMUST00000096318.3	1	ENSMUSG00000049562	FS	G/X	434	Ap5b1	ENSMUST00000096318.3:c.1304del	ENSMUSP00000094042.3:p.Pro435HisfsTer40	H-2-Kb	8	40	0	VSKPHTLL	NA	SMM	270.234	NA	NA	128	0.039	332.061	NA	NA	NA	655.92	NA	324.7	NA	270.2340064	NA	339.4220093	09-2_par	-0.371428571	-0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.046	128	0	0	NA	19qA	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	sgMsh2	cell line
chr18	37721926	37721926	A	G	ENSMUST00000195363.1	1	ENSMUSG00000103585	missense	H/R	458	Pcdhgb4	ENSMUST00000195363.1:c.1373A>G	ENSMUSP00000142227.1:p.His458Arg	H-2-Kb	8	6	6	VSYLVRVA	VSYLVHVA	SMM	352.16	390.607	1.109	214	0.028	474.913	482.538	1.016	1581.63	815.27	557	587.8	390.6069803	352.1599796	408.0750101	362.0261985	09-2_par	1.057142857	1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.029	214	0	0	NA	18qB3	chr18-5046666-88869177	4	2	2	0.94	4.253366344	NA	1	0.131220877	sgMsh2	cell line
chr2	32096059	32096059	A	G	ENSMUST00000057423.5	1	ENSMUSG00000051373	missense	N/S	83	Plpp7	ENSMUST00000057423.5:c.248A>G	ENSMUSP00000054337.5:p.Asn83Ser	H-2-Kb	9	6	6	KGIAFSSLL	KGIAFNSLL	NetMHC	49.45	147.45	2.982	46	0.087	240.453	466.442	1.94	147.45	49.45	132	55.2	785.4345477	425.7062242	802.1396792	611.2938126	09-2_par	2.157142857	2.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.097	46	0	0	NA	2qB	chr2-3197272-82054155	4	2	2	0.94	4.253366344	NA	1	0.438911208	sgMsh2	cell line
chr19	4290661	4290661	T	C	ENSMUST00000088737.10	1	ENSMUSG00000024858	missense	M/V	257	Grk2	ENSMUST00000088737.10:c.769A>G	ENSMUSP00000086114.4:p.Met257Val	H-2-Kb	9	11	1	VSYAFHTPD	MSYAFHTPD	SMMPMBEC	46.158	119.468	2.588	181	0.055	51.279	157.215	3.066	193.34	55.34	264.8	139.7	121.0904798	47.21826226	119.4675617	46.15832068	09-2_par	-0.814285714	0.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.055	181	0	0	NA	19qA	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	sgMsh2	cell line
chr19	13705156	13705156	A	G	ENSMUST00000216366.1	5	ENSMUSG00000051156	missense	T/A	110	Olfr1491	ENSMUST00000216366.1:c.328A>G	ENSMUSP00000149071.1:p.Thr110Ala	H-2-Kb	9	4	8	TQMFFFLAL	TQMFFFLTL	NetMHCpan	21.4	17.7	0.827	281	0.043	96.695	109.446	1.132	88.8	72.54	17.7	21.4	134.9304597	127.0895963	130.0918231	120.8509309	09-2_par	2.814285714	2.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.047	281	0	0	NA	19qA	chr19-7285421-61227351	6	4	2	0.94	4.253366344	NA	1	0.212668317	sgMsh2	cell line
chr2	37202003	37202003	A	AT	ENSMUST00000218602.1	5	ENSMUSG00000059429	FS	Y/YX	254	Olfr365	ENSMUST00000218602.1:c.762dup	ENSMUSP00000151617.1:p.Gly255TrpfsTer9	H-2-Kb	9	8	5	VLFYWEYHL	NA	NetMHCpan	45.2	NA	NA	194	0.052	95.931	NA	NA	NA	82.69	NA	45.2	NA	109.1716816	NA	130.6922997	09-2_par	-0.514285714	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.059	194	0	0	NA	2qB	chr2-3197272-82054155	4	2	2	0.94	4.253366344	NA	1	0.266966611	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	9	13	1	VTFPHYWLF	NA	NetMHCpan	32	NA	NA	314	0.061	35.13	NA	NA	NA	109.74	NA	32	NA	35.08407252	NA	35.17628732	09-2_par	0.342857143	0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.061	314	0	0	NA	19qA	chr19-7285421-61227351	6	4	2	0.94	4.253366344	NA	1	0.276016327	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	9	7	7	VVNHFFVTF	VVNHFFCDI	SMM	104.018	301.377	2.897	314	0.061	110.553	279.147	2.525	290.84	180.67	126.9	112.4	301.3769268	104.0183595	267.4545558	108.7051201	09-2_par	0.742857143	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.061	314	0	0	NA	19qA	chr19-7285421-61227351	6	4	2	0.94	4.253366344	NA	1	0.276016327	sgMsh2	cell line
chr19	13454083	13454083	A	G	ENSMUST00000096201.3	5	ENSMUSG00000095189	missense	C/R	145	Olfr1472	ENSMUST00000096201.3:c.433T>C	ENSMUSP00000093915.3:p.Cys145Arg	H-2-Kb	9	9	3	VTRCYMCGI	VTCCYMCGI	NetMHC	188.33	441.89	2.346	367	0.022	299.238	609.711	2.038	441.89	188.33	758.9	198.3	783.6280984	422.7756832	460.5215948	400.1750427	09-2_par	0.742857143	0.742857143	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;Vardict	3	0.025	367	0	0	NA	19qA	chr19-7285421-61227351	6	4	2	0.94	4.253366344	NA	1	0.113121445	sgMsh2	cell line
chr2	32096059	32096059	A	G	ENSMUST00000057423.5	1	ENSMUSG00000051373	missense	N/S	83	Plpp7	ENSMUST00000057423.5:c.248A>G	ENSMUSP00000054337.5:p.Asn83Ser	H-2-Kb	9	8	4	IAFSSLLAI	IAFNSLLAI	NetMHCpan	126.5	133.2	1.053	46	0.087	230.074	260.76	1.133	180.13	192.78	133.2	126.5	380.2857045	267.3683525	341.3893746	329.0409876	09-2_par	2.157142857	2.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.097	46	0	0	NA	2qB	chr2-3197272-82054155	4	2	2	0.94	4.253366344	NA	1	0.438911208	sgMsh2	cell line
chr18	37680939	37680939	G	T	ENSMUST00000192931.1	1	ENSMUSG00000103037	missense	S/I	161	Pcdhgb1	ENSMUST00000192931.1:c.482G>T	ENSMUSP00000141348.1:p.Ser161Ile	H-2-Kb	9	10	2	VIPNPHFSL	VSPNPHFSL	NetMHC	211.65	119.37	0.564	154	0.455	410.119	267.215	0.652	119.37	211.65	107.8	235.3	415.0591573	584.9382211	522.696991	774.9077422	09-2_par	-0.585714286	0.228571429	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.459	154	0	0	NA	18qB3	chr18-5046666-88869177	4	2	2	0.94	4.253366344	NA	2	1	sgMsh2	cell line
chr19	16383254	16383254	G	A	ENSMUST00000025541.5	1	ENSMUSG00000024639	missense	V/M	314	Gnaq	ENSMUST00000025541.5:c.940G>A	ENSMUSP00000025541.5:p.Val314Met	H-2-Kb	9	5	7	FILKMFMDL	FILKMFVDL	NetMHC	268.8	623.27	2.319	176	0.176	358.268	502.216	1.402	623.27	268.8	645.4	411.6	381.1623536	362.3347605	317.8703353	354.201177	09-2_par	0.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.179	176	0	0	NA	19qA	chr19-7285421-61227351	6	4	2	0.94	4.253366344	NA	1	0.809949548	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	9	17	0	HYWLFLALV	NA	SMM	304.166	NA	NA	314	0.061	437.286	NA	NA	NA	459.38	NA	1465.1	NA	304.1655332	NA	415.1929781	09-2_par	2.757142857	2.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.061	314	0	0	NA	19qA	chr19-7285421-61227351	6	4	2	0.94	4.253366344	NA	1	0.276016327	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	9	14	0	TFPHYWLFL	NA	NetMHCpan	353	NA	NA	314	0.061	400.076	NA	NA	NA	462.8	NA	353	NA	426.6875784	NA	373.4650797	09-2_par	0.485714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.061	314	0	0	NA	19qA	chr19-7285421-61227351	6	4	2	0.94	4.253366344	NA	1	0.276016327	sgMsh2	cell line
chr18	37941753	37941753	A	G	ENSMUST00000043498.8	1	ENSMUSG00000024454	missense	S/P	312	Hdac3	ENSMUST00000043498.8:c.934T>C	ENSMUSP00000037981.7:p.Ser312Pro	H-2-Kb	9	4	8	RCWTYETPL	RCWTYETSL	SMMPMBEC	408.555	698.634	1.71	170	0.165	457.95	789.442	1.724	880.25	477.4	638	438.5	1244.829868	714.6773197	698.6344547	408.5545015	09-2_par	-0.7	-0.7	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.163	170	0	0	NA	18qB3	chr18-5046666-88869177	4	2	2	0.94	4.253366344	NA	1	0.737551823	sgMsh2	cell line
chr19	5569855	5569855	GC	G	ENSMUST00000096318.3	1	ENSMUSG00000049562	FS	G/X	434	Ap5b1	ENSMUST00000096318.3:c.1304del	ENSMUSP00000094042.3:p.Pro435HisfsTer40	H-2-Kb	9	40	0	VSKPHTLLL	NA	NetMHCpan	263.8	NA	NA	128	0.039	279.773	NA	NA	NA	711.69	NA	263.8	NA	286.4903513	NA	273.0549161	09-2_par	0.285714286	0.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.046	128	0	0	NA	19qA	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	sgMsh2	cell line
chr19	13705156	13705156	A	G	ENSMUST00000216366.1	5	ENSMUSG00000051156	missense	T/A	110	Olfr1491	ENSMUST00000216366.1:c.328A>G	ENSMUSP00000149071.1:p.Thr110Ala	H-2-Kb	9	5	7	QMFFFLALG	QMFFFLTLG	SMM	107.922	144.248	1.337	281	0.043	440.66	649.506	1.474	1099.37	734.68	1443.9	1219.9	144.2480663	107.9220037	199.6411211	146.6391721	09-2_par	2.485714286	2.814285714	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.047	281	0	0	NA	19qA	chr19-7285421-61227351	6	4	2	0.94	4.253366344	NA	1	0.212668317	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	9	16	0	PHYWLFLAL	NA	SMM	166.001	NA	NA	314	0.061	366.318	NA	NA	NA	971.99	NA	541.1	NA	166.0007308	NA	191.5358177	09-2_par	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.061	314	0	0	NA	19qA	chr19-7285421-61227351	6	4	2	0.94	4.253366344	NA	1	0.276016327	sgMsh2	cell line
chr2	37202003	37202003	A	AT	ENSMUST00000218602.1	5	ENSMUSG00000059429	FS	Y/YX	254	Olfr365	ENSMUST00000218602.1:c.762dup	ENSMUSP00000151617.1:p.Gly255TrpfsTer9	H-2-Kb	9	10	3	FYWEYHLCL	NA	SMMPMBEC	298.71	NA	NA	194	0.052	449.646	NA	NA	NA	994.26	NA	502	NA	397.2921646	NA	298.7101638	09-2_par	0.171428571	0.171428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.059	194	0	0	NA	2qB	chr2-3197272-82054155	4	2	2	0.94	4.253366344	NA	1	0.266966611	sgMsh2	cell line
chr2	158768178	158768178	C	T	ENSMUST00000029183.2	1	ENSMUSG00000027654	missense	P/L	22	Fam83d	ENSMUST00000029183.2:c.65C>T	ENSMUSP00000029183.2:p.Pro22Leu	H-2-Db	9	8	4	CGPLNPTEL	CGPPNPTEL	NetMHC	65.56	425.32	6.487	37	0.162	216.905	644.766	2.973	425.32	65.56	306.4	93.7	864.2114181	340.1104688	1154.968129	410.7428385	09-2_par	-0.471428571	-0.214285714	TRUE	FALSE	FALSE	1	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.184	37	0	0	NA	2qH1	chr2-97628777-181807525	4	2	2	0.94	4.253366344	NA	1	0.832573837	sgMsh2	cell line
chr2	87107793	87107793	A	G	ENSMUST00000215828.2	5	ENSMUSG00000075160	missense	L/P	198	Olfr259	ENSMUST00000215828.2:c.593T>C	ENSMUSP00000149161.1:p.Leu198Pro	H-2-Db	9	4	8	DAHINEMPL	DAHINEMLL	SMM	88.434	284.852	3.221	346	0.017	275.787	1610.701	5.84	3027.51	416.5	2773.1	756.8	284.8524768	88.4341488	448.3013018	135.0734523	09-2_par	-0.228571429	-0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.021	346	0	0	NA	2qD	chr2-82235500-94430128	6	4	2	0.94	4.253366344	NA	1	0.095022014	sgMsh2	cell line
chr2	132240580	132240580	A	G	ENSMUST00000110164.7	2	ENSMUSG00000027341	missense	F/S	90	Tmem230	ENSMUST00000110164.7:c.269T>C	ENSMUSP00000105793.1:p.Phe90Ser	H-2-Kb	8	11	1	SLPGFYHL	FLPGFYHL	NetMHCpan	98.2	522.1	5.317	109	0.266	164.475	459.527	2.794	694.44	114.79	522.1	98.2	387.9180607	214.1608096	396.9538331	229.4774419	09-2_par	0.557142857	0.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.269	109	0	0	NA	2qF2	chr2-97628777-181807525	4	2	2	0.94	4.253366344	NA	1	1	sgMsh2	cell line
chr3	28794409	28794409	G	A	ENSMUST00000060500.8	1	ENSMUSG00000050192	missense	C/Y	139	Eif5a2	ENSMUST00000060500.8:c.416G>A	ENSMUSP00000050289.7:p.Cys139Tyr	H-2-Kb	8	7	5	VSVMYAMS	VSVMCAMS	SMM	72.734	814.217	11.194	151	0.252	100.979	2855.808	28.281	5114.17	120.91	4897.4	389.8	814.2166892	72.73442335	792.027024	81.04757034	09-2_par	0.985714286	1.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.257	151	0	0	NA	3qA3	chr3-10012637-159913826	4	2	2	0.94	4.253366344	NA	1	1	sgMsh2	cell line
chr2	88959110	88959110	A	G	ENSMUST00000215781.1	5	ENSMUSG00000048226	missense	I/V	215	Olfr1212	ENSMUST00000215781.1:c.643A>G	ENSMUSP00000149781.1:p.Ile215Val	H-2-Kb	8	4	8	IIFSMLLV	IIFSMLLI	SMM	126.981	230.537	1.816	443	0.02	136.933	218.268	1.594	225.8	149.95	115.3	140.9	230.5366617	126.9813676	210.7366151	132.965815	09-2_par	2.885714286	2.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.021	443	0	0	NA	2qE1	chr2-82235500-94430128	6	4	2	0.94	4.253366344	NA	1	0.095022014	sgMsh2	cell line
chr2	119139420	119139420	GT	G	ENSMUST00000094695.11	1	ENSMUSG00000070730	FS	T/X	387	Rmdn3	ENSMUST00000094695.11:c.1159del	ENSMUSP00000092283.5:p.Thr387ArgfsTer46	H-2-Kb	8	37	0	YSQDFQKL	NA	SMM	227.898	NA	NA	119	0.202	263.57	NA	NA	NA	233.55	NA	302.9	NA	227.8977303	NA	293.5891489	09-2_par	-1.228571429	-1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2017	119	0	0	NA	2qE5	chr2-97628777-181807525	4	2	2	0.94	4.253366344	NA	1	0.912663821	sgMsh2	cell line
chr2	89125321	89125321	T	A	ENSMUST00000215816.2	5	ENSMUSG00000075101	missense	R/W	137	Olfr1222	ENSMUST00000215816.2:c.409A>T	ENSMUSP00000150144.1:p.Arg137Trp	H-2-Kb	8	6	6	SSIMTWRL	SSIMTRRL	NetMHCpan	159.7	230.6	1.444	499	0.016	241.009	158.186	0.656	99.93	260.84	230.6	159.7	179.3659491	282.3189304	137.0061303	221.1770188	09-2_par	0.471428571	0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.016	499	0	0	NA	2qE1	chr2-82235500-94430128	6	4	2	0.94	4.253366344	NA	1	0.072397725	sgMsh2	cell line
chr2	89156435	89156435	G	A	ENSMUST00000216833.1	5	ENSMUSG00000075099	missense	L/F	247	Olfr1224-ps1	ENSMUST00000216833.1:c.739C>T	ENSMUSP00000149046.1:p.Leu247Phe	H-2-Kb	8	9	3	VVFLFFVP	VVLLFFVP	SMM	83.703	349.736	4.178	473	0.023	217.94	869.934	3.992	1351.95	346.19	3062.4	714.8	349.7357273	83.70280268	387.9180607	89.68916897	09-2_par	2.714285714	3.542857143	FALSE	FALSE	TRUE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.02	473	0	0	NA	2qE1	chr2-82235500-94430128	6	4	2	0.94	4.253366344	NA	1	0.090497156	sgMsh2	cell line
chr2	90296129	90296129	A	G	ENSMUST00000214356.2	3	ENSMUSG00000080809	missense	V/A	244	Olfr1273-ps	ENSMUST00000214356.2:c.731T>C	ENSMUSP00000150797.1:p.Val244Ala	H-2-Kb	8	10	2	VAILFFGP	VVILFFGP	SMM	225.289	228.95	1.016	372	0.022	379.677	484.135	1.275	739.32	511.76	1159.7	523.3	228.9496585	225.2890066	228.9496585	247.5939338	09-2_par	1.957142857	2.785714286	FALSE	FALSE	TRUE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.025	372	0	0	NA	2qE1	chr2-82235500-94430128	6	4	2	0.94	4.253366344	NA	1	0.113121445	sgMsh2	cell line
chr2	89156435	89156435	G	A	ENSMUST00000216833.1	5	ENSMUSG00000075099	missense	L/F	247	Olfr1224-ps1	ENSMUST00000216833.1:c.739C>T	ENSMUSP00000149046.1:p.Leu247Phe	H-2-Kb	8	7	5	ITVVFLFF	ITVVLLFF	SMMPMBEC	232.67	2481.647	10.666	473	0.023	436.739	4130.91	9.459	4914.17	555.98	5075.9	907.7	3347.649647	317.4972734	2481.646968	232.6697911	09-2_par	2.842857143	3.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.02	473	0	0	NA	2qE1	chr2-82235500-94430128	6	4	2	0.94	4.253366344	NA	1	0.090497156	sgMsh2	cell line
chr2	90296129	90296129	A	G	ENSMUST00000214356.2	3	ENSMUSG00000080809	missense	V/A	244	Olfr1273-ps	ENSMUST00000214356.2:c.731T>C	ENSMUSP00000150797.1:p.Val244Ala	H-2-Kb	8	11	1	AILFFGPA	VILFFGPA	SMMPMBEC	255.705	74.6	0.292	372	0.022	409.107	103.202	0.252	125.17	696.41	173	512.2	81.23440428	306.013087	74.60020141	255.7054591	09-2_par	1.957142857	1.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.025	372	0	0	NA	2qE1	chr2-82235500-94430128	6	4	2	0.94	4.253366344	NA	1	0.113121445	sgMsh2	cell line
chr2	130565017	130565017	A	G	ENSMUST00000145614.1	1	ENSMUSG00000037740	missense	N/S	188	Mrps26	ENSMUST00000145614.1:c.563A>G	ENSMUSP00000123324.1:p.Asn188Ser	H-2-Kb	8	8	4	KSYSWAVT	KSYNWAVT	SMMPMBEC	222.198	245.324	1.104	58	0.052	454.804	529.588	1.164	712.51	748.93	656.7	519.9	402.476011	389.7086091	245.323979	222.1979255	09-2_par	0.214285714	0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.068	58	0	0	NA	2qF1	chr2-97628777-181807525	4	2	2	0.94	4.253366344	NA	1	0.307690331	sgMsh2	cell line
chr3	68927791	68927791	A	G	ENSMUST00000107812.7	5	ENSMUSG00000027778	missense	I/T	439	Ift80	ENSMUST00000107812.7:c.1316T>C	ENSMUSP00000103442.1:p.Ile439Thr	H-2-Kb	8	11	1	TIFLFEAS	IIFLFEAS	SMM	114.483	40.902	0.357	57	0.246	496.639	214.122	0.431	378.83	1363.31	368.3	827.8	40.90157201	114.482736	59.94321055	165.4778997	09-2_par	1.628571429	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.245	57	0	0	NA	3qE1	chr3-10012637-159913826	4	2	2	0.94	4.253366344	NA	1	1	sgMsh2	cell line
chr3	14537323	14537323	A	G	ENSMUST00000169079.7	1	ENSMUSG00000027550	missense	T/A	159	Lrrcc1	ENSMUST00000169079.7:c.475A>G	ENSMUSP00000126560.1:p.Thr159Ala	H-2-Kb	9	5	7	VGLHFLANL	VGLHFLTNL	NetMHC	4.15	7.44	1.793	79	0.114	41.016	55.134	1.344	7.44	4.15	6.9	5.1	102.8276712	76.93252737	105.7426037	77.6694089	09-2_par	1.328571429	1.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.131	79	0	0	NA	3qA1	chr3-10012637-159913826	4	2	2	0.94	4.253366344	NA	1	0.592756373	sgMsh2	cell line
chr2	111227956	111227956	A	G	ENSMUST00000028577.2	1	ENSMUSG00000027157	missense	L/S	164	A26c3	ENSMUST00000028577.2:c.491T>C	ENSMUSP00000028577.2:p.Leu164Ser	H-2-Kb	9	10	2	CSLKYSANM	CLLKYSANM	NetMHC	20.47	263.93	12.894	171	0.029	111.908	569.568	5.09	263.93	20.47	191.6	41.8	875.205423	182.0161819	1216.886295	283.9553136	09-2_par	-0.285714286	0.185714286	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.038	171	0	0	NA	2qE3	chr2-97628777-181807525	4	2	2	0.94	4.253366344	NA	1	0.171944597	sgMsh2	cell line
chr2	132240580	132240580	A	G	ENSMUST00000110164.7	2	ENSMUSG00000027341	missense	F/S	90	Tmem230	ENSMUST00000110164.7:c.269T>C	ENSMUSP00000105793.1:p.Phe90Ser	H-2-Kb	9	10	2	VSLPGFYHL	VFLPGFYHL	NetMHC	22.77	187.13	8.218	109	0.266	93.901	246.108	2.621	187.13	22.77	200.4	30	291.8166046	157.8010905	341.3893746	169.9221522	09-2_par	0.557142857	0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.269	109	0	0	NA	2qF2	chr2-97628777-181807525	4	2	2	0.94	4.253366344	NA	1	1	sgMsh2	cell line
chr2	90296129	90296129	A	G	ENSMUST00000214356.2	3	ENSMUSG00000080809	missense	V/A	244	Olfr1273-ps	ENSMUST00000214356.2:c.731T>C	ENSMUSP00000150797.1:p.Val244Ala	H-2-Kb	9	10	2	VAILFFGPA	VVILFFGPA	NetMHC	27.49	37.64	1.369	372	0.022	72.942	107.929	1.48	37.64	27.49	98.3	44.2	120.2568988	106.9325688	117.5574075	101.6833861	09-2_par	1.957142857	2.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.025	372	0	0	NA	2qE1	chr2-82235500-94430128	6	4	2	0.94	4.253366344	NA	1	0.113121445	sgMsh2	cell line
chr3	31111712	31111712	T	G	ENSMUST00000029194.11	5	ENSMUSG00000027660	missense	L/V	393	Skil	ENSMUST00000029194.11:c.1177T>G	ENSMUSP00000029194.5:p.Leu393Val	H-2-Kb	9	11	1	VHPSYYLYM	LHPSYYLYM	NetMHC	31.83	160.26	5.035	101	0.04	48.479	171.138	3.53	160.26	31.83	112	33.7	182.0161819	63.25720517	236.7282022	91.46395988	09-2_par	-0.085714286	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.044	101	0	0	NA	3qA3	chr3-10012637-159913826	4	2	2	0.94	4.253366344	NA	1	0.199093744	sgMsh2	cell line
chr2	89156435	89156435	G	A	ENSMUST00000216833.1	5	ENSMUSG00000075099	missense	L/F	247	Olfr1224-ps1	ENSMUST00000216833.1:c.739C>T	ENSMUSP00000149046.1:p.Leu247Phe	H-2-Kb	9	9	3	VVFLFFVPC	VVLLFFVPC	SMMPMBEC	36.162	100.288	2.773	473	0.023	50.143	148.756	2.967	174.17	56.32	765.2	166.4	123.3417199	43.96529586	100.2882377	36.16179668	09-2_par	2.471428571	3.542857143	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.02	473	0	0	NA	2qE1	chr2-82235500-94430128	6	4	2	0.94	4.253366344	NA	1	0.090497156	sgMsh2	cell line
chr2	86159924	86159924	A	G	ENSMUST00000215624.1	NA	ENSMUSG00000075202	missense	Y/H	149	Olfr1042	ENSMUST00000215624.1:c.445T>C	ENSMUSP00000151053.1:p.Tyr149His	H-2-Kb	9	11	1	HIYGFTVGL	YIYGFTVGL	NetMHC	58.58	25.31	0.432	350	0.014	88.451	52.888	0.598	25.31	58.58	34.8	65.7	70.97575157	111.2013347	91.46395988	154.6144216	09-2_par	1.142857143	1.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.018	350	0	0	NA	2qD	chr2-82235500-94430128	6	4	2	0.94	4.253366344	NA	1	0.081447441	sgMsh2	cell line
chr2	111335694	111335694	C	A	ENSMUST00000099618.1	NA	ENSMUSG00000096554	missense	R/M	128	Olfr1282	ENSMUST00000099618.1:c.383G>T	ENSMUSP00000097213.1:p.Arg128Met	H-2-Kb	9	10	2	CMPLHYSSI	CRPLHYSSI	NetMHC	94.4	1410.95	14.947	485	0.138	136.949	1266.807	9.25	1410.95	94.4	2800.2	169.4	724.6194716	104.4984864	1122.664526	174.2809827	09-2_par	0.085714286	0.185714286	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.144	485	0	0	NA	2qE3	chr2-97628777-181807525	4	2	2	0.94	4.253366344	NA	1	0.651579525	sgMsh2	cell line
chr2	86160001	86160001	T	C	ENSMUST00000215624.1	NA	ENSMUSG00000075202	missense	Y/C	123	Olfr1042	ENSMUST00000215624.1:c.368A>G	ENSMUSP00000151053.1:p.Tyr123Cys	H-2-Kb	9	6	6	MAYDRCVAI	MAYDRYVAI	NetMHCpan	132.7	14.4	0.109	344	0.049	145.305	30.259	0.208	27.08	145.65	14.4	132.7	39.27443988	184.1238299	33.43874735	144.9606074	09-2_par	0.528571429	0.528571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.052	344	0	0	NA	2qD	chr2-82235500-94430128	6	4	2	0.94	4.253366344	NA	1	0.235292606	sgMsh2	cell line
chr2	91284247	91284247	A	G	ENSMUST00000102594.10	1	ENSMUSG00000040591	missense	F/L	147	1110051M20Rik	ENSMUST00000102594.10:c.439T>C	ENSMUSP00000099654.4:p.Phe147Leu	H-2-Kb	9	8	4	QIQLYYSEF	QIQFYYSEF	SMM	177.873	191.034	1.074	157	0.191	233.567	248.13	1.062	224.46	181.21	352.1	442.3	191.0337056	177.8729877	271.8003427	285.9235978	09-2_par	-0.542857143	-0.3	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.186	157	0	0	NA	2qE1	chr2-82235500-94430128	6	4	2	0.94	4.253366344	NA	1	0.841623553	sgMsh2	cell line
chr3	68927791	68927791	A	G	ENSMUST00000107812.7	5	ENSMUSG00000027778	missense	I/T	439	Ift80	ENSMUST00000107812.7:c.1316T>C	ENSMUSP00000103442.1:p.Ile439Thr	H-2-Kb	9	11	1	TIFLFEAST	IIFLFEAST	NetMHC	181.4	78.59	0.433	57	0.246	236.705	140.504	0.594	78.59	181.4	219.4	418.7	139.6722084	239.3922023	141.3350901	234.0183969	09-2_par	0.885714286	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.245	57	0	0	NA	3qE1	chr3-10012637-159913826	4	2	2	0.94	4.253366344	NA	1	1	sgMsh2	cell line
chr2	164889390	164889390	T	C	ENSMUST00000041643.4	1	ENSMUSG00000039849	missense	L/P	448	Pcif1	ENSMUST00000041643.4:c.1343T>C	ENSMUSP00000039555.3:p.Leu448Pro	H-2-Kb	9	4	8	SYFSKLWPL	SYFSKLWLL	SMM	92.281	117.52	1.274	310	0.019	111.794	172.65	1.544	225.15	185.78	181.9	106.3	117.5195176	92.28051297	163.3992279	117.287033	09-2_par	0.457142857	0.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.024	310	0	0	NA	2qH3	chr2-97628777-181807525	4	2	2	0.94	4.253366344	NA	1	0.108596587	sgMsh2	cell line
chr2	119139420	119139420	GT	G	ENSMUST00000094695.11	1	ENSMUSG00000070730	FS	T/X	387	Rmdn3	ENSMUST00000094695.11:c.1159del	ENSMUSP00000092283.5:p.Thr387ArgfsTer46	H-2-Kb	9	45	0	DGYIFLSAI	NA	NetMHC	187.49	NA	NA	119	0.202	309.473	NA	NA	NA	187.49	NA	212.4	NA	406.5462879	NA	510.7989549	09-2_par	2.185714286	2.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2017	119	0	0	NA	2qE5	chr2-97628777-181807525	4	2	2	0.94	4.253366344	NA	1	0.912663821	sgMsh2	cell line
chr2	91284247	91284247	A	G	ENSMUST00000102594.10	1	ENSMUSG00000040591	missense	F/L	147	1110051M20Rik	ENSMUST00000102594.10:c.439T>C	ENSMUSP00000099654.4:p.Phe147Leu	H-2-Kb	9	9	3	IQLYYSEFL	IQFYYSEFL	NetMHCpan	192.4	29.6	0.154	157	0.191	382.31	125.453	0.328	51.33	204.72	29.6	192.4	199.5767748	559.8993973	219.4067579	608.4851727	09-2_par	0.5	0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.186	157	0	0	NA	2qE1	chr2-82235500-94430128	6	4	2	0.94	4.253366344	NA	1	0.841623553	sgMsh2	cell line
chr2	91284247	91284247	A	G	ENSMUST00000102594.10	1	ENSMUSG00000040591	missense	F/L	147	1110051M20Rik	ENSMUST00000102594.10:c.439T>C	ENSMUSP00000099654.4:p.Phe147Leu	H-2-Kb	9	3	9	FLFAFQIQL	FLFAFQIQF	NetMHCpan	235.9	1129.7	4.789	157	0.191	317.333	742.822	2.341	735.56	268.86	1129.7	235.9	750.0841699	444.7438999	632.7760017	365.8053055	09-2_par	1.242857143	2.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.186	157	0	0	NA	2qE1	chr2-82235500-94430128	6	4	2	0.94	4.253366344	NA	1	0.841623553	sgMsh2	cell line
chr2	89156435	89156435	G	A	ENSMUST00000216833.1	5	ENSMUSG00000075099	missense	L/F	247	Olfr1224-ps1	ENSMUST00000216833.1:c.739C>T	ENSMUSP00000149046.1:p.Leu247Phe	H-2-Kb	9	7	5	ITVVFLFFV	ITVVLLFFV	NetMHC	283.33	2231.53	7.876	473	0.023	385.935	1809.542	4.689	2231.53	283.33	5428.9	1558.2	1270.895963	346.02701	1387.55434	425.8434778	09-2_par	3.542857143	3.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.02	473	0	0	NA	2qE1	chr2-82235500-94430128	6	4	2	0.94	4.253366344	NA	1	0.090497156	sgMsh2	cell line
chr2	117177703	117177703	A	G	ENSMUST00000028829.12	1	ENSMUSG00000027351	missense	I/M	363	Spred1	ENSMUST00000028829.12:c.1089A>G	ENSMUSP00000028829.6:p.Ile363Met	H-2-Kb	9	10	2	CMYQVSCML	CIYQVSCML	SMM	228.618	511.811	2.239	144	0.229	331.205	563.356	1.701	483.81	295.31	614.9	367.1	511.811453	228.6177783	851.6281337	411.386466	09-2_par	0.971428571	0.971428571	TRUE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.241	144	0	0	NA	2qE5	chr2-97628777-181807525	4	2	2	0.94	4.253366344	NA	1	1	sgMsh2	cell line
chr2	111379635	111379635	T	C	ENSMUST00000062407.5	5	ENSMUSG00000108931	missense	F/L	212	Olfr1284	ENSMUST00000062407.5:c.634T>C	ENSMUSP00000052153.4:p.Phe212Leu	H-2-Kb	9	5	7	MTLGTFLLL	MTLGTFFLL	NetMHCpan	246.9	192.4	0.779	276	0.033	312.574	264.729	0.847	258.37	322.38	192.4	246.9	271.0878168	302.7680195	408.5545015	416.1500968	09-2_par	2.414285714	2.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.03	276	0	0	NA	2qE3	chr2-97628777-181807525	4	2	2	0.94	4.253366344	NA	1	0.135745734	sgMsh2	cell line
chr2	88025316	88025316	T	C	ENSMUST00000214438.1	5	ENSMUSG00000045150	missense	I/T	198	Olfr1161	ENSMUST00000214438.1:c.593T>C	ENSMUSP00000150251.1:p.Ile198Thr	H-2-Kb	9	8	4	VNQTLLFSL	VNQILLFSL	NetMHCpan	256.9	278.6	1.084	208	0.029	394.623	364.332	0.923	339.52	335.19	278.6	256.9	389.1436965	454.0566075	436.7671833	510.7989549	09-2_par	1.314285714	1.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.035	208	0	0	NA	2qD	chr2-82235500-94430128	6	4	2	0.94	4.253366344	NA	1	0.158370023	sgMsh2	cell line
chr2	120986661	120986661	A	G	ENSMUST00000067582.13	1	ENSMUSG00000054484	missense	T/A	233	Tmem62	ENSMUST00000067582.13:c.697A>G	ENSMUSP00000064310.7:p.Thr233Ala	H-2-Kb	9	4	8	IWFGHFTAS	IWFGHFTTS	SMM	41.22	43.763	1.062	111	0.081	221.645	251.959	1.137	420.31	365.62	547.3	671	43.76329367	41.22019102	83.60841685	77.6694089	09-2_par	0.328571429	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.091	111	0	0	NA	2qE5	chr2-97628777-181807525	4	2	2	0.94	4.253366344	NA	1	0.411762061	sgMsh2	cell line
chr2	87656102	87656102	A	AT	ENSMUST00000135875.3	5	ENSMUSG00000111747	FS	M/NX	273	Olfr1134	ENSMUST00000135875.3:c.817dup	ENSMUSP00000150837.1:p.Met273AsnfsTer23	H-2-Kb	9	20	0	DSYVKPTYL	NA	SMM	254.748	NA	NA	349	0.115	435.96	NA	NA	NA	486.22	NA	545.4	NA	254.7475407	NA	385.7003207	09-2_par	-0.114285714	-0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.115	349	0	0	NA	2qD	chr2-82235500-94430128	6	4	2	0.94	4.253366344	NA	1	0.520358648	sgMsh2	cell line
chr2	119921746	119921746	GT	G	ENSMUST00000110774.7	5	ENSMUSG00000033943	FS	F/X	774	Mga	ENSMUST00000110774.7:c.2322del	ENSMUSP00000106401.1:p.Pro775LeufsTer39	H-2-Kb	9	31	0	ENFKMLLHL	NA	NetMHCpan	313.7	NA	NA	129	0.039	347.684	NA	NA	NA	658.3	NA	313.7	NA	346.02701	NA	349.3413547	09-2_par	1.285714286	1.285714286	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.032	129	0	0	NA	2qE5	chr2-97628777-181807525	4	2	2	0.94	4.253366344	NA	1	0.14479545	sgMsh2	cell line
chr2	89156435	89156435	G	A	ENSMUST00000216833.1	5	ENSMUSG00000075099	missense	L/F	247	Olfr1224-ps1	ENSMUST00000216833.1:c.739C>T	ENSMUSP00000149046.1:p.Leu247Phe	H-2-Kb	9	10	2	VFLFFVPCI	VLLFFVPCI	SMMPMBEC	362.452	773.126	2.133	473	0.023	479.173	915.105	1.91	2187.33	897.6	731.3	551.8	1057.085218	406.5462879	773.1255038	362.4515823	09-2_par	2.714285714	2.714285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.02	473	0	0	NA	2qE1	chr2-82235500-94430128	6	4	2	0.94	4.253366344	NA	1	0.090497156	sgMsh2	cell line
chr5	24477100	24477100	T	C	ENSMUST00000024123.8	1	ENSMUSG00000023353	missense	V/A	198	Agap3	ENSMUST00000024123.8:c.593T>C	ENSMUSP00000024123.4:p.Val198Ala	H-2-Db	9	10	2	FAFSLEDEI	FVFSLEDEI	NetMHC	85.78	1256.91	14.653	116	0.069	123.544	1036.389	8.389	1256.91	85.78	1654.5	193.2	815.8681887	127.5322436	763.0798752	119.5556211	09-2_par	-0.028571429	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.08	116	0	0	NA	5qA3	chr5-3344382-108786463	4	2	2	0.94	4.253366344	NA	1	0.361988625	sgMsh2	cell line
chr4	45307923	45307923	CT	C	ENSMUST00000044673.8	1	ENSMUSG00000035601	FS	L/X	203	Trmt10b	ENSMUST00000044673.8:c.612del	ENSMUSP00000041052.2:p.Pro205LeufsTer8	H-2-Db	9	9	5	FSLFLWKPL	FSLFPLETL	SMM	212.628	545.281	2.564	140	0.043	281.074	540.89	1.924	345.62	310.63	884.2	463.6	545.2805415	212.6277776	536.5003381	251.518538	09-2_par	1.114285714	1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.053	140	0	0	NA	4qB1	chr4-3172993-59912905	3	2	1	0.94	4.253366344	NA	1	0.239817464	sgMsh2	cell line
chr3	105005546	105005546	C	A	ENSMUST00000077548.11	1	ENSMUSG00000062127	missense	A/S	341	Cttnbp2nl	ENSMUST00000077548.11:c.1021G>T	ENSMUSP00000076751.5:p.Ala341Ser	H-2-Kb	8	11	1	SAYSYAKA	AAYSYAKA	NetMHC	11.09	24.13	2.176	115	0.217	44.921	75.024	1.67	24.13	11.09	53.5	32.2	129.0446488	68.82401428	96.54727043	57.64212727	09-2_par	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	115	0	0	NA	3qF2.2	chr3-10012637-159913826	4	2	2	0.94	4.253366344	NA	1	1	sgMsh2	cell line
chr5	20886561	20886561	A	G	ENSMUST00000115259.2	1	ENSMUSG00000045435	missense	Y/C	108	Tmem60	ENSMUST00000115259.2:c.323A>G	ENSMUSP00000110914.2:p.Tyr108Cys	H-2-Kb	8	9	3	LSCVFIPL	LSYVFIPL	SMMPMBEC	18.739	1.883	0.1	157	0.025	26.189	2.268	0.087	2.35	26.63	3.4	62.9	2.186452264	25.74779247	1.882521739	18.73872337	09-2_par	2.2	2.2	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.031	157	0	0	NA	5qA3	chr5-3344382-108786463	4	2	2	0.94	4.253366344	NA	1	0.140270592	sgMsh2	cell line
chr3	133330489	133330489	T	C	ENSMUST00000029644.15	1	ENSMUSG00000028013	missense	W/R	135	Ppa2	ENSMUST00000029644.15:c.403T>C	ENSMUSP00000029644.9:p.Trp135Arg	H-2-Kb	8	9	3	YIRNYGAL	YIWNYGAL	NetMHC	44.22	12.88	0.291	79	0.063	76.279	27.448	0.36	12.88	44.22	52.5	387.1	28.42758718	67.10270075	26.4691503	85.45549615	09-2_par	0.057142857	0.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.064	79	0	0	NA	3qG3	chr3-10012637-159913826	4	2	2	0.94	4.253366344	NA	1	0.2895909	sgMsh2	cell line
chr3	108624645	108624645	A	G	ENSMUST00000051145.14	1	ENSMUSG00000040389	missense	Q/R	449	Wdr47	ENSMUST00000051145.14:c.1346A>G	ENSMUSP00000057482.8:p.Gln449Arg	H-2-Kb	8	11	1	RMYQQMLL	QMYQQMLL	NetMHC	67.4	94.29	1.399	68	0.294	121.812	213.148	1.75	94.29	67.4	182.1	93.4	244.1968177	150.2242346	524.4933667	251.0383085	09-2_par	0.442857143	0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.295	68	0	0	NA	3qF3	chr3-10012637-159913826	4	2	2	0.94	4.253366344	NA	1	1	sgMsh2	cell line
chr4	155966486	155966486	T	C	ENSMUST00000024338.4	1	ENSMUSG00000023571	missense	M/T	304	C1qtnf12	ENSMUST00000024338.4:c.911T>C	ENSMUSP00000024338.4:p.Met304Thr	H-2-Kb	8	12	6	SSFSGTLL	SSFSGMLL	NetMHCpan	66.9	50.3	0.752	79	0.19	86.988	70.723	0.813	34.09	71	50.3	66.9	95.22259222	121.8260042	91.14650073	102.9769442	09-2_par	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.213	79	0	0	NA	4qE2	chr4-115967338-156223608	4	2	2	0.94	4.253366344	NA	1	0.963794714	sgMsh2	cell line
chr4	45307923	45307923	CT	C	ENSMUST00000044673.8	1	ENSMUSG00000035601	FS	L/X	203	Trmt10b	ENSMUST00000044673.8:c.612del	ENSMUSP00000041052.2:p.Pro205LeufsTer8	H-2-Kb	8	10	4	SLFLWKPL	SLFPLETL	NetMHCpan	45.9	278.7	6.072	140	0.043	65.889	861.472	13.075	1564.85	78.53	278.7	45.9	803.0452175	78.47656766	919.8986892	53.30156983	09-2_par	1.114285714	1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.053	140	0	0	NA	4qB1	chr4-3172993-59912905	3	2	1	0.94	4.253366344	NA	1	0.239817464	sgMsh2	cell line
chr4	115014223	115014223	A	G	ENSMUST00000030490.12	1	ENSMUSG00000028718	missense	N/S	330	Stil	ENSMUST00000030490.12:c.989A>G	ENSMUSP00000030490.6:p.Asn330Ser	H-2-Kb	8	6	6	TLHLFSNV	TLHLFNNV	NetMHCpan	103.7	224.2	2.162	93	0.086	136.53	304.681	2.232	334.06	109.1	224.2	103.7	326.3923717	201.7158386	282.9697428	163.9607892	09-2_par	1.014285714	1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.078	93	0	0	NA	4qD1	chr4-62192015-115924094	3	2	1	0.94	4.253366344	NA	1	0.352938909	sgMsh2	cell line
chr5	24477100	24477100	T	C	ENSMUST00000024123.8	1	ENSMUSG00000023353	missense	V/A	198	Agap3	ENSMUST00000024123.8:c.593T>C	ENSMUSP00000024123.4:p.Val198Ala	H-2-Kb	8	8	4	VVFAFSLE	VVFVFSLE	SMM	34.494	33.093	0.959	116	0.069	112.342	92.342	0.822	150.11	183.97	512.5	437.1	33.09329418	34.49371732	34.57323355	40.71364636	09-2_par	1.585714286	2.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.08	116	0	0	NA	5qA3	chr5-3344382-108786463	4	2	2	0.94	4.253366344	NA	1	0.361988625	sgMsh2	cell line
chr3	103928888	103928888	T	C	ENSMUST00000068879.10	1	ENSMUSG00000044098	missense	I/T	414	Rsbn1	ENSMUST00000068879.10:c.1241T>C	ENSMUSP00000069246.4:p.Ile414Thr	H-2-Kb	8	5	7	AYYALATV	AYYALAIV	NetMHC	253.92	755.72	2.976	106	0.066	354.427	877.561	2.476	755.72	253.92	648.4	272.6	999.401507	436.2545806	1204.314735	461.0414792	09-2_par	1.185714286	1.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.066	106	0	0	NA	3qF2.2	chr3-10012637-159913826	4	2	2	0.94	4.253366344	NA	1	0.298640616	sgMsh2	cell line
chr3	153509458	153509458	T	C	ENSMUST00000200397.4	1	ENSMUSG00000052544	missense	I/V	20	St6galnac3	ENSMUST00000200397.4:c.58A>G	ENSMUSP00000143747.1:p.Ile20Val	H-2-Kb	8	11	1	VLLLAMRL	ILLLAMRL	SMM	221.177	235.907	1.067	48	0.104	239.723	253.353	1.057	302.11	262.11	270.8	238.6	235.9065504	221.1770188	234.8226582	240.8463117	09-2_par	2.057142857	2.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.125	48	0	0	NA	3qH3	chr3-10012637-159913826	4	2	2	0.94	4.253366344	NA	1	0.565607227	sgMsh2	cell line
chr4	20064005	20064005	A	C	ENSMUST00000098242.3	1	ENSMUSG00000073987	missense	K/T	234	Ggh	ENSMUST00000098242.3:c.701A>C	ENSMUSP00000095843.3:p.Lys234Thr	H-2-Kb	8	10	2	FTYPVYAV	FKYPVYAV	SMM	232.135	1272.741	5.483	102	0.235	311.21	3820.621	12.277	5414.14	319.82	5562.8	302.6	1272.740898	232.1346655	2227.101447	387.9180607	09-2_par	0.757142857	0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	102	0	0	NA	4qA3	chr4-3172993-59912905	3	2	1	0.94	4.253366344	NA	1	1	sgMsh2	cell line
chr3	153509458	153509458	T	C	ENSMUST00000200397.4	1	ENSMUSG00000052544	missense	I/V	20	St6galnac3	ENSMUST00000200397.4:c.58A>G	ENSMUSP00000143747.1:p.Ile20Val	H-2-Kb	8	4	8	VSFIALCV	VSFIALCI	SMM	205.94	373.887	1.816	48	0.104	246.911	373.028	1.511	640.38	398.71	236.9	259	373.8866857	205.9396641	372.1688324	234.8226582	09-2_par	2.685714286	2.685714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.125	48	0	0	NA	3qH3	chr3-10012637-159913826	4	2	2	0.94	4.253366344	NA	1	0.565607227	sgMsh2	cell line
chr3	103928888	103928888	T	C	ENSMUST00000068879.10	1	ENSMUSG00000044098	missense	I/T	414	Rsbn1	ENSMUST00000068879.10:c.1241T>C	ENSMUSP00000069246.4:p.Ile414Thr	H-2-Kb	9	4	8	AAYYALATV	AAYYALAIV	NetMHC	58.87	162.1	2.754	106	0.066	163.252	247.691	1.517	162.1	58.87	234.7	93.1	260.6813732	233.4049166	369.1900603	312.7879401	09-2_par	1.185714286	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.066	106	0	0	NA	3qF2.2	chr3-10012637-159913826	4	2	2	0.94	4.253366344	NA	1	0.298640616	sgMsh2	cell line
chr3	89645464	89645464	A	G	ENSMUST00000000811.7	1	ENSMUSG00000000794	missense	T/A	492	Kcnn3	ENSMUST00000000811.7:c.1474A>G	ENSMUSP00000000811.7:p.Thr492Ala	H-2-Kb	9	10	2	VASNFLGAM	VTSNFLGAM	NetMHC	84.99	106.12	1.249	104	0.038	203.577	247.137	1.214	106.12	84.99	141.7	134.1	376.7992242	273.5961615	352.5737704	273.0549161	09-2_par	0.8	1.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.051	104	0	0	NA	3qF1	chr3-10012637-159913826	4	2	2	0.94	4.253366344	NA	1	0.230767748	sgMsh2	cell line
chr3	153509458	153509458	T	C	ENSMUST00000200397.4	1	ENSMUSG00000052544	missense	I/V	20	St6galnac3	ENSMUST00000200397.4:c.58A>G	ENSMUSP00000143747.1:p.Ile20Val	H-2-Kb	9	4	8	VSFIALCVL	VSFIALCIL	NetMHCpan	76.8	80.4	1.047	48	0.104	115.737	102.269	0.884	98.83	105.84	80.4	76.8	105.7085218	125.6348137	138.4363053	134.9739632	09-2_par	3.342857143	3.342857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.125	48	0	0	NA	3qH3	chr3-10012637-159913826	4	2	2	0.94	4.253366344	NA	1	0.565607227	sgMsh2	cell line
chr4	45307923	45307923	CT	C	ENSMUST00000044673.8	1	ENSMUSG00000035601	FS	L/X	203	Trmt10b	ENSMUST00000044673.8:c.612del	ENSMUSP00000041052.2:p.Pro205LeufsTer8	H-2-Kb	9	9	5	FSLFLWKPL	FSLFPLETL	NetMHCpan	127.2	1483.2	11.66	140	0.043	215.539	984.497	4.568	761.94	209.13	1483.2	127.2	889.4263671	253.577082	1079.567993	221.9473684	09-2_par	1.114285714	1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.053	140	0	0	NA	4qB1	chr4-3172993-59912905	3	2	1	0.94	4.253366344	NA	1	0.239817464	sgMsh2	cell line
chr4	32725960	32725960	CA	C	ENSMUST00000178134.1	5	ENSMUSG00000058006	FS	A/X	2626	Mdn1	ENSMUST00000178134.1:c.7880del	ENSMUSP00000136222.1:p.Asn2627ThrfsTer27	H-2-Kb	9	10	3	VATRHLFIL	NA	SMM	230.202	NA	NA	78	0.09	308.995	NA	NA	NA	418.19	NA	322.7	NA	230.202481	NA	295.2908568	09-2_par	0.928571429	0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.106	78	0	0	NA	4qA5	chr4-3172993-59912905	3	2	1	0.94	4.253366344	NA	1	0.479634928	sgMsh2	cell line
chr6	57600007	57600007	T	C	ENSMUST00000031817.9	1	ENSMUSG00000029798	missense	L/P	235	Herc6	ENSMUST00000031817.9:c.704T>C	ENSMUSP00000031817.8:p.Leu235Pro	H-2-Db	9	6	6	GALKNPSVI	GALKNLSVI	NetMHC	13.46	7.99	0.594	163	0.074	47.099	27.26	0.579	7.99	13.46	16.8	37.5	48.2636319	70.24574131	37.71985373	56.6982951	09-2_par	0.385714286	0.385714286	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.087	163	0	0	NA	6qB3	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.39366263	sgMsh2	cell line
chr6	58308065	58308065	T	C	ENSMUST00000226971.1	NA	ENSMUSG00000091734	missense	Y/H	257	Vmn1r29	ENSMUST00000226971.1:c.769T>C	ENSMUSP00000154612.1:p.Tyr257His	H-2-Db	9	6	6	VMLWMHDPV	VMLWMYDPV	NetMHC	201.1	104.14	0.518	528	0.019	232.097	122.014	0.526	104.14	201.1	345.8	399.9	126.6543178	236.3850465	117.3734851	227.8085396	09-2_par	0.1	0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.018	528	0	0	NA	6qB3	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.081447441	sgMsh2	cell line
chr5	63806698	63806698	A	T	ENSMUST00000159584.2	1	ENSMUSG00000090061	missense	K/N	1208	Nwd2	ENSMUST00000159584.2:c.3624A>T	ENSMUSP00000124712.1:p.Lys1208Asn	H-2-Db	9	7	5	ILICNALSI	ILICKALSI	NetMHCpan	141.1	7481.9	53.026	119	0.193	238.859	9795.44	41.009	18580.86	208.18	7481.9	141.1	8762.337965	269.537999	10828.54237	322.5299134	09-2_par	1.828571429	2.485714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.195	119	0	0	NA	5qC3.1	chr5-3344382-108786463	4	2	2	0.94	4.253366344	NA	1	0.882347273	sgMsh2	cell line
chr5	145777992	145777992	G	A	ENSMUST00000067479.5	1	ENSMUSG00000054417	missense	L/F	450	Cyp3a44	ENSMUST00000067479.5:c.1348C>T	ENSMUSP00000069932.5:p.Leu450Phe	H-2-Db	9	9	3	FAFMNMKLA	FALMNMKLA	NetMHCpan	192.1	166	0.864	131	0.076	229.45	122.49	0.534	89.77	260.55	166	192.1	116.5789126	234.2178554	128.4014713	224.6828893	09-2_par	0.685714286	0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.086	131	0	0	NA	5qG2	chr5-110099887-151647482	4	2	2	0.94	4.253366344	NA	1	0.389137772	sgMsh2	cell line
chr5	145777992	145777992	G	A	ENSMUST00000067479.5	1	ENSMUSG00000054417	missense	L/F	450	Cyp3a44	ENSMUST00000067479.5:c.1348C>T	ENSMUSP00000069932.5:p.Leu450Phe	H-2-Kb	8	5	7	IGMRFAFM	IGMRFALM	NetMHC	5.51	4.3	0.78	131	0.076	10.961	14.024	1.279	4.3	5.51	5.1	5.9	33.01718172	21.91492557	22.94774419	16.0228586	09-2_par	0.9	1.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.086	131	0	0	NA	5qG2	chr5-110099887-151647482	4	2	2	0.94	4.253366344	NA	1	0.389137772	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	8	4	8	VLVSYTRL	VLVSYTRI	NetMHC	19.39	171.38	8.839	219	0.142	31.763	209.772	6.604	171.38	19.39	99.5	20.3	348.1288376	53.67103866	248.1646968	43.22549746	09-2_par	0.642857143	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.142	219	0	0	NA	6qB2.1	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.642529809	sgMsh2	cell line
chr5	145777992	145777992	G	A	ENSMUST00000067479.5	1	ENSMUSG00000054417	missense	L/F	450	Cyp3a44	ENSMUST00000067479.5:c.1348C>T	ENSMUSP00000069932.5:p.Leu450Phe	H-2-Kb	8	7	5	MRFAFMNM	MRFALMNM	NetMHC	24.7	865.74	35.05	131	0.076	49.807	729.838	14.653	865.74	24.7	991.4	78.6	463.16955	43.92785529	593.9364789	55.68522772	09-2_par	0.457142857	0.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.086	131	0	0	NA	5qG2	chr5-110099887-151647482	4	2	2	0.94	4.253366344	NA	1	0.389137772	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	8	6	6	VSYTRLLV	VSYTRILV	NetMHCpan	35.2	39.9	1.134	219	0.142	94.957	84.621	0.891	32.04	39.69	39.9	35.2	129.3421274	150.2242346	135.1263357	158.7596015	09-2_par	0.642857143	0.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.142	219	0	0	NA	6qB2.1	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.642529809	sgMsh2	cell line
chr6	57210453	57210453	T	C	ENSMUST00000227421.1	NA	ENSMUSG00000064259	missense	M/T	199	Vmn1r13	ENSMUST00000227421.1:c.596T>C	ENSMUSP00000154429.1:p.Met199Thr	H-2-Kb	8	8	4	SAYTVIIL	SAYMVIIL	NetMHC	115.95	94.02	0.811	646	0.04	153.083	167.312	1.093	94.02	115.95	126.3	126.8	208.324333	179.3659491	261.6616044	268.9923939	09-2_par	2.4	2.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.041	646	0	0	NA	6qB3	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.18551917	sgMsh2	cell line
chr5	105606595	105606595	A	G	ENSMUST00000067924.12	1	ENSMUSG00000054720	missense	T/A	79	Lrrc8c	ENSMUST00000067924.12:c.235A>G	ENSMUSP00000066015.6:p.Thr79Ala	H-2-Kb	8	6	6	AVISTAPL	AVISTTPL	NetMHC	116.95	543.07	4.644	114	0.193	194.861	538.657	2.764	543.07	116.95	441.1	206.6	712.4263926	249.310173	534.2444264	183.1217795	09-2_par	1.6	1.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.202	114	0	0	NA	5qE5	chr5-3344382-108786463	4	2	2	0.94	4.253366344	NA	1	0.914021278	sgMsh2	cell line
chr5	128602175	128602175	T	G	ENSMUST00000117102.3	NA	ENSMUSG00000081683	missense	F/V	320	Fzd10	ENSMUST00000117102.3:c.958T>G	ENSMUSP00000114114.2:p.Phe320Val	H-2-Kb	8	6	6	LVLYYVGM	LVLYYFGM	NetMHCpan	67.9	82.6	1.216	120	0.042	231.943	180.72	0.779	115.55	159.98	82.6	67.9	312.4208431	400.6268017	245.8895091	303.9065077	09-2_par	1.585714286	1.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.051	120	0	0	NA	5qG1.3	chr5-110099887-151647482	4	2	2	0.94	4.253366344	NA	1	0.230767748	sgMsh2	cell line
chr6	35270381	35270381	A	G	ENSMUST00000031868.4	1	ENSMUSG00000029843	missense	I/T	568	Slc13a4	ENSMUST00000031868.4:c.1703T>C	ENSMUSP00000031868.4:p.Ile568Thr	H-2-Kb	8	11	1	TVFSYGHC	IVFSYGHC	SMMPMBEC	126.398	45.787	0.362	121	0.099	145.752	48.403	0.332	38.66	171.24	51.8	148.7	51.01994663	142.8038776	45.7867692	126.3979412	09-2_par	0.542857143	0.542857143	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.109	121	0	0	NA	6qB1	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.493209502	sgMsh2	cell line
chr6	30815960	30815960	A	G	ENSMUST00000048774.12	1	ENSMUSG00000025607	missense	V/A	480	Copg2	ENSMUST00000048774.12:c.1439T>C	ENSMUSP00000038368.6:p.Val480Ala	H-2-Kb	8	6	6	FIFNRAVL	FIFNRVVL	SMM	138.912	401.55	2.891	120	0.142	159.887	404.813	2.532	524.31	178.28	359.2	181.6	401.5503419	138.9120754	408.0750101	141.4946437	09-2_par	1.3	1.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.139	120	0	0	NA	6qA3.3	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.628955236	sgMsh2	cell line
chr6	42927588	42927588	G	A	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	R/H	119	Olfr446	ENSMUST00000215369.1:c.356G>A	ENSMUSP00000149013.1:p.Arg119His	H-2-Kb	8	5	7	VVMSYDHF	VVMSYDRF	NetMHCpan	192	217.5	1.133	181	0.039	358.348	309.988	0.865	205.05	207.67	217.5	192	621.9278428	804.8964279	402.476011	509.0260401	09-2_par	0.014285714	0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.04	181	0	0	NA	6qB2.1	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.180994312	sgMsh2	cell line
chr5	122559719	122559719	T	C	ENSMUST00000031426.13	1	ENSMUSG00000029469	missense	H/R	565	Ift81	ENSMUST00000031426.13:c.1694A>G	ENSMUSP00000031426.7:p.His565Arg	H-2-Kb	8	8	4	SKYRYTNC	SKYHYTNC	SMM	88.867	165.859	1.866	167	0.024	164.978	520.745	3.156	824.85	208.13	921.7	665.9	165.8593656	88.86689373	216.6406749	121.8260042	09-2_par	-1.814285714	-1.814285714	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.032	167	0	0	NA	5qF	chr5-110099887-151647482	4	2	2	0.94	4.253366344	NA	1	0.14479545	sgMsh2	cell line
chr6	42818052	42818052	T	G	ENSMUST00000218832.1	5	ENSMUSG00000054431	missense	S/A	194	Olfr450	ENSMUST00000218832.1:c.580T>G	ENSMUSP00000151908.1:p.Ser194Ala	H-2-Kb	8	10	2	IAFNKVMV	ISFNKVMV	NetMHC	217.22	104.8	0.482	179	0.039	420.766	168.775	0.401	104.8	217.22	110.7	242.1	241.4015198	619.070344	226.8506354	599.4321055	09-2_par	1.071428571	1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.04	179	0	0	NA	6qB2.1	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.180994312	sgMsh2	cell line
chr6	18405230	18405230	T	C	ENSMUST00000090601.11	1	ENSMUSG00000000416	missense	Y/C	1090	Cttnbp2	ENSMUST00000090601.11:c.3269A>G	ENSMUSP00000088089.5:p.Tyr1090Cys	H-2-Kb	8	7	5	SSVTCASM	SSVTYASM	NetMHC	276.55	6.31	0.023	218	0.142	362.299	24.523	0.068	6.31	276.55	15.8	475.5	35.70590129	399.7053856	33.24604589	324.8927349	09-2_par	1.157142857	1.157142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.145	218	0	0	NA	6qA2	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.656104383	sgMsh2	cell line
chr6	69283934	69283934	TA	T	ENSMUST00000103349.1	NA	ENSMUSG00000076548	FS	Y/X	70	Igkv4-69	ENSMUST00000103349.1:c.208del	ENSMUSP00000100150.1:p.Tyr70MetfsTer26	H-2-Kb	8	25	0	VAVGLGPL	NA	NetMHC	277.12	NA	NA	627	0.116	319.498	NA	NA	NA	277.12	NA	307.3	NA	344.9371732	NA	331.6958211	09-2_par	1.6	1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1164	627	0	0	NA	6qC1	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.526693449	sgMsh2	cell line
chr5	145777992	145777992	G	A	ENSMUST00000067479.5	1	ENSMUSG00000054417	missense	L/F	450	Cyp3a44	ENSMUST00000067479.5:c.1348C>T	ENSMUSP00000069932.5:p.Leu450Phe	H-2-Kb	8	9	3	FAFMNMKL	FALMNMKL	NetMHCpan	150.9	1046.1	6.932	131	0.076	342.058	1597.042	4.669	2059.63	350.89	1046.1	150.9	1752.830817	419.5077612	1441.252256	333.2268594	09-2_par	0.685714286	0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.086	131	0	0	NA	5qG2	chr5-110099887-151647482	4	2	2	0.94	4.253366344	NA	1	0.389137772	sgMsh2	cell line
chr5	123758488	123758488	A	G	ENSMUST00000031366.11	1	ENSMUSG00000029414	missense	N/D	138	Kntc1	ENSMUST00000031366.11:c.412A>G	ENSMUSP00000031366.7:p.Asn138Asp	H-2-Kb	8	5	7	SQRTYRDL	SQRTYRNL	SMM	239.74	37.217	0.155	89	0.146	352.064	42.914	0.122	25.66	412.56	218.3	1756.2	37.21688324	239.7397234	48.61160944	291.5680954	09-2_par	-2.028571429	-2.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.136	89	0	0	NA	5qF	chr5-110099887-151647482	4	2	2	0.94	4.253366344	NA	1	0.615380662	sgMsh2	cell line
chr5	87410384	87410384	CT	C	ENSMUST00000072818.5	1	ENSMUSG00000061906	FS	R/X	473	Ugt2b38	ENSMUST00000072818.5:c.1417del	ENSMUSP00000072598.5:p.Arg473GlyfsTer5	H-2-Kb	8	5	7	FVMRHKGL	FVMRHKRA	SMMPMBEC	372.169	3747.486	10.069	154	0.045	448.768	7579.452	16.889	10915.32	511.65	8824	397.8	6334.903447	499.7352678	3747.485835	372.1688324	09-2_par	-0.3	-0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.047	154	0	0	NA	5qE1	chr5-3344382-108786463	4	2	2	0.94	4.253366344	NA	1	0.212668317	sgMsh2	cell line
chr6	72515320	72515320	A	G	ENSMUST00000162561.8	1	ENSMUSG00000052631	missense	V/A	181	Sh2d6	ENSMUST00000162561.8:c.542T>C	ENSMUSP00000124673.2:p.Val181Ala	H-2-Kb	8	5	7	QPFTLAAL	QPFTLAVL	SMM	136.691	321.914	2.355	53	0.113	392.013	1659.23	4.233	2868.95	584.16	4165.5	2841.1	321.9141004	136.691025	449.5106648	199.8664966	09-2_par	1.671428571	1.671428571	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.131	53	0	0	NA	6qC1	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.592756373	sgMsh2	cell line
chr5	128602175	128602175	T	G	ENSMUST00000117102.3	NA	ENSMUSG00000081683	missense	F/V	320	Fzd10	ENSMUST00000117102.3:c.958T>G	ENSMUSP00000114114.2:p.Phe320Val	H-2-Kb	8	4	8	VFLVLYYV	VFLVLYYF	SMM	220.161	1001.705	4.55	120	0.042	469.155	1030.407	2.196	1056.8	648.75	5057.8	2653.3	1001.705365	220.1608027	1004.014535	289.5609548	09-2_par	2.314285714	2.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.051	120	0	0	NA	5qG1.3	chr5-110099887-151647482	4	2	2	0.94	4.253366344	NA	1	0.230767748	sgMsh2	cell line
chr5	87694728	87694728	C	T	ENSMUST00000197422.4	1	ENSMUSG00000063157	missense	A/T	147	Csn2	ENSMUST00000197422.4:c.439G>A	ENSMUSP00000143341.1:p.Ala147Thr	H-2-Kb	8	9	3	SLTSLANL	SLASLANL	SMM	381.716	341.775	0.895	103	0.233	487.6	375.638	0.77	720.32	664.91	348.8	569	341.7747702	381.7156799	402.476011	406.2000757	09-2_par	1.171428571	1.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.235	103	0	0	NA	5qE1	chr5-3344382-108786463	4	2	2	0.94	4.253366344	NA	1	1	sgMsh2	cell line
chr6	30815960	30815960	A	G	ENSMUST00000048774.12	1	ENSMUSG00000025607	missense	V/A	480	Copg2	ENSMUST00000048774.12:c.1439T>C	ENSMUSP00000038368.6:p.Val480Ala	H-2-Kb	8	4	8	IRFIFNRA	IRFIFNRV	SMMPMBEC	232.135	48.277	0.208	120	0.142	482.306	47.673	0.099	40.71	683.59	149.1	1240.7	47.06954498	281.0217928	48.27696948	232.1346655	09-2_par	-0.085714286	0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.139	120	0	0	NA	6qA3.3	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.628955236	sgMsh2	cell line
chr6	42927588	42927588	G	A	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	R/H	119	Olfr446	ENSMUST00000215369.1:c.356G>A	ENSMUSP00000149013.1:p.Arg119His	H-2-Kb	8	7	5	MSYDHFVA	MSYDRFVA	NetMHCpan	210.6	270.4	1.284	181	0.039	498.805	1863.908	3.737	962.53	729.61	270.4	210.6	3067.1852	470.6954498	2765.28565	526.9143181	09-2_par	-9.52E-17	0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.04	181	0	0	NA	6qB2.1	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.180994312	sgMsh2	cell line
chr5	109156669	109156669	A	C	ENSMUST00000053253.9	5	ENSMUSG00000091635	missense	L/R	632	Vmn2r13	ENSMUST00000053253.9:c.1895T>G	ENSMUSP00000052977.8:p.Leu632Arg	H-2-Kb	8	4	8	ISLVFCFR	ISLVFCFL	SMM	97.217	4.353	0.045	640	0.022	462.454	4.538	0.01	4.58	782.76	8.7	2356.6	4.352512229	97.21650414	4.495106648	142.1477533	09-2_par	1.542857143	2.828571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.019	640	0	0	NA	5qF	chr5-108794879-110007284	6	3	3	0.94	4.253366344	NA	1	0.085972298	sgMsh2	cell line
chr6	42927588	42927588	G	A	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	R/H	119	Olfr446	ENSMUST00000215369.1:c.356G>A	ENSMUSP00000149013.1:p.Arg119His	H-2-Kb	9	7	5	MSYDHFVAI	MSYDRFVAI	NetMHCpan	7.7	10.2	1.325	181	0.039	28.494	27.923	0.98	18.24	15.66	10.2	7.7	45.51033161	47.10966327	37.6053816	41.32853397	09-2_par	0.757142857	0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.04	181	0	0	NA	6qB2.1	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.180994312	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	9	3	9	LVLVSYTRL	LVLVSYTRI	NetMHC	46.33	202.94	4.38	219	0.142	99.281	285.444	2.875	202.94	46.33	207.6	48.9	371.6293451	149.6614677	363.2871195	157.1267038	09-2_par	0.642857143	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.142	219	0	0	NA	6qB2.1	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.642529809	sgMsh2	cell line
chr5	109156669	109156669	A	C	ENSMUST00000053253.9	5	ENSMUSG00000091635	missense	L/R	632	Vmn2r13	ENSMUST00000053253.9:c.1895T>G	ENSMUSP00000052977.8:p.Leu632Arg	H-2-Kb	9	6	6	LVFCFRCSL	LVFCFLCSL	NetMHCpan	28.7	71.4	2.488	640	0.022	92.193	72.098	0.782	66.27	61.61	71.4	28.7	72.79641631	122.7750162	83.03286055	133.122051	09-2_par	1.3	2.014285714	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Vardict	2	0.019	640	0	0	NA	5qF	chr5-108794879-110007284	6	3	3	0.94	4.253366344	NA	1	0.085972298	sgMsh2	cell line
chr6	58308065	58308065	T	C	ENSMUST00000226971.1	NA	ENSMUSG00000091734	missense	Y/H	257	Vmn1r29	ENSMUST00000226971.1:c.769T>C	ENSMUSP00000154612.1:p.Tyr257His	H-2-Kb	9	6	6	VMLWMHDPV	VMLWMYDPV	NetMHC	142.95	42	0.294	528	0.019	153.199	45.929	0.3	42	142.95	149.5	388.4	42.96452354	150.3522737	48.89337312	156.0450512	09-2_par	0.1	0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.018	528	0	0	NA	6qB3	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.081447441	sgMsh2	cell line
chr5	87887345	87887345	C	T	ENSMUST00000129757.8	5	ENSMUSG00000009580	missense	P/L	56	Odam	ENSMUST00000129757.8:c.167C>T	ENSMUSP00000117898.2:p.Pro56Leu	H-2-Kb	9	7	5	SWIPLFPGF	SWIPPFPGF	SMM	167.151	225.481	1.349	69	0.087	248.263	377.632	1.521	237.36	193.66	1017.7	578.5	225.4810248	167.1513929	517.9048762	302.8656361	09-2_par	1.471428571	1.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.082	69	0	0	NA	5qE1	chr5-3344382-108786463	4	2	2	0.94	4.253366344	NA	1	0.371038341	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	9	4	8	VLVSYTRLL	VLVSYTRIL	NetMHCpan	118.1	254.3	2.153	219	0.142	338.726	712.479	2.103	683.46	204.18	254.3	118.1	741.4980274	473.271116	959.9530659	622.6586131	09-2_par	0.642857143	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.142	219	0	0	NA	6qB2.1	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.642529809	sgMsh2	cell line
chr5	87887345	87887345	C	T	ENSMUST00000129757.8	5	ENSMUSG00000009580	missense	P/L	56	Odam	ENSMUST00000129757.8:c.167C>T	ENSMUSP00000117898.2:p.Pro56Leu	H-2-Kb	9	3	9	GAFNSWIPL	GAFNSWIPP	SMMPMBEC	199.182	1466.392	7.362	69	0.087	221.206	6480.976	29.298	11495.56	212.21	12317	257.9	1061.964502	230.202481	1466.391721	199.1819593	09-2_par	0.614285714	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.082	69	0	0	NA	5qE1	chr5-3344382-108786463	4	2	2	0.94	4.253366344	NA	1	0.371038341	sgMsh2	cell line
chr5	137758482	137758482	TG	T	ENSMUST00000110985.1	2	ENSMUSG00000029723	FS	L/X	57	Tsc22d4	ENSMUST00000110985.1:c.177del	ENSMUSP00000106613.1:p.Pro60GlnfsTer18	H-2-Kb	9	22	0	VGWTKAFSL	NA	NetMHCpan	103.3	NA	NA	75	0.293	321.493	NA	NA	NA	216.16	NA	103.3	NA	472.1826226	NA	426.8251484	09-2_par	0.3	0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.298	75	0	0	NA	5qG2	chr5-110099887-151647482	4	2	2	0.94	4.253366344	NA	1	1	sgMsh2	cell line
chr6	108399280	108399280	C	T	ENSMUST00000032192.8	1	ENSMUSG00000030102	missense	R/W	1235	Itpr1	ENSMUST00000032192.8:c.3703C>T	ENSMUSP00000032192.6:p.Arg1235Trp	H-2-Kb	9	9	3	IMWLAHEFL	IMRLAHEFL	NetMHCpan	173.3	364.8	2.105	147	0.17	275.443	622.207	2.259	738.74	227.21	364.8	173.3	566.3827268	323.6756285	678.0317017	326.7758854	09-2_par	0.657142857	0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.174	147	0	0	NA	6qE1	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.787325259	sgMsh2	cell line
chr5	109156669	109156669	A	C	ENSMUST00000053253.9	5	ENSMUSG00000091635	missense	L/R	632	Vmn2r13	ENSMUST00000053253.9:c.1895T>G	ENSMUSP00000052977.8:p.Leu632Arg	H-2-Kb	9	4	8	ISLVFCFRC	ISLVFCFLC	NetMHC	247.86	537.54	2.169	640	0.022	454.616	531.24	1.169	537.54	247.86	2247.1	909.9	524.9404026	511.811453	463.713778	397.4202571	09-2_par	2.014285714	2.828571429	FALSE	TRUE	FALSE	2	FALSE	0	Mutect2;Vardict	2	0.019	640	0	0	NA	5qF	chr5-108794879-110007284	6	3	3	0.94	4.253366344	NA	1	0.085972298	sgMsh2	cell line
chr5	109156669	109156669	A	C	ENSMUST00000053253.9	5	ENSMUSG00000091635	missense	L/R	632	Vmn2r13	ENSMUST00000053253.9:c.1895T>G	ENSMUSP00000052977.8:p.Leu632Arg	H-2-Kb	9	7	5	VFCFRCSLL	VFCFLCSLL	SMMPMBEC	143.632	384.813	2.679	640	0.022	232.387	554.461	2.386	589.99	255.31	1041.6	920.4	518.9314595	209.4642929	384.8132346	143.6316005	09-2_par	1.442857143	1.442857143	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Vardict	2	0.019	640	0	0	NA	5qF	chr5-108794879-110007284	6	3	3	0.94	4.253366344	NA	1	0.085972298	sgMsh2	cell line
chr5	145777992	145777992	G	A	ENSMUST00000067479.5	1	ENSMUSG00000054417	missense	L/F	450	Cyp3a44	ENSMUST00000067479.5:c.1348C>T	ENSMUSP00000069932.5:p.Leu450Phe	H-2-Kb	9	4	8	CIGMRFAFM	CIGMRFALM	NetMHC	274.65	153.39	0.558	131	0.076	306.849	176.252	0.574	153.39	274.65	471.1	658.7	161.8489924	296.558243	190.6557905	317.1392538	09-2_par	0.9	1.271428571	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;MuSe;Vardict	3	0.086	131	0	0	NA	5qG2	chr5-110099887-151647482	4	2	2	0.94	4.253366344	NA	1	0.389137772	sgMsh2	cell line
chr6	42927588	42927588	G	A	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	R/H	119	Olfr446	ENSMUST00000215369.1:c.356G>A	ENSMUSP00000149013.1:p.Arg119His	H-2-Kb	9	5	7	VVMSYDHFV	VVMSYDRFV	NetMHC	339.02	190.61	0.562	181	0.039	485.4	454.08	0.935	190.61	339.02	459.3	584.2	448.8590645	424.7271271	605.6894373	546.072115	09-2_par	0.014285714	0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.04	181	0	0	NA	6qB2.1	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.180994312	sgMsh2	cell line
chr5	122559719	122559719	T	C	ENSMUST00000031426.13	1	ENSMUSG00000029469	missense	H/R	565	Ift81	ENSMUST00000031426.13:c.1694A>G	ENSMUSP00000031426.7:p.His565Arg	H-2-Kb	9	8	4	SKYRYTNCM	SKYHYTNCM	SMM	345.231	307.688	0.891	167	0.024	387.24	525.106	1.356	727.92	396.69	751.5	482.5	307.6876041	345.2311699	322.2923521	377.7896015	09-2_par	-0.985714286	-0.985714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.032	167	0	0	NA	5qF	chr5-110099887-151647482	4	2	2	0.94	4.253366344	NA	1	0.14479545	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	9	6	6	VSYTRLLVA	VSYTRILVA	NetMHCpan	129.9	163.6	1.259	219	0.142	176.155	270.535	1.536	712.71	415.25	163.6	129.9	323.6756285	203.287184	217.3952246	149.021867	09-2_par	1.014285714	1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.142	219	0	0	NA	6qB2.1	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.642529809	sgMsh2	cell line
chr5	128602175	128602175	T	G	ENSMUST00000117102.3	NA	ENSMUSG00000081683	missense	F/V	320	Fzd10	ENSMUST00000117102.3:c.958T>G	ENSMUSP00000114114.2:p.Phe320Val	H-2-Kb	9	5	7	FLVLYYVGM	FLVLYYFGM	SMMPMBEC	298.023	330.56	1.109	120	0.042	376.102	368.465	0.98	406.37	422.51	1212.2	922.2	299.3022626	329.6932077	330.5597718	298.0231495	09-2_par	1.585714286	2.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.051	120	0	0	NA	5qG1.3	chr5-110099887-151647482	4	2	2	0.94	4.253366344	NA	1	0.230767748	sgMsh2	cell line
chr6	57210453	57210453	T	C	ENSMUST00000227421.1	NA	ENSMUSG00000064259	missense	M/T	199	Vmn1r13	ENSMUST00000227421.1:c.596T>C	ENSMUSP00000154429.1:p.Met199Thr	H-2-Kb	9	8	4	SAYTVIILF	SAYMVIILF	SMM	379.411	316.308	0.834	646	0.04	425.127	352.082	0.828	351.59	425.39	1259.3	742	316.3078717	379.4110717	352.5737704	424.864065	09-2_par	2.542857143	2.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.041	646	0	0	NA	6qB3	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.18551917	sgMsh2	cell line
chr7	108422636	108422636	G	A	ENSMUST00000213521.2	3	ENSMUSG00000095239	missense	D/N	22	Olfr497	ENSMUST00000213521.2:c.64G>A	ENSMUSP00000150439.1:p.Asp22Asn	H-2-Db	9	7	5	LGLTNDPVL	LGLTDDPVL	NetMHC	184.87	11807.82	63.871	362	0.022	303.41	8995.683	29.649	11807.82	184.87	11525.6	343.3	6465.76625	335.4439782	5041.618738	271.3751022	09-2_par	0.357142857	0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.025	362	0	0	NA	7qE3	chr7-105374794-145323643	4	2	2	0.94	4.253366344	NA	1	0.113121445	sgMsh2	cell line
chr7	25272796	25272796	A	G	ENSMUST00000169266.7	1	ENSMUSG00000005442	missense	I/V	651	Cic	ENSMUST00000169266.7:c.1951A>G	ENSMUSP00000132351.1:p.Ile651Val	H-2-Db	10	2	10	FSPINASPVV	FSPINASPVI	NetMHC	14.9	8.41	0.564	47	0.255	465.206	229.143	0.493	8.41	14.9	34.4	92.4	423.8869047	838.0115415	542.8376978	1013.141255	09-2_par	1.257142857	1.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.26	47	0	0	NA	7qA3	chr7-10175819-102421810	4	2	2	0.94	4.253366344	NA	1	1	sgMsh2	cell line
chr7	55933072	55933072	A	C	ENSMUST00000119201.7	1	ENSMUSG00000030452	missense	S/R	308	Nipa2	ENSMUST00000119201.7:c.924T>G	ENSMUSP00000114020.1:p.Ser308Arg	H-2-Kb	8	5	7	VSFSLARL	VSFSLASL	SMMPMBEC	2.476	4.454	1.799	106	0.038	2.725	4.412	1.619	3.46	2.91	4.4	3.9	4.423234863	2.539451951	4.453895263	2.475939338	09-2_par	0.871428571	0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.047	106	0	0	NA	7qB5	chr7-10175819-102421810	4	2	2	0.94	4.253366344	NA	1	0.212668317	sgMsh2	cell line
chr7	19643130	19643130	A	C	ENSMUST00000055242.10	1	ENSMUSG00000002981	missense	F/V	170	Clptm1	ENSMUST00000055242.10:c.508T>G	ENSMUSP00000051293.9:p.Phe170Val	H-2-Kb	8	4	8	SIYIHVYV	SIYIHVYF	NetMHC	15.47	62.57	4.045	71	0.127	41.881	121.629	2.904	62.57	15.47	80.8	57.4	162.4575876	35.70590129	166.6249377	48.05515695	09-2_par	1.657142857	1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.149	71	0	0	NA	7qA3	chr7-10175819-102421810	4	2	2	0.94	4.253366344	NA	1	0.674203814	sgMsh2	cell line
chr7	80717097	80717097	T	A	ENSMUST00000167377.2	1	ENSMUSG00000030536	missense	I/F	1592	Iqgap1	ENSMUST00000167377.2:c.4774A>T	ENSMUSP00000128278.1:p.Ile1592Phe	H-2-Kb	8	7	5	VIFEFGPT	VIFEIGPT	NetMHC	19.03	1460.12	76.727	92	0.043	28.727	1248.514	43.461	1460.12	19.03	1472.7	69.5	1036.907462	32.86548155	614.8086937	24.58895091	09-2_par	0.557142857	1.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.036	92	0	0	NA	7qD3	chr7-10175819-102421810	4	2	2	0.94	4.253366344	NA	1	0.162894881	sgMsh2	cell line
chr7	108066532	108066532	T	C	ENSMUST00000071658.2	NA	ENSMUSG00000063120	missense	M/V	89	Olfr480	ENSMUST00000071658.2:c.265A>G	ENSMUSP00000071583.2:p.Met89Val	H-2-Kb	8	11	1	VYLFLSHL	MYLFLSHL	NetMHCpan	13.1	28.9	2.206	199	0.176	134.327	287.934	2.144	52.58	23.33	28.9	13.1	523.2870654	245.323979	556.8522772	262.8693795	09-2_par	1.271428571	1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.185	199	0	0	NA	7qE3	chr7-105374794-145323643	4	2	2	0.94	4.253366344	NA	1	0.837098695	sgMsh2	cell line
chr6	132856177	132856177	A	G	ENSMUST00000032315.2	NA	ENSMUSG00000030194	missense	H/R	247	Tas2r116	ENSMUST00000032315.2:c.740A>G	ENSMUSP00000032315.2:p.His247Arg	H-2-Kb	8	5	7	SIFFLSRV	SIFFLSHV	NetMHCpan	33.1	32.2	0.973	167	0.03	52.369	59.612	1.138	37.99	41.97	32.2	33.1	81.23440428	62.76824703	93.91608928	74.25744462	09-2_par	1.828571429	1.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.03	167	0	0	NA	6qG1	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.135745734	sgMsh2	cell line
chr6	124061822	124061822	CA	C	ENSMUST00000032238.4	1	ENSMUSG00000096630	FS	A/X	785	Vmn2r26	ENSMUST00000032238.4:c.2359del	ENSMUSP00000032238.3:p.Thr787GlnfsTer21	H-2-Kb	8	16	0	SACWFSAV	NA	NetMHC	53.96	NA	NA	489	0.029	99.452	NA	NA	NA	53.96	NA	96.4	NA	102.5038081	NA	122.3883275	09-2_par	1.628571429	1.628571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.031	489	0	0	NA	6qF2	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.140270592	sgMsh2	cell line
chr7	62419972	62419972	TC	T	ENSMUST00000094340.3	NA	ENSMUSG00000070527	FS	E/X	24	Mkrn3	ENSMUST00000094340.3:c.70del	ENSMUSP00000091898.3:p.Glu24ArgfsTer36	H-2-Kb	8	11	1	RVCLFPPL	NA	SMMPMBEC	44.951	NA	NA	18	0.167	58.684	NA	NA	NA	65.4	NA	82.2	NA	51.96847826	NA	44.95106648	09-2_par	1.985714286	1.985714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.21	18	0	0	NA	7qC	chr7-10175819-102421810	4	2	2	0.94	4.253366344	NA	1	0.950220141	sgMsh2	cell line
chr6	141532679	141532679	A	G	ENSMUST00000032362.11	1	ENSMUSG00000030235	missense	K/R	56	Slco1c1	ENSMUST00000032362.11:c.167A>G	ENSMUSP00000032362.9:p.Lys56Arg	H-2-Kb	8	4	8	LSFVYFAR	LSFVYFAK	NetMHC	71.6	273.33	3.817	80	0.125	97.337	165.283	1.698	273.33	71.6	241.7	126.8	88.86689373	86.84403626	56.4598864	107.830098	09-2_par	0.714285714	1.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.138	80	0	0	NA	6qG2	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.624430378	sgMsh2	cell line
chr6	141532679	141532679	A	G	ENSMUST00000032362.11	1	ENSMUSG00000030235	missense	K/R	56	Slco1c1	ENSMUST00000032362.11:c.167A>G	ENSMUSP00000032362.9:p.Lys56Arg	H-2-Kb	8	5	7	SFVYFARA	SFVYFAKA	NetMHC	104.42	421.4	4.036	80	0.125	172.62	538.576	3.12	421.4	104.42	215.7	105.5	804.8964279	281.6696149	655.752568	239.7397234	09-2_par	1.085714286	1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.138	80	0	0	NA	6qG2	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.624430378	sgMsh2	cell line
chr6	141532679	141532679	A	G	ENSMUST00000032362.11	1	ENSMUSG00000030235	missense	K/R	56	Slco1c1	ENSMUST00000032362.11:c.167A>G	ENSMUSP00000032362.9:p.Lys56Arg	H-2-Kb	8	6	6	FVYFARAL	FVYFAKAL	NetMHCpan	53.9	100.9	1.872	80	0.125	100.957	211.274	2.093	281	106.91	100.9	53.9	196.218522	95.00358634	226.3288934	123.2366829	09-2_par	1.228571429	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.138	80	0	0	NA	6qG2	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.624430378	sgMsh2	cell line
chr6	124908510	124908510	CG	C	ENSMUST00000032217.1	1	ENSMUSG00000030124	FS	P/X	302	Lag3	ENSMUST00000032217.1:c.906del	ENSMUSP00000032217.1:p.Val303TrpfsTer45	H-2-Kb	8	16	0	VAILPFTL	NA	NetMHC	108.05	NA	NA	83	0.06	209.178	NA	NA	NA	108.05	NA	108.8	NA	309.5565516	NA	376.4783444	09-2_par	2.057142857	2.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.07	83	0	0	NA	6qF2	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.316740047	sgMsh2	cell line
chr7	127905762	127905762	T	C	ENSMUST00000071056.13	1	ENSMUSG00000030802	missense	I/T	130	Bckdk	ENSMUST00000071056.13:c.389T>C	ENSMUSP00000070345.7:p.Ile130Thr	H-2-Kb	8	10	2	YTRAFQKL	YIRAFQKL	NetMHCpan	121.7	137.9	1.133	178	0.152	139.122	142.352	1.023	95.73	131.44	137.9	121.7	146.8047136	146.8047136	188.2521739	180.6092545	09-2_par	-0.6	-0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.157	178	0	0	NA	7qF3	chr7-105374794-145323643	4	2	2	0.94	4.253366344	NA	1	0.710402677	sgMsh2	cell line
chr7	105555462	105555462	AC	A	ENSMUST00000046983.9	1	ENSMUSG00000037049	FS	P/X	183	Smpd1	ENSMUST00000046983.9:c.551del	ENSMUSP00000042187.8:p.Pro184GlnfsTer72	H-2-Kb	8	47	0	VQIHFAAA	NA	SMMPMBEC	150.918	NA	NA	115	0.183	175.233	NA	NA	NA	165.65	NA	488.7	NA	184.8161845	NA	150.9176382	09-2_par	0.857142857	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1826	115	0	0	NA	7qE3	chr7-105374794-145323643	4	2	2	0.94	4.253366344	NA	1	0.826239037	sgMsh2	cell line
chr6	124061822	124061822	CA	C	ENSMUST00000032238.4	1	ENSMUSG00000096630	FS	A/X	785	Vmn2r26	ENSMUST00000032238.4:c.2359del	ENSMUSP00000032238.3:p.Thr787GlnfsTer21	H-2-Kb	8	24	0	CGFLLYQL	NA	SMM	137.006	NA	NA	489	0.029	151.254	NA	NA	NA	201.02	NA	139.3	NA	137.0061303	NA	163.2074578	09-2_par	1.285714286	1.285714286	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.031	489	0	0	NA	6qF2	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.140270592	sgMsh2	cell line
chr7	105555462	105555462	AC	A	ENSMUST00000046983.9	1	ENSMUSG00000037049	FS	P/X	183	Smpd1	ENSMUST00000046983.9:c.551del	ENSMUSP00000042187.8:p.Pro184GlnfsTer72	H-2-Kb	8	38	0	STWRAQTL	NA	NetMHCpan	140.5	NA	NA	115	0.183	249.349	NA	NA	NA	259.51	NA	140.5	NA	239.1883374	NA	262.2647967	09-2_par	-0.671428571	-0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1826	115	0	0	NA	7qE3	chr7-105374794-145323643	4	2	2	0.94	4.253366344	NA	1	0.826239037	sgMsh2	cell line
chr7	108714066	108714066	C	A	ENSMUST00000074730.3	NA	ENSMUSG00000056946	missense	L/M	238	Olfr512	ENSMUST00000074730.3:c.712C>A	ENSMUSP00000074291.4:p.Leu238Met	H-2-Kb	8	6	6	ILFTIMRM	ILFTILRM	NetMHCpan	74.1	112.6	1.52	300	0.167	290.124	605.685	2.088	729.71	264.21	112.6	74.1	758.1235717	462.1042896	481.6593553	316.0385059	09-2_par	1.385714286	1.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.168	300	0	0	NA	7qE3	chr7-105374794-145323643	4	2	2	0.94	4.253366344	NA	1	0.760176112	sgMsh2	cell line
chr6	124026107	124026107	A	G	ENSMUST00000032238.4	1	ENSMUSG00000096630	missense	I/V	159	Vmn2r26	ENSMUST00000032238.4:c.475A>G	ENSMUSP00000032238.3:p.Ile159Val	H-2-Kb	8	9	3	ISVQISRV	ISIQISRV	SMMPMBEC	344.937	187.387	0.543	437	0.039	418.74	190.944	0.456	128.57	355.82	194.5	487.3	252.1970487	481.6593553	187.3872337	344.9371732	09-2_par	0.471428571	0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.044	437	0	0	NA	6qF2	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.199093744	sgMsh2	cell line
chr7	106886521	106886521	G	T	ENSMUST00000213918.1	5	ENSMUSG00000109354	missense	L/I	99	Olfr706	ENSMUST00000213918.1:c.295C>A	ENSMUSP00000150075.1:p.Leu99Ile	H-2-Kb	8	11	1	IQMALALM	LQMALALM	NetMHCpan	225.8	1084.7	4.804	167	0.054	488.486	2680.818	5.488	2769.01	369.2	1084.7	225.8	3653.759857	770.4420888	2592.626764	607.7710368	09-2_par	1.642857143	2.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.06	167	0	0	NA	7qE3	chr7-105374794-145323643	4	2	2	0.94	4.253366344	NA	1	0.271491469	sgMsh2	cell line
chr7	108066532	108066532	T	C	ENSMUST00000071658.2	NA	ENSMUSG00000063120	missense	M/V	89	Olfr480	ENSMUST00000071658.2:c.265A>G	ENSMUSP00000071583.2:p.Met89Val	H-2-Kb	8	8	4	HTPVYLFL	HTPMYLFL	NetMHCpan	245.7	219.6	0.894	199	0.176	262.002	292.515	1.116	407.26	463.94	219.6	245.7	316.0385059	266.5262568	268.9923939	257.4779247	09-2_par	1.571428571	1.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.185	199	0	0	NA	7qE3	chr7-105374794-145323643	4	2	2	0.94	4.253366344	NA	1	0.837098695	sgMsh2	cell line
chr6	125980155	125980155	A	G	ENSMUST00000160496.7	1	ENSMUSG00000038115	missense	K/R	629	Ano2	ENSMUST00000160496.7:c.1886A>G	ENSMUSP00000125303.1:p.Lys629Arg	H-2-Kb	8	6	6	KAFLLRFV	KAFLLKFV	NetMHCpan	272.4	547.6	2.01	201	0.124	351.17	682.716	1.944	1229.78	480.77	547.6	272.4	681.9303192	330.1718172	683.502331	372.1688324	09-2_par	2.1	2.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.119	201	0	0	NA	6qF3	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.53845808	sgMsh2	cell line
chr7	62419972	62419972	TC	T	ENSMUST00000094340.3	NA	ENSMUSG00000070527	FS	E/X	24	Mkrn3	ENSMUST00000094340.3:c.70del	ENSMUSP00000091898.3:p.Glu24ArgfsTer36	H-2-Kb	8	19	0	LSLRLLEL	NA	NetMHCpan	293.7	NA	NA	18	0.167	477.609	NA	NA	NA	496.72	NA	293.7	NA	496.2951144	NA	458.9231861	09-2_par	0.914285714	0.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.21	18	0	0	NA	7qC	chr7-10175819-102421810	4	2	2	0.94	4.253366344	NA	1	0.950220141	sgMsh2	cell line
chr6	132856177	132856177	A	G	ENSMUST00000032315.2	NA	ENSMUSG00000030194	missense	H/R	247	Tas2r116	ENSMUST00000032315.2:c.740A>G	ENSMUSP00000032315.2:p.His247Arg	H-2-Kb	8	6	6	IFFLSRVM	IFFLSHVM	SMM	306.719	340.204	1.109	167	0.03	377.704	396.953	1.051	760.76	498.74	352.6	363.9	340.2044578	306.71852	441.3061706	391.5074224	09-2_par	1.457142857	1.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.03	167	0	0	NA	6qG1	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.135745734	sgMsh2	cell line
chr7	41837218	41837218	G	A	ENSMUST00000171671.2	5	ENSMUSG00000090383	missense	T/I	751	Vmn2r58	ENSMUST00000171671.2:c.2252C>T	ENSMUSP00000126966.1:p.Thr751Ile	H-2-Kb	8	5	7	STVAFHIV	STVAFHTV	NetMHCpan	284.8	89.9	0.316	435	0.028	432.096	152.182	0.352	142.28	577.36	89.9	284.8	162.0839455	371.3128679	188.68614	492.8786429	09-2_par	1.942857143	1.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.029	435	0	0	NA	7qB3	chr7-10175819-102421810	4	2	2	0.94	4.253366344	NA	1	0.131220877	sgMsh2	cell line
chr7	12259785	12259785	A	G	ENSMUST00000227973.1	NA	ENSMUSG00000115027	missense	F/L	299	Vmn1r81	ENSMUST00000227973.1:c.895T>C	ENSMUSP00000154529.1:p.Phe299Leu	H-2-Kb	8	7	8	IKCSFRLL	IKCSFRLF	SMMPMBEC	117.149	1471.431	12.56	149	0.034	396.665	3119.711	7.865	4771.49	668.09	4203.6	1170.3	2035.822922	125.2391179	1471.431334	117.1493815	09-2_par	0.528571429	0.628571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.035	149	0	0	NA	7qA1	chr7-10175819-102421810	4	2	2	0.94	4.253366344	NA	1	0.158370023	sgMsh2	cell line
chr7	86811337	86811337	G	A	ENSMUST00000164996.1	5	ENSMUSG00000090949	missense	V/I	624	Vmn2r77	ENSMUST00000164996.1:c.1870G>A	ENSMUSP00000129540.1:p.Val624Ile	H-2-Kb	8	6	6	ETLSYILL	ETLSYVLL	SMMPMBEC	299.737	258.071	0.861	308	0.149	438.719	380.319	0.867	864.89	988.22	444.6	532.5	316.0385059	344.9371732	258.0714726	299.7367541	09-2_par	1.871428571	1.871428571	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.152	308	0	0	NA	7qD3	chr7-10175819-102421810	4	2	2	0.94	4.253366344	NA	1	0.687778387	sgMsh2	cell line
chr6	124908510	124908510	CG	C	ENSMUST00000032217.1	1	ENSMUSG00000030124	FS	P/X	302	Lag3	ENSMUST00000032217.1:c.906del	ENSMUSP00000032217.1:p.Val303TrpfsTer45	H-2-Kb	8	24	0	RLWVWHRL	NA	SMMPMBEC	207.367	NA	NA	83	0.06	336.204	NA	NA	NA	1111.14	NA	304.5	NA	367.908651	NA	207.3671696	09-2_par	0.328571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.07	83	0	0	NA	6qF2	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.316740047	sgMsh2	cell line
chr6	141532679	141532679	A	G	ENSMUST00000032362.11	1	ENSMUSG00000030235	missense	K/R	56	Slco1c1	ENSMUST00000032362.11:c.167A>G	ENSMUSP00000032362.9:p.Lys56Arg	H-2-Kb	9	4	8	LSFVYFARA	LSFVYFAKA	NetMHC	8.07	18.23	2.259	80	0.125	41.355	63.038	1.524	18.23	8.07	19.6	12.2	162.2220929	88.94263671	106.4755765	70.50988397	09-2_par	1.085714286	1.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.138	80	0	0	NA	6qG2	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.624430378	sgMsh2	cell line
chr7	86811337	86811337	G	A	ENSMUST00000164996.1	5	ENSMUSG00000090949	missense	V/I	624	Vmn2r77	ENSMUST00000164996.1:c.1870G>A	ENSMUSP00000129540.1:p.Val624Ile	H-2-Kb	9	8	4	LSYILLTSL	LSYVLLTSL	NetMHCpan	26.5	23.3	0.879	308	0.149	55.636	50.423	0.906	24.09	28.24	23.3	26.5	76.75558746	92.92017092	84.382036	83.03286055	09-2_par	1.871428571	1.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.152	308	0	0	NA	7qD3	chr7-10175819-102421810	4	2	2	0.94	4.253366344	NA	1	0.687778387	sgMsh2	cell line
chr7	108066532	108066532	T	C	ENSMUST00000071658.2	NA	ENSMUSG00000063120	missense	M/V	89	Olfr480	ENSMUST00000071658.2:c.265A>G	ENSMUSP00000071583.2:p.Met89Val	H-2-Kb	9	10	2	PVYLFLSHL	PMYLFLSHL	SMM	27.74	12.797	0.461	199	0.176	31.825	25.891	0.814	28.38	30.85	39.4	32.8	12.79705392	27.74022632	23.40183969	47.56089297	09-2_par	1.271428571	1.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.185	199	0	0	NA	7qE3	chr7-105374794-145323643	4	2	2	0.94	4.253366344	NA	1	0.837098695	sgMsh2	cell line
chr6	132856177	132856177	A	G	ENSMUST00000032315.2	NA	ENSMUSG00000030194	missense	H/R	247	Tas2r116	ENSMUST00000032315.2:c.740A>G	ENSMUSP00000032315.2:p.His247Arg	H-2-Kb	9	4	8	YSIFFLSRV	YSIFFLSHV	NetMHC	38.4	36.68	0.955	167	0.03	95.316	101.733	1.067	36.68	38.4	43.1	42	160.3651519	148.6312054	185.033345	164.9111423	09-2_par	1.828571429	1.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.03	167	0	0	NA	6qG1	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.135745734	sgMsh2	cell line
chr6	134520435	134520435	A	C	ENSMUST00000032322.14	1	ENSMUSG00000030201	missense	L/R	203	Lrp6	ENSMUST00000032322.14:c.608T>G	ENSMUSP00000032322.8:p.Leu203Arg	H-2-Kb	9	11	1	RNFIHKSNL	LNFIHKSNL	NetMHCpan	24.8	15.1	0.609	181	0.072	96.035	60.832	0.633	39.77	43.78	15.1	24.8	87.5205423	148.2893631	81.893607	152.4930322	09-2_par	-0.042857143	-0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.083	181	0	0	NA	6qG1	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.375563198	sgMsh2	cell line
chr7	41837218	41837218	G	A	ENSMUST00000171671.2	5	ENSMUSG00000090383	missense	T/I	751	Vmn2r58	ENSMUST00000171671.2:c.2252C>T	ENSMUSP00000126966.1:p.Thr751Ile	H-2-Kb	9	11	1	IVLGYLCSL	TVLGYLCSL	NetMHCpan	42.8	80.2	1.874	435	0.028	100.986	182.433	1.807	147.97	72.52	80.2	42.8	221.8758325	129.4523683	216.8952295	130.9935766	09-2_par	1.628571429	2.442857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.029	435	0	0	NA	7qB3	chr7-10175819-102421810	4	2	2	0.94	4.253366344	NA	1	0.131220877	sgMsh2	cell line
chr6	124908510	124908510	CG	C	ENSMUST00000032217.1	1	ENSMUSG00000030124	FS	P/X	302	Lag3	ENSMUST00000032217.1:c.906del	ENSMUSP00000032217.1:p.Val303TrpfsTer45	H-2-Kb	9	17	0	AILPFTLRL	NA	NetMHCpan	45.3	NA	NA	83	0.06	185.425	NA	NA	NA	88.29	NA	45.3	NA	282.5595563	NA	326.7758854	09-2_par	1.057142857	2.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.07	83	0	0	NA	6qF2	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.316740047	sgMsh2	cell line
chr7	86230157	86230157	G	T	ENSMUST00000165771.1	5	ENSMUSG00000091239	missense	L/I	312	Vmn2r76	ENSMUST00000165771.1:c.934C>A	ENSMUSP00000127309.1:p.Leu312Ile	H-2-Kb	9	11	1	IFNSFHGTL	LFNSFHGTL	NetMHC	90.6	323.06	3.566	122	0.131	213.074	517.132	2.427	323.06	90.6	536.4	171.4	497.86317	254.7475407	565.2622723	289.2344371	09-2_par	-0.285714286	0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.133	122	0	0	NA	7qD3	chr7-10175819-102421810	4	2	2	0.94	4.253366344	NA	1	0.601806089	sgMsh2	cell line
chr6	141532679	141532679	A	G	ENSMUST00000032362.11	1	ENSMUSG00000030235	missense	K/R	56	Slco1c1	ENSMUST00000032362.11:c.167A>G	ENSMUSP00000032362.9:p.Lys56Arg	H-2-Kb	9	5	7	SFVYFARAL	SFVYFAKAL	NetMHC	90.76	210.98	2.325	80	0.125	303.576	377.92	1.245	210.98	90.76	211.2	119.5	544.6405843	487.6519891	802.1396792	782.0778752	09-2_par	1.228571429	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.138	80	0	0	NA	6qG2	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.624430378	sgMsh2	cell line
chr7	103470081	103470081	A	G	ENSMUST00000213546.2	NA	ENSMUSG00000073948	missense	Y/C	14	Olfr608	ENSMUST00000213546.2:c.41A>G	ENSMUSP00000150595.1:p.Tyr14Cys	H-2-Kb	9	7	5	ISFFCLVGI	ISFFYLVGI	NetMHC	110	28.08	0.255	193	0.047	126.1	35.43	0.281	28.08	110	11.3	114.4	52.97976163	177.4638912	42.7809082	137.8002483	09-2_par	2.885714286	2.885714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.049	193	0	0	NA	7qE3	chr7-102425657-105369630	3	2	1	0.94	4.253366344	NA	1	0.221718033	sgMsh2	cell line
chr7	41837218	41837218	G	A	ENSMUST00000171671.2	5	ENSMUSG00000090383	missense	T/I	751	Vmn2r58	ENSMUST00000171671.2:c.2252C>T	ENSMUSP00000126966.1:p.Thr751Ile	H-2-Kb	9	5	7	STVAFHIVL	STVAFHTVL	NetMHCpan	78.3	35.5	0.453	435	0.028	229.203	177.514	0.774	42.24	114.65	35.5	78.3	368.2222268	389.1436965	312.7879401	343.7557727	09-2_par	2.585714286	2.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.029	435	0	0	NA	7qB3	chr7-10175819-102421810	4	2	2	0.94	4.253366344	NA	1	0.131220877	sgMsh2	cell line
chr6	124026107	124026107	A	G	ENSMUST00000032238.4	1	ENSMUSG00000096630	missense	I/V	159	Vmn2r26	ENSMUST00000032238.4:c.475A>G	ENSMUSP00000032238.3:p.Ile159Val	H-2-Kb	9	11	1	VQISRVLSL	IQISRVLSL	NetMHCpan	144	156.8	1.089	437	0.039	273.987	360.306	1.315	261.15	217.52	156.8	144	486.5304206	330.4532291	459.4624246	346.9365057	09-2_par	1.457142857	1.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.044	437	0	0	NA	6qF2	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.199093744	sgMsh2	cell line
chr7	135152261	135152261	C	T	ENSMUST00000084488.4	5	ENSMUSG00000058325	missense	A/V	1589	Dock1	ENSMUST00000084488.4:c.4766C>T	ENSMUSP00000081531.4:p.Ala1589Val	H-2-Kb	9	11	1	VLRPFHERM	ALRPFHERM	NetMHCpan	84.2	315.4	3.746	88	0.057	423.221	1393.102	3.292	1094.79	233.74	315.4	84.2	1897.186388	638.4251688	1691.414308	612.7029904	09-2_par	-1.8	-0.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.07	88	0	0	NA	7qF3	chr7-105374794-145323643	4	2	2	0.94	4.253366344	NA	1	0.316740047	sgMsh2	cell line
chr7	12259785	12259785	A	G	ENSMUST00000227973.1	NA	ENSMUSG00000115027	missense	F/L	299	Vmn1r81	ENSMUST00000227973.1:c.895T>C	ENSMUSP00000154529.1:p.Phe299Leu	H-2-Kb	9	9	6	CSFRLLLPF	CSFRLFLPF	SMM	200.96	90.388	0.45	149	0.034	245.191	106.319	0.434	141.96	311.37	58.5	203.8	90.3878383	200.9601749	122.2503187	286.5827198	09-2_par	1.557142857	1.628571429	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.035	149	0	0	NA	7qA1	chr7-10175819-102421810	4	2	2	0.94	4.253366344	NA	1	0.158370023	sgMsh2	cell line
chr7	128682320	128682320	T	C	ENSMUST00000043138.12	1	ENSMUSG00000042105	missense	Y/H	548	Inpp5f	ENSMUST00000043138.12:c.1642T>C	ENSMUSP00000045910.6:p.Tyr548His	H-2-Kb	9	8	4	ANRHYLSRF	ANRYYLSRF	SMM	213.359	159.628	0.748	139	0.058	273.396	175.803	0.643	148.49	318.1	293.9	583.8	159.628341	213.3585248	191.9773533	228.6914879	09-2_par	-1.1	-1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.069	139	0	0	NA	7qF3	chr7-105374794-145323643	4	2	2	0.94	4.253366344	NA	1	0.312215189	sgMsh2	cell line
chr7	108317521	108317521	T	C	ENSMUST00000214605.1	2	ENSMUSG00000094612	missense	V/A	209	Olfr491	ENSMUST00000214605.1:c.626T>C	ENSMUSP00000150694.1:p.Val209Ala	H-2-Kb	9	10	2	VATVFVISV	VVTVFVISV	NetMHC	342.27	467.62	1.366	405	0.02	395.11	553.012	1.4	467.62	342.27	735.6	356.6	487.6519891	433.6206938	618.3722614	534.872168	09-2_par	2.628571429	3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.02	405	0	0	NA	7qE3	chr7-105374794-145323643	4	2	2	0.94	4.253366344	NA	1	0.090497156	sgMsh2	cell line
chr6	134484391	134484391	T	G	ENSMUST00000032322.14	1	ENSMUSG00000030201	missense	E/A	701	Lrp6	ENSMUST00000032322.14:c.2102A>C	ENSMUSP00000032322.8:p.Glu701Ala	H-2-Kb	9	4	8	SALEHVVAF	SALEHVVEF	NetMHC	346.5	552.55	1.595	156	0.141	444.167	549.223	1.237	552.55	346.5	572.2	399.4	545.8961105	515.3591605	539.8212792	488.9337312	09-2_par	1.442857143	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.134	156	0	0	NA	6qG1	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.606330947	sgMsh2	cell line
chr7	86585643	86585643	G	A	ENSMUST00000215365.1	3	ENSMUSG00000059319	missense	A/T	123	Olfr295	ENSMUST00000215365.1:c.367G>A	ENSMUSP00000150377.1:p.Ala123Thr	H-2-Kb	9	4	8	MAQDRYVTI	MAQDRYVAI	SMMPMBEC	399.255	370.894	0.929	309	0.074	423.855	403.247	0.951	327.37	419.11	435.6	428.6	454.0566075	482.0698829	370.8941642	399.2546657	09-2_par	-0.685714286	-0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.075	309	0	0	NA	7qD3	chr7-10175819-102421810	4	2	2	0.94	4.253366344	NA	1	0.339364336	sgMsh2	cell line
chr6	132856177	132856177	A	G	ENSMUST00000032315.2	NA	ENSMUSG00000030194	missense	H/R	247	Tas2r116	ENSMUST00000032315.2:c.740A>G	ENSMUSP00000032315.2:p.His247Arg	H-2-Kb	9	5	7	SIFFLSRVM	SIFFLSHVM	NetMHCpan	249.7	218.1	0.873	167	0.03	437.557	443.44	1.013	767.97	458.14	218.1	249.7	394.5572246	416.9749833	492.3228579	546.072115	09-2_par	1.457142857	1.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.03	167	0	0	NA	6qG1	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.135745734	sgMsh2	cell line
chr7	45897436	45897436	C	T	ENSMUST00000069772.15	1	ENSMUSG00000002781	missense	L/F	9	Tmem143	ENSMUST00000069772.15:c.25C>T	ENSMUSP00000070405.7:p.Leu9Phe	H-2-Kb	9	1	9	MTVARWLRF	MTVARWLRL	SMMPMBEC	346.937	200.563	0.578	50	0.12	447.198	172.436	0.386	144.31	476.98	90.6	447.6	264.9171047	446.7967444	200.5626226	346.9365057	09-2_par	0.385714286	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.137	50	0	0	NA	7qB3	chr7-10175819-102421810	4	2	2	0.94	4.253366344	NA	1	0.61990552	sgMsh2	cell line
chr7	103470081	103470081	A	G	ENSMUST00000213546.2	NA	ENSMUSG00000073948	missense	Y/C	14	Olfr608	ENSMUST00000213546.2:c.41A>G	ENSMUSP00000150595.1:p.Tyr14Cys	H-2-Kb	9	5	7	HYISFFCLV	HYISFFYLV	SMM	275.493	242.722	0.881	193	0.047	465.484	480.017	1.031	553.71	654.2	487.7	445.4	242.7224795	275.4926395	472.3348608	485.5679351	09-2_par	2.828571429	2.828571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.049	193	0	0	NA	7qE3	chr7-102425657-105369630	3	2	1	0.94	4.253366344	NA	1	0.221718033	sgMsh2	cell line
chr7	103470081	103470081	A	G	ENSMUST00000213546.2	NA	ENSMUSG00000073948	missense	Y/C	14	Olfr608	ENSMUST00000213546.2:c.41A>G	ENSMUSP00000150595.1:p.Tyr14Cys	H-2-Kb	9	4	8	HHYISFFCL	HHYISFFYL	NetMHCpan	313	148.8	0.475	193	0.047	400.617	208.973	0.522	200.12	868.01	148.8	313	217.8261422	394.5572246	274.3152803	406.6773641	09-2_par	2.042857143	2.042857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.049	193	0	0	NA	7qE3	chr7-102425657-105369630	3	2	1	0.94	4.253366344	NA	1	0.221718033	sgMsh2	cell line
chr8	105842526	105842526	T	C	ENSMUST00000034365.4	1	ENSMUSG00000031893	missense	F/L	503	Tsnaxip1	ENSMUST00000034365.4:c.1507T>C	ENSMUSP00000034365.4:p.Phe503Leu	H-2-Kb	8	8	4	MNQLYAVL	MNQFYAVL	NetMHC	23.5	46.32	1.971	113	0.062	29.097	39.143	1.345	46.32	23.5	18.5	29.7	31.96980594	28.49311953	46.316955	38.52476516	09-2_par	0.757142857	0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.074	113	0	0	NA	8qD3	chr8-92830365-129138455	4	2	2	0.94	4.253366344	NA	1	0.334839478	sgMsh2	cell line
chrX	59250947	59250947	A	AG	ENSMUST00000124402.1	2	ENSMUSG00000031137	FS	P/PX	23	Fgf13	ENSMUST00000124402.1:c.68dup	ENSMUSP00000114905.1:p.Gly24TrpfsTer28	H-2-Kb	8	19	0	VTTRFHPI	NA	NetMHCpan	45.2	NA	NA	35	0.171	60.112	NA	NA	NA	51.4	NA	45.2	NA	68.82401428	NA	71.07878574	09-2_par	-0.485714286	-0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1714	35	0	0	NA	XqA6	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	sgMsh2	cell line
chrX	66655430	66655430	A	G	ENSMUST00000166241.1	2	ENSMUSG00000036790	missense	H/R	509	Slitrk2	ENSMUST00000166241.1:c.1526A>G	ENSMUSP00000130057.1:p.His509Arg	H-2-Kb	8	5	7	RNNHFSRL	RNNHFSHL	SMM	56.2	72.734	1.294	53	0.057	71.709	76.009	1.06	75.15	82.64	111.4	111.5	72.73442335	56.20047679	76.86701211	60.77710368	09-2_par	-1.271428571	-1.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.077	53	0	0	NA	XqA7.1	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	sgMsh2	cell line
chr8	56110553	56110553	A	G	ENSMUST00000000275.8	1	ENSMUSG00000038257	missense	K/R	361	Glra3	ENSMUST00000000275.8:c.1082A>G	ENSMUSP00000000275.7:p.Lys361Arg	H-2-Kb	8	6	6	VSRQHREL	VSRQHKEL	SMM	69.621	143.794	2.065	115	0.043	100.959	250.036	2.477	322.76	105.37	1502.7	872.9	143.7937467	69.6209588	177.3127641	96.54727043	09-2_par	-2.314285714	-2.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.046	115	0	0	NA	8qB2	chr8-3154030-92679958	4	2	2	0.94	4.253366344	NA	1	0.208143459	sgMsh2	cell line
chr9	19137404	19137404	A	G	ENSMUST00000215699.1	5	ENSMUSG00000110621	missense	N/S	137	Olfr837	ENSMUST00000215699.1:c.410A>G	ENSMUSP00000149907.1:p.Asn137Ser	H-2-Kb	8	10	2	ISPFFCVI	INPFFCVI	NetMHCpan	26.4	47.5	1.799	264	0.03	140.318	276.672	1.972	346.94	156.91	47.5	26.4	248.7367755	134.5054866	304.6070846	146.1302072	09-2_par	2.057142857	2.057142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.031	264	0	0	NA	9qA2	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	1	0.140270592	sgMsh2	cell line
chr9	39258136	39258136	A	C	ENSMUST00000076903.2	NA	ENSMUSG00000063380	missense	C/G	182	Olfr945	ENSMUST00000076903.2:c.544T>G	ENSMUSP00000076169.2:p.Cys182Gly	H-2-Kb	8	6	6	INHYFGDI	INHYFCDI	NetMHCpan	102	90.9	0.891	231	0.485	276.289	313.213	1.134	217.41	182.12	90.9	102	466.380088	456.8146256	409.0157201	370.458872	09-2_par	-0.657142857	-0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.481	231	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	2	1	sgMsh2	cell line
chr7	143781688	143781688	A	T	ENSMUST00000054048.9	1	ENSMUSG00000048965	missense	L/H	26	Mrgpre	ENSMUST00000054048.9:c.77T>A	ENSMUSP00000058000.8:p.Leu26His	H-2-Kb	8	7	5	TILSHTEL	TILSLTEL	SMM	254.531	564.599	2.218	61	0.115	270.59	569.599	2.105	574.6	263.48	405.1	277.7	564.598864	254.5305993	580.4168341	288.8949831	09-2_par	0.557142857	0.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.124	61	0	0	NA	7qF5	chr7-105374794-145323643	4	2	2	0.94	4.253366344	NA	1	0.561082369	sgMsh2	cell line
chr8	105878842	105878842	T	C	ENSMUST00000008594.8	1	ENSMUSG00000008450	missense	F/S	103	Nutf2	ENSMUST00000008594.8:c.308T>C	ENSMUSP00000008594.7:p.Phe103Ser	H-2-Kb	8	5	7	MGFHQMSL	MGFHQMFL	NetMHCpan	61.8	73.9	1.196	69	0.116	150.906	134.413	0.891	345.7	271.66	73.9	61.8	105.6185011	124.0909187	163.2074578	177.7215122	09-2_par	0.085714286	0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.129	69	0	0	NA	8qD3	chr8-92830365-129138455	4	2	2	0.94	4.253366344	NA	1	0.583706658	sgMsh2	cell line
chr9	54628565	54628565	A	G	ENSMUST00000138315.1	3	ENSMUSG00000032281	missense	V/A	51	Acsbg1	ENSMUST00000138315.1:c.152T>C	ENSMUSP00000118133.1:p.Val51Ala	H-2-Kb	8	5	7	CAWNLSAL	CAWNLSVL	NetMHCpan	288.1	607.2	2.108	94	0.043	380.756	906.753	2.381	1552.12	410.97	607.2	288.1	825.5435717	350.5419514	987.9614526	439.2785529	09-2_par	0.857142857	0.857142857	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.057	94	0	0	NA	9qA5.3	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	1	0.257916895	sgMsh2	cell line
chr9	38367998	38367998	T	G	ENSMUST00000052085.1	NA	ENSMUSG00000049864	missense	C/G	151	Olfr250	ENSMUST00000052085.1:c.451T>G	ENSMUSP00000051631.1:p.Cys151Gly	H-2-Kb	8	6	6	MSPRAGSL	MSPRACSL	SMM	303.907	310.27	1.021	145	0.048	422.829	397.285	0.94	393.02	481.96	504	591	310.2701531	303.9065077	401.5503419	363.6972355	09-2_par	-0.357142857	-0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.056	145	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	1	0.253392037	sgMsh2	cell line
chr9	96297705	96297705	G	GA	ENSMUST00000165768.3	1	ENSMUSG00000032411	FS	E/EX	140	Tfdp2	ENSMUST00000165768.3:c.426dup	ENSMUSP00000128260.2:p.Glu143ArgfsTer47	H-2-Kb	9	20	0	PAYQFCSGM	NA	NetMHC	85.15	NA	NA	114	0.123	106.96	NA	NA	NA	85.15	NA	165.8	NA	88.53398242	NA	125.3862749	09-2_par	0.171428571	0.171428571	FALSE	FALSE	FALSE	1	FALSE	0	Strelka2;Vardict	2	0.1228	114	0	0	NA	9qE3.3	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	1	0.555652539	sgMsh2	cell line
chr8	105842526	105842526	T	C	ENSMUST00000034365.4	1	ENSMUSG00000031893	missense	F/L	503	Tsnaxip1	ENSMUST00000034365.4:c.1507T>C	ENSMUSP00000034365.4:p.Phe503Leu	H-2-Kb	9	7	5	IMNQLYAVL	IMNQFYAVL	NetMHCpan	84.5	13.7	0.162	113	0.062	96.352	21.513	0.223	11.77	97.15	13.7	84.5	33.04532291	121.3696222	29.32580889	95.55424822	09-2_par	0.757142857	0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.074	113	0	0	NA	8qD3	chr8-92830365-129138455	4	2	2	0.94	4.253366344	NA	1	0.334839478	sgMsh2	cell line
chr8	123911799	123911799	G	A	ENSMUST00000044795.7	1	ENSMUSG00000039509	missense	H/Y	931	Nup133	ENSMUST00000044795.7:c.2791C>T	ENSMUSP00000048084.7:p.His931Tyr	H-2-Kb	9	9	3	QAYEHLSWL	QAHEHLSWL	SMM	44.68	254.162	5.689	123	0.065	93.553	891.892	9.534	1375.23	117.18	2542.6	111.9	254.1616376	44.67967444	408.5545015	75.20556875	09-2_par	-0.3	-0.3	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.059	123	0	0	NA	8qE2	chr8-92830365-129138455	4	2	2	0.94	4.253366344	NA	1	0.266966611	sgMsh2	cell line
chrX	86747655	86747655	G	A	ENSMUST00000113966.7	5	ENSMUSG00000052372	missense	P/S	560	Il1rapl1	ENSMUST00000113966.7:c.1678C>T	ENSMUSP00000109599.1:p.Pro560Ser	H-2-Kb	9	10	2	MSFKRIEPI	MPFKRIEPI	NetMHCpan	58.3	2180.6	37.403	42	0.381	177.366	2262.711	12.757	4631.31	173.91	2180.6	58.3	2344.822647	233.4049166	1946.480243	180.8214719	09-2_par	-0.242857143	-0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.395	42	0	0	NA	XqC1	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	sgMsh2	cell line
chr8	105878842	105878842	T	C	ENSMUST00000008594.8	1	ENSMUSG00000008450	missense	F/S	103	Nutf2	ENSMUST00000008594.8:c.308T>C	ENSMUSP00000008594.7:p.Phe103Ser	H-2-Kb	9	4	8	IMGFHQMSL	IMGFHQMFL	SMMPMBEC	166.437	225.554	1.355	69	0.116	175.497	253.816	1.446	305.48	177.57	275.3	221.2	232.3325184	173.4243199	225.553723	166.4370463	09-2_par	0.085714286	0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.129	69	0	0	NA	8qD3	chr8-92830365-129138455	4	2	2	0.94	4.253366344	NA	1	0.583706658	sgMsh2	cell line
chr8	105878842	105878842	T	C	ENSMUST00000008594.8	1	ENSMUSG00000008450	missense	F/S	103	Nutf2	ENSMUST00000008594.8:c.308T>C	ENSMUSP00000008594.7:p.Phe103Ser	H-2-Kb	9	5	7	MGFHQMSLL	MGFHQMFLL	NetMHCpan	61.9	85	1.373	69	0.116	289.966	372.137	1.283	284.96	204	85	61.9	459.3143352	375.9326101	492.3228579	387.4806325	09-2_par	0.685714286	0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.129	69	0	0	NA	8qD3	chr8-92830365-129138455	4	2	2	0.94	4.253366344	NA	1	0.583706658	sgMsh2	cell line
chr9	64911707	64911707	A	C	ENSMUST00000038890.5	5	ENSMUSG00000053641	missense	I/L	1715	Dennd4a	ENSMUST00000038890.5:c.5143A>C	ENSMUSP00000037915.5:p.Ile1715Leu	H-2-Kb	9	6	6	SKYVLLQML	SKYVLIQML	NetMHC	205.75	333.38	1.62	108	0.046	293.785	445.413	1.516	333.38	205.75	921.4	678.2	401.8925911	252.4120012	488.9337312	335.1583163	09-2_par	1.814285714	1.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.057	108	0	0	NA	9qC	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	1	0.257916895	sgMsh2	cell line
chr9	19137404	19137404	A	G	ENSMUST00000215699.1	5	ENSMUSG00000110621	missense	N/S	137	Olfr837	ENSMUST00000215699.1:c.410A>G	ENSMUSP00000149907.1:p.Asn137Ser	H-2-Kb	9	10	2	ISPFFCVIV	INPFFCVIV	NetMHCpan	104.6	153.7	1.469	264	0.03	277.6	328.91	1.185	280.03	215.38	153.7	104.6	384.6892055	361.5014137	377.7896015	339.8208329	09-2_par	2.771428571	2.771428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.031	264	0	0	NA	9qA2	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	1	0.140270592	sgMsh2	cell line
chr9	39258136	39258136	A	C	ENSMUST00000076903.2	NA	ENSMUSG00000063380	missense	C/G	182	Olfr945	ENSMUST00000076903.2:c.544T>G	ENSMUSP00000076169.2:p.Cys182Gly	H-2-Kb	9	5	7	VINHYFGDI	VINHYFCDI	NetMHC	248.12	402.57	1.622	231	0.485	313.678	336.411	1.072	402.57	248.12	262.7	378.9	382.9217191	379.4110717	289.9011913	248.4562923	09-2_par	-0.657142857	0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.481	231	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	2	1	sgMsh2	cell line
chr9	38848498	38848498	T	G	ENSMUST00000217350.1	5	ENSMUSG00000062103	missense	L/R	128	Olfr924	ENSMUST00000217350.1:c.383T>G	ENSMUSP00000149849.1:p.Leu128Arg	H-2-Kb	9	7	5	CSPLRYNIV	CSPLLYNIV	SMM	190.594	472.183	2.477	262	0.023	296.248	826.235	2.789	783.01	267.97	964.9	647.4	472.1826226	190.5943402	869.4607871	324.526376	09-2_par	0.228571429	0.228571429	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.027	262	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	1	0.122171161	sgMsh2	cell line
chr9	39258136	39258136	A	C	ENSMUST00000076903.2	NA	ENSMUSG00000063380	missense	C/G	182	Olfr945	ENSMUST00000076903.2:c.544T>G	ENSMUSP00000076169.2:p.Cys182Gly	H-2-Kb	9	6	6	INHYFGDIL	INHYFCDIL	NetMHCpan	249.4	114.5	0.459	231	0.485	350.747	161.261	0.46	107.57	280.66	114.5	249.4	208.0223508	420.8332054	225.553723	456.2995075	09-2_par	0.385714286	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.481	231	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	2	1	sgMsh2	cell line
chrX	9849913	9849913	T	C	ENSMUST00000057113.2	NA	ENSMUSG00000048994	missense	S/P	55	H2al3	ENSMUST00000057113.2:c.163T>C	ENSMUSP00000052025.1:p.Ser55Pro	H-2-Kb	9	6	6	LNYVTPSIL	LNYVTSSIL	SMM	217.325	118.334	0.545	97	0.103	286.985	138.425	0.482	151.65	320.37	125.2	253.6	118.334124	217.325156	242.8007366	383.9281887	09-2_par	1.157142857	1.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.113	97	0	0	NA	XqA1.1	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	sgMsh2	cell line
chr8	56110553	56110553	A	G	ENSMUST00000000275.8	1	ENSMUSG00000038257	missense	K/R	361	Glra3	ENSMUST00000000275.8:c.1082A>G	ENSMUSP00000000275.7:p.Lys361Arg	H-2-Kb	9	6	6	VSRQHRELL	VSRQHKELL	SMM	223.414	253.577	1.135	115	0.043	294.719	447.137	1.517	629.88	360.22	1230.8	842.1	253.577082	223.4138023	264.3930288	229.2186762	09-2_par	-1.657142857	-1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.046	115	0	0	NA	8qB2	chr8-3154030-92679958	4	2	2	0.94	4.253366344	NA	1	0.208143459	sgMsh2	cell line
chr9	59324811	59324811	A	G	ENSMUST00000026265.7	1	ENSMUSG00000025235	missense	V/A	362	Bbs4	ENSMUST00000026265.7:c.1085T>C	ENSMUSP00000026265.6:p.Val362Ala	H-2-Kb	9	8	4	RAYAEAVRL	RAYVEAVRL	NetMHCpan	175.4	120.3	0.686	99	0.111	497.9	316.494	0.636	232.02	361.77	120.3	175.4	400.9682638	634.0302809	528.7495369	724.853099	09-2_par	0.328571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.103	99	0	0	NA	9qB	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	1	0.466060355	sgMsh2	cell line
chr8	105842526	105842526	T	C	ENSMUST00000034365.4	1	ENSMUSG00000031893	missense	F/L	503	Tsnaxip1	ENSMUST00000034365.4:c.1507T>C	ENSMUSP00000034365.4:p.Phe503Leu	H-2-Kb	9	8	4	MNQLYAVLM	MNQFYAVLM	NetMHCpan	308.2	218.5	0.709	113	0.062	491.947	567.121	1.153	489.91	383.95	218.5	308.2	644.3324442	599.9430132	729.8775406	767.8033453	09-2_par	1.528571429	1.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.074	113	0	0	NA	8qD3	chr8-92830365-129138455	4	2	2	0.94	4.253366344	NA	1	0.334839478	sgMsh2	cell line
chr9	107525389	107525389	A	G	ENSMUST00000168532.7	1	ENSMUSG00000010066	missense	K/R	859	Cacna2d2	ENSMUST00000168532.7:c.2576A>G	ENSMUSP00000132512.1:p.Lys859Arg	H-2-Kb	9	5	7	AWAEKFRVL	AWAEKFKVL	SMM	295.196	329.693	1.117	139	0.036	458.245	705.886	1.54	965.86	481.73	1445.1	902.6	329.6932077	295.1956816	445.9128626	434.7604204	09-2_par	0.1	0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.039	139	0	0	NA	9qF1	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	1	0.176469455	sgMsh2	cell line
chrX	101288428	101288428	TA	T	ENSMUST00000087948.10	1	ENSMUSG00000079487	FS	L/X	1445	Med12	ENSMUST00000087948.10:c.4338del	ENSMUSP00000085260.4:p.Ala1447LeufsTer31	H-2-Kb	8	22	0	STWALLPV	NA	SMMPMBEC	272.734	NA	NA	51	0.078	285.923	NA	NA	NA	434.34	NA	293.4	NA	278.4453695	NA	272.7344509	09-2_par	1.485714286	1.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0784	51	0	0	NA	XqD	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	sgMsh2	cell line
chrX	101673545	101673545	GA	G	ENSMUST00000044475.4	1	ENSMUSG00000034160	FS	K/X	757	Ogt	ENSMUST00000044475.4:c.2271del	ENSMUSP00000045409.4:p.Lys757AsnfsTer23	H-2-Kb	9	22	0	VTQLLICPL	NA	NetMHCpan	324.4	NA	NA	84	0.369	478.008	NA	NA	NA	401.25	NA	324.4	NA	554.7662088	NA	602.9065471	09-2_par	1.9	2.085714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.37	84	0	0	NA	XqD	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	sgMsh2	cell line
chr2	87071275	87071275	A	T	ENSMUST00000214049.1	5	ENSMUSG00000075163	missense	N/K	286	Olfr1107	ENSMUST00000214049.1:c.858T>A	ENSMUSP00000150135.1:p.Asn286Lys	H-2-Kb	8	6	6	VIPMLKPL	VIPMLNPL	NetMHC	73.31	38.51	0.525	172	0.11	188.474	131.561	0.698	38.51	73.31	125.8	178	137.3219621	213.1768301	152.3140619	198.9481935	13-1_par	0.985714286	1.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.115	172	0	0	NA	2qD	chr2-18997554-181807525	3	2	1	0.9	2.501351863	NA	1	0.319617183	sgTom	cell line
chr10	127515430	127515430	G	C	ENSMUST00000035735.10	1	ENSMUSG00000040280	missense	G/A	30	Ndufa4l2	ENSMUST00000035735.10:c.89G>C	ENSMUSP00000042185.9:p.Gly30Ala	H-2-Kb	8	5	7	IGFICLAM	IGFICLGM	NetMHCpan	131.8	100.6	0.763	122	0.09	182.991	202.318	1.106	188.99	187.85	100.6	131.8	256.8857419	193.5263029	215.6453014	178.1312026	13-1_par	2.414285714	2.785714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.088	122	0	0	NA	10qD3	chr10-3120209-129526639	2	1	1	0.9	2.501351863	NA	1	0.244576627	sgTom	cell line
chr2	89282773	89282773	T	C	ENSMUST00000213883.1	5	ENSMUSG00000075095	missense	D/G	120	Olfr1229	ENSMUST00000213883.1:c.359A>G	ENSMUSP00000150537.1:p.Asp120Gly	H-2-Kb	9	8	4	MAYGRYVAI	MAYDRYVAI	NetMHCpan	15.9	14.4	0.906	279	0.093	31.499	30.259	0.961	27.08	30.99	14.4	15.9	39.27443988	36.82222268	33.43874735	32.00737072	13-1_par	0.428571429	0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.092	279	0	0	NA	2qE1	chr2-18997554-181807525	3	2	1	0.9	2.501351863	NA	1	0.255693746	sgTom	cell line
chr2	111564614	111564614	C	T	ENSMUST00000217772.1	5	ENSMUSG00000108919	missense	V/I	277	Olfr1295	ENSMUST00000217772.1:c.829G>A	ENSMUSP00000151314.1:p.Val277Ile	H-2-Kb	9	7	5	VFYSIITPL	VFYSVITPL	NetMHCpan	46.3	51.4	1.11	186	0.113	67.492	77.076	1.142	64.18	62.02	51.4	46.3	89.97254391	72.96422938	118.3722765	98.45777112	13-1_par	1.2	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.114	186	0	0	NA	2qE3	chr2-18997554-181807525	3	2	1	0.9	2.501351863	NA	1	0.316837903	sgTom	cell line
chr9	38219191	38219191	T	C	ENSMUST00000093866.2	NA	ENSMUSG00000070311	missense	Y/H	123	Olfr894	ENSMUST00000093866.2:c.367T>C	ENSMUSP00000091389.2:p.Tyr123His	H-2-Kb	9	9	3	MAHDRYVAI	MAYDRYVAI	SMMPMBEC	181.656	33.439	0.184	185	0.07	201.4	30.259	0.15	27.08	200.2	14.4	202.6	39.27443988	223.4138023	33.43874735	181.6561058	13-1_par	-0.285714286	-0.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.073	185	0	0	NA	9qA5.1	chr9-3190647-124127055	2	1	1	0.9	2.501351863	NA	1	0.202887429	sgTom	cell line
chr3	59329710	59329710	T	G	ENSMUST00000039419.11	5	ENSMUSG00000036334	missense	I/L	1017	Igsf10	ENSMUST00000039419.11:c.3049A>C	ENSMUSP00000037246.6:p.Ile1017Leu	H-2-Kb	9	11	1	LSPYRTPVL	ISPYRTPVL	SMMPMBEC	420.001	214.907	0.512	145	0.097	445.278	215.998	0.485	217.09	867.76	121	436.5	232.3325184	454.0566075	214.9067221	420.0006862	13-1_par	-0.242857143	-0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.1	145	0	0	NA	3qD	chr3-10012637-159913826	3	2	1	0.9	2.501351863	NA	1	0.277927985	sgTom	cell line
chrM	3336	3336	G	A	ENSMUST00000082392.1	NA	ENSMUSG00000064341	missense	A/T	196	mt-Nd1	ENSMUST00000082392.1:c.586G>A	ENSMUSP00000080991.2:p.Ala196Thr	H-2-Db	9	5	7	LAETNRTPF	LAETNRAPF	SMMPMBEC	132.914	168.877	1.271	762	0.209	280.509	635.308	2.265	1241.41	418.91	1074	848.4	196.6165177	142.1084819	168.8768035	132.9137772	19-1_par	-1.671428571	-1.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.21	762	0	0	NA	.	NA	NA	NA	NA	0.9	5.402097117	RARE KARYOTYPE	NA	NA	sgTom	cell line
chr6	43116465	43116465	C	T	ENSMUST00000213649.1	3	ENSMUSG00000094669	missense	S/F	241	Olfr441	ENSMUST00000213649.1:c.722C>T	ENSMUSP00000150572.1:p.Ser241Phe	H-2-Kb	8	7	5	FSTCFSHL	FSTCSSHL	NetMHC	24.68	3147.7	127.541	317	0.205	50.554	2090.074	41.343	3147.7	24.68	2856.6	48.9	992.5216755	52.20835386	1323.548926	61.05763804	19-1_par	0.514285714	0.514285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.204	317	0	0	NA	6qB2.1	chr6-3373003-148425959	6	6	0	0.9	5.402097117	RARE KARYOTYPE	1	1	sgTom	cell line
chr7	104022127	104022127	A	T	ENSMUST00000218535.1	5	ENSMUSG00000066262	missense	F/I	64	Olfr640	ENSMUST00000218535.1:c.190T>A	ENSMUSP00000151356.1:p.Phe64Ile	H-2-Kb	8	8	4	MYYILSML	MYYFLSML	NetMHC	87.96	94.79	1.078	268	0.56	119.082	114.031	0.958	94.79	87.96	38.9	94.7	133.2723329	143.4630303	160.228586	168.1666993	19-1_par	1.514285714	1.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.564	268	0	0	NA	7qE3	chr7-8367627-104249043	5	3	2	0.9	5.402097117	RARE KARYOTYPE	3	1	sgTom	cell line
chr11	9290998	9290998	A	C	ENSMUST00000042740.12	5	ENSMUSG00000004668	missense	N/H	954	Abca13	ENSMUST00000042740.12:c.2860A>C	ENSMUSP00000040465.6:p.Asn954His	H-2-Kb	8	5	7	LTHVYIHV	LTHVYINV	NetMHC	148.75	78.03	0.525	228	0.579	183.934	121.569	0.661	78.03	148.75	112.6	158.1	157.666708	287.5676312	130.5389154	209.7683683	19-1_par	0.642857143	0.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.57	228	0	0	NA	11qA1	chr11-3133133-69579350	5	3	2	0.9	5.402097117	RARE KARYOTYPE	3	1	sgTom	cell line
chr3	73049824	73049824	G	C	ENSMUST00000192477.1	1	ENSMUSG00000048304	missense	N/K	538	Slitrk3	ENSMUST00000192477.1:c.1614C>G	ENSMUSP00000141236.1:p.Asn538Lys	H-2-Kb	8	11	1	KYFLYLPV	NYFLYLPV	NetMHCpan	64.9	154.6	2.382	78	0.09	96.447	284.424	2.949	539.74	170.54	154.6	64.9	293.5891489	97.89037676	275.2580317	95.00358634	19-1_par	1.485714286	1.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.111	78	0	0	NA	3qE3	chr3-10012637-159913826	6	3	3	0.9	5.402097117	RARE KARYOTYPE	1	0.666258644	sgTom	cell line
chr13	63540765	63540765	C	T	ENSMUST00000021921.10	1	ENSMUSG00000021466	missense	V/I	460	Ptch1	ENSMUST00000021921.10:c.1378G>A	ENSMUSP00000021921.5:p.Val460Ile	H-2-Kb	8	9	3	AGILLVAL	AGVLLVAL	SMMPMBEC	391.507	720.676	1.841	52	0.173	473.553	919.764	1.942	1420.9	625.88	1047.5	532.4	792.027024	414.7056956	720.6759014	391.5074224	19-1_par	3.071428571	3.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.214	52	0	0	NA	13qB3	chr13-3556297-119495179	5	3	2	0.9	5.402097117	RARE KARYOTYPE	1	1	sgTom	cell line
chr7	104022127	104022127	A	T	ENSMUST00000218535.1	5	ENSMUSG00000066262	missense	F/I	64	Olfr640	ENSMUST00000218535.1:c.190T>A	ENSMUSP00000151356.1:p.Phe64Ile	H-2-Kb	9	7	5	PMYYILSML	PMYYFLSML	SMM	89.559	14.425	0.161	268	0.56	293.978	37.213	0.127	49.06	452.36	79.3	990.9	14.42480663	89.55915762	25.36588388	135.5969747	19-1_par	1.514285714	1.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.564	268	0	0	NA	7qE3	chr7-8367627-104249043	5	3	2	0.9	5.402097117	RARE KARYOTYPE	3	1	sgTom	cell line
chr3	73049824	73049824	G	C	ENSMUST00000192477.1	1	ENSMUSG00000048304	missense	N/K	538	Slitrk3	ENSMUST00000192477.1:c.1614C>G	ENSMUSP00000141236.1:p.Asn538Lys	H-2-Kb	9	10	2	KKYFLYLPV	KNYFLYLPV	NetMHCpan	238.9	14.1	0.059	78	0.09	242.762	50.428	0.208	49.32	573.24	14.1	238.9	51.53591605	242.1642333	55.11248581	243.3604501	19-1_par	1.485714286	1.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.111	78	0	0	NA	3qE3	chr3-10012637-159913826	6	3	3	0.9	5.402097117	RARE KARYOTYPE	1	0.666258644	sgTom	cell line
chr17	37590345	37590345	T	C	ENSMUST00000216249.1	5	ENSMUSG00000062629	missense	M/V	3	Olfr114	ENSMUST00000216249.1:c.7A>G	ENSMUSP00000149735.1:p.Met3Val	H-2-Db	9	1	3	MIVENITTM	MIMENITTM	NetMHC	64.57	40.87	0.633	224	0.054	125.054	73.596	0.589	40.87	64.57	26.8	76.1	106.3212319	182.2300524	108.2854237	174.0083144	20-1_par	0.314285714	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.061	224	0	0	NA	17qB1	chr17-8169318-94740433	5	3	2	0.99	4.504082356	RARE KARYOTYPE;POOR GOF (79.2%)	1	0.277524266	sgTom	cell line
chr11	97711127	97711127	G	GTCACTGCT	ENSMUST00000103147.4	1	ENSMUSG00000069744	FS	V/VTAX	108	Psmb3	ENSMUST00000103147.4:c.325_326insCTGCTTCA	ENSMUSP00000099436.4:p.Ile109ThrfsTer27	H-2-Kb	8	23	0	SSPSFALW	NA	NetMHC	69.88	NA	NA	230	0.043	157.578	NA	NA	NA	69.88	NA	1050.4	NA	106.3506136	NA	208.8045702	20-1_par	0.614285714	0.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.058	230	0	0	NA	11qD	chr11-83346348-121956668	4	3	1	0.99	4.504082356	RARE KARYOTYPE;POOR GOF (79.2%)	1	0.263875532	sgTom	cell line
chr2	87308785	87308785	A	T	ENSMUST00000216396.2	5	ENSMUSG00000083706	missense	T/S	19	Olfr1118	ENSMUST00000216396.2:c.55A>T	ENSMUSP00000150394.2:p.Thr19Ser	H-2-Kb	8	11	1	SLMEFILL	TLMEFILL	NetMHCpan	47.8	80.3	1.68	142	0.458	138.454	253.684	1.832	311.58	111.81	80.3	47.8	290.2284617	195.3169797	217.1400833	165.0973111	20-1_par	2.442857143	2.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.444	142	0	0	NA	2qD	chr2-3197272-181807525	5	3	2	0.99	4.504082356	RARE KARYOTYPE;POOR GOF (79.2%)	2	1	sgTom	cell line
chr2	87308785	87308785	A	T	ENSMUST00000216396.2	5	ENSMUSG00000083706	missense	T/S	19	Olfr1118	ENSMUST00000216396.2:c.55A>T	ENSMUSP00000150394.2:p.Thr19Ser	H-2-Kb	8	10	2	SSLMEFIL	STLMEFIL	NetMHC	231.96	727.43	3.136	142	0.458	439.149	882.169	2.009	727.43	231.96	456.5	257.8	1293.421274	779.3633877	1036.907462	620.4974485	20-1_par	1.785714286	1.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.444	142	0	0	NA	2qD	chr2-3197272-181807525	5	3	2	0.99	4.504082356	RARE KARYOTYPE;POOR GOF (79.2%)	2	1	sgTom	cell line
chr11	97711127	97711127	G	GTCACTGCT	ENSMUST00000103147.4	1	ENSMUSG00000069744	FS	V/VTAX	108	Psmb3	ENSMUST00000103147.4:c.325_326insCTGCTTCA	ENSMUSP00000099436.4:p.Ile109ThrfsTer27	H-2-Kb	8	26	0	SFALWTSL	NA	NetMHCpan	232.7	NA	NA	230	0.043	422.35	NA	NA	NA	621.23	NA	232.7	NA	382.5956254	NA	462.1042896	20-1_par	1.4	1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.058	230	0	0	NA	11qD	chr11-83346348-121956668	4	3	1	0.99	4.504082356	RARE KARYOTYPE;POOR GOF (79.2%)	1	0.263875532	sgTom	cell line
chr17	37590267	37590267	C	A	ENSMUST00000216249.1	5	ENSMUSG00000062629	missense	V/L	29	Olfr114	ENSMUST00000216249.1:c.85G>T	ENSMUSP00000149735.1:p.Val29Leu	H-2-Kb	8	11	1	LLFLVTYL	VLFLVTYL	SMMPMBEC	265.302	63.788	0.24	567	0.056	416.53	68.363	0.164	79.94	743.89	71	500.6	65.72642338	332.4604589	63.788149	265.3016799	20-1_par	2.342857143	2.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.047	567	0	0	NA	17qB1	chr17-8169318-94740433	5	3	2	0.99	4.504082356	RARE KARYOTYPE;POOR GOF (79.2%)	1	0.213830172	sgTom	cell line
chr2	87308785	87308785	A	T	ENSMUST00000216396.2	5	ENSMUSG00000083706	missense	T/S	19	Olfr1118	ENSMUST00000216396.2:c.55A>T	ENSMUSP00000150394.2:p.Thr19Ser	H-2-Kb	9	10	2	SSLMEFILL	STLMEFILL	NetMHC	41.04	111.49	2.717	142	0.458	103.316	179.933	1.742	111.49	41.04	108.2	58	248.3762124	148.6312054	285.2659918	175.4890407	20-1_par	2.442857143	2.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.444	142	0	0	NA	2qD	chr2-3197272-181807525	5	3	2	0.99	4.504082356	RARE KARYOTYPE;POOR GOF (79.2%)	2	1	sgTom	cell line
chr11	97711127	97711127	G	GTCACTGCT	ENSMUST00000103147.4	1	ENSMUSG00000069744	FS	V/VTAX	108	Psmb3	ENSMUST00000103147.4:c.325_326insCTGCTTCA	ENSMUSP00000099436.4:p.Ile109ThrfsTer27	H-2-Kb	9	25	0	PSFALWTSL	NA	SMMPMBEC	214.907	NA	NA	230	0.043	347.757	NA	NA	NA	517.4	NA	472.1	NA	223.4138023	NA	214.9067221	20-1_par	1.4	1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.058	230	0	0	NA	11qD	chr11-83346348-121956668	4	3	1	0.99	4.504082356	RARE KARYOTYPE;POOR GOF (79.2%)	1	0.263875532	sgTom	cell line
chr1	135108638	135108638	CG	C	ENSMUST00000183317.7	1	ENSMUSG00000097993	FS	R/X	1702	Ptprv	ENSMUST00000183317.7:c.5104del	ENSMUSP00000158886.1:p.Arg1702GlufsTer?	H-2-Db	9	3	9	SALRNRLPE	SALRNRLPR	SMMPMBEC	48.817	183.472	3.758	196	0.046	199.532	755.419	3.786	1245.61	347.94	9248.4	2811	265.2283845	51.12343188	183.4720865	48.81687784	22-1_par	-1.428571429	-0.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.058	196	0	0	NA	1qE4	chr1-85662188-171504463	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.252952237	sgMsh2	cell line
chr1	135108638	135108638	CG	C	ENSMUST00000183317.7	1	ENSMUSG00000097993	FS	R/X	1702	Ptprv	ENSMUST00000183317.7:c.5104del	ENSMUSP00000158886.1:p.Arg1702GlufsTer?	H-2-Db	10	3	9	SALRNRLPEL	SALRNRLPRA	NetMHC	15.43	110.7	7.174	196	0.046	369.427	1558.607	4.219	110.7	15.43	717	30.5	2400.214196	708.3534281	2771.213589	842.6941907	22-1_par	-1.428571429	-0.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.058	196	0	0	NA	1qE4	chr1-85662188-171504463	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.252952237	sgMsh2	cell line
chr1	37261746	37261746	G	T	ENSMUST00000195272.5	5	ENSMUSG00000026114	missense	D/Y	554	Cnga3	ENSMUST00000195272.5:c.1660G>T	ENSMUSP00000142175.1:p.Asp554Tyr	H-2-Kb	8	5	7	RSIGYSYL	RSIGYSDL	NetMHC	11.74	77.79	6.626	152	0.039	30.53	143.466	4.699	77.79	11.74	160.5	22	144.4574685	39.06069803	142.4754378	39.24099402	22-1_par	0.528571429	0.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.041	152	0	0	NA	1qB	chr1-3216742-85113944	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.178811064	sgMsh2	cell line
chr10	78984249	78984249	T	C	ENSMUST00000058991.4	2	ENSMUSG00000046493	missense	V/A	153	Olfr1352	ENSMUST00000058991.4:c.458T>C	ENSMUSP00000054355.3:p.Val153Ala	H-2-Kb	8	9	3	VSALHALL	VSVLHALL	NetMHC	15.65	6.56	0.419	275	0.047	28.412	16.599	0.584	6.56	15.65	13.8	28	19.39724271	28.82305431	20.68902384	40.15503419	22-1_par	1.571428571	1.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.041	275	0	0	NA	10qC1	chr10-33471244-129526639	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.178811064	sgMsh2	cell line
chr1	78817772	78817772	T	C	ENSMUST00000057262.7	1	ENSMUSG00000047330	missense	Y/H	46	Kcne4	ENSMUST00000057262.7:c.136T>C	ENSMUSP00000055415.6:p.Tyr46His	H-2-Kb	8	6	6	VVMSFHGV	VVMSFYGV	NetMHC	18.83	10.95	0.582	102	0.098	44.92	33.218	0.739	10.95	18.83	16	23.2	59.94321055	82.55435717	50.43592613	66.64076901	22-1_par	1.242857143	1.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.092	102	0	0	NA	1qC4	chr1-3216742-85113944	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.401234583	sgMsh2	cell line
chr1	139469415	139469415	T	C	ENSMUST00000053364.11	1	ENSMUSG00000033952	missense	L/S	915	Aspm	ENSMUST00000053364.11:c.2744T>C	ENSMUSP00000059159.8:p.Leu915Ser	H-2-Kb	8	6	6	RHLSFSGL	RHLSFLGL	NetMHC	35.76	128.55	3.595	191	0.063	91.485	150.007	1.64	128.55	35.76	231.3	200.4	140.5206015	86.64430052	159.4924025	96.32521787	22-1_par	0.742857143	0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.054	191	0	0	NA	1qE4	chr1-85662188-171504463	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.235507255	sgMsh2	cell line
chr11	4918179	4918179	GA	G	ENSMUST00000038237.7	1	ENSMUSG00000034274	FS	K/X	411	Thoc5	ENSMUST00000038237.7:c.1237del	ENSMUSP00000045580.1:p.Thr413LeufsTer16	H-2-Kb	8	18	0	ISISLTKL	NA	NetMHCpan	47.4	NA	NA	149	0.047	70.563	NA	NA	NA	49.77	NA	47.4	NA	107.3346637	NA	91.35661511	22-1_par	0.842857143	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.047	149	0	0	NA	11qA1	chr11-3133205-69578588	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.204978537	sgMsh2	cell line
chr1	55152729	55152729	A	C	ENSMUST00000162364.7	1	ENSMUSG00000025979	missense	M/L	201	Mob4	ENSMUST00000162364.7:c.601A>C	ENSMUSP00000125415.1:p.Met201Leu	H-2-Kb	8	4	8	FVMKYNLL	FVMKYNLM	NetMHCpan	46.1	114.7	2.488	190	0.032	112.404	426.817	3.797	209.85	60.47	114.7	46.1	801.1982647	199.8664966	643.7837347	164.3387578	22-1_par	0.714285714	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.046	190	0	0	NA	1qC1.2	chr1-3216742-85113944	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.200617291	sgMsh2	cell line
chr10	129269164	129269164	T	G	ENSMUST00000204573.2	5	ENSMUSG00000062914	missense	K/T	53	Olfr777	ENSMUST00000204573.2:c.158A>C	ENSMUSP00000145475.1:p.Lys53Thr	H-2-Kb	8	11	1	TTAMYFFL	KTAMYFFL	NetMHCpan	57.4	52.8	0.92	327	0.024	74.099	108.042	1.458	247.97	135.96	52.8	57.4	103.6907462	72.73442335	112.3931906	75.46403103	22-1_par	1.585714286	1.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.033	327	0	0	NA	10qD3	chr10-33471244-129526639	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.1439211	sgMsh2	cell line
chr1	37261746	37261746	G	T	ENSMUST00000195272.5	5	ENSMUSG00000026114	missense	D/Y	554	Cnga3	ENSMUST00000195272.5:c.1660G>T	ENSMUSP00000142175.1:p.Asp554Tyr	H-2-Kb	8	7	5	IGYSYLFC	IGYSDLFC	SMM	61.623	1886.861	30.62	152	0.039	70.945	3976.673	56.053	14777.73	141.85	5865.3	66.6	1886.8614	61.62259741	2088.045702	75.29046857	22-1_par	0.757142857	1.042857143	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.041	152	0	0	NA	1qB	chr1-3216742-85113944	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.178811064	sgMsh2	cell line
chr1	127749062	127749062	C	T	ENSMUST00000038006.7	1	ENSMUSG00000026348	missense	P/L	108	Acmsd	ENSMUST00000038006.7:c.323C>T	ENSMUSP00000048482.6:p.Pro108Leu	H-2-Kb	8	10	2	YLRRFVGL	YPRRFVGL	NetMHCpan	116.9	1142.7	9.775	106	0.028	180.909	506.2	2.798	806.46	233.19	1142.7	116.9	185.2422298	191.3110256	205.9396641	170.5061311	22-1_par	0.742857143	0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.047	106	0	0	NA	1qE3	chr1-85662188-171504463	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.204978537	sgMsh2	cell line
chr1	37261746	37261746	G	T	ENSMUST00000195272.5	5	ENSMUSG00000026114	missense	D/Y	554	Cnga3	ENSMUST00000195272.5:c.1660G>T	ENSMUSP00000142175.1:p.Asp554Tyr	H-2-Kb	8	9	3	YSYLFCLS	YSDLFCLS	SMM	62.193	2017.158	32.434	152	0.039	124.823	5687.836	45.567	16129.38	267.11	8654.6	158.5	2017.158386	62.19278428	2721.071791	91.14650073	22-1_par	1.428571429	1.428571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.041	152	0	0	NA	1qB	chr1-3216742-85113944	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.178811064	sgMsh2	cell line
chr1	78817772	78817772	T	C	ENSMUST00000057262.7	1	ENSMUSG00000047330	missense	Y/H	46	Kcne4	ENSMUST00000057262.7:c.136T>C	ENSMUSP00000055415.6:p.Tyr46His	H-2-Kb	8	8	4	MSFHGVFL	MSFYGVFL	NetMHCpan	83	53.2	0.641	102	0.098	97.636	100.469	1.029	212.5	429.97	53.2	83	109.5821962	108.8278376	91.35661511	86.44502416	22-1_par	1.314285714	1.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.092	102	0	0	NA	1qC4	chr1-3216742-85113944	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.401234583	sgMsh2	cell line
chr1	20239379	20239379	T	A	ENSMUST00000088448.11	1	ENSMUSG00000043760	missense	T/S	2782	Pkhd1	ENSMUST00000088448.11:c.8344A>T	ENSMUSP00000085794.5:p.Thr2782Ser	H-2-Kb	8	5	7	CLYVMGSL	CLYVMGTL	NetMHCpan	312.6	357.4	1.143	203	0.069	338.645	416.709	1.231	617.85	460.06	357.4	312.6	408.0750101	337.0854446	425.3436955	340.2044578	22-1_par	1.6	1.6	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.078	203	0	0	NA	1qA4	chr1-3216742-85113944	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.340177146	sgMsh2	cell line
chr11	8870258	8870258	G	A	ENSMUST00000154153.7	5	ENSMUSG00000046634	missense	L/F	1687	Pkd1l1	ENSMUST00000154153.7:c.5057C>T	ENSMUSP00000120803.1:p.Leu1687Phe	H-2-Kb	8	5	7	MALLCTFL	MALLCTLL	SMM	262.265	395.13	1.507	66	0.152	375.491	387.415	1.032	464.4	600.16	379.7	486.9	395.1299959	262.2647967	378.2160895	264.0827294	22-1_par	2.542857143	2.542857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.18	66	0	0	NA	11qA1	chr11-3133205-69578588	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.785024184	sgMsh2	cell line
chr11	8870258	8870258	G	A	ENSMUST00000154153.7	5	ENSMUSG00000046634	missense	L/F	1687	Pkd1l1	ENSMUST00000154153.7:c.5057C>T	ENSMUSP00000120803.1:p.Leu1687Phe	H-2-Kb	8	9	3	CTFLACPV	CTLLACPV	SMM	301.12	1258.172	4.178	66	0.152	402.054	2145.365	5.336	4035.83	746.51	2476.3	384.6	1258.171954	301.1202761	1814.429089	419.5077612	22-1_par	1.828571429	1.828571429	TRUE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.18	66	0	0	NA	11qA1	chr11-3133205-69578588	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.785024184	sgMsh2	cell line
chr1	139469415	139469415	T	C	ENSMUST00000053364.11	1	ENSMUSG00000033952	missense	L/S	915	Aspm	ENSMUST00000053364.11:c.2744T>C	ENSMUSP00000059159.8:p.Leu915Ser	H-2-Kb	8	8	4	LSFSGLPV	LSFLGLPV	NetMHCpan	288.4	203.5	0.706	191	0.063	450.94	368.032	0.816	730.75	767.65	203.5	288.4	434.2501729	530.5667136	301.8144301	371.3128679	22-1_par	1.028571429	1.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.054	191	0	0	NA	1qE4	chr1-85662188-171504463	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.235507255	sgMsh2	cell line
chr1	37261746	37261746	G	T	ENSMUST00000195272.5	5	ENSMUSG00000026114	missense	D/Y	554	Cnga3	ENSMUST00000195272.5:c.1660G>T	ENSMUSP00000142175.1:p.Asp554Tyr	H-2-Kb	9	7	5	IGYSYLFCL	IGYSDLFCL	NetMHCpan	14.7	604	41.088	152	0.039	36.239	511.45	14.113	1040.7	21.06	604	14.7	418.8996524	51.41738673	395.5942769	56.26651281	22-1_par	1.357142857	1.357142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.041	152	0	0	NA	1qB	chr1-3216742-85113944	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.178811064	sgMsh2	cell line
chr1	151457684	151457684	T	TA	ENSMUST00000065625.11	1	ENSMUSG00000053286	FS	L/LX	646	Trmt1l	ENSMUST00000065625.11:c.1944dup	ENSMUSP00000068309.5:p.Phe649IlefsTer18	H-2-Kb	9	15	0	FVLSFASRL	NA	NetMHC	27.48	NA	NA	58	0.138	93.572	NA	NA	NA	27.48	NA	35.4	NA	151.7434661	NA	261.3665468	22-1_par	0.871428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1379	58	0	0	NA	1qG1	chr1-85662188-171504463	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.60141575	sgMsh2	cell line
chr11	3978024	3978024	A	C	ENSMUST00000020705.4	1	ENSMUSG00000020430	missense	I/L	555	Pes1	ENSMUST00000020705.4:c.1663A>C	ENSMUSP00000020705.4:p.Ile555Leu	H-2-Kb	9	3	9	IMFGKRRKL	IMFGKRRKI	SMMPMBEC	91.044	210.499	2.312	94	0.032	101.004	240.573	2.382	222.26	97.75	668	191.6	258.8868552	104.2581466	210.4989821	91.04372116	22-1_par	-1.514285714	-0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.044	94	0	0	NA	11qA1	chr11-3133205-69578588	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.191894801	sgMsh2	cell line
chr1	78817772	78817772	T	C	ENSMUST00000057262.7	1	ENSMUSG00000047330	missense	Y/H	46	Kcne4	ENSMUST00000057262.7:c.136T>C	ENSMUSP00000055415.6:p.Tyr46His	H-2-Kb	9	6	6	VVMSFHGVF	VVMSFYGVF	NetMHCpan	69.8	31.6	0.453	102	0.098	109.801	38.603	0.352	49.31	98.79	31.6	69.8	34.52311699	120.8119794	42.68251484	136.2228619	22-1_par	1.042857143	1.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.092	102	0	0	NA	1qC4	chr1-3216742-85113944	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.401234583	sgMsh2	cell line
chr1	174151552	174151552	T	G	ENSMUST00000179386.1	NA	ENSMUSG00000091950	missense	F/C	12	Olfr421-ps1	ENSMUST00000179386.1:c.35T>G	ENSMUSP00000136689.1:p.Phe12Cys	H-2-Kb	9	11	1	CVFTGFPQL	FVFTGFPQL	NetMHCpan	48.2	56.2	1.166	210	0.062	159.512	123.64	0.775	102.32	120.3	56.2	48.2	201.8877649	211.4024421	144.9606074	198.7238535	22-1_par	0.457142857	1.371428571	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.064	210	0	0	NA	1qH3	chr1-173922231-195166209	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.27911971	sgMsh2	cell line
chr1	55152729	55152729	A	C	ENSMUST00000162364.7	1	ENSMUSG00000025979	missense	M/L	201	Mob4	ENSMUST00000162364.7:c.601A>C	ENSMUSP00000125415.1:p.Met201Leu	H-2-Kb	9	3	9	KFVMKYNLL	KFVMKYNLM	NetMHC	141.52	245.88	1.737	190	0.032	202.342	270.43	1.336	245.88	141.52	744.5	393.2	248.9487787	189.282298	291.9106903	215.4021332	22-1_par	0.714285714	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.046	190	0	0	NA	1qC1.2	chr1-3216742-85113944	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.200617291	sgMsh2	cell line
chr1	127749062	127749062	C	T	ENSMUST00000038006.7	1	ENSMUSG00000026348	missense	P/L	108	Acmsd	ENSMUST00000038006.7:c.323C>T	ENSMUSP00000048482.6:p.Pro108Leu	H-2-Kb	9	9	3	RYLRRFVGL	RYPRRFVGL	NetMHCpan	135.7	374.1	2.757	106	0.028	197.779	421.516	2.131	161.84	145.38	374.1	135.7	468.9321403	273.5961615	472.3348608	250.1785091	22-1_par	0.742857143	0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.047	106	0	0	NA	1qE3	chr1-85662188-171504463	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.204978537	sgMsh2	cell line
chr1	139480166	139480166	T	C	ENSMUST00000053364.11	1	ENSMUSG00000033952	missense	Y/H	2264	Aspm	ENSMUST00000053364.11:c.6790T>C	ENSMUSP00000059159.8:p.Tyr2264His	H-2-Kb	9	7	5	IQRQHRARL	IQRQYRARL	NetMHC	173.46	29.87	0.172	260	0.027	430.277	259.954	0.604	29.87	173.46	206.4	863.3	374.2053566	466.7775928	313.5089908	393.7766863	22-1_par	-2.085714286	-1.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.035	260	0	0	NA	1qE4	chr1-85662188-171504463	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.152643591	sgMsh2	cell line
chr1	44174314	44174314	AT	A	ENSMUST00000027214.3	1	ENSMUSG00000026048	FS	N/X	823	Ercc5	ENSMUST00000027214.3:c.2475del	ENSMUSP00000027214.3:p.Phe825LeufsTer7	H-2-Kb	9	10	4	KNFLTKTSL	NA	NetMHCpan	212.9	NA	NA	63	0.175	316.246	NA	NA	NA	230.6	NA	212.9	NA	401.8925911	NA	574.4470454	22-1_par	0.614285714	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1746	63	0	0	NA	1qC1.1	chr1-3216742-85113944	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.761473458	sgMsh2	cell line
chr10	93847095	93847095	A	G	ENSMUST00000216224.1	5	ENSMUSG00000020020	missense	H/R	469	Usp44	ENSMUST00000216224.1:c.1406A>G	ENSMUSP00000149020.1:p.His469Arg	H-2-Kb	9	6	6	VNNIFRGQF	VNNIFHGQF	SMMPMBEC	221.947	133.122	0.6	401	0.042	271.269	162.74	0.6	130.07	252.73	249.6	455.2	192.357888	289.8077532	133.122051	221.9473684	22-1_par	-0.257142857	-0.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.048	401	0	0	NA	10qC2	chr10-33471244-129526639	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.209339782	sgMsh2	cell line
chr1	75482735	75482735	G	A	ENSMUST00000050899.6	1	ENSMUSG00000051703	missense	M/I	111	Tmem198	ENSMUST00000050899.6:c.333G>A	ENSMUSP00000057865.6:p.Met111Ile	H-2-Kb	9	10	2	AILVRSVGL	AMLVRSVGL	SMM	250.674	111.972	0.447	44	0.091	291.949	161.898	0.555	174.43	274.69	246.1	393.1	111.9721455	250.6744092	149.3653979	309.2074862	22-1_par	1.471428571	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.114	44	0	0	NA	1qC4	chr1-3216742-85113944	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.497181983	sgMsh2	cell line
chr10	78984249	78984249	T	C	ENSMUST00000058991.4	2	ENSMUSG00000046493	missense	V/A	153	Olfr1352	ENSMUST00000058991.4:c.458T>C	ENSMUSP00000054355.3:p.Val153Ala	H-2-Kb	9	8	4	IVSALHALL	IVSVLHALL	NetMHCpan	180.2	157.2	0.872	275	0.047	477.007	338.168	0.709	201.82	303.51	157.2	180.2	493.298733	780.0276543	474.5150595	650.5040428	22-1_par	1.571428571	1.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.041	275	0	0	NA	10qC1	chr10-33471244-129526639	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.178811064	sgMsh2	cell line
chr1	127749062	127749062	C	T	ENSMUST00000038006.7	1	ENSMUSG00000026348	missense	P/L	108	Acmsd	ENSMUST00000038006.7:c.323C>T	ENSMUSP00000048482.6:p.Pro108Leu	H-2-Kb	9	6	6	TVARYLRRF	TVARYPRRF	NetMHC	326.08	1086.39	3.332	106	0.028	488.093	1366.816	2.8	1086.39	326.08	1378.1	400.6	1355.532704	575.5857057	1556.861575	652.0036095	22-1_par	-0.914285714	-0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.047	106	0	0	NA	1qE3	chr1-85662188-171504463	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.204978537	sgMsh2	cell line
chr1	161159035	161159035	TG	T	ENSMUST00000135643.7	2	ENSMUSG00000049160	FS	P/X	51	Tex50	ENSMUST00000135643.7:c.152del	ENSMUSP00000154416.1:p.Pro51HisfsTer32	H-2-Kb	9	31	0	SYRAPYTSL	NA	NetMHC	336.58	NA	NA	122	0.082	482.279	NA	NA	NA	336.58	NA	586.5	NA	401.8925911	NA	562.6651281	22-1_par	-0.471428571	-0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.082	122	0	0	NA	1qH2.1	chr1-85662188-171504463	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.357622128	sgMsh2	cell line
chr1	37261746	37261746	G	T	ENSMUST00000195272.5	5	ENSMUSG00000026114	missense	D/Y	554	Cnga3	ENSMUST00000195272.5:c.1660G>T	ENSMUSP00000142175.1:p.Asp554Tyr	H-2-Kb	9	5	7	RSIGYSYLF	RSIGYSDLF	NetMHC	388.92	968.04	2.489	152	0.039	462.461	984.308	2.128	968.04	388.92	2035	489.3	805.5824568	435.622196	1000.575812	656.5230826	22-1_par	1.042857143	1.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.041	152	0	0	NA	1qB	chr1-3216742-85113944	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.178811064	sgMsh2	cell line
chr1	174151552	174151552	T	G	ENSMUST00000179386.1	NA	ENSMUSG00000091950	missense	F/C	12	Olfr421-ps1	ENSMUST00000179386.1:c.35T>G	ENSMUSP00000136689.1:p.Phe12Cys	H-2-Kb	9	8	4	VTVCVFTGF	VTVFVFTGF	NetMHCpan	268.6	272	1.013	210	0.062	486.266	350.998	0.722	305.49	467.58	272	268.6	432.6233939	543.3879457	396.5062159	504.9518876	22-1_par	2.2	2.357142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.064	210	0	0	NA	1qH3	chr1-173922231-195166209	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.27911971	sgMsh2	cell line
chr1	78697007	78697007	T	C	ENSMUST00000035779.14	1	ENSMUSG00000032883	missense	C/R	424	Acsl3	ENSMUST00000035779.14:c.1270T>C	ENSMUSP00000045291.8:p.Cys424Arg	H-2-Kb	9	7	5	ISKGRSTPL	ISKGCSTPL	SMMPMBEC	154.259	434.76	2.818	276	0.058	356.296	766.417	2.151	1105.13	524.18	1009.1	599.1	523.7330732	188.4126249	434.7604204	154.2588183	22-1_par	-1.157142857	-0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.063	276	0	0	NA	1qC4	chr1-3216742-85113944	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.274758464	sgMsh2	cell line
chr1	78817772	78817772	T	C	ENSMUST00000057262.7	1	ENSMUSG00000047330	missense	Y/H	46	Kcne4	ENSMUST00000057262.7:c.136T>C	ENSMUSP00000055415.6:p.Tyr46His	H-2-Kb	9	7	5	VMSFHGVFL	VMSFYGVFL	SMMPMBEC	396.506	315.682	0.796	102	0.098	469.306	352.413	0.751	953.07	1241.82	226.3	453.2	389.1436965	485.4114317	315.6821313	396.5062159	22-1_par	1.314285714	1.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.092	102	0	0	NA	1qC4	chr1-3216742-85113944	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.401234583	sgMsh2	cell line
chr11	69423196	69423196	C	T	ENSMUST00000108659.1	5	ENSMUSG00000005237	missense	D/N	4117	Dnah2	ENSMUST00000108659.1:c.12349G>A	ENSMUSP00000104299.1:p.Asp4117Asn	H-2-Db	9	7	5	LSVLNTYYI	LSVLDTYYI	NetMHC	7.71	302.27	39.205	19	0.211	22.382	600.93	26.849	302.27	7.71	528	9.8	673.9380857	34.96391051	673.8605002	36.27187449	22-1_par	0.814285714	0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.214	19	0	0	NA	11qB3	chr11-3133205-69578588	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.93330653	sgMsh2	cell line
chr11	103614521	103614521	GT	G	ENSMUST00000167262.1	1	ENSMUSG00000034239	FS	N/X	31	Gm884	ENSMUST00000167262.1:c.92del	ENSMUSP00000129662.1:p.Asn31ThrfsTer19	H-2-Kb	8	17	0	IFFLMQNL	NA	SMM	13.544	NA	NA	115	0.087	15.924	NA	NA	NA	14.52	NA	24.3	NA	13.54378341	NA	17.32766328	22-1_par	1.157142857	1.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.094	115	0	0	NA	11qE1	chr11-83185009-121956668	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.409957074	sgMsh2	cell line
chr12	113896463	113896463	T	G	ENSMUST00000103474.4	NA	ENSMUSG00000076665	missense	Q/P	103	Ighv7-1	ENSMUST00000103474.4:c.308A>C	ENSMUSP00000100255.4:p.Gln103Pro	H-2-Kb	8	5	7	QSILYLPM	QSILYLQM	NetMHC	26.03	56.12	2.156	152	0.053	72.335	150.347	2.078	56.12	26.03	95.7	44.5	204.9934573	100.1705365	232.6697911	123.2366829	22-1_par	1.471428571	1.471428571	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.06	152	0	0	NA	12qF1	chr12-72912890-119465464	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.261674728	sgMsh2	cell line
chr11	46584388	46584388	TA	T	ENSMUST00000050937.6	1	ENSMUSG00000046974	FS	K/X	137	BC053393	ENSMUST00000050937.6:c.411del	ENSMUSP00000050057.6:p.Gly138AlafsTer19	H-2-Kb	8	19	0	FSFCFWFL	NA	SMM	7.443	NA	NA	164	0.03	32.846	NA	NA	NA	56.45	NA	64.1	NA	7.442862571	NA	9.241447486	22-1_par	1.857142857	1.857142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.033	164	0	0	NA	11qB1.1	chr11-3133205-69578588	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.1439211	sgMsh2	cell line
chr11	97711127	97711127	G	GTCACTGCT	ENSMUST00000103147.4	1	ENSMUSG00000069744	FS	V/VTAX	108	Psmb3	ENSMUST00000103147.4:c.325_326insCTGCTTCA	ENSMUSP00000099436.4:p.Ile109ThrfsTer27	H-2-Kb	8	23	0	SSPSFALW	NA	NetMHC	69.88	NA	NA	252	0.024	157.578	NA	NA	NA	69.88	NA	1050.4	NA	106.3506136	NA	208.8045702	22-1_par	0.614285714	0.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.033	252	0	0	NA	11qD	chr11-83185009-121956668	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.1439211	sgMsh2	cell line
chr12	31461720	31461720	G	A	ENSMUST00000001254.5	1	ENSMUSG00000001225	missense	A/T	435	Slc26a3	ENSMUST00000001254.5:c.1303G>A	ENSMUSP00000001254.5:p.Ala435Thr	H-2-Kb	8	10	2	ATLALGNL	AALALGNL	SMM	131.444	203.114	1.545	135	0.052	150.352	200.707	1.335	155.82	157.57	198.3	205.1	203.114066	131.4437679	226.3288934	143.1330745	22-1_par	1.228571429	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.063	135	0	0	NA	12qA2	chr12-3501831-72893260	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.274758464	sgMsh2	cell line
chr11	69035794	69035794	A	T	ENSMUST00000116359.2	1	ENSMUSG00000020898	missense	T/S	1134	Ctc1	ENSMUST00000116359.2:c.3400A>T	ENSMUSP00000112063.2:p.Thr1134Ser	H-2-Kb	8	10	2	LSLLLRTL	LTLLLRTL	NetMHCpan	162.7	297.6	1.829	54	0.13	222.966	409.685	1.837	656.13	208.39	297.6	162.7	422.4156501	254.5305993	396.9538331	237.5417764	22-1_par	1.314285714	1.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.114	54	0	0	NA	11qB3	chr11-3133205-69578588	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.497181983	sgMsh2	cell line
chr11	89505218	89505218	C	G	ENSMUST00000128717.8	5	ENSMUSG00000047773	missense	R/T	254	Ankfn1	ENSMUST00000128717.8:c.761G>C	ENSMUSP00000121290.2:p.Arg254Thr	H-2-Kb	8	11	1	TYRLYRRM	RYRLYRRM	NetMHC	266.15	583.52	2.192	68	0.25	394.67	671.838	1.702	583.52	266.15	623	291.9	720.6759014	507.8553127	749.4454029	497.4391928	22-1_par	-1.485714286	-1.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.229	68	0	0	NA	11qC	chr11-83185009-121956668	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.998725212	sgMsh2	cell line
chr11	53997524	53997524	A	G	ENSMUST00000020586.6	1	ENSMUSG00000020334	missense	V/A	226	Slc22a4	ENSMUST00000020586.6:c.677T>C	ENSMUSP00000020586.6:p.Val226Ala	H-2-Kb	8	11	1	ARIIFSTL	VRIIFSTL	SMMPMBEC	289.561	84.477	0.292	110	0.055	308.763	81.297	0.263	45.05	323.26	109.8	471.3	78.11600059	294.2659418	84.47729517	289.5609548	22-1_par	1.371428571	1.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.08	110	0	0	NA	11qB1.3	chr11-3133205-69578588	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.348899637	sgMsh2	cell line
chr13	100806626	100806626	T	A	ENSMUST00000067246.5	1	ENSMUSG00000021629	missense	S/C	632	Slc30a5	ENSMUST00000067246.5:c.1894A>T	ENSMUSP00000065764.4:p.Ser632Cys	H-2-Kb	8	8	4	IFLCVIPL	IFLSVIPL	SMM	121.546	91.778	0.755	314	0.051	296.326	173.206	0.585	233.76	429.82	262.3	583.4	91.77829809	121.5458122	112.6522836	162.832091	22-1_par	2.857142857	2.957142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.049	314	0	0	NA	13qD1	chr13-23782291-119495179	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.213701028	sgMsh2	cell line
chr11	98052893	98052893	C	A	ENSMUST00000017544.8	1	ENSMUSG00000017400	missense	K/N	30	Stac2	ENSMUST00000017544.8:c.90G>T	ENSMUSP00000017544.2:p.Lys30Asn	H-2-Kb	8	5	7	STLQETNL	STLQETKL	SMMPMBEC	156.221	542.925	3.475	50	0.18	318.931	1576.484	4.943	2829.64	460.55	2438.9	683.3	714.0687051	177.3127641	542.9252	156.221211	22-1_par	-0.614285714	-0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.205	50	0	0	NA	11qD	chr11-83185009-121956668	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.894055321	sgMsh2	cell line
chr12	31282609	31282609	TG	T	ENSMUST00000002979.14	1	ENSMUSG00000002900	FS	L/X	291	Lamb1	ENSMUST00000002979.14:c.877del	ENSMUSP00000002979.8:p.Asp293IlefsTer63	H-2-Kb	8	43	0	ATPVNAPL	NA	SMMPMBEC	264.083	NA	NA	159	0.094	424.814	NA	NA	NA	542.91	NA	753.3	NA	306.71852	NA	264.0827294	22-1_par	0.342857143	0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.104	159	0	0	NA	12qA2	chr12-3501831-72893260	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.453569528	sgMsh2	cell line
chr11	97711127	97711127	G	GTCACTGCT	ENSMUST00000103147.4	1	ENSMUSG00000069744	FS	V/VTAX	108	Psmb3	ENSMUST00000103147.4:c.325_326insCTGCTTCA	ENSMUSP00000099436.4:p.Ile109ThrfsTer27	H-2-Kb	8	26	0	SFALWTSL	NA	NetMHCpan	232.7	NA	NA	252	0.024	422.35	NA	NA	NA	621.23	NA	232.7	NA	382.5956254	NA	462.1042896	22-1_par	1.4	1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.033	252	0	0	NA	11qD	chr11-83185009-121956668	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.1439211	sgMsh2	cell line
chr12	111627484	111627485	TGA	T	ENSMUST00000084953.12	1	ENSMUSG00000007411	FS	LR/LX	261-262	Mark3	ENSMUST00000084953.12:c.792_793del	ENSMUSP00000082017.5:p.Arg264SerfsTer30	H-2-Kb	8	19	0	VQNPFLHV	NA	SMM	312.421	NA	NA	34	0.147	461.8	NA	NA	NA	839.72	NA	517.4	NA	312.4208431	NA	406.2000757	22-1_par	-0.142857143	-0.142857143	FALSE	FALSE	FALSE	0	FALSE	1	Strelka2;Vardict	2	0.1471	34	0	0	NA	12qF1	chr12-72912890-119465464	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.641539208	sgMsh2	cell line
chr11	78403154	78403154	A	C	ENSMUST00000001122.5	1	ENSMUSG00000001095	missense	W/G	261	Slc13a2	ENSMUST00000001122.5:c.781T>G	ENSMUSP00000001122.5:p.Trp261Gly	H-2-Kb	8	10	2	SGFGFAFP	SWFGFAFP	SMM	119.053	255.117	2.143	245	0.033	450.753	1047.911	2.325	3163.4	4291.46	1814.8	764.5	255.1173529	119.0529058	281.0217928	137.0061303	22-1_par	1.114285714	1.228571429	FALSE	FALSE	TRUE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.035	245	0	0	NA	11qB5	chr11-69590981-82929860	3	3	0	0.9	3.925120919	POOR GOF (79.6%)	1	0.152643591	sgMsh2	cell line
chr11	103614521	103614521	GT	G	ENSMUST00000167262.1	1	ENSMUSG00000034239	FS	N/X	31	Gm884	ENSMUST00000167262.1:c.92del	ENSMUSP00000129662.1:p.Asn31ThrfsTer19	H-2-Kb	9	16	0	IIFFLMQNL	NA	NetMHCpan	15.9	NA	NA	115	0.087	62.88	NA	NA	NA	25.24	NA	15.9	NA	116.4420922	NA	100.519426	22-1_par	1.157142857	2.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.094	115	0	0	NA	11qE1	chr11-83185009-121956668	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.409957074	sgMsh2	cell line
chr11	89505218	89505218	C	G	ENSMUST00000128717.8	5	ENSMUSG00000047773	missense	R/T	254	Ankfn1	ENSMUST00000128717.8:c.761G>C	ENSMUSP00000121290.2:p.Arg254Thr	H-2-Kb	9	10	2	WTYRLYRRM	WRYRLYRRM	NetMHC	28.98	287.99	9.938	68	0.25	76.609	320.427	4.183	287.99	28.98	1537.8	38.6	315.5803838	120.8119794	325.2744865	114.6172542	22-1_par	-1.485714286	-1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.229	68	0	0	NA	11qC	chr11-83185009-121956668	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.998725212	sgMsh2	cell line
chr13	42160163	42160163	A	T	ENSMUST00000060148.5	5	ENSMUSG00000021366	missense	N/Y	1960	Hivep1	ENSMUST00000060148.5:c.5878A>T	ENSMUSP00000056147.5:p.Asn1960Tyr	H-2-Kb	9	7	5	VSSSYPNPL	VSSSNPNPL	NetMHC	56.66	1434.88	25.324	190	0.037	148.264	1127.852	7.607	1434.88	56.66	1971	136.9	570.3087043	159.628341	820.8239126	219.4067579	22-1_par	-0.828571429	-0.657142857	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;Vardict	3	0.041	190	0	0	NA	13qA4	chr13-23782291-119495179	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.178811064	sgMsh2	cell line
chr11	53997524	53997524	A	G	ENSMUST00000020586.6	1	ENSMUSG00000020334	missense	V/A	226	Slc22a4	ENSMUST00000020586.6:c.677T>C	ENSMUSP00000020586.6:p.Val226Ala	H-2-Kb	9	10	2	SARIIFSTL	SVRIIFSTL	NetMHC	84.62	101.98	1.205	110	0.055	201.921	222.985	1.104	101.98	84.62	120.8	114.7	325.1696473	289.1412139	380.4083139	329.0409876	22-1_par	1.371428571	1.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.08	110	0	0	NA	11qB1.3	chr11-3133205-69578588	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.348899637	sgMsh2	cell line
chr13	42160163	42160163	A	T	ENSMUST00000060148.5	5	ENSMUSG00000021366	missense	N/Y	1960	Hivep1	ENSMUST00000060148.5:c.5878A>T	ENSMUSP00000056147.5:p.Asn1960Tyr	H-2-Kb	9	9	3	SSYPNPLGL	SSNPNPLGL	NetMHCpan	97.5	4600.5	47.185	190	0.037	164.883	3731.806	22.633	4564.6	98.5	4600.5	97.5	2270.439846	231.2650474	2899.011913	324.526376	22-1_par	-0.114285714	-0.114285714	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;Vardict	3	0.041	190	0	0	NA	13qA4	chr13-23782291-119495179	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.178811064	sgMsh2	cell line
chr12	113896463	113896463	T	G	ENSMUST00000103474.4	NA	ENSMUSG00000076665	missense	Q/P	103	Ighv7-1	ENSMUST00000103474.4:c.308A>C	ENSMUSP00000100255.4:p.Gln103Pro	H-2-Kb	9	7	5	ILYLPMNAL	ILYLQMNAL	NetMHCpan	121.7	88.9	0.73	152	0.053	209.501	190.876	0.911	120.47	129.86	88.9	121.7	261.2823058	289.1412139	269.9292823	341.3893746	22-1_par	0.7	1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.06	152	0	0	NA	12qF1	chr12-72912890-119465464	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.261674728	sgMsh2	cell line
chr11	89505218	89505218	C	G	ENSMUST00000128717.8	5	ENSMUSG00000047773	missense	R/T	254	Ankfn1	ENSMUST00000128717.8:c.761G>C	ENSMUSP00000121290.2:p.Arg254Thr	H-2-Kb	9	6	6	KAWEWTYRL	KAWEWRYRL	NetMHCpan	115.3	107.5	0.932	68	0.25	237.456	234.831	0.989	113.12	135.2	107.5	115.3	356.5414284	339.7113053	400.1750427	395.5942769	22-1_par	-1.142857143	-1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.229	68	0	0	NA	11qC	chr11-83185009-121956668	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.998725212	sgMsh2	cell line
chr12	87081875	87081875	A	G	ENSMUST00000146292.7	1	ENSMUSG00000034145	missense	E/G	558	Tmem63c	ENSMUST00000146292.7:c.1673A>G	ENSMUSP00000119872.1:p.Glu558Gly	H-2-Kb	9	10	2	MGLMRLGSL	MELMRLGSL	NetMHCpan	102.9	2715.7	26.392	159	0.019	276.006	1658.686	6.01	2411.41	181.97	2715.7	102.9	905.9620379	502.4698412	703.4771574	370.0411313	22-1_par	1.085714286	1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.032	159	0	0	NA	12qD2	chr12-72912890-119465464	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.139559855	sgMsh2	cell line
chr13	100806626	100806626	T	A	ENSMUST00000067246.5	1	ENSMUSG00000021629	missense	S/C	632	Slc30a5	ENSMUST00000067246.5:c.1894A>T	ENSMUSP00000065764.4:p.Ser632Cys	H-2-Kb	9	7	5	LIFLCVIPL	LIFLSVIPL	SMMPMBEC	203.822	280.705	1.377	314	0.051	221.831	280.015	1.262	266.74	218.18	291.3	871	279.3251239	225.4810248	280.704904	203.8215031	22-1_par	2.857142857	3.728571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.049	314	0	0	NA	13qD1	chr13-23782291-119495179	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.213701028	sgMsh2	cell line
chr11	46584388	46584388	TA	T	ENSMUST00000050937.6	1	ENSMUSG00000046974	FS	K/X	137	BC053393	ENSMUST00000050937.6:c.411del	ENSMUSP00000050057.6:p.Gly138AlafsTer19	H-2-Kb	9	19	0	FSFCFWFLW	NA	SMMPMBEC	139.717	NA	NA	164	0.03	256.684	NA	NA	NA	330.09	NA	1872.5	NA	183.2778578	NA	139.7172407	22-1_par	1.842857143	1.857142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.033	164	0	0	NA	11qB1.1	chr11-3133205-69578588	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.1439211	sgMsh2	cell line
chr13	50703131	50703131	A	T	ENSMUST00000099518.3	1	ENSMUSG00000094918	missense	K/I	935	Gm8765	ENSMUST00000099518.3:c.2804A>T	ENSMUSP00000097118.2:p.Lys935Ile	H-2-Kb	9	3	9	LTYRRMGDI	LTYRRMGDK	SMMPMBEC	277.492	1829.153	6.592	227	0.106	363.39	7556.905	20.796	14693.06	366.08	11319.7	360.7	3794.110717	518.9314595	1829.152858	277.4917016	22-1_par	-1.114285714	-0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.104	227	0	0	NA	13qA5	chr13-23782291-119495179	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.453569528	sgMsh2	cell line
chr11	78403154	78403154	A	C	ENSMUST00000001122.5	1	ENSMUSG00000001095	missense	W/G	261	Slc13a2	ENSMUST00000001122.5:c.781T>G	ENSMUSP00000001122.5:p.Trp261Gly	H-2-Kb	9	6	6	VNFASGFGF	VNFASWFGF	NetMHCpan	305.4	112.8	0.369	245	0.033	435.303	110.44	0.254	108.08	422.78	112.8	305.4	104.7393803	447.8267173	126.255411	541.0656958	22-1_par	1.228571429	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.035	245	0	0	NA	11qB5	chr11-69590981-82929860	3	3	0	0.9	3.925120919	POOR GOF (79.6%)	1	0.152643591	sgMsh2	cell line
chr11	97711127	97711127	G	GTCACTGCT	ENSMUST00000103147.4	1	ENSMUSG00000069744	FS	V/VTAX	108	Psmb3	ENSMUST00000103147.4:c.325_326insCTGCTTCA	ENSMUSP00000099436.4:p.Ile109ThrfsTer27	H-2-Kb	9	25	0	PSFALWTSL	NA	SMMPMBEC	214.907	NA	NA	252	0.024	347.757	NA	NA	NA	517.4	NA	472.1	NA	223.4138023	NA	214.9067221	22-1_par	1.4	1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.033	252	0	0	NA	11qD	chr11-83185009-121956668	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.1439211	sgMsh2	cell line
chr12	17274424	17274424	A	G	ENSMUST00000057288.5	1	ENSMUSG00000020571	missense	Q/R	92	Pdia6	ENSMUST00000057288.5:c.275A>G	ENSMUSP00000052912.5:p.Gln92Arg	H-2-Kb	9	5	7	VNADKHRSL	VNADKHQSL	SMM	295.876	219.842	0.743	144	0.056	418.052	336.167	0.804	590.84	653.91	447.3	517.5	219.8416627	295.876178	225.0349638	318.6031021	22-1_par	-1.471428571	-1.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.065	144	0	0	NA	12qA1.1	chr12-3501831-72893260	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.283480955	sgMsh2	cell line
chr12	76837520	76837520	A	G	ENSMUST00000041008.9	1	ENSMUSG00000033373	missense	S/G	5	Fntb	ENSMUST00000041008.9:c.13A>G	ENSMUSP00000035498.9:p.Ser5Gly	H-2-Kb	9	5	1	GSFTYYCPP	SSFTYYCPP	SMM	112.489	39.729	0.353	147	0.041	435.943	82.349	0.189	129.02	1851.66	102	716.2	39.72921646	112.4889855	62.69746764	155.6861575	22-1_par	-0.171428571	0.114285714	FALSE	FALSE	TRUE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.046	147	0	0	NA	12qC3	chr12-72912890-119465464	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.200617291	sgMsh2	cell line
chr14	72563513	72563513	T	C	ENSMUST00000089017.11	1	ENSMUSG00000033487	missense	Y/C	599	Fndc3a	ENSMUST00000089017.11:c.1796A>G	ENSMUSP00000086411.5:p.Tyr599Cys	H-2-Db	9	5	7	GAPINKCVV	GAPINKYVV	NetMHC	58.71	26.92	0.459	357	0.022	256.033	200.662	0.784	26.92	58.71	92.6	130.5	419.3918629	556.6984345	308.7237209	381.5662905	22-1_par	0.914285714	0.914285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.036	357	0	0	NA	14qD2	chr14-53294676-123291781	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.157004837	sgMsh2	cell line
chr14	50515857	50515857	A	G	ENSMUST00000217437.1	5	ENSMUSG00000068431	missense	I/V	218	Olfr742	ENSMUST00000217437.1:c.652A>G	ENSMUSP00000150814.1:p.Ile218Val	H-2-Db	9	8	4	FLFVMGTYI	FLFIMGTYI	SMMPMBEC	345.597	615.985	1.782	292	0.062	403.545	759.682	1.883	630.94	352.5	1948.3	1264.7	888.4234229	454.5901278	615.9848061	345.5970287	22-1_par	1.571428571	2.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.068	292	0	0	NA	14qC1	chr14-6587069-53079320	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.296564692	sgMsh2	cell line
chr14	75339345	75339345	T	G	ENSMUST00000022577.5	5	ENSMUSG00000022000	missense	L/R	1631	Zc3h13	ENSMUST00000022577.5:c.4892T>G	ENSMUSP00000022577.5:p.Leu1631Arg	H-2-Db	9	8	4	LGARNMAAL	LGALNMAAL	NetMHC	381.09	449.82	1.18	192	0.031	467.087	449.577	0.963	449.82	381.09	383.3	387.7	480.4188065	546.5375429	449.334743	546.4746241	22-1_par	0.442857143	0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.042	192	0	0	NA	14qD3	chr14-53294676-123291781	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.18317231	sgMsh2	cell line
chr14	67734207	67734207	A	G	ENSMUST00000150768.7	5	ENSMUSG00000034327	missense	N/D	244	Kctd9	ENSMUST00000150768.7:c.730A>G	ENSMUSP00000114489.1:p.Asn244Asp	H-2-Kb	8	5	7	INFKMADL	INFKMANL	NetMHCpan	12.7	3.7	0.291	136	0.066	20.204	3.938	0.195	3.31	13.57	3.7	12.7	4.175802981	26.89923939	4.474453509	26.83737286	22-1_par	-0.085714286	0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.06	136	0	0	NA	14qD1	chr14-53294676-123291781	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.261674728	sgMsh2	cell line
chr17	19811831	19811831	T	A	ENSMUST00000172203.1	5	ENSMUSG00000091771	missense	S/R	622	Vmn2r103	ENSMUST00000172203.1:c.1866T>A	ENSMUSP00000126756.1:p.Ser622Arg	H-2-Kb	8	8	4	RALRYILL	RALSYILL	NetMHC	23.68	44.24	1.868	454	0.04	44.948	69.404	1.544	44.24	23.68	43.9	26.4	94.56708451	63.49506908	104.6501849	69.1416915	22-1_par	1.7	1.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.034	454	0	0	NA	17qA3.2	chr17-8169809-94740433	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.148282346	sgMsh2	cell line
chr14	61214123	61214123	CA	C	ENSMUST00000119943.7	5	ENSMUSG00000048279	FS	T/X	4539	Sacs	ENSMUST00000119943.7:c.13618del	ENSMUSP00000113377.1:p.Arg4540GlyfsTer22	H-2-Kb	8	15	0	ICFLFRRF	NA	SMMPMBEC	56.982	NA	NA	299	0.02	74.54	NA	NA	NA	77.78	NA	71.3	NA	111.3627636	NA	56.9823033	22-1_par	0.814285714	1.057142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.025	299	0	0	NA	14qD1	chr14-53294676-123291781	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.109031137	sgMsh2	cell line
chr15	57949018	57949018	T	G	ENSMUST00000022992.12	1	ENSMUSG00000022364	missense	F/L	502	Tbc1d31	ENSMUST00000022992.12:c.1506T>G	ENSMUSP00000022992.6:p.Phe502Leu	H-2-Kb	8	9	3	LALPFVKL	LAFPFVKL	NetMHCpan	42.5	9.4	0.221	229	0.096	123.829	28.006	0.226	18.45	85.2	9.4	42.5	40.2476011	168.1666993	37.56124682	162.4575876	22-1_par	1.557142857	1.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.111	229	0	0	NA	15qD1	chr15-3279130-102454328	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.484098247	sgMsh2	cell line
chr14	24136586	24136586	T	C	ENSMUST00000090398.10	1	ENSMUSG00000021782	missense	Y/C	1882	Dlg5	ENSMUST00000090398.10:c.5645A>G	ENSMUSP00000087879.4:p.Tyr1882Cys	H-2-Kb	8	11	1	CSRYFTGV	YSRYFTGV	NetMHC	86.53	44.2	0.511	314	0.041	172.577	122.671	0.711	44.2	86.53	60.1	120.9	185.2422298	224.2538976	197.1242255	304.6070846	22-1_par	-0.1	-0.1	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.049	314	0	0	NA	14qA3	chr14-6587069-53079320	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.213701028	sgMsh2	cell line
chr14	100022714	100022714	A	G	ENSMUST00000228216.1	NA	ENSMUSG00000072294	missense	V/A	193	Klf12	ENSMUST00000228216.1:c.578T>C	ENSMUSP00000153901.1:p.Val193Ala	H-2-Kb	8	6	6	VVVQSAPV	VVVQSVPV	NetMHC	176.04	1105.55	6.28	276	0.036	267.774	943.355	3.523	1105.55	176.04	1341.9	683	765.1384027	264.691503	781.1600059	270.8569601	22-1_par	1.214285714	1.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.041	276	0	0	NA	14qE2.3	chr14-53294676-123291781	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.178811064	sgMsh2	cell line
chr15	88601011	88601011	G	T	ENSMUST00000066949.8	NA	ENSMUSG00000054117	missense	G/V	183	Zdhhc25	ENSMUST00000066949.8:c.548G>T	ENSMUSP00000136289.1:p.Gly183Val	H-2-Kb	8	4	8	VLCSYMRV	VLCSYMRG	SMMPMBEC	124.091	616.226	4.966	334	0.096	175.965	5764.353	32.759	10912.48	210.76	10924.8	626.8	550.4780419	141.1692151	616.2259741	124.0909187	22-1_par	0.828571429	0.828571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.093	334	0	0	NA	15qE3	chr15-3279130-102454328	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.405595828	sgMsh2	cell line
chr15	74571462	74571462	A	G	ENSMUST00000042035.15	1	ENSMUSG00000034730	missense	I/V	991	Adgrb1	ENSMUST00000042035.15:c.2971A>G	ENSMUSP00000046097.9:p.Ile991Val	H-2-Kb	8	5	7	INFCLSVI	INFCLSII	NetMHCpan	74.2	81.8	1.102	341	0.056	304.596	395.846	1.3	322.08	329.1	81.8	74.2	469.6128803	290.2284617	583.0959165	318.9627742	22-1_par	1.928571429	1.928571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.053	341	0	0	NA	15qD3	chr15-3279130-102454328	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.23114601	sgMsh2	cell line
chr16	22951181	22951181	T	G	ENSMUST00000023590.8	1	ENSMUSG00000022877	missense	L/R	20	Hrg	ENSMUST00000023590.8:c.59T>G	ENSMUSP00000023590.8:p.Leu20Arg	H-2-Kb	8	8	4	TALRLVTL	TALLLVTL	NetMHCpan	204.8	335.4	1.638	155	0.161	329.426	403.408	1.225	586.06	334.16	335.4	204.8	405.2658414	332.4604589	401.5503419	326.3923717	22-1_par	1.742857143	1.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.17	155	0	0	NA	16qB1	chr16-4630421-97886207	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.741411729	sgMsh2	cell line
chr14	50515857	50515857	A	G	ENSMUST00000217437.1	5	ENSMUSG00000068431	missense	I/V	218	Olfr742	ENSMUST00000217437.1:c.652A>G	ENSMUSP00000150814.1:p.Ile218Val	H-2-Kb	8	11	1	VMGTYILV	IMGTYILV	SMMPMBEC	429.279	418.543	0.975	292	0.062	464.035	506.612	1.092	519.21	464.9	679.8	624.3	494.0148455	463.16955	418.5429201	429.2793522	22-1_par	1.714285714	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.068	292	0	0	NA	14qC1	chr14-6587069-53079320	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.296564692	sgMsh2	cell line
chr14	61211277	61211277	A	G	ENSMUST00000119943.7	5	ENSMUSG00000048279	missense	I/V	3591	Sacs	ENSMUST00000119943.7:c.10771A>G	ENSMUSP00000113377.1:p.Ile3591Val	H-2-Kb	8	11	1	VGLKYALS	IGLKYALS	SMM	132.355	141.169	1.067	158	0.076	325.134	307.633	0.946	563.89	497.8	435.9	466.3	141.1692151	132.3548926	179.3659491	183.9670312	22-1_par	0.428571429	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.08	158	0	0	NA	14qD1	chr14-53294676-123291781	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.348899637	sgMsh2	cell line
chr14	50515857	50515857	A	G	ENSMUST00000217437.1	5	ENSMUSG00000068431	missense	I/V	218	Olfr742	ENSMUST00000217437.1:c.652A>G	ENSMUSP00000150814.1:p.Ile218Val	H-2-Kb	8	4	8	LVIPFLFV	LVIPFLFI	SMM	466.38	846.72	1.816	292	0.062	489.873	813.042	1.66	1838.58	1110.09	336.1	488	846.7203545	466.380088	779.3633877	491.7450535	22-1_par	2.957142857	2.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.068	292	0	0	NA	14qC1	chr14-6587069-53079320	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.296564692	sgMsh2	cell line
chr15	27871292	27871292	TC	T	ENSMUST00000090247.6	5	ENSMUSG00000022263	FS	E/X	639	Trio	ENSMUST00000090247.6:c.1915del	ENSMUSP00000087714.5:p.Glu639AsnfsTer42	H-2-Kb	9	12	0	VTPKRFIRL	NA	NetMHC	11.37	NA	NA	66	0.152	39.538	NA	NA	NA	11.37	NA	19.2	NA	63.40302809	NA	59.87561676	22-1_par	-0.485714286	0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.17	66	0	0	NA	15qB1	chr15-3279130-102454328	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.741411729	sgMsh2	cell line
chr15	91149194	91149194	G	C	ENSMUST00000069511.7	1	ENSMUSG00000055782	missense	T/S	673	Abcd2	ENSMUST00000069511.7:c.2018C>G	ENSMUSP00000068940.6:p.Thr673Ser	H-2-Kb	9	5	7	SLWKYHSHL	SLWKYHTHL	NetMHCpan	19	19.3	1.016	121	0.074	116.39	135.735	1.166	28.11	21.31	19.3	19	335.8226621	269.2216614	243.3604501	211.4706012	22-1_par	-1.357142857	-1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.071	121	0	0	NA	15qE3	chr15-3279130-102454328	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.309648428	sgMsh2	cell line
chr15	98724510	98724510	C	T	ENSMUST00000003445.7	1	ENSMUSG00000003355	missense	G/S	161	Fkbp11	ENSMUST00000003445.7:c.481G>A	ENSMUSP00000003445.6:p.Gly161Ser	H-2-Kb	9	10	2	VSIAMVPAL	VGIAMVPAL	NetMHC	54.29	203.82	3.754	83	0.084	134.391	378.744	2.818	203.82	54.29	140.1	59.8	599.9430132	208.9825384	553.6687348	209.0499173	22-1_par	2.342857143	2.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.095	83	0	0	NA	15qF1	chr15-3279130-102454328	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.414318319	sgMsh2	cell line
chr14	61211277	61211277	A	G	ENSMUST00000119943.7	5	ENSMUSG00000048279	missense	I/V	3591	Sacs	ENSMUST00000119943.7:c.10771A>G	ENSMUSP00000113377.1:p.Ile3591Val	H-2-Kb	9	3	9	SWVEFLRNV	SWVEFLRNI	NetMHC	79.74	106.91	1.341	158	0.076	201.971	200.111	0.991	106.91	79.74	131	160.1	269.2216614	243.8428356	508.4520469	492.3228579	22-1_par	0.5	0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.08	158	0	0	NA	14qD1	chr14-53294676-123291781	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.348899637	sgMsh2	cell line
chr14	100022714	100022714	A	G	ENSMUST00000228216.1	NA	ENSMUSG00000072294	missense	V/A	193	Klf12	ENSMUST00000228216.1:c.578T>C	ENSMUSP00000153901.1:p.Val193Ala	H-2-Kb	9	10	2	SAPVVYTAV	SVPVVYTAV	NetMHC	125.24	167.39	1.337	276	0.036	443.3	550.863	1.243	167.39	125.24	319.9	191.4	781.8258038	695.2003787	998.2745515	863.4754612	22-1_par	1.542857143	1.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.041	276	0	0	NA	14qE2.3	chr14-53294676-123291781	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.178811064	sgMsh2	cell line
chr14	66638002	66638002	AG	A	ENSMUST00000159068.1	2	ENSMUSG00000045875	FS	R/X	142	Adra1a	ENSMUST00000159068.1:c.428del	ENSMUSP00000124570.1:p.Gly143AlafsTer55	H-2-Kb	9	7	6	VTQRRASGL	VTQRRGVRA	NetMHC	174.37	6804.62	39.024	30	0.2	417.885	6514.6	15.589	6804.62	174.37	9222.8	390	6224.579241	445.7691405	3901.665199	519.0987702	22-1_par	-1.157142857	-1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.184	30	0	0	NA	14qD1	chr14-53294676-123291781	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.802469166	sgMsh2	cell line
chr17	19811831	19811831	T	A	ENSMUST00000172203.1	5	ENSMUSG00000091771	missense	S/R	622	Vmn2r103	ENSMUST00000172203.1:c.1866T>A	ENSMUSP00000126756.1:p.Ser622Arg	H-2-Kb	9	8	4	RALRYILLL	RALSYILLL	NetMHCpan	84.6	108.3	1.28	454	0.04	310.18	251.553	0.811	212.63	186.74	108.3	84.6	290.4758291	433.6206938	389.2691619	454.2030017	22-1_par	1.985714286	1.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.034	454	0	0	NA	17qA3.2	chr17-8169809-94740433	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.148282346	sgMsh2	cell line
chr16	5216072	5216072	T	C	ENSMUST00000050160.5	1	ENSMUSG00000051669	missense	Y/C	219	AU021092	ENSMUST00000050160.5:c.656A>G	ENSMUSP00000058860.4:p.Tyr219Cys	H-2-Kb	9	11	1	CMDIFCANM	YMDIFCANM	NetMHC	203.68	166.3	0.816	272	0.037	354.843	333.587	0.94	166.3	203.68	354.9	595	329.6932077	302.0716724	337.4815227	407.6148523	22-1_par	0.928571429	1.785714286	TRUE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;Vardict	3	0.045	272	0	0	NA	16qA1	chr16-4630421-97886207	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.196256046	sgMsh2	cell line
chr14	8039749	8039749	T	C	ENSMUST00000166497.8	1	ENSMUSG00000025277	missense	Y/H	41	Abhd6	ENSMUST00000166497.8:c.121T>C	ENSMUSP00000129169.1:p.Tyr41His	H-2-Kb	9	7	5	IYYWHWRRT	IYYWYWRRT	SMMPMBEC	116.212	92.523	0.796	257	0.043	176.066	121.655	0.691	147.34	206.55	126.6	331.7	116.7105189	145.5827772	92.52306262	116.211739	22-1_par	-2.285714286	-1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.046	257	0	0	NA	14qA1	chr14-6587069-53079320	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.200617291	sgMsh2	cell line
chr17	7281843	7281843	G	A	ENSMUST00000024575.7	1	ENSMUSG00000023809	missense	V/I	384	Rps6ka2	ENSMUST00000024575.7:c.1150G>A	ENSMUSP00000024575.6:p.Val384Ile	H-2-Kb	9	3	9	FSFVASSLI	FSFVASSLV	NetMHCpan	244.4	306.4	1.254	64	0.047	315.619	311.354	0.986	222.64	282.01	306.4	244.4	316.3078717	349.2287585	616.9500447	637.1621954	22-1_par	2.214285714	2.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.059	64	0	0	NA	17qA1	chr17-6996132-8130601	4	3	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.257313482	sgMsh2	cell line
chr16	17895029	17895029	G	A	ENSMUST00000046937.3	NA	ENSMUSG00000041566	missense	R/H	226	Tssk1	ENSMUST00000046937.3:c.677G>A	ENSMUSP00000040302.2:p.Arg226His	H-2-Kb	9	4	8	SNIKKMLHI	SNIKKMLRI	NetMHCpan	292.2	317	1.085	118	0.144	396.852	365.143	0.92	296.56	329.99	317	292.2	503.6281538	543.3879457	413.2853397	463.713778	22-1_par	0.528571429	0.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.161	118	0	0	NA	16qA3	chr16-4630421-97886207	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.70216052	sgMsh2	cell line
chr16	22951181	22951181	T	G	ENSMUST00000023590.8	1	ENSMUSG00000022877	missense	L/R	20	Hrg	ENSMUST00000023590.8:c.59T>G	ENSMUSP00000023590.8:p.Leu20Arg	H-2-Kb	9	7	5	TTALRLVTL	TTALLLVTL	SMMPMBEC	325.274	871.465	2.679	155	0.161	428.259	1177.29	2.749	1653.47	498.33	1467.2	506.2	887.3807432	358.1871488	871.4651012	325.2744865	22-1_par	1.742857143	1.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.17	155	0	0	NA	16qB1	chr16-4630421-97886207	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.741411729	sgMsh2	cell line
chr14	50515857	50515857	A	G	ENSMUST00000217437.1	5	ENSMUSG00000068431	missense	I/V	218	Olfr742	ENSMUST00000217437.1:c.652A>G	ENSMUSP00000150814.1:p.Ile218Val	H-2-Kb	9	11	1	VMGTYILVL	IMGTYILVL	SMMPMBEC	138.436	183.337	1.324	292	0.062	246.729	307.037	1.244	640.53	514.92	363.4	323.2	250.6744092	170.2589693	183.3369491	138.4363053	22-1_par	1.985714286	1.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.068	292	0	0	NA	14qC1	chr14-6587069-53079320	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.296564692	sgMsh2	cell line
chr14	54958710	54958710	G	A	ENSMUST00000081857.13	1	ENSMUSG00000040752	missense	A/V	544	Myh6	ENSMUST00000081857.13:c.1631C>T	ENSMUSP00000080538.6:p.Ala544Val	H-2-Kb	9	6	6	CMFPKVSDM	CMFPKASDM	SMM	308.397	331.979	1.076	157	0.083	429.784	577.658	1.344	803.17	586.93	649.2	467.6	331.9785319	308.3968972	506.1159219	391.9674468	22-1_par	-0.128571429	0.728571429	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.076	157	0	0	NA	14qC3	chr14-53294676-123291781	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.331454655	sgMsh2	cell line
chr14	61211277	61211277	A	G	ENSMUST00000119943.7	5	ENSMUSG00000048279	missense	I/V	3591	Sacs	ENSMUST00000119943.7:c.10771A>G	ENSMUSP00000113377.1:p.Ile3591Val	H-2-Kb	9	5	7	VEFLRNVGL	VEFLRNIGL	SMMPMBEC	167.591	185.033	1.104	158	0.076	437.079	451.322	1.033	707.61	675.04	1054.2	1003.7	195.0338527	199.1177609	185.033345	167.5907328	22-1_par	0.885714286	0.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.08	158	0	0	NA	14qD1	chr14-53294676-123291781	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.348899637	sgMsh2	cell line
chr18	63082917	63082917	A	G	ENSMUST00000047480.12	1	ENSMUSG00000041482	missense	I/T	1225	Piezo2	ENSMUST00000047480.12:c.3674T>C	ENSMUSP00000040019.5:p.Ile1225Thr	H-2-Db	9	4	8	GAYFNDNTI	GAYFNDNII	NetMHC	31.79	118.45	3.726	215	0.056	53.707	168.016	3.128	118.45	31.79	171	54.5	198.8932297	59.51411776	165.0326981	52.91392775	22-1_par	-0.742857143	-0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.06	215	0	0	NA	18qE1	chr18-5046666-88869177	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.261674728	sgMsh2	cell line
chr18	63674070	63674070	A	C	ENSMUST00000237004.1	NA	ENSMUSG00000024583	missense	F/L	238	Txnl1	ENSMUST00000237004.1:c.714T>G	ENSMUSP00000158375.1:p.Phe238Leu	H-2-Db	9	11	1	LQNVNSVTL	FQNVNSVTL	NetMHC	57.73	9.51	0.165	155	0.032	137.831	39.037	0.283	9.51	57.73	21.5	108.7	56.57440564	166.9629079	61.59848061	178.4719628	22-1_par	0.528571429	0.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.054	155	0	0	NA	18qE1	chr18-5046666-88869177	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.235507255	sgMsh2	cell line
chr17	30747255	30747255	G	A	ENSMUST00000236140.1	NA	ENSMUSG00000033826	missense	R/H	2473	Dnah8	ENSMUST00000236140.1:c.7418G>A	ENSMUSP00000157469.1:p.Arg2473His	H-2-Db	9	4	8	LTLANGDHI	LTLANGDRI	NetMHCpan	40	117.2	2.93	243	0.053	121.553	319.335	2.627	318.36	59.21	117.2	40	352.8742759	228.3599819	320.3096331	183.8950334	22-1_par	-0.071428571	0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.061	243	0	0	NA	17qA3.3	chr17-8169809-94740433	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.266035973	sgMsh2	cell line
chr2	35085337	35085337	AT	A	ENSMUST00000045776.4	1	ENSMUSG00000035875	FS	K/X	283	AI182371	ENSMUST00000045776.4:c.849del	ENSMUSP00000037754.5:p.Lys283AsnfsTer22	H-2-Db	9	7	5	PMIKNAVTM	NA	SMM	86.222	NA	NA	249	0.024	120.809	NA	NA	NA	111.43	NA	338.5	NA	86.2223787	NA	130.1877136	22-1_par	0.614285714	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.033	249	0	0	NA	2qB	chr2-3197272-76814467	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.1439211	sgMsh2	cell line
chr19	13780723	13780723	A	G	ENSMUST00000219412.1	NA	ENSMUSG00000048356	missense	Y/C	37	Olfr1496	ENSMUST00000219412.1:c.110A>G	ENSMUSP00000151386.1:p.Tyr37Cys	H-2-Db	9	8	4	LSMCLVTVI	LSMYLVTVI	NetMHC	306.17	1144.05	3.737	304	0.036	430.416	928.961	2.158	1144.05	306.17	1155.8	518.5	713.8714278	414.591124	683.2348335	446.2415444	22-1_par	2.914285714	2.914285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.041	304	0	0	NA	19qA	chr19-6054831-61227351	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.178811064	sgMsh2	cell line
chr2	66323335	66323335	C	A	ENSMUST00000112366.7	5	ENSMUSG00000064329	missense	S/I	718	Scn1a	ENSMUST00000112366.7:c.2153G>T	ENSMUSP00000107985.1:p.Ser718Ile	H-2-Db	9	9	3	IAIILTNTV	IASILTNTV	NetMHC	352.08	13281.94	37.724	257	0.058	494.273	6028.934	12.198	13281.94	352.08	8206.9	790.8	3520.626876	473.8272134	3850.9688	514.7187632	22-1_par	1.728571429	2.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.063	257	0	0	NA	2qC1.3	chr2-3197272-76814467	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.274758464	sgMsh2	cell line
chr18	9213061	9213061	T	A	ENSMUST00000041080.6	NA	ENSMUSG00000036904	missense	Y/N	48	Fzd8	ENSMUST00000041080.6:c.142T>A	ENSMUSP00000039660.5:p.Tyr48Asn	H-2-Db	10	7	5	KGIGNNYTYM	KGIGYNYTYM	NetMHC	29.77	43.43	1.459	186	0.059	169.743	362.929	2.138	43.43	29.77	103.2	97.8	622.6586131	241.6851686	702.5382911	259.8184574	22-1_par	-1.257142857	-0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.057	186	0	0	NA	18qA1	chr18-5046666-88869177	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.248590992	sgMsh2	cell line
chr18	65996705	65996705	T	A	ENSMUST00000236866.1	NA	ENSMUSG00000041891	missense	T/S	214	Lman1	ENSMUST00000236866.1:c.640A>T	ENSMUSP00000158495.1:p.Thr214Ser	H-2-Kb	8	10	2	ISYYQKTL	ITYYQKTL	NetMHCpan	17.2	26.4	1.535	221	0.05	33.937	64.748	1.908	50.11	20.04	26.4	17.2	79.38528349	47.83436356	101.3304567	60.63732022	22-1_par	-1.1	-1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.051	221	0	0	NA	18qE1	chr18-5046666-88869177	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.222423519	sgMsh2	cell line
chr18	22524117	22524117	C	A	ENSMUST00000097655.3	5	ENSMUSG00000045215	missense	P/H	1728	Asxl3	ENSMUST00000097655.3:c.5183C>A	ENSMUSP00000095260.3:p.Pro1728His	H-2-Kb	8	7	5	INRLHLPL	INRLPLPL	NetMHC	32.15	459.04	14.278	62	0.081	47.769	305.527	6.396	459.04	32.15	282.4	53.2	236.4503711	42.33894187	328.6548155	57.50955406	22-1_par	-0.2	-0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.12	62	0	0	NA	18qA2	chr18-5046666-88869177	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.523349456	sgMsh2	cell line
chr17	74652684	74652684	A	C	ENSMUST00000180037.7	1	ENSMUSG00000024073	missense	K/T	3868	Birc6	ENSMUST00000180037.7:c.11603A>C	ENSMUSP00000136329.1:p.Lys3868Thr	H-2-Kb	8	8	4	AGHTFRTL	AGHKFRTL	NetMHC	59.53	76.69	1.288	267	0.303	117.147	153.565	1.311	76.69	59.53	161	121.9	166.241711	126.9813676	146.1302072	112.3931906	22-1_par	-0.414285714	-0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.298	267	0	0	NA	17qE2	chr17-8169809-94740433	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	1	sgMsh2	cell line
chr19	13780723	13780723	A	G	ENSMUST00000219412.1	NA	ENSMUSG00000048356	missense	Y/C	37	Olfr1496	ENSMUST00000219412.1:c.110A>G	ENSMUSP00000151386.1:p.Tyr37Cys	H-2-Kb	8	5	7	VIFLSMCL	VIFLSMYL	SMM	52.329	17.169	0.328	304	0.036	65.282	17.334	0.266	10.44	64.23	17.5	81.3	17.16880231	52.32870654	23.91883374	66.33458249	22-1_par	2.642857143	2.7	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.041	304	0	0	NA	19qA	chr19-6054831-61227351	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.178811064	sgMsh2	cell line
chr19	29626954	29626954	A	G	ENSMUST00000159692.7	1	ENSMUSG00000046324	missense	S/P	475	Ermp1	ENSMUST00000159692.7:c.1423T>C	ENSMUSP00000124881.1:p.Ser475Pro	H-2-Kb	8	5	7	ISLIGQPL	ISLIGQSL	NetMHC	82.55	340.14	4.12	293	0.044	128.041	279.573	2.183	340.14	82.55	280.7	136.3	278.4453695	134.8155538	253.9451951	121.2662646	22-1_par	0.828571429	0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.043	293	0	0	NA	19qC1	chr19-6054831-61227351	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.187533555	sgMsh2	cell line
chr18	9213061	9213061	T	A	ENSMUST00000041080.6	NA	ENSMUSG00000036904	missense	Y/N	48	Fzd8	ENSMUST00000041080.6:c.142T>A	ENSMUSP00000039660.5:p.Tyr48Asn	H-2-Kb	8	9	3	IGNNYTYM	IGYNYTYM	NetMHC	89.71	2.95	0.033	186	0.059	145.631	7.49	0.051	2.95	89.71	4.8	173.2	10.17981768	144.4574685	10.39297781	146.8047136	22-1_par	-1.257142857	-0.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.057	186	0	0	NA	18qA1	chr18-5046666-88869177	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.248590992	sgMsh2	cell line
chr18	63674070	63674070	A	C	ENSMUST00000237004.1	NA	ENSMUSG00000024583	missense	F/L	238	Txnl1	ENSMUST00000237004.1:c.714T>G	ENSMUSP00000158375.1:p.Phe238Leu	H-2-Kb	8	4	8	VPLRYVKL	VPLRYVKF	SMM	45.472	739.163	16.255	155	0.032	69.115	1052.521	15.229	1365.88	92.02	1494.9	209.8	739.1626265	45.4715753	580.4168341	46.21042896	22-1_par	0.071428571	0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.054	155	0	0	NA	18qE1	chr18-5046666-88869177	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.235507255	sgMsh2	cell line
chr2	36568909	36568909	T	A	ENSMUST00000215879.1	5	ENSMUSG00000096822	missense	F/I	104	Olfr344	ENSMUST00000215879.1:c.310T>A	ENSMUSP00000151202.1:p.Phe104Ile	H-2-Kb	8	5	7	VSQVYFII	VSQVYFFI	NetMHCpan	98.5	63.3	0.643	202	0.04	151.032	60.805	0.403	47.72	112.07	63.3	98.5	58.30959165	189.9940498	63.788149	226.8506354	22-1_par	1.485714286	1.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.044	202	0	0	NA	2qB	chr2-3197272-76814467	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.191894801	sgMsh2	cell line
chr2	25350481	25350481	T	G	ENSMUST00000042390.4	1	ENSMUSG00000036646	missense	F/L	631	Man1b1	ENSMUST00000042390.4:c.1893T>G	ENSMUSP00000036996.4:p.Phe631Leu	H-2-Kb	8	4	8	LKYLYLLL	LKYLYLLF	SMM	67.568	1098.348	16.255	101	0.129	72.284	1011.074	13.988	1255.14	117.06	923.8	77	1098.348092	67.56783445	848.6722465	67.56783445	22-1_par	1.242857143	1.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.148	101	0	0	NA	2qA3	chr2-3197272-76814467	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.645464329	sgMsh2	cell line
chr2	25503133	25503133	G	A	ENSMUST00000015239.9	1	ENSMUSG00000015095	missense	A/T	179	Fbxw5	ENSMUST00000015239.9:c.535G>A	ENSMUSP00000015239.3:p.Ala179Thr	H-2-Kb	8	5	7	ISLDSFTL	ISLDSFAL	NetMHCpan	109.7	73.2	0.667	245	0.086	159.094	89.409	0.562	37.98	142.5	73.2	109.7	105.6185011	175.6871509	139.2323008	219.1492557	22-1_par	0.657142857	0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.089	245	0	0	NA	2qA3	chr2-3197272-76814467	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.388150846	sgMsh2	cell line
chr2	36568909	36568909	T	A	ENSMUST00000215879.1	5	ENSMUSG00000096822	missense	F/I	104	Olfr344	ENSMUST00000215879.1:c.310T>A	ENSMUSP00000151202.1:p.Phe104Ile	H-2-Kb	8	10	2	FIIVFGSI	FFIVFGSI	NetMHC	167.52	680.64	4.063	202	0.04	191.949	490.534	2.556	680.64	167.52	880.6	207.4	300.4277187	213.6682534	270.8569601	176.4980859	22-1_par	2.757142857	2.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.044	202	0	0	NA	2qB	chr2-3197272-76814467	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.191894801	sgMsh2	cell line
chr19	7284514	7284514	T	A	ENSMUST00000165965.7	1	ENSMUSG00000024969	missense	Y/F	351	Mark2	ENSMUST00000165965.7:c.1052A>T	ENSMUSP00000131684.1:p.Tyr351Phe	H-2-Kb	8	7	5	VGQRFNEV	VGQRYNEV	NetMHC	171.17	232.17	1.356	195	0.056	271.938	333.787	1.227	232.17	171.17	735.3	476.8	290.2284617	236.4503711	377.3462166	307.4255792	22-1_par	-1.2	-1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.062	195	0	0	NA	19qA	chr19-6054831-61227351	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.270397219	sgMsh2	cell line
chr2	79279113	79279113	T	G	ENSMUST00000099972.4	1	ENSMUSG00000027009	missense	S/A	219	Itga4	ENSMUST00000099972.4:c.655T>G	ENSMUSP00000099718.3:p.Ser219Ala	H-2-Kb	8	10	2	SAYWTGTV	SSYWTGTV	NetMHCpan	191.1	98.2	0.514	130	0.085	351.563	143.879	0.409	80	217.01	98.2	191.1	189.5570756	486.1160944	207.8452003	549.2119775	22-1_par	0.285714286	0.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.094	130	0	0	NA	2qC3	chr2-76867311-181807525	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.409957074	sgMsh2	cell line
chr19	29717156	29717156	T	A	ENSMUST00000175726.7	5	ENSMUSG00000046138	missense	I/F	1591	9930021J03Rik	ENSMUST00000175726.7:c.4770A>T	ENSMUSP00000135696.1:p.Ile1591Phe	H-2-Kb	8	7	5	SSVLFSTT	SSVLISTT	NetMHC	256	13622.36	53.212	353	0.017	359.271	11044.782	30.742	13622.36	256	7702.6	379.9	15694.22953	497.4391928	8467.203545	338.6413603	22-1_par	1.114285714	1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.022	353	0	0	NA	19qC1	chr19-6054831-61227351	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.0959474	sgMsh2	cell line
chr18	84094867	84094867	A	T	ENSMUST00000060223.3	1	ENSMUSG00000049090	missense	N/Y	223	Zadh2	ENSMUST00000060223.3:c.667A>T	ENSMUSP00000052544.2:p.Asn223Tyr	H-2-Kb	8	10	2	IYYRTEPV	INYRTEPV	NetMHC	283.25	43.81	0.155	141	0.057	454.777	90.181	0.198	43.81	283.25	52.5	397	128.1563117	596.6779652	127.8615603	512.5544401	22-1_par	-1.242857143	-1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.058	141	0	0	NA	18qE4	chr18-5046666-88869177	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.252952237	sgMsh2	cell line
chr2	19494156	19494156	C	T	ENSMUST00000062060.4	1	ENSMUSG00000026734	missense	R/Q	342	4921504E06Rik	ENSMUST00000062060.4:c.1025G>A	ENSMUSP00000058720.4:p.Arg342Gln	H-2-Kb	8	7	5	THFLQPPL	THFLRPPL	SMM	143.133	266.526	1.862	116	0.052	241.197	225.88	0.936	201.3	308.55	183.5	277.4	266.5262568	143.1330745	250.4609364	204.9934573	22-1_par	0.071428571	0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.062	116	0	0	NA	2qA3	chr2-3197272-76814467	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.270397219	sgMsh2	cell line
chr19	12210040	12210040	T	C	ENSMUST00000213759.1	5	ENSMUSG00000094133	missense	V/A	158	Olfr1431	ENSMUST00000213759.1:c.473T>C	ENSMUSP00000150967.1:p.Val158Ala	H-2-Kb	8	11	1	ASQICALL	VSQICALL	SMMPMBEC	271.481	79.203	0.292	651	0.011	324.384	76.136	0.235	48.83	373.51	163.3	782.3	73.07015019	275.2580317	79.2027024	271.4813499	22-1_par	1.728571429	1.728571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.013	651	0	0	NA	19qA	chr19-6054831-61227351	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.056696191	sgMsh2	cell line
chr2	37068836	37068836	T	A	ENSMUST00000216706.2	5	ENSMUSG00000083361	missense	F/Y	177	Olfr360	ENSMUST00000216706.2:c.530T>A	ENSMUSP00000149581.1:p.Phe177Tyr	H-2-Kb	8	7	5	VTHFYCDI	VTHFFCDI	NetMHCpan	125.9	80.9	0.643	562	0.027	337.717	275.14	0.815	370.81	399.45	80.9	125.9	285.5880296	350.5419514	264.691503	324.8927349	22-1_par	0.157142857	0.157142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.032	562	0	0	NA	2qB	chr2-3197272-76814467	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.139559855	sgMsh2	cell line
chr17	25834931	25834931	T	C	ENSMUST00000026831.13	1	ENSMUSG00000025735	missense	I/V	326	Rhbdl1	ENSMUST00000026831.13:c.976A>G	ENSMUSP00000026831.6:p.Ile326Val	H-2-Kb	8	5	7	VSMGLTVL	VSMGLTIL	NetMHCpan	232.7	237.5	1.021	65	0.123	332.3	526.081	1.583	491.45	462.3	237.5	232.7	579.0819124	357.8821189	560.7121928	306.71852	22-1_par	1.685714286	1.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.118	65	0	0	NA	17qA3.3	chr17-8169809-94740433	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.514626965	sgMsh2	cell line
chr17	74652684	74652684	A	C	ENSMUST00000180037.7	1	ENSMUSG00000024073	missense	K/T	3868	Birc6	ENSMUST00000180037.7:c.11603A>C	ENSMUSP00000136329.1:p.Lys3868Thr	H-2-Kb	8	10	2	HTFRTLHL	HKFRTLHL	NetMHCpan	250.9	5887.1	23.464	267	0.303	311.807	3952.129	12.675	7109.9	477.89	5887.1	250.9	2017.158386	367.908651	1468.047136	255.7054591	22-1_par	0.185714286	0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.298	267	0	0	NA	17qE2	chr17-8169809-94740433	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	1	sgMsh2	cell line
chr18	63674070	63674070	A	C	ENSMUST00000237004.1	NA	ENSMUSG00000024583	missense	F/L	238	Txnl1	ENSMUST00000237004.1:c.714T>G	ENSMUSP00000158375.1:p.Phe238Leu	H-2-Kb	9	3	9	IVPLRYVKL	IVPLRYVKF	NetMHC	21.45	97.34	4.538	155	0.032	42.867	110.483	2.577	97.34	21.45	178.9	31	123.6260519	73.30101696	94.67820161	54.73309412	22-1_par	0.071428571	1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.054	155	0	0	NA	18qE1	chr18-5046666-88869177	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.235507255	sgMsh2	cell line
chr2	25503133	25503133	G	A	ENSMUST00000015239.9	1	ENSMUSG00000015095	missense	A/T	179	Fbxw5	ENSMUST00000015239.9:c.535G>A	ENSMUSP00000015239.3:p.Ala179Thr	H-2-Kb	9	5	7	ISLDSFTLL	ISLDSFALL	NetMHC	26.36	10.5	0.398	245	0.086	70.733	50.031	0.707	10.5	26.36	17.6	29.2	85.7254947	114.5803119	82.46126636	112.2664526	22-1_par	1.314285714	1.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.089	245	0	0	NA	2qA3	chr2-3197272-76814467	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.388150846	sgMsh2	cell line
chr2	36568909	36568909	T	A	ENSMUST00000215879.1	5	ENSMUSG00000096822	missense	F/I	104	Olfr344	ENSMUST00000215879.1:c.310T>A	ENSMUSP00000151202.1:p.Phe104Ile	H-2-Kb	9	5	7	VSQVYFIIV	VSQVYFFIV	NetMHC	74.61	78.88	1.057	202	0.04	105.653	98.065	0.928	78.88	74.61	71.1	84.8	117.2492302	126.5056726	156.4047722	155.6861575	22-1_par	2.2	2.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.044	202	0	0	NA	2qB	chr2-3197272-76814467	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.191894801	sgMsh2	cell line
chr17	37672293	37672293	A	G	ENSMUST00000216551.1	5	ENSMUSG00000080990	missense	N/S	90	Olfr118	ENSMUST00000216551.1:c.269A>G	ENSMUSP00000151212.1:p.Asn90Ser	H-2-Kb	9	4	8	VIPKMLQSL	VIPKMLQNL	NetMHC	116.06	40.95	0.353	446	0.036	250.163	178.922	0.715	40.95	116.06	117.9	221	239.9440583	279.3251239	329.7995054	370.8941642	22-1_par	-0.042857143	0.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.04	446	0	0	NA	17qB1	chr17-8169809-94740433	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.174449819	sgMsh2	cell line
chr19	10916837	10916837	A	G	ENSMUST00000025641.1	1	ENSMUSG00000024734	missense	V/A	366	Zp1	ENSMUST00000025641.1:c.1097T>C	ENSMUSP00000025641.1:p.Val366Ala	H-2-Kb	9	5	7	SAFRLHARC	SAFRLHVRC	NetMHC	122.6	700.88	5.717	72	0.056	364.629	723.02	1.983	700.88	122.6	528	179.4	1244.829868	863.1971544	745.1607995	549.8573061	22-1_par	-0.185714286	0.242857143	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.072	72	0	0	NA	19qA	chr19-6054831-61227351	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.314009674	sgMsh2	cell line
chr18	84558525	84558525	GA	G	ENSMUST00000125763.2	5	ENSMUSG00000048410	FS	S/X	1488	Zfp407	ENSMUST00000125763.2:c.4462del	ENSMUSP00000118361.1:p.Ser1488ArgfsTer20	H-2-Kb	9	11	1	RNRIYFCIL	NA	NetMHCpan	54.1	NA	NA	136	0.066	184.607	NA	NA	NA	154.87	NA	54.1	NA	214.3433431	NA	242.2423104	22-1_par	1.757142857	1.757142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.08	136	0	0	NA	18qE4	chr18-5046666-88869177	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.348899637	sgMsh2	cell line
chr19	13780723	13780723	A	G	ENSMUST00000219412.1	NA	ENSMUSG00000048356	missense	Y/C	37	Olfr1496	ENSMUST00000219412.1:c.110A>G	ENSMUSP00000151386.1:p.Tyr37Cys	H-2-Kb	9	5	7	VIFLSMCLV	VIFLSMYLV	NetMHC	189.79	142.88	0.753	304	0.036	236.517	220.311	0.931	142.88	189.79	433.8	334.2	187.5469475	212.8678139	253.0754397	260.1656766	22-1_par	2.6	2.7	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.041	304	0	0	NA	19qA	chr19-6054831-61227351	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.178811064	sgMsh2	cell line
chr17	45666116	45666116	A	G	ENSMUST00000113523.8	1	ENSMUSG00000036026	missense	F/L	442	Tmem63b	ENSMUST00000113523.8:c.1324T>C	ENSMUSP00000109151.2:p.Phe442Leu	H-2-Kb	9	6	6	INVVLLILL	INVVLFILL	SMM	211.89	95.304	0.45	169	0.041	282.139	96.052	0.34	82.37	310.62	96.8	546.2	95.3037523	211.8897751	108.2056654	253.6588388	22-1_par	4.014285714	4.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.052	169	0	0	NA	17qB3	chr17-8169809-94740433	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.226784764	sgMsh2	cell line
chr19	13102776	13102776	A	G	ENSMUST00000215160.1	5	ENSMUSG00000062844	missense	F/S	176	Olfr1458	ENSMUST00000215160.1:c.527T>C	ENSMUSP00000149865.1:p.Phe176Ser	H-2-Kb	9	6	6	VVHHFSCDI	VVHHFFCDI	NetMHC	319.73	139.45	0.436	412	0.019	446.132	151.049	0.339	139.45	319.73	39.3	394.4	174.6264398	497.86317	162.6484766	575.7712826	22-1_par	-0.128571429	0.928571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.024	412	0	0	NA	19qA	chr19-6054831-61227351	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.104669891	sgMsh2	cell line
chr19	47082607	47082607	A	G	ENSMUST00000026027.6	1	ENSMUSG00000025049	missense	N/S	790	Taf5	ENSMUST00000026027.6:c.2369A>G	ENSMUSP00000026027.5:p.Asn790Ser	H-2-Kb	9	5	7	LHFTRRSLV	LHFTRRNLV	SMMPMBEC	357.479	430.775	1.205	154	0.039	391.151	550.676	1.408	636.72	376.69	1211.6	789.4	464.6329446	405.6112574	430.7745129	357.4785601	22-1_par	0.042857143	0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.05	154	0	0	NA	19qC3	chr19-6054831-61227351	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.218062273	sgMsh2	cell line
chr18	65996705	65996705	T	A	ENSMUST00000236866.1	NA	ENSMUSG00000041891	missense	T/S	214	Lman1	ENSMUST00000236866.1:c.640A>T	ENSMUSP00000158495.1:p.Thr214Ser	H-2-Kb	9	11	1	SYYQKTLTV	TYYQKTLTV	SMM	359.84	473.271	1.315	221	0.05	404.676	544.711	1.346	616.15	403.61	684.5	479.2	473.271116	359.8404656	440.8085403	405.7420321	22-1_par	-0.3	-0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.051	221	0	0	NA	18qE1	chr18-5046666-88869177	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.222423519	sgMsh2	cell line
chr17	25834931	25834931	T	C	ENSMUST00000026831.13	1	ENSMUSG00000025735	missense	I/V	326	Rhbdl1	ENSMUST00000026831.13:c.976A>G	ENSMUSP00000026831.6:p.Ile326Val	H-2-Kb	9	11	1	VLRSYEERL	ILRSYEERL	NetMHC	418.2	506.77	1.212	65	0.123	455.219	587.096	1.29	506.77	418.2	550.3	514.2	623.8928378	423.7502818	644.5401859	486.6872848	22-1_par	-2.042857143	-0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.118	65	0	0	NA	17qA3.3	chr17-8169809-94740433	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.514626965	sgMsh2	cell line
chr18	62950109	62950109	C	T	ENSMUST00000236135.1	NA	ENSMUSG00000071847	missense	P/S	337	Apcdd1	ENSMUST00000236135.1:c.1009C>T	ENSMUSP00000157539.1:p.Pro337Ser	H-2-Kb	9	11	1	STFTIYARG	PTFTIYARG	SMMPMBEC	339.821	867.461	2.553	171	0.053	483.86	4404.675	9.103	9771.29	528.64	7581.6	460.6	1227.750162	507.1191374	867.4610828	339.8208329	22-1_par	0.314285714	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.06	171	0	0	NA	18qE1	chr18-5046666-88869177	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.261674728	sgMsh2	cell line
chr2	130240151	130240151	T	G	ENSMUST00000077988.7	1	ENSMUSG00000060332	missense	L/R	418	Tmc2	ENSMUST00000077988.7:c.1253T>G	ENSMUSP00000077139.1:p.Leu418Arg	H-2-Db	9	5	7	RVLANFRIL	RVLANFLIL	NetMHCpan	289.8	109.9	0.379	229	0.253	480.144	279.184	0.581	390.31	1680.39	109.9	289.8	289.4809572	451.4607513	268.8871203	508.8268262	22-1_par	1.242857143	1.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.248	229	0	0	NA	2qF1	chr2-76867311-181807525	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	1	sgMsh2	cell line
chr2	112091952	112091952	A	C	ENSMUST00000207976.3	5	ENSMUSG00000074945	missense	F/V	250	Olfr1314	ENSMUST00000207976.3:c.748T>G	ENSMUSP00000146418.2:p.Phe250Val	H-2-Kb	8	8	4	VVLVFGPL	VVLFFGPL	NetMHC	3.26	5.13	1.574	591	0.215	5.603	5.64	1.007	5.13	3.26	5.3	5.9	5.980534499	5.92570463	6.008139392	5.305667136	22-1_par	2.4	2.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.214	591	0	0	NA	2qE3	chr2-76867311-181807525	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.93330653	sgMsh2	cell line
chr2	86829093	86829093	GT	G	ENSMUST00000217509.1	5	ENSMUSG00000044213	FS	F/X	114	Olfr1094	ENSMUST00000217509.1:c.342del	ENSMUSP00000148902.1:p.Leu115SerfsTer22	H-2-Kb	8	7	6	VTEMFSLL	VTEMFLFV	NetMHC	31.4	1360.96	43.343	291	0.021	44.412	671.997	15.131	1360.96	31.4	1139	53.2	204.9934573	53.30156983	149.1900983	35.62377999	22-1_par	1.042857143	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.026	291	0	0	NA	2qD	chr2-76867311-181807525	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.113392382	sgMsh2	cell line
chr3	152374779	152374779	T	C	ENSMUST00000197748.4	1	ENSMUSG00000025437	missense	Y/H	516	Usp33	ENSMUST00000197748.4:c.1546T>C	ENSMUSP00000142708.1:p.Tyr516His	H-2-Kb	8	5	7	IAFFMEHV	IAFFMEYV	NetMHCpan	43.5	55.5	1.276	153	0.085	142.65	162.947	1.142	135.9	90.88	55.5	43.5	189.9940498	198.9481935	199.8664966	194.4195797	22-1_par	0.971428571	1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.087	153	0	0	NA	3qH3	chr3-114205493-159913826	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.379428356	sgMsh2	cell line
chr3	62594965	62594965	CT	C	ENSMUST00000058535.5	1	ENSMUSG00000043441	FS	K/X	490	Gpr149	ENSMUST00000058535.5:c.1469del	ENSMUSP00000060893.5:p.Lys490ArgfsTer94	H-2-Kb	8	67	0	VGWLFPYA	NA	NetMHCpan	76.5	NA	NA	224	0.049	104.706	NA	NA	NA	94.4	NA	76.5	NA	157.666708	NA	115.0111643	22-1_par	0.6	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.068	224	0	0	NA	3qE1	chr3-10012637-88863885	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.296564692	sgMsh2	cell line
chr4	14506455	14506455	CA	C	ENSMUST00000042221.13	1	ENSMUSG00000040569	FS	F/X	631	Slc26a7	ENSMUST00000042221.13:c.1893del	ENSMUSP00000041789.7:p.Phe631LeufsTer8	H-2-Kb	8	9	3	IFLTRYLL	NA	NetMHC	150.07	NA	NA	225	0.058	295.219	NA	NA	NA	150.07	NA	234.2	NA	356.2377999	NA	397.8689062	22-1_par	1.1	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0578	225	0	0	NA	4qA1	chr4-3554421-60070040	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.252079988	sgMsh2	cell line
chr2	136880442	136880442	T	C	ENSMUST00000110089.8	1	ENSMUSG00000027274	missense	Q/R	265	Mkks	ENSMUST00000110089.8:c.794A>G	ENSMUSP00000105716.2:p.Gln265Arg	H-2-Kb	8	5	7	VVVAHYRV	VVVAHYQV	NetMHC	156.67	302.77	1.933	220	0.05	214.734	346.241	1.612	302.77	156.67	334.6	222.1	357.8821189	207.3671696	390.6069803	240.8463117	22-1_par	0.771428571	0.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.053	220	0	0	NA	2qF3	chr2-76867311-181807525	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.23114601	sgMsh2	cell line
chr2	89325547	89325547	A	T	ENSMUST00000213860.1	3	ENSMUSG00000075092	missense	V/D	211	Olfr1232	ENSMUST00000213860.1:c.632T>A	ENSMUSP00000150860.1:p.Val211Asp	H-2-Kb	8	6	6	CIIVFDLL	CIIVFVLL	SMM	158.03	66.03	0.418	185	0.043	205.908	81.198	0.394	84.28	193.17	438.8	316.2	66.02980276	158.0301673	78.11600059	218.6452264	22-1_par	2.871428571	2.871428571	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.051	185	0	0	NA	2qE1	chr2-76867311-181807525	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.222423519	sgMsh2	cell line
chr2	89249221	89249221	C	T	ENSMUST00000190757.2	NA	ENSMUSG00000099486	missense	V/I	158	Olfr1228	ENSMUST00000190757.2:c.472G>A	ENSMUSP00000139920.1:p.Val158Ile	H-2-Kb	8	11	1	ISWTGGFL	VSWTGGFL	SMMPMBEC	82.175	84.283	1.026	502	0.014	118.572	113.944	0.961	196.38	216.84	106.9	108.1	120.9873599	129.0446488	84.28300279	82.17505435	22-1_par	0.485714286	0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.016	502	0	0	NA	2qE1	chr2-76867311-181807525	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.069779927	sgMsh2	cell line
chr3	127815684	127815684	T	A	ENSMUST00000051737.7	3	ENSMUSG00000074238	missense	Q/L	96	Ap1ar	ENSMUST00000051737.7:c.287A>T	ENSMUSP00000059669.6:p.Gln96Leu	H-2-Kb	8	4	8	IQRQLALL	IQRQLALQ	SMM	166.242	6694.837	40.272	84	0.048	204.406	14159.418	69.271	24239.53	227.37	21624	402	6694.836882	166.241711	3263.923717	181.4429089	22-1_par	0.242857143	0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.069	84	0	0	NA	3qG2	chr3-114205493-159913826	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.300925937	sgMsh2	cell line
chr2	89325547	89325547	A	T	ENSMUST00000213860.1	3	ENSMUSG00000075092	missense	V/D	211	Olfr1232	ENSMUST00000213860.1:c.632T>A	ENSMUSP00000150860.1:p.Val211Asp	H-2-Kb	8	8	4	IVFDLLLV	IVFVLLLV	NetMHCpan	285.2	423.2	1.484	185	0.043	382.697	210.575	0.55	233.33	411.34	423.2	285.2	187.8192059	373.8866857	171.6880231	391.5074224	22-1_par	2.728571429	2.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.051	185	0	0	NA	2qE1	chr2-76867311-181807525	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.222423519	sgMsh2	cell line
chr4	62338526	62338526	G	C	ENSMUST00000084527.9	1	ENSMUSG00000066151	missense	A/G	202	Fkbp15	ENSMUST00000084527.9:c.605C>G	ENSMUSP00000081575.3:p.Ala202Gly	H-2-Kb	8	10	2	VGYTGWLL	VAYTGWLL	NetMHCpan	97.3	60.6	0.623	64	0.078	179.97	159.153	0.884	337.22	635.08	60.6	97.3	162.0839455	188.2521739	156.221211	171.6880231	22-1_par	0.557142857	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.113	64	0	0	NA	4qB3	chr4-60155018-112862394	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.492820738	sgMsh2	cell line
chr2	130240151	130240151	T	G	ENSMUST00000077988.7	1	ENSMUSG00000060332	missense	L/R	418	Tmc2	ENSMUST00000077988.7:c.1253T>G	ENSMUSP00000077139.1:p.Leu418Arg	H-2-Kb	8	6	6	VLANFRIL	VLANFLIL	NetMHCpan	168.4	200.6	1.191	229	0.253	377.523	506.858	1.343	1503.08	637.05	200.6	168.4	415.6616909	311.7022951	598.0534499	443.3431473	22-1_par	1.242857143	1.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.248	229	0	0	NA	2qF1	chr2-76867311-181807525	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	1	sgMsh2	cell line
chr2	112072130	112072130	A	C	ENSMUST00000216071.1	5	ENSMUSG00000074946	missense	V/G	151	Olfr1313	ENSMUST00000216071.1:c.452T>G	ENSMUSP00000148886.1:p.Val151Gly	H-2-Kb	8	6	6	ITAWVGGL	ITAWVVGL	SMM	370.459	363.697	0.982	290	0.028	450.257	424.348	0.942	805.01	821.39	292.9	409.9	363.6972355	370.458872	484.9980584	490.6140712	22-1_par	1.057142857	1.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.029	290	0	0	NA	2qE3	chr2-76867311-181807525	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.126476119	sgMsh2	cell line
chr2	111369453	111369453	T	G	ENSMUST00000216637.1	5	ENSMUSG00000109322	missense	F/V	274	Olfr1283	ENSMUST00000216637.1:c.820T>G	ENSMUSP00000150510.1:p.Phe274Val	H-2-Kb	9	10	2	VVYSVITPL	VFYSVITPL	NetMHCpan	16.9	51.4	3.041	665	0.009	45.626	77.076	1.689	64.18	24.86	51.4	16.9	89.97254391	66.39112074	118.3722765	85.75313379	22-1_par	1.157142857	2.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.013	665	0	0	NA	2qE3	chr2-76867311-181807525	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.056696191	sgMsh2	cell line
chr2	111645643	111645643	A	T	ENSMUST00000208284.2	5	ENSMUSG00000109487	missense	M/K	118	Olfr1298	ENSMUST00000208284.2:c.353T>A	ENSMUSP00000146343.1:p.Met118Lys	H-2-Kb	9	11	1	KAYDRYVAI	MAYDRYVAI	NetMHCpan	19.3	14.4	0.746	795	0.023	43.626	30.259	0.694	27.08	37.22	14.4	19.3	39.27443988	58.62866429	33.43874735	50.03224609	22-1_par	-0.014285714	-0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.024	795	0	0	NA	2qE3	chr2-76867311-181807525	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.104669891	sgMsh2	cell line
chr2	112091952	112091952	A	C	ENSMUST00000207976.3	5	ENSMUSG00000074945	missense	F/V	250	Olfr1314	ENSMUST00000207976.3:c.748T>G	ENSMUSP00000146418.2:p.Phe250Val	H-2-Kb	9	7	5	VVVLVFGPL	VVVLFFGPL	NetMHC	43.96	5.33	0.121	591	0.215	104.744	14.997	0.143	5.33	43.96	10.4	67.5	19.59340881	150.006473	22.09276129	141.9874632	22-1_par	2.4	3.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.214	591	0	0	NA	2qE3	chr2-76867311-181807525	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.93330653	sgMsh2	cell line
chr2	112072109	112072109	A	G	ENSMUST00000216071.1	5	ENSMUSG00000074946	missense	I/T	158	Olfr1313	ENSMUST00000216071.1:c.473T>C	ENSMUSP00000148886.1:p.Ile158Thr	H-2-Kb	9	11	1	TQLVFIVNL	IQLVFIVNL	NetMHC	74.57	32.49	0.436	245	0.029	244.489	145.096	0.593	32.49	74.57	51.9	85.1	238.292295	408.4228203	243.9214539	403.8778168	22-1_par	2.828571429	2.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.026	245	0	0	NA	2qE3	chr2-76867311-181807525	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.113392382	sgMsh2	cell line
chr4	62085965	62085965	T	A	ENSMUST00000107488.3	1	ENSMUSG00000066154	missense	M/L	104	Mup3	ENSMUST00000107488.3:c.310A>T	ENSMUSP00000103112.3:p.Met104Leu	H-2-Kb	9	8	4	IYYLNYDGF	IYYMNYDGF	SMM	81.117	97.748	1.205	57	0.07	93.472	99.294	1.062	100.84	93.35	287.1	435.5	97.74847712	81.11664876	95.99530659	93.5944292	22-1_par	-0.485714286	-0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.081	57	0	0	NA	4qB3	chr4-60155018-112862394	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.353260883	sgMsh2	cell line
chr3	154265477	154265477	T	C	ENSMUST00000089948.5	1	ENSMUSG00000028360	missense	Y/H	655	Slc44a5	ENSMUST00000089948.5:c.1963T>C	ENSMUSP00000087394.5:p.Tyr655His	H-2-Kb	9	4	8	LTLVFGSHM	LTLVFGSYM	NetMHC	113.12	180.92	1.599	448	0.105	257.728	295.924	1.148	180.92	113.12	188.1	128.1	403.747643	387.3557436	471.2485208	430.7745129	22-1_par	1.185714286	1.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.113	448	0	0	NA	3qH4	chr3-114205493-159913826	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.492820738	sgMsh2	cell line
chr2	89249221	89249221	C	T	ENSMUST00000190757.2	NA	ENSMUSG00000099486	missense	V/I	158	Olfr1228	ENSMUST00000190757.2:c.472G>A	ENSMUSP00000139920.1:p.Val158Ile	H-2-Kb	9	9	3	VMISWTGGF	VMVSWTGGF	SMM	103.779	151.743	1.462	502	0.014	143.152	218.418	1.526	213.35	132.4	477.5	255.6	151.7434661	103.7791239	223.4858341	153.9040328	22-1_par	0.585714286	1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.016	502	0	0	NA	2qE1	chr2-76867311-181807525	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.069779927	sgMsh2	cell line
chr3	19974960	19974960	T	C	ENSMUST00000108328.7	1	ENSMUSG00000003617	missense	Y/H	533	Cp	ENSMUST00000108328.7:c.1597T>C	ENSMUSP00000103964.1:p.Tyr533His	H-2-Kb	9	7	5	LSKMHYSGV	LSKMYYSGV	NetMHC	132.69	30.62	0.231	118	0.042	203.395	96.159	0.473	30.62	132.69	52.6	231.3	189.282298	236.1076181	139.7172407	175.4890407	22-1_par	-0.5	-0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.063	118	0	0	NA	3qA2	chr3-10012637-88863885	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.274758464	sgMsh2	cell line
chr2	88852313	88852313	A	G	ENSMUST00000213283.1	5	ENSMUSG00000061798	missense	Y/C	121	Olfr1204	ENSMUST00000213283.1:c.362A>G	ENSMUSP00000150111.1:p.Tyr121Cys	H-2-Kb	9	6	6	MAYDRCVAI	MAYDRYVAI	NetMHCpan	132.7	14.4	0.109	433	0.039	145.305	30.259	0.208	27.08	145.65	14.4	132.7	39.27443988	184.1238299	33.43874735	144.9606074	22-1_par	0.528571429	0.528571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.039	433	0	0	NA	2qE1	chr2-76867311-181807525	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.170088573	sgMsh2	cell line
chr2	136880442	136880442	T	C	ENSMUST00000110089.8	1	ENSMUSG00000027274	missense	Q/R	265	Mkks	ENSMUST00000110089.8:c.794A>G	ENSMUSP00000105716.2:p.Gln265Arg	H-2-Kb	9	6	6	VVAHYRVSL	VVAHYQVSL	NetMHCpan	101.6	89.4	0.88	220	0.05	176.422	183.673	1.041	156.43	151.82	89.4	101.6	210.91623	206.1151905	213.4273146	201.0249672	22-1_par	0	0.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.053	220	0	0	NA	2qF3	chr2-76867311-181807525	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.23114601	sgMsh2	cell line
chr2	112091952	112091952	A	C	ENSMUST00000207976.3	5	ENSMUSG00000074945	missense	F/V	250	Olfr1314	ENSMUST00000207976.3:c.748T>G	ENSMUSP00000146418.2:p.Phe250Val	H-2-Kb	9	8	4	VVLVFGPLI	VVLFFGPLI	NetMHCpan	140.2	132.6	0.946	591	0.215	201.324	238.516	1.185	242.01	178.72	132.6	140.2	235.0228021	223.9288243	260.1656766	293.9341186	22-1_par	2.442857143	2.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.214	591	0	0	NA	2qE3	chr2-76867311-181807525	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.93330653	sgMsh2	cell line
chr3	46446244	46446244	C	A	ENSMUST00000192793.5	3	ENSMUSG00000090919	missense	V/F	322	Pabpc4l	ENSMUST00000192793.5:c.964G>T	ENSMUSP00000141300.1:p.Val322Phe	H-2-Kb	9	3	9	SVFGSICRF	SVFGSICRV	NetMHC	300.29	358.11	1.193	147	0.034	468.275	568.878	1.215	358.11	300.29	500.8	458.9	636.9568317	477.6502397	728.1988689	562.6651281	22-1_par	0.985714286	1.714285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.046	147	0	0	NA	3qB	chr3-10012637-88863885	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.200617291	sgMsh2	cell line
chr2	86829093	86829093	GT	G	ENSMUST00000217509.1	5	ENSMUSG00000044213	FS	F/X	114	Olfr1094	ENSMUST00000217509.1:c.342del	ENSMUSP00000148902.1:p.Leu115SerfsTer22	H-2-Kb	9	6	7	CVTEMFSLL	CVTEMFLFV	SMM	261.282	1469.298	5.623	291	0.021	321.32	3487.553	10.854	4868.28	303.74	4618.7	338.9	1469.298381	261.2823058	2356.40535	488.9337312	22-1_par	1.042857143	1.1	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.026	291	0	0	NA	2qD	chr2-76867311-181807525	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.113392382	sgMsh2	cell line
chr2	160961928	160961928	G	A	ENSMUST00000039782.13	1	ENSMUSG00000057133	missense	R/W	2071	Chd6	ENSMUST00000039782.13:c.6211C>T	ENSMUSP00000042291.7:p.Arg2071Trp	H-2-Kb	9	10	2	VWAPTIAQL	VRAPTIAQL	SMM	313.408	1901.56	6.067	150	0.033	370.97	3332.971	8.984	4491.99	314.34	4640.5	427.6	1901.559854	313.4079437	2173.952246	498.023688	22-1_par	0.871428571	1.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.042	150	0	0	NA	2qH2	chr2-76867311-181807525	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.18317231	sgMsh2	cell line
chr2	90684017	90684017	T	C	ENSMUST00000057481.6	1	ENSMUSG00000051329	missense	I/T	103	Nup160	ENSMUST00000057481.6:c.308T>C	ENSMUSP00000059289.6:p.Ile103Thr	H-2-Kb	9	4	8	LKFQNYNTL	LKFQNYNIL	SMMPMBEC	328.284	387.481	1.18	255	0.024	371.615	587.375	1.581	787.27	401.95	1650.8	888.1	381.1623536	341.2793414	387.4806325	328.2842143	22-1_par	-0.842857143	-0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.028	255	0	0	NA	2qE1	chr2-76867311-181807525	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.122114873	sgMsh2	cell line
chr2	179924067	179924067	C	T	ENSMUST00000041618.12	1	ENSMUSG00000039117	missense	S/N	857	Taf4	ENSMUST00000041618.12:c.2570G>A	ENSMUSP00000038610.7:p.Ser857Asn	H-2-Kb	9	10	2	VNYVSHATQ	VSYVSHATQ	SMM	177.056	166.383	0.94	97	0.041	297.795	194.935	0.655	223.05	410.13	1923	2044.2	166.383402	177.0557356	166.8207233	185.4598909	22-1_par	-0.5	0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.055	97	0	0	NA	2qH4	chr2-76867311-181807525	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.239868501	sgMsh2	cell line
chr2	89325547	89325547	A	T	ENSMUST00000213860.1	3	ENSMUSG00000075092	missense	V/D	211	Olfr1232	ENSMUST00000213860.1:c.632T>A	ENSMUSP00000150860.1:p.Val211Asp	H-2-Kb	9	6	6	CIIVFDLLL	CIIVFVLLL	SMM	234.482	221.876	0.946	185	0.043	423.947	332.027	0.783	279.24	428.86	1828.8	1667.2	221.8758325	234.4822647	384.8132346	419.0347115	22-1_par	2.771428571	2.871428571	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.051	185	0	0	NA	2qE1	chr2-76867311-181807525	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.222423519	sgMsh2	cell line
chr4	62085965	62085965	T	A	ENSMUST00000107488.3	1	ENSMUSG00000066154	missense	M/L	104	Mup3	ENSMUST00000107488.3:c.310A>T	ENSMUSP00000103112.3:p.Met104Leu	H-2-Kb	9	11	1	LNYDGFNTF	MNYDGFNTF	SMM	179.519	159.996	0.891	57	0.07	232.23	176.93	0.762	346.86	451.89	170.1	280.7	159.9963223	179.5188262	183.7595844	183.7595844	22-1_par	-0.542857143	-0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.081	57	0	0	NA	4qB3	chr4-60155018-112862394	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.353260883	sgMsh2	cell line
chr4	52484050	52484050	G	A	ENSMUST00000102915.9	1	ENSMUSG00000028312	missense	A/T	1094	Smc2	ENSMUST00000102915.9:c.3280G>A	ENSMUSP00000099979.3:p.Ala1094Thr	H-2-Kb	9	10	2	VTLSLILSM	VALSLILSM	NetMHCpan	330.6	316.1	0.956	193	0.073	485.928	365.679	0.753	475.02	615.94	316.1	330.6	319.9705442	440.6664633	411.386466	531.1901339	22-1_par	2.314285714	2.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.063	193	0	0	NA	4qB2	chr4-3554421-60070040	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.274758464	sgMsh2	cell line
chr6	48976518	48976518	T	C	ENSMUST00000184917.5	3	ENSMUSG00000068536	missense	F/S	459	Doxl2	ENSMUST00000184917.5:c.1376T>C	ENSMUSP00000139012.1:p.Phe459Ser	H-2-Db	9	6	6	SALYNSDYI	SALYNFDYI	NetMHCpan	2.5	2.2	0.88	265	0.019	4.702	3.761	0.8	3.07	2.65	2.2	2.5	4.452664776	6.754916735	5.303590695	8.195397067	22-1_par	-0.3	-0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.029	265	0	0	NA	6qB2.3	chr6-3373003-129638907	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.126476119	sgMsh2	cell line
chr5	142992797	142992797	T	G	ENSMUST00000200607.4	1	ENSMUSG00000045078	missense	N/T	862	Rnf216	ENSMUST00000200607.4:c.2585A>C	ENSMUSP00000143705.1:p.Asn862Thr	H-2-Db	9	6	6	RPVFNTFPI	RPVFNNFPI	SMM	331.604	497.302	1.5	100	0.06	474.921	816.751	1.72	1706.13	603.03	1136.2	592.1	497.3017643	331.6041828	473.7726652	357.7420571	22-1_par	1.214285714	1.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.065	100	0	0	NA	5qG2	chr5-87677374-151647482	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.283480955	sgMsh2	cell line
chr5	30180338	30180338	A	C	ENSMUST00000114786.7	1	ENSMUSG00000059447	missense	K/N	392	Hadhb	ENSMUST00000114786.7:c.1176A>C	ENSMUSP00000110434.1:p.Lys392Asn	H-2-Db	9	5	7	QILANFNAM	QILANFKAM	NetMHCpan	398.5	2180.6	5.472	291	0.055	482.4	1646.896	3.414	4619.85	744.19	2180.6	398.5	888.4234229	464.1090103	1113.191804	500.6912479	22-1_par	0.728571429	1.1	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.058	291	0	0	NA	5qB1	chr5-3344388-87674558	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.252952237	sgMsh2	cell line
chr5	124775464	124775464	T	A	ENSMUST00000058440.11	5	ENSMUSG00000038011	missense	M/K	1919	Dnah10	ENSMUST00000058440.11:c.5756T>A	ENSMUSP00000062995.8:p.Met1919Lys	H-2-Kb	8	6	6	YGYEYKGL	YGYEYMGL	NetMHC	12.12	3.75	0.309	159	0.031	24.866	10.185	0.41	3.75	12.12	6.7	15	13.6691025	34.73281635	16.77799266	34.81288376	22-1_par	-1	-1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.045	159	0	0	NA	5qF	chr5-87677374-151647482	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.196256046	sgMsh2	cell line
chr5	89710685	89710685	A	G	ENSMUST00000163159.7	1	ENSMUSG00000043635	missense	V/A	306	Adamts3	ENSMUST00000163159.7:c.917T>C	ENSMUSP00000132219.1:p.Val306Ala	H-2-Kb	8	6	6	INVVLARM	INVVLVRM	NetMHC	48.67	274.1	5.632	399	0.023	109.352	351.196	3.212	274.1	48.67	200.1	70.2	489.4856902	169.3323751	428.2920371	148.504632	22-1_par	1.128571429	1.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.032	399	0	0	NA	5qE1	chr5-87677374-151647482	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.139559855	sgMsh2	cell line
chr5	135734865	135734865	G	T	ENSMUST00000005651.12	1	ENSMUSG00000005514	missense	A/S	649	Por	ENSMUST00000005651.12:c.1945G>T	ENSMUSP00000005651.6:p.Ala649Ser	H-2-Kb	8	9	3	IVSEFGPM	IVAEFGPM	NetMHC	62.54	39.82	0.637	156	0.032	134.026	73.331	0.547	39.82	62.54	39	79.8	106.8415057	203.5822922	118.7790917	188.2521739	22-1_par	0.371428571	0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.04	156	0	0	NA	5qG2	chr5-87677374-151647482	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.174449819	sgMsh2	cell line
chr4	118226333	118226333	T	C	ENSMUST00000049074.12	5	ENSMUSG00000033295	missense	T/A	826	Ptprf	ENSMUST00000049074.12:c.2476A>G	ENSMUSP00000039368.6:p.Thr826Ala	H-2-Kb	8	6	6	TTAMHAAL	TTAMHTAL	SMM	106.842	305.309	2.858	56	0.464	138.109	433.686	3.14	755.5	155.23	514.4	234.4	305.3092764	106.8415057	352.9717922	120.9873599	22-1_par	1.028571429	1.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.468	56	0	0	NA	4qD2.1	chr4-113931465-156223608	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	2	1	sgMsh2	cell line
chr4	139399606	139399606	C	T	ENSMUST00000097822.9	5	ENSMUSG00000066036	missense	A/V	480	Ubr4	ENSMUST00000097822.9:c.1439C>T	ENSMUSP00000095433.3:p.Ala480Val	H-2-Kb	8	11	1	VIKLLASL	AIKLLASL	SMMPMBEC	134.816	462.104	3.428	149	0.047	163.988	696.805	4.249	1298.38	195.76	856.9	185.5	536.7103866	142.4754378	462.1042896	134.8155538	22-1_par	1.857142857	1.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.058	149	0	0	NA	4qD3	chr4-113931465-156223608	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.252952237	sgMsh2	cell line
chr6	42247530	42247530	A	C	ENSMUST00000031897.7	1	ENSMUSG00000029864	missense	Q/H	110	Gstk1	ENSMUST00000031897.7:c.330A>C	ENSMUSP00000031897.5:p.Gln110His	H-2-Kb	8	7	5	VSMEHPEM	VSMEQPEM	NetMHCpan	106.4	841.9	7.913	432	0.037	337.413	1812.613	5.372	1989.39	207.37	841.9	106.4	1635.836898	467.4552051	2166.406749	504.3592613	22-1_par	-1.257142857	-0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.042	432	0	0	NA	6qB2.1	chr6-3373003-129638907	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.18317231	sgMsh2	cell line
chr5	104059772	104059772	A	C	ENSMUST00000031250.13	1	ENSMUSG00000029310	missense	E/A	260	Nudt9	ENSMUST00000031250.13:c.779A>C	ENSMUSP00000031250.7:p.Glu260Ala	H-2-Kb	8	6	6	ALFSQAHL	ALFSQEHL	SMM	133.887	934.846	6.982	96	0.031	140.796	963.684	6.845	3385.05	221.55	840.5	144.9	934.8458404	133.88749	992.5216755	136.691025	22-1_par	0.671428571	0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.026	96	0	0	NA	5qE5	chr5-87677374-151647482	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.113392382	sgMsh2	cell line
chr5	115479788	115479788	G	T	ENSMUST00000112066.1	1	ENSMUSG00000029524	missense	L/I	270	Sirt4	ENSMUST00000112066.1:c.808C>A	ENSMUSP00000107697.1:p.Leu270Ile	H-2-Kb	8	5	7	SGYRFIIT	SGYRFILT	NetMHCpan	85.8	41.1	0.479	46	0.13	244.891	78.228	0.319	49.86	225.09	41.1	85.8	143.7937467	310.9853997	106.5957771	264.691503	22-1_par	0.7	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.114	46	0	0	NA	5qF	chr5-87677374-151647482	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.497181983	sgMsh2	cell line
chr4	118226333	118226333	T	C	ENSMUST00000049074.12	5	ENSMUSG00000033295	missense	T/A	826	Ptprf	ENSMUST00000049074.12:c.2476A>G	ENSMUSP00000039368.6:p.Thr826Ala	H-2-Kb	8	7	5	TAMHAALL	TAMHTALL	NetMHCpan	245.2	322.4	1.315	56	0.464	458.346	575.254	1.255	545.53	414.65	322.4	245.2	954.4210297	649.7405923	604.9785825	502.041941	22-1_par	1.671428571	1.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.468	56	0	0	NA	4qD2.1	chr4-113931465-156223608	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	2	1	sgMsh2	cell line
chr6	42624552	42624552	TA	T	ENSMUST00000031879.4	1	ENSMUSG00000029851	FS	Y/X	858	Tcaf2	ENSMUST00000031879.4:c.2572del	ENSMUSP00000031879.3:p.Tyr858ThrfsTer10	H-2-Kb	8	6	6	YQTIFTSL	YQTIFYIP	NetMHCpan	351.6	11473.4	32.632	165	0.042	427.807	19194.327	44.867	17217.72	521.79	11473.4	351.6	21170.93311	407.1364636	32414.55024	448.476819	22-1_par	0.771428571	0.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.055	165	0	0	NA	6qB2.1	chr6-3373003-129638907	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.239868501	sgMsh2	cell line
chr6	34799756	34799756	T	G	ENSMUST00000115016.7	1	ENSMUSG00000038836	missense	F/C	399	Agbl3	ENSMUST00000115016.7:c.1196T>G	ENSMUSP00000110668.1:p.Phe399Cys	H-2-Kb	8	11	1	CIFKVVPM	FIFKVVPM	NetMHCpan	299.7	317.2	1.058	233	0.052	434.287	283.83	0.654	374.38	563.16	317.2	299.7	238.0893668	379.0879676	250.4609364	489.4856902	22-1_par	1.728571429	1.814285714	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.052	233	0	0	NA	6qB1	chr6-3373003-129638907	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.226784764	sgMsh2	cell line
chr5	124714225	124714225	A	G	ENSMUST00000037865.12	1	ENSMUSG00000038023	missense	N/D	573	Atp6v0a2	ENSMUST00000037865.12:c.1717A>G	ENSMUSP00000039737.8:p.Asn573Asp	H-2-Kb	8	6	6	VLGIFDHL	VLGIFNHL	SMMPMBEC	272.734	138.593	0.508	218	0.023	416.046	155.244	0.373	184.02	834.42	138.8	507.2	171.6880231	324.8927349	138.5925865	272.7344509	22-1_par	1.114285714	1.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.032	218	0	0	NA	5qF	chr5-87677374-151647482	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.139559855	sgMsh2	cell line
chr5	114060111	114060111	T	G	ENSMUST00000058472.12	1	ENSMUSG00000042078	missense	M/L	134	Svop	ENSMUST00000058472.12:c.400A>C	ENSMUSP00000050730.6:p.Met134Leu	H-2-Kb	9	3	9	TSVVFIGML	TSVVFIGMM	NetMHC	31.89	72.13	2.262	184	0.049	118.692	193.902	1.634	72.13	31.89	138.2	53.2	267.3683525	203.287184	249.6031145	184.183194	22-1_par	3	3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.05	184	0	0	NA	5qF	chr5-87677374-151647482	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.218062273	sgMsh2	cell line
chr5	89710685	89710685	A	G	ENSMUST00000163159.7	1	ENSMUSG00000043635	missense	V/A	306	Adamts3	ENSMUST00000163159.7:c.917T>C	ENSMUSP00000132219.1:p.Val306Ala	H-2-Kb	9	8	4	VVLARMIML	VVLVRMIML	NetMHC	94.73	69.16	0.73	399	0.023	106.036	81.038	0.764	69.16	94.73	143.1	101.6	81.4910662	128.8575886	80.58421878	110.4714362	22-1_par	1.885714286	2.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.032	399	0	0	NA	5qE1	chr5-87677374-151647482	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.139559855	sgMsh2	cell line
chr5	124714225	124714225	A	G	ENSMUST00000037865.12	1	ENSMUSG00000038023	missense	N/D	573	Atp6v0a2	ENSMUST00000037865.12:c.1717A>G	ENSMUSP00000039737.8:p.Asn573Asp	H-2-Kb	9	5	7	VVLGIFDHL	VVLGIFNHL	NetMHCpan	109.9	40.8	0.371	218	0.023	202.199	84.9	0.42	52.82	158.22	40.8	109.9	116.9795644	250.097874	134.6635317	246.1784313	22-1_par	1.114285714	2.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.032	218	0	0	NA	5qF	chr5-87677374-151647482	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.139559855	sgMsh2	cell line
chr6	42247530	42247530	A	C	ENSMUST00000031897.7	1	ENSMUSG00000029864	missense	Q/H	110	Gstk1	ENSMUST00000031897.7:c.330A>C	ENSMUSP00000031897.5:p.Gln110His	H-2-Kb	9	7	5	VSMEHPEML	VSMEQPEML	NetMHCpan	178.3	1185.7	6.65	432	0.037	199.842	874.452	4.376	1053.48	188.7	1185.7	178.3	625.3310593	214.3433431	695.4245209	210.9842323	22-1_par	-0.6	-0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.042	432	0	0	NA	6qB2.1	chr6-3373003-129638907	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.18317231	sgMsh2	cell line
chr4	86576793	86576793	A	C	ENSMUST00000091064.7	NA	ENSMUSG00000070934	missense	N/T	292	Rraga	ENSMUST00000091064.7:c.875A>C	ENSMUSP00000088591.6:p.Asn292Thr	H-2-Kb	9	11	1	TARKHFEKL	NARKHFEKL	SMMPMBEC	199.182	734.937	3.69	230	0.048	254.58	1181.595	4.641	1772.4	230.86	1429.7	278.3	933.4907095	284.5181656	734.93681	199.1819593	22-1_par	-1.771428571	-1.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.065	230	0	0	NA	4qC4	chr4-60155018-112862394	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.283480955	sgMsh2	cell line
chr4	118226333	118226333	T	C	ENSMUST00000049074.12	5	ENSMUSG00000033295	missense	T/A	826	Ptprf	ENSMUST00000049074.12:c.2476A>G	ENSMUSP00000039368.6:p.Thr826Ala	H-2-Kb	9	6	6	TTAMHAALL	TTAMHTALL	NetMHCpan	271.6	292.4	1.077	56	0.464	365.971	313.912	0.858	299.54	274.59	292.4	271.6	354.9032693	463.5643185	328.2842143	457.3513865	22-1_par	1.671428571	1.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.468	56	0	0	NA	4qD2.1	chr4-113931465-156223608	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	2	1	sgMsh2	cell line
chr5	138174975	138174975	GC	G	ENSMUST00000019662.10	1	ENSMUSG00000019518	FS	A/X	165	Ap4m1	ENSMUST00000019662.10:c.497del	ENSMUSP00000019662.4:p.Pro166GlnfsTer33	H-2-Kb	9	23	0	VVLTRAKRM	NA	SMMPMBEC	305.668	NA	NA	90	0.133	342.67	NA	NA	NA	378.36	NA	550.6	NA	306.9799422	NA	305.6680173	22-1_par	-0.871428571	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.125	90	0	0	NA	5qG2	chr5-87677374-151647482	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.545155683	sgMsh2	cell line
chr5	8930769	8930769	A	G	ENSMUST00000003717.12	1	ENSMUSG00000042476	missense	I/V	584	Abcb4	ENSMUST00000003717.12:c.1750A>G	ENSMUSP00000003717.8:p.Ile584Val	H-2-Kb	9	10	2	VVAHRLSTI	VIAHRLSTI	SMM	278.683	287.813	1.033	470	0.047	419.183	441.354	1.053	569.2	530.58	751.5	668.8	287.8127307	278.6826939	313.5089908	307.7868068	22-1_par	0.128571429	0.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.048	470	0	0	NA	5qA1	chr5-3344388-87674558	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.209339782	sgMsh2	cell line
chr7	140466564	140466564	G	A	ENSMUST00000216258.1	5	ENSMUSG00000056883	missense	R/H	121	Olfr533	ENSMUST00000216258.1:c.362G>A	ENSMUSP00000149238.1:p.Arg121His	H-2-Db	9	5	7	SAMAYDHYL	SAMAYDRYL	NetMHCpan	93.2	698.9	7.499	155	0.123	456.254	1316.962	2.886	3191.46	345.46	698.9	93.2	1128.807796	567.0482311	1505.116095	663.0862159	22-1_par	-0.257142857	-0.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.144	155	0	0	NA	7qF4	chr7-104336338-145323643	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.628019347	sgMsh2	cell line
chr7	43408934	43408934	G	T	ENSMUST00000005592.6	1	ENSMUSG00000030468	missense	V/L	82	Siglecg	ENSMUST00000005592.6:c.244G>T	ENSMUSP00000005592.6:p.Val82Leu	H-2-Db	9	3	9	VATNNKDKL	VATNNKDKV	SMM	288.151	491.609	1.706	23	0.13	389.456	734.618	1.886	837.45	414.52	1411.9	856.5	491.6091981	288.150913	631.786003	364.3929785	22-1_par	-2.171428571	-1.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.13	23	0	0	NA	7qB3	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.566961911	sgMsh2	cell line
chr7	102954991	102954991	CA	C	ENSMUST00000084812.2	NA	ENSMUSG00000066269	FS	F/X	210	Olfr575	ENSMUST00000084812.2:c.630del	ENSMUSP00000081873.2:p.Phe210LeufsTer6	H-2-Kb	8	4	8	VNFFYGFL	VNFFYGFF	SMM	2.191	35.624	16.255	128	0.094	2.799	33.268	11.887	31.4	4	12.8	2.8	35.62377999	2.191492557	35.13500341	2.797306149	22-1_par	1	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.1	128	0	0	NA	7qE3	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.436124547	sgMsh2	cell line
chr7	42136409	42136409	T	C	ENSMUST00000233771.1	NA	ENSMUSG00000090619	missense	V/A	212	Vmn2r60	ENSMUST00000233771.1:c.635T>C	ENSMUSP00000156805.1:p.Val212Ala	H-2-Kb	8	6	6	FSWSWAGL	FSWSWVGL	NetMHC	14.02	72.7	5.185	183	0.104	23.249	70.95	3.052	72.7	14.02	69.2	29.2	80.8611661	27.97306149	53.42444264	18.52422298	22-1_par	0.257142857	0.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.099	183	0	0	NA	7qB3	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.431763301	sgMsh2	cell line
chr6	57258903	57258903	T	C	ENSMUST00000228297.1	NA	ENSMUSG00000115199	missense	L/P	252	Vmn1r15	ENSMUST00000228297.1:c.755T>C	ENSMUSP00000154252.1:p.Leu252Pro	H-2-Kb	8	6	6	ISFTSPLL	ISFTSLLL	NetMHCpan	18.5	18.7	1.011	389	0.041	26.933	32.376	1.202	27.62	21	18.7	18.5	37.13128679	32.86548155	42.33894187	38.52476516	22-1_par	0.928571429	1.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.043	389	0	0	NA	6qB3	chr6-3373003-129638907	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.187533555	sgMsh2	cell line
chr7	41837168	41837168	A	G	ENSMUST00000171671.2	5	ENSMUSG00000090383	missense	F/L	768	Vmn2r58	ENSMUST00000171671.2:c.2302T>C	ENSMUSP00000126966.1:p.Phe768Leu	H-2-Kb	8	5	7	GSYTMALL	GSYTMAFL	NetMHC	21.95	25.18	1.147	583	0.048	45.829	34.61	0.755	25.18	21.95	47.7	49.9	40.06268017	60.35871704	29.15680954	41.75802981	22-1_par	1.214285714	1.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.052	583	0	0	NA	7qB3	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.226784764	sgMsh2	cell line
chr7	97535260	97535260	AC	A	ENSMUST00000026126.9	1	ENSMUSG00000025133	FS	D/X	857	Ints4	ENSMUST00000026126.9:c.2575del	ENSMUSP00000026126.8:p.Gln859ArgfsTer17	H-2-Kb	8	20	0	SYIQMARL	NA	NetMHC	74.88	NA	NA	223	0.04	139.733	NA	NA	NA	74.88	NA	126.8	NA	163.5836898	NA	152.6651821	22-1_par	0.385714286	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.043	223	0	0	NA	7qE1	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.187533555	sgMsh2	cell line
chr6	57258903	57258903	T	C	ENSMUST00000228297.1	NA	ENSMUSG00000115199	missense	L/P	252	Vmn1r15	ENSMUST00000228297.1:c.755T>C	ENSMUSP00000154252.1:p.Leu252Pro	H-2-Kb	8	5	7	IISFTSPL	IISFTSLL	NetMHCpan	63.1	148.3	2.35	389	0.041	308.01	861.208	2.796	386.62	127.66	148.3	63.1	1335.795574	504.3592613	1345.054866	488.3599043	22-1_par	1.028571429	1.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.043	389	0	0	NA	6qB3	chr6-3373003-129638907	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.187533555	sgMsh2	cell line
chr7	79915214	79915214	G	T	ENSMUST00000075657.7	1	ENSMUSG00000063801	missense	A/D	69	Ap3s2	ENSMUST00000075657.7:c.206C>A	ENSMUSP00000075082.6:p.Ala69Asp	H-2-Kb	8	6	6	IYRHYDTL	IYRHYATL	NetMHCpan	98.4	11.7	0.119	121	0.116	258.429	31.478	0.122	9.08	148.95	11.7	98.4	53.17897962	367.908651	51.25544401	413.7518989	22-1_par	-1.528571429	-1.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.118	121	0	0	NA	7qD2	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.514626965	sgMsh2	cell line
chr7	86166207	86166207	T	A	ENSMUST00000167830.2	5	ENSMUSG00000090436	missense	S/C	150	Vmn2r75	ENSMUST00000167830.2:c.448A>T	ENSMUSP00000126973.1:p.Ser150Cys	H-2-Kb	8	8	4	VSTCLGPL	VSTSLGPL	SMM	128.452	96.993	0.755	158	0.07	151.575	101.549	0.67	78.47	149.78	254.2	366.8	96.99291239	128.4517425	106.106014	153.3698525	22-1_par	0.942857143	1	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.068	158	0	0	NA	7qD3	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.296564692	sgMsh2	cell line
chr7	127328693	127328693	T	C	ENSMUST00000106306.8	1	ENSMUSG00000030830	missense	V/A	1021	Itgal	ENSMUST00000106306.8:c.3062T>C	ENSMUSP00000101913.2:p.Val1021Ala	H-2-Kb	8	10	2	IAFRREIL	IVFRREIL	NetMHCpan	91.6	77.4	0.845	118	0.051	311.687	321.965	1.033	209.68	161.27	77.4	91.6	469.6128803	462.1042896	434.2501729	469.6128803	22-1_par	0.057142857	0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2	2	0.059	118	0	0	NA	7qF3	chr7-104336338-145323643	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.257313482	sgMsh2	cell line
chr7	133716924	133716924	A	C	ENSMUST00000033282.4	1	ENSMUSG00000030983	missense	S/R	131	Bccip	ENSMUST00000033282.4:c.391A>C	ENSMUSP00000033282.4:p.Ser131Arg	H-2-Kb	8	5	7	EIFGFIRL	EIFGFISL	SMMPMBEC	57.642	103.691	1.799	216	0.037	77.251	125.255	1.621	369.59	164.16	129.8	85.2	120.7090967	69.30107956	103.6907462	57.64212727	22-1_par	1.928571429	1.928571429	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.043	216	0	0	NA	7qF3	chr7-104336338-145323643	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.187533555	sgMsh2	cell line
chr6	69043167	69043167	A	G	ENSMUST00000103342.3	NA	ENSMUSG00000076541	missense	Y/H	55	Igkv4-79	ENSMUST00000103342.3:c.163T>C	ENSMUSP00000100143.3:p.Tyr55His	H-2-Kb	8	5	7	SSVSSSHL	SSVSSSYL	NetMHC	172.76	196.75	1.139	503	0.024	259.772	257.947	0.993	196.75	172.76	571.3	594	238.0893668	249.310173	277.8049629	270.2340064	22-1_par	0.228571429	0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.026	503	0	0	NA	6qC1	chr6-3373003-129638907	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.113392382	sgMsh2	cell line
chr7	41837168	41837168	A	G	ENSMUST00000171671.2	5	ENSMUSG00000090383	missense	F/L	768	Vmn2r58	ENSMUST00000171671.2:c.2302T>C	ENSMUSP00000126966.1:p.Phe768Leu	H-2-Kb	8	9	3	MALLSRNL	MAFLSRNL	SMM	167.009	39.971	0.239	583	0.048	204.717	34.32	0.168	28.67	182.06	25.4	233.4	39.97053856	167.0090478	52.57024488	227.3735801	22-1_par	0.628571429	0.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.052	583	0	0	NA	7qB3	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.226784764	sgMsh2	cell line
chr7	47189271	47189271	T	A	ENSMUST00000073793.4	1	ENSMUSG00000052303	missense	I/F	29	Mrgpra6	ENSMUST00000073793.4:c.85A>T	ENSMUSP00000073463.4:p.Ile29Phe	H-2-Kb	8	9	3	NAFVFWLL	NAIVFWLL	SMMPMBEC	68.508	324.893	4.742	306	0.02	69.101	330.601	4.784	1476.9	259.35	293.8	68.9	336.3101696	69.30107956	324.8927349	68.50779666	22-1_par	2.614285714	2.614285714	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;Vardict	3	0.028	306	0	0	NA	7qB3	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.122114873	sgMsh2	cell line
chr7	12715669	12715669	A	G	ENSMUST00000163852.1	5	ENSMUSG00000090762	missense	L/S	214	Vmn2r56	ENSMUST00000163852.1:c.641T>C	ENSMUSP00000129566.1:p.Leu214Ser	H-2-Kb	8	5	7	QLILYGSL	QLILYGLL	NetMHCpan	235.8	364.9	1.547	292	0.024	287.587	372.735	1.296	380.57	292.93	364.9	235.8	364.5356443	284.2758718	382.5956254	290.8975074	22-1_par	1.914285714	1.914285714	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.026	292	0	0	NA	7qA1	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.113392382	sgMsh2	cell line
chr7	10715510	10715510	T	A	ENSMUST00000117413.8	1	ENSMUSG00000034087	missense	F/I	547	Nlrp4b	ENSMUST00000117413.8:c.1639T>A	ENSMUSP00000113095.1:p.Phe547Ile	H-2-Kb	8	11	1	IFYCLFEM	FFYCLFEM	NetMHCpan	191	1271	6.654	133	0.053	238.019	965.146	4.055	967.04	317.79	1271	191	719.0183929	210.7366151	963.2521787	265.3016799	22-1_par	1.285714286	1.657142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.064	133	0	0	NA	7qA1	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.27911971	sgMsh2	cell line
chr6	135079098	135079098	T	C	ENSMUST00000050104.7	1	ENSMUSG00000046733	missense	M/T	181	Gprc5a	ENSMUST00000050104.7:c.542T>C	ENSMUSP00000061062.7:p.Met181Thr	H-2-Kb	8	10	2	VTLLIYVL	VMLLIYVL	NetMHCpan	213.4	378	1.771	224	0.049	278.833	454.257	1.629	417.9	431.78	378	213.4	517.2970479	284.9311953	490.6140712	272.7344509	22-1_par	2.585714286	2.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.045	224	0	0	NA	6qG1	chr6-132626356-148425959	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.196256046	sgMsh2	cell line
chr7	10715510	10715510	T	A	ENSMUST00000117413.8	1	ENSMUSG00000034087	missense	F/I	547	Nlrp4b	ENSMUST00000117413.8:c.1639T>A	ENSMUSP00000113095.1:p.Phe547Ile	H-2-Kb	8	8	4	TMKIFYCL	TMKFFYCL	NetMHCpan	237.3	107.6	0.453	133	0.053	396.498	372.737	0.94	625.76	582.72	107.6	237.3	393.3145385	423.3894187	352.1599796	369.6068402	22-1_par	1.471428571	1.471428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.064	133	0	0	NA	7qA1	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.27911971	sgMsh2	cell line
chr7	111599057	111599057	C	A	ENSMUST00000049430.14	1	ENSMUSG00000038296	missense	E/D	165	Galnt18	ENSMUST00000049430.14:c.495G>T	ENSMUSP00000043636.8:p.Glu165Asp	H-2-Kb	8	4	8	IVFIFVND	IVFIFVNE	SMMPMBEC	26.53	16.171	0.61	125	0.056	363.197	90.776	0.25	165.38	693.98	1123.8	1691.1	15.58619122	32.41455024	16.17111628	26.53016799	22-1_par	1.642857143	2.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.062	125	0	0	NA	7qF1	chr7-104336338-145323643	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.270397219	sgMsh2	cell line
chr7	119528595	119528595	A	C	ENSMUST00000066465.2	1	ENSMUSG00000030972	missense	N/T	53	Acsm5	ENSMUST00000066465.2:c.158A>C	ENSMUSP00000063416.1:p.Asn53Thr	H-2-Kb	8	10	2	FTFAHDVL	FNFAHDVL	SMM	135.438	150.918	1.114	82	0.085	314.747	292.02	0.928	833.59	1040.47	344.3	437.3	150.9176382	135.4378341	239.7397234	192.1940772	22-1_par	0.742857143	0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.103	82	0	0	NA	7qF2	chr7-104336338-145323643	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.449208283	sgMsh2	cell line
chr7	79915214	79915214	G	T	ENSMUST00000075657.7	1	ENSMUSG00000063801	missense	A/D	69	Ap3s2	ENSMUST00000075657.7:c.206C>A	ENSMUSP00000075082.6:p.Ala69Asp	H-2-Kb	9	5	7	LIYRHYDTL	LIYRHYATL	NetMHC	9.15	2.96	0.323	121	0.116	27.284	9.872	0.362	2.96	9.15	4.6	15.1	15.85294672	41.60159675	15.14432775	39.46844353	22-1_par	-1.528571429	-0.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.118	121	0	0	NA	7qD2	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.514626965	sgMsh2	cell line
chr7	97535260	97535260	AC	A	ENSMUST00000026126.9	1	ENSMUSG00000025133	FS	D/X	857	Ints4	ENSMUST00000026126.9:c.2575del	ENSMUSP00000026126.8:p.Gln859ArgfsTer17	H-2-Kb	9	19	0	RSYIQMARL	NA	NetMHC	9.59	NA	NA	223	0.04	69.459	NA	NA	NA	9.59	NA	18.9	NA	134.001605	NA	120.0189989	22-1_par	0.385714286	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.043	223	0	0	NA	7qE1	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.187533555	sgMsh2	cell line
chr7	12416361	12416361	A	G	ENSMUST00000080348.11	1	ENSMUSG00000034071	missense	F/L	374	Zfp551	ENSMUST00000080348.11:c.1120T>C	ENSMUSP00000079222.5:p.Phe374Leu	H-2-Kb	9	9	3	KSLTYKSNL	KSFTYKSNL	NetMHC	21.47	9.16	0.427	152	0.046	167.555	55.758	0.333	9.16	21.47	9.1	50.5	102.3552209	287.1507798	102.6242509	284.6098982	22-1_par	-0.371428571	-0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.062	152	0	0	NA	7qA1	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.270397219	sgMsh2	cell line
chr7	140466564	140466564	G	A	ENSMUST00000216258.1	5	ENSMUSG00000056883	missense	R/H	121	Olfr533	ENSMUST00000216258.1:c.362G>A	ENSMUSP00000149238.1:p.Arg121His	H-2-Kb	9	7	5	MAYDHYLAI	MAYDRYLAI	NetMHCpan	11.5	14.8	1.287	155	0.123	32.955	34.154	1.036	30.53	24.69	14.8	11.5	39.82080176	41.22019102	37.77896015	41.51929781	22-1_par	0.114285714	0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.144	155	0	0	NA	7qF4	chr7-104336338-145323643	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.628019347	sgMsh2	cell line
chr6	57258903	57258903	T	C	ENSMUST00000228297.1	NA	ENSMUSG00000115199	missense	L/P	252	Vmn1r15	ENSMUST00000228297.1:c.755T>C	ENSMUSP00000154252.1:p.Leu252Pro	H-2-Kb	9	4	8	FIISFTSPL	FIISFTSLL	NetMHC	25.06	51.85	2.069	389	0.041	66.143	108.246	1.637	51.85	25.06	94	36.1	122.4926415	96.18558706	215.8986864	154.9708446	22-1_par	1.028571429	1.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.043	389	0	0	NA	6qB3	chr6-3373003-129638907	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.187533555	sgMsh2	cell line
chr7	102941849	102941849	T	A	ENSMUST00000210571.1	NA	ENSMUSG00000052785	missense	T/S	243	Olfr573-ps1	ENSMUST00000210571.1:c.727A>T	ENSMUSP00000147664.1:p.Thr243Ser	H-2-Kb	9	11	1	SVLLFYIPF	TVLLFYIPF	SMM	27.423	36.067	1.315	381	0.037	34.926	49.619	1.421	57.43	31.37	188.1	112.9	36.06699835	27.42268658	41.80709584	38.48132346	22-1_par	2.114285714	2.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.051	381	0	0	NA	7qE3	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.222423519	sgMsh2	cell line
chr7	104107025	104107025	T	C	ENSMUST00000214099.1	5	ENSMUSG00000073931	missense	Y/H	249	Olfr646	ENSMUST00000214099.1:c.745T>C	ENSMUSP00000149102.1:p.Tyr249His	H-2-Kb	9	11	1	HIPAFFSFL	YIPAFFSFL	NetMHC	32.05	14.32	0.447	123	0.041	182.335	117.163	0.643	14.32	32.05	30.1	44.7	204.225515	319.9705442	273.0549161	461.5832068	22-1_par	1.657142857	1.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2	2	0.052	123	0	0	NA	7qE3	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.226784764	sgMsh2	cell line
chr7	102954991	102954991	CA	C	ENSMUST00000084812.2	NA	ENSMUSG00000066269	FS	F/X	210	Olfr575	ENSMUST00000084812.2:c.630del	ENSMUSP00000081873.2:p.Phe210LeufsTer6	H-2-Kb	9	4	8	VNFFYGFLL	VNFFYGFFV	NetMHCpan	8.4	34.1	4.06	128	0.094	35.361	130.861	3.701	121.36	35.88	34.1	8.4	143.5853066	34.84255546	140.3621462	37.69207095	22-1_par	2.042857143	2.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.1	128	0	0	NA	7qE3	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.436124547	sgMsh2	cell line
chr7	44116814	44116814	A	T	ENSMUST00000077528.6	1	ENSMUSG00000060177	missense	I/F	240	Klk1b22	ENSMUST00000077528.6:c.718A>T	ENSMUSP00000076733.6:p.Ile240Phe	H-2-Kb	9	7	5	NAPAFYTKL	NAPAIYTKL	NetMHCpan	24.7	463.9	18.781	409	0.034	195.971	1963.439	10.019	2046.48	40.18	463.9	24.7	2302.02481	370.7746213	1880.39895	351.7628732	22-1_par	0.128571429	0.128571429	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Vardict	2	0.036	409	0	0	NA	7qB3	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.157004837	sgMsh2	cell line
chr7	133716924	133716924	A	C	ENSMUST00000033282.4	1	ENSMUSG00000030983	missense	S/R	131	Bccip	ENSMUST00000033282.4:c.391A>C	ENSMUSP00000033282.4:p.Ser131Arg	H-2-Kb	9	7	5	FGFIRLLNL	FGFISLLNL	NetMHCpan	31.3	119.5	3.818	216	0.037	98.556	377.799	3.833	201.93	54.47	119.5	31.3	575.5857057	167.1513929	553.6687348	142.6428476	22-1_par	1.528571429	1.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.043	216	0	0	NA	7qF3	chr7-104336338-145323643	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.187533555	sgMsh2	cell line
chr7	88130831	88130831	A	C	ENSMUST00000155358.2	1	ENSMUSG00000049583	missense	I/L	1192	Grm5	ENSMUST00000155358.2:c.3574A>C	ENSMUSP00000114927.2:p.Ile1192Leu	H-2-Kb	9	3	9	SSPKYDTLL	SSPKYDTLI	NetMHC	59.67	287.28	4.814	73	0.055	271.201	682.002	2.515	287.28	59.67	1129.3	273.8	666.9756823	268.6024688	697.02764	301.4740949	22-1_par	-0.485714286	-0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.076	73	0	0	NA	7qD3	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.331454655	sgMsh2	cell line
chr7	102954991	102954991	CA	C	ENSMUST00000084812.2	NA	ENSMUSG00000066269	FS	F/X	210	Olfr575	ENSMUST00000084812.2:c.630del	ENSMUSP00000081873.2:p.Phe210LeufsTer6	H-2-Kb	9	3	9	TVNFFYGFL	TVNFFYGFF	NetMHCpan	44.5	334.8	7.524	128	0.094	88.91	265.549	2.987	308.71	63.73	334.8	44.5	222.3873092	131.8590675	197.3558481	114.0906357	22-1_par	1	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.1	128	0	0	NA	7qE3	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.436124547	sgMsh2	cell line
chr7	47189271	47189271	T	A	ENSMUST00000073793.4	1	ENSMUSG00000052303	missense	I/F	29	Mrgpra6	ENSMUST00000073793.4:c.85A>T	ENSMUSP00000073463.4:p.Ile29Phe	H-2-Kb	9	9	3	NAFVFWLLL	NAIVFWLLL	NetMHCpan	64	255.6	3.994	306	0.02	73.057	244.429	3.346	254.84	79.57	255.6	64	185.8275068	66.54416808	234.0183969	87.14651012	22-1_par	2.9	2.9	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;Vardict	3	0.028	306	0	0	NA	7qB3	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.122114873	sgMsh2	cell line
chr7	127328693	127328693	T	C	ENSMUST00000106306.8	1	ENSMUSG00000030830	missense	V/A	1021	Itgal	ENSMUST00000106306.8:c.3062T>C	ENSMUSP00000101913.2:p.Val1021Ala	H-2-Kb	9	10	2	IAFRREILI	IVFRREILI	NetMHC	103.34	121.4	1.175	118	0.051	111.359	128.737	1.156	121.4	103.34	143.5	112.5	130.0498932	115.6405104	127.4236379	110.2173589	22-1_par	0.442857143	0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2	2	0.059	118	0	0	NA	7qF3	chr7-104336338-145323643	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.257313482	sgMsh2	cell line
chr7	140466564	140466564	G	A	ENSMUST00000216258.1	5	ENSMUSG00000056883	missense	R/H	121	Olfr533	ENSMUST00000216258.1:c.362G>A	ENSMUSP00000149238.1:p.Arg121His	H-2-Kb	9	5	7	SAMAYDHYL	SAMAYDRYL	NetMHC	105.87	61.41	0.58	155	0.123	213.65	230.898	1.081	61.41	105.87	125.2	108.8	336.5968133	318.5004131	381.2852457	343.7557727	22-1_par	-0.257142857	-0.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.144	155	0	0	NA	7qF4	chr7-104336338-145323643	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.628019347	sgMsh2	cell line
chr6	55173449	55173449	T	C	ENSMUST00000003569.5	1	ENSMUSG00000003477	missense	T/A	68	Inmt	ENSMUST00000003569.5:c.202A>G	ENSMUSP00000003569.5:p.Thr68Ala	H-2-Kb	9	8	4	SGPAIYQLL	SGPTIYQLL	NetMHCpan	86	81.7	0.95	104	0.067	458.993	401.14	0.874	99.03	130.74	81.7	86	703.2504197	787.2451613	753.7893549	897.9455448	22-1_par	1.071428571	1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.088	104	0	0	NA	6qB3	chr6-3373003-129638907	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.383789601	sgMsh2	cell line
chr7	127235565	127235565	T	G	ENSMUST00000106312.3	1	ENSMUSG00000045598	missense	D/E	97	Zfp553	ENSMUST00000106312.3:c.291T>G	ENSMUSP00000101919.3:p.Asp97Glu	H-2-Kb	9	4	8	KSFRQMSEL	KSFRQMSDL	NetMHCpan	87.4	194.6	2.227	62	0.081	218.87	358.624	1.639	241.64	130.76	194.6	87.4	542.1381881	306.9799422	475.6089297	343.7557727	22-1_par	-0.542857143	-0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.091	62	0	0	NA	7qF3	chr7-104336338-145323643	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.396873337	sgMsh2	cell line
chr7	104107025	104107025	T	C	ENSMUST00000214099.1	5	ENSMUSG00000073931	missense	Y/H	249	Olfr646	ENSMUST00000214099.1:c.745T>C	ENSMUSP00000149102.1:p.Tyr249His	H-2-Kb	9	6	6	VILVFHIPA	VILVFYIPA	NetMHC	178.25	53.28	0.299	123	0.041	289.3	86.769	0.3	53.28	178.25	500.4	805.9	80.37296686	281.2613131	93.16440185	297.3377153	22-1_par	1.757142857	2.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2	2	0.052	123	0	0	NA	7qE3	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.226784764	sgMsh2	cell line
chr7	44255245	44255245	A	G	ENSMUST00000118216.7	5	ENSMUSG00000012777	missense	C/R	158	Acp4	ENSMUST00000118216.7:c.472T>C	ENSMUSP00000112922.2:p.Cys158Arg	H-2-Kb	9	9	3	RSRPRYHEL	RSCPRYHEL	NetMHC	221.14	467.72	2.115	26	0.154	260.875	461.412	1.769	467.72	221.14	489.1	356.5	455.1033161	245.5330734	317.8703353	276.216743	22-1_par	-2.114285714	-2.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.182	26	0	0	NA	7qB3	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.793746675	sgMsh2	cell line
chr7	44116814	44116814	A	T	ENSMUST00000077528.6	1	ENSMUSG00000060177	missense	I/F	240	Klk1b22	ENSMUST00000077528.6:c.718A>T	ENSMUSP00000076733.6:p.Ile240Phe	H-2-Kb	9	10	2	AFYTKLIKF	AIYTKLIKF	NetMHC	243.83	201.98	0.828	409	0.034	267.146	211.418	0.791	201.98	243.83	276.7	823.8	220.8564057	289.8077532	180.405594	244.4837509	22-1_par	0.185714286	1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.036	409	0	0	NA	7qB3	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.157004837	sgMsh2	cell line
chr7	97535260	97535260	AC	A	ENSMUST00000026126.9	1	ENSMUSG00000025133	FS	D/X	857	Ints4	ENSMUST00000026126.9:c.2575del	ENSMUSP00000026126.8:p.Gln859ArgfsTer17	H-2-Kb	9	16	0	SRFRSYIQM	NA	NetMHC	257.13	NA	NA	223	0.04	285.685	NA	NA	NA	257.13	NA	521.7	NA	294.5167504	NA	276.8534884	22-1_par	-0.128571429	-0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.043	223	0	0	NA	7qE1	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.187533555	sgMsh2	cell line
chr7	135113863	135113863	A	G	ENSMUST00000084488.4	5	ENSMUSG00000058325	missense	I/V	1210	Dock1	ENSMUST00000084488.4:c.3628A>G	ENSMUSP00000081531.4:p.Ile1210Val	H-2-Kb	9	3	9	NVLNFYKEV	NVLNFYKEI	NetMHC	259.85	351.81	1.354	174	0.023	477.236	517.161	1.084	351.81	259.85	236.2	336.3	682.5115418	618.1729539	716.5557742	693.8250889	22-1_par	-0.2	-0.2	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Vardict	2	0.028	174	0	0	NA	7qF3	chr7-104336338-145323643	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.122114873	sgMsh2	cell line
chr7	12715669	12715669	A	G	ENSMUST00000163852.1	5	ENSMUSG00000090762	missense	L/S	214	Vmn2r56	ENSMUST00000163852.1:c.641T>C	ENSMUSP00000129566.1:p.Leu214Ser	H-2-Kb	9	4	8	FQLILYGSL	FQLILYGLL	NetMHC	277.01	324.13	1.17	292	0.024	439.379	386.005	0.879	324.13	277.01	632.3	425.6	402.8190492	550.9472251	369.1900603	453.1583638	22-1_par	1.914285714	1.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.026	292	0	0	NA	7qA1	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.113392382	sgMsh2	cell line
chr7	10715510	10715510	T	A	ENSMUST00000117413.8	1	ENSMUSG00000034087	missense	F/I	547	Nlrp4b	ENSMUST00000117413.8:c.1639T>A	ENSMUSP00000113095.1:p.Phe547Ile	H-2-Kb	9	8	4	TMKIFYCLF	TMKFFYCLF	SMMPMBEC	78.028	70.186	0.899	133	0.053	193.332	145.243	0.751	292.17	305.92	220.3	385.4	70.00192775	80.74395162	70.18592048	78.02791461	22-1_par	1.6	1.6	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.064	133	0	0	NA	7qA1	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.27911971	sgMsh2	cell line
chr6	135079098	135079098	T	C	ENSMUST00000050104.7	1	ENSMUSG00000046733	missense	M/T	181	Gprc5a	ENSMUST00000050104.7:c.542T>C	ENSMUSP00000061062.7:p.Met181Thr	H-2-Kb	9	10	2	VTLLIYVLV	VMLLIYVLV	SMMPMBEC	185.887	81.894	0.441	224	0.049	264.611	169.107	0.639	256.32	340.81	1483.5	1057.5	70.97575157	188.4126249	81.893607	185.8874201	22-1_par	3.285714286	3.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.045	224	0	0	NA	6qG1	chr6-132626356-148425959	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.196256046	sgMsh2	cell line
chr7	133716924	133716924	A	C	ENSMUST00000033282.4	1	ENSMUSG00000030983	missense	S/R	131	Bccip	ENSMUST00000033282.4:c.391A>C	ENSMUSP00000033282.4:p.Ser131Arg	H-2-Kb	9	5	7	EIFGFIRLL	EIFGFISLL	NetMHCpan	186.3	131.7	0.707	216	0.037	368.074	217.455	0.591	223.02	341.59	131.7	186.3	211.8897751	394.5572246	240.0214196	460.5215948	22-1_par	1.828571429	1.928571429	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.043	216	0	0	NA	7qF3	chr7-104336338-145323643	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.187533555	sgMsh2	cell line
chr7	42136409	42136409	T	C	ENSMUST00000233771.1	NA	ENSMUSG00000090619	missense	V/A	212	Vmn2r60	ENSMUST00000233771.1:c.635T>C	ENSMUSP00000156805.1:p.Val212Ala	H-2-Kb	9	6	6	FSWSWAGLI	FSWSWVGLI	NetMHCpan	326	448.9	1.377	183	0.104	485.896	504.4	1.038	351.76	369.08	448.9	326	559.8993973	602.7122243	563.9622051	728.1988689	22-1_par	1.014285714	1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.099	183	0	0	NA	7qB3	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.431763301	sgMsh2	cell line
chr7	108845098	108845098	A	G	ENSMUST00000216092.1	5	ENSMUSG00000062434	missense	L/S	304	Olfr516	ENSMUST00000216092.1:c.911T>C	ENSMUSP00000149160.1:p.Leu304Ser	H-2-Kb	9	10	2	KSWQRKVTL	KLWQRKVTL	NetMHCpan	299.8	1203.7	4.015	136	0.051	363.661	1891.571	5.201	2436.12	373.12	1203.7	299.8	2265.217979	471.0966327	1517.923903	354.201177	22-1_par	-0.785714286	-0.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.06	136	0	0	NA	7qE3	chr7-104336338-145323643	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.261674728	sgMsh2	cell line
chr6	134467586	134467586	A	C	ENSMUST00000032322.14	1	ENSMUSG00000030201	missense	L/W	1107	Lrp6	ENSMUST00000032322.14:c.3320T>G	ENSMUSP00000032322.8:p.Leu1107Trp	H-2-Kb	9	9	3	IAWALDSKL	IALALDSKL	SMMPMBEC	382.164	533.642	1.396	137	0.044	435.105	677.916	1.558	626.19	388.21	1148.9	482	729.6422938	568.9970306	533.6419961	382.1641989	22-1_par	0.042857143	0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.049	137	0	0	NA	6qG1	chr6-132626356-148425959	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.213701028	sgMsh2	cell line
chr7	41837168	41837168	A	G	ENSMUST00000171671.2	5	ENSMUSG00000090383	missense	F/L	768	Vmn2r58	ENSMUST00000171671.2:c.2302T>C	ENSMUSP00000126966.1:p.Phe768Leu	H-2-Kb	9	8	4	TMALLSRNL	TMAFLSRNL	NetMHC	428.46	420.97	0.983	583	0.048	481.659	477.22	0.991	420.97	428.46	342	466.6	533.469998	496.7181164	771.3473645	811.428019	22-1_par	0.628571429	0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.052	583	0	0	NA	7qB3	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.226784764	sgMsh2	cell line
chr7	127328695	127328695	T	C	ENSMUST00000106306.8	1	ENSMUSG00000030830	missense	F/L	1022	Itgal	ENSMUST00000106306.8:c.3064T>C	ENSMUSP00000101913.2:p.Phe1022Leu	H-2-Kb	9	9	3	IVLRREILI	IVFRREILI	SMMPMBEC	353.387	127.424	0.361	118	0.051	416.678	128.737	0.309	121.4	468.51	143.5	1060.4	130.0498932	364.8463451	127.4236379	353.3865369	22-1_par	0.585714286	0.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2	2	0.059	118	0	0	NA	7qF3	chr7-104336338-145323643	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.257313482	sgMsh2	cell line
chr7	10715510	10715510	T	A	ENSMUST00000117413.8	1	ENSMUSG00000034087	missense	F/I	547	Nlrp4b	ENSMUST00000117413.8:c.1639T>A	ENSMUSP00000113095.1:p.Phe547Ile	H-2-Kb	9	10	2	KIFYCLFEM	KFFYCLFEM	SMM	325.919	427.671	1.312	133	0.053	453.439	577.696	1.274	563.49	470.11	1097.6	586.2	427.6711949	325.9192408	591.9022625	436.7671833	22-1_par	1.285714286	1.657142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.064	133	0	0	NA	7qA1	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.27911971	sgMsh2	cell line
chr7	111599057	111599057	C	A	ENSMUST00000049430.14	1	ENSMUSG00000038296	missense	E/D	165	Galnt18	ENSMUST00000049430.14:c.495G>T	ENSMUSP00000043636.8:p.Glu165Asp	H-2-Kb	10	4	8	IVFIFVNDAL	IVFIFVNEAL	NetMHC	81.86	81.57	0.996	125	0.056	475.236	461.336	0.971	81.57	81.86	98.8	124.7	942.6055662	861.6482296	823.8724871	825.7717093	22-1_par	1.442857143	2.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.062	125	0	0	NA	7qF1	chr7-104336338-145323643	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.270397219	sgMsh2	cell line
chr9	106835549	106835549	GC	G	ENSMUST00000159645.7	1	ENSMUSG00000040325	FS	P/X	99	Dcaf1	ENSMUST00000159645.7:c.299del	ENSMUSP00000123865.1:p.Pro100LeufsTer2	H-2-Db	9	4	9	YVMTSREPL	YVMTSREPP	NetMHCpan	107.6	7071.2	65.717	114	0.158	271.527	6403.672	23.584	13429.19	145.34	7071.2	107.6	5736.143402	483.7489106	5030.023337	397.7131951	22-1_par	-0.771428571	-0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.142	114	0	0	NA	9qF1	chr9-3190600-124127055	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.619296856	sgMsh2	cell line
chr9	92606786	92606786	T	C	ENSMUST00000160359.1	1	ENSMUSG00000032374	missense	V/A	673	Plod2	ENSMUST00000160359.1:c.2018T>C	ENSMUSP00000125373.1:p.Val673Ala	H-2-Db	9	5	7	FALLNFAVK	FALLNFVVK	SMMPMBEC	83.67	99.671	1.191	154	0.039	159.671	209.505	1.312	283.61	213.02	2316.5	1314.1	135.4004164	106.3212319	99.67127183	83.67004451	22-1_par	1.285714286	2.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.058	154	0	0	NA	9qE3.3	chr9-3190600-124127055	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.252952237	sgMsh2	cell line
chrX	71938914	71938914	AT	A	ENSMUST00000101495.2	1	ENSMUSG00000073130	FS	N/X	314	Gm1141	ENSMUST00000101495.2:c.948del	ENSMUSP00000099034.2:p.Phe316LeufsTer113	H-2-Db	9	15	0	IATLNIHKV	NA	NetMHC	318.54	NA	NA	148	0.115	498.623	NA	NA	NA	318.54	NA	478.9	NA	518.3462966	NA	633.2424201	22-1_par	0.171428571	1.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.111	148	0	0	NA	XqA7.3	NA	NA	NA	NA	0.9	3.925120919	POOR GOF (79.6%)	NA	NA	sgMsh2	cell line
chr9	54891129	54891129	CT	C	ENSMUST00000034843.8	1	ENSMUSG00000032293	FS	F/X	385	Ireb2	ENSMUST00000034843.8:c.1157del	ENSMUSP00000034843.7:p.Phe386SerfsTer6	H-2-Kb	8	7	6	AILSFSLL	AILSFFPV	NetMHC	8.15	32.72	4.015	291	0.055	22.925	43.128	1.881	32.72	8.15	63.3	14.1	42.73069928	31.74972734	43.52512229	33.70854446	22-1_par	2.442857143	2.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.053	291	0	0	NA	9qB	chr9-3190600-124127055	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.23114601	sgMsh2	cell line
chrX	71938914	71938914	AT	A	ENSMUST00000101495.2	1	ENSMUSG00000073130	FS	N/X	314	Gm1141	ENSMUST00000101495.2:c.948del	ENSMUSP00000099034.2:p.Phe316LeufsTer113	H-2-Kb	8	75	0	VKYLYRHV	NA	NetMHC	10.59	NA	NA	148	0.115	22.029	NA	NA	NA	10.59	NA	70.1	NA	20.73671696	NA	23.32061504	22-1_par	-0.885714286	-0.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.111	148	0	0	NA	XqA7.3	NA	NA	NA	NA	0.9	3.925120919	POOR GOF (79.6%)	NA	NA	sgMsh2	cell line
chr9	44514177	44514177	C	T	ENSMUST00000215293.1	1	ENSMUSG00000047880	missense	S/N	61	Cxcr5	ENSMUST00000215293.1:c.182G>A	ENSMUSP00000149508.1:p.Ser61Asn	H-2-Kb	8	8	4	VAYNLIFL	VAYSLIFL	NetMHC	11.89	13.21	1.111	173	0.121	20.11	18.69	0.929	13.21	11.89	14.8	16.9	22.58083514	23.32061504	28.42758718	31.38629122	22-1_par	1.7	1.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.137	173	0	0	NA	9qA5.2	chr9-3190600-124127055	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.597490629	sgMsh2	cell line
chrX	71938914	71938914	AT	A	ENSMUST00000101495.2	1	ENSMUSG00000073130	FS	N/X	314	Gm1141	ENSMUST00000101495.2:c.948del	ENSMUSP00000099034.2:p.Phe316LeufsTer113	H-2-Kb	8	68	0	VKYLYHHV	NA	NetMHC	18.7	NA	NA	148	0.115	24.644	NA	NA	NA	18.7	NA	47.7	NA	23.00064421	NA	26.28693795	22-1_par	-0.7	-0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.111	148	0	0	NA	XqA7.3	NA	NA	NA	NA	0.9	3.925120919	POOR GOF (79.6%)	NA	NA	sgMsh2	cell line
chr9	75211127	75211127	A	G	ENSMUST00000123128.7	5	ENSMUSG00000034593	missense	Q/R	1610	Myo5a	ENSMUST00000123128.7:c.4829A>G	ENSMUSP00000116028.1:p.Gln1610Arg	H-2-Kb	8	5	7	AIQIYQRL	AIQIYQQL	NetMHC	27.11	55.59	2.051	395	0.038	80.674	134.468	1.667	55.59	27.11	180	102.9	120.4314735	69.78145169	148.504632	91.56721386	22-1_par	0	0	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.043	395	0	0	NA	9qD	chr9-3190600-124127055	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.187533555	sgMsh2	cell line
chr9	40074483	40074483	A	G	ENSMUST00000054051.4	NA	ENSMUSG00000049010	missense	M/V	63	Olfr982	ENSMUST00000054051.4:c.187A>G	ENSMUSP00000052705.3:p.Met63Val	H-2-Kb	8	8	4	RSPVYHFL	RSPMYHFL	NetMHCpan	33.3	29.7	0.892	202	0.045	43.713	46.093	1.054	32.38	36.99	29.7	33.3	59.80534499	50.43592613	62.91294278	60.21989584	22-1_par	0.557142857	0.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.052	202	0	0	NA	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.226784764	sgMsh2	cell line
chr8	123270276	123270276	A	G	ENSMUST00000035495.14	1	ENSMUSG00000032815	missense	F/L	1254	Fanca	ENSMUST00000035495.14:c.3760T>C	ENSMUSP00000045217.8:p.Phe1254Leu	H-2-Kb	8	8	4	ALFLFSLM	ALFFFSLM	NetMHCpan	22.2	18	0.811	102	0.039	62.884	94.126	1.497	86.22	40.9	18	22.2	115.5420317	102.9769442	102.0328459	84.86722465	22-1_par	2.585714286	2.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.048	102	0	0	NA	8qE1	chr8-92827332-128726472	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.209339782	sgMsh2	cell line
chr9	20914012	20914012	G	A	ENSMUST00000004202.16	1	ENSMUSG00000004099	missense	A/V	1052	Dnmt1	ENSMUST00000004202.16:c.3155C>T	ENSMUSP00000004202.9:p.Ala1052Val	H-2-Kb	8	11	1	VVVNFSDV	AVVNFSDV	NetMHC	60.12	475.26	7.905	129	0.054	181.593	729.261	4.016	475.26	60.12	696.9	141.5	835.1029157	221.6868845	761.6229111	222.1979255	22-1_par	1.085714286	1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.06	129	0	0	NA	9qA3	chr9-3190600-124127055	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.261674728	sgMsh2	cell line
chr9	40074483	40074483	A	G	ENSMUST00000054051.4	NA	ENSMUSG00000049010	missense	M/V	63	Olfr982	ENSMUST00000054051.4:c.187A>G	ENSMUSP00000052705.3:p.Met63Val	H-2-Kb	8	11	1	VYHFLGHL	MYHFLGHL	NetMHCpan	28.6	70	2.448	202	0.045	337.149	720.745	2.138	177.51	77.62	70	28.6	1424.754378	667.9439184	1263.979412	596.6779652	22-1_par	0.328571429	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.052	202	0	0	NA	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.226784764	sgMsh2	cell line
chr8	123270276	123270276	A	G	ENSMUST00000035495.14	1	ENSMUSG00000032815	missense	F/L	1254	Fanca	ENSMUST00000035495.14:c.3760T>C	ENSMUSP00000045217.8:p.Phe1254Leu	H-2-Kb	8	7	5	IALFLFSL	IALFFFSL	NetMHCpan	38.5	7	0.182	102	0.039	96.145	9.023	0.094	8.12	87.64	7	38.5	9.925216755	104.6501849	10.6106014	113.172263	22-1_par	2.571428571	2.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.048	102	0	0	NA	8qE1	chr8-92827332-128726472	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.209339782	sgMsh2	cell line
chr8	31236033	31236033	C	T	ENSMUST00000161502.1	1	ENSMUSG00000046152	missense	A/V	272	Fut10	ENSMUST00000161502.1:c.815C>T	ENSMUSP00000125265.1:p.Ala272Val	H-2-Kb	8	11	1	VQYKFILA	AQYKFILA	NetMHCpan	89.8	392.6	4.372	173	0.035	118.424	524.958	4.433	562.68	94.7	392.6	89.8	573.7728575	152.3140619	487.2367077	142.1477533	22-1_par	0.6	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.045	173	0	0	NA	8qA3	chr8-21555893-88741726	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.196256046	sgMsh2	cell line
chrX	71938914	71938914	AT	A	ENSMUST00000101495.2	1	ENSMUSG00000073130	FS	N/X	314	Gm1141	ENSMUST00000101495.2:c.948del	ENSMUSP00000099034.2:p.Phe316LeufsTer113	H-2-Kb	8	82	0	VKYLYRHA	NA	SMMPMBEC	112.135	NA	NA	148	0.115	123.628	NA	NA	NA	123.45	NA	711.2	NA	123.8055176	NA	112.1346934	22-1_par	-1.228571429	-0.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.111	148	0	0	NA	XqA7.3	NA	NA	NA	NA	0.9	3.925120919	POOR GOF (79.6%)	NA	NA	sgMsh2	cell line
chr9	39019334	39019334	A	G	ENSMUST00000214410.1	5	ENSMUSG00000058820	missense	I/T	69	Olfr146	ENSMUST00000214410.1:c.206T>C	ENSMUSP00000149294.1:p.Ile69Thr	H-2-Kb	8	6	6	SSLSFTDF	SSLSFIDF	NetMHC	150.67	201.86	1.34	498	0.014	261.659	320.188	1.224	201.86	150.67	232.3	167.9	473.9581548	429.2793522	408.0750101	355.4184757	22-1_par	0.514285714	0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.02	498	0	0	NA	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.087224909	sgMsh2	cell line
chrX	50900386	50900386	C	A	ENSMUST00000060650.6	5	ENSMUSG00000036131	missense	K/N	227	Frmd7	ENSMUST00000060650.6:c.681G>T	ENSMUSP00000057103.5:p.Lys227Asn	H-2-Kb	8	5	7	NTFNWANI	NTFNWAKI	SMMPMBEC	113.172	393.315	3.475	125	0.136	162.484	571.524	3.517	926.22	179.43	553.2	178.5	589.847849	146.4670721	393.3145385	113.172263	22-1_par	0.071428571	0.071428571	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.145	125	0	0	NA	XqA5	NA	NA	NA	NA	0.9	3.925120919	POOR GOF (79.6%)	NA	NA	sgMsh2	cell line
chr8	31236033	31236033	C	T	ENSMUST00000161502.1	1	ENSMUSG00000046152	missense	A/V	272	Fut10	ENSMUST00000161502.1:c.815C>T	ENSMUSP00000125265.1:p.Ala272Val	H-2-Kb	8	9	3	VIVQYKFI	VIAQYKFI	SMMPMBEC	178.542	346.529	1.941	173	0.035	209.342	464.515	2.219	891.27	221.56	582.5	254.8	292.9139126	197.1242255	346.5293309	178.5418375	22-1_par	1.042857143	1.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.045	173	0	0	NA	8qA3	chr8-21555893-88741726	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.196256046	sgMsh2	cell line
chr9	54891129	54891129	CT	C	ENSMUST00000034843.8	1	ENSMUSG00000032293	FS	F/X	385	Ireb2	ENSMUST00000034843.8:c.1157del	ENSMUSP00000034843.7:p.Phe386SerfsTer6	H-2-Kb	8	9	4	LSFSLLTM	NA	NetMHCpan	118.3	NA	NA	291	0.055	331.055	NA	NA	NA	305.05	NA	118.3	NA	397.8689062	NA	357.0590129	22-1_par	1.428571429	1.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.053	291	0	0	NA	9qB	chr9-3190600-124127055	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.23114601	sgMsh2	cell line
chr8	123270276	123270276	A	G	ENSMUST00000035495.14	1	ENSMUSG00000032815	missense	F/L	1254	Fanca	ENSMUST00000035495.14:c.3760T>C	ENSMUSP00000045217.8:p.Phe1254Leu	H-2-Kb	8	10	2	FLFSLMGL	FFFSLMGL	SMMPMBEC	233.206	104.65	0.449	102	0.039	278.82	118.92	0.427	133.19	319.55	296.4	330.5	81.04757034	238.0893668	104.6501849	233.2061504	22-1_par	2.128571429	2.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.048	102	0	0	NA	8qE1	chr8-92827332-128726472	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.209339782	sgMsh2	cell line
chrX	96715190	96715190	T	A	ENSMUST00000033554.4	1	ENSMUSG00000031210	missense	D/E	192	Gpr165	ENSMUST00000033554.4:c.576T>A	ENSMUSP00000033554.4:p.Asp192Glu	H-2-Kb	8	8	4	ISLERHRV	ISLDRHRV	SMMPMBEC	419.508	639.352	1.524	102	0.029	424.987	739.326	1.74	1008.97	428.53	822.9	494.2	655.752568	421.444121	639.3519587	419.5077612	22-1_par	-1.214285714	-1.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.054	102	0	0	NA	XqC3	NA	NA	NA	NA	0.9	3.925120919	POOR GOF (79.6%)	NA	NA	sgMsh2	cell line
chrX	71938914	71938914	AT	A	ENSMUST00000101495.2	1	ENSMUSG00000073130	FS	N/X	314	Gm1141	ENSMUST00000101495.2:c.948del	ENSMUSP00000099034.2:p.Phe316LeufsTer113	H-2-Kb	8	110	0	VNLRQLHV	NA	SMM	352.16	NA	NA	148	0.115	477.32	NA	NA	NA	459.74	NA	494.9	NA	352.1599796	NA	568.5124764	22-1_par	-0.414285714	-0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.111	148	0	0	NA	XqA7.3	NA	NA	NA	NA	0.9	3.925120919	POOR GOF (79.6%)	NA	NA	sgMsh2	cell line
chrX	98780991	98780991	A	C	ENSMUST00000033560.8	1	ENSMUSG00000031214	missense	L/V	93	Ophn1	ENSMUST00000033560.8:c.277T>G	ENSMUSP00000033560.2:p.Leu93Val	H-2-Kb	8	4	8	SFKEFAEV	SFKEFAEL	SMM	418.543	117.149	0.28	204	0.039	497.1	128.031	0.258	151.89	866.25	114.5	491	117.1493815	418.5429201	138.9120754	503.1992672	22-1_par	0.1	0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.047	204	0	0	NA	XqC3	NA	NA	NA	NA	0.9	3.925120919	POOR GOF (79.6%)	NA	NA	sgMsh2	cell line
chrX	8874362	8874362	A	G	ENSMUST00000115561.1	5	ENSMUSG00000079697	missense	D/G	37	Gm5751	ENSMUST00000115561.1:c.110A>G	ENSMUSP00000111223.1:p.Asp37Gly	H-2-Kb	9	4	8	RNYIRMTGL	RNYIRMTDL	NetMHCpan	16.1	45.8	2.845	114	0.088	45.581	88.268	1.936	68.08	20.49	45.8	16.1	159.9963223	78.90599489	108.4551052	70.67242604	22-1_par	0.471428571	0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.094	114	0	0	NA	XqA1.1	NA	NA	NA	NA	0.9	3.925120919	POOR GOF (79.6%)	NA	NA	sgMsh2	cell line
chr9	44514177	44514177	C	T	ENSMUST00000215293.1	1	ENSMUSG00000047880	missense	S/N	61	Cxcr5	ENSMUST00000215293.1:c.182G>A	ENSMUSP00000149508.1:p.Ser61Asn	H-2-Kb	9	8	4	VAYNLIFLL	VAYSLIFLL	NetMHCpan	25.6	29.1	1.137	173	0.121	45.518	41.609	0.914	47.89	40.79	29.1	25.6	35.32726369	50.24698412	57.8428922	60.01364431	22-1_par	1.985714286	1.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.137	173	0	0	NA	9qA5.2	chr9-3190600-124127055	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.597490629	sgMsh2	cell line
chrX	50425923	50425923	A	G	ENSMUST00000219631.1	NA	ENSMUSG00000048173	missense	V/A	191	Olfr1324	ENSMUST00000219631.1:c.572T>C	ENSMUSP00000151664.1:p.Val191Ala	H-2-Kb	9	11	1	AIPHFFCDL	VIPHFFCDL	NetMHC	52.59	18.49	0.352	211	0.066	171.785	60.276	0.351	18.49	52.59	21.9	55	98.65293264	293.1635689	104.5321782	288.5692163	22-1_par	0.514285714	1.371428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.072	211	0	0	NA	XqA5	NA	NA	NA	NA	0.9	3.925120919	POOR GOF (79.6%)	NA	NA	sgMsh2	cell line
chr9	50771892	50771892	T	C	ENSMUST00000042391.12	1	ENSMUSG00000037845	missense	M/T	385	Fdxacb1	ENSMUST00000042391.12:c.1154T>C	ENSMUSP00000037082.6:p.Met385Thr	H-2-Kb	9	11	1	TMPAFHETL	MMPAFHETL	NetMHC	53.9	46.33	0.86	193	0.036	169.341	169.705	1.002	46.33	53.9	56.2	60	283.2109234	278.6826939	339.8208329	287.9055255	22-1_par	-0.085714286	-0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.044	193	0	0	NA	9qA5.3	chr9-3190600-124127055	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.191894801	sgMsh2	cell line
chr9	39484869	39484869	G	T	ENSMUST00000077757.6	3	ENSMUSG00000062649	missense	A/D	128	Olfr44	ENSMUST00000077757.6:c.383C>A	ENSMUSP00000076935.6:p.Ala128Asp	H-2-Kb	9	4	8	MAYDRYVDI	MAYDRYVAI	NetMHCpan	40.6	14.4	0.355	491	0.063	56.565	30.259	0.535	27.08	62.05	14.4	40.6	39.27443988	73.46999326	33.43874735	51.07989549	22-1_par	-0.771428571	-0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.068	491	0	0	NA	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.296564692	sgMsh2	cell line
chr8	123270276	123270276	A	G	ENSMUST00000035495.14	1	ENSMUSG00000032815	missense	F/L	1254	Fanca	ENSMUST00000035495.14:c.3760T>C	ENSMUSP00000045217.8:p.Phe1254Leu	H-2-Kb	9	7	5	IALFLFSLM	IALFFFSLM	NetMHCpan	31.8	7.8	0.245	102	0.039	73.531	16.863	0.229	12.44	68.88	7.8	31.8	21.28678139	78.18258038	25.36588388	82.65135921	22-1_par	2.585714286	2.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.048	102	0	0	NA	8qE1	chr8-92827332-128726472	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.209339782	sgMsh2	cell line
chr9	75211127	75211127	A	G	ENSMUST00000123128.7	5	ENSMUSG00000034593	missense	Q/R	1610	Myo5a	ENSMUST00000123128.7:c.4829A>G	ENSMUSP00000116028.1:p.Gln1610Arg	H-2-Kb	9	4	8	LAIQIYQRL	LAIQIYQQL	NetMHCpan	69.3	128.7	1.857	395	0.038	148.591	188.822	1.271	140.37	73.18	128.7	69.3	357.3633412	274.2268658	237.2739171	224.0010221	22-1_par	0	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.043	395	0	0	NA	9qD	chr9-3190600-124127055	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.187533555	sgMsh2	cell line
chr9	40074483	40074483	A	G	ENSMUST00000054051.4	NA	ENSMUSG00000049010	missense	M/V	63	Olfr982	ENSMUST00000054051.4:c.187A>G	ENSMUSP00000052705.3:p.Met63Val	H-2-Kb	9	10	2	PVYHFLGHL	PMYHFLGHL	SMM	53.841	24.838	0.461	202	0.045	72.851	50.049	0.687	65.88	76.16	102.4	81.4	24.83762124	53.84061351	34.21763584	69.54245209	22-1_par	0.328571429	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.052	202	0	0	NA	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.226784764	sgMsh2	cell line
chr9	38449298	38449298	T	C	ENSMUST00000213105.1	5	ENSMUSG00000049334	missense	L/S	142	Olfr902	ENSMUST00000213105.1:c.425T>C	ENSMUSP00000151061.1:p.Leu142Ser	H-2-Kb	9	5	7	ISPQVCSNL	ISPQVCLNL	NetMHC	81.55	170.19	2.087	402	0.017	497.38	667.826	1.343	170.19	81.55	210.4	125.3	1368.075294	1002.559138	1125.252535	869.4607871	22-1_par	0.157142857	0.642857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.025	402	0	0	NA	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.109031137	sgMsh2	cell line
chr8	31236033	31236033	C	T	ENSMUST00000161502.1	1	ENSMUSG00000046152	missense	A/V	272	Fut10	ENSMUST00000161502.1:c.815C>T	ENSMUSP00000125265.1:p.Ala272Val	H-2-Kb	9	11	1	VQYKFILAF	AQYKFILAF	NetMHCpan	73	174.9	2.396	173	0.035	91.45	253.044	2.767	229.96	89.98	174.9	73	276.1277156	92.92017092	307.0789168	111.2371876	22-1_par	1.5	1.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.045	173	0	0	NA	8qA3	chr8-21555893-88741726	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.196256046	sgMsh2	cell line
chr9	75211127	75211127	A	G	ENSMUST00000123128.7	5	ENSMUSG00000034593	missense	Q/R	1610	Myo5a	ENSMUST00000123128.7:c.4829A>G	ENSMUSP00000116028.1:p.Gln1610Arg	H-2-Kb	9	7	5	QIYQRLVRV	QIYQQLVRV	NetMHC	95.66	311.06	3.252	395	0.038	120.461	402.083	3.338	311.06	95.66	730.6	236.6	343.6449768	113.7915466	460.5215948	127.1305717	22-1_par	-0.228571429	-0.042857143	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.043	395	0	0	NA	9qD	chr9-3190600-124127055	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.187533555	sgMsh2	cell line
chrX	71938914	71938914	AT	A	ENSMUST00000101495.2	1	ENSMUSG00000073130	FS	N/X	314	Gm1141	ENSMUST00000101495.2:c.948del	ENSMUSP00000099034.2:p.Phe316LeufsTer113	H-2-Kb	9	10	4	MNFLEIATL	NA	NetMHCpan	39.3	NA	NA	148	0.115	164.966	NA	NA	NA	110.09	NA	39.3	NA	219.8416627	NA	262.57296	22-1_par	1.785714286	1.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.111	148	0	0	NA	XqA7.3	NA	NA	NA	NA	0.9	3.925120919	POOR GOF (79.6%)	NA	NA	sgMsh2	cell line
chr9	44514177	44514177	C	T	ENSMUST00000215293.1	1	ENSMUSG00000047880	missense	S/N	61	Cxcr5	ENSMUST00000215293.1:c.182G>A	ENSMUSP00000149508.1:p.Ser61Asn	H-2-Kb	9	10	2	YNLIFLLGM	YSLIFLLGM	NetMHC	118.17	76.61	0.648	173	0.121	207.632	190.442	0.917	76.61	118.17	220.2	237.2	171.8343562	182.8563304	209.0499173	232.4074256	22-1_par	2.885714286	2.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.137	173	0	0	NA	9qA5.2	chr9-3190600-124127055	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.597490629	sgMsh2	cell line
chrX	50900386	50900386	C	A	ENSMUST00000060650.6	5	ENSMUSG00000036131	missense	K/N	227	Frmd7	ENSMUST00000060650.6:c.681G>T	ENSMUSP00000057103.5:p.Lys227Asn	H-2-Kb	9	4	8	INTFNWANI	INTFNWAKI	NetMHC	143.99	315.18	2.189	125	0.136	348.655	534.864	1.534	315.18	143.99	491.3	209.5	955.2345013	631.1171763	578.428922	487.8092149	22-1_par	0.071428571	0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.145	125	0	0	NA	XqA5	NA	NA	NA	NA	0.9	3.925120919	POOR GOF (79.6%)	NA	NA	sgMsh2	cell line
chrX	96715190	96715190	T	A	ENSMUST00000033554.4	1	ENSMUSG00000031210	missense	D/E	192	Gpr165	ENSMUST00000033554.4:c.576T>A	ENSMUSP00000033554.4:p.Asp192Glu	H-2-Kb	9	8	4	ISLERHRVM	ISLDRHRVM	NetMHC	184.84	314.74	1.703	102	0.029	212.679	308.754	1.452	314.74	184.84	339.7	213.4	302.7680195	274.859024	221.4369036	211.9580913	22-1_par	-0.828571429	-0.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.054	102	0	0	NA	XqC3	NA	NA	NA	NA	0.9	3.925120919	POOR GOF (79.6%)	NA	NA	sgMsh2	cell line
chr9	70718761	70718761	A	G	ENSMUST00000067880.12	1	ENSMUSG00000054693	missense	T/A	104	Adam10	ENSMUST00000067880.12:c.310A>G	ENSMUSP00000063839.6:p.Thr104Ala	H-2-Kb	9	6	6	TSHIYAGHI	TSHIYTGHI	NetMHCpan	175.4	206.7	1.178	105	0.067	379.318	311.683	0.822	226.86	206.24	206.7	175.4	568.9970306	743.2073569	396.5062159	552.3953321	22-1_par	0.385714286	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.086	105	0	0	NA	9qD	chr9-3190600-124127055	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.37506711	sgMsh2	cell line
chr9	35566717	35566717	T	G	ENSMUST00000034615.9	1	ENSMUSG00000032103	missense	L/R	415	Pus3	ENSMUST00000034615.9:c.1244T>G	ENSMUSP00000034615.2:p.Leu415Arg	H-2-Kb	9	4	8	KMRTYKPRM	KMRTYKPLM	NetMHC	255.29	357.36	1.4	152	0.092	331.936	387.715	1.168	357.36	255.29	757.4	810.4	313.4079437	305.5694975	418.0709584	358.3026333	22-1_par	-2.085714286	-2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.101	152	0	0	NA	9qA4	chr9-3190600-124127055	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.440485792	sgMsh2	cell line
chr9	54891129	54891129	CT	C	ENSMUST00000034843.8	1	ENSMUSG00000032293	FS	F/X	385	Ireb2	ENSMUST00000034843.8:c.1157del	ENSMUSP00000034843.7:p.Phe386SerfsTer6	H-2-Kb	9	6	7	GAILSFSLL	GAILSFFPV	SMM	282.56	609.691	2.158	291	0.055	324.775	772.312	2.378	1222.26	316.05	849.2	333.5	609.691303	282.5595563	695.4245209	340.6042008	22-1_par	2.442857143	2.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.053	291	0	0	NA	9qB	chr9-3190600-124127055	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.23114601	sgMsh2	cell line
chrX	71938914	71938914	AT	A	ENSMUST00000101495.2	1	ENSMUSG00000073130	FS	N/X	314	Gm1141	ENSMUST00000101495.2:c.948del	ENSMUSP00000099034.2:p.Phe316LeufsTer113	H-2-Kb	9	77	0	YLYRHVKYL	NA	NetMHCpan	108	NA	NA	148	0.115	461.883	NA	NA	NA	316.68	NA	108	NA	674.6988967	NA	607.0856956	22-1_par	-0.885714286	-0.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.111	148	0	0	NA	XqA7.3	NA	NA	NA	NA	0.9	3.925120919	POOR GOF (79.6%)	NA	NA	sgMsh2	cell line
chr8	123270276	123270276	A	G	ENSMUST00000035495.14	1	ENSMUSG00000032815	missense	F/L	1254	Fanca	ENSMUST00000035495.14:c.3760T>C	ENSMUSP00000045217.8:p.Phe1254Leu	H-2-Kb	9	6	6	LIALFLFSL	LIALFFFSL	SMM	205.641	92.493	0.45	102	0.039	311.584	114.776	0.368	101.54	323.08	166.6	801.8	92.49324152	205.6411387	128.0117987	300.0889473	22-1_par	2.571428571	3.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.048	102	0	0	NA	8qE1	chr8-92827332-128726472	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.209339782	sgMsh2	cell line
chr8	31236033	31236033	C	T	ENSMUST00000161502.1	1	ENSMUSG00000046152	missense	A/V	272	Fut10	ENSMUST00000161502.1:c.815C>T	ENSMUSP00000125265.1:p.Ala272Val	H-2-Kb	9	9	3	VIVQYKFIL	VIAQYKFIL	NetMHCpan	231.2	326.8	1.413	173	0.035	288.652	359.836	1.247	677.1	343.28	326.8	231.2	302.7680195	272.3391013	392.8710251	304.9650004	22-1_par	0.942857143	1.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.045	173	0	0	NA	8qA3	chr8-21555893-88741726	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.196256046	sgMsh2	cell line
chr9	19566844	19566844	A	T	ENSMUST00000072419.2	NA	ENSMUSG00000095667	missense	F/Y	180	Olfr854	ENSMUST00000072419.2:c.539T>A	ENSMUSP00000072248.2:p.Phe180Tyr	H-2-Kb	9	7	5	EIPSYFCEL	EIPSFFCEL	NetMHCpan	335.9	199.2	0.593	288	0.069	486.114	364.668	0.75	292.71	435.06	199.2	335.9	436.6264089	537.1678354	667.1907245	709.9863514	22-1_par	0.271428571	0.371428571	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.073	288	0	0	NA	9qA3	chr9-3190600-124127055	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.318370919	sgMsh2	cell line
chr8	13838081	13838081	T	G	ENSMUST00000071308.5	NA	ENSMUSG00000057116	missense	Q/H	3	AF366264	ENSMUST00000071308.5:c.9A>C	ENSMUSP00000096518.2:p.Gln3His	H-2-Kb	9	1	3	MWHPKLPGL	MWQPKLPGL	SMM	225.481	458.258	2.032	157	0.146	428.817	802.36	1.871	762.84	445.3	1513.1	981.7	458.2579416	225.4810248	841.8796271	412.3348098	22-1_par	-0.442857143	-0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.153	157	0	0	NA	8qA1.1	chr8-3154030-19497986	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.667270556	sgMsh2	cell line
chr10	80417558	80417558	G	A	ENSMUST00000105342.7	1	ENSMUSG00000020167	missense	P/L	213	Tcf3	ENSMUST00000105342.7:c.638C>T	ENSMUSP00000100979.1:p.Pro213Leu	H-2-Db	9	8	4	SAYLSPFYV	SAYPSPFYV	NetMHC	188.93	717.71	3.799	36	0.083	282.94	792.955	2.803	717.71	188.93	603.7	224.2	868.2004368	341.6803474	1120.908081	398.6300187	22-2_par	0.828571429	0.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.129	36	0	0	NA	10qC1	chr10-74325760-82492848	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.579895605	sgMsh2	cell line
chr1	88201232	88201232	G	T	ENSMUST00000049289.8	1	ENSMUSG00000090171	missense	R/M	199	Ugt1a2	ENSMUST00000049289.8:c.596G>T	ENSMUSP00000037258.8:p.Arg199Met	H-2-Db	9	3	9	SYIPNLLTM	SYIPNLLTR	SMM	141.456	9808.893	69.343	229	0.066	329.086	16904.547	51.368	34638.37	837.43	24000.2	422.9	9808.893066	141.4555527	7990.427218	235.2718676	22-2_par	1.171428571	1.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.065	229	0	0	NA	1qD	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.29219546	sgMsh2	cell line
chr10	79396536	79396536	A	G	ENSMUST00000170596.3	5	ENSMUSG00000091468	missense	M/V	790	Vmn2r82	ENSMUST00000170596.3:c.2368A>G	ENSMUSP00000130114.2:p.Met790Val	H-2-Kb	8	5	7	KSLAFSVL	KSLAFSML	NetMHC	15.26	5.78	0.379	278	0.101	25.15	14.375	0.572	5.78	15.26	11.7	22.9	17.05061311	27.39933359	19.48677632	31.24208431	22-2_par	2.114285714	2.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.09	278	0	0	NA	10qC1	chr10-74325760-82492848	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.404578329	sgMsh2	cell line
chr10	41927069	41927069	C	T	ENSMUST00000095729.10	5	ENSMUSG00000071324	missense	G/D	536	Armc2	ENSMUST00000095729.10:c.1607G>A	ENSMUSP00000093397.4:p.Gly536Asp	H-2-Kb	8	6	6	IVFILDNL	IVFILGNL	NetMHCpan	25.2	9.1	0.361	33	0.152	30.678	11.496	0.375	7.86	27.1	9.1	25.2	14.5794117	34.25626424	13.89120754	38.43616066	22-2_par	1.728571429	1.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.182	33	0	0	NA	10qB2	chr10-33467866-74324794	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.818147287	sgMsh2	cell line
chr10	50707713	50707713	T	G	ENSMUST00000035606.9	5	ENSMUSG00000038774	missense	S/R	919	Ascc3	ENSMUST00000035606.9:c.2757T>G	ENSMUSP00000036726.8:p.Ser919Arg	H-2-Kb	8	8	4	RWMRYTYL	RWMSYTYL	NetMHC	35.09	62.24	1.774	122	0.033	96.071	145.773	1.517	62.24	35.09	142.7	93.8	202.6469166	136.0629867	148.8469706	98.3422182	22-2_par	-0.428571429	-0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.049	122	0	0	NA	10qB3	chr10-33467866-74324794	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.220270423	sgMsh2	cell line
chr10	79396536	79396536	A	G	ENSMUST00000170596.3	5	ENSMUSG00000091468	missense	M/V	790	Vmn2r82	ENSMUST00000170596.3:c.2368A>G	ENSMUSP00000130114.2:p.Met790Val	H-2-Kb	8	10	2	SVLVFCSV	SMLVFCSV	NetMHC	38.12	33.24	0.872	278	0.101	66.295	74.295	1.121	33.24	38.12	44.9	42.9	103.6907462	89.68916897	111.8767908	90.93686959	22-2_par	2.985714286	2.985714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.09	278	0	0	NA	10qC1	chr10-74325760-82492848	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.404578329	sgMsh2	cell line
chr1	161090442	161090442	AT	A	ENSMUST00000111611.7	1	ENSMUSG00000026705	FS	E/X	600	Klhl20	ENSMUST00000111611.7:c.1800del	ENSMUSP00000107238.1:p.Glu600AspfsTer34	H-2-Kb	8	30	0	KSLDFEAL	NA	NetMHC	38.25	NA	NA	117	0.111	72.883	NA	NA	NA	38.25	NA	77.1	NA	68.66572344	NA	82.17505435	22-2_par	0.628571429	0.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.104	117	0	0	NA	1qH2.1	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.467512736	sgMsh2	cell line
chr10	50707713	50707713	T	G	ENSMUST00000035606.9	5	ENSMUSG00000038774	missense	S/R	919	Ascc3	ENSMUST00000035606.9:c.2757T>G	ENSMUSP00000036726.8:p.Ser919Arg	H-2-Kb	8	10	2	MRYTYLYV	MSYTYLYV	SMM	99.71	7.027	0.07	122	0.033	138.033	6.263	0.045	3.9	162.11	5.5	201.6	7.026515361	99.71029474	8.142166892	113.9567356	22-2_par	-0.157142857	-0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.049	122	0	0	NA	10qB3	chr10-33467866-74324794	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.220270423	sgMsh2	cell line
chr1	93325517	93325517	T	G	ENSMUST00000027493.3	1	ENSMUSG00000026274	missense	I/L	383	Pask	ENSMUST00000027493.3:c.1147A>C	ENSMUSP00000027493.3:p.Ile383Leu	H-2-Kb	8	7	5	ITFLLPGF	ITFLIPGF	NetMHCpan	94.5	128.2	1.357	105	0.048	209.349	481.912	2.302	365.77	163.58	128.2	94.5	976.6523514	326.3923717	598.0534499	255.1173529	22-2_par	1.5	1.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.068	105	0	0	NA	1qD	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.305681404	sgMsh2	cell line
chr1	91344396	91344396	C	A	ENSMUST00000088904.9	1	ENSMUSG00000049515	missense	L/M	493	Espnl	ENSMUST00000088904.9:c.1477C>A	ENSMUSP00000086294.3:p.Leu493Met	H-2-Kb	8	10	2	IMGPFGEL	ILGPFGEL	NetMHCpan	154.1	500.4	3.247	45	0.178	227.579	611.814	2.688	1424.82	178.63	500.4	154.1	675.6783445	296.9887511	547.948825	276.528565	22-2_par	0.371428571	0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.176	45	0	0	NA	1qD	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.791175399	sgMsh2	cell line
chr1	72652440	72652440	C	A	ENSMUST00000053499.5	1	ENSMUSG00000039342	missense	A/S	1121	Ankar	ENSMUST00000053499.5:c.3361G>T	ENSMUSP00000054056.4:p.Ala1121Ser	H-2-Kb	8	6	6	VAFSLSCI	VAFSLACI	NetMHCpan	151	79.1	0.524	116	0.103	274.032	112.554	0.411	89.67	226.15	79.1	151	159.1255801	359.5340277	135.4378341	321.9141004	22-2_par	1.971428571	1.971428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.123	116	0	0	NA	1qC3	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.552923716	sgMsh2	cell line
chr1	155863551	155863551	T	C	ENSMUST00000138762.7	5	ENSMUSG00000033671	missense	K/R	2182	Cep350	ENSMUST00000138762.7:c.6545A>G	ENSMUSP00000120085.1:p.Lys2182Arg	H-2-Kb	8	7	5	SAYARRGV	SAYAKRGV	NetMHC	253.02	541.79	2.141	83	0.096	426.208	730.651	1.714	541.79	253.02	777.8	406	683.502331	446.4162552	793.8528349	510.1994663	22-2_par	-0.414285714	-0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.115	83	0	0	NA	1qG3	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.516961198	sgMsh2	cell line
chr1	40600898	40600898	A	G	ENSMUST00000027233.8	1	ENSMUSG00000026065	missense	I/M	283	Slc9a4	ENSMUST00000027233.8:c.849A>G	ENSMUSP00000027233.7:p.Ile283Met	H-2-Kb	8	10	2	IMFGFISA	IIFGFISA	NetMHCpan	123.1	178.2	1.448	218	0.05	187.141	146.606	0.783	260.69	265.85	178.2	123.1	115.0111643	208.8045702	95.8826437	165.4778997	22-2_par	1.8	2.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.056	218	0	0	NA	1qB	chr1-3216742-43772110	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.251737627	sgMsh2	cell line
chr1	34443695	34443695	G	A	ENSMUST00000027303.13	1	ENSMUSG00000026127	missense	V/M	147	Imp4	ENSMUST00000027303.13:c.439G>A	ENSMUSP00000027303.7:p.Val147Met	H-2-Kb	8	11	1	MGLIVSHL	VGLIVSHL	NetMHCpan	232.7	96.1	0.413	93	0.065	269.731	107.714	0.399	53.12	294.6	96.1	232.7	119.3273511	254.5305993	134.5054866	284.9311953	22-2_par	1.7	1.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.075	93	0	0	NA	1qB	chr1-3216742-43772110	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.337148607	sgMsh2	cell line
chr1	151403020	151403020	T	C	ENSMUST00000064771.11	1	ENSMUSG00000052748	missense	N/S	462	Swt1	ENSMUST00000064771.11:c.1385A>G	ENSMUSP00000067516.5:p.Asn462Ser	H-2-Kb	8	6	6	IHFINSSL	IHFINNSL	SMMPMBEC	137.639	237.542	1.726	72	0.194	155.545	291.871	1.876	809.69	359.69	346.2	166.3	234.2825811	144.7904774	237.5417764	137.6385219	22-2_par	0.4	0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.211	72	0	0	NA	1qG1	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.948511415	sgMsh2	cell line
chr1	40600898	40600898	A	G	ENSMUST00000027233.8	1	ENSMUSG00000026065	missense	I/M	283	Slc9a4	ENSMUST00000027233.8:c.849A>G	ENSMUSP00000027233.7:p.Ile283Met	H-2-Kb	8	8	4	FGIMFGFI	FGIIFGFI	NetMHCpan	175.3	273.7	1.561	218	0.05	324.634	337.887	1.041	614.4	366.95	273.7	175.3	354.6010359	387.0258739	321.1737185	282.3189304	22-2_par	2.242857143	2.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.056	218	0	0	NA	1qB	chr1-3216742-43772110	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.251737627	sgMsh2	cell line
chr1	161090442	161090442	AT	A	ENSMUST00000111611.7	1	ENSMUSG00000026705	FS	E/X	600	Klhl20	ENSMUST00000111611.7:c.1800del	ENSMUSP00000107238.1:p.Glu600AspfsTer34	H-2-Kb	8	25	0	LLYIWKSL	NA	NetMHCpan	109.6	NA	NA	117	0.111	295.073	NA	NA	NA	476.19	NA	109.6	NA	365.3759857	NA	224.7708563	22-2_par	0.742857143	0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.104	117	0	0	NA	1qH2.1	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.467512736	sgMsh2	cell line
chr10	78577345	78577345	C	A	ENSMUST00000105384.4	1	ENSMUSG00000032763	missense	P/Q	203	Ilvbl	ENSMUST00000105384.4:c.608C>A	ENSMUSP00000101023.3:p.Pro203Gln	H-2-Kb	8	11	1	QVFVELPL	PVFVELPL	SMMPMBEC	342.563	1428.039	4.169	131	0.069	373.243	2674.661	7.166	4501.09	493.34	3313.5	347.7	2035.822922	398.7860888	1428.038776	342.5626424	22-2_par	1.957142857	1.957142857	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.091	131	0	0	NA	10qC1	chr10-74325760-82492848	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.409073644	sgMsh2	cell line
chr1	167844682	167844682	T	C	ENSMUST00000028003.8	1	ENSMUSG00000026686	missense	Y/H	290	Lmx1a	ENSMUST00000028003.8:c.868T>C	ENSMUSP00000028003.6:p.Tyr290His	H-2-Kb	8	7	5	IMNPHTTL	IMNPYTTL	NetMHCpan	332.8	48.1	0.145	53	0.226	427.156	76.948	0.18	59.98	736.46	48.1	332.8	93.91608928	363.6972355	113.433152	490.6140712	22-2_par	-0.571428571	-0.471428571	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.232	53	0	0	NA	1qH2.3	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	1	sgMsh2	cell line
chr10	51626505	51626505	C	T	ENSMUST00000020062.3	1	ENSMUSG00000019905	missense	A/T	421	Gprc6a	ENSMUST00000020062.3:c.1261G>A	ENSMUSP00000020062.3:p.Ala421Thr	H-2-Kb	8	5	7	IQLAVFTL	IQLAVFAL	SMM	310.985	186.956	0.601	99	0.091	416.809	297.395	0.714	362.12	1019.35	362.6	467.4	186.956255	310.9853997	232.6697911	366.2182643	22-2_par	1.742857143	1.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.109	99	0	0	NA	10qB3	chr10-33467866-74324794	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.489989309	sgMsh2	cell line
chr1	64736395	64736395	T	C	ENSMUST00000063982.6	1	ENSMUSG00000045005	missense	Q/R	69	Fzd5	ENSMUST00000063982.6:c.206A>G	ENSMUSP00000067783.5:p.Gln69Arg	H-2-Kb	8	8	4	EVHRFWPL	EVHQFWPL	SMMPMBEC	222.71	273.363	1.227	83	0.12	308.118	450.694	1.463	3108.74	2005.47	522.3	295.8	379.0879676	320.4350395	273.3631687	222.7101447	22-2_par	0.085714286	0.085714286	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.111	83	0	0	NA	1qC2	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.498979939	sgMsh2	cell line
chr10	50707713	50707713	T	G	ENSMUST00000035606.9	5	ENSMUSG00000038774	missense	S/R	919	Ascc3	ENSMUST00000035606.9:c.2757T>G	ENSMUSP00000036726.8:p.Ser919Arg	H-2-Kb	9	7	5	VRWMRYTYL	VRWMSYTYL	NetMHC	27.85	97.7	3.508	122	0.033	45.758	160.314	3.504	97.7	27.85	159.1	74.6	171.8343562	49.90108631	161.5288124	41.61500968	22-2_par	-0.428571429	-0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.049	122	0	0	NA	10qB3	chr10-33467866-74324794	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.220270423	sgMsh2	cell line
chr1	40600898	40600898	A	G	ENSMUST00000027233.8	1	ENSMUSG00000026065	missense	I/M	283	Slc9a4	ENSMUST00000027233.8:c.849A>G	ENSMUSP00000027233.7:p.Ile283Met	H-2-Kb	9	10	2	IMFGFISAF	IIFGFISAF	SMM	29.861	66.851	2.239	218	0.05	34.382	55.531	1.615	44.21	37.25	41	32.1	66.85132201	29.86138865	75.90143731	36.66485738	22-2_par	1.928571429	2.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.056	218	0	0	NA	1qB	chr1-3216742-43772110	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.251737627	sgMsh2	cell line
chr1	93725229	93725229	G	A	ENSMUST00000190116.6	1	ENSMUSG00000026279	missense	P/L	435	Thap4	ENSMUST00000190116.6:c.1304C>T	ENSMUSP00000140761.1:p.Pro435Leu	H-2-Kb	9	11	1	LTLQPFQYL	PTLQPFQYL	NetMHC	111.28	2984.49	26.82	71	0.141	337.326	2030.788	6.02	2984.49	111.28	3307.6	195.9	772.8763178	478.7513372	1077.085055	541.0656958	22-2_par	0.071428571	0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.175	71	0	0	NA	1qD	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.786680084	sgMsh2	cell line
chr10	79396536	79396536	A	G	ENSMUST00000170596.3	5	ENSMUSG00000091468	missense	M/V	790	Vmn2r82	ENSMUST00000170596.3:c.2368A>G	ENSMUSP00000130114.2:p.Met790Val	H-2-Kb	9	5	7	KSLAFSVLV	KSLAFSMLV	NetMHC	185.24	75.54	0.408	278	0.101	339.065	278.679	0.822	75.54	185.24	128.7	227.2	428.6570788	450.9309038	681.1613539	611.2938126	22-2_par	2.828571429	2.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.09	278	0	0	NA	10qC1	chr10-74325760-82492848	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.404578329	sgMsh2	cell line
chr1	25457004	25457004	T	C	ENSMUST00000151309.7	1	ENSMUSG00000033569	missense	T/A	699	Adgrb3	ENSMUST00000151309.7:c.2095A>G	ENSMUSP00000116231.1:p.Thr699Ala	H-2-Kb	9	6	6	NSYLMAGNV	NSYLMTGNV	NetMHC	218.81	258.97	1.184	210	0.062	450.324	387.165	0.86	258.97	218.81	240.7	227.5	515.3591605	673.1471323	604.2963902	841.8796271	22-2_par	0.928571429	0.928571429	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.07	210	0	0	NA	1qA5	chr1-3216742-43772110	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.314672034	sgMsh2	cell line
chr1	83276482	83276482	T	C	ENSMUST00000160953.7	1	ENSMUSG00000026163	missense	Y/C	1182	Sphkap	ENSMUST00000160953.7:c.3545A>G	ENSMUSP00000124872.1:p.Tyr1182Cys	H-2-Kb	9	4	8	ITEEFYRCM	ITEEFYRYM	NetMHC	261.54	52.09	0.199	224	0.103	334.481	127.108	0.38	52.09	261.54	67.9	428.2	216.825322	392.7443988	186.3159349	276.216743	22-2_par	-0.8	-0.8	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.102	224	0	0	NA	1qC5	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.458522106	sgMsh2	cell line
chr1	172376769	172376769	T	C	ENSMUST00000052455.3	NA	ENSMUSG00000050229	missense	V/A	24	Pigm	ENSMUST00000052455.3:c.71T>C	ENSMUSP00000052838.2:p.Val24Ala	H-2-Kb	9	11	1	AAFLARVAL	VAFLARVAL	NetMHCpan	224.4	72.1	0.321	20	0.2	331.866	107.94	0.325	84.02	271.89	72.1	224.4	131.8590675	391.8411118	160.4168559	442.8432201	22-2_par	1.957142857	1.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.263	20	0	0	NA	1qH3	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	1	sgMsh2	cell line
chr1	39650882	39650882	A	G	ENSMUST00000053355.5	1	ENSMUSG00000050967	missense	L/P	20	Creg2	ENSMUST00000053355.5:c.59T>C	ENSMUSP00000052871.4:p.Leu20Pro	H-2-Kb	9	8	4	SWLPCCSAL	SWLLCCSAL	NetMHC	273.29	160.57	0.588	23	0.174	441.021	266.107	0.603	160.57	273.29	983.2	1131	211.4024421	355.7214058	320.8115533	526.3201534	22-2_par	1.714285714	1.714285714	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.209	23	0	0	NA	1qB	chr1-3216742-43772110	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.939520786	sgMsh2	cell line
chr1	72652440	72652440	C	A	ENSMUST00000053499.5	1	ENSMUSG00000039342	missense	A/S	1121	Ankar	ENSMUST00000053499.5:c.3361G>T	ENSMUSP00000054056.4:p.Ala1121Ser	H-2-Kb	9	6	6	VAFSLSCIV	VAFSLACIV	SMM	198.203	324.422	1.637	116	0.103	287.2	384.476	1.339	444.53	301.2	260.5	273.2	324.4217779	198.2028979	534.872168	365.8053055	22-2_par	2.314285714	2.314285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.123	116	0	0	NA	1qC3	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.552923716	sgMsh2	cell line
chr10	80417558	80417558	G	A	ENSMUST00000105342.7	1	ENSMUSG00000020167	missense	P/L	213	Tcf3	ENSMUST00000105342.7:c.638C>T	ENSMUSP00000100979.1:p.Pro213Leu	H-2-Kb	9	8	4	SAYLSPFYV	SAYPSPFYV	NetMHCpan	279.2	444.3	1.591	36	0.083	327.825	573.13	1.748	555.91	304.81	444.3	279.2	590.3505878	350.8407252	927.3635031	565.2622723	22-2_par	0.828571429	0.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.129	36	0	0	NA	10qC1	chr10-74325760-82492848	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.579895605	sgMsh2	cell line
chr1	91344396	91344396	C	A	ENSMUST00000088904.9	1	ENSMUSG00000049515	missense	L/M	493	Espnl	ENSMUST00000088904.9:c.1477C>A	ENSMUSP00000086294.3:p.Leu493Met	H-2-Kb	9	9	3	AIMGPFGEL	AILGPFGEL	NetMHCpan	304.3	444.2	1.46	45	0.178	390.336	469.888	1.204	346.43	324.52	444.2	304.3	495.5756965	456.1524376	581.0988286	534.872168	22-2_par	0.371428571	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.176	45	0	0	NA	1qD	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.791175399	sgMsh2	cell line
chr1	21461593	21461593	T	C	ENSMUST00000115300.7	1	ENSMUSG00000028033	missense	N/S	422	Kcnq5	ENSMUST00000115300.7:c.1265A>G	ENSMUSP00000110955.1:p.Asn422Ser	H-2-Kb	9	10	2	SSKQKFFRV	SNKQKFFRV	NetMHC	327.28	524.73	1.603	86	0.047	370.551	479.175	1.293	524.73	327.28	605.5	458.2	433.6206938	407.4834739	370.8941642	333.6184037	22-2_par	-0.857142857	-0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.062	86	0	0	NA	1qA4	chr1-3216742-43772110	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.278709515	sgMsh2	cell line
chr1	40600898	40600898	A	G	ENSMUST00000027233.8	1	ENSMUSG00000026065	missense	I/M	283	Slc9a4	ENSMUST00000027233.8:c.849A>G	ENSMUSP00000027233.7:p.Ile283Met	H-2-Kb	9	6	6	VFFGIMFGF	VFFGIIFGF	SMM	342.855	416.975	1.216	218	0.05	406.019	555.235	1.368	585.36	409.09	2204.1	1955.1	416.9749833	342.8546153	525.1096507	402.9489236	22-2_par	2	2.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.056	218	0	0	NA	1qB	chr1-3216742-43772110	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.251737627	sgMsh2	cell line
chr10	78204293	78204293	T	A	ENSMUST00000000384.7	1	ENSMUSG00000000374	missense	E/V	608	Trappc10	ENSMUST00000000384.7:c.1823A>T	ENSMUSP00000000384.6:p.Glu608Val	H-2-Kb	9	10	2	VVITVCSQM	VEITVCSQM	NetMHCpan	397.1	7892.7	19.876	188	0.074	471.877	4506.684	9.551	6333.52	445.73	7892.7	397.1	2679.847002	706.4964761	1722.860048	498.023688	22-2_par	1.157142857	2.585714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.087	188	0	0	NA	10qC1	chr10-74325760-82492848	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.391092385	sgMsh2	cell line
chr1	93325517	93325517	T	G	ENSMUST00000027493.3	1	ENSMUSG00000026274	missense	I/L	383	Pask	ENSMUST00000027493.3:c.1147A>C	ENSMUSP00000027493.3:p.Ile383Leu	H-2-Kb	9	10	2	LLPGFYHYM	LIPGFYHYM	NetMHCpan	114.9	52.2	0.454	105	0.048	483.391	103.408	0.214	62.9	475.75	52.2	114.9	143.916305	491.0322312	188.4733717	544.816184	22-2_par	-0.442857143	0.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.068	105	0	0	NA	1qD	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.305681404	sgMsh2	cell line
chr1	91344396	91344396	C	A	ENSMUST00000088904.9	1	ENSMUSG00000049515	missense	L/M	493	Espnl	ENSMUST00000088904.9:c.1477C>A	ENSMUSP00000086294.3:p.Leu493Met	H-2-Kb	9	10	2	IMGPFGELL	ILGPFGELL	SMM	382.041	2918.166	7.638	45	0.178	456.069	2667.509	5.849	3485.33	508.26	1633.5	512.6	2918.166046	382.0410236	2416.851686	403.8778168	22-2_par	0.642857143	0.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.176	45	0	0	NA	1qD	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.791175399	sgMsh2	cell line
chr1	128197091	128197091	C	T	ENSMUST00000036288.10	5	ENSMUSG00000056211	missense	H/Y	715	R3hdm1	ENSMUST00000036288.10:c.2143C>T	ENSMUSP00000043103.4:p.His715Tyr	H-2-Kb	9	9	3	AQYTGYQVM	AQHTGYQVM	NetMHCpan	376	4620.3	12.288	130	0.046	459.418	3782.734	8.234	7352.65	726.91	4620.3	376	2945.167504	517.7379503	2178.963724	401.0975415	22-2_par	-0.157142857	-0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.069	130	0	0	NA	1qE3	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.310176719	sgMsh2	cell line
chr1	126033804	126033804	G	A	ENSMUST00000112583.7	5	ENSMUSG00000049690	missense	T/M	324	Nckap5	ENSMUST00000112583.7:c.971C>T	ENSMUSP00000108202.1:p.Thr324Met	H-2-Kb	10	8	4	SSYMWQDRKL	SSYTWQDRKL	NetMHC	103.86	167.94	1.617	25	0.16	450.614	553.388	1.228	167.94	103.86	279.1	153.3	842.0347213	912.704097	827.6753097	747.928358	22-2_par	-1.514285714	-1.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.19	25	0	0	NA	1qE3	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.854109805	sgMsh2	cell line
chr11	77473077	77473077	C	T	ENSMUST00000092892.9	5	ENSMUSG00000037907	missense	A/T	398	Ankrd13b	ENSMUST00000092892.9:c.1192G>A	ENSMUSP00000090568.3:p.Ala398Thr	H-2-Db	9	6	6	MAVSNTLFA	MAVSNALFA	NetMHC	87.52	75.58	0.864	32	0.5	171.015	164.646	0.963	75.58	87.52	144.1	159.8	185.1910525	182.2300524	188.178499	195.6906159	22-2_par	1.085714286	1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.458	32	0	0	NA	11qB5	chr11-69590981-82929860	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	2	1	sgMsh2	cell line
chr10	128581804	128581804	T	C	ENSMUST00000082059.6	1	ENSMUSG00000018166	missense	I/V	357	Erbb3	ENSMUST00000082059.6:c.1069A>G	ENSMUSP00000080716.6:p.Ile357Val	H-2-Db	9	10	2	KVLGNLDFL	KILGNLDFL	NetMHCpan	73.9	177.7	2.405	193	0.067	121.212	223.294	1.842	161.92	88.76	177.7	73.9	300.3447189	156.8989366	268.8871203	153.6632449	22-2_par	0.971428571	1.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe	3	0.075	193	0	0	NA	10qD3	chr10-82619830-129526639	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.337148607	sgMsh2	cell line
chr10	128581806	128581806	T	A	ENSMUST00000082059.6	1	ENSMUSG00000018166	missense	K/M	356	Erbb3	ENSMUST00000082059.6:c.1067A>T	ENSMUSP00000080716.6:p.Lys356Met	H-2-Db	9	11	1	MILGNLDFL	KILGNLDFL	NetMHCpan	113.9	177.7	1.56	193	0.067	210.113	223.294	1.063	161.92	202.17	177.7	113.9	300.3447189	284.8524768	268.8871203	218.0569835	22-2_par	0.971428571	1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe	3	0.075	193	0	0	NA	10qD3	chr10-82619830-129526639	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.337148607	sgMsh2	cell line
chr10	107652598	107652598	A	G	ENSMUST00000050702.8	2	ENSMUSG00000035916	missense	F/L	993	Ptprq	ENSMUST00000050702.8:c.2977T>C	ENSMUSP00000058572.7:p.Phe993Leu	H-2-Db	9	10	2	TLVQNFTLL	TFVQNFTLL	NetMHC	222.47	628.07	2.823	86	0.105	305.37	474.19	1.553	628.07	222.47	1071.9	237	264.0097708	452.5014758	320.3096331	373.7403604	22-2_par	0.985714286	0.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.097	86	0	0	NA	10qD1	chr10-82619830-129526639	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.436045532	sgMsh2	cell line
chr10	88503631	88503631	A	G	ENSMUST00000117440.7	5	ENSMUSG00000060002	missense	V/A	76	Chpt1	ENSMUST00000117440.7:c.227T>C	ENSMUSP00000112708.1:p.Val76Ala	H-2-Db	9	6	6	LAINLATTL	LAINLVTTL	SMM	173.628	195.713	1.127	108	0.102	238.575	278.13	1.166	331.06	253.5	607.2	759.5	195.7131469	173.6280949	225.2008368	223.6505652	22-2_par	1.285714286	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.108	108	0	0	NA	10qC1	chr10-82619830-129526639	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.485493995	sgMsh2	cell line
chr11	53997431	53997431	C	A	ENSMUST00000020586.6	1	ENSMUSG00000020334	missense	R/M	257	Slc22a4	ENSMUST00000020586.6:c.770G>T	ENSMUSP00000020586.6:p.Arg257Met	H-2-Db	9	3	9	FAYFIRDWM	FAYFIRDWR	NetMHCpan	160.9	18173.9	112.952	73	0.082	410.659	23828.369	58.025	24558.97	274.78	18173.9	160.9	37898.32362	546.5375429	23097.76721	680.0956546	22-2_par	-0.142857143	0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.091	73	0	0	NA	11qB1.3	chr11-3355458-69578588	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.409073644	sgMsh2	cell line
chr11	77473077	77473077	C	T	ENSMUST00000092892.9	5	ENSMUSG00000037907	missense	A/T	398	Ankrd13b	ENSMUST00000092892.9:c.1192G>A	ENSMUSP00000090568.3:p.Ala398Thr	H-2-Db	11	6	6	MAVSNTLFAKL	MAVSNALFAKL	NetMHCpan	173.8	166.1	0.956	32	0.5	408.301	295.115	0.723	302.45	374.97	166.1	173.8	287.7795969	441.6314568	1039.584989	1302.746755	22-2_par	0.585714286	1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.458	32	0	0	NA	11qB5	chr11-69590981-82929860	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	2	1	sgMsh2	cell line
chr11	77473077	77473077	C	T	ENSMUST00000092892.9	5	ENSMUSG00000037907	missense	A/T	398	Ankrd13b	ENSMUST00000092892.9:c.1192G>A	ENSMUSP00000090568.3:p.Ala398Thr	H-2-Kb	8	9	3	SNTLFAKL	SNALFAKL	NetMHC	9.08	9.74	1.073	32	0.5	24.546	20.062	0.817	9.74	9.08	11.3	16.9	28.82305431	32.19141004	37.30267702	37.64783444	22-2_par	0.585714286	0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.458	32	0	0	NA	11qB5	chr11-69590981-82929860	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	2	1	sgMsh2	cell line
chr11	72888293	72888293	A	G	ENSMUST00000069395.6	5	ENSMUSG00000055670	missense	K/R	1860	Zzef1	ENSMUST00000069395.6:c.5579A>G	ENSMUSP00000068790.5:p.Lys1860Arg	H-2-Kb	8	11	1	RKYSYGHL	KKYSYGHL	NetMHC	26.69	28.91	1.083	88	0.17	32.154	32.045	0.997	28.91	26.69	141.8	186	32.33999884	32.19141004	31.74972734	32.11737185	22-2_par	-1.014285714	-1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.191	88	0	0	NA	11qB4	chr11-69590981-82929860	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.85860512	sgMsh2	cell line
chr10	88809729	88809729	C	A	ENSMUST00000004470.8	5	ENSMUSG00000004356	missense	G/V	554	Utp20	ENSMUST00000004470.8:c.1661G>T	ENSMUSP00000004470.7:p.Gly554Val	H-2-Kb	8	11	1	VSFGKGHL	GSFGKGHL	NetMHCpan	44.3	1760.1	39.731	161	0.081	80.514	1681.193	20.881	3883.08	74.98	1760.1	44.3	1602.28586	100.1705365	898.9592386	86.04784535	22-2_par	-0.3	-0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.1	161	0	0	NA	10qC1	chr10-82619830-129526639	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.449531476	sgMsh2	cell line
chr10	107652598	107652598	A	G	ENSMUST00000050702.8	2	ENSMUSG00000035916	missense	F/L	993	Ptprq	ENSMUST00000050702.8:c.2977T>C	ENSMUSP00000058572.7:p.Phe993Leu	H-2-Kb	8	11	1	LVQNFTLL	FVQNFTLL	NetMHC	75.16	83.48	1.111	86	0.105	148.193	143.635	0.969	83.48	75.16	136.7	87.1	150.5705372	209.2859144	179.3659491	210.7366151	22-2_par	0.985714286	0.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.097	86	0	0	NA	10qD1	chr10-82619830-129526639	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.436045532	sgMsh2	cell line
chr11	74663381	74663381	T	C	ENSMUST00000092915.11	1	ENSMUSG00000020741	missense	Y/H	655	Cluh	ENSMUST00000092915.11:c.1963T>C	ENSMUSP00000090593.5:p.Tyr655His	H-2-Kb	8	10	2	RHLLFMKL	RYLLFMKL	NetMHC	81.56	171.98	2.109	31	0.226	126.779	181.866	1.435	171.98	81.56	168.1	160.2	191.7520431	119.0529058	195.3169797	134.5054866	22-2_par	1.285714286	1.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.241	31	0	0	NA	11qB5	chr11-69590981-82929860	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	1	sgMsh2	cell line
chr11	73453972	73453972	T	C	ENSMUST00000121209.2	3	ENSMUSG00000072709	missense	K/R	80	Olfr380	ENSMUST00000121209.2:c.239A>G	ENSMUSP00000112462.1:p.Lys80Arg	H-2-Kb	8	5	7	SSVTMPRL	SSVTMPKL	NetMHC	96.62	424.31	4.392	563	0.085	137.639	384.896	2.796	424.31	96.62	344.1	148.6	393.3145385	137.6385219	376.4783444	137.6385219	22-2_par	0.328571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.083	563	0	0	NA	11qB4	chr11-69590981-82929860	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.373111125	sgMsh2	cell line
chr11	76672655	76672655	T	A	ENSMUST00000056184.1	NA	ENSMUSG00000044243	missense	V/E	36	Bhlha9	ENSMUST00000056184.1:c.107T>A	ENSMUSP00000050516.1:p.Val36Glu	H-2-Kb	8	5	7	AGRNFGEL	AGRNFGVL	NetMHC	165	302.89	1.836	19	0.263	237.703	251.378	1.058	302.89	165	621.2	561.4	181.861178	228.9496585	199.8664966	246.456343	22-2_par	-0.814285714	-0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.317	19	0	0	NA	11qB5	chr11-69590981-82929860	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	2	1	sgMsh2	cell line
chr11	120137905	120137905	C	G	ENSMUST00000103018.10	1	ENSMUSG00000061306	missense	G/A	193	Slc38a10	ENSMUST00000103018.10:c.578G>C	ENSMUSP00000099307.4:p.Gly193Ala	H-2-Kb	8	11	1	AVFRCVPI	GVFRCVPI	NetMHCpan	99.5	805.7	8.097	95	0.084	250.425	1135.185	4.533	2373.7	281.7	805.7	99.5	1464.670721	344.9371732	667.9439184	219.1492557	22-2_par	1.728571429	1.728571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.089	95	0	0	NA	11qE2	chr11-116740144-121956668	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.400083014	sgMsh2	cell line
chr11	87129739	87129739	T	C	ENSMUST00000139532.1	5	ENSMUSG00000018548	missense	V/A	14	Trim37	ENSMUST00000139532.1:c.41T>C	ENSMUSP00000119269.1:p.Val14Ala	H-2-Kb	8	11	1	ASFVWRNC	VSFVWRNC	SMMPMBEC	145.124	42.339	0.292	143	0.07	203.297	46.569	0.229	50.8	346.37	68	248.2	42.04748265	158.3944645	42.33894187	145.1242539	22-2_par	-0.028571429	-0.028571429	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.084	143	0	0	NA	11qC	chr11-83185009-116740143	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.37760644	sgMsh2	cell line
chr10	129238478	129238478	T	C	ENSMUST00000203248.2	3	ENSMUSG00000096229	missense	F/L	110	Olfr774	ENSMUST00000203248.2:c.328T>C	ENSMUSP00000145042.1:p.Phe110Leu	H-2-Kb	8	4	8	ISMGVSEL	ISMGVSEF	NetMHCpan	297.7	1622.2	5.449	205	0.171	414.267	4955.557	11.962	4617.65	407.09	1622.2	297.7	8067.519058	496.2951144	5293.464441	421.444121	22-2_par	0.628571429	0.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.17	205	0	0	NA	10qD3	chr10-82619830-129526639	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.76420351	sgMsh2	cell line
chr10	128581806	128581806	T	A	ENSMUST00000082059.6	1	ENSMUSG00000018166	missense	K/M	356	Erbb3	ENSMUST00000082059.6:c.1067A>T	ENSMUSP00000080716.6:p.Lys356Met	H-2-Kb	8	9	3	CTMILGNL	CTKILGNL	NetMHCpan	195.4	2235.5	11.441	193	0.067	373.194	1838.376	4.926	6606	438.29	2235.5	195.4	1196.024291	362.0261985	1441.252256	384.3616066	22-2_par	1.342857143	1.342857143	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe	3	0.075	193	0	0	NA	10qD3	chr10-82619830-129526639	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.337148607	sgMsh2	cell line
chr10	128308072	128308072	C	T	ENSMUST00000005825.7	1	ENSMUSG00000005682	missense	A/V	97	Pan2	ENSMUST00000005825.7:c.290C>T	ENSMUSP00000005825.6:p.Ala97Val	H-2-Kb	8	11	1	VTSFFGPA	ATSFFGPA	NetMHCpan	335.2	1007.7	3.006	49	0.082	477.282	1722.541	3.609	2774.71	607.2	1007.7	335.2	1921.940772	510.1994663	1523.140619	444.3651588	22-2_par	0.557142857	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.108	49	0	0	NA	10qD3	chr10-82619830-129526639	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.485493995	sgMsh2	cell line
chr11	120137905	120137905	C	G	ENSMUST00000103018.10	1	ENSMUSG00000061306	missense	G/A	193	Slc38a10	ENSMUST00000103018.10:c.578G>C	ENSMUSP00000099307.4:p.Gly193Ala	H-2-Kb	9	4	8	VSYIRWEAV	VSYIRWEGV	NetMHC	14.94	13.01	0.871	95	0.084	22.315	23.454	1.051	13.01	14.94	20.1	17.7	31.92346324	34.602701	26.80711022	26.93084622	22-2_par	0.042857143	0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.089	95	0	0	NA	11qE2	chr11-116740144-121956668	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.400083014	sgMsh2	cell line
chr11	77473077	77473077	C	T	ENSMUST00000092892.9	5	ENSMUSG00000037907	missense	A/T	398	Ankrd13b	ENSMUST00000092892.9:c.1192G>A	ENSMUSP00000090568.3:p.Ala398Thr	H-2-Kb	9	8	4	VSNTLFAKL	VSNALFAKL	NetMHC	19.2	20.36	1.06	32	0.5	68.713	80.451	1.171	20.36	19.2	29	26.7	181.1798935	161.8489924	131.9015807	110.7260991	22-2_par	0.585714286	1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.458	32	0	0	NA	11qB5	chr11-69590981-82929860	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	2	1	sgMsh2	cell line
chr11	49134558	49134558	A	G	ENSMUST00000179282.7	5	ENSMUSG00000040328	missense	D/G	90	Olfr56	ENSMUST00000179282.7:c.269A>G	ENSMUSP00000136647.1:p.Asp90Gly	H-2-Kb	9	8	4	MAYGRYVAI	MAYDRYVAI	NetMHCpan	15.9	14.4	0.906	104	0.192	31.499	30.259	0.961	27.08	30.99	14.4	15.9	39.27443988	36.82222268	33.43874735	32.00737072	22-2_par	0.428571429	0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.186	104	0	0	NA	11qB1.2	chr11-3355458-69578588	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.836128546	sgMsh2	cell line
chr11	49645899	49645899	A	G	ENSMUST00000020617.2	1	ENSMUSG00000020357	missense	N/S	1232	Flt4	ENSMUST00000020617.2:c.3695A>G	ENSMUSP00000020617.2:p.Asn1232Ser	H-2-Kb	9	5	7	LAARYYSCV	LAARYYNCV	NetMHC	155.2	321.1	2.069	41	0.073	219.589	316.534	1.441	321.1	155.2	430.3	193	311.967965	272.3391013	296.6538575	246.1784313	22-2_par	0.085714286	0.085714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.125	41	0	0	NA	11qB1.2	chr11-3355458-69578588	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.561914346	sgMsh2	cell line
chr10	107004793	107004793	T	G	ENSMUST00000165067.8	5	ENSMUSG00000035948	missense	D/A	369	Acss3	ENSMUST00000165067.8:c.1106A>C	ENSMUSP00000128209.1:p.Asp369Ala	H-2-Kb	9	11	1	AAGAYFRVL	DAGAYFRVL	NetMHCpan	184.7	2674.1	14.478	75	0.16	289.843	1956.805	6.751	2675.65	232.75	2674.1	184.7	1186.069123	420.8332054	1239.5099	346.9365057	22-2_par	0.914285714	0.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.167	75	0	0	NA	10qD1	chr10-82619830-129526639	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.750717566	sgMsh2	cell line
chr10	128308072	128308072	C	T	ENSMUST00000005825.7	1	ENSMUSG00000005682	missense	A/V	97	Pan2	ENSMUST00000005825.7:c.290C>T	ENSMUSP00000005825.6:p.Ala97Val	H-2-Kb	9	11	1	VTSFFGPAL	ATSFFGPAL	NetMHCpan	107.2	339	3.162	49	0.082	379.598	1166.596	3.073	1017.21	282.49	339	107.2	1517.434661	510.6343193	1315.982154	476.7053215	22-2_par	1.2	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.108	49	0	0	NA	10qD3	chr10-82619830-129526639	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.485493995	sgMsh2	cell line
chr11	73453972	73453972	T	C	ENSMUST00000121209.2	3	ENSMUSG00000072709	missense	K/R	80	Olfr380	ENSMUST00000121209.2:c.239A>G	ENSMUSP00000112462.1:p.Lys80Arg	H-2-Kb	9	8	4	TMPRLLQNM	TMPKLLQNM	NetMHC	296.37	490.1	1.654	563	0.085	466.493	523.009	1.121	490.1	296.37	493.8	346.7	552.2172896	586.2866429	671.8154697	721.5227015	22-2_par	-0.514285714	-0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.083	563	0	0	NA	11qB4	chr11-69590981-82929860	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.373111125	sgMsh2	cell line
chr10	88809729	88809729	C	A	ENSMUST00000004470.8	5	ENSMUSG00000004356	missense	G/V	554	Utp20	ENSMUST00000004470.8:c.1661G>T	ENSMUSP00000004470.7:p.Gly554Val	H-2-Kb	9	11	1	VSFGKGHLF	GSFGKGHLF	SMM	181.598	986.529	5.433	161	0.081	192.678	2080.015	10.795	3817.27	318.38	3173.5	194.7	986.5293264	181.5975563	955.5424822	190.6557905	22-2_par	0.214285714	0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.1	161	0	0	NA	10qC1	chr10-82619830-129526639	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.449531476	sgMsh2	cell line
chr13	25102535	25102535	G	A	ENSMUST00000069614.6	1	ENSMUSG00000035910	missense	G/E	147	Dcdc2a	ENSMUST00000069614.6:c.440G>A	ENSMUSP00000063650.6:p.Gly147Glu	H-2-Db	9	6	6	FLIANEDLI	FLIANGDLI	NetMHC	29.1	27.72	0.953	110	0.064	61.575	53.81	0.874	27.72	29.1	47.7	67.1	71.88197482	70.24574131	59.91975101	56.04927508	22-2_par	0.585714286	0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.075	110	0	0	NA	13qA3.1	chr13-23782291-119495179	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.337148607	sgMsh2	cell line
chr12	90332327	90332327	G	T	ENSMUST00000163134.7	5	ENSMUSG00000066392	missense	G/C	1545	Nrxn3	ENSMUST00000163134.7:c.4633G>T	ENSMUSP00000129678.1:p.Gly1545Cys	H-2-Db	9	6	6	SAQSNCTLM	SAQSNGTLM	NetMHC	38.67	19.7	0.509	36	0.083	48.074	42.705	0.888	19.7	38.67	36.7	72.4	48.71020979	42.62064325	60.19632801	53.52664216	22-2_par	-0.042857143	-0.042857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.094	36	0	0	NA	12qD3	chr12-3501831-119465464	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.422559588	sgMsh2	cell line
chr13	21142853	21142853	A	T	ENSMUST00000216039.2	3	ENSMUSG00000045474	missense	F/Y	68	Olfr1368	ENSMUST00000216039.2:c.203T>A	ENSMUSP00000149549.1:p.Phe68Tyr	H-2-Db	9	4	8	FFLSNLSYV	FFLSNLSFV	SMM	55.798	80.282	1.439	124	0.056	77.094	114.023	1.479	99.94	65.56	502	368.5	80.28233585	55.79817569	128.1061561	88.62780633	22-2_par	0.771428571	1.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.064	124	0	0	NA	13qA2	chr13-12791714-23488184	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.287700145	sgMsh2	cell line
chr14	69796369	69796369	T	G	ENSMUST00000022665.3	1	ENSMUSG00000022075	missense	N/T	469	Rhobtb2	ENSMUST00000022665.3:c.1406A>C	ENSMUSP00000022665.2:p.Asn469Thr	H-2-Db	9	8	4	NILTNEAFM	NILNNEAFM	NetMHC	164.59	518.8	3.152	130	0.031	300.335	461.488	1.537	518.8	164.59	833.3	412.5	355.3202835	302.4266091	404.1755147	298.242822	22-2_par	0.371428571	0.742857143	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Vardict	2	0.049	130	0	0	NA	14qD2	chr14-53336808-123291781	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.220270423	sgMsh2	cell line
chr13	21133629	21133629	C	T	ENSMUST00000215804.1	5	ENSMUSG00000071522	missense	L/F	285	Olfr263	ENSMUST00000215804.1:c.853C>T	ENSMUSP00000149892.1:p.Leu285Phe	H-2-Kb	8	7	5	ITPSFNPL	ITPSLNPL	NetMHC	4.66	92.03	19.749	163	0.031	13.437	146.89	10.931	92.03	4.66	202.2	14	135.7500506	12.87478543	158.0301673	14.81630809	22-2_par	-0.228571429	-0.128571429	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Vardict	2	0.041	163	0	0	NA	13qA2	chr13-12791714-23488184	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.184307905	sgMsh2	cell line
chr13	21142853	21142853	A	T	ENSMUST00000216039.2	3	ENSMUSG00000045474	missense	F/Y	68	Olfr1368	ENSMUST00000216039.2:c.203T>A	ENSMUSP00000149549.1:p.Phe68Tyr	H-2-Kb	8	7	5	SNLSYVDL	SNLSFVDL	NetMHC	22.83	17.83	0.781	124	0.056	51.869	40.501	0.781	17.83	22.83	31.6	43.1	49.40148455	60.63732022	58.30959165	71.57148034	22-2_par	0.385714286	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.064	124	0	0	NA	13qA2	chr13-12791714-23488184	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.287700145	sgMsh2	cell line
chr14	56117736	56117736	T	G	ENSMUST00000089549.7	1	ENSMUSG00000022156	missense	K/T	246	Gzme	ENSMUST00000089549.7:c.737A>C	ENSMUSP00000086978.6:p.Lys246Thr	H-2-Kb	8	14	6	ISRNMTLL	ISRNMKLL	NetMHC	91.44	398.35	4.356	247	0.101	135.993	331.521	2.438	398.35	91.44	937.2	214.1	253.9451951	127.8615603	264.691503	144.1252256	22-2_par	-1.27E-16	0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.101	247	0	0	NA	14qC3	chr14-53336808-123291781	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.454026791	sgMsh2	cell line
chr13	98267388	98267388	A	G	ENSMUST00000022164.15	1	ENSMUSG00000021661	missense	K/R	120	Ankra2	ENSMUST00000022164.15:c.359A>G	ENSMUSP00000022164.8:p.Lys120Arg	H-2-Kb	8	9	3	TTRHFSPI	TTKHFSPI	NetMHC	93.02	659.59	7.091	207	0.043	128.58	372.847	2.9	659.59	93.02	294.3	143.9	438.2682402	137.0061303	307.4255792	120.1544888	22-2_par	-0.5	-0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.048	207	0	0	NA	13qD1	chr13-23782291-119495179	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.215775109	sgMsh2	cell line
chr12	51400069	51400069	A	C	ENSMUST00000021335.6	1	ENSMUSG00000020952	missense	T/P	273	Scfd1	ENSMUST00000021335.6:c.817A>C	ENSMUSP00000021335.5:p.Thr273Pro	H-2-Kb	8	8	4	HTWPYQAL	HTWTYQAL	NetMHCpan	86.2	62.5	0.725	190	0.026	121.389	62.925	0.518	47.06	115.21	62.5	86.2	77.75709016	130.5389154	63.34903447	127.5674869	22-2_par	-0.342857143	-0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.034	190	0	0	NA	12qB3	chr12-3501831-119465464	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.152840702	sgMsh2	cell line
chr14	61189622	61189622	A	T	ENSMUST00000089394.9	1	ENSMUSG00000048279	missense	N/Y	160	Sacs	ENSMUST00000089394.9:c.478A>T	ENSMUSP00000086816.3:p.Asn160Tyr	H-2-Kb	8	6	6	ALYVYYNA	ALYVYNNA	NetMHC	131.45	206.23	1.569	107	0.047	153.493	253.309	1.65	206.23	131.45	385.2	257.7	284.9311953	172.480499	221.6868845	134.5054866	22-2_par	0.342857143	0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.064	107	0	0	NA	14qD1	chr14-53336808-123291781	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.287700145	sgMsh2	cell line
chr12	87118005	87118005	C	T	ENSMUST00000037788.5	1	ENSMUSG00000034126	missense	R/Q	543	Pomt2	ENSMUST00000037788.5:c.1628G>A	ENSMUSP00000035260.4:p.Arg543Gln	H-2-Kb	8	10	2	SQIRLIHL	SRIRLIHL	NetMHC	167.39	1387.76	8.291	83	0.108	261.956	1175.506	4.487	1387.76	167.39	1884.7	208.6	963.2521787	316.7670499	941.3258822	315.3116375	22-2_par	0.771428571	0.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.115	83	0	0	NA	12qD2	chr12-3501831-119465464	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.516961198	sgMsh2	cell line
chr13	59517688	59517688	A	G	ENSMUST00000022040.13	1	ENSMUSG00000021557	missense	V/A	222	Agtpbp1	ENSMUST00000022040.13:c.665T>C	ENSMUSP00000022040.6:p.Val222Ala	H-2-Kb	8	6	6	SGLMKAAL	SGLMKVAL	NetMHC	200.87	731.9	3.644	88	0.08	361.917	920.268	2.543	731.9	200.87	879.5	492.3	1129.11974	390.6069803	961.0367602	333.2268594	22-2_par	1.257142857	1.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.086	88	0	0	NA	13qB2	chr13-23782291-119495179	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.38659707	sgMsh2	cell line
chr12	73545723	73545723	A	T	ENSMUST00000042975.6	NA	ENSMUSG00000034435	missense	F/Y	206	Tmem30b	ENSMUST00000042975.6:c.617T>A	ENSMUSP00000037476.5:p.Phe206Tyr	H-2-Kb	8	9	3	VKYRNPPL	VKFRNPPL	SMM	80.861	109.079	1.349	22	0.136	179.476	312.229	1.74	515.38	273.3	602.2	436.6	109.0787117	80.8611661	109.0787117	85.65249141	22-2_par	-1.8	-1.742857143	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Vardict	2	0.175	22	0	0	NA	12qC3	chr12-3501831-119465464	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.786680084	sgMsh2	cell line
chr12	40725790	40725790	A	C	ENSMUST00000037488.7	1	ENSMUSG00000035954	missense	K/N	577	Dock4	ENSMUST00000037488.7:c.1731A>C	ENSMUSP00000047387.6:p.Lys577Asn	H-2-Kb	8	5	7	SFLCSTNL	SFLCSTKL	SMM	240.846	969.929	4.027	110	0.055	408.115	1213	2.972	1322.8	437.93	1103.2	421.1	969.9291239	240.8463117	1373.219621	395.1299959	22-2_par	1.128571429	1.128571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.079	110	0	0	NA	12qB1	chr12-3501831-119465464	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.355129866	sgMsh2	cell line
chr12	108866101	108866101	G	A	ENSMUST00000161154.1	1	ENSMUSG00000021266	missense	A/V	346	Wars	ENSMUST00000161154.1:c.1037C>T	ENSMUSP00000124625.1:p.Ala346Val	H-2-Kb	8	5	7	HSTFFPVL	HSTFFPAL	NetMHCpan	236.2	105.4	0.446	77	0.091	378.316	155.506	0.411	154.07	1060.36	105.4	236.2	156.9422953	369.6068402	172.0838049	387.0258739	22-2_par	1.5	1.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.1	77	0	0	NA	12qF1	chr12-3501831-119465464	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.449531476	sgMsh2	cell line
chr14	61189622	61189622	A	T	ENSMUST00000089394.9	1	ENSMUSG00000048279	missense	N/Y	160	Sacs	ENSMUST00000089394.9:c.478A>T	ENSMUSP00000086816.3:p.Asn160Tyr	H-2-Kb	9	6	6	ALYVYYNAV	ALYVYNNAV	NetMHC	16.14	358.56	22.216	107	0.047	59.146	468.494	7.921	358.56	16.14	346.6	36.8	602.7122243	81.4910662	578.428922	87.95286685	22-2_par	0.4	0.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.064	107	0	0	NA	14qD1	chr14-53336808-123291781	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.287700145	sgMsh2	cell line
chr12	40725790	40725790	A	C	ENSMUST00000037488.7	1	ENSMUSG00000035954	missense	K/N	577	Dock4	ENSMUST00000037488.7:c.1731A>C	ENSMUSP00000047387.6:p.Lys577Asn	H-2-Kb	9	4	8	TSFLCSTNL	TSFLCSTKL	NetMHCpan	27.1	69.7	2.572	110	0.055	79.345	134.371	1.694	99.99	28.04	69.7	27.1	197.7470439	130.6501763	168.7524163	142.3147781	22-2_par	1.128571429	1.128571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.079	110	0	0	NA	12qB1	chr12-3501831-119465464	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.355129866	sgMsh2	cell line
chr13	98267388	98267388	A	G	ENSMUST00000022164.15	1	ENSMUSG00000021661	missense	K/R	120	Ankra2	ENSMUST00000022164.15:c.359A>G	ENSMUSP00000022164.8:p.Lys120Arg	H-2-Kb	9	8	4	STTRHFSPI	STTKHFSPI	NetMHC	37.58	73.01	1.943	207	0.043	189.116	195.285	1.033	73.01	37.58	131.6	100.1	262.4883301	278.6826939	258.9703239	278.131386	22-2_par	-0.5	-0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.048	207	0	0	NA	13qD1	chr13-23782291-119495179	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.215775109	sgMsh2	cell line
chr13	27098617	27098617	T	C	ENSMUST00000225330.1	NA	ENSMUSG00000057170	missense	W/R	114	Prl3d1	ENSMUST00000225330.1:c.340T>C	ENSMUSP00000152890.1:p.Trp114Arg	H-2-Kb	9	7	5	VSISRKEPL	VSISWKEPL	NetMHC	82.99	30.69	0.37	186	0.07	91.099	94.235	1.034	30.69	82.99	80.3	175.5	108.1707896	87.5205423	128.3068964	94.67820161	22-2_par	-0.857142857	-0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.077	186	0	0	NA	13qA3.1	chr13-23782291-119495179	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.346139237	sgMsh2	cell line
chr13	21133629	21133629	C	T	ENSMUST00000215804.1	5	ENSMUSG00000071522	missense	L/F	285	Olfr263	ENSMUST00000215804.1:c.853C>T	ENSMUSP00000149892.1:p.Leu285Phe	H-2-Kb	9	6	6	IITPSFNPL	IITPSLNPL	NetMHC	102.66	1087.64	10.595	163	0.031	231	888.444	3.846	1087.64	102.66	901.4	143.5	708.1251187	318.5004131	875.4876014	373.4650797	22-2_par	-0.228571429	0.742857143	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Vardict	2	0.041	163	0	0	NA	13qA2	chr13-12791714-23488184	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.184307905	sgMsh2	cell line
chr13	21133629	21133629	C	T	ENSMUST00000215804.1	5	ENSMUSG00000071522	missense	L/F	285	Olfr263	ENSMUST00000215804.1:c.853C>T	ENSMUSP00000149892.1:p.Leu285Phe	H-2-Kb	9	7	5	ITPSFNPLI	ITPSLNPLI	NetMHCpan	187.1	1631.1	8.718	163	0.031	352.819	2025.604	5.741	2588.12	189.09	1631.1	187.1	1897.186388	516.547186	2154.021332	661.0738832	22-2_par	0.514285714	0.514285714	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Vardict	2	0.041	163	0	0	NA	13qA2	chr13-12791714-23488184	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.184307905	sgMsh2	cell line
chr15	96419902	96419902	T	C	ENSMUST00000047835.7	5	ENSMUSG00000033228	missense	T/A	594	Scaf11	ENSMUST00000047835.7:c.1780A>G	ENSMUSP00000044898.6:p.Thr594Ala	H-2-Db	9	10	2	SADLNDSAV	STDLNDSAV	SMMPMBEC	325.514	1860.244	5.715	171	0.082	417.773	2621.424	6.275	10686.27	1180.33	2964.5	485.1	2278.347686	350.4451065	1860.244375	325.514246	22-2_par	-0.214285714	-0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.091	171	0	0	NA	15qF1	chr15-94279701-102454328	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.409073644	sgMsh2	cell line
chr15	33213111	33213111	A	G	ENSMUST00000042167.9	1	ENSMUSG00000039007	missense	N/S	92	Cpq	ENSMUST00000042167.9:c.275A>G	ENSMUSP00000039046.9:p.Asn92Ser	H-2-Kb	8	5	7	IQIMYQSL	IQIMYQNL	NetMHC	10.59	5.1	0.482	75	0.053	32.424	15.611	0.481	5.1	10.59	11.6	20	20.88045702	51.25544401	19.6218522	44.8476819	22-2_par	0.157142857	0.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.064	75	0	0	NA	15qB3.1	chr15-3279130-63831123	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.287700145	sgMsh2	cell line
chr16	19530606	19530606	T	C	ENSMUST00000213480.1	5	ENSMUSG00000061361	missense	T/A	105	Olfr168	ENSMUST00000213480.1:c.313A>G	ENSMUSP00000149405.1:p.Thr105Ala	H-2-Kb	8	5	7	QSFFFLAM	QSFFFLTM	NetMHCpan	11.2	10.8	0.964	120	0.3	25.111	40.439	1.61	33.7	21.86	10.8	11.2	47.17805149	28.36220554	66.64076901	42.33894187	22-2_par	2.157142857	2.157142857	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.305	120	0	0	NA	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	1	sgMsh2	cell line
chr17	30959281	30959281	G	T	ENSMUST00000114555.2	5	ENSMUSG00000054134	missense	R/L	77	Umodl1	ENSMUST00000114555.2:c.230G>T	ENSMUSP00000110202.1:p.Arg77Leu	H-2-Kb	8	8	4	TVYLTQYL	TVYRTQYL	NetMHCpan	40.8	37.9	0.929	82	0.268	87.306	72.248	0.828	30.12	43.47	37.9	40.8	113.433152	138.2738324	106.5957771	131.1414557	22-2_par	0.714285714	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.265	82	0	0	NA	17qA3.3	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	1	sgMsh2	cell line
chr15	99101605	99101605	T	C	ENSMUST00000061295.6	1	ENSMUSG00000038009	missense	F/L	224	Dnajc22	ENSMUST00000061295.6:c.670T>C	ENSMUSP00000055482.6:p.Phe224Leu	H-2-Kb	8	7	5	SWFSLFPL	SWFSFFPL	NetMHC	48.38	7.11	0.147	56	0.161	56.299	6.491	0.115	7.11	48.38	16.6	52.1	5.871377443	61.9070344	5.67204934	60.49785825	22-2_par	1.414285714	1.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.149	56	0	0	NA	15qF1	chr15-94279701-102454328	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.6698019	sgMsh2	cell line
chr15	99101605	99101605	T	C	ENSMUST00000061295.6	1	ENSMUSG00000038009	missense	F/L	224	Dnajc22	ENSMUST00000061295.6:c.670T>C	ENSMUSP00000055482.6:p.Phe224Leu	H-2-Kb	8	4	8	SFLSWFSL	SFLSWFSF	NetMHC	73.52	493.81	6.717	56	0.161	113.976	1192.321	10.461	493.81	73.52	926.7	131.7	1818.61178	111.8767908	1457.94117	116.0753495	22-2_par	1.528571429	1.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.149	56	0	0	NA	15qF1	chr15-94279701-102454328	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.6698019	sgMsh2	cell line
chr15	89376624	89376624	T	C	ENSMUST00000023285.4	1	ENSMUSG00000022615	missense	N/S	42	Tymp	ENSMUST00000023285.4:c.125A>G	ENSMUSP00000023285.4:p.Asn42Ser	H-2-Kb	8	10	2	RSFVHAVI	RNFVHAVI	NetMHCpan	49.1	59.7	1.216	124	0.105	80.354	161.945	2.015	212.06	81.14	59.7	49.1	158.0301673	85.45549615	165.8593656	79.56828547	22-2_par	1.928571429	1.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.132	124	0	0	NA	15qE3	chr15-63833026-90569821	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.593381549	sgMsh2	cell line
chr17	27025456	27025456	GA	G	ENSMUST00000122106.8	5	ENSMUSG00000048731	FS	E/X	54	Ggnbp1	ENSMUST00000122106.8:c.163del	ENSMUSP00000113880.1:p.Arg55GlyfsTer151	H-2-Kb	8	118	0	SGVPLAPL	NA	NetMHC	86.08	NA	NA	112	0.223	184.021	NA	NA	NA	86.08	NA	182.8	NA	185.2422298	NA	205.9396641	22-2_par	1.428571429	1.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.232	112	0	0	NA	17qA3.3	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	1	sgMsh2	cell line
chr16	23114140	23114140	T	C	ENSMUST00000115338.7	1	ENSMUSG00000022881	missense	Y/C	349	Rfc4	ENSMUST00000115338.7:c.1046A>G	ENSMUSP00000110995.1:p.Tyr349Cys	H-2-Kb	8	6	6	TNFFWCVL	TNFFWYVL	NetMHCpan	26.2	17.4	0.664	95	0.158	66.258	46.637	0.704	44.55	164.35	17.4	26.2	48.72367077	66.18201718	51.25544401	66.33458249	22-2_par	1.671428571	1.671428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.164	95	0	0	NA	16qB1	chr16-4630421-97886207	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.737231621	sgMsh2	cell line
chr15	81407634	81407634	C	A	ENSMUST00000057236.4	NA	ENSMUSG00000047108	missense	E/D	167	Dnajb7	ENSMUST00000057236.4:c.501G>T	ENSMUSP00000100712.2:p.Glu167Asp	H-2-Kb	8	6	6	VSLGHDGL	VSLGHEGL	SMM	128.156	129.342	1.009	64	0.156	271.565	170.353	0.627	185.56	370.65	222.7	587.2	129.3421274	128.1563117	155.1457917	172.480499	22-2_par	-0.1	-0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.136	64	0	0	NA	15qE1	chr15-63833026-90569821	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.611362808	sgMsh2	cell line
chr16	45186233	45186233	A	G	ENSMUST00000023343.3	1	ENSMUSG00000022663	missense	M/V	288	Atg3	ENSMUST00000023343.3:c.862A>G	ENSMUSP00000023343.3:p.Met288Val	H-2-Kb	8	10	2	HVYLLIFL	HMYLLIFL	SMMPMBEC	185.242	227.898	1.23	138	0.051	353.188	319.523	0.905	395.41	495.64	563	632.2	243.6351806	210.7366151	227.8977303	185.2422298	22-2_par	3.085714286	3.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.062	138	0	0	NA	16qB5	chr16-4630421-97886207	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.278709515	sgMsh2	cell line
chr15	102322934	102322934	T	G	ENSMUST00000064924.5	1	ENSMUSG00000058290	missense	S/A	1916	Espl1	ENSMUST00000064924.5:c.5746T>G	ENSMUSP00000064465.4:p.Ser1916Ala	H-2-Kb	8	8	4	RLPAFRFL	RLPSFRFL	SMM	264.692	279.087	1.054	46	0.109	291.905	289.757	0.993	520.44	614.08	253.1	278.5	279.0872523	264.691503	300.4277187	305.3092764	22-2_par	1.271428571	1.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.117	46	0	0	NA	15qF3	chr15-94279701-102454328	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.525951827	sgMsh2	cell line
chr15	99101605	99101605	T	C	ENSMUST00000061295.6	1	ENSMUSG00000038009	missense	F/L	224	Dnajc22	ENSMUST00000061295.6:c.670T>C	ENSMUSP00000055482.6:p.Phe224Leu	H-2-Kb	9	7	5	SWFSLFPLL	SWFSFFPLL	SMM	16.948	4.614	0.272	56	0.161	27.815	9.905	0.356	11.31	33.83	8.5	21.8	4.614344339	16.94767004	11.64796347	37.95333991	22-2_par	2.085714286	2.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.149	56	0	0	NA	15qF1	chr15-94279701-102454328	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.6698019	sgMsh2	cell line
chr17	3521753	3521753	T	C	ENSMUST00000041003.7	1	ENSMUSG00000036983	missense	H/R	229	Tfb1m	ENSMUST00000041003.7:c.686A>G	ENSMUSP00000035291.6:p.His229Arg	H-2-Kb	9	7	5	VGVVRLTPL	VGVVHLTPL	NetMHC	37.91	30.22	0.797	107	0.187	75.519	75.377	0.998	30.22	37.91	29.1	39.8	120.5341196	116.4420922	122.2503187	111.2371876	22-2_par	1.314285714	1.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.183	107	0	0	NA	17qA1	chr17-3079405-6442865	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.822642602	sgMsh2	cell line
chr17	23360046	23360046	G	A	ENSMUST00000168175.2	1	ENSMUSG00000091076	missense	C/Y	831	Vmn2r115	ENSMUST00000168175.2:c.2492G>A	ENSMUSP00000131447.1:p.Cys831Tyr	H-2-Kb	9	7	5	FVPKYYTIL	FVPKCYTIL	NetMHC	55.93	428.87	7.668	508	0.045	98.87	489.736	4.953	428.87	55.93	615.4	60.3	460.3731641	137.4390042	519.0987702	161.1573064	22-2_par	-0.071428571	-0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.048	508	0	0	NA	17qA3.3	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.215775109	sgMsh2	cell line
chr15	33213111	33213111	A	G	ENSMUST00000042167.9	1	ENSMUSG00000039007	missense	N/S	92	Cpq	ENSMUST00000042167.9:c.275A>G	ENSMUSP00000039046.9:p.Asn92Ser	H-2-Kb	9	4	8	AIQIMYQSL	AIQIMYQNL	NetMHC	83.23	24.19	0.291	75	0.053	290.132	209.49	0.722	24.19	83.23	112	222.9	306.9799422	357.3633412	323.779986	364.1245828	22-2_par	0.157142857	0.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.064	75	0	0	NA	15qB3.1	chr15-3279130-63831123	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.287700145	sgMsh2	cell line
chr16	19530606	19530606	T	C	ENSMUST00000213480.1	5	ENSMUSG00000061361	missense	T/A	105	Olfr168	ENSMUST00000213480.1:c.313A>G	ENSMUSP00000149405.1:p.Thr105Ala	H-2-Kb	9	5	7	QSFFFLAMA	QSFFFLTMA	NetMHC	93.32	208.76	2.237	120	0.3	184.695	254.114	1.376	208.76	93.32	232.1	162.8	276.1277156	206.5903351	323.779986	237.82089	22-2_par	2.528571429	2.528571429	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.305	120	0	0	NA	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	1	sgMsh2	cell line
chr15	99101605	99101605	T	C	ENSMUST00000061295.6	1	ENSMUSG00000038009	missense	F/L	224	Dnajc22	ENSMUST00000061295.6:c.670T>C	ENSMUSP00000055482.6:p.Phe224Leu	H-2-Kb	9	4	8	SFLSWFSLF	SFLSWFSFF	SMM	90.596	166.001	1.832	56	0.161	135.839	228.765	1.684	195.56	114.19	314.8	200.2	166.0007308	90.59620379	261.9690589	157.4889183	22-2_par	1.528571429	1.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.149	56	0	0	NA	15qF1	chr15-94279701-102454328	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.6698019	sgMsh2	cell line
chr14	120923547	120923547	T	C	ENSMUST00000032898.8	1	ENSMUSG00000030662	missense	F/L	211	Ipo5	ENSMUST00000032898.8:c.631T>C	ENSMUSP00000032898.7:p.Phe211Leu	H-2-Kb	9	9	3	ALLKHFADL	ALFKHFADL	NetMHC	134.95	39.07	0.29	144	0.076	267.674	85.638	0.32	39.07	134.95	29.8	168.7	209.4642929	587.6381732	132.2056452	366.6485738	22-2_par	0.228571429	0.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.074	144	0	0	NA	14qE5	chr14-53336808-123291781	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.332653293	sgMsh2	cell line
chr16	23114140	23114140	T	C	ENSMUST00000115338.7	1	ENSMUSG00000022881	missense	Y/C	349	Rfc4	ENSMUST00000115338.7:c.1046A>G	ENSMUSP00000110995.1:p.Tyr349Cys	H-2-Kb	9	6	6	TNFFWCVLV	TNFFWYVLV	SMMPMBEC	127.717	29.461	0.231	95	0.158	149.825	31.834	0.212	48.76	141.25	27.8	158.4	34.20660715	160.3651519	29.46117067	127.7173798	22-2_par	2.771428571	2.771428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.164	95	0	0	NA	16qB1	chr16-4630421-97886207	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.737231621	sgMsh2	cell line
chr16	85899342	85899342	T	C	ENSMUST00000023611.6	1	ENSMUSG00000022894	missense	N/S	309	Adamts5	ENSMUST00000023611.6:c.926A>G	ENSMUSP00000023611.5:p.Asn309Ser	H-2-Kb	9	7	5	ASIESHIRL	ASIENHIRL	NetMHC	186.03	123.89	0.666	66	0.061	330.761	288.937	0.874	123.89	186.03	189.5	201	461.4344339	535.9323836	388.3738676	460.5215948	22-2_par	0.114285714	0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.075	66	0	0	NA	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.337148607	sgMsh2	cell line
chr15	99101605	99101605	T	C	ENSMUST00000061295.6	1	ENSMUSG00000038009	missense	F/L	224	Dnajc22	ENSMUST00000061295.6:c.670T>C	ENSMUSP00000055482.6:p.Phe224Leu	H-2-Kb	9	6	6	LSWFSLFPL	LSWFSFFPL	NetMHCpan	166.6	39.5	0.237	56	0.161	198.312	70.569	0.356	51.55	186.61	39.5	166.6	99.56575699	221.3655323	89.58803273	210.0148478	22-2_par	1.414285714	1.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.149	56	0	0	NA	15qF1	chr15-94279701-102454328	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.6698019	sgMsh2	cell line
chr15	99101605	99101605	T	C	ENSMUST00000061295.6	1	ENSMUSG00000038009	missense	F/L	224	Dnajc22	ENSMUST00000061295.6:c.670T>C	ENSMUSP00000055482.6:p.Phe224Leu	H-2-Kb	9	10	2	SLFPLLGRL	SFFPLLGRL	NetMHCpan	77	81.6	1.06	56	0.161	354.655	158.489	0.447	104.11	205.52	81.6	77	212.8678139	553.4902819	236.1837425	503.7905305	22-2_par	1.1	1.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.149	56	0	0	NA	15qF1	chr15-94279701-102454328	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.6698019	sgMsh2	cell line
chr15	99101605	99101605	T	C	ENSMUST00000061295.6	1	ENSMUSG00000038009	missense	F/L	224	Dnajc22	ENSMUST00000061295.6:c.670T>C	ENSMUSP00000055482.6:p.Phe224Leu	H-2-Kb	9	3	9	GSFLSWFSL	GSFLSWFSF	NetMHCpan	211.6	899.4	4.25	56	0.161	223.479	413.431	1.85	433.99	235.81	899.4	211.6	370.7746213	219.8416627	392.8710251	227.1171867	22-2_par	1.528571429	1.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.149	56	0	0	NA	15qF1	chr15-94279701-102454328	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.6698019	sgMsh2	cell line
chr17	23360046	23360046	G	A	ENSMUST00000168175.2	1	ENSMUSG00000091076	missense	C/Y	831	Vmn2r115	ENSMUST00000168175.2:c.2492G>A	ENSMUSP00000131447.1:p.Cys831Tyr	H-2-Kb	9	6	6	IFVPKYYTI	IFVPKCYTI	NetMHC	249.84	1056.86	4.23	508	0.045	418.095	1884.744	4.508	1056.86	249.84	2478	467.7	1919.154771	409.3643322	1850.33345	426.8251484	22-2_par	-0.014285714	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.048	508	0	0	NA	17qA3.3	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.215775109	sgMsh2	cell line
chr17	27886966	27886966	T	G	ENSMUST00000114849.2	1	ENSMUSG00000039512	missense	L/R	822	Uhrf1bp1	ENSMUST00000114849.2:c.2465T>G	ENSMUSP00000110499.1:p.Leu822Arg	H-2-Kb	9	9	3	VRRDHYQYL	VRLDHYQYL	SMM	120.534	88.33	0.733	51	0.059	206.931	92.607	0.448	81.48	269.9	389.5	1123	88.33035991	120.5341196	96.88354023	143.9627056	22-2_par	-1.928571429	-1.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.084	51	0	0	NA	17qA3.3	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.37760644	sgMsh2	cell line
chr15	76334796	76334796	C	T	ENSMUST00000023221.12	1	ENSMUSG00000022561	missense	L/F	613	Gpaa1	ENSMUST00000023221.12:c.1837C>T	ENSMUSP00000023221.6:p.Leu613Phe	H-2-Kb	9	10	4	CWLFFWNVL	CWLLFWNVL	SMM	67.938	63.257	0.931	38	0.184	199.598	181.906	0.911	230.69	272.65	1294.5	879.2	63.25720517	67.93756861	133.122051	126.5464598	22-2_par	1.857142857	1.857142857	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.206	38	0	0	NA	15qD3	chr15-63833026-90569821	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.926034841	sgMsh2	cell line
chr17	30959281	30959281	G	T	ENSMUST00000114555.2	5	ENSMUSG00000054134	missense	R/L	77	Umodl1	ENSMUST00000114555.2:c.230G>T	ENSMUSP00000110202.1:p.Arg77Leu	H-2-Kb	9	9	3	VYLTQYLAM	VYRTQYLAM	SMM	172.23	235.023	1.365	82	0.268	230.854	337.246	1.461	395.72	274.1	649.2	312.2	235.0228021	172.2304753	278.7725451	187.6074152	22-2_par	0.828571429	0.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.265	82	0	0	NA	17qA3.3	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	1	sgMsh2	cell line
chr17	18947680	18947680	A	G	ENSMUST00000168710.2	5	ENSMUSG00000091491	missense	E/G	732	Vmn2r97	ENSMUST00000168710.2:c.2195A>G	ENSMUSP00000129313.1:p.Glu732Gly	H-2-Kb	9	10	2	TGYGHIIIL	TEYGHIIIL	NetMHCpan	100	2456.9	24.569	656	0.047	195.387	1414.693	7.24	2698.96	318.21	2456.9	100	372.4860392	206.5903351	350.1466697	184.183194	22-2_par	1.771428571	1.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.051	656	0	0	NA	17qA3.2	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.229261053	sgMsh2	cell line
chr16	19530606	19530606	T	C	ENSMUST00000213480.1	5	ENSMUSG00000061361	missense	T/A	105	Olfr168	ENSMUST00000213480.1:c.313A>G	ENSMUSP00000149405.1:p.Thr105Ala	H-2-Kb	9	4	8	VQSFFFLAM	VQSFFFLTM	NetMHCpan	59.2	52.4	0.885	120	0.3	246.801	263.901	1.069	403.25	331.1	52.4	59.2	254.7475407	239.9440583	273.0549161	253.6588388	22-2_par	2.157142857	2.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.305	120	0	0	NA	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	1	sgMsh2	cell line
chr15	95435157	95435157	T	A	ENSMUST00000166170.8	5	ENSMUSG00000022454	missense	I/F	174	Nell2	ENSMUST00000166170.8:c.520A>T	ENSMUSP00000131665.1:p.Ile174Phe	H-2-Kb	9	10	2	KFYERVVEM	KIYERVVEM	NetMHCpan	267.6	114.7	0.429	171	0.029	279.054	209.268	0.75	216.83	335.59	114.7	267.6	211.4024421	277.4022632	207.1333361	280.704904	22-2_par	-0.357142857	-0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.043	171	0	0	NA	15qE3	chr15-94279701-102454328	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.193298535	sgMsh2	cell line
chr16	23114140	23114140	T	C	ENSMUST00000115338.7	1	ENSMUSG00000022881	missense	Y/C	349	Rfc4	ENSMUST00000115338.7:c.1046A>G	ENSMUSP00000110995.1:p.Tyr349Cys	H-2-Kb	9	5	7	TTNFFWCVL	TTNFFWYVL	NetMHCpan	185.1	162	0.875	95	0.158	321.161	295.565	0.92	423.34	584.84	162	185.1	323.6756285	367.3753391	267.4545558	274.9476424	22-2_par	1.671428571	1.671428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.164	95	0	0	NA	16qB1	chr16-4630421-97886207	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.737231621	sgMsh2	cell line
chr18	37146108	37146108	G	A	ENSMUST00000047479.2	1	ENSMUSG00000102697	missense	V/M	714	Pcdhac2	ENSMUST00000047479.2:c.2140G>A	ENSMUSP00000039888.1:p.Val714Met	H-2-Db	9	6	6	IALSTMSFI	IALSTVSFI	NetMHC	168.48	338.67	2.01	120	0.042	444.898	660.96	1.486	338.67	168.48	467.7	364.3	915.419164	559.2680377	854.2205204	525.4967083	22-2_par	1.528571429	1.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.052	120	0	0	NA	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.233756368	sgMsh2	cell line
chr18	37974113	37974113	A	T	ENSMUST00000042944.8	1	ENSMUSG00000024451	missense	S/T	1376	Arap3	ENSMUST00000042944.8:c.4126T>A	ENSMUSP00000035662.7:p.Ser1376Thr	H-2-Db	9	8	4	RTLTMFFPM	RTLSMFFPM	NetMHCpan	202.4	213.5	1.055	84	0.071	267.993	252.749	0.943	360.86	326.02	213.5	202.4	280.2980007	312.3345299	225.2008368	223.6505652	22-2_par	1.557142857	1.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.094	84	0	0	NA	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.422559588	sgMsh2	cell line
chr17	67632072	67632072	T	C	ENSMUST00000097290.3	NA	ENSMUSG00000073375	missense	N/S	171	Lrrc30	ENSMUST00000097290.3:c.512A>G	ENSMUSP00000094893.2:p.Asn171Ser	H-2-Kb	8	10	2	SSNYFAHI	SNNYFAHI	NetMHC	8.76	18.67	2.131	92	0.054	35.403	67.112	1.896	18.67	8.76	35.2	23.3	99.71029474	53.91877292	99.0238939	47.50507412	22-2_par	0.042857143	0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.084	92	0	0	NA	17qE1.1	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.37760644	sgMsh2	cell line
chr2	25091773	25091773	G	A	ENSMUST00000044018.7	1	ENSMUSG00000036805	missense	A/V	106	Noxa1	ENSMUST00000044018.7:c.317C>T	ENSMUSP00000037423.7:p.Ala106Val	H-2-Kb	8	11	1	VVIDYTQL	AVIDYTQL	NetMHC	9.26	39.62	4.279	177	0.045	21.421	72.498	3.384	39.62	9.26	36.1	12.1	125.8171954	33.39950266	105.3755853	30.74255792	22-2_par	0.5	0.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.055	177	0	0	NA	2qA3	chr2-23118144-36377967	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.247242312	sgMsh2	cell line
chr18	37146108	37146108	G	A	ENSMUST00000047479.2	1	ENSMUSG00000102697	missense	V/M	714	Pcdhac2	ENSMUST00000047479.2:c.2140G>A	ENSMUSP00000039888.1:p.Val714Met	H-2-Kb	8	9	3	STMSFIFL	STVSFIFL	NetMHC	11.99	20.89	1.742	120	0.042	19.373	33.506	1.73	20.89	11.99	32.2	13.7	34.81288376	26.96124854	38.34775994	25.04609364	22-2_par	2.042857143	2.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.052	120	0	0	NA	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.233756368	sgMsh2	cell line
chr17	74017771	74017771	A	G	ENSMUST00000043458.8	1	ENSMUSG00000038541	missense	F/L	234	Srd5a2	ENSMUST00000043458.8:c.700T>C	ENSMUSP00000048862.7:p.Phe234Leu	H-2-Kb	8	4	8	QAFYHHRL	QAFYHHRF	NetMHCpan	32	289.1	9.034	130	0.077	59.939	847.86	14.145	431.74	42.12	289.1	32	1263.979412	77.75709016	1414.946437	112.6522836	22-2_par	-0.542857143	-0.542857143	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.067	130	0	0	NA	17qE2	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.301186089	sgMsh2	cell line
chr17	83454455	83454455	T	A	ENSMUST00000096766.11	1	ENSMUSG00000032624	missense	L/H	526	Eml4	ENSMUST00000096766.11:c.1577T>A	ENSMUSP00000094528.4:p.Leu526His	H-2-Kb	8	7	5	SVFTHCQM	SVFTLCQM	NetMHCpan	43.2	76.4	1.769	169	0.047	83.949	180.446	2.149	126.07	52.09	76.4	43.2	256.8857419	115.8083836	234.8226582	116.8799454	22-2_par	0.571428571	0.571428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.056	169	0	0	NA	17qE4	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.251737627	sgMsh2	cell line
chr2	14219371	14219371	T	C	ENSMUST00000077517.8	1	ENSMUSG00000061531	missense	Y/H	324	Tmem236	ENSMUST00000077517.8:c.970T>C	ENSMUSP00000076722.7:p.Tyr324His	H-2-Kb	8	10	2	SHIYFNYV	SYIYFNYV	NetMHC	93.17	37.32	0.401	151	0.046	198.453	237.025	1.194	37.32	93.17	62.2	141.2	411.8508816	255.7054591	451.5855118	310.9853997	22-2_par	0.314285714	0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.056	151	0	0	NA	2qA2	chr2-3197272-23100032	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.251737627	sgMsh2	cell line
chr18	37519846	37519846	A	T	ENSMUST00000192409.1	NA	ENSMUSG00000073591	missense	M/L	456	Pcdhb22	ENSMUST00000192409.1:c.1366A>T	ENSMUSP00000141521.1:p.Met456Leu	H-2-Kb	8	5	7	TQVSYTLL	TQVSYTML	NetMHCpan	97.5	112.2	1.151	200	0.105	165.905	147.872	0.891	99.11	115.17	112.2	97.5	202.6469166	243.6351806	183.5439188	216.6406749	22-2_par	0.785714286	0.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.112	200	0	0	NA	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.503475254	sgMsh2	cell line
chr17	83781923	83781923	A	T	ENSMUST00000067826.14	1	ENSMUSG00000055817	missense	S/C	304	Mta3	ENSMUST00000067826.14:c.910A>T	ENSMUSP00000068931.8:p.Ser304Cys	H-2-Kb	8	11	1	CIIEYYYM	SIIEYYYM	NetMHCpan	116.5	24.3	0.209	314	0.035	156.936	42.679	0.272	14.88	137.78	24.3	116.5	61.05763804	176.0921516	78.83879904	266.5262568	22-2_par	0.5	0.585714286	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.037	314	0	0	NA	17qE4	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.166326646	sgMsh2	cell line
chr18	42235504	42235504	A	G	ENSMUST00000097590.4	1	ENSMUSG00000024493	missense	M/T	424	Lars	ENSMUST00000097590.4:c.1271T>C	ENSMUSP00000095197.3:p.Met424Thr	H-2-Kb	8	11	1	TVLPFEPV	MVLPFEPV	NetMHC	145.91	126	0.864	239	0.038	204.643	175.122	0.856	126	145.91	166.7	152.4	183.5439188	256.8857419	219.1492557	278.4453695	22-2_par	1.185714286	1.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.057	239	0	0	NA	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.256232942	sgMsh2	cell line
chr17	37590157	37590157	T	A	ENSMUST00000216249.1	5	ENSMUSG00000062629	missense	Q/H	65	Olfr114	ENSMUST00000216249.1:c.195A>T	ENSMUSP00000149735.1:p.Gln65His	H-2-Kb	8	5	7	MYYFLKHL	MYYFLKQL	NetMHCpan	44.3	80.7	1.822	482	0.172	196.354	286.18	1.457	280.12	164.81	80.7	44.3	310.9853997	233.2061504	292.2402293	227.8977303	22-2_par	0.1	0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.165	482	0	0	NA	17qB1	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.741726936	sgMsh2	cell line
chr18	37146108	37146108	G	A	ENSMUST00000047479.2	1	ENSMUSG00000102697	missense	V/M	714	Pcdhac2	ENSMUST00000047479.2:c.2140G>A	ENSMUSP00000039888.1:p.Val714Met	H-2-Kb	8	11	1	MSFIFLLT	VSFIFLLT	SMMPMBEC	88.255	41.662	0.472	120	0.042	121.417	50.765	0.418	58.24	254.31	46.1	124.6	55.42937734	118.2333514	41.66198901	88.25513833	22-2_par	2.314285714	2.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.052	120	0	0	NA	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.233756368	sgMsh2	cell line
chr18	31444203	31444204	AAG	A	ENSMUST00000025110.4	1	ENSMUSG00000024261	FS	LF/LX	32-33	Syt4	ENSMUST00000025110.4:c.96_97del	ENSMUSP00000025110.3:p.Phe33CysfsTer25	H-2-Kb	8	9	4	VSLCLDLL	NA	SMM	217.14	NA	NA	49	0.224	300.082	NA	NA	NA	304.54	NA	586.1	NA	217.1400833	NA	295.6242117	22-2_par	1.914285714	1.971428571	FALSE	FALSE	FALSE	1	FALSE	0	Strelka2;Vardict	2	0.2245	49	0	0	NA	18qB1	chr18-5046666-88869177	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	1	sgMsh2	cell line
chr2	14219371	14219371	T	C	ENSMUST00000077517.8	1	ENSMUSG00000061531	missense	Y/H	324	Tmem236	ENSMUST00000077517.8:c.970T>C	ENSMUSP00000076722.7:p.Tyr324His	H-2-Kb	8	7	5	VTISHIYF	VTISYIYF	NetMHCpan	290.7	79.2	0.272	151	0.046	467.702	101.36	0.217	70.5	401.16	79.2	290.7	150.9176382	584.4400914	123.5207728	534.2444264	22-2_par	0.828571429	1.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.056	151	0	0	NA	2qA2	chr2-3197272-23100032	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.251737627	sgMsh2	cell line
chr19	40183997	40183997	A	G	ENSMUST00000051846.12	1	ENSMUSG00000060613	missense	V/A	67	Cyp2c70	ENSMUST00000051846.12:c.200T>C	ENSMUSP00000060584.6:p.Val67Ala	H-2-Kb	8	8	4	VFTAYLGM	VFTVYLGM	NetMHCpan	222.9	262.8	1.179	237	0.072	300.854	281.268	0.935	358.24	428.14	262.8	222.9	238.6382195	248.7367755	299.7367541	352.9717922	22-2_par	1.128571429	1.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.09	237	0	0	NA	19qC3	chr19-40096508-61227351	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.404578329	sgMsh2	cell line
chr2	14219371	14219371	T	C	ENSMUST00000077517.8	1	ENSMUSG00000061531	missense	Y/H	324	Tmem236	ENSMUST00000077517.8:c.970T>C	ENSMUSP00000076722.7:p.Tyr324His	H-2-Kb	8	9	3	ISHIYFNY	ISYIYFNY	SMMPMBEC	134.196	13.175	0.098	151	0.046	330.687	18.379	0.056	17.45	500.21	51.4	434	19.30812048	227.3735801	13.17467771	134.1961326	22-2_par	-0.4	0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.056	151	0	0	NA	2qA2	chr2-3197272-23100032	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.251737627	sgMsh2	cell line
chr19	4867622	4867622	C	T	ENSMUST00000006626.4	1	ENSMUSG00000006457	missense	E/K	398	Actn3	ENSMUST00000006626.4:c.1192G>A	ENSMUSP00000006626.3:p.Glu398Lys	H-2-Kb	8	11	1	KIRRLQRL	EIRRLQRL	SMM	340.989	1913.11	5.61	89	0.067	481.063	5243.261	10.899	8528.85	534.82	8724.4	1652.7	1913.110256	340.9887101	1957.672319	427.3069928	22-2_par	-0.7	-0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.102	89	0	0	NA	19qA	NA	NA	NA	NA	0.9	4.045783288	POOR GOF (76.7%)	NA	NA	sgMsh2	cell line
chr19	13655071	13655071	T	C	ENSMUST00000080162.1	NA	ENSMUSG00000061387	missense	V/A	209	Olfr1490	ENSMUST00000080162.1:c.626T>C	ENSMUSP00000079057.1:p.Val209Ala	H-2-Kb	8	9	3	IAAPFFFI	IAVPFFFI	NetMHCpan	83.2	60.9	0.732	78	0.051	362.631	185.632	0.512	164.85	559.34	60.9	83.2	206.414404	306.71852	215.6453014	418.5429201	22-2_par	2.128571429	2.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.075	78	0	0	NA	19qA	chr19-7864498-38789990	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.337148607	sgMsh2	cell line
chr19	3947100	3947100	A	G	ENSMUST00000162708.6	1	ENSMUSG00000036908	missense	Y/C	507	Unc93b1	ENSMUST00000162708.6:c.1520A>G	ENSMUSP00000124272.1:p.Tyr507Cys	H-2-Kb	8	5	7	VAIFVVCL	VAIFVVYL	SMM	412.8	135.438	0.328	91	0.088	466.112	147.465	0.316	188.01	1360.96	101.9	489.9	135.4378341	412.800296	159.4924025	442.3234863	22-2_par	3.4	3.457142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.096	91	0	0	NA	19qA	NA	NA	NA	NA	0.9	4.045783288	POOR GOF (76.7%)	NA	NA	sgMsh2	cell line
chr2	14219371	14219371	T	C	ENSMUST00000077517.8	1	ENSMUSG00000061531	missense	Y/H	324	Tmem236	ENSMUST00000077517.8:c.970T>C	ENSMUSP00000076722.7:p.Tyr324His	H-2-Kb	9	9	3	ISHIYFNYV	ISYIYFNYV	NetMHC	7.81	2.62	0.335	151	0.046	37.701	7.88	0.209	2.62	7.81	3.9	10.8	11.86069123	67.46988967	11.89186581	64.60260045	22-2_par	0.314285714	0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.056	151	0	0	NA	2qA2	chr2-3197272-23100032	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.251737627	sgMsh2	cell line
chr17	67632072	67632072	T	C	ENSMUST00000097290.3	NA	ENSMUSG00000073375	missense	N/S	171	Lrrc30	ENSMUST00000097290.3:c.512A>G	ENSMUSP00000094893.2:p.Asn171Ser	H-2-Kb	9	11	1	SNYFAHIPL	NNYFAHIPL	NetMHCpan	10.7	50.6	4.729	92	0.054	36.547	197.318	5.399	147.4	15.8	50.6	10.7	247.2350273	57.29411296	282.000579	70.34771574	22-2_par	0.971428571	0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.084	92	0	0	NA	17qE1.1	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.37760644	sgMsh2	cell line
chr17	67632072	67632072	T	C	ENSMUST00000097290.3	NA	ENSMUSG00000073375	missense	N/S	171	Lrrc30	ENSMUST00000097290.3:c.512A>G	ENSMUSP00000094893.2:p.Asn171Ser	H-2-Kb	9	9	3	LSSNYFAHI	LSNNYFAHI	NetMHC	20.49	15.38	0.751	92	0.054	127.796	91.393	0.715	15.38	20.49	27.1	26.9	220.8564057	338.1504736	155.6861575	228.6914879	22-2_par	0.042857143	0.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.084	92	0	0	NA	17qE1.1	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.37760644	sgMsh2	cell line
chr19	40183997	40183997	A	G	ENSMUST00000051846.12	1	ENSMUSG00000060613	missense	V/A	67	Cyp2c70	ENSMUST00000051846.12:c.200T>C	ENSMUSP00000060584.6:p.Val67Ala	H-2-Kb	9	5	7	YGPVFTAYL	YGPVFTVYL	NetMHC	21.94	146.36	6.671	237	0.072	276.47	451.692	1.634	146.36	21.94	81.4	28	757.0246132	524.9404026	957.7452351	706.7242604	22-2_par	1.285714286	1.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.09	237	0	0	NA	19qC3	chr19-40096508-61227351	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.404578329	sgMsh2	cell line
chr18	37146108	37146108	G	A	ENSMUST00000047479.2	1	ENSMUSG00000102697	missense	V/M	714	Pcdhac2	ENSMUST00000047479.2:c.2140G>A	ENSMUSP00000039888.1:p.Val714Met	H-2-Kb	9	9	3	STMSFIFLL	STVSFIFLL	NetMHCpan	25.7	65.5	2.549	120	0.042	73.068	116.133	1.589	65.41	40.67	65.5	25.7	166.7669554	105.465399	273.0549161	178.7516256	22-2_par	2.685714286	2.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.052	120	0	0	NA	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.233756368	sgMsh2	cell line
chr18	37146108	37146108	G	A	ENSMUST00000047479.2	1	ENSMUSG00000102697	missense	V/M	714	Pcdhac2	ENSMUST00000047479.2:c.2140G>A	ENSMUSP00000039888.1:p.Val714Met	H-2-Kb	9	11	1	MSFIFLLTI	VSFIFLLTI	NetMHCpan	48.8	24.8	0.508	120	0.042	76.915	32.082	0.417	22.86	52.88	24.8	48.8	39.36497682	100.9508546	41.23348098	106.721028	22-2_par	3.071428571	3.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.052	120	0	0	NA	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.233756368	sgMsh2	cell line
chr17	37590157	37590157	T	A	ENSMUST00000216249.1	5	ENSMUSG00000062629	missense	Q/H	65	Olfr114	ENSMUST00000216249.1:c.195A>T	ENSMUSP00000149735.1:p.Gln65His	H-2-Kb	9	4	8	PMYYFLKHL	PMYYFLKQL	SMM	25.948	31.341	1.208	482	0.172	62.493	81.467	1.304	121.03	80.88	158.8	80.6	31.34079437	25.9483651	41.90347115	44.38640791	22-2_par	0.1	0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.165	482	0	0	NA	17qB1	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.741726936	sgMsh2	cell line
chr17	74017771	74017771	A	G	ENSMUST00000043458.8	1	ENSMUSG00000038541	missense	F/L	234	Srd5a2	ENSMUST00000043458.8:c.700T>C	ENSMUSP00000048862.7:p.Phe234Leu	H-2-Kb	9	5	7	AFYHHRLYL	AFYHHRFYL	NetMHC	108.18	97.74	0.903	130	0.077	118.953	104.351	0.877	97.74	108.18	105.4	139.3	103.3023021	115.3745446	120.2956713	122.5321348	22-2_par	-0.842857143	-0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.067	130	0	0	NA	17qE2	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.301186089	sgMsh2	cell line
chr19	21835601	21835601	T	C	ENSMUST00000096194.8	5	ENSMUSG00000024754	missense	F/L	1057	Cemip2	ENSMUST00000096194.8:c.3169T>C	ENSMUSP00000093908.2:p.Phe1057Leu	H-2-Kb	9	9	3	TTLLYLVNF	TTFLYLVNF	NetMHC	155.34	58.14	0.374	91	0.055	243.3	74.247	0.305	58.14	155.34	66.6	319.3	92.49324152	259.483651	81.893607	227.1171867	22-2_par	1.942857143	1.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.07	91	0	0	NA	19qB	chr19-7864498-38789990	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.314672034	sgMsh2	cell line
chr19	21798055	21798055	T	C	ENSMUST00000096194.8	5	ENSMUSG00000024754	missense	F/L	221	Cemip2	ENSMUST00000096194.8:c.661T>C	ENSMUSP00000093908.2:p.Phe221Leu	H-2-Kb	9	3	9	SMPIFGKKL	SMPIFGKKF	NetMHCpan	178.2	706.7	3.966	124	0.024	369.291	808.422	2.189	706.32	201.24	706.7	178.2	910.1437686	539.6472894	929.5012968	537.3410257	22-2_par	0.185714286	0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.045	124	0	0	NA	19qB	chr19-7864498-38789990	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.202289164	sgMsh2	cell line
chr18	37519846	37519846	A	T	ENSMUST00000192409.1	NA	ENSMUSG00000073591	missense	M/L	456	Pcdhb22	ENSMUST00000192409.1:c.1366A>T	ENSMUSP00000141521.1:p.Met456Leu	H-2-Kb	9	4	8	FTQVSYTLL	FTQVSYTML	NetMHC	207.55	200.19	0.965	200	0.105	420.938	474.506	1.127	200.19	207.55	346.3	346.3	602.7122243	495.5756965	671.8154697	621.2265381	22-2_par	0.785714286	0.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.112	200	0	0	NA	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.503475254	sgMsh2	cell line
chr18	37974113	37974113	A	T	ENSMUST00000042944.8	1	ENSMUSG00000024451	missense	S/T	1376	Arap3	ENSMUST00000042944.8:c.4126T>A	ENSMUSP00000035662.7:p.Ser1376Thr	H-2-Kb	9	8	4	RTLTMFFPM	RTLSMFFPM	NetMHCpan	88.9	82.3	0.926	84	0.071	277.309	202.44	0.73	203.92	258.06	82.3	88.9	200.9601749	296.558243	302.8656361	324.526376	22-2_par	1.557142857	1.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.094	84	0	0	NA	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.422559588	sgMsh2	cell line
chr17	74017771	74017771	A	G	ENSMUST00000043458.8	1	ENSMUSG00000038541	missense	F/L	234	Srd5a2	ENSMUST00000043458.8:c.700T>C	ENSMUSP00000048862.7:p.Phe234Leu	H-2-Kb	9	3	9	MQAFYHHRL	MQAFYHHRF	NetMHCpan	88	481.4	5.47	130	0.077	459.813	1021.124	2.221	942.61	283.93	481.4	88	1117.146168	662.384254	1099.63866	635.696763	22-2_par	-0.542857143	-0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.067	130	0	0	NA	17qE2	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.301186089	sgMsh2	cell line
chr17	37590157	37590157	T	A	ENSMUST00000216249.1	5	ENSMUSG00000062629	missense	Q/H	65	Olfr114	ENSMUST00000216249.1:c.195A>T	ENSMUSP00000149735.1:p.Gln65His	H-2-Kb	9	6	6	YYFLKHLSI	YYFLKQLSI	NetMHC	353.59	459.77	1.3	482	0.172	404.154	680.042	1.683	459.77	353.59	610	367.5	750.0841699	486.5304206	780.2791461	440.8085403	22-2_par	1	1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.165	482	0	0	NA	17qB1	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.741726936	sgMsh2	cell line
chr19	5339469	5339469	A	G	ENSMUST00000043380.4	1	ENSMUSG00000038498	missense	I/V	471	Catsper1	ENSMUST00000043380.4:c.1411A>G	ENSMUSP00000045430.3:p.Ile471Val	H-2-Kb	9	4	8	RVLRRLSVL	RVLRRLSIL	NetMHCpan	362.6	390.6	1.077	75	0.04	449.367	407.175	0.906	377.14	420.93	390.6	362.6	423.7502818	503.6281538	490.0608399	477.8042407	22-2_par	0.828571429	0.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.075	75	0	0	NA	19qA	NA	NA	NA	NA	0.9	4.045783288	POOR GOF (76.7%)	NA	NA	sgMsh2	cell line
chr2	87269703	87269703	A	C	ENSMUST00000090717.4	NA	ENSMUSG00000070855	missense	K/N	286	Olfr1116	ENSMUST00000090717.4:c.858A>C	ENSMUSP00000132837.2:p.Lys286Asn	H-2-Db	9	6	6	YSLRNNDIM	YSLRNKDIM	NetMHC	5.13	4.95	0.965	125	0.128	13.047	12.646	0.969	4.95	5.13	5.9	5.6	19.39188379	20.49368233	23.04464382	24.86394291	22-2_par	-0.685714286	-0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.135	125	0	0	NA	2qD	chr2-76868189-104915002	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.606867493	sgMsh2	cell line
chr2	87388404	87388404	T	C	ENSMUST00000215371.1	5	ENSMUSG00000047594	missense	I/T	233	Olfr1122	ENSMUST00000215371.1:c.698T>C	ENSMUSP00000149403.1:p.Ile233Thr	H-2-Db	9	10	2	KTICNVLKL	KIICNVLKL	NetMHCpan	151.3	494.9	3.271	168	0.101	422.599	1129.566	2.673	1132.92	247.31	494.9	151.3	1126.21161	597.8882245	1344.528462	687.9707912	22-2_par	1.628571429	1.628571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.118	168	0	0	NA	2qD	chr2-76868189-104915002	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.530447142	sgMsh2	cell line
chr2	82978139	82978139	A	G	ENSMUST00000143764.8	5	ENSMUSG00000075249	missense	N/D	1601	Fsip2	ENSMUST00000143764.8:c.4801A>G	ENSMUSP00000120314.2:p.Asn1601Asp	H-2-Db	9	4	8	GSVVNVGDL	GSVVNVGNL	SMMPMBEC	313.018	302.392	0.966	118	0.034	427.399	357.539	0.837	210.93	328.03	536.2	917.1	412.6862508	526.7687464	302.3917929	313.0184957	22-2_par	1.285714286	1.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.05	118	0	0	NA	2qD	chr2-76868189-104915002	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.224765738	sgMsh2	cell line
chr2	129459322	129459322	T	C	ENSMUST00000050309.5	1	ENSMUSG00000043727	missense	I/V	479	F830045P16Rik	ENSMUST00000050309.5:c.1435A>G	ENSMUSP00000058047.5:p.Ile479Val	H-2-Kb	8	12	2	VVYVYRRW	VIYVYRRW	NetMHC	9.13	7.25	0.794	223	0.072	18.673	12.766	0.684	7.25	9.13	379.8	387.3	9.135661511	14.34630303	16.39607892	23.00064421	22-2_par	-0.585714286	0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.063	223	0	0	NA	2qF1	chr2-104975268-178394556	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.28320483	sgMsh2	cell line
chr2	86385588	86385588	A	G	ENSMUST00000213998.1	5	ENSMUSG00000075186	missense	F/L	277	Olfr1058	ENSMUST00000213998.1:c.829T>C	ENSMUSP00000151037.1:p.Phe277Leu	H-2-Kb	8	8	4	ASILYTMV	ASIFYTMV	NetMHC	17.8	39.94	2.244	147	0.095	56.676	67.036	1.183	39.94	17.8	26.7	33.6	94.13258822	83.89575756	95.8826437	79.75170931	22-2_par	1.657142857	1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.112	147	0	0	NA	2qD	chr2-76868189-104915002	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.503475254	sgMsh2	cell line
chr2	86639522	86639522	A	G	ENSMUST00000216851.1	NA	ENSMUSG00000110804	missense	F/S	62	Olfr1084	ENSMUST00000216851.1:c.185T>C	ENSMUSP00000150546.1:p.Phe62Ser	H-2-Kb	8	5	7	QTPMYFSL	QTPMYFFL	NetMHC	28.92	61.82	2.138	216	0.06	96.549	98.864	1.024	61.82	28.92	78.4	52.9	119.3273511	140.197413	155.8619122	169.7227266	22-2_par	0.585714286	0.585714286	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.058	216	0	0	NA	2qD	chr2-76868189-104915002	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.260728256	sgMsh2	cell line
chr2	71434034	71434034	T	C	ENSMUST00000112122.8	5	ENSMUSG00000027018	missense	V/A	272	Hat1	ENSMUST00000112122.8:c.815T>C	ENSMUSP00000107750.2:p.Val272Ala	H-2-Kb	8	10	2	TALFFHFL	TVLFFHFL	NetMHCpan	15.6	19.9	1.276	116	0.103	34.939	33.772	0.967	75.62	50.52	19.9	15.6	32.48927349	31.96980594	35.05419514	37.90879676	22-2_par	2.085714286	2.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.11	116	0	0	NA	2qC2	chr2-36389686-76824575	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.494484624	sgMsh2	cell line
chr2	86639532	86639532	T	A	ENSMUST00000216851.1	NA	ENSMUSG00000110804	missense	M/L	59	Olfr1084	ENSMUST00000216851.1:c.175A>T	ENSMUSP00000150546.1:p.Met59Leu	H-2-Kb	8	8	4	QTPLYFFL	QTPMYFFL	NetMHC	72.11	61.82	0.857	204	0.054	89.41	98.864	1.106	61.82	72.11	78.4	88.3	119.3273511	90.51905263	155.8619122	140.5206015	22-2_par	1.371428571	1.371428571	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.054	204	0	0	NA	2qD	chr2-76868189-104915002	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.242746997	sgMsh2	cell line
chr2	101954946	101954946	T	A	ENSMUST00000058790.11	1	ENSMUSG00000048058	missense	H/L	228	Ldlrad3	ENSMUST00000058790.11:c.683A>T	ENSMUSP00000054134.5:p.His228Leu	H-2-Kb	8	4	8	VVLDHPHL	VVLDHPHH	NetMHCpan	67.7	21783	321.758	69	0.058	83.773	16589.337	198.028	24495	72.76	21783	67.7	11395.67356	94.78508415	5020.41941	116.0753495	22-2_par	0.042857143	0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.092	69	0	0	NA	2qE2	chr2-76868189-104915002	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.413568958	sgMsh2	cell line
chr2	75900231	75900231	T	C	ENSMUST00000047232.13	1	ENSMUSG00000042410	missense	Y/H	522	Agps	ENSMUST00000047232.13:c.1564T>C	ENSMUSP00000041967.7:p.Tyr522His	H-2-Kb	8	5	7	RGYLLTHV	RGYLLTYV	NetMHC	81.93	116.7	1.424	339	0.124	195.518	206.662	1.057	116.7	81.93	168	142.3	245.323979	256.8857419	255.7054591	248.7367755	22-2_par	0.885714286	0.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.125	339	0	0	NA	2qC3	chr2-36389686-76824575	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.561914346	sgMsh2	cell line
chr2	173571114	173571114	C	T	ENSMUST00000119453.7	2	ENSMUSG00000027517	missense	A/T	194	Ankrd60	ENSMUST00000119453.7:c.580G>A	ENSMUSP00000113291.1:p.Ala194Thr	H-2-Kb	8	8	4	AQRTFVAL	AQRAFVAL	SMM	106.842	109.079	1.021	103	0.049	114.486	135.569	1.184	140.6	109.92	267.5	223.4	109.0787117	106.8415057	130.5389154	119.0529058	22-2_par	0.557142857	0.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.073	103	0	0	NA	2qH3	chr2-104975268-178394556	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.328157978	sgMsh2	cell line
chr2	86639522	86639522	A	G	ENSMUST00000216851.1	NA	ENSMUSG00000110804	missense	F/S	62	Olfr1084	ENSMUST00000216851.1:c.185T>C	ENSMUSP00000150546.1:p.Phe62Ser	H-2-Kb	8	8	4	MYFSLRHL	MYFFLRHL	NetMHCpan	117.8	27.8	0.236	216	0.06	158.581	139.947	0.882	127.58	155.45	27.8	117.8	152.3140619	165.8593656	158.0301673	161.7111628	22-2_par	0.085714286	0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.058	216	0	0	NA	2qD	chr2-76868189-104915002	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.260728256	sgMsh2	cell line
chr2	129459322	129459322	T	C	ENSMUST00000050309.5	1	ENSMUSG00000043727	missense	I/V	479	F830045P16Rik	ENSMUST00000050309.5:c.1435A>G	ENSMUSP00000058047.5:p.Ile479Val	H-2-Kb	8	8	6	VSLLVVYV	VSLLVIYV	SMM	144.79	158.03	1.091	223	0.072	172.91	198.284	1.147	203.93	179.96	838.2	571.2	158.0301673	144.7904774	192.6371303	165.8593656	22-2_par	2.585714286	2.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.063	223	0	0	NA	2qF1	chr2-104975268-178394556	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.28320483	sgMsh2	cell line
chr2	126920402	126920402	A	G	ENSMUST00000028844.10	1	ENSMUSG00000027366	missense	I/T	253	Sppl2a	ENSMUST00000028844.10:c.758T>C	ENSMUSP00000028844.4:p.Ile253Thr	H-2-Kb	8	6	6	LVYVMTAI	LVYVMIAI	NetMHCpan	130.7	536.6	4.106	208	0.048	295.448	487.939	1.652	425.55	208.3	536.6	130.7	565.9003988	512.5544401	439.2785529	382.5956254	22-2_par	2.085714286	2.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.053	208	0	0	NA	2qF1	chr2-104975268-178394556	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.238251683	sgMsh2	cell line
chr2	86639532	86639532	T	A	ENSMUST00000216851.1	NA	ENSMUSG00000110804	missense	M/L	59	Olfr1084	ENSMUST00000216851.1:c.175A>T	ENSMUSP00000150546.1:p.Met59Leu	H-2-Kb	8	11	1	LYFFLRHL	MYFFLRHL	NetMHCpan	52	27.8	0.535	204	0.054	280.485	139.947	0.499	127.58	250.7	27.8	52	152.3140619	361.1935614	158.0301673	310.2701531	22-2_par	0.6	0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.054	204	0	0	NA	2qD	chr2-76868189-104915002	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.242746997	sgMsh2	cell line
chr2	71434034	71434034	T	C	ENSMUST00000112122.8	5	ENSMUSG00000027018	missense	V/A	272	Hat1	ENSMUST00000112122.8:c.815T>C	ENSMUSP00000107750.2:p.Val272Ala	H-2-Kb	8	9	3	ITALFFHF	ITVLFFHF	NetMHCpan	144.6	191.2	1.322	116	0.103	210.489	126.425	0.601	82.52	251.12	191.2	144.6	153.3698525	227.8977303	99.48096742	193.0812048	22-2_par	1.442857143	1.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.11	116	0	0	NA	2qC2	chr2-36389686-76824575	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.494484624	sgMsh2	cell line
chr2	28984461	28984461	T	C	ENSMUST00000157048.3	1	ENSMUSG00000079502	missense	N/S	119	Cfap77	ENSMUST00000157048.3:c.356A>G	ENSMUSP00000125742.1:p.Asn119Ser	H-2-Kb	8	8	4	LTRSYIAM	LTRNYIAM	NetMHC	271.61	230.5	0.849	55	0.091	302.607	323.585	1.069	230.5	271.61	421.4	353.3	304.6070846	294.9442949	342.5626424	310.2701531	22-2_par	0.128571429	0.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.11	55	0	0	NA	2qA3	chr2-23118144-36377967	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.494484624	sgMsh2	cell line
chr2	168506885	168506885	T	C	ENSMUST00000074618.9	1	ENSMUSG00000027544	missense	H/R	674	Nfatc2	ENSMUST00000074618.9:c.2021A>G	ENSMUSP00000074198.3:p.His674Arg	H-2-Kb	8	10	2	QRFTYHPV	QHFTYHPV	SMM	246.456	92.841	0.377	140	0.193	427.858	112.294	0.262	85.03	535.28	216.6	931	92.84104069	246.456343	131.7467771	320.4350395	22-2_par	-0.614285714	-0.614285714	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.203	140	0	0	NA	2qH3	chr2-104975268-178394556	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.912548897	sgMsh2	cell line
chr2	86786671	86786671	A	C	ENSMUST00000213354.1	3	ENSMUSG00000047969	missense	N/H	314	Olfr1093	ENSMUST00000213354.1:c.940A>C	ENSMUSP00000149944.1:p.Asn314His	H-2-Kb	8	8	6	VKVAFHKL	VKVAFNKL	SMM	167.78	201.252	1.199	59	0.186	311.361	353.428	1.135	485.17	596.58	652.5	445	201.251905	167.7799266	221.6868845	177.7215122	22-2_par	0.228571429	0.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.203	59	0	0	NA	2qD	chr2-76868189-104915002	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.912548897	sgMsh2	cell line
chr2	111379641	111379641	C	T	ENSMUST00000062407.5	5	ENSMUSG00000108931	missense	L/F	214	Olfr1284	ENSMUST00000062407.5:c.640C>T	ENSMUSP00000052153.4:p.Leu214Phe	H-2-Kb	8	6	6	GTFFLFLL	GTFFLLLL	SMMPMBEC	233.206	393.315	1.687	289	0.066	307.351	505.044	1.643	1489.35	921.96	503.4	303	506.6872779	311.7022951	393.3145385	233.2061504	22-2_par	2.728571429	2.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.066	289	0	0	NA	2qE3	chr2-104975268-178394556	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.296690774	sgMsh2	cell line
chr2	111379641	111379641	C	T	ENSMUST00000062407.5	5	ENSMUSG00000108931	missense	L/F	214	Olfr1284	ENSMUST00000062407.5:c.640C>T	ENSMUSP00000052153.4:p.Leu214Phe	H-2-Kb	8	5	7	LGTFFLFL	LGTFFLLL	NetMHCpan	209.5	135.9	0.649	289	0.066	291.526	427.881	1.468	829.64	973.03	135.9	209.5	419.5077612	278.4453695	436.2545806	304.6070846	22-2_par	2.128571429	2.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.066	289	0	0	NA	2qE3	chr2-104975268-178394556	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.296690774	sgMsh2	cell line
chr2	71434034	71434034	T	C	ENSMUST00000112122.8	5	ENSMUSG00000027018	missense	V/A	272	Hat1	ENSMUST00000112122.8:c.815T>C	ENSMUSP00000107750.2:p.Val272Ala	H-2-Kb	9	9	3	ITALFFHFL	ITVLFFHFL	NetMHCpan	14.1	15.3	1.085	116	0.103	66.865	56.412	0.844	13.97	25.31	15.3	14.1	97.52366186	108.4201491	102.8608242	132.5104107	22-2_par	2.085714286	2.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.11	116	0	0	NA	2qC2	chr2-36389686-76824575	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.494484624	sgMsh2	cell line
chr2	112129977	112129977	A	G	ENSMUST00000099596.1	NA	ENSMUSG00000109801	missense	I/T	280	Olfr1316	ENSMUST00000099596.1:c.839T>C	ENSMUSP00000097191.1:p.Ile280Thr	H-2-Kb	9	10	2	VTTPFLNPV	VITPFLNPV	NetMHC	99.78	98.11	0.983	159	0.088	229.726	206.995	0.901	98.11	99.78	202.1	208.2	211.8897751	251.2522734	313.5089908	343.7557727	22-2_par	0.485714286	0.614285714	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;MuSe;Vardict	3	0.086	159	0	0	NA	2qE3	chr2-104975268-178394556	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.38659707	sgMsh2	cell line
chr2	87833450	87833450	A	G	ENSMUST00000215230.1	5	ENSMUSG00000061875	missense	H/R	137	Olfr1148	ENSMUST00000215230.1:c.410A>G	ENSMUSP00000149438.1:p.His137Arg	H-2-Kb	9	7	5	CNPLRYPLV	CNPLHYPLV	NetMHC	101.28	92.71	0.915	228	0.039	172.082	167.537	0.974	92.71	101.28	202.3	299.5	132.7730709	128.2655418	237.2739171	215.8986864	22-2_par	0.4	0.4	TRUE	FALSE	FALSE	1	FALSE	1	Mutect2;Vardict	2	0.049	228	0	0	NA	2qD	chr2-76868189-104915002	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.220270423	sgMsh2	cell line
chr2	85438711	85438711	T	C	ENSMUST00000216933.1	5	ENSMUSG00000075218	missense	Y/C	149	Olfr995	ENSMUST00000216933.1:c.446A>G	ENSMUSP00000149952.1:p.Tyr149Cys	H-2-Kb	9	4	8	VQLVAFSCL	VQLVAFSYL	NetMHC	111.22	18.59	0.167	140	0.114	233.175	105.817	0.454	18.59	111.22	39.8	155.1	171.8343562	311.2504586	259.5673122	384.8132346	22-2_par	2.585714286	2.585714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.115	140	0	0	NA	2qD	chr2-76868189-104915002	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.516961198	sgMsh2	cell line
chr2	90252160	90252160	A	G	ENSMUST00000213968.1	5	ENSMUSG00000075063	missense	I/T	276	Olfr142	ENSMUST00000213968.1:c.827T>C	ENSMUSP00000150216.1:p.Ile276Thr	H-2-Kb	9	6	6	VFYTVTTPM	VFYTVITPM	NetMHCpan	130.1	124.2	0.955	182	0.055	163.636	161.725	0.988	151.56	151.03	124.2	130.1	174.6264398	176.2422384	171.8897579	186.7454375	22-2_par	0.157142857	1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.053	182	0	0	NA	2qE1	chr2-76868189-104915002	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.238251683	sgMsh2	cell line
chr2	156525002	156525002	A	G	ENSMUST00000029155.15	5	ENSMUSG00000027624	missense	N/S	597	Epb41l1	ENSMUST00000029155.15:c.1790A>G	ENSMUSP00000029155.8:p.Asn597Ser	H-2-Kb	9	5	7	AVFLKDSHL	AVFLKDNHL	SMM	130.35	149.317	1.146	75	0.107	144.414	205.436	1.423	245.58	151.66	311.5	189.1	149.3172559	130.3496892	165.2913018	137.1671136	22-2_par	-0.142857143	0.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.102	75	0	0	NA	2qH1	chr2-104975268-178394556	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.458522106	sgMsh2	cell line
chr2	127350178	127350178	T	C	ENSMUST00000089673.9	1	ENSMUSG00000050468	missense	F/L	218	Astl	ENSMUST00000089673.9:c.652T>C	ENSMUSP00000087102.3:p.Phe218Leu	H-2-Kb	9	3	9	ILPGFEINL	ILPGFEINF	NetMHC	241.52	924.22	3.827	458	0.052	473.998	1053.259	2.222	924.22	241.52	1004.7	294.7	1101.818348	653.2960014	1239.5099	716.5557742	22-2_par	0.3	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.053	458	0	0	NA	2qF1	chr2-104975268-178394556	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.238251683	sgMsh2	cell line
chr2	86385588	86385588	A	G	ENSMUST00000213998.1	5	ENSMUSG00000075186	missense	F/L	277	Olfr1058	ENSMUST00000213998.1:c.829T>C	ENSMUSP00000151037.1:p.Phe277Leu	H-2-Kb	9	10	2	ILYTMVIPM	IFYTMVIPM	NetMHCpan	123.3	149	1.208	147	0.095	233.758	116.197	0.497	127.62	244.03	149	123.3	102.8276712	267.3683525	104.7731497	223.4858341	22-2_par	1.271428571	2.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.112	147	0	0	NA	2qD	chr2-76868189-104915002	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.503475254	sgMsh2	cell line
chr2	149409995	149409995	A	G	ENSMUST00000047008.8	1	ENSMUSG00000033156	missense	N/S	130	Cst10	ENSMUST00000047008.8:c.389A>G	ENSMUSP00000043520.2:p.Asn130Ser	H-2-Kb	9	4	8	VICNFQISV	VICNFQINV	NetMHC	283.7	109.81	0.387	176	0.08	496.889	385.962	0.777	109.81	283.7	330.1	496.9	559.8993973	651.7934622	441.8247089	496.8782653	22-2_par	0.885714286	1.642857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.089	176	0	0	NA	2qG3	chr2-104975268-178394556	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.400083014	sgMsh2	cell line
chr2	86385588	86385588	A	G	ENSMUST00000213998.1	5	ENSMUSG00000075186	missense	F/L	277	Olfr1058	ENSMUST00000213998.1:c.829T>C	ENSMUSP00000151037.1:p.Phe277Leu	H-2-Kb	9	7	5	VASILYTMV	VASIFYTMV	NetMHCpan	284.3	26.3	0.093	147	0.095	319.038	62.8	0.197	28.94	323.12	26.3	284.3	102.5911741	376.7992242	96.66071427	314.9560825	22-2_par	1.657142857	1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.112	147	0	0	NA	2qD	chr2-76868189-104915002	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.503475254	sgMsh2	cell line
chr2	126920402	126920402	A	G	ENSMUST00000028844.10	1	ENSMUSG00000027366	missense	I/T	253	Sppl2a	ENSMUST00000028844.10:c.758T>C	ENSMUSP00000028844.4:p.Ile253Thr	H-2-Kb	9	6	6	LVYVMTAIF	LVYVMIAIF	SMM	156.715	155.278	0.991	208	0.048	276.131	277.324	1.004	353.16	333.36	936.8	427.5	155.2780255	156.7147954	201.4883776	218.9021363	22-2_par	1.885714286	2.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.053	208	0	0	NA	2qF1	chr2-104975268-178394556	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.238251683	sgMsh2	cell line
chr2	86639532	86639532	T	A	ENSMUST00000216851.1	NA	ENSMUSG00000110804	missense	M/L	59	Olfr1084	ENSMUST00000216851.1:c.175A>T	ENSMUSP00000150546.1:p.Met59Leu	H-2-Kb	9	10	2	PLYFFLRHL	PMYFFLRHL	NetMHCpan	163.3	44.7	0.274	204	0.054	225.45	43.691	0.194	63.56	351.36	44.7	163.3	25.59234019	195.4834522	42.68251484	255.4171179	22-2_par	0.6	0.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.054	204	0	0	NA	2qD	chr2-76868189-104915002	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.242746997	sgMsh2	cell line
chr2	86639522	86639522	A	G	ENSMUST00000216851.1	NA	ENSMUSG00000110804	missense	F/S	62	Olfr1084	ENSMUST00000216851.1:c.185T>C	ENSMUSP00000150546.1:p.Phe62Ser	H-2-Kb	9	7	5	PMYFSLRHL	PMYFFLRHL	SMM	130.65	25.592	0.196	216	0.06	292.469	43.691	0.149	63.56	383.45	44.7	564.2	25.59234019	130.6501763	42.68251484	201.4883776	22-2_par	0.085714286	0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.058	216	0	0	NA	2qD	chr2-76868189-104915002	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.260728256	sgMsh2	cell line
chr3	104027882	104027882	T	C	ENSMUST00000121198.7	5	ENSMUSG00000052539	missense	I/V	912	Magi3	ENSMUST00000121198.7:c.2734A>G	ENSMUSP00000112934.1:p.Ile912Val	H-2-Db	9	3	9	ISAVNGQSV	ISAVNGQSI	NetMHCpan	174.8	67.2	0.384	116	0.095	407.772	153.034	0.375	83.42	287.56	67.2	174.8	222.6486161	527.9830737	257.970473	642.0516997	22-2_par	0.285714286	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.098	116	0	0	NA	3qF2.2	chr3-102934722-110144277	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.440540847	sgMsh2	cell line
chr3	121991029	121991029	A	G	ENSMUST00000037958.13	1	ENSMUSG00000039831	missense	T/A	202	Arhgap29	ENSMUST00000037958.13:c.604A>G	ENSMUSP00000044624.7:p.Thr202Ala	H-2-Db	9	6	6	LLLKNADSI	LLLKNTDSI	NetMHCpan	207.7	259.6	1.25	79	0.152	309.467	313.089	1.012	422.39	326.18	259.6	207.7	307.3406462	312.3345299	318.837944	306.5984818	22-2_par	-0.228571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.129	79	0	0	NA	3qG1	chr3-114216718-159913826	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.579895605	sgMsh2	cell line
chr3	103062498	103062498	A	T	ENSMUST00000029445.12	1	ENSMUSG00000027852	missense	I/F	139	Nras	ENSMUST00000029445.12:c.415A>T	ENSMUSP00000029445.6:p.Ile139Phe	H-2-Kb	8	7	5	KSYGFPFI	KSYGIPFI	NetMHCpan	22.8	604.9	26.531	263	0.171	38.767	1579.388	40.741	2607.34	22.99	604.9	22.8	1720.838049	54.54312289	1437.937467	57.50955406	22-2_par	0.857142857	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.168	263	0	0	NA	3qF2.2	chr3-102934722-110144277	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.75521288	sgMsh2	cell line
chr3	138152306	138152306	G	A	ENSMUST00000162864.7	1	ENSMUSG00000004127	missense	V/M	205	Trmt10a	ENSMUST00000162864.7:c.613G>A	ENSMUSP00000125749.1:p.Val205Met	H-2-Kb	8	8	4	KAYMIGGL	KAYVIGGL	NetMHCpan	42.5	59.2	1.393	119	0.05	139.932	139.696	0.998	69.14	60.21	59.2	42.5	277.1660292	328.6548155	210.2519343	219.6544469	22-2_par	1.414285714	1.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.041	119	0	0	NA	3qG3	chr3-114216718-159913826	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.184307905	sgMsh2	cell line
chr3	58541123	58541123	GA	G	ENSMUST00000029387.14	1	ENSMUSG00000027810	FS	K/X	126	Eif2a	ENSMUST00000029387.14:c.382del	ENSMUSP00000029387.8:p.Met128CysfsTer110	H-2-Kb	8	48	0	INYICKKL	NA	NetMHCpan	33.3	NA	NA	71	0.141	68.087	NA	NA	NA	69.38	NA	33.3	NA	77.57825382	NA	66.79439184	22-2_par	-0.257142857	-0.157142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.187	71	0	0	NA	3qD	chr3-10012637-102854538	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.840623861	sgMsh2	cell line
chr3	58541123	58541123	GA	G	ENSMUST00000029387.14	1	ENSMUSG00000027810	FS	K/X	126	Eif2a	ENSMUST00000029387.14:c.382del	ENSMUSP00000029387.8:p.Met128CysfsTer110	H-2-Kb	8	102	0	ASLKLIRL	NA	NetMHC	101.91	NA	NA	71	0.141	149.082	NA	NA	NA	101.91	NA	150	NA	153.3698525	NA	148.1630809	22-2_par	0.957142857	0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.187	71	0	0	NA	3qD	chr3-10012637-102854538	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.840623861	sgMsh2	cell line
chr3	58541123	58541123	GA	G	ENSMUST00000029387.14	1	ENSMUSG00000027810	FS	K/X	126	Eif2a	ENSMUST00000029387.14:c.382del	ENSMUSP00000029387.8:p.Met128CysfsTer110	H-2-Kb	8	31	0	LTTKFTSL	NA	NetMHCpan	80.2	NA	NA	71	0.141	141.709	NA	NA	NA	108.94	NA	80.2	NA	188.2521739	NA	174.4777291	22-2_par	-0.028571429	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.187	71	0	0	NA	3qD	chr3-10012637-102854538	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.840623861	sgMsh2	cell line
chr3	94864204	94864204	A	G	ENSMUST00000107270.8	1	ENSMUSG00000038902	missense	T/A	229	Pogz	ENSMUST00000107270.8:c.685A>G	ENSMUSP00000102891.2:p.Thr229Ala	H-2-Kb	8	5	7	TTNTFTAV	TTNTFTTV	SMM	150.918	251.038	1.663	49	0.122	236.347	420.134	1.778	585.15	310.61	614.7	657.1	251.0383085	150.9176382	255.1173529	162.0839455	22-2_par	0.457142857	0.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.122	49	0	0	NA	3qF2.1	chr3-10012637-102854538	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.548428401	sgMsh2	cell line
chr3	30936367	30936367	A	G	ENSMUST00000168645.7	1	ENSMUSG00000037652	missense	L/S	555	Phc3	ENSMUST00000168645.7:c.1664T>C	ENSMUSP00000130142.1:p.Leu555Ser	H-2-Kb	8	9	3	VQSPFQTL	VQLPFQTL	NetMHCpan	231.9	49.1	0.212	74	0.095	399.049	54.042	0.135	20.76	427.64	49.1	231.9	58.9847849	370.458872	88.45858744	549.2119775	22-2_par	-0.5	-0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.124	74	0	0	NA	3qA3	chr3-10012637-102854538	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.557419031	sgMsh2	cell line
chr3	132734814	132734814	G	T	ENSMUST00000169172.4	5	ENSMUSG00000028030	missense	V/F	537	Tbck	ENSMUST00000169172.4:c.1609G>T	ENSMUSP00000129205.1:p.Val537Phe	H-2-Kb	8	9	3	WVFSHPDL	WVVSHPDL	SMMPMBEC	237.542	2073.672	8.73	114	0.088	312.739	3429.563	10.966	5506	557.7	4516.3	372.7	2342.825811	252.7784229	2073.671696	237.5417764	22-2_par	0.242857143	0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.125	114	0	0	NA	3qG3	chr3-114216718-159913826	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.561914346	sgMsh2	cell line
chr4	129472464	129472464	A	G	ENSMUST00000048162.9	1	ENSMUSG00000040859	missense	Y/C	190	Bsdc1	ENSMUST00000048162.9:c.569A>G	ENSMUSP00000048742.8:p.Tyr190Cys	H-2-Kb	8	11	1	CFYKVHQL	YFYKVHQL	SMM	212.687	175.687	0.826	115	0.096	412.423	281.684	0.683	459.32	651.42	353.6	500.7	175.6871509	212.686537	209.7683683	324.1455024	22-2_par	-0.157142857	-0.157142857	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.098	115	0	0	NA	4qD2.2	chr4-114231334-147618793	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.440540847	sgMsh2	cell line
chr3	82541039	82541039	A	C	ENSMUST00000029633.4	2	ENSMUSG00000028004	missense	V/G	143	Npy2r	ENSMUST00000029633.4:c.428T>G	ENSMUSP00000029633.4:p.Val143Gly	H-2-Kb	8	7	5	ITLTGIAL	ITLTVIAL	SMMPMBEC	227.898	108.578	0.476	49	0.102	443.68	138.489	0.312	168.4	681.37	211.2	626.3	91.14650073	261.0597994	108.5775406	227.8977303	22-2_par	1.728571429	1.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.1	49	0	0	NA	3qE3	chr3-10012637-102854538	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.449531476	sgMsh2	cell line
chr3	157988715	157988715	T	G	ENSMUST00000040787.12	5	ENSMUSG00000039988	missense	D/E	284	Ankrd13c	ENSMUST00000040787.12:c.852T>G	ENSMUSP00000038662.8:p.Asp284Glu	H-2-Kb	8	4	8	LSFIFNGE	LSFIFNGD	SMM	85.063	176.905	2.08	156	0.083	420.828	1510.102	3.588	3452.52	753.4	2843.3	1405.5	176.9049561	85.06286381	144.7904774	88.25513833	22-2_par	0.271428571	1.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.093	156	0	0	NA	3qH4	chr3-114216718-159913826	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.418064273	sgMsh2	cell line
chr3	154611510	154611510	A	G	ENSMUST00000029850.14	1	ENSMUSG00000028199	missense	N/S	122	Cryz	ENSMUST00000029850.14:c.365A>G	ENSMUSP00000029850.8:p.Asn122Ser	H-2-Kb	9	10	2	LSFRQGAAL	LNFRQGAAL	NetMHC	75.07	143.31	1.909	27	0.185	250.996	302.447	1.205	143.31	75.07	86.7	86.8	501.3141926	471.0966327	461.5832068	415.1929781	22-2_par	0.257142857	0.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.185	27	0	0	NA	3qH4	chr3-114216718-159913826	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.831633231	sgMsh2	cell line
chr3	58541123	58541123	GA	G	ENSMUST00000029387.14	1	ENSMUSG00000027810	FS	K/X	126	Eif2a	ENSMUST00000029387.14:c.382del	ENSMUSP00000029387.8:p.Met128CysfsTer110	H-2-Kb	9	58	0	LIYHLEPNL	NA	NetMHC	94.67	NA	NA	71	0.141	152.265	NA	NA	NA	94.67	NA	157.6	NA	146.9298381	NA	158.9461453	22-2_par	-0.785714286	0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.187	71	0	0	NA	3qD	chr3-10012637-102854538	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.840623861	sgMsh2	cell line
chr3	89137322	89137322	G	A	ENSMUST00000047111.12	1	ENSMUSG00000041237	missense	D/N	67	Pklr	ENSMUST00000047111.12:c.199G>A	ENSMUSP00000035417.6:p.Asp67Asn	H-2-Kb	9	9	3	MANTFLEHL	MADTFLEHL	NetMHC	146.15	411.74	2.817	56	0.268	287.63	591.136	2.055	411.74	146.15	842.5	160.2	587.6381732	415.0591573	594.6343592	432.7628777	22-2_par	-0.071428571	0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.298	56	0	0	NA	3qF1	chr3-10012637-102854538	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	1	sgMsh2	cell line
chr3	58541123	58541123	GA	G	ENSMUST00000029387.14	1	ENSMUSG00000027810	FS	K/X	126	Eif2a	ENSMUST00000029387.14:c.382del	ENSMUSP00000029387.8:p.Met128CysfsTer110	H-2-Kb	9	48	0	INYICKKLM	NA	NetMHCpan	100.1	NA	NA	71	0.141	165.275	NA	NA	NA	157.07	NA	100.1	NA	174.2248102	NA	173.4802343	22-2_par	0.514285714	0.514285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.187	71	0	0	NA	3qD	chr3-10012637-102854538	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.840623861	sgMsh2	cell line
chr4	42851446	42851446	A	G	ENSMUST00000107979.1	3	ENSMUSG00000078721	missense	Y/H	237	Fam205a1	ENSMUST00000107979.1:c.709T>C	ENSMUSP00000103613.1:p.Tyr237His	H-2-Kb	9	7	5	SNLNHIQQL	SNLNYIQQL	NetMHCpan	153	44.2	0.289	194	0.067	168.13	93.094	0.554	25.08	157.92	44.2	153	183.7003569	229.1447967	141.9874632	178.3405083	22-2_par	-0.228571429	-0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.081	194	0	0	NA	4qA5	chr4-3554421-60070040	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.364120496	sgMsh2	cell line
chr4	57249987	57249987	A	G	ENSMUST00000075637.10	5	ENSMUSG00000038764	missense	Y/H	170	Ptpn3	ENSMUST00000075637.10:c.508T>C	ENSMUSP00000075063.4:p.Tyr170His	H-2-Kb	9	4	8	SSIHHPGHL	SSIHHPGYL	NetMHC	159.38	155.23	0.974	55	0.127	223.45	221.907	0.993	155.23	159.38	178.2	204.1	275.4926395	264.3078123	265.6134116	242.8007366	22-2_par	-0.471428571	-0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.125	55	0	0	NA	4qB3	chr4-3554421-60070040	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.561914346	sgMsh2	cell line
chr4	45399562	45399562	CA	C	ENSMUST00000116341.3	1	ENSMUSG00000045973	FS	F/X	192	Slc25a51	ENSMUST00000116341.3:c.576del	ENSMUSP00000112044.3:p.Phe192LeufsTer38	H-2-Kb	9	9	3	LFLAFEGPL	NA	NetMHC	175.77	NA	NA	56	0.143	262.884	NA	NA	NA	175.77	NA	446.7	NA	257.6973782	NA	268.0711022	22-2_par	0.957142857	1.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1429	56	0	0	NA	4qB1	chr4-3554421-60070040	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.64238048	sgMsh2	cell line
chr3	58541123	58541123	GA	G	ENSMUST00000029387.14	1	ENSMUSG00000027810	FS	K/X	126	Eif2a	ENSMUST00000029387.14:c.382del	ENSMUSP00000029387.8:p.Met128CysfsTer110	H-2-Kb	9	22	0	MMKLFVPGM	NA	NetMHCpan	264.1	NA	NA	71	0.141	319.977	NA	NA	NA	377.3	NA	264.1	NA	289.8077532	NA	350.1466697	22-2_par	0.971428571	1.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.187	71	0	0	NA	3qD	chr3-10012637-102854538	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.840623861	sgMsh2	cell line
chr4	108338459	108338459	A	G	ENSMUST00000131656.1	1	ENSMUSG00000048351	missense	K/R	195	Coa7	ENSMUST00000131656.1:c.584A>G	ENSMUSP00000114906.1:p.Lys195Arg	H-2-Kb	9	4	8	ANASRMYRL	ANASRMYKL	NetMHCpan	232	453.4	1.954	37	0.135	267.482	452.758	1.693	974.92	429.19	453.4	232	429.6452354	235.5645857	452.1161284	299.3987618	22-2_par	-0.514285714	-0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.192	37	0	0	NA	4qC7	chr4-60155018-112811814	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.863100435	sgMsh2	cell line
chr5	38674054	38674054	T	C	ENSMUST00000179555.7	2	ENSMUSG00000046572	missense	I/V	203	Zfp518b	ENSMUST00000179555.7:c.607A>G	ENSMUSP00000137381.1:p.Ile203Val	H-2-Db	9	9	3	GAVRNDYIV	GAIRNDYIV	NetMHC	45.3	21.85	0.482	127	0.094	176.044	80.848	0.459	21.85	45.3	30	83.2	142.1084819	301.037085	131.6952163	268.8871203	22-2_par	0.014285714	0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.104	127	0	0	NA	5qB3	chr5-37820990-87674558	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.467512736	sgMsh2	cell line
chr4	150192509	150192509	A	G	ENSMUST00000030817.4	1	ENSMUSG00000028972	missense	V/A	231	Car6	ENSMUST00000030817.4:c.692T>C	ENSMUSP00000030817.4:p.Val231Ala	H-2-Db	9	10	2	FALRDKVTL	FVLRDKVTL	NetMHC	48.09	1531.28	31.842	146	0.178	152.971	1344.696	8.791	1531.28	48.09	1182.7	97.7	1360.253963	212.6277776	1329.137772	208.2428026	22-2_par	-0.114285714	0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.189	146	0	0	NA	4qE2	chr4-147755683-156223608	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.84961449	sgMsh2	cell line
chr5	21831513	21831513	C	T	ENSMUST00000030878.7	1	ENSMUSG00000029015	missense	G/D	302	Slc26a5	ENSMUST00000030878.7:c.905G>A	ENSMUSP00000030878.1:p.Gly302Asp	H-2-Db	9	4	8	FAVVMGTDI	FAVVMGTGI	NetMHC	51.6	358.71	6.952	207	0.024	175.741	435.569	2.478	358.71	51.6	566.9	230.6	504.219921	205.4092515	366.91883	146.0730172	22-2_par	1.457142857	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.024	207	0	0	NA	5qA3	chr5-3344479-30195284	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.107887554	sgMsh2	cell line
chr5	45507181	45507181	G	T	ENSMUST00000046122.10	1	ENSMUSG00000039682	missense	K/N	384	Lap3	ENSMUST00000046122.10:c.1152G>T	ENSMUSP00000040222.6:p.Lys384Asn	H-2-Db	9	11	1	NVIINAATL	KVIINAATL	NetMHCpan	71.1	35.1	0.494	322	0.012	98.871	70.768	0.716	45.68	75.95	35.1	71.1	95.85615401	121.7923471	97.62701259	134.762792	22-2_par	1.742857143	1.8	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Vardict	2	0.022	322	0	0	NA	5qB3	chr5-37820990-87674558	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.098896925	sgMsh2	cell line
chr4	144674698	144674698	A	C	ENSMUST00000105747.1	5	ENSMUSG00000078505	missense	I/S	72	Aadacl4fm4	ENSMUST00000105747.1:c.215T>G	ENSMUSP00000101373.1:p.Ile72Ser	H-2-Db	9	10	2	FSIFMHDLV	FIIFMHDLV	NetMHCpan	115.1	2478.2	21.531	61	0.066	248.322	2679.855	10.792	3640.19	147.85	2478.2	115.1	2881.50913	387.8108898	2320.438166	348.7947987	22-2_par	1.5	1.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.085	61	0	0	NA	4qE1	chr4-114231334-147618793	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.382101755	sgMsh2	cell line
chr4	152034636	152034636	G	T	ENSMUST00000030792.1	1	ENSMUSG00000028950	missense	L/M	159	Tas1r1	ENSMUST00000030792.1:c.475C>A	ENSMUSP00000030792.1:p.Leu159Met	H-2-Db	9	9	3	AAMLSPFLM	AALLSPFLM	NetMHCpan	202.5	430.9	2.128	49	0.082	292.363	355.008	1.214	422.56	370.57	430.9	202.5	244.1293529	269.537999	287.4550879	315.1882363	22-2_par	1.685714286	1.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.095	49	0	0	NA	4qE2	chr4-147755683-156223608	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.427054903	sgMsh2	cell line
chr5	120851583	120851583	T	A	ENSMUST00000057814.4	1	ENSMUSG00000053765	missense	F/Y	195	Oas1f	ENSMUST00000057814.4:c.584T>A	ENSMUSP00000056993.4:p.Phe195Tyr	H-2-Kb	8	7	5	FSICYTDL	FSICFTDL	NetMHC	53.3	38.76	0.727	250	0.048	82.805	67.188	0.811	38.76	53.3	60.8	75.3	73.57664827	90.31086459	77.57825382	95.22259222	22-2_par	0.642857143	0.642857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.053	250	0	0	NA	5qF	chr5-88384592-151647482	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.238251683	sgMsh2	cell line
chr5	87254458	87254458	T	C	ENSMUST00000075858.3	1	ENSMUSG00000057425	missense	T/A	105	Ugt2b37	ENSMUST00000075858.3:c.313A>G	ENSMUSP00000075255.3:p.Thr105Ala	H-2-Kb	8	11	1	ACLSYSPL	TCLSYSPL	NetMHC	60.74	53.98	0.889	150	0.053	89.018	70.282	0.79	53.98	60.74	106.2	116.2	83.31822323	105.1332282	57.24532166	72.90209351	22-2_par	0.8	0.8	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.058	150	0	0	NA	5qE1	chr5-37820990-87674558	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.260728256	sgMsh2	cell line
chr5	33414869	33414869	A	T	ENSMUST00000087864.11	1	ENSMUSG00000037355	missense	Q/L	711	Uvssa	ENSMUST00000087864.11:c.2132A>T	ENSMUSP00000085170.5:p.Gln711Leu	H-2-Kb	8	13	3	ANLFNYAL	ANQFNYAL	NetMHC	120.65	495.41	4.106	229	0.044	310.043	851.547	2.747	495.41	120.65	531.6	130.6	1171.493815	489.4856902	1628.32091	600.8139392	22-2_par	0.557142857	0.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.052	229	0	0	NA	5qB1	chr5-30195285-37739562	7	5	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.233756368	sgMsh2	cell line
chr5	61809301	61809301	C	A	ENSMUST00000053876.4	NA	ENSMUSG00000089992	missense	L/M	140	G6pd2	ENSMUST00000053876.4:c.418C>A	ENSMUSP00000131163.1:p.Leu140Met	H-2-Kb	8	6	6	NHLFYMAL	NHLFYLAL	NetMHCpan	127.4	194.2	1.524	222	0.05	198.63	406.08	2.044	635.82	178.11	194.2	127.4	359.5340277	219.1492557	452.6265239	296.9887511	22-2_par	1.371428571	1.371428571	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Vardict	2	0.058	222	0	0	NA	5qC3.1	chr5-37820990-87674558	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.260728256	sgMsh2	cell line
chr4	144674698	144674698	A	C	ENSMUST00000105747.1	5	ENSMUSG00000078505	missense	I/S	72	Aadacl4fm4	ENSMUST00000105747.1:c.215T>G	ENSMUSP00000101373.1:p.Ile72Ser	H-2-Kb	8	11	1	SIFMHDLV	IIFMHDLV	NetMHC	202.55	105.77	0.522	61	0.066	227.037	120.955	0.533	105.77	202.55	121.2	226.7	120.7090967	227.3735801	130.5389154	273.9933359	22-2_par	1.5	1.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.085	61	0	0	NA	4qE1	chr4-114231334-147618793	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.382101755	sgMsh2	cell line
chr5	33414869	33414869	A	T	ENSMUST00000087864.11	1	ENSMUSG00000037355	missense	Q/L	711	Uvssa	ENSMUST00000087864.11:c.2132A>T	ENSMUSP00000085170.5:p.Gln711Leu	H-2-Kb	8	8	8	KHEKFANL	KHEKFANQ	SMMPMBEC	91.99	1654.779	17.989	229	0.044	178.549	12044.8	67.459	22330.41	241.29	19425.8	425.2	4663.80088	115.8083836	1654.778997	91.98986892	22-2_par	-0.814285714	-0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.052	229	0	0	NA	5qB1	chr5-30195285-37739562	7	5	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.233756368	sgMsh2	cell line
chr5	143928265	143928265	A	G	ENSMUST00000148011.7	1	ENSMUSG00000079109	missense	T/A	722	Pms2	ENSMUST00000148011.7:c.2164A>G	ENSMUSP00000119875.1:p.Thr722Ala	H-2-Kb	8	10	2	IAPQTLNL	ITPQTLNL	NetMHC	287.69	296.79	1.032	81	0.037	355.826	270.493	0.76	296.79	287.69	441.1	368.3	222.1979255	343.3523309	244.1968177	386.1357391	22-2_par	0.014285714	0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.061	81	0	0	NA	5qG2	chr5-88384592-151647482	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.274214201	sgMsh2	cell line
chr5	140631570	140631570	G	A	ENSMUST00000042661.7	1	ENSMUSG00000036565	missense	H/Y	315	Ttyh3	ENSMUST00000042661.7:c.943C>T	ENSMUSP00000037447.3:p.His315Tyr	H-2-Kb	8	7	5	LSGSYKAL	LSGSHKAL	SMMPMBEC	170.899	739.163	4.325	76	0.066	288.814	2731.163	9.456	4536.05	338.44	5404.7	685.5	926.2751223	239.1883374	739.1626265	170.8991883	22-2_par	-0.228571429	-0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.082	76	0	0	NA	5qG2	chr5-88384592-151647482	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.368615811	sgMsh2	cell line
chr5	30920696	30920696	T	C	ENSMUST00000031055.7	1	ENSMUSG00000029163	missense	V/A	933	Emilin1	ENSMUST00000031055.7:c.2798T>C	ENSMUSP00000031055.5:p.Val933Ala	H-2-Kb	8	10	2	AALSRSNL	AVLSRSNL	NetMHC	364.06	412.58	1.133	148	0.081	455.479	425.424	0.934	412.58	364.06	387.5	437	490.6140712	482.7696948	438.2682402	473.9581548	22-2_par	-0.028571429	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.073	148	0	0	NA	5qB1	chr5-30195285-37739562	7	5	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.328157978	sgMsh2	cell line
chr5	14855644	14855644	A	G	ENSMUST00000030691.16	5	ENSMUSG00000061601	missense	T/A	4963	Pclo	ENSMUST00000030691.16:c.14887A>G	ENSMUSP00000030691.9:p.Thr4963Ala	H-2-Kb	8	10	2	IAYKFKSP	ITYKFKSP	SMMPMBEC	141.495	89.483	0.632	74	0.081	293.559	286.945	0.977	498.52	444.97	481.9	517.6	91.98986892	142.1477533	89.4828896	141.4946437	22-2_par	-0.985714286	-0.114285714	FALSE	FALSE	TRUE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.104	74	0	0	NA	5qA1	chr5-3344479-30195284	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.467512736	sgMsh2	cell line
chr4	136006195	136006195	C	A	ENSMUST00000030427.5	1	ENSMUSG00000028668	missense	D/Y	746	Eloa	ENSMUST00000030427.5:c.2236G>T	ENSMUSP00000030427.5:p.Asp746Tyr	H-2-Kb	8	6	6	SSVSYYPR	SSVSYDPR	SMM	229.477	717.365	3.126	20	0.35	413.217	3171.342	7.675	5226.49	482.29	13052.1	1745.3	717.3646964	229.4774419	1116.194813	344.1438398	22-2_par	-0.871428571	-0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.332	20	0	0	NA	4qD3	chr4-114231334-147618793	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	2	1	sgMsh2	cell line
chr5	61809301	61809301	C	A	ENSMUST00000053876.4	NA	ENSMUSG00000089992	missense	L/M	140	G6pd2	ENSMUST00000053876.4:c.418C>A	ENSMUSP00000131163.1:p.Leu140Met	H-2-Kb	9	5	7	ANHLFYMAL	ANHLFYLAL	NetMHCpan	6.9	9.7	1.406	222	0.05	23.909	29.901	1.251	16.64	7.35	9.7	6.9	43.16283877	40.46783774	52.02954165	51.31566957	22-2_par	1.371428571	1.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.058	222	0	0	NA	5qC3.1	chr5-37820990-87674558	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.260728256	sgMsh2	cell line
chr5	145986842	145986842	GT	G	ENSMUST00000068317.12	1	ENSMUSG00000029630	FS	K/X	330	Cyp3a25	ENSMUST00000068317.12:c.990del	ENSMUSP00000065585.6:p.Lys330AsnfsTer21	H-2-Kb	9	8	4	VQKNFRMRL	NA	NetMHC	89.9	NA	NA	241	0.116	315.881	NA	NA	NA	89.9	NA	199	NA	496.7181164	NA	432.7628777	22-2_par	-1.128571429	-0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1162	241	0	0	NA	5qG2	chr5-88384592-151647482	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.522355576	sgMsh2	cell line
chr5	14855644	14855644	A	G	ENSMUST00000030691.16	5	ENSMUSG00000061601	missense	T/A	4963	Pclo	ENSMUST00000030691.16:c.14887A>G	ENSMUSP00000030691.9:p.Thr4963Ala	H-2-Kb	9	10	2	IAYKFKSPD	ITYKFKSPD	SMM	98.426	135.553	1.377	74	0.081	227.519	294.323	1.294	447.31	345.58	1023.1	916	135.5532704	98.4260372	141.3350901	109.4586279	22-2_par	-1.742857143	-0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.104	74	0	0	NA	5qA1	chr5-3344479-30195284	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.467512736	sgMsh2	cell line
chr4	136006195	136006195	C	A	ENSMUST00000030427.5	1	ENSMUSG00000028668	missense	D/Y	746	Eloa	ENSMUST00000030427.5:c.2236G>T	ENSMUSP00000030427.5:p.Asp746Tyr	H-2-Kb	9	6	6	SSVSYYPRK	SSVSYDPRK	SMM	405.611	2612.823	6.442	20	0.35	428.44	6531.942	15.246	10451.06	434.94	15416	2509.1	2612.823058	405.6112574	2607.654204	421.9393213	22-2_par	-1.314285714	-0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.332	20	0	0	NA	4qD3	chr4-114231334-147618793	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	2	1	sgMsh2	cell line
chr4	136006195	136006195	C	A	ENSMUST00000030427.5	1	ENSMUSG00000028668	missense	D/Y	746	Eloa	ENSMUST00000030427.5:c.2236G>T	ENSMUSP00000030427.5:p.Asp746Tyr	H-2-Kb	9	9	3	SYYPRKPAV	SYDPRKPAV	SMM	240.497	3342.797	13.9	20	0.35	385.833	6709.413	17.389	9884.96	483.76	11758.6	634	3342.796971	240.4971865	3533.865369	287.9055255	22-2_par	-0.985714286	-0.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.332	20	0	0	NA	4qD3	chr4-114231334-147618793	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	2	1	sgMsh2	cell line
chr6	29206361	29206361	G	T	ENSMUST00000159124.7	1	ENSMUSG00000003500	missense	T/N	159	Impdh1	ENSMUST00000159124.7:c.476C>A	ENSMUSP00000124931.1:p.Thr159Asn	H-2-Db	9	7	5	VGIVNSRDI	VGIVTSRDI	SMM	273.288	13262.335	48.529	67	0.045	331.682	13333.218	40.199	25076.93	433.02	13404.1	379.2	13262.33519	273.2876461	12432.83013	284.1646167	22-2_par	0.128571429	0.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.077	67	0	0	NA	6qA3.3	chr6-3373003-51458746	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.346139237	sgMsh2	cell line
chr6	39355107	39355107	T	C	ENSMUST00000090243.7	1	ENSMUSG00000029924	missense	T/A	131	Slc37a3	ENSMUST00000090243.7:c.391A>G	ENSMUSP00000087709.4:p.Thr131Ala	H-2-Kb	8	5	7	VVFVFGAL	VVFVFGTL	SMMPMBEC	2.041	3.212	1.574	87	0.046	2.306	3.356	1.455	2.83	2.48	3.5	3.8	3.546010359	2.131768301	3.211737185	2.040515979	22-2_par	2.742857143	2.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.062	87	0	0	NA	6qB1	chr6-3373003-51458746	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.278709515	sgMsh2	cell line
chr6	123839752	123839752	A	G	ENSMUST00000162046.2	1	ENSMUSG00000094672	missense	F/S	290	Vmn2r25	ENSMUST00000162046.2:c.869T>C	ENSMUSP00000124342.1:p.Phe290Ser	H-2-Kb	8	10	2	YSVIFYNL	YFVIFYNL	NetMHC	6.36	57.96	9.113	76	0.197	13.843	53.342	3.853	57.96	6.36	312.2	11.1	38.70258739	16.58593656	48.72367077	18.22804114	22-2_par	1.385714286	1.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	76	0	0	NA	6qF2	chr6-70356034-129638907	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.899062953	sgMsh2	cell line
chr6	43283927	43283927	T	C	ENSMUST00000031750.13	5	ENSMUSG00000033542	missense	F/L	1429	Arhgef5	ENSMUST00000031750.13:c.4285T>C	ENSMUSP00000031750.6:p.Phe1429Leu	H-2-Kb	8	4	8	LVFDHAPL	LVFDHAPF	NetMHC	11.63	188.39	16.199	53	0.113	19.735	227.152	11.51	188.39	11.63	91.8	18.3	374.7485835	23.05366617	265.9132635	21.17093311	22-2_par	0.614285714	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.119	53	0	0	NA	6qB2.1	chr6-3373003-51458746	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.534942457	sgMsh2	cell line
chr6	123839752	123839752	A	G	ENSMUST00000162046.2	1	ENSMUSG00000094672	missense	F/S	290	Vmn2r25	ENSMUST00000162046.2:c.869T>C	ENSMUSP00000124342.1:p.Phe290Ser	H-2-Kb	8	11	1	SVIFYNLL	FVIFYNLL	NetMHCpan	13.1	76.5	5.84	76	0.197	39.915	106.281	2.663	110.53	23.5	76.5	13.1	102.0328459	56.33003227	110.8510982	64.08258172	22-2_par	2.042857143	2.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	76	0	0	NA	6qF2	chr6-70356034-129638907	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.899062953	sgMsh2	cell line
chr7	4145479	4145479	T	C	ENSMUST00000037472.12	1	ENSMUSG00000035545	missense	V/A	750	Leng8	ENSMUST00000037472.12:c.2249T>C	ENSMUSP00000046465.6:p.Val750Ala	H-2-Kb	8	6	6	MIKTYAAL	MIKTYVAL	NetMHC	24.02	191.99	7.993	44	0.25	29.496	119.925	4.066	191.99	24.02	154	95.7	84.47729517	29.22402293	85.8499408	29.76733808	22-2_par	0.857142857	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.289	44	0	0	NA	7qA1	chr7-3896664-7552161	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	1	sgMsh2	cell line
chr6	132847999	132847999	A	G	ENSMUST00000071696.1	NA	ENSMUSG00000057381	missense	I/M	286	Tas2r123	ENSMUST00000071696.1:c.858A>G	ENSMUSP00000071615.1:p.Ile286Met	H-2-Kb	8	8	4	VILMFDHI	VILIFDHI	NetMHC	29.73	43.82	1.474	220	0.073	69.957	81.641	1.167	43.82	29.73	67.4	47.5	95.8826437	104.6501849	105.1332282	92.41447486	22-2_par	1.542857143	1.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.068	220	0	0	NA	6qG1	chr6-132626356-148425959	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.305681404	sgMsh2	cell line
chr7	23929013	23929013	A	G	ENSMUST00000049819.3	NA	ENSMUSG00000046924	missense	T/A	210	Vmn1r179	ENSMUST00000049819.3:c.628A>G	ENSMUSP00000055372.3:p.Thr210Ala	H-2-Kb	8	6	6	IAYDAAFM	IAYDATFM	NetMHC	38.25	177.22	4.633	317	0.114	71.301	220.348	3.09	177.22	38.25	117.3	50.4	263.475356	92.20192747	334.7649647	114.746646	22-2_par	0.757142857	1.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.102	317	0	0	NA	7qA3	chr7-8367627-25950707	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.458522106	sgMsh2	cell line
chr7	11881114	11881114	A	G	ENSMUST00000226622.1	NA	ENSMUSG00000043308	missense	T/A	258	Vmn1r75	ENSMUST00000226622.1:c.772A>G	ENSMUSP00000154540.1:p.Thr258Ala	H-2-Kb	8	11	1	ATYSKYPM	TTYSKYPM	NetMHCpan	34.9	35.5	1.017	219	0.059	214.949	171.982	0.8	46.29	50.81	35.5	34.9	313.8629122	396.0408646	297.6733808	379.0879676	22-2_par	-1.1	-1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.053	219	0	0	NA	7qA1	chr7-8367627-25950707	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.238251683	sgMsh2	cell line
chr6	30812791	30812791	A	G	ENSMUST00000048774.12	1	ENSMUSG00000025607	missense	V/A	534	Copg2	ENSMUST00000048774.12:c.1601T>C	ENSMUSP00000038368.6:p.Val534Ala	H-2-Kb	8	5	7	ATFYLNAL	ATFYLNVL	NetMHCpan	35	88.3	2.523	221	0.195	75.461	225.39	2.987	324.03	58.08	88.3	35	218.6452264	92.84104069	232.1346655	103.2143305	22-2_par	0.957142857	0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.188	221	0	0	NA	6qA3.3	chr6-3373003-51458746	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.845119176	sgMsh2	cell line
chr6	34167638	34167638	A	G	ENSMUST00000019143.8	1	ENSMUSG00000018999	missense	M/T	94	Slc35b4	ENSMUST00000019143.8:c.281T>C	ENSMUSP00000019143.8:p.Met94Thr	H-2-Kb	8	11	1	TIFRSGSL	MIFRSGSL	SMM	78.116	55.814	0.714	244	0.061	80.684	60.724	0.753	57.07	79.57	81.2	101.7	55.81359543	78.11600059	64.37837347	81.79749427	22-2_par	0.657142857	0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.074	244	0	0	NA	6qA3.3	chr6-3373003-51458746	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.332653293	sgMsh2	cell line
chr6	55100726	55100726	T	C	ENSMUST00000212633.1	1	ENSMUSG00000003476	missense	N/S	218	Crhr2	ENSMUST00000212633.1:c.653A>G	ENSMUSP00000148408.1:p.Asn218Ser	H-2-Kb	8	10	2	TSFFWMFV	TNFFWMFV	SMM	47.178	87.245	1.849	83	0.072	51.103	93.134	1.823	155.21	79.62	50.6	54.7	87.24489012	47.17805149	99.0238939	47.50507412	22-2_par	1.828571429	1.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.081	83	0	0	NA	6qB3	chr6-51482144-70356033	4	3	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.364120496	sgMsh2	cell line
chr6	58435233	58435233	G	T	ENSMUST00000228577.1	NA	ENSMUSG00000095670	missense	H/N	205	Vmn1r30	ENSMUST00000228577.1:c.613C>A	ENSMUSP00000153898.1:p.His205Asn	H-2-Kb	8	5	7	VIILFRNQ	VIILFRHQ	SMMPMBEC	64.378	103.452	1.607	324	0.086	163.772	293.907	1.795	360.44	202.88	4149.8	4109.9	227.3735801	124.6636964	103.4522641	64.37837347	22-2_par	0.585714286	1.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.094	324	0	0	NA	6qB3	chr6-51482144-70356033	4	3	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.422559588	sgMsh2	cell line
chr7	3704703	3704703	A	G	ENSMUST00000108625.7	2	ENSMUSG00000006333	missense	K/R	52	Rps9	ENSMUST00000108625.7:c.155A>G	ENSMUSP00000104265.1:p.Lys52Arg	H-2-Kb	8	5	7	VKFTLARI	VKFTLAKI	SMMPMBEC	126.398	345.732	2.735	41	0.171	190.196	554.964	2.918	712.06	241.16	790	397.8	397.8689062	139.2323008	345.7323355	126.3979412	22-2_par	0.542857143	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.21	41	0	0	NA	7qA1	chr7-3489139-3717007	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.944016101	sgMsh2	cell line
chr6	113495618	113495618	A	G	ENSMUST00000204268.2	1	ENSMUSG00000045009	missense	L/P	531	Prrt3	ENSMUST00000204268.2:c.1592T>C	ENSMUSP00000145443.1:p.Leu531Pro	H-2-Kb	8	7	5	AGLVPYNL	AGLVLYNL	SMM	428.292	170.114	0.397	77	0.052	488.667	165.257	0.338	125.13	464.78	160.4	513.9	170.1139779	428.2920371	180.1938647	512.5544401	22-2_par	0.714285714	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.06	77	0	0	NA	6qE3	chr6-70356034-129638907	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.269718886	sgMsh2	cell line
chr6	55100726	55100726	T	C	ENSMUST00000212633.1	1	ENSMUSG00000003476	missense	N/S	218	Crhr2	ENSMUST00000212633.1:c.653A>G	ENSMUSP00000148408.1:p.Asn218Ser	H-2-Kb	8	8	4	VVTSFFWM	VVTNFFWM	NetMHCpan	266.9	268.3	1.005	83	0.072	342.55	366.563	1.07	814.63	943.23	268.3	266.9	337.0854446	326.3923717	396.0408646	358.7071224	22-2_par	1.328571429	1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.081	83	0	0	NA	6qB3	chr6-51482144-70356033	4	3	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.364120496	sgMsh2	cell line
chr6	123839752	123839752	A	G	ENSMUST00000162046.2	1	ENSMUSG00000094672	missense	F/S	290	Vmn2r25	ENSMUST00000162046.2:c.869T>C	ENSMUSP00000124342.1:p.Phe290Ser	H-2-Kb	9	10	2	YSVIFYNLL	YFVIFYNLL	NetMHC	8.05	71.05	8.826	76	0.197	31.095	89.341	2.873	71.05	8.05	548.9	20.3	77.46579817	41.88996524	101.2161934	50.37905305	22-2_par	2.042857143	2.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	76	0	0	NA	6qF2	chr6-70356034-129638907	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.899062953	sgMsh2	cell line
chr7	11881114	11881114	A	G	ENSMUST00000226622.1	NA	ENSMUSG00000043308	missense	T/A	258	Vmn1r75	ENSMUST00000226622.1:c.772A>G	ENSMUSP00000154540.1:p.Thr258Ala	H-2-Kb	9	11	1	ATYSKYPML	TTYSKYPML	NetMHC	8.76	8.64	0.986	219	0.059	14.76	12.736	0.863	8.64	8.76	7.8	9.7	16.8310031	19.82028979	18.76074152	23.61837425	22-2_par	-0.457142857	-0.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.053	219	0	0	NA	7qA1	chr7-8367627-25950707	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.238251683	sgMsh2	cell line
chr7	4145479	4145479	T	C	ENSMUST00000037472.12	1	ENSMUSG00000035545	missense	V/A	750	Leng8	ENSMUST00000037472.12:c.2249T>C	ENSMUSP00000046465.6:p.Val750Ala	H-2-Kb	9	5	7	AMIKTYAAL	AMIKTYVAL	NetMHC	17.57	85.11	4.844	44	0.25	67.213	112.663	1.676	85.11	17.57	101.7	48.7	123.6260519	85.7254947	142.3147781	105.0146768	22-2_par	0.857142857	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.289	44	0	0	NA	7qA1	chr7-3896664-7552161	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	1	sgMsh2	cell line
chr6	116626910	116626910	A	T	ENSMUST00000079749.5	1	ENSMUSG00000059878	missense	L/M	43	Zfp422	ENSMUST00000079749.5:c.127T>A	ENSMUSP00000078685.5:p.Leu43Met	H-2-Kb	9	3	9	VAIRFDSGM	VAIRFDSGL	NetMHC	18.86	9.5	0.504	84	0.06	86.012	56.099	0.652	9.5	18.86	29	62.6	83.19744705	109.4233483	102.1527353	138.4363053	22-2_par	-6.34E-17	0.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.083	84	0	0	NA	6qE3	chr6-70356034-129638907	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.373111125	sgMsh2	cell line
chr7	80743127	80743127	T	C	ENSMUST00000167377.2	1	ENSMUSG00000030536	missense	Y/C	696	Iqgap1	ENSMUST00000167377.2:c.2087A>G	ENSMUSP00000128278.1:p.Tyr696Cys	H-2-Kb	9	7	5	GGYHCYHNL	GGYHYYHNL	NetMHCpan	49.1	6.3	0.128	53	0.075	132.474	34.424	0.26	8	68.95	6.3	49.1	68.88267433	230.7331526	60.84851727	195.99726	22-2_par	-0.885714286	-0.885714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.095	53	0	0	NA	7qD3	chr7-26198811-104249043	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.427054903	sgMsh2	cell line
chr7	19164066	19164066	G	C	ENSMUST00000094790.4	5	ENSMUSG00000030406	missense	C/W	80	Gipr	ENSMUST00000094790.4:c.240C>G	ENSMUSP00000092384.3:p.Cys80Trp	H-2-Kb	9	9	3	VSWPWYLPW	VSCPWYLPW	SMMPMBEC	74.516	177.93	2.388	48	0.125	100.601	449.521	4.468	501.75	78.71	1581.5	353	397.2921646	122.4926415	177.9303365	74.51607995	22-2_par	-0.485714286	0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.143	48	0	0	NA	7qA3	chr7-8367627-25950707	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.642830011	sgMsh2	cell line
chr6	39355107	39355107	T	C	ENSMUST00000090243.7	1	ENSMUSG00000029924	missense	T/A	131	Slc37a3	ENSMUST00000090243.7:c.391A>G	ENSMUSP00000087709.4:p.Thr131Ala	H-2-Kb	9	5	7	VVFVFGALT	VVFVFGTLT	NetMHC	125.41	299.9	2.391	87	0.046	163.94	269.135	1.642	299.9	125.41	424.7	260.9	204.225515	152.7953016	238.3691237	175.0854271	22-2_par	2.042857143	2.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.062	87	0	0	NA	6qB1	chr6-3373003-51458746	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.278709515	sgMsh2	cell line
chr6	132847999	132847999	A	G	ENSMUST00000071696.1	NA	ENSMUSG00000057381	missense	I/M	286	Tas2r123	ENSMUST00000071696.1:c.858A>G	ENSMUSP00000071615.1:p.Ile286Met	H-2-Kb	9	7	5	IVILMFDHI	IVILIFDHI	NetMHCpan	127.5	266.5	2.09	220	0.073	188.972	508.594	2.691	440.09	130.06	266.5	127.5	670.0543022	255.3347944	577.0985724	247.8848587	22-2_par	1.542857143	2.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.068	220	0	0	NA	6qG1	chr6-132626356-148425959	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.305681404	sgMsh2	cell line
chr6	73087599	73087599	T	C	ENSMUST00000064948.12	5	ENSMUSG00000052861	missense	N/D	2667	Dnah6	ENSMUST00000064948.12:c.7999A>G	ENSMUSP00000068758.6:p.Asn2667Asp	H-2-Kb	9	4	8	TSYLELIDL	TSYLELINL	NetMHC	169.08	29.72	0.176	265	0.034	195.083	61.858	0.317	29.72	169.08	27.9	200.7	93.99613579	197.7470439	113.3052413	192.4199068	22-2_par	1.085714286	1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.039	265	0	0	NA	6qC1	chr6-70356034-129638907	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.175317276	sgMsh2	cell line
chr6	17571467	17571467	A	T	ENSMUST00000115443.7	5	ENSMUSG00000009376	missense	Q/H	1296	Met	ENSMUST00000115443.7:c.3888A>T	ENSMUSP00000111103.1:p.Gln1296His	H-2-Kb	9	7	5	IYLLHGRRL	IYLLQGRRL	NetMHC	250.2	760.7	3.04	81	0.037	424.956	1192.213	2.805	760.7	250.2	1110.6	442.7	1273.82568	436.6264089	1362.228619	413.2853397	22-2_par	-0.171428571	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.064	81	0	0	NA	6qA2	chr6-3373003-51458746	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.287700145	sgMsh2	cell line
chr7	51556243	51556243	A	G	ENSMUST00000043944.5	1	ENSMUSG00000055489	missense	Y/C	275	Ano5	ENSMUST00000043944.5:c.824A>G	ENSMUSP00000046884.5:p.Tyr275Cys	H-2-Kb	9	8	4	SYFCKEQPF	SYFYKEQPF	SMM	179.519	129.751	0.723	50	0.06	237.709	169.48	0.713	171.37	264.92	629	858.8	129.7507868	179.5188262	167.5907328	210.4989821	22-2_par	-0.628571429	-0.628571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.1	50	0	0	NA	7qB4	chr7-26198811-104249043	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.449531476	sgMsh2	cell line
chr6	55100726	55100726	T	C	ENSMUST00000212633.1	1	ENSMUSG00000003476	missense	N/S	218	Crhr2	ENSMUST00000212633.1:c.653A>G	ENSMUSP00000148408.1:p.Asn218Ser	H-2-Kb	9	9	3	VTSFFWMFV	VTNFFWMFV	NetMHCpan	319.3	311.8	0.977	83	0.072	387.339	270.533	0.698	251.68	382.71	311.8	319.3	274.2268658	419.8653158	266.8394274	391.9674468	22-2_par	1.828571429	1.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.081	83	0	0	NA	6qB3	chr6-51482144-70356033	4	3	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.364120496	sgMsh2	cell line
chr6	30812791	30812791	A	G	ENSMUST00000048774.12	1	ENSMUSG00000025607	missense	V/A	534	Copg2	ENSMUST00000048774.12:c.1601T>C	ENSMUSP00000038368.6:p.Val534Ala	H-2-Kb	9	4	8	RATFYLNAL	RATFYLNVL	NetMHCpan	311.5	719	2.308	221	0.195	464.304	738.212	1.59	1534.39	406.08	719	311.5	736.3935909	522.5285205	740.0311486	597.3790667	22-2_par	0.957142857	0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.188	221	0	0	NA	6qA3.3	chr6-3373003-51458746	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.845119176	sgMsh2	cell line
chr6	113495618	113495618	A	G	ENSMUST00000204268.2	1	ENSMUSG00000045009	missense	L/P	531	Prrt3	ENSMUST00000204268.2:c.1592T>C	ENSMUSP00000145443.1:p.Leu531Pro	H-2-Kb	9	10	2	VPYNLPFPL	VLYNLPFPL	SMM	483.181	231.265	0.479	77	0.052	493.275	196.603	0.399	161.94	496.55	55.2	490	231.2650474	483.1811688	240.0214196	602.9065471	22-2_par	0.342857143	0.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.06	77	0	0	NA	6qE3	chr6-70356034-129638907	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.269718886	sgMsh2	cell line
chr7	19164066	19164066	G	C	ENSMUST00000094790.4	5	ENSMUSG00000030406	missense	C/W	80	Gipr	ENSMUST00000094790.4:c.240C>G	ENSMUSP00000092384.3:p.Cys80Trp	H-2-Kb	9	10	2	SWPWYLPWF	SCPWYLPWF	SMM	180.347	1057.085	5.861	48	0.125	452.233	1521.943	3.365	2971.92	557.53	1986.8	1506.7	1057.085218	180.3474475	933.7916798	346.9365057	22-2_par	0.042857143	0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.143	48	0	0	NA	7qA3	chr7-8367627-25950707	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.642830011	sgMsh2	cell line
chr6	55100726	55100726	T	C	ENSMUST00000212633.1	1	ENSMUSG00000003476	missense	N/S	218	Crhr2	ENSMUST00000212633.1:c.653A>G	ENSMUSP00000148408.1:p.Asn218Ser	H-2-Kb	9	8	4	VVTSFFWMF	VVTNFFWMF	SMM	122.775	174.626	1.422	83	0.072	395.411	335.095	0.847	494.7	621.68	730.6	829.2	174.6264398	122.7750162	175.4890407	169.1414308	22-2_par	1.128571429	1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.081	83	0	0	NA	6qB3	chr6-51482144-70356033	4	3	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.364120496	sgMsh2	cell line
chr7	108622672	108622672	A	T	ENSMUST00000080014.1	NA	ENSMUSG00000061000	missense	I/F	287	Olfr507	ENSMUST00000080014.1:c.859A>T	ENSMUSP00000078926.1:p.Ile287Phe	H-2-Db	9	5	7	YMIAIAFPM	YMIAIAIPM	NetMHCpan	110.2	177.9	1.614	165	0.115	150.554	199.508	1.325	170.17	151.96	177.9	110.2	221.1159138	149.1488812	284.1646167	186.4532681	22-2_par	2.242857143	2.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.122	165	0	0	NA	7qE3	chr7-104330969-145323643	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.548428401	sgMsh2	cell line
chr7	108622672	108622672	A	T	ENSMUST00000080014.1	NA	ENSMUSG00000061000	missense	I/F	287	Olfr507	ENSMUST00000080014.1:c.859A>T	ENSMUSP00000078926.1:p.Ile287Phe	H-2-Db	9	9	3	IAFPMLNPL	IAIPMLNPL	NetMHCpan	277.9	109.6	0.394	165	0.115	482.312	224.629	0.466	259.73	683.48	109.6	277.9	242.4487783	545.2805415	206.8092692	419.3435814	22-2_par	0.8	1.385714286	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.122	165	0	0	NA	7qE3	chr7-104330969-145323643	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.548428401	sgMsh2	cell line
chr8	79178979	79178979	A	G	ENSMUST00000098614.8	1	ENSMUSG00000071064	missense	T/A	862	Zfp827	ENSMUST00000098614.8:c.2584A>G	ENSMUSP00000096214.2:p.Thr862Ala	H-2-Db	9	3	9	RANLNQHLA	RANLNQHLT	SMM	183.916	495.017	2.692	143	0.077	471.736	1498.718	3.177	2502.42	735.23	2919.3	971.4	495.0168702	183.9162063	367.7646653	208.2428026	22-2_par	-0.614285714	-0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.084	143	0	0	NA	8qC1	chr8-19751908-129027034	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.37760644	sgMsh2	cell line
chr8	82990512	82990512	T	C	ENSMUST00000078525.6	1	ENSMUSG00000047747	missense	I/T	216	Rnf150	ENSMUST00000078525.6:c.647T>C	ENSMUSP00000077610.5:p.Ile216Thr	H-2-Kb	8	6	6	VSISFTVL	VSISFIVL	NetMHC	4.72	7.92	1.678	69	0.13	8.036	9.904	1.233	7.92	4.72	8.8	6.1	11.00880046	9.971029474	11.85059074	10.32143305	22-2_par	1.857142857	1.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.167	69	0	0	NA	8qC2	chr8-19751908-129027034	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.750717566	sgMsh2	cell line
chr7	108622672	108622672	A	T	ENSMUST00000080014.1	NA	ENSMUSG00000061000	missense	I/F	287	Olfr507	ENSMUST00000080014.1:c.859A>T	ENSMUSP00000078926.1:p.Ile287Phe	H-2-Kb	8	7	5	IAIAFPML	IAIAIPML	NetMHC	5.58	314.08	56.287	165	0.115	13.535	415.689	30.712	314.08	5.58	186.6	8.8	576.4212727	18.27006111	517.2970479	20.68902384	22-2_par	2.142857143	2.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.122	165	0	0	NA	7qE3	chr7-104330969-145323643	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.548428401	sgMsh2	cell line
chr8	44952187	44952187	A	T	ENSMUST00000191428.6	5	ENSMUSG00000070047	missense	L/F	658	Fat1	ENSMUST00000191428.6:c.1974A>T	ENSMUSP00000140596.1:p.Leu658Phe	H-2-Kb	8	8	4	ATPFYINL	ATPLYINL	NetMHCpan	14.4	21.5	1.493	84	0.262	26.098	27.335	1.047	8.81	14.98	21.5	14.4	33.16958211	37.21688324	38.88123042	46.74552051	22-2_par	0.571428571	0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.242	84	0	0	NA	8qB1.1	chr8-19751908-129027034	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	1	sgMsh2	cell line
chr7	114521728	114521728	T	C	ENSMUST00000032909.8	1	ENSMUSG00000030671	missense	F/S	696	Pde3b	ENSMUST00000032909.8:c.2087T>C	ENSMUSP00000032909.8:p.Phe696Ser	H-2-Kb	8	11	1	SMNYFRAL	FMNYFRAL	NetMHC	18.9	81.74	4.325	73	0.274	52.956	117.303	2.215	81.74	18.9	112.5	38.5	122.1068422	67.41243274	141.8208226	81.98605697	22-2_par	0.142857143	0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.261	73	0	0	NA	7qF1	chr7-104330969-145323643	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	1	sgMsh2	cell line
chr8	69303062	69303062	A	T	ENSMUST00000078257.6	2	ENSMUSG00000079038	missense	Y/F	373	D130040H23Rik	ENSMUST00000078257.6:c.1118A>T	ENSMUSP00000077378.6:p.Tyr373Phe	H-2-Kb	8	7	5	VTPLFITV	VTPLYITV	NetMHC	35.46	40.28	1.136	91	0.055	65.781	79.292	1.205	40.28	35.46	65.1	55.4	93.48458404	76.16229111	117.4194387	95.66211974	22-2_par	1.757142857	1.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.078	91	0	0	NA	8qB3.3	chr8-19751908-129027034	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.350634552	sgMsh2	cell line
chr7	104893443	104893443	A	G	ENSMUST00000214757.1	5	ENSMUSG00000063582	missense	Y/H	62	Olfr666	ENSMUST00000214757.1:c.184T>C	ENSMUSP00000148919.1:p.Tyr62His	H-2-Kb	8	10	2	MHYFLALL	MYYFLALL	NetMHCpan	27.9	34.9	1.251	131	0.046	40.72	61.403	1.508	51.89	37.41	34.9	27.9	70.91530907	44.02911945	79.56828547	54.7948825	22-2_par	1.642857143	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.045	131	0	0	NA	7qE3	chr7-104330969-145323643	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.202289164	sgMsh2	cell line
chr8	123269053	123269053	GC	G	ENSMUST00000035495.14	1	ENSMUSG00000032815	FS	A/X	1337	Fanca	ENSMUST00000035495.14:c.4009del	ENSMUSP00000045217.8:p.Ala1337ProfsTer43	H-2-Kb	8	26	0	TSSCYSSL	NA	NetMHC	82.03	NA	NA	70	0.086	121.955	NA	NA	NA	82.03	NA	123.2	NA	120.7090967	NA	127.2740898	22-2_par	0.257142857	0.257142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.094	70	0	0	NA	8qE1	chr8-19751908-129027034	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.422559588	sgMsh2	cell line
chr7	85233831	85233831	T	A	ENSMUST00000061074.9	5	ENSMUSG00000096861	missense	I/F	238	Vmn2r68	ENSMUST00000061074.9:c.712A>T	ENSMUSP00000129411.1:p.Ile238Phe	H-2-Kb	8	5	7	LSFVITFL	LSFVITIL	NetMHCpan	53	106	2	191	0.021	92.546	341.39	3.689	325.72	84.69	106	53	482.7696948	148.1630809	357.0590129	100.4014535	22-2_par	2.371428571	2.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.031	191	0	0	NA	7qD3	chr7-26198811-104249043	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.139354758	sgMsh2	cell line
chr8	66680852	66680852	A	G	ENSMUST00000070810.7	1	ENSMUSG00000044014	missense	C/R	430	Npy5r	ENSMUST00000070810.7:c.1288T>C	ENSMUSP00000065157.7:p.Cys430Arg	H-2-Kb	8	6	6	LVYCIRHL	LVYCICHL	NetMHCpan	40.7	73.9	1.816	176	0.074	177.862	234.507	1.318	196.28	108.7	73.9	40.7	382.5956254	349.7357273	272.7344509	247.0244836	22-2_par	0.857142857	0.857142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.074	176	0	0	NA	8qB3.1	chr8-19751908-129027034	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.332653293	sgMsh2	cell line
chr7	105126548	105126548	A	G	ENSMUST00000214399.3	5	ENSMUSG00000059768	missense	L/P	241	Olfr682-ps1	ENSMUST00000214399.3:c.722T>C	ENSMUSP00000154052.1:p.Leu241Pro	H-2-Kb	8	8	4	ILIPFLTL	ILILFLTL	NetMHCpan	31.6	63.6	2.013	163	0.209	104.298	58.822	0.564	92.61	138.41	63.6	31.6	54.04306853	102.9769442	45.99811133	105.6185011	22-2_par	2.342857143	2.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.192	163	0	0	NA	7qE3	chr7-104330969-145323643	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.863100435	sgMsh2	cell line
chr8	82990512	82990512	T	C	ENSMUST00000078525.6	1	ENSMUSG00000047747	missense	I/T	216	Rnf150	ENSMUST00000078525.6:c.647T>C	ENSMUSP00000077610.5:p.Ile216Thr	H-2-Kb	8	8	4	ISFTVLMI	ISFIVLMI	NetMHCpan	102.8	184.6	1.796	69	0.13	143.636	167.687	1.167	178.07	145.17	184.6	102.8	154.4329616	145.1242539	157.3040847	142.1477533	22-2_par	2.242857143	2.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.167	69	0	0	NA	8qC2	chr8-19751908-129027034	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.750717566	sgMsh2	cell line
chr9	19712866	19712866	T	C	ENSMUST00000212013.3	3	ENSMUSG00000094678	missense	I/T	13	Olfr857	ENSMUST00000212013.3:c.38T>C	ENSMUSP00000148617.3:p.Ile13Thr	H-2-Kb	8	6	6	GTLEFTLL	GTLEFILL	NetMHCpan	120.7	266.8	2.21	151	0.053	167.476	242.975	1.451	450.68	178.73	266.8	120.7	219.1492557	198.4906254	179.3659491	156.221211	22-2_par	1.328571429	1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.061	151	0	0	NA	9qA3	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.274214201	sgMsh2	cell line
chr7	103346545	103346545	T	C	ENSMUST00000215042.1	5	ENSMUSG00000045540	missense	I/V	128	Olfr600	ENSMUST00000215042.1:c.382A>G	ENSMUSP00000148967.1:p.Ile128Val	H-2-Kb	8	4	8	AFDRFAAV	AFDRFAAI	SMM	154.789	281.022	1.816	52	0.154	218.173	317.861	1.457	451.29	265.84	354.7	400.5	281.0217928	154.7889663	270.2340064	170.5061311	22-2_par	0.771428571	0.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.162	52	0	0	NA	7qE3	chr7-26198811-104249043	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.728240992	sgMsh2	cell line
chr7	104671490	104671490	CT	C	ENSMUST00000214986.1	5	ENSMUSG00000073922	FS	F/X	263	Olfr659	ENSMUST00000214986.1:c.790del	ENSMUSP00000149939.1:p.Ser264ProfsTer28	H-2-Kb	8	29	0	LTFICFCL	NA	SMMPMBEC	167.009	NA	NA	104	0.038	261.703	NA	NA	NA	290.2	NA	539.2	NA	233.2061504	NA	167.0090478	22-2_par	2.6	2.6	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Vardict	2	0.06	104	0	0	NA	7qE3	chr7-104330969-145323643	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.269718886	sgMsh2	cell line
chr7	103346545	103346545	T	C	ENSMUST00000215042.1	5	ENSMUSG00000045540	missense	I/V	128	Olfr600	ENSMUST00000215042.1:c.382A>G	ENSMUSP00000148967.1:p.Ile128Val	H-2-Kb	8	8	4	FAAVWYPL	FAAIWYPL	NetMHCpan	119.3	123	1.031	52	0.154	329.636	375.569	1.139	547.67	467.27	123	119.3	344.9371732	317.4972734	406.2000757	341.7747702	22-2_par	1.114285714	1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.162	52	0	0	NA	7qE3	chr7-26198811-104249043	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.728240992	sgMsh2	cell line
chr8	14839759	14839759	A	T	ENSMUST00000152652.7	1	ENSMUSG00000047495	missense	Q/L	927	Dlgap2	ENSMUST00000152652.7:c.2780A>T	ENSMUSP00000123078.1:p.Gln927Leu	H-2-Kb	8	9	3	KFLQFYWL	KFQQFYWL	SMM	65.726	157.304	2.393	143	0.049	368.725	753.795	2.044	1759.28	658.16	1269.5	649.6	157.3040847	65.72642338	238.0893668	87.8496428	22-2_par	1.071428571	1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.064	143	0	0	NA	8qA1.1	chr8-3154030-19497986	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.287700145	sgMsh2	cell line
chr7	104671490	104671490	CT	C	ENSMUST00000214986.1	5	ENSMUSG00000073922	FS	F/X	263	Olfr659	ENSMUST00000214986.1:c.790del	ENSMUSP00000149939.1:p.Ser264ProfsTer28	H-2-Kb	8	6	7	AFFCFFPT	AFFCFFSH	SMMPMBEC	115.808	558.136	4.819	104	0.038	365.407	1459.459	3.994	1595.37	1117.77	1605.9	579.2	1323.548926	151.6142424	558.1359543	115.8083836	22-2_par	1.628571429	1.985714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.06	104	0	0	NA	7qE3	chr7-104330969-145323643	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.269718886	sgMsh2	cell line
chr7	105126548	105126548	A	G	ENSMUST00000214399.3	5	ENSMUSG00000059768	missense	L/P	241	Olfr682-ps1	ENSMUST00000214399.3:c.722T>C	ENSMUSP00000154052.1:p.Leu241Pro	H-2-Kb	8	10	2	IPFLTLLL	ILFLTLLL	SMMPMBEC	284.931	235.907	0.828	163	0.209	486.683	269.907	0.555	516.61	1522.51	200.2	679.1	303.9065077	294.2659418	235.9065504	284.9311953	22-2_par	2.242857143	2.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.192	163	0	0	NA	7qE3	chr7-104330969-145323643	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.863100435	sgMsh2	cell line
chr7	103346545	103346545	T	C	ENSMUST00000215042.1	5	ENSMUSG00000045540	missense	I/V	128	Olfr600	ENSMUST00000215042.1:c.382A>G	ENSMUSP00000148967.1:p.Ile128Val	H-2-Kb	9	3	9	MAFDRFAAV	MAFDRFAAI	NetMHC	11.76	16.98	1.444	52	0.154	32.999	34.927	1.058	16.98	11.76	12	14.8	61.53327071	55.73268932	52.87495369	51.19764681	22-2_par	0.771428571	0.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.162	52	0	0	NA	7qE3	chr7-26198811-104249043	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.728240992	sgMsh2	cell line
chr7	108622672	108622672	A	T	ENSMUST00000080014.1	NA	ENSMUSG00000061000	missense	I/F	287	Olfr507	ENSMUST00000080014.1:c.859A>T	ENSMUSP00000078926.1:p.Ile287Phe	H-2-Kb	9	9	3	IAFPMLNPL	IAIPMLNPL	NetMHC	21.59	62.91	2.914	165	0.115	32.184	93.965	2.92	62.91	21.59	68.5	21.6	119.4290561	42.76711949	145.6297151	54.2312981	22-2_par	0.8	1.385714286	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.122	165	0	0	NA	7qE3	chr7-104330969-145323643	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.548428401	sgMsh2	cell line
chr7	114521728	114521728	T	C	ENSMUST00000032909.8	1	ENSMUSG00000030671	missense	F/S	696	Pde3b	ENSMUST00000032909.8:c.2087T>C	ENSMUSP00000032909.8:p.Phe696Ser	H-2-Kb	9	10	2	ESMNYFRAL	EFMNYFRAL	NetMHC	25.1	237.23	9.451	73	0.274	164.301	458.99	2.794	237.23	25.1	348.8	45.3	629.6656471	340.4944207	569.1804832	283.3022345	22-2_par	0.142857143	0.142857143	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.261	73	0	0	NA	7qF1	chr7-104330969-145323643	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	1	sgMsh2	cell line
chr8	82990512	82990512	T	C	ENSMUST00000078525.6	1	ENSMUSG00000047747	missense	I/T	216	Rnf150	ENSMUST00000078525.6:c.647T>C	ENSMUSP00000077610.5:p.Ile216Thr	H-2-Kb	9	6	6	VSISFTVLM	VSISFIVLM	NetMHCpan	25.3	30.6	1.209	69	0.13	39.431	41.068	1.042	29.19	26.85	30.6	25.3	51.53591605	52.01277201	70.02449734	76.07640819	22-2_par	2.242857143	2.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.167	69	0	0	NA	8qC2	chr8-19751908-129027034	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.750717566	sgMsh2	cell line
chr8	44952187	44952187	A	T	ENSMUST00000191428.6	5	ENSMUSG00000070047	missense	L/F	658	Fat1	ENSMUST00000191428.6:c.1974A>T	ENSMUSP00000140596.1:p.Leu658Phe	H-2-Kb	9	7	5	FATPFYINL	FATPLYINL	NetMHCpan	22.3	198.6	8.906	84	0.262	79.887	400.446	5.013	315.48	27.61	198.6	22.3	485.4114317	132.163034	553.6687348	169.9221522	22-2_par	0.571428571	1.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.242	84	0	0	NA	8qB1.1	chr8-19751908-129027034	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	1	sgMsh2	cell line
chr8	123930972	123930972	A	G	ENSMUST00000044795.7	1	ENSMUSG00000039509	missense	V/A	408	Nup133	ENSMUST00000044795.7:c.1223T>C	ENSMUSP00000048084.7:p.Val408Ala	H-2-Kb	9	10	2	MAPNFSSQM	MVPNFSSQM	NetMHC	47.03	54.3	1.155	223	0.081	207.257	241.261	1.164	54.3	47.03	146.7	115.9	335.8226621	298.6138865	437.7740356	378.6604965	22-2_par	-0.785714286	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.082	223	0	0	NA	8qE2	chr8-19751908-129027034	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.368615811	sgMsh2	cell line
chr8	121886367	121886367	T	A	ENSMUST00000045557.9	1	ENSMUSG00000040010	missense	H/L	324	Slc7a5	ENSMUST00000045557.9:c.971A>T	ENSMUSP00000041557.8:p.His324Leu	H-2-Kb	9	3	9	VAVDFGNYL	VAVDFGNYH	NetMHC	52.73	13466	255.376	83	0.084	122.878	7837.638	63.784	13466	52.73	16962.4	62.9	2193.360409	182.8563304	2209.276129	216.8952295	22-2_par	0.3	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.085	83	0	0	NA	8qE1	chr8-19751908-129027034	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.382101755	sgMsh2	cell line
chr7	105126548	105126548	A	G	ENSMUST00000214399.3	5	ENSMUSG00000059768	missense	L/P	241	Olfr682-ps1	ENSMUST00000214399.3:c.722T>C	ENSMUSP00000154052.1:p.Leu241Pro	H-2-Kb	9	8	4	ILIPFLTLL	ILILFLTLL	NetMHCpan	39.9	195.6	4.902	163	0.209	187.661	169.972	0.906	87.4	97.92	195.6	39.9	164.8579898	277.4022632	175.0854271	287.2433612	22-2_par	2.342857143	2.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.192	163	0	0	NA	7qE3	chr7-104330969-145323643	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.863100435	sgMsh2	cell line
chr7	85151698	85151698	AG	A	ENSMUST00000168730.2	5	ENSMUSG00000095664	FS	S/X	343	Vmn2r67	ENSMUST00000168730.2:c.1029del	ENSMUSP00000126007.1:p.Phe344LeufsTer21	H-2-Kb	9	4	9	SNYSSEFSL	SNYSSEFSF	NetMHCpan	96	492.6	5.131	341	0.103	112.891	312.15	2.765	323.52	128.93	492.6	96	163.3465627	96.8523137	300.7807237	173.8801475	22-2_par	-0.085714286	-0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1026	341	0	0	NA	7qD3	chr7-26198811-104249043	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.461219295	sgMsh2	cell line
chr9	14761631	14761631	T	C	ENSMUST00000060330.4	1	ENSMUSG00000031927	missense	Y/C	112	1700012B09Rik	ENSMUST00000060330.4:c.335A>G	ENSMUSP00000049826.3:p.Tyr112Cys	H-2-Kb	9	11	2	KCYSRHGGL	KYYSRHGGL	SMMPMBEC	150.747	102.861	0.682	62	0.065	174.981	95.393	0.545	67.87	151.76	272.4	332.3	87.92451877	198.2028979	102.8608242	150.7474589	22-2_par	-0.971428571	-0.971428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.077	62	0	0	NA	9qA2	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.346139237	sgMsh2	cell line
chr7	104671490	104671490	CT	C	ENSMUST00000214986.1	5	ENSMUSG00000073922	FS	F/X	263	Olfr659	ENSMUST00000214986.1:c.790del	ENSMUSP00000149939.1:p.Ser264ProfsTer28	H-2-Kb	9	19	0	SSLHLASSL	NA	NetMHC	175.25	NA	NA	104	0.038	339.518	NA	NA	NA	175.25	NA	184.6	NA	494.435904	NA	566.5653364	22-2_par	1.2	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.06	104	0	0	NA	7qE3	chr7-104330969-145323643	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.269718886	sgMsh2	cell line
chr7	104671490	104671490	CT	C	ENSMUST00000214986.1	5	ENSMUSG00000073922	FS	F/X	263	Olfr659	ENSMUST00000214986.1:c.790del	ENSMUSP00000149939.1:p.Ser264ProfsTer28	H-2-Kb	9	30	0	TFICFCLPL	NA	SMMPMBEC	173.48	NA	NA	104	0.038	195.108	NA	NA	NA	201.37	NA	296.7	NA	188.8469608	NA	173.4802343	22-2_par	2.614285714	2.614285714	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Vardict	2	0.06	104	0	0	NA	7qE3	chr7-104330969-145323643	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.269718886	sgMsh2	cell line
chr7	108622672	108622672	A	T	ENSMUST00000080014.1	NA	ENSMUSG00000061000	missense	I/F	287	Olfr507	ENSMUST00000080014.1:c.859A>T	ENSMUSP00000078926.1:p.Ile287Phe	H-2-Kb	9	6	6	MIAIAFPML	MIAIAIPML	NetMHCpan	210.1	1777.2	8.459	165	0.115	348.122	1910.057	5.487	3109.82	239.04	1777.2	210.1	1618.489924	457.2039776	2042.913602	597.3790667	22-2_par	2.142857143	2.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.122	165	0	0	NA	7qE3	chr7-104330969-145323643	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.548428401	sgMsh2	cell line
chr7	104893443	104893443	A	G	ENSMUST00000214757.1	5	ENSMUSG00000063582	missense	Y/H	62	Olfr666	ENSMUST00000214757.1:c.184T>C	ENSMUSP00000148919.1:p.Tyr62His	H-2-Kb	9	9	3	PMHYFLALL	PMYYFLALL	SMM	62.967	11.069	0.176	131	0.046	178.654	26.948	0.151	34.07	249.6	77.3	404.2	11.0690411	62.96656471	19.82668013	107.7085055	22-2_par	1.642857143	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.045	131	0	0	NA	7qE3	chr7-104330969-145323643	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.202289164	sgMsh2	cell line
chr8	69303062	69303062	A	T	ENSMUST00000078257.6	2	ENSMUSG00000079038	missense	Y/F	373	D130040H23Rik	ENSMUST00000078257.6:c.1118A>T	ENSMUSP00000077378.6:p.Tyr373Phe	H-2-Kb	9	7	5	VTPLFITVI	VTPLYITVI	NetMHCpan	117.2	152.4	1.3	91	0.055	382.619	455.612	1.191	383.69	271.94	152.4	117.2	606.8900259	493.298733	527.5334467	495.735477	22-2_par	2.5	2.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.078	91	0	0	NA	8qB3.3	chr8-19751908-129027034	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.350634552	sgMsh2	cell line
chr7	85233831	85233831	T	A	ENSMUST00000061074.9	5	ENSMUSG00000096861	missense	I/F	238	Vmn2r68	ENSMUST00000061074.9:c.712A>T	ENSMUSP00000129411.1:p.Ile238Phe	H-2-Kb	9	9	3	ITFLTEHSM	ITILTEHSM	NetMHC	318.91	1259.25	3.949	191	0.021	334.874	1217.412	3.635	1259.25	318.91	1828.8	348.3	897.656128	321.4474612	1175.574075	437.7740356	22-2_par	0.042857143	0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.031	191	0	0	NA	7qD3	chr7-26198811-104249043	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.139354758	sgMsh2	cell line
chr7	105126548	105126548	A	G	ENSMUST00000214399.3	5	ENSMUSG00000059768	missense	L/P	241	Olfr682-ps1	ENSMUST00000214399.3:c.722T>C	ENSMUSP00000154052.1:p.Leu241Pro	H-2-Kb	9	7	5	LILIPFLTL	LILILFLTL	SMM	401.893	297.927	0.741	163	0.209	427.828	390.854	0.914	483.78	404.58	935.1	476.7	297.9270937	401.8925911	263.7849417	451.0762902	22-2_par	2.342857143	3.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.192	163	0	0	NA	7qE3	chr7-104330969-145323643	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.863100435	sgMsh2	cell line
chr7	104671490	104671490	CT	C	ENSMUST00000214986.1	5	ENSMUSG00000073922	FS	F/X	263	Olfr659	ENSMUST00000214986.1:c.790del	ENSMUSP00000149939.1:p.Ser264ProfsTer28	H-2-Kb	9	6	7	AFFCFFPTA	AFFCFFSHR	NetMHCpan	170.7	2775.3	16.258	104	0.038	319.656	544.356	1.703	586.08	436.68	2775.3	170.7	346.8246846	318.5004131	502.6318444	320.8115533	22-2_par	1.485714286	1.985714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.06	104	0	0	NA	7qE3	chr7-104330969-145323643	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.269718886	sgMsh2	cell line
chr7	108622672	108622672	A	T	ENSMUST00000080014.1	NA	ENSMUSG00000061000	missense	I/F	287	Olfr507	ENSMUST00000080014.1:c.859A>T	ENSMUSP00000078926.1:p.Ile287Phe	H-2-Kb	9	3	9	VFYMIAIAF	VFYMIAIAI	SMM	354.903	522.529	1.472	165	0.115	447.932	591.88	1.321	614.58	470.02	1192.3	2201.3	522.5285205	354.9032693	569.1804832	425.8434778	22-2_par	2.285714286	2.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.122	165	0	0	NA	7qE3	chr7-104330969-145323643	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.548428401	sgMsh2	cell line
chr7	110049683	110049683	T	A	ENSMUST00000084731.4	1	ENSMUSG00000066232	missense	M/K	721	Ipo7	ENSMUST00000084731.4:c.2162T>A	ENSMUSP00000081782.3:p.Met721Lys	H-2-Kb	9	7	5	MIYSKCKKV	MIYSMCKKV	SMM	407.483	434.62	1.067	99	0.091	462.011	466.896	1.011	366.56	508.83	656.5	1001.6	434.6202928	407.4834739	499.1717511	415.1929781	22-2_par	-1.014285714	-0.142857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.114	99	0	0	NA	7qE3	chr7-104330969-145323643	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.512465883	sgMsh2	cell line
chr8	82990512	82990512	T	C	ENSMUST00000078525.6	1	ENSMUSG00000047747	missense	I/T	216	Rnf150	ENSMUST00000078525.6:c.647T>C	ENSMUSP00000077610.5:p.Ile216Thr	H-2-Kb	9	8	4	ISFTVLMII	ISFIVLMII	NetMHCpan	251.7	693.9	2.757	69	0.13	498.022	502.131	1.008	539.63	518.24	693.9	251.7	464.6329446	542.1381881	408.5545015	477.8042407	22-2_par	3	3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.167	69	0	0	NA	8qC2	chr8-19751908-129027034	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.750717566	sgMsh2	cell line
chr8	66680852	66680852	A	G	ENSMUST00000070810.7	1	ENSMUSG00000044014	missense	C/R	430	Npy5r	ENSMUST00000070810.7:c.1288T>C	ENSMUSP00000065157.7:p.Cys430Arg	H-2-Kb	9	6	6	LVYCIRHLL	LVYCICHLL	NetMHCpan	189.4	385.6	2.036	176	0.074	426.23	374.444	0.879	441.82	541.83	385.6	189.4	361.5014137	406.5462879	363.2871195	445.9128626	22-2_par	0.8	0.857142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.074	176	0	0	NA	8qB3.1	chr8-19751908-129027034	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.332653293	sgMsh2	cell line
chr7	104671490	104671490	CT	C	ENSMUST00000214986.1	5	ENSMUSG00000073922	FS	F/X	263	Olfr659	ENSMUST00000214986.1:c.790del	ENSMUSP00000149939.1:p.Ser264ProfsTer28	H-2-Kb	10	6	7	AFFCFFPTAL	AFFCFFSHRF	NetMHCpan	71.8	235.8	3.284	104	0.038	384.973	583.868	1.517	272.66	215.5	235.8	71.8	1739.121804	977.9800599	895.0761806	554.4469516	22-2_par	1.628571429	1.985714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.06	104	0	0	NA	7qE3	chr7-104330969-145323643	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.269718886	sgMsh2	cell line
chr9	109221794	109221794	T	C	ENSMUST00000079548.11	1	ENSMUSG00000061701	missense	M/V	349	Fbxw20	ENSMUST00000079548.11:c.1045A>G	ENSMUSP00000078503.6:p.Met349Val	H-2-Db	9	11	1	VGVSNKDVI	MGVSNKDVI	NetMHC	15.82	25.25	1.596	138	0.181	89.209	82.747	0.928	25.25	15.82	36.5	57.2	197.5240583	148.1221475	128.9941455	121.2188055	22-2_par	0.171428571	0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.192	138	0	0	NA	9qF2	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.863100435	sgMsh2	cell line
chr9	80136750	80136750	GA	G	ENSMUST00000165607.8	1	ENSMUSG00000034252	FS	K/X	888	Senp6	ENSMUST00000165607.8:c.2672del	ENSMUSP00000126777.2:p.Asn891IlefsTer44	H-2-Db	9	42	0	ASGMNASVL	NA	NetMHC	36.8	NA	NA	54	0.352	141.593	NA	NA	NA	36.8	NA	75.9	NA	216.0827011	NA	207.2860138	22-2_par	1	1	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.3519	54	0	0	NA	9qE1	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	2	1	sgMsh2	cell line
chr9	78337605	78337605	C	T	ENSMUST00000034902.11	1	ENSMUSG00000057933	missense	A/T	76	Gsta2	ENSMUST00000034902.11:c.226G>A	ENSMUSP00000034902.5:p.Ala76Thr	H-2-Db	9	4	8	RAILNYITT	RAILNYIAT	NetMHC	39.9	111.87	2.804	165	0.042	87.044	146.334	1.681	111.87	39.9	220	103.2	178.4925113	105.5893217	114.1747318	70.88755545	22-2_par	0.942857143	1.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.049	165	0	0	NA	9qE1	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.220270423	sgMsh2	cell line
chr9	40022813	40022813	T	C	ENSMUST00000215956.2	5	ENSMUSG00000046678	missense	V/A	140	Olfr981	ENSMUST00000215956.2:c.419T>C	ENSMUSP00000149436.1:p.Val140Ala	H-2-Db	9	9	3	RSACNYLAL	RSVCNYLAL	NetMHCpan	57.9	19.9	0.344	162	0.025	100.993	38.433	0.381	13.79	59.55	19.9	57.9	56.96656068	142.4360758	63.1786003	183.0501124	22-2_par	1.271428571	1.271428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.04	162	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.179812591	sgMsh2	cell line
chrX	74570734	74570734	T	C	ENSMUST00000059880.6	5	ENSMUSG00000043715	missense	T/A	281	Olfr1326-ps1	ENSMUST00000059880.6:c.841A>G	ENSMUSP00000056853.4:p.Thr281Ala	H-2-Db	9	8	4	LIYANVTPM	LIYTNVTPM	NetMHCpan	69.1	79.8	1.155	88	0.045	89.924	96.856	1.077	64.09	75.48	79.8	69.1	124.6292553	114.1878774	113.9121372	104.3686342	22-2_par	0.114285714	1.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.055	88	0	0	NA	XqA7.3	NA	NA	NA	NA	0.9	4.045783288	POOR GOF (76.7%)	NA	NA	sgMsh2	cell line
chr9	53238121	53238121	A	G	ENSMUST00000065630.7	1	ENSMUSG00000053289	missense	L/S	102	Ddx10	ENSMUST00000065630.7:c.305T>C	ENSMUSP00000065198.6:p.Leu102Ser	H-2-Db	9	11	1	SALQGKDVL	LALQGKDVL	NetMHC	120.81	714.65	5.915	106	0.094	331.381	1042.677	3.146	714.65	120.81	1077.1	201.9	1226.365713	500.7488954	1008.254108	460.8610447	22-2_par	0.071428571	0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.12	106	0	0	NA	9qA5.3	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.539437772	sgMsh2	cell line
chr9	45852929	45852929	TG	T	ENSMUST00000034591.10	1	ENSMUSG00000032086	FS	V/X	101	Bace1	ENSMUST00000034591.10:c.307del	ENSMUSP00000034591.4:p.Ala103LeufsTer44	H-2-Db	9	9	5	FAVGLPHTL	NA	SMM	384.255	NA	NA	140	0.05	443.332	NA	NA	NA	458.54	NA	802.4	NA	384.2554182	NA	428.1244195	22-2_par	0.842857143	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.06	140	0	0	NA	9qA5.2	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.269718886	sgMsh2	cell line
chrX	74570734	74570734	T	C	ENSMUST00000059880.6	5	ENSMUSG00000043715	missense	T/A	281	Olfr1326-ps1	ENSMUST00000059880.6:c.841A>G	ENSMUSP00000056853.4:p.Thr281Ala	H-2-Kb	8	6	6	VSLIYANV	VSLIYTNV	NetMHC	2.38	3.4	1.429	88	0.045	3.35	7.623	2.276	3.4	2.38	6.4	4.3	8.845858744	3.095565516	10.51332282	3.603628392	22-2_par	1.242857143	1.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.055	88	0	0	NA	XqA7.3	NA	NA	NA	NA	0.9	4.045783288	POOR GOF (76.7%)	NA	NA	sgMsh2	cell line
chr9	40022813	40022813	T	C	ENSMUST00000215956.2	5	ENSMUSG00000046678	missense	V/A	140	Olfr981	ENSMUST00000215956.2:c.419T>C	ENSMUSP00000149436.1:p.Val140Ala	H-2-Kb	8	10	2	SACNYLAL	SVCNYLAL	NetMHC	52.59	70.47	1.34	162	0.025	69.28	69.806	1.008	70.47	52.59	123	142.7	64.82462304	63.788149	69.1416915	74.77217263	22-2_par	1.271428571	1.271428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.04	162	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.179812591	sgMsh2	cell line
chr9	30440212	30440212	A	G	ENSMUST00000164099.2	1	ENSMUSG00000031993	missense	T/A	859	Snx19	ENSMUST00000164099.2:c.2575A>G	ENSMUSP00000131895.1:p.Thr859Ala	H-2-Kb	8	5	7	LHIIFGAL	LHIIFGTL	NetMHC	73.91	135.7	1.836	181	0.066	114.632	156.856	1.368	135.7	73.91	136.4	179	193.9724271	116.611129	177.3127641	112.6522836	22-2_par	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.077	181	0	0	NA	9qA4	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.346139237	sgMsh2	cell line
chrX	20927583	20927583	C	CA	ENSMUST00000001156.7	1	ENSMUSG00000001128	FS	-/X	356-357	Cfp	ENSMUST00000001156.7:c.1068dup	ENSMUSP00000001156.7:p.Gly357TrpfsTer11	H-2-Kb	8	13	2	KTPGYSTL	NA	NetMHCpan	166.8	NA	NA	15	0.6	197.767	NA	NA	NA	171.28	NA	166.8	NA	224.2538976	NA	262.8693795	22-2_par	-0.242857143	-0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.5	15	0	0	NA	XqA1.3	NA	NA	NA	NA	0.9	4.045783288	POOR GOF (76.7%)	NA	NA	sgMsh2	cell line
chrX	8524317	8524317	T	C	ENSMUST00000115573.1	5	ENSMUSG00000079704	missense	R/G	62	Gm14459	ENSMUST00000115573.1:c.184A>G	ENSMUSP00000111236.1:p.Arg62Gly	H-2-Kb	8	4	8	SAYVYMKG	SAYVYMKR	SMM	91.357	146.467	1.603	383	0.031	166.59	189.837	1.14	117.12	200.52	880.6	406	146.4670721	91.35661511	233.2061504	132.6600022	22-2_par	0.142857143	0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.038	383	0	0	NA	XqA1.1	NA	NA	NA	NA	0.9	4.045783288	POOR GOF (76.7%)	NA	NA	sgMsh2	cell line
chr9	86679867	86679867	A	G	ENSMUST00000034989.14	1	ENSMUSG00000032418	missense	V/A	55	Me1	ENSMUST00000034989.14:c.164T>C	ENSMUSP00000034989.8:p.Val55Ala	H-2-Kb	8	5	7	ISQELQAL	ISQELQVL	SMM	152.665	359.534	2.355	42	0.095	219.067	875.526	3.997	1225.35	204.39	1238.2	527.5	359.5340277	152.6651821	525.7024488	233.7437461	22-2_par	-0.271428571	-0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.111	42	0	0	NA	9qE3.1	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.498979939	sgMsh2	cell line
chr9	121909499	121909499	C	A	ENSMUST00000214340.1	1	ENSMUSG00000044534	missense	F/L	313	Ackr2	ENSMUST00000214340.1:c.939C>A	ENSMUSP00000148966.1:p.Phe313Leu	H-2-Kb	8	4	8	FTPVLYAL	FTPVLYAF	NetMHC	222.37	3368.39	15.148	36	0.111	367.539	4801.003	13.063	3368.39	222.37	2047.5	351.6	6233.615346	383.4775994	6276.824703	499.7352678	22-2_par	1.428571429	1.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.108	36	0	0	NA	9qF4	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.485493995	sgMsh2	cell line
chr9	45852929	45852929	TG	T	ENSMUST00000034591.10	1	ENSMUSG00000032086	FS	V/X	101	Bace1	ENSMUST00000034591.10:c.307del	ENSMUSP00000034591.4:p.Ala103LeufsTer44	H-2-Kb	8	6	8	SSNFAVGL	SSNFAVGA	NetMHCpan	229.8	7085.3	30.832	140	0.05	360.088	8545.64	23.732	11541.81	321.39	7085.3	229.8	8506.286381	398.7860888	8584.99408	492.8786429	22-2_par	1.128571429	1.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.06	140	0	0	NA	9qA5.2	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.269718886	sgMsh2	cell line
chr9	40101128	40101128	C	T	ENSMUST00000213858.1	5	ENSMUSG00000045812	missense	D/N	121	Olfr984	ENSMUST00000213858.1:c.361G>A	ENSMUSP00000150545.1:p.Asp121Asn	H-2-Kb	9	8	4	MAYNRYIAI	MAYDRYIAI	NetMHCpan	11.6	16	1.379	54	0.074	24.339	31.81	1.307	26.7	15.24	16	11.6	38.46892055	36.99218633	36.91900603	33.43874735	22-2_par	0.028571429	0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.082	54	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.368615811	sgMsh2	cell line
chr9	39461814	39461814	G	T	ENSMUST00000080329.1	NA	ENSMUSG00000094745	missense	A/S	128	Olfr954	ENSMUST00000080329.1:c.382G>T	ENSMUSP00000079205.1:p.Ala128Ser	H-2-Kb	9	4	8	MAYDRYVSI	MAYDRYVAI	NetMHCpan	13.3	14.4	1.083	310	0.032	31.303	30.259	0.967	27.08	28.78	14.4	13.3	39.27443988	40.65462879	33.43874735	33.8259498	22-2_par	-0.385714286	-0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.034	310	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.152840702	sgMsh2	cell line
chrX	74570734	74570734	T	C	ENSMUST00000059880.6	5	ENSMUSG00000043715	missense	T/A	281	Olfr1326-ps1	ENSMUST00000059880.6:c.841A>G	ENSMUSP00000056853.4:p.Thr281Ala	H-2-Kb	9	5	7	IVSLIYANV	IVSLIYTNV	NetMHC	91.06	288.45	3.168	88	0.045	357.873	521.989	1.459	288.45	91.06	261	160.8	822.4509375	615.3327071	755.5270188	554.9450731	22-2_par	1.242857143	2.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.055	88	0	0	NA	XqA7.3	NA	NA	NA	NA	0.9	4.045783288	POOR GOF (76.7%)	NA	NA	sgMsh2	cell line
chrX	74570734	74570734	T	C	ENSMUST00000059880.6	5	ENSMUSG00000043715	missense	T/A	281	Olfr1326-ps1	ENSMUST00000059880.6:c.841A>G	ENSMUSP00000056853.4:p.Thr281Ala	H-2-Kb	9	8	4	LIYANVTPM	LIYTNVTPM	NetMHCpan	132.8	118.9	0.895	88	0.045	218.618	186.265	0.852	134.16	153.28	118.9	132.8	269.2216614	301.3769268	238.3691237	283.9553136	22-2_par	0.114285714	1.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.055	88	0	0	NA	XqA7.3	NA	NA	NA	NA	0.9	4.045783288	POOR GOF (76.7%)	NA	NA	sgMsh2	cell line
chr9	88370247	88370247	G	T	ENSMUST00000034992.7	1	ENSMUSG00000032420	missense	S/I	554	Nt5e	ENSMUST00000034992.7:c.1661G>T	ENSMUSP00000034992.6:p.Ser554Ile	H-2-Kb	9	11	1	IHYQGSFPL	SHYQGSFPL	NetMHCpan	106.4	141.1	1.326	132	0.053	231.754	307.097	1.325	294.96	218.54	141.1	106.4	319.2346324	244.968363	406.6773641	266.8394274	22-2_par	-0.142857143	-0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.077	132	0	0	NA	9qE3.1	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.346139237	sgMsh2	cell line
chr9	80136750	80136750	GA	G	ENSMUST00000165607.8	1	ENSMUSG00000034252	FS	K/X	888	Senp6	ENSMUST00000165607.8:c.2672del	ENSMUSP00000126777.2:p.Asn891IlefsTer44	H-2-Kb	9	47	0	ASVLYIIQM	NA	NetMHC	227.71	NA	NA	54	0.352	259.534	NA	NA	NA	227.71	NA	259.5	NA	350.0338139	NA	259.5673122	22-2_par	2.014285714	2.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.3519	54	0	0	NA	9qE1	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	2	1	sgMsh2	cell line
chrX	20927583	20927583	C	CA	ENSMUST00000001156.7	1	ENSMUSG00000001128	FS	-/X	356-357	Cfp	ENSMUST00000001156.7:c.1068dup	ENSMUSP00000001156.7:p.Gly357TrpfsTer11	H-2-Kb	9	13	0	KTPGYSTLL	NA	NetMHC	231.93	NA	NA	15	0.6	414.64	NA	NA	NA	231.93	NA	279.6	NA	549.6800816	NA	769.5733148	22-2_par	0.4	0.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.5	15	0	0	NA	XqA1.3	NA	NA	NA	NA	0.9	4.045783288	POOR GOF (76.7%)	NA	NA	sgMsh2	cell line
chr9	40022813	40022813	T	C	ENSMUST00000215956.2	5	ENSMUSG00000046678	missense	V/A	140	Olfr981	ENSMUST00000215956.2:c.419T>C	ENSMUSP00000149436.1:p.Val140Ala	H-2-Kb	9	9	3	RSACNYLAL	RSVCNYLAL	NetMHC	271.43	152.27	0.561	162	0.025	420.576	311.555	0.741	152.27	271.43	195.3	335.2	455.1033161	505.9527957	427.809082	551.1248581	22-2_par	1.271428571	1.271428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.04	162	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.179812591	sgMsh2	cell line
chrX	8524317	8524317	T	C	ENSMUST00000115573.1	5	ENSMUSG00000079704	missense	R/G	62	Gm14459	ENSMUST00000115573.1:c.184A>G	ENSMUSP00000111236.1:p.Arg62Gly	H-2-Kb	9	11	1	GNYIRMTDL	RNYIRMTDL	SMMPMBEC	112.785	108.455	0.962	383	0.031	166.742	88.268	0.529	68.08	358.95	45.8	155.2	159.9963223	178.2830273	108.4551052	112.784651	22-2_par	0.028571429	0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.038	383	0	0	NA	XqA1.1	NA	NA	NA	NA	0.9	4.045783288	POOR GOF (76.7%)	NA	NA	sgMsh2	cell line
chrX	100815264	100815264	T	C	ENSMUST00000087984.10	1	ENSMUSG00000000881	missense	M/T	803	Dlg3	ENSMUST00000087984.10:c.2408T>C	ENSMUSP00000085299.4:p.Met803Thr	H-2-Kb	9	5	7	KIFDKATKL	KIFDKAMKL	NetMHCpan	208.6	152.9	0.733	121	0.107	466.114	393.462	0.844	259.39	456.62	152.9	208.6	553.4902819	539.6472894	527.5334467	475.6089297	22-2_par	-0.514285714	-0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.107	121	0	0	NA	XqC3	NA	NA	NA	NA	0.9	4.045783288	POOR GOF (76.7%)	NA	NA	sgMsh2	cell line
chrX	8524317	8524317	T	C	ENSMUST00000115573.1	5	ENSMUSG00000079704	missense	R/G	62	Gm14459	ENSMUST00000115573.1:c.184A>G	ENSMUSP00000111236.1:p.Arg62Gly	H-2-Kb	9	6	6	YVYMKGNYI	YVYMKRNYI	NetMHCpan	441.5	245.1	0.555	383	0.031	488.301	257.471	0.527	241.24	514.81	245.1	441.5	269.8422814	485.4114317	298.0231495	491.1905468	22-2_par	-0.571428571	-0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.038	383	0	0	NA	XqA1.1	NA	NA	NA	NA	0.9	4.045783288	POOR GOF (76.7%)	NA	NA	sgMsh2	cell line
chrX	8524317	8524317	T	C	ENSMUST00000115573.1	5	ENSMUSG00000079704	missense	R/G	62	Gm14459	ENSMUST00000115573.1:c.184A>G	ENSMUSP00000111236.1:p.Arg62Gly	H-2-Kb	9	8	4	YMKGNYIRM	YMKRNYIRM	SMMPMBEC	326.776	347.736	1.064	383	0.031	499.227	405.173	0.812	436.14	650.83	629.1	1242.6	374.2053566	347.6241981	347.7362769	326.7758854	22-2_par	-1.028571429	-0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.038	383	0	0	NA	XqA1.1	NA	NA	NA	NA	0.9	4.045783288	POOR GOF (76.7%)	NA	NA	sgMsh2	cell line
chr7	56155055	56155055	C	T	ENSMUST00000164095.2	1	ENSMUSG00000030451	missense	T/M	2277	Herc2	ENSMUST00000164095.2:c.6830C>T	ENSMUSP00000131573.1:p.Thr2277Met	H-2-Db	9	3	9	FSVNNLPFM	FSVNNLPFT	NetMHC	15.26	284.57	18.648	139	0.058	20.234	313.125	15.475	284.57	15.26	763.4	17.1	341.6803474	23.36791692	260.9576303	28.22084413	DC1246T2	0.585714286	0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.053	139	0	0	NA	7qB5	chr7-4743149-145322663	4	3	1	0.814	5.055147632	RARE KARYOTYPE	1	0.329143519	sgTom	autochthonous
chrX	89930694	89930694	TA	T	ENSMUST00000088146.2	1	ENSMUSG00000035387	FS	F/X	632	4930415L06Rik	ENSMUST00000088146.2:c.1896del	ENSMUSP00000085471.2:p.Phe632LeufsTer16	H-2-Db	9	11	1	LGLLNQLSM	NA	NetMHC	143.89	NA	NA	77	0.208	168.823	NA	NA	NA	143.89	NA	195.3	NA	158.3507045	NA	179.295752	DC1246T2	0.785714286	1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.185	77	0	0	NA	XqC1	NA	NA	NA	NA	0.814	5.055147632	RARE KARYOTYPE	NA	NA	sgTom	autochthonous
chrX	89930694	89930694	TA	T	ENSMUST00000088146.2	1	ENSMUSG00000035387	FS	F/X	632	4930415L06Rik	ENSMUST00000088146.2:c.1896del	ENSMUSP00000085471.2:p.Phe632LeufsTer16	H-2-Kb	8	6	6	IVENFLGL	IVENFFRA	SMMPMBEC	75.29	449.511	5.97	77	0.208	118.455	1839.508	15.529	3608.11	133.63	2864.8	132.5	814.2166892	104.4094962	449.5106648	75.29046857	DC1246T2	1.028571429	1.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.185	77	0	0	NA	XqC1	NA	NA	NA	NA	0.814	5.055147632	RARE KARYOTYPE	NA	NA	sgTom	autochthonous
chrX	89930694	89930694	TA	T	ENSMUST00000088146.2	1	ENSMUSG00000035387	FS	F/X	632	4930415L06Rik	ENSMUST00000088146.2:c.1896del	ENSMUSP00000085471.2:p.Phe632LeufsTer16	H-2-Kb	8	4	8	VNIVENFL	VNIVENFF	SMMPMBEC	327.899	4118.509	12.56	77	0.208	468.768	4901.817	10.457	6722.73	1142.77	3998.2	587.8	5685.124764	349.7357273	4118.508816	327.8989304	DC1246T2	0.685714286	0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.185	77	0	0	NA	XqC1	NA	NA	NA	NA	0.814	5.055147632	RARE KARYOTYPE	NA	NA	sgTom	autochthonous
chr17	23360046	23360046	G	A	ENSMUST00000168175.2	1	ENSMUSG00000091076	missense	C/Y	831	Vmn2r115	ENSMUST00000168175.2:c.2492G>A	ENSMUSP00000131447.1:p.Cys831Tyr	H-2-Kb	9	7	5	FVPKYYTIL	FVPKCYTIL	NetMHC	55.93	428.87	7.668	573	0.035	98.87	489.736	4.953	428.87	55.93	615.4	60.3	460.3731641	137.4390042	519.0987702	161.1573064	DC1246T2	-0.071428571	-0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.038	573	0	0	NA	17qA3.3	chr17-3078964-90208269	6	4	2	0.814	5.055147632	RARE KARYOTYPE	1	0.235989693	sgTom	autochthonous
chrX	89930694	89930694	TA	T	ENSMUST00000088146.2	1	ENSMUSG00000035387	FS	F/X	632	4930415L06Rik	ENSMUST00000088146.2:c.1896del	ENSMUSP00000085471.2:p.Phe632LeufsTer16	H-2-Kb	9	6	6	IVENFLGLL	IVENFFRAF	NetMHC	140.33	172.94	1.232	77	0.208	246.861	303.92	1.231	172.94	140.33	278.8	249.8	407.4834739	325.1696473	329.0409876	243.9214539	DC1246T2	0.971428571	1.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.185	77	0	0	NA	XqC1	NA	NA	NA	NA	0.814	5.055147632	RARE KARYOTYPE	NA	NA	sgTom	autochthonous
chr17	23360046	23360046	G	A	ENSMUST00000168175.2	1	ENSMUSG00000091076	missense	C/Y	831	Vmn2r115	ENSMUST00000168175.2:c.2492G>A	ENSMUSP00000131447.1:p.Cys831Tyr	H-2-Kb	9	6	6	IFVPKYYTI	IFVPKCYTI	NetMHC	249.84	1056.86	4.23	573	0.035	418.095	1884.744	4.508	1056.86	249.84	2478	467.7	1919.154771	409.3643322	1850.33345	426.8251484	DC1246T2	-0.014285714	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.038	573	0	0	NA	17qA3.3	chr17-3078964-90208269	6	4	2	0.814	5.055147632	RARE KARYOTYPE	1	0.235989693	sgTom	autochthonous
chr7	45050270	45050270	GC	G	ENSMUST00000057293.7	5	ENSMUSG00000046574	FS	G/X	99	Prr12	ENSMUST00000057293.7:c.296del	ENSMUSP00000054702.6:p.Gly99AlafsTer93	H-2-Db	9	37	0	RAPRNSSSL	NA	NetMHC	25.23	NA	NA	53	0.113	85.007	NA	NA	NA	25.23	NA	38	NA	132.0140029	NA	146.4097503	DC1320T1	-1.171428571	-1.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.124	53	28	3	0.107142857	7qB3	chr7-4526592-143062472	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.576889308	sgMsh2	autochthonous
chr1	131349496	131349496	CA	C	ENSMUST00000097588.8	5	ENSMUSG00000026425	FS	C/X	338	Srgap2	ENSMUST00000097588.8:c.1012del	ENSMUSP00000095195.2:p.Cys338AlafsTer4	H-2-Kb	8	6	6	YNNVFAPL	YNNVFCPP	NetMHC	8.7	17810.61	2047.197	220	0.159	17.511	5394.985	308.096	17810.61	8.7	9301.5	19.5	1252.391179	17.20838049	1488.469706	17.81312026	DC1320T1	0.571428571	0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.15	220	11	0	0	1qE4	chr1-4839315-194950953	3	2	1	0.807	3.754432835	POOR GOF (78.9%)	1	0.697849969	sgMsh2	autochthonous
chr15	98543573	98543573	AG	A	ENSMUST00000169707.7	1	ENSMUSG00000011960	FS	L/X	605	Ccnt1	ENSMUST00000169707.7:c.1813del	ENSMUSP00000126874.1:p.Leu605PhefsTer4	H-2-Kb	8	4	8	LNFPFPPF	LNFPFPPL	NetMHCpan	33.2	5.1	0.154	185	0.108	98.642	7.355	0.075	4.66	52.16	5.1	33.2	9.610367602	156.221211	11.55420317	145.1242539	DC1320T1	0.014285714	0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1081	185	35	5	0.142857143	15qF1	chr15-3341105-103103068	5	3	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.502917211	sgMsh2	autochthonous
chr15	26409319	26409319	G	T	ENSMUST00000140840.7	2	ENSMUSG00000022269	missense	G/V	368	44266	ENSMUST00000140840.7:c.1103G>T	ENSMUSP00000118729.1:p.Gly368Val	H-2-Kb	8	10	2	CVYVLLHL	CGYVLLHL	NetMHC	71.8	83.89	1.168	225	0.093	108.185	112.044	1.036	83.89	71.8	80.8	93.7	140.197413	122.6704617	167.7799266	141.1692151	DC1320T1	2.185714286	2.185714286	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.094	225	0	0	NA	15qB1	chr15-3341105-103103068	5	3	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.437319314	sgMsh2	autochthonous
chr10	129046874	129046874	T	G	ENSMUST00000216460.1	5	ENSMUSG00000056853	missense	N/T	63	Olfr765	ENSMUST00000216460.1:c.188A>C	ENSMUSP00000150725.1:p.Asn63Thr	H-2-Kb	8	10	2	RTFSFLEI	RNFSFLEI	NetMHCpan	27.9	21.6	0.774	344	0.017	132.127	132.872	1.006	97.19	123.41	21.6	27.9	168.5543635	151.2655393	175.6871509	140.8445349	DC1320T1	1.271428571	1.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.019	344	0	0	NA	10qD3	chr10-4453448-130453386	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.088394329	sgMsh2	autochthonous
chr4	102964627	102964627	CA	C	ENSMUST00000080728.12	1	ENSMUSG00000028524	FS	Q/X	640	Sgip1	ENSMUST00000080728.12:c.1923del	ENSMUSP00000079553.6:p.Lys641AsnfsTer26	H-2-Kb	8	18	0	IMWTCSNI	NA	NetMHCpan	126.1	NA	NA	270	0.07	175.766	NA	NA	NA	141.28	NA	126.1	NA	322.6561891	NA	210.2519343	DC1320T1	0.428571429	0.428571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.069	270	0	0	NA	4qC6	chr4-5799947-156200568	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.321010986	sgMsh2	autochthonous
chr15	26409319	26409319	G	T	ENSMUST00000140840.7	2	ENSMUSG00000022269	missense	G/V	368	44266	ENSMUST00000140840.7:c.1103G>T	ENSMUSP00000118729.1:p.Gly368Val	H-2-Kb	8	4	8	TSPRFQCV	TSPRFQCG	NetMHC	151.88	11921.94	78.496	225	0.093	255.724	5788.512	22.636	11921.94	151.88	10244.3	575.4	947.8508415	243.0748352	1332.723329	268.3737286	DC1320T1	-0.128571429	-0.128571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.094	225	0	0	NA	15qB1	chr15-3341105-103103068	5	3	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.437319314	sgMsh2	autochthonous
chr7	103639987	103639987	T	C	ENSMUST00000213536.1	5	ENSMUSG00000050085	missense	K/R	51	Olfr622	ENSMUST00000213536.1:c.152A>G	ENSMUSP00000150390.1:p.Lys51Arg	H-2-Kb	8	5	7	IVIATIRL	IVIATIKL	NetMHCpan	188.5	431.9	2.291	251	0.092	211.232	640.157	3.031	834.86	216.05	431.9	188.5	715.7148034	250.4609364	564.598864	206.414404	DC1320T1	1.942857143	2.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.094	251	0	0	NA	7qE3	chr7-4526592-143062472	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.437319314	sgMsh2	autochthonous
chr16	45143932	45143932	TA	T	ENSMUST00000023344.9	1	ENSMUSG00000022664	FS	Y/X	313	Slc35a5	ENSMUST00000023344.9:c.937del	ENSMUSP00000023344.3:p.Tyr313MetfsTer8	H-2-Kb	8	7	5	CGFFMATM	CGFFYGHN	NetMHCpan	52.6	2098.5	39.895	133	0.105	307.877	1189.438	3.863	9015.34	287.1	2098.5	52.6	206.414404	328.6548155	280.3754606	401.5503419	DC1320T1	1.442857143	1.528571429	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.116	133	57	2	0.035087719	16qB5	chr16-3948854-96819699	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.539670643	sgMsh2	autochthonous
chr8	121753036	121753036	G	A	ENSMUST00000026357.11	1	ENSMUSG00000025318	missense	G/D	151	Jph3	ENSMUST00000026357.11:c.452G>A	ENSMUSP00000026357.5:p.Gly151Asp	H-2-Kb	8	8	4	VPYDMAAV	VPYGMAAV	SMM	99.024	125.817	1.271	67	0.119	234.925	305.232	1.299	453.16	336.27	1783.1	1483.5	125.8171954	99.0238939	157.3040847	133.5795574	DC1320T1	0.471428571	0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.133	67	0	0	NA	8qE1	chr8-3192924-127409529	5	3	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.618760306	sgMsh2	autochthonous
chr5	110295302	110295302	AT	A	ENSMUST00000007296.11	1	ENSMUSG00000007080	FS	D/X	365	Pole	ENSMUST00000007296.11:c.1101del	ENSMUSP00000007296.5:p.Phe367LeufsTer21	H-2-Kb	8	6	8	VTYNGDFL	VTYNGDFF	SMM	123.806	2012.519	16.255	298	0.124	216.372	1890.784	8.739	4491.02	396.5	1357.4	291.9	2012.51905	123.8055176	1769.049561	140.8445349	DC1320T1	-0.4	-0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.126	298	6	0	0	5qF	chr5-3673201-150769641	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.586193974	sgMsh2	autochthonous
chr10	129046874	129046874	T	G	ENSMUST00000216460.1	5	ENSMUSG00000056853	missense	N/T	63	Olfr765	ENSMUST00000216460.1:c.188A>C	ENSMUSP00000150725.1:p.Asn63Thr	H-2-Kb	8	8	4	FLRTFSFL	FLRNFSFL	SMM	138.593	154.078	1.112	344	0.017	186.723	230.456	1.234	404.09	414.81	283.6	224.6	154.0777756	138.5925865	177.3127641	148.8469706	DC1320T1	1.028571429	1.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.019	344	0	0	NA	10qD3	chr10-4453448-130453386	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.088394329	sgMsh2	autochthonous
chr19	30547353	30547353	GT	G	ENSMUST00000025803.8	1	ENSMUSG00000024868	FS	K/X	217	Dkk1	ENSMUST00000025803.8:c.651del	ENSMUSP00000025803.8:p.Lys217AsnfsTer61	H-2-Kb	8	50	0	ITIKPAIL	NA	SMM	322.656	NA	NA	100	0.06	399.374	NA	NA	NA	435.34	NA	413.5	NA	322.6561891	NA	385.2476516	DC1320T1	1.2	1.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.062	100	0	0	NA	19qC1	chr19-3491023-60580294	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.288444654	sgMsh2	autochthonous
chr19	30547353	30547353	GT	G	ENSMUST00000025803.8	1	ENSMUSG00000024868	FS	K/X	217	Dkk1	ENSMUST00000025803.8:c.651del	ENSMUSP00000025803.8:p.Lys217AsnfsTer61	H-2-Kb	8	29	0	TGWRYSSA	NA	NetMHCpan	198.9	NA	NA	100	0.06	369.341	NA	NA	NA	455.06	NA	198.9	NA	465.3074435	NA	283.6220554	DC1320T1	-0.985714286	-0.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.062	100	0	0	NA	19qC1	chr19-3491023-60580294	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.288444654	sgMsh2	autochthonous
chr6	136044013	136044013	AC	A	ENSMUST00000053880.12	5	ENSMUSG00000030209	FS	V/X	97	Grin2b	ENSMUST00000053880.12:c.289del	ENSMUSP00000062284.5:p.Val97TrpfsTer36	H-2-Kb	8	27	0	ISFLLRLS	NA	SMM	180.194	NA	NA	199	0.09	431.498	NA	NA	NA	1311.07	NA	618.8	NA	180.1938647	NA	244.1968177	DC1320T1	1.157142857	1.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.095	199	0	0	NA	6qG1	chr6-3483595-149055161	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.441971647	sgMsh2	autochthonous
chr6	136044013	136044013	AC	A	ENSMUST00000053880.12	5	ENSMUSG00000030209	FS	V/X	97	Grin2b	ENSMUST00000053880.12:c.289del	ENSMUSP00000062284.5:p.Val97TrpfsTer36	H-2-Kb	9	25	0	SSISFLLRL	NA	NetMHCpan	8.6	NA	NA	199	0.09	27.974	NA	NA	NA	9.27	NA	8.6	NA	46.67775928	NA	69.22293355	DC1320T1	1.914285714	1.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.095	199	0	0	NA	6qG1	chr6-3483595-149055161	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.441971647	sgMsh2	autochthonous
chr15	98543573	98543573	AG	A	ENSMUST00000169707.7	1	ENSMUSG00000011960	FS	L/X	605	Ccnt1	ENSMUST00000169707.7:c.1813del	ENSMUSP00000126874.1:p.Leu605PhefsTer4	H-2-Kb	9	4	8	LNFPFPPFL	LNFPFPPLP	NetMHCpan	20.4	4434.3	217.368	185	0.108	109.169	2677.64	24.527	6146.12	49.64	4434.3	20.4	424.7271271	168.6980257	920.9795777	208.0894201	DC1320T1	1.057142857	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1081	185	35	5	0.142857143	15qF1	chr15-3341105-103103068	5	3	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.502917211	sgMsh2	autochthonous
chr19	30547353	30547353	GT	G	ENSMUST00000025803.8	1	ENSMUSG00000024868	FS	K/X	217	Dkk1	ENSMUST00000025803.8:c.651del	ENSMUSP00000025803.8:p.Lys217AsnfsTer61	H-2-Kb	9	29	0	TGWRYSSAV	NA	NetMHC	66.35	NA	NA	100	0.06	374.286	NA	NA	NA	66.35	NA	72.1	NA	726.289892	NA	676.4722721	DC1320T1	-0.328571429	-0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.062	100	0	0	NA	19qC1	chr19-3491023-60580294	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.288444654	sgMsh2	autochthonous
chr15	7305117	7305117	T	C	ENSMUST00000096494.4	1	ENSMUSG00000042961	missense	T/A	132	Egflam	ENSMUST00000096494.4:c.394A>G	ENSMUSP00000094238.4:p.Thr132Ala	H-2-Kb	9	5	7	SFPRHVATL	SFPRHVTTL	NetMHC	91.84	279.74	3.046	174	0.046	462.548	677.546	1.465	279.74	91.84	481.9	271.8	873.1925064	653.2960014	980.0539875	719.8632454	DC1320T1	-0.028571429	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.051	174	3	0	0	15qA1	chr15-3341105-103103068	5	3	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.23726899	sgMsh2	autochthonous
chr3	64279013	64279013	A	G	ENSMUST00000170244.2	5	ENSMUSG00000091572	missense	S/P	56	Vmn2r3	ENSMUST00000170244.2:c.166T>C	ENSMUSP00000126165.1:p.Ser56Pro	H-2-Kb	9	5	7	SQMLFLPRF	SQMLFLSRF	NetMHC	99.13	73.8	0.744	408	0.039	157.133	135.168	0.86	73.8	99.13	87.9	107.2	182.4357725	207.066575	258.9703239	287.9055255	DC1320T1	1.285714286	1.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.046	408	0	0	NA	3qE1	chr3-11824041-159911278	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.214007324	sgMsh2	autochthonous
chr9	66751986	66751986	T	G	ENSMUST00000071889.12	1	ENSMUSG00000032373	missense	L/R	191	Car12	ENSMUST00000071889.12:c.572T>G	ENSMUSP00000071786.6:p.Leu191Arg	H-2-Kb	9	6	6	KIFSHRQHV	KIFSHLQHV	NetMHC	151.54	81.03	0.535	159	0.031	250.751	131.532	0.525	81.03	151.54	85.6	202.2	177.4638912	299.3022626	257.7804634	413.2853397	DC1320T1	-1.171428571	-1.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.035	159	0	0	NA	9qC	chr9-7130668-123811654	3	2	1	0.807	3.754432835	POOR GOF (78.9%)	1	0.16283166	sgMsh2	autochthonous
chr14	59596918	59596918	G	T	ENSMUST00000225839.1	NA	ENSMUSG00000021982	missense	L/I	42	Cdadc1	ENSMUST00000225839.1:c.124C>A	ENSMUSP00000153357.1:p.Leu42Ile	H-2-Kb	9	5	7	VNLFTLISL	VNLFTLLSL	NetMHCpan	103.6	86.8	0.838	164	0.085	164.943	169.732	1.029	158.7	155.26	86.8	103.6	180.7631913	174.6264398	237.82089	232.4074256	DC1320T1	2.457142857	2.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.093	164	64	9	0.140625	14qC3	chr14-3072210-123592557	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.432666981	sgMsh2	autochthonous
chr3	64279066	64279066	G	A	ENSMUST00000170244.2	5	ENSMUSG00000091572	missense	T/M	38	Vmn2r3	ENSMUST00000170244.2:c.113C>T	ENSMUSP00000126165.1:p.Thr38Met	H-2-Kb	9	3	9	VHYRTIPTM	VHYRTIPTT	NetMHCpan	116.4	1599.5	13.741	274	0.026	196.592	1419.505	7.221	2242.23	155.44	1599.5	116.4	1044.984864	237.7442379	1239.5099	334.3874735	DC1320T1	-0.342857143	-0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.028	274	0	0	NA	3qE1	chr3-11824041-159911278	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.130265328	sgMsh2	autochthonous
chr1	110137896	110137896	GA	G	ENSMUST00000112701.7	5	ENSMUSG00000026312	FS	R/X	633	Cdh7	ENSMUST00000112701.7:c.1905del	ENSMUSP00000108321.1:p.Glu636SerfsTer15	H-2-Kb	9	15	0	LSFLMRRGI	NA	NetMHCpan	151.5	NA	NA	66	0.121	304.462	NA	NA	NA	176.3	NA	151.5	NA	432.6233939	NA	509.6241499	DC1320T1	0.514285714	0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.106	66	0	0	NA	1qE2.1	chr1-4839315-194950953	3	2	1	0.807	3.754432835	POOR GOF (78.9%)	1	0.493147312	sgMsh2	autochthonous
chr2	145908630	145908630	GA	G	ENSMUST00000134759.2	2	ENSMUSG00000002728	FS	R/X	31	Naa20	ENSMUST00000134759.2:c.103del	ENSMUSP00000126280.1:p.Ser35ValfsTer19	H-2-Kb	9	7	9	VSFLRKKKV	VSFLRKKKS	SMMPMBEC	128.012	315.682	2.466	67	0.164	175.866	1650.906	9.387	2986.13	193.93	4231.4	309.6	264.3078123	157.8010905	315.6821313	128.0117987	DC1320T1	-0.771428571	-0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1642	67	3	0	0	2qG1	chr2-4513773-181511691	3	2	1	0.807	3.754432835	POOR GOF (78.9%)	1	0.7639131	sgMsh2	autochthonous
chr13	21142826	21142826	A	G	ENSMUST00000216039.2	3	ENSMUSG00000045474	missense	I/T	77	Olfr1368	ENSMUST00000216039.2:c.230T>C	ENSMUSP00000149549.1:p.Ile77Thr	H-2-Kb	9	11	1	TVPQMLVNL	IVPQMLVNL	NetMHC	211.04	76.16	0.361	171	0.082	469.897	248.406	0.529	76.16	211.04	117.4	289.5	379.4110717	650.2943789	396.5062159	656.5230826	DC1320T1	0.728571429	1.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.093	171	0	0	NA	13qA2	chr13-5861853-119495179	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.432666981	sgMsh2	autochthonous
chr10	129046874	129046874	T	G	ENSMUST00000216460.1	5	ENSMUSG00000056853	missense	N/T	63	Olfr765	ENSMUST00000216460.1:c.188A>C	ENSMUSP00000150725.1:p.Asn63Thr	H-2-Kb	9	4	8	PMYFFLRTF	PMYFFLRNF	SMM	57.559	48.207	0.838	344	0.017	168.559	114.491	0.679	145.18	236.83	291.9	428.2	48.20698829	57.55857057	83.80115415	100.2882377	DC1320T1	0.814285714	0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.019	344	0	0	NA	10qD3	chr10-4453448-130453386	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.088394329	sgMsh2	autochthonous
chr10	129046874	129046874	T	G	ENSMUST00000216460.1	5	ENSMUSG00000056853	missense	N/T	63	Olfr765	ENSMUST00000216460.1:c.188A>C	ENSMUSP00000150725.1:p.Asn63Thr	H-2-Kb	9	6	6	YFFLRTFSF	YFFLRNFSF	NetMHC	264.41	398.02	1.505	344	0.017	316.189	426.473	1.349	398.02	264.41	900.7	751.3	413.1521337	280.61443	439.7947088	351.7628732	DC1320T1	0.885714286	0.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.019	344	0	0	NA	10qD3	chr10-4453448-130453386	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.088394329	sgMsh2	autochthonous
chr1	131349496	131349496	CA	C	ENSMUST00000097588.8	5	ENSMUSG00000026425	FS	C/X	338	Srgap2	ENSMUST00000097588.8:c.1012del	ENSMUSP00000095195.2:p.Cys338AlafsTer4	H-2-Kb	9	5	7	MYNNVFAPL	MYNNVFCPP	NetMHCpan	287.2	15329.5	53.376	220	0.159	438.566	11477.339	26.17	18129.08	287.95	15329.5	287.2	5118.11453	688.8267433	7625.178243	589.1827186	DC1320T1	0.571428571	0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.15	220	11	0	0	1qE4	chr1-4839315-194950953	3	2	1	0.807	3.754432835	POOR GOF (78.9%)	1	0.697849969	sgMsh2	autochthonous
chr10	129046874	129046874	T	G	ENSMUST00000216460.1	5	ENSMUSG00000056853	missense	N/T	63	Olfr765	ENSMUST00000216460.1:c.188A>C	ENSMUSP00000150725.1:p.Asn63Thr	H-2-Kb	9	7	5	FFLRTFSFL	FFLRNFSFL	NetMHC	290.8	237.11	0.815	344	0.017	487.956	511.744	1.049	237.11	290.8	480.1	417.3	543.3879457	558.6116644	628.4200023	807.6998459	DC1320T1	1.028571429	1.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.019	344	0	0	NA	10qD3	chr10-4453448-130453386	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.088394329	sgMsh2	autochthonous
chr17	13825961	13825961	C	T	ENSMUST00000139666.7	2	ENSMUSG00000068036	missense	A/V	399	Afdn	ENSMUST00000139666.7:c.1196C>T	ENSMUSP00000118318.1:p.Ala399Val	H-2-Kb	9	11	1	VYYSYHTYE	AYYSYHTYE	SMM	65.48	194.585	2.972	260	0.015	212.22	700.729	3.302	1208.46	347.66	1189.5	537.9	194.5852873	65.48020042	211.9580913	76.78033453	DC1320T1	-1.728571429	-0.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.022	260	1	0	0	17qA1	chr17-3170973-94834206	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.102351329	sgMsh2	autochthonous
chr15	26409319	26409319	G	T	ENSMUST00000140840.7	2	ENSMUSG00000022269	missense	G/V	368	44266	ENSMUST00000140840.7:c.1103G>T	ENSMUSP00000118729.1:p.Gly368Val	H-2-Kb	9	10	2	CVYVLLHLF	CGYVLLHLF	SMM	196.386	413.152	2.104	225	0.093	392.193	763.96	1.948	782.76	374.89	867.3	1748.8	413.1521337	196.3857628	745.1607995	409.4963169	DC1320T1	1.985714286	2.185714286	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.094	225	0	0	NA	15qB1	chr15-3341105-103103068	5	3	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.437319314	sgMsh2	autochthonous
chr4	117044583	117044583	GA	G	ENSMUST00000106448.8	5	ENSMUSG00000028683	FS	K/X	148	Eif2b3	ENSMUST00000106448.8:c.450del	ENSMUSP00000102056.2:p.Lys150AsnfsTer58	H-2-Kb	9	54	0	LGYISTQAL	NA	NetMHCpan	237.6	NA	NA	212	0.108	484.339	NA	NA	NA	380.85	NA	237.6	NA	638.4251688	NA	587.8276359	DC1320T1	0.542857143	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1085	212	36	0	0	4qD1	chr4-5799947-156200568	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.504778144	sgMsh2	autochthonous
chr17	14954832	14954832	C	T	ENSMUST00000024657.11	1	ENSMUSG00000023883	missense	R/H	217	Phf10	ENSMUST00000024657.11:c.650G>A	ENSMUSP00000024657.5:p.Arg217His	H-2-Db	9	4	8	NSNLNREHM	NSNLNRERM	NetMHC	135.16	618.18	4.574	137	0.044	147.113	439.269	2.986	618.18	135.16	921.9	266.5	223.6763154	144.7504758	260.3574444	149.4754949	DC1320T2	-1.785714286	-1.785714286	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;Vardict	3	0.041	137	96	3	0.03125	17qA2	chr17-3170973-94834206	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.249158837	sgMsh2	autochthonous
chr16	39024975	39024975	C	T	ENSMUST00000023478.7	1	ENSMUSG00000022790	missense	A/V	356	Igsf11	ENSMUST00000023478.7:c.1067C>T	ENSMUSP00000023478.7:p.Ala356Val	H-2-Db	9	8	4	SIYVNGNHL	SIYANGNHL	NetMHCpan	138.4	197.5	1.427	164	0.049	403.806	635.184	1.573	491.31	313.79	197.5	138.4	882.307559	500.7488954	779.0583738	493.8215065	DC1320T2	-0.557142857	-0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.057	164	0	0	NA	16qB4	chr16-3948854-96819699	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.346391554	sgMsh2	autochthonous
chr15	84292838	84292838	C	T	ENSMUST00000023072.6	1	ENSMUSG00000022438	missense	H/Y	193	Parvb	ENSMUST00000023072.6:c.577C>T	ENSMUSP00000023072.6:p.His193Tyr	H-2-Db	9	8	4	LAMYFRAPI	LAMHFRAPI	NetMHCpan	326.9	467.7	1.431	53	0.094	355.3	417.331	1.175	494.93	563.43	467.7	326.9	366.9610755	355.3202835	330.803427	355.2793781	DC1320T2	0.514285714	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.122	53	8	1	0.125	15qE2	chr15-3327923-103525164	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.741399467	sgMsh2	autochthonous
chr4	43024983	43024983	T	C	ENSMUST00000098109.8	1	ENSMUSG00000028454	missense	T/A	39	Pigo	ENSMUST00000098109.8:c.115A>G	ENSMUSP00000095713.2:p.Thr39Ala	H-2-Kb	8	6	6	SGFLLARL	SGFLLTRL	NetMHC	5.57	14.9	2.675	80	0.2	11.03	27.147	2.461	14.9	5.57	19.4	10.1	35.54184757	12.43769779	34.89313575	11.96024291	DC1320T2	1.585714286	1.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.213	80	6	2	0.333333333	4qA5	chr4-3552014-156233518	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	1	sgMsh2	autochthonous
chr3	19610496	19610496	TA	T	ENSMUST00000119133.1	1	ENSMUSG00000082766	FS	L/X	66	1700064H15Rik	ENSMUST00000119133.1:c.197del	ENSMUSP00000113751.1:p.Leu66TyrfsTer35	H-2-Kb	8	6	6	SNFFFYHV	SNFFFLPC	NetMHCpan	5.2	33.3	6.404	235	0.145	7.009	50.59	7.217	125.59	5.61	33.3	5.2	41.37518989	8.408915726	59.80534499	11.03417837	DC1320T2	0.657142857	0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1447	235	0	0	NA	3qA2	chr3-3792373-159911278	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.879348385	sgMsh2	autochthonous
chr17	58092342	58092342	A	G	ENSMUST00000076038.6	2	ENSMUSG00000038048	missense	T/A	397	Cntnap5c	ENSMUST00000076038.6:c.1189A>G	ENSMUSP00000075416.5:p.Thr397Ala	H-2-Kb	8	5	7	VSFQFRAW	VSFQFRTW	SMM	6.695	11.136	1.663	340	0.065	11.482	17.526	1.526	14.41	9.85	199.2	141.2	11.13627636	6.694836882	20.6414404	13.11414557	DC1320T2	-0.328571429	0.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.069	340	0	0	NA	17qD	chr17-3170973-94834206	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.419316092	sgMsh2	autochthonous
chr4	87227046	87227046	GA	G	ENSMUST00000107158.8	1	ENSMUSG00000037996	FS	F/X	257	Slc24a2	ENSMUST00000107158.8:c.770del	ENSMUSP00000102776.2:p.Phe257SerfsTer15	H-2-Kb	8	8	4	ITFSWITL	NA	NetMHCpan	11.9	NA	NA	186	0.204	15.738	NA	NA	NA	20.76	NA	11.9	NA	17.12931516	NA	14.34630303	DC1320T2	1.142857143	1.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.215	186	0	0	NA	4qC4	chr4-3552014-156233518	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	1	sgMsh2	autochthonous
chr5	123499514	123499514	T	C	ENSMUST00000094327.9	1	ENSMUSG00000063409	missense	L/P	248	Lrrc43	ENSMUST00000094327.9:c.743T>C	ENSMUSP00000091885.3:p.Leu248Pro	H-2-Kb	8	6	6	STLRHPRL	STLRHLRL	NetMHC	23.37	21.04	0.9	104	0.125	38.929	42.52	1.092	21.04	23.37	45.8	50.2	39.24099402	34.73281635	47.39581548	43.12608157	DC1320T2	-0.985714286	-0.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.137	104	0	0	NA	5qF	chr5-3673201-150478141	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.83255514	sgMsh2	autochthonous
chr17	87718632	87718666	TTCGTCAGACCGGGGTGATTGTACTCATGGCCCAAA	T	ENSMUST00000024967.13	1	ENSMUSG00000024151	FS	IRQTGVIVLMAQI/IX	679-691	Msh2	ENSMUST00000024967.13:c.2040_2074del	ENSMUSP00000024967.7:p.Gln681ValfsTer6	H-2-Kb	8	10	4	YIRVFCAL	NA	NetMHC	44.86	NA	NA	44	0.523	54.628	NA	NA	NA	44.86	NA	131.1	NA	49.17450535	NA	60.08139392	DC1320T2	2.157142857	2.157142857	FALSE	FALSE	FALSE	1	FALSE	0	Strelka2;Vardict	2	0.5227	44	7	0	0	17qE4	chr17-3170973-94834206	5	3	2	0.835	5.074332421	RARE KARYOTYPE	3	1	sgMsh2	autochthonous
chr15	84292838	84292838	C	T	ENSMUST00000023072.6	1	ENSMUSG00000022438	missense	H/Y	193	Parvb	ENSMUST00000023072.6:c.577C>T	ENSMUSP00000023072.6:p.His193Tyr	H-2-Kb	8	9	3	AMYFRAPI	AMHFRAPI	NetMHCpan	31.9	355.3	11.138	53	0.094	149.369	1641.829	10.992	714.8	46.54	355.3	31.9	3713.128679	315.3116375	2568.857419	252.1970487	DC1320T2	0.514285714	0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.122	53	8	1	0.125	15qE2	chr15-3327923-103525164	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.741399467	sgMsh2	autochthonous
chr3	19610496	19610496	TA	T	ENSMUST00000119133.1	1	ENSMUSG00000082766	FS	L/X	66	1700064H15Rik	ENSMUST00000119133.1:c.197del	ENSMUSP00000113751.1:p.Leu66TyrfsTer35	H-2-Kb	8	8	4	FFFYHVPL	NA	SMM	29.905	NA	NA	235	0.145	57.835	NA	NA	NA	93.67	NA	79.8	NA	29.90473787	NA	35.87071224	DC1320T2	1.071428571	1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1447	235	0	0	NA	3qA2	chr3-3792373-159911278	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.879348385	sgMsh2	autochthonous
chr1	66934518	66934518	C	T	ENSMUST00000119429.7	1	ENSMUSG00000061816	missense	D/N	10	Myl1	ENSMUST00000119429.7:c.28G>A	ENSMUSP00000112861.1:p.Asp10Asn	H-2-Kb	8	9	2	ANFKEAFL	ADFKEAFL	NetMHCpan	66	4823.1	73.077	181	0.028	89.964	2740.182	30.459	9978.02	141.59	4823.1	66	657.2642338	99.25216755	458.9231861	80.67519058	DC1320T2	0.042857143	0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.031	181	0	0	NA	1qC3	chr1-4867294-195062457	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.188388389	sgMsh2	autochthonous
chr5	143517192	143517192	T	C	ENSMUST00000100489.3	1	ENSMUSG00000001847	missense	T/A	25	Rac1	ENSMUST00000100489.3:c.73A>G	ENSMUSP00000098058.3:p.Thr25Ala	H-2-Kb	8	7	5	ISYTANAF	ISYTTNAF	NetMHCpan	123.8	170.3	1.376	199	0.126	203.02	265.838	1.309	251.3	173.37	170.3	123.8	343.3523309	233.7437461	280.3754606	232.6697911	DC1320T2	0.014285714	0.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.122	199	275	49	0.178181818	5qG2	chr5-3673201-150478141	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.741399467	sgMsh2	autochthonous
chr9	38524047	38524047	G	GT	ENSMUST00000216496.1	5	ENSMUSG00000062621	FS	C/CX	105	Olfr911-ps1	ENSMUST00000216496.1:c.321dup	ENSMUSP00000150446.1:p.Ala108CysfsTer4	H-2-Kb	8	9	6	FFCFFCHL	FFCFFAIC	SMM	63.788	1290.446	20.23	400	0.233	181.85	4102.874	22.562	6403.81	295.35	9462.6	305.1	1290.446488	63.788149	1801.938647	68.3502331	DC1320T2	2	2	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;Vardict	3	0.227	400	0	0	NA	9qA5.1	chr9-3342997-124127224	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	1	sgMsh2	autochthonous
chr7	46166011	46166011	T	C	ENSMUST00000033123.7	1	ENSMUSG00000040136	missense	I/V	307	Abcc8	ENSMUST00000033123.7:c.919A>G	ENSMUSP00000033123.6:p.Ile307Val	H-2-Kb	8	5	7	LSSTFRVL	LSSTFRIL	SMMPMBEC	225.289	411.851	1.828	41	0.098	252.018	361.481	1.434	328.74	299.68	270.2	260.4	394.2212222	243.6351806	411.8508816	225.2890066	DC1320T2	0.571428571	0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.127	41	0	0	NA	7qB3	chr7-4055649-144915099	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.771784692	sgMsh2	autochthonous
chr6	41446058	41446058	G	A	ENSMUST00000095999.6	1	ENSMUSG00000071517	missense	A/V	3	Gm10334	ENSMUST00000095999.6:c.8C>T	ENSMUSP00000093698.5:p.Ala3Val	H-2-Kb	8	3	1	VFLILALV	AFLILALV	SMM	195.317	735.766	3.767	276	0.025	278.609	1110.391	3.985	1358.32	305.6	3004.1	983.7	735.7664827	195.3169797	862.4620612	251.6170116	DC1320T2	3.528571429	3.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.033	276	0	0	NA	6qB1	chr6-3494310-113068119	6	3	3	0.835	5.074332421	RARE KARYOTYPE	1	0.200542479	sgMsh2	autochthonous
chr3	19610496	19610496	TA	T	ENSMUST00000119133.1	1	ENSMUSG00000082766	FS	L/X	66	1700064H15Rik	ENSMUST00000119133.1:c.197del	ENSMUSP00000113751.1:p.Leu66TyrfsTer35	H-2-Kb	8	37	0	SILQIRGL	NA	SMMPMBEC	366.218	NA	NA	235	0.145	381.856	NA	NA	NA	374.9	NA	398.6	NA	388.8123042	NA	366.2182643	DC1320T2	1.171428571	1.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1447	235	0	0	NA	3qA2	chr3-3792373-159911278	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.879348385	sgMsh2	autochthonous
chr4	84957050	84957050	TA	T	ENSMUST00000169371.8	5	ENSMUSG00000038070	FS	I/X	240	Cntln	ENSMUST00000169371.8:c.725del	ENSMUSP00000130491.2:p.Asn242ThrfsTer17	H-2-Kb	8	19	0	RDYEHAAL	NA	SMM	64.974	NA	NA	106	0.094	286.455	NA	NA	NA	487.06	NA	567.9	NA	64.97405923	NA	85.8499408	DC1320T2	-0.585714286	-0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.098	106	6	0	0	4qC4	chr4-3552014-156233518	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.595550392	sgMsh2	autochthonous
chr3	19610496	19610496	TA	T	ENSMUST00000119133.1	1	ENSMUSG00000082766	FS	L/X	66	1700064H15Rik	ENSMUST00000119133.1:c.197del	ENSMUSP00000113751.1:p.Leu66TyrfsTer35	H-2-Kb	9	5	7	SSNFFFYHV	SSNFFFLPC	NetMHC	22.43	478.67	21.341	235	0.145	72.353	364.562	5.039	478.67	22.43	239.6	26.1	411.2538721	118.6069123	317.8703353	150.0548372	DC1320T2	0.657142857	0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1447	235	0	0	NA	3qA2	chr3-3792373-159911278	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.879348385	sgMsh2	autochthonous
chr15	84292838	84292838	C	T	ENSMUST00000023072.6	1	ENSMUSG00000022438	missense	H/Y	193	Parvb	ENSMUST00000023072.6:c.577C>T	ENSMUSP00000023072.6:p.His193Tyr	H-2-Kb	9	8	4	LAMYFRAPI	LAMHFRAPI	NetMHCpan	26.6	33.4	1.256	53	0.094	107.74	128.976	1.197	43.54	35.49	33.4	26.6	241.0515897	180.3474475	214.4124503	179.9906727	DC1320T2	0.514285714	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.122	53	8	1	0.125	15qE2	chr15-3327923-103525164	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.741399467	sgMsh2	autochthonous
chr9	38524047	38524047	G	GT	ENSMUST00000216496.1	5	ENSMUSG00000062621	FS	C/CX	105	Olfr911-ps1	ENSMUST00000216496.1:c.321dup	ENSMUSP00000150446.1:p.Ala108CysfsTer4	H-2-Kb	9	8	7	YFFCFFCHL	YFFCFFAIC	SMM	40.097	375.933	9.376	400	0.233	53.979	646.296	11.973	916.66	58.04	2964.1	78.1	375.9326101	40.09682638	323.0353127	49.91717511	DC1320T2	2	2.128571429	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;Vardict	3	0.227	400	0	0	NA	9qA5.1	chr9-3342997-124127224	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	1	sgMsh2	autochthonous
chr7	46166011	46166011	T	C	ENSMUST00000033123.7	1	ENSMUSG00000040136	missense	I/V	307	Abcc8	ENSMUST00000033123.7:c.919A>G	ENSMUSP00000033123.6:p.Ile307Val	H-2-Kb	9	7	5	STFRVLADL	STFRILADL	NetMHC	68.11	61.69	0.906	41	0.098	265.532	218.595	0.823	61.69	68.11	68	87.2	448.8590645	553.4902819	369.1900603	443.8640791	DC1320T2	1.2	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.127	41	0	0	NA	7qB3	chr7-4055649-144915099	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.771784692	sgMsh2	autochthonous
chr16	39024975	39024975	C	T	ENSMUST00000023478.7	1	ENSMUSG00000022790	missense	A/V	356	Igsf11	ENSMUST00000023478.7:c.1067C>T	ENSMUSP00000023478.7:p.Ala356Val	H-2-Kb	9	8	4	SIYVNGNHL	SIYANGNHL	NetMHC	100.2	185.51	1.851	164	0.049	154.937	239	1.543	185.51	100.2	151.9	124.9	292.4893114	184.9737069	354.201177	258.3747087	DC1320T2	-0.557142857	-0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.057	164	0	0	NA	16qB4	chr16-3948854-96819699	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.346391554	sgMsh2	autochthonous
chr14	50281941	50281941	CA	C	ENSMUST00000213701.1	5	ENSMUSG00000091873	FS	L/X	104	Olfr732	ENSMUST00000213701.1:c.311del	ENSMUSP00000148984.1:p.Leu104CysfsTer14	H-2-Kb	9	6	6	TQLFFCTSL	TQLFFLHFL	NetMHCpan	50.6	93.2	1.842	212	0.09	239.819	490.185	2.044	430.69	118.02	93.2	50.6	549.6800816	435.622196	563.9622051	361.6179668	DC1320T2	2.028571429	2.028571429	FALSE	FALSE	FALSE	1	FALSE	0	Strelka2;Vardict	2	0.0896	212	0	0	NA	14qC1	chr14-3072210-123592557	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.544503215	sgMsh2	autochthonous
chr5	123499514	123499514	T	C	ENSMUST00000094327.9	1	ENSMUSG00000063409	missense	L/P	248	Lrrc43	ENSMUST00000094327.9:c.743T>C	ENSMUSP00000091885.3:p.Leu248Pro	H-2-Kb	9	5	7	LSTLRHPRL	LSTLRHLRL	NetMHC	140.4	179.74	1.28	104	0.125	212.691	252.05	1.185	179.74	140.4	365.2	307.2	280.61443	233.4049166	223.4858341	191.9773533	DC1320T2	-0.985714286	-0.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.137	104	0	0	NA	5qF	chr5-3673201-150478141	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.83255514	sgMsh2	autochthonous
chr4	43024983	43024983	T	C	ENSMUST00000098109.8	1	ENSMUSG00000028454	missense	T/A	39	Pigo	ENSMUST00000098109.8:c.115A>G	ENSMUSP00000095713.2:p.Thr39Ala	H-2-Kb	9	5	7	TSGFLLARL	TSGFLLTRL	NetMHC	169.32	339.1	2.003	80	0.2	297.662	401.02	1.347	339.1	169.32	647.1	346.2	455.1033161	340.4944207	346.9365057	254.8296748	DC1320T2	1.585714286	1.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.213	80	6	2	0.333333333	4qA5	chr4-3552014-156233518	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	1	sgMsh2	autochthonous
chr15	84292838	84292838	C	T	ENSMUST00000023072.6	1	ENSMUSG00000022438	missense	H/Y	193	Parvb	ENSMUST00000023072.6:c.577C>T	ENSMUSP00000023072.6:p.His193Tyr	H-2-Kb	9	6	6	VSLAMYFRA	VSLAMHFRA	NetMHC	189	751.69	3.977	53	0.094	227.187	762.084	3.354	751.69	189	766.9	217.1	859.2311238	245.5330734	757.2686885	237.2739171	DC1320T2	0.9	1.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.122	53	8	1	0.125	15qE2	chr15-3327923-103525164	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.741399467	sgMsh2	autochthonous
chr6	143012091	143012091	G	A	ENSMUST00000203187.2	1	ENSMUSG00000030279	missense	R/C	990	C2cd5	ENSMUST00000203187.2:c.2968C>T	ENSMUSP00000145373.1:p.Arg990Cys	H-2-Kb	9	7	5	VVFVCDSDL	VVFVRDSDL	SMMPMBEC	184.608	65.501	0.355	208	0.091	210.577	94.844	0.45	119.2	225.22	167	566	70.48715793	195.9340881	65.50131214	184.6077801	DC1320T2	0.785714286	1.942857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.095	208	39	4	0.102564103	6qG3	chr6-113104747-145247059	7	4	3	0.835	5.074332421	RARE KARYOTYPE	1	0.577319257	sgMsh2	autochthonous
chr3	19610496	19610496	TA	T	ENSMUST00000119133.1	1	ENSMUSG00000082766	FS	L/X	66	1700064H15Rik	ENSMUST00000119133.1:c.197del	ENSMUSP00000113751.1:p.Leu66TyrfsTer35	H-2-Kb	9	7	5	NFFFYHVPL	NA	NetMHCpan	66.3	NA	NA	235	0.145	144.894	NA	NA	NA	225.48	NA	66.3	NA	159.9963223	NA	129.7926202	DC1320T2	1.071428571	1.071428571	FALSE	FALSE	FALSE	0	TRUE	0	Strelka2;Vardict	2	0.1447	235	0	0	NA	3qA2	chr3-3792373-159911278	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.879348385	sgMsh2	autochthonous
chr3	19610496	19610496	TA	T	ENSMUST00000119133.1	1	ENSMUSG00000082766	FS	L/X	66	1700064H15Rik	ENSMUST00000119133.1:c.197del	ENSMUSP00000113751.1:p.Leu66TyrfsTer35	H-2-Kb	9	8	4	FFFYHVPLI	NA	NetMHC	288.55	NA	NA	235	0.145	319.083	NA	NA	NA	288.55	NA	476.1	NA	300.6837791	NA	337.4815227	DC1320T2	1.314285714	1.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1447	235	0	0	NA	3qA2	chr3-3792373-159911278	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.879348385	sgMsh2	autochthonous
chr1	66934518	66934518	C	T	ENSMUST00000119429.7	1	ENSMUSG00000061816	missense	D/N	10	Myl1	ENSMUST00000119429.7:c.28G>A	ENSMUSP00000112861.1:p.Asp10Asn	H-2-Kb	9	8	3	IANFKEAFL	IADFKEAFL	SMMPMBEC	346.937	476.705	1.374	181	0.028	386.766	709.846	1.835	845.43	367.92	2008.6	844.9	574.2618953	405.6112574	476.7053215	346.9365057	DC1320T2	0.042857143	0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.031	181	0	0	NA	1qC3	chr1-4867294-195062457	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.188388389	sgMsh2	autochthonous
chr1	66934518	66934518	C	T	ENSMUST00000119429.7	1	ENSMUSG00000061816	missense	D/N	10	Myl1	ENSMUST00000119429.7:c.28G>A	ENSMUSP00000112861.1:p.Asp10Asn	H-2-Kb	9	9	2	ANFKEAFLL	ADFKEAFLL	NetMHCpan	136	4651.2	34.2	181	0.028	444.189	3590.977	8.084	7613.33	456.75	4651.2	136	2178.261422	431.6283877	2530.754397	611.2938126	DC1320T2	1.085714286	1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.031	181	0	0	NA	1qC3	chr1-4867294-195062457	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.188388389	sgMsh2	autochthonous
chr10	82867172	82867172	CT	C	ENSMUST00000211623.1	NA	ENSMUSG00000109864	FS	F/X	156	Eid3	ENSMUST00000211623.1:c.471del	ENSMUSP00000147261.1:p.Phe157LeufsTer19	H-2-Kb	9	7	6	TDMNFLIPL	TDMNFFNPI	SMMPMBEC	279.415	262.573	0.94	156	0.051	311.336	286.576	0.92	310.58	595.07	195.3	285.3	327.4236157	337.3727491	262.57296	279.4151821	DC1320T2	1.671428571	1.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.052	156	1	0	0	10qC1	chr10-4453448-130389076	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.31600633	sgMsh2	autochthonous
chr3	19610496	19610496	TA	T	ENSMUST00000119133.1	1	ENSMUSG00000082766	FS	L/X	66	1700064H15Rik	ENSMUST00000119133.1:c.197del	ENSMUSP00000113751.1:p.Leu66TyrfsTer35	H-2-Kb	9	6	6	SNFFFYHVP	SNFFFLPCS	SMM	70.976	124.483	1.754	235	0.145	172.607	334.011	1.935	989.9	1207.48	464.2	222.4	124.4829868	70.97575157	203.8215031	122.8146005	DC1320T2	0.928571429	0.928571429	FALSE	FALSE	TRUE	0	FALSE	0	Strelka2;Vardict	2	0.1447	235	0	0	NA	3qA2	chr3-3792373-159911278	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.879348385	sgMsh2	autochthonous
chr3	19610496	19610496	TA	T	ENSMUST00000119133.1	1	ENSMUSG00000082766	FS	L/X	66	1700064H15Rik	ENSMUST00000119133.1:c.197del	ENSMUSP00000113751.1:p.Leu66TyrfsTer35	H-2-Kb	10	6	6	SNFFFYHVPL	SNFFFLPCSF	NetMHCpan	5.7	87.1	15.281	235	0.145	307.974	277.579	0.901	160.4	11.54	87.1	5.7	394.7571456	604.407716	481.7924611	722.5368477	DC1320T2	1.071428571	1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1447	235	0	0	NA	3qA2	chr3-3792373-159911278	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.879348385	sgMsh2	autochthonous
chrX	136457628	136457628	C	A	ENSMUST00000113108.7	1	ENSMUSG00000057439	missense	Q/H	80	Kir3dl2	ENSMUST00000113108.7:c.240G>T	ENSMUSP00000108732.1:p.Gln80His	H-2-Kb	8	9	3	KSHVFGPV	KSQVFGPV	NetMHC	20.7	36.62	1.769	176	0.068	55.955	84.1	1.503	36.62	20.7	135.8	53.6	82.74466462	72.2337231	85.45549615	58.30959165	DC1320T2	0.742857143	0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.072	176	0	0	NA	XqF1	NA	NA	NA	NA	0.835	5.074332421	RARE KARYOTYPE	NA	NA	sgMsh2	autochthonous
chr14	52490757	52490757	A	T	ENSMUST00000206062.3	2	ENSMUSG00000059887	missense	L/Q	69	Olfr1507	ENSMUST00000206062.3:c.206T>A	ENSMUSP00000146152.3:p.Leu69Gln	H-2-Db	9	6	6	FFLSNQSFI	FFLSNLSFI	SMM	36.528	33.855	0.927	360	0.039	57.32	50.126	0.874	48.78	58.59	199.9	180.4	33.85478032	36.52750425	51.47187632	56.04927508	DC1638T10	0.357142857	0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.037	360	0	0	NA	14qC2	chr14-3072210-123348696	4	2	2	0.835	3.991800846	NA	1	0.176882193	sgMsh2	autochthonous
chr19	27800176	27800176	T	A	ENSMUST00000165566.7	5	ENSMUSG00000040929	missense	T/S	516	Rfx3	ENSMUST00000165566.7:c.1546A>T	ENSMUSP00000126313.1:p.Thr516Ser	H-2-Db	9	6	6	AVLQNSSQI	AVLQNTSQI	NetMHC	148.91	97.9	0.657	172	0.023	158.757	133.369	0.84	97.9	148.91	151.3	149.8	127.2389276	168.8962473	139.4986485	167.7142637	DC1638T10	-0.542857143	0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.032	172	4	0	0	19qC1	chr19-3804329-61225035	4	2	2	0.835	3.991800846	NA	1	0.152979194	sgMsh2	autochthonous
chr7	104021892	104021892	C	T	ENSMUST00000218535.1	5	ENSMUSG00000066262	missense	R/H	142	Olfr640	ENSMUST00000218535.1:c.425G>A	ENSMUSP00000151356.1:p.Arg142His	H-2-Db	9	5	7	TVLTNSHIL	TVLTNSRIL	NetMHCpan	127.9	921.4	7.204	180	0.028	443.774	1054.41	2.376	4624.7	402.74	921.4	127.9	1008.370194	506.5472944	1100.449202	484.8082482	DC1638T10	0.557142857	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.031	180	0	0	NA	7qE3	chr7-4477867-143880977	4	2	2	0.835	3.991800846	NA	1	0.148198594	sgMsh2	autochthonous
chr1	98466674	98466674	C	A	ENSMUST00000027575.12	1	ENSMUSG00000026336	missense	P/Q	361	Slco6d1	ENSMUST00000027575.12:c.1082C>A	ENSMUSP00000027575.6:p.Pro361Gln	H-2-Db	9	6	6	CLIRNQLVL	CLIRNPLVL	NetMHCpan	276	325.5	1.179	166	0.03	381.192	520.113	1.364	771.46	570.8	325.5	276	521.9393015	386.9189495	518.2866232	375.4654675	DC1638T10	0.685714286	0.685714286	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.038	166	0	0	NA	1qD	chr1-6770919-195062457	4	2	2	0.835	3.991800846	NA	1	0.181662793	sgMsh2	autochthonous
chr17	57509009	57509009	T	C	ENSMUST00000165781.2	5	ENSMUSG00000090655	missense	K/R	782	Vmn2r120	ENSMUST00000165781.2:c.2345A>G	ENSMUSP00000129296.1:p.Lys782Arg	H-2-Kb	8	11	1	RFLTFSML	KFLTFSML	SMM	38.792	38.971	1.005	292	0.045	43.703	44.658	1.022	41.81	39.35	77.2	82.2	38.97086091	38.79180607	47.50507412	48.05515695	DC1638T10	1.942857143	1.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.044	292	0	0	NA	17qD	chr17-3077483-90208269	4	2	2	0.835	3.991800846	NA	1	0.210346392	sgMsh2	autochthonous
chr8	77599666	77599666	A	G	ENSMUST00000034030.14	1	ENSMUSG00000031617	missense	V/A	257	Tmem184c	ENSMUST00000034030.14:c.770T>C	ENSMUSP00000034030.8:p.Val257Ala	H-2-Kb	8	11	1	ASFWQAVL	VSFWQAVL	NetMHCpan	39.6	12.8	0.323	230	0.03	50.391	13.64	0.271	14.48	65.2	12.8	39.6	11.05961477	41.66198901	17.2480499	59.12075887	DC1638T10	1.057142857	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.036	230	76	4	0.052631579	8qC1	chr8-3192924-126969919	4	2	2	0.835	3.991800846	NA	1	0.172101593	sgMsh2	autochthonous
chr13	27851681	27851681	T	C	ENSMUST00000054932.12	5	ENSMUSG00000062551	missense	I/T	12	Prl2c1	ENSMUST00000054932.12:c.35T>C	ENSMUSP00000053446.5:p.Ile12Thr	H-2-Kb	8	8	4	SSWTLLLL	SSWILLLL	NetMHC	80.74	96.2	1.191	388	0.034	97.136	127.44	1.312	96.2	80.74	137.3	81.1	129.6402918	121.8260042	125.2391179	113.172263	DC1638T10	1.828571429	1.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.037	388	0	0	NA	13qA3.1	chr13-3554284-119495179	4	2	2	0.835	3.991800846	NA	1	0.176882193	sgMsh2	autochthonous
chr14	50186734	50186734	A	G	ENSMUST00000051453.1	NA	ENSMUSG00000109835	missense	I/T	162	Olfr730	ENSMUST00000051453.1:c.485T>C	ENSMUSP00000060325.1:p.Ile162Thr	H-2-Kb	8	7	5	MSQVTFAL	MSQVIFAL	NetMHC	86.76	265.37	3.059	325	0.015	324.422	344.553	1.062	265.37	86.76	274.4	304.7	421.444121	344.1438398	414.7056956	383.4775994	DC1638T10	1.085714286	1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.02	325	0	0	NA	14qC1	chr14-3072210-123348696	4	2	2	0.835	3.991800846	NA	1	0.095611996	sgMsh2	autochthonous
chr13	81523776	81523776	GA	G	ENSMUST00000095585.10	1	ENSMUSG00000069170	FS	F/X	2233	Adgrv1	ENSMUST00000095585.10:c.6699del	ENSMUSP00000093245.4:p.Gln2234ArgfsTer7	H-2-Kb	8	9	4	FGFRILNL	NA	NetMHCpan	40.1	NA	NA	102	0.059	117.818	NA	NA	NA	113.53	NA	40.1	NA	143.7937467	NA	122.1068422	DC1638T10	0.928571429	0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.062	102	0	0	NA	13qC3	chr13-3554284-119495179	4	2	2	0.835	3.991800846	NA	1	0.296397189	sgMsh2	autochthonous
chr11	109976543	109976543	T	C	ENSMUST00000020948.14	1	ENSMUSG00000020620	missense	I/V	230	Abca8b	ENSMUST00000020948.14:c.688A>G	ENSMUSP00000020948.8:p.Ile230Val	H-2-Kb	8	9	3	CIVSFSPI	CIISFSPI	NetMHCpan	97.5	43.7	0.448	183	0.044	191.521	95.191	0.497	51.47	117.74	43.7	97.5	138.9120754	265.3016799	155.5034397	286.246378	DC1638T10	1.828571429	1.828571429	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.053	183	1	0	0	11qE1	chr11-69600961-121956809	4	2	2	0.835	3.991800846	NA	1	0.25337179	sgMsh2	autochthonous
chr19	13453704	13453704	A	C	ENSMUST00000096201.3	5	ENSMUSG00000095189	missense	I/S	271	Olfr1472	ENSMUST00000096201.3:c.812T>G	ENSMUSP00000093915.3:p.Ile271Ser	H-2-Kb	8	11	1	SASVFYTM	IASVFYTM	NetMHCpan	77.6	40.6	0.523	312	0.029	340.892	186.193	0.546	78.12	127.49	40.6	77.6	294.2659418	554.2937734	303.9065077	637.88149	DC1638T10	1.128571429	1.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.035	312	0	0	NA	19qA	chr19-3804329-61225035	4	2	2	0.835	3.991800846	NA	1	0.167320994	sgMsh2	autochthonous
chr6	50591805	50591805	T	C	ENSMUST00000031852.4	1	ENSMUSG00000029828	missense	E/G	48	4921507P07Rik	ENSMUST00000031852.4:c.143A>G	ENSMUSP00000031852.4:p.Glu48Gly	H-2-Kb	8	5	7	SQARYQGL	SQARYQEL	NetMHC	130.88	368.2	2.813	169	0.047	181.909	368.054	2.023	368.2	130.88	331.6	199.1	367.908651	164.7175978	542.9252	236.9954455	DC1638T10	-1.085714286	-1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.048	169	10	1	0.1	6qB2.3	chr6-3494310-149550203	5	3	2	0.835	3.991800846	NA	1	0.229468791	sgMsh2	autochthonous
chr5	104961229	104961229	C	T	ENSMUST00000031239.12	1	ENSMUSG00000029299	missense	V/I	401	Abcg3	ENSMUST00000031239.12:c.1201G>A	ENSMUSP00000031239.6:p.Val401Ile	H-2-Kb	8	11	1	IGTAFRVL	VGTAFRVL	SMM	91.567	85.85	0.938	234	0.038	119.874	111.602	0.931	113.37	132.66	175.7	169.7	85.8499408	91.56721386	109.8348092	107.0878008	DC1638T10	1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.045	234	1	0	0	5qE5	chr5-3344487-150478141	4	3	1	0.835	3.991800846	NA	1	0.215126992	sgMsh2	autochthonous
chr11	73965486	73965486	A	G	ENSMUST00000216291.1	5	ENSMUSG00000057050	missense	R/G	293	Olfr397	ENSMUST00000216291.1:c.877A>G	ENSMUSP00000150172.1:p.Arg293Gly	H-2-Kb	8	6	6	FIYSFGNQ	FIYSFRNQ	SMMPMBEC	46.424	46.424	1	121	0.066	123.869	108.901	0.879	133.13	157.01	1944.7	2692.3	84.67203545	90.7277206	46.42372661	46.42372661	DC1638T10	-0.314285714	0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.068	121	0	0	NA	11qB4	chr11-69600961-121956809	4	2	2	0.835	3.991800846	NA	1	0.325080787	sgMsh2	autochthonous
chr11	115879751	115879751	A	C	ENSMUST00000093911.10	5	ENSMUSG00000034427	missense	M/L	1519	Myo15b	ENSMUST00000093911.10:c.4555A>C	ENSMUSP00000091439.5:p.Met1519Leu	H-2-Kb	8	7	5	INRVLLRL	INRVMLRL	NetMHCpan	113.9	100.6	0.883	80	0.037	133.305	126.745	0.951	139.45	161.01	100.6	113.9	119.6024291	123.8055176	133.88749	142.8038776	DC1638T10	0.442857143	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.05	80	6	2	0.333333333	11qE2	chr11-69600961-121956809	4	2	2	0.835	3.991800846	NA	1	0.239029991	sgMsh2	autochthonous
chr17	20472151	20472151	T	C	ENSMUST00000167314.2	5	ENSMUSG00000091805	missense	T/A	148	Vmn2r108	ENSMUST00000167314.2:c.442A>G	ENSMUSP00000130373.1:p.Thr148Ala	H-2-Kb	8	6	6	KSNFAAAL	KSNFATAL	NetMHC	219.46	914.76	4.168	223	0.022	238.93	717.941	3.005	914.76	219.46	575	257.7	629.1294278	220.1608027	806.7519058	276.528565	DC1638T10	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.024	223	0	0	NA	17qA3.2	chr17-3077483-90208269	4	2	2	0.835	3.991800846	NA	1	0.114734396	sgMsh2	autochthonous
chr2	119139420	119139420	GT	G	ENSMUST00000094695.11	1	ENSMUSG00000070730	FS	T/X	387	Rmdn3	ENSMUST00000094695.11:c.1159del	ENSMUSP00000092283.5:p.Thr387ArgfsTer46	H-2-Kb	8	37	0	YSQDFQKL	NA	SMM	227.898	NA	NA	181	0.199	263.57	NA	NA	NA	233.55	NA	302.9	NA	227.8977303	NA	293.5891489	DC1638T10	-1.228571429	-1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1989	181	38	0	0	2qE5	chr2-4925576-137100395	4	2	2	0.835	3.991800846	NA	1	0.950861303	sgMsh2	autochthonous
chr8	33610743	33610743	A	G	ENSMUST00000009774.10	1	ENSMUSG00000009630	missense	D/G	64	Ppp2cb	ENSMUST00000009774.10:c.191A>G	ENSMUSP00000009774.9:p.Asp64Gly	H-2-Kb	8	5	7	VHGQFHGL	VHGQFHDL	SMMPMBEC	116.075	316.767	2.729	286	0.031	213.761	955.084	4.468	1742.17	310.91	1593.4	483.2	316.7670499	116.611129	316.7670499	116.0753495	DC1638T10	-0.585714286	-0.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.039	286	623	29	0.046548957	8qA3	chr8-3192924-126969919	4	2	2	0.835	3.991800846	NA	1	0.186443393	sgMsh2	autochthonous
chr11	59589898	59589898	A	G	ENSMUST00000215626.1	5	ENSMUSG00000048919	missense	Y/H	64	Olfr223	ENSMUST00000215626.1:c.190T>C	ENSMUSP00000149991.1:p.Tyr64His	H-2-Kb	8	10	2	MHFFLDNL	MYFFLDNL	SMM	130.539	210.252	1.611	126	0.048	186.194	231.251	1.242	252.25	361.78	82	185	210.2519343	130.5389154	272.1071791	187.3872337	DC1638T10	0.428571429	0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.06	126	0	0	NA	11qB1.3	chr11-3133205-69579350	4	2	2	0.835	3.991800846	NA	1	0.286835989	sgMsh2	autochthonous
chr11	59589898	59589898	A	G	ENSMUST00000215626.1	5	ENSMUSG00000048919	missense	Y/H	64	Olfr223	ENSMUST00000215626.1:c.190T>C	ENSMUSP00000149991.1:p.Tyr64His	H-2-Kb	8	7	5	QTPMHFFL	QTPMYFFL	NetMHCpan	321.4	78.4	0.244	126	0.048	443.602	98.864	0.223	61.82	425.1	78.4	321.4	119.3273511	462.1042896	155.8619122	674.1243274	DC1638T10	0.828571429	0.828571429	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.06	126	0	0	NA	11qB1.3	chr11-3133205-69579350	4	2	2	0.835	3.991800846	NA	1	0.286835989	sgMsh2	autochthonous
chr19	13453704	13453704	A	C	ENSMUST00000096201.3	5	ENSMUSG00000095189	missense	I/S	271	Olfr1472	ENSMUST00000096201.3:c.812T>G	ENSMUSP00000093915.3:p.Ile271Ser	H-2-Kb	9	11	1	SASVFYTMV	IASVFYTMV	NetMHC	30.34	28.51	0.94	312	0.029	102.698	76.64	0.746	28.51	30.34	25.1	42.8	124.7699497	162.5960534	130.0918231	198.2668013	DC1638T10	1.471428571	1.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.035	312	0	0	NA	19qA	chr19-3804329-61225035	4	2	2	0.835	3.991800846	NA	1	0.167320994	sgMsh2	autochthonous
chr11	6624121	6624121	C	A	ENSMUST00000189268.6	1	ENSMUSG00000000384	missense	V/L	34	Tbrg4	ENSMUST00000189268.6:c.100G>T	ENSMUSP00000140835.1:p.Val34Leu	H-2-Kb	9	3	9	VGRLRLAGL	VGRLRLAGV	NetMHC	33.93	117.31	3.457	64	0.266	129.598	290.774	2.244	117.31	33.93	422.3	136.3	278.6826939	123.9110394	302.8656361	135.2851103	DC1638T10	0.542857143	0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.278	64	50	12	0.24	11qA1	chr11-3133205-69579350	4	2	2	0.835	3.991800846	NA	1	1	sgMsh2	autochthonous
chr6	50591805	50591805	T	C	ENSMUST00000031852.4	1	ENSMUSG00000029828	missense	E/G	48	4921507P07Rik	ENSMUST00000031852.4:c.143A>G	ENSMUSP00000031852.4:p.Glu48Gly	H-2-Kb	9	4	8	ASQARYQGL	ASQARYQEL	NetMHC	35	86.18	2.462	169	0.047	176.77	205.095	1.16	86.18	35	253.5	175.2	212.3782315	184.9737069	197.8108003	178.3405083	DC1638T10	-1.085714286	-1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.048	169	10	1	0.1	6qB2.3	chr6-3494310-149550203	5	3	2	0.835	3.991800846	NA	1	0.229468791	sgMsh2	autochthonous
chr15	25964321	25964321	T	A	ENSMUST00000022881.14	5	ENSMUSG00000022270	missense	S/T	169	Retreg1	ENSMUST00000022881.14:c.505T>A	ENSMUSP00000022881.7:p.Ser169Thr	H-2-Kb	9	4	8	SMFLQEMTL	SMFLQEMSL	NetMHC	84.15	77.24	0.918	242	0.037	86.567	81.78	0.945	77.24	84.15	73	84.6	86.31971544	88.53398242	137.8002483	146.6391721	DC1638T10	0.657142857	0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.04	242	84	1	0.011904762	15qB1	chr15-3341105-103439122	4	2	2	0.835	3.991800846	NA	1	0.191223993	sgMsh2	autochthonous
chr17	37659803	37659803	T	G	ENSMUST00000215414.1	5	ENSMUSG00000095286	missense	I/L	177	Olfr117	ENSMUST00000215414.1:c.529A>C	ENSMUSP00000150204.1:p.Ile177Leu	H-2-Kb	9	6	6	KIYHFLCEV	KIYHFICEV	NetMHCpan	46.6	55.6	1.193	303	0.066	120.471	179.549	1.49	138.75	102.55	55.6	46.6	220.3484501	138.3916859	282.6506575	193.7536979	DC1638T10	0.757142857	0.8	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;MuSe;Vardict	3	0.066	303	0	0	NA	17qB1	chr17-3077483-90208269	4	2	2	0.835	3.991800846	NA	1	0.315519588	sgMsh2	autochthonous
chr17	57509009	57509009	T	C	ENSMUST00000165781.2	5	ENSMUSG00000090655	missense	K/R	782	Vmn2r120	ENSMUST00000165781.2:c.2345A>G	ENSMUSP00000129296.1:p.Lys782Arg	H-2-Kb	9	10	2	ARFLTFSML	AKFLTFSML	NetMHC	116.49	123.1	1.057	292	0.045	257.216	262.417	1.02	123.1	116.49	279.3	427	245.5330734	214.3433431	319.3375581	300.0889473	DC1638T10	1.942857143	1.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.044	292	0	0	NA	17qD	chr17-3077483-90208269	4	2	2	0.835	3.991800846	NA	1	0.210346392	sgMsh2	autochthonous
chr13	27851681	27851681	T	C	ENSMUST00000054932.12	5	ENSMUSG00000062551	missense	I/T	12	Prl2c1	ENSMUST00000054932.12:c.35T>C	ENSMUSP00000053446.5:p.Ile12Thr	H-2-Kb	9	8	4	SSWTLLLLL	SSWILLLLL	NetMHC	131.73	131.39	0.997	388	0.034	177.294	176.283	0.994	131.39	131.73	440.4	151.3	174.2248102	203.287184	178.3405083	208.5691158	DC1638T10	2.485714286	2.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.037	388	0	0	NA	13qA3.1	chr13-3554284-119495179	4	2	2	0.835	3.991800846	NA	1	0.176882193	sgMsh2	autochthonous
chr8	77599666	77599666	A	G	ENSMUST00000034030.14	1	ENSMUSG00000031617	missense	V/A	257	Tmem184c	ENSMUST00000034030.14:c.770T>C	ENSMUSP00000034030.8:p.Val257Ala	H-2-Kb	9	9	3	VFASFWQAV	VFVSFWQAV	SMM	160.365	144.248	0.899	230	0.03	216.017	174.505	0.808	92.88	168.25	208.1	297.2	144.2480663	160.3651519	204.7623004	263.7849417	DC1638T10	0.771428571	0.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.036	230	76	4	0.052631579	8qC1	chr8-3192924-126969919	4	2	2	0.835	3.991800846	NA	1	0.172101593	sgMsh2	autochthonous
chr6	60977157	60977157	A	C	ENSMUST00000129603.3	1	ENSMUSG00000054641	missense	Q/H	807	Mmrn1	ENSMUST00000129603.3:c.2421A>C	ENSMUSP00000119609.1:p.Gln807His	H-2-Kb	9	4	8	LNFQNIYHL	LNFQNIYQL	NetMHCpan	100.8	168.4	1.671	198	0.03	249.084	283.829	1.139	267.57	184.76	168.4	100.8	378.5384504	313.4079437	300.0889473	317.8703353	DC1638T10	-0.057142857	-0.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.034	198	0	0	NA	6qB3	chr6-3494310-149550203	5	3	2	0.835	3.991800846	NA	1	0.162540394	sgMsh2	autochthonous
chr11	115879751	115879751	A	C	ENSMUST00000093911.10	5	ENSMUSG00000034427	missense	M/L	1519	Myo15b	ENSMUST00000093911.10:c.4555A>C	ENSMUSP00000091439.5:p.Met1519Leu	H-2-Kb	9	7	5	INRVLLRLL	INRVMLRLL	NetMHC	186.06	126.22	0.678	80	0.037	246.157	167.832	0.682	126.22	186.06	154.9	211.7	180.7631913	280.61443	286.5827198	406.6773641	DC1638T10	1.485714286	1.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.05	80	6	2	0.333333333	11qE2	chr11-69600961-121956809	4	2	2	0.835	3.991800846	NA	1	0.239029991	sgMsh2	autochthonous
chr2	119139420	119139420	GT	G	ENSMUST00000094695.11	1	ENSMUSG00000070730	FS	T/X	387	Rmdn3	ENSMUST00000094695.11:c.1159del	ENSMUSP00000092283.5:p.Thr387ArgfsTer46	H-2-Kb	9	45	0	DGYIFLSAI	NA	NetMHC	187.49	NA	NA	181	0.199	309.473	NA	NA	NA	187.49	NA	212.4	NA	406.5462879	NA	510.7989549	DC1638T10	2.185714286	2.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1989	181	38	0	0	2qE5	chr2-4925576-137100395	4	2	2	0.835	3.991800846	NA	1	0.950861303	sgMsh2	autochthonous
chr14	50186734	50186734	A	G	ENSMUST00000051453.1	NA	ENSMUSG00000109835	missense	I/T	162	Olfr730	ENSMUST00000051453.1:c.485T>C	ENSMUSP00000060325.1:p.Ile162Thr	H-2-Kb	9	10	2	VTFALTLPF	VIFALTLPF	NetMHCpan	98	149.7	1.528	325	0.015	195.534	171.709	0.878	269	247.2	149.7	98	162.5960534	192.8013187	180.8214719	198.2668013	DC1638T10	1.814285714	2.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.02	325	0	0	NA	14qC1	chr14-3072210-123348696	4	2	2	0.835	3.991800846	NA	1	0.095611996	sgMsh2	autochthonous
chr8	33610743	33610743	A	G	ENSMUST00000009774.10	1	ENSMUSG00000009630	missense	D/G	64	Ppp2cb	ENSMUST00000009774.10:c.191A>G	ENSMUSP00000009774.9:p.Asp64Gly	H-2-Kb	9	5	7	VHGQFHGLM	VHGQFHDLM	SMMPMBEC	302.169	522.697	1.73	286	0.031	325.871	667.309	2.048	782.4	315.92	1569.6	475.4	552.2172896	335.8226621	522.696991	302.1690645	DC1638T10	0.142857143	0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.039	286	623	29	0.046548957	8qA3	chr8-3192924-126969919	4	2	2	0.835	3.991800846	NA	1	0.186443393	sgMsh2	autochthonous
chr11	107492045	107492045	T	C	ENSMUST00000021063.12	1	ENSMUSG00000020720	missense	M/T	230	Psmd12	ENSMUST00000021063.12:c.689T>C	ENSMUSP00000021063.6:p.Met230Thr	H-2-Kb	9	6	6	KYYNLTIQL	KYYNLMIQL	NetMHC	339.19	247.75	0.73	124	0.056	381.035	262.328	0.688	247.75	339.19	276.2	416	334.2796971	410.3080144	248.4562923	351.7628732	DC1638T10	0.442857143	0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.067	124	576	44	0.076388889	11qE1	chr11-69600961-121956809	4	2	2	0.835	3.991800846	NA	1	0.320300188	sgMsh2	autochthonous
chr13	81523776	81523776	GA	G	ENSMUST00000095585.10	1	ENSMUSG00000069170	FS	F/X	2233	Adgrv1	ENSMUST00000095585.10:c.6699del	ENSMUSP00000093245.4:p.Gln2234ArgfsTer7	H-2-Kb	9	9	4	FGFRILNLL	NA	NetMHCpan	255.6	NA	NA	102	0.059	490.5	NA	NA	NA	390.65	NA	255.6	NA	590.3505878	NA	681.1613539	DC1638T10	1.528571429	1.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.062	102	0	0	NA	13qC3	chr13-3554284-119495179	4	2	2	0.835	3.991800846	NA	1	0.296397189	sgMsh2	autochthonous
chr14	76111931	76111931	T	A	ENSMUST00000022586.1	1	ENSMUSG00000022009	missense	H/Q	134	Nufip1	ENSMUST00000022586.1:c.402T>A	ENSMUSP00000022586.1:p.His134Gln	H-2-Kb	9	9	3	VTQSYFPRS	VTHSYFPRS	SMM	181.598	89.353	0.492	142	0.085	383.51	211.833	0.552	263.25	439.49	296.9	705.1	89.35317727	181.5975563	160.4168559	327.5291816	DC1638T10	-1.385714286	-0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.086	142	91	5	0.054945055	14qD3	chr14-3072210-123348696	4	2	2	0.835	3.991800846	NA	1	0.411131584	sgMsh2	autochthonous
chr11	59589898	59589898	A	G	ENSMUST00000215626.1	5	ENSMUSG00000048919	missense	Y/H	64	Olfr223	ENSMUST00000215626.1:c.190T>C	ENSMUSP00000149991.1:p.Tyr64His	H-2-Kb	9	9	3	PMHFFLDNL	PMYFFLDNL	SMM	213.85	37.593	0.176	126	0.048	472.175	78.746	0.167	101.87	642.18	145.1	1254.1	37.59326101	213.850367	55.62243536	302.1690645	DC1638T10	0.428571429	0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.06	126	0	0	NA	11qB1.3	chr11-3133205-69579350	4	2	2	0.835	3.991800846	NA	1	0.286835989	sgMsh2	autochthonous
chr9	40006683	40006683	C	T	ENSMUST00000216463.2	5	ENSMUSG00000060254	missense	G/R	89	Olfr980	ENSMUST00000216463.2:c.265G>A	ENSMUSP00000150496.1:p.Gly89Arg	H-2-Kb	9	11	1	RAISFHSCV	GAISFHSCV	NetMHC	146.91	811.1	5.521	318	0.028	353.996	733.057	2.071	811.1	146.91	861.7	167.1	602.7122243	540.8913049	655.0131214	629.8686601	DC1638T3	1.314285714	1.314285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.024	318	0	0	NA	9qA5.1	chr9-3409793-123664738	4	2	2	0.834	5.446745474	RARE KARYOTYPE	1	0.156740877	sgMsh2	autochthonous
chr2	167208292	167208292	C	A	ENSMUST00000018113.7	1	ENSMUSG00000017969	missense	A/S	306	Ptgis	ENSMUST00000018113.7:c.916G>T	ENSMUSP00000018113.7:p.Ala306Ser	H-2-Db	9	4	8	FLLKNPESL	FLLKNPEAL	NetMHCpan	157.1	149.2	0.95	84	0.476	254.195	190.183	0.748	225.7	291.82	149.2	157.1	206.3573775	272.0320034	174.0083144	236.3578332	DC1638T4	-0.814285714	-0.3	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.462	84	9	0	0	2qH3	chr2-4925576-181511691	3	2	1	0.732	2.734567279	NA	2	1	sgMsh2	autochthonous
chr15	85537538	85537538	GC	G	ENSMUST00000229191.1	NA	ENSMUSG00000022382	FS	A/X	305	Wnt7b	ENSMUST00000229191.1:c.913del	ENSMUSP00000155014.1:p.Ala305ProfsTer177	H-2-Db	9	117	0	ASKVNAMVV	NA	NetMHC	359.55	NA	NA	41	0.268	412.733	NA	NA	NA	359.55	NA	765.4	NA	420.358661	NA	405.1072354	DC1638T4	1.271428571	1.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.307	41	35	8	0.228571429	15qE2	chr15-3280572-103525164	3	2	1	0.732	2.734567279	NA	1	1	sgMsh2	autochthonous
chr15	85537538	85537538	GC	G	ENSMUST00000229191.1	NA	ENSMUSG00000022382	FS	A/X	305	Wnt7b	ENSMUST00000229191.1:c.913del	ENSMUSP00000155014.1:p.Ala305ProfsTer177	H-2-Db	9	121	0	NAMVVWYPM	NA	NetMHCpan	143.8	NA	NA	41	0.268	193.919	NA	NA	NA	418.01	NA	143.8	NA	175.2346559	NA	212.6032994	DC1638T4	1.2	1.2	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;Vardict	3	0.307	41	35	8	0.228571429	15qE2	chr15-3280572-103525164	3	2	1	0.732	2.734567279	NA	1	1	sgMsh2	autochthonous
chr3	19610496	19610496	TA	T	ENSMUST00000119133.1	1	ENSMUSG00000082766	FS	L/X	66	1700064H15Rik	ENSMUST00000119133.1:c.197del	ENSMUSP00000113751.1:p.Leu66TyrfsTer35	H-2-Kb	8	6	6	SNFFFYHV	SNFFFLPC	NetMHCpan	5.2	33.3	6.404	255	0.204	7.009	50.59	7.217	125.59	5.61	33.3	5.2	41.37518989	8.408915726	59.80534499	11.03417837	DC1638T4	0.657142857	0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2039	255	0	0	NA	3qA2	chr3-3792373-159911278	3	2	1	0.732	2.734567279	NA	1	0.761718946	sgMsh2	autochthonous
chrX	134238171	134238171	TG	T	ENSMUST00000113252.7	1	ENSMUSG00000067369	FS	H/X	443	Trmt2b	ENSMUST00000113252.7:c.1327del	ENSMUSP00000108878.1:p.His443MetfsTer22	H-2-Kb	8	17	0	TSLNYAVL	NA	NetMHC	5.97	NA	NA	95	0.063	11.569	NA	NA	NA	5.97	NA	13.3	NA	11.36946424	NA	11.76901185	DC1638T4	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0632	95	30	3	0.1	XqE3	NA	NA	NA	NA	0.732	2.734567279	NA	NA	NA	sgMsh2	autochthonous
chr5	8812659	8812659	G	A	ENSMUST00000009058.9	1	ENSMUSG00000028970	missense	A/T	114	Abcb1b	ENSMUST00000009058.9:c.340G>A	ENSMUSP00000009058.5:p.Ala114Thr	H-2-Kb	8	10	2	YTYYYTGI	YAYYYTGI	NetMHCpan	8.6	7.1	0.826	249	0.165	35.515	53.271	1.5	11.32	10.81	7.1	8.6	105.8619769	68.50779666	95.22259222	60.21989584	DC1638T4	-0.171428571	-0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.167	249	5	1	0.2	5qA1	chr5-3344373-150758621	3	2	1	0.732	2.734567279	NA	1	0.623869857	sgMsh2	autochthonous
chr12	110544079	110544079	C	T	ENSMUST00000084985.10	2	ENSMUSG00000017843	missense	A/V	100	Ppp2r5c	ENSMUST00000084985.10:c.299C>T	ENSMUSP00000082053.3:p.Ala100Val	H-2-Kb	8	11	1	VVNMFRTL	AVNMFRTL	NetMHC	19.96	112.48	5.635	238	0.021	30.558	120.024	3.928	112.48	19.96	95.3	23.9	155.5034397	41.2800296	127.5674869	37.21688324	DC1638T4	0.571428571	0.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.028	238	311	2	0.006430868	12qF1	chr12-3237715-119465464	3	2	1	0.732	2.734567279	NA	1	0.104600934	sgMsh2	autochthonous
chr5	8812659	8812659	G	A	ENSMUST00000009058.9	1	ENSMUSG00000028970	missense	A/T	114	Abcb1b	ENSMUST00000009058.9:c.340G>A	ENSMUSP00000009058.5:p.Ala114Thr	H-2-Kb	8	8	4	AIYTYYYT	AIYAYYYT	NetMHC	60.23	68.98	1.145	249	0.165	87.157	91.826	1.054	68.98	60.23	158.6	131.5	101.0974031	99.0238939	82.55435717	75.29046857	DC1638T4	-0.3	0.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.167	249	5	1	0.2	5qA1	chr5-3344373-150758621	3	2	1	0.732	2.734567279	NA	1	0.623869857	sgMsh2	autochthonous
chr3	19610496	19610496	TA	T	ENSMUST00000119133.1	1	ENSMUSG00000082766	FS	L/X	66	1700064H15Rik	ENSMUST00000119133.1:c.197del	ENSMUSP00000113751.1:p.Leu66TyrfsTer35	H-2-Kb	8	8	4	FFFYHVPL	NA	SMM	29.905	NA	NA	255	0.204	57.835	NA	NA	NA	93.67	NA	79.8	NA	29.90473787	NA	35.87071224	DC1638T4	1.071428571	1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2039	255	0	0	NA	3qA2	chr3-3792373-159911278	3	2	1	0.732	2.734567279	NA	1	0.761718946	sgMsh2	autochthonous
chr3	92340397	92340397	CA	C	ENSMUST00000047477.3	1	ENSMUSG00000042212	FS	P/X	48	Sprr2d	ENSMUST00000047477.3:c.147del	ENSMUSP00000039821.3:p.Lys49AsnfsTer153	H-2-Kb	8	16	0	LVLSHVPL	NA	NetMHCpan	109.4	NA	NA	204	0.039	134.148	NA	NA	NA	134.1	NA	109.4	NA	153.7234066	NA	134.1961326	DC1638T4	1.485714286	1.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.043	204	0	0	NA	3qF1	chr3-3792373-159911278	3	2	1	0.732	2.734567279	NA	1	0.160637149	sgMsh2	autochthonous
chr7	102125251	102125251	G	A	ENSMUST00000210682.1	5	ENSMUSG00000063550	missense	H/Y	1526	Nup98	ENSMUST00000210682.1:c.4576C>T	ENSMUSP00000148115.1:p.His1526Tyr	H-2-Kb	8	9	3	SWYLWEVL	SWHLWEVL	NetMHC	147.29	1548.04	10.51	83	0.241	200.549	1854.732	9.248	1548.04	147.29	1483.7	188.9	2778.049629	235.9065504	2161.424152	212.1973715	DC1638T4	0.742857143	0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.247	83	81	32	0.395061728	7qE2	chr7-10175819-142989150	3	2	1	0.732	2.734567279	NA	1	0.922729669	sgMsh2	autochthonous
chr1	21505815	21505815	GT	G	ENSMUST00000115300.7	1	ENSMUSG00000028033	FS	T/X	222	Kcnq5	ENSMUST00000115300.7:c.664del	ENSMUSP00000110955.1:p.Thr222LeufsTer46	H-2-Kb	8	4	8	IAVVSAKL	IAVVSAKT	NetMHC	162.89	9743.42	59.816	143	0.154	241.37	9164.207	37.967	9743.42	162.89	9912	215.6	8584.99408	301.8144301	5020.41941	267.1406633	DC1638T4	1.585714286	1.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.142	143	1	1	1	1qA4	chr1-4783928-193352278	4	2	2	0.732	2.734567279	NA	1	0.530476166	sgMsh2	autochthonous
chr3	55048471	55048471	G	T	ENSMUST00000197238.4	5	ENSMUSG00000027793	missense	N/K	301	Ccna1	ENSMUST00000197238.4:c.903C>A	ENSMUSP00000142692.1:p.Asn301Lys	H-2-Kb	8	11	1	KQFLLQYL	NQFLLQYL	NetMHCpan	164.7	567.5	3.446	148	0.162	192.454	611.161	3.176	1696.03	190.04	567.5	164.7	584.4400914	194.8677632	637.88149	220.1608027	DC1638T4	0.842857143	0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.178	148	0	0	NA	3qC	chr3-3792373-159911278	3	2	1	0.732	2.734567279	NA	1	0.664963082	sgMsh2	autochthonous
chr15	85537538	85537538	GC	G	ENSMUST00000229191.1	NA	ENSMUSG00000022382	FS	A/X	305	Wnt7b	ENSMUST00000229191.1:c.913del	ENSMUSP00000155014.1:p.Ala305ProfsTer177	H-2-Kb	8	76	0	AIILHILL	NA	SMM	200.327	NA	NA	41	0.268	236.9	NA	NA	NA	249.03	NA	365	NA	200.3272365	NA	224.7708563	DC1638T4	3.1	3.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.307	41	35	8	0.228571429	15qE2	chr15-3280572-103525164	3	2	1	0.732	2.734567279	NA	1	1	sgMsh2	autochthonous
chr3	66975487	66975487	G	A	ENSMUST00000029422.13	1	ENSMUSG00000027833	missense	A/V	220	Shox2	ENSMUST00000029422.13:c.659C>T	ENSMUSP00000029422.7:p.Ala220Val	H-2-Kb	8	9	3	RVVPYVNV	RVAPYVNV	NetMHCpan	158.4	300.3	1.896	64	0.047	299.386	623.905	2.084	911.72	253.04	300.3	158.4	513.7360001	345.7323355	734.0742668	378.2160895	DC1638T4	1.485714286	1.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.079	64	0	0	NA	3qE1	chr3-3792373-159911278	3	2	1	0.732	2.734567279	NA	1	0.295124064	sgMsh2	autochthonous
chr1	21505815	21505815	GT	G	ENSMUST00000115300.7	1	ENSMUSG00000028033	FS	T/X	222	Kcnq5	ENSMUST00000115300.7:c.664del	ENSMUSP00000110955.1:p.Thr222LeufsTer46	H-2-Kb	8	44	0	CSALWFML	NA	NetMHC	302.96	NA	NA	143	0.154	446.934	NA	NA	NA	302.96	NA	496	NA	397.8689062	NA	520.8827797	DC1638T4	1.771428571	1.771428571	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.142	143	1	1	1	1qA4	chr1-4783928-193352278	4	2	2	0.732	2.734567279	NA	1	0.530476166	sgMsh2	autochthonous
chr1	21505815	21505815	GT	G	ENSMUST00000115300.7	1	ENSMUSG00000028033	FS	T/X	222	Kcnq5	ENSMUST00000115300.7:c.664del	ENSMUSP00000110955.1:p.Thr222LeufsTer46	H-2-Kb	8	45	0	SALWFMLT	NA	NetMHCpan	320.2	NA	NA	143	0.154	496.247	NA	NA	NA	360.46	NA	320.2	NA	680.361923	NA	632.0333573	DC1638T4	1.785714286	1.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.142	143	1	1	1	1qA4	chr1-4783928-193352278	4	2	2	0.732	2.734567279	NA	1	0.530476166	sgMsh2	autochthonous
chr3	19610496	19610496	TA	T	ENSMUST00000119133.1	1	ENSMUSG00000082766	FS	L/X	66	1700064H15Rik	ENSMUST00000119133.1:c.197del	ENSMUSP00000113751.1:p.Leu66TyrfsTer35	H-2-Kb	8	37	0	SILQIRGL	NA	SMMPMBEC	366.218	NA	NA	255	0.204	381.856	NA	NA	NA	374.9	NA	398.6	NA	388.8123042	NA	366.2182643	DC1638T4	1.171428571	1.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2039	255	0	0	NA	3qA2	chr3-3792373-159911278	3	2	1	0.732	2.734567279	NA	1	0.761718946	sgMsh2	autochthonous
chr17	75348895	75348895	TC	T	ENSMUST00000135447.7	1	ENSMUSG00000001870	FS	L/X	968	Ltbp1	ENSMUST00000135447.7:c.2914del	ENSMUSP00000116890.1:p.His972ThrfsTer?	H-2-Kb	8	15	1	TSSCFICL	NA	SMMPMBEC	292.914	NA	NA	29	0.207	478.044	NA	NA	NA	725.74	NA	659.1	NA	296.9887511	NA	292.9139126	DC1638T4	2.071428571	2.071428571	FALSE	FALSE	FALSE	2	FALSE	0	Strelka2;Vardict	2	0.2069	29	0	0	NA	17qE2	chr17-3077483-94727405	3	2	1	0.732	2.734567279	NA	1	0.772926189	sgMsh2	autochthonous
chr3	19610496	19610496	TA	T	ENSMUST00000119133.1	1	ENSMUSG00000082766	FS	L/X	66	1700064H15Rik	ENSMUST00000119133.1:c.197del	ENSMUSP00000113751.1:p.Leu66TyrfsTer35	H-2-Kb	9	5	7	SSNFFFYHV	SSNFFFLPC	NetMHC	22.43	478.67	21.341	255	0.204	72.353	364.562	5.039	478.67	22.43	239.6	26.1	411.2538721	118.6069123	317.8703353	150.0548372	DC1638T4	0.657142857	0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2039	255	0	0	NA	3qA2	chr3-3792373-159911278	3	2	1	0.732	2.734567279	NA	1	0.761718946	sgMsh2	autochthonous
chr5	72343021	72343021	G	A	ENSMUST00000005352.9	1	ENSMUSG00000005220	missense	A/V	553	Corin	ENSMUST00000005352.9:c.1658C>T	ENSMUSP00000005352.3:p.Ala553Val	H-2-Kb	9	11	1	VSISWESSL	ASISWESSL	NetMHC	22.69	82.98	3.657	192	0.203	57.367	190.664	3.324	82.98	22.69	195.5	52.2	185.8275068	62.53310593	238.9186213	86.54659777	DC1638T4	0.214285714	0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.211	192	10	0	0	5qC3.2	chr5-3344373-150758621	3	2	1	0.732	2.734567279	NA	1	0.788242754	sgMsh2	autochthonous
chr12	110544079	110544079	C	T	ENSMUST00000084985.10	2	ENSMUSG00000017843	missense	A/V	100	Ppp2r5c	ENSMUST00000084985.10:c.299C>T	ENSMUSP00000082053.3:p.Ala100Val	H-2-Kb	9	10	2	FVVNMFRTL	FAVNMFRTL	NetMHC	98.52	82.54	0.838	238	0.021	288.744	254.206	0.88	82.54	98.52	129	150.8	379.4110717	426.6875784	427.809082	494.595317	DC1638T4	0.571428571	1.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.028	238	311	2	0.006430868	12qF1	chr12-3237715-119465464	3	2	1	0.732	2.734567279	NA	1	0.104600934	sgMsh2	autochthonous
chr12	110544079	110544079	C	T	ENSMUST00000084985.10	2	ENSMUSG00000017843	missense	A/V	100	Ppp2r5c	ENSMUST00000084985.10:c.299C>T	ENSMUSP00000082053.3:p.Ala100Val	H-2-Kb	9	6	6	AVHMFVVNM	AVHMFAVNM	NetMHCpan	81.5	67	0.822	238	0.021	271.495	310.27	1.143	115.75	115.18	67	81.5	504.7891366	468.9321403	552.3953321	427.809082	DC1638T4	1.185714286	2.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.028	238	311	2	0.006430868	12qF1	chr12-3237715-119465464	3	2	1	0.732	2.734567279	NA	1	0.104600934	sgMsh2	autochthonous
chr5	8812659	8812659	G	A	ENSMUST00000009058.9	1	ENSMUSG00000028970	missense	A/T	114	Abcb1b	ENSMUST00000009058.9:c.340G>A	ENSMUSP00000009058.5:p.Ala114Thr	H-2-Kb	9	9	3	IYTYYYTGI	IYAYYYTGI	NetMHC	135.59	103.66	0.765	249	0.165	163.311	112.375	0.688	103.66	135.59	85.1	156.7	121.0904798	176.2422384	128.0117987	169.9221522	DC1638T4	-0.171428571	-0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.167	249	5	1	0.2	5qA1	chr5-3344373-150758621	3	2	1	0.732	2.734567279	NA	1	0.623869857	sgMsh2	autochthonous
chr1	66416758	66416758	TA	T	ENSMUST00000114013.7	1	ENSMUSG00000015222	FS	K/X	1477	Map2	ENSMUST00000114013.7:c.4434del	ENSMUSP00000109646.1:p.Lys1478AsnfsTer15	H-2-Kb	9	11	2	KNQKFRPTL	NA	NetMHC	141.5	NA	NA	136	0.228	490.76	NA	NA	NA	141.5	NA	256.9	NA	724.6194716	NA	918.8613834	DC1638T4	-1.085714286	-1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.22	136	0	0	NA	1qC3	chr1-4783928-193352278	4	2	2	0.732	2.734567279	NA	1	0.821864483	sgMsh2	autochthonous
chr3	19610496	19610496	TA	T	ENSMUST00000119133.1	1	ENSMUSG00000082766	FS	L/X	66	1700064H15Rik	ENSMUST00000119133.1:c.197del	ENSMUSP00000113751.1:p.Leu66TyrfsTer35	H-2-Kb	9	7	5	NFFFYHVPL	NA	NetMHCpan	66.3	NA	NA	255	0.204	144.894	NA	NA	NA	225.48	NA	66.3	NA	159.9963223	NA	129.7926202	DC1638T4	1.071428571	1.071428571	FALSE	FALSE	FALSE	0	TRUE	0	Strelka2;Vardict	2	0.2039	255	0	0	NA	3qA2	chr3-3792373-159911278	3	2	1	0.732	2.734567279	NA	1	0.761718946	sgMsh2	autochthonous
chr17	17831158	17831158	G	A	ENSMUST00000172097.8	5	ENSMUSG00000080316	missense	R/H	52	Spaca6	ENSMUST00000172097.8:c.155G>A	ENSMUSP00000128732.2:p.Arg52His	H-2-Kb	9	6	6	TTYEEHLRV	TTYEERLRV	NetMHCpan	199.1	515.8	2.591	73	0.219	343.549	672.481	1.957	773.23	284.15	515.8	199.1	673.1471323	446.7967444	671.8154697	402.9489236	DC1638T4	-1.142857143	-1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	73	33	6	0.181818182	17qA3.2	chr17-3077483-94727405	3	2	1	0.732	2.734567279	NA	1	0.848014716	sgMsh2	autochthonous
chr3	19610496	19610496	TA	T	ENSMUST00000119133.1	1	ENSMUSG00000082766	FS	L/X	66	1700064H15Rik	ENSMUST00000119133.1:c.197del	ENSMUSP00000113751.1:p.Leu66TyrfsTer35	H-2-Kb	9	8	4	FFFYHVPLI	NA	NetMHC	288.55	NA	NA	255	0.204	319.083	NA	NA	NA	288.55	NA	476.1	NA	300.6837791	NA	337.4815227	DC1638T4	1.314285714	1.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2039	255	0	0	NA	3qA2	chr3-3792373-159911278	3	2	1	0.732	2.734567279	NA	1	0.761718946	sgMsh2	autochthonous
chr5	8812659	8812659	G	A	ENSMUST00000009058.9	1	ENSMUSG00000028970	missense	A/T	114	Abcb1b	ENSMUST00000009058.9:c.340G>A	ENSMUSP00000009058.5:p.Ala114Thr	H-2-Kb	9	8	4	AIYTYYYTG	AIYAYYYTG	SMMPMBEC	145.295	173.081	1.191	249	0.165	173.333	196.193	1.132	370.79	310.8	205.7	179.9	186.6852475	166.7669554	173.0812408	145.2947761	DC1638T4	-1	0.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.167	249	5	1	0.2	5qA1	chr5-3344373-150758621	3	2	1	0.732	2.734567279	NA	1	0.623869857	sgMsh2	autochthonous
chrX	134238171	134238171	TG	T	ENSMUST00000113252.7	1	ENSMUSG00000067369	FS	H/X	443	Trmt2b	ENSMUST00000113252.7:c.1327del	ENSMUSP00000108878.1:p.His443MetfsTer22	H-2-Kb	9	3	9	LVFVSCKPM	LVFVSCKPH	NetMHCpan	384.2	18487.2	48.119	95	0.063	455.671	9459.775	20.76	14891.36	469.66	18487.2	384.2	4028.190492	441.6823044	3583.026333	476.7053215	DC1638T4	0.728571429	1.828571429	FALSE	FALSE	FALSE	1	FALSE	0	Strelka2;Vardict	2	0.0632	95	30	3	0.1	XqE3	NA	NA	NA	NA	0.732	2.734567279	NA	NA	NA	sgMsh2	autochthonous
chrX	134238171	134238171	TG	T	ENSMUST00000113252.7	1	ENSMUSG00000067369	FS	H/X	443	Trmt2b	ENSMUST00000113252.7:c.1327del	ENSMUSP00000108878.1:p.His443MetfsTer22	H-2-Kb	9	19	0	LNYAVLQIL	NA	NetMHCpan	208.9	NA	NA	95	0.063	358.627	NA	NA	NA	492.01	NA	208.9	NA	342.0660715	NA	375.1889162	DC1638T4	1.9	1.9	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0632	95	30	3	0.1	XqE3	NA	NA	NA	NA	0.732	2.734567279	NA	NA	NA	sgMsh2	autochthonous
chr1	21505815	21505815	GT	G	ENSMUST00000115300.7	1	ENSMUSG00000028033	FS	T/X	222	Kcnq5	ENSMUST00000115300.7:c.664del	ENSMUSP00000110955.1:p.Thr222LeufsTer46	H-2-Kb	9	23	0	VSGSYRSCV	NA	SMM	341.279	NA	NA	143	0.154	433.898	NA	NA	NA	511.96	NA	1764.9	NA	341.2793414	NA	355.8360953	DC1638T4	-0.157142857	-0.157142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.142	143	1	1	1	1qA4	chr1-4783928-193352278	4	2	2	0.732	2.734567279	NA	1	0.530476166	sgMsh2	autochthonous
chr7	102125251	102125251	G	A	ENSMUST00000210682.1	5	ENSMUSG00000063550	missense	H/Y	1526	Nup98	ENSMUST00000210682.1:c.4576C>T	ENSMUSP00000148115.1:p.His1526Tyr	H-2-Kb	9	8	4	LSWYLWEVL	LSWHLWEVL	SMMPMBEC	283.302	337.482	1.191	83	0.241	398.186	537.012	1.349	956.65	611.13	502.4	368.7	571.6234016	427.6711949	337.4815227	283.3022345	DC1638T4	0.742857143	0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.247	83	81	32	0.395061728	7qE2	chr7-10175819-142989150	3	2	1	0.732	2.734567279	NA	1	0.922729669	sgMsh2	autochthonous
chr3	19610496	19610496	TA	T	ENSMUST00000119133.1	1	ENSMUSG00000082766	FS	L/X	66	1700064H15Rik	ENSMUST00000119133.1:c.197del	ENSMUSP00000113751.1:p.Leu66TyrfsTer35	H-2-Kb	9	6	6	SNFFFYHVP	SNFFFLPCS	SMM	70.976	124.483	1.754	255	0.204	172.607	334.011	1.935	989.9	1207.48	464.2	222.4	124.4829868	70.97575157	203.8215031	122.8146005	DC1638T4	0.928571429	0.928571429	FALSE	FALSE	TRUE	0	FALSE	0	Strelka2;Vardict	2	0.2039	255	0	0	NA	3qA2	chr3-3792373-159911278	3	2	1	0.732	2.734567279	NA	1	0.761718946	sgMsh2	autochthonous
chr3	19610496	19610496	TA	T	ENSMUST00000119133.1	1	ENSMUSG00000082766	FS	L/X	66	1700064H15Rik	ENSMUST00000119133.1:c.197del	ENSMUSP00000113751.1:p.Leu66TyrfsTer35	H-2-Kb	10	6	6	SNFFFYHVPL	SNFFFLPCSF	NetMHCpan	5.7	87.1	15.281	255	0.204	307.974	277.579	0.901	160.4	11.54	87.1	5.7	394.7571456	604.407716	481.7924611	722.5368477	DC1638T4	1.071428571	1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2039	255	0	0	NA	3qA2	chr3-3792373-159911278	3	2	1	0.732	2.734567279	NA	1	0.761718946	sgMsh2	autochthonous
chr11	11815374	11815374	AT	A	ENSMUST00000178704.7	1	ENSMUSG00000020182	FS	I/X	433	Ddc	ENSMUST00000178704.7:c.1297del	ENSMUSP00000136467.1:p.Ile433SerfsTer38	H-2-Db	9	24	0	YALLCALAL	NA	NetMHC	138.02	NA	NA	139	0.108	344.896	NA	NA	NA	138.02	NA	407.6	NA	352.0626876	NA	337.7302799	DC1638T5	3.042857143	3.042857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.112	139	0	0	NA	11qA1	chr11-3133205-69579350	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.538303123	sgMsh2	autochthonous
chr11	11815374	11815374	AT	A	ENSMUST00000178704.7	1	ENSMUSG00000020182	FS	I/X	433	Ddc	ENSMUST00000178704.7:c.1297del	ENSMUSP00000136467.1:p.Ile433SerfsTer38	H-2-Kb	8	20	0	TSLCYALL	NA	NetMHC	4.39	NA	NA	139	0.108	9.804	NA	NA	NA	4.39	NA	8.7	NA	10.90787117	NA	11.3433152	DC1638T5	1.942857143	1.942857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.112	139	0	0	NA	11qA1	chr11-3133205-69579350	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.538303123	sgMsh2	autochthonous
chr10	130418605	130418605	CA	C	ENSMUST00000171811.3	5	ENSMUSG00000092048	FS	C/X	737	Vmn2r85	ENSMUST00000171811.3:c.2209del	ENSMUSP00000128792.2:p.Cys737AlafsTer43	H-2-Kb	8	8	4	VIFATQAL	NA	NetMHC	31.45	NA	NA	347	0.023	50.993	NA	NA	NA	31.45	NA	54.7	NA	47.28680813	NA	60.77710368	DC1638T5	1.5	1.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.024	347	0	0	NA	10qD3	chr10-20103873-130453386	3	2	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.115350669	sgMsh2	autochthonous
chr10	129626038	129626038	T	G	ENSMUST00000204979.2	2	ENSMUSG00000095002	missense	S/R	8	Olfr798	ENSMUST00000204979.2:c.22A>C	ENSMUSP00000144716.1:p.Ser8Arg	H-2-Kb	8	6	3	SVREFILL	SVSEFILL	NetMHC	32.01	159.69	4.989	105	0.086	55.895	215.586	3.857	159.69	32.01	96.3	35.1	271.4813499	76.69022289	318.9627742	99.25216755	DC1638T5	1.585714286	1.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.093	105	0	0	NA	10qD3	chr10-20103873-130453386	3	2	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.446983843	sgMsh2	autochthonous
chr10	130418605	130418605	CA	C	ENSMUST00000171811.3	5	ENSMUSG00000092048	FS	C/X	737	Vmn2r85	ENSMUST00000171811.3:c.2209del	ENSMUSP00000128792.2:p.Cys737AlafsTer43	H-2-Kb	8	13	0	QALSFPSM	NA	NetMHC	93.77	NA	NA	347	0.023	273.188	NA	NA	NA	93.77	NA	143.9	NA	402.476011	NA	567.204934	DC1638T5	1.014285714	1.014285714	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.024	347	0	0	NA	10qD3	chr10-20103873-130453386	3	2	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.115350669	sgMsh2	autochthonous
chr11	61069596	61069596	T	A	ENSMUST00000041944.8	1	ENSMUSG00000042529	missense	I/N	240	Kcnj12	ENSMUST00000041944.8:c.719T>A	ENSMUSP00000041696.2:p.Ile240Asn	H-2-Kb	8	5	7	AAFLFSNE	AAFLFSIE	SMM	35.054	238.638	6.808	167	0.024	73.503	676.368	9.202	2281.46	106.85	1053	402.5	238.6382195	35.05419514	299.7367541	40.15503419	DC1638T5	0.485714286	1.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.032	167	0	0	NA	11qB2	chr11-3133205-69579350	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.153800892	sgMsh2	autochthonous
chr11	86722245	86722245	A	G	ENSMUST00000103186.10	1	ENSMUSG00000047126	missense	V/A	484	Cltc	ENSMUST00000103186.10:c.1451T>C	ENSMUSP00000099475.4:p.Val484Ala	H-2-Kb	8	4	8	SVYLRANA	SVYLRANV	NetMHC	121.72	11.04	0.091	143	0.028	304.285	45.725	0.15	11.04	121.72	32.6	325.6	60.08139392	358.7071224	58.84912366	282.9697428	DC1638T5	0.328571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.039	143	331	8	0.024169184	11qC	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.187444837	sgMsh2	autochthonous
chr10	128090048	128090048	T	G	ENSMUST00000026459.5	1	ENSMUSG00000025393	missense	F/V	507	Atp5b	ENSMUST00000026459.5:c.1519T>G	ENSMUSP00000026459.5:p.Phe507Val	H-2-Kb	8	10	2	AVYMVGPI	AFYMVGPI	NetMHCpan	131.7	452.1	3.433	155	0.039	218.628	356.561	1.631	337.51	140.95	452.1	131.7	375.6124682	419.5077612	324.1455024	296.3056959	DC1638T5	1.642857143	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.046	155	1754	55	0.031356899	10qD3	chr10-20103873-130453386	3	2	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.221088782	sgMsh2	autochthonous
chr1	40607773	40607773	A	G	ENSMUST00000027233.8	1	ENSMUSG00000026065	missense	R/G	476	Slc9a4	ENSMUST00000027233.8:c.1426A>G	ENSMUSP00000027233.7:p.Arg476Gly	H-2-Kb	8	6	6	IGPLVGYL	IGPLVRYL	NetMHCpan	184.7	332.6	1.801	139	0.058	296.698	309.753	1.044	267.56	285.97	332.6	184.7	286.906244	307.4255792	337.0854446	337.0854446	DC1638T5	1.157142857	1.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.067	139	9	0	0	1qB	chr1-4867294-195062457	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.322020618	sgMsh2	autochthonous
chr11	85214299	85214299	A	G	ENSMUST00000018625.9	1	ENSMUSG00000018481	missense	L/P	147	Appbp2	ENSMUST00000018625.9:c.440T>C	ENSMUSP00000018625.9:p.Leu147Pro	H-2-Kb	8	6	6	VFLSCPQL	VFLSCLQL	SMM	180.609	204.052	1.13	150	0.027	246.043	288.763	1.174	372.06	305.13	522.9	439.2	204.0515979	180.6092545	205.466016	186.956255	DC1638T5	1	1.057142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.035	150	73	0	0	11qC	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.168219726	sgMsh2	autochthonous
chr10	127715006	127715006	A	C	ENSMUST00000079590.6	1	ENSMUSG00000025401	missense	Q/P	629	Myo1a	ENSMUST00000079590.6:c.1886A>C	ENSMUSP00000078540.5:p.Gln629Pro	H-2-Kb	8	5	7	AGYAFRPG	AGYAFRQG	SMM	61.339	125.528	2.046	73	0.041	264.263	670.771	2.538	1666.22	519.45	1184.6	445.4	125.5278239	61.33946729	156.9422953	83.12659663	DC1638T5	-0.514285714	-0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.06	73	0	0	NA	10qD3	chr10-20103873-130453386	3	2	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.288376673	sgMsh2	autochthonous
chr11	80330582	80330582	T	C	ENSMUST00000017836.7	1	ENSMUSG00000017692	missense	V/A	182	Rhbdl3	ENSMUST00000017836.7:c.545T>C	ENSMUSP00000017836.7:p.Val182Ala	H-2-Kb	8	6	6	FLYNGALL	FLYNGVLL	SMMPMBEC	315.312	909.369	2.884	77	0.078	431.283	1158.447	2.686	2001.54	549.03	1145.4	457.3	1171.493815	405.2658414	909.3686959	315.3116375	DC1638T5	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.101	77	0	0	NA	11qB5	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.485434066	sgMsh2	autochthonous
chr1	16369825	16369825	AT	A	ENSMUST00000162751.7	1	ENSMUSG00000025920	FS	N/X	364	Stau2	ENSMUST00000162751.7:c.1091del	ENSMUSP00000124505.1:p.Asn364MetfsTer67	H-2-Kb	8	42	0	VVQSLGFL	NA	SMM	288.895	NA	NA	129	0.054	454.137	NA	NA	NA	667.04	NA	566.5	NA	288.8949831	NA	341.7747702	DC1638T5	1.414285714	1.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0543	129	40	0	0	1qA3	chr1-4867294-195062457	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.260980889	sgMsh2	autochthonous
chr10	130418605	130418605	CA	C	ENSMUST00000171811.3	5	ENSMUSG00000092048	FS	C/X	737	Vmn2r85	ENSMUST00000171811.3:c.2209del	ENSMUSP00000128792.2:p.Cys737AlafsTer43	H-2-Kb	8	33	0	ASLWLSWL	NA	SMM	312.421	NA	NA	347	0.023	407.641	NA	NA	NA	717.62	NA	457.4	NA	312.4208431	NA	357.8821189	DC1638T5	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.024	347	0	0	NA	10qD3	chr10-20103873-130453386	3	2	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.115350669	sgMsh2	autochthonous
chr11	75522202	75522202	A	G	ENSMUST00000042808.12	1	ENSMUSG00000038188	missense	I/V	425	Scarf1	ENSMUST00000042808.12:c.1273A>G	ENSMUSP00000044248.6:p.Ile425Val	H-2-Kb	8	11	1	VVGILVPL	IVGILVPL	SMMPMBEC	289.561	282.319	0.975	79	0.051	396.901	430.458	1.085	852.58	757.43	482.7	439.2	378.2160895	354.6010359	282.3189304	289.5609548	DC1638T5	2.642857143	2.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.063	79	0	0	NA	11qB5	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.302795506	sgMsh2	autochthonous
chr11	70640094	70640094	A	G	ENSMUST00000055184.6	5	ENSMUSG00000050675	missense	I/V	229	Gp1ba	ENSMUST00000055184.6:c.685A>G	ENSMUSP00000057563.6:p.Ile229Val	H-2-Kb	8	11	1	VLYFRHWL	ILYFRHWL	NetMHCpan	121.6	129.2	1.062	227	0.022	395.134	403.434	1.021	936.74	852.18	129.2	121.6	423.3894187	396.9538331	383.4775994	393.3145385	DC1638T5	0.071428571	0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.029	227	1	0	0	11qB3	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.139382059	sgMsh2	autochthonous
chr11	45984825	45984825	T	G	ENSMUST00000049038.3	1	ENSMUSG00000040489	missense	I/S	468	Sox30	ENSMUST00000049038.3:c.1403T>G	ENSMUSP00000037519.3:p.Ile468Ser	H-2-Kb	8	10	2	TSYPYRSP	TIYPYRSP	SMM	118.233	196.219	1.66	182	0.077	479.059	1016.863	2.123	1834.76	948.51	1767.2	805.1	196.218522	118.2333514	266.5262568	153.0171117	DC1638T5	-1.7	-1.571428571	FALSE	FALSE	TRUE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.094	182	0	0	NA	11qB1.1	chr11-3133205-69579350	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.451790121	sgMsh2	autochthonous
chr10	130418605	130418605	CA	C	ENSMUST00000171811.3	5	ENSMUSG00000092048	FS	C/X	737	Vmn2r85	ENSMUST00000171811.3:c.2209del	ENSMUSP00000128792.2:p.Cys737AlafsTer43	H-2-Kb	8	37	0	LSWLGTFL	NA	SMMPMBEC	307.426	NA	NA	347	0.023	420.694	NA	NA	NA	1101.66	NA	318.1	NA	523.2870654	NA	307.4255792	DC1638T5	1.085714286	1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.024	347	0	0	NA	10qD3	chr10-20103873-130453386	3	2	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.115350669	sgMsh2	autochthonous
chr10	78847735	78847735	T	C	ENSMUST00000205100.2	2	ENSMUSG00000051190	missense	Y/C	60	Olfr1356	ENSMUST00000205100.2:c.179A>G	ENSMUSP00000144815.1:p.Tyr60Cys	H-2-Kb	8	10	2	MCLFLSNL	MYLFLSNL	NetMHCpan	316.6	21.5	0.068	139	0.295	372.836	159.843	0.429	32.78	1118.45	21.5	316.6	286.906244	395.1299959	346.5293309	350.5419514	DC1638T5	1.771428571	1.771428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.298	139	0	0	NA	10qC1	chr10-20103873-130453386	3	2	1	0.82	3.941147861	POOR GOF (79.6%)	1	1	sgMsh2	autochthonous
chr1	73924957	73924957	T	C	ENSMUST00000169786.7	5	ENSMUSG00000055322	missense	Y/C	1513	Tns1	ENSMUST00000169786.7:c.4538A>G	ENSMUSP00000127715.1:p.Tyr1513Cys	H-2-Kb	9	7	5	VSPACYPGL	VSPAYYPGL	NetMHC	8.14	2.87	0.353	147	0.061	65.333	16.661	0.255	2.87	8.14	5	35.8	28.32109234	94.86587133	33.13217908	106.721028	DC1638T5	0.457142857	0.457142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.071	147	107	4	0.037383178	1qC3	chr1-4867294-195062457	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.341245729	sgMsh2	autochthonous
chr11	45984825	45984825	T	G	ENSMUST00000049038.3	1	ENSMUSG00000040489	missense	I/S	468	Sox30	ENSMUST00000049038.3:c.1403T>G	ENSMUSP00000037519.3:p.Ile468Ser	H-2-Kb	9	10	2	TSYPYRSPT	TIYPYRSPT	NetMHC	50.01	106.1	2.122	182	0.077	126.483	225.439	1.782	106.1	50.01	288.1	107	234.4822647	166.383402	216.3963843	145.9654263	DC1638T5	-1.685714286	-1.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.094	182	0	0	NA	11qB1.1	chr11-3133205-69579350	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.451790121	sgMsh2	autochthonous
chr10	130418605	130418605	CA	C	ENSMUST00000171811.3	5	ENSMUSG00000092048	FS	C/X	737	Vmn2r85	ENSMUST00000171811.3:c.2209del	ENSMUSP00000128792.2:p.Cys737AlafsTer43	H-2-Kb	9	13	0	QALSFPSML	NA	NetMHC	61.23	NA	NA	347	0.023	181.524	NA	NA	NA	61.23	NA	182.7	NA	180.3474475	NA	368.3409467	DC1638T5	1.3	1.3	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.024	347	0	0	NA	10qD3	chr10-20103873-130453386	3	2	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.115350669	sgMsh2	autochthonous
chr11	76966796	76966796	T	G	ENSMUST00000021197.9	1	ENSMUSG00000020840	missense	L/W	289	Blmh	ENSMUST00000021197.9:c.866T>G	ENSMUSP00000021197.3:p.Leu289Trp	H-2-Kb	9	6	6	YTVDYWSNM	YTVDYLSNM	NetMHCpan	78.4	128.3	1.636	210	0.071	177.782	283.934	1.597	143.14	81.88	128.3	78.4	424.7271271	301.3769268	443.8640791	273.6843727	DC1638T5	-0.557142857	-0.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.072	210	113	4	0.03539823	11qB5	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.346052007	sgMsh2	autochthonous
chr10	79978022	79978022	A	G	ENSMUST00000052885.13	1	ENSMUSG00000013858	missense	Y/H	411	Tmem259	ENSMUST00000052885.13:c.1231T>C	ENSMUSP00000056792.7:p.Tyr411His	H-2-Kb	9	5	7	AFYAYHHRF	AFYAYHYRF	NetMHCpan	76.8	118.3	1.54	79	0.063	122.443	114.523	0.935	80.53	103.55	118.3	76.8	110.9455787	147.6080354	118.1000278	141.3350901	DC1638T5	-1.271428571	-0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.06	79	158	6	0.037974684	10qC1	chr10-20103873-130453386	3	2	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.288376673	sgMsh2	autochthonous
chr10	129626038	129626038	T	G	ENSMUST00000204979.2	2	ENSMUSG00000095002	missense	S/R	8	Olfr798	ENSMUST00000204979.2:c.22A>C	ENSMUSP00000144716.1:p.Ser8Arg	H-2-Kb	9	5	4	TSVREFILL	TSVSEFILL	NetMHC	122.75	157	1.279	105	0.086	245.266	221.183	0.902	157	122.75	211.1	145.3	231.2650474	345.2311699	301.4740949	351.7628732	DC1638T5	1.585714286	1.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.093	105	0	0	NA	10qD3	chr10-20103873-130453386	3	2	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.446983843	sgMsh2	autochthonous
chr11	80330582	80330582	T	C	ENSMUST00000017836.7	1	ENSMUSG00000017692	missense	V/A	182	Rhbdl3	ENSMUST00000017836.7:c.545T>C	ENSMUSP00000017836.7:p.Val182Ala	H-2-Kb	9	4	8	ALFLYNGAL	ALFLYNGVL	NetMHCpan	136.3	280.8	2.06	77	0.078	313.442	623.902	1.99	841.75	242.07	280.8	136.3	771.0987516	547.154531	476.7053215	384.8132346	DC1638T5	1	1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.101	77	0	0	NA	11qB5	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.485434066	sgMsh2	autochthonous
chr11	85214299	85214299	A	G	ENSMUST00000018625.9	1	ENSMUSG00000018481	missense	L/P	147	Appbp2	ENSMUST00000018625.9:c.440T>C	ENSMUSP00000018625.9:p.Leu147Pro	H-2-Kb	9	5	7	KVFLSCPQL	KVFLSCLQL	NetMHCpan	235.9	274.8	1.165	150	0.027	301.293	350.632	1.164	293.65	252.44	274.8	235.9	463.5643185	385.5760057	407.6148523	350.1466697	DC1638T5	1	1.057142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.035	150	73	0	0	11qC	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.168219726	sgMsh2	autochthonous
chr10	62261632	62261632	T	C	ENSMUST00000020278.5	1	ENSMUSG00000020081	missense	M/T	297	Tacr2	ENSMUST00000020278.5:c.890T>C	ENSMUSP00000020278.5:p.Met297Thr	H-2-Kb	9	11	1	TSSTMYNPI	MSSTMYNPI	NetMHC	296.16	254.77	0.86	142	0.162	355.051	341.423	0.962	254.77	296.16	299.8	461.5	391.8411118	385.5760057	383.0451784	324.526376	DC1638T5	-0.214285714	-0.214285714	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.16	142	0	0	NA	10qB4	chr10-20103873-130453386	3	2	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.769004461	sgMsh2	autochthonous
chr10	79728986	79728986	A	G	ENSMUST00000099513.7	1	ENSMUSG00000020331	missense	M/V	411	Hcn2	ENSMUST00000099513.7:c.1231A>G	ENSMUSP00000097113.1:p.Met411Val	H-2-Kb	9	11	1	VTDIWLTML	MTDIWLTML	SMMPMBEC	285.266	738.329	2.588	39	0.128	344.022	966.558	2.81	1079.8	355.3	1613.6	953.8	853.3162183	332.7438214	738.3291242	285.2659918	DC1638T5	1.271428571	1.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.131	39	2	0	0	10qC1	chr10-20103873-130453386	3	2	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.629622402	sgMsh2	autochthonous
chr11	80330582	80330582	T	C	ENSMUST00000017836.7	1	ENSMUSG00000017692	missense	V/A	182	Rhbdl3	ENSMUST00000017836.7:c.545T>C	ENSMUSP00000017836.7:p.Val182Ala	H-2-Kb	9	3	9	VALFLYNGA	VALFLYNGV	SMM	359.84	90.18	0.251	77	0.078	384.378	85.49	0.222	42.89	402.95	80.8	710.1	90.17995204	359.8404656	105.9863656	365.8053055	DC1638T5	1	1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.101	77	0	0	NA	11qB5	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.485434066	sgMsh2	autochthonous
chr11	61069596	61069596	T	A	ENSMUST00000041944.8	1	ENSMUSG00000042529	missense	I/N	240	Kcnj12	ENSMUST00000041944.8:c.719T>A	ENSMUSP00000041696.2:p.Ile240Asn	H-2-Kb	9	5	7	AAFLFSNET	AAFLFSIET	SMM	286.49	329.693	1.151	167	0.024	417.827	554.106	1.326	796.32	410.79	662.3	489.5	329.6932077	286.4903513	445.9128626	424.864065	DC1638T5	0.128571429	1.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.032	167	0	0	NA	11qB2	chr11-3133205-69579350	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.153800892	sgMsh2	autochthonous
chr1	16369825	16369825	AT	A	ENSMUST00000162751.7	1	ENSMUSG00000025920	FS	N/X	364	Stau2	ENSMUST00000162751.7:c.1091del	ENSMUSP00000124505.1:p.Asn364MetfsTer67	H-2-Kb	9	64	0	LMFIKRWKL	NA	SMMPMBEC	146.977	NA	NA	129	0.054	253.231	NA	NA	NA	436.85	NA	281.5	NA	224.9624328	NA	146.9772103	DC1638T5	-0.3	0.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0543	129	40	0	0	1qA3	chr1-4867294-195062457	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.260980889	sgMsh2	autochthonous
chr11	94013657	94013657	GA	G	ENSMUST00000041956.13	1	ENSMUSG00000020859	FS	E/X	113	Spag9	ENSMUST00000041956.13:c.344del	ENSMUSP00000042271.7:p.Lys115ArgfsTer10	H-2-Kb	9	13	1	RIYRREWSL	NA	NetMHCpan	161.6	NA	NA	67	0.134	254.569	NA	NA	NA	467.72	NA	161.6	NA	260.6813732	NA	248.4562923	DC1638T5	-1.671428571	-1.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.132	67	98	2	0.020408163	11qD	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.63442868	sgMsh2	autochthonous
chr11	84215904	84215904	T	A	ENSMUST00000103201.7	5	ENSMUSG00000020532	missense	M/K	143	Acaca	ENSMUST00000103201.7:c.428T>A	ENSMUSP00000099490.1:p.Met143Lys	H-2-Kb	9	7	5	WSYEKFRNE	WSYEMFRNE	SMMPMBEC	216.895	260.765	1.202	199	0.05	359.177	398.513	1.11	536.26	487.62	1941.5	1655.6	246.0990856	230.7331526	260.7654204	216.8952295	DC1638T5	-2.485714286	-1.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.055	199	15	0	0	11qC	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.264345283	sgMsh2	autochthonous
chr10	130418605	130418605	CA	C	ENSMUST00000171811.3	5	ENSMUSG00000092048	FS	C/X	737	Vmn2r85	ENSMUST00000171811.3:c.2209del	ENSMUSP00000128792.2:p.Cys737AlafsTer43	H-2-Kb	9	35	0	LWLSWLGTF	NA	SMM	245.533	NA	NA	347	0.023	456.634	NA	NA	NA	499.03	NA	2307.2	NA	245.5330734	NA	414.2380608	DC1638T5	1.085714286	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.024	347	0	0	NA	10qD3	chr10-20103873-130453386	3	2	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.115350669	sgMsh2	autochthonous
chr10	78847735	78847735	T	C	ENSMUST00000205100.2	2	ENSMUSG00000051190	missense	Y/C	60	Olfr1356	ENSMUST00000205100.2:c.179A>G	ENSMUSP00000144815.1:p.Tyr60Cys	H-2-Kb	9	9	3	PMCLFLSNL	PMYLFLSNL	SMM	162.971	14.293	0.088	139	0.295	353.368	23.891	0.068	21.22	516.08	32.4	1064.1	14.29255921	162.970876	26.56134116	190.6557905	DC1638T5	1.771428571	1.771428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.298	139	0	0	NA	10qC1	chr10-20103873-130453386	3	2	1	0.82	3.941147861	POOR GOF (79.6%)	1	1	sgMsh2	autochthonous
chr12	80173046	80173046	T	G	ENSMUST00000021554.15	1	ENSMUSG00000015143	missense	K/Q	684	Actn1	ENSMUST00000021554.15:c.2050A>C	ENSMUSP00000021554.8:p.Lys684Gln	H-2-Db	10	3	9	KSIVNYKPQI	KSIVNYKPKI	NetMHC	54.68	54.87	1.003	60	0.083	432.617	374.012	0.865	54.87	54.68	191.8	166.6	556.2243536	698.6344547	696.0973814	782.8345774	DC1638T5	-0.728571429	-0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.09	60	924	42	0.045454545	12qC3	chr12-3501831-119465464	3	2	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.432565009	sgMsh2	autochthonous
chr14	110750603	110750603	CT	C	ENSMUST00000078386.3	1	ENSMUSG00000045871	FS	K/X	557	Slitrk6	ENSMUST00000078386.3:c.1671del	ENSMUSP00000077492.2:p.Ala558ProfsTer11	H-2-Kb	8	13	0	STVIFFAL	NA	NetMHC	6.88	NA	NA	223	0.031	18.663	NA	NA	NA	6.88	NA	16.3	NA	21.02519343	NA	23.69954455	DC1638T5	2.742857143	2.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.037	223	0	0	NA	14qE3	chr14-3072210-123317701	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.177832282	sgMsh2	autochthonous
chr13	68584651	68584651	T	C	ENSMUST00000051784.9	1	ENSMUSG00000021532	missense	C/R	364	Fastkd3	ENSMUST00000051784.9:c.1090T>C	ENSMUSP00000061737.8:p.Cys364Arg	H-2-Kb	8	7	5	VSALRFSL	VSALCFSL	NetMHC	27.34	82.66	3.023	131	0.092	192.586	138.984	0.722	82.66	27.34	131.5	55	146.4670721	330.1718172	160.9681675	373.8866857	DC1638T5	0.871428571	0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.099	131	27	3	0.111111111	13qB3	chr13-3554284-119495179	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.47582151	sgMsh2	autochthonous
chr11	110136171	110136171	T	A	ENSMUST00000044850.3	1	ENSMUSG00000041797	missense	Q/H	877	Abca9	ENSMUST00000044850.3:c.2631A>T	ENSMUSP00000036338.3:p.Gln877His	H-2-Kb	8	6	6	ISFVPHLL	ISFVPQLL	NetMHCpan	19.8	29.1	1.47	104	0.067	38.686	41.017	1.06	20.9	35.13	29.1	19.8	52.93464441	42.24156501	62.76824703	46.10414792	DC1638T5	1.285714286	1.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.073	104	1	0	0	11qE1	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.350858285	sgMsh2	autochthonous
chr14	110750603	110750603	CT	C	ENSMUST00000078386.3	1	ENSMUSG00000045871	FS	K/X	557	Slitrk6	ENSMUST00000078386.3:c.1671del	ENSMUSP00000077492.2:p.Ala558ProfsTer11	H-2-Kb	8	14	0	TVIFFALV	NA	NetMHCpan	37.1	NA	NA	223	0.031	50.509	NA	NA	NA	40.38	NA	37.1	NA	66.64076901	NA	60.63732022	DC1638T5	3.442857143	3.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.037	223	0	0	NA	14qE3	chr14-3072210-123317701	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.177832282	sgMsh2	autochthonous
chr13	11687965	11687965	CT	C	ENSMUST00000021750.14	1	ENSMUSG00000021313	FS	K/X	2879	Ryr2	ENSMUST00000021750.14:c.8636del	ENSMUSP00000021750.7:p.Lys2879ArgfsTer33	H-2-Kb	8	25	0	SSYRSVVM	NA	NetMHC	77.8	NA	NA	188	0.037	138.947	NA	NA	NA	77.8	NA	119.5	NA	158.3944645	NA	193.9724271	DC1638T5	0.414285714	0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.04	188	0	0	NA	13qA1	chr13-3554284-119495179	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.192251115	sgMsh2	autochthonous
chr13	3575118	3575118	GT	G	ENSMUST00000096069.4	1	ENSMUSG00000033799	FS	T/X	1611	Tasor2	ENSMUST00000096069.4:c.4831del	ENSMUSP00000093774.3:p.Thr1611LeufsTer30	H-2-Kb	8	21	0	SQSLFLPL	NA	NetMHCpan	83.8	NA	NA	245	0.11	136.884	NA	NA	NA	123.89	NA	83.8	NA	149.8787285	NA	164.3387578	DC1638T5	1.185714286	1.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.116	245	42	6	0.142857143	13qA1	chr13-3554284-119495179	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.557528234	sgMsh2	autochthonous
chr13	3575118	3575118	GT	G	ENSMUST00000096069.4	1	ENSMUSG00000033799	FS	T/X	1611	Tasor2	ENSMUST00000096069.4:c.4831del	ENSMUSP00000093774.3:p.Thr1611LeufsTer30	H-2-Kb	8	11	1	LMFRHTLI	NA	NetMHCpan	44.3	NA	NA	245	0.11	269.942	NA	NA	NA	136.48	NA	44.3	NA	484.9980584	NA	403.403814	DC1638T5	0.657142857	0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.116	245	42	6	0.142857143	13qA1	chr13-3554284-119495179	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.557528234	sgMsh2	autochthonous
chr13	95604665	95604665	T	G	ENSMUST00000059193.6	1	ENSMUSG00000048376	missense	S/R	121	F2r	ENSMUST00000059193.6:c.361A>C	ENSMUSP00000061754.5:p.Ser121Arg	H-2-Kb	8	7	5	VFIVRLPL	VFIVSLPL	NetMHC	196.2	251.52	1.282	134	0.09	225.021	218.809	0.972	251.52	196.2	279.8	212.5	145.794117	237.5417764	186.0972691	239.1883374	DC1638T5	1.857142857	1.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.106	134	1155	236	0.204329004	13qD1	chr13-3554284-119495179	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.509465455	sgMsh2	autochthonous
chr13	11687965	11687965	CT	C	ENSMUST00000021750.14	1	ENSMUSG00000021313	FS	K/X	2879	Ryr2	ENSMUST00000021750.14:c.8636del	ENSMUSP00000021750.7:p.Lys2879ArgfsTer33	H-2-Kb	8	23	0	SSSSYRSV	NA	NetMHC	206.83	NA	NA	188	0.037	282.1	NA	NA	NA	206.83	NA	532.4	NA	266.5262568	NA	297.6733808	DC1638T5	-0.685714286	-0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.04	188	0	0	NA	13qA1	chr13-3554284-119495179	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.192251115	sgMsh2	autochthonous
chr13	9143804	9143804	TA	T	ENSMUST00000188211.7	1	ENSMUSG00000033499	FS	K/X	163	Larp4b	ENSMUST00000188211.7:c.493del	ENSMUSP00000140993.1:p.Thr165HisfsTer32	H-2-Kb	8	16	0	SAYLGRIL	NA	NetMHCpan	221.2	NA	NA	264	0.258	344.176	NA	NA	NA	294.13	NA	221.2	NA	394.2212222	NA	431.2608157	DC1638T5	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.254	264	127	22	0.173228346	13qA1	chr13-3554284-119495179	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	1	sgMsh2	autochthonous
chr13	9143804	9143804	TA	T	ENSMUST00000188211.7	1	ENSMUSG00000033499	FS	K/X	163	Larp4b	ENSMUST00000188211.7:c.493del	ENSMUSP00000140993.1:p.Thr165HisfsTer32	H-2-Kb	8	34	0	TVISMCQL	NA	NetMHCpan	305.3	NA	NA	264	0.258	427.423	NA	NA	NA	476.63	NA	305.3	NA	480.5515695	NA	378.2160895	DC1638T5	1.8	1.8	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.254	264	127	22	0.173228346	13qA1	chr13-3554284-119495179	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	1	sgMsh2	autochthonous
chr14	110750603	110750603	CT	C	ENSMUST00000078386.3	1	ENSMUSG00000045871	FS	K/X	557	Slitrk6	ENSMUST00000078386.3:c.1671del	ENSMUSP00000077492.2:p.Ala558ProfsTer11	H-2-Kb	9	13	0	STVIFFALV	NA	NetMHC	9.07	NA	NA	223	0.031	69.928	NA	NA	NA	9.07	NA	37.5	NA	102.3552209	NA	108.9557112	DC1638T5	3.442857143	3.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.037	223	0	0	NA	14qE3	chr14-3072210-123317701	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.177832282	sgMsh2	autochthonous
chr11	110136171	110136171	T	A	ENSMUST00000044850.3	1	ENSMUSG00000041797	missense	Q/H	877	Abca9	ENSMUST00000044850.3:c.2631A>T	ENSMUSP00000036338.3:p.Gln877His	H-2-Kb	9	4	8	FGISFVPHL	FGISFVPQL	NetMHCpan	39.1	73.8	1.887	104	0.067	202.451	248.055	1.225	76.11	43.4	73.8	39.1	436.6264089	361.5014137	420.0006862	444.8872915	DC1638T5	1.385714286	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.073	104	1	0	0	11qE1	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.350858285	sgMsh2	autochthonous
chr11	107495709	107495709	T	C	ENSMUST00000021063.12	1	ENSMUSG00000020720	missense	Y/H	369	Psmd12	ENSMUST00000021063.12:c.1105T>C	ENSMUSP00000021063.6:p.Tyr369His	H-2-Kb	9	7	5	IMAKHYTRI	IMAKYYTRI	NetMHC	48.55	26.47	0.545	343	0.041	52.717	35.023	0.664	26.47	48.55	16.9	50.7	46.03731641	57.42618953	43.57626466	54.73309412	DC1638T5	-1.042857143	-0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.047	343	592	18	0.030405405	11qE1	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.22589506	sgMsh2	autochthonous
chr13	95604665	95604665	T	G	ENSMUST00000059193.6	1	ENSMUSG00000048376	missense	S/R	121	F2r	ENSMUST00000059193.6:c.361A>C	ENSMUSP00000061754.5:p.Ser121Arg	H-2-Kb	9	4	8	YTIVFIVRL	YTIVFIVSL	NetMHC	78.64	147.33	1.873	134	0.09	200.791	297.304	1.481	147.33	78.64	278.3	176.1	316.3078717	225.4810248	323.779986	226.073678	DC1638T5	2.785714286	2.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.106	134	1155	236	0.204329004	13qD1	chr13-3554284-119495179	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.509465455	sgMsh2	autochthonous
chr14	52140698	52140698	A	G	ENSMUST00000111603.9	1	ENSMUSG00000057132	missense	Q/R	501	Rpgrip1	ENSMUST00000111603.9:c.1502A>G	ENSMUSP00000107230.2:p.Gln501Arg	H-2-Kb	9	6	6	INMCYREEL	INMCYQEEL	NetMHCpan	54.8	65.7	1.199	92	0.043	150.966	164.94	1.093	120.83	105.03	65.7	54.8	232.8681001	227.567375	209.0499173	196.9019422	DC1638T5	-0.657142857	-0.557142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.061	92	0	0	NA	14qC2	chr14-3072210-123317701	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.293182951	sgMsh2	autochthonous
chr13	3575118	3575118	GT	G	ENSMUST00000096069.4	1	ENSMUSG00000033799	FS	T/X	1611	Tasor2	ENSMUST00000096069.4:c.4831del	ENSMUSP00000093774.3:p.Thr1611LeufsTer30	H-2-Kb	9	20	0	KSQSLFLPL	NA	NetMHCpan	101.7	NA	NA	245	0.11	223.737	NA	NA	NA	128.24	NA	101.7	NA	319.2346324	NA	421.9393213	DC1638T5	1.185714286	1.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.116	245	42	6	0.142857143	13qA1	chr13-3554284-119495179	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.557528234	sgMsh2	autochthonous
chr13	9143804	9143804	TA	T	ENSMUST00000188211.7	1	ENSMUSG00000033499	FS	K/X	163	Larp4b	ENSMUST00000188211.7:c.493del	ENSMUSP00000140993.1:p.Thr165HisfsTer32	H-2-Kb	9	16	0	SAYLGRILL	NA	NetMHCpan	142.6	NA	NA	264	0.258	157.837	NA	NA	NA	143.84	NA	142.6	NA	171.8343562	NA	214.4124503	DC1638T5	1.385714286	1.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.254	264	127	22	0.173228346	13qA1	chr13-3554284-119495179	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	1	sgMsh2	autochthonous
chr13	95604665	95604665	T	G	ENSMUST00000059193.6	1	ENSMUSG00000048376	missense	S/R	121	F2r	ENSMUST00000059193.6:c.361A>C	ENSMUSP00000061754.5:p.Ser121Arg	H-2-Kb	9	6	6	IVFIVRLPL	IVFIVSLPL	NetMHCpan	76.9	75.6	0.983	134	0.09	177.944	158.969	0.893	142.91	161.24	75.6	76.9	175.0289954	230.202481	183.3369491	194.6480243	DC1638T5	1.857142857	2.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.106	134	1155	236	0.204329004	13qD1	chr13-3554284-119495179	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.509465455	sgMsh2	autochthonous
chr11	106824717	106824717	A	G	ENSMUST00000092517.8	1	ENSMUSG00000018363	missense	W/R	655	Smurf2	ENSMUST00000092517.8:c.1963T>C	ENSMUSP00000090177.2:p.Trp655Arg	H-2-Kb	9	8	4	VVKRFWKAV	VVKWFWKAV	NetMHC	235.93	258.8	1.097	134	0.164	315.184	276.029	0.876	258.8	235.93	241.3	238.4	336.5968133	442.7004873	293.2580889	391.9674468	DC1638T5	-0.628571429	-0.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.173	134	93	21	0.225806452	11qE1	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.831486073	sgMsh2	autochthonous
chr11	97343273	97343273	A	C	ENSMUST00000093942.4	5	ENSMUSG00000070337	missense	N/K	583	Gpr179	ENSMUST00000093942.4:c.1749T>G	ENSMUSP00000091474.4:p.Asn583Lys	H-2-Kb	9	7	5	IALHKELLL	IALHNELLL	SMM	180.347	357.363	1.982	79	0.051	209.404	403.53	1.927	429.27	237.57	883.1	521.4	357.3633412	180.3474475	377.7896015	181.2383084	DC1638T5	0.657142857	0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.055	79	0	0	NA	11qD	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.264345283	sgMsh2	autochthonous
chr14	47529577	47529577	A	G	ENSMUST00000043112.8	1	ENSMUSG00000037536	missense	I/M	182	Fbxo34	ENSMUST00000043112.8:c.546A>G	ENSMUSP00000044675.7:p.Ile182Met	H-2-Kb	9	3	9	AAHQYSNRM	AAHQYSNRI	NetMHC	255.47	492.55	1.928	148	0.047	340.667	620.65	1.822	492.55	255.47	791	370.8	586.2866429	310.5346024	655.0131214	383.9281887	DC1638T5	-2.128571429	-1.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.051	148	63	0	0	14qC1	chr14-3072210-123317701	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.245120172	sgMsh2	autochthonous
chr14	55767543	55767543	T	C	ENSMUST00000057569.3	1	ENSMUSG00000046908	missense	I/T	101	Ltb4r1	ENSMUST00000057569.3:c.302T>C	ENSMUSP00000051368.3:p.Ile101Thr	H-2-Kb	9	11	1	TSMYASVLL	ISMYASVLL	NetMHC	318.62	137.54	0.432	183	0.022	417.246	184.669	0.443	137.54	318.62	126.6	437.2	231.7981684	397.2921646	322.2923521	533.6419961	DC1638T5	1.914285714	1.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.03	183	6	0	0	14qC3	chr14-3072210-123317701	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.144188336	sgMsh2	autochthonous
chr11	115590460	115590460	A	C	ENSMUST00000019135.13	1	ENSMUSG00000020740	missense	L/R	228	Gga3	ENSMUST00000019135.13:c.683T>G	ENSMUSP00000019135.7:p.Leu228Arg	H-2-Kb	9	8	4	VKLRHEMLL	VKLLHEMLL	SMM	367.375	251.252	0.684	102	0.049	427.149	374.691	0.877	428.57	422.53	1422.8	1503.5	251.2522734	367.3753391	320.8115533	431.7675507	DC1638T5	0.3	0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.059	102	21	0	0	11qE2	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.283570395	sgMsh2	autochthonous
chr13	100222635	100222635	A	C	ENSMUST00000049789.2	1	ENSMUSG00000071203	missense	L/V	698	Naip5	ENSMUST00000049789.2:c.2092T>G	ENSMUSP00000058611.2:p.Leu698Val	H-2-Kb	9	11	1	VTGLFSSCF	LTGLFSSCF	SMM	269.842	776.444	2.877	290	0.024	412.728	1324.443	3.209	1761.22	482.49	4704.9	1458	776.4437528	269.8422814	887.6668471	342.9651563	DC1638T5	1.414285714	1.414285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.027	290	1	0	0	13qD1	chr13-3554284-119495179	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.129769503	sgMsh2	autochthonous
chr13	9143804	9143804	TA	T	ENSMUST00000188211.7	1	ENSMUSG00000033499	FS	K/X	163	Larp4b	ENSMUST00000188211.7:c.493del	ENSMUSP00000140993.1:p.Thr165HisfsTer32	H-2-Kb	9	28	0	TLYPRWTVI	NA	NetMHCpan	173.9	NA	NA	264	0.258	410.162	NA	NA	NA	598.98	NA	173.9	NA	515.3591605	NA	304.9650004	DC1638T5	-0.042857143	-0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.254	264	127	22	0.173228346	13qA1	chr13-3554284-119495179	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	1	sgMsh2	autochthonous
chr14	69797067	69797067	TG	T	ENSMUST00000022665.3	1	ENSMUSG00000022075	FS	P/X	236	Rhobtb2	ENSMUST00000022665.3:c.708del	ENSMUSP00000022665.2:p.Lys237SerfsTer64	H-2-Kb	9	34	0	SWKTRSVRM	NA	SMM	331.215	NA	NA	51	0.078	498.058	NA	NA	NA	605.05	NA	3139.9	NA	331.2150024	NA	391.0659467	DC1638T5	-1.185714286	-1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.105	51	12	0	0	14qD2	chr14-3072210-123317701	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.504659177	sgMsh2	autochthonous
chr17	24881012	24881012	T	A	ENSMUST00000050714.7	1	ENSMUSG00000046070	missense	F/Y	359	Igfals	ENSMUST00000050714.7:c.1076T>A	ENSMUSP00000060169.6:p.Phe359Tyr	H-2-Db	9	11	1	YGLFNVAVM	FGLFNVAVM	NetMHC	5.21	7.24	1.39	90	0.033	33.319	38.317	1.15	7.24	5.21	13.6	10.2	71.88197482	62.31893172	63.03329355	56.4377901	DC1638T5	2.171428571	2.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.048	90	0	0	NA	17qA3.3	chr17-3077700-90208269	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.230701338	sgMsh2	autochthonous
chr17	7746618	7746618	GT	G	ENSMUST00000097425.9	5	ENSMUSG00000071984	FS	N/X	1572	Fndc1	ENSMUST00000097425.9:c.4715del	ENSMUSP00000095036.3:p.Asn1572ThrfsTer25	H-2-Db	9	23	0	HLLQNQTIL	NA	NetMHC	243.68	NA	NA	181	0.039	300.602	NA	NA	NA	243.68	NA	250.8	NA	385.1412184	NA	350.4047623	DC1638T5	0.128571429	0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.043	181	7	0	0	17qA1	chr17-3077700-90208269	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.206669949	sgMsh2	autochthonous
chr15	78455082	78455082	A	G	ENSMUST00000017086.4	1	ENSMUSG00000016942	missense	V/A	232	Tmprss6	ENSMUST00000017086.4:c.695T>C	ENSMUSP00000017086.3:p.Val232Ala	H-2-Db	9	3	9	YSYVNPGQA	YSYVNPGQV	SMM	185.191	82.532	0.446	32	0.125	234.338	74.766	0.319	28.22	275.67	67	681.7	82.53154971	185.1910525	83.28561557	193.0056399	DC1638T5	-0.614285714	-0.614285714	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.148	32	5	0	0	15qE1	chr15-3341105-103525164	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.711329126	sgMsh2	autochthonous
chr17	38274860	38274860	A	G	ENSMUST00000173841.2	2	ENSMUSG00000057443	missense	T/A	30	Olfr138	ENSMUST00000173841.2:c.88A>G	ENSMUSP00000133828.2:p.Thr30Ala	H-2-Db	9	10	2	VALLITYPM	VTLLITYPM	NetMHCpan	164.3	1403	8.539	241	0.075	236.152	1462.772	6.194	3161.15	380.52	1403	164.3	1338.505007	205.8827687	1522.544518	266.4219484	DC1638T5	1.485714286	2.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.074	241	0	0	NA	17qB1	chr17-3077700-90208269	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.355664563	sgMsh2	autochthonous
chr17	56650807	56650807	A	C	ENSMUST00000112979.3	1	ENSMUSG00000040828	missense	N/T	238	Catsperd	ENSMUST00000112979.3:c.713A>C	ENSMUSP00000108603.2:p.Asn238Thr	H-2-Kb	8	5	7	IAFSYKTL	IAFSYKNL	NetMHC	4.78	2.78	0.582	88	0.057	7.123	3.176	0.446	2.78	4.78	3.4	5.4	3.2564169	9.676983488	3.095565516	8.845858744	DC1638T5	0.242857143	0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.074	88	2	0	0	17qD	chr17-3077700-90208269	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.355664563	sgMsh2	autochthonous
chr17	88988523	88988523	A	C	ENSMUST00000035701.5	1	ENSMUSG00000032937	missense	L/W	252	Fshr	ENSMUST00000035701.5:c.755T>G	ENSMUSP00000040477.4:p.Leu252Trp	H-2-Kb	8	7	5	STYRWKKL	STYRLKKL	NetMHC	16.31	33.62	2.061	98	0.041	29.845	54.039	1.811	33.62	16.31	43.7	29.3	68.3502331	39.15074224	64.37837347	30.39065077	DC1638T5	-1.628571429	-1.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.043	98	0	0	NA	17qE5	chr17-3077700-90208269	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.206669949	sgMsh2	autochthonous
chr17	12919448	12919448	A	T	ENSMUST00000151287.7	1	ENSMUSG00000068039	missense	K/M	126	Tcp1	ENSMUST00000151287.7:c.377A>T	ENSMUSP00000116108.1:p.Lys126Met	H-2-Kb	8	4	8	SGYRLACM	SGYRLACK	NetMHC	30.05	11871.1	395.045	230	0.026	88.065	2575.119	29.241	11871.1	30.05	4499	68.3	651.2383991	114.219433	455.7639811	107.830098	DC1638T5	0.542857143	0.542857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.028	230	1063	17	0.015992474	17qA1	chr17-3077700-90208269	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.134575781	sgMsh2	autochthonous
chr17	26220358	26220358	A	T	ENSMUST00000114988.7	1	ENSMUSG00000024187	missense	F/Y	64	Fam234a	ENSMUST00000114988.7:c.191T>A	ENSMUSP00000110639.1:p.Phe64Tyr	H-2-Kb	8	9	3	VVYVLSFI	VVFVLSFI	NetMHC	34.59	88.37	2.555	147	0.027	63.807	103.03	1.615	88.37	34.59	52.2	35.2	130.8398387	96.99291239	117.6901185	92.41447486	DC1638T5	2.485714286	2.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.036	147	133	4	0.030075188	17qA3.3	chr17-3077700-90208269	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.173026004	sgMsh2	autochthonous
chr19	8743104	8743104	T	A	ENSMUST00000176381.7	1	ENSMUSG00000010110	missense	N/K	107	Stx5a	ENSMUST00000176381.7:c.321T>A	ENSMUSP00000134854.1:p.Asn107Lys	H-2-Kb	8	9	3	LSKTFAKL	LSNTFAKL	NetMHC	36.84	17.18	0.466	335	0.033	46.764	30.584	0.654	17.18	36.84	35.8	41.2	34.02044578	76.69022289	27.14813499	52.32870654	DC1638T5	-0.128571429	-0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.033	335	154	4	0.025974026	19qA	chr19-7197365-61225035	5	3	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.15860717	sgMsh2	autochthonous
chr15	76734901	76734901	T	C	ENSMUST00000239003.1	NA	ENSMUSG00000033697	missense	M/V	828	Arhgap39	ENSMUST00000239003.1:c.2482A>G	ENSMUSP00000158945.1:p.Met828Val	H-2-Kb	8	4	8	EGYIYRHV	EGYIYRHM	NetMHC	109.11	78.24	0.717	92	0.043	179.675	165.952	0.924	78.24	109.11	155	248	219.6544469	195.7672319	176.9049561	163.5836898	DC1638T5	-0.285714286	-0.285714286	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.051	92	9	1	0.111111111	15qD3	chr15-3341105-103525164	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.245120172	sgMsh2	autochthonous
chr16	97794361	97794361	T	G	ENSMUST00000095849.9	5	ENSMUSG00000014039	missense	N/T	1115	Prdm15	ENSMUST00000095849.9:c.3344A>C	ENSMUSP00000093533.3:p.Asn1115Thr	H-2-Kb	8	5	7	SVAHFITL	SVAHFINL	NetMHCpan	30.5	15.2	0.498	183	0.022	152.55	37.247	0.244	25.77	160.31	15.2	30.5	48.72367077	144.7904774	60.91720937	174.0764414	DC1638T5	1.885714286	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.029	183	6	0	0	16qC4	NA	NA	NA	NA	0.82	3.941147861	POOR GOF (79.6%)	NA	NA	sgMsh2	autochthonous
chr18	65155680	65155680	GA	G	ENSMUST00000235343.1	NA	ENSMUSG00000024589	FS	K/X	149	Nedd4l	ENSMUST00000235343.1:c.448del	ENSMUSP00000158026.1:p.Met150TrpfsTer57	H-2-Kb	8	47	0	STRRSSPL	NA	SMM	144.79	NA	NA	262	0.08	179.601	NA	NA	NA	165.23	NA	1155.5	NA	144.7904774	NA	193.9724271	DC1638T5	-1.3	-1.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.093	262	78	0	0	18qE1	chr18-3325290-89206553	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.446983843	sgMsh2	autochthonous
chr17	13948930	13948930	CT	C	ENSMUST00000088809.5	1	ENSMUSG00000067941	FS	A/X	186	Gm7168	ENSMUST00000088809.5:c.561del	ENSMUSP00000094997.3:p.Phe187LeufsTer22	H-2-Kb	8	8	5	GAYALVPL	GAYAFGAP	NetMHCpan	119.9	3622.2	30.21	301	0.03	152.018	2124.941	13.978	9219.93	168.91	3622.2	119.9	627.6824703	178.5418375	553.0189331	135.1263357	DC1638T5	1.785714286	1.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.033	301	0	0	NA	17qA2	chr17-3077700-90208269	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.15860717	sgMsh2	autochthonous
chr17	24881012	24881012	T	A	ENSMUST00000050714.7	1	ENSMUSG00000046070	missense	F/Y	359	Igfals	ENSMUST00000050714.7:c.1076T>A	ENSMUSP00000060169.6:p.Phe359Tyr	H-2-Kb	8	6	6	KVGAFYGL	KVGAFFGL	NetMHCpan	175.8	174.8	0.994	90	0.033	198.578	194.678	0.98	338.93	256.12	174.8	175.8	213.6682534	209.7683683	175.6871509	187.3872337	DC1638T5	1.5	1.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.048	90	0	0	NA	17qA3.3	chr17-3077700-90208269	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.230701338	sgMsh2	autochthonous
chr17	86805319	86805319	T	G	ENSMUST00000024954.10	1	ENSMUSG00000024140	missense	I/S	115	Epas1	ENSMUST00000024954.10:c.344T>G	ENSMUSP00000024954.9:p.Ile115Ser	H-2-Kb	8	10	2	NSSKFMGL	NISKFMGL	NetMHC	286.04	455.38	1.592	195	0.036	336.078	535.192	1.592	455.38	286.04	458.4	303.4	611.9839043	368.7567681	678.797134	389.7086091	DC1638T5	0.371428571	0.371428571	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;Vardict	3	0.041	195	102	0	0	17qE4	chr17-3077700-90208269	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.197057393	sgMsh2	autochthonous
chr17	26121541	26121541	T	C	ENSMUST00000025010.13	1	ENSMUSG00000024180	missense	V/A	633	Tmem8	ENSMUST00000025010.13:c.1898T>C	ENSMUSP00000025010.7:p.Val633Ala	H-2-Kb	8	6	6	TILKQALL	TILKQVLL	SMM	225.289	651.238	2.891	131	0.107	323.972	1121.726	3.462	1483.47	341.93	1360.9	644.9	651.2383991	225.2890066	882.5513833	306.013087	DC1638T5	1.471428571	1.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.113	131	28	0	0	17qA3.3	chr17-3077700-90208269	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.5431094	sgMsh2	autochthonous
chr19	5492528	5492528	T	G	ENSMUST00000209469.1	1	ENSMUSG00000056201	missense	I/S	12	Cfl1	ENSMUST00000209469.1:c.35T>G	ENSMUSP00000147514.1:p.Ile12Ser	H-2-Kb	8	10	2	VSKVFNDM	VIKVFNDM	NetMHCpan	302.5	529.3	1.75	72	0.042	336.511	571.825	1.699	754.26	355.25	529.3	302.5	577.750061	348.1288376	565.9003988	324.8927349	DC1638T5	-0.4	-0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.065	72	1956	40	0.020449898	19qA	chr19-3491023-7197088	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.312408062	sgMsh2	autochthonous
chr17	7746618	7746618	GT	G	ENSMUST00000097425.9	5	ENSMUSG00000071984	FS	N/X	1572	Fndc1	ENSMUST00000097425.9:c.4715del	ENSMUSP00000095036.3:p.Asn1572ThrfsTer25	H-2-Kb	8	10	2	KTLMAMGL	NA	NetMHC	422.16	NA	NA	181	0.039	475.561	NA	NA	NA	422.16	NA	445.6	NA	505.5219295	NA	519.6847826	DC1638T5	1.728571429	1.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.043	181	7	0	0	17qA1	chr17-3077700-90208269	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.206669949	sgMsh2	autochthonous
chr17	24881012	24881012	T	A	ENSMUST00000050714.7	1	ENSMUSG00000046070	missense	F/Y	359	Igfals	ENSMUST00000050714.7:c.1076T>A	ENSMUSP00000060169.6:p.Phe359Tyr	H-2-Kb	8	9	3	AFYGLFNV	AFFGLFNV	SMM	217.641	293.589	1.349	90	0.033	372.867	509.418	1.366	725.54	471.11	669.1	509	293.5891489	217.6406428	349.7357273	274.6249558	DC1638T5	1.2	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.048	90	0	0	NA	17qA3.3	chr17-3077700-90208269	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.230701338	sgMsh2	autochthonous
chr18	31833607	31833607	A	G	ENSMUST00000025264.7	5	ENSMUSG00000024400	missense	M/V	167	Wdr33	ENSMUST00000025264.7:c.499A>G	ENSMUSP00000025264.6:p.Met167Val	H-2-Kb	8	11	1	VTWSHNDM	MTWSHNDM	NetMHCpan	322.2	1023.1	3.175	235	0.06	402.02	939.812	2.338	2847.55	705.79	1023.1	322.2	852.5895396	399.7053856	856.5249141	404.3337559	DC1638T5	-1.528571429	-1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.056	235	142	3	0.021126761	18qB1	chr18-3325290-89206553	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.269151561	sgMsh2	autochthonous
chr17	13235556	13235556	C	A	ENSMUST00000162940.2	5	ENSMUSG00000073457	missense	P/Q	201	Smok2b	ENSMUST00000162940.2:c.602C>A	ENSMUSP00000124967.1:p.Pro201Gln	H-2-Kb	8	10	2	VQFDAASI	VPFDAASI	NetMHCpan	335.2	3797.3	11.328	844	0.073	413.885	2224.269	5.374	4018.54	777.11	3797.3	335.2	573.7728575	403.403814	651.2383991	424.3654321	DC1638T5	0.442857143	0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.076	844	0	0	NA	17qA1	chr17-3077700-90208269	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.365277119	sgMsh2	autochthonous
chr16	59149380	59149380	CT	C	ENSMUST00000216957.2	2	ENSMUSG00000062608	FS	F/X	177	Olfr195	ENSMUST00000216957.2:c.535del	ENSMUSP00000150249.1:p.Cys179ValfsTer19	H-2-Kb	8	7	7	VIKHFFVM	VIKHFFCD	NetMHCpan	161.2	12189.5	75.617	263	0.023	309.397	7298.982	23.591	13054.83	821.99	12189.5	161.2	2408.463117	320.4350395	1760.921516	298.3595888	DC1638T5	1.3	1.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.028	263	0	0	NA	16qC1.3	chr16-3948854-96421607	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.134575781	sgMsh2	autochthonous
chr16	59149380	59149380	CT	C	ENSMUST00000216957.2	2	ENSMUSG00000062608	FS	F/X	177	Olfr195	ENSMUST00000216957.2:c.535del	ENSMUSP00000150249.1:p.Cys179ValfsTer19	H-2-Kb	8	14	0	MSFHYTES	NA	SMM	112.393	NA	NA	263	0.023	255.311	NA	NA	NA	864.82	NA	362.8	NA	112.3931906	NA	147.8223152	DC1638T5	-1.071428571	-0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.028	263	0	0	NA	16qC1.3	chr16-3948854-96421607	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.134575781	sgMsh2	autochthonous
chr17	56650807	56650807	A	C	ENSMUST00000112979.3	1	ENSMUSG00000040828	missense	N/T	238	Catsperd	ENSMUST00000112979.3:c.713A>C	ENSMUSP00000108603.2:p.Asn238Thr	H-2-Kb	9	5	7	IAFSYKTLL	IAFSYKNLL	NetMHCpan	7.4	10	1.351	88	0.057	22.967	21.944	0.955	12.33	11.57	10	7.4	31.55803838	34.36449768	45.52500477	43.47604204	DC1638T5	0.528571429	0.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.074	88	2	0	0	17qD	chr17-3077700-90208269	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.355664563	sgMsh2	autochthonous
chr16	97794361	97794361	T	G	ENSMUST00000095849.9	5	ENSMUSG00000014039	missense	N/T	1115	Prdm15	ENSMUST00000095849.9:c.3344A>C	ENSMUSP00000093533.3:p.Asn1115Thr	H-2-Kb	9	4	8	QSVAHFITL	QSVAHFINL	NetMHC	49.2	15.47	0.314	183	0.022	109.481	80.993	0.74	15.47	49.2	28.6	59.7	133.3859235	159.261206	160.0479073	191.5358177	DC1638T5	1.885714286	1.885714286	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.029	183	6	0	0	16qC4	NA	NA	NA	NA	0.82	3.941147861	POOR GOF (79.6%)	NA	NA	sgMsh2	autochthonous
chr16	17144028	17144028	T	G	ENSMUST00000023452.15	1	ENSMUSG00000022768	missense	S/R	19	Ccdc116	ENSMUST00000023452.15:c.55A>C	ENSMUSP00000023452.7:p.Ser19Arg	H-2-Kb	9	9	3	AHRTYVAPL	AHSTYVAPL	NetMHC	68.02	265.13	3.898	121	0.05	292.01	550.607	1.886	265.13	68.02	249.7	186.6	1224.926415	501.3141926	836.0841685	397.4202571	DC1638T5	0.242857143	0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.057	121	2	0	0	16qA3	chr16-3948854-96421607	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.273957839	sgMsh2	autochthonous
chr17	28878498	28878498	A	G	ENSMUST00000056866.7	1	ENSMUSG00000043286	missense	M/V	213	Pnpla1	ENSMUST00000056866.7:c.637A>G	ENSMUSP00000050123.5:p.Met213Val	H-2-Kb	9	10	2	RVFNFSFQF	RMFNFSFQF	NetMHC	92.96	78.03	0.839	134	0.104	151.561	86.997	0.574	78.03	92.96	57	95.1	95.96436635	208.0223508	124.2367266	252.4933823	DC1638T5	0.485714286	0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.092	134	0	0	NA	17qA3.3	chr17-3077700-90208269	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.442177565	sgMsh2	autochthonous
chr15	76734901	76734901	T	C	ENSMUST00000239003.1	NA	ENSMUSG00000033697	missense	M/V	828	Arhgap39	ENSMUST00000239003.1:c.2482A>G	ENSMUSP00000158945.1:p.Met828Val	H-2-Kb	9	6	6	YIYRHVDPV	YIYRHMDPV	NetMHC	135.09	86.46	0.64	92	0.043	269.264	183.099	0.68	86.46	135.09	131.1	179.4	251.8314697	375.0679891	235.0985768	359.1286062	DC1638T5	-0.814285714	-0.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.051	92	9	1	0.111111111	15qD3	chr15-3341105-103525164	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.245120172	sgMsh2	autochthonous
chr19	5039877	5039877	T	A	ENSMUST00000053705.7	1	ENSMUSG00000047379	missense	Y/N	301	B4gat1	ENSMUST00000053705.7:c.901T>A	ENSMUSP00000062016.6:p.Tyr301Asn	H-2-Kb	9	9	3	TNNSRWVNL	TNYSRWVNL	NetMHC	142.39	11.77	0.083	78	0.051	167.011	14.579	0.087	11.77	142.39	8.7	280.7	18.20161819	178.6940122	17.38801475	155.3280893	DC1638T5	-0.742857143	-0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.058	78	42	2	0.047619048	19qA	chr19-3491023-7197088	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.278764117	sgMsh2	autochthonous
chr15	79252468	79252468	A	T	ENSMUST00000039752.3	1	ENSMUSG00000032988	missense	L/Q	178	Slc16a8	ENSMUST00000039752.3:c.533T>A	ENSMUSP00000040522.3:p.Leu178Gln	H-2-Kb	9	8	4	GGFQLFGGL	GGFLLFGGL	NetMHCpan	120.3	95.1	0.791	9	0.333	267.877	193.536	0.722	103.77	147.38	95.1	120.3	312.6871254	491.0322312	283.3022345	388.3738676	DC1638T5	1.271428571	1.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.4	9	0	0	NA	15qE1	chr15-3341105-103525164	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	2	1	sgMsh2	autochthonous
chr17	26121541	26121541	T	C	ENSMUST00000025010.13	1	ENSMUSG00000024180	missense	V/A	633	Tmem8	ENSMUST00000025010.13:c.1898T>C	ENSMUSP00000025010.7:p.Val633Ala	H-2-Kb	9	5	7	KTILKQALL	KTILKQVLL	NetMHC	206.37	511.15	2.477	131	0.107	402.144	621.876	1.546	511.15	206.37	804.5	377.6	615.3327071	426.6875784	628.4200023	463.713778	DC1638T5	1.471428571	1.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.113	131	28	0	0	17qA3.3	chr17-3077700-90208269	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.5431094	sgMsh2	autochthonous
chr18	36947705	36947705	T	C	ENSMUST00000192503.1	1	ENSMUSG00000102312	missense	L/S	500	Pcdha3	ENSMUST00000192503.1:c.1499T>C	ENSMUSP00000141989.1:p.Leu500Ser	H-2-Kb	9	10	2	RSLSSYVSV	RLLSSYVSV	NetMHC	241.73	3042.22	12.585	545	0.031	482.647	2932.182	6.075	3042.22	241.73	1764.4	359.8	2911.454451	605.4942175	2952.908568	689.0488306	DC1638T5	1.214285714	1.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.031	545	0	0	NA	18qB2	chr18-3325290-89206553	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.148994614	sgMsh2	autochthonous
chr16	97794361	97794361	T	G	ENSMUST00000095849.9	5	ENSMUSG00000014039	missense	N/T	1115	Prdm15	ENSMUST00000095849.9:c.3344A>C	ENSMUSP00000093533.3:p.Asn1115Thr	H-2-Kb	9	7	5	AHFITLTTL	AHFINLTTL	NetMHC	274.09	267.77	0.977	183	0.022	421.295	379.77	0.901	267.77	274.09	312.6	337.8	491.0322312	504.7891366	446.9407979	574.4470454	DC1638T5	1.828571429	1.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.029	183	6	0	0	16qC4	NA	NA	NA	NA	0.82	3.941147861	POOR GOF (79.6%)	NA	NA	sgMsh2	autochthonous
chr17	12919448	12919448	A	T	ENSMUST00000151287.7	1	ENSMUSG00000068039	missense	K/M	126	Tcp1	ENSMUST00000151287.7:c.377A>T	ENSMUSP00000116108.1:p.Lys126Met	H-2-Kb	9	3	9	ISGYRLACM	ISGYRLACK	SMMPMBEC	143.632	1615.288	11.246	230	0.026	237.307	8489.703	35.775	14287.19	279.58	17027.7	1057	2692.216614	195.0338527	1615.288124	143.6316005	DC1638T5	0.542857143	0.542857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.028	230	1063	17	0.015992474	17qA1	chr17-3077700-90208269	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.134575781	sgMsh2	autochthonous
chr17	26220358	26220358	A	T	ENSMUST00000114988.7	1	ENSMUSG00000024187	missense	F/Y	64	Fam234a	ENSMUST00000114988.7:c.191T>A	ENSMUSP00000110639.1:p.Phe64Tyr	H-2-Kb	9	9	3	VVYVLSFII	VVFVLSFII	SMM	130.05	208.983	1.607	147	0.027	264.454	399.498	1.511	451.26	299.16	706	421.6	208.9825384	130.0498932	347.7362769	229.7470798	DC1638T5	2.528571429	2.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.036	147	133	4	0.030075188	17qA3.3	chr17-3077700-90208269	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.173026004	sgMsh2	autochthonous
chr17	24881012	24881012	T	A	ENSMUST00000050714.7	1	ENSMUSG00000046070	missense	F/Y	359	Igfals	ENSMUST00000050714.7:c.1076T>A	ENSMUSP00000060169.6:p.Phe359Tyr	H-2-Kb	9	6	6	KVGAFYGLF	KVGAFFGLF	SMM	255.335	359.013	1.406	90	0.033	295.133	381.445	1.292	427.43	331	305.1	305	359.0128555	255.3347944	403.8778168	285.2659918	DC1638T5	1.3	1.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.048	90	0	0	NA	17qA3.3	chr17-3077700-90208269	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.230701338	sgMsh2	autochthonous
chr17	56650807	56650807	A	C	ENSMUST00000112979.3	1	ENSMUSG00000040828	missense	N/T	238	Catsperd	ENSMUST00000112979.3:c.713A>C	ENSMUSP00000108603.2:p.Asn238Thr	H-2-Kb	9	7	5	FSYKTLLEV	FSYKNLLEV	SMM	328.935	319.971	0.973	88	0.057	420.945	333.885	0.793	273.85	354.08	347.8	520.3	319.9705442	328.9349344	379.5333991	487.8092149	DC1638T5	0.342857143	0.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.074	88	2	0	0	17qD	chr17-3077700-90208269	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.355664563	sgMsh2	autochthonous
chr19	8743104	8743104	T	A	ENSMUST00000176381.7	1	ENSMUSG00000010110	missense	N/K	107	Stx5a	ENSMUST00000176381.7:c.321T>A	ENSMUSP00000134854.1:p.Asn107Lys	H-2-Kb	9	11	1	KTFAKLEKL	NTFAKLEKL	NetMHCpan	228.1	845.3	3.706	335	0.033	439.075	1087.114	2.476	1963.04	444.39	845.3	228.1	1267.972983	586.2866429	906.2541326	433.7604991	DC1638T5	0.128571429	0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.033	335	154	4	0.025974026	19qA	chr19-7197365-61225035	5	3	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.15860717	sgMsh2	autochthonous
chr17	38274860	38274860	A	G	ENSMUST00000173841.2	2	ENSMUSG00000057443	missense	T/A	30	Olfr138	ENSMUST00000173841.2:c.88A>G	ENSMUSP00000133828.2:p.Thr30Ala	H-2-Kb	9	10	2	VALLITYPM	VTLLITYPM	SMM	310.535	427.671	1.377	241	0.075	380.446	481.888	1.267	649.03	508.72	343.8	345.7	427.6711949	310.5346024	536.1051757	415.1929781	DC1638T5	1.485714286	2.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.074	241	0	0	NA	17qB1	chr17-3077700-90208269	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.355664563	sgMsh2	autochthonous
chr16	59149380	59149380	CT	C	ENSMUST00000216957.2	2	ENSMUSG00000062608	FS	F/X	177	Olfr195	ENSMUST00000216957.2:c.535del	ENSMUSP00000150249.1:p.Cys179ValfsTer19	H-2-Kb	9	6	8	HVIKHFFVM	HVIKHFFCD	SMM	383.804	1991.178	5.188	263	0.023	397.943	9479.984	23.822	16968.79	1205.89	19495.5	384.5	1991.177609	383.8044448	1884.733717	411.386466	DC1638T5	1.3	1.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.028	263	0	0	NA	16qC1.3	chr16-3948854-96421607	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.134575781	sgMsh2	autochthonous
chr2	85331291	85331291	CA	C	ENSMUST00000216347.1	5	ENSMUSG00000075223	FS	F/X	202	Olfr987	ENSMUST00000216347.1:c.606del	ENSMUSP00000150619.1:p.Phe202LeufsTer7	H-2-Db	9	3	9	FSIMLLTVL	FSIMLLTVF	NetMHC	39.49	232.52	5.888	330	0.036	129.603	340.898	2.63	232.52	39.49	2119.4	224.4	344.8418767	130.8036913	336.9535219	128.4014713	DC1638T5	3.042857143	3.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.043	330	0	0	NA	2qD	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.206669949	sgMsh2	autochthonous
chr2	41458306	41458306	A	T	ENSMUST00000052550.12	1	ENSMUSG00000049252	missense	C/S	833	Lrp1b	ENSMUST00000052550.12:c.2497T>A	ENSMUSP00000054275.7:p.Cys833Ser	H-2-Db	9	10	2	TSTFNPEEI	TCTFNPEEI	SMMPMBEC	176.023	1491.317	8.472	166	0.06	196.739	3090.995	15.711	4633.02	187.12	4265	225	1916.990674	206.3573775	1491.317108	176.0232357	DC1638T5	-0.785714286	-0.785714286	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.072	166	0	0	NA	2qB	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.346052007	sgMsh2	autochthonous
chr3	84594125	84594125	AT	A	ENSMUST00000062623.3	NA	ENSMUSG00000047819	FS	D/X	116	Tigd4	ENSMUST00000062623.3:c.351del	ENSMUSP00000052320.3:p.Phe117LeufsTer26	H-2-Db	9	23	0	AAMVGWIVL	NA	NetMHC	209.54	NA	NA	269	0.022	274.294	NA	NA	NA	209.54	NA	226.8	NA	325.5517243	NA	321.7881152	DC1638T5	2.471428571	2.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.027	269	0	0	NA	3qF1	chr3-3641167-159911278	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.129769503	sgMsh2	autochthonous
chr3	89322736	89322736	T	G	ENSMUST00000029673.9	1	ENSMUSG00000028039	missense	H/P	33	Efna3	ENSMUST00000029673.9:c.98A>C	ENSMUSP00000029673.5:p.His33Pro	H-2-Db	9	5	7	GALGNRPAV	GALGNRHAV	SMMPMBEC	139.178	131.999	0.948	29	0.103	286.811	134.484	0.469	109.16	410.46	288	556	136.9682793	163.1623681	131.9988052	139.1778105	DC1638T5	-0.028571429	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.115	29	1	0	0	3qF1	chr3-3641167-159911278	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.552721956	sgMsh2	autochthonous
chr3	83838353	83838353	A	G	ENSMUST00000029623.10	1	ENSMUSG00000027995	missense	V/A	141	Tlr2	ENSMUST00000029623.10:c.422T>C	ENSMUSP00000029623.9:p.Val141Ala	H-2-Kb	8	11	1	ATSLFPNL	VTSLFPNL	NetMHC	31.47	7.63	0.242	106	0.094	54.864	15.879	0.289	7.63	31.47	12	35.3	19.75786438	74.42862571	23.86382195	81.79749427	DC1638T5	0.542857143	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.11	106	16	1	0.0625	3qE3	chr3-3641167-159911278	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.528690567	sgMsh2	autochthonous
chr2	87071489	87071489	A	G	ENSMUST00000214049.1	5	ENSMUSG00000075163	missense	M/T	215	Olfr1107	ENSMUST00000214049.1:c.644T>C	ENSMUSP00000150135.1:p.Met215Thr	H-2-Kb	8	10	2	VTVSYIHI	VMVSYIHI	NetMHC	31.65	41.59	1.314	362	0.022	68.349	111.726	1.635	41.59	31.65	30.2	35.6	218.6452264	120.4314735	181.861178	101.0974031	DC1638T5	1.028571429	1.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.025	362	0	0	NA	2qD	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.120156947	sgMsh2	autochthonous
chr2	75981574	75981574	T	C	ENSMUST00000099994.4	NA	ENSMUSG00000075271	missense	Y/C	55	Ttc30a1	ENSMUST00000099994.4:c.164A>G	ENSMUSP00000097574.3:p.Tyr55Cys	H-2-Kb	8	7	5	LAYCCYRL	LAYCYYRL	NetMHCpan	40.5	4.6	0.114	124	0.024	72.658	6.466	0.089	4.31	58.87	4.6	40.5	8.331822323	93.26957547	8.845858744	86.44502416	DC1638T5	0.5	0.5	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Vardict	2	0.034	124	1	0	0	2qC3	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.163413448	sgMsh2	autochthonous
chr3	30631818	30631818	T	C	ENSMUST00000029252.7	1	ENSMUSG00000027702	missense	S/G	246	Lrrc34	ENSMUST00000029252.7:c.736A>G	ENSMUSP00000029252.7:p.Ser246Gly	H-2-Kb	8	10	2	SGLRYLDV	SSLRYLDV	NetMHC	173.3	31.07	0.179	205	0.034	311.315	100.255	0.322	31.07	173.3	100.8	382.6	99.71029474	296.9887511	112.1346934	325.64169	DC1638T5	0.3	0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.032	205	0	0	NA	3qA3	chr3-3641167-159911278	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.153800892	sgMsh2	autochthonous
chr2	52714887	52714887	T	C	ENSMUST00000102759.7	1	ENSMUSG00000055371	missense	D/G	212	Stam2	ENSMUST00000102759.7:c.635A>G	ENSMUSP00000099820.1:p.Asp212Gly	H-2-Kb	8	8	4	ALYGFEAV	ALYDFEAV	NetMHCpan	229.4	189.9	0.828	138	0.087	329.841	247.126	0.749	230.17	352.19	189.9	229.4	264.0827294	335.5366776	275.2580317	324.1455024	DC1638T5	1.057142857	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.087	138	138	20	0.144927536	2qC1.1	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.418146176	sgMsh2	autochthonous
chr3	38887730	38887730	CG	C	ENSMUST00000061260.7	1	ENSMUSG00000046743	FS	A/X	257	Fat4	ENSMUST00000061260.7:c.775del	ENSMUSP00000061836.7:p.Val259CysfsTer49	H-2-Kb	8	15	0	KTQLWAPV	NA	SMMPMBEC	232.135	NA	NA	96	0.052	314.536	NA	NA	NA	375.71	NA	723.8	NA	253.3611374	NA	232.1346655	DC1638T5	0.442857143	0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.067	96	0	0	NA	3qB	chr3-3641167-159911278	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.322020618	sgMsh2	autochthonous
chr3	10437978	10437978	T	C	ENSMUST00000029047.11	1	ENSMUSG00000027534	missense	S/G	70	Snx16	ENSMUST00000029047.11:c.208A>G	ENSMUSP00000029047.6:p.Ser70Gly	H-2-Kb	8	6	6	SSMCGGPL	SSMCGSPL	SMMPMBEC	308.134	251.038	0.815	166	0.048	394.19	256.919	0.652	210.24	383.68	262.8	404.7	345.7323355	450.5468939	251.0383085	308.1342684	DC1638T5	0.714285714	0.714285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.051	166	36	1	0.027777778	3qA1	chr3-3641167-159911278	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.245120172	sgMsh2	autochthonous
chr2	85331291	85331291	CA	C	ENSMUST00000216347.1	5	ENSMUSG00000075223	FS	F/X	202	Olfr987	ENSMUST00000216347.1:c.606del	ENSMUSP00000150619.1:p.Phe202LeufsTer7	H-2-Kb	8	4	8	SIMLLTVL	SIMLLTVF	NetMHCpan	236.1	1618.9	6.857	330	0.036	403.922	3874.312	9.592	2932.03	489.86	1618.9	236.1	6898.267002	424.3654321	4816.593553	383.4775994	DC1638T5	3.042857143	3.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.043	330	0	0	NA	2qD	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.206669949	sgMsh2	autochthonous
chr2	89844667	89844667	GA	G	ENSMUST00000214428.2	5	ENSMUSG00000075072	FS	F/X	102	Olfr48	ENSMUST00000214428.2:c.305del	ENSMUSP00000150505.1:p.Phe102SerfsTer11	H-2-Kb	8	6	6	FAEHFSGL	FAEHFFGA	SMMPMBEC	189.994	3248.927	17.1	166	0.03	309.232	5784.08	18.705	13592.77	535.37	5986.8	356.2	5581.359543	262.2647967	3248.927349	189.9940498	DC1638T5	0.071428571	0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.039	166	0	0	NA	2qE1	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.187444837	sgMsh2	autochthonous
chr3	30631818	30631818	T	C	ENSMUST00000029252.7	1	ENSMUSG00000027702	missense	S/G	246	Lrrc34	ENSMUST00000029252.7:c.736A>G	ENSMUSP00000029252.7:p.Ser246Gly	H-2-Kb	8	5	7	ALYLNSGL	ALYLNSSL	SMMPMBEC	299.737	311.702	1.04	205	0.034	393.506	361.188	0.918	1012.98	945.14	319.9	398.2	402.476011	388.8123042	311.7022951	299.7367541	DC1638T5	0.771428571	0.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.032	205	0	0	NA	3qA3	chr3-3641167-159911278	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.153800892	sgMsh2	autochthonous
chr2	82989919	82989919	A	G	ENSMUST00000143764.8	5	ENSMUSG00000075249	missense	N/S	5332	Fsip2	ENSMUST00000143764.8:c.15995A>G	ENSMUSP00000120314.2:p.Asn5332Ser	H-2-Kb	9	5	7	LAIKFASSL	LAIKFANSL	NetMHCpan	27.2	51.6	1.897	221	0.023	145.234	175.418	1.208	55.64	32.77	51.6	27.2	295.1956816	257.6973782	357.4785601	296.6538575	DC1638T5	1.057142857	1.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.03	221	0	0	NA	2qD	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.144188336	sgMsh2	autochthonous
chr2	89844667	89844667	GA	G	ENSMUST00000214428.2	5	ENSMUSG00000075072	FS	F/X	102	Olfr48	ENSMUST00000214428.2:c.305del	ENSMUSP00000150505.1:p.Phe102SerfsTer11	H-2-Kb	9	5	7	VFAEHFSGL	VFAEHFFGA	NetMHC	37.19	1290.51	34.7	166	0.03	67.201	1076	16.012	1290.51	37.19	2107	72.3	680.9418088	62.10263106	861.4895227	87.75058087	DC1638T5	0.071428571	0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.039	166	0	0	NA	2qE1	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.187444837	sgMsh2	autochthonous
chr3	64089760	64089760	T	G	ENSMUST00000029406.5	1	ENSMUSG00000027824	missense	I/S	279	Vmn2r1	ENSMUST00000029406.5:c.836T>G	ENSMUSP00000029406.4:p.Ile279Ser	H-2-Kb	9	10	2	VSVLYTSDI	VIVLYTSDI	NetMHC	139.64	349.89	2.506	544	0.013	211.926	383.5	1.81	349.89	139.64	336.2	142.5	466.7775928	331.2150024	417.1094219	281.3519957	DC1638T5	0.885714286	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.014	544	3	0	0	3qE1	chr3-3641167-159911278	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.06728789	sgMsh2	autochthonous
chr3	63767542	63767542	A	G	ENSMUST00000084105.11	1	ENSMUSG00000036834	missense	L/P	217	Plch1	ENSMUST00000084105.11:c.650T>C	ENSMUSP00000081122.5:p.Leu217Pro	H-2-Kb	9	5	7	MSLRRDPYL	MSLRRDLYL	NetMHC	188.36	211.75	1.124	148	0.027	261.393	309.369	1.184	211.75	188.36	321.4	367.2	321.4474612	267.3683525	297.3377153	255.4171179	DC1638T5	-1.114285714	-1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.037	148	11	0	0	3qE1	chr3-3641167-159911278	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.177832282	sgMsh2	autochthonous
chr3	79593619	79593619	T	C	ENSMUST00000029382.12	1	ENSMUSG00000027804	missense	I/T	32	Ppid	ENSMUST00000029382.12:c.95T>C	ENSMUSP00000029382.7:p.Ile32Thr	H-2-Kb	9	11	1	TVLELFADI	IVLELFADI	NetMHCpan	285.2	107.1	0.376	129	0.023	459.708	248.51	0.541	157.2	356.75	107.1	285.2	468.9321403	803.7296686	339.8208329	562.6651281	DC1638T5	1.385714286	1.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.035	129	111	15	0.135135135	3qE3	chr3-3641167-159911278	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.168219726	sgMsh2	autochthonous
chr2	87071489	87071489	A	G	ENSMUST00000214049.1	5	ENSMUSG00000075163	missense	M/T	215	Olfr1107	ENSMUST00000214049.1:c.644T>C	ENSMUSP00000150135.1:p.Met215Thr	H-2-Kb	9	9	3	IVTVSYIHI	IVMVSYIHI	NetMHCpan	355.8	68.3	0.192	362	0.022	464.012	148.998	0.321	98.42	417.39	68.3	355.8	199.5767748	510.6343193	210.9842323	551.1248581	DC1638T5	1.028571429	2.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.025	362	0	0	NA	2qD	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.120156947	sgMsh2	autochthonous
chr4	32645296	32645296	AT	A	ENSMUST00000029950.9	1	ENSMUSG00000028282	FS	H/X	1456	Casp8ap2	ENSMUST00000029950.9:c.4371del	ENSMUSP00000029950.3:p.Phe1457LeufsTer19	H-2-Db	9	21	0	RMHLNRTFI	NA	NetMHC	5.84	NA	NA	256	0.023	19.137	NA	NA	NA	5.84	NA	24	NA	15.12237488	NA	23.15101306	DC1638T5	-0.114285714	-0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.025	256	38	1	0.026315789	4qA5	chr4-3834436-156200568	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.120156947	sgMsh2	autochthonous
chr5	66452088	66452088	A	G	ENSMUST00000162349.7	5	ENSMUSG00000029207	missense	L/P	72	Apbb2	ENSMUST00000162349.7:c.215T>C	ENSMUSP00000123752.2:p.Leu72Pro	H-2-Db	9	9	3	YAPTNIQAA	YALTNIQAA	NetMHC	42.26	13.55	0.321	156	0.103	180.963	52.456	0.29	13.55	42.26	42.6	158.4	62.60658284	203.5260481	62.3117574	207.2860138	DC1638T5	-0.171428571	-0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.108	156	61	12	0.196721311	5qC3.1	chr5-3344423-150466497	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.519078011	sgMsh2	autochthonous
chr5	140705138	140705138	A	C	ENSMUST00000100505.2	1	ENSMUSG00000000148	missense	I/L	10	Brat1	ENSMUST00000100505.2:c.28A>C	ENSMUSP00000098074.2:p.Ile10Leu	H-2-Db	9	4	7	FALSGLLPV	FALSGLIPV	NetMHC	63.62	42.94	0.675	91	0.066	158.405	168.305	1.063	42.94	63.62	109.3	109.5	227.3107631	207.3098799	252.6794949	232.0438166	DC1638T5	1.828571429	2.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.083	91	5	0	0	5qG2	chr5-3344423-150466497	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.398921064	sgMsh2	autochthonous
chr4	139479024	139479024	A	C	ENSMUST00000097822.9	5	ENSMUSG00000066036	missense	N/T	4881	Ubr4	ENSMUST00000097822.9:c.14642A>C	ENSMUSP00000095433.3:p.Asn4881Thr	H-2-Db	9	4	8	YSTVSHFTI	YSTVSHFNI	NetMHC	128.36	1557.62	12.135	150	0.047	369.251	1659.028	4.493	1557.62	128.36	1443.8	251.4	1760.435023	487.1020979	1847.438543	531.5816734	DC1638T5	0.871428571	0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.06	150	159	8	0.050314465	4qD3	chr4-3834436-156200568	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.288376673	sgMsh2	autochthonous
chr5	144994072	144994072	G	A	ENSMUST00000110673.7	5	ENSMUSG00000038770	missense	P/L	321	Kpna7	ENSMUST00000110673.7:c.962C>T	ENSMUSP00000106301.1:p.Pro321Leu	H-2-Db	9	8	4	ISILCLHTI	ISIPCLHTI	NetMHC	215.91	700.16	3.243	69	0.145	352.656	960.006	2.722	700.16	215.91	996.7	354.1	932.4380769	366.9610755	987.5748012	351.2125287	DC1638T5	2.171428571	2.171428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.159	69	0	0	NA	5qG2	chr5-3344423-150466497	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.764198183	sgMsh2	autochthonous
chr5	139807692	139807692	A	T	ENSMUST00000044002.9	1	ENSMUSG00000036687	missense	I/N	218	Tmem184a	ENSMUST00000044002.9:c.653T>A	ENSMUSP00000035399.4:p.Ile218Asn	H-2-Db	9	7	5	LQFCNVKPV	LQFCIVKPV	NetMHCpan	127	4480.8	35.282	215	0.033	416.509	20473.72	49.155	18058.8	349.27	4480.8	127	22888.64061	483.7489106	26950.69691	551.5310915	DC1638T5	0.671428571	0.671428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.036	215	25	0	0	5qG2	chr5-3344423-150466497	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.173026004	sgMsh2	autochthonous
chr5	122261503	122261503	A	G	ENSMUST00000111738.7	1	ENSMUSG00000038593	missense	L/P	86	Tctn1	ENSMUST00000111738.7:c.257T>C	ENSMUSP00000107367.3:p.Leu86Pro	H-2-Db	9	4	8	AALCVCDPL	AALCVCDLL	NetMHCpan	146	841.9	5.766	162	0.043	183.241	760.216	4.149	5586.1	959.42	841.9	146	521.9393015	162.0391663	678.531478	204.4419431	DC1638T5	1.671428571	1.871428571	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;Vardict	3	0.047	162	10	0	0	5qF	chr5-3344423-150466497	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.22589506	sgMsh2	autochthonous
chr4	137652625	137652625	G	A	ENSMUST00000153869.1	2	ENSMUSG00000043411	missense	C/Y	97	Usp48	ENSMUST00000153869.1:c.288G>A	ENSMUSP00000117989.1:p.Cys97Tyr	H-2-Kb	8	9	3	TVYHFFEL	TVCHFFEL	NetMHCpan	4.5	123.5	27.444	159	0.05	10.152	151.658	14.939	447.11	7.28	123.5	4.5	173.6760767	14.74823333	129.6402918	13.02386842	DC1638T5	0.8	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.055	159	3	0	0	4qD3	chr4-3834436-156200568	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.264345283	sgMsh2	autochthonous
chr5	139807692	139807692	A	T	ENSMUST00000044002.9	1	ENSMUSG00000036687	missense	I/N	218	Tmem184a	ENSMUST00000044002.9:c.653T>A	ENSMUSP00000035399.4:p.Ile218Asn	H-2-Kb	8	5	7	ATLQFCNV	ATLQFCIV	NetMHC	20.25	568.04	28.051	215	0.033	38.542	289.48	7.511	568.04	20.25	247.1	39	259.2626764	38.08377582	319.6980594	42.82920371	DC1638T5	0.8	0.8	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.036	215	25	0	0	5qG2	chr5-3344423-150466497	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.173026004	sgMsh2	autochthonous
chr4	11221120	11221120	T	C	ENSMUST00000044616.9	1	ENSMUSG00000040738	missense	M/V	752	Ints8	ENSMUST00000044616.9:c.2254A>G	ENSMUSP00000038418.3:p.Met752Val	H-2-Kb	8	10	2	IVYRSELL	IMYRSELL	NetMHC	27.39	23.89	0.872	259	0.116	64.598	70.81	1.096	23.89	27.39	27.4	30.4	114.219433	98.79614526	131.4437679	106.8415057	DC1638T5	0.242857143	0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.115	259	90	11	0.122222222	4qA1	chr4-3834436-156200568	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.552721956	sgMsh2	autochthonous
chr6	8013113	8013113	AT	A	ENSMUST00000115537.1	1	ENSMUSG00000068794	FS	I/X	980	Col28a1	ENSMUST00000115537.1:c.2938del	ENSMUSP00000111199.1:p.Ile980PhefsTer59	H-2-Kb	8	39	0	SAYPLQSL	NA	NetMHC	32.49	NA	NA	107	0.374	67.366	NA	NA	NA	32.49	NA	34.1	NA	100.6329027	NA	158.0301673	DC1638T5	0.314285714	0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.391	107	0	0	NA	6qA1	chr6-3494310-113068119	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	2	1	sgMsh2	autochthonous
chr5	136968233	136968233	A	T	ENSMUST00000111093.7	5	ENSMUSG00000001739	missense	T/S	43	Cldn15	ENSMUST00000111093.7:c.127A>T	ENSMUSP00000106722.1:p.Thr43Ser	H-2-Kb	8	9	3	TNSIFENL	TNTIFENL	NetMHCpan	123.7	108.9	0.88	179	0.017	148.015	104.535	0.706	68.65	125.13	108.9	123.7	100.1705365	170.8991883	130.5389154	204.9934573	DC1638T5	-0.028571429	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.024	179	0	0	NA	5qG2	chr5-3344423-150466497	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.115350669	sgMsh2	autochthonous
chr4	139455590	139455590	A	G	ENSMUST00000097822.9	5	ENSMUSG00000066036	missense	N/S	3588	Ubr4	ENSMUST00000097822.9:c.10763A>G	ENSMUSP00000095433.3:p.Asn3588Ser	H-2-Kb	8	10	2	ISLYYNNR	INLYYNNR	SMM	96.325	178.131	1.849	175	0.091	169.237	424.619	2.509	531.74	186.16	4283.8	2941.5	178.1312026	96.32521787	317.4972734	152.3140619	DC1638T5	-1.585714286	-0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.092	175	73	11	0.150684932	4qD3	chr4-3834436-156200568	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.442177565	sgMsh2	autochthonous
chr5	120600156	120600156	A	G	ENSMUST00000094391.5	1	ENSMUSG00000029601	missense	H/R	13	Iqcd	ENSMUST00000094391.5:c.38A>G	ENSMUSP00000091955.4:p.His13Arg	H-2-Kb	8	6	6	IPPSYRGL	IPPSYHGL	SMM	94.785	105.133	1.109	108	0.093	152.047	252.304	1.659	378.21	191.96	903.4	1282.9	105.1332282	94.78508415	126.3979412	112.1346934	DC1638T5	-0.914285714	-0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.1	108	0	0	NA	5qF	chr5-3344423-150466497	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.480627788	sgMsh2	autochthonous
chr5	33667086	33667086	A	C	ENSMUST00000074849.12	1	ENSMUSG00000037313	missense	K/T	352	Tacc3	ENSMUST00000074849.12:c.1055A>C	ENSMUSP00000074394.6:p.Lys352Thr	H-2-Kb	8	7	5	SAWRTQSL	SAWRKQSL	NetMHCpan	215.6	346.8	1.609	195	0.036	359.953	663.353	1.843	577.26	320.2	346.8	215.6	825.5435717	448.476819	749.4454029	399.7053856	DC1638T5	-0.685714286	-0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.039	195	158	7	0.044303797	5qB2	chr5-3344423-150466497	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.187444837	sgMsh2	autochthonous
chr5	120600156	120600156	A	G	ENSMUST00000094391.5	1	ENSMUSG00000029601	missense	H/R	13	Iqcd	ENSMUST00000094391.5:c.38A>G	ENSMUSP00000091955.4:p.His13Arg	H-2-Kb	9	5	7	SIPPSYRGL	SIPPSYHGL	NetMHC	80.17	159.93	1.995	108	0.093	386.969	360.796	0.932	159.93	80.17	208.6	231.8	512.9913002	542.1381881	762.5178243	845.7655669	DC1638T5	-0.914285714	-0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.1	108	0	0	NA	5qF	chr5-3344423-150466497	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.480627788	sgMsh2	autochthonous
chr4	11221120	11221120	T	C	ENSMUST00000044616.9	1	ENSMUSG00000040738	missense	M/V	752	Ints8	ENSMUST00000044616.9:c.2254A>G	ENSMUSP00000038418.3:p.Met752Val	H-2-Kb	9	8	4	LGIVYRSEL	LGIMYRSEL	NetMHCpan	101.3	72	0.711	259	0.116	281.003	266.567	0.949	102.36	110.93	72	101.3	539.6472894	458.2579416	430.7745129	451.0762902	DC1638T5	0.342857143	0.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.115	259	90	11	0.122222222	4qA1	chr4-3834436-156200568	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.552721956	sgMsh2	autochthonous
chr5	140705138	140705138	A	C	ENSMUST00000100505.2	1	ENSMUSG00000000148	missense	I/L	10	Brat1	ENSMUST00000100505.2:c.28A>C	ENSMUSP00000098074.2:p.Ile10Leu	H-2-Kb	9	2	9	VHFALSGLL	VHFALSGLI	NetMHCpan	98.8	326.5	3.305	91	0.066	162.279	427.923	2.637	367.07	127.72	326.5	98.8	488.776143	196.8384788	546.072115	236.1837425	DC1638T5	2.114285714	2.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.083	91	5	0	0	5qG2	chr5-3344423-150466497	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.398921064	sgMsh2	autochthonous
chr4	139479024	139479024	A	C	ENSMUST00000097822.9	5	ENSMUSG00000066036	missense	N/T	4881	Ubr4	ENSMUST00000097822.9:c.14642A>C	ENSMUSP00000095433.3:p.Asn4881Thr	H-2-Kb	9	5	7	STVSHFTIV	STVSHFNIV	NetMHC	127.85	180.11	1.409	150	0.047	216.841	283.071	1.305	180.11	127.85	327.3	173.6	238.8416155	260.0818226	349.3413547	333.6184037	DC1638T5	1.571428571	1.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.06	150	159	8	0.050314465	4qD3	chr4-3834436-156200568	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.288376673	sgMsh2	autochthonous
chr4	148463720	148463720	A	G	ENSMUST00000103221.9	1	ENSMUSG00000028991	missense	T/A	481	Mtor	ENSMUST00000103221.9:c.1441A>G	ENSMUSP00000099510.3:p.Thr481Ala	H-2-Kb	9	11	1	AVFTCISML	TVFTCISML	NetMHC	130.55	112.4	0.861	102	0.049	201.636	162.668	0.807	112.4	130.55	102.5	135.2	265.5278017	312.6871254	212.9364454	268.0711022	DC1638T5	2	2.057142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.053	102	12	0	0	4qE2	chr4-3834436-156200568	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.254732728	sgMsh2	autochthonous
chr5	108847685	108847685	AT	A	ENSMUST00000170419.2	5	ENSMUSG00000091624	FS	M/X	366	Vmn2r9	ENSMUST00000170419.2:c.1096del	ENSMUSP00000129520.1:p.Met366TrpfsTer20	H-2-Kb	9	6	6	NSYSKWIIL	NSYSKMDHL	SMM	109.676	252.412	2.301	485	0.019	137.418	265.592	1.933	468.59	160.79	223.9	133.5	252.4120012	109.6755952	278.7725451	141.3350901	DC1638T5	0.842857143	0.842857143	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Vardict	2	0.02	485	0	0	NA	5qF	chr5-3344423-150466497	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.096125558	sgMsh2	autochthonous
chr4	137652625	137652625	G	A	ENSMUST00000153869.1	2	ENSMUSG00000043411	missense	C/Y	97	Usp48	ENSMUST00000153869.1:c.288G>A	ENSMUSP00000117989.1:p.Cys97Tyr	H-2-Kb	9	8	4	HTVYHFFEL	HTVCHFFEL	NetMHCpan	147.5	257.3	1.744	159	0.05	268.191	404.288	1.507	558.51	258.34	257.3	147.5	384.6892055	278.0417415	423.8869047	337.4815227	DC1638T5	0.8	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.055	159	3	0	0	4qD3	chr4-3834436-156200568	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.264345283	sgMsh2	autochthonous
chr4	139479024	139479024	A	C	ENSMUST00000097822.9	5	ENSMUSG00000066036	missense	N/T	4881	Ubr4	ENSMUST00000097822.9:c.14642A>C	ENSMUSP00000095433.3:p.Asn4881Thr	H-2-Kb	9	11	1	TIVHYDCHL	NIVHYDCHL	NetMHC	334.47	2083.02	6.228	150	0.047	459.253	1873.427	4.079	2083.02	334.47	2575.7	509.2	1663.83402	507.1191374	1517.923903	411.386466	DC1638T5	-0.1	0.357142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.06	150	159	8	0.050314465	4qD3	chr4-3834436-156200568	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.288376673	sgMsh2	autochthonous
chr4	117052761	117052761	GA	G	ENSMUST00000106448.8	5	ENSMUSG00000028683	FS	G/X	164	Eif2b3	ENSMUST00000106448.8:c.496del	ENSMUSP00000102056.2:p.Arg166GlyfsTer42	H-2-Kb	9	38	0	LGYISTQAL	NA	NetMHCpan	237.6	NA	NA	127	0.15	484.339	NA	NA	NA	380.85	NA	237.6	NA	638.4251688	NA	587.8276359	DC1638T5	0.542857143	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.146	127	64	0	0	4qD1	chr4-3834436-156200568	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.70171657	sgMsh2	autochthonous
chr4	137652625	137652625	G	A	ENSMUST00000153869.1	2	ENSMUSG00000043411	missense	C/Y	97	Usp48	ENSMUST00000153869.1:c.288G>A	ENSMUSP00000117989.1:p.Cys97Tyr	H-2-Kb	9	9	3	TVYHFFELR	TVCHFFELR	SMM	266.753	3041.655	11.402	159	0.05	375.274	5152.953	13.731	7264.25	393.07	17001.7	2587.4	3041.655332	266.7534224	2565.960697	357.4785601	DC1638T5	-0.442857143	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.055	159	3	0	0	4qD3	chr4-3834436-156200568	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.264345283	sgMsh2	autochthonous
chr4	32645296	32645296	AT	A	ENSMUST00000029950.9	1	ENSMUSG00000028282	FS	H/X	1456	Casp8ap2	ENSMUST00000029950.9:c.4371del	ENSMUSP00000029950.3:p.Phe1457LeufsTer19	H-2-Kb	9	7	6	VISAHLVRM	VISAHFSED	SMMPMBEC	335.931	863.475	2.57	256	0.023	358.234	6848.741	19.118	12816.21	421.13	15555.6	338.8	881.2720572	377.6678362	863.4754612	335.930936	DC1638T5	0.457142857	2.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.025	256	38	1	0.026315789	4qA5	chr4-3834436-156200568	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.120156947	sgMsh2	autochthonous
chr5	110297024	110297024	T	G	ENSMUST00000007296.11	1	ENSMUSG00000007080	missense	S/R	415	Pole	ENSMUST00000007296.11:c.1245T>G	ENSMUSP00000007296.5:p.Ser415Arg	H-2-Kb	9	7	5	VKRDRYLPV	VKRDSYLPV	SMMPMBEC	203.353	789.314	3.882	135	0.104	365.46	1143.242	3.128	1497.17	519.03	3769.9	2108.8	729.6422938	211.8897751	789.3143527	203.3527266	DC1638T5	-1.057142857	-1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.121	135	15	4	0.266666667	5qF	chr5-3344423-150466497	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.581559623	sgMsh2	autochthonous
chr4	143132303	143132303	GT	G	ENSMUST00000105778.7	5	ENSMUSG00000057637	FS	K/X	1472	Prdm2	ENSMUST00000105778.7:c.4416del	ENSMUSP00000101404.1:p.Lys1472AsnfsTer93	H-2-Kb	9	27	0	VATHHLPAV	NA	SMM	361.501	NA	NA	175	0.051	488.682	NA	NA	NA	588.99	NA	904.7	NA	361.5014137	NA	388.3738676	DC1638T5	0.157142857	0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.061	175	77	3	0.038961039	4qE1	chr4-3834436-156200568	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.293182951	sgMsh2	autochthonous
chr5	121437694	121437694	T	A	ENSMUST00000042163.14	1	ENSMUSG00000042719	missense	F/I	843	Naa25	ENSMUST00000042163.14:c.2527T>A	ENSMUSP00000038977.8:p.Phe843Ile	H-2-Kb	9	10	2	VIFVETISV	VFFVETISV	SMM	363.17	476.552	1.312	172	0.041	453.889	681.242	1.501	689.12	616.93	711.2	410.9	476.5516746	363.1700284	673.3641643	496.8782653	DC1638T5	1.528571429	2.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.045	172	98	0	0	5qF	chr5-3344423-150466497	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.216282505	sgMsh2	autochthonous
chr5	147886663	147886663	T	C	ENSMUST00000031655.3	1	ENSMUSG00000029650	missense	Y/C	123	Slc46a3	ENSMUST00000031655.3:c.368A>G	ENSMUSP00000031655.3:p.Tyr123Cys	H-2-Kb	9	8	4	MMSCFDLPL	MMSYFDLPL	SMM	300.684	217.325	0.723	172	0.11	331.015	242.39	0.732	392.32	654.17	160.9	326.1	217.325156	300.6837791	267.4545558	335.930936	DC1638T5	1	1.228571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.112	172	5	0	0	5qG3	chr5-3344423-150466497	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.538303123	sgMsh2	autochthonous
chr4	107192510	107192510	A	T	ENSMUST00000030361.10	1	ENSMUSG00000028618	missense	N/Y	198	Tmem59	ENSMUST00000030361.10:c.592A>T	ENSMUSP00000030361.4:p.Asn198Tyr	H-2-Kb	9	9	3	PTYLRESSL	PTNLRESSL	SMM	89.353	877.223	9.817	179	0.022	405.85	4971.839	12.25	8924.5	697.61	18671.3	1282.5	877.2229799	89.35317727	1019.177905	114.0906357	DC1638T5	-0.471428571	-0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.03	179	1430	97	0.067832168	4qC7	chr4-3834436-156200568	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.144188336	sgMsh2	autochthonous
chr6	8013113	8013113	AT	A	ENSMUST00000115537.1	1	ENSMUSG00000068794	FS	I/X	980	Col28a1	ENSMUST00000115537.1:c.2938del	ENSMUSP00000111199.1:p.Ile980PhefsTer59	H-2-Kb	10	18	0	ISFKFLDHHL	NA	NetMHCpan	12.2	NA	NA	107	0.374	327.464	NA	NA	NA	22.72	NA	12.2	NA	919.0306595	NA	632.2080187	DC1638T5	-0.485714286	0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.391	107	0	0	NA	6qA1	chr6-3494310-113068119	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	2	1	sgMsh2	autochthonous
chr7	65342685	65342685	A	C	ENSMUST00000102592.9	1	ENSMUSG00000030516	missense	S/A	82	Tjp1	ENSMUST00000102592.9:c.244T>G	ENSMUSP00000099652.3:p.Ser82Ala	H-2-Db	9	4	8	VAMVNGVAM	VAMVNGVSM	NetMHC	3.91	4.56	1.166	279	0.047	9.92	11.961	1.206	4.56	3.91	6.6	6.7	17.32287613	13.14074537	20.07104571	14.77644631	DC1638T5	1.442857143	1.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.038	279	80	1	0.0125	7qC	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.182638559	sgMsh2	autochthonous
chr7	47082784	47082784	T	C	ENSMUST00000033142.12	1	ENSMUSG00000030854	missense	T/A	375	Ptpn5	ENSMUST00000033142.12:c.1123A>G	ENSMUSP00000033142.5:p.Thr375Ala	H-2-Db	9	8	4	VMIANIEEM	VMITNIEEM	NetMHC	6.02	5.39	0.895	103	0.126	13.785	14.16	1.027	5.39	6.02	11	11.7	17.4028349	15.94483392	17.32088188	15.86974688	DC1638T5	0.314285714	1.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.124	103	3	1	0.333333333	7qB3	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.595978457	sgMsh2	autochthonous
chr7	25628455	25628455	AC	A	ENSMUST00000076034.7	1	ENSMUSG00000059479	FS	Y/X	103	B3gnt8	ENSMUST00000076034.7:c.313del	ENSMUSP00000092277.4:p.Gln105ArgfsTer55	H-2-Db	9	53	0	LSNQNQDTL	NA	NetMHC	23.95	NA	NA	99	0.04	49.328	NA	NA	NA	23.95	NA	46.1	NA	52.55572119	NA	56.6982951	DC1638T5	-2.057142857	-2.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.057	99	4	0	0	7qA3	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.273957839	sgMsh2	autochthonous
chr7	28378108	28378108	T	G	ENSMUST00000051241.6	1	ENSMUSG00000044786	missense	E/A	137	Zfp36	ENSMUST00000051241.6:c.410A>C	ENSMUSP00000057815.5:p.Glu137Ala	H-2-Db	9	10	2	TALCHKFYL	TELCHKFYL	NetMHCpan	89.3	4168.4	46.679	150	0.053	299.964	6956.664	23.192	7653.39	263.75	4168.4	89.3	8234.173241	388.7048862	6259.937541	336.1785503	DC1638T5	0.642857143	0.642857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.066	150	123	12	0.097560976	7qA3	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.31721434	sgMsh2	autochthonous
chr7	65342685	65342685	A	C	ENSMUST00000102592.9	1	ENSMUSG00000030516	missense	S/A	82	Tjp1	ENSMUST00000102592.9:c.244T>G	ENSMUSP00000099652.3:p.Ser82Ala	H-2-Db	9	10	2	VAMDNVEHA	VSMDNVEHA	NetMHCpan	311.7	519.8	1.668	279	0.047	495.027	822.833	1.662	2793.51	1295.12	519.8	311.7	884.341488	536.5621085	761.3248402	453.4923862	DC1638T5	-0.828571429	0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.038	279	80	1	0.0125	7qC	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.182638559	sgMsh2	autochthonous
chr7	108646376	108646376	GA	G	ENSMUST00000213756.1	5	ENSMUSG00000049280	FS	S/X	67	Olfr509	ENSMUST00000213756.1:c.199del	ENSMUSP00000149663.1:p.Ser67GlnfsTer8	H-2-Kb	8	9	3	SFQKHAPL	NA	NetMHC	45.2	NA	NA	238	0.143	68.423	NA	NA	NA	45.2	NA	186.6	NA	55.04780419	NA	81.79749427	DC1638T5	-0.542857143	-0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.14	238	0	0	NA	7qE3	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.672878903	sgMsh2	autochthonous
chr7	47589840	47589840	A	T	ENSMUST00000176369.1	1	ENSMUSG00000078698	missense	C/S	113	Mrgpra3	ENSMUST00000176369.1:c.337T>A	ENSMUSP00000135437.1:p.Cys113Ser	H-2-Kb	8	8	4	FAFSFHTI	FAFCFHTI	NetMHCpan	19.2	29.1	1.516	290	0.031	76.776	128.682	1.676	133.9	61.35	29.1	19.2	124.0909187	93.70008827	133.2723329	92.20192747	DC1638T5	1.028571429	1.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.036	290	0	0	NA	7qB3	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.173026004	sgMsh2	autochthonous
chr7	27197026	27197026	T	C	ENSMUST00000179391.7	5	ENSMUSG00000078786	missense	C/R	5	BC024978	ENSMUST00000179391.7:c.13T>C	ENSMUSP00000137189.1:p.Cys5Arg	H-2-Kb	8	2	4	TSPRSFPL	TSPCSFPL	NetMHC	93.19	314.89	3.379	59	0.051	168.6	325.988	1.934	314.89	93.19	277.3	166.3	337.0854446	170.8991883	436.2545806	199.4068165	DC1638T5	-0.385714286	-0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.074	59	19	1	0.052631579	7qA3	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.355664563	sgMsh2	autochthonous
chr7	47082784	47082784	T	C	ENSMUST00000033142.12	1	ENSMUSG00000030854	missense	T/A	375	Ptpn5	ENSMUST00000033142.12:c.1123A>G	ENSMUSP00000033142.5:p.Thr375Ala	H-2-Kb	8	6	6	IIVMIANI	IIVMITNI	NetMHCpan	160.5	321	2	103	0.126	260.026	886.95	3.411	751.22	169.51	321	160.5	1769.049561	619.070344	1022.680559	350.5419514	DC1638T5	2.557142857	2.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.124	103	3	1	0.333333333	7qB3	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.595978457	sgMsh2	autochthonous
chr7	16563481	16563481	T	A	ENSMUST00000075845.10	1	ENSMUSG00000058230	missense	H/L	553	Arhgap35	ENSMUST00000075845.10:c.1658A>T	ENSMUSP00000075242.4:p.His553Leu	H-2-Kb	8	4	8	KHIHFVYL	KHIHFVYH	NetMHCpan	78.1	8791.3	112.565	200	0.05	115.465	11552.304	100.05	18785.23	174.61	8791.3	78.1	14313.30745	119.0529058	4838.825938	111.8767908	DC1638T5	1.085714286	1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.051	200	99	0	0	7qA2	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.245120172	sgMsh2	autochthonous
chr7	16563481	16563481	T	A	ENSMUST00000075845.10	1	ENSMUSG00000058230	missense	H/L	553	Arhgap35	ENSMUST00000075845.10:c.1658A>T	ENSMUSP00000075242.4:p.His553Leu	H-2-Kb	8	6	6	IHFVYLPT	IHFVYHPT	SMMPMBEC	87.648	73.239	0.836	200	0.05	160.808	140.142	0.871	168.15	255.64	218	186.8	112.1346934	134.8155538	73.23859428	87.64759423	DC1638T5	0.571428571	1.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.051	200	99	0	0	7qA2	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.245120172	sgMsh2	autochthonous
chr7	25628455	25628455	AC	A	ENSMUST00000076034.7	1	ENSMUSG00000059479	FS	Y/X	103	B3gnt8	ENSMUST00000076034.7:c.313del	ENSMUSP00000092277.4:p.Gln105ArgfsTer55	H-2-Kb	8	25	0	GAFHYGCL	NA	NetMHCpan	89	NA	NA	99	0.04	132.885	NA	NA	NA	271.22	NA	89	NA	168.5543635	NA	97.21650414	DC1638T5	0.857142857	0.857142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.057	99	4	0	0	7qA3	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.273957839	sgMsh2	autochthonous
chr7	25628455	25628455	AC	A	ENSMUST00000076034.7	1	ENSMUSG00000059479	FS	Y/X	103	B3gnt8	ENSMUST00000076034.7:c.313del	ENSMUSP00000092277.4:p.Gln105ArgfsTer55	H-2-Kb	8	36	0	AALWPAAL	NA	NetMHC	273.21	NA	NA	99	0.04	351.108	NA	NA	NA	273.21	NA	417.4	NA	302.5101842	NA	399.7053856	DC1638T5	1.5	1.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.057	99	4	0	0	7qA3	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.273957839	sgMsh2	autochthonous
chr7	46850221	46850221	CG	C	ENSMUST00000209984.1	1	ENSMUSG00000063229	FS	A/X	125	Ldha	ENSMUST00000209984.1:c.379del	ENSMUSP00000148107.1:p.Ala127ProfsTer17	H-2-Kb	8	7	7	VIITAGPV	VIITAGAR	NetMHC	274.2	16621.9	60.62	107	0.084	294.966	10558.503	35.796	16621.9	274.2	20777.2	726.8	2634.75356	280.3754606	4495.106648	309.5565516	DC1638T5	1.757142857	1.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.106	107	4351	13	0.002987819	7qB3	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.509465455	sgMsh2	autochthonous
chr7	100507496	100507496	A	T	ENSMUST00000207405.1	1	ENSMUSG00000030708	missense	N/K	124	Dnajb13	ENSMUST00000207405.1:c.372T>A	ENSMUSP00000147019.1:p.Asn124Lys	H-2-Kb	8	8	4	IDLKFGGL	IDLNFGGL	SMMPMBEC	70.589	64.676	0.916	98	0.061	188.251	154.804	0.822	242.35	303.74	441.7	297.3	67.25738845	79.2027024	64.67553055	70.58948282	DC1638T5	0.314285714	0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.062	98	3	0	0	7qE2	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.297989229	sgMsh2	autochthonous
chr6	24796122	24796122	T	C	ENSMUST00000202569.3	1	ENSMUSG00000029682	missense	V/A	24	Spam1	ENSMUST00000202569.3:c.71T>C	ENSMUSP00000143970.1:p.Val24Ala	H-2-Kb	8	10	2	TALIFLLI	TVLIFLLI	NetMHCpan	237.4	403.5	1.7	201	0.04	397.921	407.202	1.023	632.71	417.24	403.5	237.4	410.9036509	404.3337559	362.0261985	391.5074224	DC1638T5	3.571428571	3.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.037	201	0	0	NA	6qA3.1	chr6-3494310-113068119	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.177832282	sgMsh2	autochthonous
chr7	44581317	44581317	T	A	ENSMUST00000002274.9	1	ENSMUSG00000002204	missense	V/E	63	Napsa	ENSMUST00000002274.9:c.188T>A	ENSMUSP00000002274.8:p.Val63Glu	H-2-Kb	8	6	6	GNPSFEPL	GNPSFVPL	SMMPMBEC	350.542	139.232	0.397	211	0.019	422.767	138.066	0.327	96.36	434.63	136.9	671.2	170.1139779	410.9036509	139.2323008	350.5419514	DC1638T5	-0.628571429	-0.628571429	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Vardict	2	0.025	211	1096	1	0.000912409	7qB3	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.120156947	sgMsh2	autochthonous
chr8	27407022	27407022	T	C	ENSMUST00000033882.9	1	ENSMUSG00000031491	missense	I/V	276	Chrna6	ENSMUST00000033882.9:c.826A>G	ENSMUSP00000033882.8:p.Ile276Val	H-2-Kb	8	7	5	VTLCVSVL	VTLCISVL	SMM	205.466	470.695	2.291	212	0.028	336.283	466.932	1.389	971.23	654.22	285.8	395.4	470.6954498	205.466016	463.16955	277.1660292	DC1638T5	2.428571429	2.485714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.036	212	0	0	NA	8qA2	chr8-3436940-126969919	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.173026004	sgMsh2	autochthonous
chr7	28117547	28117547	A	G	ENSMUST00000076648.7	5	ENSMUSG00000047730	missense	D/G	2478	Fcgbp	ENSMUST00000076648.7:c.7433A>G	ENSMUSP00000075945.7:p.Asp2478Gly	H-2-Kb	8	6	6	HIFFQGGL	HIFFQDGL	SMM	339.422	797.517	2.35	124	0.113	477.961	1267.794	2.653	2914.5	910.74	1444.8	561.7	797.5170931	339.4220093	1090.787117	394.2212222	DC1638T5	1.371428571	1.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.111	124	5	0	0	7qA3	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.533496845	sgMsh2	autochthonous
chr7	108646376	108646376	GA	G	ENSMUST00000213756.1	5	ENSMUSG00000049280	FS	S/X	67	Olfr509	ENSMUST00000213756.1:c.199del	ENSMUSP00000149663.1:p.Ser67GlnfsTer8	H-2-Kb	9	8	4	LSFQKHAPL	NA	NetMHC	5.58	NA	NA	238	0.143	24.734	NA	NA	NA	5.58	NA	10	NA	54.96800816	NA	39.46844353	DC1638T5	-0.542857143	-0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.14	238	0	0	NA	7qE3	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.672878903	sgMsh2	autochthonous
chr7	28117547	28117547	A	G	ENSMUST00000076648.7	5	ENSMUSG00000047730	missense	D/G	2478	Fcgbp	ENSMUST00000076648.7:c.7433A>G	ENSMUSP00000075945.7:p.Asp2478Gly	H-2-Kb	9	5	7	VHIFFQGGL	VHIFFQDGL	NetMHC	44.05	106.91	2.427	124	0.113	111.435	217.992	1.956	106.91	44.05	168	59.9	267.9847002	162.970876	295.9715726	171.0999962	DC1638T5	1.371428571	1.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.111	124	5	0	0	7qA3	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.533496845	sgMsh2	autochthonous
chr7	85619544	85619544	T	A	ENSMUST00000172338.2	5	ENSMUSG00000091205	missense	F/L	318	Vmn2r71	ENSMUST00000172338.2:c.954T>A	ENSMUSP00000132337.1:p.Phe318Leu	H-2-Kb	9	3	9	LLYSYTGTL	LLYSYTGTF	NetMHCpan	46.4	151.2	3.259	387	0.018	160.489	379.512	2.365	366.28	88.11	151.2	46.4	392.7443988	232.8681001	409.4963169	236.7282022	DC1638T5	-0.2	0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.022	387	0	0	NA	7qD3	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.105738113	sgMsh2	autochthonous
chr7	141996923	141996923	A	G	ENSMUST00000075528.11	1	ENSMUSG00000053046	missense	N/D	528	Brsk2	ENSMUST00000075528.11:c.1582A>G	ENSMUSP00000074969.5:p.Asn528Asp	H-2-Kb	9	4	8	SWFGNFIDL	SWFGNFINL	SMM	80.744	38.38	0.475	121	0.041	98.347	43.19	0.439	26.35	89.48	48	156.9	38.38044448	80.74395162	63.13206573	107.2136299	DC1638T5	0.928571429	0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.057	121	0	0	NA	7qF5	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.273957839	sgMsh2	autochthonous
chr7	126575210	126575210	A	G	ENSMUST00000084589.10	1	ENSMUSG00000030720	missense	Y/H	319	Cln3	ENSMUST00000084589.10:c.955T>C	ENSMUSP00000081636.4:p.Tyr319His	H-2-Kb	9	9	3	QQHRWYQML	QQYRWYQML	NetMHC	98.23	8.35	0.085	163	0.043	318.266	39.684	0.125	8.35	98.23	22.6	313.6	56.76883738	322.9311952	77.84845538	422.9119919	DC1638T5	-1.1	-1.1	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.047	163	67	0	0	7qF3	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.22589506	sgMsh2	autochthonous
chr7	25628455	25628455	AC	A	ENSMUST00000076034.7	1	ENSMUSG00000059479	FS	Y/X	103	B3gnt8	ENSMUST00000076034.7:c.313del	ENSMUSP00000092277.4:p.Gln105ArgfsTer55	H-2-Kb	9	24	0	VGAFHYGCL	NA	NetMHCpan	69.1	NA	NA	99	0.04	106.092	NA	NA	NA	111.2	NA	69.1	NA	135.865753	NA	100.9834026	DC1638T5	0.857142857	0.857142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.057	99	4	0	0	7qA3	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.273957839	sgMsh2	autochthonous
chr7	141482534	141482534	T	C	ENSMUST00000026585.13	1	ENSMUSG00000025511	missense	Y/H	11	Tspan4	ENSMUST00000026585.13:c.31T>C	ENSMUSP00000026585.7:p.Tyr11His	H-2-Kb	9	10	2	KHLMFAFNL	KYLMFAFNL	NetMHCpan	76.7	131.4	1.713	133	0.045	408.527	354.661	0.868	221.67	140.8	131.4	76.7	487.6519891	676.2542383	653.5066331	863.4754612	DC1638T5	1.914285714	1.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.05	133	134	3	0.02238806	7qF5	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.240313894	sgMsh2	autochthonous
chr7	30728059	30728059	T	C	ENSMUST00000006478.9	1	ENSMUSG00000006315	missense	D/G	160	Tmem147	ENSMUST00000006478.9:c.479A>G	ENSMUSP00000006478.8:p.Asp160Gly	H-2-Kb	9	4	8	VWMITRYGL	VWMITRYDL	NetMHC	179.5	422.13	2.352	199	0.02	297.091	523.831	1.763	422.13	179.5	814.5	404.9	383.8044448	189.282298	625.5326747	407.6148523	DC1638T5	0.471428571	0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.027	199	280	0	0	7qB1	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.129769503	sgMsh2	autochthonous
chr7	30590643	30590643	T	A	ENSMUST00000108151.2	5	ENSMUSG00000006310	missense	Q/H	315	Zbtb32	ENSMUST00000108151.2:c.945A>T	ENSMUSP00000103786.2:p.Gln315His	H-2-Kb	9	9	3	SGHGFTGTL	SGQGFTGTL	NetMHC	208.27	387.86	1.862	68	0.044	414.371	893.16	2.155	387.86	208.27	578.2	234.3	1208.119794	594.4427026	1303.917158	638.631006	DC1638T5	0.171428571	0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.064	68	1	0	0	7qB1	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.307601784	sgMsh2	autochthonous
chr7	120778466	120778466	T	C	ENSMUST00000033180.12	5	ENSMUSG00000030889	missense	L/P	448	Vwa3a	ENSMUST00000033180.12:c.1343T>C	ENSMUSP00000033180.6:p.Leu448Pro	H-2-Kb	9	10	2	VPFEYQKQL	VLFEYQKQL	NetMHC	232	78.09	0.337	151	0.046	467.685	126.588	0.271	78.09	232	36.4	570.8	237.1974414	495.5756965	175.0854271	439.7947088	DC1638T5	-1.3	-0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.053	151	1	0	0	7qF2	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.254732728	sgMsh2	autochthonous
chr6	34798277	34798277	A	G	ENSMUST00000115016.7	1	ENSMUSG00000038836	missense	T/A	173	Agbl3	ENSMUST00000115016.7:c.517A>G	ENSMUSP00000110668.1:p.Thr173Ala	H-2-Kb	9	10	2	NALVFEARF	NTLVFEARF	NetMHC	233.79	303.47	1.298	152	0.033	464.429	551.623	1.188	303.47	233.79	547.2	594.2	556.045077	403.747643	678.0317017	525.1096507	DC1638T5	1.057142857	1.057142857	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Vardict	2	0.043	152	10	0	0	6qB1	chr6-3494310-113068119	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.206669949	sgMsh2	autochthonous
chr7	35371230	35371230	T	A	ENSMUST00000032705.12	1	ENSMUSG00000030494	missense	L/Q	195	Rhpn2	ENSMUST00000032705.12:c.584T>A	ENSMUSP00000032705.6:p.Leu195Gln	H-2-Kb	9	10	2	LQFTWYDSF	LLFTWYDSF	SMMPMBEC	251.913	317.87	1.262	73	0.041	288.253	402.5	1.396	464.4	268.11	362.3	341.3	442.7004873	308.3968972	317.8703353	251.9126636	DC1638T5	-0.228571429	-0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.063	73	16	0	0	7qB2	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.302795506	sgMsh2	autochthonous
chr7	86412891	86412891	C	G	ENSMUST00000174362.2	3	ENSMUSG00000061549	missense	F/L	176	Olfr301	ENSMUST00000174362.2:c.528C>G	ENSMUSP00000133780.1:p.Phe176Leu	H-2-Kb	9	6	6	VVPQFLCDI	VVPQFFCDI	NetMHC	272.66	60.76	0.223	311	0.019	465.696	172.031	0.369	60.76	272.66	47.3	295.9	285.8314418	635.4918716	283.3022345	664.1252616	DC1638T5	0.714285714	1.771428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.021	311	0	0	NA	7qD3	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.100931835	sgMsh2	autochthonous
chr7	28378108	28378108	T	G	ENSMUST00000051241.6	1	ENSMUSG00000044786	missense	E/A	137	Zfp36	ENSMUST00000051241.6:c.410A>C	ENSMUSP00000057815.5:p.Glu137Ala	H-2-Kb	9	10	2	TALCHKFYL	TELCHKFYL	NetMHCpan	277.2	3533.7	12.748	150	0.053	305.267	2417.099	7.918	4434.67	332.18	3533.7	277.2	1300.498932	304.8667072	1222.503187	305.6680173	DC1638T5	0.642857143	0.642857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.066	150	123	12	0.097560976	7qA3	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.31721434	sgMsh2	autochthonous
chr7	16563481	16563481	T	A	ENSMUST00000075845.10	1	ENSMUSG00000058230	missense	H/L	553	Arhgap35	ENSMUST00000075845.10:c.1658A>T	ENSMUSP00000075242.4:p.His553Leu	H-2-Kb	9	3	9	LKHIHFVYL	LKHIHFVYH	SMMPMBEC	330.56	3367.053	10.186	200	0.05	491.973	12144.291	24.685	19134.99	847.05	23944.5	554.3	5153.591605	429.6452354	3367.053368	330.5597718	DC1638T5	1.085714286	1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.051	200	99	0	0	7qA2	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.245120172	sgMsh2	autochthonous
chr9	96686698	96686698	T	C	ENSMUST00000152594.7	2	ENSMUSG00000040433	missense	T/A	778	Zbtb38	ENSMUST00000152594.7:c.2332A>G	ENSMUSP00000121753.1:p.Thr778Ala	H-2-Db	9	11	1	AAPSNRGEI	TAPSNRGEI	NetMHC	12.02	23.48	1.953	371	0.016	65.833	113.193	1.719	23.48	12.02	136.5	74.3	116.8476547	63.18587442	109.5393098	68.48098525	DC1638T5	-1.4	-1.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.02	371	72	3	0.041666667	9qE3.3	chr9-3342997-124108155	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.096125558	sgMsh2	autochthonous
chr9	119609176	119609176	T	C	ENSMUST00000084787.5	5	ENSMUSG00000034533	missense	N/D	1876	Scn10a	ENSMUST00000084787.5:c.5626A>G	ENSMUSP00000081845.5:p.Asn1876Asp	H-2-Db	9	5	7	RSLMLSDPL	RSLMLSNPL	NetMHC	86.42	290.88	3.366	164	0.287	110.729	293.535	2.651	290.88	86.42	274.8	97.7	324.8029761	126.6543178	296.1897328	123.7570647	DC1638T5	1.057142857	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.301	164	0	0	NA	9qF3	chr9-3342997-124108155	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	2	1	sgMsh2	autochthonous
chr8	70519970	70519970	T	C	ENSMUST00000093456.11	1	ENSMUSG00000055553	missense	D/G	23	Kxd1	ENSMUST00000093456.11:c.68A>G	ENSMUSP00000091165.5:p.Asp23Gly	H-2-Db	9	4	8	LSMVNTDGV	LSMVNTDDV	NetMHCpan	48.8	26.6	0.545	122	0.066	194.423	62.837	0.323	27.81	148.62	26.6	48.8	97.86333238	240.2259945	98.53034422	247.4970347	DC1638T5	0.314285714	0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.078	122	88	3	0.034090909	8qB3.3	chr8-3436940-126969919	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.374889675	sgMsh2	autochthonous
chr8	105388515	105388515	G	T	ENSMUST00000063071.12	1	ENSMUSG00000051648	missense	H/Q	471	Kctd19	ENSMUST00000063071.12:c.1413C>A	ENSMUSP00000050687.6:p.His471Gln	H-2-Db	9	10	2	RQILNFLRL	RHILNFLRL	NetMHCpan	71.5	983.8	13.759	197	0.046	185.002	859.639	4.647	3032.3	183.1	983.8	71.5	667.7593842	186.9046042	735.4785311	214.076995	DC1638T5	1.528571429	1.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2	2	0.046	197	0	0	NA	8qD3	chr8-3436940-126969919	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.221088782	sgMsh2	autochthonous
chr8	105388515	105388515	G	T	ENSMUST00000063071.12	1	ENSMUSG00000051648	missense	H/Q	471	Kctd19	ENSMUST00000063071.12:c.1413C>A	ENSMUSP00000050687.6:p.His471Gln	H-2-Kb	8	11	1	QILNFLRL	HILNFLRL	NetMHC	18.06	47.51	2.631	197	0.046	41.763	65.439	1.567	47.51	18.06	65	40	70.91530907	43.52512229	65.87793843	64.37837347	DC1638T5	1.528571429	1.528571429	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2	2	0.046	197	0	0	NA	8qD3	chr8-3436940-126969919	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.221088782	sgMsh2	autochthonous
chr8	105388513	105388513	A	T	ENSMUST00000063071.12	1	ENSMUSG00000051648	missense	I/N	472	Kctd19	ENSMUST00000063071.12:c.1415T>A	ENSMUSP00000050687.6:p.Ile472Asn	H-2-Kb	8	10	2	HNLNFLRL	HILNFLRL	NetMHC	45.12	47.51	1.053	201	0.04	73.469	65.439	0.891	47.51	45.12	65	68.1	70.91530907	79.02054124	65.87793843	78.83879904	DC1638T5	0.385714286	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2	2	0.043	201	0	0	NA	8qD3	chr8-3436940-126969919	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.206669949	sgMsh2	autochthonous
chr8	94810481	94810481	T	G	ENSMUST00000034232.2	1	ENSMUSG00000031780	missense	F/V	4	Ccl17	ENSMUST00000034232.2:c.10T>G	ENSMUSP00000034232.1:p.Phe4Val	H-2-Kb	8	4	1	VTSAFGTM	FTSAFGTM	NetMHCpan	123.5	616.4	4.991	97	0.124	210.607	932.142	4.426	1810.59	173.62	616.4	123.5	901.0315536	247.5939338	963.2521787	272.1071791	DC1638T5	0.557142857	0.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.125	97	63	0	0	8qC5	chr8-3436940-126969919	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.600784735	sgMsh2	autochthonous
chr8	71663213	71663213	T	G	ENSMUST00000030170.14	5	ENSMUSG00000034799	missense	D/A	115	Unc13a	ENSMUST00000030170.14:c.344A>C	ENSMUSP00000030170.8:p.Asp115Ala	H-2-Kb	8	10	2	KAPTFHRI	KDPTFHRI	NetMHCpan	160.6	7570.5	47.139	30	0.1	376.444	4914.292	13.055	13971.05	280.02	7570.5	160.6	2258.083514	472.8680813	2146.545013	478.3436356	DC1638T5	-0.128571429	-0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.103	30	14	1	0.071428571	8qB3.3	chr8-3436940-126969919	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.495046622	sgMsh2	autochthonous
chr9	50621152	50621152	A	C	ENSMUST00000000171.14	1	ENSMUSG00000000167	missense	K/T	170	Pih1d2	ENSMUST00000000171.14:c.509A>C	ENSMUSP00000000171.8:p.Lys170Thr	H-2-Kb	8	10	2	ITTDFPDL	IKTDFPDL	SMM	176.092	965.473	5.483	212	0.085	265.45	3727.104	14.041	6866.6	315.75	6219	343.8	965.4727043	176.0921516	1235.207728	215.149331	DC1638T5	-0.485714286	-0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.1	212	31	9	0.290322581	9qA5.3	chr9-3342997-124108155	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.480627788	sgMsh2	autochthonous
chr9	39426718	39426718	T	A	ENSMUST00000073895.3	NA	ENSMUSG00000058856	missense	M/L	118	Olfr952	ENSMUST00000073895.3:c.352A>T	ENSMUSP00000073558.3:p.Met118Leu	H-2-Kb	9	11	1	LAYDRYVAI	MAYDRYVAI	NetMHCpan	22.6	14.4	0.637	375	0.027	36.184	30.259	0.836	27.08	38.93	14.4	22.6	39.27443988	44.06664633	33.43874735	33.43874735	DC1638T5	-0.014285714	-0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.026	375	0	0	NA	9qA5.1	chr9-3342997-124108155	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.124963225	sgMsh2	autochthonous
chr8	71663213	71663213	T	G	ENSMUST00000030170.14	5	ENSMUSG00000034799	missense	D/A	115	Unc13a	ENSMUST00000030170.14:c.344A>C	ENSMUSP00000030170.8:p.Asp115Ala	H-2-Kb	9	10	2	KAPTFHRIL	KDPTFHRIL	NetMHC	80.11	4480.1	55.924	30	0.1	401.786	3378.646	8.409	4480.1	80.11	3482	98.7	3119.67965	704.8715793	3275.291816	895.8803273	DC1638T5	0.157142857	0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.103	30	14	1	0.071428571	8qB3.3	chr8-3436940-126969919	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.495046622	sgMsh2	autochthonous
chr9	110087561	110087561	GA	G	ENSMUST00000062368.12	1	ENSMUSG00000032480	FS	S/X	629	Dhx30	ENSMUST00000062368.12:c.1885del	ENSMUSP00000062622.6:p.Ser629ProfsTer56	H-2-Kb	9	42	0	VNISTHTGI	NA	NetMHC	187.16	NA	NA	96	0.052	298.615	NA	NA	NA	187.16	NA	225.6	NA	371.6293451	NA	543.5631415	DC1638T5	0.457142857	0.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.055	96	68	1	0.014705882	9qF2	chr9-3342997-124108155	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.264345283	sgMsh2	autochthonous
chr8	105388513	105388513	A	T	ENSMUST00000063071.12	1	ENSMUSG00000051648	missense	I/N	472	Kctd19	ENSMUST00000063071.12:c.1415T>A	ENSMUSP00000050687.6:p.Ile472Asn	H-2-Kb	9	6	6	QMFRHNLNF	QMFRHILNF	NetMHCpan	153.4	71.6	0.467	201	0.04	195.79	118.652	0.606	122.46	227.52	71.6	153.4	114.8444468	170.6514568	162.6484766	220.9276129	DC1638T5	-0.757142857	-0.757142857	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2	2	0.043	201	0	0	NA	8qD3	chr8-3436940-126969919	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.206669949	sgMsh2	autochthonous
chr8	70509625	70509625	T	G	ENSMUST00000121623.7	5	ENSMUSG00000055553	missense	N/T	104	Kxd1	ENSMUST00000121623.7:c.311A>C	ENSMUSP00000113804.1:p.Asn104Thr	H-2-Kb	9	11	1	TMQIFVKTL	NMQIFVKTL	NetMHCpan	146.2	882.4	6.036	162	0.031	383.766	1728.553	4.504	1690.62	233.89	882.4	146.2	1766.485187	538.4061351	1969.019422	533.6419961	DC1638T5	1.028571429	1.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.034	162	585	3	0.005128205	8qB3.3	chr8-3436940-126969919	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.163413448	sgMsh2	autochthonous
chr8	71482355	71482355	A	G	ENSMUST00000093450.5	1	ENSMUSG00000034863	missense	V/A	401	Ano8	ENSMUST00000093450.5:c.1202T>C	ENSMUSP00000091157.4:p.Val401Ala	H-2-Kb	9	5	7	VRFLPKAML	VRFLPKVML	NetMHC	251.34	518.42	2.063	112	0.062	373.945	553.124	1.479	518.42	251.34	2129.6	1216.1	453.0123063	314.1304236	587.8276359	433.7604991	DC1638T5	1.228571429	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.075	112	47	0	0	8qB3.3	chr8-3436940-126969919	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.360470841	sgMsh2	autochthonous
chr9	22108013	22108013	C	T	ENSMUST00000001384.5	1	ENSMUSG00000001349	missense	R/W	226	Cnn1	ENSMUST00000001384.5:c.676C>T	ENSMUSP00000001384.4:p.Arg226Trp	H-2-Kb	9	10	2	KWQIFEPGL	KRQIFEPGL	NetMHC	274.01	2704.43	9.87	110	0.055	448.824	2635.195	5.871	2704.43	274.01	6936.3	1120.2	1879.792879	309.8203926	2565.960697	587.8276359	DC1638T5	0.3	0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.067	110	3	0	0	9qA3	chr9-3342997-124108155	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.322020618	sgMsh2	autochthonous
chr8	105388515	105388515	G	T	ENSMUST00000063071.12	1	ENSMUSG00000051648	missense	H/Q	471	Kctd19	ENSMUST00000063071.12:c.1413C>A	ENSMUSP00000050687.6:p.His471Gln	H-2-Kb	9	7	5	QMFRQILNF	QMFRHILNF	NetMHC	327.13	122.46	0.374	197	0.046	333.525	118.652	0.356	122.46	327.13	71.6	332	114.8444468	335.0502914	162.6484766	536.1051757	DC1638T5	0.342857143	0.342857143	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2	2	0.046	197	0	0	NA	8qD3	chr8-3436940-126969919	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.221088782	sgMsh2	autochthonous
chr9	110087561	110087561	GA	G	ENSMUST00000062368.12	1	ENSMUSG00000032480	FS	S/X	629	Dhx30	ENSMUST00000062368.12:c.1885del	ENSMUSP00000062622.6:p.Ser629ProfsTer56	H-2-Kb	9	36	0	TSWPSWVNI	NA	NetMHCpan	327.4	NA	NA	96	0.052	466.648	NA	NA	NA	333.16	NA	327.4	NA	883.3035991	NA	600.1364431	DC1638T5	0.142857143	0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.055	96	68	1	0.014705882	9qF2	chr9-3342997-124108155	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.264345283	sgMsh2	autochthonous
chr8	70518384	70518384	T	C	ENSMUST00000093456.11	1	ENSMUSG00000055553	missense	S/G	79	Kxd1	ENSMUST00000093456.11:c.235A>G	ENSMUSP00000091165.5:p.Ser79Gly	H-2-Kb	9	11	1	GIFRRIRTL	SIFRRIRTL	NetMHCpan	365	30	0.082	27	0.111	425.117	97.52	0.229	32.07	406.37	30	365	162.970876	461.4344339	178.7516256	443.8640791	DC1638T5	-0.442857143	-0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.148	27	109	34	0.311926606	8qB3.3	chr8-3436940-126969919	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.711329126	sgMsh2	autochthonous
chr6	34872821	34872821	C	A	ENSMUST00000074949.3	1	ENSMUSG00000057137	missense	L/M	91	Tmem140	ENSMUST00000074949.3:c.271C>A	ENSMUSP00000074482.3:p.Leu91Met	H-2-Db	9	9	3	GAMVLTVFV	GALVLTVFV	SMM	454.59	411.737	0.906	83	0.145	457.813	471.133	1.029	525.81	458.99	3589.1	1910.7	411.7370988	454.5901278	416.4568405	456.6358453	DC1638T6	2.914285714	2.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.169	83	39	7	0.179487179	6qB1	chr6-3494310-149014300	6	3	3	0.745	4.751267339	RARE KARYOTYPE	1	1	sgMsh2	autochthonous
chr1	13701084	13701084	AT	A	ENSMUST00000088542.3	1	ENSMUSG00000067813	FS	F/X	275	Xkr9	ENSMUST00000088542.3:c.828del	ENSMUSP00000085900.3:p.Phe276LeufsTer18	H-2-Kb	8	5	8	FILVFTFL	FILVFTFF	SMM	23.428	380.838	16.255	170	0.035	25.499	506.514	19.864	632.19	25.25	1893.5	159.3	380.8377582	23.42825811	323.3999884	25.74779247	DC1638T6	3.028571429	3.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.041	170	6	1	0.166666667	1qA3	chr1-4867294-195062457	5	3	2	0.745	4.751267339	RARE KARYOTYPE	1	0.261479142	sgMsh2	autochthonous
chr2	88987454	88987454	G	GA	ENSMUST00000216026.1	5	ENSMUSG00000075110	FS	F/FX	249	Olfr1214	ENSMUST00000216026.1:c.746dup	ENSMUSP00000149049.1:p.Phe250LeufsTer18	H-2-Kb	8	8	5	VVFFLCFL	VVFFFVSC	SMM	27.086	47.287	1.746	171	0.105	34.429	101.535	2.949	272.32	85.58	150.5	37.4	47.28680813	27.08569601	52.57024488	31.45864409	DC1638T6	3.242857143	3.3	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.106	171	0	0	NA	2qE1	chr2-4925576-181511691	5	3	2	0.745	4.751267339	RARE KARYOTYPE	1	0.676019246	sgMsh2	autochthonous
chr3	34064983	34064983	GA	G	ENSMUST00000001620.12	5	ENSMUSG00000027680	FS	E/X	567	Fxr1	ENSMUST00000001620.12:c.1707del	ENSMUSP00000001620.8:p.Lys569AsnfsTer57	H-2-Kb	8	39	0	IIFLELSL	NA	SMMPMBEC	55.429	NA	NA	70	0.071	69.735	NA	NA	NA	110.64	NA	66.4	NA	73.07015019	NA	55.42937734	DC1638T6	2.057142857	2.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0714	70	11	0	0	3qA3	chr3-15331914-159911278	6	3	3	0.745	4.751267339	RARE KARYOTYPE	1	0.45535636	sgMsh2	autochthonous
chr6	42141182	42141182	G	A	ENSMUST00000057686.4	NA	ENSMUSG00000047102	missense	V/I	83	Tas2r139	ENSMUST00000057686.4:c.247G>A	ENSMUSP00000062919.4:p.Val83Ile	H-2-Kb	8	11	1	IAFYNSVL	VAFYNSVL	NetMHCpan	63.9	63.7	0.997	342	0.406	144.327	141.336	0.979	149.71	168.84	63.7	63.9	142.4754378	151.9637493	140.197413	136.691025	DC1638T6	1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.42	342	0	0	NA	6qB2.1	chr6-3494310-149014300	6	3	3	0.745	4.751267339	RARE KARYOTYPE	3	1	sgMsh2	autochthonous
chr7	102477199	102477199	T	C	ENSMUST00000219647.1	5	ENSMUSG00000044814	missense	T/A	224	Olfr543	ENSMUST00000219647.1:c.670A>G	ENSMUSP00000151487.1:p.Thr224Ala	H-2-Kb	8	6	6	LGTSYARI	LGTSYTRI	NetMHC	269.35	1405.21	5.217	235	0.081	351.731	1127.751	3.206	1405.21	269.35	971.7	365.6	1269.813676	444.3651588	985.6892043	337.8625068	DC1638T6	-0.2	-0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.085	235	0	0	NA	7qE3	chr7-4704058-142893198	6	3	3	0.745	4.751267339	RARE KARYOTYPE	1	0.542090904	sgMsh2	autochthonous
chr2	88987454	88987454	G	GA	ENSMUST00000216026.1	5	ENSMUSG00000075110	FS	F/FX	249	Olfr1214	ENSMUST00000216026.1:c.746dup	ENSMUSP00000149049.1:p.Phe250LeufsTer18	H-2-Kb	8	12	1	LCFLYINI	NA	SMMPMBEC	123.237	NA	NA	171	0.105	236.318	NA	NA	NA	318.66	NA	261.9	NA	210.7366151	NA	123.2366829	DC1638T6	1.9	1.9	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.106	171	0	0	NA	2qE1	chr2-4925576-181511691	5	3	2	0.745	4.751267339	RARE KARYOTYPE	1	0.676019246	sgMsh2	autochthonous
chr2	88987454	88987454	G	GA	ENSMUST00000216026.1	5	ENSMUSG00000075110	FS	F/FX	249	Olfr1214	ENSMUST00000216026.1:c.746dup	ENSMUSP00000149049.1:p.Phe250LeufsTer18	H-2-Kb	8	17	0	INICTAHI	NA	NetMHCpan	274.5	NA	NA	171	0.105	479.418	NA	NA	NA	415.91	NA	274.5	NA	660.2980276	NA	542.9252	DC1638T6	0.842857143	0.842857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.106	171	0	0	NA	2qE1	chr2-4925576-181511691	5	3	2	0.745	4.751267339	RARE KARYOTYPE	1	0.676019246	sgMsh2	autochthonous
chr3	34064983	34064983	GA	G	ENSMUST00000001620.12	5	ENSMUSG00000027680	FS	E/X	567	Fxr1	ENSMUST00000001620.12:c.1707del	ENSMUSP00000001620.8:p.Lys569AsnfsTer57	H-2-Kb	8	37	0	LQIIFLEL	NA	NetMHCpan	188.3	NA	NA	70	0.071	359.482	NA	NA	NA	428.77	NA	188.3	NA	375.6124682	NA	343.3523309	DC1638T6	1.771428571	1.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0714	70	11	0	0	3qA3	chr3-15331914-159911278	6	3	3	0.745	4.751267339	RARE KARYOTYPE	1	0.45535636	sgMsh2	autochthonous
chr17	75348895	75348895	TC	T	ENSMUST00000135447.7	1	ENSMUSG00000001870	FS	L/X	968	Ltbp1	ENSMUST00000135447.7:c.2914del	ENSMUSP00000116890.1:p.His972ThrfsTer?	H-2-Kb	8	15	1	TSSCFICL	NA	SMMPMBEC	292.914	NA	NA	35	0.2	478.044	NA	NA	NA	725.74	NA	659.1	NA	296.9887511	NA	292.9139126	DC1638T6	2.071428571	2.071428571	FALSE	FALSE	FALSE	2	FALSE	0	Strelka2;Vardict	2	0.2	35	0	0	NA	17qE2	chr17-3077483-90701011	5	3	2	0.745	4.751267339	RARE KARYOTYPE	1	1	sgMsh2	autochthonous
chr2	88987454	88987454	G	GA	ENSMUST00000216026.1	5	ENSMUSG00000075110	FS	F/FX	249	Olfr1214	ENSMUST00000216026.1:c.746dup	ENSMUSP00000149049.1:p.Phe250LeufsTer18	H-2-Kb	8	5	8	ITVVVFFL	ITVVVFFF	SMMPMBEC	164.339	2064.144	12.56	171	0.105	375.439	3337.162	8.889	5053.22	747.8	3984.4	585.4	2689.923939	165.4778997	2064.14404	164.3387578	DC1638T6	3.042857143	3.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.106	171	0	0	NA	2qE1	chr2-4925576-181511691	5	3	2	0.745	4.751267339	RARE KARYOTYPE	1	0.676019246	sgMsh2	autochthonous
chr6	42141182	42141182	G	A	ENSMUST00000057686.4	NA	ENSMUSG00000047102	missense	V/I	83	Tas2r139	ENSMUST00000057686.4:c.247G>A	ENSMUSP00000062919.4:p.Val83Ile	H-2-Kb	9	9	3	FNIAFYNSV	FNVAFYNSV	NetMHC	24	37.87	1.578	342	0.406	70.34	107.857	1.533	37.87	24	59	33.5	156.7147954	107.1790739	188.9078477	130.0918231	DC1638T6	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.42	342	0	0	NA	6qB2.1	chr6-3494310-149014300	6	3	3	0.745	4.751267339	RARE KARYOTYPE	3	1	sgMsh2	autochthonous
chr12	75400202	75400202	G	GA	ENSMUST00000055390.5	1	ENSMUSG00000046768	FS	-/X	198-199	Rhoj	ENSMUST00000055390.5:c.602dup	ENSMUSP00000059498.5:p.Lys202GlufsTer38	H-2-Kb	9	20	0	VSRLLCNYL	NA	NetMHC	91.28	NA	NA	78	0.205	186.378	NA	NA	NA	91.28	NA	195.7	NA	177.0557356	NA	221.9473684	DC1638T6	0.657142857	0.785714286	FALSE	FALSE	FALSE	1	FALSE	0	Strelka2;Vardict	2	0.2051	78	11	0	0	12qC3	chr12-3252726-119465464	5	3	2	0.745	4.751267339	RARE KARYOTYPE	1	1	sgMsh2	autochthonous
chr2	88987454	88987454	G	GA	ENSMUST00000216026.1	5	ENSMUSG00000075110	FS	F/FX	249	Olfr1214	ENSMUST00000216026.1:c.746dup	ENSMUSP00000149049.1:p.Phe250LeufsTer18	H-2-Kb	9	7	6	VVVFFLCFL	VVVFFFVSC	SMM	110.182	335.823	3.048	171	0.105	127.816	498.126	3.897	660.43	122.51	1192.6	217.2	335.8226621	110.1818348	229.2186762	133.122051	DC1638T6	3.242857143	3.5	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.106	171	0	0	NA	2qE1	chr2-4925576-181511691	5	3	2	0.745	4.751267339	RARE KARYOTYPE	1	0.676019246	sgMsh2	autochthonous
chr2	85753674	85753674	AC	A	ENSMUST00000216831.2	3	ENSMUSG00000110879	FS	Y/X	104	Olfr1010	ENSMUST00000216831.2:c.319del	ENSMUSP00000151209.1:p.Leu107CysfsTer6	H-2-Kb	9	6	9	AQFFFYPPC	AQFFFYPPL	NetMHCpan	80.9	5.9	0.073	240	0.146	154.521	13.783	0.089	7.19	157.25	5.9	80.9	20.37558094	206.5903351	21.39193154	151.7923903	DC1638T6	0.914285714	0.914285714	FALSE	TRUE	FALSE	1	FALSE	0	Strelka2;Vardict	2	0.1458	240	0	0	NA	2qD	chr2-4925576-181511691	5	3	2	0.745	4.751267339	RARE KARYOTYPE	1	0.92984534	sgMsh2	autochthonous
chr2	88987454	88987454	G	GA	ENSMUST00000216026.1	5	ENSMUSG00000075110	FS	F/FX	249	Olfr1214	ENSMUST00000216026.1:c.746dup	ENSMUSP00000149049.1:p.Phe250LeufsTer18	H-2-Kb	9	9	4	VFFLCFLYI	NA	SMM	85.135	NA	NA	171	0.105	145.565	NA	NA	NA	198.82	NA	1250.9	NA	85.13536455	NA	92.31026548	DC1638T6	2.7	3.242857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.106	171	0	0	NA	2qE1	chr2-4925576-181511691	5	3	2	0.745	4.751267339	RARE KARYOTYPE	1	0.676019246	sgMsh2	autochthonous
chr6	34872821	34872821	C	A	ENSMUST00000074949.3	1	ENSMUSG00000057137	missense	L/M	91	Tmem140	ENSMUST00000074949.3:c.271C>A	ENSMUSP00000074482.3:p.Leu91Met	H-2-Kb	9	11	1	MVLTVFVPL	LVLTVFVPL	NetMHCpan	130.4	217.4	1.667	83	0.145	256.795	338.963	1.32	406.84	223.02	217.4	130.4	387.3557436	345.2311699	290.5694826	290.5694826	DC1638T6	2.357142857	2.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.169	83	39	7	0.179487179	6qB1	chr6-3494310-149014300	6	3	3	0.745	4.751267339	RARE KARYOTYPE	1	1	sgMsh2	autochthonous
chr7	102477199	102477199	T	C	ENSMUST00000219647.1	5	ENSMUSG00000044814	missense	T/A	224	Olfr543	ENSMUST00000219647.1:c.670A>G	ENSMUSP00000151487.1:p.Thr224Ala	H-2-Kb	9	8	4	TSYARIIYA	TSYTRIIYA	NetMHCpan	250.3	227	0.907	235	0.081	454.251	388.882	0.856	451.74	605.07	227	250.3	464.6329446	520.1277201	326.0243217	388.3738676	DC1638T6	0.785714286	0.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.085	235	0	0	NA	7qE3	chr7-4704058-142893198	6	3	3	0.745	4.751267339	RARE KARYOTYPE	1	0.542090904	sgMsh2	autochthonous
chr2	88987454	88987454	G	GA	ENSMUST00000216026.1	5	ENSMUSG00000075110	FS	F/FX	249	Olfr1214	ENSMUST00000216026.1:c.746dup	ENSMUSP00000149049.1:p.Phe250LeufsTer18	H-2-Kb	9	6	7	TVVVFFLCF	TVVVFFFVS	SMM	197.747	370.775	1.875	171	0.105	420.432	2414.543	5.743	4228.95	642.14	7525.8	2339.5	370.7746213	197.7470439	600.1364431	198.7238535	DC1638T6	3.3	3.5	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.106	171	0	0	NA	2qE1	chr2-4925576-181511691	5	3	2	0.745	4.751267339	RARE KARYOTYPE	1	0.676019246	sgMsh2	autochthonous
chr8	48276309	48276309	G	A	ENSMUST00000033965.13	1	ENSMUSG00000031561	missense	T/M	1554	Tenm3	ENSMUST00000033965.13:c.4661C>T	ENSMUSP00000033965.6:p.Thr1554Met	H-2-Db	9	7	5	VSLVMGDYL	VSLVTGDYL	NetMHC	29.95	98.42	3.286	172	0.081	65.873	266.365	4.044	98.42	29.95	146.7	53.3	386.0290606	79.18082091	412.6387413	78.44585485	DC1638T7	1.214285714	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.092	172	0	0	NA	8qB1.1	chr8-3511896-126969919	4	2	2	0.776	3.172152134	NA	1	0.376079892	sgMsh2	autochthonous
chr3	72938683	72938683	C	T	ENSMUST00000167334.7	1	ENSMUSG00000027790	missense	R/H	682	Sis	ENSMUST00000167334.7:c.2045G>A	ENSMUSP00000129116.1:p.Arg682His	H-2-Kb	8	8	4	LTIHYTLL	LTIRYTLL	NetMHCpan	23	13.3	0.578	160	0.281	57.416	28.065	0.489	11.25	38.67	13.3	23	51.61072977	96.32521787	42.82920371	76.16229111	DC1638T7	0.885714286	0.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.281	160	0	0	NA	3qE3	chr3-11824041-159911278	3	2	1	0.776	3.172152134	NA	1	1	sgMsh2	autochthonous
chr9	38143329	38143329	T	C	ENSMUST00000079804.1	NA	ENSMUSG00000096409	missense	Y/H	65	Olfr890	ENSMUST00000079804.1:c.193T>C	ENSMUSP00000078733.1:p.Tyr65His	H-2-Kb	8	10	2	MHYFLFNL	MYYFLFNL	SMM	31.531	50.786	1.611	422	0.017	37.667	58.082	1.542	83.97	49.64	54.4	32.8	50.78553127	31.53116375	61.76465217	42.53436955	DC1638T7	0.742857143	0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.021	422	0	0	NA	9qA5.1	chr9-5306814-124108155	2	1	1	0.776	3.172152134	NA	1	0.085844323	sgMsh2	autochthonous
chr2	69489176	69489176	T	A	ENSMUST00000080953.11	5	ENSMUSG00000027070	missense	N/I	2001	Lrp2	ENSMUST00000080953.11:c.6002A>T	ENSMUSP00000079752.5:p.Asn2001Ile	H-2-Kb	8	11	1	IIPYLRGL	NIPYLRGL	NetMHC	80.25	3805.26	47.418	137	0.051	226.393	3281.785	14.496	3805.26	80.25	1857.8	195.9	3074.255792	256.8857419	3489.313575	292.9139126	DC1638T7	0.614285714	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.058	137	9	1	0.111111111	2qC2	chr2-4925576-181511691	3	2	1	0.776	3.172152134	NA	1	0.237093845	sgMsh2	autochthonous
chr11	106017448	106017448	T	C	ENSMUST00000001965.13	1	ENSMUSG00000001901	missense	C/R	297	Kcnh6	ENSMUST00000001965.13:c.889T>C	ENSMUSP00000001965.7:p.Cys297Arg	H-2-Kb	8	7	5	CGYTRSPL	CGYTCSPL	NetMHCpan	58.6	60.3	1.029	96	0.333	125.641	67.622	0.538	51.11	82.34	60.3	58.6	74.94454029	168.9429215	83.12659663	193.0812048	DC1638T7	-0.785714286	-0.785714286	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.314	96	0	0	NA	11qE1	chr11-69590981-121956809	2	1	1	0.776	3.172152134	NA	1	1	sgMsh2	autochthonous
chr2	86677262	86677262	G	T	ENSMUST00000213198.1	5	ENSMUSG00000075175	missense	L/I	24	Olfr1086	ENSMUST00000213198.1:c.70C>A	ENSMUSP00000150094.1:p.Leu24Ile	H-2-Kb	8	10	2	IISFFLFL	ILSFFLFL	SMM	55.814	230.537	4.13	174	0.086	68.479	230.272	3.363	578.44	121.75	189.5	69.7	230.5366617	55.81359543	230.0064421	67.25738845	DC1638T7	2.814285714	2.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.082	174	0	0	NA	2qD	chr2-4925576-181511691	3	2	1	0.776	3.172152134	NA	1	0.335201643	sgMsh2	autochthonous
chr12	98275909	98275909	G	A	ENSMUST00000075072.5	1	ENSMUSG00000021886	missense	V/I	274	Gpr65	ENSMUST00000075072.5:c.820G>A	ENSMUSP00000074581.4:p.Val274Ile	H-2-Kb	8	11	1	ITVALTSL	VTVALTSL	NetMHCpan	142.3	135.5	0.952	275	0.065	185.575	174.756	0.942	165.12	183.33	135.5	142.3	184.391119	196.6708524	192.6371303	187.8192059	DC1638T7	1.628571429	1.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.066	275	7	0	0	12qE	chr12-3237715-119465464	4	2	2	0.776	3.172152134	NA	1	0.269796444	sgMsh2	autochthonous
chr17	63896173	63896173	G	A	ENSMUST00000000129.13	1	ENSMUSG00000000127	missense	A/T	33	Fer	ENSMUST00000000129.13:c.97G>A	ENSMUSP00000000129.6:p.Ala33Thr	H-2-Kb	8	5	7	TVKKFMTL	TVKKFMAL	NetMHCpan	78.6	86.3	1.098	205	0.034	211.172	123.227	0.584	101.33	193.92	86.3	78.6	153.0171117	254.5305993	145.1242539	228.4230889	DC1638T7	0.6	0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.038	205	2	0	0	17qE1.1	chr17-3077483-90208269	3	2	1	0.776	3.172152134	NA	1	0.155337347	sgMsh2	autochthonous
chr19	32052883	32052883	C	T	ENSMUST00000237104.1	NA	ENSMUSG00000024887	missense	A/T	130	Asah2	ENSMUST00000237104.1:c.388G>A	ENSMUSP00000157424.1:p.Ala130Thr	H-2-Kb	8	10	2	MTFVSVEL	MAFVSVEL	NetMHCpan	119.1	129.9	1.091	122	0.057	167.958	233.952	1.393	220.31	216.13	129.9	119.1	247.5939338	160.228586	277.8049629	175.6871509	DC1638T7	1.428571429	1.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.071	122	9	1	0.111111111	19qC1	chr19-4320845-60850867	3	2	1	0.776	3.172152134	NA	1	0.290235569	sgMsh2	autochthonous
chr15	79762373	79762373	C	CCA	ENSMUST00000023055.7	1	ENSMUSG00000022420	FS	W/CX	102	Dnal4	ENSMUST00000023055.7:c.304_305dup	ENSMUSP00000023055.6:p.Trp102CysfsTer49	H-2-Kb	8	47	0	SSLFFCPC	NA	SMM	76.69	NA	NA	34	0.088	137.432	NA	NA	NA	229.79	NA	173.3	NA	76.69022289	NA	101.5640475	DC1638T7	1.714285714	1.714285714	FALSE	TRUE	FALSE	2	FALSE	0	Strelka2;Vardict	2	0.0882	34	61	0	0	15qE1	chr15-3341105-102298133	4	3	1	0.776	3.172152134	NA	1	0.360546157	sgMsh2	autochthonous
chr7	103740610	103740610	T	A	ENSMUST00000213906.1	5	ENSMUSG00000047545	missense	D/V	210	Olfr629	ENSMUST00000213906.1:c.629A>T	ENSMUSP00000150688.1:p.Asp210Val	H-2-Kb	8	7	5	VTIFVLGL	VTIFDLGL	NetMHCpan	71.3	321.1	4.504	189	0.122	167.194	414.71	2.48	883.41	271.89	321.1	71.3	412.800296	151.2655393	416.6198901	183.1217795	DC1638T7	2.571428571	2.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.128	189	0	0	NA	7qE3	chr7-3894475-143497059	3	2	1	0.776	3.172152134	NA	1	0.523241589	sgMsh2	autochthonous
chr5	130617956	130617956	G	A	ENSMUST00000086029.9	1	ENSMUSG00000060371	missense	A/T	120	Caln1	ENSMUST00000086029.9:c.358G>A	ENSMUSP00000083193.3:p.Ala120Thr	H-2-Kb	8	10	2	LTIIMQRL	LAIIMQRL	NetMHCpan	241	258.2	1.071	97	0.103	343.29	444.206	1.294	332.84	335.23	258.2	241	583.0959165	377.3462166	555.5715525	351.3500341	DC1638T7	0.857142857	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.125	97	0	0	NA	5qG1.3	chr5-3344487-150478141	3	2	1	0.776	3.172152134	NA	1	0.510978114	sgMsh2	autochthonous
chr3	72938683	72938683	C	T	ENSMUST00000167334.7	1	ENSMUSG00000027790	missense	R/H	682	Sis	ENSMUST00000167334.7:c.2045G>A	ENSMUSP00000129116.1:p.Arg682His	H-2-Kb	8	10	2	IHYTLLPF	IRYTLLPF	NetMHCpan	147.2	761.8	5.175	160	0.281	388.48	1127.677	2.903	1211.26	347.68	761.8	147.2	1329.65815	500.8872766	1044.094962	429.2793522	DC1638T7	0.514285714	0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.281	160	0	0	NA	3qE3	chr3-11824041-159911278	3	2	1	0.776	3.172152134	NA	1	1	sgMsh2	autochthonous
chr7	103740610	103740610	T	A	ENSMUST00000213906.1	5	ENSMUSG00000047545	missense	D/V	210	Olfr629	ENSMUST00000213906.1:c.629A>T	ENSMUSP00000150688.1:p.Asp210Val	H-2-Kb	8	8	4	TIFVLGLI	TIFDLGLI	NetMHCpan	341.2	678.1	1.987	189	0.122	408.327	938.678	2.299	983.38	419.7	678.1	341.2	972.1650414	488.3599043	905.1905263	396.9538331	DC1638T7	3.314285714	3.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.128	189	0	0	NA	7qE3	chr7-3894475-143497059	3	2	1	0.776	3.172152134	NA	1	0.523241589	sgMsh2	autochthonous
chr4	45900454	45900454	G	T	ENSMUST00000178561.7	5	ENSMUSG00000035539	missense	D/Y	273	Ccdc180	ENSMUST00000178561.7:c.817G>T	ENSMUSP00000136714.1:p.Asp273Tyr	H-2-Kb	8	9	3	QPYVYRLI	QPDVYRLI	SMM	362.861	11769.012	32.434	136	0.132	456.145	16477.615	36.124	23047.92	445.91	19032	1470.5	11769.01185	362.8607551	13923.23008	466.380088	DC1638T7	0.542857143	0.542857143	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.145	136	0	0	NA	4qB1	chr4-3973093-156200568	3	2	1	0.776	3.172152134	NA	1	0.592734613	sgMsh2	autochthonous
chr2	86228686	86228686	T	G	ENSMUST00000216056.1	5	ENSMUSG00000075196	missense	K/T	95	Olfr1047	ENSMUST00000216056.1:c.284A>C	ENSMUSP00000150247.1:p.Lys95Thr	H-2-Kb	8	8	4	ISFTLCAT	ISFKLCAT	SMMPMBEC	193.526	251.617	1.3	162	0.093	326.567	376.78	1.154	587.09	517.31	396.5	380.4	357.0590129	272.7344509	251.6170116	193.5263029	DC1638T7	1.242857143	1.985714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.104	162	0	0	NA	2qD	chr2-4925576-181511691	3	2	1	0.776	3.172152134	NA	1	0.425133791	sgMsh2	autochthonous
chr2	86677262	86677262	G	T	ENSMUST00000213198.1	5	ENSMUSG00000075175	missense	L/I	24	Olfr1086	ENSMUST00000213198.1:c.70C>A	ENSMUSP00000150094.1:p.Leu24Ile	H-2-Kb	8	11	1	ISFFLFLA	LSFFLFLA	NetMHCpan	203.4	888.7	4.369	174	0.086	246.996	1117.296	4.524	2706.42	644.65	888.7	203.4	1266.893185	267.1406633	967.6983488	226.8506354	DC1638T7	2.428571429	2.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.082	174	0	0	NA	2qD	chr2-4925576-181511691	3	2	1	0.776	3.172152134	NA	1	0.335201643	sgMsh2	autochthonous
chr17	75348895	75348895	TC	T	ENSMUST00000135447.7	1	ENSMUSG00000001870	FS	L/X	968	Ltbp1	ENSMUST00000135447.7:c.2914del	ENSMUSP00000116890.1:p.His972ThrfsTer?	H-2-Kb	8	15	1	TSSCFICL	NA	SMMPMBEC	292.914	NA	NA	32	0.219	478.044	NA	NA	NA	725.74	NA	659.1	NA	296.9887511	NA	292.9139126	DC1638T7	2.071428571	2.071428571	FALSE	FALSE	FALSE	2	FALSE	0	Strelka2;Vardict	2	0.2188	32	0	0	NA	17qE2	chr17-3077483-90208269	3	2	1	0.776	3.172152134	NA	1	0.894416091	sgMsh2	autochthonous
chr2	86677262	86677262	G	T	ENSMUST00000213198.1	5	ENSMUSG00000075175	missense	L/I	24	Olfr1086	ENSMUST00000213198.1:c.70C>A	ENSMUSP00000150094.1:p.Leu24Ile	H-2-Kb	9	11	1	ISFFLFLAI	LSFFLFLAI	NetMHCpan	21.6	86	3.981	174	0.086	66.772	138.373	2.072	207.51	70.12	86	21.6	152.7953016	78.18258038	123.95099	63.4234701	DC1638T7	3.185714286	3.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.082	174	0	0	NA	2qD	chr2-4925576-181511691	3	2	1	0.776	3.172152134	NA	1	0.335201643	sgMsh2	autochthonous
chr4	45900454	45900454	G	T	ENSMUST00000178561.7	5	ENSMUSG00000035539	missense	D/Y	273	Ccdc180	ENSMUST00000178561.7:c.817G>T	ENSMUSP00000136714.1:p.Asp273Tyr	H-2-Kb	9	4	8	TSYILQPYV	TSYILQPDV	NetMHC	77	391.9	5.09	136	0.132	162.574	456.014	2.805	391.9	77	587.8	103.2	520.1277201	230.7331526	391.0659467	221.9473684	DC1638T7	0.685714286	0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.145	136	0	0	NA	4qB1	chr4-3973093-156200568	3	2	1	0.776	3.172152134	NA	1	0.592734613	sgMsh2	autochthonous
chr3	72938683	72938683	C	T	ENSMUST00000167334.7	1	ENSMUSG00000027790	missense	R/H	682	Sis	ENSMUST00000167334.7:c.2045G>A	ENSMUSP00000129116.1:p.Arg682His	H-2-Kb	9	10	2	IHYTLLPFL	IRYTLLPFL	NetMHCpan	67.3	318.2	4.728	160	0.281	134.13	309.144	2.305	375.83	101.44	318.2	67.3	295.1956816	175.4324789	300.0889473	166.8207233	DC1638T7	1.514285714	1.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.281	160	0	0	NA	3qE3	chr3-11824041-159911278	3	2	1	0.776	3.172152134	NA	1	1	sgMsh2	autochthonous
chr15	8203788	8203788	C	T	ENSMUST00000110617.1	5	ENSMUSG00000039801	missense	A/V	1199	Cplane1	ENSMUST00000110617.1:c.3596C>T	ENSMUSP00000106247.1:p.Ala1199Val	H-2-Kb	9	10	2	VVQWYILQL	VAQWYILQL	NetMHCpan	65.3	48.9	0.749	185	0.065	153.343	127.526	0.832	85.91	111.14	48.9	65.3	220.3484501	247.8049629	169.1414308	195.5464788	DC1638T7	0.414285714	1.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.066	185	8	1	0.125	15qA1	chr15-3341105-102298133	4	3	1	0.776	3.172152134	NA	1	0.269796444	sgMsh2	autochthonous
chr1	191163954	191163954	AG	A	ENSMUST00000171798.1	NA	ENSMUSG00000091017	FS	P/X	164	Fam71a	ENSMUST00000171798.1:c.491del	ENSMUSP00000127945.1:p.Pro164LeufsTer15	H-2-Kb	9	3	9	SCYLQLCPL	SCYLQLCPP	NetMHCpan	128.5	10518.4	81.855	131	0.076	162.191	5914.168	36.464	11787.27	146.51	10518.4	128.5	820.5593529	177.8729877	1309.935766	177.9303365	DC1638T7	1.071428571	1.071428571	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;Vardict	3	0.092	131	0	0	NA	1qH6	chr1-6770919-195062457	4	2	2	0.776	3.172152134	NA	1	0.376079892	sgMsh2	autochthonous
chr7	103740610	103740610	T	A	ENSMUST00000213906.1	5	ENSMUSG00000047545	missense	D/V	210	Olfr629	ENSMUST00000213906.1:c.629A>T	ENSMUSP00000150688.1:p.Asp210Val	H-2-Kb	9	6	6	SVTIFVLGL	SVTIFDLGL	NetMHC	150.17	352.56	2.348	189	0.122	310.766	492.716	1.585	352.56	150.17	494.4	156.9	491.0322312	464.6329446	601.5199005	552.3953321	DC1638T7	2.571428571	2.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.128	189	0	0	NA	7qE3	chr7-3894475-143497059	3	2	1	0.776	3.172152134	NA	1	0.523241589	sgMsh2	autochthonous
chr15	79762373	79762373	C	CCA	ENSMUST00000023055.7	1	ENSMUSG00000022420	FS	W/CX	102	Dnal4	ENSMUST00000023055.7:c.304_305dup	ENSMUSP00000023055.6:p.Trp102CysfsTer49	H-2-Kb	9	47	0	SSLFFCPCV	NA	NetMHC	150.96	NA	NA	34	0.088	224.554	NA	NA	NA	150.96	NA	179.8	NA	293.8393807	NA	269.3084622	DC1638T7	2.428571429	2.428571429	FALSE	FALSE	FALSE	2	FALSE	0	Strelka2;Vardict	2	0.0882	34	61	0	0	15qE1	chr15-3341105-102298133	4	3	1	0.776	3.172152134	NA	1	0.360546157	sgMsh2	autochthonous
chr8	48276309	48276309	G	A	ENSMUST00000033965.13	1	ENSMUSG00000031561	missense	T/M	1554	Tenm3	ENSMUST00000033965.13:c.4661C>T	ENSMUSP00000033965.6:p.Thr1554Met	H-2-Kb	9	10	2	VMGDYLYNF	VTGDYLYNF	SMM	110.69	293.839	2.655	172	0.081	147.887	308.437	2.086	276.37	153.46	759.5	531.1	293.8393807	110.690411	323.0353127	142.3147781	DC1638T7	-0.485714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.092	172	0	0	NA	8qB1.1	chr8-3511896-126969919	4	2	2	0.776	3.172152134	NA	1	0.376079892	sgMsh2	autochthonous
chr19	32052883	32052883	C	T	ENSMUST00000237104.1	NA	ENSMUSG00000024887	missense	A/T	130	Asah2	ENSMUST00000237104.1:c.388G>A	ENSMUSP00000157424.1:p.Ala130Thr	H-2-Kb	9	7	5	SNRMTFVSV	SNRMAFVSV	NetMHC	178.04	258.25	1.451	122	0.057	359.399	446.871	1.243	258.25	178.04	172.8	189	635.4918716	529.7976163	728.1988689	650.5040428	DC1638T7	1.014285714	1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.071	122	9	1	0.111111111	19qC1	chr19-4320845-60850867	3	2	1	0.776	3.172152134	NA	1	0.290235569	sgMsh2	autochthonous
chr12	98275909	98275909	G	A	ENSMUST00000075072.5	1	ENSMUSG00000021886	missense	V/I	274	Gpr65	ENSMUST00000075072.5:c.820G>A	ENSMUSP00000074581.4:p.Val274Ile	H-2-Kb	9	7	5	TVYRITVAL	TVYRVTVAL	NetMHCpan	77.1	98.2	1.274	275	0.065	259.184	301.199	1.162	201.3	184.75	98.2	77.1	458.2579416	371.6293451	401.0975415	333.6184037	DC1638T7	1.114285714	1.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.066	275	7	0	0	12qE	chr12-3237715-119465464	4	2	2	0.776	3.172152134	NA	1	0.269796444	sgMsh2	autochthonous
chr2	65763706	65763706	G	T	ENSMUST00000028377.13	5	ENSMUSG00000075318	missense	R/M	1633	Scn2a	ENSMUST00000028377.13:c.4898G>T	ENSMUSP00000028377.7:p.Arg1633Met	H-2-Kb	9	10	2	AMIGRILRL	ARIGRILRL	SMMPMBEC	131.902	849.669	6.442	367	0.025	177.347	1854.117	10.455	2675.21	205.72	4047.6	222.2	1033.023021	148.9738357	849.6694433	131.9015807	DC1638T7	1.028571429	1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.024	367	0	0	NA	2qC1.3	chr2-4925576-181511691	3	2	1	0.776	3.172152134	NA	1	0.098107798	sgMsh2	autochthonous
chr8	48276309	48276309	G	A	ENSMUST00000033965.13	1	ENSMUSG00000031561	missense	T/M	1554	Tenm3	ENSMUST00000033965.13:c.4661C>T	ENSMUSP00000033965.6:p.Thr1554Met	H-2-Kb	9	7	5	VSLVMGDYL	VSLVTGDYL	NetMHC	267.42	557.53	2.085	172	0.081	393.996	819.07	2.079	557.53	267.42	1161.4	463.5	706.4964761	369.9218633	931.6440185	418.0709584	DC1638T7	1.214285714	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.092	172	0	0	NA	8qB1.1	chr8-3511896-126969919	4	2	2	0.776	3.172152134	NA	1	0.376079892	sgMsh2	autochthonous
chr9	38143329	38143329	T	C	ENSMUST00000079804.1	NA	ENSMUSG00000096409	missense	Y/H	65	Olfr890	ENSMUST00000079804.1:c.193T>C	ENSMUSP00000078733.1:p.Tyr65His	H-2-Kb	9	9	3	PMHYFLFNL	PMYYFLFNL	SMM	96.852	17.026	0.176	422	0.017	267.003	49.519	0.185	66.51	386.75	86.7	357.3	17.02589693	96.8523137	32.52744865	176.7054726	DC1638T7	0.742857143	0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.021	422	0	0	NA	9qA5.1	chr9-5306814-124108155	2	1	1	0.776	3.172152134	NA	1	0.085844323	sgMsh2	autochthonous
chr2	86677262	86677262	G	T	ENSMUST00000213198.1	5	ENSMUSG00000075175	missense	L/I	24	Olfr1086	ENSMUST00000213198.1:c.70C>A	ENSMUSP00000150094.1:p.Leu24Ile	H-2-Kb	9	9	3	EIISFFLFL	EILSFFLFL	NetMHCpan	278.9	372.9	1.337	174	0.086	335.709	377.532	1.125	457.27	433.5	372.9	278.9	302.7680195	301.3769268	382.1641989	370.0411313	DC1638T7	2.814285714	2.914285714	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.082	174	0	0	NA	2qD	chr2-4925576-181511691	3	2	1	0.776	3.172152134	NA	1	0.335201643	sgMsh2	autochthonous
chr9	38143329	38143329	T	C	ENSMUST00000079804.1	NA	ENSMUSG00000096409	missense	Y/H	65	Olfr890	ENSMUST00000079804.1:c.193T>C	ENSMUSP00000078733.1:p.Tyr65His	H-2-Kb	9	7	5	HTPMHYFLF	HTPMYYFLF	NetMHCpan	312.3	171.6	0.549	422	0.017	393.31	314.094	0.799	361.43	488.04	171.6	312.3	278.0417415	346.8246846	350.1466697	439.7947088	DC1638T7	0.742857143	0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.021	422	0	0	NA	9qA5.1	chr9-5306814-124108155	2	1	1	0.776	3.172152134	NA	1	0.085844323	sgMsh2	autochthonous
chr17	30925645	30925645	G	A	ENSMUST00000114574.2	1	ENSMUSG00000024027	missense	R/H	264	Glp1r	ENSMUST00000114574.2:c.791G>A	ENSMUSP00000110221.1:p.Arg264His	H-2-Kb	9	11	1	HIFKLYLSI	RIFKLYLSI	NetMHCpan	203.9	80.7	0.396	32	0.094	377.745	333.365	0.883	380.08	728.13	80.7	203.9	344.4371603	374.2053566	322.2923521	381.2852457	DC1638T7	1.271428571	1.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.132	32	1	0	0	17qA3.3	chr17-3077483-90208269	3	2	1	0.776	3.172152134	NA	1	0.539592889	sgMsh2	autochthonous
chr7	108346492	108346492	G	T	ENSMUST00000080106.1	NA	ENSMUSG00000093980	missense	T/N	163	Olfr493	ENSMUST00000080106.1:c.488C>A	ENSMUSP00000079005.1:p.Thr163Asn	H-2-Db	9	7	5	ASSFNLFFL	ASSFTLFFL	NetMHCpan	81.1	5177.2	63.837	234	0.175	136.724	6283.785	45.96	8550.19	187.88	5177.2	81.1	6132.252091	126.363021	6435.317817	147.085547	DC1640T2	1.671428571	1.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.177	234	0	0	NA	7qE3	chr7-4692757-143062472	5	3	2	0.794	4.851550594	RARE KARYOTYPE	1	1	sgMsh2	autochthonous
chr17	34803605	34803605	C	T	ENSMUST00000025223.8	1	ENSMUSG00000024365	missense	G/S	127	Cyp21a1	ENSMUST00000025223.8:c.379G>A	ENSMUSP00000025223.7:p.Gly127Ser	H-2-Db	9	8	4	LMLSMRDSM	LMLGMRDSM	SMM	232.071	554.141	2.388	92	0.043	316.014	1072.74	3.395	2171.04	359.4	1582.4	550.5	554.1406375	232.0705332	563.0798678	272.6277127	DC1640T2	-0.285714286	0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.055	92	78	1	0.012820513	17qB1	NA	NA	NA	NA	0.794	4.851550594	RARE KARYOTYPE	NA	NA	sgMsh2	autochthonous
chr10	81022343	81022343	G	A	ENSMUST00000055125.4	1	ENSMUSG00000043670	missense	L/F	25	Diras1	ENSMUST00000055125.4:c.73C>T	ENSMUSP00000055605.4:p.Leu25Phe	H-2-Kb	8	7	5	SSLVFRFV	SSLVLRFV	NetMHC	9.95	376.1	37.799	63	0.19	27.888	353.136	12.663	376.1	9.95	695.9	29	282.3189304	26.77564861	330.1718172	30.95565516	DC1640T2	1.785714286	1.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.203	63	0	0	NA	10qC1	chr10-5103436-130453386	5	3	2	0.794	4.851550594	RARE KARYOTYPE	1	1	sgMsh2	autochthonous
chr7	108346492	108346492	G	T	ENSMUST00000080106.1	NA	ENSMUSG00000093980	missense	T/N	163	Olfr493	ENSMUST00000080106.1:c.488C>A	ENSMUSP00000079005.1:p.Thr163Asn	H-2-Kb	8	8	4	SSFNLFFL	SSFTLFFL	NetMHC	12.58	14.15	1.125	234	0.175	15.705	15.07	0.96	14.15	12.58	14.3	13.8	15.83944645	17.60921516	18.10256018	21.56453014	DC1640T2	1.671428571	1.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.177	234	0	0	NA	7qE3	chr7-4692757-143062472	5	3	2	0.794	4.851550594	RARE KARYOTYPE	1	1	sgMsh2	autochthonous
chr14	59226489	59226489	C	A	ENSMUST00000022551.13	1	ENSMUSG00000035469	missense	L/M	346	Rcbtb1	ENSMUST00000022551.13:c.1036C>A	ENSMUSP00000022551.7:p.Leu346Met	H-2-Kb	8	6	6	VSWRLMSV	VSWRLLSV	NetMHC	23.31	94.5	4.054	105	0.381	55.371	101.539	1.834	94.5	23.31	57.3	39.5	122.1068422	74.42862571	108.5775406	71.24263926	DC1640T2	0.414285714	0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.402	105	36	16	0.444444444	14qC3	NA	NA	NA	NA	0.794	4.851550594	RARE KARYOTYPE	NA	NA	sgMsh2	autochthonous
chr13	48490013	48490013	C	T	ENSMUST00000177530.7	1	ENSMUSG00000050954	missense	R/H	546	Zfp169	ENSMUST00000177530.7:c.1637G>A	ENSMUSP00000135414.1:p.Arg546His	H-2-Kb	8	11	1	HTFEFKSL	RTFEFKSL	NetMHCpan	20.2	7.5	0.371	73	0.096	40.792	15.268	0.374	11.05	39.73	7.5	20.2	19.48677632	51.61072977	19.57672319	41.85429201	DC1640T2	0.071428571	0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.106	73	0	0	NA	13qA5	NA	NA	NA	NA	0.794	4.851550594	RARE KARYOTYPE	NA	NA	sgMsh2	autochthonous
chr2	119328724	119328724	TC	T	ENSMUST00000102517.3	1	ENSMUSG00000027314	FS	I/X	255	Dll4	ENSMUST00000102517.3:c.769del	ENSMUSP00000099575.3:p.His257ThrfsTer109	H-2-Kb	8	78	0	VSWDSASV	NA	SMM	162.084	NA	NA	117	0.462	191.205	NA	NA	NA	225.78	NA	215.4	NA	162.0839455	NA	167.0090478	DC1640T2	-0.114285714	-0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.453	117	12	0	0	2qE5	chr2-3197272-181511691	5	3	2	0.794	4.851550594	RARE KARYOTYPE	3	1	sgMsh2	autochthonous
chr17	35886225	35886225	AC	A	ENSMUST00000025292.14	1	ENSMUSG00000024422	FS	P/X	667	Dhx16	ENSMUST00000025292.14:c.2004del	ENSMUSP00000025292.8:p.Ala670ProfsTer81	H-2-Kb	8	57	0	RSPPAARL	NA	SMM	273.363	NA	NA	50	0.24	368.564	NA	NA	NA	362.38	NA	659.8	NA	273.3631687	NA	374.7485835	DC1640T2	-0.157142857	-0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.206	50	23	2	0.086956522	17qB1	NA	NA	NA	NA	0.794	4.851550594	RARE KARYOTYPE	NA	NA	sgMsh2	autochthonous
chr17	75348895	75348895	TC	T	ENSMUST00000135447.7	1	ENSMUSG00000001870	FS	L/X	968	Ltbp1	ENSMUST00000135447.7:c.2914del	ENSMUSP00000116890.1:p.His972ThrfsTer?	H-2-Kb	8	15	1	TSSCFICL	NA	SMMPMBEC	292.914	NA	NA	28	0.25	478.044	NA	NA	NA	725.74	NA	659.1	NA	296.9887511	NA	292.9139126	DC1640T2	2.071428571	2.071428571	FALSE	FALSE	FALSE	2	FALSE	0	Strelka2;Vardict	2	0.25	28	0	0	NA	17qE2	NA	NA	NA	NA	0.794	4.851550594	RARE KARYOTYPE	NA	NA	sgMsh2	autochthonous
chr13	48490013	48490013	C	T	ENSMUST00000177530.7	1	ENSMUSG00000050954	missense	R/H	546	Zfp169	ENSMUST00000177530.7:c.1637G>A	ENSMUSP00000135414.1:p.Arg546His	H-2-Kb	9	11	1	HTFEFKSLL	RTFEFKSLL	NetMHCpan	39.8	15.3	0.384	73	0.096	94.772	77.366	0.816	17.61	40.57	15.3	39.8	137.1229033	148.9738357	182.9152858	216.3963843	DC1640T2	0.714285714	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.106	73	0	0	NA	13qA5	NA	NA	NA	NA	0.794	4.851550594	RARE KARYOTYPE	NA	NA	sgMsh2	autochthonous
chr7	108346492	108346492	G	T	ENSMUST00000080106.1	NA	ENSMUSG00000093980	missense	T/N	163	Olfr493	ENSMUST00000080106.1:c.488C>A	ENSMUSP00000079005.1:p.Thr163Asn	H-2-Kb	9	10	2	FNLFFLSFL	FTLFFLSFL	NetMHCpan	57.7	181.3	3.142	234	0.175	90.872	181.868	2.001	108.1	65.57	181.3	57.7	182.4357725	116.1742828	211.4706012	144.6272072	DC1640T2	2.714285714	2.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.177	234	0	0	NA	7qE3	chr7-4692757-143062472	5	3	2	0.794	4.851550594	RARE KARYOTYPE	1	1	sgMsh2	autochthonous
chr3	59209995	59209995	C	T	ENSMUST00000040622.2	1	ENSMUSG00000036362	missense	A/T	121	P2ry13	ENSMUST00000040622.2:c.361G>A	ENSMUSP00000044730.1:p.Ala121Thr	H-2-Kb	9	10	2	ITFDRFLKI	IAFDRFLKI	NetMHCpan	18.2	16.9	0.929	243	0.103	62.235	51.016	0.82	57.85	67.42	16.9	18.2	69.52003787	95.74365443	44.18247089	57.04925797	DC1640T2	0.285714286	0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.104	243	0	0	NA	3qD	chr3-15331914-159911278	6	3	3	0.794	4.851550594	RARE KARYOTYPE	1	0.635467584	sgMsh2	autochthonous
chr8	105976162	105976162	AC	A	ENSMUST00000034371.8	1	ENSMUSG00000031898	FS	V/X	323	Dpep3	ENSMUST00000034371.8:c.967del	ENSMUSP00000034371.7:p.Val323CysfsTer13	H-2-Kb	9	7	5	LSMGCYSAV	NA	NetMHC	111.48	NA	NA	203	0.177	249.163	NA	NA	NA	111.48	NA	338	NA	264.3078123	NA	234.0183969	DC1640T2	1.128571429	1.128571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.172	203	3	0	0	8qD3	chr8-3203083-126969919	4	2	2	0.794	4.851550594	RARE KARYOTYPE	1	1	sgMsh2	autochthonous
chr7	108346492	108346492	G	T	ENSMUST00000080106.1	NA	ENSMUSG00000093980	missense	T/N	163	Olfr493	ENSMUST00000080106.1:c.488C>A	ENSMUSP00000079005.1:p.Thr163Asn	H-2-Kb	9	9	3	SFNLFFLSF	SFTLFFLSF	SMM	205.168	221.876	1.081	234	0.175	295.51	355.96	1.205	395.51	310.96	1253.9	1028.6	221.8758325	205.1681772	316.4098538	280.0593007	DC1640T2	1.671428571	1.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.177	234	0	0	NA	7qE3	chr7-4692757-143062472	5	3	2	0.794	4.851550594	RARE KARYOTYPE	1	1	sgMsh2	autochthonous
chr1	97761471	97761471	C	T	ENSMUST00000042509.12	1	ENSMUSG00000040648	missense	R/H	29	Ppip5k2	ENSMUST00000042509.12:c.86G>A	ENSMUSP00000043401.7:p.Arg29His	H-2-Kb	9	4	8	INPGNYRHF	INPGNYRRF	SMM	317.768	294.517	0.927	162	0.043	372.233	341.523	0.917	350.96	371.86	984.9	1073.9	294.5167504	317.7678825	332.0855664	372.6061339	DC1640T2	-1.671428571	-1.471428571	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;Vardict	3	0.047	162	4	0	0	1qD	chr1-4783928-193194439	5	3	2	0.794	4.851550594	RARE KARYOTYPE	1	0.287182466	sgMsh2	autochthonous
chr7	108346492	108346492	G	T	ENSMUST00000080106.1	NA	ENSMUSG00000093980	missense	T/N	163	Olfr493	ENSMUST00000080106.1:c.488C>A	ENSMUSP00000079005.1:p.Thr163Asn	H-2-Kb	9	8	4	SSFNLFFLS	SSFTLFFLS	SMM	135.866	140.965	1.038	234	0.175	248.499	286.4	1.153	926.2	574.83	330	261.9	140.9645794	135.865753	242.8007366	235.0985768	DC1640T2	1.671428571	1.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.177	234	0	0	NA	7qE3	chr7-4692757-143062472	5	3	2	0.794	4.851550594	RARE KARYOTYPE	1	1	sgMsh2	autochthonous
chr9	80136750	80136750	GA	G	ENSMUST00000165607.8	1	ENSMUSG00000034252	FS	K/X	888	Senp6	ENSMUST00000165607.8:c.2672del	ENSMUSP00000126777.2:p.Asn891IlefsTer44	H-2-Db	9	42	0	ASGMNASVL	NA	NetMHC	36.8	NA	NA	125	0.28	141.593	NA	NA	NA	36.8	NA	75.9	NA	216.0827011	NA	207.2860138	DC1640T8	1	1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.281	125	175	21	0.12	9qE1	chr9-3347922-124108155	4	2	2	0.769	4.12199525	NA	1	1	sgMsh2	autochthonous
chr2	88034599	88034599	C	CA	ENSMUST00000129056.2	2	ENSMUSG00000075140	FS	C/LX	180	Olfr73	ENSMUST00000129056.2:c.538dup	ENSMUSP00000149472.1:p.Cys180LeufsTer2	H-2-Db	9	3	9	FNMINHFFL	FNMINHFFC	NetMHCpan	14.3	2701.7	188.93	104	0.058	97.196	2276.805	23.425	3384.87	38.95	2701.7	14.3	1851.910525	161.2946639	1097.91824	155.4425814	DC1640T8	1.3	1.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.072	104	0	0	NA	2qD	chr2-3197193-181684255	4	2	2	0.769	4.12199525	NA	1	0.385934536	sgMsh2	autochthonous
chr17	12913899	12913899	GT	G	ENSMUST00000079121.3	1	ENSMUSG00000057388	FS	K/X	114	Mrpl18	ENSMUST00000079121.3:c.342del	ENSMUSP00000078123.3:p.Lys114AsnfsTer24	H-2-Db	9	7	5	WAIKNTFIV	NA	NetMHCpan	25	NA	NA	102	0.167	92.111	NA	NA	NA	62.71	NA	25	NA	121.5122325	NA	123.4724313	DC1640T8	1.128571429	1.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.176	102	108	3	0.027777778	17qA1	chr17-3077483-94834206	4	2	2	0.769	4.12199525	NA	1	0.943395532	sgMsh2	autochthonous
chr9	59871809	59871809	GA	G	ENSMUST00000136740.7	5	ENSMUSG00000039585	FS	E/X	1616	Myo9a	ENSMUST00000136740.7:c.4854del	ENSMUSP00000122852.1:p.Gly1619GlufsTer92	H-2-Db	9	31	0	RAPNMMLPI	NA	NetMHCpan	142.1	NA	NA	133	0.188	164.855	NA	NA	NA	158.09	NA	142.1	NA	202.5909309	NA	171.6208308	DC1640T8	0.771428571	0.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.188	133	31	4	0.129032258	9qB	chr9-3347922-124108155	4	2	2	0.769	4.12199525	NA	1	1	sgMsh2	autochthonous
chr13	113210095	113210095	CT	C	ENSMUST00000038144.8	1	ENSMUSG00000042379	FS	F/X	85	Esm1	ENSMUST00000038144.8:c.256del	ENSMUSP00000040187.8:p.Tyr86ThrfsTer40	H-2-Db	9	40	0	LAIASRAYV	NA	NetMHC	209.26	NA	NA	135	0.081	393.575	NA	NA	NA	209.26	NA	364.9	NA	445.2664776	NA	422.2503323	DC1640T8	0.814285714	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.09	135	28	0	0	13qD2.2	chr13-3554284-119495179	4	2	2	0.769	4.12199525	NA	1	0.48241817	sgMsh2	autochthonous
chr10	11457202	11457202	A	G	ENSMUST00000069106.4	1	ENSMUSG00000055493	missense	T/A	260	Epm2a	ENSMUST00000069106.4:c.778A>G	ENSMUSP00000066050.4:p.Thr260Ala	H-2-Db	9	4	8	ALLENGHAV	ALLENGHTV	SMM	378.983	224.192	0.592	55	0.127	440.101	253.496	0.576	114.89	419.34	282.8	572.3	224.1919425	378.9832362	286.1343518	460.8610447	DC1640T8	-0.114285714	-0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.136	55	0	0	NA	10qA1	chr10-6920214-130423120	4	2	2	0.769	4.12199525	NA	1	0.728987456	sgMsh2	autochthonous
chr19	13365247	13365247	A	AT	ENSMUST00000215096.1	5	ENSMUSG00000049015	FS	-/X	206-207	Olfr1467	ENSMUST00000215096.1:c.624dup	ENSMUSP00000149487.1:p.Ala209CysfsTer46	H-2-Kb	8	38	0	TSQGYIHL	NA	NetMHC	43.98	NA	NA	191	0.188	85.595	NA	NA	NA	43.98	NA	91.1	NA	82.93541077	NA	88.25513833	DC1640T8	-0.128571429	-0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.186	191	0	0	NA	19qA	chr19-3600535-60850867	4	2	2	0.769	4.12199525	NA	1	0.996997551	sgMsh2	autochthonous
chr11	29560765	29560765	C	T	ENSMUST00000020753.3	1	ENSMUSG00000020461	missense	L/F	256	Clhc1	ENSMUST00000020753.3:c.766C>T	ENSMUSP00000020753.3:p.Leu256Phe	H-2-Kb	8	7	5	ISHTFTPW	ISHTLTPW	NetMHC	47	1922.73	40.909	269	0.037	60.351	1336.088	22.139	1922.73	47	3127.3	373.5	531.7897962	50.43592613	749.4454029	70.26515361	DC1640T8	-0.728571429	0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.044	269	0	0	NA	11qA3.3	chr11-3133205-69579350	4	2	2	0.769	4.12199525	NA	1	0.235848883	sgMsh2	autochthonous
chr2	88185053	88185053	T	C	ENSMUST00000215996.1	3	ENSMUSG00000061342	missense	F/L	59	Olfr1168	ENSMUST00000215996.1:c.175T>C	ENSMUSP00000149517.1:p.Phe59Leu	H-2-Kb	8	9	3	MYLFLSHL	MYFFLSHL	NetMHCpan	28.9	18.4	0.637	451	0.089	287.934	102.23	0.355	79.22	52.58	18.4	28.9	125.2391179	523.2870654	128.7478543	556.8522772	DC1640T8	1.271428571	1.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.091	451	0	0	NA	2qD	chr2-3197193-181684255	4	2	2	0.769	4.12199525	NA	1	0.487778372	sgMsh2	autochthonous
chr11	98152821	98152821	AC	A	ENSMUST00000092735.11	1	ENSMUSG00000018160	FS	V/X	595	Med1	ENSMUST00000092735.11:c.1783del	ENSMUSP00000090411.5:p.Val595PhefsTer7	H-2-Kb	8	9	3	FMFFFSFF	FMVFFFFF	SMMPMBEC	119.053	1020.328	8.57	64	0.312	135.28	1271.189	9.397	1321.31	138.51	4097.2	147.2	1221.068422	132.0504848	1020.328459	119.0529058	DC1640T8	2.157142857	2.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.297	64	42	5	0.119047619	11qD	chr11-69590981-121956809	4	2	2	0.769	4.12199525	NA	2	1	sgMsh2	autochthonous
chr19	13365247	13365247	A	AT	ENSMUST00000215096.1	5	ENSMUSG00000049015	FS	-/X	206-207	Olfr1467	ENSMUST00000215096.1:c.624dup	ENSMUSP00000149487.1:p.Ala209CysfsTer46	H-2-Kb	8	8	7	SFHIFFCL	SFHIFFAF	SMM	82.745	452.627	5.47	191	0.188	114.414	444.441	3.885	247.16	141.18	757.5	206.1	452.6265239	82.74466462	436.2545806	87.64759423	DC1640T8	2.285714286	2.285714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.186	191	0	0	NA	19qA	chr19-3600535-60850867	4	2	2	0.769	4.12199525	NA	1	0.996997551	sgMsh2	autochthonous
chr19	13365247	13365247	A	AT	ENSMUST00000215096.1	5	ENSMUSG00000049015	FS	-/X	206-207	Olfr1467	ENSMUST00000215096.1:c.624dup	ENSMUSP00000149487.1:p.Ala209CysfsTer46	H-2-Kb	8	12	3	FFCLYSYL	NA	SMM	50.089	NA	NA	191	0.188	142.252	NA	NA	NA	231.57	NA	326.2	NA	50.08872766	NA	52.93464441	DC1640T8	1.357142857	1.357142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.186	191	0	0	NA	19qA	chr19-3600535-60850867	4	2	2	0.769	4.12199525	NA	1	0.996997551	sgMsh2	autochthonous
chr2	153399446	153399446	AG	A	ENSMUST00000109790.1	5	ENSMUSG00000042548	FS	G/X	640	Asxl1	ENSMUST00000109790.1:c.1925del	ENSMUSP00000105413.1:p.Gly642ValfsTer58	H-2-Kb	8	33	0	VVMVVRPV	NA	NetMHC	253.25	NA	NA	82	0.122	329.794	NA	NA	NA	253.25	NA	280.5	NA	467.4552051	NA	379.0879676	DC1640T8	1.8	1.8	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.122	82	53	5	0.094339623	2qH1	chr2-3197193-181684255	4	2	2	0.769	4.12199525	NA	1	0.65394463	sgMsh2	autochthonous
chr19	13365247	13365247	A	AT	ENSMUST00000215096.1	5	ENSMUSG00000049015	FS	-/X	206-207	Olfr1467	ENSMUST00000215096.1:c.624dup	ENSMUSP00000149487.1:p.Ala209CysfsTer46	H-2-Kb	8	40	0	QGYIHLCL	NA	NetMHCpan	198.4	NA	NA	191	0.188	247.251	NA	NA	NA	256.96	NA	198.4	NA	237.5417764	NA	346.5293309	DC1640T8	1.385714286	1.385714286	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.186	191	0	0	NA	19qA	chr19-3600535-60850867	4	2	2	0.769	4.12199525	NA	1	0.996997551	sgMsh2	autochthonous
chr8	72885721	72885721	C	A	ENSMUST00000212459.1	1	ENSMUSG00000004383	missense	M/I	325	Large1	ENSMUST00000212459.1:c.975G>T	ENSMUSP00000148336.1:p.Met325Ile	H-2-Kb	8	11	1	IGMLSTSL	MGMLSTSL	NetMHCpan	157.5	341.8	2.17	137	0.058	302.49	801.767	2.651	1113.2	258.45	341.8	157.5	850.6286381	425.3436955	752.9046857	346.5293309	DC1640T8	0.971428571	1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.074	137	62	2	0.032258065	8qB3.3	chr8-3624720-126969919	4	2	2	0.769	4.12199525	NA	1	0.39665494	sgMsh2	autochthonous
chr2	153399446	153399446	AG	A	ENSMUST00000109790.1	5	ENSMUSG00000042548	FS	G/X	640	Asxl1	ENSMUST00000109790.1:c.1925del	ENSMUSP00000105413.1:p.Gly642ValfsTer58	H-2-Kb	8	36	0	VVRPVATL	NA	SMM	210.737	NA	NA	82	0.122	296.367	NA	NA	NA	295.06	NA	306	NA	210.7366151	NA	297.6733808	DC1640T8	1.028571429	1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.122	82	53	5	0.094339623	2qH1	chr2-3197193-181684255	4	2	2	0.769	4.12199525	NA	1	0.65394463	sgMsh2	autochthonous
chr10	11457202	11457202	A	G	ENSMUST00000069106.4	1	ENSMUSG00000055493	missense	T/A	260	Epm2a	ENSMUST00000069106.4:c.778A>G	ENSMUSP00000066050.4:p.Thr260Ala	H-2-Kb	8	11	1	AVYVHCNA	TVYVHCNA	NetMHC	297.84	255.21	0.857	55	0.127	326.891	264.287	0.808	255.21	297.84	310.3	374.7	273.3631687	344.9371732	242.5157786	308.8445912	DC1640T8	0.671428571	0.671428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.136	55	0	0	NA	10qA1	chr10-6920214-130423120	4	2	2	0.769	4.12199525	NA	1	0.728987456	sgMsh2	autochthonous
chr5	144556260	144556260	A	T	ENSMUST00000071782.7	1	ENSMUSG00000059991	missense	I/F	386	Nptx2	ENSMUST00000071782.7:c.1156A>T	ENSMUSP00000071687.6:p.Ile386Phe	H-2-Kb	8	7	5	RAQEFINI	RAQEIINI	NetMHCpan	272.2	5902.1	21.683	86	0.209	382.787	13719.338	35.841	13483.35	323.25	5902.1	272.2	13955.32644	442.3234863	14247.54378	569.823033	DC1640T8	0.442857143	0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.205	86	0	0	NA	5qG2	chr5-3582301-150548378	4	2	2	0.769	4.12199525	NA	1	1	sgMsh2	autochthonous
chr15	101202988	101202988	GA	G	ENSMUST00000000544.11	1	ENSMUSG00000000532	FS	K/X	344	Acvr1b	ENSMUST00000000544.11:c.1037del	ENSMUSP00000000544.9:p.Asn346MetfsTer22	H-2-Kb	8	24	0	LSVMMRSL	NA	NetMHCpan	266.6	NA	NA	85	0.141	394.323	NA	NA	NA	389.86	NA	266.6	NA	593.9364789	NA	398.7860888	DC1640T8	0.814285714	0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1412	85	94	7	0.074468085	15qF1	chr15-3327923-102317306	4	2	2	0.769	4.12199525	NA	1	0.756860506	sgMsh2	autochthonous
chr2	88185053	88185053	T	C	ENSMUST00000215996.1	3	ENSMUSG00000061342	missense	F/L	59	Olfr1168	ENSMUST00000215996.1:c.175T>C	ENSMUSP00000149517.1:p.Phe59Leu	H-2-Kb	8	6	6	HTPMYLFL	HTPMYFFL	NetMHCpan	219.6	117.9	0.537	451	0.089	292.515	176.956	0.605	197.23	407.26	117.9	219.6	194.4195797	316.0385059	159.4924025	268.9923939	DC1640T8	1.242857143	1.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.091	451	0	0	NA	2qD	chr2-3197193-181684255	4	2	2	0.769	4.12199525	NA	1	0.487778372	sgMsh2	autochthonous
chr18	9213005	9213005	C	T	ENSMUST00000041080.6	NA	ENSMUSG00000036904	missense	S/L	29	Fzd8	ENSMUST00000041080.6:c.86C>T	ENSMUSP00000039660.5:p.Ser29Leu	H-2-Kb	8	4	8	SSGAAAAL	SSGAAAAS	SMM	226.851	3004.277	13.243	125	0.152	478.035	14495.703	30.324	25620.24	706.76	24496.3	2542.2	3004.277187	226.8506354	4495.106648	249.310173	DC1640T8	1.4	1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.158	125	17	4	0.235294118	18qA1	chr18-3423654-89073490	4	3	1	0.769	4.12199525	NA	1	0.846911898	sgMsh2	autochthonous
chr1	163959302	163959303	GAT	G	ENSMUST00000045876.7	1	ENSMUSG00000041406	FS	IS/IX	732-733	BC055324	ENSMUST00000045876.7:c.2196_2197del	ENSMUSP00000043143.6:p.Gln734AsnfsTer38	H-2-Kb	8	23	0	VLYSYFTD	NA	SMMPMBEC	144.125	NA	NA	240	0.083	445.503	NA	NA	NA	1781.75	NA	720.5	NA	170.5061311	NA	144.1252256	DC1640T8	-0.142857143	0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.08	240	8	0	0	1qH2.1	chr1-4867294-195062457	4	2	2	0.769	4.12199525	NA	1	0.428816151	sgMsh2	autochthonous
chr2	88185053	88185053	T	C	ENSMUST00000215996.1	3	ENSMUSG00000061342	missense	F/L	59	Olfr1168	ENSMUST00000215996.1:c.175T>C	ENSMUSP00000149517.1:p.Phe59Leu	H-2-Kb	9	8	4	PMYLFLSHL	PMYFFLSHL	SMM	12.797	13.744	1.074	451	0.089	25.891	27.523	1.063	44.85	28.38	32.8	39.4	13.74390042	12.79705392	22.24590099	23.40183969	DC1640T8	1.271428571	1.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.091	451	0	0	NA	2qD	chr2-3197193-181684255	4	2	2	0.769	4.12199525	NA	1	0.487778372	sgMsh2	autochthonous
chr19	13365247	13365247	A	AT	ENSMUST00000215096.1	5	ENSMUSG00000049015	FS	-/X	206-207	Olfr1467	ENSMUST00000215096.1:c.624dup	ENSMUSP00000149487.1:p.Ala209CysfsTer46	H-2-Kb	9	11	4	IFFCLYSYL	NA	NetMHCpan	28.1	NA	NA	191	0.188	32.42	NA	NA	NA	33.93	NA	28.1	NA	31.63078717	NA	33.20855664	DC1640T8	1.357142857	2.042857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.186	191	0	0	NA	19qA	chr19-3600535-60850867	4	2	2	0.769	4.12199525	NA	1	0.996997551	sgMsh2	autochthonous
chr19	13365247	13365247	A	AT	ENSMUST00000215096.1	5	ENSMUSG00000049015	FS	-/X	206-207	Olfr1467	ENSMUST00000215096.1:c.624dup	ENSMUSP00000149487.1:p.Ala209CysfsTer46	H-2-Kb	9	7	8	VSFHIFFCL	VSFHIFFAF	NetMHCpan	33.5	78.7	2.349	191	0.188	55.413	74.201	1.339	111.08	72.27	78.7	33.5	66.2384254	59.03505878	69.702764	51.79048762	DC1640T8	2.285714286	2.285714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.186	191	0	0	NA	19qA	chr19-3600535-60850867	4	2	2	0.769	4.12199525	NA	1	0.996997551	sgMsh2	autochthonous
chr3	100472711	100472711	AC	A	ENSMUST00000061455.8	1	ENSMUSG00000044468	FS	G/X	243	Tent5c	ENSMUST00000061455.8:c.728del	ENSMUSP00000056872.8:p.Gly243ValfsTer66	H-2-Kb	9	11	1	VSLSTATSL	NA	NetMHC	130.07	NA	NA	81	0.074	252.221	NA	NA	NA	130.07	NA	207.2	NA	297.2418804	NA	509.6241499	DC1640T8	0.914285714	0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.079	81	4	0	0	3qF2.2	chr3-5397880-159911278	4	2	2	0.769	4.12199525	NA	1	0.423455949	sgMsh2	autochthonous
chr11	29560765	29560765	C	T	ENSMUST00000020753.3	1	ENSMUSG00000020461	missense	L/F	256	Clhc1	ENSMUST00000020753.3:c.766C>T	ENSMUSP00000020753.3:p.Leu256Phe	H-2-Kb	9	7	5	ISHTFTPWM	ISHTLTPWM	NetMHCpan	87	1082.5	12.443	269	0.037	181.113	885.774	4.891	1915.04	174.68	1082.5	87	688.8267433	187.5469475	689.0488306	211.4706012	DC1640T8	-0.342857143	0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.044	269	0	0	NA	11qA3.3	chr11-3133205-69579350	4	2	2	0.769	4.12199525	NA	1	0.235848883	sgMsh2	autochthonous
chr9	80136750	80136750	GA	G	ENSMUST00000165607.8	1	ENSMUSG00000034252	FS	K/X	888	Senp6	ENSMUST00000165607.8:c.2672del	ENSMUSP00000126777.2:p.Asn891IlefsTer44	H-2-Kb	9	47	0	ASVLYIIQM	NA	NetMHC	227.71	NA	NA	125	0.28	259.534	NA	NA	NA	227.71	NA	259.5	NA	350.0338139	NA	259.5673122	DC1640T8	2.014285714	2.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.281	125	175	21	0.12	9qE1	chr9-3347922-124108155	4	2	2	0.769	4.12199525	NA	1	1	sgMsh2	autochthonous
chr2	88185053	88185053	T	C	ENSMUST00000215996.1	3	ENSMUSG00000061342	missense	F/L	59	Olfr1168	ENSMUST00000215996.1:c.175T>C	ENSMUSP00000149517.1:p.Phe59Leu	H-2-Kb	9	11	1	LFLSHLSFL	FFLSHLSFL	SMM	274.859	282.56	1.028	451	0.089	352.155	396.828	1.127	369.77	335.12	789.8	581.1	282.5595563	274.859024	423.8869047	369.1900603	DC1640T8	1.342857143	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.091	451	0	0	NA	2qD	chr2-3197193-181684255	4	2	2	0.769	4.12199525	NA	1	0.487778372	sgMsh2	autochthonous
chr7	72127253	72127253	CA	C	ENSMUST00000079323.7	1	ENSMUSG00000032776	FS	L/X	698	Mctp2	ENSMUST00000079323.7:c.2093del	ENSMUSP00000078302.5:p.Leu698TrpfsTer11	H-2-Kb	9	8	4	VVFWSPSGI	NA	NetMHCpan	228.8	NA	NA	108	0.065	366.706	NA	NA	NA	364.34	NA	228.8	NA	369.0710667	NA	460.5215948	DC1640T8	0.4	1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.078	108	0	0	NA	7qD1	chr7-4692757-142893198	4	3	1	0.769	4.12199525	NA	1	0.418095747	sgMsh2	autochthonous
chr19	13365247	13365247	A	AT	ENSMUST00000215096.1	5	ENSMUSG00000049015	FS	-/X	206-207	Olfr1467	ENSMUST00000215096.1:c.624dup	ENSMUSP00000149487.1:p.Ala209CysfsTer46	H-2-Kb	9	14	1	CLYSYLDIL	NA	SMM	286.49	NA	NA	191	0.188	398.735	NA	NA	NA	430.17	NA	367.3	NA	286.4903513	NA	480.0096849	DC1640T8	0.742857143	0.742857143	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.186	191	0	0	NA	19qA	chr19-3600535-60850867	4	2	2	0.769	4.12199525	NA	1	0.996997551	sgMsh2	autochthonous
chr1	163959302	163959303	GAT	G	ENSMUST00000045876.7	1	ENSMUSG00000041406	FS	IS/IX	732-733	BC055324	ENSMUST00000045876.7:c.2196_2197del	ENSMUSP00000043143.6:p.Gln734AsnfsTer38	H-2-Kb	9	20	0	AQLVLYSYF	NA	SMM	415.059	NA	NA	240	0.083	484.637	NA	NA	NA	471.25	NA	762.3	NA	415.0591573	NA	498.023688	DC1640T8	1.6	1.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.08	240	8	0	0	1qH2.1	chr1-4867294-195062457	4	2	2	0.769	4.12199525	NA	1	0.428816151	sgMsh2	autochthonous
chr11	98152821	98152821	AC	A	ENSMUST00000092735.11	1	ENSMUSG00000018160	FS	V/X	595	Med1	ENSMUST00000092735.11:c.1783del	ENSMUSP00000090411.5:p.Val595PhefsTer7	H-2-Kb	9	7	5	LEFMFFFSF	LEFMVFFFF	SMM	152.093	1559.948	10.257	64	0.312	326.93	3466.529	10.603	5373.11	500.31	11273.5	2074.9	1559.947563	152.0932709	1337.365144	153.5500634	DC1640T8	2.157142857	2.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.297	64	42	5	0.119047619	11qD	chr11-69590981-121956809	4	2	2	0.769	4.12199525	NA	2	1	sgMsh2	autochthonous
chr1	133272386	133272386	TA	T	ENSMUST00000038295.14	1	ENSMUSG00000041757	FS	V/X	234	Plekha6	ENSMUST00000038295.14:c.705del	ENSMUSP00000048214.8:p.Ala236ProfsTer80	H-2-Kb	9	74	0	GAFHHVLTL	NA	NetMHCpan	175.8	NA	NA	40	0.2	304.175	NA	NA	NA	520.61	NA	175.8	NA	328.9349344	NA	279.4151821	DC1640T8	1.071428571	1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.209	40	24	0	0	1qE4	chr1-4867294-195062457	4	2	2	0.769	4.12199525	NA	1	1	sgMsh2	autochthonous
chr1	165539831	165539831	A	G	ENSMUST00000027852.14	1	ENSMUSG00000026567	missense	T/A	557	Adcy10	ENSMUST00000027852.14:c.1669A>G	ENSMUSP00000027852.8:p.Thr557Ala	H-2-Db	9	4	8	SFHQNFYAI	SFHQNFYTI	SMM	105.104	62.176	0.592	196	0.199	167.108	96.911	0.58	73.99	141.21	379.5	647.3	62.17560216	105.1041828	119.8312253	193.0056399	M1_p20	-0.342857143	-0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.201	196	0	0	NA	1qH2.3	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	0.9386471	sgMsh2	cell line
chr1	85579187	85579187	CT	C	ENSMUST00000093508.6	1	ENSMUSG00000070034	FS	K/X	385	Sp110	ENSMUST00000093508.6:c.1154del	ENSMUSP00000091226.6:p.Lys385SerfsTer13	H-2-Db	9	11	1	SAFRMRQEI	NA	SMMPMBEC	212.114	NA	NA	57	0.123	246.936	NA	NA	NA	356.88	NA	263.4	NA	230.4729708	NA	212.1143253	M1_p20	-0.971428571	-0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.127	57	0	0	NA	1qC5	chr1-85027661-85662926	7.48560055	5.48560055	2	0.9	4.202897461	NA	1	0.593075531	sgMsh2	cell line
chr1	127412243	127412243	G	T	ENSMUST00000038361.10	1	ENSMUSG00000036155	missense	V/L	454	Mgat5	ENSMUST00000038361.10:c.1360G>T	ENSMUSP00000038359.4:p.Val454Leu	H-2-Kb	8	4	8	QSLVYGKL	QSLVYGKV	NetMHC	15.26	75.8	4.967	146	0.219	52.362	246.565	4.709	75.8	15.26	265.7	39.6	232.6697911	65.12383991	260.4593785	71.90183929	M1_p20	0.771428571	0.771428571	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	146	0	0	NA	1qE3	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr1	128364313	128364313	A	G	ENSMUST00000027602.14	1	ENSMUSG00000026356	missense	V/A	476	Dars	ENSMUST00000027602.14:c.1427T>C	ENSMUSP00000027602.8:p.Val476Ala	H-2-Kb	8	11	1	ATMLFLGL	VTMLFLGL	NetMHCpan	13.4	5.5	0.41	119	0.168	28.635	8.869	0.31	5.27	15.32	5.5	13.4	14.47904774	54.54312289	12.23883275	41.95077612	M1_p20	2.142857143	2.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.182	119	0	0	NA	1qE3	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	0.849919264	sgMsh2	cell line
chr1	26687303	26687303	T	A	ENSMUST00000097801.3	1	ENSMUSG00000073722	missense	I/L	42	4931408C20Rik	ENSMUST00000097801.3:c.124A>T	ENSMUSP00000095410.3:p.Ile42Leu	H-2-Kb	8	4	8	VGLFYLLL	VGLFYLLI	NetMHCpan	13.7	64.2	4.686	597	0.025	26.691	183.161	6.862	223.23	25.73	64.2	13.7	179.3659491	27.6528565	186.956255	32.564169	M1_p20	2.328571429	2.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.023	597	0	0	NA	1qA5	chr1-3216742-84929848	4	2	2	0.9	4.202897461	NA	1	0.10740738	sgMsh2	cell line
chr1	84912361	84912361	C	A	ENSMUST00000027422.6	1	ENSMUSG00000026220	missense	A/S	408	Slc16a14	ENSMUST00000027422.6:c.1222G>T	ENSMUSP00000027422.5:p.Ala408Ser	H-2-Kb	8	6	6	LMHTYSSL	LMHTYASL	NetMHC	32.78	13.28	0.405	124	0.153	74.006	33.853	0.457	13.28	32.78	20.2	35.1	63.64144033	143.7937467	47.50507412	112.911974	M1_p20	-0.157142857	-0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.154	124	0	0	NA	1qC5	chr1-3216742-84929848	4	2	2	0.9	4.202897461	NA	1	0.719162454	sgMsh2	cell line
chr1	152855898	152855898	T	C	ENSMUST00000043560.14	1	ENSMUSG00000042772	missense	R/G	379	Smg7	ENSMUST00000043560.14:c.1135A>G	ENSMUSP00000041241.8:p.Arg379Gly	H-2-Kb	8	5	7	VSMDWLGL	VSMDWLRL	NetMHCpan	34.7	24.7	0.712	252	0.266	70.049	45.03	0.643	38.45	50.82	24.7	34.7	69.30107956	116.611129	51.61072977	89.27708467	M1_p20	0.557142857	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.268	252	0	0	NA	1qG3	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr1	132014588	132014588	A	G	ENSMUST00000086556.11	1	ENSMUSG00000026436	missense	Y/C	66	Elk4	ENSMUST00000086556.11:c.197A>G	ENSMUSP00000083743.5:p.Tyr66Cys	H-2-Kb	8	6	6	RALRYCYV	RALRYYYV	NetMHC	53.18	33.42	0.628	58	0.19	95.601	68.626	0.718	33.42	53.18	49.2	71.6	88.05215715	119.6024291	102.2680559	132.3548926	M1_p20	0.742857143	0.742857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.206	58	0	0	NA	1qE4	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	0.96199653	sgMsh2	cell line
chr1	58595689	58595689	A	T	ENSMUST00000027193.8	1	ENSMUSG00000026032	missense	I/F	67	Ndufb3	ENSMUST00000027193.8:c.199A>T	ENSMUSP00000027193.8:p.Ile67Phe	H-2-Kb	8	9	3	GNFTFPSV	GNITFPSV	NetMHCpan	49.1	289.6	5.898	102	0.157	107.5	583.368	5.427	915.1	105.67	289.6	49.1	648.2462304	133.5795574	518.4895408	109.3301641	M1_p20	0.457142857	0.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.157	102	0	0	NA	1qC1.3	chr1-3216742-84929848	4	2	2	0.9	4.202897461	NA	1	0.733172113	sgMsh2	cell line
chr1	46123770	46123770	A	C	ENSMUST00000069293.9	5	ENSMUSG00000041144	missense	Q/H	425	Dnah7b	ENSMUST00000069293.9:c.1275A>C	ENSMUSP00000068738.7:p.Gln425His	H-2-Kb	8	9	3	SMHDFTDL	SMQDFTDL	NetMHCpan	98.5	275.1	2.793	539	0.219	215.13	310.019	1.441	223.63	129.14	275.1	98.5	344.9371732	301.1202761	453.6699358	309.5565516	M1_p20	-0.342857143	-0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.221	539	0	0	NA	1qC1.1	chr1-3216742-84929848	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr1	172279394	172279394	AG	A	ENSMUST00000085913.10	1	ENSMUSG00000007097	FS	P/X	786	Atp1a2	ENSMUST00000085913.10:c.2358del	ENSMUSP00000083077.4:p.Phe787SerfsTer16	H-2-Kb	8	19	0	TSPFHWAL	NA	NetMHCpan	85.5	NA	NA	165	0.2	177.212	NA	NA	NA	185.87	NA	85.5	NA	168.5543635	NA	242.5157786	M1_p20	0.271428571	0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.209	165	0	0	NA	1qH3	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	0.976006188	sgMsh2	cell line
chr1	151351713	151351713	T	C	ENSMUST00000023918.12	1	ENSMUSG00000023150	missense	Y/H	91	Ivns1abp	ENSMUST00000023918.12:c.271T>C	ENSMUSP00000023918.6:p.Tyr91His	H-2-Kb	8	5	7	VLLNYAHT	VLLNYAYT	SMMPMBEC	192.637	198.034	1.028	261	0.272	277.822	339.303	1.221	371.18	233.73	1146.3	1299.8	307.4255792	321.9141004	198.0341096	192.6371303	M1_p20	0.1	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.27	261	0	0	NA	1qG1	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr1	59199042	59199042	T	C	ENSMUST00000027178.12	1	ENSMUSG00000026024	missense	I/M	710	Als2	ENSMUST00000027178.12:c.2130A>G	ENSMUSP00000027178.6:p.Ile710Met	H-2-Kb	8	8	4	KSQMLRPL	KSQILRPL	NetMHC	256.26	392.88	1.533	143	0.273	266.552	345.964	1.298	392.88	256.26	972.8	779.2	247.5939338	270.2340064	299.0473787	262.8693795	M1_p20	-0.128571429	-0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.278	143	0	0	NA	1qC1.3	chr1-3216742-84929848	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr1	161241748	161241748	AT	A	ENSMUST00000071718.11	1	ENSMUSG00000026701	FS	K/X	216	Prdx6	ENSMUST00000071718.11:c.648del	ENSMUSP00000071636.5:p.Lys216AsnfsTer46	H-2-Kb	8	12	0	TSVIHPSL	NA	NetMHCpan	142.9	NA	NA	117	0.145	184.108	NA	NA	NA	256.58	NA	142.9	NA	176.9049561	NA	191.3110256	M1_p20	0.871428571	0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.13	117	0	0	NA	1qH2.1	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	0.607085189	sgMsh2	cell line
chr1	161241748	161241748	AT	A	ENSMUST00000071718.11	1	ENSMUSG00000026701	FS	K/X	216	Prdx6	ENSMUST00000071718.11:c.648del	ENSMUSP00000071636.5:p.Lys216AsnfsTer46	H-2-Kb	8	31	0	IQYWGLRM	NA	NetMHCpan	123.5	NA	NA	117	0.145	384.003	NA	NA	NA	358.99	NA	123.5	NA	476.1458462	NA	409.0157201	M1_p20	-0.7	-0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.13	117	0	0	NA	1qH2.1	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	0.607085189	sgMsh2	cell line
chr1	19231030	19231030	G	T	ENSMUST00000027059.10	1	ENSMUSG00000025927	missense	A/S	320	Tfap2b	ENSMUST00000027059.10:c.958G>T	ENSMUSP00000027059.4:p.Ala320Ser	H-2-Kb	8	10	2	LSRDFGYI	LARDFGYI	NetMHCpan	265.7	500.5	1.884	82	0.22	365.934	951.903	2.601	1043.06	388.71	500.5	265.7	990.238939	386.1357391	913.5661511	345.7323355	M1_p20	-0.457142857	-0.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.24	82	0	0	NA	1qA3	chr1-3216742-84929848	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr1	154633618	154633618	A	G	ENSMUST00000187541.6	1	ENSMUSG00000004110	missense	L/P	297	Cacna1e	ENSMUST00000187541.6:c.890T>C	ENSMUSP00000140937.1:p.Leu297Pro	H-2-Kb	8	8	4	DNIPFAVL	DNILFAVL	SMM	178.131	93.485	0.525	209	0.244	412.973	165.678	0.401	220.76	608.34	374.2	572	93.48458404	178.1312026	110.5961477	253.9451951	M1_p20	1.714285714	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.262	209	0	0	NA	1qG3	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr1	161241748	161241748	AT	A	ENSMUST00000071718.11	1	ENSMUSG00000026701	FS	K/X	216	Prdx6	ENSMUST00000071718.11:c.648del	ENSMUSP00000071636.5:p.Lys216AsnfsTer46	H-2-Kb	8	29	0	LHIQYWGL	NA	SMMPMBEC	213.668	NA	NA	117	0.145	293.427	NA	NA	NA	918.75	NA	362.6	NA	224.2538976	NA	213.6682534	M1_p20	-0.142857143	-0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.13	117	0	0	NA	1qH2.1	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	0.607085189	sgMsh2	cell line
chr1	151351713	151351713	T	C	ENSMUST00000023918.12	1	ENSMUSG00000023150	missense	Y/H	91	Ivns1abp	ENSMUST00000023918.12:c.271T>C	ENSMUSP00000023918.6:p.Tyr91His	H-2-Kb	9	7	5	LNYAHTAQL	LNYAYTAQL	NetMHCpan	10.4	5.2	0.5	261	0.272	31.415	21.341	0.679	6.52	17.41	5.2	10.4	48.31811688	60.27122243	36.16179668	45.42030017	M1_p20	-0.185714286	-0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.27	261	0	0	NA	1qG1	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr1	46123770	46123770	A	C	ENSMUST00000069293.9	5	ENSMUSG00000041144	missense	Q/H	425	Dnah7b	ENSMUST00000069293.9:c.1275A>C	ENSMUSP00000068738.7:p.Gln425His	H-2-Kb	9	8	4	VSMHDFTDL	VSMQDFTDL	NetMHCpan	139.1	150.5	1.082	539	0.219	189.106	200.755	1.062	163.69	179.03	150.5	139.1	376.7992242	312.6871254	237.82089	199.1819593	M1_p20	-0.342857143	0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.221	539	0	0	NA	1qC1.1	chr1-3216742-84929848	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr1	128364313	128364313	A	G	ENSMUST00000027602.14	1	ENSMUSG00000026356	missense	V/A	476	Dars	ENSMUST00000027602.14:c.1427T>C	ENSMUSP00000027602.8:p.Val476Ala	H-2-Kb	9	6	6	IGLERATML	IGLERVTML	NetMHCpan	169.6	134.8	0.795	119	0.168	303	226.99	0.749	136.11	195.56	134.8	169.6	457.2039776	492.1641774	317.8703353	410.4403034	M1_p20	0.371428571	0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.182	119	0	0	NA	1qE3	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	0.849919264	sgMsh2	cell line
chr1	85579187	85579187	CT	C	ENSMUST00000093508.6	1	ENSMUSG00000070034	FS	K/X	385	Sp110	ENSMUST00000093508.6:c.1154del	ENSMUSP00000091226.6:p.Lys385SerfsTer13	H-2-Kb	9	11	1	SAFRMRQEI	NA	NetMHC	222.54	NA	NA	57	0.123	380.963	NA	NA	NA	222.54	NA	325.3	NA	436.6264089	NA	527.5334467	M1_p20	-0.971428571	-0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.127	57	0	0	NA	1qC5	chr1-85027661-85662926	7.48560055	5.48560055	2	0.9	4.202897461	NA	1	0.593075531	sgMsh2	cell line
chr1	172279394	172279394	AG	A	ENSMUST00000085913.10	1	ENSMUSG00000007097	FS	P/X	786	Atp1a2	ENSMUST00000085913.10:c.2358del	ENSMUSP00000083077.4:p.Phe787SerfsTer16	H-2-Kb	9	9	4	ITPSCCSSL	NA	NetMHC	256.79	NA	NA	165	0.2	496.451	NA	NA	NA	256.79	NA	338.1	NA	654.8020042	NA	713.2634994	M1_p20	0.685714286	0.8	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;Vardict	3	0.209	165	0	0	NA	1qH3	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	0.976006188	sgMsh2	cell line
chr1	74919233	74919233	A	G	ENSMUST00000094844.3	1	ENSMUSG00000047021	missense	V/A	905	Cfap65	ENSMUST00000094844.3:c.2714T>C	ENSMUSP00000092440.3:p.Val905Ala	H-2-Kb	9	9	3	ATAHYRIRL	ATVHYRIRL	NetMHCpan	274.9	140.7	0.512	128	0.234	381.627	257.937	0.676	144.98	285.45	140.7	274.9	471.0966327	523.7330732	370.8941642	477.8042407	M1_p20	-0.485714286	-0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	128	0	0	NA	1qC4	chr1-3216742-84929848	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr1	173270231	173270231	A	G	ENSMUST00000213420.1	5	ENSMUSG00000049605	missense	S/G	19	Olfr418	ENSMUST00000213420.1:c.55A>G	ENSMUSP00000150427.1:p.Ser19Gly	H-2-Kb	9	4	8	FVFQGFSGF	FVFQGFSSF	NetMHCpan	196.3	191.2	0.974	286	0.063	310.099	338.26	1.091	338.26	307.51	191.2	196.3	350.8407252	312.6871254	338.259498	332.8511027	M1_p20	0.471428571	1.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2	2	0.08	286	0	0	NA	1qH3	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	0.373590885	sgMsh2	cell line
chr1	26687303	26687303	T	A	ENSMUST00000097801.3	1	ENSMUSG00000073722	missense	I/L	42	4931408C20Rik	ENSMUST00000097801.3:c.124A>T	ENSMUSP00000095410.3:p.Ile42Leu	H-2-Kb	9	6	6	LFYLLLPFL	LFYLLIPFL	SMM	169.087	269.222	1.592	597	0.025	259.918	394.397	1.517	487.32	313.18	644.9	591.2	269.2216614	169.0869148	301.4740949	206.6569426	M1_p20	2.157142857	2.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.023	597	0	0	NA	1qA5	chr1-3216742-84929848	4	2	2	0.9	4.202897461	NA	1	0.10740738	sgMsh2	cell line
chr1	85642993	85642993	A	G	ENSMUST00000080204.10	1	ENSMUSG00000070031	missense	K/R	448	Sp140	ENSMUST00000080204.10:c.1343A>G	ENSMUSP00000079095.4:p.Lys448Arg	H-2-Kb	9	10	2	SRMPYYYYF	SKMPYYYYF	SMM	234.482	268.602	1.146	76	0.303	335.317	342.105	1.02	335.61	342.35	348.6	524.7	268.6024688	234.4822647	349.3413547	328.2842143	M1_p20	-0.3	-0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.294	76	0	0	NA	1qC5	chr1-85027661-85662926	7.48560055	5.48560055	2	0.9	4.202897461	NA	2	1	sgMsh2	cell line
chr1	46123770	46123770	A	C	ENSMUST00000069293.9	5	ENSMUSG00000041144	missense	Q/H	425	Dnah7b	ENSMUST00000069293.9:c.1275A>C	ENSMUSP00000068738.7:p.Gln425His	H-2-Kb	9	9	3	SMHDFTDLI	SMQDFTDLI	NetMHC	356.22	620.19	1.741	539	0.219	478.537	975.149	2.038	620.19	356.22	1982.2	795.9	822.4509375	404.6783774	1127.84651	552.3953321	M1_p20	0.028571429	0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.221	539	0	0	NA	1qC1.1	chr1-3216742-84929848	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr1	85642993	85642993	A	G	ENSMUST00000080204.10	1	ENSMUSG00000070031	missense	K/R	448	Sp140	ENSMUST00000080204.10:c.1343A>G	ENSMUSP00000079095.4:p.Lys448Arg	H-2-Kb	9	4	8	SESSFFSRM	SESSFFSKM	SMM	350.841	639.897	1.824	76	0.303	480.171	992.792	2.068	1226.57	457.71	1243.7	666.4	639.8968908	350.8407252	759.0143731	502.6318444	M1_p20	0.085714286	0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.294	76	0	0	NA	1qC5	chr1-85027661-85662926	7.48560055	5.48560055	2	0.9	4.202897461	NA	2	1	sgMsh2	cell line
chr1	127412243	127412243	G	T	ENSMUST00000038361.10	1	ENSMUSG00000036155	missense	V/L	454	Mgat5	ENSMUST00000038361.10:c.1360G>T	ENSMUSP00000038359.4:p.Val454Leu	H-2-Kb	9	6	6	LVYGKLDSF	LVYGKVDSF	SMM	278.042	542.138	1.95	146	0.219	372.202	726.824	1.953	911.51	463.7	1434.9	1078.9	542.1381881	278.0417415	480.0096849	280.704904	M1_p20	-0.471428571	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	146	0	0	NA	1qE3	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr1	150808584	150808584	C	A	ENSMUST00000074783.11	5	ENSMUSG00000066842	missense	G/C	412	Hmcn1	ENSMUST00000074783.11:c.1234G>T	ENSMUSP00000074340.5:p.Gly412Cys	H-2-Kb	9	5	7	TGYDKDCYL	TGYDKDGYL	SMMPMBEC	281.352	241.129	0.857	105	0.19	397.422	570.225	1.435	814.53	465.91	815.3	889.7	325.9192408	328.9349344	241.1293081	281.3519957	M1_p20	-1.028571429	-1.028571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	105	0	0	NA	1qG1	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	0.933977214	sgMsh2	cell line
chr1	26687303	26687303	T	A	ENSMUST00000097801.3	1	ENSMUSG00000073722	missense	I/L	42	4931408C20Rik	ENSMUST00000097801.3:c.124A>T	ENSMUSP00000095410.3:p.Ile42Leu	H-2-Kb	9	3	9	GVGLFYLLL	GVGLFYLLI	SMM	121.649	302.072	2.483	597	0.025	349.188	926.052	2.652	1511.5	551.06	4204.8	1276	302.0716724	121.6494081	340.6042008	147.3160278	M1_p20	2.328571429	2.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.023	597	0	0	NA	1qA5	chr1-3216742-84929848	4	2	2	0.9	4.202897461	NA	1	0.10740738	sgMsh2	cell line
chr10	68778643	68778643	T	C	ENSMUST00000080995.7	1	ENSMUSG00000060044	missense	L/P	296	Tmem26	ENSMUST00000080995.7:c.887T>C	ENSMUSP00000079789.6:p.Leu296Pro	H-2-Db	9	5	7	FAVKNSPVM	FAVKNSLVM	NetMHC	8.71	9.25	1.062	265	0.166	25.374	27.679	1.091	9.25	8.71	9.8	10.7	46.62512402	43.51309752	45.5585612	40.04700113	M1_p20	0.071428571	0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.172	265	0	0	NA	10qB5.3	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	0.803220404	sgMsh2	cell line
chr10	24244309	24244309	A	G	ENSMUST00000095784.2	1	ENSMUSG00000020000	missense	M/V	112	Moxd1	ENSMUST00000095784.2:c.334A>G	ENSMUSP00000093460.2:p.Met112Val	H-2-Db	9	9	3	YAVENSTHT	YAMENSTHT	NetMHC	73.96	39.04	0.528	339	0.251	278.875	128.413	0.46	39.04	73.96	85.6	282.6	197.0697656	337.7691648	171.2261138	275.1503059	M1_p20	-1.171428571	-0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.255	339	0	0	NA	10qA4	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr10	14128134	14128134	A	G	ENSMUST00000191138.6	1	ENSMUSG00000015501	missense	N/D	159	Hivep2	ENSMUST00000191138.6:c.475A>G	ENSMUSP00000140150.1:p.Asn159Asp	H-2-Db	9	5	7	KKISNLDPA	KKISNLNPA	NetMHC	212.8	804.67	3.781	80	0.275	283.493	769.228	2.713	804.67	212.8	2973.4	2048.4	667.7593842	260.3874209	733.7869774	306.5984818	M1_p20	0.1	0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.267	80	0	0	NA	10qA2	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr10	68778643	68778643	T	C	ENSMUST00000080995.7	1	ENSMUSG00000060044	missense	L/P	296	Tmem26	ENSMUST00000080995.7:c.887T>C	ENSMUSP00000079789.6:p.Leu296Pro	H-2-Db	11	5	7	FAVKNSPVMAL	FAVKNSLVMAL	NetMHCpan	139.4	136.7	0.981	265	0.166	479.924	423.713	0.883	274.55	315.59	136.7	139.4	572.8751711	644.2582669	2605.313561	2641.557083	M1_p20	0.828571429	0.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.172	265	0	0	NA	10qB5.3	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	0.803220404	sgMsh2	cell line
chr10	50754122	50754122	G	T	ENSMUST00000035606.9	5	ENSMUSG00000038774	missense	S/I	1769	Ascc3	ENSMUST00000035606.9:c.5306G>T	ENSMUSP00000036726.8:p.Ser1769Ile	H-2-Kb	8	8	4	MNPIYYSL	MNPSYYSL	NetMHC	10.83	12.27	1.133	250	0.224	32.613	36.465	1.118	12.27	10.83	28.9	21.7	44.02911945	43.52512229	62.62388407	64.23030732	M1_p20	-0.028571429	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.24	250	0	0	NA	10qB3	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr10	50707714	50707714	T	C	ENSMUST00000035606.9	5	ENSMUSG00000038774	missense	Y/H	920	Ascc3	ENSMUST00000035606.9:c.2758T>C	ENSMUSP00000036726.8:p.Tyr920His	H-2-Kb	8	11	1	HTYLYVRM	YTYLYVRM	NetMHC	13.99	6.77	0.484	317	0.23	22.284	11.786	0.529	6.77	13.99	8.2	14.8	16.50973111	38.70258739	15.37234066	29.76733808	M1_p20	0.3	0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.23	317	0	0	NA	10qB3	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr10	44441640	44441640	TG	T	ENSMUST00000105490.2	1	ENSMUSG00000038151	FS	H/X	396	Prdm1	ENSMUST00000105490.2:c.1186del	ENSMUSP00000101129.2:p.His396ThrfsTer29	H-2-Kb	8	15	0	LSFLLTML	NA	NetMHC	25.97	NA	NA	109	0.339	38.074	NA	NA	NA	25.97	NA	27.2	NA	55.81359543	NA	48.94856902	M1_p20	2.085714286	2.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.314	109	0	0	NA	10qB2	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr10	127170070	127170070	CT	C	ENSMUST00000006914.10	1	ENSMUSG00000006731	FS	F/X	302	B4galnt1	ENSMUST00000006914.10:c.907del	ENSMUSP00000006914.9:p.Tyr303ThrfsTer6	H-2-Kb	8	6	7	ASIRRFTL	ASIRRFYP	NetMHC	29	3440.11	118.624	251	0.267	210.968	4453.498	21.11	3440.11	29	1848.8	57.4	6176.465217	435.2512229	5466.885777	364.5356443	M1_p20	0.085714286	0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.256	251	0	0	NA	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr10	127507730	127507730	A	T	ENSMUST00000035839.2	1	ENSMUSG00000040287	missense	Y/F	247	Stac3	ENSMUST00000035839.2:c.740A>T	ENSMUSP00000048148.2:p.Tyr247Phe	H-2-Kb	8	8	4	QSHFFVAL	QSHYFVAL	NetMHCpan	21.8	26.6	1.22	77	0.13	43.547	46.774	1.074	19.76	38.37	26.6	21.8	66.94836882	48.72367077	80.48964279	63.34903447	M1_p20	1.628571429	1.628571429	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.149	77	0	0	NA	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	0.695813024	sgMsh2	cell line
chr10	50707714	50707714	T	C	ENSMUST00000035606.9	5	ENSMUSG00000038774	missense	Y/H	920	Ascc3	ENSMUST00000035606.9:c.2758T>C	ENSMUSP00000036726.8:p.Tyr920His	H-2-Kb	8	9	3	MSHTYLYV	MSYTYLYV	NetMHCpan	49.1	5.5	0.112	317	0.23	66.247	6.263	0.095	3.9	49.75	5.5	49.1	7.026515361	82.74466462	8.142166892	82.93541077	M1_p20	0.1	0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.23	317	0	0	NA	10qB3	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr10	81509375	81509375	A	G	ENSMUST00000043709.7	1	ENSMUSG00000034792	missense	W/R	219	Gna15	ENSMUST00000043709.7:c.655T>C	ENSMUSP00000049175.7:p.Trp219Arg	H-2-Kb	8	11	1	RIHCFENV	WIHCFENV	SMM	346.529	467.455	1.349	268	0.287	369.99	655.698	1.772	843.94	365.18	1509.8	374.8	467.4552051	346.5293309	451.5855118	392.4099402	M1_p20	0.542857143	0.542857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.284	268	0	0	NA	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr10	44441640	44441640	TG	T	ENSMUST00000105490.2	1	ENSMUSG00000038151	FS	H/X	396	Prdm1	ENSMUST00000105490.2:c.1186del	ENSMUSP00000101129.2:p.His396ThrfsTer29	H-2-Kb	8	11	1	TSHQLSFL	NA	SMMPMBEC	169.723	NA	NA	109	0.339	280.081	NA	NA	NA	384.07	NA	533.6	NA	176.0921516	NA	169.7227266	M1_p20	0.3	0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.314	109	0	0	NA	10qB2	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr10	76533574	76533574	T	C	ENSMUST00000048678.6	1	ENSMUSG00000033105	missense	V/A	82	Lss	ENSMUST00000048678.6:c.245T>C	ENSMUSP00000046856.6:p.Val82Ala	H-2-Kb	8	10	2	GATFYAKL	GVTFYAKL	NetMHCpan	140.1	129.9	0.927	110	0.264	394.062	293.67	0.745	254.88	428.59	129.9	140.1	497.4391928	489.4856902	332.4604589	359.5340277	M1_p20	0.614285714	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.289	110	0	0	NA	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr10	10719563	10719563	T	A	ENSMUST00000044306.12	1	ENSMUSG00000019828	missense	T/S	774	Grm1	ENSMUST00000044306.12:c.2320A>T	ENSMUSP00000037255.6:p.Thr774Ser	H-2-Kb	8	7	5	YAFKSRNV	YAFKTRNV	NetMHCpan	408.8	503.2	1.231	196	0.342	484.728	629.347	1.298	622.28	493.31	503.2	408.8	645.2678095	476.1458462	636.4144033	596.6779652	M1_p20	-0.557142857	-0.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.328	196	0	0	NA	10qA1	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	2	1	sgMsh2	cell line
chr10	80835604	80835604	A	G	ENSMUST00000053986.8	1	ENSMUSG00000051067	missense	I/T	164	Lingo3	ENSMUST00000053986.8:c.491T>C	ENSMUSP00000054960.7:p.Ile164Thr	H-2-Kb	9	11	1	TSRRAFAGL	ISRRAFAGL	NetMHC	9.44	4.68	0.496	24	0.208	154.642	85.248	0.551	4.68	9.44	17.7	47.4	152.7953016	261.8846237	182.9152858	302.8656361	M1_p20	0.114285714	0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.221	24	0	0	NA	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr10	76533574	76533574	T	C	ENSMUST00000048678.6	1	ENSMUSG00000033105	missense	V/A	82	Lss	ENSMUST00000048678.6:c.245T>C	ENSMUSP00000046856.6:p.Val82Ala	H-2-Kb	9	9	3	NGATFYAKL	NGVTFYAKL	NetMHCpan	39.1	21.6	0.552	110	0.264	250.937	182.7	0.728	25.58	64.1	21.6	39.1	497.86317	553.4902819	339.8208329	437.7740356	M1_p20	0.614285714	0.614285714	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.289	110	0	0	NA	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr10	26271888	26271888	T	C	ENSMUST00000060716.5	5	ENSMUSG00000051354	missense	L/P	487	Samd3	ENSMUST00000060716.5:c.1460T>C	ENSMUSP00000057805.5:p.Leu487Pro	H-2-Kb	9	6	6	QTFNFPETL	QTFNFLETL	NetMHC	70.68	27.41	0.388	109	0.183	201.184	82.234	0.409	27.41	70.68	32	90.4	132.4677013	311.967965	170.7064772	407.6148523	M1_p20	0.014285714	0.014285714	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.181	109	0	0	NA	10qA4	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	0.845249378	sgMsh2	cell line
chr10	50754122	50754122	G	T	ENSMUST00000035606.9	5	ENSMUSG00000038774	missense	S/I	1769	Ascc3	ENSMUST00000035606.9:c.5306G>T	ENSMUSP00000036726.8:p.Ser1769Ile	H-2-Kb	9	7	5	IMNPIYYSL	IMNPSYYSL	NetMHCpan	106.8	122.5	1.147	250	0.224	213.697	155.456	0.727	120.49	198.25	122.5	106.8	188.4126249	229.1447967	231.3396105	261.9690589	M1_p20	-0.028571429	0.457142857	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.24	250	0	0	NA	10qB3	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr10	79865469	79865469	A	G	ENSMUST00000092325.10	1	ENSMUSG00000035835	missense	V/A	513	Plppr3	ENSMUST00000092325.10:c.1538T>C	ENSMUSP00000089979.4:p.Val513Ala	H-2-Kb	9	10	2	SARAKWLSM	SVRAKWLSM	NetMHC	322.31	332.34	1.031	59	0.068	381.326	434.988	1.141	332.34	322.31	908.5	898.8	418.8996524	372.4860392	451.0762902	390.1665199	M1_p20	-0.371428571	-0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.104	59	0	0	NA	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	0.485668151	sgMsh2	cell line
chr10	50707714	50707714	T	C	ENSMUST00000035606.9	5	ENSMUSG00000038774	missense	Y/H	920	Ascc3	ENSMUST00000035606.9:c.2758T>C	ENSMUSP00000036726.8:p.Tyr920His	H-2-Kb	9	6	6	VRWMSHTYL	VRWMSYTYL	NetMHCpan	404.6	159.1	0.393	317	0.23	479.048	160.314	0.335	97.7	442.57	159.1	404.6	171.8343562	601.3260247	161.5288124	515.5253194	M1_p20	-0.171428571	-0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.23	317	0	0	NA	10qB3	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr10	23897365	23897365	T	C	ENSMUST00000041416.7	1	ENSMUSG00000037440	missense	Y/H	97	Vnn1	ENSMUST00000041416.7:c.289T>C	ENSMUSP00000040599.7:p.Tyr97His	H-2-Kb	9	7	5	TIYPHLEEI	TIYPYLEEI	NetMHCpan	162.8	59.8	0.367	93	0.215	280.695	187.481	0.668	155.05	490.72	59.8	162.8	228.6177783	285.1740477	219.9125427	276.216743	M1_p20	-0.685714286	-0.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.254	93	0	0	NA	10qA4	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr10	50707714	50707714	T	C	ENSMUST00000035606.9	5	ENSMUSG00000038774	missense	Y/H	920	Ascc3	ENSMUST00000035606.9:c.2758T>C	ENSMUSP00000036726.8:p.Tyr920His	H-2-Kb	9	10	2	SHTYLYVRM	SYTYLYVRM	NetMHCpan	397.2	490.1	1.234	317	0.23	434.19	409.192	0.942	575.2	504.03	490.1	397.2	313.4079437	434.6202928	328.2842143	433.7604991	M1_p20	0.3	0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.23	317	0	0	NA	10qB3	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr11	36008549	36008549	T	C	ENSMUST00000102801.7	5	ENSMUSG00000049336	missense	Y/C	2594	Tenm2	ENSMUST00000102801.7:c.7781A>G	ENSMUSP00000099865.1:p.Tyr2594Cys	H-2-Db	9	5	7	SVLNNACYL	SVLNNAYYL	NetMHCpan	29.4	22.1	0.752	239	0.151	58.079	41.36	0.712	16.41	35.69	22.1	29.4	60.62056782	80.46740575	79.53714539	98.30373071	M1_p20	0.514285714	0.642857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.152	239	0	0	NA	11qA4	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	0.709822682	sgMsh2	cell line
chr11	43556667	43556667	G	T	ENSMUST00000050574.6	1	ENSMUSG00000044707	missense	R/L	59	Ccnjl	ENSMUST00000050574.6:c.176G>T	ENSMUSP00000058111.6:p.Arg59Leu	H-2-Db	9	9	3	SALHLAIYL	SARHLAIYL	NetMHC	172.76	6022.1	34.858	78	0.372	214.407	4374.189	20.401	6022.1	172.76	8244.8	501.5	2082.667788	190.8182902	2726.277127	237.9961875	M1_p20	1.885714286	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.377	78	0	0	NA	11qB1.1	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	2	1	sgMsh2	cell line
chr11	58757857	58757857	G	A	ENSMUST00000215071.1	5	ENSMUSG00000107677	missense	S/N	64	Olfr316	ENSMUST00000215071.1:c.191G>A	ENSMUSP00000151136.1:p.Ser64Asn	H-2-Db	9	7	5	YFLLNQLSI	YFLLSQLSI	SMM	53.164	1078.003	20.277	817	0.1	141.124	3409.713	24.161	8143.16	200.67	5247	352.8	1078.003076	53.16428776	1572.425217	81.57742638	M1_p20	1.157142857	1.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.099	817	0	0	NA	11qB1.3	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	0.462318721	sgMsh2	cell line
chr10	129501829	129501829	T	C	ENSMUST00000218901.1	NA	ENSMUSG00000044025	missense	F/S	315	Olfr790	ENSMUST00000218901.1:c.944T>C	ENSMUSP00000151759.1:p.Phe315Ser	H-2-Kb	8	13	2	ISFSSKNL	IFFSSKNL	NetMHCpan	18.5	115.8	6.259	70	0.329	19.094	83.126	4.354	110.95	18.52	115.8	18.5	45.89231861	19.66708524	55.30189331	20.68902384	M1_p20	-0.457142857	-0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.333	70	0	0	NA	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	2	1	sgMsh2	cell line
chr10	129626025	129626025	A	G	ENSMUST00000204979.2	2	ENSMUSG00000095002	missense	L/P	12	Olfr798	ENSMUST00000204979.2:c.35T>C	ENSMUSP00000144716.1:p.Leu12Pro	H-2-Kb	8	5	7	SVSEFIPL	SVSEFILL	NetMHC	38.39	159.69	4.16	77	0.234	72.402	215.586	2.978	159.69	38.39	96.3	42.3	271.4813499	102.5038081	318.9627742	115.8083836	M1_p20	1.342857143	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.245	77	0	0	NA	10qD3	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	sgMsh2	cell line
chr11	69421776	69421776	G	A	ENSMUST00000108659.1	5	ENSMUSG00000005237	missense	T/I	4321	Dnah2	ENSMUST00000108659.1:c.12962C>T	ENSMUSP00000104299.1:p.Thr4321Ile	H-2-Kb	8	11	1	IGFLTAVL	TGFLTAVL	NetMHCpan	35.6	138.3	3.885	36	0.25	41.753	136.558	3.271	220.51	43.81	138.3	35.6	134.8155538	48.16593553	109.5821962	39.69538331	M1_p20	2.185714286	2.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.249	36	0	0	NA	11qB3	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr11	66094123	66094123	T	C	ENSMUST00000080665.9	5	ENSMUSG00000056752	missense	R/G	1207	Dnah9	ENSMUST00000080665.9:c.3619A>G	ENSMUSP00000079494.3:p.Arg1207Gly	H-2-Kb	8	10	2	VGQQVAPL	VRQQVAPL	SMM	66.182	315.312	4.764	143	0.259	74.627	1070.287	14.342	1743.62	66.89	2996.9	350.4	315.3116375	66.18201718	396.9538331	82.36448742	M1_p20	0.114285714	0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.247	143	0	0	NA	11qB3	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr11	78231811	78231811	GT	G	ENSMUST00000002121.4	1	ENSMUSG00000002052	FS	K/X	195	Supt6	ENSMUST00000002121.4:c.585del	ENSMUSP00000002121.4:p.Lys195AsnfsTer69	H-2-Kb	8	56	0	MSTRMMRL	NA	NetMHC	83.9	NA	NA	156	0.301	132.086	NA	NA	NA	83.9	NA	282.2	NA	120.7090967	NA	143.4630303	M1_p20	-0.414285714	-0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.299	156	0	0	NA	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr11	34688463	34688463	A	T	ENSMUST00000093193.11	1	ENSMUSG00000020143	missense	L/M	708	Dock2	ENSMUST00000093193.11:c.2122T>A	ENSMUSP00000090884.5:p.Leu708Met	H-2-Kb	8	9	3	ATMAYKKL	ATLAYKKL	NetMHCpan	62.7	80.7	1.287	471	0.268	117.441	94.582	0.805	84.03	96.29	80.7	62.7	118.7790917	204.0515979	105.1332282	138.5925865	M1_p20	-0.328571429	-0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.256	471	0	0	NA	11qA4	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr10	129754686	129754686	T	TA	ENSMUST00000213379.1	5	ENSMUSG00000050478	FS	-/X	254-255	Olfr807	ENSMUST00000213379.1:c.762dup	ENSMUSP00000149172.1:p.Met255TyrfsTer8	H-2-Kb	8	10	3	IFYVHQTF	NA	NetMHC	148.45	NA	NA	187	0.262	217.009	NA	NA	NA	148.45	NA	182.4	NA	251.6170116	NA	275.2580317	M1_p20	0.157142857	0.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.238	187	0	0	NA	10qD3	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	sgMsh2	cell line
chr11	78231811	78231811	GT	G	ENSMUST00000002121.4	1	ENSMUSG00000002052	FS	K/X	195	Supt6	ENSMUST00000002121.4:c.585del	ENSMUSP00000002121.4:p.Lys195AsnfsTer69	H-2-Kb	8	35	0	WTLTMMNL	NA	SMM	143.133	NA	NA	156	0.301	152.936	NA	NA	NA	158.39	NA	451.7	NA	143.1330745	NA	147.4823333	M1_p20	0.928571429	0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.299	156	0	0	NA	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr11	58757857	58757857	G	A	ENSMUST00000215071.1	5	ENSMUSG00000107677	missense	S/N	64	Olfr316	ENSMUST00000215071.1:c.191G>A	ENSMUSP00000151136.1:p.Ser64Asn	H-2-Kb	8	6	6	MYFLLNQL	MYFLLSQL	NetMHCpan	183.7	77.4	0.421	817	0.1	238.921	133.441	0.559	129.56	253.53	77.4	183.7	148.8469706	240.8463117	137.3219621	236.9954455	M1_p20	0.842857143	0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.099	817	0	0	NA	11qB1.3	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	0.462318721	sgMsh2	cell line
chr11	24049338	24049338	T	C	ENSMUST00000068360.1	1	ENSMUSG00000055010	missense	N/S	86	A830031A19Rik	ENSMUST00000068360.1:c.257A>G	ENSMUSP00000063283.1:p.Asn86Ser	H-2-Kb	8	11	1	SIMVVTTL	NIMVVTTL	NetMHCpan	201.2	1858.9	9.239	267	0.307	334.243	2516.896	7.53	6500.35	268.78	1858.9	201.2	2765.28565	435.2512229	2268.506354	399.7053856	M1_p20	2.457142857	2.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.294	267	0	0	NA	11qA3.2	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr11	72058021	72058021	G	A	ENSMUST00000075258.12	1	ENSMUSG00000040543	missense	R/W	769	Pitpnm3	ENSMUST00000075258.12:c.2305C>T	ENSMUSP00000074737.6:p.Arg769Trp	H-2-Kb	8	9	3	VVWHWQDL	VVRHWQDL	NetMHCpan	164	1200.7	7.321	153	0.176	222.002	907.754	4.089	1202.31	270.69	1200.7	164	614.8086937	260.4593785	592.570463	183.5439188	M1_p20	-0.571428571	-0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.177	153	0	0	NA	11qB4	chr11-69590981-82929860	4	3	1	0.9	4.202897461	NA	1	0.826569834	sgMsh2	cell line
chr11	51048574	51048574	C	A	ENSMUST00000073543.1	NA	ENSMUSG00000057890	missense	L/I	156	Olfr1375	ENSMUST00000073543.1:c.466C>A	ENSMUSP00000144756.1:p.Leu156Ile	H-2-Kb	8	4	8	VVWMCSAI	VVWMCSAL	NetMHCpan	187.8	52.2	0.278	544	0.263	304.068	53.059	0.174	38.05	298.58	52.2	187.8	83.70280268	542.9252	53.91877292	309.5565516	M1_p20	1.885714286	1.885714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.262	544	0	0	NA	11qB1.3	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr11	57528173	57528173	A	T	ENSMUST00000020830.13	1	ENSMUSG00000020522	missense	D/V	53	Mfap3	ENSMUST00000020830.13:c.158A>T	ENSMUSP00000020830.7:p.Asp53Val	H-2-Kb	8	4	8	SAGSYSGV	SAGSYSGD	NetMHC	397.02	22519.42	56.721	157	0.242	446.118	12796.838	28.685	22519.42	397.02	29869.5	1113.8	3074.255792	459.9811133	2458.895091	432.2549746	M1_p20	0.328571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.236	157	0	0	NA	11qB1.3	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr10	130472110	130472110	CA	C	ENSMUST00000164227.3	5	ENSMUSG00000091511	FS	L/X	753	Vmn2r87	ENSMUST00000164227.3:c.2258del	ENSMUSP00000129215.2:p.Leu753TrpfsTer25	H-2-Kb	8	15	0	ASLWLSWL	NA	SMM	312.421	NA	NA	465	0.234	407.641	NA	NA	NA	717.62	NA	457.4	NA	312.4208431	NA	357.8821189	M1_p20	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.237	465	0	0	NA	10qD3	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	sgMsh2	cell line
chr11	69421776	69421776	G	A	ENSMUST00000108659.1	5	ENSMUSG00000005237	missense	T/I	4321	Dnah2	ENSMUST00000108659.1:c.12962C>T	ENSMUSP00000104299.1:p.Thr4321Ile	H-2-Kb	8	7	5	FTFPIGFL	FTFPTGFL	NetMHCpan	171.4	290.1	1.693	36	0.25	310.633	287.844	0.927	911.4	769.54	290.1	171.4	255.1173529	312.4208431	285.5880296	308.8445912	M1_p20	1.6	1.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.249	36	0	0	NA	11qB3	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr10	130472110	130472110	CA	C	ENSMUST00000164227.3	5	ENSMUSG00000091511	FS	L/X	753	Vmn2r87	ENSMUST00000164227.3:c.2258del	ENSMUSP00000129215.2:p.Leu753TrpfsTer25	H-2-Kb	8	19	0	LSWLGTFL	NA	SMMPMBEC	307.426	NA	NA	465	0.234	420.694	NA	NA	NA	1101.66	NA	318.1	NA	523.2870654	NA	307.4255792	M1_p20	1.085714286	1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.237	465	0	0	NA	10qD3	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	sgMsh2	cell line
chr11	34688463	34688463	A	T	ENSMUST00000093193.11	1	ENSMUSG00000020143	missense	L/M	708	Dock2	ENSMUST00000093193.11:c.2122T>A	ENSMUSP00000090884.5:p.Leu708Met	H-2-Kb	9	11	1	MAYKKLMTV	LAYKKLMTV	NetMHCpan	53.3	93.4	1.752	471	0.268	111.459	136.253	1.222	92.9	63.29	93.4	53.3	179.1059444	159.628341	191.9773533	191.9773533	M1_p20	0.014285714	0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.256	471	0	0	NA	11qA4	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr10	129626025	129626025	A	G	ENSMUST00000204979.2	2	ENSMUSG00000095002	missense	L/P	12	Olfr798	ENSMUST00000204979.2:c.35T>C	ENSMUSP00000144716.1:p.Leu12Pro	H-2-Kb	9	4	8	TSVSEFIPL	TSVSEFILL	NetMHC	66.41	157	2.364	77	0.234	133.399	221.183	1.658	157	66.41	211.1	85.2	231.2650474	181.5975563	301.4740949	216.3963843	M1_p20	1.342857143	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.245	77	0	0	NA	10qD3	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	sgMsh2	cell line
chr11	69421776	69421776	G	A	ENSMUST00000108659.1	5	ENSMUSG00000005237	missense	T/I	4321	Dnah2	ENSMUST00000108659.1:c.12962C>T	ENSMUSP00000104299.1:p.Thr4321Ile	H-2-Kb	9	5	7	SGFTFPIGF	SGFTFPTGF	NetMHCpan	69.2	48.4	0.699	36	0.25	218.951	188.454	0.861	55.46	98.19	48.4	69.2	321.4474612	339.7113053	378.6604965	416.1500968	M1_p20	1.457142857	1.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.249	36	0	0	NA	11qB3	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr11	34688463	34688463	A	T	ENSMUST00000093193.11	1	ENSMUSG00000020143	missense	L/M	708	Dock2	ENSMUST00000093193.11:c.2122T>A	ENSMUSP00000090884.5:p.Leu708Met	H-2-Kb	9	3	9	IQQHFSATM	IQQHFSATL	NetMHC	108.3	43.99	0.406	471	0.268	432.806	302.966	0.7	43.99	108.3	87	183.1	518.9314595	682.5115418	629.8686601	853.5913393	M1_p20	-0.242857143	-0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.256	471	0	0	NA	11qA4	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr11	67211360	67211360	C	A	ENSMUST00000124516.7	1	ENSMUSG00000056328	missense	R/S	826	Myh1	ENSMUST00000124516.7:c.2476C>A	ENSMUSP00000117569.1:p.Arg826Ser	H-2-Kb	9	6	6	IQYNVSAFM	IQYNVRAFM	NetMHC	125.35	144.71	1.154	390	0.164	385.659	420.869	1.091	144.71	125.35	131.9	140.2	830.0609824	631.1171763	697.02764	656.5230826	M1_p20	0.728571429	0.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.184	390	0	0	NA	11qB3	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	0.859259037	sgMsh2	cell line
chr11	61546578	61546578	A	C	ENSMUST00000179936.7	1	ENSMUSG00000001036	missense	I/S	56	Epn2	ENSMUST00000179936.7:c.167T>G	ENSMUSP00000136950.1:p.Ile56Ser	H-2-Kb	9	6	6	VAFSESMSM	VAFSEIMSM	NetMHCpan	123.9	82.3	0.664	148	0.291	145.532	154.465	1.061	140.62	155.51	82.3	123.9	168.310031	135.5532704	254.8296748	263.7849417	M1_p20	0.1	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.284	148	0	0	NA	11qB2	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr11	78231811	78231811	GT	G	ENSMUST00000002121.4	1	ENSMUSG00000002052	FS	K/X	195	Supt6	ENSMUST00000002121.4:c.585del	ENSMUSP00000002121.4:p.Lys195AsnfsTer69	H-2-Kb	9	34	0	VWTLTMMNL	NA	NetMHC	164.95	NA	NA	156	0.301	361.68	NA	NA	NA	164.95	NA	440.8	NA	282.5595563	NA	561.3710342	M1_p20	0.928571429	1.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.299	156	0	0	NA	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr11	87035223	87035223	T	C	ENSMUST00000020804.7	1	ENSMUSG00000061666	missense	T/A	299	Gdpd1	ENSMUST00000020804.7:c.895A>G	ENSMUSP00000020804.7:p.Thr299Ala	H-2-Kb	9	9	3	VMADYPTKL	VMTDYPTKL	NetMHCpan	134	233	1.739	77	0.273	178.725	248.628	1.391	288.51	222.06	233	134	258.8868552	177.8729877	238.3691237	179.5767056	M1_p20	-0.771428571	0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.294	77	0	0	NA	11qC	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr11	78231811	78231811	GT	G	ENSMUST00000002121.4	1	ENSMUSG00000002052	FS	K/X	195	Supt6	ENSMUST00000002121.4:c.585del	ENSMUSP00000002121.4:p.Lys195AsnfsTer69	H-2-Kb	9	55	0	TMSTRMMRL	NA	NetMHC	228.1	NA	NA	156	0.301	272.039	NA	NA	NA	228.1	NA	293.9	NA	347.6241981	NA	250.1785091	M1_p20	-0.414285714	-0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.299	156	0	0	NA	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr10	130472110	130472110	CA	C	ENSMUST00000164227.3	5	ENSMUSG00000091511	FS	L/X	753	Vmn2r87	ENSMUST00000164227.3:c.2258del	ENSMUSP00000129215.2:p.Leu753TrpfsTer25	H-2-Kb	9	9	3	GSWLWGASL	NA	NetMHCpan	270.2	NA	NA	465	0.234	374.862	NA	NA	NA	300.72	NA	270.2	NA	563.7804345	NA	449.0037829	M1_p20	0.914285714	0.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.237	465	0	0	NA	10qD3	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	sgMsh2	cell line
chr11	51048574	51048574	C	A	ENSMUST00000073543.1	NA	ENSMUSG00000057890	missense	L/I	156	Olfr1375	ENSMUST00000073543.1:c.466C>A	ENSMUSP00000144756.1:p.Leu156Ile	H-2-Kb	9	11	1	IISLMHTLL	LISLMHTLL	NetMHCpan	293.7	1169	3.98	544	0.263	394.034	1006.41	2.554	1480.07	359.41	1169	293.7	837.7414421	428.6570788	843.82036	431.7675507	M1_p20	1.228571429	1.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.262	544	0	0	NA	11qB1.3	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr11	51048574	51048574	C	A	ENSMUST00000073543.1	NA	ENSMUSG00000057890	missense	L/I	156	Olfr1375	ENSMUST00000073543.1:c.466C>A	ENSMUSP00000144756.1:p.Leu156Ile	H-2-Kb	9	4	8	VVWMCSAII	VVWMCSALI	NetMHC	394.75	138.82	0.352	544	0.263	461.509	296.958	0.643	138.82	394.75	352.1	642.1	294.5167504	461.4344339	299.3987618	461.5832068	M1_p20	1.928571429	1.928571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.262	544	0	0	NA	11qB1.3	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr11	58757857	58757857	G	A	ENSMUST00000215071.1	5	ENSMUSG00000107677	missense	S/N	64	Olfr316	ENSMUST00000215071.1:c.191G>A	ENSMUSP00000151136.1:p.Ser64Asn	H-2-Kb	9	5	7	PMYFLLNQL	PMYFLLSQL	SMM	69.841	60.969	0.873	817	0.1	256.406	183.625	0.716	298.82	430.35	478.1	884.5	60.9691303	69.84092778	68.43054518	82.46126636	M1_p20	0.842857143	0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.099	817	0	0	NA	11qB1.3	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	0.462318721	sgMsh2	cell line
chr10	130472110	130472110	CA	C	ENSMUST00000164227.3	5	ENSMUSG00000091511	FS	L/X	753	Vmn2r87	ENSMUST00000164227.3:c.2258del	ENSMUSP00000129215.2:p.Leu753TrpfsTer25	H-2-Kb	9	17	0	LWLSWLGTF	NA	SMM	245.533	NA	NA	465	0.234	456.634	NA	NA	NA	499.03	NA	2307.2	NA	245.5330734	NA	414.2380608	M1_p20	1.085714286	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.237	465	0	0	NA	10qD3	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	sgMsh2	cell line
chr11	69421776	69421776	G	A	ENSMUST00000108659.1	5	ENSMUSG00000005237	missense	T/I	4321	Dnah2	ENSMUST00000108659.1:c.12962C>T	ENSMUSP00000104299.1:p.Thr4321Ile	H-2-Kb	10	5	7	SGFTFPIGFL	SGFTFPTGFL	NetMHCpan	63.6	53.8	0.846	36	0.25	481.331	442.536	0.919	112.64	190.23	53.8	63.6	925.4010757	929.672533	772.4315424	772.4315424	M1_p20	1.6	1.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.249	36	0	0	NA	11qB3	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr12	69190025	69190025	GT	G	ENSMUST00000021356.5	1	ENSMUSG00000020973	FS	T/X	770	Dnaaf2	ENSMUST00000021356.5:c.2308del	ENSMUSP00000021356.5:p.Thr770LeufsTer12	H-2-Db	9	5	7	SSLLNKLWF	SSLLNKTVV	NetMHC	102.74	8.12	0.079	520	0.221	148.467	27.724	0.187	8.12	102.74	17.2	273.1	38.24899249	138.2356312	40.41755147	158.6974688	M1_p20	0.842857143	0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.214	520	0	0	NA	12qC2	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.999355619	sgMsh2	cell line
chr11	95969851	95969851	T	G	ENSMUST00000013559.2	1	ENSMUSG00000013415	missense	S/R	359	Igf2bp1	ENSMUST00000013559.2:c.1075A>C	ENSMUSP00000013559.2:p.Ser359Arg	H-2-Db	9	8	4	AAMRLQSHL	AAMSLQSHL	SMM	336.217	330.842	0.984	176	0.273	466.447	489.283	1.049	583.59	561.66	681.7	531.5	330.8415143	336.2172565	394.9753567	401.39319	M1_p20	-0.357142857	0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.27	176	0	0	NA	11qD	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr11	110158302	110158302	T	TA	ENSMUST00000044850.3	1	ENSMUSG00000041797	FS	-/X	226-227	Abca9	ENSMUST00000044850.3:c.678dup	ENSMUSP00000036338.3:p.Ile227TyrfsTer140	H-2-Kb	8	114	0	VSYWLGYL	NA	NetMHC	3.31	NA	NA	78	0.192	5.817	NA	NA	NA	3.31	NA	5.3	NA	6.334903447	NA	7.477217263	M1_p20	0.414285714	0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.227	78	0	0	NA	11qE1	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr12	32848661	32848661	CA	C	ENSMUST00000020886.8	1	ENSMUSG00000020572	FS	S/X	425	Nampt	ENSMUST00000020886.8:c.1280del	ENSMUSP00000020886.7:p.Lys427ArgfsTer41	H-2-Kb	8	43	0	FSIRFSRM	NA	NetMHC	5.62	NA	NA	103	0.184	18.487	NA	NA	NA	5.62	NA	13	NA	25.86663888	NA	23.97397234	M1_p20	-0.2	-0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.179	103	0	0	NA	12qA3	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.835909606	sgMsh2	cell line
chr12	73285203	73285203	T	C	ENSMUST00000116420.3	1	ENSMUSG00000034442	missense	I/M	26	Trmt5	ENSMUST00000116420.3:c.78A>G	ENSMUSP00000112121.2:p.Ile26Met	H-2-Kb	8	10	2	SMLLFTLV	SILLFTLV	NetMHC	24.77	21.25	0.858	375	0.163	78.897	61.312	0.777	21.25	24.77	60	44.1	62.62388407	113.6946424	72.73442335	125.5278239	M1_p20	2.8	2.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.171	375	0	0	NA	12qC3	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.798550518	sgMsh2	cell line
chr12	17175107	17175107	T	C	ENSMUST00000170580.2	NA	ENSMUSG00000051726	missense	Q/R	371	Kcnf1	ENSMUST00000170580.2:c.1112A>G	ENSMUSP00000131480.1:p.Gln371Arg	H-2-Kb	8	11	1	RSFWWAII	QSFWWAII	NetMHCpan	47	94.9	2.019	317	0.177	147.142	222.304	1.511	154.38	132.2	94.9	47	290.2284617	178.5418375	338.6413603	162.0839455	M1_p20	1.571428571	1.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.167	317	0	0	NA	12qA1.1	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.779870973	sgMsh2	cell line
chr12	24955384	24955384	T	C	ENSMUST00000110942.10	1	ENSMUSG00000020646	missense	V/A	386	Mboat2	ENSMUST00000110942.10:c.1157T>C	ENSMUSP00000106567.3:p.Val386Ala	H-2-Kb	8	5	7	LTFLTGAL	LTFLTGVL	SMMPMBEC	126.398	284.276	2.249	355	0.155	148.313	332.574	2.242	970.17	184.97	290.4	137.5	374.7485835	159.1255801	284.2758718	126.3979412	M1_p20	1.485714286	1.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.164	355	0	0	NA	12qA1.3	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.765861315	sgMsh2	cell line
chr12	69190025	69190025	GT	G	ENSMUST00000021356.5	1	ENSMUSG00000020973	FS	T/X	770	Dnaaf2	ENSMUST00000021356.5:c.2308del	ENSMUSP00000021356.5:p.Thr770LeufsTer12	H-2-Kb	8	14	0	KTYLTLTL	NA	NetMHCpan	98.5	NA	NA	520	0.221	204.29	NA	NA	NA	217.21	NA	98.5	NA	205.466016	NA	203.114066	M1_p20	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.214	520	0	0	NA	12qC2	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.999355619	sgMsh2	cell line
chr11	98157518	98157518	C	A	ENSMUST00000107545.8	1	ENSMUSG00000018160	missense	Q/H	817	Med1	ENSMUST00000107545.8:c.2451G>T	ENSMUSP00000103169.2:p.Gln817His	H-2-Kb	8	7	5	SGHSHSAL	SGHSQSAL	SMM	171.293	599.432	3.499	127	0.331	215.179	1628.022	7.566	2401.49	231.41	3726.4	792.8	599.4321055	171.2931516	854.5549615	198.9481935	M1_p20	-0.4	-0.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.325	127	0	0	NA	11qD	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	2	1	sgMsh2	cell line
chr12	72556654	72556654	T	A	ENSMUST00000044352.7	1	ENSMUSG00000034501	missense	S/T	489	Pcnx4	ENSMUST00000044352.7:c.1465T>A	ENSMUSP00000038916.6:p.Ser489Thr	H-2-Kb	8	10	2	VTIGFTRA	VSIGFTRA	SMMPMBEC	216.641	129.64	0.598	298	0.181	273.909	146.801	0.536	79.74	275.71	178.1	397.8	163.9607892	272.1071791	129.6402918	216.6406749	M1_p20	0.4	0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.191	298	0	0	NA	12qC3	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.891948239	sgMsh2	cell line
chr11	110158302	110158302	T	TA	ENSMUST00000044850.3	1	ENSMUSG00000041797	FS	-/X	226-227	Abca9	ENSMUST00000044850.3:c.678dup	ENSMUSP00000036338.3:p.Ile227TyrfsTer140	H-2-Kb	8	17	0	YFLLFTYI	NA	SMM	210.737	NA	NA	78	0.192	342.228	NA	NA	NA	471.77	NA	1021.9	NA	210.7366151	NA	212.686537	M1_p20	2.242857143	2.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.227	78	0	0	NA	11qE1	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr11	110158302	110158302	T	TA	ENSMUST00000044850.3	1	ENSMUSG00000041797	FS	-/X	226-227	Abca9	ENSMUST00000044850.3:c.678dup	ENSMUSP00000036338.3:p.Ile227TyrfsTer140	H-2-Kb	8	8	5	TDFFYFLL	TDFFIFFC	SMMPMBEC	49.061	12756.749	260.016	78	0.192	73.637	14347.604	194.843	19893.09	528.74	14804	97.3	13891.20754	49.97352678	12756.74869	49.06140712	M1_p20	1.6	1.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.227	78	0	0	NA	11qE1	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr11	110158302	110158302	T	TA	ENSMUST00000044850.3	1	ENSMUSG00000041797	FS	-/X	226-227	Abca9	ENSMUST00000044850.3:c.678dup	ENSMUSP00000036338.3:p.Ile227TyrfsTer140	H-2-Kb	8	7	6	ATDFFYFL	ATDFFIFF	SMM	109.079	2527.784	23.174	78	0.192	144.17	2322.439	16.109	5760.3	597.4	1689.7	163.1	2527.784229	109.0787117	2117.093311	125.2391179	M1_p20	0.957142857	0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.227	78	0	0	NA	11qE1	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr12	54685943	54685943	TG	T	ENSMUST00000161592.7	1	ENSMUSG00000054302	FS	H/X	127	Eapp	ENSMUST00000161592.7:c.381del	ENSMUSP00000123698.1:p.His127GlnfsTer52	H-2-Kb	8	53	0	SLFQTVML	NA	SMMPMBEC	306.719	NA	NA	144	0.306	372.068	NA	NA	NA	617.01	NA	379.6	NA	364.5356443	NA	306.71852	M1_p20	1.757142857	1.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.289	144	0	0	NA	12qC1	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	2	1	sgMsh2	cell line
chr11	117772845	117772845	T	C	ENSMUST00000026659.9	1	ENSMUSG00000025572	missense	I/V	514	Tmc6	ENSMUST00000026659.9:c.1540A>G	ENSMUSP00000026659.3:p.Ile514Val	H-2-Kb	8	10	2	LVLKMAVL	LILKMAVL	SMMPMBEC	395.13	281.67	0.713	103	0.223	457.257	401.56	0.878	565.93	825.08	490.7	423.9	312.4208431	490.6140712	281.6696149	395.1299959	M1_p20	2.257142857	2.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	103	0	0	NA	11qE2	chr11-116437720-121956668	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr12	31708932	31708932	A	G	ENSMUST00000236002.1	NA	ENSMUSG00000044067	missense	I/T	397	Gpr22	ENSMUST00000236002.1:c.1190T>C	ENSMUSP00000158030.1:p.Ile397Thr	H-2-Kb	8	8	4	GTTTFHPL	GTTIFHPL	SMMPMBEC	181.443	200.789	1.107	561	0.152	344.511	294.142	0.854	1035.85	893.41	338.4	454.2	249.8848923	234.8226582	200.7890385	181.4429089	M1_p20	-0.042857143	-0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.146	561	0	0	NA	12qA3	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.681803366	sgMsh2	cell line
chr11	110158302	110158302	T	TA	ENSMUST00000044850.3	1	ENSMUSG00000041797	FS	-/X	226-227	Abca9	ENSMUST00000044850.3:c.678dup	ENSMUSP00000036338.3:p.Ile227TyrfsTer140	H-2-Kb	9	6	7	VATDFFYFL	VATDFFIFF	NetMHCpan	19.8	177.7	8.975	78	0.192	55.872	174.795	3.128	300.65	27	177.7	19.8	142.2689086	84.74420308	171.8897579	113.5664369	M1_p20	0.957142857	0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.227	78	0	0	NA	11qE1	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr12	31709410	31709410	T	C	ENSMUST00000236002.1	NA	ENSMUSG00000044067	missense	S/G	238	Gpr22	ENSMUST00000236002.1:c.712A>G	ENSMUSP00000158030.1:p.Ser238Gly	H-2-Kb	9	9	3	STGEYYTEL	STSEYYTEL	NetMHC	37.25	32.97	0.885	430	0.128	75.815	105.246	1.388	32.97	37.25	31.7	45.4	181.1798935	108.9205937	177.521108	106.2306894	M1_p20	-0.985714286	-0.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.135	430	0	0	NA	12qA3	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.630434619	sgMsh2	cell line
chr11	110158302	110158302	T	TA	ENSMUST00000044850.3	1	ENSMUSG00000041797	FS	-/X	226-227	Abca9	ENSMUST00000044850.3:c.678dup	ENSMUSP00000036338.3:p.Ile227TyrfsTer140	H-2-Kb	9	118	0	LGYLHPYRL	NA	NetMHCpan	27.7	NA	NA	78	0.192	108.333	NA	NA	NA	56.3	NA	27.7	NA	160.3651519	NA	178.7516256	M1_p20	-0.614285714	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.227	78	0	0	NA	11qE1	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr11	120792493	120792493	GT	G	ENSMUST00000167023.7	1	ENSMUSG00000025155	FS	N/X	235	Dus1l	ENSMUST00000167023.7:c.704del	ENSMUSP00000132516.1:p.Asn235ThrfsTer61	H-2-Kb	9	41	0	VHYRMSGPI	NA	NetMHC	63.43	NA	NA	70	0.286	132.965	NA	NA	NA	63.43	NA	126.9	NA	139.0304729	NA	166.8207233	M1_p20	-0.314285714	-0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.265	70	0	0	NA	11qE2	chr11-116437720-121956668	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr11	120134832	120134832	A	G	ENSMUST00000103018.10	1	ENSMUSG00000061306	missense	M/T	226	Slc38a10	ENSMUST00000103018.10:c.677T>C	ENSMUSP00000099307.4:p.Met226Thr	H-2-Kb	9	11	1	TSSIFASSL	MSSIFASSL	NetMHCpan	80.7	63.8	0.791	290	0.231	321.872	325.304	1.011	80.3	100.18	63.8	80.7	570.3087043	561.1900987	641.5787927	543.5631415	M1_p20	1.5	1.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.231	290	0	0	NA	11qE2	chr11-116437720-121956668	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr12	32848661	32848661	CA	C	ENSMUST00000020886.8	1	ENSMUSG00000020572	FS	S/X	425	Nampt	ENSMUST00000020886.8:c.1280del	ENSMUSP00000020886.7:p.Lys427ArgfsTer41	H-2-Kb	9	42	0	IFSIRFSRM	NA	NetMHC	106.03	NA	NA	103	0.184	163.493	NA	NA	NA	106.03	NA	225	NA	180.3474475	NA	146.6391721	M1_p20	-0.2	1.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.179	103	0	0	NA	12qA3	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.835909606	sgMsh2	cell line
chr12	31547124	31547124	T	C	ENSMUST00000001253.7	1	ENSMUSG00000020651	missense	N/S	248	Slc26a4	ENSMUST00000001253.7:c.743A>G	ENSMUSP00000001253.7:p.Asn248Ser	H-2-Kb	9	5	7	VSTKNYSGI	VSTKNYNGI	NetMHC	120.76	277.9	2.301	311	0.132	269.151	316.632	1.176	277.9	120.76	586.2	300.6	296.558243	258.8868552	336.7053368	279.4151821	M1_p20	-0.871428571	-0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.122	311	0	0	NA	12qA2	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.5697261	sgMsh2	cell line
chr12	69190025	69190025	GT	G	ENSMUST00000021356.5	1	ENSMUSG00000020973	FS	T/X	770	Dnaaf2	ENSMUST00000021356.5:c.2308del	ENSMUSP00000021356.5:p.Thr770LeufsTer12	H-2-Kb	9	11	1	LWFKTYLTL	NA	SMM	52.736	NA	NA	520	0.221	87.638	NA	NA	NA	123.24	NA	86.1	NA	52.73634174	NA	89.17641311	M1_p20	0.542857143	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.214	520	0	0	NA	12qC2	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.999355619	sgMsh2	cell line
chr12	32848661	32848661	CA	C	ENSMUST00000020886.8	1	ENSMUSG00000020572	FS	S/X	425	Nampt	ENSMUST00000020886.8:c.1280del	ENSMUSP00000020886.7:p.Lys427ArgfsTer41	H-2-Kb	9	39	0	MAMIFSIRF	NA	NetMHC	133.27	NA	NA	103	0.184	195.787	NA	NA	NA	133.27	NA	206.6	NA	184.9737069	NA	248.4562923	M1_p20	1.6	2.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.179	103	0	0	NA	12qA3	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.835909606	sgMsh2	cell line
chr12	72556654	72556654	T	A	ENSMUST00000044352.7	1	ENSMUSG00000034501	missense	S/T	489	Pcnx4	ENSMUST00000044352.7:c.1465T>A	ENSMUSP00000038916.6:p.Ser489Thr	H-2-Kb	9	10	2	VTIGFTRAF	VSIGFTRAF	NetMHC	135.99	77.66	0.571	298	0.181	241.68	150.693	0.624	77.66	135.99	132.3	200.8	169.0869148	282.5595563	216.3963843	351.7628732	M1_p20	0.9	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.191	298	0	0	NA	12qC3	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.891948239	sgMsh2	cell line
chr11	116047690	116047690	T	C	ENSMUST00000021116.11	1	ENSMUSG00000020770	missense	F/L	40	Unk	ENSMUST00000021116.11:c.118T>C	ENSMUSP00000021116.5:p.Phe40Leu	H-2-Kb	9	3	9	QHYTYLKEL	QHYTYLKEF	NetMHC	157.48	600.28	3.812	176	0.25	176.351	480.118	2.723	600.28	157.48	601.2	194.9	266.1399065	157.8010905	359.9564831	208.0894201	M1_p20	-0.442857143	-0.442857143	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.258	176	0	0	NA	11qE2	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr11	95969851	95969851	T	G	ENSMUST00000013559.2	1	ENSMUSG00000013415	missense	S/R	359	Igf2bp1	ENSMUST00000013559.2:c.1075A>C	ENSMUSP00000013559.2:p.Ser359Arg	H-2-Kb	9	8	4	AAMRLQSHL	AAMSLQSHL	NetMHC	159.08	222.94	1.401	176	0.273	409.595	316.523	0.773	222.94	159.08	226.5	212.3	406.5462879	606.8900259	544.816184	635.696763	M1_p20	-0.357142857	0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.27	176	0	0	NA	11qD	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr11	120792493	120792493	GT	G	ENSMUST00000167023.7	1	ENSMUSG00000025155	FS	N/X	235	Dus1l	ENSMUST00000167023.7:c.704del	ENSMUSP00000132516.1:p.Asn235ThrfsTer61	H-2-Kb	9	56	0	TRYRYISNF	NA	NetMHC	190.62	NA	NA	70	0.286	243.391	NA	NA	NA	190.62	NA	226.7	NA	260.0818226	NA	263.1782532	M1_p20	-0.585714286	-0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.265	70	0	0	NA	11qE2	chr11-116437720-121956668	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr12	55707969	55707969	A	G	ENSMUST00000085385.6	1	ENSMUSG00000021027	missense	L/S	1179	Ralgapa1	ENSMUST00000085385.6:c.3536T>C	ENSMUSP00000082503.5:p.Leu1179Ser	H-2-Kb	9	4	8	YNIMHCGSL	YNIMHCGLL	NetMHCpan	97.8	114.6	1.172	228	0.105	248.131	188.429	0.759	147.64	214.91	114.6	97.8	277.4022632	379.4110717	229.2186762	281.3519957	M1_p20	1.185714286	1.185714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.124	228	0	0	NA	12qC1	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.579065872	sgMsh2	cell line
chr11	110158302	110158302	T	TA	ENSMUST00000044850.3	1	ENSMUSG00000041797	FS	-/X	226-227	Abca9	ENSMUST00000044850.3:c.678dup	ENSMUSP00000036338.3:p.Ile227TyrfsTer140	H-2-Kb	9	7	6	ATDFFYFLL	ATDFFIFFC	SMM	120.534	11145.768	92.47	78	0.192	148.653	11782.909	79.265	12420.05	230.73	14181.4	165.1	11145.76803	120.5341196	7555.270188	132.2056452	M1_p20	1.6	1.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.227	78	0	0	NA	11qE1	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr12	24955384	24955384	T	C	ENSMUST00000110942.10	1	ENSMUSG00000020646	missense	V/A	386	Mboat2	ENSMUST00000110942.10:c.1157T>C	ENSMUSP00000106567.3:p.Val386Ala	H-2-Kb	9	5	7	LTFLTGALM	LTFLTGVLM	NetMHC	354.25	977.61	2.76	355	0.155	486.696	929.583	1.91	977.61	354.25	1440.3	432.5	780.0276543	540.8913049	881.5561915	650.5040428	M1_p20	1.857142857	1.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.164	355	0	0	NA	12qA1.3	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.765861315	sgMsh2	cell line
chr11	110158302	110158302	T	TA	ENSMUST00000044850.3	1	ENSMUSG00000041797	FS	-/X	226-227	Abca9	ENSMUST00000044850.3:c.678dup	ENSMUSP00000036338.3:p.Ile227TyrfsTer140	H-2-Kb	9	12	1	YFLLCYFLL	NA	SMM	188.847	NA	NA	78	0.192	300.564	NA	NA	NA	354.95	NA	3495.6	NA	188.8469608	NA	246.1784313	M1_p20	2.742857143	2.742857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.227	78	0	0	NA	11qE1	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr11	98029849	98029849	A	G	ENSMUST00000017548.6	1	ENSMUSG00000017404	missense	K/R	144	Rpl19	ENSMUST00000017548.6:c.431A>G	ENSMUSP00000017548.6:p.Lys144Arg	H-2-Kb	9	4	8	ILMEHIHRL	ILMEHIHKL	NetMHCpan	116.2	215.6	1.855	160	0.306	491.725	943.052	1.918	1087.65	454.7	215.6	116.2	1230.580418	674.6988967	798.4541822	528.7495369	M1_p20	-0.6	0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.293	160	0	0	NA	11qD	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr12	51999859	51999859	T	G	ENSMUST00000021339.7	1	ENSMUSG00000020956	missense	N/H	66	Dtd2	ENSMUST00000021339.7:c.196A>C	ENSMUSP00000021339.7:p.Asn66His	H-2-Kb	9	6	6	VNTLLHVKL	VNTLLNVKL	NetMHCpan	212.6	1257.5	5.915	64	0.156	402.088	1117.492	2.779	1647.25	460.42	1257.5	212.6	977.4847712	462.4981501	708.3534281	343.7557727	M1_p20	1.114285714	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.148	64	0	0	NA	12qC1	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.691143138	sgMsh2	cell line
chr11	102061618	102061618	G	A	ENSMUST00000017458.10	1	ENSMUSG00000017314	missense	A/V	343	Mpp2	ENSMUST00000017458.10:c.1028C>T	ENSMUSP00000017458.3:p.Ala343Val	H-2-Kb	9	5	7	LIYEEVVRM	LIYEEVARM	NetMHCpan	384	183	0.477	25	0.36	422.457	242.216	0.573	185.13	506.32	183	384	299.3022626	431.6283877	304.9650004	413.2853397	M1_p20	-0.357142857	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.353	25	0	0	NA	11qD	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	2	1	sgMsh2	cell line
chr11	110158302	110158302	T	TA	ENSMUST00000044850.3	1	ENSMUSG00000041797	FS	-/X	226-227	Abca9	ENSMUST00000044850.3:c.678dup	ENSMUSP00000036338.3:p.Ile227TyrfsTer140	H-2-Kb	9	16	0	CYFLLFTYI	NA	SMM	217.325	NA	NA	78	0.192	424.914	NA	NA	NA	542.75	NA	1310	NA	217.325156	NA	307.0789168	M1_p20	2.242857143	2.242857143	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.227	78	0	0	NA	11qE1	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr11	110158302	110158302	T	TA	ENSMUST00000044850.3	1	ENSMUSG00000041797	FS	-/X	226-227	Abca9	ENSMUST00000044850.3:c.678dup	ENSMUSP00000036338.3:p.Ile227TyrfsTer140	H-2-Kb	9	10	3	FFYFLLCYF	NA	SMM	249.523	NA	NA	78	0.192	468.89	NA	NA	NA	607.98	NA	6288	NA	249.5226649	NA	329.7995054	M1_p20	1.871428571	2.457142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.227	78	0	0	NA	11qE1	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr11	114987405	114987405	T	G	ENSMUST00000045075.2	1	ENSMUSG00000034641	missense	T/P	94	Cd300ld	ENSMUST00000045075.2:c.280A>C	ENSMUSP00000047022.2:p.Thr94Pro	H-2-Kb	9	4	8	RDFIFTVPM	RDFIFTVTM	SMMPMBEC	413.285	752.056	1.82	507	0.211	465.648	927.044	1.991	2749.39	1529.58	988.9	447	865.1870294	484.2950164	752.0556875	413.2853397	M1_p20	1.985714286	1.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.215	507	0	0	NA	11qE2	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr12	117974938	117974938	G	A	ENSMUST00000084806.6	1	ENSMUSG00000018581	missense	A/V	3265	Dnah11	ENSMUST00000084806.6:c.9794C>T	ENSMUSP00000081867.6:p.Ala3265Val	H-2-Kb	8	7	5	KSFAVAGL	KSFAAAGL	NetMHC	11.66	16.83	1.443	194	0.211	23.502	30.038	1.278	16.83	11.66	34.2	31.4	28.6906244	22.52890066	31.38629122	24.47597495	M1_p20	1.885714286	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.205	194	0	0	NA	12qF2	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.957326644	sgMsh2	cell line
chr12	98275382	98275382	T	C	ENSMUST00000075072.5	1	ENSMUSG00000021886	missense	M/T	98	Gpr65	ENSMUST00000075072.5:c.293T>C	ENSMUSP00000074581.4:p.Met98Thr	H-2-Kb	8	6	6	VFFTYTNF	VFFTYMNF	SMMPMBEC	20.358	18.019	0.885	379	0.185	21.686	17.92	0.826	17.82	22.25	45.7	37.4	16.50973111	21.12224132	18.01938647	20.35822922	M1_p20	0.314285714	0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.187	379	0	0	NA	12qE	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.873268695	sgMsh2	cell line
chr12	108361203	108361203	T	C	ENSMUST00000021684.5	1	ENSMUSG00000021259	missense	F/L	425	Cyp46a1	ENSMUST00000021684.5:c.1273T>C	ENSMUSP00000021684.4:p.Phe425Leu	H-2-Kb	8	11	1	LTYFPFSL	FTYFPFSL	NetMHCpan	22.8	31.8	1.395	154	0.175	102.142	85.132	0.833	67.05	60.82	31.8	22.8	103.2143305	143.4630303	134.1961326	157.666708	M1_p20	0.714285714	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.189	154	0	0	NA	12qF1	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.882608467	sgMsh2	cell line
chr13	49627300	49627300	CA	C	ENSMUST00000021818.8	1	ENSMUSG00000021391	FS	F/X	172	Cenpp	ENSMUST00000021818.8:c.516del	ENSMUSP00000021818.7:p.Phe172LeufsTer47	H-2-Kb	8	15	0	VNIVRTHL	NA	NetMHC	64.31	NA	NA	47	0.234	136.441	NA	NA	NA	64.31	NA	69.3	NA	225.2890066	NA	203.5822922	M1_p20	0.085714286	0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.233	47	0	0	NA	13qA5	chr13-3556297-66008860	3	2	1	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr13	61251720	61251720	GA	G	ENSMUST00000021891.4	1	ENSMUSG00000057446	FS	S/X	142	Cts8	ENSMUST00000021891.4:c.424del	ENSMUSP00000021891.3:p.Ser142LeufsTer6	H-2-Kb	8	6	6	SCWAFLRL	SCWAFSAA	SMMPMBEC	41.566	624.799	15.031	158	0.323	62.462	1317.047	21.086	2840.81	76.42	1590	62.3	1044.094962	62.62388407	624.7985313	41.56616909	M1_p20	1.328571429	1.328571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.303	158	0	0	NA	13qB2	chr13-3556297-66008860	3	2	1	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr12	75716177	75716177	C	A	ENSMUST00000021450.5	1	ENSMUSG00000021054	missense	G/V	410	Sgpp1	ENSMUST00000021450.5:c.1229G>T	ENSMUSP00000021450.4:p.Gly410Val	H-2-Kb	8	8	4	ITYVMVGF	ITYGMVGF	NetMHCpan	71.7	131.8	1.838	335	0.122	126.749	402.15	3.173	373.04	92.9	131.8	71.7	585.787365	231.6007706	431.2608157	160.597951	M1_p20	1.528571429	1.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.126	335	0	0	NA	12qC3	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.588405645	sgMsh2	cell line
chr13	54221267	54221267	TC	T	ENSMUST00000038101.3	1	ENSMUSG00000034987	FS	S/X	374	Hrh2	ENSMUST00000038101.3:c.1122del	ENSMUSP00000038170.3:p.Phe375SerfsTer53	H-2-Kb	8	26	0	SNHHYISV	NA	NetMHCpan	84.2	NA	NA	58	0.362	192.438	NA	NA	NA	148.97	NA	84.2	NA	235.9065504	NA	249.310173	M1_p20	-0.471428571	-0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.342	58	0	0	NA	13qB1	chr13-3556297-66008860	3	2	1	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr12	103104843	103104843	CA	C	ENSMUST00000101099.11	1	ENSMUSG00000021198	FS	Q/X	1330	Unc79	ENSMUST00000101099.11:c.3994del	ENSMUSP00000098659.5:p.Met1332CysfsTer59	H-2-Kb	8	32	0	ITLTWANT	NA	SMMPMBEC	112.912	NA	NA	318	0.182	220.203	NA	NA	NA	238.69	NA	942.4	NA	201.7158386	NA	112.911974	M1_p20	-0.128571429	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.181	318	0	0	NA	12qE	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.845249378	sgMsh2	cell line
chr13	21133240	21133240	A	G	ENSMUST00000215804.1	5	ENSMUSG00000071522	missense	N/S	155	Olfr263	ENSMUST00000215804.1:c.464A>G	ENSMUSP00000149892.1:p.Asn155Ser	H-2-Kb	8	11	1	SSVILCTL	NSVILCTL	NetMHCpan	249.6	2098.7	8.408	1002	0.271	274.698	1990.611	7.247	5833.61	253.09	2098.7	249.6	1882.521739	296.3056959	1865.262676	328.6548155	M1_p20	2.471428571	2.471428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.269	1002	0	0	NA	13qA2	chr13-3556297-66008860	3	2	1	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr13	49627300	49627300	CA	C	ENSMUST00000021818.8	1	ENSMUSG00000021391	FS	F/X	172	Cenpp	ENSMUST00000021818.8:c.516del	ENSMUSP00000021818.7:p.Phe172LeufsTer47	H-2-Kb	8	8	4	LHFLWSGV	NA	NetMHCpan	276.5	NA	NA	47	0.234	348.386	NA	NA	NA	358.13	NA	276.5	NA	437.2602513	NA	338.6413603	M1_p20	0.785714286	0.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.233	47	0	0	NA	13qA5	chr13-3556297-66008860	3	2	1	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr12	79261656	79261656	C	T	ENSMUST00000021547.7	1	ENSMUSG00000066440	missense	D/N	1705	Zfyve26	ENSMUST00000021547.7:c.5113G>A	ENSMUSP00000021547.6:p.Asp1705Asn	H-2-Kb	8	6	6	IGFTLNEV	IGFTLDEV	NetMHCpan	303.9	1187.3	3.907	232	0.22	375.252	970.102	2.585	1333.11	383.96	1187.3	303.9	696.209588	367.908651	752.9046857	382.5956254	M1_p20	0.385714286	0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.217	232	0	0	NA	12qC3	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	2	1	sgMsh2	cell line
chr13	49627300	49627300	CA	C	ENSMUST00000021818.8	1	ENSMUSG00000021391	FS	F/X	172	Cenpp	ENSMUST00000021818.8:c.516del	ENSMUSP00000021818.7:p.Phe172LeufsTer47	H-2-Kb	8	31	0	ILYTSWRV	NA	SMM	356.238	NA	NA	47	0.234	428.33	NA	NA	NA	1273.45	NA	493.8	NA	356.2377999	NA	362.8607551	M1_p20	-0.028571429	0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.233	47	0	0	NA	13qA5	chr13-3556297-66008860	3	2	1	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr12	98275382	98275382	T	C	ENSMUST00000075072.5	1	ENSMUSG00000021886	missense	M/T	98	Gpr65	ENSMUST00000075072.5:c.293T>C	ENSMUSP00000074581.4:p.Met98Thr	H-2-Kb	9	5	7	SVFFTYTNF	SVFFTYMNF	NetMHCpan	31	33.7	1.087	379	0.185	50.82	51.291	1.009	31.09	34.48	33.7	31	68.88267433	67.15989369	103.5738214	93.37916798	M1_p20	0.314285714	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.187	379	0	0	NA	12qE	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.873268695	sgMsh2	cell line
chr12	84106461	84106461	G	T	ENSMUST00000056822.3	1	ENSMUSG00000043487	missense	G/V	159	Acot6	ENSMUST00000056822.3:c.476G>T	ENSMUSP00000056131.3:p.Gly159Val	H-2-Kb	9	11	1	VIIDLYGSI	GIIDLYGSI	NetMHCpan	77.9	1628.7	20.908	249	0.141	151.163	1429.64	9.458	2254.44	116.01	1628.7	77.9	1230.580418	226.5217979	933.7916798	186.3159349	M1_p20	0.971428571	1.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.159	249	0	0	NA	12qD1	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.742511885	sgMsh2	cell line
chr13	54221267	54221267	TC	T	ENSMUST00000038101.3	1	ENSMUSG00000034987	FS	S/X	374	Hrh2	ENSMUST00000038101.3:c.1122del	ENSMUSP00000038170.3:p.Phe375SerfsTer53	H-2-Kb	9	26	0	SNHHYISVL	NA	NetMHCpan	68.7	NA	NA	58	0.362	178.271	NA	NA	NA	141.14	NA	68.7	NA	229.67303	NA	215.4021332	M1_p20	0.571428571	0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.342	58	0	0	NA	13qB1	chr13-3556297-66008860	3	2	1	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr12	118008803	118008803	A	G	ENSMUST00000084806.6	1	ENSMUSG00000018581	missense	F/S	2882	Dnah11	ENSMUST00000084806.6:c.8645T>C	ENSMUSP00000081867.6:p.Phe2882Ser	H-2-Kb	9	10	2	VSLLTDAHV	VFLLTDAHV	NetMHC	151.93	528.66	3.48	746	0.196	432.793	838.709	1.938	528.66	151.93	3378.6	1196.3	713.0336075	385.5760057	964.3840079	480.0096849	M1_p20	0.885714286	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.195	746	0	0	NA	12qF2	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.910627783	sgMsh2	cell line
chr12	75716177	75716177	C	A	ENSMUST00000021450.5	1	ENSMUSG00000021054	missense	G/V	410	Sgpp1	ENSMUST00000021450.5:c.1229G>T	ENSMUSP00000021450.4:p.Gly410Val	H-2-Kb	9	11	1	VMVGFSITF	GMVGFSITF	SMM	93.349	507.119	5.433	335	0.122	171.911	1429.349	8.314	2096.18	191.68	3962.6	381.5	507.1191374	93.34907095	762.5178243	152.1423079	M1_p20	1.771428571	2.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.126	335	0	0	NA	12qC3	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.588405645	sgMsh2	cell line
chr12	116318844	116318844	A	C	ENSMUST00000100986.3	1	ENSMUSG00000021171	missense	E/A	138	Esyt2	ENSMUST00000100986.3:c.413A>C	ENSMUSP00000098548.2:p.Glu138Ala	H-2-Kb	9	5	7	FICQFIAKL	FICQFIEKL	NetMHC	274.03	1858.1	6.781	353	0.212	434.65	1868.7	4.299	1858.1	274.03	1879.3	413	1888.469608	820.5593529	1023.882217	456.2995075	M1_p20	1.142857143	2.2	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.199	353	0	0	NA	12qF2	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.929307328	sgMsh2	cell line
chr12	111678648	111678648	A	G	ENSMUST00000084947.9	1	ENSMUSG00000060950	missense	Y/C	6	Trmt61a	ENSMUST00000084947.9:c.17A>G	ENSMUSP00000082011.3:p.Tyr6Cys	H-2-Kb	9	1	6	MSFVACEEL	MSFVAYEEL	NetMHCpan	242.1	23.8	0.098	240	0.171	359.464	57.617	0.16	18.72	290.27	23.8	242.1	91.43448014	428.6570788	121.6886295	527.5334467	M1_p20	1.157142857	1.271428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.17	240	0	0	NA	12qF1	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.793880632	sgMsh2	cell line
chr12	98275382	98275382	T	C	ENSMUST00000075072.5	1	ENSMUSG00000021886	missense	M/T	98	Gpr65	ENSMUST00000075072.5:c.293T>C	ENSMUSP00000074581.4:p.Met98Thr	H-2-Kb	9	11	1	TNFYSSTAF	MNFYSSTAF	SMM	318.5	323.676	1.016	379	0.185	365.539	317.878	0.87	312.08	327.2	253.8	411.6	323.6756285	318.5004131	476.7053215	403.8778168	M1_p20	0.542857143	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.187	379	0	0	NA	12qE	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.873268695	sgMsh2	cell line
chr13	22524943	22524943	A	G	ENSMUST00000227520.1	NA	ENSMUSG00000069289	missense	D/G	298	Vmn1r203	ENSMUST00000227520.1:c.893A>G	ENSMUSP00000153892.1:p.Asp298Gly	H-2-Kb	9	5	7	FVLIHRGGL	FVLIHRDGL	NetMHC	368.42	982.88	2.668	297	0.232	428.888	853.75	1.991	982.88	368.42	1406.4	658.5	724.6194716	440.6664633	721.5227015	417.1094219	M1_p20	0.514285714	1.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.234	297	0	0	NA	13qA3.1	chr13-3556297-66008860	3	2	1	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr13	75878849	75878849	T	G	ENSMUST00000022078.11	1	ENSMUSG00000021589	missense	K/N	468	Rhobtb3	ENSMUST00000022078.11:c.1404A>C	ENSMUSP00000022078.5:p.Lys468Asn	H-2-Db	9	7	5	YGVSNETFL	YGVSKETFL	NetMHC	4.07	552.12	135.656	212	0.377	38.329	1708.94	44.587	552.12	4.07	1286.7	11.1	2131.179353	65.55714019	2236.505652	66.61468828	M1_p20	0.328571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.355	212	0	0	NA	13qC1	chr13-66854181-119495179	3	2	1	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr14	45614188	45614188	T	C	ENSMUST00000087320.12	1	ENSMUSG00000037697	missense	Y/C	511	Ddhd1	ENSMUST00000087320.12:c.1532A>G	ENSMUSP00000084577.5:p.Tyr511Cys	H-2-Kb	8	8	4	IMYCTSPL	IMYYTSPL	NetMHC	11.28	6.72	0.596	256	0.223	26.327	19.907	0.756	6.72	11.28	8.5	16.2	35.54184757	37.30267702	31.31410475	36.45356443	M1_p20	0.542857143	0.642857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.222	256	0	0	NA	14qC1	chr14-44852972-53132795	3.13208169	3.13208169	0	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr14	52036009	52036009	A	G	ENSMUST00000214071.1	5	ENSMUSG00000044286	missense	M/T	34	Olfr221	ENSMUST00000214071.1:c.101T>C	ENSMUSP00000150675.1:p.Met34Thr	H-2-Kb	8	10	2	VTYAITVL	VMYAITVL	NetMHCpan	26.2	23.8	0.908	153	0.314	60.149	92.464	1.537	54.39	47.73	23.8	26.2	137.3219621	75.63799359	130.5389154	72.56713881	M1_p20	1.657142857	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.329	153	0	0	NA	14qC2	chr14-44852972-53132795	3.13208169	3.13208169	0	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr14	65975611	65975611	T	G	ENSMUST00000022616.13	1	ENSMUSG00000022037	missense	F/V	149	Clu	ENSMUST00000022616.13:c.445T>G	ENSMUSP00000022616.6:p.Phe149Val	H-2-Kb	8	8	4	SSPVYFWM	SSPFYFWM	NetMHCpan	60.6	40.4	0.667	81	0.284	147.752	201.93	1.367	223.25	116.55	40.4	60.6	180.6092545	178.9534189	234.2825811	206.8902384	M1_p20	0.614285714	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.285	81	0	0	NA	14qD1	chr14-53336808-123291781	3	2	1	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr14	30565598	30565598	A	C	ENSMUST00000022529.7	1	ENSMUSG00000021957	missense	D/A	183	Tkt	ENSMUST00000022529.7:c.548A>C	ENSMUSP00000022529.6:p.Asp183Ala	H-2-Kb	8	8	4	AIFAINRL	AIFDINRL	NetMHCpan	63.2	123.2	1.949	62	0.177	133.004	297.159	2.234	429.52	121.55	123.2	63.2	314.5864409	164.7175978	279.7306149	144.4574685	M1_p20	1.342857143	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.21	62	0	0	NA	14qB	chr14-19751082-41183403	3	2	1	0.9	4.202897461	NA	1	0.980676074	sgMsh2	cell line
chr14	123515710	123515710	C	A	ENSMUST00000000201.6	5	ENSMUSG00000000197	missense	R/I	288	Nalcn	ENSMUST00000000201.6:c.863G>T	ENSMUSP00000000201.5:p.Arg288Ile	H-2-Kb	8	6	6	VFLMYIAI	VFLMYRAI	SMM	80.675	70.265	0.871	192	0.365	117.27	70.672	0.603	62.95	152.93	94.9	239.3	70.26515361	80.67519058	71.07878574	81.60936526	M1_p20	2.571428571	2.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.339	192	0	0	NA	14qE5	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	sgMsh2	cell line
chr14	66004100	66004100	T	A	ENSMUST00000059970.8	1	ENSMUSG00000034450	missense	H/L	103	Gulo	ENSMUST00000059970.8:c.308A>T	ENSMUSP00000060912.7:p.His103Leu	H-2-Kb	8	11	1	LGLALSNL	HGLALSNL	NetMHC	204.75	1235.08	6.032	55	0.291	230.187	887.134	3.854	1235.08	204.75	1375.1	217.3	539.1877292	243.0748352	512.5544401	245.8895091	M1_p20	1.214285714	1.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.271	55	0	0	NA	14qD1	chr14-53336808-123291781	3	2	1	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr15	3325898	3325898	C	A	ENSMUST00000069451.10	1	ENSMUSG00000055737	missense	R/M	301	Ghr	ENSMUST00000069451.10:c.902G>T	ENSMUSP00000069457.4:p.Arg301Met	H-2-Kb	8	4	8	VIFSKQQM	VIFSKQQR	NetMHCpan	188.2	12750.8	67.751	210	0.338	363.498	6741.575	18.546	9458.39	228.41	12750.8	188.2	2790.872523	500.8872766	4024.76011	498.5859086	M1_p20	-0.357142857	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.355	210	0	0	NA	15qA1	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	2	1	sgMsh2	cell line
chr13	106953470	106953470	GA	G	ENSMUST00000022203.9	1	ENSMUSG00000021692	FS	K/X	234	Dimt1	ENSMUST00000022203.9:c.704del	ENSMUSP00000022203.8:p.Asn235ThrfsTer31	H-2-Kb	8	34	0	FTVQYRIL	NA	SMM	174.478	NA	NA	388	0.356	210.261	NA	NA	NA	261.72	NA	216	NA	174.4777291	NA	204.5219854	M1_p20	0.357142857	0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.355	388	0	0	NA	13qD2.1	chr13-66854181-119495179	3	2	1	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr14	108912776	108912776	T	C	ENSMUST00000100322.3	NA	ENSMUSG00000075478	missense	T/A	168	Slitrk1	ENSMUST00000100322.3:c.502A>G	ENSMUSP00000097897.2:p.Thr168Ala	H-2-Kb	8	9	3	ISALPANV	ISTLPANV	SMM	194.868	217.641	1.117	62	0.339	278.341	278.464	1	284.82	287.07	1132.8	711.5	217.6406428	194.8677632	272.1071791	269.6124854	M1_p20	0.814285714	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.333	62	0	0	NA	14qE3	chr14-53336808-123291781	3	2	1	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr14	50360968	50360968	CT	C	ENSMUST00000185091.1	2	ENSMUSG00000051969	FS	L/X	137	Tlr11	ENSMUST00000185091.1:c.417del	ENSMUSP00000138814.1:p.Phe139LeufsTer9	H-2-Kb	8	8	6	LQYLFLII	LQYLFFDH	NetMHCpan	189.6	2553.5	13.468	249	0.357	389.759	3288.15	8.436	4022.8	567.16	2553.5	189.6	4273.069928	396.0408646	1376.385219	383.4775994	M1_p20	2.085714286	2.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.349	249	0	0	NA	14qC1	chr14-44852972-53132795	3.13208169	3.13208169	0	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr14	37081422	37081422	T	C	ENSMUST00000022337.10	1	ENSMUSG00000021803	missense	T/A	566	Cdhr1	ENSMUST00000022337.10:c.1696A>G	ENSMUSP00000022337.9:p.Thr566Ala	H-2-Kb	8	5	7	LAEVFVAL	LAEVFVTL	SMMPMBEC	164.339	258.666	1.574	154	0.338	413.409	473.233	1.145	1279.74	711.73	522.1	571.7	424.3654321	255.1173529	258.6663888	164.3387578	M1_p20	2.157142857	2.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.354	154	0	0	NA	14qB	chr14-19751082-41183403	3	2	1	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr15	16823315	16823315	CA	C	ENSMUST00000228307.1	NA	ENSMUSG00000025370	FS	K/X	128	Cdh9	ENSMUST00000228307.1:c.383del	ENSMUSP00000154022.1:p.Lys128ArgfsTer3	H-2-Kb	9	4	8	SLYILRARL	SLYILRAKA	NetMHC	34.72	2987.65	86.05	153	0.196	138.433	2844.375	20.547	2987.65	34.72	2701.1	48.7	4386.417848	267.9847002	2662.257137	228.165512	M1_p20	0.514285714	1.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.204	153	0	0	NA	15qA2	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	1	0.952656758	sgMsh2	cell line
chr15	3325898	3325898	C	A	ENSMUST00000069451.10	1	ENSMUSG00000055737	missense	R/M	301	Ghr	ENSMUST00000069451.10:c.902G>T	ENSMUSP00000069457.4:p.Arg301Met	H-2-Kb	9	4	8	VIFSKQQMI	VIFSKQQRI	NetMHC	128.02	112.77	0.881	210	0.338	167.824	129.667	0.773	112.77	128.02	141	229.5	118.334124	147.6080354	149.021867	188.039895	M1_p20	-0.357142857	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.355	210	0	0	NA	15qA1	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	2	1	sgMsh2	cell line
chr14	57480701	57480701	T	C	ENSMUST00000122063.7	1	ENSMUSG00000040040	missense	M/T	577	Ift88	ENSMUST00000122063.7:c.1730T>C	ENSMUSP00000113768.1:p.Met577Thr	H-2-Kb	9	5	7	QAIEWLTQL	QAIEWLMQL	NetMHC	144.21	130.29	0.903	299	0.331	232.952	219.487	0.942	130.29	144.21	188.3	221.5	250.6744092	244.4049514	289.2344371	260.7654204	M1_p20	0.5	0.5	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.333	299	0	0	NA	14qC3	chr14-53336808-123291781	3	2	1	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr13	75878849	75878849	T	G	ENSMUST00000022078.11	1	ENSMUSG00000021589	missense	K/N	468	Rhobtb3	ENSMUST00000022078.11:c.1404A>C	ENSMUSP00000022078.5:p.Lys468Asn	H-2-Kb	9	10	2	SNETFLSFL	SKETFLSFL	NetMHC	152.36	2784.6	18.276	212	0.377	305.223	2383.314	7.808	2784.6	152.36	3434.7	227.4	1982.028979	421.8033261	1691.414308	383.0451784	M1_p20	1.171428571	1.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.355	212	0	0	NA	13qC1	chr13-66854181-119495179	3	2	1	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr14	30565598	30565598	A	C	ENSMUST00000022529.7	1	ENSMUSG00000021957	missense	D/A	183	Tkt	ENSMUST00000022529.7:c.548A>C	ENSMUSP00000022529.6:p.Asp183Ala	H-2-Kb	9	7	5	VAIFAINRL	VAIFDINRL	NetMHCpan	105.3	537.5	5.104	62	0.177	203.936	485.56	2.381	877.91	173.39	537.5	105.3	433.6206938	234.4822647	361.6179668	276.8534884	M1_p20	1.342857143	2.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.21	62	0	0	NA	14qB	chr14-19751082-41183403	3	2	1	0.9	4.202897461	NA	1	0.980676074	sgMsh2	cell line
chr14	56761852	56761852	A	C	ENSMUST00000022507.12	1	ENSMUSG00000021938	missense	L/V	316	Pspc1	ENSMUST00000022507.12:c.946T>G	ENSMUSP00000022507.5:p.Leu316Val	H-2-Kb	9	11	1	VMLMRQDLM	LMLMRQDLM	SMM	117.249	337.373	2.877	137	0.292	170.678	505.031	2.959	672.69	215.68	1505.6	463.1	337.3727491	117.2492302	325.2744865	125.6753201	M1_p20	-0.014285714	0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.312	137	0	0	NA	14qC3	chr14-53336808-123291781	3	2	1	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr14	123515710	123515710	C	A	ENSMUST00000000201.6	5	ENSMUSG00000000197	missense	R/I	288	Nalcn	ENSMUST00000000201.6:c.863G>T	ENSMUSP00000000201.5:p.Arg288Ile	H-2-Kb	9	5	7	WVFLMYIAI	WVFLMYRAI	SMM	126.506	178.694	1.413	192	0.365	190.437	187.572	0.985	117.77	251.38	308	1796.8	178.6940122	126.5056726	196.4490803	129.4941055	M1_p20	2.571428571	2.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.339	192	0	0	NA	14qE5	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	sgMsh2	cell line
chr14	50360968	50360968	CT	C	ENSMUST00000185091.1	2	ENSMUSG00000051969	FS	L/X	137	Tlr11	ENSMUST00000185091.1:c.417del	ENSMUSP00000138814.1:p.Phe139LeufsTer9	H-2-Kb	9	8	6	LQYLFLIIM	LQYLFFDHH	SMM	108.921	557.327	5.117	249	0.357	221.413	1537.683	6.945	2518.04	289.63	4225.9	983.6	557.3268932	108.9205937	533.6419961	153.196908	M1_p20	2.857142857	2.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.349	249	0	0	NA	14qC1	chr14-44852972-53132795	3.13208169	3.13208169	0	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr14	34594872	34594872	T	C	ENSMUST00000022331.2	1	ENSMUSG00000021799	missense	Y/C	320	Opn4	ENSMUST00000022331.2:c.959A>G	ENSMUSP00000022331.2:p.Tyr320Cys	H-2-Kb	9	6	6	VAFAGCSHI	VAFAGYSHI	NetMHCpan	125.5	15.8	0.126	135	0.274	316.575	52.299	0.165	26.39	294.11	15.8	125.5	87.5205423	410.3080144	78.20778752	339.0392667	M1_p20	1.028571429	1.7	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.284	135	0	0	NA	14qB	chr14-19751082-41183403	3	2	1	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr14	29170631	29170631	A	T	ENSMUST00000022567.8	1	ENSMUSG00000021991	missense	F/Y	418	Cacna2d3	ENSMUST00000022567.8:c.1253T>A	ENSMUSP00000022567.7:p.Phe418Tyr	H-2-Kb	9	6	6	ANKGFYTQI	ANKGFFTQI	NetMHCpan	153.5	133	0.866	178	0.348	222.545	313.745	1.41	417.88	298.99	133	153.5	384.6892055	273.5961615	242.8007366	171.4944225	M1_p20	-0.357142857	-0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.352	178	0	0	NA	14qA3	chr14-19751082-41183403	3	2	1	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr14	73216777	73216777	A	C	ENSMUST00000022701.6	1	ENSMUSG00000022105	missense	D/E	560	Rb1	ENSMUST00000022701.6:c.1680T>G	ENSMUSP00000022701.6:p.Asp560Glu	H-2-Kb	9	6	6	LAWLSESPL	LAWLSDSPL	SMM	279.325	421.803	1.51	264	0.311	304.073	461.452	1.518	501.1	305.28	720.4	410.1	421.8033261	279.3251239	407.6148523	302.8656361	M1_p20	-6.34E-17	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.314	264	0	0	NA	14qD3	chr14-53336808-123291781	3	2	1	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr14	50453867	50453867	G	T	ENSMUST00000214792.1	5	ENSMUSG00000095917	missense	A/S	272	Olfr740	ENSMUST00000214792.1:c.814G>T	ENSMUSP00000148916.1:p.Ala272Ser	H-2-Kb	9	11	1	SGMQKLVTL	AGMQKLVTL	NetMHCpan	247.6	429.1	1.733	245	0.265	423.556	718.749	1.697	707.62	313.47	429.1	247.6	968.523137	625.3310593	729.8775406	533.6419961	M1_p20	0.8	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.278	245	0	0	NA	14qC1	chr14-44852972-53132795	3.13208169	3.13208169	0	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr14	37081422	37081422	T	C	ENSMUST00000022337.10	1	ENSMUSG00000021803	missense	T/A	566	Cdhr1	ENSMUST00000022337.10:c.1696A>G	ENSMUSP00000022337.9:p.Thr566Ala	H-2-Kb	9	5	7	LAEVFVALL	LAEVFVTLL	NetMHC	323.57	797.23	2.464	154	0.338	463.56	737.522	1.591	797.23	323.57	1213.4	625.1	677.8131653	507.1191374	571.8077009	420.0006862	M1_p20	2.442857143	2.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.354	154	0	0	NA	14qB	chr14-19751082-41183403	3	2	1	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr13	75878849	75878849	T	G	ENSMUST00000022078.11	1	ENSMUSG00000021589	missense	K/N	468	Rhobtb3	ENSMUST00000022078.11:c.1404A>C	ENSMUSP00000022078.5:p.Lys468Asn	H-2-Kb	9	9	3	VSNETFLSF	VSKETFLSF	SMM	343.645	425.706	1.239	212	0.377	405.045	443.114	1.094	688.38	363.15	407.4	540.2	425.7062242	343.6449768	460.5215948	446.9407979	M1_p20	0.128571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.355	212	0	0	NA	13qC1	chr13-66854181-119495179	3	2	1	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr14	52036009	52036009	A	G	ENSMUST00000214071.1	5	ENSMUSG00000044286	missense	M/T	34	Olfr221	ENSMUST00000214071.1:c.101T>C	ENSMUSP00000150675.1:p.Met34Thr	H-2-Kb	9	6	6	VVFLVTYAI	VVFLVMYAI	NetMHC	404.46	257.9	0.638	153	0.314	474.826	410.59	0.865	257.9	404.46	656.7	462	397.2921646	487.6519891	423.8869047	600.1364431	M1_p20	2.157142857	2.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.329	153	0	0	NA	14qC2	chr14-44852972-53132795	3.13208169	3.13208169	0	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr14	45614188	45614188	T	C	ENSMUST00000087320.12	1	ENSMUSG00000037697	missense	Y/C	511	Ddhd1	ENSMUST00000087320.12:c.1532A>G	ENSMUSP00000084577.5:p.Tyr511Cys	H-2-Kb	9	8	4	IMYCTSPLY	IMYYTSPLY	SMM	100.487	72.629	0.723	256	0.223	436.085	328.486	0.753	479.86	649.71	1452	1280.4	72.6289892	100.4870276	177.1128208	222.4590099	M1_p20	0.085714286	0.642857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.222	256	0	0	NA	14qC1	chr14-44852972-53132795	3.13208169	3.13208169	0	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr16	16673096	16673096	T	C	ENSMUST00000206365.2	3	ENSMUSG00000048101	missense	K/R	295	Olfr19	ENSMUST00000206365.2:c.884A>G	ENSMUSP00000145655.2:p.Lys295Arg	H-2-Db	9	6	6	YSLRNRDLM	YSLRNKDLM	NetMHC	3.3	4.46	1.352	178	0.169	5.853	8.806	1.505	4.46	3.3	5.9	4.6	11.71170164	7.105914866	14.27479894	9.496640546	M1_p20	-0.928571429	-0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.182	178	0	0	NA	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	0.849919264	sgMsh2	cell line
chr15	75597834	75597834	A	G	ENSMUST00000023243.10	1	ENSMUSG00000022579	missense	T/A	133	Gpihbp1	ENSMUST00000023243.10:c.397A>G	ENSMUSP00000023243.4:p.Thr133Ala	H-2-Db	9	10	2	SALCNIPPW	STLCNIPPW	SMMPMBEC	43.709	249.787	5.715	144	0.174	85.973	425.163	4.945	1274.99	88.65	308.8	114.3	541.5268566	83.29520473	249.7870966	43.70891238	M1_p20	0.457142857	0.957142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.206	144	0	0	NA	15qD3	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	1	0.96199653	sgMsh2	cell line
chr16	3592590	3592590	A	G	ENSMUST00000216259.1	5	ENSMUSG00000051003	missense	S/G	65	Olfr161	ENSMUST00000216259.1:c.193A>G	ENSMUSP00000150825.1:p.Ser65Gly	H-2-Db	9	8	4	FFLGNLSFV	FFLSNLSFV	SMM	191.699	80.282	0.419	313	0.24	456.264	114.023	0.25	99.94	647.94	502	1445.2	80.28233585	191.6990674	128.1061561	264.5879126	M1_p20	1.414285714	1.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.235	313	0	0	NA	16qA1	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	sgMsh2	cell line
chr15	83500100	83500100	A	C	ENSMUST00000016897.11	1	ENSMUSG00000022442	missense	F/V	109	Ttll1	ENSMUST00000016897.11:c.325T>G	ENSMUSP00000016897.4:p.Phe109Val	H-2-Kb	8	11	1	VVPVTYML	FVPVTYML	NetMHC	80.92	746.55	9.226	122	0.238	407.435	1764.727	4.331	746.55	80.92	1373	222.3	2156.453014	592.570463	2221.979255	627.6824703	M1_p20	1.5	1.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.237	122	0	0	NA	15qE1	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr15	99470788	99470788	TC	T	ENSMUST00000040313.5	1	ENSMUSG00000037525	FS	D/X	177	Bcdin3d	ENSMUST00000040313.5:c.529del	ENSMUSP00000041809.4:p.Asp177ThrfsTer63	H-2-Kb	8	16	0	SSWPTSPL	NA	NetMHC	82.2	NA	NA	116	0.224	102.864	NA	NA	NA	82.2	NA	97.4	NA	116.3429308	NA	108.3278191	M1_p20	-0.371428571	-0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.241	116	0	0	NA	15qF1	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr16	3592590	3592590	A	G	ENSMUST00000216259.1	5	ENSMUSG00000051003	missense	S/G	65	Olfr161	ENSMUST00000216259.1:c.193A>G	ENSMUSP00000150825.1:p.Ser65Gly	H-2-Kb	8	6	6	MYFFLGNL	MYFFLSNL	NetMHCpan	34	14.7	0.432	313	0.24	89.071	59.088	0.663	49.51	88.66	14.7	34	68.66572344	89.4828896	80.11982647	98.3422182	M1_p20	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.235	313	0	0	NA	16qA1	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	sgMsh2	cell line
chr16	58926453	58926453	T	C	ENSMUST00000205986.3	2	ENSMUSG00000090951	missense	I/M	39	Olfr181	ENSMUST00000205986.3:c.117A>G	ENSMUSP00000145877.2:p.Ile39Met	H-2-Kb	8	5	7	AIYLVTMV	AIYLVTIV	NetMHC	143.87	786.44	5.466	537	0.259	259.507	804.095	3.099	786.44	143.87	1131.3	680.2	620.4974485	238.6382195	821.7505435	280.3754606	M1_p20	2.371428571	2.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.259	537	0	0	NA	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr16	4092284	4092284	AG	A	ENSMUST00000023165.8	1	ENSMUSG00000022521	FS	P/X	1490	Crebbp	ENSMUST00000023165.8:c.4469del	ENSMUSP00000023165.6:p.Pro1490LeufsTer68	H-2-Kb	8	4	8	YIFHCHPL	YIFHCHPP	SMMPMBEC	72.068	1869.563	25.942	96	0.25	81.086	4663.167	57.509	15083.52	169.82	7276.4	77.5	2049.934573	84.67203545	1869.56255	72.06759014	M1_p20	0.8	0.8	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.241	96	0	0	NA	16qA1	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	sgMsh2	cell line
chr15	100190056	100190056	T	C	ENSMUST00000100203.9	1	ENSMUSG00000023026	missense	V/A	957	Dip2b	ENSMUST00000100203.9:c.2870T>C	ENSMUSP00000097777.3:p.Val957Ala	H-2-Kb	8	7	5	ASVMAGNL	ASVMVGNL	NetMHC	249.4	155.85	0.625	227	0.189	304.177	234.725	0.772	155.85	249.4	254.3	361	261.0597994	332.4604589	215.149331	275.892567	M1_p20	1	1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.207	227	0	0	NA	15qF1	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	1	0.966666416	sgMsh2	cell line
chr15	82346154	82346154	AG	A	ENSMUST00000023086.14	1	ENSMUSG00000022452	FS	R/X	24	Smdt1	ENSMUST00000023086.14:c.75del	ENSMUSP00000023086.8:p.Arg26GlyfsTer36	H-2-Kb	8	36	0	SSLAAAPF	NA	NetMHC	289.68	NA	NA	43	0.256	412.027	NA	NA	NA	289.68	NA	391.8	NA	461.0414792	NA	432.2549746	M1_p20	1.371428571	1.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.26	43	0	0	NA	15qE1	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	2	1	sgMsh2	cell line
chr15	55084094	55084094	A	G	ENSMUST00000023059.12	1	ENSMUSG00000022422	missense	V/A	230	Dscc1	ENSMUST00000023059.12:c.689T>C	ENSMUSP00000023059.6:p.Val230Ala	H-2-Kb	8	6	6	WSLDRAPL	WSLDRVPL	SMMPMBEC	220.668	636.414	2.884	88	0.239	309.984	790.887	2.551	1192.99	347.86	795.2	403.9	786.5747483	272.1071791	636.4144033	220.6683258	M1_p20	-0.142857143	-0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.233	88	0	0	NA	15qD1	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr16	3592523	3592523	GA	G	ENSMUST00000216259.1	5	ENSMUSG00000051003	FS	G/X	42	Olfr161	ENSMUST00000216259.1:c.128del	ENSMUSP00000150825.1:p.Asn43ThrfsTer46	H-2-Kb	8	47	0	LSLRYWPF	NA	NetMHCpan	130.4	NA	NA	195	0.241	210.41	NA	NA	NA	465.62	NA	130.4	NA	248.7367755	NA	172.0838049	M1_p20	-0.357142857	-0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.234	195	0	0	NA	16qA1	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	sgMsh2	cell line
chr16	58915901	58915901	GA	G	ENSMUST00000171656.2	2	ENSMUSG00000090629	FS	S/X	247	Olfr180	ENSMUST00000171656.2:c.739del	ENSMUSP00000128358.1:p.Ser247LeufsTer31	H-2-Kb	8	31	0	KTYQWLYF	NA	NetMHCpan	200.7	NA	NA	242	0.281	382.912	NA	NA	NA	489.31	NA	200.7	NA	445.3895263	NA	320.4350395	M1_p20	-0.157142857	-0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.267	242	0	0	NA	16qC1.2	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr16	58915901	58915901	GA	G	ENSMUST00000171656.2	2	ENSMUSG00000090629	FS	S/X	247	Olfr180	ENSMUST00000171656.2:c.739del	ENSMUSP00000128358.1:p.Ser247LeufsTer31	H-2-Kb	8	29	0	VIKTYQWL	NA	SMM	154.433	NA	NA	242	0.281	282.366	NA	NA	NA	556.53	NA	386.6	NA	154.4329616	NA	178.1312026	M1_p20	-0.285714286	-0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.267	242	0	0	NA	16qC1.2	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr15	102107034	102107034	C	A	ENSMUST00000169627.8	1	ENSMUSG00000037003	missense	L/I	124	Tns2	ENSMUST00000169627.8:c.370C>A	ENSMUSP00000129146.1:p.Leu124Ile	H-2-Kb	8	4	8	RSFSLDPI	RSFSLDPL	SMMPMBEC	399.705	69.621	0.174	47	0.255	447.918	66.195	0.148	61.92	575.14	134.3	488.7	62.76824703	407.1364636	69.6209588	399.7053856	M1_p20	0.628571429	0.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.242	47	0	0	NA	15qF2	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr16	32961669	32961669	A	G	ENSMUST00000135193.8	5	ENSMUSG00000022801	missense	Y/C	271	Lrch3	ENSMUST00000135193.8:c.812A>G	ENSMUSP00000130708.1:p.Tyr271Cys	H-2-Kb	8	5	7	KIHIFKCL	KIHIFKYL	SMMPMBEC	256.886	92.628	0.361	181	0.293	319.381	76.184	0.239	59.74	598.73	59.4	324.9	102.9769442	313.8629122	92.62751223	256.8857419	M1_p20	1.571428571	1.571428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.295	181	0	0	NA	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr16	3592590	3592590	A	G	ENSMUST00000216259.1	5	ENSMUSG00000051003	missense	S/G	65	Olfr161	ENSMUST00000216259.1:c.193A>G	ENSMUSP00000150825.1:p.Ser65Gly	H-2-Kb	9	5	7	PMYFFLGNL	PMYFFLSNL	SMM	22.862	15.35	0.671	313	0.24	43.133	26.875	0.623	34.5	54.11	28.5	71.6	15.35005727	22.86177783	25.24933823	32.15511003	M1_p20	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.235	313	0	0	NA	16qA1	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	sgMsh2	cell line
chr15	98126427	98126427	G	T	ENSMUST00000051226.7	1	ENSMUSG00000033065	missense	G/C	439	Pfkm	ENSMUST00000051226.7:c.1315G>T	ENSMUSP00000059801.6:p.Gly439Cys	H-2-Kb	9	7	5	VVHDCFEGL	VVHDGFEGL	NetMHC	110.43	431.59	3.908	187	0.187	228.926	428.227	1.871	431.59	110.43	423.6	235.2	439.6529586	227.0439846	424.864065	230.8075441	M1_p20	-0.214285714	0.5	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.203	187	0	0	NA	15qF1	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	1	0.947986872	sgMsh2	cell line
chr16	20686853	20686853	A	G	ENSMUST00000115460.7	5	ENSMUSG00000045983	missense	I/V	1292	Eif4g1	ENSMUST00000115460.7:c.3874A>G	ENSMUSP00000111120.1:p.Ile1292Val	H-2-Kb	9	11	1	VAREHMGRL	IAREHMGRL	SMMPMBEC	106.967	141.661	1.324	138	0.348	116.472	149.63	1.285	127.43	113.79	157.6	170.6	175.4324789	119.1543769	141.6609011	106.9670454	M1_p20	-1.485714286	-0.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.349	138	0	0	NA	16qB1	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	2	1	sgMsh2	cell line
chr16	4684243	4684243	C	T	ENSMUST00000060067.11	1	ENSMUSG00000004069	missense	T/I	37	Dnaja3	ENSMUST00000060067.11:c.110C>T	ENSMUSP00000053842.5:p.Thr37Ile	H-2-Kb	9	9	3	VAISLCRKL	VATSLCRKL	NetMHC	156.74	846.78	5.402	14	0.214	305.989	989.482	3.234	846.78	156.74	1483.1	207.3	957.4365443	404.6783774	1021.527353	411.386466	M1_p20	0.771428571	1.642857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.273	14	0	0	NA	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr15	76715854	76715854	C	A	ENSMUST00000049956.4	1	ENSMUSG00000033707	missense	A/S	362	Lrrc24	ENSMUST00000049956.4:c.1084G>T	ENSMUSP00000061906.4:p.Ala362Ser	H-2-Kb	9	10	2	KSRVPFHLL	KARVPFHLL	NetMHC	220.18	419.14	1.904	147	0.252	326.475	464.375	1.422	419.14	220.18	451.1	259.3	477.6502397	393.6497682	885.62527	703.4771574	M1_p20	0.757142857	0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	147	0	0	NA	15qD3	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr15	63824978	63824978	T	C	ENSMUST00000188691.1	1	ENSMUSG00000056293	missense	K/R	448	Gsdmc2	ENSMUST00000188691.1:c.1343A>G	ENSMUSP00000140487.1:p.Lys448Arg	H-2-Kb	9	4	8	STWDLEARM	STWDLEAKM	NetMHC	270.97	630.27	2.326	490	0.247	393.946	686.739	1.743	630.27	270.97	949.5	462.3	743.2073569	407.4834739	574.4470454	380.4083139	M1_p20	-0.7	-0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.248	490	0	0	NA	15qD1	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr15	76622252	76622252	GT	G	ENSMUST00000078803.4	1	ENSMUSG00000115987	FS	N/X	216	Vps28	ENSMUST00000078803.4:c.647del	ENSMUSP00000077856.3:p.Asn216ThrfsTer?	H-2-Kb	9	5	7	SAYNAFTAS	SAYNAFNRF	SMM	204.226	61.96	0.303	296	0.206	329.815	52.55	0.159	43.14	281.84	34.5	452.4	61.95979897	204.225515	87.54876014	377.7896015	M1_p20	0.014285714	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.213	296	0	0	NA	15qD3	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	1	0.994685732	sgMsh2	cell line
chr16	58915901	58915901	GA	G	ENSMUST00000171656.2	2	ENSMUSG00000090629	FS	S/X	247	Olfr180	ENSMUST00000171656.2:c.739del	ENSMUSP00000128358.1:p.Ser247LeufsTer31	H-2-Kb	9	31	0	KTYQWLYFI	NA	NetMHCpan	171.2	NA	NA	242	0.281	384.332	NA	NA	NA	307.23	NA	171.2	NA	461.4344339	NA	521.4948213	M1_p20	0.585714286	0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.267	242	0	0	NA	16qC1.2	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr16	3592523	3592523	GA	G	ENSMUST00000216259.1	5	ENSMUSG00000051003	FS	G/X	42	Olfr161	ENSMUST00000216259.1:c.128del	ENSMUSP00000150825.1:p.Asn43ThrfsTer46	H-2-Kb	9	39	0	WMYASPPPL	NA	NetMHCpan	187.9	NA	NA	195	0.241	209.738	NA	NA	NA	330.1	NA	187.9	NA	192.357888	NA	227.1171867	M1_p20	-0.185714286	-0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.234	195	0	0	NA	16qA1	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	sgMsh2	cell line
chr16	43898221	43898221	C	A	ENSMUST00000132859.7	5	ENSMUSG00000022701	missense	S/Y	4	Ccdc191	ENSMUST00000132859.7:c.11C>A	ENSMUSP00000116078.1:p.Ser4Tyr	H-2-Kb	9	2	3	MTYMKKELV	MTSMKKELV	NetMHC	416.43	10480.62	25.168	495	0.206	433.746	8552.231	19.717	10480.62	416.43	14641.3	616.9	6623.84254	440.6664633	5600.799166	426.8251484	M1_p20	-0.385714286	-0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.212	495	0	0	NA	16qB4	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	0.990015846	sgMsh2	cell line
chr16	58926453	58926453	T	C	ENSMUST00000205986.3	2	ENSMUSG00000090951	missense	I/M	39	Olfr181	ENSMUST00000205986.3:c.117A>G	ENSMUSP00000145877.2:p.Ile39Met	H-2-Kb	9	3	9	FSAIYLVTM	FSAIYLVTI	SMM	339.711	641.372	1.888	537	0.259	388.31	695.236	1.79	910.5	521.58	749.1	436.8	641.3720055	339.7113053	579.7623384	339.8208329	M1_p20	2.028571429	2.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.259	537	0	0	NA	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr16	46395206	46395206	G	A	ENSMUST00000023335.12	1	ENSMUSG00000022656	missense	R/C	475	Nectin3	ENSMUST00000023335.12:c.1423C>T	ENSMUSP00000023335.6:p.Arg475Cys	H-2-Kb	9	11	1	CMCPLYSQM	RMCPLYSQM	SMMPMBEC	273.684	323.78	1.183	294	0.299	454.615	534.381	1.175	662.74	603.66	587.8	609	480.961153	305.5694975	323.779986	273.6843727	M1_p20	0.142857143	1	TRUE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.329	294	0	0	NA	16qB5	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	2	1	sgMsh2	cell line
chr17	56632320	56632320	T	G	ENSMUST00000112979.3	1	ENSMUSG00000040828	missense	F/V	50	Catsperd	ENSMUST00000112979.3:c.148T>G	ENSMUSP00000108603.2:p.Phe50Val	H-2-Db	9	5	7	YAFPNTVVL	YAFPNTFVL	NetMHCpan	9.1	7.6	0.835	322	0.202	33.615	30.922	0.92	12.57	10.27	7.6	9.1	49.27424743	62.03260224	49.83907806	56.96000254	M1_p20	1.314285714	1.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.199	322	0	0	NA	17qD	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	0.929307328	sgMsh2	cell line
chr16	66953325	66953325	A	C	ENSMUST00000128168.2	5	ENSMUSG00000064115	missense	L/V	4	Cadm2	ENSMUST00000128168.2:c.10T>G	ENSMUSP00000134554.1:p.Leu4Val	H-2-Db	9	2	3	FFVCNLSLV	FFLCNLSLV	SMM	212.628	112.362	0.528	204	0.304	366.157	205.398	0.561	212.84	383.52	712	1231.7	112.3621395	212.6277776	197.9566064	348.7947987	M1_p20	2.028571429	2.028571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.272	204	0	0	NA	16qC2	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr16	59543197	59543197	AT	A	ENSMUST00000172910.2	5	ENSMUSG00000022723	FS	K/X	2441	Crybg3	ENSMUST00000172910.2:c.7323del	ENSMUSP00000156047.1:p.Lys2441AsnfsTer11	H-2-Db	9	7	5	AAEMNHCIL	NA	NetMHCpan	226	NA	NA	41	0.195	388.867	NA	NA	NA	644.6	NA	226	NA	423.2724481	NA	354.4622582	M1_p20	0.357142857	0.357142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.198	41	0	0	NA	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	0.924637441	sgMsh2	cell line
chr17	28974308	28974308	CA	C	ENSMUST00000119274.2	1	ENSMUSG00000024006	FS	F/X	382	Stk38	ENSMUST00000119274.2:c.1146del	ENSMUSP00000113657.1:p.Phe382LeufsTer42	H-2-Kb	8	38	0	TSMNFQSL	NA	NetMHC	7.12	NA	NA	57	0.193	20.588	NA	NA	NA	7.12	NA	9.5	NA	35.46010359	NA	31.67670499	M1_p20	-0.014285714	-0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.193	57	0	0	NA	17qA3.3	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	0.901288011	sgMsh2	cell line
chr17	20993832	20993833	GA	AT	ENSMUST00000237195.1	NA	ENSMUSG00000045575	missense	F/Y	285	Vmn1r233	ENSMUST00000237195.1:c.854_855delinsAT	ENSMUSP00000158452.1:p.Phe285Tyr	H-2-Kb	8	7	5	SSLVYPTV	SSLVFPTV	NetMHC	13.54	10.29	0.76	239	0.264	42.037	33.876	0.806	10.29	13.54	22.8	28.9	44.95106648	55.17470248	51.72970479	63.49506908	M1_p20	1.114285714	1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.281	239	0	0	NA	17qA3.2	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr17	37701005	37701005	AT	A	ENSMUST00000213732.1	5	ENSMUSG00000059964	FS	F/X	112	Olfr119	ENSMUST00000213732.1:c.339del	ENSMUSP00000150099.1:p.Phe113LeufsTer3	H-2-Kb	8	5	8	QMFFFTFL	QMFFFTFF	NetMHCpan	9.9	98.7	9.97	521	0.251	18.421	250.269	13.586	184.5	17.4	98.7	9.9	316.0385059	19.44195797	349.7357273	27.84453695	M1_p20	2.314285714	2.314285714	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.26	521	0	0	NA	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr17	37382656	37382656	T	C	ENSMUST00000215518.1	5	ENSMUSG00000094884	missense	Y/H	30	Olfr105-ps	ENSMUST00000215518.1:c.88T>C	ENSMUSP00000154753.1:p.Tyr30His	H-2-Kb	8	8	4	LAMHFINV	LAMYFINV	NetMHCpan	38.2	31.6	0.827	634	0.24	115.449	106.2	0.92	39.92	67.69	31.6	38.2	226.3288934	224.7708563	172.480499	163.2074578	M1_p20	1.214285714	1.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.253	634	0	0	NA	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr17	38082114	38082114	A	G	ENSMUST00000216523.1	5	ENSMUSG00000043312	missense	M/T	288	Olfr131	ENSMUST00000216523.1:c.863T>C	ENSMUSP00000150562.1:p.Met288Thr	H-2-Kb	8	8	4	ITPTLNPL	ITPMLNPL	NetMHC	80.3	53.48	0.666	353	0.252	136.287	121.388	0.891	53.48	80.3	100.3	182.4	146.4670721	126.107234	142.4754378	146.4670721	M1_p20	-0.071428571	0.028571429	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.251	353	0	0	NA	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr16	90767027	90767027	CA	C	ENSMUST00000140920.1	5	ENSMUSG00000039929	FS	L/X	1616	Urb1	ENSMUST00000140920.1:c.4847del	ENSMUSP00000114717.1:p.Leu1616ArgfsTer37	H-2-Kb	8	35	0	MTPAFFSI	NA	NetMHCpan	58.1	NA	NA	74	0.311	155.093	NA	NA	NA	108.47	NA	58.1	NA	201.7158386	NA	223.738128	M1_p20	1.257142857	1.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.306	74	0	0	NA	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr17	56777470	56777470	T	C	ENSMUST00000002444.14	1	ENSMUSG00000024206	missense	N/S	668	Rfx2	ENSMUST00000002444.14:c.2003A>G	ENSMUSP00000002444.7:p.Asn668Ser	H-2-Kb	8	6	6	VMGEFSDL	VMGEFNDL	NetMHC	113.49	324.64	2.861	147	0.204	192.202	326.647	1.699	324.64	113.49	576.2	261.7	313.8629122	193.9724271	328.6548155	190.4320313	M1_p20	0.042857143	0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.206	147	0	0	NA	17qD	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	0.96199653	sgMsh2	cell line
chr17	42592968	42592968	TA	T	ENSMUST00000068355.7	1	ENSMUSG00000043972	FS	Y/X	159	Opn5	ENSMUST00000068355.7:c.475del	ENSMUSP00000063542.6:p.Tyr159MetfsTer43	H-2-Kb	8	5	7	LAVIWAML	LAVIWAYA	NetMHCpan	147.2	3567.3	24.234	44	0.341	206.513	4062.47	19.672	6717.72	182.49	3567.3	147.2	4557.639811	321.1737185	2604.593785	230.5366617	M1_p20	2.442857143	2.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.334	44	0	0	NA	17qB3	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	2	1	sgMsh2	cell line
chr17	40228805	40228805	A	G	ENSMUST00000026499.5	1	ENSMUSG00000025433	missense	V/A	167	Crisp3	ENSMUST00000026499.5:c.500T>C	ENSMUSP00000026499.5:p.Val167Ala	H-2-Kb	8	10	2	YACRYCPV	YVCRYCPV	SMMPMBEC	174.478	161.339	0.925	687	0.261	239.579	312.449	1.304	429.13	286.52	494.4	303	195.7672319	192.6371303	161.3392375	174.4777291	M1_p20	0.514285714	0.514285714	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.251	687	0	0	NA	17qB2	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr17	38304994	38304994	T	C	ENSMUST00000213505.1	5	ENSMUSG00000054940	missense	T/A	156	Olfr137	ENSMUST00000213505.1:c.466A>G	ENSMUSP00000150173.1:p.Thr156Ala	H-2-Kb	8	7	5	CGFTASAL	CGFTTSAL	SMM	193.972	284.931	1.469	225	0.2	240.585	312.177	1.298	583.32	395.88	277.8	199.5	284.9311953	193.9724271	339.4220093	281.6696149	M1_p20	1.185714286	1.185714286	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	225	0	0	NA	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr17	56424157	56424157	GC	G	ENSMUST00000067538.5	1	ENSMUSG00000013236	FS	G/X	1083	Ptprs	ENSMUST00000067538.5:c.3248del	ENSMUSP00000064048.5:p.Gly1083AlafsTer42	H-2-Kb	8	43	0	STCLMARV	NA	SMMPMBEC	182.701	NA	NA	121	0.289	336.692	NA	NA	NA	464.58	NA	1473.7	NA	208.8045702	NA	182.7006111	M1_p20	1.285714286	1.285714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.275	121	0	0	NA	17qD	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr17	37751964	37751964	A	G	ENSMUST00000174675.3	5	ENSMUSG00000060017	missense	I/V	37	Olfr121	ENSMUST00000174675.3:c.109A>G	ENSMUSP00000133865.3:p.Ile37Val	H-2-Kb	8	4	8	CFLLFTLV	CFLLFTLI	SMM	253.945	461.041	1.816	869	0.25	479.578	724.227	1.51	850.4	581.81	2002	2533.9	461.0414792	253.9451951	598.0534499	377.3462166	M1_p20	2.928571429	2.928571429	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.245	869	0	0	NA	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr17	30761096	30761096	GT	G	ENSMUST00000236140.1	NA	ENSMUSG00000033826	FS	F/X	3035	Dnah8	ENSMUST00000236140.1:c.9108del	ENSMUSP00000157469.1:p.Phe3036LeufsTer5	H-2-Kb	8	5	8	TSLDLVFL	TSLDLVFF	SMM	245.89	3997.054	16.255	177	0.181	452.067	3837.777	8.489	5159.69	706.65	3678.5	633.9	3997.053856	245.8895091	3394.220093	270.2340064	M1_p20	2.014285714	2.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.172	177	0	0	NA	17qA3.3	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	0.803220404	sgMsh2	cell line
chr17	25937063	25937063	G	T	ENSMUST00000097368.9	1	ENSMUSG00000025728	missense	F/L	130	Pigq	ENSMUST00000097368.9:c.390C>A	ENSMUSP00000094981.3:p.Phe130Leu	H-2-Kb	8	10	2	ILYDQRKL	IFYDQRKL	SMM	308.845	105.133	0.34	95	0.253	421.544	297.252	0.705	424.39	1362.89	457.8	464	105.1332282	308.8445912	170.1139779	379.0879676	M1_p20	-1.3	-1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	95	0	0	NA	17qA3.3	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr16	59361855	59361855	C	T	ENSMUST00000208875.2	2	ENSMUSG00000095706	missense	R/H	121	Olfr209	ENSMUST00000208875.2:c.362G>A	ENSMUSP00000147068.1:p.Arg121His	H-2-Kb	9	7	5	MAYDHYVAI	MAYDRYVAI	NetMHCpan	10.8	14.4	1.333	709	0.118	29.47	30.259	1.027	27.08	22.19	14.4	10.8	39.27443988	40.65462879	33.43874735	36.74937861	M1_p20	0.171428571	0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.121	709	0	0	NA	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	0.565056214	sgMsh2	cell line
chr17	37701005	37701005	AT	A	ENSMUST00000213732.1	5	ENSMUSG00000059964	FS	F/X	112	Olfr119	ENSMUST00000213732.1:c.339del	ENSMUSP00000150099.1:p.Phe113LeufsTer3	H-2-Kb	9	4	9	TQMFFFTFL	TQMFFFTFF	NetMHCpan	14.3	117.3	8.203	521	0.251	93.963	252.605	2.688	250.38	40.61	117.3	14.3	271.7127388	161.1053638	254.8296748	147.3160278	M1_p20	2.314285714	2.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.26	521	0	0	NA	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr17	28974308	28974308	CA	C	ENSMUST00000119274.2	1	ENSMUSG00000024006	FS	F/X	382	Stk38	ENSMUST00000119274.2:c.1146del	ENSMUSP00000113657.1:p.Phe382LeufsTer42	H-2-Kb	9	38	0	TSMNFQSLI	NA	NetMHC	41.44	NA	NA	57	0.193	157.091	NA	NA	NA	41.44	NA	54.1	NA	260.0818226	NA	263.1782532	M1_p20	0.742857143	0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.193	57	0	0	NA	17qA3.3	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	0.901288011	sgMsh2	cell line
chr17	20994614	20994614	T	C	ENSMUST00000237195.1	NA	ENSMUSG00000045575	missense	I/V	25	Vmn1r233	ENSMUST00000237195.1:c.73A>G	ENSMUSP00000158452.1:p.Ile25Val	H-2-Kb	9	3	9	VIILFQTMV	VIILFQTMI	NetMHC	46.04	63.11	1.371	278	0.284	142.11	130.172	0.916	63.11	46.04	89.3	129.3	171.044849	154.920896	194.6480243	188.4733717	M1_p20	1.857142857	2.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.27	278	0	0	NA	17qA3.2	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr17	13225949	13225949	T	C	ENSMUST00000080647.4	1	ENSMUSG00000073458	missense	C/R	138	Smok2a	ENSMUST00000080647.4:c.412T>C	ENSMUSP00000094432.2:p.Cys138Arg	H-2-Kb	9	8	4	INYRHNQGI	INYCHNQGI	NetMHCpan	30	54.9	1.83	1030	0.125	105.887	125.761	1.188	188.04	80.78	54.9	30	133.6934098	144.9138851	117.8284053	130.9935766	M1_p20	-1.7	-1.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.121	1030	0	0	NA	17qA1	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	0.565056214	sgMsh2	cell line
chr17	37751964	37751964	A	G	ENSMUST00000174675.3	5	ENSMUSG00000060017	missense	I/V	37	Olfr121	ENSMUST00000174675.3:c.109A>G	ENSMUSP00000133865.3:p.Ile37Val	H-2-Kb	9	11	1	VLLMFLVSL	ILLMFLVSL	NetMHC	127.87	166.59	1.303	869	0.25	185.568	235.147	1.267	166.59	127.87	243.7	206.3	294.5167504	200.0368468	226.5948317	171.0999962	M1_p20	2.785714286	3.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.245	869	0	0	NA	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr17	32774731	32774731	T	C	ENSMUST00000159086.9	1	ENSMUSG00000024298	missense	K/R	490	Zfp871	ENSMUST00000159086.9:c.1469A>G	ENSMUSP00000127178.1:p.Lys490Arg	H-2-Kb	9	7	5	SQFQRHKAL	SQFQKHKAL	NetMHC	137.22	270.99	1.975	187	0.209	206.635	341.188	1.651	270.99	137.22	269.6	151.3	460.3731641	307.6876041	411.386466	261.9690589	M1_p20	-0.957142857	-0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.225	187	0	0	NA	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr17	37701005	37701005	AT	A	ENSMUST00000213732.1	5	ENSMUSG00000059964	FS	F/X	112	Olfr119	ENSMUST00000213732.1:c.339del	ENSMUSP00000150099.1:p.Phe113LeufsTer3	H-2-Kb	9	5	8	QMFFFTFLV	QMFFFTFFG	SMM	56.378	416.016	7.379	521	0.251	130.663	1702.349	13.029	3181.25	152.62	2823.6	205	416.0159675	56.37804345	581.0988286	108.7051201	M1_p20	2.642857143	2.642857143	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.26	521	0	0	NA	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr16	59361855	59361855	C	T	ENSMUST00000208875.2	2	ENSMUSG00000095706	missense	R/H	121	Olfr209	ENSMUST00000208875.2:c.362G>A	ENSMUSP00000147068.1:p.Arg121His	H-2-Kb	9	5	7	VAMAYDHYV	VAMAYDRYV	NetMHC	188.42	105.62	0.561	709	0.118	314.122	324.279	1.032	105.62	188.42	254	254.9	394.5572246	373.3447082	422.9119919	381.2852457	M1_p20	-0.2	0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.121	709	0	0	NA	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	0.565056214	sgMsh2	cell line
chr17	37382656	37382656	T	C	ENSMUST00000215518.1	5	ENSMUSG00000094884	missense	Y/H	30	Olfr105-ps	ENSMUST00000215518.1:c.88T>C	ENSMUSP00000154753.1:p.Tyr30His	H-2-Kb	9	7	5	VLAMHFINV	VLAMYFINV	NetMHCpan	171.6	152.5	0.889	634	0.24	293.012	230.854	0.788	138.03	197.65	152.5	171.6	338.9299909	422.7756832	309.2074862	388.3738676	M1_p20	1.214285714	2.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.253	634	0	0	NA	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr17	28974308	28974308	CA	C	ENSMUST00000119274.2	1	ENSMUSG00000024006	FS	F/X	382	Stk38	ENSMUST00000119274.2:c.1146del	ENSMUSP00000113657.1:p.Phe382LeufsTer42	H-2-Kb	9	40	0	MNFQSLIFL	NA	NetMHCpan	122.5	NA	NA	57	0.193	305.221	NA	NA	NA	257.17	NA	122.5	NA	353.2726369	NA	391.0659467	M1_p20	1.914285714	1.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.193	57	0	0	NA	17qA3.3	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	0.901288011	sgMsh2	cell line
chr17	56632320	56632320	T	G	ENSMUST00000112979.3	1	ENSMUSG00000040828	missense	F/V	50	Catsperd	ENSMUST00000112979.3:c.148T>G	ENSMUSP00000108603.2:p.Phe50Val	H-2-Kb	9	3	9	LFYAFPNTV	LFYAFPNTF	NetMHCpan	233	338.6	1.453	322	0.202	281.738	333.442	1.184	338.69	258.61	338.6	233	228.6177783	304.8667072	328.2842143	424.864065	M1_p20	0.242857143	0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.199	322	0	0	NA	17qD	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	0.929307328	sgMsh2	cell line
chr17	19053653	19053653	C	A	ENSMUST00000170424.2	5	ENSMUSG00000096717	missense	S/Y	54	Vmn2r98	ENSMUST00000170424.2:c.161C>A	ENSMUSP00000131261.1:p.Ser54Tyr	H-2-Kb	9	7	5	HTFYYLKKM	HTFYSLKKM	NetMHCpan	162.4	2676.5	16.481	312	0.25	315.655	1812.209	5.741	2171.47	303.78	2676.5	162.4	1432.550696	345.2311699	1452.947761	327.5291816	M1_p20	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.254	312	0	0	NA	17qA3.2	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr17	20993832	20993833	GA	AT	ENSMUST00000237195.1	NA	ENSMUSG00000045575	missense	F/Y	285	Vmn1r233	ENSMUST00000237195.1:c.854_855delinsAT	ENSMUSP00000158452.1:p.Phe285Tyr	H-2-Kb	9	9	3	LVYPTVCPF	LVFPTVCPF	NetMHCpan	389.9	626.9	1.608	239	0.264	445.555	700.779	1.573	594.84	409.04	626.9	389.9	774.6579817	482.0698829	995.9785837	658.0365246	M1_p20	0.614285714	1.585714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.281	239	0	0	NA	17qA3.2	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr18	37680939	37680939	G	T	ENSMUST00000192931.1	1	ENSMUSG00000103037	missense	S/I	161	Pcdhgb1	ENSMUST00000192931.1:c.482G>T	ENSMUSP00000141348.1:p.Ser161Ile	H-2-Db	9	3	9	NSLKMYTVI	NSLKMYTVS	NetMHC	158.89	19903.22	125.264	260	0.492	356.594	9153.28	25.669	19903.22	158.89	14990.9	524.3	2996.539453	391.3992598	3315.660076	321.7881152	M1_p20	1.214285714	1.214285714	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.494	260	0	0	NA	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.202897461	NA	2	1	sgMsh2	cell line
chr18	37021442	37021442	T	C	ENSMUST00000047614.3	1	ENSMUSG00000103310	missense	Y/H	405	Pcdha12	ENSMUST00000047614.3:c.1213T>C	ENSMUSP00000047609.1:p.Tyr405His	H-2-Db	9	5	7	STFKNYHSL	STFKNYYSL	NetMHCpan	36.5	34.8	0.953	261	0.272	221.131	155.833	0.705	81.22	180.1	34.8	36.5	270.7821299	272.659102	230.4464382	262.162156	M1_p20	-0.871428571	-0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.275	261	0	0	NA	18qB2	chr18-5046666-88869177	3	2	1	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr17	84697532	84697532	T	C	ENSMUST00000045714.14	1	ENSMUSG00000024254	missense	F/L	576	Abcg8	ENSMUST00000045714.14:c.1726T>C	ENSMUSP00000035246.8:p.Phe576Leu	H-2-Db	9	10	2	GLMINLDNL	GFMINLDNL	NetMHCpan	367.1	1384.4	3.771	114	0.289	482.343	875.659	1.815	1955.18	698.93	1384.4	367.1	313.0545354	536.5621085	366.91883	428.1244195	M1_p20	0.5	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.264	114	0	0	NA	17qE4	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr18	3426897	3426897	T	C	ENSMUST00000162301.7	1	ENSMUSG00000024231	missense	I/T	509	Cul2	ENSMUST00000162301.7:c.1526T>C	ENSMUSP00000125403.1:p.Ile509Thr	H-2-Kb	8	7	5	ISFQTYVL	ISFQIYVL	NetMHC	13.88	29.47	2.123	159	0.182	26.521	33.088	1.248	29.47	13.88	17.6	19.1	42.53436955	34.73281635	36.70624846	33.94220093	M1_p20	0.642857143	0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.181	159	0	0	NA	18qA1	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	sgMsh2	cell line
chr17	84697532	84697532	T	C	ENSMUST00000045714.14	1	ENSMUSG00000024254	missense	F/L	576	Abcg8	ENSMUST00000045714.14:c.1726T>C	ENSMUSP00000035246.8:p.Phe576Leu	H-2-Kb	8	4	8	SFYLTAGL	SFYLTAGF	NetMHC	15.37	172.25	11.207	114	0.289	31.057	352.868	11.362	172.25	15.37	298.6	61	482.7696948	29.69887511	407.1364636	32.41455024	M1_p20	1.4	1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.264	114	0	0	NA	17qE4	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr18	61697778	61697778	T	C	ENSMUST00000025472.6	1	ENSMUSG00000024579	missense	Y/C	341	Pcyox1l	ENSMUST00000025472.6:c.1022A>G	ENSMUSP00000025472.1:p.Tyr341Cys	H-2-Kb	8	5	7	VSLVHGCL	VSLVHGYL	NetMHC	42.26	7.17	0.17	112	0.277	48.333	15.42	0.319	7.17	42.26	15	81.6	15.83944645	48.27696948	17.44777291	48.38825938	M1_p20	1.414285714	1.471428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.27	112	0	0	NA	18qE1	chr18-5046666-88869177	3	2	1	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr18	75519813	75519813	T	C	ENSMUST00000165559.2	5	ENSMUSG00000052928	missense	K/E	458	Ctif	ENSMUST00000165559.2:c.1372A>G	ENSMUSP00000129974.1:p.Lys458Glu	H-2-Kb	8	5	7	FAFTAAEL	FAFTAAKL	NetMHC	81.29	76.52	0.941	34	0.176	124.469	90.585	0.728	76.52	81.29	76	111.3	104.6501849	137.6385219	105.6185011	153.0171117	M1_p20	1.114285714	1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.239	34	0	0	NA	18qE3	chr18-5046666-88869177	3	2	1	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr18	56491908	56491908	A	C	ENSMUST00000237355.1	NA	ENSMUSG00000001700	missense	I/L	358	Gramd3	ENSMUST00000237355.1:c.1072A>C	ENSMUSP00000157710.1:p.Ile358Leu	H-2-Kb	8	4	8	AIIVCALL	AIIVCALI	NetMHC	138.87	1449.26	10.436	112	0.241	182.51	1386.404	7.596	1449.26	138.87	2402.7	511.3	1323.548926	204.0515979	924.1447486	160.9681675	M1_p20	3.585714286	3.585714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.246	112	0	0	NA	18qD3	chr18-5046666-88869177	3	2	1	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr19	5982837	5982837	A	C	ENSMUST00000041827.7	1	ENSMUSG00000037451	missense	S/A	267	Slc22a20	ENSMUST00000041827.7:c.799T>G	ENSMUSP00000049473.7:p.Ser267Ala	H-2-Kb	8	6	6	VFFLYAWW	VFFLYSWW	SMM	21.22	47.945	2.259	57	0.193	168.912	331.805	1.964	564.13	295.97	4006.7	4116.2	47.94463315	21.21973715	99.48096742	41.85429201	M1_p20	1.157142857	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.222	57	0	0	NA	19qA	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	sgMsh2	cell line
chr17	83477824	83477824	T	C	ENSMUST00000096766.11	1	ENSMUSG00000032624	missense	L/P	875	Eml4	ENSMUST00000096766.11:c.2624T>C	ENSMUSP00000094528.4:p.Leu875Pro	H-2-Kb	8	5	7	SIIQWKPV	SIIQWKLV	SMMPMBEC	267.141	735.766	2.754	156	0.256	337.819	1037.14	3.07	1227.56	355.94	1662.3	657.1	846.7203545	319.6980594	735.7664827	267.1406633	M1_p20	0.471428571	0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.257	156	0	0	NA	17qE4	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr18	38283868	38283868	A	T	ENSMUST00000025311.7	1	ENSMUSG00000024440	missense	I/N	68	Pcdh12	ENSMUST00000025311.7:c.203T>A	ENSMUSP00000025311.5:p.Ile68Asn	H-2-Kb	8	5	7	AGDAFQNL	AGDAFQIL	SMM	167.009	1136.946	6.808	55	0.236	278.431	2749.302	9.874	5473.8	362.89	4050.7	944.1	1136.946424	167.0090478	1447.904774	193.9724271	M1_p20	-0.357142857	-0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.257	55	0	0	NA	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr18	37941753	37941753	A	G	ENSMUST00000043498.8	1	ENSMUSG00000024454	missense	S/P	312	Hdac3	ENSMUST00000043498.8:c.934T>C	ENSMUSP00000037981.7:p.Ser312Pro	H-2-Kb	8	6	6	WTYETPLL	WTYETSLL	SMMPMBEC	359.534	238.638	0.664	373	0.228	430.684	272.762	0.633	289.23	493.46	348.5	494.9	256.2949211	367.908651	238.6382195	359.5340277	M1_p20	-0.028571429	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.236	373	0	0	NA	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr19	4891072	4891072	G	A	ENSMUST00000053506.7	1	ENSMUSG00000006464	missense	P/L	538	Bbs1	ENSMUST00000053506.7:c.1613C>T	ENSMUSP00000055321.6:p.Pro538Leu	H-2-Kb	8	6	6	AFFKVLLL	AFFKVPLL	SMM	290.228	256.886	0.885	123	0.211	373.08	290.889	0.78	370.92	622.91	210.1	389.1	256.8857419	290.2284617	324.8927349	357.0590129	M1_p20	2.471428571	2.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.222	123	0	0	NA	19qA	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	sgMsh2	cell line
chr18	37021442	37021442	T	C	ENSMUST00000047614.3	1	ENSMUSG00000103310	missense	Y/H	405	Pcdha12	ENSMUST00000047614.3:c.1213T>C	ENSMUSP00000047609.1:p.Tyr405His	H-2-Kb	8	8	4	KNYHSLVL	KNYYSLVL	NetMHCpan	150	57	0.38	261	0.272	428.416	356.888	0.833	345.02	673.56	57	150	368.7567681	366.2182643	518.4895408	490.6140712	M1_p20	0.428571429	0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.275	261	0	0	NA	18qB2	chr18-5046666-88869177	3	2	1	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr18	37473936	37473936	T	C	ENSMUST00000050034.2	NA	ENSMUSG00000047033	missense	F/L	74	Pcdhb15	ENSMUST00000050034.2:c.220T>C	ENSMUSP00000059598.1:p.Phe74Leu	H-2-Kb	8	10	2	RLLLLSPL	RFLLLSPL	SMMPMBEC	429.279	192.637	0.449	51	0.176	459.126	249.124	0.543	305.61	971.72	348.4	437.7	163.5836898	480.5515695	192.6371303	429.2793522	M1_p20	2.371428571	2.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.235	51	0	0	NA	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr19	4891072	4891072	G	A	ENSMUST00000053506.7	1	ENSMUSG00000006464	missense	P/L	538	Bbs1	ENSMUST00000053506.7:c.1613C>T	ENSMUSP00000055321.6:p.Pro538Leu	H-2-Kb	8	10	2	VLLLVPGL	VPLLVPGL	SMM	424.365	410.904	0.968	123	0.211	493.423	1489.038	3.018	3060.09	979.51	2433.9	536.3	410.9036509	424.3654321	544.1767718	450.5468939	M1_p20	2.485714286	2.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.222	123	0	0	NA	19qA	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	sgMsh2	cell line
chr18	37021442	37021442	T	C	ENSMUST00000047614.3	1	ENSMUSG00000103310	missense	Y/H	405	Pcdha12	ENSMUST00000047614.3:c.1213T>C	ENSMUSP00000047609.1:p.Tyr405His	H-2-Kb	8	6	6	TFKNYHSL	TFKNYYSL	SMM	267.756	194.42	0.726	261	0.272	366.723	239.62	0.653	359	1171.72	262.6	447.2	194.4195797	267.7564861	216.6406749	286.246378	M1_p20	-0.871428571	-0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.275	261	0	0	NA	18qB2	chr18-5046666-88869177	3	2	1	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr18	37021442	37021442	T	C	ENSMUST00000047614.3	1	ENSMUSG00000103310	missense	Y/H	405	Pcdha12	ENSMUST00000047614.3:c.1213T>C	ENSMUSP00000047609.1:p.Tyr405His	H-2-Kb	9	5	7	STFKNYHSL	STFKNYYSL	NetMHCpan	15.4	13.9	0.903	261	0.272	61.313	45.651	0.745	16.12	22.6	13.9	15.4	75.18132925	100.0253316	87.34740358	104.5321782	M1_p20	-0.871428571	-0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.275	261	0	0	NA	18qB2	chr18-5046666-88869177	3	2	1	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr19	3948632	3948632	A	G	ENSMUST00000162708.6	1	ENSMUSG00000036908	missense	K/R	517	Unc93b1	ENSMUST00000162708.6:c.1550A>G	ENSMUSP00000124272.1:p.Lys517Arg	H-2-Kb	9	4	8	SSLPMKARL	SSLPMKAKL	NetMHC	44.92	155.55	3.463	90	0.111	188.011	364.422	1.938	155.55	44.92	303	126.5	455.1033161	249.5226649	425.8434778	282.000579	M1_p20	0.185714286	0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.139	90	0	0	NA	19qA	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	sgMsh2	cell line
chr17	84697532	84697532	T	C	ENSMUST00000045714.14	1	ENSMUSG00000024254	missense	F/L	576	Abcg8	ENSMUST00000045714.14:c.1726T>C	ENSMUSP00000035246.8:p.Phe576Leu	H-2-Kb	9	3	9	NSFYLTAGL	NSFYLTAGF	NetMHC	85.47	432.59	5.061	114	0.289	225.767	521.843	2.311	432.59	85.47	325	89.2	611.0967866	362.3347605	709.9863514	410.4403034	M1_p20	1.4	1.4	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.264	114	0	0	NA	17qE4	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr19	4891072	4891072	G	A	ENSMUST00000053506.7	1	ENSMUSG00000006464	missense	P/L	538	Bbs1	ENSMUST00000053506.7:c.1613C>T	ENSMUSP00000055321.6:p.Pro538Leu	H-2-Kb	9	5	7	QAFFKVLLL	QAFFKVPLL	NetMHCpan	134.4	124.7	0.928	123	0.211	153.129	125.835	0.822	126.97	161.01	124.7	134.4	120.8119794	145.2479461	153.9040328	179.1636906	M1_p20	2.471428571	2.471428571	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.222	123	0	0	NA	19qA	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	sgMsh2	cell line
chr18	3426897	3426897	T	C	ENSMUST00000162301.7	1	ENSMUSG00000024231	missense	I/T	509	Cul2	ENSMUST00000162301.7:c.1526T>C	ENSMUSP00000125403.1:p.Ile509Thr	H-2-Kb	9	5	7	LGISFQTYV	LGISFQIYV	NetMHCpan	142.7	349.8	2.451	159	0.182	483.631	634.236	1.311	421.03	165.38	349.8	142.7	847.4420308	801.8811416	1074.607828	977.7999259	M1_p20	0.742857143	0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.181	159	0	0	NA	18qA1	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	sgMsh2	cell line
chr17	84697532	84697532	T	C	ENSMUST00000045714.14	1	ENSMUSG00000024254	missense	F/L	576	Abcg8	ENSMUST00000045714.14:c.1726T>C	ENSMUSP00000035246.8:p.Phe576Leu	H-2-Kb	9	4	8	SFYLTAGLM	SFYLTAGFM	NetMHC	185.37	344.02	1.856	114	0.289	368.163	542.485	1.473	344.02	185.37	582.5	462.1	502.4698412	274.2268658	867.4610828	521.4948213	M1_p20	1.271428571	1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.264	114	0	0	NA	17qE4	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr18	37680939	37680939	G	T	ENSMUST00000192931.1	1	ENSMUSG00000103037	missense	S/I	161	Pcdhgb1	ENSMUST00000192931.1:c.482G>T	ENSMUSP00000141348.1:p.Ser161Ile	H-2-Kb	9	10	2	VIPNPHFSL	VSPNPHFSL	NetMHC	211.65	119.37	0.564	260	0.492	410.119	267.215	0.652	119.37	211.65	107.8	235.3	415.0591573	584.9382211	522.696991	774.9077422	M1_p20	-0.585714286	0.228571429	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.494	260	0	0	NA	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.202897461	NA	2	1	sgMsh2	cell line
chr19	5892407	5892407	G	A	ENSMUST00000236767.1	NA	ENSMUSG00000044390	missense	P/S	232	Tigd3	ENSMUST00000236767.1:c.694C>T	ENSMUSP00000157880.1:p.Pro232Ser	H-2-Kb	9	10	2	LSTSYHPDL	LPTSYHPDL	NetMHC	228.41	8184.32	35.832	129	0.124	421.567	5889.506	13.97	8184.32	228.41	6947.2	424.1	4831.811688	480.961153	4510.762902	419.0347115	M1_p20	-1.042857143	-0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.151	129	0	0	NA	19qA	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	sgMsh2	cell line
chr18	25340381	25340381	A	G	ENSMUST00000097643.9	5	ENSMUSG00000033632	missense	N/S	414	AW554918	ENSMUST00000097643.9:c.1241A>G	ENSMUSP00000095248.3:p.Asn414Ser	H-2-Kb	9	10	2	YSWLRTQAM	YNWLRTQAM	NetMHCpan	246.9	389.9	1.579	66	0.364	285.227	354.619	1.243	397.05	289.33	389.9	246.9	301.3769268	283.2109234	319.3375581	287.2433612	M1_p20	-0.3	-0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.34	66	0	0	NA	18qA2	chr18-5046666-88869177	3	2	1	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr18	36770182	36770182	GC	G	ENSMUST00000001416.7	1	ENSMUSG00000001380	FS	G/X	365	Hars	ENSMUST00000001416.7:c.1094del	ENSMUSP00000001416.6:p.Gly365AlafsTer29	H-2-Kb	9	28	0	SVLEWSGSF	NA	NetMHC	351.69	NA	NA	75	0.4	488.563	NA	NA	NA	351.69	NA	455.8	NA	521.3267383	NA	692.2293355	M1_p20	0.028571429	0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.376	75	0	0	NA	18qB2	chr18-5046666-88869177	3	2	1	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr18	44847844	44847844	A	G	ENSMUST00000037763.10	1	ENSMUSG00000034653	missense	Q/R	502	Ythdc2	ENSMUST00000037763.10:c.1505A>G	ENSMUSP00000048340.7:p.Gln502Arg	H-2-Kb	9	9	3	FARVFHLIL	FAQVFHLIL	SMM	224.962	422.776	1.879	113	0.115	340.8	495.95	1.455	462.4	364.46	529.5	447.6	422.7756832	224.9624328	563.9622051	317.1392538	M1_p20	1.628571429	1.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.137	113	0	0	NA	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.202897461	NA	1	0.639774391	sgMsh2	cell line
chr18	37941753	37941753	A	G	ENSMUST00000043498.8	1	ENSMUSG00000024454	missense	S/P	312	Hdac3	ENSMUST00000043498.8:c.934T>C	ENSMUSP00000037981.7:p.Ser312Pro	H-2-Kb	9	4	8	RCWTYETPL	RCWTYETSL	SMMPMBEC	408.555	698.634	1.71	373	0.228	457.95	789.442	1.724	880.25	477.4	638	438.5	1244.829868	714.6773197	698.6344547	408.5545015	M1_p20	-0.7	-0.7	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.236	373	0	0	NA	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr18	75519813	75519813	T	C	ENSMUST00000165559.2	5	ENSMUSG00000052928	missense	K/E	458	Ctif	ENSMUST00000165559.2:c.1372A>G	ENSMUSP00000129974.1:p.Lys458Glu	H-2-Kb	9	3	9	RSFAFTAAE	RSFAFTAAK	SMM	476.552	1897.186	3.981	34	0.176	497.378	1583.55	3.184	1412.21	511.42	1327.6	1067	1897.186388	476.5516746	1754.890407	483.3369531	M1_p20	0.971428571	1.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.239	34	0	0	NA	18qE3	chr18-5046666-88869177	3	2	1	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr18	44847844	44847844	A	G	ENSMUST00000037763.10	1	ENSMUSG00000034653	missense	Q/R	502	Ythdc2	ENSMUST00000037763.10:c.1505A>G	ENSMUSP00000048340.7:p.Gln502Arg	H-2-Kb	9	7	5	DAFARVFHL	DAFAQVFHL	NetMHCpan	355	1026.1	2.89	113	0.115	436.068	1456.594	3.34	1952.22	609.77	1026.1	355	1233.417199	408.4228203	1679.770694	463.713778	M1_p20	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.137	113	0	0	NA	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.202897461	NA	1	0.639774391	sgMsh2	cell line
chr18	3426897	3426897	T	C	ENSMUST00000162301.7	1	ENSMUSG00000024231	missense	I/T	509	Cul2	ENSMUST00000162301.7:c.1526T>C	ENSMUSP00000125403.1:p.Ile509Thr	H-2-Kb	9	7	5	ISFQTYVLQ	ISFQIYVLQ	SMMPMBEC	150.401	157.127	1.045	159	0.182	384.668	939.85	2.443	1663.87	612.26	3017.7	2433.7	215.8291001	157.0760603	157.1267038	150.4007493	M1_p20	0.257142857	0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.181	159	0	0	NA	18qA1	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	sgMsh2	cell line
chr19	5982837	5982837	A	C	ENSMUST00000041827.7	1	ENSMUSG00000037451	missense	S/A	267	Slc22a20	ENSMUST00000041827.7:c.799T>G	ENSMUSP00000049473.7:p.Ser267Ala	H-2-Kb	9	6	6	VFFLYAWWL	VFFLYSWWL	SMM	111.715	68.251	0.611	57	0.193	477.142	326.92	0.685	561.53	819.31	1138.8	1653.8	68.25115418	111.7146168	92.31026548	134.9739632	M1_p20	1.3	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.222	57	0	0	NA	19qA	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	sgMsh2	cell line
chr2	24953277	24953277	T	C	ENSMUST00000028350.8	1	ENSMUSG00000026974	missense	V/A	87	Zmynd19	ENSMUST00000028350.8:c.260T>C	ENSMUSP00000028350.3:p.Val87Ala	H-2-Db	9	10	2	VAHLNAVTV	VVHLNAVTV	NetMHC	8.32	172.04	20.678	112	0.161	28.28	261.657	9.252	172.04	8.32	293.9	20.7	229.4140437	35.86080216	327.0167515	51.23538453	M1_p20	0.942857143	1.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.194	112	0	0	NA	2qA3	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	0.905957897	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Db	9	5	9	SNVVNHFFV	SNVVNHFFC	NetMHC	33.28	4264.52	128.141	331	0.199	169.809	3110.826	18.32	4264.52	33.28	4326.5	48.8	1957.131469	290.8171406	1310.901318	321.7881152	M1_p20	1.642857143	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.201	331	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.9386471	sgMsh2	cell line
chr2	31207697	31207697	A	G	ENSMUST00000056433.6	1	ENSMUSG00000000194	missense	K/R	441	Gpr107	ENSMUST00000056433.6:c.1322A>G	ENSMUSP00000056739.5:p.Lys441Arg	H-2-Db	9	4	8	KAAINLARL	KAAINLAKL	NetMHCpan	101.4	102.4	1.01	322	0.236	325.555	235.751	0.724	167.68	392.01	102.4	101.4	303.8225469	298.2771604	364.3929785	352.8336521	M1_p20	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.247	322	0	0	NA	2qB	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr2	24687761	24687761	A	G	ENSMUST00000041342.11	1	ENSMUSG00000004113	missense	L/P	700	Cacna1b	ENSMUST00000041342.11:c.2099T>C	ENSMUSP00000037416.5:p.Leu700Pro	H-2-Db	9	4	8	TLFGNYTPL	TLFGNYTLL	NetMHCpan	113.2	549.8	4.857	146	0.192	218.505	712.435	3.26	2806.17	647.6	549.8	113.2	840.6592577	260.9876759	584.2113633	176.0232357	M1_p20	-0.128571429	-1.27E-16	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.197	146	0	0	NA	2qA3	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	0.919967555	sgMsh2	cell line
chr2	30341822	30341822	A	C	ENSMUST00000064447.11	1	ENSMUSG00000052533	missense	D/A	1476	Nup188	ENSMUST00000064447.11:c.4427A>C	ENSMUSP00000065836.5:p.Asp1476Ala	H-2-Db	9	11	1	AVQVNLGYL	DVQVNLGYL	SMMPMBEC	259.161	1344.528	5.188	150	0.16	389.646	4222.314	10.836	7705.49	677.74	7100.1	496.4	1232.02636	282.8915661	1344.528462	259.1612106	M1_p20	0.442857143	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.189	150	0	0	NA	2qB	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	0.882608467	sgMsh2	cell line
chr2	5979843	5979843	T	C	ENSMUST00000060092.12	1	ENSMUSG00000043241	missense	L/S	523	Upf2	ENSMUST00000060092.12:c.1568T>C	ENSMUSP00000058375.6:p.Leu523Ser	H-2-Db	9	10	2	NSEINDDTL	NLEINDDTL	SMM	192.584	1215.122	6.31	284	0.324	455.416	4141.561	9.094	10285.6	706.39	7068	1503.5	1215.122325	192.5839101	1157.630605	204.4419431	M1_p20	-0.914285714	-0.914285714	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.317	284	0	0	NA	2qA1	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	2	1	sgMsh2	cell line
chr2	22577871	22577871	T	C	ENSMUST00000044749.13	5	ENSMUSG00000025716	missense	V/A	1317	Myo3a	ENSMUST00000044749.13:c.3950T>C	ENSMUSP00000046329.7:p.Val1317Ala	H-2-Db	9	10	2	SAVTQNAPL	SVVTQNAPL	SMMPMBEC	357.742	2283.337	6.383	177	0.266	496.921	3714.743	7.476	9108.98	745.43	4105.8	474.3	3323.686094	519.5412082	2283.336925	357.7420571	M1_p20	0.071428571	0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.252	177	0	0	NA	2qA3	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr19	13502426	13502426	A	G	ENSMUST00000217001.1	2	ENSMUSG00000071629	missense	I/V	28	Olfr1477	ENSMUST00000217001.1:c.82A>G	ENSMUSP00000149565.1:p.Ile28Val	H-2-Kb	8	11	1	VIFTLIYL	IIFTLIYL	SMM	15.267	16.283	1.067	927	0.164	17.014	18.256	1.073	19.54	16.62	27.2	23.8	16.2832091	15.26651821	16.97227266	17.40764414	M1_p20	2.485714286	2.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.172	927	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.803220404	sgMsh2	cell line
chr19	10207246	10207246	T	G	ENSMUST00000040372.13	1	ENSMUSG00000036372	missense	F/V	66	Tmem258	ENSMUST00000040372.13:c.196T>G	ENSMUSP00000044751.7:p.Phe66Val	H-2-Kb	8	11	1	VGVLFLLL	FGVLFLLL	NetMHC	19.2	194.49	10.13	296	0.149	37.169	178.287	4.797	194.49	19.2	271.5	29.8	162.0839455	44.53895263	157.666708	44.53895263	M1_p20	3.114285714	3.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.16	296	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.747181771	sgMsh2	cell line
chr19	44973627	44973627	T	C	ENSMUST00000096053.4	1	ENSMUSG00000036097	missense	I/T	1081	Slf2	ENSMUST00000096053.4:c.3242T>C	ENSMUSP00000093758.3:p.Ile1081Thr	H-2-Kb	8	8	4	LTYTLLHL	LTYILLHL	NetMHCpan	21.4	34.2	1.598	648	0.122	46.318	52.591	1.135	36.2	30.3	34.2	21.4	74.08665723	69.6209588	68.98267002	62.33615346	M1_p20	0.785714286	0.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.128	648	0	0	NA	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.597745417	sgMsh2	cell line
chr19	10207246	10207246	T	G	ENSMUST00000040372.13	1	ENSMUSG00000036372	missense	F/V	66	Tmem258	ENSMUST00000040372.13:c.196T>G	ENSMUSP00000044751.7:p.Phe66Val	H-2-Kb	8	4	8	VASLFMGV	VASLFMGF	NetMHC	37.83	202.78	5.36	296	0.149	128.266	476.977	3.719	202.78	37.83	174.7	78.4	810.4757034	178.1312026	751.173053	216.6406749	M1_p20	1.9	1.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.16	296	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.747181771	sgMsh2	cell line
chr2	31207697	31207697	A	G	ENSMUST00000056433.6	1	ENSMUSG00000000194	missense	K/R	441	Gpr107	ENSMUST00000056433.6:c.1322A>G	ENSMUSP00000056739.5:p.Lys441Arg	H-2-Kb	8	5	7	AAINLARL	AAINLAKL	NetMHC	45.63	189.95	4.163	322	0.236	104.51	266.237	2.547	189.95	45.63	211.3	91.6	351.3500341	122.9532464	321.1737185	117.4194387	M1_p20	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.247	322	0	0	NA	2qB	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	8	13	1	VTFPHYWL	NA	NetMHCpan	13.9	NA	NA	331	0.199	31.617	NA	NA	NA	50.29	NA	13.9	NA	24.5323979	NA	38.70258739	M1_p20	-0.157142857	-0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.201	331	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.9386471	sgMsh2	cell line
chr19	12861870	12861870	T	G	ENSMUST00000213606.1	5	ENSMUSG00000046272	missense	F/V	32	Olfr1444	ENSMUST00000213606.1:c.94T>G	ENSMUSP00000150212.1:p.Phe32Val	H-2-Kb	8	9	3	LIVLFIYL	LIFLFIYL	SMMPMBEC	51.968	5.953	0.115	261	0.23	56.013	7.566	0.135	8.68	52.22	46.7	335.9	6.452678095	59.80534499	5.953056439	51.96847826	M1_p20	3.185714286	3.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	261	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	2	1	sgMsh2	cell line
chr2	25285324	25285324	T	C	ENSMUST00000028341.10	1	ENSMUSG00000026965	missense	L/P	792	Anapc2	ENSMUST00000028341.10:c.2375T>C	ENSMUSP00000028341.4:p.Leu792Pro	H-2-Kb	8	6	6	RIYSMPRM	RIYSMLRM	NetMHC	71.23	104.47	1.467	106	0.16	122.271	146.145	1.195	104.47	71.23	83.4	78.3	187.8192059	166.241711	198.4906254	180.6092545	M1_p20	0.014285714	0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.173	106	0	0	NA	2qA3	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	0.80789029	sgMsh2	cell line
chr2	31207697	31207697	A	G	ENSMUST00000056433.6	1	ENSMUSG00000000194	missense	K/R	441	Gpr107	ENSMUST00000056433.6:c.1322A>G	ENSMUSP00000056739.5:p.Lys441Arg	H-2-Kb	8	7	5	INLARLRL	INLAKLRL	NetMHCpan	74.3	156.3	2.104	322	0.236	185.389	321.112	1.732	315.08	157.11	156.3	74.3	327.1447838	213.6682534	353.7854762	227.3735801	M1_p20	0.1	0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.247	322	0	0	NA	2qB	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr19	44973627	44973627	T	C	ENSMUST00000096053.4	1	ENSMUSG00000036097	missense	I/T	1081	Slf2	ENSMUST00000096053.4:c.3242T>C	ENSMUSP00000093758.3:p.Ile1081Thr	H-2-Kb	8	5	7	AYYLTYTL	AYYLTYIL	NetMHC	157.88	325.67	2.063	648	0.122	364.856	839.945	2.302	325.67	157.88	374.5	180.5	1305.389154	569.823033	1434.630303	549.2119775	M1_p20	0.328571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.128	648	0	0	NA	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.597745417	sgMsh2	cell line
chr19	13919308	13919308	G	A	ENSMUST00000216835.1	5	ENSMUSG00000062314	missense	R/H	96	Olfr1505	ENSMUST00000216835.1:c.287G>A	ENSMUSP00000148945.1:p.Arg96His	H-2-Kb	8	7	5	VSYGHCAA	VSYGRCAA	SMM	158.76	1034.523	6.516	577	0.159	177.635	989.009	5.568	1066.54	175.49	462.1	202.1	1034.522641	158.7596015	943.4958625	179.7794304	M1_p20	0.057142857	0.4	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.159	577	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.742511885	sgMsh2	cell line
chr19	44973627	44973627	T	C	ENSMUST00000096053.4	1	ENSMUSG00000036097	missense	I/T	1081	Slf2	ENSMUST00000096053.4:c.3242T>C	ENSMUSP00000093758.3:p.Ile1081Thr	H-2-Kb	8	6	6	YYLTYTLL	YYLTYILL	NetMHCpan	165.3	361.7	2.188	648	0.122	245.167	350.171	1.428	417.91	195.39	361.7	165.3	333.2268594	301.8144301	338.6413603	294.9442949	M1_p20	1.057142857	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.128	648	0	0	NA	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.597745417	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	8	8	6	VNHFFVTF	VNHFFCDI	NetMHCpan	52.1	72.4	1.39	331	0.199	262.687	291.68	1.11	265.13	217.24	72.4	52.1	318.2291802	353.7854762	330.1718172	308.1342684	M1_p20	0.742857143	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.201	331	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.9386471	sgMsh2	cell line
chr2	24687761	24687761	A	G	ENSMUST00000041342.11	1	ENSMUSG00000004113	missense	L/P	700	Cacna1b	ENSMUST00000041342.11:c.2099T>C	ENSMUSP00000037416.5:p.Leu700Pro	H-2-Kb	8	5	7	LFGNYTPL	LFGNYTLL	SMMPMBEC	165.097	454.716	2.754	146	0.192	222.376	562.888	2.531	663.17	251.67	614.4	324.9	511.3755976	193.0812048	454.715753	165.0973111	M1_p20	-0.128571429	-0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.197	146	0	0	NA	2qA3	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	0.919967555	sgMsh2	cell line
chr19	10054643	10054643	A	G	ENSMUST00000115995.3	1	ENSMUSG00000024664	missense	H/R	266	Fads3	ENSMUST00000115995.3:c.797A>G	ENSMUSP00000111659.2:p.His266Arg	H-2-Kb	8	11	1	RQHLYFFL	HQHLYFFL	SMMPMBEC	135.75	290.228	2.138	375	0.128	153.427	437.353	2.851	1305.83	369.59	505.1	167.3	369.6068402	139.5532644	290.2284617	135.7500506	M1_p20	0.742857143	0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.139	375	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.649114163	sgMsh2	cell line
chr19	13530453	13530453	A	G	ENSMUST00000207093.2	5	ENSMUSG00000095484	missense	Q/R	260	Olfr1480	ENSMUST00000207093.2:c.779A>G	ENSMUSP00000146782.2:p.Gln260Arg	H-2-Kb	8	5	7	IIFMYLRP	IIFMYLQP	SMMPMBEC	44.539	72.234	1.622	1271	0.153	268.994	361.823	1.345	821.37	618.2	637.2	487.9	86.44502416	50.08872766	72.2337231	44.53895263	M1_p20	0.8	1.671428571	FALSE	FALSE	TRUE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.154	1271	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.719162454	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	8	17	0	HYWLFLAL	NA	SMMPMBEC	198.948	NA	NA	331	0.199	324.952	NA	NA	NA	632.06	NA	372.1	NA	277.8049629	NA	198.9481935	M1_p20	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.201	331	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.9386471	sgMsh2	cell line
chr19	16383254	16383254	G	A	ENSMUST00000025541.5	1	ENSMUSG00000024639	missense	V/M	314	Gnaq	ENSMUST00000025541.5:c.940G>A	ENSMUSP00000025541.5:p.Val314Met	H-2-Kb	8	6	6	ILKMFMDL	ILKMFVDL	NetMHCpan	249.7	319.7	1.28	309	0.149	388.374	474.546	1.222	1460.9	633.96	319.7	249.7	595.3056439	459.9811133	353.7854762	316.7670499	M1_p20	0.971428571	1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.142	309	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.663123822	sgMsh2	cell line
chr19	44973627	44973627	T	C	ENSMUST00000096053.4	1	ENSMUSG00000036097	missense	I/T	1081	Slf2	ENSMUST00000096053.4:c.3242T>C	ENSMUSP00000093758.3:p.Ile1081Thr	H-2-Kb	9	5	7	AYYLTYTLL	AYYLTYILL	NetMHC	38.65	71.83	1.858	648	0.122	52.197	70.367	1.348	71.83	38.65	163.4	63.7	44.06664633	41.69749833	68.90488306	62.69746764	M1_p20	1.057142857	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.128	648	0	0	NA	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.597745417	sgMsh2	cell line
chr2	24687761	24687761	A	G	ENSMUST00000041342.11	1	ENSMUSG00000004113	missense	L/P	700	Cacna1b	ENSMUST00000041342.11:c.2099T>C	ENSMUSP00000037416.5:p.Leu700Pro	H-2-Kb	9	4	8	TLFGNYTPL	TLFGNYTLL	NetMHCpan	51	85.6	1.678	146	0.192	88.814	134.728	1.517	105.68	60.07	85.6	51	193.2457716	151.7434661	163.775902	117.5574075	M1_p20	-0.128571429	-1.27E-16	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.197	146	0	0	NA	2qA3	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	0.919967555	sgMsh2	cell line
chr19	12861870	12861870	T	G	ENSMUST00000213606.1	5	ENSMUSG00000046272	missense	F/V	32	Olfr1444	ENSMUST00000213606.1:c.94T>G	ENSMUSP00000150212.1:p.Phe32Val	H-2-Kb	9	11	1	VLFIYLVTL	FLFIYLVTL	SMMPMBEC	71.986	213.919	2.972	261	0.23	79.87	322.573	4.039	371.55	80.04	851.5	79.7	273.5961615	92.49324152	213.9193154	71.98632454	M1_p20	2.442857143	3.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	261	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	2	1	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	9	13	1	VTFPHYWLF	NA	NetMHCpan	32	NA	NA	331	0.199	35.13	NA	NA	NA	109.74	NA	32	NA	35.08407252	NA	35.17628732	M1_p20	0.342857143	0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.201	331	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.9386471	sgMsh2	cell line
chr19	44973627	44973627	T	C	ENSMUST00000096053.4	1	ENSMUSG00000036097	missense	I/T	1081	Slf2	ENSMUST00000096053.4:c.3242T>C	ENSMUSP00000093758.3:p.Ile1081Thr	H-2-Kb	9	4	8	QAYYLTYTL	QAYYLTYIL	NetMHCpan	118.9	287.1	2.415	648	0.122	148.952	306.938	2.061	357.17	145.46	287.1	118.9	170.2589693	152.4438821	326.7758854	276.8534884	M1_p20	0.328571429	0.328571429	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.128	648	0	0	NA	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.597745417	sgMsh2	cell line
chr19	13795252	13795252	A	G	ENSMUST00000217384.1	5	ENSMUSG00000044040	missense	Y/H	120	Olfr1497	ENSMUST00000217384.1:c.358T>C	ENSMUSP00000149151.1:p.Tyr120His	H-2-Kb	9	9	3	MAHDRYVAV	MAYDRYVAV	NetMHC	162.02	19.49	0.12	455	0.187	189.123	25.934	0.137	19.49	162.02	16.4	233.6	35.57214058	202.3531643	32.3779986	175.8935847	M1_p20	-0.328571429	-0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	455	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.933977214	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	9	7	7	VVNHFFVTF	VVNHFFCDI	SMM	104.018	301.377	2.897	331	0.199	110.553	279.147	2.525	290.84	180.67	126.9	112.4	301.3769268	104.0183595	267.4545558	108.7051201	M1_p20	0.742857143	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.201	331	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.9386471	sgMsh2	cell line
chr19	13919308	13919308	G	A	ENSMUST00000216835.1	5	ENSMUSG00000062314	missense	R/H	96	Olfr1505	ENSMUST00000216835.1:c.287G>A	ENSMUSP00000148945.1:p.Arg96His	H-2-Kb	9	7	5	VSYGHCAAQ	VSYGRCAAQ	SMMPMBEC	70.186	63.863	0.91	577	0.159	153.142	189.09	1.235	297.25	222.51	1499.2	1266.4	80.93008565	83.77414421	63.8631006	70.18592048	M1_p20	-0.328571429	0.4	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.159	577	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.742511885	sgMsh2	cell line
chr19	13530453	13530453	A	G	ENSMUST00000207093.2	5	ENSMUSG00000095484	missense	Q/R	260	Olfr1480	ENSMUST00000207093.2:c.779A>G	ENSMUSP00000146782.2:p.Gln260Arg	H-2-Kb	9	5	7	IIFMYLRPS	IIFMYLQPS	SMM	113.269	84.161	0.743	1271	0.153	165.224	166.471	1.008	218.06	223.8	229.3	167.8	84.16082809	113.2687219	114.8814742	162.6484766	M1_p20	0.042857143	1.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.154	1271	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.719162454	sgMsh2	cell line
chr2	31207697	31207697	A	G	ENSMUST00000056433.6	1	ENSMUSG00000000194	missense	K/R	441	Gpr107	ENSMUST00000056433.6:c.1322A>G	ENSMUSP00000056739.5:p.Lys441Arg	H-2-Kb	9	7	5	INLARLRLF	INLAKLRLF	SMM	221.366	331.215	1.496	322	0.236	236.336	355.812	1.506	295.92	230.43	501.3	275	331.2150024	221.3655323	380.4083139	242.2423104	M1_p20	1	1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.247	322	0	0	NA	2qB	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr19	13705333	13705333	A	G	ENSMUST00000216366.1	5	ENSMUSG00000051156	missense	T/A	169	Olfr1491	ENSMUST00000216366.1:c.505A>G	ENSMUSP00000149071.1:p.Thr169Ala	H-2-Kb	9	6	6	TALIFALPF	TALIFTLPF	NetMHC	239.87	221.04	0.921	558	0.188	260.671	213.815	0.82	221.04	239.87	225.8	251.5	206.5903351	269.8422814	205.7074402	286.5827198	M1_p20	2.557142857	2.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.182	558	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.849919264	sgMsh2	cell line
chr19	16383254	16383254	G	A	ENSMUST00000025541.5	1	ENSMUSG00000024639	missense	V/M	314	Gnaq	ENSMUST00000025541.5:c.940G>A	ENSMUSP00000025541.5:p.Val314Met	H-2-Kb	9	5	7	FILKMFMDL	FILKMFVDL	NetMHC	268.8	623.27	2.319	309	0.149	358.268	502.216	1.402	623.27	268.8	645.4	411.6	381.1623536	362.3347605	317.8703353	354.201177	M1_p20	0.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.142	309	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.663123822	sgMsh2	cell line
chr2	25446007	25446007	G	T	ENSMUST00000102919.3	1	ENSMUSG00000026944	missense	G/C	2130	Abca2	ENSMUST00000102919.3:c.6388G>T	ENSMUSP00000099983.3:p.Gly2130Cys	H-2-Kb	9	8	4	QSLCYCPQF	QSLGYCPQF	SMMPMBEC	288.569	301.474	1.045	106	0.321	314.099	362.916	1.155	402.9	307.49	1194.2	724.5	322.9311952	320.7081525	301.4740949	288.5692163	M1_p20	0.742857143	0.742857143	TRUE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.318	106	0	0	NA	2qA3	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	2	1	sgMsh2	cell line
chr19	44973627	44973627	T	C	ENSMUST00000096053.4	1	ENSMUSG00000036097	missense	I/T	1081	Slf2	ENSMUST00000096053.4:c.3242T>C	ENSMUSP00000093758.3:p.Ile1081Thr	H-2-Kb	9	8	4	LTYTLLHLV	LTYILLHLV	NetMHCpan	420.8	764.9	1.818	648	0.122	426.798	410.951	0.963	451.86	440.77	764.9	420.8	360.6699835	420.8332054	370.0411313	432.7628777	M1_p20	1.485714286	1.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.128	648	0	0	NA	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.597745417	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	9	17	0	HYWLFLALV	NA	SMM	304.166	NA	NA	331	0.199	437.286	NA	NA	NA	459.38	NA	1465.1	NA	304.1655332	NA	415.1929781	M1_p20	2.757142857	2.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.201	331	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.9386471	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	9	14	0	TFPHYWLFL	NA	NetMHCpan	353	NA	NA	331	0.199	400.076	NA	NA	NA	462.8	NA	353	NA	426.6875784	NA	373.4650797	M1_p20	0.485714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.201	331	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.9386471	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	9	16	0	PHYWLFLAL	NA	SMM	166.001	NA	NA	331	0.199	366.318	NA	NA	NA	971.99	NA	541.1	NA	166.0007308	NA	191.5358177	M1_p20	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.201	331	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.9386471	sgMsh2	cell line
chr2	88006632	88006632	T	G	ENSMUST00000099839.3	NA	ENSMUSG00000075141	missense	M/L	49	Olfr1160	ENSMUST00000099839.3:c.145A>C	ENSMUSP00000097427.3:p.Met49Leu	H-2-Db	9	3	9	FSIYSITLL	FSIYSITLM	NetMHC	196.44	127.02	0.647	585	0.126	334.623	267.366	0.799	127.02	196.44	241.9	253.7	292.8329887	415.5468552	336.9535219	439.1066356	M1_p20	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.128	585	0	0	NA	2qD	chr2-85191598-90446729	7	NA	NA	0.9	4.202897461	NA	NA	0.597745417	sgMsh2	cell line
chr2	88006632	88006632	T	G	ENSMUST00000099839.3	NA	ENSMUSG00000075141	missense	M/L	49	Olfr1160	ENSMUST00000099839.3:c.145A>C	ENSMUSP00000097427.3:p.Met49Leu	H-2-Db	9	6	6	YSITLLGNI	YSITLMGNI	NetMHC	256.69	185.65	0.723	585	0.126	487.354	413.213	0.848	185.65	256.69	1299.1	1238	453.5445995	515.9647117	372.8807814	458.7435806	M1_p20	1.714285714	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.128	585	0	0	NA	2qD	chr2-85191598-90446729	7	NA	NA	0.9	4.202897461	NA	NA	0.597745417	sgMsh2	cell line
chr2	76908791	76908791	C	A	ENSMUST00000099981.9	5	ENSMUSG00000051747	missense	K/N	3972	Ttn	ENSMUST00000099981.9:c.11916G>T	ENSMUSP00000097561.3:p.Lys3972Asn	H-2-Db	9	7	5	TTLPNEATL	TTLPKEATL	NetMHCpan	214.8	14142.6	65.841	94	0.234	263.128	11648.396	44.269	24541.97	809.49	14142.6	214.8	9154.19164	281.5917975	8214.289409	244.6639596	M1_p20	0.014285714	0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.232	94	0	0	NA	2qC3	chr2-76867311-80657640	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr2	111479432	111479432	C	T	ENSMUST00000214816.1	5	ENSMUSG00000044039	missense	T/I	216	Olfr1288	ENSMUST00000214816.1:c.647C>T	ENSMUSP00000150331.1:p.Thr216Ile	H-2-Kb	8	11	1	ISYIFILA	TSYIFILA	NetMHC	13.7	39.81	2.906	439	0.162	26.729	68.38	2.558	39.81	13.7	67.3	32	79.2027024	28.29697428	69.46083504	25.16170116	M1_p20	2.185714286	2.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.164	439	0	0	NA	2qE3	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	0.765861315	sgMsh2	cell line
chr2	88006632	88006632	T	G	ENSMUST00000099839.3	NA	ENSMUSG00000075141	missense	M/L	49	Olfr1160	ENSMUST00000099839.3:c.145A>C	ENSMUSP00000097427.3:p.Met49Leu	H-2-Kb	8	4	8	SIYSITLL	SIYSITLM	NetMHC	23.89	82.42	3.45	585	0.126	68.167	260.849	3.827	82.42	23.89	64.5	24.2	480.5515695	119.8781411	439.2785529	112.1346934	M1_p20	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.128	585	0	0	NA	2qD	chr2-85191598-90446729	7	NA	NA	0.9	4.202897461	NA	NA	0.597745417	sgMsh2	cell line
chr2	85786374	85786374	T	C	ENSMUST00000215945.1	5	ENSMUSG00000033850	missense	F/L	288	Olfr1015	ENSMUST00000215945.1:c.862T>C	ENSMUSP00000148957.1:p.Phe288Leu	H-2-Kb	8	4	8	INPLLNPL	INPLLNPF	NetMHC	54.38	1179.23	21.685	266	0.113	137.353	1709.61	12.447	1179.23	54.38	1406.7	150.9	2012.51905	123.8055176	2012.51905	160.228586	M1_p20	0.171428571	0.271428571	FALSE	FALSE	FALSE	0	FALSE	2	Mutect2;Strelka2;MuSe;Vardict	4	0.129	266	0	0	NA	2qD	chr2-85191598-90446729	7	NA	NA	0.9	4.202897461	NA	NA	0.602415303	sgMsh2	cell line
chr2	86850868	86850868	T	C	ENSMUST00000099874.1	NA	ENSMUSG00000075171	missense	T/A	277	Olfr1095	ENSMUST00000099874.1:c.829A>G	ENSMUSP00000097459.1:p.Thr277Ala	H-2-Kb	8	5	7	IVSIFYAI	IVSIFYTI	NetMHCpan	75	94.1	1.255	347	0.225	221.713	461.173	2.08	432.86	132.44	94.1	75	525.7024488	316.0385059	489.4856902	310.9853997	M1_p20	2.242857143	2.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.214	347	0	0	NA	2qD	chr2-85191598-90446729	7	NA	NA	0.9	4.202897461	NA	NA	0.999355619	sgMsh2	cell line
chr2	76633559	76633559	C	G	ENSMUST00000002808.6	1	ENSMUSG00000002731	missense	G/A	253	Prkra	ENSMUST00000002808.6:c.758G>C	ENSMUSP00000002808.6:p.Gly253Ala	H-2-Kb	8	10	2	QAFNITYL	QGFNITYL	NetMHC	165.08	354.06	2.145	135	0.244	336.593	461.286	1.37	354.06	165.08	338	183.7	568.5124764	489.4856902	598.0534499	544.1767718	M1_p20	1.057142857	1.057142857	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.256	135	0	0	NA	2qC3	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr2	119139420	119139420	GT	G	ENSMUST00000094695.11	1	ENSMUSG00000070730	FS	T/X	387	Rmdn3	ENSMUST00000094695.11:c.1159del	ENSMUSP00000092283.5:p.Thr387ArgfsTer46	H-2-Kb	8	37	0	YSQDFQKL	NA	SMM	227.898	NA	NA	96	0.302	263.57	NA	NA	NA	233.55	NA	302.9	NA	227.8977303	NA	293.5891489	M1_p20	-1.228571429	-1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.29	96	0	0	NA	2qE5	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr2	37405335	37405335	A	C	ENSMUST00000100143.9	5	ENSMUSG00000075376	missense	V/G	223	Rc3h2	ENSMUST00000100143.9:c.668T>G	ENSMUSP00000097721.3:p.Val223Gly	H-2-Kb	8	8	4	VLFGVQRL	VLFVVQRL	NetMHCpan	165.8	52.4	0.316	184	0.158	207.26	71.12	0.343	63.22	364.58	52.4	165.8	79.02054124	199.8664966	79.93555598	214.6545013	M1_p20	0.885714286	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.163	184	0	0	NA	2qB	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	0.761191429	sgMsh2	cell line
chr2	90296129	90296129	A	G	ENSMUST00000214356.2	3	ENSMUSG00000080809	missense	V/A	244	Olfr1273-ps	ENSMUST00000214356.2:c.731T>C	ENSMUSP00000150797.1:p.Val244Ala	H-2-Kb	8	10	2	VAILFFGP	VVILFFGP	SMM	225.289	228.95	1.016	663	0.155	379.677	484.135	1.275	739.32	511.76	1159.7	523.3	228.9496585	225.2890066	228.9496585	247.5939338	M1_p20	1.957142857	2.785714286	FALSE	FALSE	TRUE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.155	663	0	0	NA	2qE1	chr2-85191598-90446729	7	NA	NA	0.9	4.202897461	NA	NA	0.723832341	sgMsh2	cell line
chr2	90296129	90296129	A	G	ENSMUST00000214356.2	3	ENSMUSG00000080809	missense	V/A	244	Olfr1273-ps	ENSMUST00000214356.2:c.731T>C	ENSMUSP00000150797.1:p.Val244Ala	H-2-Kb	8	11	1	AILFFGPA	VILFFGPA	SMMPMBEC	255.705	74.6	0.292	663	0.155	409.107	103.202	0.252	125.17	696.41	173	512.2	81.23440428	306.013087	74.60020141	255.7054591	M1_p20	1.957142857	1.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.155	663	0	0	NA	2qE1	chr2-85191598-90446729	7	NA	NA	0.9	4.202897461	NA	NA	0.723832341	sgMsh2	cell line
chr2	111479432	111479432	C	T	ENSMUST00000214816.1	5	ENSMUSG00000044039	missense	T/I	216	Olfr1288	ENSMUST00000214816.1:c.647C>T	ENSMUSP00000150331.1:p.Thr216Ile	H-2-Kb	8	9	3	LIISYIFI	LITSYIFI	SMMPMBEC	310.985	1121.347	3.606	439	0.162	433.688	1722.292	3.971	3964.38	758.62	2286.5	502	1158.083836	365.3759857	1121.346934	310.9853997	M1_p20	2.671428571	2.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.164	439	0	0	NA	2qE3	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	0.765861315	sgMsh2	cell line
chr2	111479432	111479432	C	T	ENSMUST00000214816.1	5	ENSMUSG00000044039	missense	T/I	216	Olfr1288	ENSMUST00000214816.1:c.647C>T	ENSMUSP00000150331.1:p.Thr216Ile	H-2-Kb	8	4	8	CTFFFLII	CTFFFLIT	SMM	244.197	1070.878	4.385	439	0.162	341.314	1400.034	4.102	4867.86	825.53	1660.5	334.5	1070.878008	244.1968177	1139.567356	348.1288376	M1_p20	2.928571429	2.928571429	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.164	439	0	0	NA	2qE3	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	0.765861315	sgMsh2	cell line
chr2	86850868	86850868	T	C	ENSMUST00000099874.1	NA	ENSMUSG00000075171	missense	T/A	277	Olfr1095	ENSMUST00000099874.1:c.829A>G	ENSMUSP00000097459.1:p.Thr277Ala	H-2-Kb	8	6	6	VSIFYAIG	VSIFYTIG	SMM	88.663	253.361	2.858	347	0.225	289.627	663.518	2.291	3632.36	1257.78	919.9	439.7	253.3611374	88.66250554	407.1364636	139.5532644	M1_p20	1.585714286	2.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.214	347	0	0	NA	2qD	chr2-85191598-90446729	7	NA	NA	0.9	4.202897461	NA	NA	0.999355619	sgMsh2	cell line
chr2	86198386	86198386	C	T	ENSMUST00000215763.1	3	ENSMUSG00000075198	missense	R/H	122	Olfr1045	ENSMUST00000215763.1:c.365G>A	ENSMUSP00000148982.1:p.Arg122His	H-2-Kb	9	7	5	MAYDHYVAI	MAYDRYVAI	NetMHCpan	10.8	14.4	1.333	882	0.169	29.47	30.259	1.027	27.08	22.19	14.4	10.8	39.27443988	40.65462879	33.43874735	36.74937861	M1_p20	0.171428571	0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.169	882	0	0	NA	2qD	chr2-85191598-90446729	7	NA	NA	0.9	4.202897461	NA	NA	0.789210745	sgMsh2	cell line
chr2	90296129	90296129	A	G	ENSMUST00000214356.2	3	ENSMUSG00000080809	missense	V/A	244	Olfr1273-ps	ENSMUST00000214356.2:c.731T>C	ENSMUSP00000150797.1:p.Val244Ala	H-2-Kb	9	10	2	VAILFFGPA	VVILFFGPA	NetMHC	27.49	37.64	1.369	663	0.155	72.942	107.929	1.48	37.64	27.49	98.3	44.2	120.2568988	106.9325688	117.5574075	101.6833861	M1_p20	1.957142857	2.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.155	663	0	0	NA	2qE1	chr2-85191598-90446729	7	NA	NA	0.9	4.202897461	NA	NA	0.723832341	sgMsh2	cell line
chr2	86850868	86850868	T	C	ENSMUST00000099874.1	NA	ENSMUSG00000075171	missense	T/A	277	Olfr1095	ENSMUST00000099874.1:c.829A>G	ENSMUSP00000097459.1:p.Thr277Ala	H-2-Kb	9	6	6	VSIFYAIGI	VSIFYTIGI	NetMHCpan	35.2	36.3	1.031	347	0.225	144.235	118.506	0.822	85.22	81.88	36.3	35.2	158.1648595	206.5903351	151.7923903	211.4706012	M1_p20	2.342857143	2.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.214	347	0	0	NA	2qD	chr2-85191598-90446729	7	NA	NA	0.9	4.202897461	NA	NA	0.999355619	sgMsh2	cell line
chr2	111335694	111335694	C	A	ENSMUST00000099618.1	NA	ENSMUSG00000096554	missense	R/M	128	Olfr1282	ENSMUST00000099618.1:c.383G>T	ENSMUSP00000097213.1:p.Arg128Met	H-2-Kb	9	10	2	CMPLHYSSI	CRPLHYSSI	NetMHC	94.4	1410.95	14.947	1490	0.243	136.949	1266.807	9.25	1410.95	94.4	2800.2	169.4	724.6194716	104.4984864	1122.664526	174.2809827	M1_p20	0.085714286	0.185714286	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.24	1490	0	0	NA	2qE3	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr2	89055081	89055081	G	A	ENSMUST00000215048.1	5	ENSMUSG00000075105	missense	A/V	115	Olfr1218	ENSMUST00000215048.1:c.344C>T	ENSMUSP00000149171.1:p.Ala115Val	H-2-Kb	9	11	1	VAMAYDRYV	AAMAYDRYV	NetMHC	105.62	485.64	4.598	520	0.162	324.279	997.291	3.075	485.64	105.62	827.1	254	1172.492302	394.5572246	1167.48148	422.9119919	M1_p20	-0.385714286	0.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.16	520	0	0	NA	2qE1	chr2-85191598-90446729	7	NA	NA	0.9	4.202897461	NA	NA	0.747181771	sgMsh2	cell line
chr2	68118819	68118819	A	G	ENSMUST00000112346.2	NA	ENSMUSG00000034780	missense	S/G	293	B3galt1	ENSMUST00000112346.2:c.877A>G	ENSMUSP00000107965.2:p.Ser293Gly	H-2-Kb	9	10	2	YGLCRYRRV	YSLCRYRRV	NetMHC	124.84	39.29	0.315	367	0.213	342.339	134.347	0.392	39.29	124.84	116.2	280.8	165.6189397	475.4556362	152.4930322	403.8778168	M1_p20	-0.614285714	-0.614285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.223	367	0	0	NA	2qC1.3	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr2	86160001	86160001	T	C	ENSMUST00000215624.1	NA	ENSMUSG00000075202	missense	Y/C	123	Olfr1042	ENSMUST00000215624.1:c.368A>G	ENSMUSP00000151053.1:p.Tyr123Cys	H-2-Kb	9	6	6	MAYDRCVAI	MAYDRYVAI	NetMHCpan	132.7	14.4	0.109	755	0.195	145.305	30.259	0.208	27.08	145.65	14.4	132.7	39.27443988	184.1238299	33.43874735	144.9606074	M1_p20	0.528571429	0.528571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.194	755	0	0	NA	2qD	chr2-85191598-90446729	7	NA	NA	0.9	4.202897461	NA	NA	0.905957897	sgMsh2	cell line
chr2	91284247	91284247	A	G	ENSMUST00000102594.10	1	ENSMUSG00000040591	missense	F/L	147	1110051M20Rik	ENSMUST00000102594.10:c.439T>C	ENSMUSP00000099654.4:p.Phe147Leu	H-2-Kb	9	8	4	QIQLYYSEF	QIQFYYSEF	SMM	177.873	191.034	1.074	243	0.189	233.567	248.13	1.062	224.46	181.21	352.1	442.3	191.0337056	177.8729877	271.8003427	285.9235978	M1_p20	-0.542857143	-0.3	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.177	243	0	0	NA	2qE1	chr2-90447765-97631195	6	4	2	0.9	4.202897461	NA	1	0.826569834	sgMsh2	cell line
chr2	119139420	119139420	GT	G	ENSMUST00000094695.11	1	ENSMUSG00000070730	FS	T/X	387	Rmdn3	ENSMUST00000094695.11:c.1159del	ENSMUSP00000092283.5:p.Thr387ArgfsTer46	H-2-Kb	9	45	0	DGYIFLSAI	NA	NetMHC	187.49	NA	NA	96	0.302	309.473	NA	NA	NA	187.49	NA	212.4	NA	406.5462879	NA	510.7989549	M1_p20	2.185714286	2.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.29	96	0	0	NA	2qE5	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr2	88224667	88224667	A	G	ENSMUST00000214386.1	5	ENSMUSG00000075133	missense	Y/H	122	Olfr1170	ENSMUST00000214386.1:c.364T>C	ENSMUSP00000150142.1:p.Tyr122His	H-2-Kb	9	9	3	MAHDRFVAV	MAYDRFVAV	NetMHC	199.13	23.35	0.117	1081	0.15	234.065	34.595	0.148	23.35	199.13	17.9	219.1	50.01612019	284.5181656	45.84056903	249.0290432	M1_p20	0.257142857	0.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.157	1081	0	0	NA	2qD	chr2-85191598-90446729	7	NA	NA	0.9	4.202897461	NA	NA	0.733172113	sgMsh2	cell line
chr2	91284247	91284247	A	G	ENSMUST00000102594.10	1	ENSMUSG00000040591	missense	F/L	147	1110051M20Rik	ENSMUST00000102594.10:c.439T>C	ENSMUSP00000099654.4:p.Phe147Leu	H-2-Kb	9	9	3	IQLYYSEFL	IQFYYSEFL	NetMHCpan	192.4	29.6	0.154	243	0.189	382.31	125.453	0.328	51.33	204.72	29.6	192.4	199.5767748	559.8993973	219.4067579	608.4851727	M1_p20	0.5	0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.177	243	0	0	NA	2qE1	chr2-90447765-97631195	6	4	2	0.9	4.202897461	NA	1	0.826569834	sgMsh2	cell line
chr2	91284247	91284247	A	G	ENSMUST00000102594.10	1	ENSMUSG00000040591	missense	F/L	147	1110051M20Rik	ENSMUST00000102594.10:c.439T>C	ENSMUSP00000099654.4:p.Phe147Leu	H-2-Kb	9	3	9	FLFAFQIQL	FLFAFQIQF	NetMHCpan	235.9	1129.7	4.789	243	0.189	317.333	742.822	2.341	735.56	268.86	1129.7	235.9	750.0841699	444.7438999	632.7760017	365.8053055	M1_p20	1.242857143	2.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.177	243	0	0	NA	2qE1	chr2-90447765-97631195	6	4	2	0.9	4.202897461	NA	1	0.826569834	sgMsh2	cell line
chr2	111479432	111479432	C	T	ENSMUST00000214816.1	5	ENSMUSG00000044039	missense	T/I	216	Olfr1288	ENSMUST00000214816.1:c.647C>T	ENSMUSP00000150331.1:p.Thr216Ile	H-2-Kb	9	11	1	ISYIFILAS	TSYIFILAS	SMM	82.056	140.64	1.714	439	0.162	192.274	312.104	1.623	628.99	271.99	430.9	267.8	140.6403699	82.05593529	193.3080768	116.748148	M1_p20	2.185714286	2.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.164	439	0	0	NA	2qE3	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	0.765861315	sgMsh2	cell line
chr2	117177703	117177703	A	G	ENSMUST00000028829.12	1	ENSMUSG00000027351	missense	I/M	363	Spred1	ENSMUST00000028829.12:c.1089A>G	ENSMUSP00000028829.6:p.Ile363Met	H-2-Kb	9	10	2	CMYQVSCML	CIYQVSCML	SMM	228.618	511.811	2.239	179	0.324	331.205	563.356	1.701	483.81	295.31	614.9	367.1	511.811453	228.6177783	851.6281337	411.386466	M1_p20	0.971428571	0.971428571	TRUE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.301	179	0	0	NA	2qE5	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr2	111379635	111379635	T	C	ENSMUST00000062407.5	5	ENSMUSG00000108931	missense	F/L	212	Olfr1284	ENSMUST00000062407.5:c.634T>C	ENSMUSP00000052153.4:p.Phe212Leu	H-2-Kb	9	5	7	MTLGTFLLL	MTLGTFFLL	NetMHCpan	246.9	192.4	0.779	461	0.36	312.574	264.729	0.847	258.37	322.38	192.4	246.9	271.0878168	302.7680195	408.5545015	416.1500968	M1_p20	2.414285714	2.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.347	461	0	0	NA	2qE3	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	2	1	sgMsh2	cell line
chr2	36640083	36640083	C	A	ENSMUST00000076850.1	NA	ENSMUSG00000059251	missense	L/M	15	Olfr345	ENSMUST00000076850.1:c.43C>A	ENSMUSP00000076122.1:p.Leu15Met	H-2-Kb	9	3	9	STVSEFILM	STVSEFILL	SMM	386.465	293.839	0.76	521	0.282	441.72	260.57	0.59	196.03	454.04	227.3	429.4	293.8393807	386.4648502	451.0762902	611.2938126	M1_p20	1.842857143	1.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.276	521	0	0	NA	2qB	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr2	85786374	85786374	T	C	ENSMUST00000215945.1	5	ENSMUSG00000033850	missense	F/L	288	Olfr1015	ENSMUST00000215945.1:c.862T>C	ENSMUSP00000148957.1:p.Phe288Leu	H-2-Kb	9	3	9	IINPLLNPL	IINPLLNPF	NetMHCpan	438.7	1653.4	3.769	266	0.113	476.268	1172.73	2.462	1420.23	481.44	1653.4	438.7	794.5294511	471.0966327	925.2306262	534.872168	M1_p20	0.171428571	1.142857143	FALSE	FALSE	FALSE	0	FALSE	2	Mutect2;Strelka2;MuSe;Vardict	4	0.129	266	0	0	NA	2qD	chr2-85191598-90446729	7	NA	NA	0.9	4.202897461	NA	NA	0.602415303	sgMsh2	cell line
chr2	87656102	87656102	A	AT	ENSMUST00000135875.3	5	ENSMUSG00000111747	FS	M/NX	273	Olfr1134	ENSMUST00000135875.3:c.817dup	ENSMUSP00000150837.1:p.Met273AsnfsTer23	H-2-Kb	9	20	0	DSYVKPTYL	NA	SMM	254.748	NA	NA	393	0.165	435.96	NA	NA	NA	486.22	NA	545.4	NA	254.7475407	NA	385.7003207	M1_p20	-0.114285714	-0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.156	393	0	0	NA	2qD	chr2-85191598-90446729	7	NA	NA	0.9	4.202897461	NA	NA	0.728502227	sgMsh2	cell line
chr2	111479432	111479432	C	T	ENSMUST00000214816.1	5	ENSMUSG00000044039	missense	T/I	216	Olfr1288	ENSMUST00000214816.1:c.647C>T	ENSMUSP00000150331.1:p.Thr216Ile	H-2-Kb	9	9	3	LIISYIFIL	LITSYIFIL	SMM	278.042	657.824	2.366	439	0.162	468.593	1123.24	2.397	2222.79	631.89	1350.6	576.4	657.8244329	278.0417415	895.8803273	360.7862685	M1_p20	2.571428571	2.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.164	439	0	0	NA	2qE3	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	0.765861315	sgMsh2	cell line
chr2	111479432	111479432	C	T	ENSMUST00000214816.1	5	ENSMUSG00000044039	missense	T/I	216	Olfr1288	ENSMUST00000214816.1:c.647C>T	ENSMUSP00000150331.1:p.Thr216Ile	H-2-Kb	10	11	1	ISYIFILASV	TSYIFILASV	NetMHC	11.7	24.8	2.12	439	0.162	368.144	585.532	1.59	24.8	11.7	63.6	34.3	1107.464975	701.9885039	1147.78356	872.690001	M1_p20	2.971428571	2.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.164	439	0	0	NA	2qE3	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	0.765861315	sgMsh2	cell line
chr3	83070683	83070683	A	C	ENSMUST00000150268.7	1	ENSMUSG00000027998	missense	N/T	412	Plrg1	ENSMUST00000150268.7:c.1235A>C	ENSMUSP00000114968.1:p.Asn412Thr	H-2-Db	9	11	1	TAIINTLAV	NAIINTLAV	NetMHCpan	14.5	30.8	2.124	200	0.28	39.301	52.348	1.332	24.66	18.95	30.8	14.5	73.89584165	59.65131197	89.44786932	60.61358902	M1_p20	2.085714286	2.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.289	200	0	0	NA	3qE3	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr2	158768178	158768178	C	T	ENSMUST00000029183.2	1	ENSMUSG00000027654	missense	P/L	22	Fam83d	ENSMUST00000029183.2:c.65C>T	ENSMUSP00000029183.2:p.Pro22Leu	H-2-Db	9	8	4	CGPLNPTEL	CGPPNPTEL	NetMHC	65.56	425.32	6.487	35	0.343	216.905	644.766	2.973	425.32	65.56	306.4	93.7	864.2114181	340.1104688	1154.968129	410.7428385	M1_p20	-0.471428571	-0.214285714	TRUE	FALSE	FALSE	1	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.333	35	0	0	NA	2qH1	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	2	1	sgMsh2	cell line
chr2	180583499	180583499	A	G	ENSMUST00000029085.8	1	ENSMUSG00000027569	missense	T/A	83	Mrgbp	ENSMUST00000029085.8:c.247A>G	ENSMUSP00000029085.8:p.Thr83Ala	H-2-Db	9	10	2	SAMYDMQAL	STMYDMQAL	NetMHCpan	338.9	3104.4	9.16	165	0.145	412.293	3121.081	7.57	4556.07	341.95	3104.4	338.9	3137.762006	482.636319	2975.568825	520.6789256	M1_p20	0.157142857	0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.148	165	0	0	NA	2qH4	chr2-178034778-181807525	4	2	2	0.9	4.202897461	NA	1	0.691143138	sgMsh2	cell line
chr2	121336461	121336461	T	G	ENSMUST00000052029.9	1	ENSMUSG00000033526	missense	S/R	870	Ppip5k1	ENSMUST00000052029.9:c.2608A>C	ENSMUSP00000057632.3:p.Ser870Arg	H-2-Db	9	11	1	RAISELNYM	SAISELNYM	NetMHCpan	138.7	63.8	0.46	141	0.262	375.561	214.339	0.571	146.47	381.66	63.8	138.7	340.1104688	520.7388744	282.2084413	369.4621898	M1_p20	0.157142857	0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.252	141	0	0	NA	2qE5	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr2	172432369	172432369	G	A	ENSMUST00000109136.2	1	ENSMUSG00000074570	missense	G/D	714	Cass4	ENSMUST00000109136.2:c.2141G>A	ENSMUSP00000104764.2:p.Gly714Asp	H-2-Db	9	6	6	SSLSNDQPP	SSLSNGQPP	SMM	176.856	193.028	1.091	171	0.263	371.434	227.858	0.613	216.07	510.29	1047.3	1743.6	193.0278618	176.8560822	239.6458982	232.5787328	M1_p20	-1.528571429	-1.3	FALSE	FALSE	TRUE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.28	171	0	0	NA	2qH3	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr3	80860236	80860236	AT	A	ENSMUST00000029654.14	1	ENSMUSG00000028020	FS	I/X	226	Glrb	ENSMUST00000029654.14:c.676del	ENSMUSP00000029654.8:p.Ile226LeufsTer37	H-2-Db	9	20	0	RRISNMATV	NA	SMMPMBEC	200.249	NA	NA	130	0.315	384.587	NA	NA	NA	531.15	NA	1363	NA	238.0235894	NA	200.2488359	M1_p20	1.057142857	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.318	130	0	0	NA	3qE3	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	2	1	sgMsh2	cell line
chr2	131274254	131274254	T	C	ENSMUST00000183349.1	3	ENSMUSG00000037514	missense	I/T	24	Pank2	ENSMUST00000183349.1:c.70T>C	ENSMUSP00000139203.1:p.Ile24Thr	H-2-Kb	8	8	4	LSRTFSHL	LSRIFSHL	NetMHC	6.68	6.6	0.988	40	0.3	22.689	20.587	0.907	6.6	6.68	16.3	22.9	26.10597994	24.5323979	24.87367755	22.47708563	M1_p20	-0.485714286	-0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.322	40	0	0	NA	2qF1	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	2	1	sgMsh2	cell line
chr2	180714861	180714861	A	G	ENSMUST00000078687.5	1	ENSMUSG00000027573	missense	N/S	97	Gid8	ENSMUST00000078687.5:c.290A>G	ENSMUSP00000077753.5:p.Asn97Ser	H-2-Kb	8	11	1	SRYLYFHL	NRYLYFHL	NetMHC	8.14	142.06	17.452	168	0.256	15.146	118.423	7.819	142.06	8.14	235.5	34.2	94.78508415	14.91900983	87.24489012	15.37234066	M1_p20	0.014285714	0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.252	168	0	0	NA	2qH4	chr2-178034778-181807525	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr3	64407011	64407011	G	T	ENSMUST00000170280.2	5	ENSMUSG00000092049	missense	S/Y	94	Vmn2r4	ENSMUST00000170280.2:c.281C>A	ENSMUSP00000127513.1:p.Ser94Tyr	H-2-Kb	8	7	5	VGYAYSSS	VGYASSSS	SMM	32.266	499.735	15.488	310	0.168	59.556	2027.53	34.044	5514.7	68.21	3156.1	85.8	499.7352678	32.26561891	898.9592386	50.90260401	M1_p20	-0.514285714	0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.17	310	0	0	NA	3qE1	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	0.793880632	sgMsh2	cell line
chr2	180583499	180583499	A	G	ENSMUST00000029085.8	1	ENSMUSG00000027569	missense	T/A	83	Mrgbp	ENSMUST00000029085.8:c.247A>G	ENSMUSP00000029085.8:p.Thr83Ala	H-2-Kb	8	11	1	AMYDMQAL	TMYDMQAL	NetMHCpan	73.9	56.7	0.767	165	0.145	127.758	106.842	0.836	70.22	74.49	56.7	73.9	143.4630303	181.0256018	185.6692572	236.4503711	M1_p20	0.157142857	0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.148	165	0	0	NA	2qH4	chr2-178034778-181807525	4	2	2	0.9	4.202897461	NA	1	0.691143138	sgMsh2	cell line
chr2	132240580	132240580	A	G	ENSMUST00000110164.7	2	ENSMUSG00000027341	missense	F/S	90	Tmem230	ENSMUST00000110164.7:c.269T>C	ENSMUSP00000105793.1:p.Phe90Ser	H-2-Kb	8	11	1	SLPGFYHL	FLPGFYHL	NetMHCpan	98.2	522.1	5.317	225	0.253	164.475	459.527	2.794	694.44	114.79	522.1	98.2	387.9180607	214.1608096	396.9538331	229.4774419	M1_p20	0.557142857	0.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.251	225	0	0	NA	2qF2	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr3	28794409	28794409	G	A	ENSMUST00000060500.8	1	ENSMUSG00000050192	missense	C/Y	139	Eif5a2	ENSMUST00000060500.8:c.416G>A	ENSMUSP00000050289.7:p.Cys139Tyr	H-2-Kb	8	7	5	VSVMYAMS	VSVMCAMS	SMM	72.734	814.217	11.194	423	0.203	100.979	2855.808	28.281	5114.17	120.91	4897.4	389.8	814.2166892	72.73442335	792.027024	81.04757034	M1_p20	0.985714286	1.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.22	423	0	0	NA	3qA3	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr2	152004194	152004194	T	C	ENSMUST00000073228.11	1	ENSMUSG00000027463	missense	V/A	25	Slc52a3	ENSMUST00000073228.11:c.74T>C	ENSMUSP00000072961.5:p.Val25Ala	H-2-Kb	8	6	6	INGLWAEL	INGLWVEL	SMMPMBEC	144.125	415.662	2.884	61	0.197	176.594	546.352	3.094	646.97	156.97	525.5	212.8	567.204934	196.218522	415.6616909	144.1252256	M1_p20	0.157142857	0.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.195	61	0	0	NA	2qG3	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	0.910627783	sgMsh2	cell line
chr2	119774213	119774213	C	A	ENSMUST00000110793.7	5	ENSMUSG00000034032	missense	G/W	405	Rpap1	ENSMUST00000110793.7:c.1213G>T	ENSMUSP00000106420.1:p.Gly405Trp	H-2-Kb	8	10	2	AWYSLQEL	AGYSLQEL	NetMHC	226.35	163.52	0.722	137	0.241	489.02	233.364	0.477	163.52	226.35	163.4	328.3	303.2075422	649.7405923	343.3523309	704.2713151	M1_p20	-0.342857143	-0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.253	137	0	0	NA	2qE5	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr2	122798101	122798101	G	A	ENSMUST00000110506.8	1	ENSMUSG00000005803	missense	V/M	175	Sqor	ENSMUST00000110506.8:c.523G>A	ENSMUSP00000106133.2:p.Val175Met	H-2-Kb	8	4	8	SNYSVKTM	SNYSVKTV	NetMHCpan	208.3	441.3	2.119	107	0.234	422.209	474.578	1.124	553.57	406.15	441.3	208.3	390.6069803	438.2682402	507.8553127	549.2119775	M1_p20	-0.585714286	-0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.246	107	0	0	NA	2qE5	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr2	158495606	158495606	C	A	ENSMUST00000109485.8	1	ENSMUSG00000027652	missense	L/I	1496	Ralgapb	ENSMUST00000109485.8:c.4486C>A	ENSMUSP00000105111.2:p.Leu1496Ile	H-2-Kb	8	10	2	AIFQEVGL	ALFQEVGL	SMMPMBEC	137.006	468.533	3.42	159	0.314	277.086	992.844	3.583	2896.55	412.65	1197.3	363.3	788.3879904	190.8710225	468.5328006	137.0061303	M1_p20	1.128571429	1.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.318	159	0	0	NA	2qH1	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	2	1	sgMsh2	cell line
chr2	155799841	155799841	C	A	ENSMUST00000029141.5	1	ENSMUSG00000027612	missense	F/L	196	Mmp24	ENSMUST00000029141.5:c.588C>A	ENSMUSP00000029141.5:p.Phe196Leu	H-2-Kb	8	8	4	IMILFASG	IMIFFASG	SMM	74.6	83.703	1.122	281	0.256	234.084	180.516	0.771	763.65	419.47	259	383.3	83.70280268	74.60020141	102.0328459	84.86722465	M1_p20	1.942857143	2.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	281	0	0	NA	2qH1	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr2	164488344	164488344	A	C	ENSMUST00000109349.8	1	ENSMUSG00000017734	missense	E/A	32	Dbndd2	ENSMUST00000109349.8:c.95A>C	ENSMUSP00000104973.2:p.Glu32Ala	H-2-Kb	8	10	2	TAFVFPLS	TEFVFPLS	SMM	160.968	825.544	5.129	212	0.193	258.52	4210.814	16.288	12057.51	733.1	7401.3	299.4	825.5435717	160.9681675	1020.328459	217.6406428	M1_p20	1.857142857	1.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.212	212	0	0	NA	2qH3	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	0.990015846	sgMsh2	cell line
chr3	68927791	68927791	A	G	ENSMUST00000107812.7	5	ENSMUSG00000027778	missense	I/T	439	Ift80	ENSMUST00000107812.7:c.1316T>C	ENSMUSP00000103442.1:p.Ile439Thr	H-2-Kb	8	11	1	TIFLFEAS	IIFLFEAS	SMM	114.483	40.902	0.357	126	0.23	496.639	214.122	0.431	378.83	1363.31	368.3	827.8	40.90157201	114.482736	59.94321055	165.4778997	M1_p20	1.628571429	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.235	126	0	0	NA	3qE1	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr3	19144391	19144391	CA	C	ENSMUST00000029125.9	1	ENSMUSG00000027599	FS	L/X	135	Armc1	ENSMUST00000029125.9:c.404del	ENSMUSP00000029125.8:p.Leu135TrpfsTer11	H-2-Kb	8	6	6	KAQFFWEL	KAQFFLGT	NetMHCpan	149.3	1986.6	13.306	423	0.286	459.056	3918.761	8.537	6736.57	1628.41	1986.6	149.3	4233.894187	392.4099402	3603.628392	525.7024488	M1_p20	0.471428571	0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.274	423	0	0	NA	3qA2	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr3	64407011	64407011	G	T	ENSMUST00000170280.2	5	ENSMUSG00000092049	missense	S/Y	94	Vmn2r4	ENSMUST00000170280.2:c.281C>A	ENSMUSP00000127513.1:p.Ser94Tyr	H-2-Kb	9	7	5	VGYAYSSSI	VGYASSSSI	NetMHCpan	9	138.7	15.411	310	0.168	58.7	415.913	7.085	402.18	13.86	138.7	9	429.6452354	103.5404385	520.2954165	117.287033	M1_p20	0.185714286	0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.17	310	0	0	NA	3qE1	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	0.793880632	sgMsh2	cell line
chr2	132240580	132240580	A	G	ENSMUST00000110164.7	2	ENSMUSG00000027341	missense	F/S	90	Tmem230	ENSMUST00000110164.7:c.269T>C	ENSMUSP00000105793.1:p.Phe90Ser	H-2-Kb	9	10	2	VSLPGFYHL	VFLPGFYHL	NetMHC	22.77	187.13	8.218	225	0.253	93.901	246.108	2.621	187.13	22.77	200.4	30	291.8166046	157.8010905	341.3893746	169.9221522	M1_p20	0.557142857	0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.251	225	0	0	NA	2qF2	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr2	180714861	180714861	A	G	ENSMUST00000078687.5	1	ENSMUSG00000027573	missense	N/S	97	Gid8	ENSMUST00000078687.5:c.290A>G	ENSMUSP00000077753.5:p.Asn97Ser	H-2-Kb	9	10	2	TSRYLYFHL	TNRYLYFHL	NetMHC	31.73	61.26	1.931	168	0.256	64.842	81.222	1.253	61.26	31.73	45.4	34.6	101.1835704	95.08455975	115.9444594	104.2917608	M1_p20	0.014285714	0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.252	168	0	0	NA	2qH4	chr2-178034778-181807525	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr2	155799841	155799841	C	A	ENSMUST00000029141.5	1	ENSMUSG00000027612	missense	F/L	196	Mmp24	ENSMUST00000029141.5:c.588C>A	ENSMUSP00000029141.5:p.Phe196Leu	H-2-Kb	9	8	4	IMILFASGF	IMIFFASGF	NetMHC	41.27	55.74	1.351	281	0.256	68.982	67.964	0.985	55.74	41.27	51	63.3	80.18811416	74.66378462	111.4936158	117.287033	M1_p20	2.071428571	2.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	281	0	0	NA	2qH1	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr2	172454295	172454295	T	C	ENSMUST00000099060.1	1	ENSMUSG00000074569	missense	H/R	203	Gcnt7	ENSMUST00000099060.1:c.608A>G	ENSMUSP00000096659.1:p.His203Arg	H-2-Kb	9	8	4	FQWRYVMNL	FQWHYVMNL	NetMHC	44.73	91.86	2.054	150	0.253	378.766	352.119	0.93	91.86	44.73	121.8	74.8	680.9418088	764.0292757	582.4383998	682.7315929	M1_p20	-0.042857143	-0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.255	150	0	0	NA	2qH3	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr2	180583499	180583499	A	G	ENSMUST00000029085.8	1	ENSMUSG00000027569	missense	T/A	83	Mrgbp	ENSMUST00000029085.8:c.247A>G	ENSMUSP00000029085.8:p.Thr83Ala	H-2-Kb	9	4	8	VIWDHLSAM	VIWDHLSTM	NetMHCpan	73.8	57.5	0.779	165	0.145	77.793	86.56	1.113	88.57	75.95	57.5	73.8	84.54929682	79.63610307	91.88613834	85.35913393	M1_p20	-0.128571429	0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.148	165	0	0	NA	2qH4	chr2-178034778-181807525	4	2	2	0.9	4.202897461	NA	1	0.691143138	sgMsh2	cell line
chr2	153232546	153232546	T	C	ENSMUST00000109795.1	1	ENSMUSG00000051413	missense	H/R	145	Plagl2	ENSMUST00000109795.1:c.434A>G	ENSMUSP00000105419.1:p.His145Arg	H-2-Kb	9	6	6	LGYRRRLAM	LGYRRHLAM	NetMHCpan	106.1	36.4	0.343	102	0.353	202.302	100.457	0.497	49.47	152.11	36.4	106.1	197.7470439	297.9270937	151.4432775	252.4933823	M1_p20	-1.042857143	-1.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.365	102	0	0	NA	2qH1	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	2	1	sgMsh2	cell line
chr3	68927791	68927791	A	G	ENSMUST00000107812.7	5	ENSMUSG00000027778	missense	I/T	439	Ift80	ENSMUST00000107812.7:c.1316T>C	ENSMUSP00000103442.1:p.Ile439Thr	H-2-Kb	9	11	1	TIFLFEAST	IIFLFEAST	NetMHC	181.4	78.59	0.433	126	0.23	236.705	140.504	0.594	78.59	181.4	219.4	418.7	139.6722084	239.3922023	141.3350901	234.0183969	M1_p20	0.885714286	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.235	126	0	0	NA	3qE1	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr3	80860236	80860236	AT	A	ENSMUST00000029654.14	1	ENSMUSG00000028020	FS	I/X	226	Glrb	ENSMUST00000029654.14:c.676del	ENSMUSP00000029654.8:p.Ile226LeufsTer37	H-2-Kb	9	6	6	VQLEKLLYL	VQLEKIALP	NetMHC	204.77	13999.81	68.368	130	0.315	281.513	8030.813	28.527	13999.81	204.77	16761.3	288.8	1256.348137	274.2268658	2061.816449	309.2074862	M1_p20	0.928571429	0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.318	130	0	0	NA	3qE3	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	2	1	sgMsh2	cell line
chr2	119774213	119774213	C	A	ENSMUST00000110793.7	5	ENSMUSG00000034032	missense	G/W	405	Rpap1	ENSMUST00000110793.7:c.1213G>T	ENSMUSP00000106420.1:p.Gly405Trp	H-2-Kb	9	10	2	AWYSLQELF	AGYSLQELF	SMM	200.037	798.197	3.99	137	0.241	395.394	1041.581	2.634	1401.72	386.91	1071	1517.9	798.1968324	200.0368468	1012.161934	403.8778168	M1_p20	0.185714286	0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.253	137	0	0	NA	2qE5	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr4	45307923	45307923	CT	C	ENSMUST00000044673.8	1	ENSMUSG00000035601	FS	L/X	203	Trmt10b	ENSMUST00000044673.8:c.612del	ENSMUSP00000041052.2:p.Pro205LeufsTer8	H-2-Db	9	9	5	FSLFLWKPL	FSLFPLETL	SMM	212.628	545.281	2.564	362	0.359	281.074	540.89	1.924	345.62	310.63	884.2	463.6	545.2805415	212.6277776	536.5003381	251.518538	M1_p20	1.114285714	1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.358	362	0	0	NA	4qB1	chr4-3172212-60740166	3	2	1	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr3	155137385	155137385	AT	A	ENSMUST00000194376.1	1	ENSMUSG00000028182	FS	N/X	298	Lrriq3	ENSMUST00000194376.1:c.897del	ENSMUSP00000142127.1:p.His300ThrfsTer32	H-2-Db	9	7	7	KLWVNFTEV	NA	SMMPMBEC	272.001	NA	NA	279	0.254	443.324	NA	NA	NA	666.64	NA	596.5	NA	290.1482797	NA	272.0006864	M1_p20	0.371428571	0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.253	279	0	0	NA	3qH4	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr3	105005546	105005546	C	A	ENSMUST00000077548.11	1	ENSMUSG00000062127	missense	A/S	341	Cttnbp2nl	ENSMUST00000077548.11:c.1021G>T	ENSMUSP00000076751.5:p.Ala341Ser	H-2-Kb	8	11	1	SAYSYAKA	AAYSYAKA	NetMHC	11.09	24.13	2.176	100	0.23	44.921	75.024	1.67	24.13	11.09	53.5	32.2	129.0446488	68.82401428	96.54727043	57.64212727	M1_p20	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.231	100	0	0	NA	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr3	123479673	123479673	A	G	ENSMUST00000029603.9	1	ENSMUSG00000027978	missense	N/S	306	Prss12	ENSMUST00000029603.9:c.917A>G	ENSMUSP00000029603.8:p.Asn306Ser	H-2-Kb	8	11	1	STYVACRL	NTYVACRL	NetMHC	12.64	327.83	25.936	305	0.131	25.429	206.593	8.124	327.83	12.64	224.5	22.3	181.4429089	28.55880296	188.68614	33.24604589	M1_p20	0.828571429	0.828571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.132	305	0	0	NA	3qG1	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	0.616424961	sgMsh2	cell line
chr3	106115283	106115283	T	C	ENSMUST00000079132.11	1	ENSMUSG00000062778	missense	F/L	58	Chia1	ENSMUST00000079132.11:c.172T>C	ENSMUSP00000078134.5:p.Phe58Leu	H-2-Kb	8	7	5	LIYALAGM	LIYAFAGM	NetMHC	19.79	2.8	0.141	294	0.197	77.246	7.697	0.1	2.8	19.79	6.3	57.5	9.58826437	101.0974031	9.093686959	96.99291239	M1_p20	1.728571429	2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.206	294	0	0	NA	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	0.96199653	sgMsh2	cell line
chr3	97912727	97912727	T	C	ENSMUST00000029476.8	1	ENSMUSG00000027879	missense	F/L	112	Sec22b	ENSMUST00000029476.8:c.334T>C	ENSMUSP00000029476.2:p.Phe112Leu	H-2-Kb	8	5	7	VSRPYSLI	VSRPYSFI	NetMHC	35.71	43.03	1.205	170	0.312	89.738	68.079	0.759	43.03	35.71	61.9	67.6	74.25744462	111.8767908	100.1705365	143.4630303	M1_p20	-0.1	-0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.313	170	0	0	NA	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr3	108624645	108624645	A	G	ENSMUST00000051145.14	1	ENSMUSG00000040389	missense	Q/R	449	Wdr47	ENSMUST00000051145.14:c.1346A>G	ENSMUSP00000057482.8:p.Gln449Arg	H-2-Kb	8	11	1	RMYQQMLL	QMYQQMLL	NetMHC	67.4	94.29	1.399	190	0.216	121.812	213.148	1.75	94.29	67.4	182.1	93.4	244.1968177	150.2242346	524.4933667	251.0383085	M1_p20	0.442857143	0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.225	190	0	0	NA	3qF3	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr3	105978389	105978389	T	G	ENSMUST00000000573.8	1	ENSMUSG00000074340	missense	L/R	200	Ovgp1	ENSMUST00000000573.8:c.599T>G	ENSMUSP00000000573.2:p.Leu200Arg	H-2-Kb	8	5	7	TSYDALRL	TSYDALLL	NetMHCpan	51.2	92.7	1.811	187	0.262	65.195	129.261	1.983	119.93	68.34	92.7	51.2	138.5925865	62.04974485	172.480499	72.90209351	M1_p20	-0.1	-0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.259	187	0	0	NA	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr4	45307923	45307923	CT	C	ENSMUST00000044673.8	1	ENSMUSG00000035601	FS	L/X	203	Trmt10b	ENSMUST00000044673.8:c.612del	ENSMUSP00000041052.2:p.Pro205LeufsTer8	H-2-Kb	8	10	4	SLFLWKPL	SLFPLETL	NetMHCpan	45.9	278.7	6.072	362	0.359	65.889	861.472	13.075	1564.85	78.53	278.7	45.9	803.0452175	78.47656766	919.8986892	53.30156983	M1_p20	1.114285714	1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.358	362	0	0	NA	4qB1	chr4-3172212-60740166	3	2	1	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr3	93471188	93471188	CA	C	ENSMUST00000029516.2	1	ENSMUSG00000027908	FS	K/X	400	Tchhl1	ENSMUST00000029516.2:c.1202del	ENSMUSP00000029516.2:p.Lys401ArgfsTer118	H-2-Kb	8	107	0	LSYHLHRV	NA	NetMHCpan	70.9	NA	NA	91	0.286	121.556	NA	NA	NA	149.34	NA	70.9	NA	129.9391436	NA	113.172263	M1_p20	-0.714285714	-0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.273	91	0	0	NA	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr3	90065588	90065588	G	T	ENSMUST00000029551.2	1	ENSMUSG00000118506	missense	A/S	100	1700094D03Rik	ENSMUST00000029551.2:c.298G>T	ENSMUSP00000029551.2:p.Ala100Ser	H-2-Kb	8	14	2	KSFYEERL	KAFYEERL	NetMHCpan	201	376.5	1.873	176	0.239	214.892	517.698	2.409	493.72	224.79	376.5	201	759.871227	296.3056959	541.6765067	204.9934573	M1_p20	-1	-1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	176	0	0	NA	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr4	88129016	88129016	T	C	ENSMUST00000097992.9	5	ENSMUSG00000038368	missense	V/A	84	Focad	ENSMUST00000097992.9:c.251T>C	ENSMUSP00000095602.3:p.Val84Ala	H-2-Kb	8	8	4	FSYALNGI	FSYVLNGI	NetMHCpan	175.9	127	0.722	198	0.419	248.156	188.254	0.759	134.55	237.05	127	175.9	248.7367755	259.2626764	241.9580078	284.9311953	M1_p20	0.585714286	0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.414	198	0	0	NA	4qC4	chr4-61672369-145468270	3	2	1	0.9	4.202897461	NA	2	1	sgMsh2	cell line
chr3	94885727	94885727	A	G	ENSMUST00000005923.6	1	ENSMUSG00000005779	missense	V/A	170	Psmb4	ENSMUST00000005923.6:c.509T>C	ENSMUSP00000005923.6:p.Val170Ala	H-2-Kb	8	6	6	SFLGYADM	SFLGYVDM	NetMHC	242.11	1089.64	4.501	198	0.242	266.546	906.141	3.4	1089.64	242.11	979.1	570.7	705.8948282	244.1968177	833.1822323	288.8949831	M1_p20	0.728571429	0.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.261	198	0	0	NA	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr3	146584619	146584619	A	C	ENSMUST00000200633.1	1	ENSMUSG00000028185	missense	L/R	199	Dnase2b	ENSMUST00000200633.1:c.596T>G	ENSMUSP00000142872.1:p.Leu199Arg	H-2-Kb	8	5	7	STFHWKRI	STFHWKLI	SMMPMBEC	144.457	341.775	2.366	127	0.142	192.819	354.532	1.839	367.29	243.23	186.2	161.9	499.7352678	223.738128	341.7747702	144.4574685	M1_p20	-0.842857143	-0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.166	127	0	0	NA	3qH2	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	0.775201087	sgMsh2	cell line
chr3	88449737	88449737	A	G	ENSMUST00000029700.11	1	ENSMUSG00000028064	missense	L/P	309	Sema4a	ENSMUST00000029700.11:c.926T>C	ENSMUSP00000029700.5:p.Leu309Pro	H-2-Kb	8	5	7	IIRHAVPL	IIRHAVLL	SMM	169.332	448.477	2.649	95	0.211	247.434	538.144	2.175	1021.35	349.03	569.6	310.9	448.476819	169.3323751	506.6872779	183.9670312	M1_p20	0.714285714	0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.237	95	0	0	NA	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr3	93471188	93471188	CA	C	ENSMUST00000029516.2	1	ENSMUSG00000027908	FS	K/X	400	Tchhl1	ENSMUST00000029516.2:c.1202del	ENSMUSP00000029516.2:p.Lys401ArgfsTer118	H-2-Kb	8	114	0	VMRAFVKF	NA	NetMHCpan	161.4	NA	NA	91	0.286	481.024	NA	NA	NA	374.91	NA	161.4	NA	685.0779666	NA	587.1377443	M1_p20	0.728571429	0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.273	91	0	0	NA	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr3	107311516	107311516	C	CT	ENSMUST00000029502.13	1	ENSMUSG00000027896	FS	L/LX	478	Slc16a4	ENSMUST00000029502.13:c.1440dup	ENSMUSP00000029502.7:p.Val481CysfsTer5	H-2-Kb	8	9	6	VSLFFCTT	VSLFFVPL	NetMHCpan	99	3.7	0.037	104	0.221	150.102	2.995	0.02	3.56	384.31	3.7	99	2.252890066	166.6249377	2.430748352	133.5795574	M1_p20	1.385714286	2.085714286	FALSE	FALSE	FALSE	1	FALSE	0	Strelka2;Vardict	2	0.2212	104	0	0	NA	3qF2.3	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr3	90190923	90190923	C	T	ENSMUST00000029548.8	5	ENSMUSG00000027939	missense	S/L	1394	Nup210l	ENSMUST00000029548.8:c.4181C>T	ENSMUSP00000029548.4:p.Ser1394Leu	H-2-Kb	8	8	4	RTLLAFPL	RTLSAFPL	NetMHCpan	184	237.9	1.293	226	0.288	202.884	249.781	1.231	490.66	429.13	237.9	184	235.9065504	193.0812048	261.6616044	212.686537	M1_p20	1.957142857	1.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.286	226	0	0	NA	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr4	24521278	24521278	T	C	ENSMUST00000108222.8	5	ENSMUSG00000045751	missense	L/P	385	Mms22l	ENSMUST00000108222.8:c.1154T>C	ENSMUSP00000103857.2:p.Leu385Pro	H-2-Kb	8	5	7	WSFIEEPL	WSFIEELL	SMMPMBEC	169.332	466.38	2.754	297	0.33	397.985	1027.105	2.581	1382.89	595.54	1358	533.1	696.209588	262.8693795	466.380088	169.3323751	M1_p20	0.242857143	0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.331	297	0	0	NA	4qA3	chr4-3172212-60740166	3	2	1	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr4	53083890	53083890	A	G	ENSMUST00000030010.3	1	ENSMUSG00000015243	missense	W/R	648	Abca1	ENSMUST00000030010.3:c.1942T>C	ENSMUSP00000030010.3:p.Trp648Arg	H-2-Kb	8	11	1	RIYSVAVI	WIYSVAVI	SMM	334.765	451.586	1.349	73	0.288	400.859	795.858	1.985	1140.13	619.27	1407.1	446.3	451.5855118	334.7649647	409.0157201	355.4184757	M1_p20	2.442857143	2.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.347	73	0	0	NA	4qB2	chr4-3172212-60740166	3	2	1	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr4	41093679	41093679	A	G	ENSMUST00000055327.7	1	ENSMUSG00000028435	missense	V/A	245	Aqp3	ENSMUST00000055327.7:c.734T>C	ENSMUSP00000055110.7:p.Val245Ala	H-2-Kb	8	6	6	RHWWWAPI	RHWWWVPI	NetMHCpan	222.3	379.8	1.709	38	0.342	438.129	1265.319	2.888	2567.84	683.29	379.8	222.3	1512.655393	523.2870654	1017.981768	352.9717922	M1_p20	-0.171428571	-0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.37	38	0	0	NA	4qA5	chr4-3172212-60740166	3	2	1	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr3	89266743	89266743	T	G	ENSMUST00000107462.7	3	ENSMUSG00000042737	missense	L/V	4	Dpm3	ENSMUST00000107462.7:c.10T>G	ENSMUSP00000103086.1:p.Leu4Val	H-2-Kb	8	4	1	VTQWLWGL	LTQWLWGL	SMM	283.622	1434.63	5.058	61	0.23	404.513	1559.675	3.856	6651.54	1488.78	1453.1	408.4	1434.630303	283.6220554	1666.249377	400.6268017	M1_p20	0.171428571	0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.263	61	0	0	NA	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr3	123479673	123479673	A	G	ENSMUST00000029603.9	1	ENSMUSG00000027978	missense	N/S	306	Prss12	ENSMUST00000029603.9:c.917A>G	ENSMUSP00000029603.8:p.Asn306Ser	H-2-Kb	9	11	1	STYVACRLL	NTYVACRLL	NetMHC	39.19	569.67	14.536	305	0.131	135.345	730.573	5.398	569.67	39.19	439.1	64.1	891.4767066	206.5903351	1337.365144	333.6184037	M1_p20	1.471428571	1.471428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.132	305	0	0	NA	3qG1	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	0.616424961	sgMsh2	cell line
chr4	59911934	59911934	A	G	ENSMUST00000030081.1	1	ENSMUSG00000028386	missense	I/T	426	Slc46a2	ENSMUST00000030081.1:c.1277T>C	ENSMUSP00000030081.1:p.Ile426Thr	H-2-Kb	9	10	2	TTYNKIYQL	TIYNKIYQL	NetMHCpan	49	54.2	1.106	247	0.332	89.965	76.17	0.847	58.53	77.07	54.2	49	122.4926415	145.2479461	93.81018664	102.8608242	M1_p20	-0.742857143	-0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.313	247	0	0	NA	4qB3	chr4-3172212-60740166	3	2	1	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr3	157312902	157312902	C	T	ENSMUST00000074015.10	1	ENSMUSG00000040037	missense	L/F	347	Negr1	ENSMUST00000074015.10:c.1039C>T	ENSMUSP00000073664.4:p.Leu347Phe	H-2-Kb	9	12	9	IFYLKNAIF	IFYLKNAIL	SMM	146.592	86.918	0.593	112	0.196	161.23	88.179	0.547	89.44	172.75	131.7	353.4	86.91805512	146.5919088	86.54659777	149.7097207	M1_p20	0.6	0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	112	0	0	NA	3qH4	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr3	93471188	93471188	CA	C	ENSMUST00000029516.2	1	ENSMUSG00000027908	FS	K/X	400	Tchhl1	ENSMUST00000029516.2:c.1202del	ENSMUSP00000029516.2:p.Lys401ArgfsTer118	H-2-Kb	9	107	0	LSYHLHRVM	NA	NetMHCpan	110.3	NA	NA	91	0.286	210.466	NA	NA	NA	180.91	NA	110.3	NA	292.4893114	NA	240.0214196	M1_p20	-0.328571429	-0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.273	91	0	0	NA	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr3	95008482	95008482	T	C	ENSMUST00000019482.7	1	ENSMUSG00000019338	missense	K/R	993	Zfp687	ENSMUST00000019482.7:c.2978A>G	ENSMUSP00000019482.1:p.Lys993Arg	H-2-Kb	9	8	4	SVKRFPCRL	SVKKFPCRL	NetMHCpan	181.6	255.5	1.407	74	0.23	436.752	462.473	1.059	295.28	204.99	255.5	181.6	629.6656471	668.5132201	679.5947262	729.8775406	M1_p20	-0.771428571	-0.185714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.245	74	0	0	NA	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr4	45307923	45307923	CT	C	ENSMUST00000044673.8	1	ENSMUSG00000035601	FS	L/X	203	Trmt10b	ENSMUST00000044673.8:c.612del	ENSMUSP00000041052.2:p.Pro205LeufsTer8	H-2-Kb	9	9	5	FSLFLWKPL	FSLFPLETL	NetMHCpan	127.2	1483.2	11.66	362	0.359	215.539	984.497	4.568	761.94	209.13	1483.2	127.2	889.4263671	253.577082	1079.567993	221.9473684	M1_p20	1.114285714	1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.358	362	0	0	NA	4qB1	chr4-3172212-60740166	3	2	1	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr3	93471188	93471188	CA	C	ENSMUST00000029516.2	1	ENSMUSG00000027908	FS	K/X	400	Tchhl1	ENSMUST00000029516.2:c.1202del	ENSMUSP00000029516.2:p.Lys401ArgfsTer118	H-2-Kb	9	73	0	SWHHLRSNL	NA	NetMHC	295.49	NA	NA	91	0.286	405.071	NA	NA	NA	295.49	NA	1190.6	NA	309.8203926	NA	500.3224609	M1_p20	-1.085714286	-1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.273	91	0	0	NA	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr3	93471188	93471188	CA	C	ENSMUST00000029516.2	1	ENSMUSG00000027908	FS	K/X	400	Tchhl1	ENSMUST00000029516.2:c.1202del	ENSMUSP00000029516.2:p.Lys401ArgfsTer118	H-2-Kb	9	116	0	RAFVKFPTA	NA	NetMHCpan	209	NA	NA	91	0.286	442.946	NA	NA	NA	308.98	NA	209	NA	576.9125678	NA	594.6343592	M1_p20	0.771428571	0.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.273	91	0	0	NA	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr3	155137385	155137385	AT	A	ENSMUST00000194376.1	1	ENSMUSG00000028182	FS	N/X	298	Lrriq3	ENSMUST00000194376.1:c.897del	ENSMUSP00000142127.1:p.His300ThrfsTer32	H-2-Kb	9	21	0	LTFHQYKGI	NA	NetMHCpan	249.3	NA	NA	279	0.254	334.616	NA	NA	NA	317.47	NA	249.3	NA	377.6678362	NA	351.7628732	M1_p20	-0.714285714	-0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.253	279	0	0	NA	3qH4	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr4	88129016	88129016	T	C	ENSMUST00000097992.9	5	ENSMUSG00000038368	missense	V/A	84	Focad	ENSMUST00000097992.9:c.251T>C	ENSMUSP00000095602.3:p.Val84Ala	H-2-Kb	9	8	4	FSYALNGIL	FSYVLNGIL	NetMHCpan	258.4	215.2	0.833	198	0.419	384.776	261.087	0.679	316.87	483.41	215.2	258.4	255.3347944	403.747643	266.8394274	365.8053055	M1_p20	1.242857143	1.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.414	198	0	0	NA	4qC4	chr4-61672369-145468270	3	2	1	0.9	4.202897461	NA	2	1	sgMsh2	cell line
chr3	89954524	89954524	A	G	ENSMUST00000168276.7	5	ENSMUSG00000060671	missense	F/L	222	Atp8b2	ENSMUST00000168276.7:c.664T>C	ENSMUSP00000128423.1:p.Phe222Leu	H-2-Kb	9	3	9	TLYWKENKL	TLYWKENKF	SMMPMBEC	257.188	444.887	1.73	229	0.21	445.314	945.196	2.123	1418.93	722.43	1306.8	544.6	583.5929005	346.02701	444.8872915	257.1875847	M1_p20	-1.885714286	-1.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.193	229	0	0	NA	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	0.901288011	sgMsh2	cell line
chr3	155137385	155137385	AT	A	ENSMUST00000194376.1	1	ENSMUSG00000028182	FS	N/X	298	Lrriq3	ENSMUST00000194376.1:c.897del	ENSMUSP00000142127.1:p.His300ThrfsTer32	H-2-Kb	9	10	4	VNFTEVGWM	NA	SMMPMBEC	346.937	NA	NA	279	0.254	357.03	NA	NA	NA	962.72	NA	361.6	NA	352.4601324	NA	346.9365057	M1_p20	0.485714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.253	279	0	0	NA	3qH4	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr4	136554214	136554214	T	A	ENSMUST00000105847.7	5	ENSMUSG00000036940	missense	K/M	682	Kdm1a	ENSMUST00000105847.7:c.2045A>T	ENSMUSP00000101473.1:p.Lys682Met	H-2-Db	9	6	6	FGNLNMVVL	FGNLNKVVL	NetMHC	15.68	50.61	3.228	129	0.442	76.126	173.018	2.273	50.61	15.68	144.4	54.4	281.5917975	138.8736979	201.6368945	97.8520661	M1_p20	1.557142857	1.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.43	129	0	0	NA	4qD3	chr4-61672369-145468270	3	2	1	0.9	4.202897461	NA	2	1	sgMsh2	cell line
chr5	34848948	34848948	T	A	ENSMUST00000080036.2	1	ENSMUSG00000029104	missense	H/Q	1400	Htt	ENSMUST00000080036.2:c.4200T>A	ENSMUSP00000078945.2:p.His1400Gln	H-2-Db	9	8	4	NAIQNHIRL	NAIHNHIRL	NetMHCpan	42.5	130.5	3.071	216	0.25	128.892	250.646	1.945	219.7	50.95	130.5	42.5	281.5917975	206.8330804	333.8643134	252.6794949	M1_p20	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.252	216	0	0	NA	5qB2	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr5	30197383	30197383	G	T	ENSMUST00000088117.10	1	ENSMUSG00000067642	missense	T/N	549	Adgrf3	ENSMUST00000088117.10:c.1646C>A	ENSMUSP00000085440.5:p.Thr549Asn	H-2-Db	9	7	5	MSFSNWPLL	MSFSTWPLL	NetMHCpan	20.7	1467.5	70.894	158	0.228	73.626	3415.693	46.393	6870.02	130.22	1467.5	20.7	3950.208326	81.39917439	2881.177403	65.85215625	M1_p20	0.514285714	0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.247	158	0	0	NA	5qB1	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr5	63806698	63806698	A	T	ENSMUST00000159584.2	1	ENSMUSG00000090061	missense	K/N	1208	Nwd2	ENSMUST00000159584.2:c.3624A>T	ENSMUSP00000124712.1:p.Lys1208Asn	H-2-Db	9	7	5	ILICNALSI	ILICKALSI	NetMHCpan	141.1	7481.9	53.026	283	0.187	238.859	9795.44	41.009	18580.86	208.18	7481.9	141.1	8762.337965	269.537999	10828.54237	322.5299134	M1_p20	1.828571429	2.485714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.196	283	0	0	NA	5qC3.1	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	0.915297669	sgMsh2	cell line
chr5	44014873	44014873	T	G	ENSMUST00000074113.12	1	ENSMUSG00000029086	missense	N/T	601	Prom1	ENSMUST00000074113.12:c.1802A>C	ENSMUSP00000073751.6:p.Asn601Thr	H-2-Db	9	11	1	TLNVNIDSI	NLNVNIDSI	SMMPMBEC	207.286	305.893	1.476	149	0.161	238.984	443.405	1.855	575.91	397.55	623.6	227	310.8994831	250.9689537	305.8933249	207.2860138	M1_p20	0.271428571	0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.174	149	0	0	NA	5qB3	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	0.812560176	sgMsh2	cell line
chr4	149106266	149106266	A	G	ENSMUST00000030816.3	1	ENSMUSG00000028974	missense	K/R	84	Dffa	ENSMUST00000030816.3:c.251A>G	ENSMUSP00000030816.3:p.Lys84Arg	H-2-Kb	8	8	4	SNTRFVAL	SNTKFVAL	NetMHC	13.69	27.26	1.991	226	0.31	28.582	49.82	1.743	27.26	13.69	38.3	23.3	61.33946729	33.86413603	84.08915726	46.10414792	M1_p20	0.557142857	0.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe	3	0.308	226	0	0	NA	4qE2	chr4-145892162-156223608	3	2	1	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr5	57721359	57721359	T	C	ENSMUST00000191837.5	1	ENSMUSG00000029108	missense	L/S	752	Pcdh7	ENSMUST00000191837.5:c.2255T>C	ENSMUSP00000142319.1:p.Leu752Ser	H-2-Kb	8	5	7	RNISYTSL	RNISYTLL	NetMHC	17.31	17.09	0.987	344	0.192	37.571	44.968	1.197	17.09	17.31	18.2	19.2	71.73646964	55.94225905	78.83879904	59.94321055	M1_p20	0.171428571	0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.202	344	0	0	NA	5qC1	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	0.943316986	sgMsh2	cell line
chr5	20886561	20886561	A	G	ENSMUST00000115259.2	1	ENSMUSG00000045435	missense	Y/C	108	Tmem60	ENSMUST00000115259.2:c.323A>G	ENSMUSP00000110914.2:p.Tyr108Cys	H-2-Kb	8	9	3	LSCVFIPL	LSYVFIPL	SMMPMBEC	18.739	1.883	0.1	279	0.269	26.189	2.268	0.087	2.35	26.63	3.4	62.9	2.186452264	25.74779247	1.882521739	18.73872337	M1_p20	2.2	2.2	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.265	279	0	0	NA	5qA3	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr5	27760034	27760034	AG	A	ENSMUST00000002291.11	1	ENSMUSG00000002221	FS	P/X	676	Paxip1	ENSMUST00000002291.11:c.2027del	ENSMUSP00000002291.7:p.Pro676LeufsTer25	H-2-Kb	8	16	0	ISRWRSHL	NA	NetMHC	50.3	NA	NA	125	0.304	160.045	NA	NA	NA	50.3	NA	254.8	NA	159.4924025	NA	160.597951	M1_p20	-1.557142857	-1.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.27	125	0	0	NA	5qB1	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr4	96475526	96475526	T	A	ENSMUST00000124729.3	5	ENSMUSG00000082932	missense	E/V	300	Cyp2j8	ENSMUST00000124729.3:c.899A>T	ENSMUSP00000134591.1:p.Glu300Val	H-2-Kb	8	7	5	TSFNVENL	TSFNEENL	SMM	50.669	120.709	2.382	239	0.301	56.152	244.895	4.361	369.08	53.32	374.1	81	120.7090967	50.66872779	96.32521787	58.9847849	M1_p20	-0.071428571	-0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.278	239	0	0	NA	4qC5	chr4-61672369-145468270	3	2	1	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr4	155966486	155966486	T	C	ENSMUST00000024338.4	1	ENSMUSG00000023571	missense	M/T	304	C1qtnf12	ENSMUST00000024338.4:c.911T>C	ENSMUSP00000024338.4:p.Met304Thr	H-2-Kb	8	12	6	SSFSGTLL	SSFSGMLL	NetMHCpan	66.9	50.3	0.752	212	0.41	86.988	70.723	0.813	34.09	71	50.3	66.9	95.22259222	121.8260042	91.14650073	102.9769442	M1_p20	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.396	212	0	0	NA	4qE2	chr4-145892162-156223608	3	2	1	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr4	139640665	139640665	A	G	ENSMUST00000039818.9	1	ENSMUSG00000028737	missense	T/A	306	Aldh4a1	ENSMUST00000039818.9:c.916A>G	ENSMUSP00000043821.9:p.Thr306Ala	H-2-Kb	8	8	4	RFRAFPRL	RFRTFPRL	SMM	54.293	53.179	0.979	62	0.242	87.052	74.246	0.853	78.71	97.59	160.4	151.2	53.17897962	54.29252	69.78145169	76.51384027	M1_p20	0.085714286	0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.275	62	0	0	NA	4qD3	chr4-61672369-145468270	3	2	1	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr5	30197383	30197383	G	T	ENSMUST00000088117.10	1	ENSMUSG00000067642	missense	T/N	549	Adgrf3	ENSMUST00000088117.10:c.1646C>A	ENSMUSP00000085440.5:p.Thr549Asn	H-2-Kb	8	7	5	MSFSNWPL	MSFSTWPL	SMMPMBEC	47.945	45.998	0.959	158	0.228	50.143	47.138	0.94	100.15	109.94	42.7	49.5	48.27696948	50.78553127	45.99811133	47.94463315	M1_p20	-0.142857143	-0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.247	158	0	0	NA	5qB1	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr4	115068554	115068554	TC	T	ENSMUST00000030489.8	1	ENSMUSG00000028717	FS	I/X	273	Tal1	ENSMUST00000030489.8:c.824del	ENSMUSP00000030489.2:p.Pro275LeufsTer82	H-2-Kb	8	77	0	QAGAFRPL	NA	NetMHC	137.79	NA	NA	26	0.231	228.578	NA	NA	NA	137.79	NA	588.8	NA	207.8452003	NA	249.310173	M1_p20	0.528571429	0.528571429	TRUE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2308	26	0	0	NA	4qD1	chr4-61672369-145468270	3	2	1	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr4	120886945	120886945	C	T	ENSMUST00000071093.8	1	ENSMUSG00000032890	missense	P/L	124	Rims3	ENSMUST00000071093.8:c.371C>T	ENSMUSP00000068178.2:p.Pro124Leu	H-2-Kb	8	7	5	TFIFLTRL	TFIFPTRL	NetMHCpan	49.6	106	2.137	91	0.198	194.02	549.467	2.832	531.73	162.75	106	49.6	567.204934	225.2890066	685.0779666	240.8463117	M1_p20	1.785714286	1.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.203	91	0	0	NA	4qD2.2	chr4-61672369-145468270	3	2	1	0.9	4.202897461	NA	1	0.947986872	sgMsh2	cell line
chr5	16359028	16359028	T	C	ENSMUST00000039370.13	1	ENSMUSG00000040118	missense	V/A	903	Cacna2d1	ENSMUST00000039370.13:c.2708T>C	ENSMUSP00000049457.7:p.Val903Ala	H-2-Kb	8	4	8	KSYDYQSA	KSYDYQSV	NetMHCpan	154.7	15.4	0.1	152	0.263	204.33	27.778	0.136	12.68	168.92	15.4	154.7	40.15503419	239.7397234	51.49202839	247.5939338	M1_p20	-1.342857143	-1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.278	152	0	0	NA	5qA3	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr5	34848948	34848948	T	A	ENSMUST00000080036.2	1	ENSMUSG00000029104	missense	H/Q	1400	Htt	ENSMUST00000080036.2:c.4200T>A	ENSMUSP00000078945.2:p.His1400Gln	H-2-Kb	8	9	3	AIQNHIRL	AIHNHIRL	SMM	233.206	203.582	0.873	216	0.25	335.761	210.611	0.627	187.86	352.56	450.7	1017.2	203.5822922	233.2061504	217.6406428	318.9627742	M1_p20	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.252	216	0	0	NA	5qB2	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr4	154341810	154341810	G	A	ENSMUST00000030902.12	1	ENSMUSG00000039410	missense	P/L	506	Prdm16	ENSMUST00000030902.12:c.1517C>T	ENSMUSP00000030902.6:p.Pro506Leu	H-2-Kb	8	9	3	APLAFPAL	APPAFPAL	SMM	98.116	230.006	2.344	18	0.556	259.654	642.991	2.476	955.05	390.56	1465.8	847.8	230.0064421	98.11603738	330.9329418	128.7478543	M1_p20	1.542857143	1.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.562	18	0	0	NA	4qE2	chr4-145892162-156223608	3	2	1	0.9	4.202897461	NA	2	1	sgMsh2	cell line
chr5	3673162	3673162	T	C	ENSMUST00000014673.8	1	ENSMUSG00000014529	missense	I/T	231	Tmbim7	ENSMUST00000014673.8:c.692T>C	ENSMUSP00000014673.2:p.Ile231Thr	H-2-Kb	8	7	5	LIYGTIAL	LIYGIIAL	SMMPMBEC	338.641	366.218	1.081	299	0.264	379.899	400.735	1.055	501.32	404.38	344.3	444	435.2512229	355.4184757	366.2182643	338.6413603	M1_p20	1.742857143	1.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.244	299	0	0	NA	5qA1	chr5-3344382-14859185	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr5	3673162	3673162	T	C	ENSMUST00000014673.8	1	ENSMUSG00000014529	missense	I/T	231	Tmbim7	ENSMUST00000014673.8:c.692T>C	ENSMUSP00000014673.2:p.Ile231Thr	H-2-Kb	8	5	7	VLLIYGTI	VLLIYGII	NetMHCpan	142	579.7	4.082	299	0.264	310.354	756.542	2.438	1677.7	445.42	579.7	142	772.2181412	337.0854446	740.8665723	283.6220554	M1_p20	2.028571429	2.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.244	299	0	0	NA	5qA1	chr5-3344382-14859185	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr5	29478259	29478259	T	A	ENSMUST00000165512.3	1	ENSMUSG00000001566	missense	N/I	6	Mnx1	ENSMUST00000165512.3:c.17A>T	ENSMUSP00000129503.2:p.Asn6Ile	H-2-Kb	8	5	2	KIFRIDAL	KNFRIDAL	NetMHCpan	239.7	176.2	0.735	44	0.114	312.442	360.883	1.155	460.29	468.11	176.2	239.7	352.1599796	316.0385059	369.6068402	308.8445912	M1_p20	1.342857143	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.178	44	0	0	NA	5qB1	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	0.83123972	sgMsh2	cell line
chr4	154341810	154341810	G	A	ENSMUST00000030902.12	1	ENSMUSG00000039410	missense	P/L	506	Prdm16	ENSMUST00000030902.12:c.1517C>T	ENSMUSP00000030902.6:p.Pro506Leu	H-2-Kb	8	4	8	LPFSAAPL	LPFSAAPP	SMMPMBEC	114.483	2969.888	25.942	18	0.556	296.236	13101.944	44.228	30863.34	472.87	23234	1124.1	2895.609548	119.6024291	2969.887511	114.482736	M1_p20	0.885714286	0.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.562	18	0	0	NA	4qE2	chr4-145892162-156223608	3	2	1	0.9	4.202897461	NA	2	1	sgMsh2	cell line
chr5	24320084	24320084	TG	T	ENSMUST00000036092.9	1	ENSMUSG00000038319	FS	P/X	1135	Kcnh2	ENSMUST00000036092.9:c.3405del	ENSMUSP00000047705.7:p.Thr1136LeufsTer131	H-2-Kb	8	48	0	AHPGFRAL	NA	SMM	380.838	NA	NA	18	0.278	492.013	NA	NA	NA	492.28	NA	1903.8	NA	380.8377582	NA	491.7450535	M1_p20	-0.185714286	-0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2778	18	0	0	NA	5qA3	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr4	143895385	143895385	T	C	ENSMUST00000105767.1	5	ENSMUSG00000078512	missense	I/V	467	Pramef6	ENSMUST00000105767.1:c.1399A>G	ENSMUSP00000101393.1:p.Ile467Val	H-2-Kb	9	13	2	CVYSFVGNI	CIYSFVGNI	NetMHC	23.45	22.06	0.941	332	0.358	90.759	96.799	1.067	22.06	23.45	42.9	35.6	150.6988715	145.9183802	252.4933823	247.8848587	M1_p20	0.785714286	1.6	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.347	332	0	0	NA	4qE1	chr4-61672369-145468270	3	2	1	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr5	30197383	30197383	G	T	ENSMUST00000088117.10	1	ENSMUSG00000067642	missense	T/N	549	Adgrf3	ENSMUST00000088117.10:c.1646C>A	ENSMUSP00000085440.5:p.Thr549Asn	H-2-Kb	9	7	5	MSFSNWPLL	MSFSTWPLL	NetMHC	29.95	32.23	1.076	158	0.228	44.822	47.855	1.068	32.23	29.95	34.6	30.2	61.10967866	59.44427026	104.5321782	81.32985537	M1_p20	0.514285714	0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.247	158	0	0	NA	5qB1	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr4	124942369	124942369	T	C	ENSMUST00000094769.12	1	ENSMUSG00000044730	missense	Y/H	158	9930104L06Rik	ENSMUST00000094769.12:c.472T>C	ENSMUSP00000154851.1:p.Tyr158His	H-2-Kb	9	4	8	SSYLKRKHL	SSYLKRKYL	NetMHC	33.01	28.82	0.873	96	0.292	69.015	66.097	0.958	28.82	33.01	64.1	72.7	68.09418088	65.32960014	84.382036	77.13473645	M1_p20	-1.314285714	-1.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.286	96	0	0	NA	4qD2.2	chr4-61672369-145468270	3	2	1	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr4	120886945	120886945	C	T	ENSMUST00000071093.8	1	ENSMUSG00000032890	missense	P/L	124	Rims3	ENSMUST00000071093.8:c.371C>T	ENSMUSP00000068178.2:p.Pro124Leu	H-2-Kb	9	6	6	GTFIFLTRL	GTFIFPTRL	NetMHCpan	28.1	39.6	1.409	91	0.198	60.436	144.364	2.389	86.31	36.1	39.6	28.1	215.332707	91.43448014	202.4184057	84.77152578	M1_p20	1.785714286	1.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.203	91	0	0	NA	4qD2.2	chr4-61672369-145468270	3	2	1	0.9	4.202897461	NA	1	0.947986872	sgMsh2	cell line
chr4	154341810	154341810	G	A	ENSMUST00000030902.12	1	ENSMUSG00000039410	missense	P/L	506	Prdm16	ENSMUST00000030902.12:c.1517C>T	ENSMUSP00000030902.6:p.Pro506Leu	H-2-Kb	9	8	4	AAPLAFPAL	AAPPAFPAL	NetMHCpan	65.2	98.4	1.509	18	0.556	246.155	434.492	1.765	155.95	68.56	98.4	65.2	713.0336075	423.7502818	982.3132453	598.7561676	M1_p20	1.542857143	1.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.562	18	0	0	NA	4qE2	chr4-145892162-156223608	3	2	1	0.9	4.202897461	NA	2	1	sgMsh2	cell line
chr5	52848016	52848016	A	G	ENSMUST00000031072.13	1	ENSMUSG00000029176	missense	Q/R	301	Anapc4	ENSMUST00000031072.13:c.902A>G	ENSMUSP00000031072.7:p.Gln301Arg	H-2-Kb	9	9	3	SVRDEFMHL	SVQDEFMHL	NetMHCpan	107.4	185.5	1.727	59	0.169	228.321	411.963	1.804	155.92	116.93	185.5	107.4	638.4251688	339.7113053	843.82036	474.5150595	M1_p20	-0.885714286	-0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.184	59	0	0	NA	5qC1	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	0.859259037	sgMsh2	cell line
chr4	104679526	104679526	GA	G	ENSMUST00000106830.8	1	ENSMUSG00000028519	FS	E/X	171	Dab1	ENSMUST00000106830.8:c.518del	ENSMUSP00000102443.2:p.Lys173ArgfsTer68	H-2-Kb	9	57	0	RTFTRFPPA	NA	NetMHCpan	78.3	NA	NA	93	0.226	222.469	NA	NA	NA	135.73	NA	78.3	NA	419.8653158	NA	309.2074862	M1_p20	-0.142857143	-0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.21	93	0	0	NA	4qC6	chr4-61672369-145468270	3	2	1	0.9	4.202897461	NA	1	0.980676074	sgMsh2	cell line
chr5	24320084	24320084	TG	T	ENSMUST00000036092.9	1	ENSMUSG00000038319	FS	P/X	1135	Kcnh2	ENSMUST00000036092.9:c.3405del	ENSMUSP00000047705.7:p.Thr1136LeufsTer131	H-2-Kb	9	47	0	VAHPGFRAL	NA	NetMHC	146.33	NA	NA	18	0.278	300.844	NA	NA	NA	146.33	NA	175	NA	426.6875784	NA	463.713778	M1_p20	-0.185714286	-0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2778	18	0	0	NA	5qA3	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr4	143895385	143895385	T	C	ENSMUST00000105767.1	5	ENSMUSG00000078512	missense	I/V	467	Pramef6	ENSMUST00000105767.1:c.1399A>G	ENSMUSP00000101393.1:p.Ile467Val	H-2-Kb	9	10	5	RNFCVYSFV	RNFCIYSFV	NetMHCpan	85.7	73	0.852	332	0.358	357.494	308.946	0.864	234.97	248.06	73	85.7	382.9217191	472.1826226	388.3738676	466.9280884	M1_p20	2.057142857	2.057142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.347	332	0	0	NA	4qE1	chr4-61672369-145468270	3	2	1	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr5	3673162	3673162	T	C	ENSMUST00000014673.8	1	ENSMUSG00000014529	missense	I/T	231	Tmbim7	ENSMUST00000014673.8:c.692T>C	ENSMUSP00000014673.2:p.Ile231Thr	H-2-Kb	9	7	5	LIYGTIALV	LIYGIIALV	NetMHC	255.57	661.63	2.589	299	0.264	399.072	568.543	1.425	661.63	255.57	1069.9	902.4	475.4556362	346.02701	472.3348608	452.1161284	M1_p20	1.7	1.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.244	299	0	0	NA	5qA1	chr5-3344382-14859185	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr5	29478259	29478259	T	A	ENSMUST00000165512.3	1	ENSMUSG00000001566	missense	N/I	6	Mnx1	ENSMUST00000165512.3:c.17A>T	ENSMUSP00000129503.2:p.Asn6Ile	H-2-Kb	9	5	2	KIFRIDALL	KNFRIDALL	NetMHC	294.87	154.93	0.525	44	0.114	482.133	349.528	0.725	154.93	294.87	223.6	334.6	475.4556362	629.6656471	486.6872848	649.007925	M1_p20	1.242857143	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.178	44	0	0	NA	5qB1	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	0.83123972	sgMsh2	cell line
chr5	16359028	16359028	T	C	ENSMUST00000039370.13	1	ENSMUSG00000040118	missense	V/A	903	Cacna2d1	ENSMUST00000039370.13:c.2708T>C	ENSMUSP00000049457.7:p.Val903Ala	H-2-Kb	9	4	8	KSYDYQSAC	KSYDYQSVC	NetMHCpan	276.2	497	1.799	152	0.263	416.065	787.162	1.892	922.32	305.81	497	276.2	924.9324152	656.3114787	652.0036095	526.3201534	M1_p20	-0.871428571	-0.871428571	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.278	152	0	0	NA	5qA3	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr4	139640665	139640665	A	G	ENSMUST00000039818.9	1	ENSMUSG00000028737	missense	T/A	306	Aldh4a1	ENSMUST00000039818.9:c.916A>G	ENSMUSP00000043821.9:p.Thr306Ala	H-2-Kb	9	4	8	QNLDRFRAF	QNLDRFRTF	SMM	226.001	239.944	1.062	62	0.242	312.457	354.948	1.136	385.37	323.44	1098.6	1301.5	239.9440583	226.0008122	324.526376	301.4740949	M1_p20	-0.185714286	-0.185714286	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.275	62	0	0	NA	4qD3	chr4-61672369-145468270	3	2	1	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr4	107977643	107977643	C	T	ENSMUST00000238795.1	NA	ENSMUSG00000008932	missense	R/W	69	Slc1a7	ENSMUST00000238795.1:c.205C>T	ENSMUSP00000158982.1:p.Arg69Trp	H-2-Kb	9	10	2	MWMLKMLIL	MRMLKMLIL	SMM	197.747	1199.803	6.067	97	0.34	326.974	1997.963	6.11	2698	356.61	2787.1	914.5	1199.803156	197.7470439	1297.926202	297.3377153	M1_p20	2.257142857	2.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.342	97	0	0	NA	4qC7	chr4-61672369-145468270	3	2	1	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr4	104679526	104679526	GA	G	ENSMUST00000106830.8	1	ENSMUSG00000028519	FS	E/X	171	Dab1	ENSMUST00000106830.8:c.518del	ENSMUSP00000102443.2:p.Lys173ArgfsTer68	H-2-Kb	9	24	0	CTRPFWKRM	NA	NetMHCpan	330.5	NA	NA	93	0.226	394.527	NA	NA	NA	367.25	NA	330.5	NA	421.8033261	NA	629.8686601	M1_p20	-1.528571429	-0.9	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.21	93	0	0	NA	4qC6	chr4-61672369-145468270	3	2	1	0.9	4.202897461	NA	1	0.980676074	sgMsh2	cell line
chr5	3673162	3673162	T	C	ENSMUST00000014673.8	1	ENSMUSG00000014529	missense	I/T	231	Tmbim7	ENSMUST00000014673.8:c.692T>C	ENSMUSP00000014673.2:p.Ile231Thr	H-2-Kb	9	4	8	SVLLIYGTI	SVLLIYGII	NetMHCpan	276.2	1014.9	3.675	299	0.264	446.055	804.767	1.804	1087.34	388.32	1014.9	276.2	565.0800826	505.9527957	594.6343592	503.7905305	M1_p20	2.028571429	2.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.244	299	0	0	NA	5qA1	chr5-3344382-14859185	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr5	57721359	57721359	T	C	ENSMUST00000191837.5	1	ENSMUSG00000029108	missense	L/S	752	Pcdh7	ENSMUST00000191837.5:c.2255T>C	ENSMUSP00000142319.1:p.Leu752Ser	H-2-Kb	9	7	5	ISYTSLPPS	ISYTLLPPS	SMM	151.743	109.172	0.719	344	0.192	424.609	273.635	0.644	451.89	632.75	392.3	624.7	109.1716816	151.7434661	154.9708446	224.5173978	M1_p20	-0.428571429	0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.202	344	0	0	NA	5qC1	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	0.943316986	sgMsh2	cell line
chr5	31040436	31040436	T	C	ENSMUST00000114668.6	1	ENSMUSG00000006641	missense	I/V	310	Slc5a6	ENSMUST00000114668.6:c.928A>G	ENSMUSP00000110316.1:p.Ile310Val	H-2-Kb	9	11	1	VGLVMFAYY	IGLVMFAYY	SMM	176.242	259.484	1.472	117	0.274	453.049	578.617	1.277	846.6	671.54	1237.9	1273.8	259.483651	176.2422384	310.6347231	234.557865	M1_p20	1.7	2.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.267	117	0	0	NA	5qB1	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr5	107821791	107821791	G	T	ENSMUST00000112642.7	1	ENSMUSG00000011831	missense	H/N	129	Evi5	ENSMUST00000112642.7:c.385C>A	ENSMUSP00000108261.1:p.His129Asn	H-2-Db	9	4	8	SASSNLSNL	SASSNLSHL	NetMHCpan	125.3	51.8	0.413	197	0.254	187.659	150.94	0.804	157.13	359.48	51.8	125.3	144.7504758	168.5077967	174.8115003	206.8092692	M1_p20	-0.257142857	-0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.262	197	0	0	NA	5qF	chr5-95270364-108777740	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr6	13193189	13193189	T	C	ENSMUST00000054530.6	1	ENSMUSG00000079679	missense	T/A	384	Vwde	ENSMUST00000054530.6:c.1150A>G	ENSMUSP00000058110.5:p.Thr384Ala	H-2-Kb	8	6	6	AVLYYAAV	AVLYYTAV	NetMHC	18.5	70.64	3.818	243	0.103	51.667	133.063	2.575	70.64	18.5	72.6	37	198.0341096	69.30107956	193.5263029	66.33458249	M1_p20	1.885714286	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.104	243	0	0	NA	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.485668151	sgMsh2	cell line
chr5	124755780	124755780	T	C	ENSMUST00000058440.11	5	ENSMUSG00000038011	missense	F/S	916	Dnah10	ENSMUST00000058440.11:c.2747T>C	ENSMUSP00000062995.8:p.Phe916Ser	H-2-Kb	8	8	4	VSLSRFPV	VSLFRFPV	NetMHC	27.04	29.84	1.104	66	0.379	125.607	112.13	0.893	29.84	27.04	28.7	48.1	194.4195797	211.7093311	198.4906254	203.114066	M1_p20	0.442857143	0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.381	66	0	0	NA	5qF	chr5-110105137-151647482	4	2	2	0.9	4.202897461	NA	2	1	sgMsh2	cell line
chr5	122941048	122941048	T	C	ENSMUST00000046073.15	1	ENSMUSG00000029475	missense	T/A	287	Kdm2b	ENSMUST00000046073.15:c.859A>G	ENSMUSP00000038229.9:p.Thr287Ala	H-2-Kb	8	6	6	IHAVYAPV	IHAVYTPV	NetMHC	32.72	149.66	4.574	111	0.279	68.188	174.831	2.564	149.66	32.72	167.8	91.6	181.861178	63.64144033	212.1973715	72.73442335	M1_p20	0.842857143	0.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.273	111	0	0	NA	5qF	chr5-110105137-151647482	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr5	110277756	110277756	A	G	ENSMUST00000031472.11	1	ENSMUSG00000029499	missense	F/L	138	Pxmp2	ENSMUST00000031472.11:c.412T>C	ENSMUSP00000031472.5:p.Phe138Leu	H-2-Kb	8	8	4	VSVLVAKM	VSVFVAKM	NetMHC	116.68	141.33	1.211	187	0.144	223.541	229.414	1.026	141.33	116.68	47.9	183	323.3999884	288.2305431	317.4972734	264.0827294	M1_p20	1.6	1.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.147	187	0	0	NA	5qF	chr5-110105137-151647482	4	2	2	0.9	4.202897461	NA	1	0.686473252	sgMsh2	cell line
chr5	86538011	86538011	T	C	ENSMUST00000116553.8	1	ENSMUSG00000048764	missense	M/V	166	Tmprss11f	ENSMUST00000116553.8:c.496A>G	ENSMUSP00000112252.2:p.Met166Val	H-2-Kb	8	9	3	ISVPSFSL	ISMPSFSL	NetMHCpan	102.9	36.1	0.351	197	0.249	207.483	135.317	0.652	55.98	137.8	36.1	102.9	214.6545013	277.1660292	219.1492557	335.5366776	M1_p20	0.971428571	1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.248	197	0	0	NA	5qE1	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr6	35270381	35270381	A	G	ENSMUST00000031868.4	1	ENSMUSG00000029843	missense	I/T	568	Slc13a4	ENSMUST00000031868.4:c.1703T>C	ENSMUSP00000031868.4:p.Ile568Thr	H-2-Kb	8	11	1	TVFSYGHC	IVFSYGHC	SMMPMBEC	126.398	45.787	0.362	199	0.075	145.752	48.403	0.332	38.66	171.24	51.8	148.7	51.01994663	142.8038776	45.7867692	126.3979412	M1_p20	0.542857143	0.542857143	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.087	199	0	0	NA	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.406280088	sgMsh2	cell line
chr6	30815960	30815960	A	G	ENSMUST00000048774.12	1	ENSMUSG00000025607	missense	V/A	480	Copg2	ENSMUST00000048774.12:c.1439T>C	ENSMUSP00000038368.6:p.Val480Ala	H-2-Kb	8	6	6	FIFNRAVL	FIFNRVVL	SMM	138.912	401.55	2.891	217	0.281	159.887	404.813	2.532	524.31	178.28	359.2	181.6	401.5503419	138.9120754	408.0750101	141.4946437	M1_p20	1.3	1.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.293	217	0	0	NA	6qA3.3	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	2	1	sgMsh2	cell line
chr5	109086534	109086534	T	G	ENSMUST00000095922.4	5	ENSMUSG00000090688	missense	K/T	604	Vmn2r12	ENSMUST00000095922.4:c.1811A>C	ENSMUSP00000093612.3:p.Lys604Thr	H-2-Kb	8	10	2	VTYKDTPI	VKYKDTPI	SMMPMBEC	179.779	1032.143	5.741	1139	0.205	209.135	2376.682	11.364	3592.61	206.56	4454.8	252.5	1160.753495	211.7093311	1032.143305	179.7794304	M1_p20	-1.028571429	-1.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.214	1139	0	0	NA	5qF	chr5-108778611-110105136	5	3	2	0.9	4.202897461	NA	1	0.999355619	sgMsh2	cell line
chr6	37986596	37986596	A	G	ENSMUST00000096040.10	1	ENSMUSG00000029830	missense	S/P	459	Svopl	ENSMUST00000096040.10:c.1375T>C	ENSMUSP00000093743.4:p.Ser459Pro	H-2-Kb	8	9	3	SAPFLGAL	SASFLGAL	NetMHCpan	144	277.8	1.929	208	0.317	357.894	799.851	2.235	422.8	276.51	277.8	144	1176.901185	439.2785529	1464.670721	606.3732022	M1_p20	1.714285714	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.314	208	0	0	NA	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	2	1	sgMsh2	cell line
chr5	123758488	123758488	A	G	ENSMUST00000031366.11	1	ENSMUSG00000029414	missense	N/D	138	Kntc1	ENSMUST00000031366.11:c.412A>G	ENSMUSP00000031366.7:p.Asn138Asp	H-2-Kb	8	5	7	SQRTYRDL	SQRTYRNL	SMM	239.74	37.217	0.155	187	0.476	352.064	42.914	0.122	25.66	412.56	218.3	1756.2	37.21688324	239.7397234	48.61160944	291.5680954	M1_p20	-2.028571429	-2.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.479	187	0	0	NA	5qF	chr5-110105137-151647482	4	2	2	0.9	4.202897461	NA	2	1	sgMsh2	cell line
chr6	38395159	38395159	A	G	ENSMUST00000162554.7	1	ENSMUSG00000056832	missense	N/S	228	Ttc26	ENSMUST00000162554.7:c.683A>G	ENSMUSP00000124369.1:p.Asn228Ser	H-2-Kb	8	8	4	KACSHFRL	KACNHFRL	SMMPMBEC	238.089	262.869	1.104	319	0.16	424.535	436.945	1.029	611.02	603.18	792.8	636.8	253.9451951	245.8895091	262.8693795	238.0893668	M1_p20	0.342857143	0.342857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.168	319	0	0	NA	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.784540859	sgMsh2	cell line
chr5	87694728	87694728	C	T	ENSMUST00000197422.4	1	ENSMUSG00000063157	missense	A/T	147	Csn2	ENSMUST00000197422.4:c.439G>A	ENSMUSP00000143341.1:p.Ala147Thr	H-2-Kb	8	9	3	SLTSLANL	SLASLANL	SMM	381.716	341.775	0.895	111	0.378	487.6	375.638	0.77	720.32	664.91	348.8	569	341.7747702	381.7156799	402.476011	406.2000757	M1_p20	1.171428571	1.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.4	111	0	0	NA	5qE1	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	2	1	sgMsh2	cell line
chr6	30815960	30815960	A	G	ENSMUST00000048774.12	1	ENSMUSG00000025607	missense	V/A	480	Copg2	ENSMUST00000048774.12:c.1439T>C	ENSMUSP00000038368.6:p.Val480Ala	H-2-Kb	8	4	8	IRFIFNRA	IRFIFNRV	SMMPMBEC	232.135	48.277	0.208	217	0.281	482.306	47.673	0.099	40.71	683.59	149.1	1240.7	47.06954498	281.0217928	48.27696948	232.1346655	M1_p20	-0.085714286	0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.293	217	0	0	NA	6qA3.3	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	2	1	sgMsh2	cell line
chr6	13193189	13193189	T	C	ENSMUST00000054530.6	1	ENSMUSG00000079679	missense	T/A	384	Vwde	ENSMUST00000054530.6:c.1150A>G	ENSMUSP00000058110.5:p.Thr384Ala	H-2-Kb	9	5	7	QAVLYYAAV	QAVLYYTAV	NetMHC	15.98	41.44	2.593	243	0.103	75.31	108.396	1.439	41.44	15.98	80.3	48.5	136.4928808	102.1198104	174.2809827	128.0117987	M1_p20	1.885714286	1.885714286	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.104	243	0	0	NA	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.485668151	sgMsh2	cell line
chr6	37986596	37986596	A	G	ENSMUST00000096040.10	1	ENSMUSG00000029830	missense	S/P	459	Svopl	ENSMUST00000096040.10:c.1375T>C	ENSMUSP00000093743.4:p.Ser459Pro	H-2-Kb	9	8	4	MSAPFLGAL	MSASFLGAL	NetMHCpan	54.7	51.2	0.936	208	0.317	157.114	100.603	0.64	34.34	56.53	51.2	54.7	150.006473	257.6973782	231.3396105	329.0409876	M1_p20	1.714285714	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.314	208	0	0	NA	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	2	1	sgMsh2	cell line
chr5	101944143	101944143	T	A	ENSMUST00000053177.13	1	ENSMUSG00000043940	missense	K/N	443	Wdfy3	ENSMUST00000053177.13:c.1329A>T	ENSMUSP00000052607.7:p.Lys443Asn	H-2-Kb	9	8	4	VQNNYFEML	VQNKYFEML	NetMHC	62.66	107.77	1.72	118	0.339	165.336	170.625	1.032	107.77	62.66	106.6	107.7	272.3391013	275.4926395	233.4801695	222.9718309	M1_p20	-0.471428571	-0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.348	118	0	0	NA	5qE5	chr5-95270364-108777740	4	2	2	0.9	4.202897461	NA	2	1	sgMsh2	cell line
chr6	13836280	13836280	CA	C	ENSMUST00000060442.13	1	ENSMUSG00000048216	FS	F/X	208	Gpr85	ENSMUST00000060442.13:c.624del	ENSMUSP00000053837.7:p.Phe208LeufsTer8	H-2-Kb	9	3	9	LVYLKLIFL	LVYLKLIFF	SMM	87.521	147.608	1.687	146	0.178	94.659	204.397	2.159	236.11	89.49	1543	251.3	147.6080354	87.5205423	172.683165	99.82745515	M1_p20	1.928571429	2.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.173	146	0	0	NA	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.80789029	sgMsh2	cell line
chr5	137758482	137758482	TG	T	ENSMUST00000110985.1	2	ENSMUSG00000029723	FS	L/X	57	Tsc22d4	ENSMUST00000110985.1:c.177del	ENSMUSP00000106613.1:p.Pro60GlnfsTer18	H-2-Kb	9	22	0	VGWTKAFSL	NA	NetMHCpan	103.3	NA	NA	41	0.561	321.493	NA	NA	NA	216.16	NA	103.3	NA	472.1826226	NA	426.8251484	M1_p20	0.3	0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.552	41	0	0	NA	5qG2	chr5-110105137-151647482	4	2	2	0.9	4.202897461	NA	2	1	sgMsh2	cell line
chr5	101944090	101944090	T	C	ENSMUST00000053177.13	1	ENSMUSG00000043940	missense	K/R	461	Wdfy3	ENSMUST00000053177.13:c.1382A>G	ENSMUSP00000052607.7:p.Lys461Arg	H-2-Kb	9	5	7	LNYIPCREL	LNYIPCKEL	NetMHCpan	162.8	323.2	1.985	147	0.327	262.115	363.046	1.385	484.84	218.66	323.2	162.8	341.2793414	305.5694975	384.8132346	375.1889162	M1_p20	-0.014285714	-0.014285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.323	147	0	0	NA	5qE5	chr5-95270364-108777740	4	2	2	0.9	4.202897461	NA	2	1	sgMsh2	cell line
chr5	124755780	124755780	T	C	ENSMUST00000058440.11	5	ENSMUSG00000038011	missense	F/S	916	Dnah10	ENSMUST00000058440.11:c.2747T>C	ENSMUSP00000062995.8:p.Phe916Ser	H-2-Kb	9	8	4	VSLSRFPVA	VSLFRFPVA	SMMPMBEC	213.919	176.299	0.824	66	0.379	226.366	215.523	0.952	339.88	251.74	166.5	220.4	254.7475407	232.3325184	176.2990613	213.9193154	M1_p20	0.814285714	0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.381	66	0	0	NA	5qF	chr5-110105137-151647482	4	2	2	0.9	4.202897461	NA	2	1	sgMsh2	cell line
chr6	57600007	57600007	T	C	ENSMUST00000031817.9	1	ENSMUSG00000029798	missense	L/P	235	Herc6	ENSMUST00000031817.9:c.704T>C	ENSMUSP00000031817.8:p.Leu235Pro	H-2-Db	9	6	6	GALKNPSVI	GALKNLSVI	NetMHC	13.46	7.99	0.594	283	0.332	47.099	27.26	0.579	7.99	13.46	16.8	37.5	48.2636319	70.24574131	37.71985373	56.6982951	M1_p20	0.385714286	0.385714286	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.335	283	0	0	NA	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	2	1	sgMsh2	cell line
chr6	107567567	107567567	A	G	ENSMUST00000049285.9	1	ENSMUSG00000034648	missense	N/D	109	Lrrn1	ENSMUST00000049285.9:c.325A>G	ENSMUSP00000037096.8:p.Asn109Asp	H-2-Db	9	4	8	FSQNNFTDI	FSQNNFTNI	NetMHC	98.08	74.23	0.757	203	0.236	115.299	90.521	0.785	74.23	98.08	73.3	114.3	106.8119884	136.3389673	112.3492041	116.2973985	M1_p20	-1.057142857	-0.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.237	203	0	0	NA	6qE1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	2	1	sgMsh2	cell line
chr6	42286884	42286884	TG	T	ENSMUST00000031894.12	1	ENSMUSG00000029862	FS	G/X	40	Clcn1	ENSMUST00000031894.12:c.122del	ENSMUSP00000031894.6:p.Gly41AlafsTer70	H-2-Db	9	65	0	TTILNVKTV	NA	NetMHCpan	370.5	NA	NA	87	0.138	457.664	NA	NA	NA	742.55	NA	370.5	NA	495.0168702	NA	420.3102682	M1_p20	1.228571429	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.144	87	0	0	NA	6qB2.1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.672463594	sgMsh2	cell line
chr6	66612495	66612495	GA	G	ENSMUST00000227418.1	NA	ENSMUSG00000059375	FS	F/X	25	Vmn1r33	ENSMUST00000227418.1:c.74del	ENSMUSP00000153840.1:p.Phe25SerfsTer5	H-2-Kb	8	6	6	IFLLFSTL	IFLLFFYT	SMM	9.767	162.458	16.634	471	0.151	11.025	714.944	64.849	1267.43	10.68	4267.2	18.9	162.4575876	9.766523514	121.2662646	11.36946424	M1_p20	2.214285714	2.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.142	471	0	0	NA	6qC1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.663123822	sgMsh2	cell line
chr6	134451069	134451069	T	C	ENSMUST00000032322.14	1	ENSMUSG00000030201	missense	Y/C	1520	Lrp6	ENSMUST00000032322.14:c.4559A>G	ENSMUSP00000032322.8:p.Tyr1520Cys	H-2-Kb	8	4	8	RSYSYRPC	RSYSYRPY	NetMHC	22.95	107.06	4.665	114	0.14	38.31	109.727	2.864	107.06	22.95	418.8	63.3	112.3931906	35.05419514	72.90209351	41.56616909	M1_p20	-1.114285714	-1.114285714	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.13	114	0	0	NA	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.607085189	sgMsh2	cell line
chr6	114302629	114302629	A	G	ENSMUST00000032454.7	1	ENSMUSG00000030310	missense	K/R	123	Slc6a1	ENSMUST00000032454.7:c.368A>G	ENSMUSP00000032454.5:p.Lys123Arg	H-2-Kb	8	6	6	LAPMFRGV	LAPMFKGV	NetMHC	85.05	307.58	3.616	107	0.168	326.028	633.35	1.943	307.58	85.05	408.2	184.6	1126.522836	545.4312289	858.499408	467.4552051	M1_p20	0.6	0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.166	107	0	0	NA	6qE3	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.775201087	sgMsh2	cell line
chr6	134451076	134451076	T	C	ENSMUST00000032322.14	1	ENSMUSG00000030201	missense	R/G	1518	Lrp6	ENSMUST00000032322.14:c.4552A>G	ENSMUSP00000032322.8:p.Arg1518Gly	H-2-Kb	8	6	6	RSYSYGPY	RSYSYRPY	SMMPMBEC	72.902	72.902	1	100	0.16	122.156	109.727	0.898	107.06	123.88	418.8	436.7	112.3931906	120.4314735	72.90209351	72.90209351	M1_p20	-1.071428571	-1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.141	100	0	0	NA	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.658453936	sgMsh2	cell line
chr6	134451069	134451069	T	C	ENSMUST00000032322.14	1	ENSMUSG00000030201	missense	Y/C	1520	Lrp6	ENSMUST00000032322.14:c.4559A>G	ENSMUSP00000032322.8:p.Tyr1520Cys	H-2-Kb	8	11	1	CSYRHFAP	YSYRHFAP	NetMHC	134.9	77.72	0.576	114	0.14	195.012	134.543	0.69	77.72	134.9	80.4	161.6	188.68614	228.4230889	247.5939338	382.5956254	M1_p20	-0.971428571	-0.385714286	TRUE	FALSE	TRUE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.13	114	0	0	NA	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.607085189	sgMsh2	cell line
chr6	123815817	123815817	T	C	ENSMUST00000075095.6	5	ENSMUSG00000072780	missense	M/T	701	Vmn2r24	ENSMUST00000075095.6:c.2102T>C	ENSMUSP00000074602.5:p.Met701Thr	H-2-Kb	8	6	6	QMWMVTRL	QMWMVMRL	NetMHC	249.67	165.69	0.664	1290	0.184	456.149	439.641	0.964	165.69	249.67	358.4	310.1	520.8827797	666.4076901	533.0156983	602.1989584	M1_p20	0.814285714	0.814285714	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.186	1290	0	0	NA	6qF2	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.868598809	sgMsh2	cell line
chr6	42286884	42286884	TG	T	ENSMUST00000031894.12	1	ENSMUSG00000029862	FS	G/X	40	Clcn1	ENSMUST00000031894.12:c.122del	ENSMUSP00000031894.6:p.Gly41AlafsTer70	H-2-Kb	8	28	0	TQHRYMAI	NA	NetMHC	259.42	NA	NA	87	0.138	338.138	NA	NA	NA	259.42	NA	273.8	NA	443.3431473	NA	402.476011	M1_p20	-0.614285714	-0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.144	87	0	0	NA	6qB2.1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.672463594	sgMsh2	cell line
chr6	116582023	116582023	AT	A	ENSMUST00000061723.5	NA	ENSMUSG00000050654	FS	I/X	308	Olfr215	ENSMUST00000061723.5:c.922del	ENSMUSP00000052425.4:p.Ile308TyrfsTer42	H-2-Kb	8	26	0	RNCVFSIL	NA	SMM	163.584	NA	NA	87	0.299	193.858	NA	NA	NA	268.72	NA	202.9	NA	163.5836898	NA	184.8161845	M1_p20	1.928571429	1.928571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.295	87	0	0	NA	6qE3	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	2	1	sgMsh2	cell line
chr6	72515320	72515320	A	G	ENSMUST00000162561.8	1	ENSMUSG00000052631	missense	V/A	181	Sh2d6	ENSMUST00000162561.8:c.542T>C	ENSMUSP00000124673.2:p.Val181Ala	H-2-Kb	8	5	7	QPFTLAAL	QPFTLAVL	SMM	136.691	321.914	2.355	108	0.083	392.013	1659.23	4.233	2868.95	584.16	4165.5	2841.1	321.9141004	136.691025	449.5106648	199.8664966	M1_p20	1.671428571	1.671428571	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.1	108	0	0	NA	6qC1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.466988607	sgMsh2	cell line
chr6	134520435	134520435	A	C	ENSMUST00000032322.14	1	ENSMUSG00000030201	missense	L/R	203	Lrp6	ENSMUST00000032322.14:c.608T>G	ENSMUSP00000032322.8:p.Leu203Arg	H-2-Kb	9	11	1	RNFIHKSNL	LNFIHKSNL	NetMHCpan	24.8	15.1	0.609	284	0.204	96.035	60.832	0.633	39.77	43.78	15.1	24.8	87.5205423	148.2893631	81.893607	152.4930322	M1_p20	-0.042857143	-0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	284	0	0	NA	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.933977214	sgMsh2	cell line
chr6	41394716	41394716	A	G	ENSMUST00000049079.8	1	ENSMUSG00000058119	missense	N/S	32	Gm5771	ENSMUST00000049079.8:c.95A>G	ENSMUSP00000039684.7:p.Asn32Ser	H-2-Kb	9	11	1	SSVPYQVSL	NSVPYQVSL	NetMHCpan	55	427.2	7.767	1027	0.116	192.657	1089.876	5.657	863.77	57.03	427.2	55	1486.312054	344.4371603	1315.982154	328.2842143	M1_p20	0.714285714	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.12	1027	0	0	NA	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.560386328	sgMsh2	cell line
chr6	66612495	66612495	GA	G	ENSMUST00000227418.1	NA	ENSMUSG00000059375	FS	F/X	25	Vmn1r33	ENSMUST00000227418.1:c.74del	ENSMUSP00000153840.1:p.Phe25SerfsTer5	H-2-Kb	9	5	7	NIFLLFSTL	NIFLLFFYT	NetMHCpan	45.1	6590.6	146.133	471	0.151	131.772	2704.993	20.528	4292.48	82.78	6590.6	45.1	997.9527977	180.7631913	1117.506351	217.3952246	M1_p20	2.214285714	2.314285714	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Vardict	2	0.142	471	0	0	NA	6qC1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.663123822	sgMsh2	cell line
chr6	134451069	134451069	T	C	ENSMUST00000032322.14	1	ENSMUSG00000030201	missense	Y/C	1520	Lrp6	ENSMUST00000032322.14:c.4559A>G	ENSMUSP00000032322.8:p.Tyr1520Cys	H-2-Kb	9	11	1	CSYRHFAPP	YSYRHFAPP	SMM	43.965	47.985	1.091	114	0.14	101.949	75.581	0.741	74.91	111.8	101.8	153.6	47.9854973	43.96529586	76.25178243	92.09795777	M1_p20	-1.085714286	-0.385714286	TRUE	FALSE	TRUE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.13	114	0	0	NA	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.607085189	sgMsh2	cell line
chr6	42400772	42400772	T	C	ENSMUST00000057398.3	NA	ENSMUSG00000046652	missense	Y/H	179	Tas2r143	ENSMUST00000057398.3:c.535T>C	ENSMUSP00000057910.3:p.Tyr179His	H-2-Kb	9	7	5	YYYLHHSVL	YYYLYHSVL	SMMPMBEC	83.416	66.413	0.796	354	0.119	96.73	66.576	0.688	66.74	117.85	51.9	109.3	67.46988967	84.16082809	66.41252616	83.41612282	M1_p20	0.471428571	0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.117	354	0	0	NA	6qB2.1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.54637667	sgMsh2	cell line
chr6	56986251	56986251	TA	T	ENSMUST00000226130.1	NA	ENSMUSG00000090346	FS	K/X	304	Vmn1r5	ENSMUST00000226130.1:c.915del	ENSMUSP00000153712.1:p.Lys305AsnfsTer13	H-2-Kb	9	8	5	MYFKNMFSL	NA	NetMHCpan	167.7	NA	NA	85	0.129	332.879	NA	NA	NA	241.03	NA	167.7	NA	424.7271271	NA	436.7671833	M1_p20	0.442857143	0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.144	85	0	0	NA	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.672463594	sgMsh2	cell line
chr6	56986251	56986251	TA	T	ENSMUST00000226130.1	NA	ENSMUSG00000090346	FS	K/X	304	Vmn1r5	ENSMUST00000226130.1:c.915del	ENSMUSP00000153712.1:p.Lys305AsnfsTer13	H-2-Kb	9	14	0	FSLFFIKPI	NA	NetMHCpan	97.5	NA	NA	85	0.129	307.993	NA	NA	NA	243.38	NA	97.5	NA	384.6892055	NA	372.6061339	M1_p20	1.842857143	1.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.144	85	0	0	NA	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.672463594	sgMsh2	cell line
chr6	108380923	108380923	A	T	ENSMUST00000032192.8	1	ENSMUSG00000030102	missense	K/M	521	Itpr1	ENSMUST00000032192.8:c.1562A>T	ENSMUSP00000032192.6:p.Lys521Met	H-2-Kb	9	9	3	IFMLLQAPF	IFKLLQAPF	NetMHC	243.96	1098.72	4.504	96	0.271	381.453	1088.97	2.855	1098.72	243.96	1897.8	649.4	1079.220037	368.2222268	940.2644145	394.6844353	M1_p20	1.285714286	2.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.258	96	0	0	NA	6qE1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	2	1	sgMsh2	cell line
chr6	122464160	122464160	A	G	ENSMUST00000068242.8	1	ENSMUSG00000040649	missense	V/A	75	Rimklb	ENSMUST00000068242.8:c.224T>C	ENSMUSP00000064467.6:p.Val75Ala	H-2-Kb	9	4	8	SAYPQVVAV	SAYPQVVVV	NetMHCpan	248.3	591.8	2.383	257	0.078	417.104	800.168	1.918	840.03	265.21	591.8	248.3	801.8811416	568.9970306	798.4541822	644.5401859	M1_p20	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.09	257	0	0	NA	6qF1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.420289746	sgMsh2	cell line
chr6	57258876	57258876	T	C	ENSMUST00000228297.1	NA	ENSMUSG00000115199	missense	V/A	243	Vmn1r15	ENSMUST00000228297.1:c.728T>C	ENSMUSP00000154252.1:p.Val243Ala	H-2-Kb	9	5	7	FVVMYWADF	FVVMYWVDF	NetMHC	306.14	761.72	2.488	554	0.173	379.005	706.007	1.863	761.72	306.14	3331.3	836.6	650.2943789	450.9309038	416.1500968	307.0789168	M1_p20	0.714285714	1.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.158	554	0	0	NA	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.737841999	sgMsh2	cell line
chr6	42286884	42286884	TG	T	ENSMUST00000031894.12	1	ENSMUSG00000029862	FS	G/X	40	Clcn1	ENSMUST00000031894.12:c.122del	ENSMUSP00000031894.6:p.Gly41AlafsTer70	H-2-Kb	9	60	0	TAWMRTTIL	NA	NetMHCpan	157.5	NA	NA	87	0.138	221.615	NA	NA	NA	328.86	NA	157.5	NA	251.2522734	NA	191.9773533	M1_p20	0.485714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.144	87	0	0	NA	6qB2.1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.672463594	sgMsh2	cell line
chr6	134484391	134484391	T	G	ENSMUST00000032322.14	1	ENSMUSG00000030201	missense	E/A	701	Lrp6	ENSMUST00000032322.14:c.2102A>C	ENSMUSP00000032322.8:p.Glu701Ala	H-2-Kb	9	4	8	SALEHVVAF	SALEHVVEF	NetMHC	346.5	552.55	1.595	267	0.386	444.167	549.223	1.237	552.55	346.5	572.2	399.4	545.8961105	515.3591605	539.8212792	488.9337312	M1_p20	1.442857143	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.388	267	0	0	NA	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	3	1	sgMsh2	cell line
chr6	123815817	123815817	T	C	ENSMUST00000075095.6	5	ENSMUSG00000072780	missense	M/T	701	Vmn2r24	ENSMUST00000075095.6:c.2102T>C	ENSMUSP00000074602.5:p.Met701Thr	H-2-Kb	9	8	4	WMVTRLSNV	WMVMRLSNV	SMMPMBEC	371.749	308.496	0.83	1290	0.184	393.346	326.071	0.829	273.51	374.49	1055.2	1159.9	343.6449768	412.2019102	308.4963287	371.7491635	M1_p20	0.385714286	0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.186	1290	0	0	NA	6qF2	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.868598809	sgMsh2	cell line
chr6	129583140	129583140	A	G	ENSMUST00000053708.8	1	ENSMUSG00000050241	missense	Y/C	125	Klre1	ENSMUST00000053708.8:c.374A>G	ENSMUSP00000055779.6:p.Tyr125Cys	H-2-Kb	9	4	8	VWFRCSCCF	VWFRCSCYF	SMM	187.116	103.302	0.552	181	0.37	339.266	180.202	0.531	161.68	383.92	666	1725.7	103.3023021	187.1156015	198.7238535	294.6117067	M1_p20	1.114285714	1.114285714	FALSE	FALSE	FALSE	3	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.376	181	0	0	NA	6qF3	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	2	1	sgMsh2	cell line
chr6	57258876	57258876	T	C	ENSMUST00000228297.1	NA	ENSMUSG00000115199	missense	V/A	243	Vmn1r15	ENSMUST00000228297.1:c.728T>C	ENSMUSP00000154252.1:p.Val243Ala	H-2-Kb	9	7	5	VMYWADFII	VMYWVDFII	SMM	154.565	218.328	1.413	554	0.173	312.379	430.03	1.377	602.28	395.01	1029	537.3	218.3282833	154.5645878	257.7804634	229.7470798	M1_p20	1.128571429	1.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.158	554	0	0	NA	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.737841999	sgMsh2	cell line
chr7	81101095	81101095	T	C	ENSMUST00000107348.1	1	ENSMUSG00000038763	missense	W/R	1538	Alpk3	ENSMUST00000107348.1:c.4612T>C	ENSMUSP00000102971.1:p.Trp1538Arg	H-2-Db	9	9	3	YQRTNGSFL	YQWTNGSFL	NetMHCpan	123.2	26.5	0.215	56	0.196	312.704	56.356	0.18	8.22	131.53	26.5	123.2	91.33137583	493.878363	86.21245256	572.2291797	M1_p20	-0.471428571	-0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.244	56	0	0	NA	7qD3	chr7-62476019-104249879	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr7	26611187	26611187	T	C	ENSMUST00000228367.1	NA	ENSMUSG00000091924	missense	M/V	298	Vmn1r185	ENSMUST00000228367.1:c.892A>G	ENSMUSP00000154816.1:p.Met298Val	H-2-Db	9	8	4	YSLVSRFNL	YSLMSRFNL	NetMHC	136.82	215.91	1.578	160	0.338	299.155	452.516	1.513	215.91	136.82	303	280.9	602.0325877	317.4095578	657.007005	372.8807814	M1_p20	0.828571429	0.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.325	160	0	0	NA	7qA3	chr7-23301111-42692961	3	2	1	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr7	25272796	25272796	A	G	ENSMUST00000169266.7	1	ENSMUSG00000005442	missense	I/V	651	Cic	ENSMUST00000169266.7:c.1951A>G	ENSMUSP00000132351.1:p.Ile651Val	H-2-Db	10	2	10	FSPINASPVV	FSPINASPVI	NetMHC	14.9	8.41	0.564	21	0.476	465.206	229.143	0.493	8.41	14.9	34.4	92.4	423.8869047	838.0115415	542.8376978	1013.141255	M1_p20	1.257142857	1.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.429	21	0	0	NA	7qA3	chr7-23301111-42692961	3	2	1	0.9	4.202897461	NA	2	1	sgMsh2	cell line
chr7	66784798	66784798	T	C	ENSMUST00000066475.10	1	ENSMUSG00000030510	missense	W/R	216	Cers3	ENSMUST00000066475.10:c.646T>C	ENSMUSP00000069238.8:p.Trp216Arg	H-2-Kb	8	8	4	SQYRYYIL	SQYWYYIL	NetMHC	4.27	6.01	1.407	525	0.267	11.074	15.356	1.387	6.01	4.27	10.4	7.4	20.3114066	14.74823333	31.82291802	20.73671696	M1_p20	-0.514285714	-0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.27	525	0	0	NA	7qC	chr7-62476019-104249879	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr7	19643130	19643130	A	C	ENSMUST00000055242.10	1	ENSMUSG00000002981	missense	F/V	170	Clptm1	ENSMUST00000055242.10:c.508T>G	ENSMUSP00000051293.9:p.Phe170Val	H-2-Kb	8	4	8	SIYIHVYV	SIYIHVYF	NetMHC	15.47	62.57	4.045	176	0.216	41.881	121.629	2.904	62.57	15.47	80.8	57.4	162.4575876	35.70590129	166.6249377	48.05515695	M1_p20	1.657142857	1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.228	176	0	0	NA	7qA3	chr7-12415921-23274031	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr7	4664738	4664738	A	G	ENSMUST00000079970.5	1	ENSMUSG00000063802	missense	L/P	252	Hspbp1	ENSMUST00000079970.5:c.755T>C	ENSMUSP00000078886.4:p.Leu252Pro	H-2-Kb	8	7	5	SAFLPQNL	SAFLLQNL	NetMHC	32.85	8.01	0.244	77	0.247	63.485	20.561	0.324	8.01	32.85	12.1	53.9	29.02284617	73.07015019	38.34775994	109.0787117	M1_p20	0.514285714	0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.26	77	0	0	NA	7qA1	chr7-3489139-7214089	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr7	28320255	28320255	A	G	ENSMUST00000209141.1	1	ENSMUSG00000003435	missense	F/L	497	Supt5	ENSMUST00000209141.1:c.1489T>C	ENSMUSP00000147164.1:p.Phe497Leu	H-2-Kb	8	11	1	LVILFSDL	FVILFSDL	NetMHCpan	33.8	63.7	1.885	159	0.346	68.106	75.272	1.105	40.58	34.18	63.7	33.8	93.70008827	130.2386842	86.84403626	102.0328459	M1_p20	2.114285714	2.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.326	159	0	0	NA	7qA3	chr7-23301111-42692961	3	2	1	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr7	6461136	6461136	T	C	ENSMUST00000214301.2	5	ENSMUSG00000048620	missense	V/A	209	Olfr1336	ENSMUST00000214301.2:c.626T>C	ENSMUSP00000150162.1:p.Val209Ala	H-2-Kb	8	10	2	IAILWGSL	IVILWGSL	NetMHCpan	26.7	38.1	1.427	627	0.271	48.129	52.985	1.101	49.64	35.34	38.1	26.7	82.36448742	81.04757034	56.33003227	60.91720937	M1_p20	1.685714286	1.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.263	627	0	0	NA	7qA1	chr7-3489139-7214089	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr6	141532679	141532679	A	G	ENSMUST00000032362.11	1	ENSMUSG00000030235	missense	K/R	56	Slco1c1	ENSMUST00000032362.11:c.167A>G	ENSMUSP00000032362.9:p.Lys56Arg	H-2-Kb	8	4	8	LSFVYFAR	LSFVYFAK	NetMHC	71.6	273.33	3.817	133	0.135	97.337	165.283	1.698	273.33	71.6	241.7	126.8	88.86689373	86.84403626	56.4598864	107.830098	M1_p20	0.714285714	1.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.129	133	0	0	NA	6qG2	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.602415303	sgMsh2	cell line
chr6	141532679	141532679	A	G	ENSMUST00000032362.11	1	ENSMUSG00000030235	missense	K/R	56	Slco1c1	ENSMUST00000032362.11:c.167A>G	ENSMUSP00000032362.9:p.Lys56Arg	H-2-Kb	8	5	7	SFVYFARA	SFVYFAKA	NetMHC	104.42	421.4	4.036	133	0.135	172.62	538.576	3.12	421.4	104.42	215.7	105.5	804.8964279	281.6696149	655.752568	239.7397234	M1_p20	1.085714286	1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.129	133	0	0	NA	6qG2	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.602415303	sgMsh2	cell line
chr6	141532679	141532679	A	G	ENSMUST00000032362.11	1	ENSMUSG00000030235	missense	K/R	56	Slco1c1	ENSMUST00000032362.11:c.167A>G	ENSMUSP00000032362.9:p.Lys56Arg	H-2-Kb	8	6	6	FVYFARAL	FVYFAKAL	NetMHCpan	53.9	100.9	1.872	133	0.135	100.957	211.274	2.093	281	106.91	100.9	53.9	196.218522	95.00358634	226.3288934	123.2366829	M1_p20	1.228571429	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.129	133	0	0	NA	6qG2	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.602415303	sgMsh2	cell line
chr7	45712581	45712581	C	A	ENSMUST00000107737.10	1	ENSMUSG00000057342	missense	R/L	144	Sphk2	ENSMUST00000107737.10:c.431G>T	ENSMUSP00000103366.2:p.Arg144Leu	H-2-Kb	8	4	8	ITPELLPL	ITPELLPR	NetMHC	118.41	17978.08	151.829	18	0.5	152.247	10235.102	67.227	17978.08	118.41	14279.5	146.1	3537.854762	158.3944645	6190.70344	195.7672319	M1_p20	0.571428571	0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.5	18	0	0	NA	7qB3	chr7-44255553-62464086	3	2	1	0.9	4.202897461	NA	2	1	sgMsh2	cell line
chr7	4469203	4469203	GA	G	ENSMUST00000163893.7	1	ENSMUSG00000006154	FS	R/X	22	Eps8l1	ENSMUST00000163893.7:c.69del	ENSMUSP00000125840.1:p.Lys23AsnfsTer56	H-2-Kb	8	6	7	SIYEQRNV	SIYEQRKR	SMM	80.305	2021.808	25.177	311	0.248	140.518	10629.403	75.645	16431.11	121.91	19443.2	292.4	2021.808416	80.30452175	4827.696948	159.1255801	M1_p20	-1.085714286	-1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.249	311	0	0	NA	7qA1	chr7-3489139-7214089	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr7	75579652	75579652	A	G	ENSMUST00000166315.6	5	ENSMUSG00000066406	missense	Q/R	111	Akap13	ENSMUST00000166315.6:c.332A>G	ENSMUSP00000129784.1:p.Gln111Arg	H-2-Kb	8	11	1	RALNFTRF	QALNFTRF	NetMHC	149.55	192.39	1.286	148	0.27	333.076	657.095	1.973	192.39	149.55	461.6	230.9	852.5895396	524.4933667	909.3686959	435.2512229	M1_p20	0.357142857	0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.271	148	0	0	NA	7qD1	chr7-62476019-104249879	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr7	66172255	66172255	A	G	ENSMUST00000036372.7	1	ENSMUSG00000032640	missense	H/R	746	Chsy1	ENSMUST00000036372.7:c.2237A>G	ENSMUSP00000047487.6:p.His746Arg	H-2-Kb	8	6	6	VVHIHRPV	VVHIHHPV	NetMHC	152.96	302.38	1.977	88	0.136	218.715	254.339	1.163	302.38	152.96	255.9	320.3	236.4503711	213.1768301	252.7784229	224.2538976	M1_p20	0.057142857	0.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.15	88	0	0	NA	7qC	chr7-62476019-104249879	4	2	2	0.9	4.202897461	NA	1	0.70048291	sgMsh2	cell line
chr7	64268700	64268700	G	C	ENSMUST00000085222.11	1	ENSMUSG00000030523	missense	W/S	1480	Trpm1	ENSMUST00000085222.11:c.4439G>C	ENSMUSP00000082318.5:p.Trp1480Ser	H-2-Kb	8	11	1	SSAEYSSI	WSAEYSSI	NetMHCpan	124.4	800.3	6.433	329	0.234	215.247	757.184	3.518	1539.96	187.42	800.3	124.4	691.416915	243.0748352	714.0687051	313.1410475	M1_p20	-0.128571429	-0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	329	0	0	NA	7qC	chr7-62476019-104249879	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr7	26611187	26611187	T	C	ENSMUST00000228367.1	NA	ENSMUSG00000091924	missense	M/V	298	Vmn1r185	ENSMUST00000228367.1:c.892A>G	ENSMUSP00000154816.1:p.Met298Val	H-2-Kb	8	4	8	FMRSYSLV	FMRSYSLM	NetMHC	238.94	166.52	0.697	160	0.338	450.026	344.108	0.765	166.52	238.94	202.1	466.8	486.1160944	433.2514252	558.1359543	516.1072977	M1_p20	0.357142857	0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.325	160	0	0	NA	7qA3	chr7-23301111-42692961	3	2	1	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr7	13028552	13028552	C	A	ENSMUST00000005705.7	1	ENSMUSG00000005566	missense	L/M	368	Trim28	ENSMUST00000005705.7:c.1102C>A	ENSMUSP00000005705.7:p.Leu368Met	H-2-Kb	8	9	3	KKMIYFQL	KKLIYFQL	SMMPMBEC	242.516	183.967	0.759	95	0.168	424.719	506.319	1.192	828.67	832.15	1033.4	533.4	183.9670312	316.0385059	183.9670312	242.5157786	M1_p20	0.614285714	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.19	95	0	0	NA	7qA1	chr7-12415921-23274031	4	2	2	0.9	4.202897461	NA	1	0.887278353	sgMsh2	cell line
chr6	141532679	141532679	A	G	ENSMUST00000032362.11	1	ENSMUSG00000030235	missense	K/R	56	Slco1c1	ENSMUST00000032362.11:c.167A>G	ENSMUSP00000032362.9:p.Lys56Arg	H-2-Kb	9	4	8	LSFVYFARA	LSFVYFAKA	NetMHC	8.07	18.23	2.259	133	0.135	41.355	63.038	1.524	18.23	8.07	19.6	12.2	162.2220929	88.94263671	106.4755765	70.50988397	M1_p20	1.085714286	1.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.129	133	0	0	NA	6qG2	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.602415303	sgMsh2	cell line
chr7	26611187	26611187	T	C	ENSMUST00000228367.1	NA	ENSMUSG00000091924	missense	M/V	298	Vmn1r185	ENSMUST00000228367.1:c.892A>G	ENSMUSP00000154816.1:p.Met298Val	H-2-Kb	9	11	1	VSRFNLAHL	MSRFNLAHL	NetMHC	34.25	88.62	2.587	160	0.338	91.603	217.283	2.372	88.62	34.25	130.4	64.6	304.1655332	118.6069123	327.5291816	126.5464598	M1_p20	0.142857143	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.325	160	0	0	NA	7qA3	chr7-23301111-42692961	3	2	1	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr7	25630422	25630422	G	T	ENSMUST00000205808.1	5	ENSMUSG00000060376	missense	P/H	92	Bckdha	ENSMUST00000205808.1:c.275C>A	ENSMUSP00000146018.1:p.Pro92His	H-2-Kb	9	10	5	RSWKHLSRL	RSWKPLSRL	NetMHCpan	40.3	284.5	7.06	18	0.444	90.509	379.431	4.192	202.73	43.85	284.5	40.3	474.3621186	146.9298381	571.8077009	137.1671136	M1_p20	-0.814285714	-0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.467	18	0	0	NA	7qA3	chr7-23301111-42692961	3	2	1	0.9	4.202897461	NA	2	1	sgMsh2	cell line
chr7	75579652	75579652	A	G	ENSMUST00000166315.6	5	ENSMUSG00000066406	missense	Q/R	111	Akap13	ENSMUST00000166315.6:c.332A>G	ENSMUSP00000129784.1:p.Gln111Arg	H-2-Kb	9	11	1	RALNFTRFL	QALNFTRFL	NetMHC	68.36	76.32	1.116	148	0.27	486.821	341.816	0.702	76.32	68.36	192.6	126.2	491.0322312	847.4420308	748.6003055	1016.833861	M1_p20	0.642857143	0.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.271	148	0	0	NA	7qD1	chr7-62476019-104249879	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr7	6461136	6461136	T	C	ENSMUST00000214301.2	5	ENSMUSG00000048620	missense	V/A	209	Olfr1336	ENSMUST00000214301.2:c.626T>C	ENSMUSP00000150162.1:p.Val209Ala	H-2-Kb	9	10	2	IAILWGSLL	IVILWGSLL	NetMHC	79.58	110.35	1.387	627	0.271	134.3	179.951	1.34	110.35	79.58	151.4	83.2	208.5018919	185.4001153	225.0349638	194.6480243	M1_p20	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.263	627	0	0	NA	7qA1	chr7-3489139-7214089	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr7	26611187	26611187	T	C	ENSMUST00000228367.1	NA	ENSMUSG00000091924	missense	M/V	298	Vmn1r185	ENSMUST00000228367.1:c.892A>G	ENSMUSP00000154816.1:p.Met298Val	H-2-Kb	9	3	9	VFMRSYSLV	VFMRSYSLM	NetMHC	86.79	66.95	0.771	160	0.338	195.423	101.978	0.522	66.95	86.79	103.7	265	100.2559138	171.4391481	132.8158787	219.4067579	M1_p20	0.357142857	0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.325	160	0	0	NA	7qA3	chr7-23301111-42692961	3	2	1	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr6	141532679	141532679	A	G	ENSMUST00000032362.11	1	ENSMUSG00000030235	missense	K/R	56	Slco1c1	ENSMUST00000032362.11:c.167A>G	ENSMUSP00000032362.9:p.Lys56Arg	H-2-Kb	9	5	7	SFVYFARAL	SFVYFAKAL	NetMHC	90.76	210.98	2.325	133	0.135	303.576	377.92	1.245	210.98	90.76	211.2	119.5	544.6405843	487.6519891	802.1396792	782.0778752	M1_p20	1.228571429	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.129	133	0	0	NA	6qG2	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.602415303	sgMsh2	cell line
chr7	4664738	4664738	A	G	ENSMUST00000079970.5	1	ENSMUSG00000063802	missense	L/P	252	Hspbp1	ENSMUST00000079970.5:c.755T>C	ENSMUSP00000078886.4:p.Leu252Pro	H-2-Kb	9	7	5	SAFLPQNLL	SAFLLQNLL	NetMHC	141.98	64.62	0.455	77	0.247	187.422	95.704	0.511	64.62	141.98	78.4	222.4	113.0082111	152.4438821	169.531342	289.9011913	M1_p20	0.8	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.26	77	0	0	NA	7qA1	chr7-3489139-7214089	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr7	26611187	26611187	T	C	ENSMUST00000228367.1	NA	ENSMUSG00000091924	missense	M/V	298	Vmn1r185	ENSMUST00000228367.1:c.892A>G	ENSMUSP00000154816.1:p.Met298Val	H-2-Kb	9	6	6	RSYSLVSRF	RSYSLMSRF	NetMHCpan	141.6	108.4	0.766	160	0.338	189.696	134.173	0.707	111.27	145.45	108.4	141.6	157.0760603	233.9429705	198.2668013	302.8656361	M1_p20	0.485714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.325	160	0	0	NA	7qA3	chr7-23301111-42692961	3	2	1	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr7	66784798	66784798	T	C	ENSMUST00000066475.10	1	ENSMUSG00000030510	missense	W/R	216	Cers3	ENSMUST00000066475.10:c.646T>C	ENSMUSP00000069238.8:p.Trp216Arg	H-2-Kb	9	8	4	SQYRYYILE	SQYWYYILE	SMM	92.493	70.325	0.76	525	0.267	160.502	195.895	1.221	314.3	217.43	396.3	364.7	70.32504197	92.49324152	77.49077422	103.5738214	M1_p20	-0.514285714	-0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.27	525	0	0	NA	7qC	chr7-62476019-104249879	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr7	44860083	44860083	A	T	ENSMUST00000003044.13	1	ENSMUSG00000002963	missense	I/F	214	Pnkp	ENSMUST00000003044.13:c.640A>T	ENSMUSP00000003044.7:p.Ile214Phe	H-2-Kb	9	10	2	VFFTNQMGI	VIFTNQMGI	NetMHC	224.67	173.98	0.774	136	0.39	495.62	287.013	0.579	173.98	224.67	171	466.3	400.0460623	524.9404026	441.8247089	598.7561676	M1_p20	0.157142857	0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.361	136	0	0	NA	7qB3	chr7-44255553-62464086	3	2	1	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr7	35487692	35487692	GT	G	ENSMUST00000193633.5	5	ENSMUSG00000030491	FS	N/X	591	Tdrd12	ENSMUST00000193633.5:c.1772del	ENSMUSP00000141796.2:p.Asn591ThrfsTer15	H-2-Kb	9	16	0	SGSLHHTRL	NA	NetMHC	243.23	NA	NA	26	0.5	463.888	NA	NA	NA	243.23	NA	341.3	NA	719.6312263	NA	586.4756699	M1_p20	-0.685714286	-0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.425	26	0	0	NA	7qB2	chr7-23301111-42692961	3	2	1	0.9	4.202897461	NA	2	1	sgMsh2	cell line
chr7	80759891	80759891	A	G	ENSMUST00000167377.2	1	ENSMUSG00000030536	missense	V/A	232	Iqgap1	ENSMUST00000167377.2:c.695T>C	ENSMUSP00000128278.1:p.Val232Ala	H-2-Kb	9	11	1	AAADTFTAL	VAADTFTAL	NetMHC	329.73	83.82	0.254	103	0.379	443.609	141.997	0.32	83.82	329.73	105.3	356.2	178.6940122	531.018926	254.2435828	701.8592048	M1_p20	0.757142857	0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.378	103	0	0	NA	7qD3	chr7-62476019-104249879	4	2	2	0.9	4.202897461	NA	2	1	sgMsh2	cell line
chr7	64268700	64268700	G	C	ENSMUST00000085222.11	1	ENSMUSG00000030523	missense	W/S	1480	Trpm1	ENSMUST00000085222.11:c.4439G>C	ENSMUSP00000082318.5:p.Trp1480Ser	H-2-Kb	9	11	1	SSAEYSSIM	WSAEYSSIM	SMM	248.949	549.68	2.208	329	0.234	400.532	1022.328	2.552	1271.53	371.28	1544.2	441.3	549.6800816	248.9487787	773.1255038	429.783759	M1_p20	0.257142857	0.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	329	0	0	NA	7qC	chr7-62476019-104249879	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr7	10100105	10100105	A	C	ENSMUST00000094863.5	5	ENSMUSG00000058685	missense	N/K	335	Vmn2r51	ENSMUST00000094863.5:c.1005T>G	ENSMUSP00000092459.4:p.Asn335Lys	H-2-Kb	9	7	5	SGFKKFVQT	SGFKNFVQT	NetMHCpan	246.4	610.6	2.478	570	0.118	341.905	660.005	1.93	709.41	399.2	610.6	246.4	991.0829389	500.1612019	593.2667381	284.6098982	M1_p20	-0.314285714	0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.105	570	0	0	NA	7qA1	chr7-9991672-12363075	6	3	3	0.9	4.202897461	NA	1	0.490338037	sgMsh2	cell line
chr7	45897436	45897436	C	T	ENSMUST00000069772.15	1	ENSMUSG00000002781	missense	L/F	9	Tmem143	ENSMUST00000069772.15:c.25C>T	ENSMUSP00000070405.7:p.Leu9Phe	H-2-Kb	9	1	9	MTVARWLRF	MTVARWLRL	SMMPMBEC	346.937	200.563	0.578	88	0.307	447.198	172.436	0.386	144.31	476.98	90.6	447.6	264.9171047	446.7967444	200.5626226	346.9365057	M1_p20	0.385714286	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.327	88	0	0	NA	7qB3	chr7-44255553-62464086	3	2	1	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr7	10714379	10714379	C	A	ENSMUST00000117413.8	1	ENSMUSG00000034087	missense	L/M	170	Nlrp4b	ENSMUST00000117413.8:c.508C>A	ENSMUSP00000113095.1:p.Leu170Met	H-2-Kb	9	3	9	LMIVWSEGM	LMIVWSEGL	SMM	279.969	212.868	0.76	222	0.311	469.782	287.122	0.611	269.98	527.23	374.6	681.3	212.8678139	279.9690348	304.2636004	412.3348098	M1_p20	0.714285714	1.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.295	222	0	0	NA	7qA1	chr7-9991672-12363075	6	3	3	0.9	4.202897461	NA	2	1	sgMsh2	cell line
chr7	81348426	81348426	T	A	ENSMUST00000178892.2	1	ENSMUSG00000025586	missense	Y/F	535	Cpeb1	ENSMUST00000178892.2:c.1604A>T	ENSMUSP00000137079.1:p.Tyr535Phe	H-2-Kb	9	7	5	VCFKFFCRS	VCFKYFCRS	SMM	96.407	118.607	1.23	61	0.328	202.811	222.153	1.095	822.05	618.66	325.7	298.9	118.6069123	96.40731774	113.5664369	106.721028	M1_p20	0.242857143	1.957142857	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.324	61	0	0	NA	7qD3	chr7-62476019-104249879	4	2	2	0.9	4.202897461	NA	2	1	sgMsh2	cell line
chr7	7334434	7334434	GT	G	ENSMUST00000072475.8	5	ENSMUSG00000070847	FS	T/X	68	Vmn2r30	ENSMUST00000072475.8:c.202del	ENSMUSP00000072296.6:p.Thr68GlnfsTer30	H-2-Kb	9	15	0	TNMLWHWCL	NA	NetMHCpan	282.3	NA	NA	1379	0.062	358.473	NA	NA	NA	1614.45	NA	282.3	NA	425.7062242	NA	291.2393144	M1_p20	1	1	FALSE	FALSE	FALSE	1	FALSE	0	Strelka2;Vardict	2	0.0616	1379	0	0	NA	7qA1	chr7-7312117-8258069	9.99457613	7.99457613	2	0.9	4.202897461	NA	1	0.287664982	sgMsh2	cell line
chr7	102714398	102714398	T	A	ENSMUST00000216312.1	5	ENSMUSG00000066273	missense	K/M	5	Olfr33	ENSMUST00000216312.1:c.14A>T	ENSMUSP00000149588.1:p.Lys5Met	H-2-Db	9	5	1	MAFVNITFF	KAFVNITFF	NetMHCpan	20.3	20.5	1.01	353	0.238	27.224	31.169	1.145	17.48	20.52	20.5	20.3	43.01500721	40.79622703	41.8379118	33.92891721	M1_p20	1.842857143	1.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.242	353	0	0	NA	7qE3	chr7-62476019-104249879	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr8	13576361	13576361	T	C	ENSMUST00000117551.3	1	ENSMUSG00000031453	missense	M/V	741	Rasa3	ENSMUST00000117551.3:c.2221A>G	ENSMUSP00000112998.2:p.Met741Val	H-2-Db	9	4	8	YSLFNLYVG	YSLFNLYMG	NetMHC	87.93	363.82	4.138	182	0.225	182.548	418.279	2.291	363.82	87.93	556	201.2	472.737441	298.2771604	313.0184957	163.896621	M1_p20	1.342857143	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.234	182	0	0	NA	8qA1.1	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr7	122627780	122627780	A	G	ENSMUST00000064989.11	1	ENSMUSG00000052889	missense	N/S	663	Prkcb	ENSMUST00000064989.11:c.1988A>G	ENSMUSP00000070019.5:p.Asn663Ser	H-2-Db	9	7	5	FSFVSSEFL	FSFVNSEFL	NetMHCpan	67.3	3.9	0.058	106	0.274	229.695	12.388	0.054	6.26	102.47	3.9	67.3	21.95937625	445.2664776	18.51697329	356.9192732	M1_p20	1.214285714	1.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.281	106	0	0	NA	7qF2	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr8	16002576	16002576	C	T	ENSMUST00000082104.6	1	ENSMUSG00000060924	missense	G/R	2183	Csmd1	ENSMUST00000082104.6:c.6547G>A	ENSMUSP00000080751.6:p.Gly2183Arg	H-2-Db	9	11	1	RVYINFTLL	GVYINFTLL	NetMHCpan	111.3	419.4	3.768	281	0.256	142.28	350.172	2.461	535.81	250.04	419.4	111.3	280.9441543	144.417559	246.9278073	140.142545	M1_p20	1.342857143	1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.244	281	0	0	NA	8qA1.2	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr7	99667112	99667112	T	C	ENSMUST00000107088.7	1	ENSMUSG00000030737	missense	T/A	404	Slco2b1	ENSMUST00000107088.7:c.1210A>G	ENSMUSP00000102703.1:p.Thr404Ala	H-2-Kb	8	10	2	IAASFANM	ITASFANM	NetMHC	5.86	5.92	1.01	88	0.33	17.404	13.8	0.793	5.92	5.86	10.9	9	16.70090478	25.80714726	19.75786438	31.24208431	M1_p20	0.828571429	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.333	88	0	0	NA	7qE1	chr7-62476019-104249879	4	2	2	0.9	4.202897461	NA	2	1	sgMsh2	cell line
chr7	102714398	102714398	T	A	ENSMUST00000216312.1	5	ENSMUSG00000066273	missense	K/M	5	Olfr33	ENSMUST00000216312.1:c.14A>T	ENSMUSP00000149588.1:p.Lys5Met	H-2-Kb	8	3	3	SSMAFVNI	SSKAFVNI	NetMHC	7.44	94.75	12.735	353	0.238	21.935	114.628	5.226	94.75	7.44	72.6	8	144.7904774	43.82682402	134.5054866	35.87071224	M1_p20	1.557142857	1.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.242	353	0	0	NA	7qE3	chr7-62476019-104249879	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr7	108066532	108066532	T	C	ENSMUST00000071658.2	NA	ENSMUSG00000063120	missense	M/V	89	Olfr480	ENSMUST00000071658.2:c.265A>G	ENSMUSP00000071583.2:p.Met89Val	H-2-Kb	8	11	1	VYLFLSHL	MYLFLSHL	NetMHCpan	13.1	28.9	2.206	330	0.312	134.327	287.934	2.144	52.58	23.33	28.9	13.1	523.2870654	245.323979	556.8522772	262.8693795	M1_p20	1.271428571	1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.309	330	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr7	108031681	108031681	A	G	ENSMUST00000210173.2	3	ENSMUSG00000094426	missense	Y/H	221	Olfr478	ENSMUST00000210173.2:c.661T>C	ENSMUSP00000147713.1:p.Tyr221His	H-2-Kb	8	9	3	ISHIYILI	ISYIYILI	NetMHCpan	32.1	7	0.218	937	0.256	78.835	8.59	0.109	4.24	53.98	7	32.1	10.56185011	124.3769779	10.17981768	103.6907462	M1_p20	1.714285714	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.266	937	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr8	16002576	16002576	C	T	ENSMUST00000082104.6	1	ENSMUSG00000060924	missense	G/R	2183	Csmd1	ENSMUST00000082104.6:c.6547G>A	ENSMUSP00000080751.6:p.Gly2183Arg	H-2-Kb	8	11	1	RVYINFTL	GVYINFTL	NetMHCpan	56.9	280.9	4.937	281	0.256	146.006	500.389	3.427	397.19	57.73	280.9	56.9	947.8508415	251.0383085	603.5871704	234.2825811	M1_p20	1.4	1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.244	281	0	0	NA	8qA1.2	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr7	102927910	102927910	T	A	ENSMUST00000215782.2	5	ENSMUSG00000073963	missense	I/N	94	Olfr572	ENSMUST00000215782.2:c.281T>A	ENSMUSP00000149174.1:p.Ile94Asn	H-2-Kb	8	6	6	FNYKFNTF	FNYKFITF	NetMHCpan	50.8	48.2	0.949	284	0.236	130.321	119.91	0.92	86.45	77.52	48.2	50.8	158.0301673	183.1217795	153.3698525	187.8192059	M1_p20	-1.042857143	-1.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.241	284	0	0	NA	7qE3	chr7-62476019-104249879	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr7	127905762	127905762	T	C	ENSMUST00000071056.13	1	ENSMUSG00000030802	missense	I/T	130	Bckdk	ENSMUST00000071056.13:c.389T>C	ENSMUSP00000070345.7:p.Ile130Thr	H-2-Kb	8	10	2	YTRAFQKL	YIRAFQKL	NetMHCpan	121.7	137.9	1.133	209	0.153	139.122	142.352	1.023	95.73	131.44	137.9	121.7	146.8047136	146.8047136	188.2521739	180.6092545	M1_p20	-0.6	-0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.162	209	0	0	NA	7qF3	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	1	0.756521543	sgMsh2	cell line
chr7	105555462	105555462	AC	A	ENSMUST00000046983.9	1	ENSMUSG00000037049	FS	P/X	183	Smpd1	ENSMUST00000046983.9:c.551del	ENSMUSP00000042187.8:p.Pro184GlnfsTer72	H-2-Kb	8	47	0	VQIHFAAA	NA	SMMPMBEC	150.918	NA	NA	126	0.31	175.233	NA	NA	NA	165.65	NA	488.7	NA	184.8161845	NA	150.9176382	M1_p20	0.857142857	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.294	126	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr7	108171874	108171874	G	A	ENSMUST00000072035.3	NA	ENSMUSG00000096068	missense	P/L	290	Olfr486	ENSMUST00000072035.3:c.869C>T	ENSMUSP00000071918.3:p.Pro290Leu	H-2-Kb	8	5	7	VIPVLNLL	VIPVLNPL	NetMHC	173.73	43.03	0.248	346	0.199	354.134	130.801	0.369	43.03	173.73	146.4	422.9	115.8083836	306.71852	145.794117	401.5503419	M1_p20	2.142857143	2.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.211	346	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	1	0.98534596	sgMsh2	cell line
chr7	145268112	145268112	G	T	ENSMUST00000058022.5	1	ENSMUSG00000048677	missense	L/M	290	Tpcn2	ENSMUST00000058022.5:c.868C>A	ENSMUSP00000061308.4:p.Leu290Met	H-2-Kb	8	5	7	SLFLMNML	SLFLMNLL	NetMHCpan	128.3	115.8	0.903	86	0.233	184.84	213.272	1.154	203.32	181.86	115.8	128.3	225.8083514	187.8192059	223.2235446	189.1211064	M1_p20	2.071428571	2.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.245	86	0	0	NA	7qF5	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr7	108031681	108031681	A	G	ENSMUST00000210173.2	3	ENSMUSG00000094426	missense	Y/H	221	Olfr478	ENSMUST00000210173.2:c.661T>C	ENSMUSP00000147713.1:p.Tyr221His	H-2-Kb	8	7	5	IAISHIYI	IAISYIYI	NetMHCpan	132.8	22.8	0.172	937	0.256	294.664	57.982	0.197	28.92	212.85	22.8	132.8	99.25216755	384.3616066	87.04423244	376.4783444	M1_p20	1.428571429	1.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.266	937	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr7	108422769	108422769	T	C	ENSMUST00000213521.2	3	ENSMUSG00000095239	missense	L/P	66	Olfr497	ENSMUST00000213521.2:c.197T>C	ENSMUSP00000150439.1:p.Leu66Pro	H-2-Kb	8	7	5	MYFFPSHL	MYFFLSHL	NetMHCpan	37.4	18.4	0.492	785	0.189	278.261	102.23	0.367	79.22	241.21	18.4	37.4	125.2391179	315.3116375	128.7478543	366.2182643	M1_p20	0.357142857	0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.197	785	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	1	0.919967555	sgMsh2	cell line
chr7	91940074	91940074	T	A	ENSMUST00000107196.9	1	ENSMUSG00000052572	missense	I/N	227	Dlg2	ENSMUST00000107196.9:c.680T>A	ENSMUSP00000102814.2:p.Ile227Asn	H-2-Kb	8	5	7	SIYVTKNI	SIYVTKII	NetMHC	242.01	2437.57	10.072	258	0.275	286.831	2390.198	8.333	2437.57	242.01	1637.8	259.8	2481.646968	364.5356443	2342.825811	313.8629122	M1_p20	0.542857143	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.285	258	0	0	NA	7qE1	chr7-62476019-104249879	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr7	105555462	105555462	AC	A	ENSMUST00000046983.9	1	ENSMUSG00000037049	FS	P/X	183	Smpd1	ENSMUST00000046983.9:c.551del	ENSMUSP00000042187.8:p.Pro184GlnfsTer72	H-2-Kb	8	38	0	STWRAQTL	NA	NetMHCpan	140.5	NA	NA	126	0.31	249.349	NA	NA	NA	259.51	NA	140.5	NA	239.1883374	NA	262.2647967	M1_p20	-0.671428571	-0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.294	126	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr7	143781688	143781688	A	T	ENSMUST00000054048.9	1	ENSMUSG00000048965	missense	L/H	26	Mrgpre	ENSMUST00000054048.9:c.77T>A	ENSMUSP00000058000.8:p.Leu26His	H-2-Kb	8	7	5	TILSHTEL	TILSLTEL	SMM	254.531	564.599	2.218	53	0.321	270.59	569.599	2.105	574.6	263.48	405.1	277.7	564.598864	254.5305993	580.4168341	288.8949831	M1_p20	0.557142857	0.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.308	53	0	0	NA	7qF5	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr7	108714066	108714066	C	A	ENSMUST00000074730.3	NA	ENSMUSG00000056946	missense	L/M	238	Olfr512	ENSMUST00000074730.3:c.712C>A	ENSMUSP00000074291.4:p.Leu238Met	H-2-Kb	8	6	6	ILFTIMRM	ILFTILRM	NetMHCpan	74.1	112.6	1.52	544	0.222	290.124	605.685	2.088	729.71	264.21	112.6	74.1	758.1235717	462.1042896	481.6593553	316.0385059	M1_p20	1.385714286	1.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.217	544	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr7	100503182	100503182	A	G	ENSMUST00000207405.1	1	ENSMUSG00000030708	missense	M/T	309	Dnajb13	ENSMUST00000207405.1:c.926T>C	ENSMUSP00000147019.1:p.Met309Thr	H-2-Kb	8	13	2	QTLRQALL	QMLRQALL	SMM	286.906	520.883	1.816	59	0.203	461.754	706.441	1.53	350.19	416.82	892	1408.6	520.8827797	286.906244	911.4650073	506.6872779	M1_p20	0.642857143	0.642857143	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	59	0	0	NA	7qE2	chr7-62476019-104249879	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr7	108066532	108066532	T	C	ENSMUST00000071658.2	NA	ENSMUSG00000063120	missense	M/V	89	Olfr480	ENSMUST00000071658.2:c.265A>G	ENSMUSP00000071583.2:p.Met89Val	H-2-Kb	8	8	4	HTPVYLFL	HTPMYLFL	NetMHCpan	245.7	219.6	0.894	330	0.312	262.002	292.515	1.116	407.26	463.94	219.6	245.7	316.0385059	266.5262568	268.9923939	257.4779247	M1_p20	1.571428571	1.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.309	330	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr7	86811337	86811337	G	A	ENSMUST00000164996.1	5	ENSMUSG00000090949	missense	V/I	624	Vmn2r77	ENSMUST00000164996.1:c.1870G>A	ENSMUSP00000129540.1:p.Val624Ile	H-2-Kb	8	6	6	ETLSYILL	ETLSYVLL	SMMPMBEC	299.737	258.071	0.861	634	0.235	438.719	380.319	0.867	864.89	988.22	444.6	532.5	316.0385059	344.9371732	258.0714726	299.7367541	M1_p20	1.871428571	1.871428571	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.241	634	0	0	NA	7qD3	chr7-62476019-104249879	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr8	16002576	16002576	C	T	ENSMUST00000082104.6	1	ENSMUSG00000060924	missense	G/R	2183	Csmd1	ENSMUST00000082104.6:c.6547G>A	ENSMUSP00000080751.6:p.Gly2183Arg	H-2-Kb	9	11	1	RVYINFTLL	GVYINFTLL	NetMHC	15.28	49.94	3.268	281	0.256	53.025	93.006	1.754	49.94	15.28	91.8	21.5	94.21281926	84.54929682	99.36878965	95.55424822	M1_p20	1.342857143	1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.244	281	0	0	NA	8qA1.2	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr7	86811337	86811337	G	A	ENSMUST00000164996.1	5	ENSMUSG00000090949	missense	V/I	624	Vmn2r77	ENSMUST00000164996.1:c.1870G>A	ENSMUSP00000129540.1:p.Val624Ile	H-2-Kb	9	8	4	LSYILLTSL	LSYVLLTSL	NetMHCpan	26.5	23.3	0.879	634	0.235	55.636	50.423	0.906	24.09	28.24	23.3	26.5	76.75558746	92.92017092	84.382036	83.03286055	M1_p20	1.871428571	1.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.241	634	0	0	NA	7qD3	chr7-62476019-104249879	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr7	108066532	108066532	T	C	ENSMUST00000071658.2	NA	ENSMUSG00000063120	missense	M/V	89	Olfr480	ENSMUST00000071658.2:c.265A>G	ENSMUSP00000071583.2:p.Met89Val	H-2-Kb	9	10	2	PVYLFLSHL	PMYLFLSHL	SMM	27.74	12.797	0.461	330	0.312	31.825	25.891	0.814	28.38	30.85	39.4	32.8	12.79705392	27.74022632	23.40183969	47.56089297	M1_p20	1.271428571	1.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.309	330	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr7	99667112	99667112	T	C	ENSMUST00000107088.7	1	ENSMUSG00000030737	missense	T/A	404	Slco2b1	ENSMUST00000107088.7:c.1210A>G	ENSMUSP00000102703.1:p.Thr404Ala	H-2-Kb	9	10	2	IAASFANML	ITASFANML	NetMHC	49.5	59.95	1.211	88	0.33	106.089	142.925	1.347	59.95	49.5	72	56.9	213.850367	155.2780255	358.3026333	277.4917016	M1_p20	1.114285714	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.333	88	0	0	NA	7qE1	chr7-62476019-104249879	4	2	2	0.9	4.202897461	NA	2	1	sgMsh2	cell line
chr7	99667112	99667112	T	C	ENSMUST00000107088.7	1	ENSMUSG00000030737	missense	T/A	404	Slco2b1	ENSMUST00000107088.7:c.1210A>G	ENSMUSP00000102703.1:p.Thr404Ala	H-2-Kb	9	9	3	SIAASFANM	SITASFANM	NetMHC	52.64	67.03	1.273	88	0.33	261.476	391.398	1.497	67.03	52.64	142.9	83.3	639.8968908	439.6529586	738.3291242	556.2243536	M1_p20	0.828571429	1.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.333	88	0	0	NA	7qE1	chr7-62476019-104249879	4	2	2	0.9	4.202897461	NA	2	1	sgMsh2	cell line
chr7	145268112	145268112	G	T	ENSMUST00000058022.5	1	ENSMUSG00000048677	missense	L/M	290	Tpcn2	ENSMUST00000058022.5:c.868C>A	ENSMUSP00000061308.4:p.Leu290Met	H-2-Kb	9	3	9	IGSLFLMNM	IGSLFLMNL	NetMHCpan	41.9	22	0.525	86	0.233	295.444	211.026	0.714	24.76	68.36	22	41.9	397.2921646	522.5285205	422.9119919	573.1258538	M1_p20	1.414285714	2.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.245	86	0	0	NA	7qF5	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr7	86230157	86230157	G	T	ENSMUST00000165771.1	5	ENSMUSG00000091239	missense	L/I	312	Vmn2r76	ENSMUST00000165771.1:c.934C>A	ENSMUSP00000127309.1:p.Leu312Ile	H-2-Kb	9	11	1	IFNSFHGTL	LFNSFHGTL	NetMHC	90.6	323.06	3.566	179	0.235	213.074	517.132	2.427	323.06	90.6	536.4	171.4	497.86317	254.7475407	565.2622723	289.2344371	M1_p20	-0.285714286	0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	179	0	0	NA	7qD3	chr7-62476019-104249879	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr7	102154007	102154007	G	T	ENSMUST00000210682.1	5	ENSMUSG00000063550	missense	P/H	662	Nup98	ENSMUST00000210682.1:c.1985C>A	ENSMUSP00000148115.1:p.Pro662His	H-2-Kb	9	4	8	VSRFYTNHI	VSRFYTNPI	NetMHCpan	89.5	68.1	0.761	307	0.215	127.078	97.48	0.767	73.59	91.56	68.1	89.5	121.3696222	162.5960534	131.9015807	176.7054726	M1_p20	-0.842857143	-0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.213	307	0	0	NA	7qE2	chr7-62476019-104249879	4	2	2	0.9	4.202897461	NA	1	0.994685732	sgMsh2	cell line
chr7	108422769	108422769	T	C	ENSMUST00000213521.2	3	ENSMUSG00000095239	missense	L/P	66	Olfr497	ENSMUST00000213521.2:c.197T>C	ENSMUSP00000150439.1:p.Leu66Pro	H-2-Kb	9	6	6	PMYFFPSHL	PMYFFLSHL	SMM	32.368	13.744	0.425	785	0.189	59.76	27.523	0.461	44.85	106.52	32.8	66.4	13.74390042	32.36756285	22.24590099	53.11901339	M1_p20	0.357142857	0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.197	785	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	1	0.919967555	sgMsh2	cell line
chr7	108031681	108031681	A	G	ENSMUST00000210173.2	3	ENSMUSG00000094426	missense	Y/H	221	Olfr478	ENSMUST00000210173.2:c.661T>C	ENSMUSP00000147713.1:p.Tyr221His	H-2-Kb	9	7	5	IAISHIYIL	IAISYIYIL	NetMHCpan	89.6	39.6	0.442	937	0.256	172.099	112.772	0.655	92.77	178.58	39.6	89.6	132.7730709	165.6189397	178.3405083	224.0010221	M1_p20	1.714285714	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.266	937	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr7	138229856	138229856	A	G	ENSMUST00000160436.1	5	ENSMUSG00000091002	missense	M/T	464	Tcerg1l	ENSMUST00000160436.1:c.1391T>C	ENSMUSP00000124476.1:p.Met464Thr	H-2-Kb	9	5	7	VTHFRDTLL	VTHFRDMLL	SMMPMBEC	144.295	160.048	1.109	59	0.136	193.254	171.84	0.889	177.68	224.66	340.6	468.5	166.0007308	161.8489924	160.0479073	144.2945739	M1_p20	-0.214285714	-0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.156	59	0	0	NA	7qF4	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	1	0.728502227	sgMsh2	cell line
chr7	104159943	104159943	A	C	ENSMUST00000051137.14	1	ENSMUSG00000044265	missense	L/R	220	Olfm5	ENSMUST00000051137.14:c.659T>G	ENSMUSP00000052174.8:p.Leu220Arg	H-2-Kb	9	7	5	VSRPRVVKL	VSRPLVVKL	SMMPMBEC	208.089	557.507	2.679	188	0.298	273.38	594.873	2.176	632.24	284.66	363.6	262.1	738.0911534	297.9270937	557.5065832	208.0894201	M1_p20	-0.328571429	0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.296	188	0	0	NA	7qE3	chr7-62476019-104249879	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr7	108317521	108317521	T	C	ENSMUST00000214605.1	2	ENSMUSG00000094612	missense	V/A	209	Olfr491	ENSMUST00000214605.1:c.626T>C	ENSMUSP00000150694.1:p.Val209Ala	H-2-Kb	9	10	2	VATVFVISV	VVTVFVISV	NetMHC	342.27	467.62	1.366	786	0.215	395.11	553.012	1.4	467.62	342.27	735.6	356.6	487.6519891	433.6206938	618.3722614	534.872168	M1_p20	2.628571429	3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.211	786	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	1	0.98534596	sgMsh2	cell line
chr8	109551631	109551631	C	T	ENSMUST00000042601.8	1	ENSMUSG00000037993	missense	D/N	1138	Dhx38	ENSMUST00000042601.8:c.3412G>A	ENSMUSP00000047865.7:p.Asp1138Asn	H-2-Db	9	7	5	VTAVNGEWL	VTAVDGEWL	NetMHC	127.35	8821.39	69.269	222	0.225	384.136	9938.338	25.872	8821.39	127.35	6722.3	173.2	12723.89276	660.1156057	11055.28645	595.0726634	M1_p20	0.214285714	0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.211	222	0	0	NA	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	0.98534596	sgMsh2	cell line
chr8	124897101	124897101	A	G	ENSMUST00000098312.3	NA	ENSMUSG00000074030	missense	Y/H	176	Exoc8	ENSMUST00000098312.3:c.526T>C	ENSMUSP00000095915.2:p.Tyr176His	H-2-Db	9	8	4	YLVHNGDLV	YLVYNGDLV	NetMHC	356.02	264.22	0.742	40	0.45	474.138	422.028	0.89	264.22	356.02	365.9	606.9	487.1020979	503.0602473	478.1564296	445.2152174	M1_p20	0.228571429	0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.5	40	0	0	NA	8qE2	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	3	1	sgMsh2	cell line
chr8	107183583	107183583	G	T	ENSMUST00000034400.4	1	ENSMUSG00000031924	missense	W/L	119	Cyb5b	ENSMUST00000034400.4:c.356G>T	ENSMUSP00000034400.3:p.Trp119Leu	H-2-Kb	8	11	1	LAYWFVPI	WAYWFVPI	NetMHCpan	8.4	25.7	3.06	184	0.272	19.025	29.057	1.527	22.97	9.16	25.7	8.4	38.25956254	33.86413603	32.41455024	28.88949831	M1_p20	1.357142857	1.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.266	184	0	0	NA	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	2	1	sgMsh2	cell line
chr8	56110553	56110553	A	G	ENSMUST00000000275.8	1	ENSMUSG00000038257	missense	K/R	361	Glra3	ENSMUST00000000275.8:c.1082A>G	ENSMUSP00000000275.7:p.Lys361Arg	H-2-Kb	8	6	6	VSRQHREL	VSRQHKEL	SMM	69.621	143.794	2.065	224	0.219	100.959	250.036	2.477	322.76	105.37	1502.7	872.9	143.7937467	69.6209588	177.3127641	96.54727043	M1_p20	-2.314285714	-2.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.229	224	0	0	NA	8qB2	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr8	124028933	124028933	T	C	ENSMUST00000034457.8	1	ENSMUSG00000031976	missense	Y/H	460	Urb2	ENSMUST00000034457.8:c.1378T>C	ENSMUSP00000034457.8:p.Tyr460His	H-2-Kb	8	7	5	VFQTHAKL	VFQTYAKL	SMM	70.915	18.312	0.258	184	0.255	106.19	20.473	0.193	16.15	114.49	51	301.1	18.31217795	70.91530907	22.63288934	97.89037676	M1_p20	-0.414285714	-0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.246	184	0	0	NA	8qE2	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr8	107183583	107183583	G	T	ENSMUST00000034400.4	1	ENSMUSG00000031924	missense	W/L	119	Cyb5b	ENSMUST00000034400.4:c.356G>T	ENSMUSP00000034400.3:p.Trp119Leu	H-2-Kb	8	9	3	SSLAYWFV	SSWAYWFV	SMM	53.919	40.527	0.752	184	0.272	101.717	67.113	0.66	103.35	140.25	91	131.2	40.52658414	53.91877292	43.22549746	72.2337231	M1_p20	1.371428571	1.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.266	184	0	0	NA	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	2	1	sgMsh2	cell line
chr9	21309648	21309648	T	G	ENSMUST00000115433.10	1	ENSMUSG00000003309	missense	S/R	63	Ap1m2	ENSMUST00000115433.10:c.187A>C	ENSMUSP00000111093.3:p.Ser63Arg	H-2-Kb	8	6	6	LWIKHRNL	LWIKHSNL	NetMHC	270.13	164.42	0.609	80	0.237	412.985	338.064	0.819	164.42	270.13	406.5	836.8	349.7357273	425.3436955	326.3923717	400.6268017	M1_p20	-1.1	-1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.218	80	0	0	NA	9qA3	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr8	105878842	105878842	T	C	ENSMUST00000008594.8	1	ENSMUSG00000008450	missense	F/S	103	Nutf2	ENSMUST00000008594.8:c.308T>C	ENSMUSP00000008594.7:p.Phe103Ser	H-2-Kb	8	5	7	MGFHQMSL	MGFHQMFL	NetMHCpan	61.8	73.9	1.196	264	0.295	150.906	134.413	0.891	345.7	271.66	73.9	61.8	105.6185011	124.0909187	163.2074578	177.7215122	M1_p20	0.085714286	0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.293	264	0	0	NA	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	2	1	sgMsh2	cell line
chr8	106131579	106131579	G	A	ENSMUST00000115979.8	1	ENSMUSG00000084128	missense	A/V	690	Esrp2	ENSMUST00000115979.8:c.2069C>T	ENSMUSP00000111639.2:p.Ala690Val	H-2-Kb	8	4	8	VFQAYQLV	VFQAYQLA	SMM	199.407	1190.529	5.97	219	0.269	343.809	2807.87	8.167	4148.91	339.49	3941.8	805.9	1190.529058	199.4068165	1673.940435	348.1288376	M1_p20	0.614285714	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.273	219	0	0	NA	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	2	1	sgMsh2	cell line
chr8	83725234	83725234	A	G	ENSMUST00000075843.12	1	ENSMUSG00000002885	missense	M/T	563	Adgre5	ENSMUST00000075843.12:c.1688T>C	ENSMUSP00000075240.6:p.Met563Thr	H-2-Kb	8	7	5	SSRTTVHL	SSRTMVHL	SMMPMBEC	310.27	134.196	0.433	262	0.21	344.132	130.589	0.379	73.79	367.09	280.6	1261.9	126.9813676	321.1737185	134.1961326	310.2701531	M1_p20	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.208	262	0	0	NA	8qC2	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	0.971336302	sgMsh2	cell line
chr9	26975734	26975734	T	C	ENSMUST00000060513.7	1	ENSMUSG00000031969	missense	I/V	406	Acad8	ENSMUST00000060513.7:c.1216A>G	ENSMUSP00000054370.7:p.Ile406Val	H-2-Kb	8	11	4	RMLVSRNL	RMLISRNL	NetMHC	390.02	509.23	1.306	159	0.321	455.426	500.015	1.098	509.23	390.02	490.8	477.6	470.6954498	433.2514252	624.7985313	525.7024488	M1_p20	0.7	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.313	159	0	0	NA	9qA4	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr8	94870519	94870519	A	G	ENSMUST00000211939.1	2	ENSMUSG00000031783	missense	Q/R	276	Polr2c	ENSMUST00000211939.1:c.827A>G	ENSMUSP00000148830.1:p.Gln276Arg	H-2-Kb	8	8	4	LTLRSLPL	LTLQSLPL	NetMHCpan	327.6	685.7	2.093	92	0.174	335.545	550.203	1.64	950.43	499.98	685.7	327.6	394.2212222	333.2268594	414.7056956	337.8625068	M1_p20	0.542857143	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.196	92	0	0	NA	8qC5	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	0.915297669	sgMsh2	cell line
chr8	106131579	106131579	G	A	ENSMUST00000115979.8	1	ENSMUSG00000084128	missense	A/V	690	Esrp2	ENSMUST00000115979.8:c.2069C>T	ENSMUSP00000111639.2:p.Ala690Val	H-2-Kb	9	3	9	SVFQAYQLV	SVFQAYQLA	NetMHC	32.56	334.71	10.28	219	0.269	107.145	553.156	5.163	334.71	32.56	514.6	66	591.7114865	148.2893631	726.524058	210.4989821	M1_p20	0.614285714	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.273	219	0	0	NA	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	2	1	sgMsh2	cell line
chr8	124028933	124028933	T	C	ENSMUST00000034457.8	1	ENSMUSG00000031976	missense	Y/H	460	Urb2	ENSMUST00000034457.8:c.1378T>C	ENSMUSP00000034457.8:p.Tyr460His	H-2-Kb	9	6	6	TVFQTHAKL	TVFQTYAKL	NetMHC	42.12	10.72	0.255	184	0.255	141.749	43.932	0.31	10.72	42.12	14.2	48.4	86.71814915	303.4659719	73.66310144	235.0985768	M1_p20	-0.414285714	0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.246	184	0	0	NA	8qE2	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr8	107183583	107183583	G	T	ENSMUST00000034400.4	1	ENSMUSG00000031924	missense	W/L	119	Cyb5b	ENSMUST00000034400.4:c.356G>T	ENSMUSP00000034400.3:p.Trp119Leu	H-2-Kb	9	11	1	LAYWFVPIV	WAYWFVPIV	NetMHCpan	69.6	270.9	3.892	184	0.272	100.952	192.291	1.905	152.89	75.98	270.9	69.6	185.4001153	125.9244318	199.1819593	141.9874632	M1_p20	1.7	1.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.266	184	0	0	NA	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	2	1	sgMsh2	cell line
chr8	92981967	92981967	T	C	ENSMUST00000072939.7	1	ENSMUSG00000055368	missense	L/P	237	Slc6a2	ENSMUST00000072939.7:c.710T>C	ENSMUSP00000072709.6:p.Leu237Pro	H-2-Kb	9	4	8	IGLPQWQPL	IGLPQWQLL	NetMHC	107.75	246.14	2.284	323	0.226	298.434	455.793	1.527	246.14	107.75	325.3	175.9	586.2866429	460.3731641	586.4756699	420.9688878	M1_p20	-0.5	-0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.232	323	0	0	NA	8qC5	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr8	109551631	109551631	C	T	ENSMUST00000042601.8	1	ENSMUSG00000037993	missense	D/N	1138	Dhx38	ENSMUST00000042601.8:c.3412G>A	ENSMUSP00000047865.7:p.Asp1138Asn	H-2-Kb	9	10	2	VNGEWLAEL	VDGEWLAEL	NetMHC	116.53	3630.39	31.154	222	0.225	130.917	2132.941	16.292	3630.39	116.53	5738.1	292.5	635.4918716	125.9244318	562.6651281	135.909558	M1_p20	0.157142857	0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.211	222	0	0	NA	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	0.98534596	sgMsh2	cell line
chr8	109954634	109954634	T	C	ENSMUST00000051430.6	1	ENSMUSG00000001672	missense	I/V	210	Marveld3	ENSMUST00000051430.6:c.628A>G	ENSMUSP00000052309.6:p.Ile210Val	H-2-Kb	9	11	1	VYYYQYGGA	IYYYQYGGA	NetMHC	145.17	174.71	1.203	28	0.214	185.852	259.231	1.395	174.71	145.17	594.1	549.4	260.6813732	177.0557356	257.7804634	194.6480243	M1_p20	-0.914285714	-0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.232	28	0	0	NA	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr8	105878842	105878842	T	C	ENSMUST00000008594.8	1	ENSMUSG00000008450	missense	F/S	103	Nutf2	ENSMUST00000008594.8:c.308T>C	ENSMUSP00000008594.7:p.Phe103Ser	H-2-Kb	9	4	8	IMGFHQMSL	IMGFHQMFL	SMMPMBEC	166.437	225.554	1.355	264	0.295	175.497	253.816	1.446	305.48	177.57	275.3	221.2	232.3325184	173.4243199	225.553723	166.4370463	M1_p20	0.085714286	0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.293	264	0	0	NA	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	2	1	sgMsh2	cell line
chr8	105878842	105878842	T	C	ENSMUST00000008594.8	1	ENSMUSG00000008450	missense	F/S	103	Nutf2	ENSMUST00000008594.8:c.308T>C	ENSMUSP00000008594.7:p.Phe103Ser	H-2-Kb	9	5	7	MGFHQMSLL	MGFHQMFLL	NetMHCpan	61.9	85	1.373	264	0.295	289.966	372.137	1.283	284.96	204	85	61.9	459.3143352	375.9326101	492.3228579	387.4806325	M1_p20	0.685714286	0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.293	264	0	0	NA	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	2	1	sgMsh2	cell line
chr8	56110553	56110553	A	G	ENSMUST00000000275.8	1	ENSMUSG00000038257	missense	K/R	361	Glra3	ENSMUST00000000275.8:c.1082A>G	ENSMUSP00000000275.7:p.Lys361Arg	H-2-Kb	9	6	6	VSRQHRELL	VSRQHKELL	SMM	223.414	253.577	1.135	224	0.219	294.719	447.137	1.517	629.88	360.22	1230.8	842.1	253.577082	223.4138023	264.3930288	229.2186762	M1_p20	-1.657142857	-1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.229	224	0	0	NA	8qB2	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr8	105178615	105178615	A	T	ENSMUST00000052209.8	1	ENSMUSG00000031885	missense	N/I	63	Cbfb	ENSMUST00000052209.8:c.188A>T	ENSMUSP00000059382.2:p.Asn63Ile	H-2-Kb	9	3	9	IAFVATGTI	IAFVATGTN	NetMHCpan	147.4	7924.2	53.76	126	0.286	476.809	5159.061	10.82	13674.64	401.4	7924.2	147.4	2393.922023	552.2172896	1762.990613	624.0939895	M1_p20	1.642857143	2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.287	126	0	0	NA	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	2	1	sgMsh2	cell line
chr8	48235575	48235575	C	A	ENSMUST00000033965.13	1	ENSMUSG00000031561	missense	G/W	2326	Tenm3	ENSMUST00000033965.13:c.6976G>T	ENSMUSP00000033965.6:p.Gly2326Trp	H-2-Kb	9	9	3	SNWLMLKQI	SNGLMLKQI	NetMHCpan	347.5	6162.8	17.735	270	0.207	434.55	1833.357	4.219	2475.17	447.16	6162.8	347.5	1191.543769	463.5643185	1102.173589	421.9393213	M1_p20	0.814285714	0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.211	270	0	0	NA	8qB1.1	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	0.98534596	sgMsh2	cell line
chr9	39910334	39910334	A	AT	ENSMUST00000214904.1	5	ENSMUSG00000095390	FS	Y/YX	177	Olfr229	ENSMUST00000214904.1:c.535dup	ENSMUSP00000149063.1:p.Cys179LeufsTer2	H-2-Db	9	5	9	INVINHYFL	INVINHYFC	NetMHC	93.11	9128.11	98.036	179	0.151	353.049	8486.799	24.039	9128.11	93.11	9861.4	106.9	7845.488678	683.3134984	4232.237198	599.1975101	M1_p20	1.042857143	1.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.187	179	0	0	NA	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	0.873268695	sgMsh2	cell line
chr9	100855832	100855832	A	T	ENSMUST00000129269.7	1	ENSMUSG00000037286	missense	E/V	414	Stag1	ENSMUST00000129269.7:c.1241A>T	ENSMUSP00000116205.1:p.Glu414Val	H-2-Db	9	3	9	EALSNEDCV	EALSNEDCE	NetMHC	162.17	20754.53	127.98	398	0.281	364.555	11513.819	31.583	20754.53	162.17	29954.3	951.5	2273.107631	411.7370988	1269.316718	317.3730167	M1_p20	-0.114285714	-0.114285714	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.284	398	0	0	NA	9qE3.3	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr9	44402403	44402403	G	A	ENSMUST00000213388.1	1	ENSMUSG00000032114	missense	V/I	409	Slc37a4	ENSMUST00000213388.1:c.1225G>A	ENSMUSP00000150843.1:p.Val409Ile	H-2-Kb	8	9	3	STIVFFLL	STVVFFLL	NetMHC	8.18	13.88	1.697	84	0.31	17.327	30.659	1.769	13.88	8.18	28.3	16.8	34.09887101	17.85418375	33.01718172	17.93659491	M1_p20	3.028571429	3.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.35	84	0	0	NA	9qA5.2	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	2	1	sgMsh2	cell line
chr9	106155782	106155782	A	G	ENSMUST00000036382.12	1	ENSMUSG00000020258	missense	V/A	344	Glyctk	ENSMUST00000036382.12:c.1031T>C	ENSMUSP00000047761.6:p.Val344Ala	H-2-Kb	8	10	2	RAARFYGL	RVARFYGL	NetMHCpan	27.8	30.5	1.097	52	0.288	63.802	70.784	1.109	50	37.5	30.5	27.8	91.56721386	90.10315536	110.8510982	119.8781411	M1_p20	0.571428571	0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.299	52	0	0	NA	9qF1	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr9	106155782	106155782	A	G	ENSMUST00000036382.12	1	ENSMUSG00000020258	missense	V/A	344	Glyctk	ENSMUST00000036382.12:c.1031T>C	ENSMUSP00000047761.6:p.Val344Ala	H-2-Kb	8	11	1	AARFYGLL	VARFYGLL	NetMHCpan	46.2	13.4	0.29	52	0.288	94.506	24.316	0.257	14.69	61.15	13.4	46.2	33.94220093	127.8615603	42.43654321	145.4587999	M1_p20	0.857142857	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.299	52	0	0	NA	9qF1	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr9	62919463	62919463	GT	G	ENSMUST00000098651.5	1	ENSMUSG00000032405	FS	N/X	239	Pias1	ENSMUST00000098651.5:c.716del	ENSMUSP00000096248.4:p.Asn239ThrfsTer47	H-2-Kb	8	36	0	IPLLFLGL	NA	SMM	35.953	NA	NA	143	0.259	67.42	NA	NA	NA	95.87	NA	173.8	NA	35.95340277	NA	38.97086091	M1_p20	2.285714286	2.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.252	143	0	0	NA	9qB	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr9	39258136	39258136	A	C	ENSMUST00000076903.2	NA	ENSMUSG00000063380	missense	C/G	182	Olfr945	ENSMUST00000076903.2:c.544T>G	ENSMUSP00000076169.2:p.Cys182Gly	H-2-Kb	8	6	6	INHYFGDI	INHYFCDI	NetMHCpan	102	90.9	0.891	493	0.544	276.289	313.213	1.134	217.41	182.12	90.9	102	466.380088	456.8146256	409.0157201	370.458872	M1_p20	-0.657142857	-0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.553	493	0	0	NA	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	2	1	sgMsh2	cell line
chr9	38848204	38848204	C	T	ENSMUST00000217350.1	5	ENSMUSG00000062103	missense	A/V	30	Olfr924	ENSMUST00000217350.1:c.89C>T	ENSMUSP00000149849.1:p.Ala30Val	H-2-Kb	8	11	1	VIYVITVV	AIYVITVV	NetMHC	202.6	1252.59	6.183	297	0.172	217.935	913.276	4.191	1252.59	202.6	849.9	203.2	976.6523514	259.2626764	797.5170931	232.6697911	M1_p20	2.8	2.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.167	297	0	0	NA	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	0.779870973	sgMsh2	cell line
chr9	44796345	44796345	T	G	ENSMUST00000002100.7	1	ENSMUSG00000002032	missense	S/R	218	Tmem25	ENSMUST00000002100.7:c.652A>C	ENSMUSP00000002100.7:p.Ser218Arg	H-2-Kb	8	7	5	VGVTRASL	VGVTSASL	NetMHC	207.42	171.74	0.828	70	0.171	266.032	208.604	0.784	171.74	207.42	290.8	258.7	204.5219854	333.2268594	212.686537	273.3631687	M1_p20	0.485714286	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.22	70	0	0	NA	9qA5.2	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr9	39018999	39018999	G	T	ENSMUST00000214410.1	5	ENSMUSG00000058820	missense	L/I	181	Olfr146	ENSMUST00000214410.1:c.541C>A	ENSMUSP00000149294.1:p.Leu181Ile	H-2-Kb	8	4	8	INHYFCDI	INHYFCDL	NetMHCpan	90.9	29.4	0.323	297	0.273	313.213	50.321	0.161	26.98	217.41	29.4	90.9	71.90183929	466.380088	71.24263926	409.0157201	M1_p20	-0.242857143	-0.242857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.275	297	0	0	NA	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr9	88476836	88476836	A	G	ENSMUST00000173801.7	1	ENSMUSG00000032423	missense	F/L	207	Syncrip	ENSMUST00000173801.7:c.619T>C	ENSMUSP00000133649.1:p.Phe207Leu	H-2-Kb	8	5	7	LNRGYALV	LNRGYAFV	NetMHC	300.95	433.7	1.441	117	0.145	353.739	317.073	0.896	433.7	300.95	347.9	331	249.8848923	376.4783444	286.246378	409.9585987	M1_p20	0.014285714	0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.156	117	0	0	NA	9qE3.1	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	0.728502227	sgMsh2	cell line
chr9	108052065	108052065	A	G	ENSMUST00000162355.7	1	ENSMUSG00000041528	missense	V/A	1271	Rnf123	ENSMUST00000162355.7:c.3812T>C	ENSMUSP00000125745.1:p.Val1271Ala	H-2-Kb	8	8	4	ISAAFQPC	ISAVFQPC	SMM	176.092	168.943	0.959	169	0.207	417.672	294.935	0.706	357.2	561.35	396.1	585.7	168.9429215	176.0921516	232.6697911	273.9933359	M1_p20	0.428571429	0.714285714	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.206	169	0	0	NA	9qF1	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	0.96199653	sgMsh2	cell line
chr9	106155782	106155782	A	G	ENSMUST00000036382.12	1	ENSMUSG00000020258	missense	V/A	344	Glyctk	ENSMUST00000036382.12:c.1031T>C	ENSMUSP00000047761.6:p.Val344Ala	H-2-Kb	9	10	2	RAARFYGLL	RVARFYGLL	NetMHC	16.87	23.3	1.381	52	0.288	71.279	81.97	1.15	23.3	16.87	21.8	17.5	140.6403699	125.0575741	181.6561058	157.1267038	M1_p20	0.857142857	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.299	52	0	0	NA	9qF1	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr9	41969739	41969739	T	G	ENSMUST00000060989.8	1	ENSMUSG00000049313	missense	K/T	2162	Sorl1	ENSMUST00000060989.8:c.6485A>C	ENSMUSP00000058613.8:p.Lys2162Thr	H-2-Kb	9	7	5	ILYTTHRRL	ILYTKHRRL	NetMHCpan	38.5	39.5	1.026	54	0.315	207.103	89.609	0.433	28.42	39.88	39.5	38.5	191.9154771	390.9399022	139.7172407	374.3260056	M1_p20	-1.585714286	-0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.303	54	0	0	NA	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr9	39078200	39078200	A	G	ENSMUST00000056499.3	NA	ENSMUSG00000048501	missense	F/L	182	Olfr938	ENSMUST00000056499.3:c.544T>C	ENSMUSP00000055053.2:p.Phe182Leu	H-2-Kb	9	3	9	INHYFCDLL	INHYFCDLF	NetMHC	40.99	129.13	3.15	246	0.268	94.887	238.502	2.514	129.13	40.99	365.4	57	223.9288243	132.7730709	253.0754397	146.3019114	M1_p20	0.7	0.7	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.274	246	0	0	NA	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr9	108053855	108053855	T	A	ENSMUST00000085060.2	NA	ENSMUSG00000032593	missense	L/H	159	Amigo3	ENSMUST00000085060.2:c.476T>A	ENSMUSP00000082137.2:p.Leu159His	H-2-Kb	9	6	6	QGLRMHSHL	QGLRMLSHL	NetMHC	71.11	169.93	2.39	140	0.321	491.449	475.645	0.968	169.93	71.11	397.8	363.3	553.4902819	619.5979897	773.1255038	743.4469772	M1_p20	-0.314285714	-0.314285714	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.308	140	0	0	NA	9qF1	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr9	71725634	71725634	T	G	ENSMUST00000072899.8	5	ENSMUSG00000032232	missense	N/T	145	Cgnl1	ENSMUST00000072899.8:c.434A>C	ENSMUSP00000072672.2:p.Asn145Thr	H-2-Kb	9	10	2	LTFQRHPEL	LNFQRHPEL	NetMHCpan	36.8	28.1	0.764	57	0.246	90.799	70.924	0.781	73.26	81.31	28.1	36.8	84.74420308	133.0791444	68.58829388	100.2882377	M1_p20	-1.385714286	-0.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.27	57	0	0	NA	9qD	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr9	96297705	96297705	G	GA	ENSMUST00000165768.3	1	ENSMUSG00000032411	FS	E/EX	140	Tfdp2	ENSMUST00000165768.3:c.426dup	ENSMUSP00000128260.2:p.Glu143ArgfsTer47	H-2-Kb	9	20	0	PAYQFCSGM	NA	NetMHC	85.15	NA	NA	133	0.301	106.96	NA	NA	NA	85.15	NA	165.8	NA	88.53398242	NA	125.3862749	M1_p20	0.171428571	0.171428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.28	133	0	0	NA	9qE3.3	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr9	44402403	44402403	G	A	ENSMUST00000213388.1	1	ENSMUSG00000032114	missense	V/I	409	Slc37a4	ENSMUST00000213388.1:c.1225G>A	ENSMUSP00000150843.1:p.Val409Ile	H-2-Kb	9	11	1	IVFFLLRNI	VVFFLLRNI	NetMHCpan	47.8	44.7	0.935	84	0.31	187.871	134.222	0.714	72.96	87.93	44.7	47.8	195.4834522	287.8127307	217.8963724	288.5692163	M1_p20	1.385714286	2.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.35	84	0	0	NA	9qA5.2	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	2	1	sgMsh2	cell line
chr9	79651469	79651469	G	T	ENSMUST00000071750.12	5	ENSMUSG00000032332	missense	L/M	1905	Col12a1	ENSMUST00000071750.12:c.5713C>A	ENSMUSP00000071662.6:p.Leu1905Met	H-2-Kb	9	3	9	TNYAILRNM	TNYAILRNL	NetMHCpan	55.6	21.4	0.385	119	0.378	224.841	146.602	0.652	47.67	126.75	21.4	55.6	245.5330734	322.9311952	265.0025177	359.1286062	M1_p20	0.385714286	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.378	119	0	0	NA	9qE1	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	2	1	sgMsh2	cell line
chr9	44402367	44402367	T	G	ENSMUST00000213388.1	1	ENSMUSG00000032114	missense	F/V	397	Slc37a4	ENSMUST00000213388.1:c.1189T>G	ENSMUSP00000150843.1:p.Phe397Val	H-2-Kb	9	3	9	KHYSWSTAV	KHYSWSTAF	NetMHC	183.42	228.38	1.245	104	0.24	270.33	246.344	0.911	228.38	183.42	190.8	188.2	264.3078123	352.4601324	454.2030017	587.8276359	M1_p20	0.214285714	0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.23	104	0	0	NA	9qA5.2	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr9	73931296	73931296	T	C	ENSMUST00000184666.7	5	ENSMUSG00000062151	missense	S/G	758	Unc13c	ENSMUST00000184666.7:c.2272A>G	ENSMUSP00000139027.1:p.Ser758Gly	H-2-Kb	9	7	5	MMYRGQSEL	MMYRSQSEL	NetMHCpan	127.8	84.8	0.664	320	0.212	195.611	112.34	0.574	103.59	201.94	84.8	127.8	121.0904798	189.282298	177.1128208	236.7282022	M1_p20	-1.457142857	-0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.214	320	0	0	NA	9qD	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	0.999355619	sgMsh2	cell line
chr9	39910334	39910334	A	AT	ENSMUST00000214904.1	5	ENSMUSG00000095390	FS	Y/YX	177	Olfr229	ENSMUST00000214904.1:c.535dup	ENSMUSP00000149063.1:p.Cys179LeufsTer2	H-2-Kb	9	5	9	INVINHYFL	INVINHYFC	NetMHCpan	167.6	5044.8	30.1	179	0.151	381.988	5729.26	14.999	7204.21	206.47	5044.8	167.6	6413.720055	632.5720517	3955.942769	557.5065832	M1_p20	1.042857143	1.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.187	179	0	0	NA	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	0.873268695	sgMsh2	cell line
chr9	62919463	62919463	GT	G	ENSMUST00000098651.5	1	ENSMUSG00000032405	FS	N/X	239	Pias1	ENSMUST00000098651.5:c.716del	ENSMUSP00000096248.4:p.Asn239ThrfsTer47	H-2-Kb	9	35	0	QIPLLFLGL	NA	NetMHC	208.08	NA	NA	143	0.259	350.675	NA	NA	NA	208.08	NA	349.7	NA	351.6494966	NA	597.3790667	M1_p20	2.285714286	2.385714286	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.252	143	0	0	NA	9qB	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr9	39258136	39258136	A	C	ENSMUST00000076903.2	NA	ENSMUSG00000063380	missense	C/G	182	Olfr945	ENSMUST00000076903.2:c.544T>G	ENSMUSP00000076169.2:p.Cys182Gly	H-2-Kb	9	5	7	VINHYFGDI	VINHYFCDI	NetMHC	248.12	402.57	1.622	493	0.544	313.678	336.411	1.072	402.57	248.12	262.7	378.9	382.9217191	379.4110717	289.9011913	248.4562923	M1_p20	-0.657142857	0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.553	493	0	0	NA	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	2	1	sgMsh2	cell line
chr9	39258136	39258136	A	C	ENSMUST00000076903.2	NA	ENSMUSG00000063380	missense	C/G	182	Olfr945	ENSMUST00000076903.2:c.544T>G	ENSMUSP00000076169.2:p.Cys182Gly	H-2-Kb	9	6	6	INHYFGDIL	INHYFCDIL	NetMHCpan	249.4	114.5	0.459	493	0.544	350.747	161.261	0.46	107.57	280.66	114.5	249.4	208.0223508	420.8332054	225.553723	456.2995075	M1_p20	0.385714286	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.553	493	0	0	NA	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	2	1	sgMsh2	cell line
chr9	39018999	39018999	G	T	ENSMUST00000214410.1	5	ENSMUSG00000058820	missense	L/I	181	Olfr146	ENSMUST00000214410.1:c.541C>A	ENSMUSP00000149294.1:p.Leu181Ile	H-2-Kb	9	4	8	INHYFCDII	INHYFCDLI	NetMHC	329.69	127.26	0.386	297	0.273	436.374	256.697	0.588	127.26	329.69	183.7	356.2	329.6932077	516.547186	338.259498	521.4948213	M1_p20	0.9	0.9	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.275	297	0	0	NA	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr9	59324811	59324811	A	G	ENSMUST00000026265.7	1	ENSMUSG00000025235	missense	V/A	362	Bbs4	ENSMUST00000026265.7:c.1085T>C	ENSMUSP00000026265.6:p.Val362Ala	H-2-Kb	9	8	4	RAYAEAVRL	RAYVEAVRL	NetMHCpan	175.4	120.3	0.686	195	0.226	497.9	316.494	0.636	232.02	361.77	120.3	175.4	400.9682638	634.0302809	528.7495369	724.853099	M1_p20	0.328571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	195	0	0	NA	9qB	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chr9	72619274	72619274	A	G	ENSMUST00000163401.8	2	ENSMUSG00000037674	missense	T/A	1249	Rfx7	ENSMUST00000163401.8:c.3745A>G	ENSMUSP00000127192.1:p.Thr1249Ala	H-2-Kb	9	10	2	IANVLLSKL	ITNVLLSKL	NetMHC	396.79	469.21	1.183	204	0.132	466.27	582.324	1.249	469.21	396.79	590.2	493.5	671.5989369	487.6519891	574.4470454	444.8872915	M1_p20	1.057142857	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.139	204	0	0	NA	9qD	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	0.649114163	sgMsh2	cell line
chr9	43791318	43791318	A	G	ENSMUST00000034510.8	1	ENSMUSG00000032012	missense	M/V	121	Nectin1	ENSMUST00000034510.8:c.361A>G	ENSMUSP00000034510.7:p.Met121Val	H-2-Kb	9	11	1	VYICEFATF	MYICEFATF	SMM	270.464	693.601	2.564	93	0.301	347.49	830.945	2.391	915.58	403.74	908.1	406.8	693.6014622	270.4643321	753.7893549	291.2393144	M1_p20	1.457142857	1.571428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.3	93	0	0	NA	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	sgMsh2	cell line
chrY	726493	726493	GT	G	ENSMUST00000189888.6	1	ENSMUSG00000053211	FS	N/X	424	Zfy1	ENSMUST00000189888.6:c.1271del	ENSMUSP00000140600.1:p.Asn424ThrfsTer24	H-2-Db	9	10	2	KTILNTLLI	NA	NetMHCpan	87.8	NA	NA	104	0.481	124.799	NA	NA	NA	104.53	NA	87.8	NA	150.1827319	NA	145.0674577	M1_p20	2.314285714	2.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.477	104	0	0	NA	YqA1	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	sgMsh2	cell line
chrX	133588496	133588496	A	G	ENSMUST00000149154.7	1	ENSMUSG00000051323	missense	M/T	977	Pcdh19	ENSMUST00000149154.7:c.2930T>C	ENSMUSP00000116886.1:p.Met977Thr	H-2-Db	9	5	7	WMPRNPTPT	WMPRNPMPT	NetMHC	233.44	1377.14	5.899	87	0.448	363.988	1119.682	3.076	1377.14	233.44	3001.1	2034.1	862.223787	394.1123099	717.0839465	333.8643134	M1_p20	-2.028571429	-1.557142857	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.463	87	0	0	NA	XqE3	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	sgMsh2	cell line
chrY	726493	726493	GT	G	ENSMUST00000189888.6	1	ENSMUSG00000053211	FS	N/X	424	Zfy1	ENSMUST00000189888.6:c.1271del	ENSMUSP00000140600.1:p.Asn424ThrfsTer24	H-2-Db	9	16	0	LLIKNITVL	NA	NetMHCpan	178.5	NA	NA	104	0.481	271.752	NA	NA	NA	234.78	NA	178.5	NA	381.6102225	NA	308.7237209	M1_p20	1.271428571	1.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.477	104	0	0	NA	YqA1	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	sgMsh2	cell line
chrX	169182136	169182136	CG	C	ENSMUST00000066112.11	1	ENSMUSG00000031354	FS	P/X	76	Amelx	ENSMUST00000066112.11:c.227del	ENSMUSP00000065966.5:p.Pro76ArgfsTer26	H-2-Kb	8	19	0	TTFPWCQL	NA	NetMHCpan	41.3	NA	NA	36	0.333	54.783	NA	NA	NA	62.29	NA	41.3	NA	58.30959165	NA	51.25544401	M1_p20	0.342857143	0.342857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.329	36	0	0	NA	XqF5	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	sgMsh2	cell line
chrX	57248988	57248988	A	G	ENSMUST00000033468.10	1	ENSMUSG00000031133	missense	V/A	479	Arhgef6	ENSMUST00000033468.10:c.1436T>C	ENSMUSP00000033468.4:p.Val479Ala	H-2-Kb	8	5	7	VIFMSQAV	VIFMSQVV	NetMHC	82.07	457.44	5.574	188	0.516	132.51	372.923	2.814	457.44	82.07	294	123.2	333.9950266	141.8208226	411.8508816	183.1217795	M1_p20	1.557142857	1.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.516	188	0	0	NA	XqA6	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	sgMsh2	cell line
chrX	13665387	13665387	T	C	ENSMUST00000053659.1	1	ENSMUSG00000047678	missense	V/A	58	Gpr82	ENSMUST00000053659.1:c.173T>C	ENSMUSP00000062535.1:p.Val58Ala	H-2-Kb	8	8	4	ANLATANL	ANLVTANL	NetMHC	110.98	65.42	0.589	181	0.431	127.103	105.176	0.827	65.42	110.98	97.7	151.4	116.611129	121.5458122	112.6522836	132.6600022	M1_p20	0.5	0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.441	181	0	0	NA	XqA1.1	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	sgMsh2	cell line
chrX	18264114	18264114	TA	T	ENSMUST00000052368.8	1	ENSMUSG00000037369	FS	K/X	1080	Kdm6a	ENSMUST00000052368.8:c.3241del	ENSMUSP00000061539.8:p.Thr1081ProfsTer23	H-2-Kb	8	25	0	KSGSYSYM	NA	NetMHC	225.45	NA	NA	97	0.485	286.8	NA	NA	NA	225.45	NA	399.4	NA	313.1410475	NA	260.4593785	M1_p20	-0.5	-0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.479	97	0	0	NA	XqA1.3	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	sgMsh2	cell line
chrX	112495365	112495365	A	G	ENSMUST00000113412.2	1	ENSMUSG00000025528	missense	M/V	7	2010106E10Rik	ENSMUST00000113412.2:c.19A>G	ENSMUSP00000109039.2:p.Met7Val	H-2-Kb	8	4	4	CTFVLTQM	CTFMLTQM	NetMHCpan	242.7	171.8	0.708	226	0.447	405.724	397.567	0.98	316.79	372.17	171.8	242.7	520.8827797	439.2785529	478.3436356	457.867692	M1_p20	1.114285714	1.2	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.461	226	0	0	NA	XqE1	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	sgMsh2	cell line
chrX	86747655	86747655	G	A	ENSMUST00000113966.7	5	ENSMUSG00000052372	missense	P/S	560	Il1rapl1	ENSMUST00000113966.7:c.1678C>T	ENSMUSP00000109599.1:p.Pro560Ser	H-2-Kb	9	10	2	MSFKRIEPI	MPFKRIEPI	NetMHCpan	58.3	2180.6	37.403	104	0.356	177.366	2262.711	12.757	4631.31	173.91	2180.6	58.3	2344.822647	233.4049166	1946.480243	180.8214719	M1_p20	-0.242857143	-0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.357	104	0	0	NA	XqC1	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	sgMsh2	cell line
chr9	123011604	123011604	A	G	ENSMUST00000040717.6	1	ENSMUSG00000036768	missense	Q/R	1221	Kif15	ENSMUST00000040717.6:c.3662A>G	ENSMUSP00000035490.5:p.Gln1221Arg	H-2-Kb	9	4	8	KNWLLQRRL	KNWLLQRQL	NetMHCpan	229.2	355.2	1.55	146	0.123	457.816	594.631	1.299	364.65	229.97	355.2	229.2	893.5317727	685.6618719	824.6126636	778.4845538	M1_p20	-0.285714286	-0.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.128	146	0	0	NA	9qF4	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	0.597745417	sgMsh2	cell line
chrX	57248988	57248988	A	G	ENSMUST00000033468.10	1	ENSMUSG00000031133	missense	V/A	479	Arhgef6	ENSMUST00000033468.10:c.1436T>C	ENSMUSP00000033468.4:p.Val479Ala	H-2-Kb	9	5	7	VIFMSQAVM	VIFMSQVVM	NetMHCpan	136.5	373.1	2.733	188	0.516	219.316	351.397	1.602	592.58	230.09	373.1	136.5	329.6932077	228.6177783	284.6098982	210.0148478	M1_p20	1.185714286	1.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.516	188	0	0	NA	XqA6	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	sgMsh2	cell line
chrX	112495365	112495365	A	G	ENSMUST00000113412.2	1	ENSMUSG00000025528	missense	M/V	7	2010106E10Rik	ENSMUST00000113412.2:c.19A>G	ENSMUSP00000109039.2:p.Met7Val	H-2-Kb	9	4	4	CTFVLTQML	CTFMLTQML	NetMHC	241.56	216.09	0.895	226	0.447	329.475	322.252	0.978	216.09	241.56	230.4	307.3	414.1045477	351.6494966	513.1566957	537.3410257	M1_p20	1.757142857	1.757142857	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.461	226	0	0	NA	XqE1	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	sgMsh2	cell line
chrX	9849913	9849913	T	C	ENSMUST00000057113.2	NA	ENSMUSG00000048994	missense	S/P	55	H2al3	ENSMUST00000057113.2:c.163T>C	ENSMUSP00000052025.1:p.Ser55Pro	H-2-Kb	9	6	6	LNYVTPSIL	LNYVTSSIL	SMM	217.325	118.334	0.545	226	0.535	286.985	138.425	0.482	151.65	320.37	125.2	253.6	118.334124	217.325156	242.8007366	383.9281887	M1_p20	1.157142857	1.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.53	226	0	0	NA	XqA1.1	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	sgMsh2	cell line
chrX	101673545	101673545	GA	G	ENSMUST00000044475.4	1	ENSMUSG00000034160	FS	K/X	757	Ogt	ENSMUST00000044475.4:c.2271del	ENSMUSP00000045409.4:p.Lys757AsnfsTer23	H-2-Kb	9	22	0	VTQLLICPL	NA	NetMHCpan	324.4	NA	NA	68	0.441	478.008	NA	NA	NA	401.25	NA	324.4	NA	554.7662088	NA	602.9065471	M1_p20	1.9	2.085714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.478	68	0	0	NA	XqD	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	sgMsh2	cell line
chr1	165539831	165539831	A	G	ENSMUST00000027852.14	1	ENSMUSG00000026567	missense	T/A	557	Adcy10	ENSMUST00000027852.14:c.1669A>G	ENSMUSP00000027852.8:p.Thr557Ala	H-2-Db	9	4	8	SFHQNFYAI	SFHQNFYTI	SMM	105.104	62.176	0.592	134	0.239	167.108	96.911	0.58	73.99	141.21	379.5	647.3	62.17560216	105.1041828	119.8312253	193.0056399	M1	-0.342857143	-0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	134	0	0	NA	1qH2.3	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr1	85579187	85579187	CT	C	ENSMUST00000093508.6	1	ENSMUSG00000070034	FS	K/X	385	Sp110	ENSMUST00000093508.6:c.1154del	ENSMUSP00000091226.6:p.Lys385SerfsTer13	H-2-Db	9	11	1	SAFRMRQEI	NA	SMMPMBEC	212.114	NA	NA	109	0.193	246.936	NA	NA	NA	356.88	NA	263.4	NA	230.4729708	NA	212.1143253	M1	-0.971428571	-0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.201	109	0	0	NA	1qC5	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.912982284	sgMsh2	cell line
chr1	127412243	127412243	G	T	ENSMUST00000038361.10	1	ENSMUSG00000036155	missense	V/L	454	Mgat5	ENSMUST00000038361.10:c.1360G>T	ENSMUSP00000038359.4:p.Val454Leu	H-2-Kb	8	4	8	QSLVYGKL	QSLVYGKV	NetMHC	15.26	75.8	4.967	102	0.196	52.362	246.565	4.709	75.8	15.26	265.7	39.6	232.6697911	65.12383991	260.4593785	71.90183929	M1	0.771428571	0.771428571	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.206	102	70	19	0.271428571	1qE3	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.935693286	sgMsh2	cell line
chr1	128364313	128364313	A	G	ENSMUST00000027602.14	1	ENSMUSG00000026356	missense	V/A	476	Dars	ENSMUST00000027602.14:c.1427T>C	ENSMUSP00000027602.8:p.Val476Ala	H-2-Kb	8	11	1	ATMLFLGL	VTMLFLGL	NetMHCpan	13.4	5.5	0.41	123	0.26	28.635	8.869	0.31	5.27	15.32	5.5	13.4	14.47904774	54.54312289	12.23883275	41.95077612	M1	2.142857143	2.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.248	123	190	37	0.194736842	1qE3	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr1	26687303	26687303	T	A	ENSMUST00000097801.3	1	ENSMUSG00000073722	missense	I/L	42	4931408C20Rik	ENSMUST00000097801.3:c.124A>T	ENSMUSP00000095410.3:p.Ile42Leu	H-2-Kb	8	4	8	VGLFYLLL	VGLFYLLI	NetMHCpan	13.7	64.2	4.686	400	0.052	26.691	183.161	6.862	223.23	25.73	64.2	13.7	179.3659491	27.6528565	186.956255	32.564169	M1	2.328571429	2.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.05	400	0	0	NA	1qA5	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.227110021	sgMsh2	cell line
chr1	84912361	84912361	C	A	ENSMUST00000027422.6	1	ENSMUSG00000026220	missense	A/S	408	Slc16a14	ENSMUST00000027422.6:c.1222G>T	ENSMUSP00000027422.5:p.Ala408Ser	H-2-Kb	8	6	6	LMHTYSSL	LMHTYASL	NetMHC	32.78	13.28	0.405	84	0.179	74.006	33.853	0.457	13.28	32.78	20.2	35.1	63.64144033	143.7937467	47.50507412	112.911974	M1	-0.157142857	-0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.186	84	0	0	NA	1qC5	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.844849278	sgMsh2	cell line
chr1	152855898	152855898	T	C	ENSMUST00000043560.14	1	ENSMUSG00000042772	missense	R/G	379	Smg7	ENSMUST00000043560.14:c.1135A>G	ENSMUSP00000041241.8:p.Arg379Gly	H-2-Kb	8	5	7	VSMDWLGL	VSMDWLRL	NetMHCpan	34.7	24.7	0.712	173	0.237	70.049	45.03	0.643	38.45	50.82	24.7	34.7	69.30107956	116.611129	51.61072977	89.27708467	M1	0.557142857	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.236	173	55	15	0.272727273	1qG3	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr1	132014588	132014588	A	G	ENSMUST00000086556.11	1	ENSMUSG00000026436	missense	Y/C	66	Elk4	ENSMUST00000086556.11:c.197A>G	ENSMUSP00000083743.5:p.Tyr66Cys	H-2-Kb	8	6	6	RALRYCYV	RALRYYYV	NetMHC	53.18	33.42	0.628	62	0.21	95.601	68.626	0.718	33.42	53.18	49.2	71.6	88.05215715	119.6024291	102.2680559	132.3548926	M1	0.742857143	0.742857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.224	62	66	10	0.151515152	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr1	58595689	58595689	A	T	ENSMUST00000027193.8	1	ENSMUSG00000026032	missense	I/F	67	Ndufb3	ENSMUST00000027193.8:c.199A>T	ENSMUSP00000027193.8:p.Ile67Phe	H-2-Kb	8	9	3	GNFTFPSV	GNITFPSV	NetMHCpan	49.1	289.6	5.898	70	0.1	107.5	583.368	5.427	915.1	105.67	289.6	49.1	648.2462304	133.5795574	518.4895408	109.3301641	M1	0.457142857	0.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.121	70	351	71	0.202279202	1qC1.3	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.549606251	sgMsh2	cell line
chr1	46123770	46123770	A	C	ENSMUST00000069293.9	5	ENSMUSG00000041144	missense	Q/H	425	Dnah7b	ENSMUST00000069293.9:c.1275A>C	ENSMUSP00000068738.7:p.Gln425His	H-2-Kb	8	9	3	SMHDFTDL	SMQDFTDL	NetMHCpan	98.5	275.1	2.793	344	0.256	215.13	310.019	1.441	223.63	129.14	275.1	98.5	344.9371732	301.1202761	453.6699358	309.5565516	M1	-0.342857143	-0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.248	344	3	1	0.333333333	1qC1.1	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr1	172279394	172279394	AG	A	ENSMUST00000085913.10	1	ENSMUSG00000007097	FS	P/X	786	Atp1a2	ENSMUST00000085913.10:c.2358del	ENSMUSP00000083077.4:p.Phe787SerfsTer16	H-2-Kb	8	19	0	TSPFHWAL	NA	NetMHCpan	85.5	NA	NA	109	0.275	177.212	NA	NA	NA	185.87	NA	85.5	NA	168.5543635	NA	242.5157786	M1	0.271428571	0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.264	109	0	0	NA	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr1	151351713	151351713	T	C	ENSMUST00000023918.12	1	ENSMUSG00000023150	missense	Y/H	91	Ivns1abp	ENSMUST00000023918.12:c.271T>C	ENSMUSP00000023918.6:p.Tyr91His	H-2-Kb	8	5	7	VLLNYAHT	VLLNYAYT	SMMPMBEC	192.637	198.034	1.028	149	0.168	277.822	339.303	1.221	371.18	233.73	1146.3	1299.8	307.4255792	321.9141004	198.0341096	192.6371303	M1	0.1	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.18	149	250	51	0.204	1qG1	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.817596075	sgMsh2	cell line
chr1	59199042	59199042	T	C	ENSMUST00000027178.12	1	ENSMUSG00000026024	missense	I/M	710	Als2	ENSMUST00000027178.12:c.2130A>G	ENSMUSP00000027178.6:p.Ile710Met	H-2-Kb	8	8	4	KSQMLRPL	KSQILRPL	NetMHC	256.26	392.88	1.533	69	0.246	266.552	345.964	1.298	392.88	256.26	972.8	779.2	247.5939338	270.2340064	299.0473787	262.8693795	M1	-0.128571429	-0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.261	69	55	12	0.218181818	1qC1.3	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr1	161241748	161241748	AT	A	ENSMUST00000071718.11	1	ENSMUSG00000026701	FS	K/X	216	Prdx6	ENSMUST00000071718.11:c.648del	ENSMUSP00000071636.5:p.Lys216AsnfsTer46	H-2-Kb	8	12	0	TSVIHPSL	NA	NetMHCpan	142.9	NA	NA	179	0.207	184.108	NA	NA	NA	256.58	NA	142.9	NA	176.9049561	NA	191.3110256	M1	0.871428571	0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.218	179	1112	4	0.003597122	1qH2.1	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.990199691	sgMsh2	cell line
chr1	161241748	161241748	AT	A	ENSMUST00000071718.11	1	ENSMUSG00000026701	FS	K/X	216	Prdx6	ENSMUST00000071718.11:c.648del	ENSMUSP00000071636.5:p.Lys216AsnfsTer46	H-2-Kb	8	31	0	IQYWGLRM	NA	NetMHCpan	123.5	NA	NA	179	0.207	384.003	NA	NA	NA	358.99	NA	123.5	NA	476.1458462	NA	409.0157201	M1	-0.7	-0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.218	179	1112	4	0.003597122	1qH2.1	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.990199691	sgMsh2	cell line
chr1	19231030	19231030	G	T	ENSMUST00000027059.10	1	ENSMUSG00000025927	missense	A/S	320	Tfap2b	ENSMUST00000027059.10:c.958G>T	ENSMUSP00000027059.4:p.Ala320Ser	H-2-Kb	8	10	2	LSRDFGYI	LARDFGYI	NetMHCpan	265.7	500.5	1.884	65	0.308	365.934	951.903	2.601	1043.06	388.71	500.5	265.7	990.238939	386.1357391	913.5661511	345.7323355	M1	-0.457142857	-0.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.304	65	0	0	NA	1qA3	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr1	154633618	154633618	A	G	ENSMUST00000187541.6	1	ENSMUSG00000004110	missense	L/P	297	Cacna1e	ENSMUST00000187541.6:c.890T>C	ENSMUSP00000140937.1:p.Leu297Pro	H-2-Kb	8	8	4	DNIPFAVL	DNILFAVL	SMM	178.131	93.485	0.525	77	0.26	412.973	165.678	0.401	220.76	608.34	374.2	572	93.48458404	178.1312026	110.5961477	253.9451951	M1	1.714285714	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.26	77	0	0	NA	1qG3	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr1	161241748	161241748	AT	A	ENSMUST00000071718.11	1	ENSMUSG00000026701	FS	K/X	216	Prdx6	ENSMUST00000071718.11:c.648del	ENSMUSP00000071636.5:p.Lys216AsnfsTer46	H-2-Kb	8	29	0	LHIQYWGL	NA	SMMPMBEC	213.668	NA	NA	179	0.207	293.427	NA	NA	NA	918.75	NA	362.6	NA	224.2538976	NA	213.6682534	M1	-0.142857143	-0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.218	179	1112	4	0.003597122	1qH2.1	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.990199691	sgMsh2	cell line
chr1	151351713	151351713	T	C	ENSMUST00000023918.12	1	ENSMUSG00000023150	missense	Y/H	91	Ivns1abp	ENSMUST00000023918.12:c.271T>C	ENSMUSP00000023918.6:p.Tyr91His	H-2-Kb	9	7	5	LNYAHTAQL	LNYAYTAQL	NetMHCpan	10.4	5.2	0.5	149	0.168	31.415	21.341	0.679	6.52	17.41	5.2	10.4	48.31811688	60.27122243	36.16179668	45.42030017	M1	-0.185714286	-0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.18	149	250	51	0.204	1qG1	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.817596075	sgMsh2	cell line
chr1	46123770	46123770	A	C	ENSMUST00000069293.9	5	ENSMUSG00000041144	missense	Q/H	425	Dnah7b	ENSMUST00000069293.9:c.1275A>C	ENSMUSP00000068738.7:p.Gln425His	H-2-Kb	9	8	4	VSMHDFTDL	VSMQDFTDL	NetMHCpan	139.1	150.5	1.082	344	0.256	189.106	200.755	1.062	163.69	179.03	150.5	139.1	376.7992242	312.6871254	237.82089	199.1819593	M1	-0.342857143	0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.248	344	3	1	0.333333333	1qC1.1	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr1	128364313	128364313	A	G	ENSMUST00000027602.14	1	ENSMUSG00000026356	missense	V/A	476	Dars	ENSMUST00000027602.14:c.1427T>C	ENSMUSP00000027602.8:p.Val476Ala	H-2-Kb	9	6	6	IGLERATML	IGLERVTML	NetMHCpan	169.6	134.8	0.795	123	0.26	303	226.99	0.749	136.11	195.56	134.8	169.6	457.2039776	492.1641774	317.8703353	410.4403034	M1	0.371428571	0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.248	123	190	37	0.194736842	1qE3	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr1	85579187	85579187	CT	C	ENSMUST00000093508.6	1	ENSMUSG00000070034	FS	K/X	385	Sp110	ENSMUST00000093508.6:c.1154del	ENSMUSP00000091226.6:p.Lys385SerfsTer13	H-2-Kb	9	11	1	SAFRMRQEI	NA	NetMHC	222.54	NA	NA	109	0.193	380.963	NA	NA	NA	222.54	NA	325.3	NA	436.6264089	NA	527.5334467	M1	-0.971428571	-0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.201	109	0	0	NA	1qC5	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.912982284	sgMsh2	cell line
chr1	172279394	172279394	AG	A	ENSMUST00000085913.10	1	ENSMUSG00000007097	FS	P/X	786	Atp1a2	ENSMUST00000085913.10:c.2358del	ENSMUSP00000083077.4:p.Phe787SerfsTer16	H-2-Kb	9	9	4	ITPSCCSSL	NA	NetMHC	256.79	NA	NA	109	0.275	496.451	NA	NA	NA	256.79	NA	338.1	NA	654.8020042	NA	713.2634994	M1	0.685714286	0.8	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;Vardict	3	0.264	109	0	0	NA	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr1	74919233	74919233	A	G	ENSMUST00000094844.3	1	ENSMUSG00000047021	missense	V/A	905	Cfap65	ENSMUST00000094844.3:c.2714T>C	ENSMUSP00000092440.3:p.Val905Ala	H-2-Kb	9	9	3	ATAHYRIRL	ATVHYRIRL	NetMHCpan	274.9	140.7	0.512	108	0.324	381.627	257.937	0.676	144.98	285.45	140.7	274.9	471.0966327	523.7330732	370.8941642	477.8042407	M1	-0.485714286	-0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.319	108	0	0	NA	1qC4	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr1	173270231	173270231	A	G	ENSMUST00000213420.1	5	ENSMUSG00000049605	missense	S/G	19	Olfr418	ENSMUST00000213420.1:c.55A>G	ENSMUSP00000150427.1:p.Ser19Gly	H-2-Kb	9	4	8	FVFQGFSGF	FVFQGFSSF	NetMHCpan	196.3	191.2	0.974	167	0.102	310.099	338.26	1.091	338.26	307.51	191.2	196.3	350.8407252	312.6871254	338.259498	332.8511027	M1	0.471428571	1.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.097	167	0	0	NA	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.440593441	sgMsh2	cell line
chr1	26687303	26687303	T	A	ENSMUST00000097801.3	1	ENSMUSG00000073722	missense	I/L	42	4931408C20Rik	ENSMUST00000097801.3:c.124A>T	ENSMUSP00000095410.3:p.Ile42Leu	H-2-Kb	9	6	6	LFYLLLPFL	LFYLLIPFL	SMM	169.087	269.222	1.592	400	0.052	259.918	394.397	1.517	487.32	313.18	644.9	591.2	269.2216614	169.0869148	301.4740949	206.6569426	M1	2.157142857	2.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.05	400	0	0	NA	1qA5	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.227110021	sgMsh2	cell line
chr1	46123770	46123770	A	C	ENSMUST00000069293.9	5	ENSMUSG00000041144	missense	Q/H	425	Dnah7b	ENSMUST00000069293.9:c.1275A>C	ENSMUSP00000068738.7:p.Gln425His	H-2-Kb	9	9	3	SMHDFTDLI	SMQDFTDLI	NetMHC	356.22	620.19	1.741	344	0.256	478.537	975.149	2.038	620.19	356.22	1982.2	795.9	822.4509375	404.6783774	1127.84651	552.3953321	M1	0.028571429	0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.248	344	3	1	0.333333333	1qC1.1	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr1	127412243	127412243	G	T	ENSMUST00000038361.10	1	ENSMUSG00000036155	missense	V/L	454	Mgat5	ENSMUST00000038361.10:c.1360G>T	ENSMUSP00000038359.4:p.Val454Leu	H-2-Kb	9	6	6	LVYGKLDSF	LVYGKVDSF	SMM	278.042	542.138	1.95	102	0.196	372.202	726.824	1.953	911.51	463.7	1434.9	1078.9	542.1381881	278.0417415	480.0096849	280.704904	M1	-0.471428571	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.206	102	70	19	0.271428571	1qE3	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.935693286	sgMsh2	cell line
chr1	150808584	150808584	C	A	ENSMUST00000074783.11	5	ENSMUSG00000066842	missense	G/C	412	Hmcn1	ENSMUST00000074783.11:c.1234G>T	ENSMUSP00000074340.5:p.Gly412Cys	H-2-Kb	9	5	7	TGYDKDCYL	TGYDKDGYL	SMMPMBEC	281.352	241.129	0.857	85	0.224	397.422	570.225	1.435	814.53	465.91	815.3	889.7	325.9192408	328.9349344	241.1293081	281.3519957	M1	-1.028571429	-1.028571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.205	85	0	0	NA	1qG1	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.931151086	sgMsh2	cell line
chr1	26687303	26687303	T	A	ENSMUST00000097801.3	1	ENSMUSG00000073722	missense	I/L	42	4931408C20Rik	ENSMUST00000097801.3:c.124A>T	ENSMUSP00000095410.3:p.Ile42Leu	H-2-Kb	9	3	9	GVGLFYLLL	GVGLFYLLI	SMM	121.649	302.072	2.483	400	0.052	349.188	926.052	2.652	1511.5	551.06	4204.8	1276	302.0716724	121.6494081	340.6042008	147.3160278	M1	2.328571429	2.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.05	400	0	0	NA	1qA5	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.227110021	sgMsh2	cell line
chr10	68778643	68778643	T	C	ENSMUST00000080995.7	1	ENSMUSG00000060044	missense	L/P	296	Tmem26	ENSMUST00000080995.7:c.887T>C	ENSMUSP00000079789.6:p.Leu296Pro	H-2-Db	9	5	7	FAVKNSPVM	FAVKNSLVM	NetMHC	8.71	9.25	1.062	128	0.258	25.374	27.679	1.091	9.25	8.71	9.8	10.7	46.62512402	43.51309752	45.5585612	40.04700113	M1	0.071428571	0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.259	128	0	0	NA	10qB5.3	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr10	24244309	24244309	A	G	ENSMUST00000095784.2	1	ENSMUSG00000020000	missense	M/V	112	Moxd1	ENSMUST00000095784.2:c.334A>G	ENSMUSP00000093460.2:p.Met112Val	H-2-Db	9	9	3	YAVENSTHT	YAMENSTHT	NetMHC	73.96	39.04	0.528	122	0.189	278.875	128.413	0.46	39.04	73.96	85.6	282.6	197.0697656	337.7691648	171.2261138	275.1503059	M1	-1.171428571	-0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.218	122	4	0	0	10qA4	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.990199691	sgMsh2	cell line
chr10	75640498	75640498	AG	A	ENSMUST00000095541.10	1	ENSMUSG00000006342	FS	P/X	311	Susd2	ENSMUST00000095541.10:c.933del	ENSMUSP00000093197.3:p.Cys312AlafsTer62	H-2-Db	9	24	0	SSLTMVVTL	NA	NetMHC	85.8	NA	NA	27	0.185	141.249	NA	NA	NA	85.8	NA	122.7	NA	193.0278618	NA	159.7975071	M1	2.357142857	2.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.165	27	0	0	NA	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.749463069	sgMsh2	cell line
chr10	14128134	14128134	A	G	ENSMUST00000191138.6	1	ENSMUSG00000015501	missense	N/D	159	Hivep2	ENSMUST00000191138.6:c.475A>G	ENSMUSP00000140150.1:p.Asn159Asp	H-2-Db	9	5	7	KKISNLDPA	KKISNLNPA	NetMHC	212.8	804.67	3.781	106	0.283	283.493	769.228	2.713	804.67	212.8	2973.4	2048.4	667.7593842	260.3874209	733.7869774	306.5984818	M1	0.1	0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.289	106	23	5	0.217391304	10qA2	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr10	68778643	68778643	T	C	ENSMUST00000080995.7	1	ENSMUSG00000060044	missense	L/P	296	Tmem26	ENSMUST00000080995.7:c.887T>C	ENSMUSP00000079789.6:p.Leu296Pro	H-2-Db	11	5	7	FAVKNSPVMAL	FAVKNSLVMAL	NetMHCpan	139.4	136.7	0.981	128	0.258	479.924	423.713	0.883	274.55	315.59	136.7	139.4	572.8751711	644.2582669	2605.313561	2641.557083	M1	0.828571429	0.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.259	128	0	0	NA	10qB5.3	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr10	50754122	50754122	G	T	ENSMUST00000035606.9	5	ENSMUSG00000038774	missense	S/I	1769	Ascc3	ENSMUST00000035606.9:c.5306G>T	ENSMUSP00000036726.8:p.Ser1769Ile	H-2-Kb	8	8	4	MNPIYYSL	MNPSYYSL	NetMHC	10.83	12.27	1.133	136	0.243	32.613	36.465	1.118	12.27	10.83	28.9	21.7	44.02911945	43.52512229	62.62388407	64.23030732	M1	-0.028571429	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.267	136	94	14	0.14893617	10qB3	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr10	50707714	50707714	T	C	ENSMUST00000035606.9	5	ENSMUSG00000038774	missense	Y/H	920	Ascc3	ENSMUST00000035606.9:c.2758T>C	ENSMUSP00000036726.8:p.Tyr920His	H-2-Kb	8	11	1	HTYLYVRM	YTYLYVRM	NetMHC	13.99	6.77	0.484	89	0.135	22.284	11.786	0.529	6.77	13.99	8.2	14.8	16.50973111	38.70258739	15.37234066	29.76733808	M1	0.3	0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.145	89	127	16	0.125984252	10qB3	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.658619061	sgMsh2	cell line
chr10	44441640	44441640	TG	T	ENSMUST00000105490.2	1	ENSMUSG00000038151	FS	H/X	396	Prdm1	ENSMUST00000105490.2:c.1186del	ENSMUSP00000101129.2:p.His396ThrfsTer29	H-2-Kb	8	15	0	LSFLLTML	NA	NetMHC	25.97	NA	NA	91	0.165	38.074	NA	NA	NA	25.97	NA	27.2	NA	55.81359543	NA	48.94856902	M1	2.085714286	2.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.172	91	0	0	NA	10qB2	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.781258472	sgMsh2	cell line
chr10	127170070	127170070	CT	C	ENSMUST00000006914.10	1	ENSMUSG00000006731	FS	F/X	302	B4galnt1	ENSMUST00000006914.10:c.907del	ENSMUSP00000006914.9:p.Tyr303ThrfsTer6	H-2-Kb	8	6	7	ASIRRFTL	ASIRRFYP	NetMHC	29	3440.11	118.624	110	0.191	210.968	4453.498	21.11	3440.11	29	1848.8	57.4	6176.465217	435.2512229	5466.885777	364.5356443	M1	0.085714286	0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.201	110	57	5	0.087719298	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.912982284	sgMsh2	cell line
chr10	50707714	50707714	T	C	ENSMUST00000035606.9	5	ENSMUSG00000038774	missense	Y/H	920	Ascc3	ENSMUST00000035606.9:c.2758T>C	ENSMUSP00000036726.8:p.Tyr920His	H-2-Kb	8	9	3	MSHTYLYV	MSYTYLYV	NetMHCpan	49.1	5.5	0.112	89	0.135	66.247	6.263	0.095	3.9	49.75	5.5	49.1	7.026515361	82.74466462	8.142166892	82.93541077	M1	0.1	0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.145	89	127	16	0.125984252	10qB3	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.658619061	sgMsh2	cell line
chr10	81509375	81509375	A	G	ENSMUST00000043709.7	1	ENSMUSG00000034792	missense	W/R	219	Gna15	ENSMUST00000043709.7:c.655T>C	ENSMUSP00000049175.7:p.Trp219Arg	H-2-Kb	8	11	1	RIHCFENV	WIHCFENV	SMM	346.529	467.455	1.349	95	0.221	369.99	655.698	1.772	843.94	365.18	1509.8	374.8	467.4552051	346.5293309	451.5855118	392.4099402	M1	0.542857143	0.542857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.247	95	1	1	1	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr10	44441640	44441640	TG	T	ENSMUST00000105490.2	1	ENSMUSG00000038151	FS	H/X	396	Prdm1	ENSMUST00000105490.2:c.1186del	ENSMUSP00000101129.2:p.His396ThrfsTer29	H-2-Kb	8	11	1	TSHQLSFL	NA	SMMPMBEC	169.723	NA	NA	91	0.165	280.081	NA	NA	NA	384.07	NA	533.6	NA	176.0921516	NA	169.7227266	M1	0.3	0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.172	91	0	0	NA	10qB2	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.781258472	sgMsh2	cell line
chr10	76533574	76533574	T	C	ENSMUST00000048678.6	1	ENSMUSG00000033105	missense	V/A	82	Lss	ENSMUST00000048678.6:c.245T>C	ENSMUSP00000046856.6:p.Val82Ala	H-2-Kb	8	10	2	GATFYAKL	GVTFYAKL	NetMHCpan	140.1	129.9	0.927	69	0.275	394.062	293.67	0.745	254.88	428.59	129.9	140.1	497.4391928	489.4856902	332.4604589	359.5340277	M1	0.614285714	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.28	69	157	43	0.27388535	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr10	10719563	10719563	T	A	ENSMUST00000044306.12	1	ENSMUSG00000019828	missense	T/S	774	Grm1	ENSMUST00000044306.12:c.2320A>T	ENSMUSP00000037255.6:p.Thr774Ser	H-2-Kb	8	7	5	YAFKSRNV	YAFKTRNV	NetMHCpan	408.8	503.2	1.231	135	0.304	484.728	629.347	1.298	622.28	493.31	503.2	408.8	645.2678095	476.1458462	636.4144033	596.6779652	M1	-0.557142857	-0.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.311	135	0	0	NA	10qA1	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr10	80835604	80835604	A	G	ENSMUST00000053986.8	1	ENSMUSG00000051067	missense	I/T	164	Lingo3	ENSMUST00000053986.8:c.491T>C	ENSMUSP00000054960.7:p.Ile164Thr	H-2-Kb	9	11	1	TSRRAFAGL	ISRRAFAGL	NetMHC	9.44	4.68	0.496	26	0.231	154.642	85.248	0.551	4.68	9.44	17.7	47.4	152.7953016	261.8846237	182.9152858	302.8656361	M1	0.114285714	0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.269	26	0	0	NA	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr10	76533574	76533574	T	C	ENSMUST00000048678.6	1	ENSMUSG00000033105	missense	V/A	82	Lss	ENSMUST00000048678.6:c.245T>C	ENSMUSP00000046856.6:p.Val82Ala	H-2-Kb	9	9	3	NGATFYAKL	NGVTFYAKL	NetMHCpan	39.1	21.6	0.552	69	0.275	250.937	182.7	0.728	25.58	64.1	21.6	39.1	497.86317	553.4902819	339.8208329	437.7740356	M1	0.614285714	0.614285714	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.28	69	157	43	0.27388535	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr10	26271888	26271888	T	C	ENSMUST00000060716.5	5	ENSMUSG00000051354	missense	L/P	487	Samd3	ENSMUST00000060716.5:c.1460T>C	ENSMUSP00000057805.5:p.Leu487Pro	H-2-Kb	9	6	6	QTFNFPETL	QTFNFLETL	NetMHC	70.68	27.41	0.388	94	0.234	201.184	82.234	0.409	27.41	70.68	32	90.4	132.4677013	311.967965	170.7064772	407.6148523	M1	0.014285714	0.014285714	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.242	94	0	0	NA	10qA4	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr10	75640498	75640498	AG	A	ENSMUST00000095541.10	1	ENSMUSG00000006342	FS	P/X	311	Susd2	ENSMUST00000095541.10:c.933del	ENSMUSP00000093197.3:p.Cys312AlafsTer62	H-2-Kb	9	24	0	SSLTMVVTL	NA	NetMHC	155.35	NA	NA	27	0.185	294.571	NA	NA	NA	155.35	NA	183.4	NA	453.0123063	NA	405.7420321	M1	2.357142857	2.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.165	27	0	0	NA	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.749463069	sgMsh2	cell line
chr10	50754122	50754122	G	T	ENSMUST00000035606.9	5	ENSMUSG00000038774	missense	S/I	1769	Ascc3	ENSMUST00000035606.9:c.5306G>T	ENSMUSP00000036726.8:p.Ser1769Ile	H-2-Kb	9	7	5	IMNPIYYSL	IMNPSYYSL	NetMHCpan	106.8	122.5	1.147	136	0.243	213.697	155.456	0.727	120.49	198.25	122.5	106.8	188.4126249	229.1447967	231.3396105	261.9690589	M1	-0.028571429	0.457142857	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.267	136	94	14	0.14893617	10qB3	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr10	79865469	79865469	A	G	ENSMUST00000092325.10	1	ENSMUSG00000035835	missense	V/A	513	Plppr3	ENSMUST00000092325.10:c.1538T>C	ENSMUSP00000089979.4:p.Val513Ala	H-2-Kb	9	10	2	SARAKWLSM	SVRAKWLSM	NetMHC	322.31	332.34	1.031	57	0.14	381.326	434.988	1.141	332.34	322.31	908.5	898.8	418.8996524	372.4860392	451.0762902	390.1665199	M1	-0.371428571	-0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.154	57	7	1	0.142857143	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.699498864	sgMsh2	cell line
chr10	50707714	50707714	T	C	ENSMUST00000035606.9	5	ENSMUSG00000038774	missense	Y/H	920	Ascc3	ENSMUST00000035606.9:c.2758T>C	ENSMUSP00000036726.8:p.Tyr920His	H-2-Kb	9	6	6	VRWMSHTYL	VRWMSYTYL	NetMHCpan	404.6	159.1	0.393	89	0.135	479.048	160.314	0.335	97.7	442.57	159.1	404.6	171.8343562	601.3260247	161.5288124	515.5253194	M1	-0.171428571	-0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.145	89	127	16	0.125984252	10qB3	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.658619061	sgMsh2	cell line
chr10	23897365	23897365	T	C	ENSMUST00000041416.7	1	ENSMUSG00000037440	missense	Y/H	97	Vnn1	ENSMUST00000041416.7:c.289T>C	ENSMUSP00000040599.7:p.Tyr97His	H-2-Kb	9	7	5	TIYPHLEEI	TIYPYLEEI	NetMHCpan	162.8	59.8	0.367	63	0.349	280.695	187.481	0.668	155.05	490.72	59.8	162.8	228.6177783	285.1740477	219.9125427	276.216743	M1	-0.685714286	-0.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.362	63	710	184	0.25915493	10qA4	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr10	50707714	50707714	T	C	ENSMUST00000035606.9	5	ENSMUSG00000038774	missense	Y/H	920	Ascc3	ENSMUST00000035606.9:c.2758T>C	ENSMUSP00000036726.8:p.Tyr920His	H-2-Kb	9	10	2	SHTYLYVRM	SYTYLYVRM	NetMHCpan	397.2	490.1	1.234	89	0.135	434.19	409.192	0.942	575.2	504.03	490.1	397.2	313.4079437	434.6202928	328.2842143	433.7604991	M1	0.3	0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.145	89	127	16	0.125984252	10qB3	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.658619061	sgMsh2	cell line
chr11	36008549	36008549	T	C	ENSMUST00000102801.7	5	ENSMUSG00000049336	missense	Y/C	2594	Tenm2	ENSMUST00000102801.7:c.7781A>G	ENSMUSP00000099865.1:p.Tyr2594Cys	H-2-Db	9	5	7	SVLNNACYL	SVLNNAYYL	NetMHCpan	29.4	22.1	0.752	141	0.184	58.079	41.36	0.712	16.41	35.69	22.1	29.4	60.62056782	80.46740575	79.53714539	98.30373071	M1	0.514285714	0.642857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.179	141	0	0	NA	11qA4	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.813053875	sgMsh2	cell line
chr11	43556667	43556667	G	T	ENSMUST00000050574.6	1	ENSMUSG00000044707	missense	R/L	59	Ccnjl	ENSMUST00000050574.6:c.176G>T	ENSMUSP00000058111.6:p.Arg59Leu	H-2-Db	9	9	3	SALHLAIYL	SARHLAIYL	NetMHC	172.76	6022.1	34.858	50	0.32	214.407	4374.189	20.401	6022.1	172.76	8244.8	501.5	2082.667788	190.8182902	2726.277127	237.9961875	M1	1.885714286	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.321	50	5	0	0	11qB1.1	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr11	58757857	58757857	G	A	ENSMUST00000215071.1	5	ENSMUSG00000107677	missense	S/N	64	Olfr316	ENSMUST00000215071.1:c.191G>A	ENSMUSP00000151136.1:p.Ser64Asn	H-2-Db	9	7	5	YFLLNQLSI	YFLLSQLSI	SMM	53.164	1078.003	20.277	444	0.088	141.124	3409.713	24.161	8143.16	200.67	5247	352.8	1078.003076	53.16428776	1572.425217	81.57742638	M1	1.157142857	1.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.079	444	0	0	NA	11qB1.3	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.358833833	sgMsh2	cell line
chr11	58720856	58720856	C	T	ENSMUST00000214728.1	5	ENSMUSG00000108265	missense	S/N	64	Olfr318	ENSMUST00000214728.1:c.191G>A	ENSMUSP00000149053.1:p.Ser64Asn	H-2-Db	9	7	5	YFFLNQLSI	YFFLSQLSI	SMM	106.812	2165.808	20.277	315	0.035	221.224	3786.002	17.114	8823.11	457.1	4820.5	299.7	2165.808232	106.8119884	2751.503059	142.7479894	M1	1.014285714	1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.037	315	0	0	NA	11qB1.3	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.168061415	sgMsh2	cell line
chr10	129501829	129501829	T	C	ENSMUST00000218901.1	NA	ENSMUSG00000044025	missense	F/S	315	Olfr790	ENSMUST00000218901.1:c.944T>C	ENSMUSP00000151759.1:p.Phe315Ser	H-2-Kb	8	13	2	ISFSSKNL	IFFSSKNL	NetMHCpan	18.5	115.8	6.259	59	0.237	19.094	83.126	4.354	110.95	18.52	115.8	18.5	45.89231861	19.66708524	55.30189331	20.68902384	M1	-0.457142857	-0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	59	0	0	NA	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr10	127507730	127507730	A	T	ENSMUST00000035839.2	1	ENSMUSG00000040287	missense	Y/F	247	Stac3	ENSMUST00000035839.2:c.740A>T	ENSMUSP00000048148.2:p.Tyr247Phe	H-2-Kb	8	8	4	QSHFFVAL	QSHYFVAL	NetMHCpan	21.8	26.6	1.22	97	0.299	43.547	46.774	1.074	19.76	38.37	26.6	21.8	66.94836882	48.72367077	80.48964279	63.34903447	M1	1.628571429	1.628571429	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.292	97	0	0	NA	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr10	129626025	129626025	A	G	ENSMUST00000204979.2	2	ENSMUSG00000095002	missense	L/P	12	Olfr798	ENSMUST00000204979.2:c.35T>C	ENSMUSP00000144716.1:p.Leu12Pro	H-2-Kb	8	5	7	SVSEFIPL	SVSEFILL	NetMHC	38.39	159.69	4.16	95	0.305	72.402	215.586	2.978	159.69	38.39	96.3	42.3	271.4813499	102.5038081	318.9627742	115.8083836	M1	1.342857143	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.335	95	0	0	NA	10qD3	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	sgMsh2	cell line
chr11	69421776	69421776	G	A	ENSMUST00000108659.1	5	ENSMUSG00000005237	missense	T/I	4321	Dnah2	ENSMUST00000108659.1:c.12962C>T	ENSMUSP00000104299.1:p.Thr4321Ile	H-2-Kb	8	11	1	IGFLTAVL	TGFLTAVL	NetMHCpan	35.6	138.3	3.885	41	0.317	41.753	136.558	3.271	220.51	43.81	138.3	35.6	134.8155538	48.16593553	109.5821962	39.69538331	M1	2.185714286	2.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.325	41	1	0	0	11qB3	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr11	66094123	66094123	T	C	ENSMUST00000080665.9	5	ENSMUSG00000056752	missense	R/G	1207	Dnah9	ENSMUST00000080665.9:c.3619A>G	ENSMUSP00000079494.3:p.Arg1207Gly	H-2-Kb	8	10	2	VGQQVAPL	VRQQVAPL	SMM	66.182	315.312	4.764	78	0.179	74.627	1070.287	14.342	1743.62	66.89	2996.9	350.4	315.3116375	66.18201718	396.9538331	82.36448742	M1	0.114285714	0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	78	0	0	NA	11qB3	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.908440084	sgMsh2	cell line
chr11	78231811	78231811	GT	G	ENSMUST00000002121.4	1	ENSMUSG00000002052	FS	K/X	195	Supt6	ENSMUST00000002121.4:c.585del	ENSMUSP00000002121.4:p.Lys195AsnfsTer69	H-2-Kb	8	56	0	MSTRMMRL	NA	NetMHC	83.9	NA	NA	149	0.315	132.086	NA	NA	NA	83.9	NA	282.2	NA	120.7090967	NA	143.4630303	M1	-0.414285714	-0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.313	149	157	2	0.012738854	11qB5	chr11-69590981-82929860	4	4	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr11	34688463	34688463	A	T	ENSMUST00000093193.11	1	ENSMUSG00000020143	missense	L/M	708	Dock2	ENSMUST00000093193.11:c.2122T>A	ENSMUSP00000090884.5:p.Leu708Met	H-2-Kb	8	9	3	ATMAYKKL	ATLAYKKL	NetMHCpan	62.7	80.7	1.287	175	0.257	117.441	94.582	0.805	84.03	96.29	80.7	62.7	118.7790917	204.0515979	105.1332282	138.5925865	M1	-0.328571429	-0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.26	175	0	0	NA	11qA4	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr10	129754686	129754686	T	TA	ENSMUST00000213379.1	5	ENSMUSG00000050478	FS	-/X	254-255	Olfr807	ENSMUST00000213379.1:c.762dup	ENSMUSP00000149172.1:p.Met255TyrfsTer8	H-2-Kb	8	10	3	IFYVHQTF	NA	NetMHC	148.45	NA	NA	133	0.256	217.009	NA	NA	NA	148.45	NA	182.4	NA	251.6170116	NA	275.2580317	M1	0.157142857	0.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.266	133	0	0	NA	10qD3	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	sgMsh2	cell line
chr11	78231811	78231811	GT	G	ENSMUST00000002121.4	1	ENSMUSG00000002052	FS	K/X	195	Supt6	ENSMUST00000002121.4:c.585del	ENSMUSP00000002121.4:p.Lys195AsnfsTer69	H-2-Kb	8	35	0	WTLTMMNL	NA	SMM	143.133	NA	NA	149	0.315	152.936	NA	NA	NA	158.39	NA	451.7	NA	143.1330745	NA	147.4823333	M1	0.928571429	0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.313	149	157	2	0.012738854	11qB5	chr11-69590981-82929860	4	4	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr11	58720856	58720856	C	T	ENSMUST00000214728.1	5	ENSMUSG00000108265	missense	S/N	64	Olfr318	ENSMUST00000214728.1:c.191G>A	ENSMUSP00000149053.1:p.Ser64Asn	H-2-Kb	8	6	6	MYFFLNQL	MYFFLSQL	NetMHCpan	78.1	31.7	0.406	315	0.035	257.722	151.154	0.586	137.21	245.21	31.7	78.1	167.0090478	270.2340064	165.0973111	284.9311953	M1	0.7	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.037	315	0	0	NA	11qB1.3	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.168061415	sgMsh2	cell line
chr11	58757857	58757857	G	A	ENSMUST00000215071.1	5	ENSMUSG00000107677	missense	S/N	64	Olfr316	ENSMUST00000215071.1:c.191G>A	ENSMUSP00000151136.1:p.Ser64Asn	H-2-Kb	8	6	6	MYFLLNQL	MYFLLSQL	NetMHCpan	183.7	77.4	0.421	444	0.088	238.921	133.441	0.559	129.56	253.53	77.4	183.7	148.8469706	240.8463117	137.3219621	236.9954455	M1	0.842857143	0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.079	444	0	0	NA	11qB1.3	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.358833833	sgMsh2	cell line
chr11	24049338	24049338	T	C	ENSMUST00000068360.1	1	ENSMUSG00000055010	missense	N/S	86	A830031A19Rik	ENSMUST00000068360.1:c.257A>G	ENSMUSP00000063283.1:p.Asn86Ser	H-2-Kb	8	11	1	SIMVVTTL	NIMVVTTL	NetMHCpan	201.2	1858.9	9.239	118	0.331	334.243	2516.896	7.53	6500.35	268.78	1858.9	201.2	2765.28565	435.2512229	2268.506354	399.7053856	M1	2.457142857	2.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.339	118	0	0	NA	11qA3.2	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr11	72058021	72058021	G	A	ENSMUST00000075258.12	1	ENSMUSG00000040543	missense	R/W	769	Pitpnm3	ENSMUST00000075258.12:c.2305C>T	ENSMUSP00000074737.6:p.Arg769Trp	H-2-Kb	8	9	3	VVWHWQDL	VVRHWQDL	NetMHCpan	164	1200.7	7.321	99	0.303	222.002	907.754	4.089	1202.31	270.69	1200.7	164	614.8086937	260.4593785	592.570463	183.5439188	M1	-0.571428571	-0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.289	99	0	0	NA	11qB4	chr11-69590981-82929860	4	4	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr11	51048574	51048574	C	A	ENSMUST00000073543.1	NA	ENSMUSG00000057890	missense	L/I	156	Olfr1375	ENSMUST00000073543.1:c.466C>A	ENSMUSP00000144756.1:p.Leu156Ile	H-2-Kb	8	4	8	VVWMCSAI	VVWMCSAL	NetMHCpan	187.8	52.2	0.278	248	0.29	304.068	53.059	0.174	38.05	298.58	52.2	187.8	83.70280268	542.9252	53.91877292	309.5565516	M1	1.885714286	1.885714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.287	248	0	0	NA	11qB1.3	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr11	57528173	57528173	A	T	ENSMUST00000020830.13	1	ENSMUSG00000020522	missense	D/V	53	Mfap3	ENSMUST00000020830.13:c.158A>T	ENSMUSP00000020830.7:p.Asp53Val	H-2-Kb	8	4	8	SAGSYSGV	SAGSYSGD	NetMHC	397.02	22519.42	56.721	110	0.218	446.118	12796.838	28.685	22519.42	397.02	29869.5	1113.8	3074.255792	459.9811133	2458.895091	432.2549746	M1	0.328571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.219	110	45	18	0.4	11qB1.3	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.994741892	sgMsh2	cell line
chr11	50237259	50237259	T	A	ENSMUST00000102772.3	1	ENSMUSG00000020377	missense	N/I	55	Ltc4s	ENSMUST00000102772.3:c.164A>T	ENSMUSP00000099833.3:p.Asn55Ile	H-2-Kb	8	11	1	ICSEYFPL	NCSEYFPL	SMMPMBEC	163.207	1944.196	11.912	48	0.188	262.12	3149.402	12.015	8197	536.95	3700.2	307.1	2598.603386	217.1400833	1944.195797	163.2074578	M1	0.271428571	0.371428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.192	48	1	0	0	11qB1.3	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.87210248	sgMsh2	cell line
chr10	130472110	130472110	CA	C	ENSMUST00000164227.3	5	ENSMUSG00000091511	FS	L/X	753	Vmn2r87	ENSMUST00000164227.3:c.2258del	ENSMUSP00000129215.2:p.Leu753TrpfsTer25	H-2-Kb	8	15	0	ASLWLSWL	NA	SMM	312.421	NA	NA	336	0.271	407.641	NA	NA	NA	717.62	NA	457.4	NA	312.4208431	NA	357.8821189	M1	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.272	336	0	0	NA	10qD3	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	sgMsh2	cell line
chr11	69421776	69421776	G	A	ENSMUST00000108659.1	5	ENSMUSG00000005237	missense	T/I	4321	Dnah2	ENSMUST00000108659.1:c.12962C>T	ENSMUSP00000104299.1:p.Thr4321Ile	H-2-Kb	8	7	5	FTFPIGFL	FTFPTGFL	NetMHCpan	171.4	290.1	1.693	41	0.317	310.633	287.844	0.927	911.4	769.54	290.1	171.4	255.1173529	312.4208431	285.5880296	308.8445912	M1	1.6	1.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.325	41	1	0	0	11qB3	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr10	130472110	130472110	CA	C	ENSMUST00000164227.3	5	ENSMUSG00000091511	FS	L/X	753	Vmn2r87	ENSMUST00000164227.3:c.2258del	ENSMUSP00000129215.2:p.Leu753TrpfsTer25	H-2-Kb	8	19	0	LSWLGTFL	NA	SMMPMBEC	307.426	NA	NA	336	0.271	420.694	NA	NA	NA	1101.66	NA	318.1	NA	523.2870654	NA	307.4255792	M1	1.085714286	1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.272	336	0	0	NA	10qD3	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	sgMsh2	cell line
chr11	34688463	34688463	A	T	ENSMUST00000093193.11	1	ENSMUSG00000020143	missense	L/M	708	Dock2	ENSMUST00000093193.11:c.2122T>A	ENSMUSP00000090884.5:p.Leu708Met	H-2-Kb	9	11	1	MAYKKLMTV	LAYKKLMTV	NetMHCpan	53.3	93.4	1.752	175	0.257	111.459	136.253	1.222	92.9	63.29	93.4	53.3	179.1059444	159.628341	191.9773533	191.9773533	M1	0.014285714	0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.26	175	0	0	NA	11qA4	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr10	129626025	129626025	A	G	ENSMUST00000204979.2	2	ENSMUSG00000095002	missense	L/P	12	Olfr798	ENSMUST00000204979.2:c.35T>C	ENSMUSP00000144716.1:p.Leu12Pro	H-2-Kb	9	4	8	TSVSEFIPL	TSVSEFILL	NetMHC	66.41	157	2.364	95	0.305	133.399	221.183	1.658	157	66.41	211.1	85.2	231.2650474	181.5975563	301.4740949	216.3963843	M1	1.342857143	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.335	95	0	0	NA	10qD3	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	sgMsh2	cell line
chr11	58720856	58720856	C	T	ENSMUST00000214728.1	5	ENSMUSG00000108265	missense	S/N	64	Olfr318	ENSMUST00000214728.1:c.191G>A	ENSMUSP00000149053.1:p.Ser64Asn	H-2-Kb	9	5	7	PMYFFLNQL	PMYFFLSQL	SMM	19.016	16.6	0.873	315	0.035	59.229	39.301	0.664	65.82	93.15	57.6	113.7	16.60007308	19.01559854	21.00148478	25.30754397	M1	0.7	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.037	315	0	0	NA	11qB1.3	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.168061415	sgMsh2	cell line
chr11	69421776	69421776	G	A	ENSMUST00000108659.1	5	ENSMUSG00000005237	missense	T/I	4321	Dnah2	ENSMUST00000108659.1:c.12962C>T	ENSMUSP00000104299.1:p.Thr4321Ile	H-2-Kb	9	5	7	SGFTFPIGF	SGFTFPTGF	NetMHCpan	69.2	48.4	0.699	41	0.317	218.951	188.454	0.861	55.46	98.19	48.4	69.2	321.4474612	339.7113053	378.6604965	416.1500968	M1	1.457142857	1.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.325	41	1	0	0	11qB3	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr11	34688463	34688463	A	T	ENSMUST00000093193.11	1	ENSMUSG00000020143	missense	L/M	708	Dock2	ENSMUST00000093193.11:c.2122T>A	ENSMUSP00000090884.5:p.Leu708Met	H-2-Kb	9	3	9	IQQHFSATM	IQQHFSATL	NetMHC	108.3	43.99	0.406	175	0.257	432.806	302.966	0.7	43.99	108.3	87	183.1	518.9314595	682.5115418	629.8686601	853.5913393	M1	-0.242857143	-0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.26	175	0	0	NA	11qA4	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr11	67211360	67211360	C	A	ENSMUST00000124516.7	1	ENSMUSG00000056328	missense	R/S	826	Myh1	ENSMUST00000124516.7:c.2476C>A	ENSMUSP00000117569.1:p.Arg826Ser	H-2-Kb	9	6	6	IQYNVSAFM	IQYNVRAFM	NetMHC	125.35	144.71	1.154	217	0.212	385.659	420.869	1.091	144.71	125.35	131.9	140.2	830.0609824	631.1171763	697.02764	656.5230826	M1	0.728571429	0.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.219	217	0	0	NA	11qB3	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.994741892	sgMsh2	cell line
chr11	50237259	50237259	T	A	ENSMUST00000102772.3	1	ENSMUSG00000020377	missense	N/I	55	Ltc4s	ENSMUST00000102772.3:c.164A>T	ENSMUSP00000099833.3:p.Asn55Ile	H-2-Kb	9	10	2	VICSEYFPL	VNCSEYFPL	SMM	116.174	87.722	0.755	48	0.188	137.523	100.849	0.733	107.02	148.79	115.7	213.3	87.72229799	116.1742828	94.67820161	126.255411	M1	0.271428571	1.2	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.192	48	1	0	0	11qB1.3	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.87210248	sgMsh2	cell line
chr11	61546578	61546578	A	C	ENSMUST00000179936.7	1	ENSMUSG00000001036	missense	I/S	56	Epn2	ENSMUST00000179936.7:c.167T>G	ENSMUSP00000136950.1:p.Ile56Ser	H-2-Kb	9	6	6	VAFSESMSM	VAFSEIMSM	NetMHCpan	123.9	82.3	0.664	81	0.272	145.532	154.465	1.061	140.62	155.51	82.3	123.9	168.310031	135.5532704	254.8296748	263.7849417	M1	0.1	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.28	81	94	27	0.287234043	11qB2	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr11	78231811	78231811	GT	G	ENSMUST00000002121.4	1	ENSMUSG00000002052	FS	K/X	195	Supt6	ENSMUST00000002121.4:c.585del	ENSMUSP00000002121.4:p.Lys195AsnfsTer69	H-2-Kb	9	34	0	VWTLTMMNL	NA	NetMHC	164.95	NA	NA	149	0.315	361.68	NA	NA	NA	164.95	NA	440.8	NA	282.5595563	NA	561.3710342	M1	0.928571429	1.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.313	149	157	2	0.012738854	11qB5	chr11-69590981-82929860	4	4	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr11	78231811	78231811	GT	G	ENSMUST00000002121.4	1	ENSMUSG00000002052	FS	K/X	195	Supt6	ENSMUST00000002121.4:c.585del	ENSMUSP00000002121.4:p.Lys195AsnfsTer69	H-2-Kb	9	55	0	TMSTRMMRL	NA	NetMHC	228.1	NA	NA	149	0.315	272.039	NA	NA	NA	228.1	NA	293.9	NA	347.6241981	NA	250.1785091	M1	-0.414285714	-0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.313	149	157	2	0.012738854	11qB5	chr11-69590981-82929860	4	4	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr11	69944246	69944246	A	G	ENSMUST00000018710.12	1	ENSMUSG00000018566	missense	M/T	380	Slc2a4	ENSMUST00000018710.12:c.1139T>C	ENSMUSP00000018710.6:p.Met380Thr	H-2-Kb	9	11	1	TSYVSIVAI	MSYVSIVAI	NetMHCpan	173.5	137.8	0.794	41	0.341	288.038	313.641	1.089	235.44	232.32	137.8	173.5	391.8411118	385.5760057	405.7420321	343.7557727	M1	2.442857143	2.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.362	41	0	0	NA	11qB3	chr11-69590981-82929860	4	4	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr10	130472110	130472110	CA	C	ENSMUST00000164227.3	5	ENSMUSG00000091511	FS	L/X	753	Vmn2r87	ENSMUST00000164227.3:c.2258del	ENSMUSP00000129215.2:p.Leu753TrpfsTer25	H-2-Kb	9	9	3	GSWLWGASL	NA	NetMHCpan	270.2	NA	NA	336	0.271	374.862	NA	NA	NA	300.72	NA	270.2	NA	563.7804345	NA	449.0037829	M1	0.914285714	0.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.272	336	0	0	NA	10qD3	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	sgMsh2	cell line
chr11	51048574	51048574	C	A	ENSMUST00000073543.1	NA	ENSMUSG00000057890	missense	L/I	156	Olfr1375	ENSMUST00000073543.1:c.466C>A	ENSMUSP00000144756.1:p.Leu156Ile	H-2-Kb	9	11	1	IISLMHTLL	LISLMHTLL	NetMHCpan	293.7	1169	3.98	248	0.29	394.034	1006.41	2.554	1480.07	359.41	1169	293.7	837.7414421	428.6570788	843.82036	431.7675507	M1	1.228571429	1.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.287	248	0	0	NA	11qB1.3	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr11	51048574	51048574	C	A	ENSMUST00000073543.1	NA	ENSMUSG00000057890	missense	L/I	156	Olfr1375	ENSMUST00000073543.1:c.466C>A	ENSMUSP00000144756.1:p.Leu156Ile	H-2-Kb	9	4	8	VVWMCSAII	VVWMCSALI	NetMHC	394.75	138.82	0.352	248	0.29	461.509	296.958	0.643	138.82	394.75	352.1	642.1	294.5167504	461.4344339	299.3987618	461.5832068	M1	1.928571429	1.928571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.287	248	0	0	NA	11qB1.3	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr11	58757857	58757857	G	A	ENSMUST00000215071.1	5	ENSMUSG00000107677	missense	S/N	64	Olfr316	ENSMUST00000215071.1:c.191G>A	ENSMUSP00000151136.1:p.Ser64Asn	H-2-Kb	9	5	7	PMYFLLNQL	PMYFLLSQL	SMM	69.841	60.969	0.873	444	0.088	256.406	183.625	0.716	298.82	430.35	478.1	884.5	60.9691303	69.84092778	68.43054518	82.46126636	M1	0.842857143	0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.079	444	0	0	NA	11qB1.3	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.358833833	sgMsh2	cell line
chr10	130472110	130472110	CA	C	ENSMUST00000164227.3	5	ENSMUSG00000091511	FS	L/X	753	Vmn2r87	ENSMUST00000164227.3:c.2258del	ENSMUSP00000129215.2:p.Leu753TrpfsTer25	H-2-Kb	9	17	0	LWLSWLGTF	NA	SMM	245.533	NA	NA	336	0.271	456.634	NA	NA	NA	499.03	NA	2307.2	NA	245.5330734	NA	414.2380608	M1	1.085714286	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.272	336	0	0	NA	10qD3	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	sgMsh2	cell line
chr11	69421776	69421776	G	A	ENSMUST00000108659.1	5	ENSMUSG00000005237	missense	T/I	4321	Dnah2	ENSMUST00000108659.1:c.12962C>T	ENSMUSP00000104299.1:p.Thr4321Ile	H-2-Kb	10	5	7	SGFTFPIGFL	SGFTFPTGFL	NetMHCpan	63.6	53.8	0.846	41	0.317	481.331	442.536	0.919	112.64	190.23	53.8	63.6	925.4010757	929.672533	772.4315424	772.4315424	M1	1.6	1.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.325	41	1	0	0	11qB3	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr11	95969851	95969851	T	G	ENSMUST00000013559.2	1	ENSMUSG00000013415	missense	S/R	359	Igf2bp1	ENSMUST00000013559.2:c.1075A>C	ENSMUSP00000013559.2:p.Ser359Arg	H-2-Db	9	8	4	AAMRLQSHL	AAMSLQSHL	SMM	336.217	330.842	0.984	102	0.235	466.447	489.283	1.049	583.59	561.66	681.7	531.5	330.8415143	336.2172565	394.9753567	401.39319	M1	-0.357142857	0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.231	102	48	8	0.166666667	11qD	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr11	110158302	110158302	T	TA	ENSMUST00000044850.3	1	ENSMUSG00000041797	FS	-/X	226-227	Abca9	ENSMUST00000044850.3:c.678dup	ENSMUSP00000036338.3:p.Ile227TyrfsTer140	H-2-Kb	8	114	0	VSYWLGYL	NA	NetMHC	3.31	NA	NA	96	0.188	5.817	NA	NA	NA	3.31	NA	5.3	NA	6.334903447	NA	7.477217263	M1	0.414285714	0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.184	96	0	0	NA	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.835764877	sgMsh2	cell line
chr12	32848661	32848661	CA	C	ENSMUST00000020886.8	1	ENSMUSG00000020572	FS	S/X	425	Nampt	ENSMUST00000020886.8:c.1280del	ENSMUSP00000020886.7:p.Lys427ArgfsTer41	H-2-Kb	8	43	0	FSIRFSRM	NA	NetMHC	5.62	NA	NA	131	0.122	18.487	NA	NA	NA	5.62	NA	13	NA	25.86663888	NA	23.97397234	M1	-0.2	-0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.122	131	430	28	0.065116279	12qA3	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.554148451	sgMsh2	cell line
chr12	17175107	17175107	T	C	ENSMUST00000170580.2	NA	ENSMUSG00000051726	missense	Q/R	371	Kcnf1	ENSMUST00000170580.2:c.1112A>G	ENSMUSP00000131480.1:p.Gln371Arg	H-2-Kb	8	11	1	RSFWWAII	QSFWWAII	NetMHCpan	47	94.9	2.019	203	0.153	147.142	222.304	1.511	154.38	132.2	94.9	47	290.2284617	178.5418375	338.6413603	162.0839455	M1	1.571428571	1.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.137	203	5	1	0.2	12qA1.1	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.622281457	sgMsh2	cell line
chr12	24955384	24955384	T	C	ENSMUST00000110942.10	1	ENSMUSG00000020646	missense	V/A	386	Mboat2	ENSMUST00000110942.10:c.1157T>C	ENSMUSP00000106567.3:p.Val386Ala	H-2-Kb	8	5	7	LTFLTGAL	LTFLTGVL	SMMPMBEC	126.398	284.276	2.249	246	0.146	148.313	332.574	2.242	970.17	184.97	290.4	137.5	374.7485835	159.1255801	284.2758718	126.3979412	M1	1.485714286	1.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.153	246	153	32	0.209150327	12qA1.3	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.694956664	sgMsh2	cell line
chr11	98157518	98157518	C	A	ENSMUST00000107545.8	1	ENSMUSG00000018160	missense	Q/H	817	Med1	ENSMUST00000107545.8:c.2451G>T	ENSMUSP00000103169.2:p.Gln817His	H-2-Kb	8	7	5	SGHSHSAL	SGHSQSAL	SMM	171.293	599.432	3.499	115	0.209	215.179	1628.022	7.566	2401.49	231.41	3726.4	792.8	599.4321055	171.2931516	854.5549615	198.9481935	M1	-0.4	-0.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.206	115	84	24	0.285714286	11qD	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.935693286	sgMsh2	cell line
chr11	110158302	110158302	T	TA	ENSMUST00000044850.3	1	ENSMUSG00000041797	FS	-/X	226-227	Abca9	ENSMUST00000044850.3:c.678dup	ENSMUSP00000036338.3:p.Ile227TyrfsTer140	H-2-Kb	8	17	0	YFLLFTYI	NA	SMM	210.737	NA	NA	96	0.188	342.228	NA	NA	NA	471.77	NA	1021.9	NA	210.7366151	NA	212.686537	M1	2.242857143	2.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.184	96	0	0	NA	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.835764877	sgMsh2	cell line
chr11	110158302	110158302	T	TA	ENSMUST00000044850.3	1	ENSMUSG00000041797	FS	-/X	226-227	Abca9	ENSMUST00000044850.3:c.678dup	ENSMUSP00000036338.3:p.Ile227TyrfsTer140	H-2-Kb	8	8	5	TDFFYFLL	TDFFIFFC	SMMPMBEC	49.061	12756.749	260.016	96	0.188	73.637	14347.604	194.843	19893.09	528.74	14804	97.3	13891.20754	49.97352678	12756.74869	49.06140712	M1	1.6	1.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.184	96	0	0	NA	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.835764877	sgMsh2	cell line
chr11	110158302	110158302	T	TA	ENSMUST00000044850.3	1	ENSMUSG00000041797	FS	-/X	226-227	Abca9	ENSMUST00000044850.3:c.678dup	ENSMUSP00000036338.3:p.Ile227TyrfsTer140	H-2-Kb	8	7	6	ATDFFYFL	ATDFFIFF	SMM	109.079	2527.784	23.174	96	0.188	144.17	2322.439	16.109	5760.3	597.4	1689.7	163.1	2527.784229	109.0787117	2117.093311	125.2391179	M1	0.957142857	0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.184	96	0	0	NA	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.835764877	sgMsh2	cell line
chr12	54685943	54685943	TG	T	ENSMUST00000161592.7	1	ENSMUSG00000054302	FS	H/X	127	Eapp	ENSMUST00000161592.7:c.381del	ENSMUSP00000123698.1:p.His127GlnfsTer52	H-2-Kb	8	53	0	SLFQTVML	NA	SMMPMBEC	306.719	NA	NA	155	0.316	372.068	NA	NA	NA	617.01	NA	379.6	NA	364.5356443	NA	306.71852	M1	1.757142857	1.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.333	155	267	82	0.307116105	12qC1	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr11	117772845	117772845	T	C	ENSMUST00000026659.9	1	ENSMUSG00000025572	missense	I/V	514	Tmc6	ENSMUST00000026659.9:c.1540A>G	ENSMUSP00000026659.3:p.Ile514Val	H-2-Kb	8	10	2	LVLKMAVL	LILKMAVL	SMMPMBEC	395.13	281.67	0.713	72	0.292	457.257	401.56	0.878	565.93	825.08	490.7	423.9	312.4208431	490.6140712	281.6696149	395.1299959	M1	2.257142857	2.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.238	72	19	3	0.157894737	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr12	31708932	31708932	A	G	ENSMUST00000236002.1	NA	ENSMUSG00000044067	missense	I/T	397	Gpr22	ENSMUST00000236002.1:c.1190T>C	ENSMUSP00000158030.1:p.Ile397Thr	H-2-Kb	8	8	4	GTTTFHPL	GTTIFHPL	SMMPMBEC	181.443	200.789	1.107	350	0.131	344.511	294.142	0.854	1035.85	893.41	338.4	454.2	249.8848923	234.8226582	200.7890385	181.4429089	M1	-0.042857143	-0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.134	350	0	0	NA	12qA3	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.608654856	sgMsh2	cell line
chr11	110158302	110158302	T	TA	ENSMUST00000044850.3	1	ENSMUSG00000041797	FS	-/X	226-227	Abca9	ENSMUST00000044850.3:c.678dup	ENSMUSP00000036338.3:p.Ile227TyrfsTer140	H-2-Kb	9	6	7	VATDFFYFL	VATDFFIFF	NetMHCpan	19.8	177.7	8.975	96	0.188	55.872	174.795	3.128	300.65	27	177.7	19.8	142.2689086	84.74420308	171.8897579	113.5664369	M1	0.957142857	0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.184	96	0	0	NA	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.835764877	sgMsh2	cell line
chr12	31709410	31709410	T	C	ENSMUST00000236002.1	NA	ENSMUSG00000044067	missense	S/G	238	Gpr22	ENSMUST00000236002.1:c.712A>G	ENSMUSP00000158030.1:p.Ser238Gly	H-2-Kb	9	9	3	STGEYYTEL	STSEYYTEL	NetMHC	37.25	32.97	0.885	279	0.197	75.815	105.246	1.388	32.97	37.25	31.7	45.4	181.1798935	108.9205937	177.521108	106.2306894	M1	-0.985714286	-0.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.202	279	0	0	NA	12qA3	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.917524484	sgMsh2	cell line
chr11	110158302	110158302	T	TA	ENSMUST00000044850.3	1	ENSMUSG00000041797	FS	-/X	226-227	Abca9	ENSMUST00000044850.3:c.678dup	ENSMUSP00000036338.3:p.Ile227TyrfsTer140	H-2-Kb	9	118	0	LGYLHPYRL	NA	NetMHCpan	27.7	NA	NA	96	0.188	108.333	NA	NA	NA	56.3	NA	27.7	NA	160.3651519	NA	178.7516256	M1	-0.614285714	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.184	96	0	0	NA	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.835764877	sgMsh2	cell line
chr11	120792493	120792493	GT	G	ENSMUST00000167023.7	1	ENSMUSG00000025155	FS	N/X	235	Dus1l	ENSMUST00000167023.7:c.704del	ENSMUSP00000132516.1:p.Asn235ThrfsTer61	H-2-Kb	9	41	0	VHYRMSGPI	NA	NetMHC	63.43	NA	NA	50	0.18	132.965	NA	NA	NA	63.43	NA	126.9	NA	139.0304729	NA	166.8207233	M1	-0.314285714	-0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.212	50	48	0	0	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.962946489	sgMsh2	cell line
chr11	120134832	120134832	A	G	ENSMUST00000103018.10	1	ENSMUSG00000061306	missense	M/T	226	Slc38a10	ENSMUST00000103018.10:c.677T>C	ENSMUSP00000099307.4:p.Met226Thr	H-2-Kb	9	11	1	TSSIFASSL	MSSIFASSL	NetMHCpan	80.7	63.8	0.791	104	0.26	321.872	325.304	1.011	80.3	100.18	63.8	80.7	570.3087043	561.1900987	641.5787927	543.5631415	M1	1.5	1.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.279	104	47	16	0.340425532	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr12	32848661	32848661	CA	C	ENSMUST00000020886.8	1	ENSMUSG00000020572	FS	S/X	425	Nampt	ENSMUST00000020886.8:c.1280del	ENSMUSP00000020886.7:p.Lys427ArgfsTer41	H-2-Kb	9	42	0	IFSIRFSRM	NA	NetMHC	106.03	NA	NA	131	0.122	163.493	NA	NA	NA	106.03	NA	225	NA	180.3474475	NA	146.6391721	M1	-0.2	1.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.122	131	430	28	0.065116279	12qA3	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.554148451	sgMsh2	cell line
chr12	31547124	31547124	T	C	ENSMUST00000001253.7	1	ENSMUSG00000020651	missense	N/S	248	Slc26a4	ENSMUST00000001253.7:c.743A>G	ENSMUSP00000001253.7:p.Asn248Ser	H-2-Kb	9	5	7	VSTKNYSGI	VSTKNYNGI	NetMHC	120.76	277.9	2.301	182	0.132	269.151	316.632	1.176	277.9	120.76	586.2	300.6	296.558243	258.8868552	336.7053368	279.4151821	M1	-0.871428571	-0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.133	182	1	0	0	12qA2	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.604112656	sgMsh2	cell line
chr12	32848661	32848661	CA	C	ENSMUST00000020886.8	1	ENSMUSG00000020572	FS	S/X	425	Nampt	ENSMUST00000020886.8:c.1280del	ENSMUSP00000020886.7:p.Lys427ArgfsTer41	H-2-Kb	9	39	0	MAMIFSIRF	NA	NetMHC	133.27	NA	NA	131	0.122	195.787	NA	NA	NA	133.27	NA	206.6	NA	184.9737069	NA	248.4562923	M1	1.6	2.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.122	131	430	28	0.065116279	12qA3	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.554148451	sgMsh2	cell line
chr11	116047690	116047690	T	C	ENSMUST00000021116.11	1	ENSMUSG00000020770	missense	F/L	40	Unk	ENSMUST00000021116.11:c.118T>C	ENSMUSP00000021116.5:p.Phe40Leu	H-2-Kb	9	3	9	QHYTYLKEL	QHYTYLKEF	NetMHC	157.48	600.28	3.812	114	0.167	176.351	480.118	2.723	600.28	157.48	601.2	194.9	266.1399065	157.8010905	359.9564831	208.0894201	M1	-0.442857143	-0.442857143	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.19	114	20	3	0.15	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.863018079	sgMsh2	cell line
chr11	95969851	95969851	T	G	ENSMUST00000013559.2	1	ENSMUSG00000013415	missense	S/R	359	Igf2bp1	ENSMUST00000013559.2:c.1075A>C	ENSMUSP00000013559.2:p.Ser359Arg	H-2-Kb	9	8	4	AAMRLQSHL	AAMSLQSHL	NetMHC	159.08	222.94	1.401	102	0.235	409.595	316.523	0.773	222.94	159.08	226.5	212.3	406.5462879	606.8900259	544.816184	635.696763	M1	-0.357142857	0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.231	102	48	8	0.166666667	11qD	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr11	120792493	120792493	GT	G	ENSMUST00000167023.7	1	ENSMUSG00000025155	FS	N/X	235	Dus1l	ENSMUST00000167023.7:c.704del	ENSMUSP00000132516.1:p.Asn235ThrfsTer61	H-2-Kb	9	56	0	TRYRYISNF	NA	NetMHC	190.62	NA	NA	50	0.18	243.391	NA	NA	NA	190.62	NA	226.7	NA	260.0818226	NA	263.1782532	M1	-0.585714286	-0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.212	50	48	0	0	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.962946489	sgMsh2	cell line
chr12	55707969	55707969	A	G	ENSMUST00000085385.6	1	ENSMUSG00000021027	missense	L/S	1179	Ralgapa1	ENSMUST00000085385.6:c.3536T>C	ENSMUSP00000082503.5:p.Leu1179Ser	H-2-Kb	9	4	8	YNIMHCGSL	YNIMHCGLL	NetMHCpan	97.8	114.6	1.172	166	0.139	248.131	188.429	0.759	147.64	214.91	114.6	97.8	277.4022632	379.4110717	229.2186762	281.3519957	M1	1.185714286	1.185714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.161	166	75	8	0.106666667	12qC1	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.731294267	sgMsh2	cell line
chr11	110158302	110158302	T	TA	ENSMUST00000044850.3	1	ENSMUSG00000041797	FS	-/X	226-227	Abca9	ENSMUST00000044850.3:c.678dup	ENSMUSP00000036338.3:p.Ile227TyrfsTer140	H-2-Kb	9	7	6	ATDFFYFLL	ATDFFIFFC	SMM	120.534	11145.768	92.47	96	0.188	148.653	11782.909	79.265	12420.05	230.73	14181.4	165.1	11145.76803	120.5341196	7555.270188	132.2056452	M1	1.6	1.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.184	96	0	0	NA	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.835764877	sgMsh2	cell line
chr12	24955384	24955384	T	C	ENSMUST00000110942.10	1	ENSMUSG00000020646	missense	V/A	386	Mboat2	ENSMUST00000110942.10:c.1157T>C	ENSMUSP00000106567.3:p.Val386Ala	H-2-Kb	9	5	7	LTFLTGALM	LTFLTGVLM	NetMHC	354.25	977.61	2.76	246	0.146	486.696	929.583	1.91	977.61	354.25	1440.3	432.5	780.0276543	540.8913049	881.5561915	650.5040428	M1	1.857142857	1.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.153	246	153	32	0.209150327	12qA1.3	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.694956664	sgMsh2	cell line
chr11	110158302	110158302	T	TA	ENSMUST00000044850.3	1	ENSMUSG00000041797	FS	-/X	226-227	Abca9	ENSMUST00000044850.3:c.678dup	ENSMUSP00000036338.3:p.Ile227TyrfsTer140	H-2-Kb	9	12	1	YFLLCYFLL	NA	SMM	188.847	NA	NA	96	0.188	300.564	NA	NA	NA	354.95	NA	3495.6	NA	188.8469608	NA	246.1784313	M1	2.742857143	2.742857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.184	96	0	0	NA	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.835764877	sgMsh2	cell line
chr11	98029849	98029849	A	G	ENSMUST00000017548.6	1	ENSMUSG00000017404	missense	K/R	144	Rpl19	ENSMUST00000017548.6:c.431A>G	ENSMUSP00000017548.6:p.Lys144Arg	H-2-Kb	9	4	8	ILMEHIHRL	ILMEHIHKL	NetMHCpan	116.2	215.6	1.855	105	0.2	491.725	943.052	1.918	1087.65	454.7	215.6	116.2	1230.580418	674.6988967	798.4541822	528.7495369	M1	-0.6	0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.213	105	12	5	0.416666667	11qD	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.967488689	sgMsh2	cell line
chr12	51999859	51999859	T	G	ENSMUST00000021339.7	1	ENSMUSG00000020956	missense	N/H	66	Dtd2	ENSMUST00000021339.7:c.196A>C	ENSMUSP00000021339.7:p.Asn66His	H-2-Kb	9	6	6	VNTLLHVKL	VNTLLNVKL	NetMHCpan	212.6	1257.5	5.915	92	0.217	402.088	1117.492	2.779	1647.25	460.42	1257.5	212.6	977.4847712	462.4981501	708.3534281	343.7557727	M1	1.114285714	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.222	92	107	13	0.121495327	12qC1	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr11	102061618	102061618	G	A	ENSMUST00000017458.10	1	ENSMUSG00000017314	missense	A/V	343	Mpp2	ENSMUST00000017458.10:c.1028C>T	ENSMUSP00000017458.3:p.Ala343Val	H-2-Kb	9	5	7	LIYEEVVRM	LIYEEVARM	NetMHCpan	384	183	0.477	33	0.455	422.457	242.216	0.573	185.13	506.32	183	384	299.3022626	431.6283877	304.9650004	413.2853397	M1	-0.357142857	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.469	33	16	2	0.125	11qD	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr11	110158302	110158302	T	TA	ENSMUST00000044850.3	1	ENSMUSG00000041797	FS	-/X	226-227	Abca9	ENSMUST00000044850.3:c.678dup	ENSMUSP00000036338.3:p.Ile227TyrfsTer140	H-2-Kb	9	16	0	CYFLLFTYI	NA	SMM	217.325	NA	NA	96	0.188	424.914	NA	NA	NA	542.75	NA	1310	NA	217.325156	NA	307.0789168	M1	2.242857143	2.242857143	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.184	96	0	0	NA	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.835764877	sgMsh2	cell line
chr11	110158302	110158302	T	TA	ENSMUST00000044850.3	1	ENSMUSG00000041797	FS	-/X	226-227	Abca9	ENSMUST00000044850.3:c.678dup	ENSMUSP00000036338.3:p.Ile227TyrfsTer140	H-2-Kb	9	10	3	FFYFLLCYF	NA	SMM	249.523	NA	NA	96	0.188	468.89	NA	NA	NA	607.98	NA	6288	NA	249.5226649	NA	329.7995054	M1	1.871428571	2.457142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.184	96	0	0	NA	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.835764877	sgMsh2	cell line
chr11	114987405	114987405	T	G	ENSMUST00000045075.2	1	ENSMUSG00000034641	missense	T/P	94	Cd300ld	ENSMUST00000045075.2:c.280A>C	ENSMUSP00000047022.2:p.Thr94Pro	H-2-Kb	9	4	8	RDFIFTVPM	RDFIFTVTM	SMMPMBEC	413.285	752.056	1.82	304	0.184	465.648	927.044	1.991	2749.39	1529.58	988.9	447	865.1870294	484.2950164	752.0556875	413.2853397	M1	1.985714286	1.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.181	304	0	0	NA	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.822138276	sgMsh2	cell line
chr12	69190025	69190025	GT	G	ENSMUST00000021356.5	1	ENSMUSG00000020973	FS	T/X	770	Dnaaf2	ENSMUST00000021356.5:c.2308del	ENSMUSP00000021356.5:p.Thr770LeufsTer12	H-2-Db	9	5	7	SSLLNKLWF	SSLLNKTVV	NetMHC	102.74	8.12	0.079	255	0.2	148.467	27.724	0.187	8.12	102.74	17.2	273.1	38.24899249	138.2356312	40.41755147	158.6974688	M1	0.842857143	0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.211	255	88	17	0.193181818	12qC2	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.958404288	sgMsh2	cell line
chr12	117974938	117974938	G	A	ENSMUST00000084806.6	1	ENSMUSG00000018581	missense	A/V	3265	Dnah11	ENSMUST00000084806.6:c.9794C>T	ENSMUSP00000081867.6:p.Ala3265Val	H-2-Kb	8	7	5	KSFAVAGL	KSFAAAGL	NetMHC	11.66	16.83	1.443	116	0.164	23.502	30.038	1.278	16.83	11.66	34.2	31.4	28.6906244	22.52890066	31.38629122	24.47597495	M1	1.885714286	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.179	116	0	0	NA	12qF2	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.813053875	sgMsh2	cell line
chr12	98275382	98275382	T	C	ENSMUST00000075072.5	1	ENSMUSG00000021886	missense	M/T	98	Gpr65	ENSMUST00000075072.5:c.293T>C	ENSMUSP00000074581.4:p.Met98Thr	H-2-Kb	8	6	6	VFFTYTNF	VFFTYMNF	SMMPMBEC	20.358	18.019	0.885	289	0.159	21.686	17.92	0.826	17.82	22.25	45.7	37.4	16.50973111	21.12224132	18.01938647	20.35822922	M1	0.314285714	0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.17	289	0	0	NA	12qE	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.772174071	sgMsh2	cell line
chr12	73285203	73285203	T	C	ENSMUST00000116420.3	1	ENSMUSG00000034442	missense	I/M	26	Trmt5	ENSMUST00000116420.3:c.78A>G	ENSMUSP00000112121.2:p.Ile26Met	H-2-Kb	8	10	2	SMLLFTLV	SILLFTLV	NetMHC	24.77	21.25	0.858	276	0.167	78.897	61.312	0.777	21.25	24.77	60	44.1	62.62388407	113.6946424	72.73442335	125.5278239	M1	2.8	2.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.16	276	67	11	0.164179104	12qC3	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.726752067	sgMsh2	cell line
chr12	108361203	108361203	T	C	ENSMUST00000021684.5	1	ENSMUSG00000021259	missense	F/L	425	Cyp46a1	ENSMUST00000021684.5:c.1273T>C	ENSMUSP00000021684.4:p.Phe425Leu	H-2-Kb	8	11	1	LTYFPFSL	FTYFPFSL	NetMHCpan	22.8	31.8	1.395	149	0.201	102.142	85.132	0.833	67.05	60.82	31.8	22.8	103.2143305	143.4630303	134.1961326	157.666708	M1	0.714285714	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.201	149	0	0	NA	12qF1	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.912982284	sgMsh2	cell line
chr12	75716177	75716177	C	A	ENSMUST00000021450.5	1	ENSMUSG00000021054	missense	G/V	410	Sgpp1	ENSMUST00000021450.5:c.1229G>T	ENSMUSP00000021450.4:p.Gly410Val	H-2-Kb	8	8	4	ITYVMVGF	ITYGMVGF	NetMHCpan	71.7	131.8	1.838	193	0.187	126.749	402.15	3.173	373.04	92.9	131.8	71.7	585.787365	231.6007706	431.2608157	160.597951	M1	1.528571429	1.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.19	193	51	8	0.156862745	12qC3	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.863018079	sgMsh2	cell line
chr12	84649145	84649145	C	T	ENSMUST00000167227.7	3	ENSMUSG00000071235	missense	A/V	223	Vrtn	ENSMUST00000167227.7:c.668C>T	ENSMUSP00000132050.1:p.Ala223Val	H-2-Kb	8	8	4	IMWVGQPL	IMWAGQPL	NetMHC	118.05	172.18	1.459	187	0.086	159.922	194.161	1.214	172.18	118.05	168.9	136.3	292.9139126	281.0217928	216.1424152	183.5439188	M1	0.5	0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.089	187	0	0	NA	12qD1	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.404255837	sgMsh2	cell line
chr12	69190025	69190025	GT	G	ENSMUST00000021356.5	1	ENSMUSG00000020973	FS	T/X	770	Dnaaf2	ENSMUST00000021356.5:c.2308del	ENSMUSP00000021356.5:p.Thr770LeufsTer12	H-2-Kb	8	14	0	KTYLTLTL	NA	NetMHCpan	98.5	NA	NA	255	0.2	204.29	NA	NA	NA	217.21	NA	98.5	NA	205.466016	NA	203.114066	M1	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.211	255	88	17	0.193181818	12qC2	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.958404288	sgMsh2	cell line
chr12	103104843	103104843	CA	C	ENSMUST00000101099.11	1	ENSMUSG00000021198	FS	Q/X	1330	Unc79	ENSMUST00000101099.11:c.3994del	ENSMUSP00000098659.5:p.Met1332CysfsTer59	H-2-Kb	8	32	0	ITLTWANT	NA	SMMPMBEC	112.912	NA	NA	256	0.172	220.203	NA	NA	NA	238.69	NA	942.4	NA	201.7158386	NA	112.911974	M1	-0.128571429	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.18	256	0	0	NA	12qE	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.817596075	sgMsh2	cell line
chr12	84136652	84136652	TG	T	ENSMUST00000140812.1	5	ENSMUSG00000042523	FS	G/X	62	Dnal1	ENSMUST00000140812.1:c.190del	ENSMUSP00000121131.1:p.Glu64ArgfsTer37	H-2-Kb	8	35	0	KTFLIPLL	NA	NetMHCpan	76.9	NA	NA	54	0.148	254.328	NA	NA	NA	240.9	NA	76.9	NA	318.2291802	NA	267.7564861	M1	2.342857143	2.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.155	54	0	0	NA	12qD1	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.704041065	sgMsh2	cell line
chr13	21133240	21133240	A	G	ENSMUST00000215804.1	5	ENSMUSG00000071522	missense	N/S	155	Olfr263	ENSMUST00000215804.1:c.464A>G	ENSMUSP00000149892.1:p.Asn155Ser	H-2-Kb	8	11	1	SSVILCTL	NSVILCTL	NetMHCpan	249.6	2098.7	8.408	378	0.312	274.698	1990.611	7.247	5833.61	253.09	2098.7	249.6	1882.521739	296.3056959	1865.262676	328.6548155	M1	2.471428571	2.471428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.321	378	0	0	NA	13qA2	chr13-3556297-119495179	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr12	72556654	72556654	T	A	ENSMUST00000044352.7	1	ENSMUSG00000034501	missense	S/T	489	Pcnx4	ENSMUST00000044352.7:c.1465T>A	ENSMUSP00000038916.6:p.Ser489Thr	H-2-Kb	8	10	2	VTIGFTRA	VSIGFTRA	SMMPMBEC	216.641	129.64	0.598	266	0.15	273.909	146.801	0.536	79.74	275.71	178.1	397.8	163.9607892	272.1071791	129.6402918	216.6406749	M1	0.4	0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.148	266	57	14	0.245614035	12qC3	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.672245662	sgMsh2	cell line
chr12	79261656	79261656	C	T	ENSMUST00000021547.7	1	ENSMUSG00000066440	missense	D/N	1705	Zfyve26	ENSMUST00000021547.7:c.5113G>A	ENSMUSP00000021547.6:p.Asp1705Asn	H-2-Kb	8	6	6	IGFTLNEV	IGFTLDEV	NetMHCpan	303.9	1187.3	3.907	150	0.12	375.252	970.102	2.585	1333.11	383.96	1187.3	303.9	696.209588	367.908651	752.9046857	382.5956254	M1	0.385714286	0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.134	150	37	6	0.162162162	12qC3	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.608654856	sgMsh2	cell line
chr12	98275382	98275382	T	C	ENSMUST00000075072.5	1	ENSMUSG00000021886	missense	M/T	98	Gpr65	ENSMUST00000075072.5:c.293T>C	ENSMUSP00000074581.4:p.Met98Thr	H-2-Kb	9	5	7	SVFFTYTNF	SVFFTYMNF	NetMHCpan	31	33.7	1.087	289	0.159	50.82	51.291	1.009	31.09	34.48	33.7	31	68.88267433	67.15989369	103.5738214	93.37916798	M1	0.314285714	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.17	289	0	0	NA	12qE	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.772174071	sgMsh2	cell line
chr12	84106461	84106461	G	T	ENSMUST00000056822.3	1	ENSMUSG00000043487	missense	G/V	159	Acot6	ENSMUST00000056822.3:c.476G>T	ENSMUSP00000056131.3:p.Gly159Val	H-2-Kb	9	11	1	VIIDLYGSI	GIIDLYGSI	NetMHCpan	77.9	1628.7	20.908	220	0.155	151.163	1429.64	9.458	2254.44	116.01	1628.7	77.9	1230.580418	226.5217979	933.7916798	186.3159349	M1	0.971428571	1.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.162	220	2	0	0	12qD1	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.735836468	sgMsh2	cell line
chr12	69190025	69190025	GT	G	ENSMUST00000021356.5	1	ENSMUSG00000020973	FS	T/X	770	Dnaaf2	ENSMUST00000021356.5:c.2308del	ENSMUSP00000021356.5:p.Thr770LeufsTer12	H-2-Kb	9	11	1	LWFKTYLTL	NA	SMM	52.736	NA	NA	255	0.2	87.638	NA	NA	NA	123.24	NA	86.1	NA	52.73634174	NA	89.17641311	M1	0.542857143	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.211	255	88	17	0.193181818	12qC2	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.958404288	sgMsh2	cell line
chr12	72556654	72556654	T	A	ENSMUST00000044352.7	1	ENSMUSG00000034501	missense	S/T	489	Pcnx4	ENSMUST00000044352.7:c.1465T>A	ENSMUSP00000038916.6:p.Ser489Thr	H-2-Kb	9	10	2	VTIGFTRAF	VSIGFTRAF	NetMHC	135.99	77.66	0.571	266	0.15	241.68	150.693	0.624	77.66	135.99	132.3	200.8	169.0869148	282.5595563	216.3963843	351.7628732	M1	0.9	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.148	266	57	14	0.245614035	12qC3	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.672245662	sgMsh2	cell line
chr12	118008803	118008803	A	G	ENSMUST00000084806.6	1	ENSMUSG00000018581	missense	F/S	2882	Dnah11	ENSMUST00000084806.6:c.8645T>C	ENSMUSP00000081867.6:p.Phe2882Ser	H-2-Kb	9	10	2	VSLLTDAHV	VFLLTDAHV	NetMHC	151.93	528.66	3.48	292	0.168	432.793	838.709	1.938	528.66	151.93	3378.6	1196.3	713.0336075	385.5760057	964.3840079	480.0096849	M1	0.885714286	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.174	292	0	0	NA	12qF2	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.790342873	sgMsh2	cell line
chr12	75716177	75716177	C	A	ENSMUST00000021450.5	1	ENSMUSG00000021054	missense	G/V	410	Sgpp1	ENSMUST00000021450.5:c.1229G>T	ENSMUSP00000021450.4:p.Gly410Val	H-2-Kb	9	11	1	VMVGFSITF	GMVGFSITF	SMM	93.349	507.119	5.433	193	0.187	171.911	1429.349	8.314	2096.18	191.68	3962.6	381.5	507.1191374	93.34907095	762.5178243	152.1423079	M1	1.771428571	2.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.19	193	51	8	0.156862745	12qC3	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.863018079	sgMsh2	cell line
chr12	116318844	116318844	A	C	ENSMUST00000100986.3	1	ENSMUSG00000021171	missense	E/A	138	Esyt2	ENSMUST00000100986.3:c.413A>C	ENSMUSP00000098548.2:p.Glu138Ala	H-2-Kb	9	5	7	FICQFIAKL	FICQFIEKL	NetMHC	274.03	1858.1	6.781	181	0.133	434.65	1868.7	4.299	1858.1	274.03	1879.3	413	1888.469608	820.5593529	1023.882217	456.2995075	M1	1.142857143	2.2	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.143	181	242	42	0.173553719	12qF2	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.64953466	sgMsh2	cell line
chr12	111678648	111678648	A	G	ENSMUST00000084947.9	1	ENSMUSG00000060950	missense	Y/C	6	Trmt61a	ENSMUST00000084947.9:c.17A>G	ENSMUSP00000082011.3:p.Tyr6Cys	H-2-Kb	9	1	6	MSFVACEEL	MSFVAYEEL	NetMHCpan	242.1	23.8	0.098	121	0.107	359.464	57.617	0.16	18.72	290.27	23.8	242.1	91.43448014	428.6570788	121.6886295	527.5334467	M1	1.157142857	1.271428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.122	121	16	2	0.125	12qF1	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.554148451	sgMsh2	cell line
chr12	98275382	98275382	T	C	ENSMUST00000075072.5	1	ENSMUSG00000021886	missense	M/T	98	Gpr65	ENSMUST00000075072.5:c.293T>C	ENSMUSP00000074581.4:p.Met98Thr	H-2-Kb	9	11	1	TNFYSSTAF	MNFYSSTAF	SMM	318.5	323.676	1.016	289	0.159	365.539	317.878	0.87	312.08	327.2	253.8	411.6	323.6756285	318.5004131	476.7053215	403.8778168	M1	0.542857143	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.17	289	0	0	NA	12qE	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.772174071	sgMsh2	cell line
chr13	22524943	22524943	A	G	ENSMUST00000227520.1	NA	ENSMUSG00000069289	missense	D/G	298	Vmn1r203	ENSMUST00000227520.1:c.893A>G	ENSMUSP00000153892.1:p.Asp298Gly	H-2-Kb	9	5	7	FVLIHRGGL	FVLIHRDGL	NetMHC	368.42	982.88	2.668	208	0.337	428.888	853.75	1.991	982.88	368.42	1406.4	658.5	724.6194716	440.6664633	721.5227015	417.1094219	M1	0.514285714	1.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.327	208	0	0	NA	13qA3.1	chr13-3556297-119495179	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr13	75878849	75878849	T	G	ENSMUST00000022078.11	1	ENSMUSG00000021589	missense	K/N	468	Rhobtb3	ENSMUST00000022078.11:c.1404A>C	ENSMUSP00000022078.5:p.Lys468Asn	H-2-Db	9	7	5	YGVSNETFL	YGVSKETFL	NetMHC	4.07	552.12	135.656	87	0.31	38.329	1708.94	44.587	552.12	4.07	1286.7	11.1	2131.179353	65.55714019	2236.505652	66.61468828	M1	0.328571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.32	87	107	41	0.38317757	13qC1	chr13-3556297-119495179	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr14	45614188	45614188	T	C	ENSMUST00000087320.12	1	ENSMUSG00000037697	missense	Y/C	511	Ddhd1	ENSMUST00000087320.12:c.1532A>G	ENSMUSP00000084577.5:p.Tyr511Cys	H-2-Kb	8	8	4	IMYCTSPL	IMYYTSPL	NetMHC	11.28	6.72	0.596	124	0.218	26.327	19.907	0.756	6.72	11.28	8.5	16.2	35.54184757	37.30267702	31.31410475	36.45356443	M1	0.542857143	0.642857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.243	124	35	11	0.314285714	14qC1	chr14-7422346-52852156	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr14	52036009	52036009	A	G	ENSMUST00000214071.1	5	ENSMUSG00000044286	missense	M/T	34	Olfr221	ENSMUST00000214071.1:c.101T>C	ENSMUSP00000150675.1:p.Met34Thr	H-2-Kb	8	10	2	VTYAITVL	VMYAITVL	NetMHCpan	26.2	23.8	0.908	66	0.333	60.149	92.464	1.537	54.39	47.73	23.8	26.2	137.3219621	75.63799359	130.5389154	72.56713881	M1	1.657142857	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.321	66	0	0	NA	14qC2	chr14-7422346-52852156	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr13	49627300	49627300	CA	C	ENSMUST00000021818.8	1	ENSMUSG00000021391	FS	F/X	172	Cenpp	ENSMUST00000021818.8:c.516del	ENSMUSP00000021818.7:p.Phe172LeufsTer47	H-2-Kb	8	15	0	VNIVRTHL	NA	NetMHC	64.31	NA	NA	66	0.273	136.441	NA	NA	NA	64.31	NA	69.3	NA	225.2890066	NA	203.5822922	M1	0.085714286	0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.272	66	16	1	0.0625	13qA5	chr13-3556297-119495179	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr13	61251720	61251720	GA	G	ENSMUST00000021891.4	1	ENSMUSG00000057446	FS	S/X	142	Cts8	ENSMUST00000021891.4:c.424del	ENSMUSP00000021891.3:p.Ser142LeufsTer6	H-2-Kb	8	6	6	SCWAFLRL	SCWAFSAA	SMMPMBEC	41.566	624.799	15.031	113	0.389	62.462	1317.047	21.086	2840.81	76.42	1590	62.3	1044.094962	62.62388407	624.7985313	41.56616909	M1	1.328571429	1.328571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.413	113	0	0	NA	13qB2	chr13-3556297-119495179	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr14	65975611	65975611	T	G	ENSMUST00000022616.13	1	ENSMUSG00000022037	missense	F/V	149	Clu	ENSMUST00000022616.13:c.445T>G	ENSMUSP00000022616.6:p.Phe149Val	H-2-Kb	8	8	4	SSPVYFWM	SSPFYFWM	NetMHCpan	60.6	40.4	0.667	91	0.297	147.752	201.93	1.367	223.25	116.55	40.4	60.6	180.6092545	178.9534189	234.2825811	206.8902384	M1	0.614285714	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.318	91	8003	2965	0.370486068	14qD1	chr14-53336808-123291781	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr14	30565598	30565598	A	C	ENSMUST00000022529.7	1	ENSMUSG00000021957	missense	D/A	183	Tkt	ENSMUST00000022529.7:c.548A>C	ENSMUSP00000022529.6:p.Asp183Ala	H-2-Kb	8	8	4	AIFAINRL	AIFDINRL	NetMHCpan	63.2	123.2	1.949	60	0.367	133.004	297.159	2.234	429.52	121.55	123.2	63.2	314.5864409	164.7175978	279.7306149	144.4574685	M1	1.342857143	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.383	60	743	233	0.31359354	14qB	chr14-7422346-52852156	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr13	54221267	54221267	TC	T	ENSMUST00000038101.3	1	ENSMUSG00000034987	FS	S/X	374	Hrh2	ENSMUST00000038101.3:c.1122del	ENSMUSP00000038170.3:p.Phe375SerfsTer53	H-2-Kb	8	26	0	SNHHYISV	NA	NetMHCpan	84.2	NA	NA	50	0.32	192.438	NA	NA	NA	148.97	NA	84.2	NA	235.9065504	NA	249.310173	M1	-0.471428571	-0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.319	50	0	0	NA	13qB1	chr13-3556297-119495179	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr14	123515710	123515710	C	A	ENSMUST00000000201.6	5	ENSMUSG00000000197	missense	R/I	288	Nalcn	ENSMUST00000000201.6:c.863G>T	ENSMUSP00000000201.5:p.Arg288Ile	H-2-Kb	8	6	6	VFLMYIAI	VFLMYRAI	SMM	80.675	70.265	0.871	90	0.3	117.27	70.672	0.603	62.95	152.93	94.9	239.3	70.26515361	80.67519058	71.07878574	81.60936526	M1	2.571428571	2.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.314	90	0	0	NA	14qE5	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	sgMsh2	cell line
chr14	66004100	66004100	T	A	ENSMUST00000059970.8	1	ENSMUSG00000034450	missense	H/L	103	Gulo	ENSMUST00000059970.8:c.308A>T	ENSMUSP00000060912.7:p.His103Leu	H-2-Kb	8	11	1	LGLALSNL	HGLALSNL	NetMHC	204.75	1235.08	6.032	66	0.318	230.187	887.134	3.854	1235.08	204.75	1375.1	217.3	539.1877292	243.0748352	512.5544401	245.8895091	M1	1.214285714	1.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.345	66	2	0	0	14qD1	chr14-53336808-123291781	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr15	3325898	3325898	C	A	ENSMUST00000069451.10	1	ENSMUSG00000055737	missense	R/M	301	Ghr	ENSMUST00000069451.10:c.902G>T	ENSMUSP00000069457.4:p.Arg301Met	H-2-Kb	8	4	8	VIFSKQQM	VIFSKQQR	NetMHCpan	188.2	12750.8	67.751	129	0.256	363.498	6741.575	18.546	9458.39	228.41	12750.8	188.2	2790.872523	500.8872766	4024.76011	498.5859086	M1	-0.357142857	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.259	129	13	0	0	15qA1	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr13	106953470	106953470	GA	G	ENSMUST00000022203.9	1	ENSMUSG00000021692	FS	K/X	234	Dimt1	ENSMUST00000022203.9:c.704del	ENSMUSP00000022203.8:p.Asn235ThrfsTer31	H-2-Kb	8	34	0	FTVQYRIL	NA	SMM	174.478	NA	NA	218	0.436	210.261	NA	NA	NA	261.72	NA	216	NA	174.4777291	NA	204.5219854	M1	0.357142857	0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.421	218	21	0	0	13qD2.1	chr13-3556297-119495179	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr14	108912776	108912776	T	C	ENSMUST00000100322.3	NA	ENSMUSG00000075478	missense	T/A	168	Slitrk1	ENSMUST00000100322.3:c.502A>G	ENSMUSP00000097897.2:p.Thr168Ala	H-2-Kb	8	9	3	ISALPANV	ISTLPANV	SMM	194.868	217.641	1.117	51	0.392	278.341	278.464	1	284.82	287.07	1132.8	711.5	217.6406428	194.8677632	272.1071791	269.6124854	M1	0.814285714	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.413	51	0	0	NA	14qE3	chr14-53336808-123291781	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr13	49627300	49627300	CA	C	ENSMUST00000021818.8	1	ENSMUSG00000021391	FS	F/X	172	Cenpp	ENSMUST00000021818.8:c.516del	ENSMUSP00000021818.7:p.Phe172LeufsTer47	H-2-Kb	8	8	4	LHFLWSGV	NA	NetMHCpan	276.5	NA	NA	66	0.273	348.386	NA	NA	NA	358.13	NA	276.5	NA	437.2602513	NA	338.6413603	M1	0.785714286	0.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.272	66	16	1	0.0625	13qA5	chr13-3556297-119495179	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr14	50360968	50360968	CT	C	ENSMUST00000185091.1	2	ENSMUSG00000051969	FS	L/X	137	Tlr11	ENSMUST00000185091.1:c.417del	ENSMUSP00000138814.1:p.Phe139LeufsTer9	H-2-Kb	8	8	6	LQYLFLII	LQYLFFDH	NetMHCpan	189.6	2553.5	13.468	200	0.27	389.759	3288.15	8.436	4022.8	567.16	2553.5	189.6	4273.069928	396.0408646	1376.385219	383.4775994	M1	2.085714286	2.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.266	200	0	0	NA	14qC1	chr14-7422346-52852156	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr14	37081422	37081422	T	C	ENSMUST00000022337.10	1	ENSMUSG00000021803	missense	T/A	566	Cdhr1	ENSMUST00000022337.10:c.1696A>G	ENSMUSP00000022337.9:p.Thr566Ala	H-2-Kb	8	5	7	LAEVFVAL	LAEVFVTL	SMMPMBEC	164.339	258.666	1.574	46	0.37	413.409	473.233	1.145	1279.74	711.73	522.1	571.7	424.3654321	255.1173529	258.6663888	164.3387578	M1	2.157142857	2.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.408	46	0	0	NA	14qB	chr14-7422346-52852156	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr13	49627300	49627300	CA	C	ENSMUST00000021818.8	1	ENSMUSG00000021391	FS	F/X	172	Cenpp	ENSMUST00000021818.8:c.516del	ENSMUSP00000021818.7:p.Phe172LeufsTer47	H-2-Kb	8	31	0	ILYTSWRV	NA	SMM	356.238	NA	NA	66	0.273	428.33	NA	NA	NA	1273.45	NA	493.8	NA	356.2377999	NA	362.8607551	M1	-0.028571429	0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.272	66	16	1	0.0625	13qA5	chr13-3556297-119495179	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr15	3325898	3325898	C	A	ENSMUST00000069451.10	1	ENSMUSG00000055737	missense	R/M	301	Ghr	ENSMUST00000069451.10:c.902G>T	ENSMUSP00000069457.4:p.Arg301Met	H-2-Kb	9	4	8	VIFSKQQMI	VIFSKQQRI	NetMHC	128.02	112.77	0.881	129	0.256	167.824	129.667	0.773	112.77	128.02	141	229.5	118.334124	147.6080354	149.021867	188.039895	M1	-0.357142857	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.259	129	13	0	0	15qA1	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr13	54221267	54221267	TC	T	ENSMUST00000038101.3	1	ENSMUSG00000034987	FS	S/X	374	Hrh2	ENSMUST00000038101.3:c.1122del	ENSMUSP00000038170.3:p.Phe375SerfsTer53	H-2-Kb	9	26	0	SNHHYISVL	NA	NetMHCpan	68.7	NA	NA	50	0.32	178.271	NA	NA	NA	141.14	NA	68.7	NA	229.67303	NA	215.4021332	M1	0.571428571	0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.319	50	0	0	NA	13qB1	chr13-3556297-119495179	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr14	57480701	57480701	T	C	ENSMUST00000122063.7	1	ENSMUSG00000040040	missense	M/T	577	Ift88	ENSMUST00000122063.7:c.1730T>C	ENSMUSP00000113768.1:p.Met577Thr	H-2-Kb	9	5	7	QAIEWLTQL	QAIEWLMQL	NetMHC	144.21	130.29	0.903	114	0.307	232.952	219.487	0.942	130.29	144.21	188.3	221.5	250.6744092	244.4049514	289.2344371	260.7654204	M1	0.5	0.5	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.32	114	19	11	0.578947368	14qC3	chr14-53336808-123291781	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr13	75878849	75878849	T	G	ENSMUST00000022078.11	1	ENSMUSG00000021589	missense	K/N	468	Rhobtb3	ENSMUST00000022078.11:c.1404A>C	ENSMUSP00000022078.5:p.Lys468Asn	H-2-Kb	9	10	2	SNETFLSFL	SKETFLSFL	NetMHC	152.36	2784.6	18.276	87	0.31	305.223	2383.314	7.808	2784.6	152.36	3434.7	227.4	1982.028979	421.8033261	1691.414308	383.0451784	M1	1.171428571	1.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.32	87	107	41	0.38317757	13qC1	chr13-3556297-119495179	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr14	30565598	30565598	A	C	ENSMUST00000022529.7	1	ENSMUSG00000021957	missense	D/A	183	Tkt	ENSMUST00000022529.7:c.548A>C	ENSMUSP00000022529.6:p.Asp183Ala	H-2-Kb	9	7	5	VAIFAINRL	VAIFDINRL	NetMHCpan	105.3	537.5	5.104	60	0.367	203.936	485.56	2.381	877.91	173.39	537.5	105.3	433.6206938	234.4822647	361.6179668	276.8534884	M1	1.342857143	2.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.383	60	743	233	0.31359354	14qB	chr14-7422346-52852156	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr14	56761852	56761852	A	C	ENSMUST00000022507.12	1	ENSMUSG00000021938	missense	L/V	316	Pspc1	ENSMUST00000022507.12:c.946T>G	ENSMUSP00000022507.5:p.Leu316Val	H-2-Kb	9	11	1	VMLMRQDLM	LMLMRQDLM	SMM	117.249	337.373	2.877	107	0.336	170.678	505.031	2.959	672.69	215.68	1505.6	463.1	337.3727491	117.2492302	325.2744865	125.6753201	M1	-0.014285714	0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.351	107	29	0	0	14qC3	chr14-53336808-123291781	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr14	123515710	123515710	C	A	ENSMUST00000000201.6	5	ENSMUSG00000000197	missense	R/I	288	Nalcn	ENSMUST00000000201.6:c.863G>T	ENSMUSP00000000201.5:p.Arg288Ile	H-2-Kb	9	5	7	WVFLMYIAI	WVFLMYRAI	SMM	126.506	178.694	1.413	90	0.3	190.437	187.572	0.985	117.77	251.38	308	1796.8	178.6940122	126.5056726	196.4490803	129.4941055	M1	2.571428571	2.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.314	90	0	0	NA	14qE5	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	sgMsh2	cell line
chr14	50360968	50360968	CT	C	ENSMUST00000185091.1	2	ENSMUSG00000051969	FS	L/X	137	Tlr11	ENSMUST00000185091.1:c.417del	ENSMUSP00000138814.1:p.Phe139LeufsTer9	H-2-Kb	9	8	6	LQYLFLIIM	LQYLFFDHH	SMM	108.921	557.327	5.117	200	0.27	221.413	1537.683	6.945	2518.04	289.63	4225.9	983.6	557.3268932	108.9205937	533.6419961	153.196908	M1	2.857142857	2.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.266	200	0	0	NA	14qC1	chr14-7422346-52852156	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr14	34594872	34594872	T	C	ENSMUST00000022331.2	1	ENSMUSG00000021799	missense	Y/C	320	Opn4	ENSMUST00000022331.2:c.959A>G	ENSMUSP00000022331.2:p.Tyr320Cys	H-2-Kb	9	6	6	VAFAGCSHI	VAFAGYSHI	NetMHCpan	125.5	15.8	0.126	63	0.397	316.575	52.299	0.165	26.39	294.11	15.8	125.5	87.5205423	410.3080144	78.20778752	339.0392667	M1	1.028571429	1.7	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.414	63	0	0	NA	14qB	chr14-7422346-52852156	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr14	29170631	29170631	A	T	ENSMUST00000022567.8	1	ENSMUSG00000021991	missense	F/Y	418	Cacna2d3	ENSMUST00000022567.8:c.1253T>A	ENSMUSP00000022567.7:p.Phe418Tyr	H-2-Kb	9	6	6	ANKGFYTQI	ANKGFFTQI	NetMHCpan	153.5	133	0.866	112	0.339	222.545	313.745	1.41	417.88	298.99	133	153.5	384.6892055	273.5961615	242.8007366	171.4944225	M1	-0.357142857	-0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.35	112	0	0	NA	14qA3	chr14-7422346-52852156	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr14	73216777	73216777	A	C	ENSMUST00000022701.6	1	ENSMUSG00000022105	missense	D/E	560	Rb1	ENSMUST00000022701.6:c.1680T>G	ENSMUSP00000022701.6:p.Asp560Glu	H-2-Kb	9	6	6	LAWLSESPL	LAWLSDSPL	SMM	279.325	421.803	1.51	107	0.327	304.073	461.452	1.518	501.1	305.28	720.4	410.1	421.8033261	279.3251239	407.6148523	302.8656361	M1	-6.34E-17	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.347	107	19	5	0.263157895	14qD3	chr14-53336808-123291781	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr14	50453867	50453867	G	T	ENSMUST00000214792.1	5	ENSMUSG00000095917	missense	A/S	272	Olfr740	ENSMUST00000214792.1:c.814G>T	ENSMUSP00000148916.1:p.Ala272Ser	H-2-Kb	9	11	1	SGMQKLVTL	AGMQKLVTL	NetMHCpan	247.6	429.1	1.733	162	0.253	423.556	718.749	1.697	707.62	313.47	429.1	247.6	968.523137	625.3310593	729.8775406	533.6419961	M1	0.8	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.263	162	0	0	NA	14qC1	chr14-7422346-52852156	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr14	37081422	37081422	T	C	ENSMUST00000022337.10	1	ENSMUSG00000021803	missense	T/A	566	Cdhr1	ENSMUST00000022337.10:c.1696A>G	ENSMUSP00000022337.9:p.Thr566Ala	H-2-Kb	9	5	7	LAEVFVALL	LAEVFVTLL	NetMHC	323.57	797.23	2.464	46	0.37	463.56	737.522	1.591	797.23	323.57	1213.4	625.1	677.8131653	507.1191374	571.8077009	420.0006862	M1	2.442857143	2.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.408	46	0	0	NA	14qB	chr14-7422346-52852156	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr13	75878849	75878849	T	G	ENSMUST00000022078.11	1	ENSMUSG00000021589	missense	K/N	468	Rhobtb3	ENSMUST00000022078.11:c.1404A>C	ENSMUSP00000022078.5:p.Lys468Asn	H-2-Kb	9	9	3	VSNETFLSF	VSKETFLSF	SMM	343.645	425.706	1.239	87	0.31	405.045	443.114	1.094	688.38	363.15	407.4	540.2	425.7062242	343.6449768	460.5215948	446.9407979	M1	0.128571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.32	87	107	41	0.38317757	13qC1	chr13-3556297-119495179	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr14	52036009	52036009	A	G	ENSMUST00000214071.1	5	ENSMUSG00000044286	missense	M/T	34	Olfr221	ENSMUST00000214071.1:c.101T>C	ENSMUSP00000150675.1:p.Met34Thr	H-2-Kb	9	6	6	VVFLVTYAI	VVFLVMYAI	NetMHC	404.46	257.9	0.638	66	0.333	474.826	410.59	0.865	257.9	404.46	656.7	462	397.2921646	487.6519891	423.8869047	600.1364431	M1	2.157142857	2.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.321	66	0	0	NA	14qC2	chr14-7422346-52852156	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr14	45614188	45614188	T	C	ENSMUST00000087320.12	1	ENSMUSG00000037697	missense	Y/C	511	Ddhd1	ENSMUST00000087320.12:c.1532A>G	ENSMUSP00000084577.5:p.Tyr511Cys	H-2-Kb	9	8	4	IMYCTSPLY	IMYYTSPLY	SMM	100.487	72.629	0.723	124	0.218	436.085	328.486	0.753	479.86	649.71	1452	1280.4	72.6289892	100.4870276	177.1128208	222.4590099	M1	0.085714286	0.642857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.243	124	35	11	0.314285714	14qC1	chr14-7422346-52852156	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr16	16673096	16673096	T	C	ENSMUST00000206365.2	3	ENSMUSG00000048101	missense	K/R	295	Olfr19	ENSMUST00000206365.2:c.884A>G	ENSMUSP00000145655.2:p.Lys295Arg	H-2-Db	9	6	6	YSLRNRDLM	YSLRNKDLM	NetMHC	3.3	4.46	1.352	102	0.206	5.853	8.806	1.505	4.46	3.3	5.9	4.6	11.71170164	7.105914866	14.27479894	9.496640546	M1	-0.928571429	-0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.217	102	0	0	NA	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.985657491	sgMsh2	cell line
chr15	75597834	75597834	A	G	ENSMUST00000023243.10	1	ENSMUSG00000022579	missense	T/A	133	Gpihbp1	ENSMUST00000023243.10:c.397A>G	ENSMUSP00000023243.4:p.Thr133Ala	H-2-Db	9	10	2	SALCNIPPW	STLCNIPPW	SMMPMBEC	43.709	249.787	5.715	93	0.269	85.973	425.163	4.945	1274.99	88.65	308.8	114.3	541.5268566	83.29520473	249.7870966	43.70891238	M1	0.457142857	0.957142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.272	93	0	0	NA	15qD3	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr16	3592590	3592590	A	G	ENSMUST00000216259.1	5	ENSMUSG00000051003	missense	S/G	65	Olfr161	ENSMUST00000216259.1:c.193A>G	ENSMUSP00000150825.1:p.Ser65Gly	H-2-Db	9	8	4	FFLGNLSFV	FFLSNLSFV	SMM	191.699	80.282	0.419	175	0.206	456.264	114.023	0.25	99.94	647.94	502	1445.2	80.28233585	191.6990674	128.1061561	264.5879126	M1	1.414285714	1.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.218	175	0	0	NA	16qA1	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	sgMsh2	cell line
chr15	83500100	83500100	A	C	ENSMUST00000016897.11	1	ENSMUSG00000022442	missense	F/V	109	Ttll1	ENSMUST00000016897.11:c.325T>G	ENSMUSP00000016897.4:p.Phe109Val	H-2-Kb	8	11	1	VVPVTYML	FVPVTYML	NetMHC	80.92	746.55	9.226	68	0.206	407.435	1764.727	4.331	746.55	80.92	1373	222.3	2156.453014	592.570463	2221.979255	627.6824703	M1	1.5	1.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.234	68	51	12	0.235294118	15qE1	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr15	99470788	99470788	TC	T	ENSMUST00000040313.5	1	ENSMUSG00000037525	FS	D/X	177	Bcdin3d	ENSMUST00000040313.5:c.529del	ENSMUSP00000041809.4:p.Asp177ThrfsTer63	H-2-Kb	8	16	0	SSWPTSPL	NA	NetMHC	82.2	NA	NA	66	0.242	102.864	NA	NA	NA	82.2	NA	97.4	NA	116.3429308	NA	108.3278191	M1	-0.371428571	-0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.246	66	13	1	0.076923077	15qF1	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr16	3592590	3592590	A	G	ENSMUST00000216259.1	5	ENSMUSG00000051003	missense	S/G	65	Olfr161	ENSMUST00000216259.1:c.193A>G	ENSMUSP00000150825.1:p.Ser65Gly	H-2-Kb	8	6	6	MYFFLGNL	MYFFLSNL	NetMHCpan	34	14.7	0.432	175	0.206	89.071	59.088	0.663	49.51	88.66	14.7	34	68.66572344	89.4828896	80.11982647	98.3422182	M1	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.218	175	0	0	NA	16qA1	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	sgMsh2	cell line
chr16	4092284	4092284	AG	A	ENSMUST00000023165.8	1	ENSMUSG00000022521	FS	P/X	1490	Crebbp	ENSMUST00000023165.8:c.4469del	ENSMUSP00000023165.6:p.Pro1490LeufsTer68	H-2-Kb	8	4	8	YIFHCHPL	YIFHCHPP	SMMPMBEC	72.068	1869.563	25.942	93	0.237	81.086	4663.167	57.509	15083.52	169.82	7276.4	77.5	2049.934573	84.67203545	1869.56255	72.06759014	M1	0.8	0.8	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.226	93	61	2	0.032786885	16qA1	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	sgMsh2	cell line
chr15	100190056	100190056	T	C	ENSMUST00000100203.9	1	ENSMUSG00000023026	missense	V/A	957	Dip2b	ENSMUST00000100203.9:c.2870T>C	ENSMUSP00000097777.3:p.Val957Ala	H-2-Kb	8	7	5	ASVMAGNL	ASVMVGNL	NetMHC	249.4	155.85	0.625	123	0.268	304.177	234.725	0.772	155.85	249.4	254.3	361	261.0597994	332.4604589	215.149331	275.892567	M1	1	1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.267	123	34	12	0.352941176	15qF1	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr15	82346154	82346154	AG	A	ENSMUST00000023086.14	1	ENSMUSG00000022452	FS	R/X	24	Smdt1	ENSMUST00000023086.14:c.75del	ENSMUSP00000023086.8:p.Arg26GlyfsTer36	H-2-Kb	8	36	0	SSLAAAPF	NA	NetMHC	289.68	NA	NA	49	0.265	412.027	NA	NA	NA	289.68	NA	391.8	NA	461.0414792	NA	432.2549746	M1	1.371428571	1.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.228	49	65	4	0.061538462	15qE1	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr15	76185668	76185668	G	A	ENSMUST00000073418.12	5	ENSMUSG00000022565	missense	R/W	1153	Plec	ENSMUST00000073418.12:c.3457C>T	ENSMUSP00000073124.6:p.Arg1153Trp	H-2-Kb	8	7	5	VHRLWLPL	VHRLRLPL	SMM	145.794	747.722	5.129	44	0.318	184.366	805.542	4.369	756.53	292.75	951.2	214.3	747.7217263	145.794117	854.5549615	154.4329616	M1	0.171428571	0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe	3	0.289	44	85	20	0.235294118	15qD3	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr15	55084094	55084094	A	G	ENSMUST00000023059.12	1	ENSMUSG00000022422	missense	V/A	230	Dscc1	ENSMUST00000023059.12:c.689T>C	ENSMUSP00000023059.6:p.Val230Ala	H-2-Kb	8	6	6	WSLDRAPL	WSLDRVPL	SMMPMBEC	220.668	636.414	2.884	62	0.242	309.984	790.887	2.551	1192.99	347.86	795.2	403.9	786.5747483	272.1071791	636.4144033	220.6683258	M1	-0.142857143	-0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.228	62	6	0	0	15qD1	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr16	3592523	3592523	GA	G	ENSMUST00000216259.1	5	ENSMUSG00000051003	FS	G/X	42	Olfr161	ENSMUST00000216259.1:c.128del	ENSMUSP00000150825.1:p.Asn43ThrfsTer46	H-2-Kb	8	47	0	LSLRYWPF	NA	NetMHCpan	130.4	NA	NA	120	0.175	210.41	NA	NA	NA	465.62	NA	130.4	NA	248.7367755	NA	172.0838049	M1	-0.357142857	-0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.184	120	0	0	NA	16qA1	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	sgMsh2	cell line
chr15	102107034	102107034	C	A	ENSMUST00000169627.8	1	ENSMUSG00000037003	missense	L/I	124	Tns2	ENSMUST00000169627.8:c.370C>A	ENSMUSP00000129146.1:p.Leu124Ile	H-2-Kb	8	4	8	RSFSLDPI	RSFSLDPL	SMMPMBEC	399.705	69.621	0.174	41	0.366	447.918	66.195	0.148	61.92	575.14	134.3	488.7	62.76824703	407.1364636	69.6209588	399.7053856	M1	0.628571429	0.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.381	41	12	2	0.166666667	15qF2	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr15	16823315	16823315	CA	C	ENSMUST00000228307.1	NA	ENSMUSG00000025370	FS	K/X	128	Cdh9	ENSMUST00000228307.1:c.383del	ENSMUSP00000154022.1:p.Lys128ArgfsTer3	H-2-Kb	9	4	8	SLYILRARL	SLYILRAKA	NetMHC	34.72	2987.65	86.05	113	0.327	138.433	2844.375	20.547	2987.65	34.72	2701.1	48.7	4386.417848	267.9847002	2662.257137	228.165512	M1	0.514285714	1.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.3	113	0	0	NA	15qA2	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr16	3592590	3592590	A	G	ENSMUST00000216259.1	5	ENSMUSG00000051003	missense	S/G	65	Olfr161	ENSMUST00000216259.1:c.193A>G	ENSMUSP00000150825.1:p.Ser65Gly	H-2-Kb	9	5	7	PMYFFLGNL	PMYFFLSNL	SMM	22.862	15.35	0.671	175	0.206	43.133	26.875	0.623	34.5	54.11	28.5	71.6	15.35005727	22.86177783	25.24933823	32.15511003	M1	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.218	175	0	0	NA	16qA1	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	sgMsh2	cell line
chr15	98126427	98126427	G	T	ENSMUST00000051226.7	1	ENSMUSG00000033065	missense	G/C	439	Pfkm	ENSMUST00000051226.7:c.1315G>T	ENSMUSP00000059801.6:p.Gly439Cys	H-2-Kb	9	7	5	VVHDCFEGL	VVHDGFEGL	NetMHC	110.43	431.59	3.908	124	0.25	228.926	428.227	1.871	431.59	110.43	423.6	235.2	439.6529586	227.0439846	424.864065	230.8075441	M1	-0.214285714	0.5	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	124	115	25	0.217391304	15qF1	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr16	20686853	20686853	A	G	ENSMUST00000115460.7	5	ENSMUSG00000045983	missense	I/V	1292	Eif4g1	ENSMUST00000115460.7:c.3874A>G	ENSMUSP00000111120.1:p.Ile1292Val	H-2-Kb	9	11	1	VAREHMGRL	IAREHMGRL	SMMPMBEC	106.967	141.661	1.324	69	0.217	116.472	149.63	1.285	127.43	113.79	157.6	170.6	175.4324789	119.1543769	141.6609011	106.9670454	M1	-1.485714286	-0.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.194	69	424	106	0.25	16qB1	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.881186881	sgMsh2	cell line
chr15	76715854	76715854	C	A	ENSMUST00000049956.4	1	ENSMUSG00000033707	missense	A/S	362	Lrrc24	ENSMUST00000049956.4:c.1084G>T	ENSMUSP00000061906.4:p.Ala362Ser	H-2-Kb	9	10	2	KSRVPFHLL	KARVPFHLL	NetMHC	220.18	419.14	1.904	94	0.266	326.475	464.375	1.422	419.14	220.18	451.1	259.3	477.6502397	393.6497682	885.62527	703.4771574	M1	0.757142857	0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.241	94	0	0	NA	15qD3	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr15	63824978	63824978	T	C	ENSMUST00000188691.1	1	ENSMUSG00000056293	missense	K/R	448	Gsdmc2	ENSMUST00000188691.1:c.1343A>G	ENSMUSP00000140487.1:p.Lys448Arg	H-2-Kb	9	4	8	STWDLEARM	STWDLEAKM	NetMHC	270.97	630.27	2.326	351	0.262	393.946	686.739	1.743	630.27	270.97	949.5	462.3	743.2073569	407.4834739	574.4470454	380.4083139	M1	-0.7	-0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.266	351	0	0	NA	15qD1	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr15	76622252	76622252	GT	G	ENSMUST00000078803.4	1	ENSMUSG00000115987	FS	N/X	216	Vps28	ENSMUST00000078803.4:c.647del	ENSMUSP00000077856.3:p.Asn216ThrfsTer?	H-2-Kb	9	5	7	SAYNAFTAS	SAYNAFNRF	SMM	204.226	61.96	0.303	121	0.223	329.815	52.55	0.159	43.14	281.84	34.5	452.4	61.95979897	204.225515	87.54876014	377.7896015	M1	0.014285714	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.231	121	83	3	0.036144578	15qD3	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr15	76185668	76185668	G	A	ENSMUST00000073418.12	5	ENSMUSG00000022565	missense	R/W	1153	Plec	ENSMUST00000073418.12:c.3457C>T	ENSMUSP00000073124.6:p.Arg1153Trp	H-2-Kb	9	6	6	TVHRLWLPL	TVHRLRLPL	NetMHCpan	140.4	473.4	3.372	44	0.318	302.662	666.334	2.202	585.79	318.08	473.4	140.4	790.8789199	332.7438214	746.8785726	287.2433612	M1	0.171428571	0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe	3	0.289	44	85	20	0.235294118	15qD3	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr16	3592523	3592523	GA	G	ENSMUST00000216259.1	5	ENSMUSG00000051003	FS	G/X	42	Olfr161	ENSMUST00000216259.1:c.128del	ENSMUSP00000150825.1:p.Asn43ThrfsTer46	H-2-Kb	9	39	0	WMYASPPPL	NA	NetMHCpan	187.9	NA	NA	120	0.175	209.738	NA	NA	NA	330.1	NA	187.9	NA	192.357888	NA	227.1171867	M1	-0.185714286	-0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.184	120	0	0	NA	16qA1	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	sgMsh2	cell line
chr16	66953325	66953325	A	C	ENSMUST00000128168.2	5	ENSMUSG00000064115	missense	L/V	4	Cadm2	ENSMUST00000128168.2:c.10T>G	ENSMUSP00000134554.1:p.Leu4Val	H-2-Db	9	2	3	FFVCNLSLV	FFLCNLSLV	SMM	212.628	112.362	0.528	72	0.264	366.157	205.398	0.561	212.84	383.52	712	1231.7	112.3621395	212.6277776	197.9566064	348.7947987	M1	2.028571429	2.028571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.274	72	0	0	NA	16qC2	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr16	59543197	59543197	AT	A	ENSMUST00000172910.2	5	ENSMUSG00000022723	FS	K/X	2441	Crybg3	ENSMUST00000172910.2:c.7323del	ENSMUSP00000156047.1:p.Lys2441AsnfsTer11	H-2-Db	9	7	5	AAEMNHCIL	NA	NetMHCpan	226	NA	NA	59	0.271	388.867	NA	NA	NA	644.6	NA	226	NA	423.2724481	NA	354.4622582	M1	0.357142857	0.357142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.288	59	6	0	0	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr17	28974308	28974308	CA	C	ENSMUST00000119274.2	1	ENSMUSG00000024006	FS	F/X	382	Stk38	ENSMUST00000119274.2:c.1146del	ENSMUSP00000113657.1:p.Phe382LeufsTer42	H-2-Kb	8	38	0	TSMNFQSL	NA	NetMHC	7.12	NA	NA	78	0.205	20.588	NA	NA	NA	7.12	NA	9.5	NA	35.46010359	NA	31.67670499	M1	-0.014285714	-0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2051	78	167	23	0.137724551	17qA3.3	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.931605306	sgMsh2	cell line
chr17	20993832	20993833	GA	AT	ENSMUST00000237195.1	NA	ENSMUSG00000045575	missense	F/Y	285	Vmn1r233	ENSMUST00000237195.1:c.854_855delinsAT	ENSMUSP00000158452.1:p.Phe285Tyr	H-2-Kb	8	7	5	SSLVYPTV	SSLVFPTV	NetMHC	13.54	10.29	0.76	152	0.25	42.037	33.876	0.806	10.29	13.54	22.8	28.9	44.95106648	55.17470248	51.72970479	63.49506908	M1	1.114285714	1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.264	152	0	0	NA	17qA3.2	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr17	37701005	37701005	AT	A	ENSMUST00000213732.1	5	ENSMUSG00000059964	FS	F/X	112	Olfr119	ENSMUST00000213732.1:c.339del	ENSMUSP00000150099.1:p.Phe113LeufsTer3	H-2-Kb	8	5	8	QMFFFTFL	QMFFFTFF	NetMHCpan	9.9	98.7	9.97	417	0.228	18.421	250.269	13.586	184.5	17.4	98.7	9.9	316.0385059	19.44195797	349.7357273	27.84453695	M1	2.314285714	2.314285714	TRUE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2278	417	0	0	NA	17qB1	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr17	38082114	38082114	A	G	ENSMUST00000216523.1	5	ENSMUSG00000043312	missense	M/T	288	Olfr131	ENSMUST00000216523.1:c.863T>C	ENSMUSP00000150562.1:p.Met288Thr	H-2-Kb	8	8	4	ITPTLNPL	ITPMLNPL	NetMHC	80.3	53.48	0.666	151	0.205	136.287	121.388	0.891	53.48	80.3	100.3	182.4	146.4670721	126.107234	142.4754378	146.4670721	M1	-0.071428571	0.028571429	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.224	151	0	0	NA	17qB1	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr16	90767027	90767027	CA	C	ENSMUST00000140920.1	5	ENSMUSG00000039929	FS	L/X	1616	Urb1	ENSMUST00000140920.1:c.4847del	ENSMUSP00000114717.1:p.Leu1616ArgfsTer37	H-2-Kb	8	35	0	MTPAFFSI	NA	NetMHCpan	58.1	NA	NA	64	0.328	155.093	NA	NA	NA	108.47	NA	58.1	NA	201.7158386	NA	223.738128	M1	1.257142857	1.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.293	64	10	0	0	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr16	58926453	58926453	T	C	ENSMUST00000205986.3	2	ENSMUSG00000090951	missense	I/M	39	Olfr181	ENSMUST00000205986.3:c.117A>G	ENSMUSP00000145877.2:p.Ile39Met	H-2-Kb	8	5	7	AIYLVTMV	AIYLVTIV	NetMHC	143.87	786.44	5.466	316	0.247	259.507	804.095	3.099	786.44	143.87	1131.3	680.2	620.4974485	238.6382195	821.7505435	280.3754606	M1	2.371428571	2.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.246	316	0	0	NA	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr17	40228805	40228805	A	G	ENSMUST00000026499.5	1	ENSMUSG00000025433	missense	V/A	167	Crisp3	ENSMUST00000026499.5:c.500T>C	ENSMUSP00000026499.5:p.Val167Ala	H-2-Kb	8	10	2	YACRYCPV	YVCRYCPV	SMMPMBEC	174.478	161.339	0.925	384	0.273	239.579	312.449	1.304	429.13	286.52	494.4	303	195.7672319	192.6371303	161.3392375	174.4777291	M1	0.514285714	0.514285714	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.274	384	0	0	NA	17qB2	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr17	38304994	38304994	T	C	ENSMUST00000213505.1	5	ENSMUSG00000054940	missense	T/A	156	Olfr137	ENSMUST00000213505.1:c.466A>G	ENSMUSP00000150173.1:p.Thr156Ala	H-2-Kb	8	7	5	CGFTASAL	CGFTTSAL	SMM	193.972	284.931	1.469	131	0.267	240.585	312.177	1.298	583.32	395.88	277.8	199.5	284.9311953	193.9724271	339.4220093	281.6696149	M1	1.185714286	1.185714286	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.27	131	0	0	NA	17qB1	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr16	58915901	58915901	GA	G	ENSMUST00000171656.2	2	ENSMUSG00000090629	FS	S/X	247	Olfr180	ENSMUST00000171656.2:c.739del	ENSMUSP00000128358.1:p.Ser247LeufsTer31	H-2-Kb	8	31	0	KTYQWLYF	NA	NetMHCpan	200.7	NA	NA	203	0.241	382.912	NA	NA	NA	489.31	NA	200.7	NA	445.3895263	NA	320.4350395	M1	-0.157142857	-0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.252	203	0	0	NA	16qC1.2	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr16	58915901	58915901	GA	G	ENSMUST00000171656.2	2	ENSMUSG00000090629	FS	S/X	247	Olfr180	ENSMUST00000171656.2:c.739del	ENSMUSP00000128358.1:p.Ser247LeufsTer31	H-2-Kb	8	29	0	VIKTYQWL	NA	SMM	154.433	NA	NA	203	0.241	282.366	NA	NA	NA	556.53	NA	386.6	NA	154.4329616	NA	178.1312026	M1	-0.285714286	-0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.252	203	0	0	NA	16qC1.2	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr17	37751964	37751964	A	G	ENSMUST00000174675.3	5	ENSMUSG00000060017	missense	I/V	37	Olfr121	ENSMUST00000174675.3:c.109A>G	ENSMUSP00000133865.3:p.Ile37Val	H-2-Kb	8	4	8	CFLLFTLV	CFLLFTLI	SMM	253.945	461.041	1.816	415	0.248	479.578	724.227	1.51	850.4	581.81	2002	2533.9	461.0414792	253.9451951	598.0534499	377.3462166	M1	2.928571429	2.928571429	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	415	0	0	NA	17qB1	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr16	32961669	32961669	A	G	ENSMUST00000135193.8	5	ENSMUSG00000022801	missense	Y/C	271	Lrch3	ENSMUST00000135193.8:c.812A>G	ENSMUSP00000130708.1:p.Tyr271Cys	H-2-Kb	8	5	7	KIHIFKCL	KIHIFKYL	SMMPMBEC	256.886	92.628	0.361	202	0.218	319.381	76.184	0.239	59.74	598.73	59.4	324.9	102.9769442	313.8629122	92.62751223	256.8857419	M1	1.571428571	1.571428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.232	202	52	10	0.192307692	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr17	30761096	30761096	GT	G	ENSMUST00000236140.1	NA	ENSMUSG00000033826	FS	F/X	3035	Dnah8	ENSMUST00000236140.1:c.9108del	ENSMUSP00000157469.1:p.Phe3036LeufsTer5	H-2-Kb	8	5	8	TSLDLVFL	TSLDLVFF	SMM	245.89	3997.054	16.255	114	0.14	452.067	3837.777	8.489	5159.69	706.65	3678.5	633.9	3997.053856	245.8895091	3394.220093	270.2340064	M1	2.014285714	2.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.15	114	0	0	NA	17qA3.3	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.681330063	sgMsh2	cell line
chr17	25937063	25937063	G	T	ENSMUST00000097368.9	1	ENSMUSG00000025728	missense	F/L	130	Pigq	ENSMUST00000097368.9:c.390C>A	ENSMUSP00000094981.3:p.Phe130Leu	H-2-Kb	8	10	2	ILYDQRKL	IFYDQRKL	SMM	308.845	105.133	0.34	52	0.115	421.544	297.252	0.705	424.39	1362.89	457.8	464	105.1332282	308.8445912	170.1139779	379.0879676	M1	-1.3	-1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.14	52	55	12	0.218181818	17qA3.3	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.635908059	sgMsh2	cell line
chr16	59361855	59361855	C	T	ENSMUST00000208875.2	2	ENSMUSG00000095706	missense	R/H	121	Olfr209	ENSMUST00000208875.2:c.362G>A	ENSMUSP00000147068.1:p.Arg121His	H-2-Kb	9	7	5	MAYDHYVAI	MAYDRYVAI	NetMHCpan	10.8	14.4	1.333	414	0.111	29.47	30.259	1.027	27.08	22.19	14.4	10.8	39.27443988	40.65462879	33.43874735	36.74937861	M1	0.171428571	0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.108	414	0	0	NA	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.490557645	sgMsh2	cell line
chr17	37701005	37701005	AT	A	ENSMUST00000213732.1	5	ENSMUSG00000059964	FS	F/X	112	Olfr119	ENSMUST00000213732.1:c.339del	ENSMUSP00000150099.1:p.Phe113LeufsTer3	H-2-Kb	9	4	9	TQMFFFTFL	TQMFFFTFF	NetMHCpan	14.3	117.3	8.203	417	0.228	93.963	252.605	2.688	250.38	40.61	117.3	14.3	271.7127388	161.1053638	254.8296748	147.3160278	M1	2.314285714	2.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2278	417	0	0	NA	17qB1	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr17	28974308	28974308	CA	C	ENSMUST00000119274.2	1	ENSMUSG00000024006	FS	F/X	382	Stk38	ENSMUST00000119274.2:c.1146del	ENSMUSP00000113657.1:p.Phe382LeufsTer42	H-2-Kb	9	38	0	TSMNFQSLI	NA	NetMHC	41.44	NA	NA	78	0.205	157.091	NA	NA	NA	41.44	NA	54.1	NA	260.0818226	NA	263.1782532	M1	0.742857143	0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2051	78	167	23	0.137724551	17qA3.3	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.931605306	sgMsh2	cell line
chr17	20994614	20994614	T	C	ENSMUST00000237195.1	NA	ENSMUSG00000045575	missense	I/V	25	Vmn1r233	ENSMUST00000237195.1:c.73A>G	ENSMUSP00000158452.1:p.Ile25Val	H-2-Kb	9	3	9	VIILFQTMV	VIILFQTMI	NetMHC	46.04	63.11	1.371	168	0.31	142.11	130.172	0.916	63.11	46.04	89.3	129.3	171.044849	154.920896	194.6480243	188.4733717	M1	1.857142857	2.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.304	168	0	0	NA	17qA3.2	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr17	13225949	13225949	T	C	ENSMUST00000080647.4	1	ENSMUSG00000073458	missense	C/R	138	Smok2a	ENSMUST00000080647.4:c.412T>C	ENSMUSP00000094432.2:p.Cys138Arg	H-2-Kb	9	8	4	INYRHNQGI	INYCHNQGI	NetMHCpan	30	54.9	1.83	804	0.143	105.887	125.761	1.188	188.04	80.78	54.9	30	133.6934098	144.9138851	117.8284053	130.9935766	M1	-1.7	-1.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.138	804	0	0	NA	17qA1	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.626823658	sgMsh2	cell line
chr17	37751964	37751964	A	G	ENSMUST00000174675.3	5	ENSMUSG00000060017	missense	I/V	37	Olfr121	ENSMUST00000174675.3:c.109A>G	ENSMUSP00000133865.3:p.Ile37Val	H-2-Kb	9	11	1	VLLMFLVSL	ILLMFLVSL	NetMHC	127.87	166.59	1.303	415	0.248	185.568	235.147	1.267	166.59	127.87	243.7	206.3	294.5167504	200.0368468	226.5948317	171.0999962	M1	2.785714286	3.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	415	0	0	NA	17qB1	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr17	32774731	32774731	T	C	ENSMUST00000159086.9	1	ENSMUSG00000024298	missense	K/R	490	Zfp871	ENSMUST00000159086.9:c.1469A>G	ENSMUSP00000127178.1:p.Lys490Arg	H-2-Kb	9	7	5	SQFQRHKAL	SQFQKHKAL	NetMHC	137.22	270.99	1.975	106	0.245	206.635	341.188	1.651	270.99	137.22	269.6	151.3	460.3731641	307.6876041	411.386466	261.9690589	M1	-0.957142857	-0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.253	106	47	11	0.234042553	17qB1	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr17	37701005	37701005	AT	A	ENSMUST00000213732.1	5	ENSMUSG00000059964	FS	F/X	112	Olfr119	ENSMUST00000213732.1:c.339del	ENSMUSP00000150099.1:p.Phe113LeufsTer3	H-2-Kb	9	5	8	QMFFFTFLV	QMFFFTFFG	SMM	56.378	416.016	7.379	417	0.228	130.663	1702.349	13.029	3181.25	152.62	2823.6	205	416.0159675	56.37804345	581.0988286	108.7051201	M1	2.642857143	2.642857143	TRUE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2278	417	0	0	NA	17qB1	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr16	59361855	59361855	C	T	ENSMUST00000208875.2	2	ENSMUSG00000095706	missense	R/H	121	Olfr209	ENSMUST00000208875.2:c.362G>A	ENSMUSP00000147068.1:p.Arg121His	H-2-Kb	9	5	7	VAMAYDHYV	VAMAYDRYV	NetMHC	188.42	105.62	0.561	414	0.111	314.122	324.279	1.032	105.62	188.42	254	254.9	394.5572246	373.3447082	422.9119919	381.2852457	M1	-0.2	0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.108	414	0	0	NA	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.490557645	sgMsh2	cell line
chr17	28974308	28974308	CA	C	ENSMUST00000119274.2	1	ENSMUSG00000024006	FS	F/X	382	Stk38	ENSMUST00000119274.2:c.1146del	ENSMUSP00000113657.1:p.Phe382LeufsTer42	H-2-Kb	9	40	0	MNFQSLIFL	NA	NetMHCpan	122.5	NA	NA	78	0.205	305.221	NA	NA	NA	257.17	NA	122.5	NA	353.2726369	NA	391.0659467	M1	1.914285714	1.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2051	78	167	23	0.137724551	17qA3.3	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.931605306	sgMsh2	cell line
chr17	19053653	19053653	C	A	ENSMUST00000170424.2	5	ENSMUSG00000096717	missense	S/Y	54	Vmn2r98	ENSMUST00000170424.2:c.161C>A	ENSMUSP00000131261.1:p.Ser54Tyr	H-2-Kb	9	7	5	HTFYYLKKM	HTFYSLKKM	NetMHCpan	162.4	2676.5	16.481	126	0.246	315.655	1812.209	5.741	2171.47	303.78	2676.5	162.4	1432.550696	345.2311699	1452.947761	327.5291816	M1	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.269	126	0	0	NA	17qA3.2	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr16	58915901	58915901	GA	G	ENSMUST00000171656.2	2	ENSMUSG00000090629	FS	S/X	247	Olfr180	ENSMUST00000171656.2:c.739del	ENSMUSP00000128358.1:p.Ser247LeufsTer31	H-2-Kb	9	31	0	KTYQWLYFI	NA	NetMHCpan	171.2	NA	NA	203	0.241	384.332	NA	NA	NA	307.23	NA	171.2	NA	461.4344339	NA	521.4948213	M1	0.585714286	0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.252	203	0	0	NA	16qC1.2	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr17	20993832	20993833	GA	AT	ENSMUST00000237195.1	NA	ENSMUSG00000045575	missense	F/Y	285	Vmn1r233	ENSMUST00000237195.1:c.854_855delinsAT	ENSMUSP00000158452.1:p.Phe285Tyr	H-2-Kb	9	9	3	LVYPTVCPF	LVFPTVCPF	NetMHCpan	389.9	626.9	1.608	152	0.25	445.555	700.779	1.573	594.84	409.04	626.9	389.9	774.6579817	482.0698829	995.9785837	658.0365246	M1	0.614285714	1.585714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.264	152	0	0	NA	17qA3.2	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr16	43898221	43898221	C	A	ENSMUST00000132859.7	5	ENSMUSG00000022701	missense	S/Y	4	Ccdc191	ENSMUST00000132859.7:c.11C>A	ENSMUSP00000116078.1:p.Ser4Tyr	H-2-Kb	9	2	3	MTYMKKELV	MTSMKKELV	NetMHC	416.43	10480.62	25.168	185	0.173	433.746	8552.231	19.717	10480.62	416.43	14641.3	616.9	6623.84254	440.6664633	5600.799166	426.8251484	M1	-0.385714286	-0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.193	185	13	2	0.153846154	16qB4	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.876644681	sgMsh2	cell line
chr16	58926453	58926453	T	C	ENSMUST00000205986.3	2	ENSMUSG00000090951	missense	I/M	39	Olfr181	ENSMUST00000205986.3:c.117A>G	ENSMUSP00000145877.2:p.Ile39Met	H-2-Kb	9	3	9	FSAIYLVTM	FSAIYLVTI	SMM	339.711	641.372	1.888	316	0.247	388.31	695.236	1.79	910.5	521.58	749.1	436.8	641.3720055	339.7113053	579.7623384	339.8208329	M1	2.028571429	2.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.246	316	0	0	NA	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr16	46395206	46395206	G	A	ENSMUST00000023335.12	1	ENSMUSG00000022656	missense	R/C	475	Nectin3	ENSMUST00000023335.12:c.1423C>T	ENSMUSP00000023335.6:p.Arg475Cys	H-2-Kb	9	11	1	CMCPLYSQM	RMCPLYSQM	SMMPMBEC	273.684	323.78	1.183	177	0.277	454.615	534.381	1.175	662.74	603.66	587.8	609	480.961153	305.5694975	323.779986	273.6843727	M1	0.142857143	1	TRUE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.281	177	0	0	NA	16qB5	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr17	56632320	56632320	T	G	ENSMUST00000112979.3	1	ENSMUSG00000040828	missense	F/V	50	Catsperd	ENSMUST00000112979.3:c.148T>G	ENSMUSP00000108603.2:p.Phe50Val	H-2-Db	9	5	7	YAFPNTVVL	YAFPNTFVL	NetMHCpan	9.1	7.6	0.835	134	0.224	33.615	30.922	0.92	12.57	10.27	7.6	9.1	49.27424743	62.03260224	49.83907806	56.96000254	M1	1.314285714	1.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.22	134	2	0	0	17qD	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.999284092	sgMsh2	cell line
chr18	37680939	37680939	G	T	ENSMUST00000192931.1	1	ENSMUSG00000103037	missense	S/I	161	Pcdhgb1	ENSMUST00000192931.1:c.482G>T	ENSMUSP00000141348.1:p.Ser161Ile	H-2-Db	9	3	9	NSLKMYTVI	NSLKMYTVS	NetMHC	158.89	19903.22	125.264	204	0.485	356.594	9153.28	25.669	19903.22	158.89	14990.9	524.3	2996.539453	391.3992598	3315.660076	321.7881152	M1	1.214285714	1.214285714	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.485	204	4	0	0	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr18	37021442	37021442	T	C	ENSMUST00000047614.3	1	ENSMUSG00000103310	missense	Y/H	405	Pcdha12	ENSMUST00000047614.3:c.1213T>C	ENSMUSP00000047609.1:p.Tyr405His	H-2-Db	9	5	7	STFKNYHSL	STFKNYYSL	NetMHCpan	36.5	34.8	0.953	191	0.209	221.131	155.833	0.705	81.22	180.1	34.8	36.5	270.7821299	272.659102	230.4464382	262.162156	M1	-0.871428571	-0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.212	191	0	0	NA	18qB2	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.962946489	sgMsh2	cell line
chr17	84697532	84697532	T	C	ENSMUST00000045714.14	1	ENSMUSG00000024254	missense	F/L	576	Abcg8	ENSMUST00000045714.14:c.1726T>C	ENSMUSP00000035246.8:p.Phe576Leu	H-2-Db	9	10	2	GLMINLDNL	GFMINLDNL	NetMHCpan	367.1	1384.4	3.771	96	0.146	482.343	875.659	1.815	1955.18	698.93	1384.4	367.1	313.0545354	536.5621085	366.91883	428.1244195	M1	0.5	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.157	96	0	0	NA	17qE4	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.713125466	sgMsh2	cell line
chr18	3426897	3426897	T	C	ENSMUST00000162301.7	1	ENSMUSG00000024231	missense	I/T	509	Cul2	ENSMUST00000162301.7:c.1526T>C	ENSMUSP00000125403.1:p.Ile509Thr	H-2-Kb	8	7	5	ISFQTYVL	ISFQIYVL	NetMHC	13.88	29.47	2.123	149	0.315	26.521	33.088	1.248	29.47	13.88	17.6	19.1	42.53436955	34.73281635	36.70624846	33.94220093	M1	0.642857143	0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.3	149	149	29	0.194630872	18qA1	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	sgMsh2	cell line
chr17	84697532	84697532	T	C	ENSMUST00000045714.14	1	ENSMUSG00000024254	missense	F/L	576	Abcg8	ENSMUST00000045714.14:c.1726T>C	ENSMUSP00000035246.8:p.Phe576Leu	H-2-Kb	8	4	8	SFYLTAGL	SFYLTAGF	NetMHC	15.37	172.25	11.207	96	0.146	31.057	352.868	11.362	172.25	15.37	298.6	61	482.7696948	29.69887511	407.1364636	32.41455024	M1	1.4	1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.157	96	0	0	NA	17qE4	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.713125466	sgMsh2	cell line
chr18	61697778	61697778	T	C	ENSMUST00000025472.6	1	ENSMUSG00000024579	missense	Y/C	341	Pcyox1l	ENSMUST00000025472.6:c.1022A>G	ENSMUSP00000025472.1:p.Tyr341Cys	H-2-Kb	8	5	7	VSLVHGCL	VSLVHGYL	NetMHC	42.26	7.17	0.17	109	0.239	48.333	15.42	0.319	7.17	42.26	15	81.6	15.83944645	48.27696948	17.44777291	48.38825938	M1	1.414285714	1.471428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.244	109	87	21	0.24137931	18qE1	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr18	75519813	75519813	T	C	ENSMUST00000165559.2	5	ENSMUSG00000052928	missense	K/E	458	Ctif	ENSMUST00000165559.2:c.1372A>G	ENSMUSP00000129974.1:p.Lys458Glu	H-2-Kb	8	5	7	FAFTAAEL	FAFTAAKL	NetMHC	81.29	76.52	0.941	43	0.186	124.469	90.585	0.728	76.52	81.29	76	111.3	104.6501849	137.6385219	105.6185011	153.0171117	M1	1.114285714	1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.209	43	11	1	0.090909091	18qE3	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.949319887	sgMsh2	cell line
chr17	56777470	56777470	T	C	ENSMUST00000002444.14	1	ENSMUSG00000024206	missense	N/S	668	Rfx2	ENSMUST00000002444.14:c.2003A>G	ENSMUSP00000002444.7:p.Asn668Ser	H-2-Kb	8	6	6	VMGEFSDL	VMGEFNDL	NetMHC	113.49	324.64	2.861	72	0.236	192.202	326.647	1.699	324.64	113.49	576.2	261.7	313.8629122	193.9724271	328.6548155	190.4320313	M1	0.042857143	0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.246	72	8	3	0.375	17qD	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr18	56491908	56491908	A	C	ENSMUST00000237355.1	NA	ENSMUSG00000001700	missense	I/L	358	Gramd3	ENSMUST00000237355.1:c.1072A>C	ENSMUSP00000157710.1:p.Ile358Leu	H-2-Kb	8	4	8	AIIVCALL	AIIVCALI	NetMHC	138.87	1449.26	10.436	89	0.135	182.51	1386.404	7.596	1449.26	138.87	2402.7	511.3	1323.548926	204.0515979	924.1447486	160.9681675	M1	3.585714286	3.585714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.141	89	20	3	0.15	18qD3	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.640450259	sgMsh2	cell line
chr17	42592968	42592968	TA	T	ENSMUST00000068355.7	1	ENSMUSG00000043972	FS	Y/X	159	Opn5	ENSMUST00000068355.7:c.475del	ENSMUSP00000063542.6:p.Tyr159MetfsTer43	H-2-Kb	8	5	7	LAVIWAML	LAVIWAYA	NetMHCpan	147.2	3567.3	24.234	37	0.189	206.513	4062.47	19.672	6717.72	182.49	3567.3	147.2	4557.639811	321.1737185	2604.593785	230.5366617	M1	2.442857143	2.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.199	37	0	0	NA	17qB3	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.903897883	sgMsh2	cell line
chr17	83477824	83477824	T	C	ENSMUST00000096766.11	1	ENSMUSG00000032624	missense	L/P	875	Eml4	ENSMUST00000096766.11:c.2624T>C	ENSMUSP00000094528.4:p.Leu875Pro	H-2-Kb	8	5	7	SIIQWKPV	SIIQWKLV	SMMPMBEC	267.141	735.766	2.754	128	0.188	337.819	1037.14	3.07	1227.56	355.94	1662.3	657.1	846.7203545	319.6980594	735.7664827	267.1406633	M1	0.471428571	0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.195	128	86	24	0.279069767	17qE4	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.885729082	sgMsh2	cell line
chr18	38283868	38283868	A	T	ENSMUST00000025311.7	1	ENSMUSG00000024440	missense	I/N	68	Pcdh12	ENSMUST00000025311.7:c.203T>A	ENSMUSP00000025311.5:p.Ile68Asn	H-2-Kb	8	5	7	AGDAFQNL	AGDAFQIL	SMM	167.009	1136.946	6.808	65	0.338	278.431	2749.302	9.874	5473.8	362.89	4050.7	944.1	1136.946424	167.0090478	1447.904774	193.9724271	M1	-0.357142857	-0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.354	65	0	0	NA	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr17	56424157	56424157	GC	G	ENSMUST00000067538.5	1	ENSMUSG00000013236	FS	G/X	1083	Ptprs	ENSMUST00000067538.5:c.3248del	ENSMUSP00000064048.5:p.Gly1083AlafsTer42	H-2-Kb	8	43	0	STCLMARV	NA	SMMPMBEC	182.701	NA	NA	77	0.247	336.692	NA	NA	NA	464.58	NA	1473.7	NA	208.8045702	NA	182.7006111	M1	1.285714286	1.285714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.266	77	147	1	0.006802721	17qD	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr18	37941753	37941753	A	G	ENSMUST00000043498.8	1	ENSMUSG00000024454	missense	S/P	312	Hdac3	ENSMUST00000043498.8:c.934T>C	ENSMUSP00000037981.7:p.Ser312Pro	H-2-Kb	8	6	6	WTYETPLL	WTYETSLL	SMMPMBEC	359.534	238.638	0.664	255	0.224	430.684	272.762	0.633	289.23	493.46	348.5	494.9	256.2949211	367.908651	238.6382195	359.5340277	M1	-0.028571429	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.222	255	221	41	0.185520362	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr18	37021442	37021442	T	C	ENSMUST00000047614.3	1	ENSMUSG00000103310	missense	Y/H	405	Pcdha12	ENSMUST00000047614.3:c.1213T>C	ENSMUSP00000047609.1:p.Tyr405His	H-2-Kb	8	8	4	KNYHSLVL	KNYYSLVL	NetMHCpan	150	57	0.38	191	0.209	428.416	356.888	0.833	345.02	673.56	57	150	368.7567681	366.2182643	518.4895408	490.6140712	M1	0.428571429	0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.212	191	0	0	NA	18qB2	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.962946489	sgMsh2	cell line
chr18	37473936	37473936	T	C	ENSMUST00000050034.2	NA	ENSMUSG00000047033	missense	F/L	74	Pcdhb15	ENSMUST00000050034.2:c.220T>C	ENSMUSP00000059598.1:p.Phe74Leu	H-2-Kb	8	10	2	RLLLLSPL	RFLLLSPL	SMMPMBEC	429.279	192.637	0.449	97	0.258	459.126	249.124	0.543	305.61	971.72	348.4	437.7	163.5836898	480.5515695	192.6371303	429.2793522	M1	2.371428571	2.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.263	97	0	0	NA	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr18	37021442	37021442	T	C	ENSMUST00000047614.3	1	ENSMUSG00000103310	missense	Y/H	405	Pcdha12	ENSMUST00000047614.3:c.1213T>C	ENSMUSP00000047609.1:p.Tyr405His	H-2-Kb	8	6	6	TFKNYHSL	TFKNYYSL	SMM	267.756	194.42	0.726	191	0.209	366.723	239.62	0.653	359	1171.72	262.6	447.2	194.4195797	267.7564861	216.6406749	286.246378	M1	-0.871428571	-0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.212	191	0	0	NA	18qB2	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.962946489	sgMsh2	cell line
chr18	37021442	37021442	T	C	ENSMUST00000047614.3	1	ENSMUSG00000103310	missense	Y/H	405	Pcdha12	ENSMUST00000047614.3:c.1213T>C	ENSMUSP00000047609.1:p.Tyr405His	H-2-Kb	9	5	7	STFKNYHSL	STFKNYYSL	NetMHCpan	15.4	13.9	0.903	191	0.209	61.313	45.651	0.745	16.12	22.6	13.9	15.4	75.18132925	100.0253316	87.34740358	104.5321782	M1	-0.871428571	-0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.212	191	0	0	NA	18qB2	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.962946489	sgMsh2	cell line
chr19	3948632	3948632	A	G	ENSMUST00000162708.6	1	ENSMUSG00000036908	missense	K/R	517	Unc93b1	ENSMUST00000162708.6:c.1550A>G	ENSMUSP00000124272.1:p.Lys517Arg	H-2-Kb	9	4	8	SSLPMKARL	SSLPMKAKL	NetMHC	44.92	155.55	3.463	65	0.185	188.011	364.422	1.938	155.55	44.92	303	126.5	455.1033161	249.5226649	425.8434778	282.000579	M1	0.185714286	0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.181	65	32	8	0.25	19qA	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	sgMsh2	cell line
chr17	84697532	84697532	T	C	ENSMUST00000045714.14	1	ENSMUSG00000024254	missense	F/L	576	Abcg8	ENSMUST00000045714.14:c.1726T>C	ENSMUSP00000035246.8:p.Phe576Leu	H-2-Kb	9	3	9	NSFYLTAGL	NSFYLTAGF	NetMHC	85.47	432.59	5.061	96	0.146	225.767	521.843	2.311	432.59	85.47	325	89.2	611.0967866	362.3347605	709.9863514	410.4403034	M1	1.4	1.4	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.157	96	0	0	NA	17qE4	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.713125466	sgMsh2	cell line
chr18	3426897	3426897	T	C	ENSMUST00000162301.7	1	ENSMUSG00000024231	missense	I/T	509	Cul2	ENSMUST00000162301.7:c.1526T>C	ENSMUSP00000125403.1:p.Ile509Thr	H-2-Kb	9	5	7	LGISFQTYV	LGISFQIYV	NetMHCpan	142.7	349.8	2.451	149	0.315	483.631	634.236	1.311	421.03	165.38	349.8	142.7	847.4420308	801.8811416	1074.607828	977.7999259	M1	0.742857143	0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.3	149	149	29	0.194630872	18qA1	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	sgMsh2	cell line
chr18	37302556	37302556	A	G	ENSMUST00000051754.1	NA	ENSMUSG00000045498	missense	Q/R	525	Pcdhb3	ENSMUST00000051754.1:c.1574A>G	ENSMUSP00000059180.1:p.Gln525Arg	H-2-Kb	9	11	1	RAFEFHVGA	QAFEFHVGA	NetMHCpan	110.2	284.7	2.583	234	0.179	481.759	390.709	0.811	172.28	176.02	284.7	110.2	496.7181164	857.254947	579.7623384	787.4989801	M1	0.642857143	0.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.184	234	0	0	NA	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.835764877	sgMsh2	cell line
chr17	84697532	84697532	T	C	ENSMUST00000045714.14	1	ENSMUSG00000024254	missense	F/L	576	Abcg8	ENSMUST00000045714.14:c.1726T>C	ENSMUSP00000035246.8:p.Phe576Leu	H-2-Kb	9	4	8	SFYLTAGLM	SFYLTAGFM	NetMHC	185.37	344.02	1.856	96	0.146	368.163	542.485	1.473	344.02	185.37	582.5	462.1	502.4698412	274.2268658	867.4610828	521.4948213	M1	1.271428571	1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.157	96	0	0	NA	17qE4	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.713125466	sgMsh2	cell line
chr18	37680939	37680939	G	T	ENSMUST00000192931.1	1	ENSMUSG00000103037	missense	S/I	161	Pcdhgb1	ENSMUST00000192931.1:c.482G>T	ENSMUSP00000141348.1:p.Ser161Ile	H-2-Kb	9	10	2	VIPNPHFSL	VSPNPHFSL	NetMHC	211.65	119.37	0.564	204	0.485	410.119	267.215	0.652	119.37	211.65	107.8	235.3	415.0591573	584.9382211	522.696991	774.9077422	M1	-0.585714286	0.228571429	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.485	204	4	0	0	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr17	56632320	56632320	T	G	ENSMUST00000112979.3	1	ENSMUSG00000040828	missense	F/V	50	Catsperd	ENSMUST00000112979.3:c.148T>G	ENSMUSP00000108603.2:p.Phe50Val	H-2-Kb	9	3	9	LFYAFPNTV	LFYAFPNTF	NetMHCpan	233	338.6	1.453	134	0.224	281.738	333.442	1.184	338.69	258.61	338.6	233	228.6177783	304.8667072	328.2842143	424.864065	M1	0.242857143	0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.22	134	2	0	0	17qD	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.999284092	sgMsh2	cell line
chr18	25340381	25340381	A	G	ENSMUST00000097643.9	5	ENSMUSG00000033632	missense	N/S	414	AW554918	ENSMUST00000097643.9:c.1241A>G	ENSMUSP00000095248.3:p.Asn414Ser	H-2-Kb	9	10	2	YSWLRTQAM	YNWLRTQAM	NetMHCpan	246.9	389.9	1.579	61	0.328	285.227	354.619	1.243	397.05	289.33	389.9	246.9	301.3769268	283.2109234	319.3375581	287.2433612	M1	-0.3	-0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.353	61	4	1	0.25	18qA2	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr18	36770182	36770182	GC	G	ENSMUST00000001416.7	1	ENSMUSG00000001380	FS	G/X	365	Hars	ENSMUST00000001416.7:c.1094del	ENSMUSP00000001416.6:p.Gly365AlafsTer29	H-2-Kb	9	28	0	SVLEWSGSF	NA	NetMHC	351.69	NA	NA	99	0.273	488.563	NA	NA	NA	351.69	NA	455.8	NA	521.3267383	NA	692.2293355	M1	0.028571429	0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.283	99	80	1	0.0125	18qB2	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr18	44847844	44847844	A	G	ENSMUST00000037763.10	1	ENSMUSG00000034653	missense	Q/R	502	Ythdc2	ENSMUST00000037763.10:c.1505A>G	ENSMUSP00000048340.7:p.Gln502Arg	H-2-Kb	9	9	3	FARVFHLIL	FAQVFHLIL	SMM	224.962	422.776	1.879	121	0.174	340.8	495.95	1.455	462.4	364.46	529.5	447.6	422.7756832	224.9624328	563.9622051	317.1392538	M1	1.628571429	1.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.162	121	22	6	0.272727273	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.735836468	sgMsh2	cell line
chr18	37941753	37941753	A	G	ENSMUST00000043498.8	1	ENSMUSG00000024454	missense	S/P	312	Hdac3	ENSMUST00000043498.8:c.934T>C	ENSMUSP00000037981.7:p.Ser312Pro	H-2-Kb	9	4	8	RCWTYETPL	RCWTYETSL	SMMPMBEC	408.555	698.634	1.71	255	0.224	457.95	789.442	1.724	880.25	477.4	638	438.5	1244.829868	714.6773197	698.6344547	408.5545015	M1	-0.7	-0.7	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.222	255	221	41	0.185520362	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr18	75519813	75519813	T	C	ENSMUST00000165559.2	5	ENSMUSG00000052928	missense	K/E	458	Ctif	ENSMUST00000165559.2:c.1372A>G	ENSMUSP00000129974.1:p.Lys458Glu	H-2-Kb	9	3	9	RSFAFTAAE	RSFAFTAAK	SMM	476.552	1897.186	3.981	43	0.186	497.378	1583.55	3.184	1412.21	511.42	1327.6	1067	1897.186388	476.5516746	1754.890407	483.3369531	M1	0.971428571	1.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.209	43	11	1	0.090909091	18qE3	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.949319887	sgMsh2	cell line
chr18	24017798	24017798	CA	C	ENSMUST00000066497.11	1	ENSMUSG00000051469	FS	L/X	97	Zfp24	ENSMUST00000066497.11:c.290del	ENSMUSP00000064637.5:p.Leu97TrpfsTer31	H-2-Kb	9	16	0	PSYPRSYRL	NA	SMM	79.82	NA	NA	79	0.253	228.119	NA	NA	NA	511.59	NA	329.4	NA	79.81968324	NA	126.8381795	M1	-1.457142857	-1.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.26	79	81	7	0.086419753	18qA2	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr18	44847844	44847844	A	G	ENSMUST00000037763.10	1	ENSMUSG00000034653	missense	Q/R	502	Ythdc2	ENSMUST00000037763.10:c.1505A>G	ENSMUSP00000048340.7:p.Gln502Arg	H-2-Kb	9	7	5	DAFARVFHL	DAFAQVFHL	NetMHCpan	355	1026.1	2.89	121	0.174	436.068	1456.594	3.34	1952.22	609.77	1026.1	355	1233.417199	408.4228203	1679.770694	463.713778	M1	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.162	121	22	6	0.272727273	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.735836468	sgMsh2	cell line
chr18	3426897	3426897	T	C	ENSMUST00000162301.7	1	ENSMUSG00000024231	missense	I/T	509	Cul2	ENSMUST00000162301.7:c.1526T>C	ENSMUSP00000125403.1:p.Ile509Thr	H-2-Kb	9	7	5	ISFQTYVLQ	ISFQIYVLQ	SMMPMBEC	150.401	157.127	1.045	149	0.315	384.668	939.85	2.443	1663.87	612.26	3017.7	2433.7	215.8291001	157.0760603	157.1267038	150.4007493	M1	0.257142857	0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.3	149	149	29	0.194630872	18qA1	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	sgMsh2	cell line
chr2	24953277	24953277	T	C	ENSMUST00000028350.8	1	ENSMUSG00000026974	missense	V/A	87	Zmynd19	ENSMUST00000028350.8:c.260T>C	ENSMUSP00000028350.3:p.Val87Ala	H-2-Db	9	10	2	VAHLNAVTV	VVHLNAVTV	NetMHC	8.32	172.04	20.678	70	0.157	28.28	261.657	9.252	172.04	8.32	293.9	20.7	229.4140437	35.86080216	327.0167515	51.23538453	M1	0.942857143	1.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.197	70	98	17	0.173469388	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.894813482	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Db	9	5	9	SNVVNHFFV	SNVVNHFFC	NetMHC	33.28	4264.52	128.141	310	0.171	169.809	3110.826	18.32	4264.52	33.28	4326.5	48.8	1957.131469	290.8171406	1310.901318	321.7881152	M1	1.642857143	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.171	310	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.776716272	sgMsh2	cell line
chr2	24687761	24687761	A	G	ENSMUST00000041342.11	1	ENSMUSG00000004113	missense	L/P	700	Cacna1b	ENSMUST00000041342.11:c.2099T>C	ENSMUSP00000037416.5:p.Leu700Pro	H-2-Db	9	4	8	TLFGNYTPL	TLFGNYTLL	NetMHCpan	113.2	549.8	4.857	96	0.167	218.505	712.435	3.26	2806.17	647.6	549.8	113.2	840.6592577	260.9876759	584.2113633	176.0232357	M1	-0.128571429	-1.27E-16	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.153	96	1	0	0	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.694956664	sgMsh2	cell line
chr2	5979843	5979843	T	C	ENSMUST00000060092.12	1	ENSMUSG00000043241	missense	L/S	523	Upf2	ENSMUST00000060092.12:c.1568T>C	ENSMUSP00000058375.6:p.Leu523Ser	H-2-Db	9	10	2	NSEINDDTL	NLEINDDTL	SMM	192.584	1215.122	6.31	190	0.253	455.416	4141.561	9.094	10285.6	706.39	7068	1503.5	1215.122325	192.5839101	1157.630605	204.4419431	M1	-0.914285714	-0.914285714	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.239	190	50	10	0.2	2qA1	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr2	22577871	22577871	T	C	ENSMUST00000044749.13	5	ENSMUSG00000025716	missense	V/A	1317	Myo3a	ENSMUST00000044749.13:c.3950T>C	ENSMUSP00000046329.7:p.Val1317Ala	H-2-Db	9	10	2	SAVTQNAPL	SVVTQNAPL	SMMPMBEC	357.742	2283.337	6.383	112	0.188	496.921	3714.743	7.476	9108.98	745.43	4105.8	474.3	3323.686094	519.5412082	2283.336925	357.7420571	M1	0.071428571	0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.195	112	0	0	NA	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.885729082	sgMsh2	cell line
chr19	13502426	13502426	A	G	ENSMUST00000217001.1	2	ENSMUSG00000071629	missense	I/V	28	Olfr1477	ENSMUST00000217001.1:c.82A>G	ENSMUSP00000149565.1:p.Ile28Val	H-2-Kb	8	11	1	VIFTLIYL	IIFTLIYL	SMM	15.267	16.283	1.067	474	0.219	17.014	18.256	1.073	19.54	16.62	27.2	23.8	16.2832091	15.26651821	16.97227266	17.40764414	M1	2.485714286	2.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.222	474	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr19	10207246	10207246	T	G	ENSMUST00000040372.13	1	ENSMUSG00000036372	missense	F/V	66	Tmem258	ENSMUST00000040372.13:c.196T>G	ENSMUSP00000044751.7:p.Phe66Val	H-2-Kb	8	11	1	VGVLFLLL	FGVLFLLL	NetMHC	19.2	194.49	10.13	185	0.195	37.169	178.287	4.797	194.49	19.2	271.5	29.8	162.0839455	44.53895263	157.666708	44.53895263	M1	3.114285714	3.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.193	185	321	54	0.168224299	19qA	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.876644681	sgMsh2	cell line
chr19	44973627	44973627	T	C	ENSMUST00000096053.4	1	ENSMUSG00000036097	missense	I/T	1081	Slf2	ENSMUST00000096053.4:c.3242T>C	ENSMUSP00000093758.3:p.Ile1081Thr	H-2-Kb	8	8	4	LTYTLLHL	LTYILLHL	NetMHCpan	21.4	34.2	1.598	326	0.163	46.318	52.591	1.135	36.2	30.3	34.2	21.4	74.08665723	69.6209588	68.98267002	62.33615346	M1	0.785714286	0.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.155	326	89	21	0.235955056	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.704041065	sgMsh2	cell line
chr19	10207246	10207246	T	G	ENSMUST00000040372.13	1	ENSMUSG00000036372	missense	F/V	66	Tmem258	ENSMUST00000040372.13:c.196T>G	ENSMUSP00000044751.7:p.Phe66Val	H-2-Kb	8	4	8	VASLFMGV	VASLFMGF	NetMHC	37.83	202.78	5.36	185	0.195	128.266	476.977	3.719	202.78	37.83	174.7	78.4	810.4757034	178.1312026	751.173053	216.6406749	M1	1.9	1.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.193	185	321	54	0.168224299	19qA	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.876644681	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	8	13	1	VTFPHYWL	NA	NetMHCpan	13.9	NA	NA	310	0.171	31.617	NA	NA	NA	50.29	NA	13.9	NA	24.5323979	NA	38.70258739	M1	-0.157142857	-0.1	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.171	310	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.776716272	sgMsh2	cell line
chr19	12861870	12861870	T	G	ENSMUST00000213606.1	5	ENSMUSG00000046272	missense	F/V	32	Olfr1444	ENSMUST00000213606.1:c.94T>G	ENSMUSP00000150212.1:p.Phe32Val	H-2-Kb	8	9	3	LIVLFIYL	LIFLFIYL	SMMPMBEC	51.968	5.953	0.115	111	0.126	56.013	7.566	0.135	8.68	52.22	46.7	335.9	6.452678095	59.80534499	5.953056439	51.96847826	M1	3.185714286	3.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.132	111	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.599570455	sgMsh2	cell line
chr19	44973627	44973627	T	C	ENSMUST00000096053.4	1	ENSMUSG00000036097	missense	I/T	1081	Slf2	ENSMUST00000096053.4:c.3242T>C	ENSMUSP00000093758.3:p.Ile1081Thr	H-2-Kb	8	5	7	AYYLTYTL	AYYLTYIL	NetMHC	157.88	325.67	2.063	326	0.163	364.856	839.945	2.302	325.67	157.88	374.5	180.5	1305.389154	569.823033	1434.630303	549.2119775	M1	0.328571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.155	326	89	21	0.235955056	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.704041065	sgMsh2	cell line
chr19	13919308	13919308	G	A	ENSMUST00000216835.1	5	ENSMUSG00000062314	missense	R/H	96	Olfr1505	ENSMUST00000216835.1:c.287G>A	ENSMUSP00000148945.1:p.Arg96His	H-2-Kb	8	7	5	VSYGHCAA	VSYGRCAA	SMM	158.76	1034.523	6.516	358	0.145	177.635	989.009	5.568	1066.54	175.49	462.1	202.1	1034.522641	158.7596015	943.4958625	179.7794304	M1	0.057142857	0.4	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.149	358	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.676787862	sgMsh2	cell line
chr19	44973627	44973627	T	C	ENSMUST00000096053.4	1	ENSMUSG00000036097	missense	I/T	1081	Slf2	ENSMUST00000096053.4:c.3242T>C	ENSMUSP00000093758.3:p.Ile1081Thr	H-2-Kb	8	6	6	YYLTYTLL	YYLTYILL	NetMHCpan	165.3	361.7	2.188	326	0.163	245.167	350.171	1.428	417.91	195.39	361.7	165.3	333.2268594	301.8144301	338.6413603	294.9442949	M1	1.057142857	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.155	326	89	21	0.235955056	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.704041065	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	8	8	6	VNHFFVTF	VNHFFCDI	NetMHCpan	52.1	72.4	1.39	310	0.171	262.687	291.68	1.11	265.13	217.24	72.4	52.1	318.2291802	353.7854762	330.1718172	308.1342684	M1	0.742857143	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.171	310	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.776716272	sgMsh2	cell line
chr2	24687761	24687761	A	G	ENSMUST00000041342.11	1	ENSMUSG00000004113	missense	L/P	700	Cacna1b	ENSMUST00000041342.11:c.2099T>C	ENSMUSP00000037416.5:p.Leu700Pro	H-2-Kb	8	5	7	LFGNYTPL	LFGNYTLL	SMMPMBEC	165.097	454.716	2.754	96	0.167	222.376	562.888	2.531	663.17	251.67	614.4	324.9	511.3755976	193.0812048	454.715753	165.0973111	M1	-0.128571429	-0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.153	96	1	0	0	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.694956664	sgMsh2	cell line
chr19	5982837	5982837	A	C	ENSMUST00000041827.7	1	ENSMUSG00000037451	missense	S/A	267	Slc22a20	ENSMUST00000041827.7:c.799T>G	ENSMUSP00000049473.7:p.Ser267Ala	H-2-Kb	8	6	6	VFFLYAWW	VFFLYSWW	SMM	21.22	47.945	2.259	51	0.118	168.912	331.805	1.964	564.13	295.97	4006.7	4116.2	47.94463315	21.21973715	99.48096742	41.85429201	M1	1.157142857	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.152	51	0	0	NA	19qA	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	sgMsh2	cell line
chr19	10054643	10054643	A	G	ENSMUST00000115995.3	1	ENSMUSG00000024664	missense	H/R	266	Fads3	ENSMUST00000115995.3:c.797A>G	ENSMUSP00000111659.2:p.His266Arg	H-2-Kb	8	11	1	RQHLYFFL	HQHLYFFL	SMMPMBEC	135.75	290.228	2.138	266	0.177	153.427	437.353	2.851	1305.83	369.59	505.1	167.3	369.6068402	139.5532644	290.2284617	135.7500506	M1	0.742857143	0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.175	266	298	48	0.161073826	19qA	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.794885073	sgMsh2	cell line
chr19	13530453	13530453	A	G	ENSMUST00000207093.2	5	ENSMUSG00000095484	missense	Q/R	260	Olfr1480	ENSMUST00000207093.2:c.779A>G	ENSMUSP00000146782.2:p.Gln260Arg	H-2-Kb	8	5	7	IIFMYLRP	IIFMYLQP	SMMPMBEC	44.539	72.234	1.622	478	0.138	268.994	361.823	1.345	821.37	618.2	637.2	487.9	86.44502416	50.08872766	72.2337231	44.53895263	M1	0.8	1.671428571	FALSE	FALSE	TRUE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.137	478	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.622281457	sgMsh2	cell line
chr19	4891072	4891072	G	A	ENSMUST00000053506.7	1	ENSMUSG00000006464	missense	P/L	538	Bbs1	ENSMUST00000053506.7:c.1613C>T	ENSMUSP00000055321.6:p.Pro538Leu	H-2-Kb	8	6	6	AFFKVLLL	AFFKVPLL	SMM	290.228	256.886	0.885	117	0.179	373.08	290.889	0.78	370.92	622.91	210.1	389.1	256.8857419	290.2284617	324.8927349	357.0590129	M1	2.471428571	2.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.187	117	2	0	0	19qA	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	8	17	0	HYWLFLAL	NA	SMMPMBEC	198.948	NA	NA	310	0.171	324.952	NA	NA	NA	632.06	NA	372.1	NA	277.8049629	NA	198.9481935	M1	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.171	310	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.776716272	sgMsh2	cell line
chr19	16383254	16383254	G	A	ENSMUST00000025541.5	1	ENSMUSG00000024639	missense	V/M	314	Gnaq	ENSMUST00000025541.5:c.940G>A	ENSMUSP00000025541.5:p.Val314Met	H-2-Kb	8	6	6	ILKMFMDL	ILKMFVDL	NetMHCpan	249.7	319.7	1.28	171	0.14	388.374	474.546	1.222	1460.9	633.96	319.7	249.7	595.3056439	459.9811133	353.7854762	316.7670499	M1	0.971428571	1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.148	171	230	34	0.147826087	19qA	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.672245662	sgMsh2	cell line
chr19	4891072	4891072	G	A	ENSMUST00000053506.7	1	ENSMUSG00000006464	missense	P/L	538	Bbs1	ENSMUST00000053506.7:c.1613C>T	ENSMUSP00000055321.6:p.Pro538Leu	H-2-Kb	8	10	2	VLLLVPGL	VPLLVPGL	SMM	424.365	410.904	0.968	117	0.179	493.423	1489.038	3.018	3060.09	979.51	2433.9	536.3	410.9036509	424.3654321	544.1767718	450.5468939	M1	2.485714286	2.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.187	117	2	0	0	19qA	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	sgMsh2	cell line
chr19	44973627	44973627	T	C	ENSMUST00000096053.4	1	ENSMUSG00000036097	missense	I/T	1081	Slf2	ENSMUST00000096053.4:c.3242T>C	ENSMUSP00000093758.3:p.Ile1081Thr	H-2-Kb	9	5	7	AYYLTYTLL	AYYLTYILL	NetMHC	38.65	71.83	1.858	326	0.163	52.197	70.367	1.348	71.83	38.65	163.4	63.7	44.06664633	41.69749833	68.90488306	62.69746764	M1	1.057142857	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.155	326	89	21	0.235955056	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.704041065	sgMsh2	cell line
chr2	24687761	24687761	A	G	ENSMUST00000041342.11	1	ENSMUSG00000004113	missense	L/P	700	Cacna1b	ENSMUST00000041342.11:c.2099T>C	ENSMUSP00000037416.5:p.Leu700Pro	H-2-Kb	9	4	8	TLFGNYTPL	TLFGNYTLL	NetMHCpan	51	85.6	1.678	96	0.167	88.814	134.728	1.517	105.68	60.07	85.6	51	193.2457716	151.7434661	163.775902	117.5574075	M1	-0.128571429	-1.27E-16	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.153	96	1	0	0	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.694956664	sgMsh2	cell line
chr19	12861870	12861870	T	G	ENSMUST00000213606.1	5	ENSMUSG00000046272	missense	F/V	32	Olfr1444	ENSMUST00000213606.1:c.94T>G	ENSMUSP00000150212.1:p.Phe32Val	H-2-Kb	9	11	1	VLFIYLVTL	FLFIYLVTL	SMMPMBEC	71.986	213.919	2.972	111	0.126	79.87	322.573	4.039	371.55	80.04	851.5	79.7	273.5961615	92.49324152	213.9193154	71.98632454	M1	2.442857143	3.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.132	111	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.599570455	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	9	13	1	VTFPHYWLF	NA	NetMHCpan	32	NA	NA	310	0.171	35.13	NA	NA	NA	109.74	NA	32	NA	35.08407252	NA	35.17628732	M1	0.342857143	0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.171	310	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.776716272	sgMsh2	cell line
chr19	44973627	44973627	T	C	ENSMUST00000096053.4	1	ENSMUSG00000036097	missense	I/T	1081	Slf2	ENSMUST00000096053.4:c.3242T>C	ENSMUSP00000093758.3:p.Ile1081Thr	H-2-Kb	9	4	8	QAYYLTYTL	QAYYLTYIL	NetMHCpan	118.9	287.1	2.415	326	0.163	148.952	306.938	2.061	357.17	145.46	287.1	118.9	170.2589693	152.4438821	326.7758854	276.8534884	M1	0.328571429	0.328571429	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.155	326	89	21	0.235955056	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.704041065	sgMsh2	cell line
chr19	4891072	4891072	G	A	ENSMUST00000053506.7	1	ENSMUSG00000006464	missense	P/L	538	Bbs1	ENSMUST00000053506.7:c.1613C>T	ENSMUSP00000055321.6:p.Pro538Leu	H-2-Kb	9	5	7	QAFFKVLLL	QAFFKVPLL	NetMHCpan	134.4	124.7	0.928	117	0.179	153.129	125.835	0.822	126.97	161.01	124.7	134.4	120.8119794	145.2479461	153.9040328	179.1636906	M1	2.471428571	2.471428571	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.187	117	2	0	0	19qA	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	sgMsh2	cell line
chr19	13795252	13795252	A	G	ENSMUST00000217384.1	5	ENSMUSG00000044040	missense	Y/H	120	Olfr1497	ENSMUST00000217384.1:c.358T>C	ENSMUSP00000149151.1:p.Tyr120His	H-2-Kb	9	9	3	MAHDRYVAV	MAYDRYVAV	NetMHC	162.02	19.49	0.12	235	0.191	189.123	25.934	0.137	19.49	162.02	16.4	233.6	35.57214058	202.3531643	32.3779986	175.8935847	M1	-0.328571429	-0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.202	235	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.917524484	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	9	7	7	VVNHFFVTF	VVNHFFCDI	SMM	104.018	301.377	2.897	310	0.171	110.553	279.147	2.525	290.84	180.67	126.9	112.4	301.3769268	104.0183595	267.4545558	108.7051201	M1	0.742857143	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.171	310	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.776716272	sgMsh2	cell line
chr19	13919308	13919308	G	A	ENSMUST00000216835.1	5	ENSMUSG00000062314	missense	R/H	96	Olfr1505	ENSMUST00000216835.1:c.287G>A	ENSMUSP00000148945.1:p.Arg96His	H-2-Kb	9	7	5	VSYGHCAAQ	VSYGRCAAQ	SMMPMBEC	70.186	63.863	0.91	358	0.145	153.142	189.09	1.235	297.25	222.51	1499.2	1266.4	80.93008565	83.77414421	63.8631006	70.18592048	M1	-0.328571429	0.4	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.149	358	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.676787862	sgMsh2	cell line
chr19	13530453	13530453	A	G	ENSMUST00000207093.2	5	ENSMUSG00000095484	missense	Q/R	260	Olfr1480	ENSMUST00000207093.2:c.779A>G	ENSMUSP00000146782.2:p.Gln260Arg	H-2-Kb	9	5	7	IIFMYLRPS	IIFMYLQPS	SMM	113.269	84.161	0.743	478	0.138	165.224	166.471	1.008	218.06	223.8	229.3	167.8	84.16082809	113.2687219	114.8814742	162.6484766	M1	0.042857143	1.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.137	478	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.622281457	sgMsh2	cell line
chr19	5892407	5892407	G	A	ENSMUST00000236767.1	NA	ENSMUSG00000044390	missense	P/S	232	Tigd3	ENSMUST00000236767.1:c.694C>T	ENSMUSP00000157880.1:p.Pro232Ser	H-2-Kb	9	10	2	LSTSYHPDL	LPTSYHPDL	NetMHC	228.41	8184.32	35.832	96	0.156	421.567	5889.506	13.97	8184.32	228.41	6947.2	424.1	4831.811688	480.961153	4510.762902	419.0347115	M1	-1.042857143	-0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.165	96	0	0	NA	19qA	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	sgMsh2	cell line
chr19	13705333	13705333	A	G	ENSMUST00000216366.1	5	ENSMUSG00000051156	missense	T/A	169	Olfr1491	ENSMUST00000216366.1:c.505A>G	ENSMUSP00000149071.1:p.Thr169Ala	H-2-Kb	9	6	6	TALIFALPF	TALIFTLPF	NetMHC	239.87	221.04	0.921	339	0.192	260.671	213.815	0.82	221.04	239.87	225.8	251.5	206.5903351	269.8422814	205.7074402	286.5827198	M1	2.557142857	2.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.191	339	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.86756028	sgMsh2	cell line
chr19	16383254	16383254	G	A	ENSMUST00000025541.5	1	ENSMUSG00000024639	missense	V/M	314	Gnaq	ENSMUST00000025541.5:c.940G>A	ENSMUSP00000025541.5:p.Val314Met	H-2-Kb	9	5	7	FILKMFMDL	FILKMFVDL	NetMHC	268.8	623.27	2.319	171	0.14	358.268	502.216	1.402	623.27	268.8	645.4	411.6	381.1623536	362.3347605	317.8703353	354.201177	M1	0.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.148	171	230	34	0.147826087	19qA	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.672245662	sgMsh2	cell line
chr19	44973627	44973627	T	C	ENSMUST00000096053.4	1	ENSMUSG00000036097	missense	I/T	1081	Slf2	ENSMUST00000096053.4:c.3242T>C	ENSMUSP00000093758.3:p.Ile1081Thr	H-2-Kb	9	8	4	LTYTLLHLV	LTYILLHLV	NetMHCpan	420.8	764.9	1.818	326	0.163	426.798	410.951	0.963	451.86	440.77	764.9	420.8	360.6699835	420.8332054	370.0411313	432.7628777	M1	1.485714286	1.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.155	326	89	21	0.235955056	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.704041065	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	9	17	0	HYWLFLALV	NA	SMM	304.166	NA	NA	310	0.171	437.286	NA	NA	NA	459.38	NA	1465.1	NA	304.1655332	NA	415.1929781	M1	2.757142857	2.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.171	310	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.776716272	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	9	14	0	TFPHYWLFL	NA	NetMHCpan	353	NA	NA	310	0.171	400.076	NA	NA	NA	462.8	NA	353	NA	426.6875784	NA	373.4650797	M1	0.485714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.171	310	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.776716272	sgMsh2	cell line
chr19	5982837	5982837	A	C	ENSMUST00000041827.7	1	ENSMUSG00000037451	missense	S/A	267	Slc22a20	ENSMUST00000041827.7:c.799T>G	ENSMUSP00000049473.7:p.Ser267Ala	H-2-Kb	9	6	6	VFFLYAWWL	VFFLYSWWL	SMM	111.715	68.251	0.611	51	0.118	477.142	326.92	0.685	561.53	819.31	1138.8	1653.8	68.25115418	111.7146168	92.31026548	134.9739632	M1	1.3	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.152	51	0	0	NA	19qA	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	9	16	0	PHYWLFLAL	NA	SMM	166.001	NA	NA	310	0.171	366.318	NA	NA	NA	971.99	NA	541.1	NA	166.0007308	NA	191.5358177	M1	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.171	310	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.776716272	sgMsh2	cell line
chr19	6171394	6171394	T	C	ENSMUST00000045042.7	1	ENSMUSG00000039699	missense	L/P	78	Batf2	ENSMUST00000045042.7:c.233T>C	ENSMUSP00000045744.7:p.Leu78Pro	H-2-Kb	9	5	7	AGWGRTPHL	AGWGRTLHL	NetMHCpan	309.4	307.7	0.995	75	0.267	429.93	509.685	1.186	870.88	1085.26	307.7	309.4	579.5754752	482.0698829	439.7947088	377.7896015	M1	-1.071428571	-0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.287	75	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr2	88006632	88006632	T	G	ENSMUST00000099839.3	NA	ENSMUSG00000075141	missense	M/L	49	Olfr1160	ENSMUST00000099839.3:c.145A>C	ENSMUSP00000097427.3:p.Met49Leu	H-2-Db	9	3	9	FSIYSITLL	FSIYSITLM	NetMHC	196.44	127.02	0.647	398	0.151	334.623	267.366	0.799	127.02	196.44	241.9	253.7	292.8329887	415.5468552	336.9535219	439.1066356	M1	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.155	398	0	0	NA	2qD	chr2-82235500-94430128	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.704041065	sgMsh2	cell line
chr2	88006632	88006632	T	G	ENSMUST00000099839.3	NA	ENSMUSG00000075141	missense	M/L	49	Olfr1160	ENSMUST00000099839.3:c.145A>C	ENSMUSP00000097427.3:p.Met49Leu	H-2-Db	9	6	6	YSITLLGNI	YSITLMGNI	NetMHC	256.69	185.65	0.723	398	0.151	487.354	413.213	0.848	185.65	256.69	1299.1	1238	453.5445995	515.9647117	372.8807814	458.7435806	M1	1.714285714	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.155	398	0	0	NA	2qD	chr2-82235500-94430128	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.704041065	sgMsh2	cell line
chr2	31207697	31207697	A	G	ENSMUST00000056433.6	1	ENSMUSG00000000194	missense	K/R	441	Gpr107	ENSMUST00000056433.6:c.1322A>G	ENSMUSP00000056739.5:p.Lys441Arg	H-2-Db	9	4	8	KAAINLARL	KAAINLAKL	NetMHCpan	101.4	102.4	1.01	145	0.255	325.555	235.751	0.724	167.68	392.01	102.4	101.4	303.8225469	298.2771604	364.3929785	352.8336521	M1	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.254	145	105	27	0.257142857	2qB	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr2	30341822	30341822	A	C	ENSMUST00000064447.11	1	ENSMUSG00000052533	missense	D/A	1476	Nup188	ENSMUST00000064447.11:c.4427A>C	ENSMUSP00000065836.5:p.Asp1476Ala	H-2-Db	9	11	1	AVQVNLGYL	DVQVNLGYL	SMMPMBEC	259.161	1344.528	5.188	61	0.262	389.646	4222.314	10.836	7705.49	677.74	7100.1	496.4	1232.02636	282.8915661	1344.528462	259.1612106	M1	0.442857143	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.285	61	51	11	0.215686275	2qB	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr2	76908791	76908791	C	A	ENSMUST00000099981.9	5	ENSMUSG00000051747	missense	K/N	3972	Ttn	ENSMUST00000099981.9:c.11916G>T	ENSMUSP00000097561.3:p.Lys3972Asn	H-2-Db	9	7	5	TTLPNEATL	TTLPKEATL	NetMHCpan	214.8	14142.6	65.841	95	0.368	263.128	11648.396	44.269	24541.97	809.49	14142.6	214.8	9154.19164	281.5917975	8214.289409	244.6639596	M1	0.014285714	0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.372	95	0	0	NA	2qC3	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr2	88006632	88006632	T	G	ENSMUST00000099839.3	NA	ENSMUSG00000075141	missense	M/L	49	Olfr1160	ENSMUST00000099839.3:c.145A>C	ENSMUSP00000097427.3:p.Met49Leu	H-2-Kb	8	4	8	SIYSITLL	SIYSITLM	NetMHC	23.89	82.42	3.45	398	0.151	68.167	260.849	3.827	82.42	23.89	64.5	24.2	480.5515695	119.8781411	439.2785529	112.1346934	M1	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.155	398	0	0	NA	2qD	chr2-82235500-94430128	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.704041065	sgMsh2	cell line
chr2	31207697	31207697	A	G	ENSMUST00000056433.6	1	ENSMUSG00000000194	missense	K/R	441	Gpr107	ENSMUST00000056433.6:c.1322A>G	ENSMUSP00000056739.5:p.Lys441Arg	H-2-Kb	8	5	7	AAINLARL	AAINLAKL	NetMHC	45.63	189.95	4.163	145	0.255	104.51	266.237	2.547	189.95	45.63	211.3	91.6	351.3500341	122.9532464	321.1737185	117.4194387	M1	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.254	145	105	27	0.257142857	2qB	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr2	85786374	85786374	T	C	ENSMUST00000215945.1	5	ENSMUSG00000033850	missense	F/L	288	Olfr1015	ENSMUST00000215945.1:c.862T>C	ENSMUSP00000148957.1:p.Phe288Leu	H-2-Kb	8	4	8	INPLLNPL	INPLLNPF	NetMHC	54.38	1179.23	21.685	244	0.172	137.353	1709.61	12.447	1179.23	54.38	1406.7	150.9	2012.51905	123.8055176	2012.51905	160.228586	M1	0.171428571	0.271428571	FALSE	FALSE	FALSE	0	FALSE	2	Mutect2;Strelka2;MuSe;Vardict	4	0.176	244	0	0	NA	2qD	chr2-82235500-94430128	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.799427274	sgMsh2	cell line
chr2	25285324	25285324	T	C	ENSMUST00000028341.10	1	ENSMUSG00000026965	missense	L/P	792	Anapc2	ENSMUST00000028341.10:c.2375T>C	ENSMUSP00000028341.4:p.Leu792Pro	H-2-Kb	8	6	6	RIYSMPRM	RIYSMLRM	NetMHC	71.23	104.47	1.467	87	0.161	122.271	146.145	1.195	104.47	71.23	83.4	78.3	187.8192059	166.241711	198.4906254	180.6092545	M1	0.014285714	0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.193	87	120	33	0.275	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.876644681	sgMsh2	cell line
chr2	86850868	86850868	T	C	ENSMUST00000099874.1	NA	ENSMUSG00000075171	missense	T/A	277	Olfr1095	ENSMUST00000099874.1:c.829A>G	ENSMUSP00000097459.1:p.Thr277Ala	H-2-Kb	8	5	7	IVSIFYAI	IVSIFYTI	NetMHCpan	75	94.1	1.255	192	0.161	221.713	461.173	2.08	432.86	132.44	94.1	75	525.7024488	316.0385059	489.4856902	310.9853997	M1	2.242857143	2.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.158	192	0	0	NA	2qD	chr2-82235500-94430128	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.717667666	sgMsh2	cell line
chr2	31207697	31207697	A	G	ENSMUST00000056433.6	1	ENSMUSG00000000194	missense	K/R	441	Gpr107	ENSMUST00000056433.6:c.1322A>G	ENSMUSP00000056739.5:p.Lys441Arg	H-2-Kb	8	7	5	INLARLRL	INLAKLRL	NetMHCpan	74.3	156.3	2.104	145	0.255	185.389	321.112	1.732	315.08	157.11	156.3	74.3	327.1447838	213.6682534	353.7854762	227.3735801	M1	0.1	0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.254	145	105	27	0.257142857	2qB	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr2	76633559	76633559	C	G	ENSMUST00000002808.6	1	ENSMUSG00000002731	missense	G/A	253	Prkra	ENSMUST00000002808.6:c.758G>C	ENSMUSP00000002808.6:p.Gly253Ala	H-2-Kb	8	10	2	QAFNITYL	QGFNITYL	NetMHC	165.08	354.06	2.145	106	0.217	336.593	461.286	1.37	354.06	165.08	338	183.7	568.5124764	489.4856902	598.0534499	544.1767718	M1	1.057142857	1.057142857	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.219	106	123	38	0.308943089	2qC3	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.994741892	sgMsh2	cell line
chr2	37405335	37405335	A	C	ENSMUST00000100143.9	5	ENSMUSG00000075376	missense	V/G	223	Rc3h2	ENSMUST00000100143.9:c.668T>G	ENSMUSP00000097721.3:p.Val223Gly	H-2-Kb	8	8	4	VLFGVQRL	VLFVVQRL	NetMHCpan	165.8	52.4	0.316	110	0.191	207.26	71.12	0.343	63.22	364.58	52.4	165.8	79.02054124	199.8664966	79.93555598	214.6545013	M1	0.885714286	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.188	110	69	16	0.231884058	2qB	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.853933679	sgMsh2	cell line
chr2	86850868	86850868	T	C	ENSMUST00000099874.1	NA	ENSMUSG00000075171	missense	T/A	277	Olfr1095	ENSMUST00000099874.1:c.829A>G	ENSMUSP00000097459.1:p.Thr277Ala	H-2-Kb	8	6	6	VSIFYAIG	VSIFYTIG	SMM	88.663	253.361	2.858	192	0.161	289.627	663.518	2.291	3632.36	1257.78	919.9	439.7	253.3611374	88.66250554	407.1364636	139.5532644	M1	1.585714286	2.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.158	192	0	0	NA	2qD	chr2-82235500-94430128	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.717667666	sgMsh2	cell line
chr2	86198386	86198386	C	T	ENSMUST00000215763.1	3	ENSMUSG00000075198	missense	R/H	122	Olfr1045	ENSMUST00000215763.1:c.365G>A	ENSMUSP00000148982.1:p.Arg122His	H-2-Kb	9	7	5	MAYDHYVAI	MAYDRYVAI	NetMHCpan	10.8	14.4	1.333	449	0.14	29.47	30.259	1.027	27.08	22.19	14.4	10.8	39.27443988	40.65462879	33.43874735	36.74937861	M1	0.171428571	0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.143	449	0	0	NA	2qD	chr2-82235500-94430128	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.64953466	sgMsh2	cell line
chr2	86850868	86850868	T	C	ENSMUST00000099874.1	NA	ENSMUSG00000075171	missense	T/A	277	Olfr1095	ENSMUST00000099874.1:c.829A>G	ENSMUSP00000097459.1:p.Thr277Ala	H-2-Kb	9	6	6	VSIFYAIGI	VSIFYTIGI	NetMHCpan	35.2	36.3	1.031	192	0.161	144.235	118.506	0.822	85.22	81.88	36.3	35.2	158.1648595	206.5903351	151.7923903	211.4706012	M1	2.342857143	2.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.158	192	0	0	NA	2qD	chr2-82235500-94430128	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.717667666	sgMsh2	cell line
chr2	89055081	89055081	G	A	ENSMUST00000215048.1	5	ENSMUSG00000075105	missense	A/V	115	Olfr1218	ENSMUST00000215048.1:c.344C>T	ENSMUSP00000149171.1:p.Ala115Val	H-2-Kb	9	11	1	VAMAYDRYV	AAMAYDRYV	NetMHC	105.62	485.64	4.598	324	0.148	324.279	997.291	3.075	485.64	105.62	827.1	254	1172.492302	394.5572246	1167.48148	422.9119919	M1	-0.385714286	0.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.154	324	0	0	NA	2qE1	chr2-82235500-94430128	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.699498864	sgMsh2	cell line
chr2	68118819	68118819	A	G	ENSMUST00000112346.2	NA	ENSMUSG00000034780	missense	S/G	293	B3galt1	ENSMUST00000112346.2:c.877A>G	ENSMUSP00000107965.2:p.Ser293Gly	H-2-Kb	9	10	2	YGLCRYRRV	YSLCRYRRV	NetMHC	124.84	39.29	0.315	208	0.226	342.339	134.347	0.392	39.29	124.84	116.2	280.8	165.6189397	475.4556362	152.4930322	403.8778168	M1	-0.614285714	-0.614285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.241	208	0	0	NA	2qC1.3	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr2	86160001	86160001	T	C	ENSMUST00000215624.1	NA	ENSMUSG00000075202	missense	Y/C	123	Olfr1042	ENSMUST00000215624.1:c.368A>G	ENSMUSP00000151053.1:p.Tyr123Cys	H-2-Kb	9	6	6	MAYDRCVAI	MAYDRYVAI	NetMHCpan	132.7	14.4	0.109	346	0.165	145.305	30.259	0.208	27.08	145.65	14.4	132.7	39.27443988	184.1238299	33.43874735	144.9606074	M1	0.528571429	0.528571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.169	346	0	0	NA	2qD	chr2-82235500-94430128	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.767631871	sgMsh2	cell line
chr2	91284247	91284247	A	G	ENSMUST00000102594.10	1	ENSMUSG00000040591	missense	F/L	147	1110051M20Rik	ENSMUST00000102594.10:c.439T>C	ENSMUSP00000099654.4:p.Phe147Leu	H-2-Kb	9	8	4	QIQLYYSEF	QIQFYYSEF	SMM	177.873	191.034	1.074	195	0.221	233.567	248.13	1.062	224.46	181.21	352.1	442.3	191.0337056	177.8729877	271.8003427	285.9235978	M1	-0.542857143	-0.3	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.218	195	48	3	0.0625	2qE1	chr2-82235500-94430128	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.990199691	sgMsh2	cell line
chr2	88224667	88224667	A	G	ENSMUST00000214386.1	5	ENSMUSG00000075133	missense	Y/H	122	Olfr1170	ENSMUST00000214386.1:c.364T>C	ENSMUSP00000150142.1:p.Tyr122His	H-2-Kb	9	9	3	MAHDRFVAV	MAYDRFVAV	NetMHC	199.13	23.35	0.117	543	0.142	234.065	34.595	0.148	23.35	199.13	17.9	219.1	50.01612019	284.5181656	45.84056903	249.0290432	M1	0.257142857	0.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.139	543	0	0	NA	2qD	chr2-82235500-94430128	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.631365858	sgMsh2	cell line
chr2	91284247	91284247	A	G	ENSMUST00000102594.10	1	ENSMUSG00000040591	missense	F/L	147	1110051M20Rik	ENSMUST00000102594.10:c.439T>C	ENSMUSP00000099654.4:p.Phe147Leu	H-2-Kb	9	9	3	IQLYYSEFL	IQFYYSEFL	NetMHCpan	192.4	29.6	0.154	195	0.221	382.31	125.453	0.328	51.33	204.72	29.6	192.4	199.5767748	559.8993973	219.4067579	608.4851727	M1	0.5	0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.218	195	48	3	0.0625	2qE1	chr2-82235500-94430128	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.990199691	sgMsh2	cell line
chr2	31207697	31207697	A	G	ENSMUST00000056433.6	1	ENSMUSG00000000194	missense	K/R	441	Gpr107	ENSMUST00000056433.6:c.1322A>G	ENSMUSP00000056739.5:p.Lys441Arg	H-2-Kb	9	7	5	INLARLRLF	INLAKLRLF	SMM	221.366	331.215	1.496	145	0.255	236.336	355.812	1.506	295.92	230.43	501.3	275	331.2150024	221.3655323	380.4083139	242.2423104	M1	1	1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.254	145	105	27	0.257142857	2qB	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr2	91284247	91284247	A	G	ENSMUST00000102594.10	1	ENSMUSG00000040591	missense	F/L	147	1110051M20Rik	ENSMUST00000102594.10:c.439T>C	ENSMUSP00000099654.4:p.Phe147Leu	H-2-Kb	9	3	9	FLFAFQIQL	FLFAFQIQF	NetMHCpan	235.9	1129.7	4.789	195	0.221	317.333	742.822	2.341	735.56	268.86	1129.7	235.9	750.0841699	444.7438999	632.7760017	365.8053055	M1	1.242857143	2.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.218	195	48	3	0.0625	2qE1	chr2-82235500-94430128	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.990199691	sgMsh2	cell line
chr2	25446007	25446007	G	T	ENSMUST00000102919.3	1	ENSMUSG00000026944	missense	G/C	2130	Abca2	ENSMUST00000102919.3:c.6388G>T	ENSMUSP00000099983.3:p.Gly2130Cys	H-2-Kb	9	8	4	QSLCYCPQF	QSLGYCPQF	SMMPMBEC	288.569	301.474	1.045	61	0.23	314.099	362.916	1.155	402.9	307.49	1194.2	724.5	322.9311952	320.7081525	301.4740949	288.5692163	M1	0.742857143	0.742857143	TRUE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.237	61	38	4	0.105263158	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr2	36640083	36640083	C	A	ENSMUST00000076850.1	NA	ENSMUSG00000059251	missense	L/M	15	Olfr345	ENSMUST00000076850.1:c.43C>A	ENSMUSP00000076122.1:p.Leu15Met	H-2-Kb	9	3	9	STVSEFILM	STVSEFILL	SMM	386.465	293.839	0.76	231	0.268	441.72	260.57	0.59	196.03	454.04	227.3	429.4	293.8393807	386.4648502	451.0762902	611.2938126	M1	1.842857143	1.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.272	231	0	0	NA	2qB	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr2	85786374	85786374	T	C	ENSMUST00000215945.1	5	ENSMUSG00000033850	missense	F/L	288	Olfr1015	ENSMUST00000215945.1:c.862T>C	ENSMUSP00000148957.1:p.Phe288Leu	H-2-Kb	9	3	9	IINPLLNPL	IINPLLNPF	NetMHCpan	438.7	1653.4	3.769	244	0.172	476.268	1172.73	2.462	1420.23	481.44	1653.4	438.7	794.5294511	471.0966327	925.2306262	534.872168	M1	0.171428571	1.142857143	FALSE	FALSE	FALSE	0	FALSE	2	Mutect2;Strelka2;MuSe;Vardict	4	0.176	244	0	0	NA	2qD	chr2-82235500-94430128	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.799427274	sgMsh2	cell line
chr2	87656102	87656102	A	AT	ENSMUST00000135875.3	5	ENSMUSG00000111747	FS	M/NX	273	Olfr1134	ENSMUST00000135875.3:c.817dup	ENSMUSP00000150837.1:p.Met273AsnfsTer23	H-2-Kb	9	20	0	DSYVKPTYL	NA	SMM	254.748	NA	NA	408	0.176	435.96	NA	NA	NA	486.22	NA	545.4	NA	254.7475407	NA	385.7003207	M1	-0.114285714	-0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.179	408	0	0	NA	2qD	chr2-82235500-94430128	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.813053875	sgMsh2	cell line
chr2	158768178	158768178	C	T	ENSMUST00000029183.2	1	ENSMUSG00000027654	missense	P/L	22	Fam83d	ENSMUST00000029183.2:c.65C>T	ENSMUSP00000029183.2:p.Pro22Leu	H-2-Db	9	8	4	CGPLNPTEL	CGPPNPTEL	NetMHC	65.56	425.32	6.487	47	0.17	216.905	644.766	2.973	425.32	65.56	306.4	93.7	864.2114181	340.1104688	1154.968129	410.7428385	M1	-0.471428571	-0.214285714	TRUE	FALSE	FALSE	1	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.174	47	5	0	0	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.790342873	sgMsh2	cell line
chr2	180583499	180583499	A	G	ENSMUST00000029085.8	1	ENSMUSG00000027569	missense	T/A	83	Mrgbp	ENSMUST00000029085.8:c.247A>G	ENSMUSP00000029085.8:p.Thr83Ala	H-2-Db	9	10	2	SAMYDMQAL	STMYDMQAL	NetMHCpan	338.9	3104.4	9.16	86	0.267	412.293	3121.081	7.57	4556.07	341.95	3104.4	338.9	3137.762006	482.636319	2975.568825	520.6789256	M1	0.157142857	0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.262	86	78	19	0.243589744	2qH4	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr2	121336461	121336461	T	G	ENSMUST00000052029.9	1	ENSMUSG00000033526	missense	S/R	870	Ppip5k1	ENSMUST00000052029.9:c.2608A>C	ENSMUSP00000057632.3:p.Ser870Arg	H-2-Db	9	11	1	RAISELNYM	SAISELNYM	NetMHCpan	138.7	63.8	0.46	110	0.264	375.561	214.339	0.571	146.47	381.66	63.8	138.7	340.1104688	520.7388744	282.2084413	369.4621898	M1	0.157142857	0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.263	110	30	11	0.366666667	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr2	172432369	172432369	G	A	ENSMUST00000109136.2	1	ENSMUSG00000074570	missense	G/D	714	Cass4	ENSMUST00000109136.2:c.2141G>A	ENSMUSP00000104764.2:p.Gly714Asp	H-2-Db	9	6	6	SSLSNDQPP	SSLSNGQPP	SMM	176.856	193.028	1.091	85	0.282	371.434	227.858	0.613	216.07	510.29	1047.3	1743.6	193.0278618	176.8560822	239.6458982	232.5787328	M1	-1.528571429	-1.3	FALSE	FALSE	TRUE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.283	85	0	0	NA	2qH3	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr2	131274254	131274254	T	C	ENSMUST00000183349.1	3	ENSMUSG00000037514	missense	I/T	24	Pank2	ENSMUST00000183349.1:c.70T>C	ENSMUSP00000139203.1:p.Ile24Thr	H-2-Kb	8	8	4	LSRTFSHL	LSRIFSHL	NetMHC	6.68	6.6	0.988	51	0.216	22.689	20.587	0.907	6.6	6.68	16.3	22.9	26.10597994	24.5323979	24.87367755	22.47708563	M1	-0.485714286	-0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.229	51	85	15	0.176470588	2qF1	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr2	180714861	180714861	A	G	ENSMUST00000078687.5	1	ENSMUSG00000027573	missense	N/S	97	Gid8	ENSMUST00000078687.5:c.290A>G	ENSMUSP00000077753.5:p.Asn97Ser	H-2-Kb	8	11	1	SRYLYFHL	NRYLYFHL	NetMHC	8.14	142.06	17.452	94	0.223	15.146	118.423	7.819	142.06	8.14	235.5	34.2	94.78508415	14.91900983	87.24489012	15.37234066	M1	0.014285714	0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	94	76	16	0.210526316	2qH4	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr2	111479432	111479432	C	T	ENSMUST00000214816.1	5	ENSMUSG00000044039	missense	T/I	216	Olfr1288	ENSMUST00000214816.1:c.647C>T	ENSMUSP00000150331.1:p.Thr216Ile	H-2-Kb	8	11	1	ISYIFILA	TSYIFILA	NetMHC	13.7	39.81	2.906	229	0.271	26.729	68.38	2.558	39.81	13.7	67.3	32	79.2027024	28.29697428	69.46083504	25.16170116	M1	2.185714286	2.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.269	229	0	0	NA	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr2	180583499	180583499	A	G	ENSMUST00000029085.8	1	ENSMUSG00000027569	missense	T/A	83	Mrgbp	ENSMUST00000029085.8:c.247A>G	ENSMUSP00000029085.8:p.Thr83Ala	H-2-Kb	8	11	1	AMYDMQAL	TMYDMQAL	NetMHCpan	73.9	56.7	0.767	86	0.267	127.758	106.842	0.836	70.22	74.49	56.7	73.9	143.4630303	181.0256018	185.6692572	236.4503711	M1	0.157142857	0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.262	86	78	19	0.243589744	2qH4	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr2	132240580	132240580	A	G	ENSMUST00000110164.7	2	ENSMUSG00000027341	missense	F/S	90	Tmem230	ENSMUST00000110164.7:c.269T>C	ENSMUSP00000105793.1:p.Phe90Ser	H-2-Kb	8	11	1	SLPGFYHL	FLPGFYHL	NetMHCpan	98.2	522.1	5.317	128	0.188	164.475	459.527	2.794	694.44	114.79	522.1	98.2	387.9180607	214.1608096	396.9538331	229.4774419	M1	0.557142857	0.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.162	128	33	6	0.181818182	2qF2	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.735836468	sgMsh2	cell line
chr3	28794409	28794409	G	A	ENSMUST00000060500.8	1	ENSMUSG00000050192	missense	C/Y	139	Eif5a2	ENSMUST00000060500.8:c.416G>A	ENSMUSP00000050289.7:p.Cys139Tyr	H-2-Kb	8	7	5	VSVMYAMS	VSVMCAMS	SMM	72.734	814.217	11.194	220	0.195	100.979	2855.808	28.281	5114.17	120.91	4897.4	389.8	814.2166892	72.73442335	792.027024	81.04757034	M1	0.985714286	1.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.198	220	16	8	0.5	3qA3	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.899355683	sgMsh2	cell line
chr2	152004194	152004194	T	C	ENSMUST00000073228.11	1	ENSMUSG00000027463	missense	V/A	25	Slc52a3	ENSMUST00000073228.11:c.74T>C	ENSMUSP00000072961.5:p.Val25Ala	H-2-Kb	8	6	6	INGLWAEL	INGLWVEL	SMMPMBEC	144.125	415.662	2.884	51	0.216	176.594	546.352	3.094	646.97	156.97	525.5	212.8	567.204934	196.218522	415.6616909	144.1252256	M1	0.157142857	0.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.213	51	1	0	0	2qG3	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.967488689	sgMsh2	cell line
chr2	119774213	119774213	C	A	ENSMUST00000110793.7	5	ENSMUSG00000034032	missense	G/W	405	Rpap1	ENSMUST00000110793.7:c.1213G>T	ENSMUSP00000106420.1:p.Gly405Trp	H-2-Kb	8	10	2	AWYSLQEL	AGYSLQEL	NetMHC	226.35	163.52	0.722	86	0.233	489.02	233.364	0.477	163.52	226.35	163.4	328.3	303.2075422	649.7405923	343.3523309	704.2713151	M1	-0.342857143	-0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.247	86	13	0	0	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr2	119139420	119139420	GT	G	ENSMUST00000094695.11	1	ENSMUSG00000070730	FS	T/X	387	Rmdn3	ENSMUST00000094695.11:c.1159del	ENSMUSP00000092283.5:p.Thr387ArgfsTer46	H-2-Kb	8	37	0	YSQDFQKL	NA	SMM	227.898	NA	NA	101	0.416	263.57	NA	NA	NA	233.55	NA	302.9	NA	227.8977303	NA	293.5891489	M1	-1.228571429	-1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.42	101	32	2	0.0625	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr2	122798101	122798101	G	A	ENSMUST00000110506.8	1	ENSMUSG00000005803	missense	V/M	175	Sqor	ENSMUST00000110506.8:c.523G>A	ENSMUSP00000106133.2:p.Val175Met	H-2-Kb	8	4	8	SNYSVKTM	SNYSVKTV	NetMHCpan	208.3	441.3	2.119	107	0.178	422.209	474.578	1.124	553.57	406.15	441.3	208.3	390.6069803	438.2682402	507.8553127	549.2119775	M1	-0.585714286	-0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.199	107	134	26	0.194029851	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.903897883	sgMsh2	cell line
chr2	158495606	158495606	C	A	ENSMUST00000109485.8	1	ENSMUSG00000027652	missense	L/I	1496	Ralgapb	ENSMUST00000109485.8:c.4486C>A	ENSMUSP00000105111.2:p.Leu1496Ile	H-2-Kb	8	10	2	AIFQEVGL	ALFQEVGL	SMMPMBEC	137.006	468.533	3.42	113	0.15	277.086	992.844	3.583	2896.55	412.65	1197.3	363.3	788.3879904	190.8710225	468.5328006	137.0061303	M1	1.128571429	1.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.172	113	84	30	0.357142857	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.781258472	sgMsh2	cell line
chr2	155799841	155799841	C	A	ENSMUST00000029141.5	1	ENSMUSG00000027612	missense	F/L	196	Mmp24	ENSMUST00000029141.5:c.588C>A	ENSMUSP00000029141.5:p.Phe196Leu	H-2-Kb	8	8	4	IMILFASG	IMIFFASG	SMM	74.6	83.703	1.122	142	0.268	234.084	180.516	0.771	763.65	419.47	259	383.3	83.70280268	74.60020141	102.0328459	84.86722465	M1	1.942857143	2.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.271	142	6	1	0.166666667	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr2	164488344	164488344	A	C	ENSMUST00000109349.8	1	ENSMUSG00000017734	missense	E/A	32	Dbndd2	ENSMUST00000109349.8:c.95A>C	ENSMUSP00000104973.2:p.Glu32Ala	H-2-Kb	8	10	2	TAFVFPLS	TEFVFPLS	SMM	160.968	825.544	5.129	174	0.224	258.52	4210.814	16.288	12057.51	733.1	7401.3	299.4	825.5435717	160.9681675	1020.328459	217.6406428	M1	1.857142857	1.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.241	174	87	18	0.206896552	2qH3	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr2	111479432	111479432	C	T	ENSMUST00000214816.1	5	ENSMUSG00000044039	missense	T/I	216	Olfr1288	ENSMUST00000214816.1:c.647C>T	ENSMUSP00000150331.1:p.Thr216Ile	H-2-Kb	8	9	3	LIISYIFI	LITSYIFI	SMMPMBEC	310.985	1121.347	3.606	229	0.271	433.688	1722.292	3.971	3964.38	758.62	2286.5	502	1158.083836	365.3759857	1121.346934	310.9853997	M1	2.671428571	2.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.269	229	0	0	NA	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr2	111479432	111479432	C	T	ENSMUST00000214816.1	5	ENSMUSG00000044039	missense	T/I	216	Olfr1288	ENSMUST00000214816.1:c.647C>T	ENSMUSP00000150331.1:p.Thr216Ile	H-2-Kb	8	4	8	CTFFFLII	CTFFFLIT	SMM	244.197	1070.878	4.385	229	0.271	341.314	1400.034	4.102	4867.86	825.53	1660.5	334.5	1070.878008	244.1968177	1139.567356	348.1288376	M1	2.928571429	2.928571429	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.269	229	0	0	NA	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr3	19144391	19144391	CA	C	ENSMUST00000029125.9	1	ENSMUSG00000027599	FS	L/X	135	Armc1	ENSMUST00000029125.9:c.404del	ENSMUSP00000029125.8:p.Leu135TrpfsTer11	H-2-Kb	8	6	6	KAQFFWEL	KAQFFLGT	NetMHCpan	149.3	1986.6	13.306	170	0.247	459.056	3918.761	8.537	6736.57	1628.41	1986.6	149.3	4233.894187	392.4099402	3603.628392	525.7024488	M1	0.471428571	0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.255	170	131	9	0.06870229	3qA2	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr2	132240580	132240580	A	G	ENSMUST00000110164.7	2	ENSMUSG00000027341	missense	F/S	90	Tmem230	ENSMUST00000110164.7:c.269T>C	ENSMUSP00000105793.1:p.Phe90Ser	H-2-Kb	9	10	2	VSLPGFYHL	VFLPGFYHL	NetMHC	22.77	187.13	8.218	128	0.188	93.901	246.108	2.621	187.13	22.77	200.4	30	291.8166046	157.8010905	341.3893746	169.9221522	M1	0.557142857	0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.162	128	33	6	0.181818182	2qF2	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.735836468	sgMsh2	cell line
chr2	180714861	180714861	A	G	ENSMUST00000078687.5	1	ENSMUSG00000027573	missense	N/S	97	Gid8	ENSMUST00000078687.5:c.290A>G	ENSMUSP00000077753.5:p.Asn97Ser	H-2-Kb	9	10	2	TSRYLYFHL	TNRYLYFHL	NetMHC	31.73	61.26	1.931	94	0.223	64.842	81.222	1.253	61.26	31.73	45.4	34.6	101.1835704	95.08455975	115.9444594	104.2917608	M1	0.014285714	0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	94	76	16	0.210526316	2qH4	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr2	155799841	155799841	C	A	ENSMUST00000029141.5	1	ENSMUSG00000027612	missense	F/L	196	Mmp24	ENSMUST00000029141.5:c.588C>A	ENSMUSP00000029141.5:p.Phe196Leu	H-2-Kb	9	8	4	IMILFASGF	IMIFFASGF	NetMHC	41.27	55.74	1.351	142	0.268	68.982	67.964	0.985	55.74	41.27	51	63.3	80.18811416	74.66378462	111.4936158	117.287033	M1	2.071428571	2.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.271	142	6	1	0.166666667	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr2	172454295	172454295	T	C	ENSMUST00000099060.1	1	ENSMUSG00000074569	missense	H/R	203	Gcnt7	ENSMUST00000099060.1:c.608A>G	ENSMUSP00000096659.1:p.His203Arg	H-2-Kb	9	8	4	FQWRYVMNL	FQWHYVMNL	NetMHC	44.73	91.86	2.054	117	0.248	378.766	352.119	0.93	91.86	44.73	121.8	74.8	680.9418088	764.0292757	582.4383998	682.7315929	M1	-0.042857143	-0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.259	117	0	0	NA	2qH3	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr2	180583499	180583499	A	G	ENSMUST00000029085.8	1	ENSMUSG00000027569	missense	T/A	83	Mrgbp	ENSMUST00000029085.8:c.247A>G	ENSMUSP00000029085.8:p.Thr83Ala	H-2-Kb	9	4	8	VIWDHLSAM	VIWDHLSTM	NetMHCpan	73.8	57.5	0.779	86	0.267	77.793	86.56	1.113	88.57	75.95	57.5	73.8	84.54929682	79.63610307	91.88613834	85.35913393	M1	-0.128571429	0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.262	86	78	19	0.243589744	2qH4	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr2	111335694	111335694	C	A	ENSMUST00000099618.1	NA	ENSMUSG00000096554	missense	R/M	128	Olfr1282	ENSMUST00000099618.1:c.383G>T	ENSMUSP00000097213.1:p.Arg128Met	H-2-Kb	9	10	2	CMPLHYSSI	CRPLHYSSI	NetMHC	94.4	1410.95	14.947	577	0.236	136.949	1266.807	9.25	1410.95	94.4	2800.2	169.4	724.6194716	104.4984864	1122.664526	174.2809827	M1	0.085714286	0.185714286	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.236	577	0	0	NA	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr2	153232546	153232546	T	C	ENSMUST00000109795.1	1	ENSMUSG00000051413	missense	H/R	145	Plagl2	ENSMUST00000109795.1:c.434A>G	ENSMUSP00000105419.1:p.His145Arg	H-2-Kb	9	6	6	LGYRRRLAM	LGYRRHLAM	NetMHCpan	106.1	36.4	0.343	72	0.264	202.302	100.457	0.497	49.47	152.11	36.4	106.1	197.7470439	297.9270937	151.4432775	252.4933823	M1	-1.042857143	-1.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.295	72	40	9	0.225	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr2	119139420	119139420	GT	G	ENSMUST00000094695.11	1	ENSMUSG00000070730	FS	T/X	387	Rmdn3	ENSMUST00000094695.11:c.1159del	ENSMUSP00000092283.5:p.Thr387ArgfsTer46	H-2-Kb	9	45	0	DGYIFLSAI	NA	NetMHC	187.49	NA	NA	101	0.416	309.473	NA	NA	NA	187.49	NA	212.4	NA	406.5462879	NA	510.7989549	M1	2.185714286	2.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.42	101	32	2	0.0625	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr2	111479432	111479432	C	T	ENSMUST00000214816.1	5	ENSMUSG00000044039	missense	T/I	216	Olfr1288	ENSMUST00000214816.1:c.647C>T	ENSMUSP00000150331.1:p.Thr216Ile	H-2-Kb	9	11	1	ISYIFILAS	TSYIFILAS	SMM	82.056	140.64	1.714	229	0.271	192.274	312.104	1.623	628.99	271.99	430.9	267.8	140.6403699	82.05593529	193.3080768	116.748148	M1	2.185714286	2.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.269	229	0	0	NA	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr2	117177703	117177703	A	G	ENSMUST00000028829.12	1	ENSMUSG00000027351	missense	I/M	363	Spred1	ENSMUST00000028829.12:c.1089A>G	ENSMUSP00000028829.6:p.Ile363Met	H-2-Kb	9	10	2	CMYQVSCML	CIYQVSCML	SMM	228.618	511.811	2.239	178	0.213	331.205	563.356	1.701	483.81	295.31	614.9	367.1	511.811453	228.6177783	851.6281337	411.386466	M1	0.971428571	0.971428571	TRUE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.23	178	147	26	0.176870748	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr2	111379635	111379635	T	C	ENSMUST00000062407.5	5	ENSMUSG00000108931	missense	F/L	212	Olfr1284	ENSMUST00000062407.5:c.634T>C	ENSMUSP00000052153.4:p.Phe212Leu	H-2-Kb	9	5	7	MTLGTFLLL	MTLGTFFLL	NetMHCpan	246.9	192.4	0.779	342	0.272	312.574	264.729	0.847	258.37	322.38	192.4	246.9	271.0878168	302.7680195	408.5545015	416.1500968	M1	2.414285714	2.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.277	342	0	0	NA	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr2	119774213	119774213	C	A	ENSMUST00000110793.7	5	ENSMUSG00000034032	missense	G/W	405	Rpap1	ENSMUST00000110793.7:c.1213G>T	ENSMUSP00000106420.1:p.Gly405Trp	H-2-Kb	9	10	2	AWYSLQELF	AGYSLQELF	SMM	200.037	798.197	3.99	86	0.233	395.394	1041.581	2.634	1401.72	386.91	1071	1517.9	798.1968324	200.0368468	1012.161934	403.8778168	M1	0.185714286	0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.247	86	13	0	0	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr2	111479432	111479432	C	T	ENSMUST00000214816.1	5	ENSMUSG00000044039	missense	T/I	216	Olfr1288	ENSMUST00000214816.1:c.647C>T	ENSMUSP00000150331.1:p.Thr216Ile	H-2-Kb	9	9	3	LIISYIFIL	LITSYIFIL	SMM	278.042	657.824	2.366	229	0.271	468.593	1123.24	2.397	2222.79	631.89	1350.6	576.4	657.8244329	278.0417415	895.8803273	360.7862685	M1	2.571428571	2.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.269	229	0	0	NA	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr2	111479432	111479432	C	T	ENSMUST00000214816.1	5	ENSMUSG00000044039	missense	T/I	216	Olfr1288	ENSMUST00000214816.1:c.647C>T	ENSMUSP00000150331.1:p.Thr216Ile	H-2-Kb	10	11	1	ISYIFILASV	TSYIFILASV	NetMHC	11.7	24.8	2.12	229	0.271	368.144	585.532	1.59	24.8	11.7	63.6	34.3	1107.464975	701.9885039	1147.78356	872.690001	M1	2.971428571	2.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.269	229	0	0	NA	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr3	83070683	83070683	A	C	ENSMUST00000150268.7	1	ENSMUSG00000027998	missense	N/T	412	Plrg1	ENSMUST00000150268.7:c.1235A>C	ENSMUSP00000114968.1:p.Asn412Thr	H-2-Db	9	11	1	TAIINTLAV	NAIINTLAV	NetMHCpan	14.5	30.8	2.124	91	0.209	39.301	52.348	1.332	24.66	18.95	30.8	14.5	73.89584165	59.65131197	89.44786932	60.61358902	M1	2.085714286	2.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.216	91	156	3	0.019230769	3qE3	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.98111529	sgMsh2	cell line
chr3	80860236	80860236	AT	A	ENSMUST00000029654.14	1	ENSMUSG00000028020	FS	I/X	226	Glrb	ENSMUST00000029654.14:c.676del	ENSMUSP00000029654.8:p.Ile226LeufsTer37	H-2-Db	9	20	0	RRISNMATV	NA	SMMPMBEC	200.249	NA	NA	86	0.233	384.587	NA	NA	NA	531.15	NA	1363	NA	238.0235894	NA	200.2488359	M1	1.057142857	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.259	86	3	0	0	3qE3	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr3	105005546	105005546	C	A	ENSMUST00000077548.11	1	ENSMUSG00000062127	missense	A/S	341	Cttnbp2nl	ENSMUST00000077548.11:c.1021G>T	ENSMUSP00000076751.5:p.Ala341Ser	H-2-Kb	8	11	1	SAYSYAKA	AAYSYAKA	NetMHC	11.09	24.13	2.176	104	0.308	44.921	75.024	1.67	24.13	11.09	53.5	32.2	129.0446488	68.82401428	96.54727043	57.64212727	M1	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.311	104	60	15	0.25	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr3	123479673	123479673	A	G	ENSMUST00000029603.9	1	ENSMUSG00000027978	missense	N/S	306	Prss12	ENSMUST00000029603.9:c.917A>G	ENSMUSP00000029603.8:p.Asn306Ser	H-2-Kb	8	11	1	STYVACRL	NTYVACRL	NetMHC	12.64	327.83	25.936	154	0.247	25.429	206.593	8.124	327.83	12.64	224.5	22.3	181.4429089	28.55880296	188.68614	33.24604589	M1	0.828571429	0.828571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.252	154	1	0	0	3qG1	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr3	106115283	106115283	T	C	ENSMUST00000079132.11	1	ENSMUSG00000062778	missense	F/L	58	Chia1	ENSMUST00000079132.11:c.172T>C	ENSMUSP00000078134.5:p.Phe58Leu	H-2-Kb	8	7	5	LIYALAGM	LIYAFAGM	NetMHC	19.79	2.8	0.141	111	0.225	77.246	7.697	0.1	2.8	19.79	6.3	57.5	9.58826437	101.0974031	9.093686959	96.99291239	M1	1.728571429	2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	111	0	0	NA	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr3	97912727	97912727	T	C	ENSMUST00000029476.8	1	ENSMUSG00000027879	missense	F/L	112	Sec22b	ENSMUST00000029476.8:c.334T>C	ENSMUSP00000029476.2:p.Phe112Leu	H-2-Kb	8	5	7	VSRPYSLI	VSRPYSFI	NetMHC	35.71	43.03	1.205	104	0.26	89.738	68.079	0.759	43.03	35.71	61.9	67.6	74.25744462	111.8767908	100.1705365	143.4630303	M1	-0.1	-0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.263	104	209	33	0.157894737	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr3	108624645	108624645	A	G	ENSMUST00000051145.14	1	ENSMUSG00000040389	missense	Q/R	449	Wdr47	ENSMUST00000051145.14:c.1346A>G	ENSMUSP00000057482.8:p.Gln449Arg	H-2-Kb	8	11	1	RMYQQMLL	QMYQQMLL	NetMHC	67.4	94.29	1.399	80	0.212	121.812	213.148	1.75	94.29	67.4	182.1	93.4	244.1968177	150.2242346	524.4933667	251.0383085	M1	0.442857143	0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.219	80	22	2	0.090909091	3qF3	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.994741892	sgMsh2	cell line
chr3	64407011	64407011	G	T	ENSMUST00000170280.2	5	ENSMUSG00000092049	missense	S/Y	94	Vmn2r4	ENSMUST00000170280.2:c.281C>A	ENSMUSP00000127513.1:p.Ser94Tyr	H-2-Kb	8	7	5	VGYAYSSS	VGYASSSS	SMM	32.266	499.735	15.488	232	0.185	59.556	2027.53	34.044	5514.7	68.21	3156.1	85.8	499.7352678	32.26561891	898.9592386	50.90260401	M1	-0.514285714	0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.201	232	0	0	NA	3qE1	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.912982284	sgMsh2	cell line
chr3	105978389	105978389	T	G	ENSMUST00000000573.8	1	ENSMUSG00000074340	missense	L/R	200	Ovgp1	ENSMUST00000000573.8:c.599T>G	ENSMUSP00000000573.2:p.Leu200Arg	H-2-Kb	8	5	7	TSYDALRL	TSYDALLL	NetMHCpan	51.2	92.7	1.811	102	0.255	65.195	129.261	1.983	119.93	68.34	92.7	51.2	138.5925865	62.04974485	172.480499	72.90209351	M1	-0.1	-0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.252	102	0	0	NA	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr3	93471188	93471188	CA	C	ENSMUST00000029516.2	1	ENSMUSG00000027908	FS	K/X	400	Tchhl1	ENSMUST00000029516.2:c.1202del	ENSMUSP00000029516.2:p.Lys401ArgfsTer118	H-2-Kb	8	107	0	LSYHLHRV	NA	NetMHCpan	70.9	NA	NA	89	0.225	121.556	NA	NA	NA	149.34	NA	70.9	NA	129.9391436	NA	113.172263	M1	-0.714285714	-0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.238	89	0	0	NA	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr3	90065588	90065588	G	T	ENSMUST00000029551.2	1	ENSMUSG00000118506	missense	A/S	100	1700094D03Rik	ENSMUST00000029551.2:c.298G>T	ENSMUSP00000029551.2:p.Ala100Ser	H-2-Kb	8	14	2	KSFYEERL	KAFYEERL	NetMHCpan	201	376.5	1.873	92	0.196	214.892	517.698	2.409	493.72	224.79	376.5	201	759.871227	296.3056959	541.6765067	204.9934573	M1	-1	-1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.197	92	19	4	0.210526316	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.894813482	sgMsh2	cell line
chr3	94885727	94885727	A	G	ENSMUST00000005923.6	1	ENSMUSG00000005779	missense	V/A	170	Psmb4	ENSMUST00000005923.6:c.509T>C	ENSMUSP00000005923.6:p.Val170Ala	H-2-Kb	8	6	6	SFLGYADM	SFLGYVDM	NetMHC	242.11	1089.64	4.501	118	0.237	266.546	906.141	3.4	1089.64	242.11	979.1	570.7	705.8948282	244.1968177	833.1822323	288.8949831	M1	0.728571429	0.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.248	118	566	110	0.19434629	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr3	146584619	146584619	A	C	ENSMUST00000200633.1	1	ENSMUSG00000028185	missense	L/R	199	Dnase2b	ENSMUST00000200633.1:c.596T>G	ENSMUSP00000142872.1:p.Leu199Arg	H-2-Kb	8	5	7	STFHWKRI	STFHWKLI	SMMPMBEC	144.457	341.775	2.366	61	0.246	192.819	354.532	1.839	367.29	243.23	186.2	161.9	499.7352678	223.738128	341.7747702	144.4574685	M1	-0.842857143	-0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.276	61	0	0	NA	3qH2	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr3	88449737	88449737	A	G	ENSMUST00000029700.11	1	ENSMUSG00000028064	missense	L/P	309	Sema4a	ENSMUST00000029700.11:c.926T>C	ENSMUSP00000029700.5:p.Leu309Pro	H-2-Kb	8	5	7	IIRHAVPL	IIRHAVLL	SMM	169.332	448.477	2.649	66	0.227	247.434	538.144	2.175	1021.35	349.03	569.6	310.9	448.476819	169.3323751	506.6872779	183.9670312	M1	0.714285714	0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.215	66	5	0	0	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.97657309	sgMsh2	cell line
chr3	93471188	93471188	CA	C	ENSMUST00000029516.2	1	ENSMUSG00000027908	FS	K/X	400	Tchhl1	ENSMUST00000029516.2:c.1202del	ENSMUSP00000029516.2:p.Lys401ArgfsTer118	H-2-Kb	8	114	0	VMRAFVKF	NA	NetMHCpan	161.4	NA	NA	89	0.225	481.024	NA	NA	NA	374.91	NA	161.4	NA	685.0779666	NA	587.1377443	M1	0.728571429	0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.238	89	0	0	NA	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr3	107311516	107311516	C	CT	ENSMUST00000029502.13	1	ENSMUSG00000027896	FS	L/LX	478	Slc16a4	ENSMUST00000029502.13:c.1440dup	ENSMUSP00000029502.7:p.Val481CysfsTer5	H-2-Kb	8	9	6	VSLFFCTT	VSLFFVPL	NetMHCpan	99	3.7	0.037	113	0.221	150.102	2.995	0.02	3.56	384.31	3.7	99	2.252890066	166.6249377	2.430748352	133.5795574	M1	1.385714286	2.085714286	FALSE	FALSE	FALSE	1	FALSE	0	Strelka2;Vardict	2	0.2212	113	0	0	NA	3qF2.3	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr3	90190923	90190923	C	T	ENSMUST00000029548.8	5	ENSMUSG00000027939	missense	S/L	1394	Nup210l	ENSMUST00000029548.8:c.4181C>T	ENSMUSP00000029548.4:p.Ser1394Leu	H-2-Kb	8	8	4	RTLLAFPL	RTLSAFPL	NetMHCpan	184	237.9	1.293	159	0.226	202.884	249.781	1.231	490.66	429.13	237.9	184	235.9065504	193.0812048	261.6616044	212.686537	M1	1.957142857	1.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.23	159	0	0	NA	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr3	68927791	68927791	A	G	ENSMUST00000107812.7	5	ENSMUSG00000027778	missense	I/T	439	Ift80	ENSMUST00000107812.7:c.1316T>C	ENSMUSP00000103442.1:p.Ile439Thr	H-2-Kb	8	11	1	TIFLFEAS	IIFLFEAS	SMM	114.483	40.902	0.357	69	0.304	496.639	214.122	0.431	378.83	1363.31	368.3	827.8	40.90157201	114.482736	59.94321055	165.4778997	M1	1.628571429	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.311	69	38	6	0.157894737	3qE1	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr3	89266743	89266743	T	G	ENSMUST00000107462.7	3	ENSMUSG00000042737	missense	L/V	4	Dpm3	ENSMUST00000107462.7:c.10T>G	ENSMUSP00000103086.1:p.Leu4Val	H-2-Kb	8	4	1	VTQWLWGL	LTQWLWGL	SMM	283.622	1434.63	5.058	50	0.26	404.513	1559.675	3.856	6651.54	1488.78	1453.1	408.4	1434.630303	283.6220554	1666.249377	400.6268017	M1	0.171428571	0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.287	50	82	21	0.256097561	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr3	64407011	64407011	G	T	ENSMUST00000170280.2	5	ENSMUSG00000092049	missense	S/Y	94	Vmn2r4	ENSMUST00000170280.2:c.281C>A	ENSMUSP00000127513.1:p.Ser94Tyr	H-2-Kb	9	7	5	VGYAYSSSI	VGYASSSSI	NetMHCpan	9	138.7	15.411	232	0.185	58.7	415.913	7.085	402.18	13.86	138.7	9	429.6452354	103.5404385	520.2954165	117.287033	M1	0.185714286	0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.201	232	0	0	NA	3qE1	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.912982284	sgMsh2	cell line
chr3	123479673	123479673	A	G	ENSMUST00000029603.9	1	ENSMUSG00000027978	missense	N/S	306	Prss12	ENSMUST00000029603.9:c.917A>G	ENSMUSP00000029603.8:p.Asn306Ser	H-2-Kb	9	11	1	STYVACRLL	NTYVACRLL	NetMHC	39.19	569.67	14.536	154	0.247	135.345	730.573	5.398	569.67	39.19	439.1	64.1	891.4767066	206.5903351	1337.365144	333.6184037	M1	1.471428571	1.471428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.252	154	1	0	0	3qG1	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr3	93471188	93471188	CA	C	ENSMUST00000029516.2	1	ENSMUSG00000027908	FS	K/X	400	Tchhl1	ENSMUST00000029516.2:c.1202del	ENSMUSP00000029516.2:p.Lys401ArgfsTer118	H-2-Kb	9	107	0	LSYHLHRVM	NA	NetMHCpan	110.3	NA	NA	89	0.225	210.466	NA	NA	NA	180.91	NA	110.3	NA	292.4893114	NA	240.0214196	M1	-0.328571429	-0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.238	89	0	0	NA	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr3	68927791	68927791	A	G	ENSMUST00000107812.7	5	ENSMUSG00000027778	missense	I/T	439	Ift80	ENSMUST00000107812.7:c.1316T>C	ENSMUSP00000103442.1:p.Ile439Thr	H-2-Kb	9	11	1	TIFLFEAST	IIFLFEAST	NetMHC	181.4	78.59	0.433	69	0.304	236.705	140.504	0.594	78.59	181.4	219.4	418.7	139.6722084	239.3922023	141.3350901	234.0183969	M1	0.885714286	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.311	69	38	6	0.157894737	3qE1	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr3	80860236	80860236	AT	A	ENSMUST00000029654.14	1	ENSMUSG00000028020	FS	I/X	226	Glrb	ENSMUST00000029654.14:c.676del	ENSMUSP00000029654.8:p.Ile226LeufsTer37	H-2-Kb	9	6	6	VQLEKLLYL	VQLEKIALP	NetMHC	204.77	13999.81	68.368	86	0.233	281.513	8030.813	28.527	13999.81	204.77	16761.3	288.8	1256.348137	274.2268658	2061.816449	309.2074862	M1	0.928571429	0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.259	86	3	0	0	3qE3	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr3	95008482	95008482	T	C	ENSMUST00000019482.7	1	ENSMUSG00000019338	missense	K/R	993	Zfp687	ENSMUST00000019482.7:c.2978A>G	ENSMUSP00000019482.1:p.Lys993Arg	H-2-Kb	9	8	4	SVKRFPCRL	SVKKFPCRL	NetMHCpan	181.6	255.5	1.407	66	0.242	436.752	462.473	1.059	295.28	204.99	255.5	181.6	629.6656471	668.5132201	679.5947262	729.8775406	M1	-0.771428571	-0.185714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.254	66	47	9	0.191489362	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr3	83767000	83767000	TC	T	ENSMUST00000029625.7	1	ENSMUSG00000027996	FS	I/X	153	Sfrp2	ENSMUST00000029625.7:c.463del	ENSMUSP00000029625.7:p.Leu155SerfsTer42	H-2-Kb	9	42	0	TSWKPFVKM	NA	NetMHCpan	153.6	NA	NA	36	0.25	238.983	NA	NA	NA	217.8	NA	153.6	NA	356.5414284	NA	260.1656766	M1	-0.2	-0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.254	36	0	0	NA	3qE3	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr3	93471188	93471188	CA	C	ENSMUST00000029516.2	1	ENSMUSG00000027908	FS	K/X	400	Tchhl1	ENSMUST00000029516.2:c.1202del	ENSMUSP00000029516.2:p.Lys401ArgfsTer118	H-2-Kb	9	73	0	SWHHLRSNL	NA	NetMHC	295.49	NA	NA	89	0.225	405.071	NA	NA	NA	295.49	NA	1190.6	NA	309.8203926	NA	500.3224609	M1	-1.085714286	-1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.238	89	0	0	NA	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr3	93471188	93471188	CA	C	ENSMUST00000029516.2	1	ENSMUSG00000027908	FS	K/X	400	Tchhl1	ENSMUST00000029516.2:c.1202del	ENSMUSP00000029516.2:p.Lys401ArgfsTer118	H-2-Kb	9	116	0	RAFVKFPTA	NA	NetMHCpan	209	NA	NA	89	0.225	442.946	NA	NA	NA	308.98	NA	209	NA	576.9125678	NA	594.6343592	M1	0.771428571	0.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.238	89	0	0	NA	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr3	89954524	89954524	A	G	ENSMUST00000168276.7	5	ENSMUSG00000060671	missense	F/L	222	Atp8b2	ENSMUST00000168276.7:c.664T>C	ENSMUSP00000128423.1:p.Phe222Leu	H-2-Kb	9	3	9	TLYWKENKL	TLYWKENKF	SMMPMBEC	257.188	444.887	1.73	134	0.231	445.314	945.196	2.123	1418.93	722.43	1306.8	544.6	583.5929005	346.02701	444.8872915	257.1875847	M1	-1.885714286	-1.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	134	20	6	0.3	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr4	136554214	136554214	T	A	ENSMUST00000105847.7	5	ENSMUSG00000036940	missense	K/M	682	Kdm1a	ENSMUST00000105847.7:c.2045A>T	ENSMUSP00000101473.1:p.Lys682Met	H-2-Db	9	6	6	FGNLNMVVL	FGNLNKVVL	NetMHC	15.68	50.61	3.228	78	0.295	76.126	173.018	2.273	50.61	15.68	144.4	54.4	281.5917975	138.8736979	201.6368945	97.8520661	M1	1.557142857	1.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.315	78	197	3	0.015228426	4qD3	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr5	30197383	30197383	G	T	ENSMUST00000088117.10	1	ENSMUSG00000067642	missense	T/N	549	Adgrf3	ENSMUST00000088117.10:c.1646C>A	ENSMUSP00000085440.5:p.Thr549Asn	H-2-Db	9	7	5	MSFSNWPLL	MSFSTWPLL	NetMHCpan	20.7	1467.5	70.894	85	0.353	73.626	3415.693	46.393	6870.02	130.22	1467.5	20.7	3950.208326	81.39917439	2881.177403	65.85215625	M1	0.514285714	0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.368	85	0	0	NA	5qB1	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr4	45307923	45307923	CT	C	ENSMUST00000044673.8	1	ENSMUSG00000035601	FS	L/X	203	Trmt10b	ENSMUST00000044673.8:c.612del	ENSMUSP00000041052.2:p.Pro205LeufsTer8	H-2-Db	9	9	5	FSLFLWKPL	FSLFPLETL	SMM	212.628	545.281	2.564	220	0.318	281.074	540.89	1.924	345.62	310.63	884.2	463.6	545.2805415	212.6277776	536.5003381	251.518538	M1	1.114285714	1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.325	220	34	3	0.088235294	4qB1	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr3	155137385	155137385	AT	A	ENSMUST00000194376.1	1	ENSMUSG00000028182	FS	N/X	298	Lrriq3	ENSMUST00000194376.1:c.897del	ENSMUSP00000142127.1:p.His300ThrfsTer32	H-2-Db	9	7	7	KLWVNFTEV	NA	SMMPMBEC	272.001	NA	NA	127	0.228	443.324	NA	NA	NA	666.64	NA	596.5	NA	290.1482797	NA	272.0006864	M1	0.371428571	0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.257	127	0	0	NA	3qH4	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr4	149106266	149106266	A	G	ENSMUST00000030816.3	1	ENSMUSG00000028974	missense	K/R	84	Dffa	ENSMUST00000030816.3:c.251A>G	ENSMUSP00000030816.3:p.Lys84Arg	H-2-Kb	8	8	4	SNTRFVAL	SNTKFVAL	NetMHC	13.69	27.26	1.991	136	0.301	28.582	49.82	1.743	27.26	13.69	38.3	23.3	61.33946729	33.86413603	84.08915726	46.10414792	M1	0.557142857	0.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe	3	0.315	136	11	1	0.090909091	4qE2	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr5	20886561	20886561	A	G	ENSMUST00000115259.2	1	ENSMUSG00000045435	missense	Y/C	108	Tmem60	ENSMUST00000115259.2:c.323A>G	ENSMUSP00000110914.2:p.Tyr108Cys	H-2-Kb	8	9	3	LSCVFIPL	LSYVFIPL	SMMPMBEC	18.739	1.883	0.1	193	0.223	26.189	2.268	0.087	2.35	26.63	3.4	62.9	2.186452264	25.74779247	1.882521739	18.73872337	M1	2.2	2.2	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.224	193	114	35	0.307017544	5qA3	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr5	27760034	27760034	AG	A	ENSMUST00000002291.11	1	ENSMUSG00000002221	FS	P/X	676	Paxip1	ENSMUST00000002291.11:c.2027del	ENSMUSP00000002291.7:p.Pro676LeufsTer25	H-2-Kb	8	16	0	ISRWRSHL	NA	NetMHC	50.3	NA	NA	52	0.231	160.045	NA	NA	NA	50.3	NA	254.8	NA	159.4924025	NA	160.597951	M1	-1.557142857	-1.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.257	52	42	2	0.047619048	5qB1	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr4	96475526	96475526	T	A	ENSMUST00000124729.3	5	ENSMUSG00000082932	missense	E/V	300	Cyp2j8	ENSMUST00000124729.3:c.899A>T	ENSMUSP00000134591.1:p.Glu300Val	H-2-Kb	8	7	5	TSFNVENL	TSFNEENL	SMM	50.669	120.709	2.382	108	0.25	56.152	244.895	4.361	369.08	53.32	374.1	81	120.7090967	50.66872779	96.32521787	58.9847849	M1	-0.071428571	-0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.263	108	0	0	NA	4qC5	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr4	155966486	155966486	T	C	ENSMUST00000024338.4	1	ENSMUSG00000023571	missense	M/T	304	C1qtnf12	ENSMUST00000024338.4:c.911T>C	ENSMUSP00000024338.4:p.Met304Thr	H-2-Kb	8	12	6	SSFSGTLL	SSFSGMLL	NetMHCpan	66.9	50.3	0.752	135	0.333	86.988	70.723	0.813	34.09	71	50.3	66.9	95.22259222	121.8260042	91.14650073	102.9769442	M1	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.32	135	3	1	0.333333333	4qE2	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr4	45307923	45307923	CT	C	ENSMUST00000044673.8	1	ENSMUSG00000035601	FS	L/X	203	Trmt10b	ENSMUST00000044673.8:c.612del	ENSMUSP00000041052.2:p.Pro205LeufsTer8	H-2-Kb	8	10	4	SLFLWKPL	SLFPLETL	NetMHCpan	45.9	278.7	6.072	220	0.318	65.889	861.472	13.075	1564.85	78.53	278.7	45.9	803.0452175	78.47656766	919.8986892	53.30156983	M1	1.114285714	1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.325	220	34	3	0.088235294	4qB1	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr4	139640665	139640665	A	G	ENSMUST00000039818.9	1	ENSMUSG00000028737	missense	T/A	306	Aldh4a1	ENSMUST00000039818.9:c.916A>G	ENSMUSP00000043821.9:p.Thr306Ala	H-2-Kb	8	8	4	RFRAFPRL	RFRTFPRL	SMM	54.293	53.179	0.979	39	0.436	87.052	74.246	0.853	78.71	97.59	160.4	151.2	53.17897962	54.29252	69.78145169	76.51384027	M1	0.085714286	0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.393	39	13	1	0.076923077	4qD3	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr5	30197383	30197383	G	T	ENSMUST00000088117.10	1	ENSMUSG00000067642	missense	T/N	549	Adgrf3	ENSMUST00000088117.10:c.1646C>A	ENSMUSP00000085440.5:p.Thr549Asn	H-2-Kb	8	7	5	MSFSNWPL	MSFSTWPL	SMMPMBEC	47.945	45.998	0.959	85	0.353	50.143	47.138	0.94	100.15	109.94	42.7	49.5	48.27696948	50.78553127	45.99811133	47.94463315	M1	-0.142857143	-0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.368	85	0	0	NA	5qB1	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr4	115068554	115068554	TC	T	ENSMUST00000030489.8	1	ENSMUSG00000028717	FS	I/X	273	Tal1	ENSMUST00000030489.8:c.824del	ENSMUSP00000030489.2:p.Pro275LeufsTer82	H-2-Kb	8	77	0	QAGAFRPL	NA	NetMHC	137.79	NA	NA	24	0.5	228.578	NA	NA	NA	137.79	NA	588.8	NA	207.8452003	NA	249.310173	M1	0.528571429	0.528571429	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.459	24	0	0	NA	4qD1	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr4	120886945	120886945	C	T	ENSMUST00000071093.8	1	ENSMUSG00000032890	missense	P/L	124	Rims3	ENSMUST00000071093.8:c.371C>T	ENSMUSP00000068178.2:p.Pro124Leu	H-2-Kb	8	7	5	TFIFLTRL	TFIFPTRL	NetMHCpan	49.6	106	2.137	52	0.327	194.02	549.467	2.832	531.73	162.75	106	49.6	567.204934	225.2890066	685.0779666	240.8463117	M1	1.785714286	1.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.304	52	0	0	NA	4qD2.2	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr5	16359028	16359028	T	C	ENSMUST00000039370.13	1	ENSMUSG00000040118	missense	V/A	903	Cacna2d1	ENSMUST00000039370.13:c.2708T>C	ENSMUSP00000049457.7:p.Val903Ala	H-2-Kb	8	4	8	KSYDYQSA	KSYDYQSV	NetMHCpan	154.7	15.4	0.1	73	0.151	204.33	27.778	0.136	12.68	168.92	15.4	154.7	40.15503419	239.7397234	51.49202839	247.5939338	M1	-1.342857143	-1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.179	73	7	0	0	5qA3	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.813053875	sgMsh2	cell line
chr4	88129016	88129016	T	C	ENSMUST00000097992.9	5	ENSMUSG00000038368	missense	V/A	84	Focad	ENSMUST00000097992.9:c.251T>C	ENSMUSP00000095602.3:p.Val84Ala	H-2-Kb	8	8	4	FSYALNGI	FSYVLNGI	NetMHCpan	175.9	127	0.722	61	0.279	248.156	188.254	0.759	134.55	237.05	127	175.9	248.7367755	259.2626764	241.9580078	284.9311953	M1	0.585714286	0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.279	61	19	7	0.368421053	4qC4	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr4	154341810	154341810	G	A	ENSMUST00000030902.12	1	ENSMUSG00000039410	missense	P/L	506	Prdm16	ENSMUST00000030902.12:c.1517C>T	ENSMUSP00000030902.6:p.Pro506Leu	H-2-Kb	8	9	3	APLAFPAL	APPAFPAL	SMM	98.116	230.006	2.344	24	0.292	259.654	642.991	2.476	955.05	390.56	1465.8	847.8	230.0064421	98.11603738	330.9329418	128.7478543	M1	1.542857143	1.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.303	24	0	0	NA	4qE2	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr5	3673162	3673162	T	C	ENSMUST00000014673.8	1	ENSMUSG00000014529	missense	I/T	231	Tmbim7	ENSMUST00000014673.8:c.692T>C	ENSMUSP00000014673.2:p.Ile231Thr	H-2-Kb	8	7	5	LIYGTIAL	LIYGIIAL	SMMPMBEC	338.641	366.218	1.081	139	0.187	379.899	400.735	1.055	501.32	404.38	344.3	444	435.2512229	355.4184757	366.2182643	338.6413603	M1	1.742857143	1.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.197	139	0	0	NA	5qA1	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.894813482	sgMsh2	cell line
chr5	3673162	3673162	T	C	ENSMUST00000014673.8	1	ENSMUSG00000014529	missense	I/T	231	Tmbim7	ENSMUST00000014673.8:c.692T>C	ENSMUSP00000014673.2:p.Ile231Thr	H-2-Kb	8	5	7	VLLIYGTI	VLLIYGII	NetMHCpan	142	579.7	4.082	139	0.187	310.354	756.542	2.438	1677.7	445.42	579.7	142	772.2181412	337.0854446	740.8665723	283.6220554	M1	2.028571429	2.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.197	139	0	0	NA	5qA1	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.894813482	sgMsh2	cell line
chr5	29478259	29478259	T	A	ENSMUST00000165512.3	1	ENSMUSG00000001566	missense	N/I	6	Mnx1	ENSMUST00000165512.3:c.17A>T	ENSMUSP00000129503.2:p.Asn6Ile	H-2-Kb	8	5	2	KIFRIDAL	KNFRIDAL	NetMHCpan	239.7	176.2	0.735	58	0.259	312.442	360.883	1.155	460.29	468.11	176.2	239.7	352.1599796	316.0385059	369.6068402	308.8445912	M1	1.342857143	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.273	58	1	0	0	5qB1	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr4	154341810	154341810	G	A	ENSMUST00000030902.12	1	ENSMUSG00000039410	missense	P/L	506	Prdm16	ENSMUST00000030902.12:c.1517C>T	ENSMUSP00000030902.6:p.Pro506Leu	H-2-Kb	8	4	8	LPFSAAPL	LPFSAAPP	SMMPMBEC	114.483	2969.888	25.942	24	0.292	296.236	13101.944	44.228	30863.34	472.87	23234	1124.1	2895.609548	119.6024291	2969.887511	114.482736	M1	0.885714286	0.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.303	24	0	0	NA	4qE2	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr5	24320084	24320084	TG	T	ENSMUST00000036092.9	1	ENSMUSG00000038319	FS	P/X	1135	Kcnh2	ENSMUST00000036092.9:c.3405del	ENSMUSP00000047705.7:p.Thr1136LeufsTer131	H-2-Kb	8	48	0	AHPGFRAL	NA	SMM	380.838	NA	NA	36	0.167	492.013	NA	NA	NA	492.28	NA	1903.8	NA	380.8377582	NA	491.7450535	M1	-0.185714286	-0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.188	36	3	2	0.666666667	5qA3	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.853933679	sgMsh2	cell line
chr4	24521278	24521278	T	C	ENSMUST00000108222.8	5	ENSMUSG00000045751	missense	L/P	385	Mms22l	ENSMUST00000108222.8:c.1154T>C	ENSMUSP00000103857.2:p.Leu385Pro	H-2-Kb	8	5	7	WSFIEEPL	WSFIEELL	SMMPMBEC	169.332	466.38	2.754	168	0.232	397.985	1027.105	2.581	1382.89	595.54	1358	533.1	696.209588	262.8693795	466.380088	169.3323751	M1	0.242857143	0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.255	168	20	6	0.3	4qA3	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr4	53083890	53083890	A	G	ENSMUST00000030010.3	1	ENSMUSG00000015243	missense	W/R	648	Abca1	ENSMUST00000030010.3:c.1942T>C	ENSMUSP00000030010.3:p.Trp648Arg	H-2-Kb	8	11	1	RIYSVAVI	WIYSVAVI	SMM	334.765	451.586	1.349	63	0.349	400.859	795.858	1.985	1140.13	619.27	1407.1	446.3	451.5855118	334.7649647	409.0157201	355.4184757	M1	2.442857143	2.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.357	63	2	0	0	4qB2	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr4	41093679	41093679	A	G	ENSMUST00000055327.7	1	ENSMUSG00000028435	missense	V/A	245	Aqp3	ENSMUST00000055327.7:c.734T>C	ENSMUSP00000055110.7:p.Val245Ala	H-2-Kb	8	6	6	RHWWWAPI	RHWWWVPI	NetMHCpan	222.3	379.8	1.709	42	0.357	438.129	1265.319	2.888	2567.84	683.29	379.8	222.3	1512.655393	523.2870654	1017.981768	352.9717922	M1	-0.171428571	-0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.37	42	2	1	0.5	4qA5	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr4	143895385	143895385	T	C	ENSMUST00000105767.1	5	ENSMUSG00000078512	missense	I/V	467	Pramef6	ENSMUST00000105767.1:c.1399A>G	ENSMUSP00000101393.1:p.Ile467Val	H-2-Kb	9	13	2	CVYSFVGNI	CIYSFVGNI	NetMHC	23.45	22.06	0.941	196	0.311	90.759	96.799	1.067	22.06	23.45	42.9	35.6	150.6988715	145.9183802	252.4933823	247.8848587	M1	0.785714286	1.6	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.314	196	0	0	NA	4qE1	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr5	30197383	30197383	G	T	ENSMUST00000088117.10	1	ENSMUSG00000067642	missense	T/N	549	Adgrf3	ENSMUST00000088117.10:c.1646C>A	ENSMUSP00000085440.5:p.Thr549Asn	H-2-Kb	9	7	5	MSFSNWPLL	MSFSTWPLL	NetMHC	29.95	32.23	1.076	85	0.353	44.822	47.855	1.068	32.23	29.95	34.6	30.2	61.10967866	59.44427026	104.5321782	81.32985537	M1	0.514285714	0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.368	85	0	0	NA	5qB1	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr4	124942369	124942369	T	C	ENSMUST00000094769.12	1	ENSMUSG00000044730	missense	Y/H	158	9930104L06Rik	ENSMUST00000094769.12:c.472T>C	ENSMUSP00000154851.1:p.Tyr158His	H-2-Kb	9	4	8	SSYLKRKHL	SSYLKRKYL	NetMHC	33.01	28.82	0.873	84	0.333	69.015	66.097	0.958	28.82	33.01	64.1	72.7	68.09418088	65.32960014	84.382036	77.13473645	M1	-1.314285714	-1.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.333	84	7	3	0.428571429	4qD2.2	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr4	120886945	120886945	C	T	ENSMUST00000071093.8	1	ENSMUSG00000032890	missense	P/L	124	Rims3	ENSMUST00000071093.8:c.371C>T	ENSMUSP00000068178.2:p.Pro124Leu	H-2-Kb	9	6	6	GTFIFLTRL	GTFIFPTRL	NetMHCpan	28.1	39.6	1.409	52	0.327	60.436	144.364	2.389	86.31	36.1	39.6	28.1	215.332707	91.43448014	202.4184057	84.77152578	M1	1.785714286	1.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.304	52	0	0	NA	4qD2.2	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr4	154341810	154341810	G	A	ENSMUST00000030902.12	1	ENSMUSG00000039410	missense	P/L	506	Prdm16	ENSMUST00000030902.12:c.1517C>T	ENSMUSP00000030902.6:p.Pro506Leu	H-2-Kb	9	8	4	AAPLAFPAL	AAPPAFPAL	NetMHCpan	65.2	98.4	1.509	24	0.292	246.155	434.492	1.765	155.95	68.56	98.4	65.2	713.0336075	423.7502818	982.3132453	598.7561676	M1	1.542857143	1.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.303	24	0	0	NA	4qE2	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr4	59911934	59911934	A	G	ENSMUST00000030081.1	1	ENSMUSG00000028386	missense	I/T	426	Slc46a2	ENSMUST00000030081.1:c.1277T>C	ENSMUSP00000030081.1:p.Ile426Thr	H-2-Kb	9	10	2	TTYNKIYQL	TIYNKIYQL	NetMHCpan	49	54.2	1.106	85	0.4	89.965	76.17	0.847	58.53	77.07	54.2	49	122.4926415	145.2479461	93.81018664	102.8608242	M1	-0.742857143	-0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.398	85	0	0	NA	4qB3	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr4	104679526	104679526	GA	G	ENSMUST00000106830.8	1	ENSMUSG00000028519	FS	E/X	171	Dab1	ENSMUST00000106830.8:c.518del	ENSMUSP00000102443.2:p.Lys173ArgfsTer68	H-2-Kb	9	57	0	RTFTRFPPA	NA	NetMHCpan	78.3	NA	NA	59	0.356	222.469	NA	NA	NA	135.73	NA	78.3	NA	419.8653158	NA	309.2074862	M1	-0.142857143	-0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.375	59	0	0	NA	4qC6	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr5	24320084	24320084	TG	T	ENSMUST00000036092.9	1	ENSMUSG00000038319	FS	P/X	1135	Kcnh2	ENSMUST00000036092.9:c.3405del	ENSMUSP00000047705.7:p.Thr1136LeufsTer131	H-2-Kb	9	47	0	VAHPGFRAL	NA	NetMHC	146.33	NA	NA	36	0.167	300.844	NA	NA	NA	146.33	NA	175	NA	426.6875784	NA	463.713778	M1	-0.185714286	-0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.188	36	3	2	0.666666667	5qA3	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.853933679	sgMsh2	cell line
chr3	157312902	157312902	C	T	ENSMUST00000074015.10	1	ENSMUSG00000040037	missense	L/F	347	Negr1	ENSMUST00000074015.10:c.1039C>T	ENSMUSP00000073664.4:p.Leu347Phe	H-2-Kb	9	12	9	IFYLKNAIF	IFYLKNAIL	SMM	146.592	86.918	0.593	97	0.309	161.23	88.179	0.547	89.44	172.75	131.7	353.4	86.91805512	146.5919088	86.54659777	149.7097207	M1	0.6	0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.313	97	0	0	NA	3qH4	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr4	45307923	45307923	CT	C	ENSMUST00000044673.8	1	ENSMUSG00000035601	FS	L/X	203	Trmt10b	ENSMUST00000044673.8:c.612del	ENSMUSP00000041052.2:p.Pro205LeufsTer8	H-2-Kb	9	9	5	FSLFLWKPL	FSLFPLETL	NetMHCpan	127.2	1483.2	11.66	220	0.318	215.539	984.497	4.568	761.94	209.13	1483.2	127.2	889.4263671	253.577082	1079.567993	221.9473684	M1	1.114285714	1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.325	220	34	3	0.088235294	4qB1	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr4	143895385	143895385	T	C	ENSMUST00000105767.1	5	ENSMUSG00000078512	missense	I/V	467	Pramef6	ENSMUST00000105767.1:c.1399A>G	ENSMUSP00000101393.1:p.Ile467Val	H-2-Kb	9	10	5	RNFCVYSFV	RNFCIYSFV	NetMHCpan	85.7	73	0.852	196	0.311	357.494	308.946	0.864	234.97	248.06	73	85.7	382.9217191	472.1826226	388.3738676	466.9280884	M1	2.057142857	2.057142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.314	196	0	0	NA	4qE1	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr5	3673162	3673162	T	C	ENSMUST00000014673.8	1	ENSMUSG00000014529	missense	I/T	231	Tmbim7	ENSMUST00000014673.8:c.692T>C	ENSMUSP00000014673.2:p.Ile231Thr	H-2-Kb	9	7	5	LIYGTIALV	LIYGIIALV	NetMHC	255.57	661.63	2.589	139	0.187	399.072	568.543	1.425	661.63	255.57	1069.9	902.4	475.4556362	346.02701	472.3348608	452.1161284	M1	1.7	1.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.197	139	0	0	NA	5qA1	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.894813482	sgMsh2	cell line
chr5	29478259	29478259	T	A	ENSMUST00000165512.3	1	ENSMUSG00000001566	missense	N/I	6	Mnx1	ENSMUST00000165512.3:c.17A>T	ENSMUSP00000129503.2:p.Asn6Ile	H-2-Kb	9	5	2	KIFRIDALL	KNFRIDALL	NetMHC	294.87	154.93	0.525	58	0.259	482.133	349.528	0.725	154.93	294.87	223.6	334.6	475.4556362	629.6656471	486.6872848	649.007925	M1	1.242857143	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.273	58	1	0	0	5qB1	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr5	16359028	16359028	T	C	ENSMUST00000039370.13	1	ENSMUSG00000040118	missense	V/A	903	Cacna2d1	ENSMUST00000039370.13:c.2708T>C	ENSMUSP00000049457.7:p.Val903Ala	H-2-Kb	9	4	8	KSYDYQSAC	KSYDYQSVC	NetMHCpan	276.2	497	1.799	73	0.151	416.065	787.162	1.892	922.32	305.81	497	276.2	924.9324152	656.3114787	652.0036095	526.3201534	M1	-0.871428571	-0.871428571	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.179	73	7	0	0	5qA3	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.813053875	sgMsh2	cell line
chr3	155137385	155137385	AT	A	ENSMUST00000194376.1	1	ENSMUSG00000028182	FS	N/X	298	Lrriq3	ENSMUST00000194376.1:c.897del	ENSMUSP00000142127.1:p.His300ThrfsTer32	H-2-Kb	9	21	0	LTFHQYKGI	NA	NetMHCpan	249.3	NA	NA	127	0.228	334.616	NA	NA	NA	317.47	NA	249.3	NA	377.6678362	NA	351.7628732	M1	-0.714285714	-0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.257	127	0	0	NA	3qH4	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr4	139640665	139640665	A	G	ENSMUST00000039818.9	1	ENSMUSG00000028737	missense	T/A	306	Aldh4a1	ENSMUST00000039818.9:c.916A>G	ENSMUSP00000043821.9:p.Thr306Ala	H-2-Kb	9	4	8	QNLDRFRAF	QNLDRFRTF	SMM	226.001	239.944	1.062	39	0.436	312.457	354.948	1.136	385.37	323.44	1098.6	1301.5	239.9440583	226.0008122	324.526376	301.4740949	M1	-0.185714286	-0.185714286	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.393	39	13	1	0.076923077	4qD3	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr4	107977643	107977643	C	T	ENSMUST00000238795.1	NA	ENSMUSG00000008932	missense	R/W	69	Slc1a7	ENSMUST00000238795.1:c.205C>T	ENSMUSP00000158982.1:p.Arg69Trp	H-2-Kb	9	10	2	MWMLKMLIL	MRMLKMLIL	SMM	197.747	1199.803	6.067	66	0.258	326.974	1997.963	6.11	2698	356.61	2787.1	914.5	1199.803156	197.7470439	1297.926202	297.3377153	M1	2.257142857	2.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.246	66	0	0	NA	4qC7	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr4	104679526	104679526	GA	G	ENSMUST00000106830.8	1	ENSMUSG00000028519	FS	E/X	171	Dab1	ENSMUST00000106830.8:c.518del	ENSMUSP00000102443.2:p.Lys173ArgfsTer68	H-2-Kb	9	24	0	CTRPFWKRM	NA	NetMHCpan	330.5	NA	NA	59	0.356	394.527	NA	NA	NA	367.25	NA	330.5	NA	421.8033261	NA	629.8686601	M1	-1.528571429	-0.9	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.375	59	0	0	NA	4qC6	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr5	3673162	3673162	T	C	ENSMUST00000014673.8	1	ENSMUSG00000014529	missense	I/T	231	Tmbim7	ENSMUST00000014673.8:c.692T>C	ENSMUSP00000014673.2:p.Ile231Thr	H-2-Kb	9	4	8	SVLLIYGTI	SVLLIYGII	NetMHCpan	276.2	1014.9	3.675	139	0.187	446.055	804.767	1.804	1087.34	388.32	1014.9	276.2	565.0800826	505.9527957	594.6343592	503.7905305	M1	2.028571429	2.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.197	139	0	0	NA	5qA1	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.894813482	sgMsh2	cell line
chr4	134853048	134853048	T	C	ENSMUST00000030628.14	1	ENSMUSG00000028826	missense	I/V	24	Maco1	ENSMUST00000030628.14:c.70A>G	ENSMUSP00000030628.7:p.Ile24Val	H-2-Kb	9	11	1	VYGSTFLYL	IYGSTFLYL	SMM	209.464	308.397	1.472	13	0.231	391.129	504.01	1.289	551.72	437.71	595.7	551.2	308.3968972	209.4642929	456.2995075	344.5482116	M1	1.028571429	1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.25	13	53	17	0.320754717	4qD3	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr4	88129016	88129016	T	C	ENSMUST00000097992.9	5	ENSMUSG00000038368	missense	V/A	84	Focad	ENSMUST00000097992.9:c.251T>C	ENSMUSP00000095602.3:p.Val84Ala	H-2-Kb	9	8	4	FSYALNGIL	FSYVLNGIL	NetMHCpan	258.4	215.2	0.833	61	0.279	384.776	261.087	0.679	316.87	483.41	215.2	258.4	255.3347944	403.747643	266.8394274	365.8053055	M1	1.242857143	1.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.279	61	19	7	0.368421053	4qC4	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr5	31040436	31040436	T	C	ENSMUST00000114668.6	1	ENSMUSG00000006641	missense	I/V	310	Slc5a6	ENSMUST00000114668.6:c.928A>G	ENSMUSP00000110316.1:p.Ile310Val	H-2-Kb	9	11	1	VGLVMFAYY	IGLVMFAYY	SMM	176.242	259.484	1.472	54	0.111	453.049	578.617	1.277	846.6	671.54	1237.9	1273.8	259.483651	176.2422384	310.6347231	234.557865	M1	1.7	2.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.129	54	8	5	0.625	5qB1	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.585943854	sgMsh2	cell line
chr3	155137385	155137385	AT	A	ENSMUST00000194376.1	1	ENSMUSG00000028182	FS	N/X	298	Lrriq3	ENSMUST00000194376.1:c.897del	ENSMUSP00000142127.1:p.His300ThrfsTer32	H-2-Kb	9	10	4	VNFTEVGWM	NA	SMMPMBEC	346.937	NA	NA	127	0.228	357.03	NA	NA	NA	962.72	NA	361.6	NA	352.4601324	NA	346.9365057	M1	0.485714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.257	127	0	0	NA	3qH4	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr5	34848948	34848948	T	A	ENSMUST00000080036.2	1	ENSMUSG00000029104	missense	H/Q	1400	Htt	ENSMUST00000080036.2:c.4200T>A	ENSMUSP00000078945.2:p.His1400Gln	H-2-Db	9	8	4	NAIQNHIRL	NAIHNHIRL	NetMHCpan	42.5	130.5	3.071	220	0.25	128.892	250.646	1.945	219.7	50.95	130.5	42.5	281.5917975	206.8330804	333.8643134	252.6794949	M1	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.252	220	34	7	0.205882353	5qB2	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr5	63806698	63806698	A	T	ENSMUST00000159584.2	1	ENSMUSG00000090061	missense	K/N	1208	Nwd2	ENSMUST00000159584.2:c.3624A>T	ENSMUSP00000124712.1:p.Lys1208Asn	H-2-Db	9	7	5	ILICNALSI	ILICKALSI	NetMHCpan	141.1	7481.9	53.026	200	0.245	238.859	9795.44	41.009	18580.86	208.18	7481.9	141.1	8762.337965	269.537999	10828.54237	322.5299134	M1	1.828571429	2.485714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.241	200	0	0	NA	5qC3.1	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr5	107821791	107821791	G	T	ENSMUST00000112642.7	1	ENSMUSG00000011831	missense	H/N	129	Evi5	ENSMUST00000112642.7:c.385C>A	ENSMUSP00000108261.1:p.His129Asn	H-2-Db	9	4	8	SASSNLSNL	SASSNLSHL	NetMHCpan	125.3	51.8	0.413	148	0.25	187.659	150.94	0.804	157.13	359.48	51.8	125.3	144.7504758	168.5077967	174.8115003	206.8092692	M1	-0.257142857	-0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.258	148	180	34	0.188888889	5qF	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr5	44014873	44014873	T	G	ENSMUST00000074113.12	1	ENSMUSG00000029086	missense	N/T	601	Prom1	ENSMUST00000074113.12:c.1802A>C	ENSMUSP00000073751.6:p.Asn601Thr	H-2-Db	9	11	1	TLNVNIDSI	NLNVNIDSI	SMMPMBEC	207.286	305.893	1.476	113	0.168	238.984	443.405	1.855	575.91	397.55	623.6	227	310.8994831	250.9689537	305.8933249	207.2860138	M1	0.271428571	0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.177	113	0	0	NA	5qB3	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.803969474	sgMsh2	cell line
chr5	57721359	57721359	T	C	ENSMUST00000191837.5	1	ENSMUSG00000029108	missense	L/S	752	Pcdh7	ENSMUST00000191837.5:c.2255T>C	ENSMUSP00000142319.1:p.Leu752Ser	H-2-Kb	8	5	7	RNISYTSL	RNISYTLL	NetMHC	17.31	17.09	0.987	215	0.2	37.571	44.968	1.197	17.09	17.31	18.2	19.2	71.73646964	55.94225905	78.83879904	59.94321055	M1	0.171428571	0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.203	215	45	0	0	5qC1	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.922066685	sgMsh2	cell line
chr5	124755780	124755780	T	C	ENSMUST00000058440.11	5	ENSMUSG00000038011	missense	F/S	916	Dnah10	ENSMUST00000058440.11:c.2747T>C	ENSMUSP00000062995.8:p.Phe916Ser	H-2-Kb	8	8	4	VSLSRFPV	VSLFRFPV	NetMHC	27.04	29.84	1.104	69	0.232	125.607	112.13	0.893	29.84	27.04	28.7	48.1	194.4195797	211.7093311	198.4906254	203.114066	M1	0.442857143	0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.266	69	0	0	NA	5qF	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr5	122941048	122941048	T	C	ENSMUST00000046073.15	1	ENSMUSG00000029475	missense	T/A	287	Kdm2b	ENSMUST00000046073.15:c.859A>G	ENSMUSP00000038229.9:p.Thr287Ala	H-2-Kb	8	6	6	IHAVYAPV	IHAVYTPV	NetMHC	32.72	149.66	4.574	57	0.263	68.188	174.831	2.564	149.66	32.72	167.8	91.6	181.861178	63.64144033	212.1973715	72.73442335	M1	0.842857143	0.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.27	57	11	3	0.272727273	5qF	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr5	110277756	110277756	A	G	ENSMUST00000031472.11	1	ENSMUSG00000029499	missense	F/L	138	Pxmp2	ENSMUST00000031472.11:c.412T>C	ENSMUSP00000031472.5:p.Phe138Leu	H-2-Kb	8	8	4	VSVLVAKM	VSVFVAKM	NetMHC	116.68	141.33	1.211	88	0.273	223.541	229.414	1.026	141.33	116.68	47.9	183	323.3999884	288.2305431	317.4972734	264.0827294	M1	1.6	1.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.3	88	5	1	0.2	5qF	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr5	86538011	86538011	T	C	ENSMUST00000116553.8	1	ENSMUSG00000048764	missense	M/V	166	Tmprss11f	ENSMUST00000116553.8:c.496A>G	ENSMUSP00000112252.2:p.Met166Val	H-2-Kb	8	9	3	ISVPSFSL	ISMPSFSL	NetMHCpan	102.9	36.1	0.351	113	0.248	207.483	135.317	0.652	55.98	137.8	36.1	102.9	214.6545013	277.1660292	219.1492557	335.5366776	M1	0.971428571	1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.252	113	0	0	NA	5qE1	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr5	137302934	137302934	TG	T	ENSMUST00000040873.11	5	ENSMUSG00000037364	FS	Q/X	77	Srrt	ENSMUST00000040873.11:c.229del	ENSMUSP00000043123.7:p.Gln77ArgfsTer72	H-2-Kb	8	28	0	VAMTCPML	NA	NetMHCpan	141.7	NA	NA	34	0.324	219.669	NA	NA	NA	160.25	NA	141.7	NA	340.9887101	NA	279.0872523	M1	1.371428571	1.428571429	FALSE	FALSE	FALSE	1	FALSE	0	Strelka2;Vardict	2	0.3235	34	78	3	0.038461538	5qG2	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr5	109086534	109086534	T	G	ENSMUST00000095922.4	5	ENSMUSG00000090688	missense	K/T	604	Vmn2r12	ENSMUST00000095922.4:c.1811A>C	ENSMUSP00000093612.3:p.Lys604Thr	H-2-Kb	8	10	2	VTYKDTPI	VKYKDTPI	SMMPMBEC	179.779	1032.143	5.741	431	0.241	209.135	2376.682	11.364	3592.61	206.56	4454.8	252.5	1160.753495	211.7093311	1032.143305	179.7794304	M1	-1.028571429	-1.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.241	431	0	0	NA	5qF	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr5	143373198	143373198	CA	C	ENSMUST00000110733.8	1	ENSMUSG00000010825	FS	A/X	252	Grid2ip	ENSMUST00000110733.8:c.757del	ENSMUSP00000106361.2:p.Thr253ProfsTer66	H-2-Kb	8	51	0	LSCLAARL	NA	SMMPMBEC	117.69	NA	NA	47	0.255	231.458	NA	NA	NA	310.25	NA	703.1	NA	152.6651821	NA	117.6901185	M1	1.2	1.2	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.282	47	0	0	NA	5qG2	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr5	34848948	34848948	T	A	ENSMUST00000080036.2	1	ENSMUSG00000029104	missense	H/Q	1400	Htt	ENSMUST00000080036.2:c.4200T>A	ENSMUSP00000078945.2:p.His1400Gln	H-2-Kb	8	9	3	AIQNHIRL	AIHNHIRL	SMM	233.206	203.582	0.873	220	0.25	335.761	210.611	0.627	187.86	352.56	450.7	1017.2	203.5822922	233.2061504	217.6406428	318.9627742	M1	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.252	220	34	7	0.205882353	5qB2	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr5	123758488	123758488	A	G	ENSMUST00000031366.11	1	ENSMUSG00000029414	missense	N/D	138	Kntc1	ENSMUST00000031366.11:c.412A>G	ENSMUSP00000031366.7:p.Asn138Asp	H-2-Kb	8	5	7	SQRTYRDL	SQRTYRNL	SMM	239.74	37.217	0.155	150	0.447	352.064	42.914	0.122	25.66	412.56	218.3	1756.2	37.21688324	239.7397234	48.61160944	291.5680954	M1	-2.028571429	-2.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.446	150	38	12	0.315789474	5qF	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr5	143373198	143373198	CA	C	ENSMUST00000110733.8	1	ENSMUSG00000010825	FS	A/X	252	Grid2ip	ENSMUST00000110733.8:c.757del	ENSMUSP00000106361.2:p.Thr253ProfsTer66	H-2-Kb	8	17	0	VALALGVL	NA	SMM	226.851	NA	NA	47	0.255	270.856	NA	NA	NA	422.56	NA	272.1	NA	226.8506354	NA	269.6124854	M1	2.685714286	2.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.282	47	0	0	NA	5qG2	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr5	87694728	87694728	C	T	ENSMUST00000197422.4	1	ENSMUSG00000063157	missense	A/T	147	Csn2	ENSMUST00000197422.4:c.439G>A	ENSMUSP00000143341.1:p.Ala147Thr	H-2-Kb	8	9	3	SLTSLANL	SLASLANL	SMM	381.716	341.775	0.895	152	0.408	487.6	375.638	0.77	720.32	664.91	348.8	569	341.7747702	381.7156799	402.476011	406.2000757	M1	1.171428571	1.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.411	152	0	0	NA	5qE1	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr5	101944143	101944143	T	A	ENSMUST00000053177.13	1	ENSMUSG00000043940	missense	K/N	443	Wdfy3	ENSMUST00000053177.13:c.1329A>T	ENSMUSP00000052607.7:p.Lys443Asn	H-2-Kb	9	8	4	VQNNYFEML	VQNKYFEML	NetMHC	62.66	107.77	1.72	139	0.324	165.336	170.625	1.032	107.77	62.66	106.6	107.7	272.3391013	275.4926395	233.4801695	222.9718309	M1	-0.471428571	-0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.303	139	30	11	0.366666667	5qE5	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr5	52848016	52848016	A	G	ENSMUST00000031072.13	1	ENSMUSG00000029176	missense	Q/R	301	Anapc4	ENSMUST00000031072.13:c.902A>G	ENSMUSP00000031072.7:p.Gln301Arg	H-2-Kb	9	9	3	SVRDEFMHL	SVQDEFMHL	NetMHCpan	107.4	185.5	1.727	32	0.406	228.321	411.963	1.804	155.92	116.93	185.5	107.4	638.4251688	339.7113053	843.82036	474.5150595	M1	-0.885714286	-0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.401	32	156	42	0.269230769	5qC1	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr5	137758482	137758482	TG	T	ENSMUST00000110985.1	2	ENSMUSG00000029723	FS	L/X	57	Tsc22d4	ENSMUST00000110985.1:c.177del	ENSMUSP00000106613.1:p.Pro60GlnfsTer18	H-2-Kb	9	22	0	VGWTKAFSL	NA	NetMHCpan	103.3	NA	NA	61	0.443	321.493	NA	NA	NA	216.16	NA	103.3	NA	472.1826226	NA	426.8251484	M1	0.3	0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.454	61	1	0	0	5qG2	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr5	101944090	101944090	T	C	ENSMUST00000053177.13	1	ENSMUSG00000043940	missense	K/R	461	Wdfy3	ENSMUST00000053177.13:c.1382A>G	ENSMUSP00000052607.7:p.Lys461Arg	H-2-Kb	9	5	7	LNYIPCREL	LNYIPCKEL	NetMHCpan	162.8	323.2	1.985	148	0.257	262.115	363.046	1.385	484.84	218.66	323.2	162.8	341.2793414	305.5694975	384.8132346	375.1889162	M1	-0.014285714	-0.014285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	148	40	13	0.325	5qE5	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr5	124755780	124755780	T	C	ENSMUST00000058440.11	5	ENSMUSG00000038011	missense	F/S	916	Dnah10	ENSMUST00000058440.11:c.2747T>C	ENSMUSP00000062995.8:p.Phe916Ser	H-2-Kb	9	8	4	VSLSRFPVA	VSLFRFPVA	SMMPMBEC	213.919	176.299	0.824	69	0.232	226.366	215.523	0.952	339.88	251.74	166.5	220.4	254.7475407	232.3325184	176.2990613	213.9193154	M1	0.814285714	0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.266	69	0	0	NA	5qF	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr5	147315169	147315169	T	C	ENSMUST00000100433.4	1	ENSMUSG00000075543	missense	S/G	158	Urad	ENSMUST00000100433.4:c.472A>G	ENSMUSP00000098000.3:p.Ser158Gly	H-2-Kb	9	10	2	IGHLRLTDL	ISHLRLTDL	NetMHC	322.75	98.24	0.304	67	0.209	388.562	137.299	0.353	98.24	322.75	151.5	451.1	159.261206	457.2039776	123.0977174	326.0243217	M1	-0.071428571	0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.225	67	0	0	NA	5qG3	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr5	57721359	57721359	T	C	ENSMUST00000191837.5	1	ENSMUSG00000029108	missense	L/S	752	Pcdh7	ENSMUST00000191837.5:c.2255T>C	ENSMUSP00000142319.1:p.Leu752Ser	H-2-Kb	9	7	5	ISYTSLPPS	ISYTLLPPS	SMM	151.743	109.172	0.719	215	0.2	424.609	273.635	0.644	451.89	632.75	392.3	624.7	109.1716816	151.7434661	154.9708446	224.5173978	M1	-0.428571429	0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.203	215	45	0	0	5qC1	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.922066685	sgMsh2	cell line
chr6	57600007	57600007	T	C	ENSMUST00000031817.9	1	ENSMUSG00000029798	missense	L/P	235	Herc6	ENSMUST00000031817.9:c.704T>C	ENSMUSP00000031817.8:p.Leu235Pro	H-2-Db	9	6	6	GALKNPSVI	GALKNLSVI	NetMHC	13.46	7.99	0.594	146	0.288	47.099	27.26	0.579	7.99	13.46	16.8	37.5	48.2636319	70.24574131	37.71985373	56.6982951	M1	0.385714286	0.385714286	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.285	146	15	7	0.466666667	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr6	107567567	107567567	A	G	ENSMUST00000049285.9	1	ENSMUSG00000034648	missense	N/D	109	Lrrn1	ENSMUST00000049285.9:c.325A>G	ENSMUSP00000037096.8:p.Asn109Asp	H-2-Db	9	4	8	FSQNNFTDI	FSQNNFTNI	NetMHC	98.08	74.23	0.757	187	0.16	115.299	90.521	0.785	74.23	98.08	73.3	114.3	106.8119884	136.3389673	112.3492041	116.2973985	M1	-1.057142857	-0.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.167	187	0	0	NA	6qE1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.75854747	sgMsh2	cell line
chr6	42286884	42286884	TG	T	ENSMUST00000031894.12	1	ENSMUSG00000029862	FS	G/X	40	Clcn1	ENSMUST00000031894.12:c.122del	ENSMUSP00000031894.6:p.Gly41AlafsTer70	H-2-Db	9	65	0	TTILNVKTV	NA	NetMHCpan	370.5	NA	NA	71	0.169	457.664	NA	NA	NA	742.55	NA	370.5	NA	495.0168702	NA	420.3102682	M1	1.228571429	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.178	71	0	0	NA	6qB2.1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.808511674	sgMsh2	cell line
chr6	66612495	66612495	GA	G	ENSMUST00000227418.1	NA	ENSMUSG00000059375	FS	F/X	25	Vmn1r33	ENSMUST00000227418.1:c.74del	ENSMUSP00000153840.1:p.Phe25SerfsTer5	H-2-Kb	8	6	6	IFLLFSTL	IFLLFFYT	SMM	9.767	162.458	16.634	248	0.165	11.025	714.944	64.849	1267.43	10.68	4267.2	18.9	162.4575876	9.766523514	121.2662646	11.36946424	M1	2.214285714	2.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.164	248	0	0	NA	6qC1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.744920869	sgMsh2	cell line
chr6	13193189	13193189	T	C	ENSMUST00000054530.6	1	ENSMUSG00000079679	missense	T/A	384	Vwde	ENSMUST00000054530.6:c.1150A>G	ENSMUSP00000058110.5:p.Thr384Ala	H-2-Kb	8	6	6	AVLYYAAV	AVLYYTAV	NetMHC	18.5	70.64	3.818	106	0.236	51.667	133.063	2.575	70.64	18.5	72.6	37	198.0341096	69.30107956	193.5263029	66.33458249	M1	1.885714286	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.245	106	0	0	NA	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr6	114302629	114302629	A	G	ENSMUST00000032454.7	1	ENSMUSG00000030310	missense	K/R	123	Slc6a1	ENSMUST00000032454.7:c.368A>G	ENSMUSP00000032454.5:p.Lys123Arg	H-2-Kb	8	6	6	LAPMFRGV	LAPMFKGV	NetMHC	85.05	307.58	3.616	142	0.155	326.028	633.35	1.943	307.58	85.05	408.2	184.6	1126.522836	545.4312289	858.499408	467.4552051	M1	0.6	0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.164	142	0	0	NA	6qE3	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.744920869	sgMsh2	cell line
chr6	35270381	35270381	A	G	ENSMUST00000031868.4	1	ENSMUSG00000029843	missense	I/T	568	Slc13a4	ENSMUST00000031868.4:c.1703T>C	ENSMUSP00000031868.4:p.Ile568Thr	H-2-Kb	8	11	1	TVFSYGHC	IVFSYGHC	SMMPMBEC	126.398	45.787	0.362	161	0.242	145.752	48.403	0.332	38.66	171.24	51.8	148.7	51.01994663	142.8038776	45.7867692	126.3979412	M1	0.542857143	0.542857143	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.238	161	1	1	1	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr6	30815960	30815960	A	G	ENSMUST00000048774.12	1	ENSMUSG00000025607	missense	V/A	480	Copg2	ENSMUST00000048774.12:c.1439T>C	ENSMUSP00000038368.6:p.Val480Ala	H-2-Kb	8	6	6	FIFNRAVL	FIFNRVVL	SMM	138.912	401.55	2.891	145	0.352	159.887	404.813	2.532	524.31	178.28	359.2	181.6	401.5503419	138.9120754	408.0750101	141.4946437	M1	1.3	1.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.333	145	146	56	0.383561644	6qA3.3	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr6	42286884	42286884	TG	T	ENSMUST00000031894.12	1	ENSMUSG00000029862	FS	G/X	40	Clcn1	ENSMUST00000031894.12:c.122del	ENSMUSP00000031894.6:p.Gly41AlafsTer70	H-2-Kb	8	28	0	TQHRYMAI	NA	NetMHC	259.42	NA	NA	71	0.169	338.138	NA	NA	NA	259.42	NA	273.8	NA	443.3431473	NA	402.476011	M1	-0.614285714	-0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.178	71	0	0	NA	6qB2.1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.808511674	sgMsh2	cell line
chr6	37986596	37986596	A	G	ENSMUST00000096040.10	1	ENSMUSG00000029830	missense	S/P	459	Svopl	ENSMUST00000096040.10:c.1375T>C	ENSMUSP00000093743.4:p.Ser459Pro	H-2-Kb	8	9	3	SAPFLGAL	SASFLGAL	NetMHCpan	144	277.8	1.929	117	0.316	357.894	799.851	2.235	422.8	276.51	277.8	144	1176.901185	439.2785529	1464.670721	606.3732022	M1	1.714285714	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.328	117	0	0	NA	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr6	69283934	69283934	TA	T	ENSMUST00000103349.1	NA	ENSMUSG00000076548	FS	Y/X	70	Igkv4-69	ENSMUST00000103349.1:c.208del	ENSMUSP00000100150.1:p.Tyr70MetfsTer26	H-2-Kb	8	25	0	VAVGLGPL	NA	NetMHC	277.12	NA	NA	485	0.167	319.498	NA	NA	NA	277.12	NA	307.3	NA	344.9371732	NA	331.6958211	M1	1.6	1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.167	485	0	0	NA	6qC1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.75854747	sgMsh2	cell line
chr6	72515320	72515320	A	G	ENSMUST00000162561.8	1	ENSMUSG00000052631	missense	V/A	181	Sh2d6	ENSMUST00000162561.8:c.542T>C	ENSMUSP00000124673.2:p.Val181Ala	H-2-Kb	8	5	7	QPFTLAAL	QPFTLAVL	SMM	136.691	321.914	2.355	92	0.12	392.013	1659.23	4.233	2868.95	584.16	4165.5	2841.1	321.9141004	136.691025	449.5106648	199.8664966	M1	1.671428571	1.671428571	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.125	92	0	0	NA	6qC1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.567775052	sgMsh2	cell line
chr6	38395159	38395159	A	G	ENSMUST00000162554.7	1	ENSMUSG00000056832	missense	N/S	228	Ttc26	ENSMUST00000162554.7:c.683A>G	ENSMUSP00000124369.1:p.Asn228Ser	H-2-Kb	8	8	4	KACSHFRL	KACNHFRL	SMMPMBEC	238.089	262.869	1.104	174	0.161	424.535	436.945	1.029	611.02	603.18	792.8	636.8	253.9451951	245.8895091	262.8693795	238.0893668	M1	0.342857143	0.342857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.153	174	16	4	0.25	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.694956664	sgMsh2	cell line
chr6	30815960	30815960	A	G	ENSMUST00000048774.12	1	ENSMUSG00000025607	missense	V/A	480	Copg2	ENSMUST00000048774.12:c.1439T>C	ENSMUSP00000038368.6:p.Val480Ala	H-2-Kb	8	4	8	IRFIFNRA	IRFIFNRV	SMMPMBEC	232.135	48.277	0.208	145	0.352	482.306	47.673	0.099	40.71	683.59	149.1	1240.7	47.06954498	281.0217928	48.27696948	232.1346655	M1	-0.085714286	0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.333	145	146	56	0.383561644	6qA3.3	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr6	13193189	13193189	T	C	ENSMUST00000054530.6	1	ENSMUSG00000079679	missense	T/A	384	Vwde	ENSMUST00000054530.6:c.1150A>G	ENSMUSP00000058110.5:p.Thr384Ala	H-2-Kb	9	5	7	QAVLYYAAV	QAVLYYTAV	NetMHC	15.98	41.44	2.593	106	0.236	75.31	108.396	1.439	41.44	15.98	80.3	48.5	136.4928808	102.1198104	174.2809827	128.0117987	M1	1.885714286	1.885714286	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.245	106	0	0	NA	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr6	37986596	37986596	A	G	ENSMUST00000096040.10	1	ENSMUSG00000029830	missense	S/P	459	Svopl	ENSMUST00000096040.10:c.1375T>C	ENSMUSP00000093743.4:p.Ser459Pro	H-2-Kb	9	8	4	MSAPFLGAL	MSASFLGAL	NetMHCpan	54.7	51.2	0.936	117	0.316	157.114	100.603	0.64	34.34	56.53	51.2	54.7	150.006473	257.6973782	231.3396105	329.0409876	M1	1.714285714	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.328	117	0	0	NA	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr6	41394716	41394716	A	G	ENSMUST00000049079.8	1	ENSMUSG00000058119	missense	N/S	32	Gm5771	ENSMUST00000049079.8:c.95A>G	ENSMUSP00000039684.7:p.Asn32Ser	H-2-Kb	9	11	1	SSVPYQVSL	NSVPYQVSL	NetMHCpan	55	427.2	7.767	395	0.142	192.657	1089.876	5.657	863.77	57.03	427.2	55	1486.312054	344.4371603	1315.982154	328.2842143	M1	0.714285714	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.142	395	0	0	NA	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.644992459	sgMsh2	cell line
chr6	66612495	66612495	GA	G	ENSMUST00000227418.1	NA	ENSMUSG00000059375	FS	F/X	25	Vmn1r33	ENSMUST00000227418.1:c.74del	ENSMUSP00000153840.1:p.Phe25SerfsTer5	H-2-Kb	9	5	7	NIFLLFSTL	NIFLLFFYT	NetMHCpan	45.1	6590.6	146.133	248	0.165	131.772	2704.993	20.528	4292.48	82.78	6590.6	45.1	997.9527977	180.7631913	1117.506351	217.3952246	M1	2.214285714	2.314285714	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;Vardict	3	0.164	248	0	0	NA	6qC1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.744920869	sgMsh2	cell line
chr6	13836280	13836280	CA	C	ENSMUST00000060442.13	1	ENSMUSG00000048216	FS	F/X	208	Gpr85	ENSMUST00000060442.13:c.624del	ENSMUSP00000053837.7:p.Phe208LeufsTer8	H-2-Kb	9	3	9	LVYLKLIFL	LVYLKLIFF	SMM	87.521	147.608	1.687	107	0.159	94.659	204.397	2.159	236.11	89.49	1543	251.3	147.6080354	87.5205423	172.683165	99.82745515	M1	1.928571429	2.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.173	107	28	4	0.142857143	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.785800672	sgMsh2	cell line
chr6	42400772	42400772	T	C	ENSMUST00000057398.3	NA	ENSMUSG00000046652	missense	Y/H	179	Tas2r143	ENSMUST00000057398.3:c.535T>C	ENSMUSP00000057910.3:p.Tyr179His	H-2-Kb	9	7	5	YYYLHHSVL	YYYLYHSVL	SMMPMBEC	83.416	66.413	0.796	219	0.119	96.73	66.576	0.688	66.74	117.85	51.9	109.3	67.46988967	84.16082809	66.41252616	83.41612282	M1	0.471428571	0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.126	219	0	0	NA	6qB2.1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.572317253	sgMsh2	cell line
chr6	56986251	56986251	TA	T	ENSMUST00000226130.1	NA	ENSMUSG00000090346	FS	K/X	304	Vmn1r5	ENSMUST00000226130.1:c.915del	ENSMUSP00000153712.1:p.Lys305AsnfsTer13	H-2-Kb	9	8	5	MYFKNMFSL	NA	NetMHCpan	167.7	NA	NA	85	0.176	332.879	NA	NA	NA	241.03	NA	167.7	NA	424.7271271	NA	436.7671833	M1	0.442857143	0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2	2	0.195	85	0	0	NA	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.885729082	sgMsh2	cell line
chr6	56986251	56986251	TA	T	ENSMUST00000226130.1	NA	ENSMUSG00000090346	FS	K/X	304	Vmn1r5	ENSMUST00000226130.1:c.915del	ENSMUSP00000153712.1:p.Lys305AsnfsTer13	H-2-Kb	9	14	0	FSLFFIKPI	NA	NetMHCpan	97.5	NA	NA	85	0.176	307.993	NA	NA	NA	243.38	NA	97.5	NA	384.6892055	NA	372.6061339	M1	1.842857143	1.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2	2	0.195	85	0	0	NA	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.885729082	sgMsh2	cell line
chr6	108380923	108380923	A	T	ENSMUST00000032192.8	1	ENSMUSG00000030102	missense	K/M	521	Itpr1	ENSMUST00000032192.8:c.1562A>T	ENSMUSP00000032192.6:p.Lys521Met	H-2-Kb	9	9	3	IFMLLQAPF	IFKLLQAPF	NetMHC	243.96	1098.72	4.504	134	0.134	381.453	1088.97	2.855	1098.72	243.96	1897.8	649.4	1079.220037	368.2222268	940.2644145	394.6844353	M1	1.285714286	2.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.143	134	12	3	0.25	6qE1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.64953466	sgMsh2	cell line
chr6	57258876	57258876	T	C	ENSMUST00000228297.1	NA	ENSMUSG00000115199	missense	V/A	243	Vmn1r15	ENSMUST00000228297.1:c.728T>C	ENSMUSP00000154252.1:p.Val243Ala	H-2-Kb	9	5	7	FVVMYWADF	FVVMYWVDF	NetMHC	306.14	761.72	2.488	268	0.175	379.005	706.007	1.863	761.72	306.14	3331.3	836.6	650.2943789	450.9309038	416.1500968	307.0789168	M1	0.714285714	1.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.173	268	0	0	NA	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.785800672	sgMsh2	cell line
chr6	42286884	42286884	TG	T	ENSMUST00000031894.12	1	ENSMUSG00000029862	FS	G/X	40	Clcn1	ENSMUST00000031894.12:c.122del	ENSMUSP00000031894.6:p.Gly41AlafsTer70	H-2-Kb	9	60	0	TAWMRTTIL	NA	NetMHCpan	157.5	NA	NA	71	0.169	221.615	NA	NA	NA	328.86	NA	157.5	NA	251.2522734	NA	191.9773533	M1	0.485714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.178	71	0	0	NA	6qB2.1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.808511674	sgMsh2	cell line
chr6	57258876	57258876	T	C	ENSMUST00000228297.1	NA	ENSMUSG00000115199	missense	V/A	243	Vmn1r15	ENSMUST00000228297.1:c.728T>C	ENSMUSP00000154252.1:p.Val243Ala	H-2-Kb	9	7	5	VMYWADFII	VMYWVDFII	SMM	154.565	218.328	1.413	268	0.175	312.379	430.03	1.377	602.28	395.01	1029	537.3	218.3282833	154.5645878	257.7804634	229.7470798	M1	1.128571429	1.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.173	268	0	0	NA	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.785800672	sgMsh2	cell line
chr7	26611187	26611187	T	C	ENSMUST00000228367.1	NA	ENSMUSG00000091924	missense	M/V	298	Vmn1r185	ENSMUST00000228367.1:c.892A>G	ENSMUSP00000154816.1:p.Met298Val	H-2-Db	9	8	4	YSLVSRFNL	YSLMSRFNL	NetMHC	136.82	215.91	1.578	131	0.389	299.155	452.516	1.513	215.91	136.82	303	280.9	602.0325877	317.4095578	657.007005	372.8807814	M1	0.828571429	0.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.382	131	0	0	NA	7qA3	chr7-21035564-62476997	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	19260993	19260993	TG	T	ENSMUST00000032561.8	1	ENSMUSG00000030403	FS	P/X	180	Vasp	ENSMUST00000032561.8:c.539del	ENSMUSP00000032561.8:p.Pro180HisfsTer55	H-2-Db	9	36	0	HSLQHRAPI	NA	NetMHC	144.13	NA	NA	9	0.444	208.429	NA	NA	NA	144.13	NA	277.9	NA	242.4487783	NA	174.409445	M1	-0.385714286	-0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.4444	9	79	1	0.012658228	7qA3	chr7-3489139-20073487	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	25272796	25272796	A	G	ENSMUST00000169266.7	1	ENSMUSG00000005442	missense	I/V	651	Cic	ENSMUST00000169266.7:c.1951A>G	ENSMUSP00000132351.1:p.Ile651Val	H-2-Db	10	2	10	FSPINASPVV	FSPINASPVI	NetMHC	14.9	8.41	0.564	42	0.429	465.206	229.143	0.493	8.41	14.9	34.4	92.4	423.8869047	838.0115415	542.8376978	1013.141255	M1	1.257142857	1.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.421	42	27	6	0.222222222	7qA3	chr7-21035564-62476997	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	19643130	19643130	A	C	ENSMUST00000055242.10	1	ENSMUSG00000002981	missense	F/V	170	Clptm1	ENSMUST00000055242.10:c.508T>G	ENSMUSP00000051293.9:p.Phe170Val	H-2-Kb	8	4	8	SIYIHVYV	SIYIHVYF	NetMHC	15.47	62.57	4.045	124	0.242	41.881	121.629	2.904	62.57	15.47	80.8	57.4	162.4575876	35.70590129	166.6249377	48.05515695	M1	1.657142857	1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	124	184	37	0.201086957	7qA3	chr7-3489139-20073487	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr6	134451069	134451069	T	C	ENSMUST00000032322.14	1	ENSMUSG00000030201	missense	Y/C	1520	Lrp6	ENSMUST00000032322.14:c.4559A>G	ENSMUSP00000032322.8:p.Tyr1520Cys	H-2-Kb	8	4	8	RSYSYRPC	RSYSYRPY	NetMHC	22.95	107.06	4.665	90	0.2	38.31	109.727	2.864	107.06	22.95	418.8	63.3	112.3931906	35.05419514	72.90209351	41.56616909	M1	-1.114285714	-1.114285714	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.219	90	84	18	0.214285714	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.994741892	sgMsh2	cell line
chr7	4664738	4664738	A	G	ENSMUST00000079970.5	1	ENSMUSG00000063802	missense	L/P	252	Hspbp1	ENSMUST00000079970.5:c.755T>C	ENSMUSP00000078886.4:p.Leu252Pro	H-2-Kb	8	7	5	SAFLPQNL	SAFLLQNL	NetMHC	32.85	8.01	0.244	54	0.222	63.485	20.561	0.324	8.01	32.85	12.1	53.9	29.02284617	73.07015019	38.34775994	109.0787117	M1	0.514285714	0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	54	63	14	0.222222222	7qA1	chr7-3489139-20073487	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.908440084	sgMsh2	cell line
chr7	28320255	28320255	A	G	ENSMUST00000209141.1	1	ENSMUSG00000003435	missense	F/L	497	Supt5	ENSMUST00000209141.1:c.1489T>C	ENSMUSP00000147164.1:p.Phe497Leu	H-2-Kb	8	11	1	LVILFSDL	FVILFSDL	NetMHCpan	33.8	63.7	1.885	91	0.33	68.106	75.272	1.105	40.58	34.18	63.7	33.8	93.70008827	130.2386842	86.84403626	102.0328459	M1	2.114285714	2.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.322	91	120	37	0.308333333	7qA3	chr7-21035564-62476997	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	6461136	6461136	T	C	ENSMUST00000214301.2	5	ENSMUSG00000048620	missense	V/A	209	Olfr1336	ENSMUST00000214301.2:c.626T>C	ENSMUSP00000150162.1:p.Val209Ala	H-2-Kb	8	10	2	IAILWGSL	IVILWGSL	NetMHCpan	26.7	38.1	1.427	283	0.247	48.129	52.985	1.101	49.64	35.34	38.1	26.7	82.36448742	81.04757034	56.33003227	60.91720937	M1	1.685714286	1.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.251	283	0	0	NA	7qA1	chr7-3489139-20073487	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr6	141532679	141532679	A	G	ENSMUST00000032362.11	1	ENSMUSG00000030235	missense	K/R	56	Slco1c1	ENSMUST00000032362.11:c.167A>G	ENSMUSP00000032362.9:p.Lys56Arg	H-2-Kb	8	4	8	LSFVYFAR	LSFVYFAK	NetMHC	71.6	273.33	3.817	144	0.132	97.337	165.283	1.698	273.33	71.6	241.7	126.8	88.86689373	86.84403626	56.4598864	107.830098	M1	0.714285714	1.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.143	144	0	0	NA	6qG2	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.64953466	sgMsh2	cell line
chr6	141532679	141532679	A	G	ENSMUST00000032362.11	1	ENSMUSG00000030235	missense	K/R	56	Slco1c1	ENSMUST00000032362.11:c.167A>G	ENSMUSP00000032362.9:p.Lys56Arg	H-2-Kb	8	5	7	SFVYFARA	SFVYFAKA	NetMHC	104.42	421.4	4.036	144	0.132	172.62	538.576	3.12	421.4	104.42	215.7	105.5	804.8964279	281.6696149	655.752568	239.7397234	M1	1.085714286	1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.143	144	0	0	NA	6qG2	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.64953466	sgMsh2	cell line
chr6	141532679	141532679	A	G	ENSMUST00000032362.11	1	ENSMUSG00000030235	missense	K/R	56	Slco1c1	ENSMUST00000032362.11:c.167A>G	ENSMUSP00000032362.9:p.Lys56Arg	H-2-Kb	8	6	6	FVYFARAL	FVYFAKAL	NetMHCpan	53.9	100.9	1.872	144	0.132	100.957	211.274	2.093	281	106.91	100.9	53.9	196.218522	95.00358634	226.3288934	123.2366829	M1	1.228571429	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.143	144	0	0	NA	6qG2	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.64953466	sgMsh2	cell line
chr7	4469203	4469203	GA	G	ENSMUST00000163893.7	1	ENSMUSG00000006154	FS	R/X	22	Eps8l1	ENSMUST00000163893.7:c.69del	ENSMUSP00000125840.1:p.Lys23AsnfsTer56	H-2-Kb	8	6	7	SIYEQRNV	SIYEQRKR	SMM	80.305	2021.808	25.177	162	0.228	140.518	10629.403	75.645	16431.11	121.91	19443.2	292.4	2021.808416	80.30452175	4827.696948	159.1255801	M1	-1.085714286	-1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.248	162	0	0	NA	7qA1	chr7-3489139-20073487	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr6	134451076	134451076	T	C	ENSMUST00000032322.14	1	ENSMUSG00000030201	missense	R/G	1518	Lrp6	ENSMUST00000032322.14:c.4552A>G	ENSMUSP00000032322.8:p.Arg1518Gly	H-2-Kb	8	6	6	RSYSYGPY	RSYSYRPY	SMMPMBEC	72.902	72.902	1	92	0.207	122.156	109.727	0.898	107.06	123.88	418.8	436.7	112.3931906	120.4314735	72.90209351	72.90209351	M1	-1.071428571	-1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.232	92	82	18	0.219512195	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr6	134451069	134451069	T	C	ENSMUST00000032322.14	1	ENSMUSG00000030201	missense	Y/C	1520	Lrp6	ENSMUST00000032322.14:c.4559A>G	ENSMUSP00000032322.8:p.Tyr1520Cys	H-2-Kb	8	11	1	CSYRHFAP	YSYRHFAP	NetMHC	134.9	77.72	0.576	90	0.2	195.012	134.543	0.69	77.72	134.9	80.4	161.6	188.68614	228.4230889	247.5939338	382.5956254	M1	-0.971428571	-0.385714286	TRUE	FALSE	TRUE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.219	90	84	18	0.214285714	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.994741892	sgMsh2	cell line
chr7	26611187	26611187	T	C	ENSMUST00000228367.1	NA	ENSMUSG00000091924	missense	M/V	298	Vmn1r185	ENSMUST00000228367.1:c.892A>G	ENSMUSP00000154816.1:p.Met298Val	H-2-Kb	8	4	8	FMRSYSLV	FMRSYSLM	NetMHC	238.94	166.52	0.697	131	0.389	450.026	344.108	0.765	166.52	238.94	202.1	466.8	486.1160944	433.2514252	558.1359543	516.1072977	M1	0.357142857	0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.382	131	0	0	NA	7qA3	chr7-21035564-62476997	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr6	123815817	123815817	T	C	ENSMUST00000075095.6	5	ENSMUSG00000072780	missense	M/T	701	Vmn2r24	ENSMUST00000075095.6:c.2102T>C	ENSMUSP00000074602.5:p.Met701Thr	H-2-Kb	8	6	6	QMWMVTRL	QMWMVMRL	NetMHC	249.67	165.69	0.664	532	0.177	456.149	439.641	0.964	165.69	249.67	358.4	310.1	520.8827797	666.4076901	533.0156983	602.1989584	M1	0.814285714	0.814285714	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.175	532	0	0	NA	6qF2	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.794885073	sgMsh2	cell line
chr6	116582023	116582023	AT	A	ENSMUST00000061723.5	NA	ENSMUSG00000050654	FS	I/X	308	Olfr215	ENSMUST00000061723.5:c.922del	ENSMUSP00000052425.4:p.Ile308TyrfsTer42	H-2-Kb	8	26	0	RNCVFSIL	NA	SMM	163.584	NA	NA	113	0.115	193.858	NA	NA	NA	268.72	NA	202.9	NA	163.5836898	NA	184.8161845	M1	1.928571429	1.928571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.133	113	0	0	NA	6qE3	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.604112656	sgMsh2	cell line
chr7	13028552	13028552	C	A	ENSMUST00000005705.7	1	ENSMUSG00000005566	missense	L/M	368	Trim28	ENSMUST00000005705.7:c.1102C>A	ENSMUSP00000005705.7:p.Leu368Met	H-2-Kb	8	9	3	KKMIYFQL	KKLIYFQL	SMMPMBEC	242.516	183.967	0.759	96	0.292	424.719	506.319	1.192	828.67	832.15	1033.4	533.4	183.9670312	316.0385059	183.9670312	242.5157786	M1	0.614285714	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.312	96	533	133	0.249530957	7qA1	chr7-3489139-20073487	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr6	141532679	141532679	A	G	ENSMUST00000032362.11	1	ENSMUSG00000030235	missense	K/R	56	Slco1c1	ENSMUST00000032362.11:c.167A>G	ENSMUSP00000032362.9:p.Lys56Arg	H-2-Kb	9	4	8	LSFVYFARA	LSFVYFAKA	NetMHC	8.07	18.23	2.259	144	0.132	41.355	63.038	1.524	18.23	8.07	19.6	12.2	162.2220929	88.94263671	106.4755765	70.50988397	M1	1.085714286	1.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.143	144	0	0	NA	6qG2	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.64953466	sgMsh2	cell line
chr7	26611187	26611187	T	C	ENSMUST00000228367.1	NA	ENSMUSG00000091924	missense	M/V	298	Vmn1r185	ENSMUST00000228367.1:c.892A>G	ENSMUSP00000154816.1:p.Met298Val	H-2-Kb	9	11	1	VSRFNLAHL	MSRFNLAHL	NetMHC	34.25	88.62	2.587	131	0.389	91.603	217.283	2.372	88.62	34.25	130.4	64.6	304.1655332	118.6069123	327.5291816	126.5464598	M1	0.142857143	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.382	131	0	0	NA	7qA3	chr7-21035564-62476997	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr6	134520435	134520435	A	C	ENSMUST00000032322.14	1	ENSMUSG00000030201	missense	L/R	203	Lrp6	ENSMUST00000032322.14:c.608T>G	ENSMUSP00000032322.8:p.Leu203Arg	H-2-Kb	9	11	1	RNFIHKSNL	LNFIHKSNL	NetMHCpan	24.8	15.1	0.609	189	0.19	96.035	60.832	0.633	39.77	43.78	15.1	24.8	87.5205423	148.2893631	81.893607	152.4930322	M1	-0.042857143	-0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.202	189	112	16	0.142857143	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.917524484	sgMsh2	cell line
chr7	6461136	6461136	T	C	ENSMUST00000214301.2	5	ENSMUSG00000048620	missense	V/A	209	Olfr1336	ENSMUST00000214301.2:c.626T>C	ENSMUSP00000150162.1:p.Val209Ala	H-2-Kb	9	10	2	IAILWGSLL	IVILWGSLL	NetMHC	79.58	110.35	1.387	283	0.247	134.3	179.951	1.34	110.35	79.58	151.4	83.2	208.5018919	185.4001153	225.0349638	194.6480243	M1	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.251	283	0	0	NA	7qA1	chr7-3489139-20073487	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	26611187	26611187	T	C	ENSMUST00000228367.1	NA	ENSMUSG00000091924	missense	M/V	298	Vmn1r185	ENSMUST00000228367.1:c.892A>G	ENSMUSP00000154816.1:p.Met298Val	H-2-Kb	9	3	9	VFMRSYSLV	VFMRSYSLM	NetMHC	86.79	66.95	0.771	131	0.389	195.423	101.978	0.522	66.95	86.79	103.7	265	100.2559138	171.4391481	132.8158787	219.4067579	M1	0.357142857	0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.382	131	0	0	NA	7qA3	chr7-21035564-62476997	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr6	141532679	141532679	A	G	ENSMUST00000032362.11	1	ENSMUSG00000030235	missense	K/R	56	Slco1c1	ENSMUST00000032362.11:c.167A>G	ENSMUSP00000032362.9:p.Lys56Arg	H-2-Kb	9	5	7	SFVYFARAL	SFVYFAKAL	NetMHC	90.76	210.98	2.325	144	0.132	303.576	377.92	1.245	210.98	90.76	211.2	119.5	544.6405843	487.6519891	802.1396792	782.0778752	M1	1.228571429	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.143	144	0	0	NA	6qG2	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.64953466	sgMsh2	cell line
chr6	134451069	134451069	T	C	ENSMUST00000032322.14	1	ENSMUSG00000030201	missense	Y/C	1520	Lrp6	ENSMUST00000032322.14:c.4559A>G	ENSMUSP00000032322.8:p.Tyr1520Cys	H-2-Kb	9	11	1	CSYRHFAPP	YSYRHFAPP	SMM	43.965	47.985	1.091	90	0.2	101.949	75.581	0.741	74.91	111.8	101.8	153.6	47.9854973	43.96529586	76.25178243	92.09795777	M1	-1.085714286	-0.385714286	TRUE	FALSE	TRUE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.219	90	84	18	0.214285714	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.994741892	sgMsh2	cell line
chr7	4664738	4664738	A	G	ENSMUST00000079970.5	1	ENSMUSG00000063802	missense	L/P	252	Hspbp1	ENSMUST00000079970.5:c.755T>C	ENSMUSP00000078886.4:p.Leu252Pro	H-2-Kb	9	7	5	SAFLPQNLL	SAFLLQNLL	NetMHC	141.98	64.62	0.455	54	0.222	187.422	95.704	0.511	64.62	141.98	78.4	222.4	113.0082111	152.4438821	169.531342	289.9011913	M1	0.8	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	54	63	14	0.222222222	7qA1	chr7-3489139-20073487	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.908440084	sgMsh2	cell line
chr7	26611187	26611187	T	C	ENSMUST00000228367.1	NA	ENSMUSG00000091924	missense	M/V	298	Vmn1r185	ENSMUST00000228367.1:c.892A>G	ENSMUSP00000154816.1:p.Met298Val	H-2-Kb	9	6	6	RSYSLVSRF	RSYSLMSRF	NetMHCpan	141.6	108.4	0.766	131	0.389	189.696	134.173	0.707	111.27	145.45	108.4	141.6	157.0760603	233.9429705	198.2668013	302.8656361	M1	0.485714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.382	131	0	0	NA	7qA3	chr7-21035564-62476997	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	35487692	35487692	GT	G	ENSMUST00000193633.5	5	ENSMUSG00000030491	FS	N/X	591	Tdrd12	ENSMUST00000193633.5:c.1772del	ENSMUSP00000141796.2:p.Asn591ThrfsTer15	H-2-Kb	9	16	0	SGSLHHTRL	NA	NetMHC	243.23	NA	NA	25	0.52	463.888	NA	NA	NA	243.23	NA	341.3	NA	719.6312263	NA	586.4756699	M1	-0.685714286	-0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.561	25	0	0	NA	7qB2	chr7-21035564-62476997	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr6	122464160	122464160	A	G	ENSMUST00000068242.8	1	ENSMUSG00000040649	missense	V/A	75	Rimklb	ENSMUST00000068242.8:c.224T>C	ENSMUSP00000064467.6:p.Val75Ala	H-2-Kb	9	4	8	SAYPQVVAV	SAYPQVVVV	NetMHCpan	248.3	591.8	2.383	118	0.119	417.104	800.168	1.918	840.03	265.21	591.8	248.3	801.8811416	568.9970306	798.4541822	644.5401859	M1	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.131	118	0	0	NA	6qF1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.595028255	sgMsh2	cell line
chr6	134484391	134484391	T	G	ENSMUST00000032322.14	1	ENSMUSG00000030201	missense	E/A	701	Lrp6	ENSMUST00000032322.14:c.2102A>C	ENSMUSP00000032322.8:p.Glu701Ala	H-2-Kb	9	4	8	SALEHVVAF	SALEHVVEF	NetMHC	346.5	552.55	1.595	187	0.342	444.167	549.223	1.237	552.55	346.5	572.2	399.4	545.8961105	515.3591605	539.8212792	488.9337312	M1	1.442857143	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.355	187	141	41	0.290780142	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr6	123815817	123815817	T	C	ENSMUST00000075095.6	5	ENSMUSG00000072780	missense	M/T	701	Vmn2r24	ENSMUST00000075095.6:c.2102T>C	ENSMUSP00000074602.5:p.Met701Thr	H-2-Kb	9	8	4	WMVTRLSNV	WMVMRLSNV	SMMPMBEC	371.749	308.496	0.83	532	0.177	393.346	326.071	0.829	273.51	374.49	1055.2	1159.9	343.6449768	412.2019102	308.4963287	371.7491635	M1	0.385714286	0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.175	532	0	0	NA	6qF2	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.794885073	sgMsh2	cell line
chr6	129583140	129583140	A	G	ENSMUST00000053708.8	1	ENSMUSG00000050241	missense	Y/C	125	Klre1	ENSMUST00000053708.8:c.374A>G	ENSMUSP00000055779.6:p.Tyr125Cys	H-2-Kb	9	4	8	VWFRCSCCF	VWFRCSCYF	SMM	187.116	103.302	0.552	141	0.369	339.266	180.202	0.531	161.68	383.92	666	1725.7	103.3023021	187.1156015	198.7238535	294.6117067	M1	1.114285714	1.114285714	FALSE	FALSE	FALSE	3	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.356	141	0	0	NA	6qF3	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	10714379	10714379	C	A	ENSMUST00000117413.8	1	ENSMUSG00000034087	missense	L/M	170	Nlrp4b	ENSMUST00000117413.8:c.508C>A	ENSMUSP00000113095.1:p.Leu170Met	H-2-Kb	9	3	9	LMIVWSEGM	LMIVWSEGL	SMM	279.969	212.868	0.76	149	0.282	469.782	287.122	0.611	269.98	527.23	374.6	681.3	212.8678139	279.9690348	304.2636004	412.3348098	M1	0.714285714	1.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.269	149	0	0	NA	7qA1	chr7-3489139-20073487	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	7334434	7334434	GT	G	ENSMUST00000072475.8	5	ENSMUSG00000070847	FS	T/X	68	Vmn2r30	ENSMUST00000072475.8:c.202del	ENSMUSP00000072296.6:p.Thr68GlnfsTer30	H-2-Kb	9	15	0	TNMLWHWCL	NA	NetMHCpan	282.3	NA	NA	91	0.187	358.473	NA	NA	NA	1614.45	NA	282.3	NA	425.7062242	NA	291.2393144	M1	1	1	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.193	91	0	0	NA	7qA1	chr7-3489139-20073487	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.876644681	sgMsh2	cell line
chr7	102714398	102714398	T	A	ENSMUST00000216312.1	5	ENSMUSG00000066273	missense	K/M	5	Olfr33	ENSMUST00000216312.1:c.14A>T	ENSMUSP00000149588.1:p.Lys5Met	H-2-Db	9	5	1	MAFVNITFF	KAFVNITFF	NetMHCpan	20.3	20.5	1.01	174	0.356	27.224	31.169	1.145	17.48	20.52	20.5	20.3	43.01500721	40.79622703	41.8379118	33.92891721	M1	1.842857143	1.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.36	174	0	0	NA	7qE3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	122627780	122627780	A	G	ENSMUST00000064989.11	1	ENSMUSG00000052889	missense	N/S	663	Prkcb	ENSMUST00000064989.11:c.1988A>G	ENSMUSP00000070019.5:p.Asn663Ser	H-2-Db	9	7	5	FSFVSSEFL	FSFVNSEFL	NetMHCpan	67.3	3.9	0.058	118	0.297	229.695	12.388	0.054	6.26	102.47	3.9	67.3	21.95937625	445.2664776	18.51697329	356.9192732	M1	1.214285714	1.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.303	118	0	0	NA	7qF2	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	81101095	81101095	T	C	ENSMUST00000107348.1	1	ENSMUSG00000038763	missense	W/R	1538	Alpk3	ENSMUST00000107348.1:c.4612T>C	ENSMUSP00000102971.1:p.Trp1538Arg	H-2-Db	9	9	3	YQRTNGSFL	YQWTNGSFL	NetMHCpan	123.2	26.5	0.215	78	0.256	312.704	56.356	0.18	8.22	131.53	26.5	123.2	91.33137583	493.878363	86.21245256	572.2291797	M1	-0.471428571	-0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.26	78	0	0	NA	7qD3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	66784798	66784798	T	C	ENSMUST00000066475.10	1	ENSMUSG00000030510	missense	W/R	216	Cers3	ENSMUST00000066475.10:c.646T>C	ENSMUSP00000069238.8:p.Trp216Arg	H-2-Kb	8	8	4	SQYRYYIL	SQYWYYIL	NetMHC	4.27	6.01	1.407	286	0.213	11.074	15.356	1.387	6.01	4.27	10.4	7.4	20.3114066	14.74823333	31.82291802	20.73671696	M1	-0.514285714	-0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.216	286	3	0	0	7qC	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.98111529	sgMsh2	cell line
chr7	99667112	99667112	T	C	ENSMUST00000107088.7	1	ENSMUSG00000030737	missense	T/A	404	Slco2b1	ENSMUST00000107088.7:c.1210A>G	ENSMUSP00000102703.1:p.Thr404Ala	H-2-Kb	8	10	2	IAASFANM	ITASFANM	NetMHC	5.86	5.92	1.01	39	0.282	17.404	13.8	0.793	5.92	5.86	10.9	9	16.70090478	25.80714726	19.75786438	31.24208431	M1	0.828571429	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.282	39	0	0	NA	7qE1	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	102714398	102714398	T	A	ENSMUST00000216312.1	5	ENSMUSG00000066273	missense	K/M	5	Olfr33	ENSMUST00000216312.1:c.14A>T	ENSMUSP00000149588.1:p.Lys5Met	H-2-Kb	8	3	3	SSMAFVNI	SSKAFVNI	NetMHC	7.44	94.75	12.735	174	0.356	21.935	114.628	5.226	94.75	7.44	72.6	8	144.7904774	43.82682402	134.5054866	35.87071224	M1	1.557142857	1.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.36	174	0	0	NA	7qE3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	108066532	108066532	T	C	ENSMUST00000071658.2	NA	ENSMUSG00000063120	missense	M/V	89	Olfr480	ENSMUST00000071658.2:c.265A>G	ENSMUSP00000071583.2:p.Met89Val	H-2-Kb	8	11	1	VYLFLSHL	MYLFLSHL	NetMHCpan	13.1	28.9	2.206	221	0.249	134.327	287.934	2.144	52.58	23.33	28.9	13.1	523.2870654	245.323979	556.8522772	262.8693795	M1	1.271428571	1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.252	221	0	0	NA	7qE3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	108031681	108031681	A	G	ENSMUST00000210173.2	3	ENSMUSG00000094426	missense	Y/H	221	Olfr478	ENSMUST00000210173.2:c.661T>C	ENSMUSP00000147713.1:p.Tyr221His	H-2-Kb	8	9	3	ISHIYILI	ISYIYILI	NetMHCpan	32.1	7	0.218	340	0.303	78.835	8.59	0.109	4.24	53.98	7	32.1	10.56185011	124.3769779	10.17981768	103.6907462	M1	1.714285714	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.304	340	0	0	NA	7qE3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	102927910	102927910	T	A	ENSMUST00000215782.2	5	ENSMUSG00000073963	missense	I/N	94	Olfr572	ENSMUST00000215782.2:c.281T>A	ENSMUSP00000149174.1:p.Ile94Asn	H-2-Kb	8	6	6	FNYKFNTF	FNYKFITF	NetMHCpan	50.8	48.2	0.949	181	0.26	130.321	119.91	0.92	86.45	77.52	48.2	50.8	158.0301673	183.1217795	153.3698525	187.8192059	M1	-1.042857143	-1.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.263	181	0	0	NA	7qE3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	45712581	45712581	C	A	ENSMUST00000107737.10	1	ENSMUSG00000057342	missense	R/L	144	Sphk2	ENSMUST00000107737.10:c.431G>T	ENSMUSP00000103366.2:p.Arg144Leu	H-2-Kb	8	4	8	ITPELLPL	ITPELLPR	NetMHC	118.41	17978.08	151.829	32	0.344	152.247	10235.102	67.227	17978.08	118.41	14279.5	146.1	3537.854762	158.3944645	6190.70344	195.7672319	M1	0.571428571	0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.324	32	17	6	0.352941176	7qB3	chr7-21035564-62476997	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	127905762	127905762	T	C	ENSMUST00000071056.13	1	ENSMUSG00000030802	missense	I/T	130	Bckdk	ENSMUST00000071056.13:c.389T>C	ENSMUSP00000070345.7:p.Ile130Thr	H-2-Kb	8	10	2	YTRAFQKL	YIRAFQKL	NetMHCpan	121.7	137.9	1.133	211	0.227	139.122	142.352	1.023	95.73	131.44	137.9	121.7	146.8047136	146.8047136	188.2521739	180.6092545	M1	-0.6	-0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.241	211	195	41	0.21025641	7qF3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	75579652	75579652	A	G	ENSMUST00000166315.6	5	ENSMUSG00000066406	missense	Q/R	111	Akap13	ENSMUST00000166315.6:c.332A>G	ENSMUSP00000129784.1:p.Gln111Arg	H-2-Kb	8	11	1	RALNFTRF	QALNFTRF	NetMHC	149.55	192.39	1.286	128	0.18	333.076	657.095	1.973	192.39	149.55	461.6	230.9	852.5895396	524.4933667	909.3686959	435.2512229	M1	0.357142857	0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.188	128	24	3	0.125	7qD1	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.853933679	sgMsh2	cell line
chr7	66172255	66172255	A	G	ENSMUST00000036372.7	1	ENSMUSG00000032640	missense	H/R	746	Chsy1	ENSMUST00000036372.7:c.2237A>G	ENSMUSP00000047487.6:p.His746Arg	H-2-Kb	8	6	6	VVHIHRPV	VVHIHHPV	NetMHC	152.96	302.38	1.977	77	0.221	218.715	254.339	1.163	302.38	152.96	255.9	320.3	236.4503711	213.1768301	252.7784229	224.2538976	M1	0.057142857	0.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.232	77	77	17	0.220779221	7qC	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	105555462	105555462	AC	A	ENSMUST00000046983.9	1	ENSMUSG00000037049	FS	P/X	183	Smpd1	ENSMUST00000046983.9:c.551del	ENSMUSP00000042187.8:p.Pro184GlnfsTer72	H-2-Kb	8	47	0	VQIHFAAA	NA	SMMPMBEC	150.918	NA	NA	79	0.291	175.233	NA	NA	NA	165.65	NA	488.7	NA	184.8161845	NA	150.9176382	M1	0.857142857	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.282	79	37	1	0.027027027	7qE3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	108171874	108171874	G	A	ENSMUST00000072035.3	NA	ENSMUSG00000096068	missense	P/L	290	Olfr486	ENSMUST00000072035.3:c.869C>T	ENSMUSP00000071918.3:p.Pro290Leu	H-2-Kb	8	5	7	VIPVLNLL	VIPVLNPL	NetMHC	173.73	43.03	0.248	221	0.231	354.134	130.801	0.369	43.03	173.73	146.4	422.9	115.8083836	306.71852	145.794117	401.5503419	M1	2.142857143	2.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.235	221	0	0	NA	7qE3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	64268700	64268700	G	C	ENSMUST00000085222.11	1	ENSMUSG00000030523	missense	W/S	1480	Trpm1	ENSMUST00000085222.11:c.4439G>C	ENSMUSP00000082318.5:p.Trp1480Ser	H-2-Kb	8	11	1	SSAEYSSI	WSAEYSSI	NetMHCpan	124.4	800.3	6.433	223	0.202	215.247	757.184	3.518	1539.96	187.42	800.3	124.4	691.416915	243.0748352	714.0687051	313.1410475	M1	-0.128571429	-0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.189	223	0	0	NA	7qC	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.858475879	sgMsh2	cell line
chr7	108031681	108031681	A	G	ENSMUST00000210173.2	3	ENSMUSG00000094426	missense	Y/H	221	Olfr478	ENSMUST00000210173.2:c.661T>C	ENSMUSP00000147713.1:p.Tyr221His	H-2-Kb	8	7	5	IAISHIYI	IAISYIYI	NetMHCpan	132.8	22.8	0.172	340	0.303	294.664	57.982	0.197	28.92	212.85	22.8	132.8	99.25216755	384.3616066	87.04423244	376.4783444	M1	1.428571429	1.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.304	340	0	0	NA	7qE3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	91940074	91940074	T	A	ENSMUST00000107196.9	1	ENSMUSG00000052572	missense	I/N	227	Dlg2	ENSMUST00000107196.9:c.680T>A	ENSMUSP00000102814.2:p.Ile227Asn	H-2-Kb	8	5	7	SIYVTKNI	SIYVTKII	NetMHC	242.01	2437.57	10.072	106	0.226	286.831	2390.198	8.333	2437.57	242.01	1637.8	259.8	2481.646968	364.5356443	2342.825811	313.8629122	M1	0.542857143	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.245	106	0	0	NA	7qE1	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	105555462	105555462	AC	A	ENSMUST00000046983.9	1	ENSMUSG00000037049	FS	P/X	183	Smpd1	ENSMUST00000046983.9:c.551del	ENSMUSP00000042187.8:p.Pro184GlnfsTer72	H-2-Kb	8	38	0	STWRAQTL	NA	NetMHCpan	140.5	NA	NA	79	0.291	249.349	NA	NA	NA	259.51	NA	140.5	NA	239.1883374	NA	262.2647967	M1	-0.671428571	-0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.282	79	37	1	0.027027027	7qE3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	143781688	143781688	A	T	ENSMUST00000054048.9	1	ENSMUSG00000048965	missense	L/H	26	Mrgpre	ENSMUST00000054048.9:c.77T>A	ENSMUSP00000058000.8:p.Leu26His	H-2-Kb	8	7	5	TILSHTEL	TILSLTEL	SMM	254.531	564.599	2.218	54	0.222	270.59	569.599	2.105	574.6	263.48	405.1	277.7	564.598864	254.5305993	580.4168341	288.8949831	M1	0.557142857	0.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.241	54	1	0	0	7qF5	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	108714066	108714066	C	A	ENSMUST00000074730.3	NA	ENSMUSG00000056946	missense	L/M	238	Olfr512	ENSMUST00000074730.3:c.712C>A	ENSMUSP00000074291.4:p.Leu238Met	H-2-Kb	8	6	6	ILFTIMRM	ILFTILRM	NetMHCpan	74.1	112.6	1.52	355	0.251	290.124	605.685	2.088	729.71	264.21	112.6	74.1	758.1235717	462.1042896	481.6593553	316.0385059	M1	1.385714286	1.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.252	355	0	0	NA	7qE3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	100503182	100503182	A	G	ENSMUST00000207405.1	1	ENSMUSG00000030708	missense	M/T	309	Dnajb13	ENSMUST00000207405.1:c.926T>C	ENSMUSP00000147019.1:p.Met309Thr	H-2-Kb	8	13	2	QTLRQALL	QMLRQALL	SMM	286.906	520.883	1.816	44	0.273	461.754	706.441	1.53	350.19	416.82	892	1408.6	520.8827797	286.906244	911.4650073	506.6872779	M1	0.642857143	0.642857143	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.267	44	1	0	0	7qE2	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	108066532	108066532	T	C	ENSMUST00000071658.2	NA	ENSMUSG00000063120	missense	M/V	89	Olfr480	ENSMUST00000071658.2:c.265A>G	ENSMUSP00000071583.2:p.Met89Val	H-2-Kb	8	8	4	HTPVYLFL	HTPMYLFL	NetMHCpan	245.7	219.6	0.894	221	0.249	262.002	292.515	1.116	407.26	463.94	219.6	245.7	316.0385059	266.5262568	268.9923939	257.4779247	M1	1.571428571	1.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.252	221	0	0	NA	7qE3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	86811337	86811337	G	A	ENSMUST00000164996.1	5	ENSMUSG00000090949	missense	V/I	624	Vmn2r77	ENSMUST00000164996.1:c.1870G>A	ENSMUSP00000129540.1:p.Val624Ile	H-2-Kb	8	6	6	ETLSYILL	ETLSYVLL	SMMPMBEC	299.737	258.071	0.861	274	0.266	438.719	380.319	0.867	864.89	988.22	444.6	532.5	316.0385059	344.9371732	258.0714726	299.7367541	M1	1.871428571	1.871428571	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.276	274	0	0	NA	7qD3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	86811337	86811337	G	A	ENSMUST00000164996.1	5	ENSMUSG00000090949	missense	V/I	624	Vmn2r77	ENSMUST00000164996.1:c.1870G>A	ENSMUSP00000129540.1:p.Val624Ile	H-2-Kb	9	8	4	LSYILLTSL	LSYVLLTSL	NetMHCpan	26.5	23.3	0.879	274	0.266	55.636	50.423	0.906	24.09	28.24	23.3	26.5	76.75558746	92.92017092	84.382036	83.03286055	M1	1.871428571	1.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.276	274	0	0	NA	7qD3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	108066532	108066532	T	C	ENSMUST00000071658.2	NA	ENSMUSG00000063120	missense	M/V	89	Olfr480	ENSMUST00000071658.2:c.265A>G	ENSMUSP00000071583.2:p.Met89Val	H-2-Kb	9	10	2	PVYLFLSHL	PMYLFLSHL	SMM	27.74	12.797	0.461	221	0.249	31.825	25.891	0.814	28.38	30.85	39.4	32.8	12.79705392	27.74022632	23.40183969	47.56089297	M1	1.271428571	1.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.252	221	0	0	NA	7qE3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	99667112	99667112	T	C	ENSMUST00000107088.7	1	ENSMUSG00000030737	missense	T/A	404	Slco2b1	ENSMUST00000107088.7:c.1210A>G	ENSMUSP00000102703.1:p.Thr404Ala	H-2-Kb	9	10	2	IAASFANML	ITASFANML	NetMHC	49.5	59.95	1.211	39	0.282	106.089	142.925	1.347	59.95	49.5	72	56.9	213.850367	155.2780255	358.3026333	277.4917016	M1	1.114285714	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.282	39	0	0	NA	7qE1	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	99667112	99667112	T	C	ENSMUST00000107088.7	1	ENSMUSG00000030737	missense	T/A	404	Slco2b1	ENSMUST00000107088.7:c.1210A>G	ENSMUSP00000102703.1:p.Thr404Ala	H-2-Kb	9	9	3	SIAASFANM	SITASFANM	NetMHC	52.64	67.03	1.273	39	0.282	261.476	391.398	1.497	67.03	52.64	142.9	83.3	639.8968908	439.6529586	738.3291242	556.2243536	M1	0.828571429	1.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.282	39	0	0	NA	7qE1	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	75579652	75579652	A	G	ENSMUST00000166315.6	5	ENSMUSG00000066406	missense	Q/R	111	Akap13	ENSMUST00000166315.6:c.332A>G	ENSMUSP00000129784.1:p.Gln111Arg	H-2-Kb	9	11	1	RALNFTRFL	QALNFTRFL	NetMHC	68.36	76.32	1.116	128	0.18	486.821	341.816	0.702	76.32	68.36	192.6	126.2	491.0322312	847.4420308	748.6003055	1016.833861	M1	0.642857143	0.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.188	128	24	3	0.125	7qD1	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.853933679	sgMsh2	cell line
chr7	86230157	86230157	G	T	ENSMUST00000165771.1	5	ENSMUSG00000091239	missense	L/I	312	Vmn2r76	ENSMUST00000165771.1:c.934C>A	ENSMUSP00000127309.1:p.Leu312Ile	H-2-Kb	9	11	1	IFNSFHGTL	LFNSFHGTL	NetMHC	90.6	323.06	3.566	143	0.231	213.074	517.132	2.427	323.06	90.6	536.4	171.4	497.86317	254.7475407	565.2622723	289.2344371	M1	-0.285714286	0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.244	143	0	0	NA	7qD3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	102154007	102154007	G	T	ENSMUST00000210682.1	5	ENSMUSG00000063550	missense	P/H	662	Nup98	ENSMUST00000210682.1:c.1985C>A	ENSMUSP00000148115.1:p.Pro662His	H-2-Kb	9	4	8	VSRFYTNHI	VSRFYTNPI	NetMHCpan	89.5	68.1	0.761	187	0.235	127.078	97.48	0.767	73.59	91.56	68.1	89.5	121.3696222	162.5960534	131.9015807	176.7054726	M1	-0.842857143	-0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.246	187	205	54	0.263414634	7qE2	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	108031681	108031681	A	G	ENSMUST00000210173.2	3	ENSMUSG00000094426	missense	Y/H	221	Olfr478	ENSMUST00000210173.2:c.661T>C	ENSMUSP00000147713.1:p.Tyr221His	H-2-Kb	9	7	5	IAISHIYIL	IAISYIYIL	NetMHCpan	89.6	39.6	0.442	340	0.303	172.099	112.772	0.655	92.77	178.58	39.6	89.6	132.7730709	165.6189397	178.3405083	224.0010221	M1	1.714285714	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.304	340	0	0	NA	7qE3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	66784798	66784798	T	C	ENSMUST00000066475.10	1	ENSMUSG00000030510	missense	W/R	216	Cers3	ENSMUST00000066475.10:c.646T>C	ENSMUSP00000069238.8:p.Trp216Arg	H-2-Kb	9	8	4	SQYRYYILE	SQYWYYILE	SMM	92.493	70.325	0.76	286	0.213	160.502	195.895	1.221	314.3	217.43	396.3	364.7	70.32504197	92.49324152	77.49077422	103.5738214	M1	-0.514285714	-0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.216	286	3	0	0	7qC	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.98111529	sgMsh2	cell line
chr7	138229856	138229856	A	G	ENSMUST00000160436.1	5	ENSMUSG00000091002	missense	M/T	464	Tcerg1l	ENSMUST00000160436.1:c.1391T>C	ENSMUSP00000124476.1:p.Met464Thr	H-2-Kb	9	5	7	VTHFRDTLL	VTHFRDMLL	SMMPMBEC	144.295	160.048	1.109	69	0.188	193.254	171.84	0.889	177.68	224.66	340.6	468.5	166.0007308	161.8489924	160.0479073	144.2945739	M1	-0.214285714	-0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.211	69	0	0	NA	7qF4	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.958404288	sgMsh2	cell line
chr7	44860083	44860083	A	T	ENSMUST00000003044.13	1	ENSMUSG00000002963	missense	I/F	214	Pnkp	ENSMUST00000003044.13:c.640A>T	ENSMUSP00000003044.7:p.Ile214Phe	H-2-Kb	9	10	2	VFFTNQMGI	VIFTNQMGI	NetMHC	224.67	173.98	0.774	123	0.228	495.62	287.013	0.579	173.98	224.67	171	466.3	400.0460623	524.9404026	441.8247089	598.7561676	M1	0.157142857	0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.211	123	70	27	0.385714286	7qB3	chr7-21035564-62476997	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.958404288	sgMsh2	cell line
chr7	104159943	104159943	A	C	ENSMUST00000051137.14	1	ENSMUSG00000044265	missense	L/R	220	Olfm5	ENSMUST00000051137.14:c.659T>G	ENSMUSP00000052174.8:p.Leu220Arg	H-2-Kb	9	7	5	VSRPRVVKL	VSRPLVVKL	SMMPMBEC	208.089	557.507	2.679	99	0.152	273.38	594.873	2.176	632.24	284.66	363.6	262.1	738.0911534	297.9270937	557.5065832	208.0894201	M1	-0.328571429	0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.166	99	0	0	NA	7qE3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.754005269	sgMsh2	cell line
chr7	80759891	80759891	A	G	ENSMUST00000167377.2	1	ENSMUSG00000030536	missense	V/A	232	Iqgap1	ENSMUST00000167377.2:c.695T>C	ENSMUSP00000128278.1:p.Val232Ala	H-2-Kb	9	11	1	AAADTFTAL	VAADTFTAL	NetMHC	329.73	83.82	0.254	50	0.28	443.609	141.997	0.32	83.82	329.73	105.3	356.2	178.6940122	531.018926	254.2435828	701.8592048	M1	0.757142857	0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.295	50	347	83	0.239193084	7qD3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	55933103	55933103	G	A	ENSMUST00000119201.7	1	ENSMUSG00000030452	missense	A/V	298	Nipa2	ENSMUST00000119201.7:c.893C>T	ENSMUSP00000114020.1:p.Ala298Val	H-2-Kb	9	3	9	IVGIFLLHV	IVGIFLLHA	SMMPMBEC	293.934	1014.495	3.451	113	0.363	319.481	1799.346	5.632	2393.35	336.89	4122.3	831.1	1205.341196	302.0716724	1014.495208	293.9341186	M1	2.214285714	3.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.347	113	106	32	0.301886792	7qB5	chr7-21035564-62476997	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	108317521	108317521	T	C	ENSMUST00000214605.1	2	ENSMUSG00000094612	missense	V/A	209	Olfr491	ENSMUST00000214605.1:c.626T>C	ENSMUSP00000150694.1:p.Val209Ala	H-2-Kb	9	10	2	VATVFVISV	VVTVFVISV	NetMHC	342.27	467.62	1.366	316	0.247	395.11	553.012	1.4	467.62	342.27	735.6	356.6	487.6519891	433.6206938	618.3722614	534.872168	M1	2.628571429	3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.257	316	0	0	NA	7qE3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	64268700	64268700	G	C	ENSMUST00000085222.11	1	ENSMUSG00000030523	missense	W/S	1480	Trpm1	ENSMUST00000085222.11:c.4439G>C	ENSMUSP00000082318.5:p.Trp1480Ser	H-2-Kb	9	11	1	SSAEYSSIM	WSAEYSSIM	SMM	248.949	549.68	2.208	223	0.202	400.532	1022.328	2.552	1271.53	371.28	1544.2	441.3	549.6800816	248.9487787	773.1255038	429.783759	M1	0.257142857	0.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.189	223	0	0	NA	7qC	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.858475879	sgMsh2	cell line
chr7	81348426	81348426	T	A	ENSMUST00000178892.2	1	ENSMUSG00000025586	missense	Y/F	535	Cpeb1	ENSMUST00000178892.2:c.1604A>T	ENSMUSP00000137079.1:p.Tyr535Phe	H-2-Kb	9	7	5	VCFKFFCRS	VCFKYFCRS	SMM	96.407	118.607	1.23	52	0.327	202.811	222.153	1.095	822.05	618.66	325.7	298.9	118.6069123	96.40731774	113.5664369	106.721028	M1	0.242857143	1.957142857	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.362	52	0	0	NA	7qD3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr8	13576361	13576361	T	C	ENSMUST00000117551.3	1	ENSMUSG00000031453	missense	M/V	741	Rasa3	ENSMUST00000117551.3:c.2221A>G	ENSMUSP00000112998.2:p.Met741Val	H-2-Db	9	4	8	YSLFNLYVG	YSLFNLYMG	NetMHC	87.93	363.82	4.138	123	0.276	182.548	418.279	2.291	363.82	87.93	556	201.2	472.737441	298.2771604	313.0184957	163.896621	M1	1.342857143	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.284	123	65	16	0.246153846	8qA1.1	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr8	109551631	109551631	C	T	ENSMUST00000042601.8	1	ENSMUSG00000037993	missense	D/N	1138	Dhx38	ENSMUST00000042601.8:c.3412G>A	ENSMUSP00000047865.7:p.Asp1138Asn	H-2-Db	9	7	5	VTAVNGEWL	VTAVDGEWL	NetMHC	127.35	8821.39	69.269	74	0.149	384.136	9938.338	25.872	8821.39	127.35	6722.3	173.2	12723.89276	660.1156057	11055.28645	595.0726634	M1	0.214285714	0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.163	74	76	19	0.25	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.740378668	sgMsh2	cell line
chr8	16002576	16002576	C	T	ENSMUST00000082104.6	1	ENSMUSG00000060924	missense	G/R	2183	Csmd1	ENSMUST00000082104.6:c.6547G>A	ENSMUSP00000080751.6:p.Gly2183Arg	H-2-Db	9	11	1	RVYINFTLL	GVYINFTLL	NetMHCpan	111.3	419.4	3.768	115	0.165	142.28	350.172	2.461	535.81	250.04	419.4	111.3	280.9441543	144.417559	246.9278073	140.142545	M1	1.342857143	1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.157	115	0	0	NA	8qA1.2	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.713125466	sgMsh2	cell line
chr8	107183583	107183583	G	T	ENSMUST00000034400.4	1	ENSMUSG00000031924	missense	W/L	119	Cyb5b	ENSMUST00000034400.4:c.356G>T	ENSMUSP00000034400.3:p.Trp119Leu	H-2-Kb	8	11	1	LAYWFVPI	WAYWFVPI	NetMHCpan	8.4	25.7	3.06	169	0.231	19.025	29.057	1.527	22.97	9.16	25.7	8.4	38.25956254	33.86413603	32.41455024	28.88949831	M1	1.357142857	1.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.228	169	531	141	0.265536723	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr8	16002576	16002576	C	T	ENSMUST00000082104.6	1	ENSMUSG00000060924	missense	G/R	2183	Csmd1	ENSMUST00000082104.6:c.6547G>A	ENSMUSP00000080751.6:p.Gly2183Arg	H-2-Kb	8	11	1	RVYINFTL	GVYINFTL	NetMHCpan	56.9	280.9	4.937	115	0.165	146.006	500.389	3.427	397.19	57.73	280.9	56.9	947.8508415	251.0383085	603.5871704	234.2825811	M1	1.4	1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.157	115	0	0	NA	8qA1.2	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.713125466	sgMsh2	cell line
chr8	56110553	56110553	A	G	ENSMUST00000000275.8	1	ENSMUSG00000038257	missense	K/R	361	Glra3	ENSMUST00000000275.8:c.1082A>G	ENSMUSP00000000275.7:p.Lys361Arg	H-2-Kb	8	6	6	VSRQHREL	VSRQHKEL	SMM	69.621	143.794	2.065	186	0.215	100.959	250.036	2.477	322.76	105.37	1502.7	872.9	143.7937467	69.6209588	177.3127641	96.54727043	M1	-2.314285714	-2.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.231	186	0	0	NA	8qB2	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr8	124028933	124028933	T	C	ENSMUST00000034457.8	1	ENSMUSG00000031976	missense	Y/H	460	Urb2	ENSMUST00000034457.8:c.1378T>C	ENSMUSP00000034457.8:p.Tyr460His	H-2-Kb	8	7	5	VFQTHAKL	VFQTYAKL	SMM	70.915	18.312	0.258	191	0.277	106.19	20.473	0.193	16.15	114.49	51	301.1	18.31217795	70.91530907	22.63288934	97.89037676	M1	-0.414285714	-0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.274	191	34	7	0.205882353	8qE2	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr8	107183583	107183583	G	T	ENSMUST00000034400.4	1	ENSMUSG00000031924	missense	W/L	119	Cyb5b	ENSMUST00000034400.4:c.356G>T	ENSMUSP00000034400.3:p.Trp119Leu	H-2-Kb	8	9	3	SSLAYWFV	SSWAYWFV	SMM	53.919	40.527	0.752	169	0.231	101.717	67.113	0.66	103.35	140.25	91	131.2	40.52658414	53.91877292	43.22549746	72.2337231	M1	1.371428571	1.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.228	169	531	141	0.265536723	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	145268112	145268112	G	T	ENSMUST00000058022.5	1	ENSMUSG00000048677	missense	L/M	290	Tpcn2	ENSMUST00000058022.5:c.868C>A	ENSMUSP00000061308.4:p.Leu290Met	H-2-Kb	8	5	7	SLFLMNML	SLFLMNLL	NetMHCpan	128.3	115.8	0.903	57	0.14	184.84	213.272	1.154	203.32	181.86	115.8	128.3	225.8083514	187.8192059	223.2235446	189.1211064	M1	2.071428571	2.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.18	57	9	1	0.111111111	7qF5	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.817596075	sgMsh2	cell line
chr8	105878842	105878842	T	C	ENSMUST00000008594.8	1	ENSMUSG00000008450	missense	F/S	103	Nutf2	ENSMUST00000008594.8:c.308T>C	ENSMUSP00000008594.7:p.Phe103Ser	H-2-Kb	8	5	7	MGFHQMSL	MGFHQMFL	NetMHCpan	61.8	73.9	1.196	126	0.246	150.906	134.413	0.891	345.7	271.66	73.9	61.8	105.6185011	124.0909187	163.2074578	177.7215122	M1	0.085714286	0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.257	126	0	0	NA	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr8	106131579	106131579	G	A	ENSMUST00000115979.8	1	ENSMUSG00000084128	missense	A/V	690	Esrp2	ENSMUST00000115979.8:c.2069C>T	ENSMUSP00000111639.2:p.Ala690Val	H-2-Kb	8	4	8	VFQAYQLV	VFQAYQLA	SMM	199.407	1190.529	5.97	153	0.242	343.809	2807.87	8.167	4148.91	339.49	3941.8	805.9	1190.529058	199.4068165	1673.940435	348.1288376	M1	0.614285714	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.258	153	38	5	0.131578947	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr8	83725234	83725234	A	G	ENSMUST00000075843.12	1	ENSMUSG00000002885	missense	M/T	563	Adgre5	ENSMUST00000075843.12:c.1688T>C	ENSMUSP00000075240.6:p.Met563Thr	H-2-Kb	8	7	5	SSRTTVHL	SSRTMVHL	SMMPMBEC	310.27	134.196	0.433	113	0.257	344.132	130.589	0.379	73.79	367.09	280.6	1261.9	126.9813676	321.1737185	134.1961326	310.2701531	M1	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.263	113	84	14	0.166666667	8qC2	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr8	94870519	94870519	A	G	ENSMUST00000211939.1	2	ENSMUSG00000031783	missense	Q/R	276	Polr2c	ENSMUST00000211939.1:c.827A>G	ENSMUSP00000148830.1:p.Gln276Arg	H-2-Kb	8	8	4	LTLRSLPL	LTLQSLPL	NetMHCpan	327.6	685.7	2.093	47	0.191	335.545	550.203	1.64	950.43	499.98	685.7	327.6	394.2212222	333.2268594	414.7056956	337.8625068	M1	0.542857143	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.205	47	0	0	NA	8qC5	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.931151086	sgMsh2	cell line
chr8	16002576	16002576	C	T	ENSMUST00000082104.6	1	ENSMUSG00000060924	missense	G/R	2183	Csmd1	ENSMUST00000082104.6:c.6547G>A	ENSMUSP00000080751.6:p.Gly2183Arg	H-2-Kb	9	11	1	RVYINFTLL	GVYINFTLL	NetMHC	15.28	49.94	3.268	115	0.165	53.025	93.006	1.754	49.94	15.28	91.8	21.5	94.21281926	84.54929682	99.36878965	95.55424822	M1	1.342857143	1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.157	115	0	0	NA	8qA1.2	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.713125466	sgMsh2	cell line
chr8	106131579	106131579	G	A	ENSMUST00000115979.8	1	ENSMUSG00000084128	missense	A/V	690	Esrp2	ENSMUST00000115979.8:c.2069C>T	ENSMUSP00000111639.2:p.Ala690Val	H-2-Kb	9	3	9	SVFQAYQLV	SVFQAYQLA	NetMHC	32.56	334.71	10.28	153	0.242	107.145	553.156	5.163	334.71	32.56	514.6	66	591.7114865	148.2893631	726.524058	210.4989821	M1	0.614285714	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.258	153	38	5	0.131578947	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr8	124028933	124028933	T	C	ENSMUST00000034457.8	1	ENSMUSG00000031976	missense	Y/H	460	Urb2	ENSMUST00000034457.8:c.1378T>C	ENSMUSP00000034457.8:p.Tyr460His	H-2-Kb	9	6	6	TVFQTHAKL	TVFQTYAKL	NetMHC	42.12	10.72	0.255	191	0.277	141.749	43.932	0.31	10.72	42.12	14.2	48.4	86.71814915	303.4659719	73.66310144	235.0985768	M1	-0.414285714	0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.274	191	34	7	0.205882353	8qE2	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	145268112	145268112	G	T	ENSMUST00000058022.5	1	ENSMUSG00000048677	missense	L/M	290	Tpcn2	ENSMUST00000058022.5:c.868C>A	ENSMUSP00000061308.4:p.Leu290Met	H-2-Kb	9	3	9	IGSLFLMNM	IGSLFLMNL	NetMHCpan	41.9	22	0.525	57	0.14	295.444	211.026	0.714	24.76	68.36	22	41.9	397.2921646	522.5285205	422.9119919	573.1258538	M1	1.414285714	2.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.18	57	9	1	0.111111111	7qF5	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.817596075	sgMsh2	cell line
chr8	107183583	107183583	G	T	ENSMUST00000034400.4	1	ENSMUSG00000031924	missense	W/L	119	Cyb5b	ENSMUST00000034400.4:c.356G>T	ENSMUSP00000034400.3:p.Trp119Leu	H-2-Kb	9	11	1	LAYWFVPIV	WAYWFVPIV	NetMHCpan	69.6	270.9	3.892	169	0.231	100.952	192.291	1.905	152.89	75.98	270.9	69.6	185.4001153	125.9244318	199.1819593	141.9874632	M1	1.7	1.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.228	169	531	141	0.265536723	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr8	92981967	92981967	T	C	ENSMUST00000072939.7	1	ENSMUSG00000055368	missense	L/P	237	Slc6a2	ENSMUST00000072939.7:c.710T>C	ENSMUSP00000072709.6:p.Leu237Pro	H-2-Kb	9	4	8	IGLPQWQPL	IGLPQWQLL	NetMHC	107.75	246.14	2.284	90	0.211	298.434	455.793	1.527	246.14	107.75	325.3	175.9	586.2866429	460.3731641	586.4756699	420.9688878	M1	-0.5	-0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	90	0	0	NA	8qC5	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr8	109551631	109551631	C	T	ENSMUST00000042601.8	1	ENSMUSG00000037993	missense	D/N	1138	Dhx38	ENSMUST00000042601.8:c.3412G>A	ENSMUSP00000047865.7:p.Asp1138Asn	H-2-Kb	9	10	2	VNGEWLAEL	VDGEWLAEL	NetMHC	116.53	3630.39	31.154	74	0.149	130.917	2132.941	16.292	3630.39	116.53	5738.1	292.5	635.4918716	125.9244318	562.6651281	135.909558	M1	0.157142857	0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.163	74	76	19	0.25	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.740378668	sgMsh2	cell line
chr8	109954634	109954634	T	C	ENSMUST00000051430.6	1	ENSMUSG00000001672	missense	I/V	210	Marveld3	ENSMUST00000051430.6:c.628A>G	ENSMUSP00000052309.6:p.Ile210Val	H-2-Kb	9	11	1	VYYYQYGGA	IYYYQYGGA	NetMHC	145.17	174.71	1.203	24	0.208	185.852	259.231	1.395	174.71	145.17	594.1	549.4	260.6813732	177.0557356	257.7804634	194.6480243	M1	-0.914285714	-0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.24	24	1	0	0	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr8	105878842	105878842	T	C	ENSMUST00000008594.8	1	ENSMUSG00000008450	missense	F/S	103	Nutf2	ENSMUST00000008594.8:c.308T>C	ENSMUSP00000008594.7:p.Phe103Ser	H-2-Kb	9	4	8	IMGFHQMSL	IMGFHQMFL	SMMPMBEC	166.437	225.554	1.355	126	0.246	175.497	253.816	1.446	305.48	177.57	275.3	221.2	232.3325184	173.4243199	225.553723	166.4370463	M1	0.085714286	0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.257	126	0	0	NA	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr8	105878842	105878842	T	C	ENSMUST00000008594.8	1	ENSMUSG00000008450	missense	F/S	103	Nutf2	ENSMUST00000008594.8:c.308T>C	ENSMUSP00000008594.7:p.Phe103Ser	H-2-Kb	9	5	7	MGFHQMSLL	MGFHQMFLL	NetMHCpan	61.9	85	1.373	126	0.246	289.966	372.137	1.283	284.96	204	85	61.9	459.3143352	375.9326101	492.3228579	387.4806325	M1	0.685714286	0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.257	126	0	0	NA	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr8	56110553	56110553	A	G	ENSMUST00000000275.8	1	ENSMUSG00000038257	missense	K/R	361	Glra3	ENSMUST00000000275.8:c.1082A>G	ENSMUSP00000000275.7:p.Lys361Arg	H-2-Kb	9	6	6	VSRQHRELL	VSRQHKELL	SMM	223.414	253.577	1.135	186	0.215	294.719	447.137	1.517	629.88	360.22	1230.8	842.1	253.577082	223.4138023	264.3930288	229.2186762	M1	-1.657142857	-1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.231	186	0	0	NA	8qB2	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr8	105178615	105178615	A	T	ENSMUST00000052209.8	1	ENSMUSG00000031885	missense	N/I	63	Cbfb	ENSMUST00000052209.8:c.188A>T	ENSMUSP00000059382.2:p.Asn63Ile	H-2-Kb	9	3	9	IAFVATGTI	IAFVATGTN	NetMHCpan	147.4	7924.2	53.76	109	0.165	476.809	5159.061	10.82	13674.64	401.4	7924.2	147.4	2393.922023	552.2172896	1762.990613	624.0939895	M1	1.642857143	2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.187	109	216	49	0.226851852	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.849391478	sgMsh2	cell line
chr8	48235575	48235575	C	A	ENSMUST00000033965.13	1	ENSMUSG00000031561	missense	G/W	2326	Tenm3	ENSMUST00000033965.13:c.6976G>T	ENSMUSP00000033965.6:p.Gly2326Trp	H-2-Kb	9	9	3	SNWLMLKQI	SNGLMLKQI	NetMHCpan	347.5	6162.8	17.735	146	0.192	434.55	1833.357	4.219	2475.17	447.16	6162.8	347.5	1191.543769	463.5643185	1102.173589	421.9393213	M1	0.814285714	0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.199	146	0	0	NA	8qB1.1	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.903897883	sgMsh2	cell line
chr9	39910334	39910334	A	AT	ENSMUST00000214904.1	5	ENSMUSG00000095390	FS	Y/YX	177	Olfr229	ENSMUST00000214904.1:c.535dup	ENSMUSP00000149063.1:p.Cys179LeufsTer2	H-2-Db	9	5	9	INVINHYFL	INVINHYFC	NetMHC	93.11	9128.11	98.036	180	0.244	353.049	8486.799	24.039	9128.11	93.11	9861.4	106.9	7845.488678	683.3134984	4232.237198	599.1975101	M1	1.042857143	1.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2444	180	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr9	100855832	100855832	A	T	ENSMUST00000129269.7	1	ENSMUSG00000037286	missense	E/V	414	Stag1	ENSMUST00000129269.7:c.1241A>T	ENSMUSP00000116205.1:p.Glu414Val	H-2-Db	9	3	9	EALSNEDCV	EALSNEDCE	NetMHC	162.17	20754.53	127.98	222	0.266	364.555	11513.819	31.583	20754.53	162.17	29954.3	951.5	2273.107631	411.7370988	1269.316718	317.3730167	M1	-0.114285714	-0.114285714	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.262	222	66	9	0.136363636	9qE3.3	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr9	44402403	44402403	G	A	ENSMUST00000213388.1	1	ENSMUSG00000032114	missense	V/I	409	Slc37a4	ENSMUST00000213388.1:c.1225G>A	ENSMUSP00000150843.1:p.Val409Ile	H-2-Kb	8	9	3	STIVFFLL	STVVFFLL	NetMHC	8.18	13.88	1.697	95	0.253	17.327	30.659	1.769	13.88	8.18	28.3	16.8	34.09887101	17.85418375	33.01718172	17.93659491	M1	3.028571429	3.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.264	95	35	5	0.142857143	9qA5.2	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr9	62919463	62919463	GT	G	ENSMUST00000098651.5	1	ENSMUSG00000032405	FS	N/X	239	Pias1	ENSMUST00000098651.5:c.716del	ENSMUSP00000096248.4:p.Asn239ThrfsTer47	H-2-Kb	8	36	0	IPLLFLGL	NA	SMM	35.953	NA	NA	72	0.319	67.42	NA	NA	NA	95.87	NA	173.8	NA	35.95340277	NA	38.97086091	M1	2.285714286	2.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.303	72	96	6	0.0625	9qB	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr9	39258136	39258136	A	C	ENSMUST00000076903.2	NA	ENSMUSG00000063380	missense	C/G	182	Olfr945	ENSMUST00000076903.2:c.544T>G	ENSMUSP00000076169.2:p.Cys182Gly	H-2-Kb	8	6	6	INHYFGDI	INHYFCDI	NetMHCpan	102	90.9	0.891	233	0.489	276.289	313.213	1.134	217.41	182.12	90.9	102	466.380088	456.8146256	409.0157201	370.458872	M1	-0.657142857	-0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.488	233	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr9	38848204	38848204	C	T	ENSMUST00000217350.1	5	ENSMUSG00000062103	missense	A/V	30	Olfr924	ENSMUST00000217350.1:c.89C>T	ENSMUSP00000149849.1:p.Ala30Val	H-2-Kb	8	11	1	VIYVITVV	AIYVITVV	NetMHC	202.6	1252.59	6.183	243	0.243	217.935	913.276	4.191	1252.59	202.6	849.9	203.2	976.6523514	259.2626764	797.5170931	232.6697911	M1	2.8	2.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.248	243	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr9	44796345	44796345	T	G	ENSMUST00000002100.7	1	ENSMUSG00000002032	missense	S/R	218	Tmem25	ENSMUST00000002100.7:c.652A>C	ENSMUSP00000002100.7:p.Ser218Arg	H-2-Kb	8	7	5	VGVTRASL	VGVTSASL	NetMHC	207.42	171.74	0.828	43	0.233	266.032	208.604	0.784	171.74	207.42	290.8	258.7	204.5219854	333.2268594	212.686537	273.3631687	M1	0.485714286	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.232	43	3	2	0.666666667	9qA5.2	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr9	39018999	39018999	G	T	ENSMUST00000214410.1	5	ENSMUSG00000058820	missense	L/I	181	Olfr146	ENSMUST00000214410.1:c.541C>A	ENSMUSP00000149294.1:p.Leu181Ile	H-2-Kb	8	4	8	INHYFCDI	INHYFCDL	NetMHCpan	90.9	29.4	0.323	211	0.227	313.213	50.321	0.161	26.98	217.41	29.4	90.9	71.90183929	466.380088	71.24263926	409.0157201	M1	-0.242857143	-0.242857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.231	211	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr9	21309648	21309648	T	G	ENSMUST00000115433.10	1	ENSMUSG00000003309	missense	S/R	63	Ap1m2	ENSMUST00000115433.10:c.187A>C	ENSMUSP00000111093.3:p.Ser63Arg	H-2-Kb	8	6	6	LWIKHRNL	LWIKHSNL	NetMHC	270.13	164.42	0.609	76	0.237	412.985	338.064	0.819	164.42	270.13	406.5	836.8	349.7357273	425.3436955	326.3923717	400.6268017	M1	-1.1	-1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.257	76	0	0	NA	9qA3	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr9	88476836	88476836	A	G	ENSMUST00000173801.7	1	ENSMUSG00000032423	missense	F/L	207	Syncrip	ENSMUST00000173801.7:c.619T>C	ENSMUSP00000133649.1:p.Phe207Leu	H-2-Kb	8	5	7	LNRGYALV	LNRGYAFV	NetMHC	300.95	433.7	1.441	61	0.197	353.739	317.073	0.896	433.7	300.95	347.9	331	249.8848923	376.4783444	286.246378	409.9585987	M1	0.014285714	0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.231	61	63	10	0.158730159	9qE3.1	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr9	26975734	26975734	T	C	ENSMUST00000060513.7	1	ENSMUSG00000031969	missense	I/V	406	Acad8	ENSMUST00000060513.7:c.1216A>G	ENSMUSP00000054370.7:p.Ile406Val	H-2-Kb	8	11	4	RMLVSRNL	RMLISRNL	NetMHC	390.02	509.23	1.306	86	0.256	455.426	500.015	1.098	509.23	390.02	490.8	477.6	470.6954498	433.2514252	624.7985313	525.7024488	M1	0.7	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.266	86	23	5	0.217391304	9qA4	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr9	41969739	41969739	T	G	ENSMUST00000060989.8	1	ENSMUSG00000049313	missense	K/T	2162	Sorl1	ENSMUST00000060989.8:c.6485A>C	ENSMUSP00000058613.8:p.Lys2162Thr	H-2-Kb	9	7	5	ILYTTHRRL	ILYTKHRRL	NetMHCpan	38.5	39.5	1.026	28	0.107	207.103	89.609	0.433	28.42	39.88	39.5	38.5	191.9154771	390.9399022	139.7172407	374.3260056	M1	-1.585714286	-0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.148	28	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.672245662	sgMsh2	cell line
chr9	39078200	39078200	A	G	ENSMUST00000056499.3	NA	ENSMUSG00000048501	missense	F/L	182	Olfr938	ENSMUST00000056499.3:c.544T>C	ENSMUSP00000055053.2:p.Phe182Leu	H-2-Kb	9	3	9	INHYFCDLL	INHYFCDLF	NetMHC	40.99	129.13	3.15	168	0.22	94.887	238.502	2.514	129.13	40.99	365.4	57	223.9288243	132.7730709	253.0754397	146.3019114	M1	0.7	0.7	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.232	168	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr9	71725634	71725634	T	G	ENSMUST00000072899.8	5	ENSMUSG00000032232	missense	N/T	145	Cgnl1	ENSMUST00000072899.8:c.434A>C	ENSMUSP00000072672.2:p.Asn145Thr	H-2-Kb	9	10	2	LTFQRHPEL	LNFQRHPEL	NetMHCpan	36.8	28.1	0.764	125	0.216	90.799	70.924	0.781	73.26	81.31	28.1	36.8	84.74420308	133.0791444	68.58829388	100.2882377	M1	-1.385714286	-0.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.221	125	99	24	0.242424242	9qD	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr9	96297705	96297705	G	GA	ENSMUST00000165768.3	1	ENSMUSG00000032411	FS	E/EX	140	Tfdp2	ENSMUST00000165768.3:c.426dup	ENSMUSP00000128260.2:p.Glu143ArgfsTer47	H-2-Kb	9	20	0	PAYQFCSGM	NA	NetMHC	85.15	NA	NA	164	0.226	106.96	NA	NA	NA	85.15	NA	165.8	NA	88.53398242	NA	125.3862749	M1	0.171428571	0.171428571	FALSE	FALSE	FALSE	1	FALSE	0	Strelka2;Vardict	2	0.2256	164	81	0	0	9qE3.3	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr9	44402403	44402403	G	A	ENSMUST00000213388.1	1	ENSMUSG00000032114	missense	V/I	409	Slc37a4	ENSMUST00000213388.1:c.1225G>A	ENSMUSP00000150843.1:p.Val409Ile	H-2-Kb	9	11	1	IVFFLLRNI	VVFFLLRNI	NetMHCpan	47.8	44.7	0.935	95	0.253	187.871	134.222	0.714	72.96	87.93	44.7	47.8	195.4834522	287.8127307	217.8963724	288.5692163	M1	1.385714286	2.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.264	95	35	5	0.142857143	9qA5.2	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr9	79651469	79651469	G	T	ENSMUST00000071750.12	5	ENSMUSG00000032332	missense	L/M	1905	Col12a1	ENSMUST00000071750.12:c.5713C>A	ENSMUSP00000071662.6:p.Leu1905Met	H-2-Kb	9	3	9	TNYAILRNM	TNYAILRNL	NetMHCpan	55.6	21.4	0.385	109	0.22	224.841	146.602	0.652	47.67	126.75	21.4	55.6	245.5330734	322.9311952	265.0025177	359.1286062	M1	0.385714286	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.23	109	0	0	NA	9qE1	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr9	44402367	44402367	T	G	ENSMUST00000213388.1	1	ENSMUSG00000032114	missense	F/V	397	Slc37a4	ENSMUST00000213388.1:c.1189T>G	ENSMUSP00000150843.1:p.Phe397Val	H-2-Kb	9	3	9	KHYSWSTAV	KHYSWSTAF	NetMHC	183.42	228.38	1.245	97	0.196	270.33	246.344	0.911	228.38	183.42	190.8	188.2	264.3078123	352.4601324	454.2030017	587.8276359	M1	0.214285714	0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.189	97	21	2	0.095238095	9qA5.2	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.858475879	sgMsh2	cell line
chr9	73931296	73931296	T	C	ENSMUST00000184666.7	5	ENSMUSG00000062151	missense	S/G	758	Unc13c	ENSMUST00000184666.7:c.2272A>G	ENSMUSP00000139027.1:p.Ser758Gly	H-2-Kb	9	7	5	MMYRGQSEL	MMYRSQSEL	NetMHCpan	127.8	84.8	0.664	215	0.247	195.611	112.34	0.574	103.59	201.94	84.8	127.8	121.0904798	189.282298	177.1128208	236.7282022	M1	-1.457142857	-0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.257	215	13	1	0.076923077	9qD	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr9	39910334	39910334	A	AT	ENSMUST00000214904.1	5	ENSMUSG00000095390	FS	Y/YX	177	Olfr229	ENSMUST00000214904.1:c.535dup	ENSMUSP00000149063.1:p.Cys179LeufsTer2	H-2-Kb	9	5	9	INVINHYFL	INVINHYFC	NetMHCpan	167.6	5044.8	30.1	180	0.244	381.988	5729.26	14.999	7204.21	206.47	5044.8	167.6	6413.720055	632.5720517	3955.942769	557.5065832	M1	1.042857143	1.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2444	180	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr9	62919463	62919463	GT	G	ENSMUST00000098651.5	1	ENSMUSG00000032405	FS	N/X	239	Pias1	ENSMUST00000098651.5:c.716del	ENSMUSP00000096248.4:p.Asn239ThrfsTer47	H-2-Kb	9	35	0	QIPLLFLGL	NA	NetMHC	208.08	NA	NA	72	0.319	350.675	NA	NA	NA	208.08	NA	349.7	NA	351.6494966	NA	597.3790667	M1	2.285714286	2.385714286	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.303	72	96	6	0.0625	9qB	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr9	39258136	39258136	A	C	ENSMUST00000076903.2	NA	ENSMUSG00000063380	missense	C/G	182	Olfr945	ENSMUST00000076903.2:c.544T>G	ENSMUSP00000076169.2:p.Cys182Gly	H-2-Kb	9	5	7	VINHYFGDI	VINHYFCDI	NetMHC	248.12	402.57	1.622	233	0.489	313.678	336.411	1.072	402.57	248.12	262.7	378.9	382.9217191	379.4110717	289.9011913	248.4562923	M1	-0.657142857	0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.488	233	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr9	39258136	39258136	A	C	ENSMUST00000076903.2	NA	ENSMUSG00000063380	missense	C/G	182	Olfr945	ENSMUST00000076903.2:c.544T>G	ENSMUSP00000076169.2:p.Cys182Gly	H-2-Kb	9	6	6	INHYFGDIL	INHYFCDIL	NetMHCpan	249.4	114.5	0.459	233	0.489	350.747	161.261	0.46	107.57	280.66	114.5	249.4	208.0223508	420.8332054	225.553723	456.2995075	M1	0.385714286	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.488	233	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr9	39018999	39018999	G	T	ENSMUST00000214410.1	5	ENSMUSG00000058820	missense	L/I	181	Olfr146	ENSMUST00000214410.1:c.541C>A	ENSMUSP00000149294.1:p.Leu181Ile	H-2-Kb	9	4	8	INHYFCDII	INHYFCDLI	NetMHC	329.69	127.26	0.386	211	0.227	436.374	256.697	0.588	127.26	329.69	183.7	356.2	329.6932077	516.547186	338.259498	521.4948213	M1	0.9	0.9	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.231	211	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr9	59324811	59324811	A	G	ENSMUST00000026265.7	1	ENSMUSG00000025235	missense	V/A	362	Bbs4	ENSMUST00000026265.7:c.1085T>C	ENSMUSP00000026265.6:p.Val362Ala	H-2-Kb	9	8	4	RAYAEAVRL	RAYVEAVRL	NetMHCpan	175.4	120.3	0.686	161	0.292	497.9	316.494	0.636	232.02	361.77	120.3	175.4	400.9682638	634.0302809	528.7495369	724.853099	M1	0.328571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.287	161	11	5	0.454545455	9qB	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr9	43791318	43791318	A	G	ENSMUST00000034510.8	1	ENSMUSG00000032012	missense	M/V	121	Nectin1	ENSMUST00000034510.8:c.361A>G	ENSMUSP00000034510.7:p.Met121Val	H-2-Kb	9	11	1	VYICEFATF	MYICEFATF	SMM	270.464	693.601	2.564	72	0.292	347.49	830.945	2.391	915.58	403.74	908.1	406.8	693.6014622	270.4643321	753.7893549	291.2393144	M1	1.457142857	1.571428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.275	72	6	0	0	9qA5.1	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chrY	726493	726493	GT	G	ENSMUST00000189888.6	1	ENSMUSG00000053211	FS	N/X	424	Zfy1	ENSMUST00000189888.6:c.1271del	ENSMUSP00000140600.1:p.Asn424ThrfsTer24	H-2-Db	9	10	2	KTILNTLLI	NA	NetMHCpan	87.8	NA	NA	120	0.483	124.799	NA	NA	NA	104.53	NA	87.8	NA	150.1827319	NA	145.0674577	M1	2.314285714	2.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.483	120	0	0	NA	YqA1	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	sgMsh2	cell line
chrX	133588496	133588496	A	G	ENSMUST00000149154.7	1	ENSMUSG00000051323	missense	M/T	977	Pcdh19	ENSMUST00000149154.7:c.2930T>C	ENSMUSP00000116886.1:p.Met977Thr	H-2-Db	9	5	7	WMPRNPTPT	WMPRNPMPT	NetMHC	233.44	1377.14	5.899	34	0.471	363.988	1119.682	3.076	1377.14	233.44	3001.1	2034.1	862.223787	394.1123099	717.0839465	333.8643134	M1	-2.028571429	-1.557142857	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.467	34	0	0	NA	XqE3	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	sgMsh2	cell line
chrY	726493	726493	GT	G	ENSMUST00000189888.6	1	ENSMUSG00000053211	FS	N/X	424	Zfy1	ENSMUST00000189888.6:c.1271del	ENSMUSP00000140600.1:p.Asn424ThrfsTer24	H-2-Db	9	16	0	LLIKNITVL	NA	NetMHCpan	178.5	NA	NA	120	0.483	271.752	NA	NA	NA	234.78	NA	178.5	NA	381.6102225	NA	308.7237209	M1	1.271428571	1.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.483	120	0	0	NA	YqA1	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	sgMsh2	cell line
chr9	106155782	106155782	A	G	ENSMUST00000036382.12	1	ENSMUSG00000020258	missense	V/A	344	Glyctk	ENSMUST00000036382.12:c.1031T>C	ENSMUSP00000047761.6:p.Val344Ala	H-2-Kb	8	10	2	RAARFYGL	RVARFYGL	NetMHCpan	27.8	30.5	1.097	69	0.217	63.802	70.784	1.109	50	37.5	30.5	27.8	91.56721386	90.10315536	110.8510982	119.8781411	M1	0.571428571	0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.228	69	2	0	0	9qF1	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr9	106155782	106155782	A	G	ENSMUST00000036382.12	1	ENSMUSG00000020258	missense	V/A	344	Glyctk	ENSMUST00000036382.12:c.1031T>C	ENSMUSP00000047761.6:p.Val344Ala	H-2-Kb	8	11	1	AARFYGLL	VARFYGLL	NetMHCpan	46.2	13.4	0.29	69	0.217	94.506	24.316	0.257	14.69	61.15	13.4	46.2	33.94220093	127.8615603	42.43654321	145.4587999	M1	0.857142857	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.228	69	2	0	0	9qF1	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chrX	169182136	169182136	CG	C	ENSMUST00000066112.11	1	ENSMUSG00000031354	FS	P/X	76	Amelx	ENSMUST00000066112.11:c.227del	ENSMUSP00000065966.5:p.Pro76ArgfsTer26	H-2-Kb	8	19	0	TTFPWCQL	NA	NetMHCpan	41.3	NA	NA	12	0.417	54.783	NA	NA	NA	62.29	NA	41.3	NA	58.30959165	NA	51.25544401	M1	0.342857143	0.342857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.461	12	0	0	NA	XqF5	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	sgMsh2	cell line
chr9	110388416	110388416	A	C	ENSMUST00000040021.11	5	ENSMUSG00000036057	missense	S/A	791	Ptpn23	ENSMUST00000040021.11:c.2371T>G	ENSMUSP00000039580.7:p.Ser791Ala	H-2-Kb	8	7	5	THYLAGPL	THYLSGPL	NetMHC	72.44	85.54	1.181	60	0.167	105.953	117.376	1.108	85.54	72.44	222.3	188	110.0880046	101.5640475	124.6636964	110.3417837	M1	0.414285714	0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.172	60	145	35	0.24137931	9qF2	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.781258472	sgMsh2	cell line
chrX	57248988	57248988	A	G	ENSMUST00000033468.10	1	ENSMUSG00000031133	missense	V/A	479	Arhgef6	ENSMUST00000033468.10:c.1436T>C	ENSMUSP00000033468.4:p.Val479Ala	H-2-Kb	8	5	7	VIFMSQAV	VIFMSQVV	NetMHC	82.07	457.44	5.574	88	0.477	132.51	372.923	2.814	457.44	82.07	294	123.2	333.9950266	141.8208226	411.8508816	183.1217795	M1	1.557142857	1.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.474	88	0	0	NA	XqA6	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	sgMsh2	cell line
chrX	13665387	13665387	T	C	ENSMUST00000053659.1	1	ENSMUSG00000047678	missense	V/A	58	Gpr82	ENSMUST00000053659.1:c.173T>C	ENSMUSP00000062535.1:p.Val58Ala	H-2-Kb	8	8	4	ANLATANL	ANLVTANL	NetMHC	110.98	65.42	0.589	115	0.522	127.103	105.176	0.827	65.42	110.98	97.7	151.4	116.611129	121.5458122	112.6522836	132.6600022	M1	0.5	0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.514	115	0	0	NA	XqA1.1	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	sgMsh2	cell line
chrX	18264114	18264114	TA	T	ENSMUST00000052368.8	1	ENSMUSG00000037369	FS	K/X	1080	Kdm6a	ENSMUST00000052368.8:c.3241del	ENSMUSP00000061539.8:p.Thr1081ProfsTer23	H-2-Kb	8	25	0	KSGSYSYM	NA	NetMHC	225.45	NA	NA	94	0.426	286.8	NA	NA	NA	225.45	NA	399.4	NA	313.1410475	NA	260.4593785	M1	-0.5	-0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.421	94	29	4	0.137931034	XqA1.3	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	sgMsh2	cell line
chr9	110387491	110387491	AG	A	ENSMUST00000040021.11	5	ENSMUSG00000036057	FS	P/X	1099	Ptpn23	ENSMUST00000040021.11:c.3296del	ENSMUSP00000039580.7:p.Pro1099LeufsTer104	H-2-Kb	8	85	0	QTFCLLAL	NA	SMM	178.542	NA	NA	34	0.294	274.566	NA	NA	NA	346.11	NA	264.2	NA	178.5418375	NA	284.9311953	M1	2.542857143	2.542857143	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.309	34	31	0	0	9qF2	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chrX	112495365	112495365	A	G	ENSMUST00000113412.2	1	ENSMUSG00000025528	missense	M/V	7	2010106E10Rik	ENSMUST00000113412.2:c.19A>G	ENSMUSP00000109039.2:p.Met7Val	H-2-Kb	8	4	4	CTFVLTQM	CTFMLTQM	NetMHCpan	242.7	171.8	0.708	132	0.515	405.724	397.567	0.98	316.79	372.17	171.8	242.7	520.8827797	439.2785529	478.3436356	457.867692	M1	1.114285714	1.2	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.512	132	0	0	NA	XqE1	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	sgMsh2	cell line
chr9	108052065	108052065	A	G	ENSMUST00000162355.7	1	ENSMUSG00000041528	missense	V/A	1271	Rnf123	ENSMUST00000162355.7:c.3812T>C	ENSMUSP00000125745.1:p.Val1271Ala	H-2-Kb	8	8	4	ISAAFQPC	ISAVFQPC	SMM	176.092	168.943	0.959	169	0.237	417.672	294.935	0.706	357.2	561.35	396.1	585.7	168.9429215	176.0921516	232.6697911	273.9933359	M1	0.428571429	0.714285714	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.239	169	29	7	0.24137931	9qF1	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr9	106155782	106155782	A	G	ENSMUST00000036382.12	1	ENSMUSG00000020258	missense	V/A	344	Glyctk	ENSMUST00000036382.12:c.1031T>C	ENSMUSP00000047761.6:p.Val344Ala	H-2-Kb	9	10	2	RAARFYGLL	RVARFYGLL	NetMHC	16.87	23.3	1.381	69	0.217	71.279	81.97	1.15	23.3	16.87	21.8	17.5	140.6403699	125.0575741	181.6561058	157.1267038	M1	0.857142857	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.228	69	2	0	0	9qF1	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr9	108053855	108053855	T	A	ENSMUST00000085060.2	NA	ENSMUSG00000032593	missense	L/H	159	Amigo3	ENSMUST00000085060.2:c.476T>A	ENSMUSP00000082137.2:p.Leu159His	H-2-Kb	9	6	6	QGLRMHSHL	QGLRMLSHL	NetMHC	71.11	169.93	2.39	118	0.237	491.449	475.645	0.968	169.93	71.11	397.8	363.3	553.4902819	619.5979897	773.1255038	743.4469772	M1	-0.314285714	-0.314285714	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	118	2	0	0	9qF1	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr9	110387491	110387491	AG	A	ENSMUST00000040021.11	5	ENSMUSG00000036057	FS	P/X	1099	Ptpn23	ENSMUST00000040021.11:c.3296del	ENSMUSP00000039580.7:p.Pro1099LeufsTer104	H-2-Kb	9	13	0	LTPPWHMAL	NA	NetMHC	99	NA	NA	34	0.294	493.713	NA	NA	NA	99	NA	101.8	NA	901.7995204	NA	885.62527	M1	0.028571429	0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.309	34	31	0	0	9qF2	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chrX	86747655	86747655	G	A	ENSMUST00000113966.7	5	ENSMUSG00000052372	missense	P/S	560	Il1rapl1	ENSMUST00000113966.7:c.1678C>T	ENSMUSP00000109599.1:p.Pro560Ser	H-2-Kb	9	10	2	MSFKRIEPI	MPFKRIEPI	NetMHCpan	58.3	2180.6	37.403	77	0.571	177.366	2262.711	12.757	4631.31	173.91	2180.6	58.3	2344.822647	233.4049166	1946.480243	180.8214719	M1	-0.242857143	-0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.566	77	0	0	NA	XqC1	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	sgMsh2	cell line
chr9	123011604	123011604	A	G	ENSMUST00000040717.6	1	ENSMUSG00000036768	missense	Q/R	1221	Kif15	ENSMUST00000040717.6:c.3662A>G	ENSMUSP00000035490.5:p.Gln1221Arg	H-2-Kb	9	4	8	KNWLLQRRL	KNWLLQRQL	NetMHCpan	229.2	355.2	1.55	104	0.25	457.816	594.631	1.299	364.65	229.97	355.2	229.2	893.5317727	685.6618719	824.6126636	778.4845538	M1	-0.285714286	-0.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.228	104	39	4	0.102564103	9qF4	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chrX	57248988	57248988	A	G	ENSMUST00000033468.10	1	ENSMUSG00000031133	missense	V/A	479	Arhgef6	ENSMUST00000033468.10:c.1436T>C	ENSMUSP00000033468.4:p.Val479Ala	H-2-Kb	9	5	7	VIFMSQAVM	VIFMSQVVM	NetMHCpan	136.5	373.1	2.733	88	0.477	219.316	351.397	1.602	592.58	230.09	373.1	136.5	329.6932077	228.6177783	284.6098982	210.0148478	M1	1.185714286	1.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.474	88	0	0	NA	XqA6	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	sgMsh2	cell line
chrX	112495365	112495365	A	G	ENSMUST00000113412.2	1	ENSMUSG00000025528	missense	M/V	7	2010106E10Rik	ENSMUST00000113412.2:c.19A>G	ENSMUSP00000109039.2:p.Met7Val	H-2-Kb	9	4	4	CTFVLTQML	CTFMLTQML	NetMHC	241.56	216.09	0.895	132	0.515	329.475	322.252	0.978	216.09	241.56	230.4	307.3	414.1045477	351.6494966	513.1566957	537.3410257	M1	1.757142857	1.757142857	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.512	132	0	0	NA	XqE1	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	sgMsh2	cell line
chrX	9849913	9849913	T	C	ENSMUST00000057113.2	NA	ENSMUSG00000048994	missense	S/P	55	H2al3	ENSMUST00000057113.2:c.163T>C	ENSMUSP00000052025.1:p.Ser55Pro	H-2-Kb	9	6	6	LNYVTPSIL	LNYVTSSIL	SMM	217.325	118.334	0.545	126	0.532	286.985	138.425	0.482	151.65	320.37	125.2	253.6	118.334124	217.325156	242.8007366	383.9281887	M1	1.157142857	1.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.535	126	0	0	NA	XqA1.1	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	sgMsh2	cell line
chrX	101673545	101673545	GA	G	ENSMUST00000044475.4	1	ENSMUSG00000034160	FS	K/X	757	Ogt	ENSMUST00000044475.4:c.2271del	ENSMUSP00000045409.4:p.Lys757AsnfsTer23	H-2-Kb	9	22	0	VTQLLICPL	NA	NetMHCpan	324.4	NA	NA	67	0.597	478.008	NA	NA	NA	401.25	NA	324.4	NA	554.7662088	NA	602.9065471	M1	1.9	2.085714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.6	67	94	0	0	XqD	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	sgMsh2	cell line
chr9	110387491	110387491	AG	A	ENSMUST00000040021.11	5	ENSMUSG00000036057	FS	P/X	1099	Ptpn23	ENSMUST00000040021.11:c.3296del	ENSMUSP00000039580.7:p.Pro1099LeufsTer104	H-2-Kb	9	48	0	LVHTWCLHL	NA	NetMHCpan	290.2	NA	NA	34	0.294	427.46	NA	NA	NA	407.98	NA	290.2	NA	529.7976163	NA	446.9407979	M1	0.3	1.357142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.309	34	31	0	0	9qF2	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr1	85579187	85579187	CT	C	ENSMUST00000093508.6	1	ENSMUSG00000070034	FS	K/X	385	Sp110	ENSMUST00000093508.6:c.1154del	ENSMUSP00000091226.6:p.Lys385SerfsTer13	H-2-Db	9	11	1	SAFRMRQEI	NA	SMMPMBEC	212.114	NA	NA	75	0.28	246.936	NA	NA	NA	356.88	NA	263.4	NA	230.4729708	NA	212.1143253	M2_p20	-0.971428571	-0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.272	75	0	0	NA	1qC5	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr1	89145682	89145682	A	G	ENSMUST00000066279.10	1	ENSMUSG00000036206	missense	T/A	751	Sh3bp4	ENSMUST00000066279.10:c.2251A>G	ENSMUSP00000067581.4:p.Thr751Ala	H-2-Kb	8	10	2	LAYIYASV	LTYIYASV	NetMHC	3.78	3.82	1.011	55	0.109	11.317	7.996	0.707	3.82	3.78	5.6	6.2	11.3172263	17.48799418	10.39297781	16.43387578	M2_p20	1.271428571	1.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.135	55	0	0	NA	1qD	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.629277004	sgMsh2	cell line
chr1	127412243	127412243	G	T	ENSMUST00000038361.10	1	ENSMUSG00000036155	missense	V/L	454	Mgat5	ENSMUST00000038361.10:c.1360G>T	ENSMUSP00000038359.4:p.Val454Leu	H-2-Kb	8	4	8	QSLVYGKL	QSLVYGKV	NetMHC	15.26	75.8	4.967	121	0.223	52.362	246.565	4.709	75.8	15.26	265.7	39.6	232.6697911	65.12383991	260.4593785	71.90183929	M2_p20	0.771428571	0.771428571	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.238	121	0	0	NA	1qE3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr1	128364313	128364313	A	G	ENSMUST00000027602.14	1	ENSMUSG00000026356	missense	V/A	476	Dars	ENSMUST00000027602.14:c.1427T>C	ENSMUSP00000027602.8:p.Val476Ala	H-2-Kb	8	11	1	ATMLFLGL	VTMLFLGL	NetMHCpan	13.4	5.5	0.41	111	0.243	28.635	8.869	0.31	5.27	15.32	5.5	13.4	14.47904774	54.54312289	12.23883275	41.95077612	M2_p20	2.142857143	2.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.268	111	0	0	NA	1qE3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr1	84912361	84912361	C	A	ENSMUST00000027422.6	1	ENSMUSG00000026220	missense	A/S	408	Slc16a14	ENSMUST00000027422.6:c.1222G>T	ENSMUSP00000027422.5:p.Ala408Ser	H-2-Kb	8	6	6	LMHTYSSL	LMHTYASL	NetMHC	32.78	13.28	0.405	119	0.185	74.006	33.853	0.457	13.28	32.78	20.2	35.1	63.64144033	143.7937467	47.50507412	112.911974	M2_p20	-0.157142857	-0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.196	119	0	0	NA	1qC5	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.913616983	sgMsh2	cell line
chr1	88233353	88233353	T	G	ENSMUST00000113130.7	5	ENSMUSG00000079429	missense	L/R	231	Mroh2a	ENSMUST00000113130.7:c.692T>G	ENSMUSP00000108755.1:p.Leu231Arg	H-2-Kb	8	7	5	VQFYRRHL	VQFYLRHL	NetMHC	36.12	18.54	0.513	439	0.073	95.506	36.489	0.382	18.54	36.12	19.8	52.1	53.17897962	156.221211	53.17897962	138.9120754	M2_p20	-1.485714286	-1.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.069	439	0	0	NA	1qD	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.321630469	sgMsh2	cell line
chr1	132014588	132014588	A	G	ENSMUST00000086556.11	1	ENSMUSG00000026436	missense	Y/C	66	Elk4	ENSMUST00000086556.11:c.197A>G	ENSMUSP00000083743.5:p.Tyr66Cys	H-2-Kb	8	6	6	RALRYCYV	RALRYYYV	NetMHC	53.18	33.42	0.628	60	0.283	95.601	68.626	0.718	33.42	53.18	49.2	71.6	88.05215715	119.6024291	102.2680559	132.3548926	M2_p20	0.742857143	0.742857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.31	60	0	0	NA	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr1	58595689	58595689	A	T	ENSMUST00000027193.8	1	ENSMUSG00000026032	missense	I/F	67	Ndufb3	ENSMUST00000027193.8:c.199A>T	ENSMUSP00000027193.8:p.Ile67Phe	H-2-Kb	8	9	3	GNFTFPSV	GNITFPSV	NetMHCpan	49.1	289.6	5.898	139	0.237	107.5	583.368	5.427	915.1	105.67	289.6	49.1	648.2462304	133.5795574	518.4895408	109.3301641	M2_p20	0.457142857	0.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.245	139	0	0	NA	1qC1.3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr1	38798142	38798142	C	A	ENSMUST00000039612.4	1	ENSMUSG00000048814	missense	G/C	482	Lonrf2	ENSMUST00000039612.4:c.1444G>T	ENSMUSP00000047372.4:p.Gly482Cys	H-2-Kb	8	8	4	AILCMASL	AILGMASL	NetMHC	128.11	316.79	2.473	106	0.321	151.842	286.838	1.889	316.79	128.11	443.3	194.3	256.8857419	147.8223152	249.8848923	155.8619122	M2_p20	2.5	2.5	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.338	106	0	0	NA	1qB	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr1	88265942	88265942	C	T	ENSMUST00000054674.14	1	ENSMUSG00000044783	missense	D/N	415	Hjurp	ENSMUST00000054674.14:c.1243G>A	ENSMUSP00000054263.8:p.Asp415Asn	H-2-Kb	8	6	6	IKIKFNKL	IKIKFDKL	SMMPMBEC	139.232	273.993	1.968	560	0.048	185.503	617.502	3.329	961.01	226.88	1102.9	351.3	272.7344509	144.1252256	273.9933359	139.2323008	M2_p20	-0.585714286	-0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.053	560	0	0	NA	1qD	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.24704949	sgMsh2	cell line
chr1	78417407	78417407	G	T	ENSMUST00000036172.9	1	ENSMUSG00000032908	missense	R/M	349	Sgpp2	ENSMUST00000036172.9:c.1046G>T	ENSMUSP00000036656.8:p.Arg349Met	H-2-Kb	8	13	4	MLHMFLGL	MLHRFLGL	NetMHCpan	73.8	44.7	0.606	178	0.264	174.158	116.325	0.668	136.92	231.59	44.7	73.8	127.2740898	204.5219854	105.3755853	143.7937467	M2_p20	1.785714286	1.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.28	178	0	0	NA	1qC4	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr1	78417407	78417407	G	T	ENSMUST00000036172.9	1	ENSMUSG00000032908	missense	R/M	349	Sgpp2	ENSMUST00000036172.9:c.1046G>T	ENSMUSP00000036656.8:p.Arg349Met	H-2-Kb	8	11	6	VPMLHMFL	VPMLHRFL	SMM	147.822	181.861	1.23	178	0.264	366.042	656.102	1.792	1114.17	563.41	1125.5	556.8	181.861178	147.8223152	198.0341096	175.2830817	M2_p20	1.342857143	1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.28	178	0	0	NA	1qC4	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr1	6248458	6248458	T	G	ENSMUST00000027040.12	1	ENSMUSG00000025907	missense	D/E	700	Rb1cc1	ENSMUST00000027040.12:c.2100T>G	ENSMUSP00000027040.6:p.Asp700Glu	H-2-Kb	8	8	4	HTFEFETI	HTFDFETI	NetMHCpan	152.3	271.7	1.784	213	0.239	452.861	698.14	1.542	1496.9	688.75	271.7	152.3	775.7825382	498.5859086	620.4974485	407.1364636	M2_p20	0.242857143	0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.246	213	0	0	NA	1qA1	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr1	74622232	74622232	C	A	ENSMUST00000087183.10	5	ENSMUSG00000033276	missense	L/I	473	Stk36	ENSMUST00000087183.10:c.1417C>A	ENSMUSP00000084430.4:p.Leu473Ile	H-2-Kb	8	7	5	VSHLIPVL	VSHLLPVL	NetMHCpan	219	150	0.685	135	0.185	479.976	180.465	0.376	261.35	731.62	150	219	175.6871509	525.7024488	185.2422298	434.2501729	M2_p20	1.528571429	1.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.19	135	0	0	NA	1qC3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.885649116	sgMsh2	cell line
chr1	92480592	92480592	T	C	ENSMUST00000214928.2	3	ENSMUSG00000067064	missense	S/G	10	Olfr1416	ENSMUST00000214928.2:c.28A>G	ENSMUSP00000149576.1:p.Ser10Gly	H-2-Kb	8	8	3	KVGTFILL	KVSTFILL	SMMPMBEC	314.586	448.477	1.426	83	0.169	365.406	453.7	1.242	635.35	811.55	208.3	342	458.9231861	388.8123042	448.476819	314.5864409	M2_p20	2.571428571	2.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.18	83	0	0	NA	1qD	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.839036005	sgMsh2	cell line
chr1	19104458	19104458	C	A	ENSMUST00000037294.7	1	ENSMUSG00000042596	missense	P/H	45	Tfap2d	ENSMUST00000037294.7:c.134C>A	ENSMUSP00000037699.7:p.Pro45His	H-2-Kb	9	4	8	VAYSSSSHL	VAYSSSSPL	NetMHCpan	20.7	18.7	0.903	186	0.177	29.005	22.058	0.76	17.27	23.96	18.7	20.7	25.41616376	34.04944207	49.00608399	65.65230826	M2_p20	-0.557142857	0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.186	186	0	0	NA	1qA3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.867003872	sgMsh2	cell line
chr1	135469807	135469807	T	C	ENSMUST00000067414.12	5	ENSMUSG00000009418	missense	M/V	875	Nav1	ENSMUST00000067414.12:c.2623A>G	ENSMUSP00000067241.6:p.Met875Val	H-2-Kb	9	10	2	RVYPKLSGL	RMYPKLSGL	NetMHCpan	47.3	43.4	0.918	71	0.352	91.207	51.456	0.564	44.82	56.49	43.4	47.3	58.09115347	125.9244318	86.14895227	175.0854271	M2_p20	-0.057142857	1.59E-17	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.362	71	0	0	NA	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr1	78417181	78417181	G	T	ENSMUST00000036172.9	1	ENSMUSG00000032908	missense	D/Y	274	Sgpp2	ENSMUST00000036172.9:c.820G>T	ENSMUSP00000036656.8:p.Asp274Tyr	H-2-Kb	9	9	3	TTYMLVLGL	TTDMLVLGL	NetMHCpan	50.2	5346	106.494	246	0.256	135.817	4262.224	31.382	5024.11	61.62	5346	50.2	3500.338139	251.8314697	2577.804634	210.0148478	M2_p20	2.257142857	2.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.266	246	0	0	NA	1qC4	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr1	88233353	88233353	T	G	ENSMUST00000113130.7	5	ENSMUSG00000079429	missense	L/R	231	Mroh2a	ENSMUST00000113130.7:c.692T>G	ENSMUSP00000108755.1:p.Leu231Arg	H-2-Kb	9	6	6	TVQFYRRHL	TVQFYLRHL	NetMHC	126.67	85.86	0.678	439	0.073	471.067	257.259	0.546	85.86	126.67	51.1	243.5	428.6570788	722.9528931	435.7626466	698.6344547	M2_p20	-1.485714286	-1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.069	439	0	0	NA	1qD	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.321630469	sgMsh2	cell line
chr1	38798142	38798142	C	A	ENSMUST00000039612.4	1	ENSMUSG00000048814	missense	G/C	482	Lonrf2	ENSMUST00000039612.4:c.1444G>T	ENSMUSP00000047372.4:p.Gly482Cys	H-2-Kb	9	7	5	LAILCMASL	LAILGMASL	NetMHC	163.29	581.03	3.558	106	0.321	338.718	610.567	1.803	581.03	163.29	451.3	329.7	869.1805512	448.8590645	640.1032025	347.7362769	M2_p20	2.5	2.871428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.338	106	0	0	NA	1qB	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr1	78417407	78417407	G	T	ENSMUST00000036172.9	1	ENSMUSG00000032908	missense	R/M	349	Sgpp2	ENSMUST00000036172.9:c.1046G>T	ENSMUSP00000036656.8:p.Arg349Met	H-2-Kb	9	8	9	TTFVPMLHM	TTFVPMLHR	NetMHC	193.73	6290.5	32.47	178	0.264	297.586	5856.815	19.681	6290.5	193.73	14240.3	241.9	3972.921646	353.2726369	5423.12981	402.0221668	M2_p20	1.4	1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.28	178	0	0	NA	1qC4	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr1	128364313	128364313	A	G	ENSMUST00000027602.14	1	ENSMUSG00000026356	missense	V/A	476	Dars	ENSMUST00000027602.14:c.1427T>C	ENSMUSP00000027602.8:p.Val476Ala	H-2-Kb	9	6	6	IGLERATML	IGLERVTML	NetMHCpan	169.6	134.8	0.795	111	0.243	303	226.99	0.749	136.11	195.56	134.8	169.6	457.2039776	492.1641774	317.8703353	410.4403034	M2_p20	0.371428571	0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.268	111	0	0	NA	1qE3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr1	85579187	85579187	CT	C	ENSMUST00000093508.6	1	ENSMUSG00000070034	FS	K/X	385	Sp110	ENSMUST00000093508.6:c.1154del	ENSMUSP00000091226.6:p.Lys385SerfsTer13	H-2-Kb	9	11	1	SAFRMRQEI	NA	NetMHC	222.54	NA	NA	75	0.28	380.963	NA	NA	NA	222.54	NA	325.3	NA	436.6264089	NA	527.5334467	M2_p20	-0.971428571	-0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.272	75	0	0	NA	1qC5	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr1	134309689	134309689	GC	G	ENSMUST00000168515.7	1	ENSMUSG00000026458	FS	G/X	957	Ppfia4	ENSMUST00000168515.7:c.2871del	ENSMUSP00000128314.1:p.Leu958SerfsTer48	H-2-Kb	9	38	0	VSISRWWTV	NA	SMMPMBEC	128.603	NA	NA	46	0.196	134.754	NA	NA	NA	297.91	NA	132.7	NA	136.8075294	NA	128.6026743	M2_p20	0.128571429	0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.227	46	0	0	NA	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr1	78417407	78417407	G	T	ENSMUST00000036172.9	1	ENSMUSG00000032908	missense	R/M	349	Sgpp2	ENSMUST00000036172.9:c.1046G>T	ENSMUSP00000036656.8:p.Arg349Met	H-2-Kb	9	13	4	MLHMFLGLL	MLHRFLGLL	NetMHC	301.41	258.82	0.859	178	0.264	423.849	447.156	1.055	258.82	301.41	134.6	328.6	635.4918716	523.7330732	681.1613539	519.0987702	M2_p20	1.785714286	1.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.28	178	0	0	NA	1qC4	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr1	85642993	85642993	A	G	ENSMUST00000080204.10	1	ENSMUSG00000070031	missense	K/R	448	Sp140	ENSMUST00000080204.10:c.1343A>G	ENSMUSP00000079095.4:p.Lys448Arg	H-2-Kb	9	10	2	SRMPYYYYF	SKMPYYYYF	SMM	234.482	268.602	1.146	85	0.247	335.317	342.105	1.02	335.61	342.35	348.6	524.7	268.6024688	234.4822647	349.3413547	328.2842143	M2_p20	-0.3	-0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.266	85	0	0	NA	1qC5	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr1	134309689	134309689	GC	G	ENSMUST00000168515.7	1	ENSMUSG00000026458	FS	G/X	957	Ppfia4	ENSMUST00000168515.7:c.2871del	ENSMUSP00000128314.1:p.Leu958SerfsTer48	H-2-Kb	9	40	0	ISRWWTVSI	NA	NetMHCpan	199.5	NA	NA	46	0.196	429.782	NA	NA	NA	393.71	NA	199.5	NA	563.7804345	NA	465.8541836	M2_p20	0.128571429	0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.227	46	0	0	NA	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr1	134309689	134309689	GC	G	ENSMUST00000168515.7	1	ENSMUSG00000026458	FS	G/X	957	Ppfia4	ENSMUST00000168515.7:c.2871del	ENSMUSP00000128314.1:p.Leu958SerfsTer48	H-2-Kb	9	46	0	VSIEPVFSM	NA	NetMHCpan	356.9	NA	NA	46	0.196	472.213	NA	NA	NA	423.1	NA	356.9	NA	521.3267383	NA	682.7315929	M2_p20	1.071428571	1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.227	46	0	0	NA	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr1	85642993	85642993	A	G	ENSMUST00000080204.10	1	ENSMUSG00000070031	missense	K/R	448	Sp140	ENSMUST00000080204.10:c.1343A>G	ENSMUSP00000079095.4:p.Lys448Arg	H-2-Kb	9	4	8	SESSFFSRM	SESSFFSKM	SMM	350.841	639.897	1.824	85	0.247	480.171	992.792	2.068	1226.57	457.71	1243.7	666.4	639.8968908	350.8407252	759.0143731	502.6318444	M2_p20	0.085714286	0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.266	85	0	0	NA	1qC5	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr1	127412243	127412243	G	T	ENSMUST00000038361.10	1	ENSMUSG00000036155	missense	V/L	454	Mgat5	ENSMUST00000038361.10:c.1360G>T	ENSMUSP00000038359.4:p.Val454Leu	H-2-Kb	9	6	6	LVYGKLDSF	LVYGKVDSF	SMM	278.042	542.138	1.95	121	0.223	372.202	726.824	1.953	911.51	463.7	1434.9	1078.9	542.1381881	278.0417415	480.0096849	280.704904	M2_p20	-0.471428571	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.238	121	0	0	NA	1qE3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr1	110049021	110049021	GT	G	ENSMUST00000112701.7	5	ENSMUSG00000026312	FS	F/X	139	Cdh7	ENSMUST00000112701.7:c.417del	ENSMUSP00000108321.1:p.Phe139LeufsTer16	H-2-Kb	9	17	0	ISMTMNPNF	NA	NetMHCpan	270	NA	NA	144	0.194	430.417	NA	NA	NA	511.86	NA	270	NA	462.4981501	NA	398.3364054	M2_p20	-0.385714286	0.242857143	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;Vardict	3	0.218	144	0	0	NA	1qE2.1	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr1	165539831	165539831	A	G	ENSMUST00000027852.14	1	ENSMUSG00000026567	missense	T/A	557	Adcy10	ENSMUST00000027852.14:c.1669A>G	ENSMUSP00000027852.8:p.Thr557Ala	H-2-Db	9	4	8	SFHQNFYAI	SFHQNFYTI	SMM	105.104	62.176	0.592	169	0.296	167.108	96.911	0.58	73.99	141.21	379.5	647.3	62.17560216	105.1041828	119.8312253	193.0056399	M2_p20	-0.342857143	-0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.288	169	0	0	NA	1qH2.3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr1	189295690	189295690	C	T	ENSMUST00000193319.5	1	ENSMUSG00000037624	missense	A/T	127	Kcnk2	ENSMUST00000193319.5:c.379G>A	ENSMUSP00000141891.1:p.Ala127Thr	H-2-Db	9	6	6	VAAINTGII	VAAINAGII	NetMHC	153.37	117.64	0.767	117	0.179	312.04	293.714	0.941	117.64	153.37	245	282.4	347.2322064	341.6803474	342.4285761	356.0983817	M2_p20	1.528571429	1.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.184	117	0	0	NA	1qH6	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.85768125	sgMsh2	cell line
chr10	18696606	18696606	C	T	ENSMUST00000215836.1	1	ENSMUSG00000019852	missense	A/T	100	Arfgef3	ENSMUST00000215836.1:c.298G>A	ENSMUSP00000149210.1:p.Ala100Thr	H-2-Db	9	6	6	NQILNTVKV	NQILNAVKV	NetMHC	159.82	125.73	0.787	206	0.233	470.345	463.738	0.986	125.73	159.82	340.5	363.1	586.9755345	577.5904448	732.0993142	761.3248402	M2_p20	1.228571429	1.228571429	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.238	206	0	0	NA	10qA3	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr1	174159275	174159275	CT	C	ENSMUST00000213748.1	5	ENSMUSG00000055033	FS	P/X	167	Olfr420	ENSMUST00000213748.1:c.505del	ENSMUSP00000149052.1:p.Cys169ValfsTer29	H-2-Kb	8	8	6	STLPFVAL	STLPFCGS	NetMHC	9.98	3774.27	378.183	358	0.204	17.238	1572.342	91.216	3774.27	9.98	2500.9	15.3	350.5419514	19.17520431	643.7837347	26.40827294	M2_p20	2.014285714	2.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.212	358	0	0	NA	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.988197962	sgMsh2	cell line
chr10	50754122	50754122	G	T	ENSMUST00000035606.9	5	ENSMUSG00000038774	missense	S/I	1769	Ascc3	ENSMUST00000035606.9:c.5306G>T	ENSMUSP00000036726.8:p.Ser1769Ile	H-2-Kb	8	8	4	MNPIYYSL	MNPSYYSL	NetMHC	10.83	12.27	1.133	289	0.246	32.613	36.465	1.118	12.27	10.83	28.9	21.7	44.02911945	43.52512229	62.62388407	64.23030732	M2_p20	-0.028571429	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.249	289	0	0	NA	10qB3	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr1	174430463	174430463	GT	G	ENSMUST00000192358.2	2	ENSMUSG00000051509	FS	F/X	12	Olfr414	ENSMUST00000192358.2:c.36del	ENSMUSP00000142051.1:p.Phe12LeufsTer26	H-2-Kb	8	12	0	SWWGFLPL	NA	NetMHC	46.67	NA	NA	200	0.255	63.18	NA	NA	NA	46.67	NA	87.2	NA	68.98267002	NA	57.37728575	M2_p20	0.942857143	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.26	200	0	0	NA	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr1	152855898	152855898	T	C	ENSMUST00000043560.14	1	ENSMUSG00000042772	missense	R/G	379	Smg7	ENSMUST00000043560.14:c.1135A>G	ENSMUSP00000041241.8:p.Arg379Gly	H-2-Kb	8	5	7	VSMDWLGL	VSMDWLRL	NetMHCpan	34.7	24.7	0.712	216	0.218	70.049	45.03	0.643	38.45	50.82	24.7	34.7	69.30107956	116.611129	51.61072977	89.27708467	M2_p20	0.557142857	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.228	216	0	0	NA	1qG3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr10	40227566	40227566	T	G	ENSMUST00000183309.7	1	ENSMUSG00000038510	missense	S/R	197	Rpf2	ENSMUST00000183309.7:c.589A>C	ENSMUSP00000138581.1:p.Ser197Arg	H-2-Kb	8	7	5	VYFRRYKL	VYFRSYKL	NetMHC	57.17	143.56	2.511	162	0.179	156.487	155.477	0.994	143.56	57.17	65	69.9	167.3940435	272.7344509	189.1211064	243.0748352	M2_p20	-1.271428571	-1.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.19	162	0	0	NA	10qB1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	0.885649116	sgMsh2	cell line
chr10	41253689	41253689	A	C	ENSMUST00000043814.4	1	ENSMUSG00000038417	missense	L/V	512	Fig4	ENSMUST00000043814.4:c.1534T>G	ENSMUSP00000039598.3:p.Leu512Val	H-2-Kb	8	4	8	LAYQLYSV	LAYQLYSL	NetMHCpan	100	22.6	0.226	187	0.193	191.43	48.686	0.254	21.8	115.72	22.6	100	74.77217263	267.1406633	77.57825382	281.0217928	M2_p20	0.414285714	0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.198	187	0	0	NA	10qB1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	0.922939606	sgMsh2	cell line
chr1	174430463	174430463	GT	G	ENSMUST00000192358.2	2	ENSMUSG00000051509	FS	F/X	12	Olfr414	ENSMUST00000192358.2:c.36del	ENSMUSP00000142051.1:p.Phe12LeufsTer26	H-2-Kb	8	24	0	HSSLFSFL	NA	SMMPMBEC	172.48	NA	NA	200	0.255	197.335	NA	NA	NA	200.25	NA	238.5	NA	194.4195797	NA	172.480499	M2_p20	1.542857143	1.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.26	200	0	0	NA	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr1	151351713	151351713	T	C	ENSMUST00000023918.12	1	ENSMUSG00000023150	missense	Y/H	91	Ivns1abp	ENSMUST00000023918.12:c.271T>C	ENSMUSP00000023918.6:p.Tyr91His	H-2-Kb	8	5	7	VLLNYAHT	VLLNYAYT	SMMPMBEC	192.637	198.034	1.028	186	0.253	277.822	339.303	1.221	371.18	233.73	1146.3	1299.8	307.4255792	321.9141004	198.0341096	192.6371303	M2_p20	0.1	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.269	186	0	0	NA	1qG1	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr1	174430463	174430463	GT	G	ENSMUST00000192358.2	2	ENSMUSG00000051509	FS	F/X	12	Olfr414	ENSMUST00000192358.2:c.36del	ENSMUSP00000142051.1:p.Phe12LeufsTer26	H-2-Kb	8	26	0	SLFSFLQF	NA	NetMHCpan	52.8	NA	NA	200	0.255	235.825	NA	NA	NA	244.8	NA	52.8	NA	340.9887101	NA	226.8506354	M2_p20	1.671428571	1.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.26	200	0	0	NA	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr1	139489652	139489652	T	C	ENSMUST00000053364.11	1	ENSMUSG00000033952	missense	F/L	2796	Aspm	ENSMUST00000053364.11:c.8386T>C	ENSMUSP00000059159.8:p.Phe2796Leu	H-2-Kb	8	4	8	VIFIQRWL	VIFIQRWF	SMM	67.568	1098.348	16.255	119	0.21	141.56	1282.237	9.058	1985.41	305.53	1162.5	171.5	1098.348092	67.56783445	1401.97413	111.6194813	M2_p20	0.957142857	1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.205	119	0	0	NA	1qF	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.955568784	sgMsh2	cell line
chr10	4106413	4106413	C	T	ENSMUST00000120585.7	1	ENSMUSG00000040675	missense	H/Y	910	Mthfd1l	ENSMUST00000120585.7:c.2728C>T	ENSMUSP00000112897.1:p.His910Tyr	H-2-Kb	8	7	5	MAKTYLSL	MAKTHLSL	NetMHCpan	120.4	1166.7	9.69	90	0.267	225.556	1067.199	4.731	2990.56	345.37	1166.7	120.4	880.5215715	227.3735801	967.6983488	223.738128	M2_p20	0.385714286	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.288	90	0	0	NA	10qA1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr10	40227566	40227566	T	G	ENSMUST00000183309.7	1	ENSMUSG00000038510	missense	S/R	197	Rpf2	ENSMUST00000183309.7:c.589A>C	ENSMUSP00000138581.1:p.Ser197Arg	H-2-Kb	8	8	4	YFRRYKLL	YFRSYKLL	SMM	208.324	310.27	1.489	162	0.179	311.059	539.717	1.735	718.24	383.48	735.4	396.7	310.2701531	208.324333	361.1935614	238.6382195	M2_p20	-0.542857143	-0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.19	162	0	0	NA	10qB1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	0.885649116	sgMsh2	cell line
chr1	139490428	139490428	T	G	ENSMUST00000053364.11	1	ENSMUSG00000033952	missense	V/G	2965	Aspm	ENSMUST00000053364.11:c.8894T>G	ENSMUSP00000059159.8:p.Val2965Gly	H-2-Kb	8	7	5	VGYAGQVL	VGYAVQVL	SMM	226.851	79.203	0.349	330	0.167	240.587	93.451	0.388	69.7	407.9	107.7	238.1	79.2027024	226.8506354	115.8083836	243.0748352	M2_p20	0.6	0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.168	330	0	0	NA	1qF	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.783100271	sgMsh2	cell line
chr1	154633618	154633618	A	G	ENSMUST00000187541.6	1	ENSMUSG00000004110	missense	L/P	297	Cacna1e	ENSMUST00000187541.6:c.890T>C	ENSMUSP00000140937.1:p.Leu297Pro	H-2-Kb	8	8	4	DNIPFAVL	DNILFAVL	SMM	178.131	93.485	0.525	160	0.181	412.973	165.678	0.401	220.76	608.34	374.2	572	93.48458404	178.1312026	110.5961477	253.9451951	M2_p20	1.714285714	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.183	160	0	0	NA	1qG3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.853019939	sgMsh2	cell line
chr1	151351713	151351713	T	C	ENSMUST00000023918.12	1	ENSMUSG00000023150	missense	Y/H	91	Ivns1abp	ENSMUST00000023918.12:c.271T>C	ENSMUSP00000023918.6:p.Tyr91His	H-2-Kb	9	7	5	LNYAHTAQL	LNYAYTAQL	NetMHCpan	10.4	5.2	0.5	186	0.253	31.415	21.341	0.679	6.52	17.41	5.2	10.4	48.31811688	60.27122243	36.16179668	45.42030017	M2_p20	-0.185714286	-0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.269	186	0	0	NA	1qG1	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr10	40227566	40227566	T	G	ENSMUST00000183309.7	1	ENSMUSG00000038510	missense	S/R	197	Rpf2	ENSMUST00000183309.7:c.589A>C	ENSMUSP00000138581.1:p.Ser197Arg	H-2-Kb	9	7	5	VYFRRYKLL	VYFRSYKLL	SMM	18.035	62.103	3.443	162	0.179	20.457	61.271	2.995	60.44	22.11	37.5	28	62.10263106	18.03474475	72.98775406	18.8039895	M2_p20	-0.542857143	-0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.19	162	0	0	NA	10qB1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	0.885649116	sgMsh2	cell line
chr1	174159275	174159275	CT	C	ENSMUST00000213748.1	5	ENSMUSG00000055033	FS	P/X	167	Olfr420	ENSMUST00000213748.1:c.505del	ENSMUSP00000149052.1:p.Cys169ValfsTer29	H-2-Kb	9	8	6	STLPFVALI	STLPFCGSN	NetMHC	44.31	10298.74	232.425	358	0.204	257.552	4821.119	18.719	10298.74	44.31	6314.8	57.9	3327.438214	457.2039776	1987.238535	498.023688	M2_p20	2.757142857	2.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.212	358	0	0	NA	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.988197962	sgMsh2	cell line
chr10	26271888	26271888	T	C	ENSMUST00000060716.5	5	ENSMUSG00000051354	missense	L/P	487	Samd3	ENSMUST00000060716.5:c.1460T>C	ENSMUSP00000057805.5:p.Leu487Pro	H-2-Kb	9	6	6	QTFNFPETL	QTFNFLETL	NetMHC	70.68	27.41	0.388	116	0.241	201.184	82.234	0.409	27.41	70.68	32	90.4	132.4677013	311.967965	170.7064772	407.6148523	M2_p20	0.014285714	0.014285714	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.256	116	0	0	NA	10qA4	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr1	174159275	174159275	CT	C	ENSMUST00000213748.1	5	ENSMUSG00000055033	FS	P/X	167	Olfr420	ENSMUST00000213748.1:c.505del	ENSMUSP00000149052.1:p.Cys169ValfsTer29	H-2-Kb	9	7	7	ISTLPFVAL	ISTLPFCGS	NetMHC	78.09	5561.62	71.221	358	0.204	184.799	3286.804	17.786	5561.62	78.09	4497.5	111.9	1000.253316	257.6973782	2076.108278	291.2393144	M2_p20	2.014285714	2.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.212	358	0	0	NA	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.988197962	sgMsh2	cell line
chr1	174430463	174430463	GT	G	ENSMUST00000192358.2	2	ENSMUSG00000051509	FS	F/X	12	Olfr414	ENSMUST00000192358.2:c.36del	ENSMUSP00000142051.1:p.Phe12LeufsTer26	H-2-Kb	9	11	1	LSWWGFLPL	NA	NetMHCpan	41.6	NA	NA	200	0.255	105.058	NA	NA	NA	80.92	NA	41.6	NA	179.9326599	NA	129.1962773	M2_p20	0.942857143	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.26	200	0	0	NA	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr10	40227566	40227566	T	G	ENSMUST00000183309.7	1	ENSMUSG00000038510	missense	S/R	197	Rpf2	ENSMUST00000183309.7:c.589A>C	ENSMUSP00000138581.1:p.Ser197Arg	H-2-Kb	9	6	6	KVYFRRYKL	KVYFRSYKL	NetMHCpan	75.3	43.7	0.58	162	0.179	113.64	99.694	0.877	94.89	98.38	43.7	75.3	104.4984864	137.4390042	121.4087534	128.8991341	M2_p20	-1.271428571	-1.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.19	162	0	0	NA	10qB1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	0.885649116	sgMsh2	cell line
chr10	14131156	14131156	T	C	ENSMUST00000191138.6	1	ENSMUSG00000015501	missense	M/T	1166	Hivep2	ENSMUST00000191138.6:c.3497T>C	ENSMUSP00000140150.1:p.Met1166Thr	H-2-Kb	9	8	4	TSYTTSKHL	TSYMTSKHL	NetMHC	109.94	61.41	0.559	397	0.207	158.779	115.133	0.725	61.41	109.94	69.9	125.2	160.3651519	192.357888	216.8952295	261.3665468	M2_p20	-0.971428571	-0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.196	397	0	0	NA	10qA2	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	0.913616983	sgMsh2	cell line
chr1	174430463	174430463	GT	G	ENSMUST00000192358.2	2	ENSMUSG00000051509	FS	F/X	12	Olfr414	ENSMUST00000192358.2:c.36del	ENSMUSP00000142051.1:p.Phe12LeufsTer26	H-2-Kb	9	26	0	SLFSFLQFI	NA	NetMHCpan	69.9	NA	NA	200	0.255	259.458	NA	NA	NA	138.63	NA	69.9	NA	380.2857045	NA	519.0987702	M2_p20	1.771428571	1.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.26	200	0	0	NA	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr1	174430463	174430463	GT	G	ENSMUST00000192358.2	2	ENSMUSG00000051509	FS	F/X	12	Olfr414	ENSMUST00000192358.2:c.36del	ENSMUSP00000142051.1:p.Phe12LeufsTer26	H-2-Kb	9	25	0	SSLFSFLQF	NA	NetMHC	188.25	NA	NA	200	0.255	212.798	NA	NA	NA	188.25	NA	208.2	NA	259.483651	NA	217.3952246	M2_p20	1.671428571	1.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.26	200	0	0	NA	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr10	50754122	50754122	G	T	ENSMUST00000035606.9	5	ENSMUSG00000038774	missense	S/I	1769	Ascc3	ENSMUST00000035606.9:c.5306G>T	ENSMUSP00000036726.8:p.Ser1769Ile	H-2-Kb	9	7	5	IMNPIYYSL	IMNPSYYSL	NetMHCpan	106.8	122.5	1.147	289	0.246	213.697	155.456	0.727	120.49	198.25	122.5	106.8	188.4126249	229.1447967	231.3396105	261.9690589	M2_p20	-0.028571429	0.457142857	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.249	289	0	0	NA	10qB3	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr1	139490428	139490428	T	G	ENSMUST00000053364.11	1	ENSMUSG00000033952	missense	V/G	2965	Aspm	ENSMUST00000053364.11:c.8894T>G	ENSMUSP00000059159.8:p.Val2965Gly	H-2-Kb	9	7	5	VGYAGQVLL	VGYAVQVLL	NetMHCpan	118.8	88	0.741	330	0.167	271.495	239.376	0.882	156.46	226.58	88	118.8	343.6449768	358.1871488	322.2923521	316.4098538	M2_p20	1.2	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.168	330	0	0	NA	1qF	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.783100271	sgMsh2	cell line
chr1	173270231	173270231	A	G	ENSMUST00000213420.1	5	ENSMUSG00000049605	missense	S/G	19	Olfr418	ENSMUST00000213420.1:c.55A>G	ENSMUSP00000150427.1:p.Ser19Gly	H-2-Kb	9	4	8	FVFQGFSGF	FVFQGFSSF	NetMHCpan	196.3	191.2	0.974	266	0.068	310.099	338.26	1.091	338.26	307.51	191.2	196.3	350.8407252	312.6871254	338.259498	332.8511027	M2_p20	0.471428571	1.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2	2	0.076	266	0	0	NA	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.354259647	sgMsh2	cell line
chr10	4106413	4106413	C	T	ENSMUST00000120585.7	1	ENSMUSG00000040675	missense	H/Y	910	Mthfd1l	ENSMUST00000120585.7:c.2728C>T	ENSMUSP00000112897.1:p.His910Tyr	H-2-Kb	9	6	6	CMAKTYLSL	CMAKTHLSL	SMM	219.842	769.325	3.499	90	0.267	379.425	1154.62	3.043	1240.54	411.65	1068.7	347.2	769.3252737	219.8416627	1433.01257	449.0037829	M2_p20	0.385714286	0.585714286	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.288	90	0	0	NA	10qA1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr1	150808584	150808584	C	A	ENSMUST00000074783.11	5	ENSMUSG00000066842	missense	G/C	412	Hmcn1	ENSMUST00000074783.11:c.1234G>T	ENSMUSP00000074340.5:p.Gly412Cys	H-2-Kb	9	5	7	TGYDKDCYL	TGYDKDGYL	SMMPMBEC	281.352	241.129	0.857	104	0.202	397.422	570.225	1.435	814.53	465.91	815.3	889.7	325.9192408	328.9349344	241.1293081	281.3519957	M2_p20	-1.028571429	-1.028571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.217	104	0	0	NA	1qG1	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr10	23897365	23897365	T	C	ENSMUST00000041416.7	1	ENSMUSG00000037440	missense	Y/H	97	Vnn1	ENSMUST00000041416.7:c.289T>C	ENSMUSP00000040599.7:p.Tyr97His	H-2-Kb	9	7	5	TIYPHLEEI	TIYPYLEEI	NetMHCpan	162.8	59.8	0.367	92	0.25	280.695	187.481	0.668	155.05	490.72	59.8	162.8	228.6177783	285.1740477	219.9125427	276.216743	M2_p20	-0.685714286	-0.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.237	92	0	0	NA	10qA4	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr10	68778643	68778643	T	C	ENSMUST00000080995.7	1	ENSMUSG00000060044	missense	L/P	296	Tmem26	ENSMUST00000080995.7:c.887T>C	ENSMUSP00000079789.6:p.Leu296Pro	H-2-Db	9	5	7	FAVKNSPVM	FAVKNSLVM	NetMHC	8.71	9.25	1.062	238	0.256	25.374	27.679	1.091	9.25	8.71	9.8	10.7	46.62512402	43.51309752	45.5585612	40.04700113	M2_p20	0.071428571	0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.257	238	0	0	NA	10qB5.3	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr10	127297626	127297626	A	G	ENSMUST00000171564.7	5	ENSMUSG00000040354	missense	M/T	746	Mars	ENSMUST00000171564.7:c.2237T>C	ENSMUSP00000130666.1:p.Met746Thr	H-2-Db	9	10	2	GTAVNMAAL	GMAVNMAAL	SMMPMBEC	372.023	104.609	0.281	187	0.171	455.24	103.425	0.227	60.64	455.89	238.2	627.5	102.2398021	454.5901278	104.6092287	372.0231794	M2_p20	1.685714286	1.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.189	187	0	0	NA	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	0.880987805	sgMsh2	cell line
chr10	129856980	129856980	T	A	ENSMUST00000204622.2	5	ENSMUSG00000052818	missense	I/N	154	Olfr813	ENSMUST00000204622.2:c.461T>A	ENSMUSP00000145260.2:p.Ile154Asn	H-2-Db	9	7	5	GFLVNFPPL	GFLVIFPPL	SMM	53.042	2509.69	47.315	438	0.233	340.624	7036.526	20.658	14000.11	618.36	11000	719.4	2509.689537	53.04201329	3073.052643	62.88832099	M2_p20	1.128571429	1.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.233	438	0	0	NA	10qD3	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	sgMsh2	cell line
chr10	68778643	68778643	T	C	ENSMUST00000080995.7	1	ENSMUSG00000060044	missense	L/P	296	Tmem26	ENSMUST00000080995.7:c.887T>C	ENSMUSP00000079789.6:p.Leu296Pro	H-2-Db	11	5	7	FAVKNSPVMAL	FAVKNSLVMAL	NetMHCpan	139.4	136.7	0.981	238	0.256	479.924	423.713	0.883	274.55	315.59	136.7	139.4	572.8751711	644.2582669	2605.313561	2641.557083	M2_p20	0.828571429	0.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.257	238	0	0	NA	10qB5.3	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr10	90510766	90510766	A	T	ENSMUST00000183156.7	5	ENSMUSG00000058589	missense	N/Y	643	Anks1b	ENSMUST00000183156.7:c.1927A>T	ENSMUSP00000138539.1:p.Asn643Tyr	H-2-Kb	8	7	5	ASLAYSPL	ASLANSPL	NetMHC	3.67	417.18	113.673	153	0.144	7.854	301.425	38.376	417.18	3.67	594.1	7.3	185.6692572	8.408915726	172.0838049	8.764759423	M2_p20	0.7	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.168	153	0	0	NA	10qC2	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	0.783100271	sgMsh2	cell line
chr10	69986632	69986632	A	T	ENSMUST00000186247.6	5	ENSMUSG00000069601	missense	K/M	378	Ank3	ENSMUST00000186247.6:c.1131A>T	ENSMUSP00000139496.1:p.Lys378Met	H-2-Kb	8	6	6	SSLPFMSI	SSLPFKSI	NetMHC	13.17	89.49	6.795	193	0.166	50.034	145.835	2.915	89.49	13.17	59.5	20.5	202.1808416	79.56828547	212.1973715	102.2680559	M2_p20	1.4	1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.169	193	0	0	NA	10qB5.3	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	0.787761583	sgMsh2	cell line
chr10	129501829	129501829	T	C	ENSMUST00000218901.1	NA	ENSMUSG00000044025	missense	F/S	315	Olfr790	ENSMUST00000218901.1:c.944T>C	ENSMUSP00000151759.1:p.Phe315Ser	H-2-Kb	8	13	2	ISFSSKNL	IFFSSKNL	NetMHCpan	18.5	115.8	6.259	111	0.45	19.094	83.126	4.354	110.95	18.52	115.8	18.5	45.89231861	19.66708524	55.30189331	20.68902384	M2_p20	-0.457142857	-0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.435	111	0	0	NA	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr10	127170070	127170070	CT	C	ENSMUST00000006914.10	1	ENSMUSG00000006731	FS	F/X	302	B4galnt1	ENSMUST00000006914.10:c.907del	ENSMUSP00000006914.9:p.Tyr303ThrfsTer6	H-2-Kb	8	6	7	ASIRRFTL	ASIRRFYP	NetMHC	29	3440.11	118.624	234	0.295	210.968	4453.498	21.11	3440.11	29	1848.8	57.4	6176.465217	435.2512229	5466.885777	364.5356443	M2_p20	0.085714286	0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.31	234	0	0	NA	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr10	129626025	129626025	A	G	ENSMUST00000204979.2	2	ENSMUSG00000095002	missense	L/P	12	Olfr798	ENSMUST00000204979.2:c.35T>C	ENSMUSP00000144716.1:p.Leu12Pro	H-2-Kb	8	5	7	SVSEFIPL	SVSEFILL	NetMHC	38.39	159.69	4.16	85	0.247	72.402	215.586	2.978	159.69	38.39	96.3	42.3	271.4813499	102.5038081	318.9627742	115.8083836	M2_p20	1.342857143	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.273	85	0	0	NA	10qD3	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	sgMsh2	cell line
chr10	129768203	129768203	CT	C	ENSMUST00000203236.2	2	ENSMUSG00000049894	FS	F/X	236	Olfr808	ENSMUST00000203236.2:c.709del	ENSMUSP00000145315.1:p.Ser237ProfsTer7	H-2-Kb	8	9	4	KAFPLVPL	NA	NetMHCpan	64.6	NA	NA	160	0.344	93.483	NA	NA	NA	81.59	NA	64.6	NA	105.3755853	NA	121.2662646	M2_p20	1.885714286	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.332	160	0	0	NA	10qD3	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	sgMsh2	cell line
chr10	129261443	129261443	A	T	ENSMUST00000213512.1	5	ENSMUSG00000095483	missense	I/F	161	Olfr776	ENSMUST00000213512.1:c.481A>T	ENSMUSP00000150656.1:p.Ile161Phe	H-2-Kb	8	7	5	LIMLFLKL	LIMLILKL	NetMHCpan	52.8	1134.2	21.481	547	0.137	83.193	2780.152	33.418	3462.62	82.49	1134.2	52.8	3924.099402	124.3769779	2097.683683	83.89575756	M2_p20	2.385714286	2.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.158	547	0	0	NA	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	0.73648716	sgMsh2	cell line
chr10	127297626	127297626	A	G	ENSMUST00000171564.7	5	ENSMUSG00000040354	missense	M/T	746	Mars	ENSMUST00000171564.7:c.2237T>C	ENSMUSP00000130666.1:p.Met746Thr	H-2-Kb	8	11	1	TAVNMAAL	MAVNMAAL	NetMHC	147.37	102.1	0.693	187	0.171	227.636	170.893	0.751	102.1	147.37	283.5	401	162.832091	227.8977303	178.9534189	227.3735801	M2_p20	1.685714286	1.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.189	187	0	0	NA	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	0.880987805	sgMsh2	cell line
chr10	129856980	129856980	T	A	ENSMUST00000204622.2	5	ENSMUSG00000052818	missense	I/N	154	Olfr813	ENSMUST00000204622.2:c.461T>A	ENSMUSP00000145260.2:p.Ile154Asn	H-2-Kb	8	8	4	FLVNFPPL	FLVIFPPL	SMMPMBEC	145.124	134.816	0.929	438	0.233	153.035	161.385	1.055	239.31	151.27	172.2	154.8	150.5705372	157.3040847	134.8155538	145.1242539	M2_p20	1.128571429	1.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.233	438	0	0	NA	10qD3	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	sgMsh2	cell line
chr10	105829867	105829867	T	C	ENSMUST00000046638.9	1	ENSMUSG00000036009	missense	D/G	166	Mettl25	ENSMUST00000046638.9:c.497A>G	ENSMUSP00000038665.9:p.Asp166Gly	H-2-Kb	8	8	4	SIAGYCGL	SIADYCGL	SMM	158.03	124.377	0.787	431	0.265	194.024	156.532	0.807	113.81	165.85	225.4	278.7	124.3769779	158.0301673	188.68614	222.1979255	M2_p20	1.5	1.5	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.263	431	0	0	NA	10qD1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr10	75832028	75832028	C	T	ENSMUST00000220440.1	5	ENSMUSG00000033318	missense	E/K	198	Gstt2	ENSMUST00000220440.1:c.592G>A	ENSMUSP00000151239.1:p.Glu198Lys	H-2-Kb	8	11	1	KAFLGAEL	EAFLGAEL	NetMHCpan	156.5	1877.5	11.997	63	0.238	228.618	1833.517	8.02	3425.43	208.5	1877.5	156.5	1789.534189	318.9627742	1139.567356	248.7367755	M2_p20	1.442857143	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	63	0	0	NA	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr10	80721625	80721625	G	A	ENSMUST00000020420.8	1	ENSMUSG00000020198	missense	S/F	291	Ap3d1	ENSMUST00000020420.8:c.872C>T	ENSMUSP00000020420.7:p.Ser291Phe	H-2-Kb	8	7	5	LISLFSGM	LISLSSGM	NetMHC	261.61	10172.38	38.884	119	0.21	433.854	11377.05	26.223	10172.38	261.61	7940.4	276.5	12581.71954	661.8201718	12815.63117	591.2075887	M2_p20	1.571428571	1.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	119	0	0	NA	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	0.932262228	sgMsh2	cell line
chr10	129856980	129856980	T	A	ENSMUST00000204622.2	5	ENSMUSG00000052818	missense	I/N	154	Olfr813	ENSMUST00000204622.2:c.461T>A	ENSMUSP00000145260.2:p.Ile154Asn	H-2-Kb	8	10	2	VNFPPLAM	VIFPPLAM	NetMHCpan	143	167	1.168	438	0.233	312.226	317.317	1.016	326.5	281.1	167	143	308.1342684	343.3523309	504.3592613	603.5871704	M2_p20	0.514285714	0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.233	438	0	0	NA	10qD3	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	sgMsh2	cell line
chr10	80804794	80804794	TC	T	ENSMUST00000148665.7	1	ENSMUSG00000020211	FS	P/X	480	Sf3a2	ENSMUST00000148665.7:c.1442del	ENSMUSP00000117160.1:p.Pro481LeufsTer?	H-2-Kb	8	37	0	KVFYLSCL	NA	NetMHCpan	72	NA	NA	24	0.25	280.051	NA	NA	NA	302.03	NA	72	NA	302.5101842	NA	258.0714726	M2_p20	2.142857143	2.142857143	FALSE	FALSE	FALSE	1	FALSE	0	Strelka2;Vardict	2	0.25	24	0	0	NA	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr10	81509375	81509375	A	G	ENSMUST00000043709.7	1	ENSMUSG00000034792	missense	W/R	219	Gna15	ENSMUST00000043709.7:c.655T>C	ENSMUSP00000049175.7:p.Trp219Arg	H-2-Kb	8	11	1	RIHCFENV	WIHCFENV	SMM	346.529	467.455	1.349	174	0.247	369.99	655.698	1.772	843.94	365.18	1509.8	374.8	467.4552051	346.5293309	451.5855118	392.4099402	M2_p20	0.542857143	0.542857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.261	174	0	0	NA	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr10	64088473	64088473	T	C	ENSMUST00000105439.1	1	ENSMUSG00000042846	missense	N/S	305	Lrrtm3	ENSMUST00000105439.1:c.914A>G	ENSMUSP00000101079.1:p.Asn305Ser	H-2-Kb	8	8	4	ISLSDISL	ISLNDISL	SMMPMBEC	200.789	221.687	1.104	191	0.23	390.398	390.71	1.001	552.47	559.11	1447.6	1163.3	228.9496585	221.6868845	221.6868845	200.7890385	M2_p20	0.885714286	0.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.219	191	0	0	NA	10qB4	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr10	130472110	130472110	CA	C	ENSMUST00000164227.3	5	ENSMUSG00000091511	FS	L/X	753	Vmn2r87	ENSMUST00000164227.3:c.2258del	ENSMUSP00000129215.2:p.Leu753TrpfsTer25	H-2-Kb	8	15	0	ASLWLSWL	NA	SMM	312.421	NA	NA	378	0.259	407.641	NA	NA	NA	717.62	NA	457.4	NA	312.4208431	NA	357.8821189	M2_p20	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.258	378	0	0	NA	10qD3	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	sgMsh2	cell line
chr10	130472110	130472110	CA	C	ENSMUST00000164227.3	5	ENSMUSG00000091511	FS	L/X	753	Vmn2r87	ENSMUST00000164227.3:c.2258del	ENSMUSP00000129215.2:p.Leu753TrpfsTer25	H-2-Kb	8	19	0	LSWLGTFL	NA	SMMPMBEC	307.426	NA	NA	378	0.259	420.694	NA	NA	NA	1101.66	NA	318.1	NA	523.2870654	NA	307.4255792	M2_p20	1.085714286	1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.258	378	0	0	NA	10qD3	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	sgMsh2	cell line
chr10	129626025	129626025	A	G	ENSMUST00000204979.2	2	ENSMUSG00000095002	missense	L/P	12	Olfr798	ENSMUST00000204979.2:c.35T>C	ENSMUSP00000144716.1:p.Leu12Pro	H-2-Kb	9	4	8	TSVSEFIPL	TSVSEFILL	NetMHC	66.41	157	2.364	85	0.247	133.399	221.183	1.658	157	66.41	211.1	85.2	231.2650474	181.5975563	301.4740949	216.3963843	M2_p20	1.342857143	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.273	85	0	0	NA	10qD3	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	sgMsh2	cell line
chr10	69986632	69986632	A	T	ENSMUST00000186247.6	5	ENSMUSG00000069601	missense	K/M	378	Ank3	ENSMUST00000186247.6:c.1131A>T	ENSMUSP00000139496.1:p.Lys378Met	H-2-Kb	9	6	6	SSLPFMSII	SSLPFKSII	NetMHCpan	57.5	204	3.548	193	0.166	192.073	327.465	1.705	177.57	75.75	204	57.5	450.9309038	308.3968972	604.2963902	365.8053055	M2_p20	2.157142857	2.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.169	193	0	0	NA	10qB5.3	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	0.787761583	sgMsh2	cell line
chr10	130112718	130112718	G	A	ENSMUST00000213145.1	5	ENSMUSG00000096747	missense	P/L	24	Olfr823	ENSMUST00000213145.1:c.71C>T	ENSMUSP00000150794.1:p.Pro24Leu	H-2-Kb	9	3	9	ILLGFWTSL	ILLGFWTSP	NetMHCpan	48.5	7887	162.619	188	0.202	135.426	4554.258	33.629	7834.28	97.77	7887	48.5	1007.186741	218.3282833	1274.236379	173.0812408	M2_p20	1.085714286	1.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.188	188	0	0	NA	10qD3	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	sgMsh2	cell line
chr10	80721625	80721625	G	A	ENSMUST00000020420.8	1	ENSMUSG00000020198	missense	S/F	291	Ap3d1	ENSMUST00000020420.8:c.872C>T	ENSMUSP00000020420.7:p.Ser291Phe	H-2-Kb	9	6	6	VLISLFSGM	VLISLSSGM	NetMHCpan	53.3	550.7	10.332	119	0.21	167.709	716.736	4.274	769.56	102.55	550.7	53.3	663.9112074	232.8681001	1067.21028	301.4740949	M2_p20	1.571428571	2.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	119	0	0	NA	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	0.932262228	sgMsh2	cell line
chr10	85629240	85629240	C	T	ENSMUST00000105307.7	1	ENSMUSG00000020042	missense	S/F	648	Btbd11	ENSMUST00000105307.7:c.1943C>T	ENSMUSP00000100944.1:p.Ser648Phe	H-2-Kb	9	4	8	STPHKYPFV	STPHKYPSV	NetMHC	178.72	171.57	0.96	292	0.205	437.835	307.672	0.703	171.57	178.72	282.6	429.9	332.7438214	445.7691405	346.1385739	469.0833305	M2_p20	-0.657142857	-0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.205	292	0	0	NA	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	0.955568784	sgMsh2	cell line
chr10	127297626	127297626	A	G	ENSMUST00000171564.7	5	ENSMUSG00000040354	missense	M/T	746	Mars	ENSMUST00000171564.7:c.2237T>C	ENSMUSP00000130666.1:p.Met746Thr	H-2-Kb	9	11	1	TAVNMAALL	MAVNMAALL	NetMHC	198.23	177.34	0.895	187	0.171	499.024	425.808	0.853	177.34	198.23	303.2	458.4	548.4158525	539.6472894	650.5040428	551.1248581	M2_p20	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.189	187	0	0	NA	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	0.880987805	sgMsh2	cell line
chr10	80804794	80804794	TC	T	ENSMUST00000148665.7	1	ENSMUSG00000020211	FS	P/X	480	Sf3a2	ENSMUST00000148665.7:c.1442del	ENSMUSP00000117160.1:p.Pro481LeufsTer?	H-2-Kb	9	33	0	ASPWKVFYL	NA	NetMHCpan	176.6	NA	NA	24	0.25	417.566	NA	NA	NA	219.8	NA	176.6	NA	615.3327071	NA	634.234701	M2_p20	0.442857143	0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.25	24	0	0	NA	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr10	105829867	105829867	T	C	ENSMUST00000046638.9	1	ENSMUSG00000036009	missense	D/G	166	Mettl25	ENSMUST00000046638.9:c.497A>G	ENSMUSP00000038665.9:p.Asp166Gly	H-2-Kb	9	7	5	CSIAGYCGL	CSIADYCGL	NetMHCpan	192.9	505.7	2.622	431	0.265	330.741	580.265	1.754	610.85	223.85	505.7	192.9	549.6800816	437.6329367	650.5040428	548.5926694	M2_p20	1.5	1.5	TRUE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.263	431	0	0	NA	10qD1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr11	6415926	6415926	G	A	ENSMUST00000132846.1	1	ENSMUSG00000071866	missense	V/M	6	Ppia	ENSMUST00000132846.1:c.16G>A	ENSMUSP00000117987.1:p.Val6Met	H-2-Kb	9	2	5	VNPTMFFDI	VNPTVFFDI	NetMHCpan	217.2	457.5	2.106	121	0.264	337.958	1022.648	3.026	973.16	292.87	457.5	217.2	1276.762152	394.5572246	1072.136299	383.0451784	M2_p20	0.885714286	0.885714286	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.25	121	0	0	NA	11qA1	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr10	130472110	130472110	CA	C	ENSMUST00000164227.3	5	ENSMUSG00000091511	FS	L/X	753	Vmn2r87	ENSMUST00000164227.3:c.2258del	ENSMUSP00000129215.2:p.Leu753TrpfsTer25	H-2-Kb	9	9	3	GSWLWGASL	NA	NetMHCpan	270.2	NA	NA	378	0.259	374.862	NA	NA	NA	300.72	NA	270.2	NA	563.7804345	NA	449.0037829	M2_p20	0.914285714	0.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.258	378	0	0	NA	10qD3	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	sgMsh2	cell line
chr10	129261443	129261443	A	T	ENSMUST00000213512.1	5	ENSMUSG00000095483	missense	I/F	161	Olfr776	ENSMUST00000213512.1:c.481A>T	ENSMUSP00000150656.1:p.Ile161Phe	H-2-Kb	9	3	9	SIFPLIMLF	SIFPLIMLI	NetMHCpan	246.8	235.6	0.955	547	0.137	347.872	463.55	1.333	362.02	311.94	235.6	246.8	565.0800826	383.8044448	687.4640623	514.3396441	M2_p20	2.571428571	2.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.158	547	0	0	NA	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	0.73648716	sgMsh2	cell line
chr10	103173380	103173380	T	C	ENSMUST00000166240.7	5	ENSMUSG00000019892	missense	T/A	1081	Lrriq1	ENSMUST00000166240.7:c.3241A>G	ENSMUSP00000131419.1:p.Thr1081Ala	H-2-Kb	9	7	5	SILKALPAL	SILKTLPAL	NetMHCpan	362.2	417.3	1.152	126	0.254	466.509	445.286	0.955	273.85	365.33	417.3	362.2	473.271116	567.6883738	716.5557742	802.1396792	M2_p20	1.357142857	1.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.247	126	0	0	NA	10qD1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr10	129856980	129856980	T	A	ENSMUST00000204622.2	5	ENSMUSG00000052818	missense	I/N	154	Olfr813	ENSMUST00000204622.2:c.461T>A	ENSMUSP00000145260.2:p.Ile154Asn	H-2-Kb	9	7	5	GFLVNFPPL	GFLVIFPPL	SMM	339.711	479.855	1.413	438	0.233	407.546	743.158	1.823	1350.12	409.35	941.5	854.3	479.854973	339.7113053	544.816184	405.7420321	M2_p20	1.128571429	1.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.233	438	0	0	NA	10qD3	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	sgMsh2	cell line
chr10	130472110	130472110	CA	C	ENSMUST00000164227.3	5	ENSMUSG00000091511	FS	L/X	753	Vmn2r87	ENSMUST00000164227.3:c.2258del	ENSMUSP00000129215.2:p.Leu753TrpfsTer25	H-2-Kb	9	17	0	LWLSWLGTF	NA	SMM	245.533	NA	NA	378	0.259	456.634	NA	NA	NA	499.03	NA	2307.2	NA	245.5330734	NA	414.2380608	M2_p20	1.085714286	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.258	378	0	0	NA	10qD3	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	sgMsh2	cell line
chr11	36008549	36008549	T	C	ENSMUST00000102801.7	5	ENSMUSG00000049336	missense	Y/C	2594	Tenm2	ENSMUST00000102801.7:c.7781A>G	ENSMUSP00000099865.1:p.Tyr2594Cys	H-2-Db	9	5	7	SVLNNACYL	SVLNNAYYL	NetMHCpan	29.4	22.1	0.752	222	0.167	58.079	41.36	0.712	16.41	35.69	22.1	29.4	60.62056782	80.46740575	79.53714539	98.30373071	M2_p20	0.514285714	0.642857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.187	222	0	0	NA	11qA4	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	0.871665183	sgMsh2	cell line
chr11	43556667	43556667	G	T	ENSMUST00000050574.6	1	ENSMUSG00000044707	missense	R/L	59	Ccnjl	ENSMUST00000050574.6:c.176G>T	ENSMUSP00000058111.6:p.Arg59Leu	H-2-Db	9	9	3	SALHLAIYL	SARHLAIYL	NetMHC	172.76	6022.1	34.858	77	0.26	214.407	4374.189	20.401	6022.1	172.76	8244.8	501.5	2082.667788	190.8182902	2726.277127	237.9961875	M2_p20	1.885714286	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.26	77	0	0	NA	11qB1.1	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr11	58757857	58757857	G	A	ENSMUST00000215071.1	5	ENSMUSG00000107677	missense	S/N	64	Olfr316	ENSMUST00000215071.1:c.191G>A	ENSMUSP00000151136.1:p.Ser64Asn	H-2-Db	9	7	5	YFLLNQLSI	YFLLSQLSI	SMM	53.164	1078.003	20.277	626	0.112	141.124	3409.713	24.161	8143.16	200.67	5247	352.8	1078.003076	53.16428776	1572.425217	81.57742638	M2_p20	1.157142857	1.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.104	626	0	0	NA	11qB1.3	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	0.484776359	sgMsh2	cell line
chr11	51007844	51007844	C	A	ENSMUST00000213415.1	5	ENSMUSG00000060918	missense	L/M	291	Olfr51	ENSMUST00000213415.1:c.871C>A	ENSMUSP00000151005.1:p.Leu291Met	H-2-Db	9	9	3	YSMRNRDIK	YSLRNRDIK	SMM	203.526	184.34	0.906	205	0.215	430.983	440.773	1.023	683.59	644.91	3687.6	2110.9	184.3401769	203.5260481	197.9566064	217.0551027	M2_p20	-1.928571429	-1.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.224	205	0	0	NA	11qB1.3	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr11	84877678	84877678	A	G	ENSMUST00000067058.2	1	ENSMUSG00000045140	missense	L/P	275	Pigw	ENSMUST00000067058.2:c.824T>C	ENSMUSP00000064547.2:p.Leu275Pro	H-2-Kb	8	9	3	LAPDYTPL	LALDYTPL	NetMHC	31.59	16.62	0.526	219	0.091	114.53	46.247	0.404	16.62	31.59	25.7	65.1	69.94231455	163.9607892	66.79439184	171.6880231	M2_p20	-0.442857143	-0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.098	219	0	0	NA	11qC	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	0.456808492	sgMsh2	cell line
chr11	66094123	66094123	T	C	ENSMUST00000080665.9	5	ENSMUSG00000056752	missense	R/G	1207	Dnah9	ENSMUST00000080665.9:c.3619A>G	ENSMUSP00000079494.3:p.Arg1207Gly	H-2-Kb	8	10	2	VGQQVAPL	VRQQVAPL	SMM	66.182	315.312	4.764	142	0.19	74.627	1070.287	14.342	1743.62	66.89	2996.9	350.4	315.3116375	66.18201718	396.9538331	82.36448742	M2_p20	0.114285714	0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.204	142	0	0	NA	11qB3	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	0.950907472	sgMsh2	cell line
chr11	34688463	34688463	A	T	ENSMUST00000093193.11	1	ENSMUSG00000020143	missense	L/M	708	Dock2	ENSMUST00000093193.11:c.2122T>A	ENSMUSP00000090884.5:p.Leu708Met	H-2-Kb	8	9	3	ATMAYKKL	ATLAYKKL	NetMHCpan	62.7	80.7	1.287	336	0.208	117.441	94.582	0.805	84.03	96.29	80.7	62.7	118.7790917	204.0515979	105.1332282	138.5925865	M2_p20	-0.328571429	-0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.212	336	0	0	NA	11qA4	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	0.988197962	sgMsh2	cell line
chr11	58757857	58757857	G	A	ENSMUST00000215071.1	5	ENSMUSG00000107677	missense	S/N	64	Olfr316	ENSMUST00000215071.1:c.191G>A	ENSMUSP00000151136.1:p.Ser64Asn	H-2-Kb	8	6	6	MYFLLNQL	MYFLLSQL	NetMHCpan	183.7	77.4	0.421	626	0.112	238.921	133.441	0.559	129.56	253.53	77.4	183.7	148.8469706	240.8463117	137.3219621	236.9954455	M2_p20	0.842857143	0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.104	626	0	0	NA	11qB1.3	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	0.484776359	sgMsh2	cell line
chr11	72058021	72058021	G	A	ENSMUST00000075258.12	1	ENSMUSG00000040543	missense	R/W	769	Pitpnm3	ENSMUST00000075258.12:c.2305C>T	ENSMUSP00000074737.6:p.Arg769Trp	H-2-Kb	8	9	3	VVWHWQDL	VVRHWQDL	NetMHCpan	164	1200.7	7.321	157	0.268	222.002	907.754	4.089	1202.31	270.69	1200.7	164	614.8086937	260.4593785	592.570463	183.5439188	M2_p20	-0.571428571	-0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.279	157	0	0	NA	11qB4	chr11-69590981-82929860	4	3	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr11	57528173	57528173	A	T	ENSMUST00000020830.13	1	ENSMUSG00000020522	missense	D/V	53	Mfap3	ENSMUST00000020830.13:c.158A>T	ENSMUSP00000020830.7:p.Asp53Val	H-2-Kb	8	4	8	SAGSYSGV	SAGSYSGD	NetMHC	397.02	22519.42	56.721	123	0.146	446.118	12796.838	28.685	22519.42	397.02	29869.5	1113.8	3074.255792	459.9811133	2458.895091	432.2549746	M2_p20	0.328571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.158	123	0	0	NA	11qB1.3	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	0.73648716	sgMsh2	cell line
chr11	69881687	69881687	G	T	ENSMUST00000001631.6	1	ENSMUSG00000001588	missense	L/I	721	Acap1	ENSMUST00000001631.6:c.2161C>A	ENSMUSP00000001631.6:p.Leu721Ile	H-2-Kb	8	5	7	IFRDFSIM	IFRDFSLM	SMM	352.16	162.832	0.462	102	0.186	476.2	176.466	0.371	142.5	510.6	190.1	441.8	162.832091	352.1599796	219.1492557	544.1767718	M2_p20	0.457142857	0.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	102	0	0	NA	11qB3	chr11-69590981-82929860	4	3	1	0.9	4.195180026	NA	1	0.932262228	sgMsh2	cell line
chr11	50237259	50237259	T	A	ENSMUST00000102772.3	1	ENSMUSG00000020377	missense	N/I	55	Ltc4s	ENSMUST00000102772.3:c.164A>T	ENSMUSP00000099833.3:p.Asn55Ile	H-2-Kb	8	11	1	ICSEYFPL	NCSEYFPL	SMMPMBEC	163.207	1944.196	11.912	35	0.286	262.12	3149.402	12.015	8197	536.95	3700.2	307.1	2598.603386	217.1400833	1944.195797	163.2074578	M2_p20	0.271428571	0.371428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.307	35	0	0	NA	11qB1.3	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr11	50969374	50969374	G	A	ENSMUST00000213259.1	5	ENSMUSG00000050343	missense	A/T	119	Olfr1378	ENSMUST00000213259.1:c.355G>A	ENSMUSP00000149432.1:p.Ala119Thr	H-2-Kb	9	10	2	MTYDRYVAI	MAYDRYVAI	NetMHCpan	14.9	14.4	0.966	610	0.026	36.588	30.259	0.827	27.08	30	14.4	14.9	39.27443988	54.08913049	33.43874735	43.17675507	M2_p20	-0.014285714	-0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.03	610	0	0	NA	11qB1.3	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	0.139839334	sgMsh2	cell line
chr11	34688463	34688463	A	T	ENSMUST00000093193.11	1	ENSMUSG00000020143	missense	L/M	708	Dock2	ENSMUST00000093193.11:c.2122T>A	ENSMUSP00000090884.5:p.Leu708Met	H-2-Kb	9	11	1	MAYKKLMTV	LAYKKLMTV	NetMHCpan	53.3	93.4	1.752	336	0.208	111.459	136.253	1.222	92.9	63.29	93.4	53.3	179.1059444	159.628341	191.9773533	191.9773533	M2_p20	0.014285714	0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.212	336	0	0	NA	11qA4	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	0.988197962	sgMsh2	cell line
chr11	34688463	34688463	A	T	ENSMUST00000093193.11	1	ENSMUSG00000020143	missense	L/M	708	Dock2	ENSMUST00000093193.11:c.2122T>A	ENSMUSP00000090884.5:p.Leu708Met	H-2-Kb	9	3	9	IQQHFSATM	IQQHFSATL	NetMHC	108.3	43.99	0.406	336	0.208	432.806	302.966	0.7	43.99	108.3	87	183.1	518.9314595	682.5115418	629.8686601	853.5913393	M2_p20	-0.242857143	-0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.212	336	0	0	NA	11qA4	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	0.988197962	sgMsh2	cell line
chr11	86661194	86661194	A	G	ENSMUST00000018315.9	1	ENSMUSG00000018171	missense	Y/H	115	Vmp1	ENSMUST00000018315.9:c.343T>C	ENSMUSP00000018315.3:p.Tyr115His	H-2-Kb	9	7	5	LLYAHWIGL	LLYAYWIGL	NetMHCpan	66.1	64.6	0.977	122	0.189	122.818	88.463	0.72	68.97	110.04	64.6	66.1	130.6501763	162.970876	107.9567993	135.5969747	M2_p20	0.614285714	1.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.197	122	0	0	NA	11qC	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	0.918278294	sgMsh2	cell line
chr11	67211360	67211360	C	A	ENSMUST00000124516.7	1	ENSMUSG00000056328	missense	R/S	826	Myh1	ENSMUST00000124516.7:c.2476C>A	ENSMUSP00000117569.1:p.Arg826Ser	H-2-Kb	9	6	6	IQYNVSAFM	IQYNVRAFM	NetMHC	125.35	144.71	1.154	323	0.214	385.659	420.869	1.091	144.71	125.35	131.9	140.2	830.0609824	631.1171763	697.02764	656.5230826	M2_p20	0.728571429	0.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.214	323	0	0	NA	11qB3	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	0.997520584	sgMsh2	cell line
chr11	50237259	50237259	T	A	ENSMUST00000102772.3	1	ENSMUSG00000020377	missense	N/I	55	Ltc4s	ENSMUST00000102772.3:c.164A>T	ENSMUSP00000099833.3:p.Asn55Ile	H-2-Kb	9	10	2	VICSEYFPL	VNCSEYFPL	SMM	116.174	87.722	0.755	35	0.286	137.523	100.849	0.733	107.02	148.79	115.7	213.3	87.72229799	116.1742828	94.67820161	126.255411	M2_p20	0.271428571	1.2	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.307	35	0	0	NA	11qB1.3	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr11	61546578	61546578	A	C	ENSMUST00000179936.7	1	ENSMUSG00000001036	missense	I/S	56	Epn2	ENSMUST00000179936.7:c.167T>G	ENSMUSP00000136950.1:p.Ile56Ser	H-2-Kb	9	6	6	VAFSESMSM	VAFSEIMSM	NetMHCpan	123.9	82.3	0.664	153	0.19	145.532	154.465	1.061	140.62	155.51	82.3	123.9	168.310031	135.5532704	254.8296748	263.7849417	M2_p20	0.1	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.184	153	0	0	NA	11qB2	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	0.85768125	sgMsh2	cell line
chr11	58757857	58757857	G	A	ENSMUST00000215071.1	5	ENSMUSG00000107677	missense	S/N	64	Olfr316	ENSMUST00000215071.1:c.191G>A	ENSMUSP00000151136.1:p.Ser64Asn	H-2-Kb	9	5	7	PMYFLLNQL	PMYFLLSQL	SMM	69.841	60.969	0.873	626	0.112	256.406	183.625	0.716	298.82	430.35	478.1	884.5	60.9691303	69.84092778	68.43054518	82.46126636	M2_p20	0.842857143	0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.104	626	0	0	NA	11qB1.3	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	0.484776359	sgMsh2	cell line
chr11	121160505	121160505	T	C	ENSMUST00000039044.1	NA	ENSMUSG00000039321	missense	V/A	65	Uts2r	ENSMUST00000039044.1:c.194T>C	ENSMUSP00000046920.1:p.Val65Ala	H-2-Db	9	10	2	GAVGNVYTL	GVVGNVYTL	NetMHC	17.26	611.09	35.405	143	0.217	67.905	685.376	10.093	611.09	17.26	797.4	49	759.6612958	118.7462764	554.0768434	86.81004873	M2_p20	0.9	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.206	143	0	0	NA	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	0.960230095	sgMsh2	cell line
chr12	69190025	69190025	GT	G	ENSMUST00000021356.5	1	ENSMUSG00000020973	FS	T/X	770	Dnaaf2	ENSMUST00000021356.5:c.2308del	ENSMUSP00000021356.5:p.Thr770LeufsTer12	H-2-Db	9	5	7	SSLLNKLWF	SSLLNKTVV	NetMHC	102.74	8.12	0.079	386	0.236	148.467	27.724	0.187	8.12	102.74	17.2	273.1	38.24899249	138.2356312	40.41755147	158.6974688	M2_p20	0.842857143	0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.244	386	0	0	NA	12qC2	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr11	95969851	95969851	T	G	ENSMUST00000013559.2	1	ENSMUSG00000013415	missense	S/R	359	Igf2bp1	ENSMUST00000013559.2:c.1075A>C	ENSMUSP00000013559.2:p.Ser359Arg	H-2-Db	9	8	4	AAMRLQSHL	AAMSLQSHL	SMM	336.217	330.842	0.984	151	0.238	466.447	489.283	1.049	583.59	561.66	681.7	531.5	330.8415143	336.2172565	394.9753567	401.39319	M2_p20	-0.357142857	0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.225	151	0	0	NA	11qD	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr12	64967163	64967163	G	T	ENSMUST00000066296.8	1	ENSMUSG00000035614	missense	S/I	396	Togaram1	ENSMUST00000066296.8:c.1187G>T	ENSMUSP00000070382.7:p.Ser396Ile	H-2-Kb	8	10	2	IILLYNLL	ISLLYNLL	NetMHC	6.79	3.61	0.532	314	0.067	15.257	7.303	0.479	3.61	6.79	5.8	15.9	8.805215715	14.61302072	9.478508415	16.50973111	M2_p20	2.128571429	2.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.065	314	0	0	NA	12qC1	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	0.302985224	sgMsh2	cell line
chr12	75716177	75716177	C	A	ENSMUST00000021450.5	1	ENSMUSG00000021054	missense	G/V	410	Sgpp1	ENSMUST00000021450.5:c.1229G>T	ENSMUSP00000021450.4:p.Gly410Val	H-2-Kb	8	8	4	ITYVMVGF	ITYGMVGF	NetMHCpan	71.7	131.8	1.838	223	0.211	126.749	402.15	3.173	373.04	92.9	131.8	71.7	585.787365	231.6007706	431.2608157	160.597951	M2_p20	1.528571429	1.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.223	223	0	0	NA	12qC3	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr12	75462326	75462326	C	A	ENSMUST00000021447.8	1	ENSMUSG00000021051	missense	R/M	393	Ppp2r5e	ENSMUST00000021447.8:c.1178G>T	ENSMUSP00000021447.7:p.Arg393Met	H-2-Kb	8	4	8	IMFSSLYM	IMFSSLYR	NetMHCpan	45.2	3047	67.412	277	0.069	183.13	2716.691	14.835	3428.33	99.12	3047	45.2	1488.469706	267.1406633	2386.382195	295.6242117	M2_p20	1.071428571	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.074	277	0	0	NA	12qC3	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	0.344937024	sgMsh2	cell line
chr12	64967163	64967163	G	T	ENSMUST00000066296.8	1	ENSMUSG00000035614	missense	S/I	396	Togaram1	ENSMUST00000066296.8:c.1187G>T	ENSMUSP00000070382.7:p.Ser396Ile	H-2-Kb	8	9	3	FIILLYNL	FISLLYNL	SMM	95.662	517.297	5.408	314	0.067	120.913	842.07	6.964	1235.34	126.55	1031.4	453	517.2970479	95.66211974	652.7396586	115.2762924	M2_p20	2.228571429	2.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.065	314	0	0	NA	12qC1	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	0.302985224	sgMsh2	cell line
chr12	46700672	46700672	GT	G	ENSMUST00000021438.7	1	ENSMUSG00000021047	FS	N/X	274	Nova1	ENSMUST00000021438.7:c.821del	ENSMUSP00000021438.6:p.Asn274ThrfsTer16	H-2-Kb	8	5	7	TGSPYATL	TGSPYANT	NetMHC	185.11	5481.15	29.61	118	0.178	207.225	3400.15	16.408	5481.15	185.11	4628.9	187.6	2171.400833	226.8506354	1650.973111	251.0383085	M2_p20	0.114285714	0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.178	118	0	0	NA	12qB3	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	0.829713383	sgMsh2	cell line
chr12	69190025	69190025	GT	G	ENSMUST00000021356.5	1	ENSMUSG00000020973	FS	T/X	770	Dnaaf2	ENSMUST00000021356.5:c.2308del	ENSMUSP00000021356.5:p.Thr770LeufsTer12	H-2-Kb	8	14	0	KTYLTLTL	NA	NetMHCpan	98.5	NA	NA	386	0.236	204.29	NA	NA	NA	217.21	NA	98.5	NA	205.466016	NA	203.114066	M2_p20	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.244	386	0	0	NA	12qC2	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr12	72556654	72556654	T	A	ENSMUST00000044352.7	1	ENSMUSG00000034501	missense	S/T	489	Pcnx4	ENSMUST00000044352.7:c.1465T>A	ENSMUSP00000038916.6:p.Ser489Thr	H-2-Kb	8	10	2	VTIGFTRA	VSIGFTRA	SMMPMBEC	216.641	129.64	0.598	264	0.027	273.909	146.801	0.536	79.74	275.71	178.1	397.8	163.9607892	272.1071791	129.6402918	216.6406749	M2_p20	0.4	0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.04	264	0	0	NA	12qC3	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	0.186452446	sgMsh2	cell line
chr12	11458657	11458657	C	CT	ENSMUST00000124065.1	2	ENSMUSG00000086022	FS	P/PX	860	Rad51ap2	ENSMUST00000124065.1:c.2585dup	ENSMUSP00000128854.1:p.Leu862PhefsTer4	H-2-Kb	8	8	6	RNAPFFVL	RNAPFLSC	NetMHCpan	115.7	4040.8	34.925	131	0.206	369.021	6122.447	16.591	17561.47	576.08	4040.8	115.7	4214.44121	272.7344509	8030.452175	465.3074435	M2_p20	1.471428571	1.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.22	131	0	0	NA	12qA1.1	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr12	54685943	54685943	TG	T	ENSMUST00000161592.7	1	ENSMUSG00000054302	FS	H/X	127	Eapp	ENSMUST00000161592.7:c.381del	ENSMUSP00000123698.1:p.His127GlnfsTer52	H-2-Kb	8	53	0	SLFQTVML	NA	SMMPMBEC	306.719	NA	NA	205	0.322	372.068	NA	NA	NA	617.01	NA	379.6	NA	364.5356443	NA	306.71852	M2_p20	1.757142857	1.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.313	205	0	0	NA	12qC1	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr11	117772845	117772845	T	C	ENSMUST00000026659.9	1	ENSMUSG00000025572	missense	I/V	514	Tmc6	ENSMUST00000026659.9:c.1540A>G	ENSMUSP00000026659.3:p.Ile514Val	H-2-Kb	8	10	2	LVLKMAVL	LILKMAVL	SMMPMBEC	395.13	281.67	0.713	93	0.247	457.257	401.56	0.878	565.93	825.08	490.7	423.9	312.4208431	490.6140712	281.6696149	395.1299959	M2_p20	2.257142857	2.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.27	93	0	0	NA	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr12	31708932	31708932	A	G	ENSMUST00000236002.1	NA	ENSMUSG00000044067	missense	I/T	397	Gpr22	ENSMUST00000236002.1:c.1190T>C	ENSMUSP00000158030.1:p.Ile397Thr	H-2-Kb	8	8	4	GTTTFHPL	GTTIFHPL	SMMPMBEC	181.443	200.789	1.107	410	0.237	344.511	294.142	0.854	1035.85	893.41	338.4	454.2	249.8848923	234.8226582	200.7890385	181.4429089	M2_p20	-0.042857143	-0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.245	410	0	0	NA	12qA3	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr12	31709410	31709410	T	C	ENSMUST00000236002.1	NA	ENSMUSG00000044067	missense	S/G	238	Gpr22	ENSMUST00000236002.1:c.712A>G	ENSMUSP00000158030.1:p.Ser238Gly	H-2-Kb	9	9	3	STGEYYTEL	STSEYYTEL	NetMHC	37.25	32.97	0.885	255	0.059	75.815	105.246	1.388	32.97	37.25	31.7	45.4	181.1798935	108.9205937	177.521108	106.2306894	M2_p20	-0.985714286	-0.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.068	255	0	0	NA	12qA3	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	0.316969157	sgMsh2	cell line
chr11	120817145	120817145	A	T	ENSMUST00000055655.8	1	ENSMUSG00000025153	missense	L/M	694	Fasn	ENSMUST00000055655.8:c.2080T>A	ENSMUSP00000052872.7:p.Leu694Met	H-2-Kb	9	7	5	IAPTMLQAL	IAPTLLQAL	NetMHC	97.26	145.66	1.498	165	0.23	258.506	379.813	1.469	145.66	97.26	202.3	158	557.3268932	359.0128555	577.0985724	406.6773641	M2_p20	0.785714286	0.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.211	165	0	0	NA	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	0.98353665	sgMsh2	cell line
chr11	120134832	120134832	A	G	ENSMUST00000103018.10	1	ENSMUSG00000061306	missense	M/T	226	Slc38a10	ENSMUST00000103018.10:c.677T>C	ENSMUSP00000099307.4:p.Met226Thr	H-2-Kb	9	11	1	TSSIFASSL	MSSIFASSL	NetMHCpan	80.7	63.8	0.791	228	0.193	321.872	325.304	1.011	80.3	100.18	63.8	80.7	570.3087043	561.1900987	641.5787927	543.5631415	M2_p20	1.5	1.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.201	228	0	0	NA	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	0.936923539	sgMsh2	cell line
chr12	75462326	75462326	C	A	ENSMUST00000021447.8	1	ENSMUSG00000021051	missense	R/M	393	Ppp2r5e	ENSMUST00000021447.8:c.1178G>T	ENSMUSP00000021447.7:p.Arg393Met	H-2-Kb	9	4	8	IMFSSLYMI	IMFSSLYRI	NetMHC	108.55	86.63	0.798	277	0.069	117.656	92.983	0.79	86.63	108.55	56.1	111.4	99.3367621	123.9110394	147.6556263	186.3159349	M2_p20	1.442857143	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.074	277	0	0	NA	12qC3	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	0.344937024	sgMsh2	cell line
chr12	64967163	64967163	G	T	ENSMUST00000066296.8	1	ENSMUSG00000035614	missense	S/I	396	Togaram1	ENSMUST00000066296.8:c.1187G>T	ENSMUSP00000070382.7:p.Ser396Ile	H-2-Kb	9	9	3	FIILLYNLL	FISLLYNLL	SMM	104.739	350.841	3.35	314	0.067	127.044	543.413	4.277	635.75	114.37	1055.4	694.2	350.8407252	104.7393803	451.0762902	139.7172407	M2_p20	2.128571429	2.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.065	314	0	0	NA	12qC1	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	0.302985224	sgMsh2	cell line
chr12	84106461	84106461	G	T	ENSMUST00000056822.3	1	ENSMUSG00000043487	missense	G/V	159	Acot6	ENSMUST00000056822.3:c.476G>T	ENSMUSP00000056131.3:p.Gly159Val	H-2-Kb	9	11	1	VIIDLYGSI	GIIDLYGSI	NetMHCpan	77.9	1628.7	20.908	187	0.203	151.163	1429.64	9.458	2254.44	116.01	1628.7	77.9	1230.580418	226.5217979	933.7916798	186.3159349	M2_p20	0.971428571	1.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.213	187	0	0	NA	12qD1	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	0.992859273	sgMsh2	cell line
chr12	31547124	31547124	T	C	ENSMUST00000001253.7	1	ENSMUSG00000020651	missense	N/S	248	Slc26a4	ENSMUST00000001253.7:c.743A>G	ENSMUSP00000001253.7:p.Asn248Ser	H-2-Kb	9	5	7	VSTKNYSGI	VSTKNYNGI	NetMHC	120.76	277.9	2.301	200	0.185	269.151	316.632	1.176	277.9	120.76	586.2	300.6	296.558243	258.8868552	336.7053368	279.4151821	M2_p20	-0.871428571	-0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.206	200	0	0	NA	12qA2	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	0.960230095	sgMsh2	cell line
chr12	69190025	69190025	GT	G	ENSMUST00000021356.5	1	ENSMUSG00000020973	FS	T/X	770	Dnaaf2	ENSMUST00000021356.5:c.2308del	ENSMUSP00000021356.5:p.Thr770LeufsTer12	H-2-Kb	9	11	1	LWFKTYLTL	NA	SMM	52.736	NA	NA	386	0.236	87.638	NA	NA	NA	123.24	NA	86.1	NA	52.73634174	NA	89.17641311	M2_p20	0.542857143	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.244	386	0	0	NA	12qC2	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr12	72556654	72556654	T	A	ENSMUST00000044352.7	1	ENSMUSG00000034501	missense	S/T	489	Pcnx4	ENSMUST00000044352.7:c.1465T>A	ENSMUSP00000038916.6:p.Ser489Thr	H-2-Kb	9	10	2	VTIGFTRAF	VSIGFTRAF	NetMHC	135.99	77.66	0.571	264	0.027	241.68	150.693	0.624	77.66	135.99	132.3	200.8	169.0869148	282.5595563	216.3963843	351.7628732	M2_p20	0.9	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.04	264	0	0	NA	12qC3	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	0.186452446	sgMsh2	cell line
chr11	116047690	116047690	T	C	ENSMUST00000021116.11	1	ENSMUSG00000020770	missense	F/L	40	Unk	ENSMUST00000021116.11:c.118T>C	ENSMUSP00000021116.5:p.Phe40Leu	H-2-Kb	9	3	9	QHYTYLKEL	QHYTYLKEF	NetMHC	157.48	600.28	3.812	132	0.22	176.351	480.118	2.723	600.28	157.48	601.2	194.9	266.1399065	157.8010905	359.9564831	208.0894201	M2_p20	-0.442857143	-0.442857143	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.213	132	0	0	NA	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	0.992859273	sgMsh2	cell line
chr11	95969851	95969851	T	G	ENSMUST00000013559.2	1	ENSMUSG00000013415	missense	S/R	359	Igf2bp1	ENSMUST00000013559.2:c.1075A>C	ENSMUSP00000013559.2:p.Ser359Arg	H-2-Kb	9	8	4	AAMRLQSHL	AAMSLQSHL	NetMHC	159.08	222.94	1.401	151	0.238	409.595	316.523	0.773	222.94	159.08	226.5	212.3	406.5462879	606.8900259	544.816184	635.696763	M2_p20	-0.357142857	0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.225	151	0	0	NA	11qD	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr12	75716177	75716177	C	A	ENSMUST00000021450.5	1	ENSMUSG00000021054	missense	G/V	410	Sgpp1	ENSMUST00000021450.5:c.1229G>T	ENSMUSP00000021450.4:p.Gly410Val	H-2-Kb	9	11	1	VMVGFSITF	GMVGFSITF	SMM	93.349	507.119	5.433	223	0.211	171.911	1429.349	8.314	2096.18	191.68	3962.6	381.5	507.1191374	93.34907095	762.5178243	152.1423079	M2_p20	1.771428571	2.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.223	223	0	0	NA	12qC3	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr12	55707969	55707969	A	G	ENSMUST00000085385.6	1	ENSMUSG00000021027	missense	L/S	1179	Ralgapa1	ENSMUST00000085385.6:c.3536T>C	ENSMUSP00000082503.5:p.Leu1179Ser	H-2-Kb	9	4	8	YNIMHCGSL	YNIMHCGLL	NetMHCpan	97.8	114.6	1.172	232	0.164	248.131	188.429	0.759	147.64	214.91	114.6	97.8	277.4022632	379.4110717	229.2186762	281.3519957	M2_p20	1.185714286	1.185714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.186	232	0	0	NA	12qC1	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	0.867003872	sgMsh2	cell line
chr12	46700672	46700672	GT	G	ENSMUST00000021438.7	1	ENSMUSG00000021047	FS	N/X	274	Nova1	ENSMUST00000021438.7:c.821del	ENSMUSP00000021438.6:p.Asn274ThrfsTer16	H-2-Kb	9	10	2	ATLLKCYQL	NA	NetMHC	299.19	NA	NA	118	0.178	464.002	NA	NA	NA	299.19	NA	553.1	NA	521.3267383	NA	406.6773641	M2_p20	0.742857143	0.857142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.178	118	0	0	NA	12qB3	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	0.829713383	sgMsh2	cell line
chr12	70163398	70163398	CG	C	ENSMUST00000169156.2	5	ENSMUSG00000090121	FS	R/X	116	Abhd12b	ENSMUST00000169156.2:c.350del	ENSMUSP00000134568.1:p.Gly117GlufsTer31	H-2-Kb	9	28	0	VMGTRLLSI	NA	SMMPMBEC	204.762	NA	NA	146	0.233	287.971	NA	NA	NA	340.92	NA	1031.1	NA	235.0228021	NA	204.7623004	M2_p20	0.814285714	1.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.217	146	0	0	NA	12qC2	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr12	51999859	51999859	T	G	ENSMUST00000021339.7	1	ENSMUSG00000020956	missense	N/H	66	Dtd2	ENSMUST00000021339.7:c.196A>C	ENSMUSP00000021339.7:p.Asn66His	H-2-Kb	9	6	6	VNTLLHVKL	VNTLLNVKL	NetMHCpan	212.6	1257.5	5.915	79	0.152	402.088	1117.492	2.779	1647.25	460.42	1257.5	212.6	977.4847712	462.4981501	708.3534281	343.7557727	M2_p20	1.114285714	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.181	79	0	0	NA	12qC1	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	0.843697316	sgMsh2	cell line
chr11	119743894	119743894	A	G	ENSMUST00000026671.12	1	ENSMUSG00000025583	missense	I/V	179	Rptor	ENSMUST00000026671.12:c.535A>G	ENSMUSP00000026671.6:p.Ile179Val	H-2-Kb	9	10	2	SVYDLQTWM	SIYDLQTWM	SMM	254.748	263.093	1.033	394	0.15	299.044	313.002	1.047	523.68	474.28	285.4	263.7	263.0934282	254.7475407	340.6042008	334.3874735	M2_p20	-0.6	-0.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.139	394	0	0	NA	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	0.647922248	sgMsh2	cell line
chr11	102061618	102061618	G	A	ENSMUST00000017458.10	1	ENSMUSG00000017314	missense	A/V	343	Mpp2	ENSMUST00000017458.10:c.1028C>T	ENSMUSP00000017458.3:p.Ala343Val	H-2-Kb	9	5	7	LIYEEVVRM	LIYEEVARM	NetMHCpan	384	183	0.477	29	0.276	422.457	242.216	0.573	185.13	506.32	183	384	299.3022626	431.6283877	304.9650004	413.2853397	M2_p20	-0.357142857	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.347	29	0	0	NA	11qD	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr11	114987405	114987405	T	G	ENSMUST00000045075.2	1	ENSMUSG00000034641	missense	T/P	94	Cd300ld	ENSMUST00000045075.2:c.280A>C	ENSMUSP00000047022.2:p.Thr94Pro	H-2-Kb	9	4	8	RDFIFTVPM	RDFIFTVTM	SMMPMBEC	413.285	752.056	1.82	460	0.211	465.648	927.044	1.991	2749.39	1529.58	988.9	447	865.1870294	484.2950164	752.0556875	413.2853397	M2_p20	1.985714286	1.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.223	460	0	0	NA	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr12	103950807	103950807	A	G	ENSMUST00000122229.7	1	ENSMUSG00000072849	missense	V/A	201	Serpina1e	ENSMUST00000122229.7:c.602T>C	ENSMUSP00000113606.1:p.Val201Ala	H-2-Db	9	10	2	FALANYILF	FVLANYILF	NetMHC	10.9	298.56	27.391	367	0.038	33.881	270.226	7.976	298.56	10.9	616.6	30.9	241.8911616	37.8111599	235.2718676	36.86124504	M2_p20	1.7	1.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.041	367	0	0	NA	12qE	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	0.191113757	sgMsh2	cell line
chr13	27606928	27606928	A	G	ENSMUST00000080595.2	1	ENSMUSG00000021347	missense	I/T	58	Prl7b1	ENSMUST00000080595.2:c.173T>C	ENSMUSP00000079431.2:p.Ile58Thr	H-2-Db	9	8	4	SQHTNSLAI	SQHINSLAI	NetMHC	20.86	31.15	1.493	340	0.124	83.39	81.324	0.975	31.15	20.86	45.8	51.8	116.8476547	114.9793899	178.4719628	172.4129966	M2_p20	0.271428571	0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.13	340	0	0	NA	13qA3.1	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	1	0.605970448	sgMsh2	cell line
chr13	61538449	61538449	G	A	ENSMUST00000223778.1	NA	ENSMUSG00000074871	missense	A/V	240	Ctsm	ENSMUST00000223778.1:c.719C>T	ENSMUSP00000153101.1:p.Ala240Val	H-2-Db	9	8	4	NAVVSIGPI	NAVASIGPI	NetMHC	234.8	430.18	1.832	361	0.097	430.452	722.865	1.679	430.18	234.8	1107.1	787.9	836.7967793	474.9194979	608.9336864	385.98462	M2_p20	2.085714286	2.085714286	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.099	361	0	0	NA	13qB2	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	1	0.461469803	sgMsh2	cell line
chr12	117974938	117974938	G	A	ENSMUST00000084806.6	1	ENSMUSG00000018581	missense	A/V	3265	Dnah11	ENSMUST00000084806.6:c.9794C>T	ENSMUSP00000081867.6:p.Ala3265Val	H-2-Kb	8	7	5	KSFAVAGL	KSFAAAGL	NetMHC	11.66	16.83	1.443	136	0.279	23.502	30.038	1.278	16.83	11.66	34.2	31.4	28.6906244	22.52890066	31.38629122	24.47597495	M2_p20	1.885714286	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.242	136	0	0	NA	12qF2	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr13	22852362	22852362	A	T	ENSMUST00000228645.1	NA	ENSMUSG00000063998	missense	L/H	45	Vmn1r211	ENSMUST00000228645.1:c.134T>A	ENSMUSP00000154146.1:p.Leu45His	H-2-Kb	8	7	5	IHLIHAHL	IHLILAHL	NetMHC	14.77	31.74	2.149	447	0.3	36.842	77.668	2.108	31.74	14.77	111.6	76.5	77.39982879	34.89313575	77.93633877	38.79180607	M2_p20	0.614285714	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.3	447	0	0	NA	13qA3.1	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr12	98275382	98275382	T	C	ENSMUST00000075072.5	1	ENSMUSG00000021886	missense	M/T	98	Gpr65	ENSMUST00000075072.5:c.293T>C	ENSMUSP00000074581.4:p.Met98Thr	H-2-Kb	8	6	6	VFFTYTNF	VFFTYMNF	SMMPMBEC	20.358	18.019	0.885	300	0.257	21.686	17.92	0.826	17.82	22.25	45.7	37.4	16.50973111	21.12224132	18.01938647	20.35822922	M2_p20	0.314285714	0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.267	300	0	0	NA	12qE	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr12	108361203	108361203	T	C	ENSMUST00000021684.5	1	ENSMUSG00000021259	missense	F/L	425	Cyp46a1	ENSMUST00000021684.5:c.1273T>C	ENSMUSP00000021684.4:p.Phe425Leu	H-2-Kb	8	11	1	LTYFPFSL	FTYFPFSL	NetMHCpan	22.8	31.8	1.395	133	0.195	102.142	85.132	0.833	67.05	60.82	31.8	22.8	103.2143305	143.4630303	134.1961326	157.666708	M2_p20	0.714285714	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.205	133	0	0	NA	12qF1	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	0.955568784	sgMsh2	cell line
chr13	59821520	59821520	A	G	ENSMUST00000225576.1	NA	ENSMUSG00000035248	missense	F/S	187	Tut7	ENSMUST00000225576.1:c.560T>C	ENSMUSP00000153310.1:p.Phe187Ser	H-2-Kb	8	10	2	ISFIQISV	IFFIQISV	NetMHCpan	64	477	7.453	129	0.116	96.713	392.922	4.063	507.37	110.49	477	64	193.5263029	82.93541077	308.8445912	115.5420317	M2_p20	1.557142857	1.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.117	129	0	0	NA	13qB2	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	1	0.545373403	sgMsh2	cell line
chr13	54221267	54221267	TC	T	ENSMUST00000038101.3	1	ENSMUSG00000034987	FS	S/X	374	Hrh2	ENSMUST00000038101.3:c.1122del	ENSMUSP00000038170.3:p.Phe375SerfsTer53	H-2-Kb	8	26	0	SNHHYISV	NA	NetMHCpan	84.2	NA	NA	84	0.202	192.438	NA	NA	NA	148.97	NA	84.2	NA	235.9065504	NA	249.310173	M2_p20	-0.471428571	-0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.241	84	0	0	NA	13qB1	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr13	21133138	21133138	A	G	ENSMUST00000215804.1	5	ENSMUSG00000071522	missense	D/G	121	Olfr263	ENSMUST00000215804.1:c.362A>G	ENSMUSP00000149892.1:p.Asp121Gly	H-2-Kb	8	6	6	AVMSYGRF	AVMSYDRF	NetMHCpan	179.5	669.1	3.728	890	0.031	369.113	1168.699	3.166	957.84	239.64	669.1	179.5	2342.825811	997.1029474	1379.558114	498.5859086	M2_p20	0.271428571	0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.036	890	0	0	NA	13qA2	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	1	0.167807201	sgMsh2	cell line
chr13	22293541	22293541	T	C	ENSMUST00000228382.1	NA	ENSMUSG00000069295	missense	S/P	117	Vmn1r196	ENSMUST00000228382.1:c.349T>C	ENSMUSP00000154358.1:p.Ser117Pro	H-2-Kb	8	9	3	RAPWWGRL	RASWWGRL	NetMHCpan	195.9	896.8	4.578	367	0.153	341.715	1061.965	3.108	1423.61	271.58	896.8	195.9	1129.11974	421.444121	994.8096742	411.8508816	M2_p20	-0.385714286	-0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.161	367	0	0	NA	13qA3.1	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	1	0.750471093	sgMsh2	cell line
chr12	112605379	112605379	A	G	ENSMUST00000101029.3	1	ENSMUSG00000037679	missense	N/S	614	Inf2	ENSMUST00000101029.3:c.1841A>G	ENSMUSP00000098591.2:p.Asn614Ser	H-2-Kb	8	10	2	RSSMWATL	RNSMWATL	SMMPMBEC	258.071	537.948	2.084	32	0.344	292.61	609.155	2.082	751.09	281.52	336.2	303.7	680.361923	367.908651	537.9476318	258.0714726	M2_p20	0.614285714	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.333	32	0	0	NA	12qF1	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr13	65153002	65153002	G	T	ENSMUST00000214214.1	5	ENSMUSG00000049806	missense	Q/H	259	Olfr466	ENSMUST00000214214.1:c.777G>T	ENSMUSP00000149328.1:p.Gln259His	H-2-Kb	8	5	7	VFFMYAHP	VFFMYAQP	SMMPMBEC	22.529	28.889	1.282	242	0.12	198.615	328.399	1.653	662.4	373.91	625.7	476.7	31.09853997	23.32061504	28.88949831	22.52890066	M2_p20	0.457142857	1.285714286	FALSE	FALSE	TRUE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.123	242	0	0	NA	13qB3	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	1	0.57334127	sgMsh2	cell line
chr13	21133138	21133138	A	G	ENSMUST00000215804.1	5	ENSMUSG00000071522	missense	D/G	121	Olfr263	ENSMUST00000215804.1:c.362A>G	ENSMUSP00000149892.1:p.Asp121Gly	H-2-Kb	9	8	4	MSYGRFTAI	MSYDRFTAI	NetMHCpan	8.3	8.5	1.024	890	0.031	24.276	25.369	1.045	12.96	12.39	8.5	8.3	42.18033261	39.54667729	37.77896015	36.16179668	M2_p20	0.314285714	0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.036	890	0	0	NA	13qA2	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	1	0.167807201	sgMsh2	cell line
chr12	98275382	98275382	T	C	ENSMUST00000075072.5	1	ENSMUSG00000021886	missense	M/T	98	Gpr65	ENSMUST00000075072.5:c.293T>C	ENSMUSP00000074581.4:p.Met98Thr	H-2-Kb	9	5	7	SVFFTYTNF	SVFFTYMNF	NetMHCpan	31	33.7	1.087	300	0.257	50.82	51.291	1.009	31.09	34.48	33.7	31	68.88267433	67.15989369	103.5738214	93.37916798	M2_p20	0.314285714	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.267	300	0	0	NA	12qE	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr13	19367757	19367757	A	G	ENSMUST00000222869.1	5	ENSMUSG00000003062	missense	L/P	173	Stard3nl	ENSMUST00000222869.1:c.518T>C	ENSMUSP00000152373.1:p.Leu173Pro	H-2-Kb	9	5	7	VSFTPLPSL	VSFTPLLSL	NetMHCpan	23.6	28.3	1.199	112	0.179	57.235	69.752	1.219	50.15	40.15	28.3	23.6	89.35317727	74.32073569	109.2068801	93.81018664	M2_p20	0.814285714	0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.186	112	0	0	NA	13qA2	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	1	0.867003872	sgMsh2	cell line
chr13	67542395	67542395	TA	T	ENSMUST00000181892.8	1	ENSMUSG00000095432	FS	Y/X	249	Zfp748	ENSMUST00000181892.8:c.745del	ENSMUSP00000137928.1:p.Tyr249ThrfsTer47	H-2-Kb	9	44	0	VAMPFVHSI	NA	NetMHCpan	32.9	NA	NA	167	0.156	254.832	NA	NA	NA	98.41	NA	32.9	NA	411.2538721	NA	441.8247089	M2_p20	1.114285714	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.157	167	0	0	NA	13qB3	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	1	0.731825849	sgMsh2	cell line
chr13	54221267	54221267	TC	T	ENSMUST00000038101.3	1	ENSMUSG00000034987	FS	S/X	374	Hrh2	ENSMUST00000038101.3:c.1122del	ENSMUSP00000038170.3:p.Phe375SerfsTer53	H-2-Kb	9	26	0	SNHHYISVL	NA	NetMHCpan	68.7	NA	NA	84	0.202	178.271	NA	NA	NA	141.14	NA	68.7	NA	229.67303	NA	215.4021332	M2_p20	0.571428571	0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.241	84	0	0	NA	13qB1	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr12	90332204	90332204	G	C	ENSMUST00000163134.7	5	ENSMUSG00000066392	missense	A/P	1504	Nrxn3	ENSMUST00000163134.7:c.4510G>C	ENSMUSP00000129678.1:p.Ala1504Pro	H-2-Kb	9	7	5	VGIVPAAAL	VGIVAAAAL	NetMHC	145.83	108.75	0.746	97	0.093	442.575	444.713	1.005	108.75	145.83	120.1	181.9	769.3252737	703.2504197	989.1223154	962.1659863	M2_p20	2.328571429	2.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.097	97	0	0	NA	12qD3	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	0.452147181	sgMsh2	cell line
chr13	65153002	65153002	G	T	ENSMUST00000214214.1	5	ENSMUSG00000049806	missense	Q/H	259	Olfr466	ENSMUST00000214214.1:c.777G>T	ENSMUSP00000149328.1:p.Gln259His	H-2-Kb	9	7	5	FMYAHPSAV	FMYAQPSAV	SMM	134.62	392.744	2.917	242	0.12	173.602	621.455	3.58	652.37	168.04	924.3	233.1	392.7443988	134.6201283	590.540925	179.1636906	M2_p20	0.128571429	0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.123	242	0	0	NA	13qB3	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	1	0.57334127	sgMsh2	cell line
chr13	73796782	73796782	T	C	ENSMUST00000017900.8	1	ENSMUSG00000017756	missense	V/A	471	Slc12a7	ENSMUST00000017900.8:c.1412T>C	ENSMUSP00000017900.7:p.Val471Ala	H-2-Kb	9	4	8	FIYLSCIAL	FIYLSCIVL	NetMHC	186.33	577	3.097	452	0.148	253.106	458.802	1.813	577	186.33	1438.1	591.2	325.9192408	231.2650474	340.6042008	274.9476424	M2_p20	2.042857143	2.285714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.154	452	0	0	NA	13qC1	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	1	0.717841915	sgMsh2	cell line
chr13	59821520	59821520	A	G	ENSMUST00000225576.1	NA	ENSMUSG00000035248	missense	F/S	187	Tut7	ENSMUST00000225576.1:c.560T>C	ENSMUSP00000153310.1:p.Phe187Ser	H-2-Kb	9	10	2	ISFIQISVV	IFFIQISVV	NetMHCpan	116.6	744.4	6.384	129	0.116	280.43	687.684	2.452	702.22	258.69	744.4	116.6	673.1471323	364.0072218	607.0856956	302.1690645	M2_p20	2.271428571	2.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.117	129	0	0	NA	13qB2	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	1	0.545373403	sgMsh2	cell line
chr12	116318844	116318844	A	C	ENSMUST00000100986.3	1	ENSMUSG00000021171	missense	E/A	138	Esyt2	ENSMUST00000100986.3:c.413A>C	ENSMUSP00000098548.2:p.Glu138Ala	H-2-Kb	9	5	7	FICQFIAKL	FICQFIEKL	NetMHC	274.03	1858.1	6.781	298	0.081	434.65	1868.7	4.299	1858.1	274.03	1879.3	413	1888.469608	820.5593529	1023.882217	456.2995075	M2_p20	1.142857143	2.2	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.076	298	0	0	NA	12qF2	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	0.354259647	sgMsh2	cell line
chr13	22806259	22806259	C	T	ENSMUST00000227265.1	NA	ENSMUSG00000071491	missense	G/E	87	Vmn1r209	ENSMUST00000227265.1:c.260G>A	ENSMUSP00000153997.1:p.Gly87Glu	H-2-Kb	9	5	7	KIIVYLERV	KIIVYLGRV	NetMHC	279.83	132.76	0.474	397	0.615	461.643	302.602	0.655	132.76	279.83	191.1	326.1	414.1045477	597.1865254	429.783759	640.1032025	M2_p20	1.057142857	1.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.597	397	0	0	NA	13qA3.1	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	3	1	sgMsh2	cell line
chr12	111678648	111678648	A	G	ENSMUST00000084947.9	1	ENSMUSG00000060950	missense	Y/C	6	Trmt61a	ENSMUST00000084947.9:c.17A>G	ENSMUSP00000082011.3:p.Tyr6Cys	H-2-Kb	9	1	6	MSFVACEEL	MSFVAYEEL	NetMHCpan	242.1	23.8	0.098	113	0.292	359.464	57.617	0.16	18.72	290.27	23.8	242.1	91.43448014	428.6570788	121.6886295	527.5334467	M2_p20	1.157142857	1.271428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.274	113	0	0	NA	12qF1	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr13	21133138	21133138	A	G	ENSMUST00000215804.1	5	ENSMUSG00000071522	missense	D/G	121	Olfr263	ENSMUST00000215804.1:c.362A>G	ENSMUSP00000149892.1:p.Asp121Gly	H-2-Kb	9	5	7	LAVMSYGRF	LAVMSYDRF	NetMHC	303.66	596.09	1.963	890	0.031	341.671	679.79	1.99	596.09	303.66	1509.6	334	755.2835049	459.3143352	604.2963902	349.3413547	M2_p20	0.271428571	1.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.036	890	0	0	NA	13qA2	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	1	0.167807201	sgMsh2	cell line
chr12	98275382	98275382	T	C	ENSMUST00000075072.5	1	ENSMUSG00000021886	missense	M/T	98	Gpr65	ENSMUST00000075072.5:c.293T>C	ENSMUSP00000074581.4:p.Met98Thr	H-2-Kb	9	11	1	TNFYSSTAF	MNFYSSTAF	SMM	318.5	323.676	1.016	300	0.257	365.539	317.878	0.87	312.08	327.2	253.8	411.6	323.6756285	318.5004131	476.7053215	403.8778168	M2_p20	0.542857143	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.267	300	0	0	NA	12qE	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr13	21639372	21639372	A	T	ENSMUST00000205631.2	3	ENSMUSG00000036658	missense	H/Q	50	Olfr11	ENSMUST00000205631.2:c.150T>A	ENSMUSP00000146091.1:p.His50Gln	H-2-Kb	9	4	8	LNIILVSQL	LNIILVSHL	NetMHCpan	301.4	162.3	0.538	278	0.299	381.332	323.554	0.848	210.34	350.33	162.3	301.4	533.469998	644.3324442	436.7671833	412.3348098	M2_p20	2.357142857	2.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.299	278	0	0	NA	13qA3.1	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr13	21674653	21674653	C	T	ENSMUST00000216083.1	5	ENSMUSG00000108534	missense	C/Y	97	Olfr1360	ENSMUST00000216083.1:c.290G>A	ENSMUSP00000149423.1:p.Cys97Tyr	H-2-Kb	9	7	5	SYGGYVAQL	SYGGCVAQL	SMMPMBEC	358.303	1154.117	3.221	279	0.301	444.053	1769.897	3.986	1793.53	366.78	3760.5	626.7	1746.264398	521.3267383	1154.11743	358.3026333	M2_p20	0.6	0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.309	279	0	0	NA	13qA3.1	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr12	103950807	103950807	A	G	ENSMUST00000122229.7	1	ENSMUSG00000072849	missense	V/A	201	Serpina1e	ENSMUST00000122229.7:c.602T>C	ENSMUSP00000113606.1:p.Val201Ala	H-2-Kb	9	10	2	FALANYILF	FVLANYILF	SMM	340.494	382.922	1.125	367	0.038	400.253	477.294	1.192	491.94	400.33	1285	555.1	382.9217191	340.4944207	462.6472659	400.1750427	M2_p20	1.7	1.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.041	367	0	0	NA	12qE	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	0.191113757	sgMsh2	cell line
chr13	65153002	65153002	G	T	ENSMUST00000214214.1	5	ENSMUSG00000049806	missense	Q/H	259	Olfr466	ENSMUST00000214214.1:c.777G>T	ENSMUSP00000149328.1:p.Gln259His	H-2-Kb	9	5	7	VFFMYAHPS	VFFMYAQPS	SMM	200.498	157.438	0.785	242	0.12	368.461	351.134	0.953	679.65	1103.78	442.7	405.6	157.438158	200.4979793	259.5673122	331.3217908	M2_p20	-0.057142857	1.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.123	242	0	0	NA	13qB3	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	1	0.57334127	sgMsh2	cell line
chr13	75878849	75878849	T	G	ENSMUST00000022078.11	1	ENSMUSG00000021589	missense	K/N	468	Rhobtb3	ENSMUST00000022078.11:c.1404A>C	ENSMUSP00000022078.5:p.Lys468Asn	H-2-Db	9	7	5	YGVSNETFL	YGVSKETFL	NetMHC	4.07	552.12	135.656	287	0.334	38.329	1708.94	44.587	552.12	4.07	1286.7	11.1	2131.179353	65.55714019	2236.505652	66.61468828	M2_p20	0.328571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.326	287	0	0	NA	13qC1	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr14	50362652	50362652	A	C	ENSMUST00000185091.1	2	ENSMUSG00000051969	missense	K/N	698	Tlr11	ENSMUST00000185091.1:c.2094A>C	ENSMUSP00000138814.1:p.Lys698Asn	H-2-Db	9	7	5	YGLENSICI	YGLEKSICI	NetMHC	9.59	3550.53	370.233	231	0.03	130.776	5573.571	42.619	3550.53	9.59	2986	27.9	7596.612958	233.6791692	7844.585485	233.6522675	M2_p20	1.071428571	1.071428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.039	231	0	0	NA	14qC1	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	0.181791134	sgMsh2	cell line
chr14	54953903	54953903	T	C	ENSMUST00000081857.13	1	ENSMUSG00000040752	missense	K/R	827	Myh6	ENSMUST00000081857.13:c.2480A>G	ENSMUSP00000080538.6:p.Lys827Arg	H-2-Db	9	8	4	MGVRNWPWM	MGVKNWPWM	NetMHC	40.86	76.96	1.884	130	0.146	125.953	185.906	1.476	76.96	40.86	90.9	58.9	348.8349575	226.7879629	280.9118113	193.0056399	M2_p20	-0.757142857	-0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.144	130	0	0	NA	14qC2	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	0.671228804	sgMsh2	cell line
chr14	54726814	54726814	T	C	ENSMUST00000022787.7	1	ENSMUSG00000022180	missense	N/S	394	Slc7a8	ENSMUST00000022787.7:c.1181A>G	ENSMUSP00000022787.6:p.Asn394Ser	H-2-Kb	8	10	2	ISYLFYGV	INYLFYGV	NetMHC	2.06	2.49	1.209	237	0.19	2.163	4.067	1.88	2.49	2.06	4.3	3.3	3.834775994	2.073671696	4.696128803	2.252890066	M2_p20	1	1.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.205	237	0	0	NA	14qC2	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	0.955568784	sgMsh2	cell line
chr14	20467483	20467483	AG	A	ENSMUST00000100844.5	1	ENSMUSG00000021814	FS	P/X	156	Anxa7	ENSMUST00000100844.5:c.467del	ENSMUSP00000098405.5:p.Pro156LeufsTer13	H-2-Kb	8	4	8	SSYPAFPL	SSYPAFPP	NetMHC	7.01	1551.08	221.267	134	0.194	14.476	701.254	48.441	1551.08	7.01	707.9	10.3	451.5855118	18.65262676	694.6083504	26.77564861	M2_p20	0.442857143	0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.199	134	0	0	NA	14qA3	chr14-19751082-42003368	4	2	2	0.9	4.195180026	NA	1	0.927600917	sgMsh2	cell line
chr14	45614188	45614188	T	C	ENSMUST00000087320.12	1	ENSMUSG00000037697	missense	Y/C	511	Ddhd1	ENSMUST00000087320.12:c.1532A>G	ENSMUSP00000084577.5:p.Tyr511Cys	H-2-Kb	8	8	4	IMYCTSPL	IMYYTSPL	NetMHC	11.28	6.72	0.596	255	0.243	26.327	19.907	0.756	6.72	11.28	8.5	16.2	35.54184757	37.30267702	31.31410475	36.45356443	M2_p20	0.542857143	0.642857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.245	255	0	0	NA	14qC1	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr14	29988224	29988224	G	T	ENSMUST00000224797.1	NA	ENSMUSG00000015971	missense	R/M	316	Actr8	ENSMUST00000224797.1:c.947G>T	ENSMUSP00000153076.1:p.Arg316Met	H-2-Kb	8	9	3	VSMCFYWL	VSRCFYWL	NetMHCpan	18	44.3	2.461	233	0.21	18.823	33.596	1.785	38.96	18.69	44.3	18	19.57672319	18.95570756	28.23189304	19.26371303	M2_p20	1.142857143	1.2	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.204	233	0	0	NA	14qB	chr14-19751082-42003368	4	2	2	0.9	4.195180026	NA	1	0.950907472	sgMsh2	cell line
chr14	27493488	27493488	T	G	ENSMUST00000223689.1	NA	ENSMUSG00000046753	missense	D/A	365	Ccdc66	ENSMUST00000223689.1:c.1094A>C	ENSMUSP00000153023.1:p.Asp365Ala	H-2-Kb	8	6	6	WAVHFASL	WAVHFDSL	NetMHC	37.75	990.57	26.24	87	0.161	48.406	559.457	11.557	990.57	37.75	624.9	44	494.0148455	71.40687051	426.324214	52.8128981	M2_p20	1.485714286	1.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.158	87	0	0	NA	14qA3	chr14-19751082-42003368	4	2	2	0.9	4.195180026	NA	1	0.73648716	sgMsh2	cell line
chr13	77269907	77269907	T	G	ENSMUST00000168779.2	1	ENSMUSG00000071252	missense	L/V	737	2210408I21Rik	ENSMUST00000168779.2:c.2209T>G	ENSMUSP00000127449.1:p.Leu737Val	H-2-Kb	8	11	1	VAILTSPL	LAILTSPL	NetMHC	38.73	317.12	8.188	217	0.055	83.96	390.679	4.653	317.12	38.73	242.9	56.3	609.1720937	120.4314735	464.2372661	111.6194813	M2_p20	1.542857143	1.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.068	217	0	0	NA	13qC1	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	1	0.316969157	sgMsh2	cell line
chr14	52036009	52036009	A	G	ENSMUST00000214071.1	5	ENSMUSG00000044286	missense	M/T	34	Olfr221	ENSMUST00000214071.1:c.101T>C	ENSMUSP00000150675.1:p.Met34Thr	H-2-Kb	8	10	2	VTYAITVL	VMYAITVL	NetMHCpan	26.2	23.8	0.908	146	0.247	60.149	92.464	1.537	54.39	47.73	23.8	26.2	137.3219621	75.63799359	130.5389154	72.56713881	M2_p20	1.657142857	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.252	146	0	0	NA	14qC2	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr14	30565598	30565598	A	C	ENSMUST00000022529.7	1	ENSMUSG00000021957	missense	D/A	183	Tkt	ENSMUST00000022529.7:c.548A>C	ENSMUSP00000022529.6:p.Asp183Ala	H-2-Kb	8	8	4	AIFAINRL	AIFDINRL	NetMHCpan	63.2	123.2	1.949	121	0.289	133.004	297.159	2.234	429.52	121.55	123.2	63.2	314.5864409	164.7175978	279.7306149	144.4574685	M2_p20	1.342857143	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.321	121	0	0	NA	14qB	chr14-19751082-42003368	4	2	2	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr13	114826231	114826231	G	A	ENSMUST00000166176.8	1	ENSMUSG00000015536	missense	V/M	151	Mocs2	ENSMUST00000166176.8:c.451G>A	ENSMUSP00000125797.1:p.Val151Met	H-2-Kb	8	11	1	MSYAIDSL	VSYAIDSL	NetMHCpan	89.5	33.3	0.372	308	0.351	139.899	50.909	0.364	37.44	157.15	33.3	89.5	64.37837347	137.3219621	67.25738845	142.4754378	M2_p20	0.528571429	0.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.319	308	0	0	NA	13qD2.2	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr14	54953903	54953903	T	C	ENSMUST00000081857.13	1	ENSMUSG00000040752	missense	K/R	827	Myh6	ENSMUST00000081857.13:c.2480A>G	ENSMUSP00000080538.6:p.Lys827Arg	H-2-Kb	8	11	1	RNWPWMKL	KNWPWMKL	NetMHCpan	209.4	183.6	0.877	130	0.146	346.662	316.038	0.912	298.85	357.64	183.6	209.4	357.8821189	356.2377999	333.2268594	337.0854446	M2_p20	-0.728571429	-0.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.144	130	0	0	NA	14qC2	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	0.671228804	sgMsh2	cell line
chr14	23436016	23436016	TA	T	ENSMUST00000188285.6	1	ENSMUSG00000063142	FS	Y/X	680	Kcnma1	ENSMUST00000188285.6:c.2038del	ENSMUSP00000140275.1:p.Tyr680ThrfsTer31	H-2-Kb	8	8	4	AFFTARPV	NA	SMM	285.588	NA	NA	85	0.224	464.476	NA	NA	NA	585.6	NA	996.8	NA	285.5880296	NA	343.3523309	M2_p20	0.685714286	0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.245	85	0	0	NA	14qA3	chr14-19751082-42003368	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr14	54858102	54858102	A	G	ENSMUST00000081162.5	1	ENSMUSG00000057156	missense	F/L	50	Homez	ENSMUST00000081162.5:c.148T>C	ENSMUSP00000079929.5:p.Phe50Leu	H-2-Kb	9	11	1	LSYFPYPSL	FSYFPYPSL	NetMHCpan	8.8	10.2	1.159	96	0.188	22.2	23.683	1.067	14.85	12.77	10.2	8.8	32.51696473	31.63078717	42.68251484	37.17491635	M2_p20	-1.27E-16	-3.17E-17	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.206	96	0	0	NA	14qC2	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	0.960230095	sgMsh2	cell line
chr14	54726814	54726814	T	C	ENSMUST00000022787.7	1	ENSMUSG00000022180	missense	N/S	394	Slc7a8	ENSMUST00000022787.7:c.1181A>G	ENSMUSP00000022787.6:p.Asn394Ser	H-2-Kb	9	10	2	ISYLFYGVT	INYLFYGVT	NetMHC	14.21	24.5	1.724	237	0.19	20.404	26.318	1.29	24.5	14.21	17.3	15.5	33.42796971	31.41304236	28.13519957	25.30754397	M2_p20	1.014285714	1.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.205	237	0	0	NA	14qC2	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	0.955568784	sgMsh2	cell line
chr14	20467483	20467483	AG	A	ENSMUST00000100844.5	1	ENSMUSG00000021814	FS	P/X	156	Anxa7	ENSMUST00000100844.5:c.467del	ENSMUSP00000098405.5:p.Pro156LeufsTer13	H-2-Kb	9	4	8	SSYPAFPLF	SSYPAFPPV	NetMHCpan	27.1	15.6	0.576	134	0.194	48.269	40.616	0.841	6.33	33.86	15.6	27.1	65.63114787	62.67725963	95.33447955	102.6242509	M2_p20	0.957142857	0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.199	134	0	0	NA	14qA3	chr14-19751082-42003368	4	2	2	0.9	4.195180026	NA	1	0.927600917	sgMsh2	cell line
chr14	29988224	29988224	G	T	ENSMUST00000224797.1	NA	ENSMUSG00000015971	missense	R/M	316	Actr8	ENSMUST00000224797.1:c.947G>T	ENSMUSP00000153076.1:p.Arg316Met	H-2-Kb	9	9	3	VSMCFYWLM	VSRCFYWLM	SMM	22.086	32.742	1.483	233	0.21	24.996	45.085	1.804	100.09	57.04	51.6	26.1	32.74236157	22.08564057	38.57003207	23.89186213	M2_p20	1.528571429	1.528571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.204	233	0	0	NA	14qB	chr14-19751082-42003368	4	2	2	0.9	4.195180026	NA	1	0.950907472	sgMsh2	cell line
chr14	27493488	27493488	T	G	ENSMUST00000223689.1	NA	ENSMUSG00000046753	missense	D/A	365	Ccdc66	ENSMUST00000223689.1:c.1094A>C	ENSMUSP00000153023.1:p.Asp365Ala	H-2-Kb	9	5	7	RWAVHFASL	RWAVHFDSL	NetMHC	58.78	407.87	6.939	87	0.161	95.532	415.391	4.348	407.87	58.78	651.4	95.1	251.8314697	95.96436635	422.9119919	162.2743955	M2_p20	1.485714286	1.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.158	87	0	0	NA	14qA3	chr14-19751082-42003368	4	2	2	0.9	4.195180026	NA	1	0.73648716	sgMsh2	cell line
chr14	52372591	52372591	G	A	ENSMUST00000214980.1	5	ENSMUSG00000094140	missense	S/L	154	Olfr1512	ENSMUST00000214980.1:c.461C>T	ENSMUSP00000149717.1:p.Ser154Leu	H-2-Kb	9	3	9	VAGAWVAGL	VAGAWVAGS	NetMHC	82.47	7842.16	95.091	250	0.252	247.758	4683.545	18.904	7842.16	82.47	10553.1	219.3	1130.082111	299.9922256	1524.930322	276.216743	M2_p20	1.414285714	1.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.252	250	0	0	NA	14qC2	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr13	75878849	75878849	T	G	ENSMUST00000022078.11	1	ENSMUSG00000021589	missense	K/N	468	Rhobtb3	ENSMUST00000022078.11:c.1404A>C	ENSMUSP00000022078.5:p.Lys468Asn	H-2-Kb	9	10	2	SNETFLSFL	SKETFLSFL	NetMHC	152.36	2784.6	18.276	287	0.334	305.223	2383.314	7.808	2784.6	152.36	3434.7	227.4	1982.028979	421.8033261	1691.414308	383.0451784	M2_p20	1.171428571	1.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.326	287	0	0	NA	13qC1	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr14	30565598	30565598	A	C	ENSMUST00000022529.7	1	ENSMUSG00000021957	missense	D/A	183	Tkt	ENSMUST00000022529.7:c.548A>C	ENSMUSP00000022529.6:p.Asp183Ala	H-2-Kb	9	7	5	VAIFAINRL	VAIFDINRL	NetMHCpan	105.3	537.5	5.104	121	0.289	203.936	485.56	2.381	877.91	173.39	537.5	105.3	433.6206938	234.4822647	361.6179668	276.8534884	M2_p20	1.342857143	2.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.321	121	0	0	NA	14qB	chr14-19751082-42003368	4	2	2	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr14	34594872	34594872	T	C	ENSMUST00000022331.2	1	ENSMUSG00000021799	missense	Y/C	320	Opn4	ENSMUST00000022331.2:c.959A>G	ENSMUSP00000022331.2:p.Tyr320Cys	H-2-Kb	9	6	6	VAFAGCSHI	VAFAGYSHI	NetMHCpan	125.5	15.8	0.126	135	0.17	316.575	52.299	0.165	26.39	294.11	15.8	125.5	87.5205423	410.3080144	78.20778752	339.0392667	M2_p20	1.028571429	1.7	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.183	135	0	0	NA	14qB	chr14-19751082-42003368	4	2	2	0.9	4.195180026	NA	1	0.853019939	sgMsh2	cell line
chr14	29170631	29170631	A	T	ENSMUST00000022567.8	1	ENSMUSG00000021991	missense	F/Y	418	Cacna2d3	ENSMUST00000022567.8:c.1253T>A	ENSMUSP00000022567.7:p.Phe418Tyr	H-2-Kb	9	6	6	ANKGFYTQI	ANKGFFTQI	NetMHCpan	153.5	133	0.866	171	0.211	222.545	313.745	1.41	417.88	298.99	133	153.5	384.6892055	273.5961615	242.8007366	171.4944225	M2_p20	-0.357142857	-0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.229	171	0	0	NA	14qA3	chr14-19751082-42003368	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr14	50453867	50453867	G	T	ENSMUST00000214792.1	5	ENSMUSG00000095917	missense	A/S	272	Olfr740	ENSMUST00000214792.1:c.814G>T	ENSMUSP00000148916.1:p.Ala272Ser	H-2-Kb	9	11	1	SGMQKLVTL	AGMQKLVTL	NetMHCpan	247.6	429.1	1.733	291	0.268	423.556	718.749	1.697	707.62	313.47	429.1	247.6	968.523137	625.3310593	729.8775406	533.6419961	M2_p20	0.8	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.264	291	0	0	NA	14qC1	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr13	75878849	75878849	T	G	ENSMUST00000022078.11	1	ENSMUSG00000021589	missense	K/N	468	Rhobtb3	ENSMUST00000022078.11:c.1404A>C	ENSMUSP00000022078.5:p.Lys468Asn	H-2-Kb	9	9	3	VSNETFLSF	VSKETFLSF	SMM	343.645	425.706	1.239	287	0.334	405.045	443.114	1.094	688.38	363.15	407.4	540.2	425.7062242	343.6449768	460.5215948	446.9407979	M2_p20	0.128571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.326	287	0	0	NA	13qC1	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr14	55236120	55236120	A	G	ENSMUST00000022820.11	1	ENSMUSG00000022209	missense	T/A	79	Dhrs2	ENSMUST00000022820.11:c.235A>G	ENSMUSP00000022820.5:p.Thr79Ala	H-2-Kb	9	10	2	VAILKEEGL	VTILKEEGL	SMM	179.519	247.235	1.377	73	0.205	286.961	360.657	1.257	457.53	369.63	1051.7	952.1	247.2350273	179.5188262	263.7849417	204.2913602	M2_p20	0.114285714	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.235	73	0	0	NA	14qC3	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr14	52036009	52036009	A	G	ENSMUST00000214071.1	5	ENSMUSG00000044286	missense	M/T	34	Olfr221	ENSMUST00000214071.1:c.101T>C	ENSMUSP00000150675.1:p.Met34Thr	H-2-Kb	9	6	6	VVFLVTYAI	VVFLVMYAI	NetMHC	404.46	257.9	0.638	146	0.247	474.826	410.59	0.865	257.9	404.46	656.7	462	397.2921646	487.6519891	423.8869047	600.1364431	M2_p20	2.157142857	2.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.252	146	0	0	NA	14qC2	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr14	45614188	45614188	T	C	ENSMUST00000087320.12	1	ENSMUSG00000037697	missense	Y/C	511	Ddhd1	ENSMUST00000087320.12:c.1532A>G	ENSMUSP00000084577.5:p.Tyr511Cys	H-2-Kb	9	8	4	IMYCTSPLY	IMYYTSPLY	SMM	100.487	72.629	0.723	255	0.243	436.085	328.486	0.753	479.86	649.71	1452	1280.4	72.6289892	100.4870276	177.1128208	222.4590099	M2_p20	0.085714286	0.642857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.245	255	0	0	NA	14qC1	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr14	20467483	20467483	AG	A	ENSMUST00000100844.5	1	ENSMUSG00000021814	FS	P/X	156	Anxa7	ENSMUST00000100844.5:c.467del	ENSMUSP00000098405.5:p.Pro156LeufsTer13	H-2-Kb	10	4	8	SSYPAFPLFL	SSYPAFPPVS	NetMHCpan	24.8	345	13.911	134	0.194	482.067	1194.145	2.477	87.97	36.6	345	24.8	2043.289955	927.5343455	3522.572984	1054.047057	M2_p20	1.685714286	1.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.199	134	0	0	NA	14qA3	chr14-19751082-42003368	4	2	2	0.9	4.195180026	NA	1	0.927600917	sgMsh2	cell line
chr15	75597834	75597834	A	G	ENSMUST00000023243.10	1	ENSMUSG00000022579	missense	T/A	133	Gpihbp1	ENSMUST00000023243.10:c.397A>G	ENSMUSP00000023243.4:p.Thr133Ala	H-2-Db	9	10	2	SALCNIPPW	STLCNIPPW	SMMPMBEC	43.709	249.787	5.715	138	0.333	85.973	425.163	4.945	1274.99	88.65	308.8	114.3	541.5268566	83.29520473	249.7870966	43.70891238	M2_p20	0.457142857	0.957142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.351	138	0	0	NA	15qD3	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr14	123295446	123295446	T	C	ENSMUST00000000201.6	5	ENSMUSG00000000197	missense	M/V	1301	Nalcn	ENSMUST00000000201.6:c.3901A>G	ENSMUSP00000000201.5:p.Met1301Val	H-2-Db	10	2	10	FALLNAYTYV	FALLNAYTYM	NetMHC	4.32	3.83	0.887	105	0.229	175.667	148.861	0.847	3.83	4.32	6.2	10.4	307.0789168	407.6148523	291.521104	340.9337536	M2_p20	0.428571429	1.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	105	0	0	NA	14qE5	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	sgMsh2	cell line
chr14	65578034	65578034	T	C	ENSMUST00000022609.6	1	ENSMUSG00000022031	missense	M/V	189	Elp3	ENSMUST00000022609.6:c.565A>G	ENSMUSP00000022609.5:p.Met189Val	H-2-Kb	8	11	1	VGGTFMAL	MGGTFMAL	NetMHC	19.55	77.17	3.947	242	0.231	42.688	90.736	2.126	77.17	19.55	175.5	69.7	89.4828896	41.95077612	91.98986892	43.42501729	M2_p20	1.257142857	1.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.233	242	0	0	NA	14qD1	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr14	65975611	65975611	T	G	ENSMUST00000022616.13	1	ENSMUSG00000022037	missense	F/V	149	Clu	ENSMUST00000022616.13:c.445T>G	ENSMUSP00000022616.6:p.Phe149Val	H-2-Kb	8	8	4	SSPVYFWM	SSPFYFWM	NetMHCpan	60.6	40.4	0.667	152	0.243	147.752	201.93	1.367	223.25	116.55	40.4	60.6	180.6092545	178.9534189	234.2825811	206.8902384	M2_p20	0.614285714	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.252	152	0	0	NA	14qD1	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr14	123515710	123515710	C	A	ENSMUST00000000201.6	5	ENSMUSG00000000197	missense	R/I	288	Nalcn	ENSMUST00000000201.6:c.863G>T	ENSMUSP00000000201.5:p.Arg288Ile	H-2-Kb	8	6	6	VFLMYIAI	VFLMYRAI	SMM	80.675	70.265	0.871	211	0.242	117.27	70.672	0.603	62.95	152.93	94.9	239.3	70.26515361	80.67519058	71.07878574	81.60936526	M2_p20	2.571428571	2.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.224	211	0	0	NA	14qE5	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	sgMsh2	cell line
chr14	66004100	66004100	T	A	ENSMUST00000059970.8	1	ENSMUSG00000034450	missense	H/L	103	Gulo	ENSMUST00000059970.8:c.308A>T	ENSMUSP00000060912.7:p.His103Leu	H-2-Kb	8	11	1	LGLALSNL	HGLALSNL	NetMHC	204.75	1235.08	6.032	107	0.178	230.187	887.134	3.854	1235.08	204.75	1375.1	217.3	539.1877292	243.0748352	512.5544401	245.8895091	M2_p20	1.214285714	1.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.182	107	0	0	NA	14qD1	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	0.848358627	sgMsh2	cell line
chr15	3325898	3325898	C	A	ENSMUST00000069451.10	1	ENSMUSG00000055737	missense	R/M	301	Ghr	ENSMUST00000069451.10:c.902G>T	ENSMUSP00000069457.4:p.Arg301Met	H-2-Kb	8	4	8	VIFSKQQM	VIFSKQQR	NetMHCpan	188.2	12750.8	67.751	279	0.251	363.498	6741.575	18.546	9458.39	228.41	12750.8	188.2	2790.872523	500.8872766	4024.76011	498.5859086	M2_p20	-0.357142857	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.258	279	0	0	NA	15qA1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr14	108912776	108912776	T	C	ENSMUST00000100322.3	NA	ENSMUSG00000075478	missense	T/A	168	Slitrk1	ENSMUST00000100322.3:c.502A>G	ENSMUSP00000097897.2:p.Thr168Ala	H-2-Kb	8	9	3	ISALPANV	ISTLPANV	SMM	194.868	217.641	1.117	119	0.235	278.341	278.464	1	284.82	287.07	1132.8	711.5	217.6406428	194.8677632	272.1071791	269.6124854	M2_p20	0.814285714	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.231	119	0	0	NA	14qE3	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr15	55084094	55084094	A	G	ENSMUST00000023059.12	1	ENSMUSG00000022422	missense	V/A	230	Dscc1	ENSMUST00000023059.12:c.689T>C	ENSMUSP00000023059.6:p.Val230Ala	H-2-Kb	8	6	6	WSLDRAPL	WSLDRVPL	SMMPMBEC	220.668	636.414	2.884	125	0.344	309.984	790.887	2.551	1192.99	347.86	795.2	403.9	786.5747483	272.1071791	636.4144033	220.6683258	M2_p20	-0.142857143	-0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.342	125	0	0	NA	15qD1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr15	28367833	28367833	T	C	ENSMUST00000067048.7	5	ENSMUSG00000022262	missense	V/A	2788	Dnah5	ENSMUST00000067048.7:c.8363T>C	ENSMUSP00000069751.6:p.Val2788Ala	H-2-Kb	8	10	2	YAFNLRDL	YVFNLRDL	NetMHCpan	341.5	316.4	0.927	164	0.36	424.862	411.377	0.968	534.87	489.88	316.4	341.5	410.9036509	404.3337559	411.8508816	445.3895263	M2_p20	0.1	0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.347	164	0	0	NA	15qB1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr15	59055080	59055080	A	G	ENSMUST00000080371.7	1	ENSMUSG00000022353	missense	V/A	49	Mtss1	ENSMUST00000080371.7:c.146T>C	ENSMUSP00000079239.6:p.Val49Ala	H-2-Kb	8	10	2	VAAAAAFL	VVAAAAFL	SMM	209.768	213.177	1.016	67	0.313	408.682	394.328	0.965	688.72	553.48	479.1	482.6	213.1768301	209.7683683	309.5565516	334.7649647	M2_p20	2.228571429	2.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.311	67	0	0	NA	15qD1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr15	9704496	9704496	TA	T	ENSMUST00000041840.13	1	ENSMUSG00000072663	FS	F/X	410	Spef2	ENSMUST00000041840.13:c.1230del	ENSMUSP00000035762.7:p.Phe410LeufsTer27	H-2-Kb	9	12	0	VEFPYMNRL	NA	NetMHC	98.87	NA	NA	351	0.085	103.094	NA	NA	NA	98.87	NA	118.1	NA	104.7393803	NA	101.4495208	M2_p20	-0.342857143	-0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.071	351	0	0	NA	15qA1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	1	0.330953091	sgMsh2	cell line
chr14	101913334	101913334	C	A	ENSMUST00000100337.9	1	ENSMUSG00000033060	missense	S/R	1153	Lmo7	ENSMUST00000100337.9:c.3459C>A	ENSMUSP00000097910.3:p.Ser1153Arg	H-2-Kb	9	4	8	VTTDFSERL	VTTDFSESL	NetMHC	125.01	218.87	1.751	196	0.23	256.775	367.96	1.433	218.87	125.01	333.1	226.4	402.8190492	287.1507798	502.6318444	350.9538411	M2_p20	-0.914285714	-0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.23	196	0	0	NA	14qE2.3	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr15	3325898	3325898	C	A	ENSMUST00000069451.10	1	ENSMUSG00000055737	missense	R/M	301	Ghr	ENSMUST00000069451.10:c.902G>T	ENSMUSP00000069457.4:p.Arg301Met	H-2-Kb	9	4	8	VIFSKQQMI	VIFSKQQRI	NetMHC	128.02	112.77	0.881	279	0.251	167.824	129.667	0.773	112.77	128.02	141	229.5	118.334124	147.6080354	149.021867	188.039895	M2_p20	-0.357142857	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.258	279	0	0	NA	15qA1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr14	57480701	57480701	T	C	ENSMUST00000122063.7	1	ENSMUSG00000040040	missense	M/T	577	Ift88	ENSMUST00000122063.7:c.1730T>C	ENSMUSP00000113768.1:p.Met577Thr	H-2-Kb	9	5	7	QAIEWLTQL	QAIEWLMQL	NetMHC	144.21	130.29	0.903	310	0.216	232.952	219.487	0.942	130.29	144.21	188.3	221.5	250.6744092	244.4049514	289.2344371	260.7654204	M2_p20	0.5	0.5	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.212	310	0	0	NA	14qC3	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	0.988197962	sgMsh2	cell line
chr14	65578034	65578034	T	C	ENSMUST00000022609.6	1	ENSMUSG00000022031	missense	M/V	189	Elp3	ENSMUST00000022609.6:c.565A>G	ENSMUSP00000022609.5:p.Met189Val	H-2-Kb	9	10	2	VVGGTFMAL	VMGGTFMAL	NetMHC	149.24	101.21	0.678	242	0.231	280.842	134.508	0.479	101.21	149.24	279.8	339.4	110.4358301	239.3922023	158.5805793	322.2923521	M2_p20	1.257142857	1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.233	242	0	0	NA	14qD1	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr14	56500485	56500485	T	G	ENSMUST00000095793.2	1	ENSMUSG00000000365	missense	L/R	1241	Rnf17	ENSMUST00000095793.2:c.3722T>G	ENSMUSP00000093469.1:p.Leu1241Arg	H-2-Kb	9	4	8	SNLKCLGRL	SNLKCLGLL	NetMHC	158.2	186.4	1.178	88	0.205	226.77	291.188	1.284	186.4	158.2	258.7	162.3	323.6756285	315.5803838	339.8208329	291.2393144	M2_p20	0.728571429	0.728571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.196	88	0	0	NA	14qC3	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	0.913616983	sgMsh2	cell line
chr15	35300596	35300596	AG	A	ENSMUST00000022952.5	1	ENSMUSG00000022330	FS	Q/X	99	Osr2	ENSMUST00000022952.5:c.301del	ENSMUSP00000022952.4:p.Ala101ProfsTer36	H-2-Kb	9	16	0	TSFQPYTRT	NA	NetMHC	193.49	NA	NA	104	0.452	272.399	NA	NA	NA	193.49	NA	415.4	NA	295.1956816	NA	249.6031145	M2_p20	-1.357142857	-0.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.425	104	0	0	NA	15qB3.1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr14	56761852	56761852	A	C	ENSMUST00000022507.12	1	ENSMUSG00000021938	missense	L/V	316	Pspc1	ENSMUST00000022507.12:c.946T>G	ENSMUSP00000022507.5:p.Leu316Val	H-2-Kb	9	11	1	VMLMRQDLM	LMLMRQDLM	SMM	117.249	337.373	2.877	213	0.258	170.678	505.031	2.959	672.69	215.68	1505.6	463.1	337.3727491	117.2492302	325.2744865	125.6753201	M2_p20	-0.014285714	0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	213	0	0	NA	14qC3	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr15	28367833	28367833	T	C	ENSMUST00000067048.7	5	ENSMUSG00000022262	missense	V/A	2788	Dnah5	ENSMUST00000067048.7:c.8363T>C	ENSMUSP00000069751.6:p.Val2788Ala	H-2-Kb	9	6	6	AKFHYAFNL	AKFHYVFNL	NetMHCpan	95.2	97	1.019	164	0.36	348.957	301.449	0.864	210.93	218.06	97	95.2	445.7691405	479.854973	391.9674468	506.1159219	M2_p20	0.457142857	0.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.347	164	0	0	NA	15qB1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr15	76353432	76353432	A	G	ENSMUST00000161527.7	5	ENSMUSG00000022553	missense	I/V	198	Maf1	ENSMUST00000161527.7:c.592A>G	ENSMUSP00000125387.1:p.Ile198Val	H-2-Kb	9	11	1	VVFFSCRSI	IVFFSCRSI	NetMHCpan	133.6	140.9	1.055	242	0.05	346.397	441.413	1.274	268.71	229.08	140.9	133.6	698.4092778	474.3621186	614.1154167	463.713778	M2_p20	0.928571429	1.6	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.06	242	0	0	NA	15qD3	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	1	0.279678668	sgMsh2	cell line
chr14	123515710	123515710	C	A	ENSMUST00000000201.6	5	ENSMUSG00000000197	missense	R/I	288	Nalcn	ENSMUST00000000201.6:c.863G>T	ENSMUSP00000000201.5:p.Arg288Ile	H-2-Kb	9	5	7	WVFLMYIAI	WVFLMYRAI	SMM	126.506	178.694	1.413	211	0.242	190.437	187.572	0.985	117.77	251.38	308	1796.8	178.6940122	126.5056726	196.4490803	129.4941055	M2_p20	2.571428571	2.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.224	211	0	0	NA	14qE5	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	sgMsh2	cell line
chr15	63824978	63824978	T	C	ENSMUST00000188691.1	1	ENSMUSG00000056293	missense	K/R	448	Gsdmc2	ENSMUST00000188691.1:c.1343A>G	ENSMUSP00000140487.1:p.Lys448Arg	H-2-Kb	9	4	8	STWDLEARM	STWDLEAKM	NetMHC	270.97	630.27	2.326	541	0.362	393.946	686.739	1.743	630.27	270.97	949.5	462.3	743.2073569	407.4834739	574.4470454	380.4083139	M2_p20	-0.7	-0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.357	541	0	0	NA	15qD1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr15	76622252	76622252	GT	G	ENSMUST00000078803.4	1	ENSMUSG00000115987	FS	N/X	216	Vps28	ENSMUST00000078803.4:c.647del	ENSMUSP00000077856.3:p.Asn216ThrfsTer?	H-2-Kb	9	5	7	SAYNAFTAS	SAYNAFNRF	SMM	204.226	61.96	0.303	281	0.039	329.815	52.55	0.159	43.14	281.84	34.5	452.4	61.95979897	204.225515	87.54876014	377.7896015	M2_p20	0.014285714	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.043	281	0	0	NA	15qD3	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	1	0.200436379	sgMsh2	cell line
chr14	69793939	69793939	T	C	ENSMUST00000022665.3	1	ENSMUSG00000022075	missense	N/S	579	Rhobtb2	ENSMUST00000022665.3:c.1736A>G	ENSMUSP00000022665.2:p.Asn579Ser	H-2-Kb	9	10	2	ASRLCLPHL	ANRLCLPHL	NetMHC	312.13	484.34	1.552	99	0.323	395.178	436.724	1.105	484.34	312.13	410.8	430.6	398.2080176	374.2053566	462.6472659	416.1500968	M2_p20	0.657142857	0.714285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.323	99	0	0	NA	14qD2	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr14	68568832	68568832	A	G	ENSMUST00000022641.8	1	ENSMUSG00000022057	missense	F/S	398	Adamdec1	ENSMUST00000022641.8:c.1193T>C	ENSMUSP00000022641.7:p.Phe398Ser	H-2-Kb	9	3	9	VSRSHFQGS	VSRSHFQGF	SMM	109.928	49.216	0.448	127	0.205	397.587	64.517	0.162	52.43	550.69	120.6	1998.2	49.21641774	109.9284236	76.60374466	244.4837509	M2_p20	-1.485714286	-0.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.196	127	0	0	NA	14qD1	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	0.913616983	sgMsh2	cell line
chr16	16673096	16673096	T	C	ENSMUST00000206365.2	3	ENSMUSG00000048101	missense	K/R	295	Olfr19	ENSMUST00000206365.2:c.884A>G	ENSMUSP00000145655.2:p.Lys295Arg	H-2-Db	9	6	6	YSLRNRDLM	YSLRNKDLM	NetMHC	3.3	4.46	1.352	189	0.206	5.853	8.806	1.505	4.46	3.3	5.9	4.6	11.71170164	7.105914866	14.27479894	9.496640546	M2_p20	-0.928571429	-0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	189	0	0	NA	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr16	3592590	3592590	A	G	ENSMUST00000216259.1	5	ENSMUSG00000051003	missense	S/G	65	Olfr161	ENSMUST00000216259.1:c.193A>G	ENSMUSP00000150825.1:p.Ser65Gly	H-2-Db	9	8	4	FFLGNLSFV	FFLSNLSFV	SMM	191.699	80.282	0.419	250	0.16	456.264	114.023	0.25	99.94	647.94	502	1445.2	80.28233585	191.6990674	128.1061561	264.5879126	M2_p20	1.414285714	1.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.162	250	0	0	NA	16qA1	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	sgMsh2	cell line
chr15	80378226	80378226	T	C	ENSMUST00000160424.7	1	ENSMUSG00000022416	missense	V/A	1381	Cacna1i	ENSMUST00000160424.7:c.4142T>C	ENSMUSP00000125063.1:p.Val1381Ala	H-2-Kb	8	5	7	LIVSFFAL	LIVSFFVL	NetMHC	18.97	156.43	8.246	155	0.065	46.124	133.454	2.893	156.43	18.97	140.8	43.3	126.107234	53.5475987	110.0880046	48.94856902	M2_p20	2.728571429	2.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.079	155	0	0	NA	15qE1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	1	0.36824358	sgMsh2	cell line
chr15	80378226	80378226	T	C	ENSMUST00000160424.7	1	ENSMUSG00000022416	missense	V/A	1381	Cacna1i	ENSMUST00000160424.7:c.4142T>C	ENSMUSP00000125063.1:p.Val1381Ala	H-2-Kb	8	7	5	VSFFALNM	VSFFVLNM	NetMHCpan	10.9	12.1	1.11	155	0.065	33.822	28.2	0.834	24.65	27.21	12.1	10.9	31.74972734	40.43337559	41.18508816	52.8128981	M2_p20	1.257142857	1.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.079	155	0	0	NA	15qE1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	1	0.36824358	sgMsh2	cell line
chr16	3592590	3592590	A	G	ENSMUST00000216259.1	5	ENSMUSG00000051003	missense	S/G	65	Olfr161	ENSMUST00000216259.1:c.193A>G	ENSMUSP00000150825.1:p.Ser65Gly	H-2-Kb	8	6	6	MYFFLGNL	MYFFLSNL	NetMHCpan	34	14.7	0.432	250	0.16	89.071	59.088	0.663	49.51	88.66	14.7	34	68.66572344	89.4828896	80.11982647	98.3422182	M2_p20	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.162	250	0	0	NA	16qA1	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	sgMsh2	cell line
chr15	100190056	100190056	T	C	ENSMUST00000100203.9	1	ENSMUSG00000023026	missense	V/A	957	Dip2b	ENSMUST00000100203.9:c.2870T>C	ENSMUSP00000097777.3:p.Val957Ala	H-2-Kb	8	7	5	ASVMAGNL	ASVMVGNL	NetMHC	249.4	155.85	0.625	296	0.054	304.177	234.725	0.772	155.85	249.4	254.3	361	261.0597994	332.4604589	215.149331	275.892567	M2_p20	1	1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.053	296	0	0	NA	15qF1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	1	0.24704949	sgMsh2	cell line
chr16	3592523	3592523	GA	G	ENSMUST00000216259.1	5	ENSMUSG00000051003	FS	G/X	42	Olfr161	ENSMUST00000216259.1:c.128del	ENSMUSP00000150825.1:p.Asn43ThrfsTer46	H-2-Kb	8	47	0	LSLRYWPF	NA	NetMHCpan	130.4	NA	NA	196	0.173	210.41	NA	NA	NA	465.62	NA	130.4	NA	248.7367755	NA	172.0838049	M2_p20	-0.357142857	-0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.161	196	0	0	NA	16qA1	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	sgMsh2	cell line
chr16	32961669	32961669	A	G	ENSMUST00000135193.8	5	ENSMUSG00000022801	missense	Y/C	271	Lrch3	ENSMUST00000135193.8:c.812A>G	ENSMUSP00000130708.1:p.Tyr271Cys	H-2-Kb	8	5	7	KIHIFKCL	KIHIFKYL	SMMPMBEC	256.886	92.628	0.361	226	0.257	319.381	76.184	0.239	59.74	598.73	59.4	324.9	102.9769442	313.8629122	92.62751223	256.8857419	M2_p20	1.571428571	1.571428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.257	226	0	0	NA	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr16	44159507	44159507	A	G	ENSMUST00000161326.7	1	ENSMUSG00000022698	missense	K/R	126	Naa50	ENSMUST00000161326.7:c.377A>G	ENSMUSP00000124291.1:p.Lys126Arg	H-2-Kb	9	4	8	SAIDFYRRF	SAIDFYRKF	NetMHC	21.18	42.48	2.006	172	0.128	43.438	78.244	1.801	42.48	21.18	44	25.2	112.4889855	61.67511955	116.4796347	77.13473645	M2_p20	-0.528571429	-0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.128	172	0	0	NA	16qB4	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	0.596647826	sgMsh2	cell line
chr16	3592590	3592590	A	G	ENSMUST00000216259.1	5	ENSMUSG00000051003	missense	S/G	65	Olfr161	ENSMUST00000216259.1:c.193A>G	ENSMUSP00000150825.1:p.Ser65Gly	H-2-Kb	9	5	7	PMYFFLGNL	PMYFFLSNL	SMM	22.862	15.35	0.671	250	0.16	43.133	26.875	0.623	34.5	54.11	28.5	71.6	15.35005727	22.86177783	25.24933823	32.15511003	M2_p20	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.162	250	0	0	NA	16qA1	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	sgMsh2	cell line
chr15	80378226	80378226	T	C	ENSMUST00000160424.7	1	ENSMUSG00000022416	missense	V/A	1381	Cacna1i	ENSMUST00000160424.7:c.4142T>C	ENSMUSP00000125063.1:p.Val1381Ala	H-2-Kb	9	7	5	VSFFALNMF	VSFFVLNMF	SMM	91.434	129.155	1.413	155	0.065	108.881	137.477	1.263	137.47	95.23	312.5	155.6	129.1546361	91.43448014	137.4833165	122.5321348	M2_p20	1.771428571	1.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.079	155	0	0	NA	15qE1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	1	0.36824358	sgMsh2	cell line
chr15	98126427	98126427	G	T	ENSMUST00000051226.7	1	ENSMUSG00000033065	missense	G/C	439	Pfkm	ENSMUST00000051226.7:c.1315G>T	ENSMUSP00000059801.6:p.Gly439Cys	H-2-Kb	9	7	5	VVHDCFEGL	VVHDGFEGL	NetMHC	110.43	431.59	3.908	160	0.294	228.926	428.227	1.871	431.59	110.43	423.6	235.2	439.6529586	227.0439846	424.864065	230.8075441	M2_p20	-0.214285714	0.5	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.3	160	0	0	NA	15qF1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr16	20686853	20686853	A	G	ENSMUST00000115460.7	5	ENSMUSG00000045983	missense	I/V	1292	Eif4g1	ENSMUST00000115460.7:c.3874A>G	ENSMUSP00000111120.1:p.Ile1292Val	H-2-Kb	9	11	1	VAREHMGRL	IAREHMGRL	SMMPMBEC	106.967	141.661	1.324	115	0.209	116.472	149.63	1.285	127.43	113.79	157.6	170.6	175.4324789	119.1543769	141.6609011	106.9670454	M2_p20	-1.485714286	-0.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.213	115	0	0	NA	16qB1	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	0.992859273	sgMsh2	cell line
chr15	80378226	80378226	T	C	ENSMUST00000160424.7	1	ENSMUSG00000022416	missense	V/A	1381	Cacna1i	ENSMUST00000160424.7:c.4142T>C	ENSMUSP00000125063.1:p.Val1381Ala	H-2-Kb	9	10	2	FALNMFVGV	FVLNMFVGV	NetMHC	192.69	248.8	1.291	155	0.065	372.138	424.432	1.141	248.8	192.69	854.5	400.3	414.1045477	368.2222268	434.7604204	376.053816	M2_p20	1.857142857	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.079	155	0	0	NA	15qE1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	1	0.36824358	sgMsh2	cell line
chr16	17895029	17895029	G	A	ENSMUST00000046937.3	NA	ENSMUSG00000041566	missense	R/H	226	Tssk1	ENSMUST00000046937.3:c.677G>A	ENSMUSP00000040302.2:p.Arg226His	H-2-Kb	9	4	8	SNIKKMLHI	SNIKKMLRI	NetMHCpan	292.2	317	1.085	131	0.29	396.852	365.143	0.92	296.56	329.99	317	292.2	503.6281538	543.3879457	413.2853397	463.713778	M2_p20	0.528571429	0.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.279	131	0	0	NA	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr16	3592523	3592523	GA	G	ENSMUST00000216259.1	5	ENSMUSG00000051003	FS	G/X	42	Olfr161	ENSMUST00000216259.1:c.128del	ENSMUSP00000150825.1:p.Asn43ThrfsTer46	H-2-Kb	9	39	0	WMYASPPPL	NA	NetMHCpan	187.9	NA	NA	196	0.173	209.738	NA	NA	NA	330.1	NA	187.9	NA	192.357888	NA	227.1171867	M2_p20	-0.185714286	-0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.161	196	0	0	NA	16qA1	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	sgMsh2	cell line
chr15	80378226	80378226	T	C	ENSMUST00000160424.7	1	ENSMUSG00000022416	missense	V/A	1381	Cacna1i	ENSMUST00000160424.7:c.4142T>C	ENSMUSP00000125063.1:p.Val1381Ala	H-2-Kb	9	6	6	IVSFFALNM	IVSFFVLNM	NetMHCpan	88.2	93.3	1.058	155	0.065	470.388	429.904	0.914	340.71	343.59	93.3	88.2	554.7662088	597.1865254	519.0987702	670.270337	M2_p20	1.257142857	2.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.079	155	0	0	NA	15qE1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	1	0.36824358	sgMsh2	cell line
chr16	43898221	43898221	C	A	ENSMUST00000132859.7	5	ENSMUSG00000022701	missense	S/Y	4	Ccdc191	ENSMUST00000132859.7:c.11C>A	ENSMUSP00000116078.1:p.Ser4Tyr	H-2-Kb	9	2	3	MTYMKKELV	MTSMKKELV	NetMHC	416.43	10480.62	25.168	344	0.218	433.746	8552.231	19.717	10480.62	416.43	14641.3	616.9	6623.84254	440.6664633	5600.799166	426.8251484	M2_p20	-0.385714286	-0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.23	344	0	0	NA	16qB4	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr16	15663059	15663059	T	G	ENSMUST00000023352.8	1	ENSMUSG00000022672	missense	I/S	348	Prkdc	ENSMUST00000023352.8:c.1043T>G	ENSMUSP00000023352.7:p.Ile348Ser	H-2-Kb	9	4	8	FMEQFYGSI	FMEQFYGII	SMMPMBEC	263.785	331.322	1.256	448	0.237	460.381	972.988	2.113	1523.2	551.69	1750.1	730.3	422.7756832	369.0710667	331.3217908	263.7849417	M2_p20	-0.314285714	-0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.232	448	0	0	NA	16qA2	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr17	34594907	34594907	A	AG	ENSMUST00000038149.12	1	ENSMUSG00000034673	FS	Q/QX	326	Pbx2	ENSMUST00000038149.12:c.983dup	ENSMUSP00000040464.6:p.His329ProfsTer59	H-2-Db	9	17	0	HQLSNAPFL	NA	NetMHC	22	NA	NA	56	0.339	73.203	NA	NA	NA	22	NA	52.3	NA	94.10658202	NA	105.092083	M2_p20	0.9	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.278	56	0	0	NA	17qB1	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr17	22603195	22603195	T	C	ENSMUST00000097381.4	1	ENSMUSG00000094921	missense	F/L	285	Vmn2r112	ENSMUST00000097381.4:c.853T>C	ENSMUSP00000094994.3:p.Phe285Leu	H-2-Db	9	9	3	VSLRMWESL	VSFRMWESL	SMMPMBEC	244.101	427.14	1.75	694	0.209	315.663	501.701	1.589	886.79	425.8	401.7	344.5	576.2620236	286.8269798	427.1397607	244.1012481	M2_p20	-0.028571429	0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.206	694	0	0	NA	17qA3.3	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	0.960230095	sgMsh2	cell line
chr17	6029821	6029821	A	AC	ENSMUST00000115791.9	1	ENSMUSG00000023805	FS	-/X	1108-1109	Synj2	ENSMUST00000115791.9:c.3332dup	ENSMUSP00000111457.2:p.Pro1112SerfsTer43	H-2-Db	9	15	1	SNWLNGEEV	NA	NetMHCpan	321.2	NA	NA	85	0.153	474.024	NA	NA	NA	571.41	NA	321.2	NA	526.7687464	NA	421.2791835	M2_p20	-0.542857143	-0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1529	85	0	0	NA	17qA1	chr17-3079405-14959781	4	2	2	0.9	4.195180026	NA	1	0.712714473	sgMsh2	cell line
chr16	59543197	59543197	AT	A	ENSMUST00000172910.2	5	ENSMUSG00000022723	FS	K/X	2441	Crybg3	ENSMUST00000172910.2:c.7323del	ENSMUSP00000156047.1:p.Lys2441AsnfsTer11	H-2-Db	9	7	5	AAEMNHCIL	NA	NetMHCpan	226	NA	NA	55	0.309	388.867	NA	NA	NA	644.6	NA	226	NA	423.2724481	NA	354.4622582	M2_p20	0.357142857	0.357142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.275	55	0	0	NA	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr17	6029821	6029821	A	AC	ENSMUST00000115791.9	1	ENSMUSG00000023805	FS	-/X	1108-1109	Synj2	ENSMUST00000115791.9:c.3332dup	ENSMUSP00000111457.2:p.Pro1112SerfsTer43	H-2-Kb	8	23	0	VSLRRVHL	NA	NetMHC	15.89	NA	NA	85	0.153	54.106	NA	NA	NA	15.89	NA	40.8	NA	78.29607656	NA	67.41243274	M2_p20	-0.171428571	-0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1529	85	0	0	NA	17qA1	chr17-3079405-14959781	4	2	2	0.9	4.195180026	NA	1	0.712714473	sgMsh2	cell line
chr17	37382656	37382656	T	C	ENSMUST00000215518.1	5	ENSMUSG00000094884	missense	Y/H	30	Olfr105-ps	ENSMUST00000215518.1:c.88T>C	ENSMUSP00000154753.1:p.Tyr30His	H-2-Kb	8	8	4	LAMHFINV	LAMYFINV	NetMHCpan	38.2	31.6	0.827	571	0.222	115.449	106.2	0.92	39.92	67.69	31.6	38.2	226.3288934	224.7708563	172.480499	163.2074578	M2_p20	1.214285714	1.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.229	571	0	0	NA	17qB1	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr16	96683801	96683801	A	G	ENSMUST00000056102.8	1	ENSMUSG00000050272	missense	W/R	1109	Dscam	ENSMUST00000056102.8:c.3325T>C	ENSMUSP00000056040.7:p.Trp1109Arg	H-2-Kb	8	7	5	ISISRSTL	ISISWSTL	NetMHCpan	93.1	15.1	0.162	120	0.217	126.645	21.995	0.174	12.18	93.43	15.1	93.1	35.87071224	183.9670312	28.88949831	159.8600704	M2_p20	0.1	0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.215	120	0	0	NA	16qC4	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr16	90767027	90767027	CA	C	ENSMUST00000140920.1	5	ENSMUSG00000039929	FS	L/X	1616	Urb1	ENSMUST00000140920.1:c.4847del	ENSMUSP00000114717.1:p.Leu1616ArgfsTer37	H-2-Kb	8	35	0	MTPAFFSI	NA	NetMHCpan	58.1	NA	NA	68	0.279	155.093	NA	NA	NA	108.47	NA	58.1	NA	201.7158386	NA	223.738128	M2_p20	1.257142857	1.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.274	68	0	0	NA	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr17	20735632	20735632	A	T	ENSMUST00000232943.1	NA	ENSMUSG00000067951	missense	N/Y	148	Vmn1r227	ENSMUST00000232943.1:c.442A>T	ENSMUSP00000156554.1:p.Asn148Tyr	H-2-Kb	8	9	3	LVYMLFPV	LVNMLFPV	NetMHCpan	111.4	2927.3	26.277	289	0.235	130.081	2754.007	21.171	5298.29	130.82	2927.3	111.4	2580.714726	181.861178	1827.006111	129.3421274	M2_p20	2	2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.232	289	0	0	NA	17qA3.2	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr16	58926453	58926453	T	C	ENSMUST00000205986.3	2	ENSMUSG00000090951	missense	I/M	39	Olfr181	ENSMUST00000205986.3:c.117A>G	ENSMUSP00000145877.2:p.Ile39Met	H-2-Kb	8	5	7	AIYLVTMV	AIYLVTIV	NetMHC	143.87	786.44	5.466	393	0.257	259.507	804.095	3.099	786.44	143.87	1131.3	680.2	620.4974485	238.6382195	821.7505435	280.3754606	M2_p20	2.371428571	2.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.258	393	0	0	NA	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr17	34594907	34594907	A	AG	ENSMUST00000038149.12	1	ENSMUSG00000034673	FS	Q/QX	326	Pbx2	ENSMUST00000038149.12:c.983dup	ENSMUSP00000040464.6:p.His329ProfsTer59	H-2-Kb	8	28	0	LWRLFQSL	NA	NetMHC	144.55	NA	NA	56	0.339	314.225	NA	NA	NA	144.55	NA	381.3	NA	313.8629122	NA	314.5864409	M2_p20	0.1	0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.278	56	0	0	NA	17qB1	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr17	34632174	34632174	G	A	ENSMUST00000015620.6	5	ENSMUSG00000015476	missense	G/S	279	Prrt1	ENSMUST00000015620.6:c.835G>A	ENSMUSP00000015620.6:p.Gly279Ser	H-2-Kb	8	10	2	VSIAAMVL	VGIAAMVL	SMM	129.64	386.136	2.979	50	0.14	161.996	583.499	3.602	838.7	145.86	649.7	240.9	386.1357391	129.6402918	517.2970479	178.1312026	M2_p20	2.457142857	2.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.176	50	0	0	NA	17qB1	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	0.820390761	sgMsh2	cell line
chr16	65523509	65523509	CA	C	ENSMUST00000184525.1	1	ENSMUSG00000004842	FS	Q/X	28	Pou1f1	ENSMUST00000184525.1:c.85del	ENSMUSP00000139087.1:p.Thr29LeufsTer11	H-2-Kb	8	5	8	SILSLIQL	SILSLIQT	NetMHC	160.85	9792.67	60.881	163	0.331	200.002	7636.079	38.18	9792.67	160.85	11730.9	238.8	5479.48825	192.6371303	3897.086091	207.3671696	M2_p20	2.3	2.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.33	163	0	0	NA	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr16	91682114	91682114	G	A	ENSMUST00000023682.11	1	ENSMUSG00000022960	missense	A/V	438	Donson	ENSMUST00000023682.11:c.1313C>T	ENSMUSP00000023682.4:p.Ala438Val	H-2-Kb	8	6	6	IAFRGVSM	IAFRGASM	NetMHCpan	90.3	42.9	0.475	255	0.09	221.594	65.173	0.294	35.69	190.99	42.9	90.3	121.8260042	352.1599796	87.44601036	252.1970487	M2_p20	0.714285714	1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.109	255	0	0	NA	16qC4	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	0.508082914	sgMsh2	cell line
chr17	30517143	30517143	A	G	ENSMUST00000168787.7	1	ENSMUSG00000062202	missense	I/T	332	Btbd9	ENSMUST00000168787.7:c.995T>C	ENSMUSP00000127300.1:p.Ile332Thr	H-2-Kb	8	9	3	SITNHIRL	SIINHIRL	SMM	191.311	60.359	0.316	225	0.196	256.222	68.701	0.268	29.67	234.64	80	723.9	60.35871704	191.3110256	77.04420888	277.8049629	M2_p20	0.128571429	0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.209	225	0	0	NA	17qA3.3	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	0.974214028	sgMsh2	cell line
chr16	91896360	91896360	C	T	ENSMUST00000114002.8	5	ENSMUSG00000022957	missense	P/S	1363	Itsn1	ENSMUST00000114002.8:c.4087C>T	ENSMUSP00000109635.2:p.Pro1363Ser	H-2-Kb	8	10	2	MSLSSFIL	MPLSSFIL	NetMHCpan	325.6	5468.3	16.795	137	0.204	403.763	5007.729	12.403	9542.47	363.16	5468.3	325.6	2949.442949	444.3651588	4547.15753	632.0333573	M2_p20	1.785714286	1.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.216	137	0	0	NA	16qC4	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr16	58915901	58915901	GA	G	ENSMUST00000171656.2	2	ENSMUSG00000090629	FS	S/X	247	Olfr180	ENSMUST00000171656.2:c.739del	ENSMUSP00000128358.1:p.Ser247LeufsTer31	H-2-Kb	8	31	0	KTYQWLYF	NA	NetMHCpan	200.7	NA	NA	230	0.235	382.912	NA	NA	NA	489.31	NA	200.7	NA	445.3895263	NA	320.4350395	M2_p20	-0.157142857	-0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.243	230	0	0	NA	16qC1.2	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr16	58915901	58915901	GA	G	ENSMUST00000171656.2	2	ENSMUSG00000090629	FS	S/X	247	Olfr180	ENSMUST00000171656.2:c.739del	ENSMUSP00000128358.1:p.Ser247LeufsTer31	H-2-Kb	8	29	0	VIKTYQWL	NA	SMM	154.433	NA	NA	230	0.235	282.366	NA	NA	NA	556.53	NA	386.6	NA	154.4329616	NA	178.1312026	M2_p20	-0.285714286	-0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.243	230	0	0	NA	16qC1.2	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr17	30761096	30761096	GT	G	ENSMUST00000236140.1	NA	ENSMUSG00000033826	FS	F/X	3035	Dnah8	ENSMUST00000236140.1:c.9108del	ENSMUSP00000157469.1:p.Phe3036LeufsTer5	H-2-Kb	8	5	8	TSLDLVFL	TSLDLVFF	SMM	245.89	3997.054	16.255	152	0.112	452.067	3837.777	8.489	5159.69	706.65	3678.5	633.9	3997.053856	245.8895091	3394.220093	270.2340064	M2_p20	2.014285714	2.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.12	152	0	0	NA	17qA3.3	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	0.559357337	sgMsh2	cell line
chr17	22603195	22603195	T	C	ENSMUST00000097381.4	1	ENSMUSG00000094921	missense	F/L	285	Vmn2r112	ENSMUST00000097381.4:c.853T>C	ENSMUSP00000094994.3:p.Phe285Leu	H-2-Kb	9	9	3	VSLRMWESL	VSFRMWESL	NetMHC	31.83	12.92	0.406	694	0.209	99.157	30.192	0.304	12.92	31.83	16.1	75.5	48.20698829	135.2415065	44.28432201	122.8146005	M2_p20	-0.028571429	0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.206	694	0	0	NA	17qA3.3	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	0.960230095	sgMsh2	cell line
chr17	20994614	20994614	T	C	ENSMUST00000237195.1	NA	ENSMUSG00000045575	missense	I/V	25	Vmn1r233	ENSMUST00000237195.1:c.73A>G	ENSMUSP00000158452.1:p.Ile25Val	H-2-Kb	9	3	9	VIILFQTMV	VIILFQTMI	NetMHC	46.04	63.11	1.371	228	0.193	142.11	130.172	0.916	63.11	46.04	89.3	129.3	171.044849	154.920896	194.6480243	188.4733717	M2_p20	1.857142857	2.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.214	228	0	0	NA	17qA3.2	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	0.997520584	sgMsh2	cell line
chr17	34594907	34594907	A	AG	ENSMUST00000038149.12	1	ENSMUSG00000034673	FS	Q/QX	326	Pbx2	ENSMUST00000038149.12:c.983dup	ENSMUSP00000040464.6:p.His329ProfsTer59	H-2-Kb	9	20	0	SNAPFLCRL	NA	NetMHCpan	31.5	NA	NA	56	0.339	99.743	NA	NA	NA	46.69	NA	31.5	NA	152.7953016	NA	235.0985768	M2_p20	1.228571429	1.228571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.278	56	0	0	NA	17qB1	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr17	35835148	35835148	C	T	ENSMUST00000001566.9	1	ENSMUSG00000001525	missense	R/H	390	Tubb5	ENSMUST00000001566.9:c.1169G>A	ENSMUSP00000001566.8:p.Arg390His	H-2-Kb	9	8	4	AMFHRKAFL	AMFRRKAFL	NetMHC	66.03	28.95	0.438	254	0.181	75.372	74.147	0.984	28.95	66.03	64.3	99.1	88.73807432	79.08789199	83.99433576	71.65557742	M2_p20	-0.057142857	-0.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.184	254	0	0	NA	17qB1	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	0.85768125	sgMsh2	cell line
chr17	13225949	13225949	T	C	ENSMUST00000080647.4	1	ENSMUSG00000073458	missense	C/R	138	Smok2a	ENSMUST00000080647.4:c.412T>C	ENSMUSP00000094432.2:p.Cys138Arg	H-2-Kb	9	8	4	INYRHNQGI	INYCHNQGI	NetMHCpan	30	54.9	1.83	963	0.138	105.887	125.761	1.188	188.04	80.78	54.9	30	133.6934098	144.9138851	117.8284053	130.9935766	M2_p20	-1.7	-1.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.133	963	0	0	NA	17qA1	chr17-3079405-14959781	4	2	2	0.9	4.195180026	NA	1	0.619954382	sgMsh2	cell line
chr17	32774731	32774731	T	C	ENSMUST00000159086.9	1	ENSMUSG00000024298	missense	K/R	490	Zfp871	ENSMUST00000159086.9:c.1469A>G	ENSMUSP00000127178.1:p.Lys490Arg	H-2-Kb	9	7	5	SQFQRHKAL	SQFQKHKAL	NetMHC	137.22	270.99	1.975	175	0.297	206.635	341.188	1.651	270.99	137.22	269.6	151.3	460.3731641	307.6876041	411.386466	261.9690589	M2_p20	-0.957142857	-0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.314	175	0	0	NA	17qB1	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr17	19066095	19066095	G	T	ENSMUST00000170424.2	5	ENSMUSG00000096717	missense	R/M	285	Vmn2r98	ENSMUST00000170424.2:c.854G>T	ENSMUSP00000131261.1:p.Arg285Met	H-2-Kb	9	9	3	IMMNIEQRL	IMRNIEQRL	NetMHC	155.38	461.59	2.971	868	0.212	251.602	431.344	1.714	461.59	155.38	1041.5	270.9	377.6678362	254.7475407	401.0975415	248.4562923	M2_p20	-0.685714286	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.218	868	0	0	NA	17qA3.2	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr17	37382656	37382656	T	C	ENSMUST00000215518.1	5	ENSMUSG00000094884	missense	Y/H	30	Olfr105-ps	ENSMUST00000215518.1:c.88T>C	ENSMUSP00000154753.1:p.Tyr30His	H-2-Kb	9	7	5	VLAMHFINV	VLAMYFINV	NetMHCpan	171.6	152.5	0.889	571	0.222	293.012	230.854	0.788	138.03	197.65	152.5	171.6	338.9299909	422.7756832	309.2074862	388.3738676	M2_p20	1.214285714	2.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.229	571	0	0	NA	17qB1	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr17	6029821	6029821	A	AC	ENSMUST00000115791.9	1	ENSMUSG00000023805	FS	-/X	1108-1109	Synj2	ENSMUST00000115791.9:c.3332dup	ENSMUSP00000111457.2:p.Pro1112SerfsTer43	H-2-Kb	9	23	0	VSLRRVHLF	NA	NetMHCpan	211	NA	NA	85	0.153	226.416	NA	NA	NA	220.96	NA	211	NA	235.5645857	NA	231.8729034	M2_p20	0.342857143	0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1529	85	0	0	NA	17qA1	chr17-3079405-14959781	4	2	2	0.9	4.195180026	NA	1	0.712714473	sgMsh2	cell line
chr16	65523509	65523509	CA	C	ENSMUST00000184525.1	1	ENSMUSG00000004842	FS	Q/X	28	Pou1f1	ENSMUST00000184525.1:c.85del	ENSMUSP00000139087.1:p.Thr29LeufsTer11	H-2-Kb	9	5	8	SILSLIQLL	SILSLIQTP	NetMHC	271.84	21780.39	80.122	163	0.331	415.546	13849.706	33.329	21780.39	271.84	22114.7	429.2	2600.818226	401.8925911	5919.022625	615.5310989	M2_p20	2.2	2.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.33	163	0	0	NA	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr17	19053653	19053653	C	A	ENSMUST00000170424.2	5	ENSMUSG00000096717	missense	S/Y	54	Vmn2r98	ENSMUST00000170424.2:c.161C>A	ENSMUSP00000131261.1:p.Ser54Tyr	H-2-Kb	9	7	5	HTFYYLKKM	HTFYSLKKM	NetMHCpan	162.4	2676.5	16.481	258	0.267	315.655	1812.209	5.741	2171.47	303.78	2676.5	162.4	1432.550696	345.2311699	1452.947761	327.5291816	M2_p20	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.269	258	0	0	NA	17qA3.2	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr16	58915901	58915901	GA	G	ENSMUST00000171656.2	2	ENSMUSG00000090629	FS	S/X	247	Olfr180	ENSMUST00000171656.2:c.739del	ENSMUSP00000128358.1:p.Ser247LeufsTer31	H-2-Kb	9	31	0	KTYQWLYFI	NA	NetMHCpan	171.2	NA	NA	230	0.235	384.332	NA	NA	NA	307.23	NA	171.2	NA	461.4344339	NA	521.4948213	M2_p20	0.585714286	0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.243	230	0	0	NA	16qC1.2	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr17	27706002	27706002	A	G	ENSMUST00000232437.1	NA	ENSMUSG00000040276	missense	Q/R	230	Pacsin1	ENSMUST00000232437.1:c.689A>G	ENSMUSP00000155999.1:p.Gln230Arg	H-2-Kb	9	7	5	QVFERCQQF	QVFEQCQQF	SMMPMBEC	220.419	798.454	3.622	122	0.23	330.522	1059.932	3.207	1321.41	437.63	2772	716.8	674.6988967	223.4138023	798.4541822	220.4194935	M2_p20	-0.985714286	-0.785714286	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.24	122	0	0	NA	17qA3.3	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr16	58926453	58926453	T	C	ENSMUST00000205986.3	2	ENSMUSG00000090951	missense	I/M	39	Olfr181	ENSMUST00000205986.3:c.117A>G	ENSMUSP00000145877.2:p.Ile39Met	H-2-Kb	9	3	9	FSAIYLVTM	FSAIYLVTI	SMM	339.711	641.372	1.888	393	0.257	388.31	695.236	1.79	910.5	521.58	749.1	436.8	641.3720055	339.7113053	579.7623384	339.8208329	M2_p20	2.028571429	2.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.258	393	0	0	NA	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr17	56632320	56632320	T	G	ENSMUST00000112979.3	1	ENSMUSG00000040828	missense	F/V	50	Catsperd	ENSMUST00000112979.3:c.148T>G	ENSMUSP00000108603.2:p.Phe50Val	H-2-Db	9	5	7	YAFPNTVVL	YAFPNTFVL	NetMHCpan	9.1	7.6	0.835	227	0.256	33.615	30.922	0.92	12.57	10.27	7.6	9.1	49.27424743	62.03260224	49.83907806	56.96000254	M2_p20	1.314285714	1.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.27	227	0	0	NA	17qD	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr17	87990749	87990749	C	G	ENSMUST00000005503.4	1	ENSMUSG00000005370	missense	P/A	1341	Msh6	ENSMUST00000005503.4:c.4021C>G	ENSMUSP00000005503.3:p.Pro1341Ala	H-2-Db	9	10	2	KATINGEAI	KPTINGEAI	NetMHCpan	29.8	7565.1	253.862	148	0.061	70.601	5475.289	77.553	12894.66	41.53	7565.1	29.8	3385.478032	130.2027029	2815.593799	99.67127183	M2_p20	0.385714286	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.068	148	0	0	NA	17qE4	chr17-87745782-94740433	4	2	2	0.9	4.195180026	NA	1	0.316969157	sgMsh2	cell line
chr18	37680939	37680939	G	T	ENSMUST00000192931.1	1	ENSMUSG00000103037	missense	S/I	161	Pcdhgb1	ENSMUST00000192931.1:c.482G>T	ENSMUSP00000141348.1:p.Ser161Ile	H-2-Db	9	3	9	NSLKMYTVI	NSLKMYTVS	NetMHC	158.89	19903.22	125.264	193	0.56	356.594	9153.28	25.669	19903.22	158.89	14990.9	524.3	2996.539453	391.3992598	3315.660076	321.7881152	M2_p20	1.214285714	1.214285714	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.579	193	0	0	NA	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr18	37021442	37021442	T	C	ENSMUST00000047614.3	1	ENSMUSG00000103310	missense	Y/H	405	Pcdha12	ENSMUST00000047614.3:c.1213T>C	ENSMUSP00000047609.1:p.Tyr405His	H-2-Db	9	5	7	STFKNYHSL	STFKNYYSL	NetMHCpan	36.5	34.8	0.953	208	0.26	221.131	155.833	0.705	81.22	180.1	34.8	36.5	270.7821299	272.659102	230.4464382	262.162156	M2_p20	-0.871428571	-0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.281	208	0	0	NA	18qB2	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr17	84697532	84697532	T	C	ENSMUST00000045714.14	1	ENSMUSG00000024254	missense	F/L	576	Abcg8	ENSMUST00000045714.14:c.1726T>C	ENSMUSP00000035246.8:p.Phe576Leu	H-2-Db	9	10	2	GLMINLDNL	GFMINLDNL	NetMHCpan	367.1	1384.4	3.771	101	0.158	482.343	875.659	1.815	1955.18	698.93	1384.4	367.1	313.0545354	536.5621085	366.91883	428.1244195	M2_p20	0.5	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.179	101	0	0	NA	17qE4	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	0.834374694	sgMsh2	cell line
chr18	37295830	37295830	A	C	ENSMUST00000056522.4	NA	ENSMUSG00000051599	missense	Q/H	285	Pcdhb2	ENSMUST00000056522.4:c.855A>C	ENSMUSP00000057921.3:p.Gln285His	H-2-Kb	8	5	7	IAYAFSHA	IAYAFSQA	NetMHC	5.7	7.88	1.382	146	0.233	19.594	24.972	1.274	7.88	5.7	17.9	14.2	38.52476516	28.88949831	32.04350395	24.98848923	M2_p20	0.414285714	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.228	146	0	0	NA	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr17	84697532	84697532	T	C	ENSMUST00000045714.14	1	ENSMUSG00000024254	missense	F/L	576	Abcg8	ENSMUST00000045714.14:c.1726T>C	ENSMUSP00000035246.8:p.Phe576Leu	H-2-Kb	8	4	8	SFYLTAGL	SFYLTAGF	NetMHC	15.37	172.25	11.207	101	0.158	31.057	352.868	11.362	172.25	15.37	298.6	61	482.7696948	29.69887511	407.1364636	32.41455024	M2_p20	1.4	1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.179	101	0	0	NA	17qE4	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	0.834374694	sgMsh2	cell line
chr17	37701005	37701005	AT	A	ENSMUST00000213732.1	5	ENSMUSG00000059964	FS	F/X	112	Olfr119	ENSMUST00000213732.1:c.339del	ENSMUSP00000150099.1:p.Phe113LeufsTer3	H-2-Kb	8	5	8	QMFFFTFL	QMFFFTFF	NetMHCpan	9.9	98.7	9.97	503	0.245	18.421	250.269	13.586	184.5	17.4	98.7	9.9	316.0385059	19.44195797	349.7357273	27.84453695	M2_p20	2.314285714	2.314285714	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.242	503	0	0	NA	17qB1	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr17	38082114	38082114	A	G	ENSMUST00000216523.1	5	ENSMUSG00000043312	missense	M/T	288	Olfr131	ENSMUST00000216523.1:c.863T>C	ENSMUSP00000150562.1:p.Met288Thr	H-2-Kb	8	8	4	ITPTLNPL	ITPMLNPL	NetMHC	80.3	53.48	0.666	292	0.185	136.287	121.388	0.891	53.48	80.3	100.3	182.4	146.4670721	126.107234	142.4754378	146.4670721	M2_p20	-0.071428571	0.028571429	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.182	292	0	0	NA	17qB1	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	0.848358627	sgMsh2	cell line
chr17	43624386	43624386	T	C	ENSMUST00000045717.6	1	ENSMUSG00000040140	missense	I/V	1924	Tdrd6	ENSMUST00000045717.6:c.5770A>G	ENSMUSP00000035338.6:p.Ile1924Val	H-2-Kb	8	11	1	VSPLSAAV	ISPLSAAV	NetMHC	90.41	98.63	1.091	59	0.254	200.803	203.395	1.013	98.63	90.41	404.2	417.4	177.3127641	166.241711	229.4774419	235.3639803	M2_p20	1.2	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.257	59	0	0	NA	17qB3	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr18	22017446	22017446	T	C	ENSMUST00000234736.1	NA	ENSMUSG00000024306	missense	D/G	710	Ccdc178	ENSMUST00000234736.1:c.2129A>G	ENSMUSP00000157323.1:p.Asp710Gly	H-2-Kb	8	6	6	VHGVYGHL	VHGVYDHL	NetMHC	93.09	638.23	6.856	127	0.244	110.084	462.238	4.199	638.23	93.09	1461.9	402.4	286.246378	121.8260042	272.1071791	98.3422182	M2_p20	-0.071428571	-0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.262	127	0	0	NA	18qA2	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr17	56777470	56777470	T	C	ENSMUST00000002444.14	1	ENSMUSG00000024206	missense	N/S	668	Rfx2	ENSMUST00000002444.14:c.2003A>G	ENSMUSP00000002444.7:p.Asn668Ser	H-2-Kb	8	6	6	VMGEFSDL	VMGEFNDL	NetMHC	113.49	324.64	2.861	104	0.317	192.202	326.647	1.699	324.64	113.49	576.2	261.7	313.8629122	193.9724271	328.6548155	190.4320313	M2_p20	0.042857143	0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.323	104	0	0	NA	17qD	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr18	6788502	6788502	T	C	ENSMUST00000097680.6	1	ENSMUSG00000073639	missense	M/T	134	Rab18	ENSMUST00000097680.6:c.401T>C	ENSMUSP00000095285.6:p.Met134Thr	H-2-Kb	8	10	2	VTVYSVPL	VMVYSVPL	NetMHCpan	69.6	62.7	0.901	75	0.28	174.805	270.172	1.546	147.03	132.97	62.7	69.6	393.3145385	216.6406749	406.2000757	225.8083514	M2_p20	1.114285714	1.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.327	75	0	0	NA	18qA1	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr17	42592968	42592968	TA	T	ENSMUST00000068355.7	1	ENSMUSG00000043972	FS	Y/X	159	Opn5	ENSMUST00000068355.7:c.475del	ENSMUSP00000063542.6:p.Tyr159MetfsTer43	H-2-Kb	8	5	7	LAVIWAML	LAVIWAYA	NetMHCpan	147.2	3567.3	24.234	35	0.343	206.513	4062.47	19.672	6717.72	182.49	3567.3	147.2	4557.639811	321.1737185	2604.593785	230.5366617	M2_p20	2.442857143	2.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.369	35	0	0	NA	17qB3	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr17	40228805	40228805	A	G	ENSMUST00000026499.5	1	ENSMUSG00000025433	missense	V/A	167	Crisp3	ENSMUST00000026499.5:c.500T>C	ENSMUSP00000026499.5:p.Val167Ala	H-2-Kb	8	10	2	YACRYCPV	YVCRYCPV	SMMPMBEC	174.478	161.339	0.925	565	0.211	239.579	312.449	1.304	429.13	286.52	494.4	303	195.7672319	192.6371303	161.3392375	174.4777291	M2_p20	0.514285714	0.514285714	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.216	565	0	0	NA	17qB2	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr17	83477824	83477824	T	C	ENSMUST00000096766.11	1	ENSMUSG00000032624	missense	L/P	875	Eml4	ENSMUST00000096766.11:c.2624T>C	ENSMUSP00000094528.4:p.Leu875Pro	H-2-Kb	8	5	7	SIIQWKPV	SIIQWKLV	SMMPMBEC	267.141	735.766	2.754	161	0.236	337.819	1037.14	3.07	1227.56	355.94	1662.3	657.1	846.7203545	319.6980594	735.7664827	267.1406633	M2_p20	0.471428571	0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.24	161	0	0	NA	17qE4	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr17	38304994	38304994	T	C	ENSMUST00000213505.1	5	ENSMUSG00000054940	missense	T/A	156	Olfr137	ENSMUST00000213505.1:c.466A>G	ENSMUSP00000150173.1:p.Thr156Ala	H-2-Kb	8	7	5	CGFTASAL	CGFTTSAL	SMM	193.972	284.931	1.469	191	0.298	240.585	312.177	1.298	583.32	395.88	277.8	199.5	284.9311953	193.9724271	339.4220093	281.6696149	M2_p20	1.185714286	1.185714286	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.3	191	0	0	NA	17qB1	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr18	37941753	37941753	A	G	ENSMUST00000043498.8	1	ENSMUSG00000024454	missense	S/P	312	Hdac3	ENSMUST00000043498.8:c.934T>C	ENSMUSP00000037981.7:p.Ser312Pro	H-2-Kb	8	6	6	WTYETPLL	WTYETSLL	SMMPMBEC	359.534	238.638	0.664	294	0.272	430.684	272.762	0.633	289.23	493.46	348.5	494.9	256.2949211	367.908651	238.6382195	359.5340277	M2_p20	-0.028571429	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.294	294	0	0	NA	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr18	12058929	12058929	T	C	ENSMUST00000209859.1	1	ENSMUSG00000049411	missense	T/A	200	Tmem241	ENSMUST00000209859.1:c.598A>G	ENSMUSP00000147687.1:p.Thr200Ala	H-2-Kb	8	11	1	AGDLFGAL	TGDLFGAL	SMMPMBEC	183.544	144.125	0.785	77	0.221	347.905	288.277	0.829	419.25	497.32	886.8	1009	157.3040847	198.4906254	144.1252256	183.5439188	M2_p20	1.128571429	1.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.229	77	0	0	NA	18qA1	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr17	37751964	37751964	A	G	ENSMUST00000174675.3	5	ENSMUSG00000060017	missense	I/V	37	Olfr121	ENSMUST00000174675.3:c.109A>G	ENSMUSP00000133865.3:p.Ile37Val	H-2-Kb	8	4	8	CFLLFTLV	CFLLFTLI	SMM	253.945	461.041	1.816	551	0.254	479.578	724.227	1.51	850.4	581.81	2002	2533.9	461.0414792	253.9451951	598.0534499	377.3462166	M2_p20	2.928571429	2.928571429	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.254	551	0	0	NA	17qB1	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr18	37021442	37021442	T	C	ENSMUST00000047614.3	1	ENSMUSG00000103310	missense	Y/H	405	Pcdha12	ENSMUST00000047614.3:c.1213T>C	ENSMUSP00000047609.1:p.Tyr405His	H-2-Kb	8	8	4	KNYHSLVL	KNYYSLVL	NetMHCpan	150	57	0.38	208	0.26	428.416	356.888	0.833	345.02	673.56	57	150	368.7567681	366.2182643	518.4895408	490.6140712	M2_p20	0.428571429	0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.281	208	0	0	NA	18qB2	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr18	37473936	37473936	T	C	ENSMUST00000050034.2	NA	ENSMUSG00000047033	missense	F/L	74	Pcdhb15	ENSMUST00000050034.2:c.220T>C	ENSMUSP00000059598.1:p.Phe74Leu	H-2-Kb	8	10	2	RLLLLSPL	RFLLLSPL	SMMPMBEC	429.279	192.637	0.449	80	0.25	459.126	249.124	0.543	305.61	971.72	348.4	437.7	163.5836898	480.5515695	192.6371303	429.2793522	M2_p20	2.371428571	2.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.249	80	0	0	NA	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr18	37021442	37021442	T	C	ENSMUST00000047614.3	1	ENSMUSG00000103310	missense	Y/H	405	Pcdha12	ENSMUST00000047614.3:c.1213T>C	ENSMUSP00000047609.1:p.Tyr405His	H-2-Kb	8	6	6	TFKNYHSL	TFKNYYSL	SMM	267.756	194.42	0.726	208	0.26	366.723	239.62	0.653	359	1171.72	262.6	447.2	194.4195797	267.7564861	216.6406749	286.246378	M2_p20	-0.871428571	-0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.281	208	0	0	NA	18qB2	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr18	37021442	37021442	T	C	ENSMUST00000047614.3	1	ENSMUSG00000103310	missense	Y/H	405	Pcdha12	ENSMUST00000047614.3:c.1213T>C	ENSMUSP00000047609.1:p.Tyr405His	H-2-Kb	9	5	7	STFKNYHSL	STFKNYYSL	NetMHCpan	15.4	13.9	0.903	208	0.26	61.313	45.651	0.745	16.12	22.6	13.9	15.4	75.18132925	100.0253316	87.34740358	104.5321782	M2_p20	-0.871428571	-0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.281	208	0	0	NA	18qB2	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr17	37701005	37701005	AT	A	ENSMUST00000213732.1	5	ENSMUSG00000059964	FS	F/X	112	Olfr119	ENSMUST00000213732.1:c.339del	ENSMUSP00000150099.1:p.Phe113LeufsTer3	H-2-Kb	9	4	9	TQMFFFTFL	TQMFFFTFF	NetMHCpan	14.3	117.3	8.203	503	0.245	93.963	252.605	2.688	250.38	40.61	117.3	14.3	271.7127388	161.1053638	254.8296748	147.3160278	M2_p20	2.314285714	2.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.242	503	0	0	NA	17qB1	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr17	84697532	84697532	T	C	ENSMUST00000045714.14	1	ENSMUSG00000024254	missense	F/L	576	Abcg8	ENSMUST00000045714.14:c.1726T>C	ENSMUSP00000035246.8:p.Phe576Leu	H-2-Kb	9	3	9	NSFYLTAGL	NSFYLTAGF	NetMHC	85.47	432.59	5.061	101	0.158	225.767	521.843	2.311	432.59	85.47	325	89.2	611.0967866	362.3347605	709.9863514	410.4403034	M2_p20	1.4	1.4	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.179	101	0	0	NA	17qE4	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	0.834374694	sgMsh2	cell line
chr17	37751964	37751964	A	G	ENSMUST00000174675.3	5	ENSMUSG00000060017	missense	I/V	37	Olfr121	ENSMUST00000174675.3:c.109A>G	ENSMUSP00000133865.3:p.Ile37Val	H-2-Kb	9	11	1	VLLMFLVSL	ILLMFLVSL	NetMHC	127.87	166.59	1.303	551	0.254	185.568	235.147	1.267	166.59	127.87	243.7	206.3	294.5167504	200.0368468	226.5948317	171.0999962	M2_p20	2.785714286	3.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.254	551	0	0	NA	17qB1	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr17	56900050	56900050	AC	A	ENSMUST00000025053.9	1	ENSMUSG00000024212	FS	V/X	265	Mllt1	ENSMUST00000025053.9:c.793del	ENSMUSP00000025053.8:p.Val265CysfsTer161	H-2-Kb	9	79	0	VSLGRPSGL	NA	SMM	108.42	NA	NA	48	0.208	126.297	NA	NA	NA	129.78	NA	224.6	NA	108.4201491	NA	122.8146005	M2_p20	-0.014285714	-0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.201	48	0	0	NA	17qD	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	0.936923539	sgMsh2	cell line
chr17	78655808	78655808	T	C	ENSMUST00000145910.8	1	ENSMUSG00000024077	missense	H/R	705	Strn	ENSMUST00000145910.8:c.2114A>G	ENSMUSP00000120830.2:p.His705Arg	H-2-Kb	9	4	8	LIHSMVARL	LIHSMVAHL	NetMHC	147.4	148.2	1.005	295	0.085	321.279	317.253	0.987	148.2	147.4	208.8	248	425.7062242	394.5572246	506.1159219	451.0762902	M2_p20	0.457142857	1.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.095	295	0	0	NA	17qE3	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	0.442824558	sgMsh2	cell line
chr17	37701005	37701005	AT	A	ENSMUST00000213732.1	5	ENSMUSG00000059964	FS	F/X	112	Olfr119	ENSMUST00000213732.1:c.339del	ENSMUSP00000150099.1:p.Phe113LeufsTer3	H-2-Kb	9	5	8	QMFFFTFLV	QMFFFTFFG	SMM	56.378	416.016	7.379	503	0.245	130.663	1702.349	13.029	3181.25	152.62	2823.6	205	416.0159675	56.37804345	581.0988286	108.7051201	M2_p20	2.642857143	2.642857143	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.242	503	0	0	NA	17qB1	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr17	84697532	84697532	T	C	ENSMUST00000045714.14	1	ENSMUSG00000024254	missense	F/L	576	Abcg8	ENSMUST00000045714.14:c.1726T>C	ENSMUSP00000035246.8:p.Phe576Leu	H-2-Kb	9	4	8	SFYLTAGLM	SFYLTAGFM	NetMHC	185.37	344.02	1.856	101	0.158	368.163	542.485	1.473	344.02	185.37	582.5	462.1	502.4698412	274.2268658	867.4610828	521.4948213	M2_p20	1.271428571	1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.179	101	0	0	NA	17qE4	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	0.834374694	sgMsh2	cell line
chr18	37680939	37680939	G	T	ENSMUST00000192931.1	1	ENSMUSG00000103037	missense	S/I	161	Pcdhgb1	ENSMUST00000192931.1:c.482G>T	ENSMUSP00000141348.1:p.Ser161Ile	H-2-Kb	9	10	2	VIPNPHFSL	VSPNPHFSL	NetMHC	211.65	119.37	0.564	193	0.56	410.119	267.215	0.652	119.37	211.65	107.8	235.3	415.0591573	584.9382211	522.696991	774.9077422	M2_p20	-0.585714286	0.228571429	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.579	193	0	0	NA	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr18	37295830	37295830	A	C	ENSMUST00000056522.4	NA	ENSMUSG00000051599	missense	Q/H	285	Pcdhb2	ENSMUST00000056522.4:c.855A>C	ENSMUSP00000057921.3:p.Gln285His	H-2-Kb	9	5	7	IAYAFSHAS	IAYAFSQAS	SMM	135.242	106.196	0.785	146	0.233	204.88	154.26	0.753	109.82	231.36	198.7	178.4	106.1964502	135.2415065	221.9473684	283.3022345	M2_p20	0.042857143	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.228	146	0	0	NA	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr18	37515513	37515513	A	T	ENSMUST00000061405.5	NA	ENSMUSG00000044022	missense	Q/L	565	Pcdhb21	ENSMUST00000061405.5:c.1694A>T	ENSMUSP00000056424.4:p.Gln565Leu	H-2-Kb	9	3	9	APFVLYPML	APFVLYPMQ	NetMHC	253.23	10293.39	40.648	344	0.148	353.634	6030.222	17.052	10293.39	253.23	15184.1	378.7	1730.25455	331.2150024	1767.054726	376.053816	M2_p20	1.942857143	1.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.147	344	0	0	NA	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	0.685212737	sgMsh2	cell line
chr17	56632320	56632320	T	G	ENSMUST00000112979.3	1	ENSMUSG00000040828	missense	F/V	50	Catsperd	ENSMUST00000112979.3:c.148T>G	ENSMUSP00000108603.2:p.Phe50Val	H-2-Kb	9	3	9	LFYAFPNTV	LFYAFPNTF	NetMHCpan	233	338.6	1.453	227	0.256	281.738	333.442	1.184	338.69	258.61	338.6	233	228.6177783	304.8667072	328.2842143	424.864065	M2_p20	0.242857143	0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.27	227	0	0	NA	17qD	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr18	25340381	25340381	A	G	ENSMUST00000097643.9	5	ENSMUSG00000033632	missense	N/S	414	AW554918	ENSMUST00000097643.9:c.1241A>G	ENSMUSP00000095248.3:p.Asn414Ser	H-2-Kb	9	10	2	YSWLRTQAM	YNWLRTQAM	NetMHCpan	246.9	389.9	1.579	65	0.308	285.227	354.619	1.243	397.05	289.33	389.9	246.9	301.3769268	283.2109234	319.3375581	287.2433612	M2_p20	-0.3	-0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.302	65	0	0	NA	18qA2	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr18	35739535	35739535	C	A	ENSMUST00000115728.4	1	ENSMUSG00000024349	missense	G/C	15	Tmem173	ENSMUST00000115728.4:c.43G>T	ENSMUSP00000111393.3:p.Gly15Cys	H-2-Kb	9	11	1	CHRSKYVAL	GHRSKYVAL	SMM	254.162	445.769	1.754	100	0.27	347.718	763.45	2.196	1039.09	298.93	2837.6	937.9	445.7691405	254.1616376	487.8092149	396.5062159	M2_p20	-0.1	-0.1	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.275	100	0	0	NA	18qB2	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr17	38130482	38130482	C	CT	ENSMUST00000216804.1	5	ENSMUSG00000067186	FS	-/X	236-237	Olfr132	ENSMUST00000216804.1:c.708dup	ENSMUSP00000149593.1:p.Ala237SerfsTer33	H-2-Kb	9	13	0	IWHLYFSPS	NA	SMM	41.031	NA	NA	222	0.234	234.295	NA	NA	NA	378.38	NA	778.2	NA	41.03080144	NA	90.20902731	M2_p20	-0.157142857	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.218	222	0	0	NA	17qB1	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr17	37659791	37659791	G	A	ENSMUST00000215414.1	5	ENSMUSG00000095286	missense	P/S	181	Olfr117	ENSMUST00000215414.1:c.541C>T	ENSMUSP00000150204.1:p.Pro181Ser	H-2-Kb	9	11	1	SAMIKLACV	PAMIKLACV	SMMPMBEC	385.7	984.578	2.553	350	0.28	433.297	3874.038	8.941	6633.5	406.22	9900.2	650.7	1114.576803	460.3731641	984.5777112	385.7003207	M2_p20	2.114285714	2.114285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.281	350	0	0	NA	17qB1	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr18	37941753	37941753	A	G	ENSMUST00000043498.8	1	ENSMUSG00000024454	missense	S/P	312	Hdac3	ENSMUST00000043498.8:c.934T>C	ENSMUSP00000037981.7:p.Ser312Pro	H-2-Kb	9	4	8	RCWTYETPL	RCWTYETSL	SMMPMBEC	408.555	698.634	1.71	294	0.272	457.95	789.442	1.724	880.25	477.4	638	438.5	1244.829868	714.6773197	698.6344547	408.5545015	M2_p20	-0.7	-0.7	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.294	294	0	0	NA	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr18	24017798	24017798	CA	C	ENSMUST00000066497.11	1	ENSMUSG00000051469	FS	L/X	97	Zfp24	ENSMUST00000066497.11:c.290del	ENSMUSP00000064637.5:p.Leu97TrpfsTer31	H-2-Kb	9	16	0	PSYPRSYRL	NA	SMM	79.82	NA	NA	41	0.244	228.119	NA	NA	NA	511.59	NA	329.4	NA	79.81968324	NA	126.8381795	M2_p20	-1.457142857	-1.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.24	41	0	0	NA	18qA2	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Db	9	5	9	SNVVNHFFV	SNVVNHFFC	NetMHC	33.28	4264.52	128.141	357	0.216	169.809	3110.826	18.32	4264.52	33.28	4326.5	48.8	1957.131469	290.8171406	1310.901318	321.7881152	M2_p20	1.642857143	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.206	357	0	0	NA	19qA	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.960230095	sgMsh2	cell line
chr19	7879416	7879416	A	T	ENSMUST00000075619.4	1	ENSMUSG00000067656	missense	I/N	419	Slc22a27	ENSMUST00000075619.4:c.1256T>A	ENSMUSP00000093991.1:p.Ile419Asn	H-2-Db	9	7	5	RGIFNLIAV	RGIFILIAV	NetMHC	61.93	19355.93	312.545	302	0.149	159.223	11684.122	73.382	19355.93	61.93	10726.9	78.8	11657.89126	246.388254	11710.35336	239.6458982	M2_p20	2.585714286	2.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.146	302	0	0	NA	19qA	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.680551426	sgMsh2	cell line
chr19	13502426	13502426	A	G	ENSMUST00000217001.1	2	ENSMUSG00000071629	missense	I/V	28	Olfr1477	ENSMUST00000217001.1:c.82A>G	ENSMUSP00000149565.1:p.Ile28Val	H-2-Kb	8	11	1	VIFTLIYL	IIFTLIYL	SMM	15.267	16.283	1.067	813	0.239	17.014	18.256	1.073	19.54	16.62	27.2	23.8	16.2832091	15.26651821	16.97227266	17.40764414	M2_p20	2.485714286	2.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.236	813	0	0	NA	19qA	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr19	10207246	10207246	T	G	ENSMUST00000040372.13	1	ENSMUSG00000036372	missense	F/V	66	Tmem258	ENSMUST00000040372.13:c.196T>G	ENSMUSP00000044751.7:p.Phe66Val	H-2-Kb	8	11	1	VGVLFLLL	FGVLFLLL	NetMHC	19.2	194.49	10.13	229	0.197	37.169	178.287	4.797	194.49	19.2	271.5	29.8	162.0839455	44.53895263	157.666708	44.53895263	M2_p20	3.114285714	3.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.188	229	0	0	NA	19qA	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.876326494	sgMsh2	cell line
chr19	10207246	10207246	T	G	ENSMUST00000040372.13	1	ENSMUSG00000036372	missense	F/V	66	Tmem258	ENSMUST00000040372.13:c.196T>G	ENSMUSP00000044751.7:p.Phe66Val	H-2-Kb	8	4	8	VASLFMGV	VASLFMGF	NetMHC	37.83	202.78	5.36	229	0.197	128.266	476.977	3.719	202.78	37.83	174.7	78.4	810.4757034	178.1312026	751.173053	216.6406749	M2_p20	1.9	1.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.188	229	0	0	NA	19qA	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.876326494	sgMsh2	cell line
chr18	61697778	61697778	T	C	ENSMUST00000025472.6	1	ENSMUSG00000024579	missense	Y/C	341	Pcyox1l	ENSMUST00000025472.6:c.1022A>G	ENSMUSP00000025472.1:p.Tyr341Cys	H-2-Kb	8	5	7	VSLVHGCL	VSLVHGYL	NetMHC	42.26	7.17	0.17	124	0.323	48.333	15.42	0.319	7.17	42.26	15	81.6	15.83944645	48.27696948	17.44777291	48.38825938	M2_p20	1.414285714	1.471428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.342	124	0	0	NA	18qE1	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	8	13	1	VTFPHYWL	NA	NetMHCpan	13.9	NA	NA	357	0.216	31.617	NA	NA	NA	50.29	NA	13.9	NA	24.5323979	NA	38.70258739	M2_p20	-0.157142857	-0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.206	357	0	0	NA	19qA	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.960230095	sgMsh2	cell line
chr18	56491908	56491908	A	C	ENSMUST00000237355.1	NA	ENSMUSG00000001700	missense	I/L	358	Gramd3	ENSMUST00000237355.1:c.1072A>C	ENSMUSP00000157710.1:p.Ile358Leu	H-2-Kb	8	4	8	AIIVCALL	AIIVCALI	NetMHC	138.87	1449.26	10.436	104	0.135	182.51	1386.404	7.596	1449.26	138.87	2402.7	511.3	1323.548926	204.0515979	924.1447486	160.9681675	M2_p20	3.585714286	3.585714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.14	104	0	0	NA	18qD3	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	0.65258356	sgMsh2	cell line
chr19	13781062	13781062	C	A	ENSMUST00000219412.1	NA	ENSMUSG00000048356	missense	P/Q	150	Olfr1496	ENSMUST00000219412.1:c.449C>A	ENSMUSP00000151386.1:p.Pro150Gln	H-2-Kb	8	7	5	LSFCQWAL	LSFCPWAL	SMM	147.143	234.823	1.596	321	0.153	171.27	242.281	1.415	249.74	185.44	169.7	157.1	234.8226582	147.1431334	284.9311953	214.1608096	M2_p20	0.814285714	0.814285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.151	321	0	0	NA	19qA	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.703857982	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	8	8	6	VNHFFVTF	VNHFFCDI	NetMHCpan	52.1	72.4	1.39	357	0.216	262.687	291.68	1.11	265.13	217.24	72.4	52.1	318.2291802	353.7854762	330.1718172	308.1342684	M2_p20	0.742857143	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.206	357	0	0	NA	19qA	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.960230095	sgMsh2	cell line
chr19	5982837	5982837	A	C	ENSMUST00000041827.7	1	ENSMUSG00000037451	missense	S/A	267	Slc22a20	ENSMUST00000041827.7:c.799T>G	ENSMUSP00000049473.7:p.Ser267Ala	H-2-Kb	8	6	6	VFFLYAWW	VFFLYSWW	SMM	21.22	47.945	2.259	49	0.327	168.912	331.805	1.964	564.13	295.97	4006.7	4116.2	47.94463315	21.21973715	99.48096742	41.85429201	M2_p20	1.157142857	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.333	49	0	0	NA	19qA	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	sgMsh2	cell line
chr19	13235020	13235020	A	G	ENSMUST00000207246.3	2	ENSMUSG00000096365	missense	I/V	257	Olfr1463	ENSMUST00000207246.3:c.769A>G	ENSMUSP00000146566.1:p.Ile257Val	H-2-Kb	8	8	4	GTTVFMYL	GTTIFMYL	SMMPMBEC	200.789	238.638	1.189	406	0.202	307.737	384.687	1.25	519.65	368.45	501	458	268.3737286	247.0244836	238.6382195	200.7890385	M2_p20	1.428571429	1.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.204	406	0	0	NA	19qA	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.950907472	sgMsh2	cell line
chr19	10054643	10054643	A	G	ENSMUST00000115995.3	1	ENSMUSG00000024664	missense	H/R	266	Fads3	ENSMUST00000115995.3:c.797A>G	ENSMUSP00000111659.2:p.His266Arg	H-2-Kb	8	11	1	RQHLYFFL	HQHLYFFL	SMMPMBEC	135.75	290.228	2.138	326	0.147	153.427	437.353	2.851	1305.83	369.59	505.1	167.3	369.6068402	139.5532644	290.2284617	135.7500506	M2_p20	0.742857143	0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.141	326	0	0	NA	19qA	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.657244871	sgMsh2	cell line
chr19	5673337	5673337	G	T	ENSMUST00000113615.8	1	ENSMUSG00000054874	missense	L/I	1277	Pcnx3	ENSMUST00000113615.8:c.3829C>A	ENSMUSP00000109245.2:p.Leu1277Ile	H-2-Kb	8	8	4	MLFIQALL	MLFLQALL	SMM	129.342	107.088	0.828	77	0.143	153.992	129.026	0.838	277.12	378.91	129.6	145.9	107.0878008	129.3421274	128.4517425	162.0839455	M2_p20	2.428571429	2.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.163	77	0	0	NA	19qA	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	8	17	0	HYWLFLAL	NA	SMMPMBEC	198.948	NA	NA	357	0.216	324.952	NA	NA	NA	632.06	NA	372.1	NA	277.8049629	NA	198.9481935	M2_p20	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.206	357	0	0	NA	19qA	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.960230095	sgMsh2	cell line
chr19	16383254	16383254	G	A	ENSMUST00000025541.5	1	ENSMUSG00000024639	missense	V/M	314	Gnaq	ENSMUST00000025541.5:c.940G>A	ENSMUSP00000025541.5:p.Val314Met	H-2-Kb	8	6	6	ILKMFMDL	ILKMFVDL	NetMHCpan	249.7	319.7	1.28	222	0.221	388.374	474.546	1.222	1460.9	633.96	319.7	249.7	595.3056439	459.9811133	353.7854762	316.7670499	M2_p20	0.971428571	1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.22	222	0	0	NA	19qA	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr19	5880446	5880446	G	T	ENSMUST00000025732.13	1	ENSMUSG00000024818	missense	G/C	54	Slc25a45	ENSMUST00000025732.13:c.160G>T	ENSMUSP00000025732.7:p.Gly54Cys	H-2-Kb	8	9	3	VLCFFKGM	VLGFFKGM	NetMHCpan	190.4	236.1	1.24	93	0.161	445.082	1030.027	2.314	1135.91	779.46	236.1	190.4	1290.446488	506.6872779	924.1447486	383.4775994	M2_p20	1.357142857	1.685714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	93	0	0	NA	19qA	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	sgMsh2	cell line
chr19	13146291	13146291	C	T	ENSMUST00000213493.1	5	ENSMUSG00000057503	missense	A/T	123	Olfr1459	ENSMUST00000213493.1:c.367G>A	ENSMUSP00000150886.1:p.Ala123Thr	H-2-Kb	9	4	8	MAYDRYATV	MAYDRYAAV	NetMHC	7.57	6.49	0.857	1205	0.192	17.709	17.146	0.968	6.49	7.57	10.4	9.7	24.66664026	26.18846237	23.89186213	25.71875847	M2_p20	-0.757142857	-0.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.195	1205	0	0	NA	19qA	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.908955672	sgMsh2	cell line
chr19	5673337	5673337	G	T	ENSMUST00000113615.8	1	ENSMUSG00000054874	missense	L/I	1277	Pcnx3	ENSMUST00000113615.8:c.3829C>A	ENSMUSP00000109245.2:p.Leu1277Ile	H-2-Kb	9	6	6	SAMLFIQAL	SAMLFLQAL	NetMHC	14.32	10.91	0.762	77	0.143	66.24	43.585	0.658	10.91	14.32	13.7	15.5	73.46999326	116.9795644	106.4755765	155.3280893	M2_p20	2.157142857	2.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.163	77	0	0	NA	19qA	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	sgMsh2	cell line
chr19	5880446	5880446	G	T	ENSMUST00000025732.13	1	ENSMUSG00000024818	missense	G/C	54	Slc25a45	ENSMUST00000025732.13:c.160G>T	ENSMUSP00000025732.7:p.Gly54Cys	H-2-Kb	9	8	4	SVLCFFKGM	SVLGFFKGM	NetMHCpan	18.9	23.6	1.249	93	0.161	60.733	61.813	1.018	21.78	22.13	23.6	18.9	100.0253316	99.3367621	141.3350901	135.2851103	M2_p20	1.357142857	1.685714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	93	0	0	NA	19qA	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	sgMsh2	cell line
chr19	3948632	3948632	A	G	ENSMUST00000162708.6	1	ENSMUSG00000036908	missense	K/R	517	Unc93b1	ENSMUST00000162708.6:c.1550A>G	ENSMUSP00000124272.1:p.Lys517Arg	H-2-Kb	9	4	8	SSLPMKARL	SSLPMKAKL	NetMHC	44.92	155.55	3.463	77	0.13	188.011	364.422	1.938	155.55	44.92	303	126.5	455.1033161	249.5226649	425.8434778	282.000579	M2_p20	0.185714286	0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.142	77	0	0	NA	19qA	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	sgMsh2	cell line
chr18	63114983	63114983	C	A	ENSMUST00000047480.12	1	ENSMUSG00000041482	missense	R/M	482	Piezo2	ENSMUST00000047480.12:c.1445G>T	ENSMUSP00000040019.5:p.Arg482Met	H-2-Kb	9	11	1	MSVRMHAMV	RSVRMHAMV	NetMHC	51.79	106.73	2.061	106	0.264	424.001	799.353	1.885	106.73	51.79	457.8	235.3	1315.558	692.0062231	1140.906357	612.7029904	M2_p20	0.9	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.301	106	0	0	NA	18qE1	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	9	13	1	VTFPHYWLF	NA	NetMHCpan	32	NA	NA	357	0.216	35.13	NA	NA	NA	109.74	NA	32	NA	35.08407252	NA	35.17628732	M2_p20	0.342857143	0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.206	357	0	0	NA	19qA	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.960230095	sgMsh2	cell line
chr19	13781532	13781532	A	G	ENSMUST00000219412.1	NA	ENSMUSG00000048356	missense	I/V	307	Olfr1496	ENSMUST00000219412.1:c.919A>G	ENSMUSP00000151386.1:p.Ile307Val	H-2-Kb	9	11	1	VNKSHLLPL	INKSHLLPL	SMM	86.718	127.676	1.472	217	0.235	97.38	127.844	1.313	170.42	141.35	95.7	98.1	127.6762152	86.71814915	128.0117987	96.66071427	M2_p20	0.271428571	0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.238	217	0	0	NA	19qA	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	9	7	7	VVNHFFVTF	VVNHFFCDI	SMM	104.018	301.377	2.897	357	0.216	110.553	279.147	2.525	290.84	180.67	126.9	112.4	301.3769268	104.0183595	267.4545558	108.7051201	M2_p20	0.742857143	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.206	357	0	0	NA	19qA	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.960230095	sgMsh2	cell line
chr19	13705333	13705333	A	G	ENSMUST00000216366.1	5	ENSMUSG00000051156	missense	T/A	169	Olfr1491	ENSMUST00000216366.1:c.505A>G	ENSMUSP00000149071.1:p.Thr169Ala	H-2-Kb	9	6	6	TALIFALPF	TALIFTLPF	NetMHC	239.87	221.04	0.921	544	0.189	260.671	213.815	0.82	221.04	239.87	225.8	251.5	206.5903351	269.8422814	205.7074402	286.5827198	M2_p20	2.557142857	2.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.194	544	0	0	NA	19qA	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.904294361	sgMsh2	cell line
chr19	16383254	16383254	G	A	ENSMUST00000025541.5	1	ENSMUSG00000024639	missense	V/M	314	Gnaq	ENSMUST00000025541.5:c.940G>A	ENSMUSP00000025541.5:p.Val314Met	H-2-Kb	9	5	7	FILKMFMDL	FILKMFVDL	NetMHC	268.8	623.27	2.319	222	0.221	358.268	502.216	1.402	623.27	268.8	645.4	411.6	381.1623536	362.3347605	317.8703353	354.201177	M2_p20	0.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.22	222	0	0	NA	19qA	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr18	44847844	44847844	A	G	ENSMUST00000037763.10	1	ENSMUSG00000034653	missense	Q/R	502	Ythdc2	ENSMUST00000037763.10:c.1505A>G	ENSMUSP00000048340.7:p.Gln502Arg	H-2-Kb	9	9	3	FARVFHLIL	FAQVFHLIL	SMM	224.962	422.776	1.879	153	0.222	340.8	495.95	1.455	462.4	364.46	529.5	447.6	422.7756832	224.9624328	563.9622051	317.1392538	M2_p20	1.628571429	1.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.234	153	0	0	NA	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr19	11302068	11302068	G	A	ENSMUST00000187467.1	5	ENSMUSG00000099398	missense	S/F	1042	Ms4a14	ENSMUST00000187467.1:c.3125C>T	ENSMUSP00000140996.1:p.Ser1042Phe	H-2-Kb	9	7	5	WSTPFWQPI	WSTPSWQPI	NetMHC	408.4	3794.49	9.291	256	0.121	481.829	3435.683	7.131	3794.49	408.4	4696.3	413.8	3076.876041	602.7122243	2595.673122	549.8573061	M2_p20	-0.142857143	-0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.129	256	0	0	NA	19qA	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.601309137	sgMsh2	cell line
chr19	5673337	5673337	G	T	ENSMUST00000113615.8	1	ENSMUSG00000054874	missense	L/I	1277	Pcnx3	ENSMUST00000113615.8:c.3829C>A	ENSMUSP00000109245.2:p.Leu1277Ile	H-2-Kb	9	7	5	AMLFIQALL	AMLFLQALL	SMM	376.799	222.9	0.592	77	0.143	399.788	233.411	0.584	207.33	423.24	257.8	399.4	222.8999649	376.7992242	243.9214539	400.1750427	M2_p20	2.428571429	2.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.163	77	0	0	NA	19qA	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	sgMsh2	cell line
chr19	13235020	13235020	A	G	ENSMUST00000207246.3	2	ENSMUSG00000096365	missense	I/V	257	Olfr1463	ENSMUST00000207246.3:c.769A>G	ENSMUSP00000146566.1:p.Ile257Val	H-2-Kb	9	10	2	TVFMYLQPS	TIFMYLQPS	SMM	139.672	144.248	1.033	406	0.202	248.273	280.109	1.128	488.92	435.18	370	309.8	144.2480663	139.6722084	190.2172944	186.7454375	M2_p20	0.185714286	1.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.204	406	0	0	NA	19qA	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.950907472	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	9	17	0	HYWLFLALV	NA	SMM	304.166	NA	NA	357	0.216	437.286	NA	NA	NA	459.38	NA	1465.1	NA	304.1655332	NA	415.1929781	M2_p20	2.757142857	2.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.206	357	0	0	NA	19qA	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.960230095	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	9	14	0	TFPHYWLFL	NA	NetMHCpan	353	NA	NA	357	0.216	400.076	NA	NA	NA	462.8	NA	353	NA	426.6875784	NA	373.4650797	M2_p20	0.485714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.206	357	0	0	NA	19qA	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.960230095	sgMsh2	cell line
chr18	44847844	44847844	A	G	ENSMUST00000037763.10	1	ENSMUSG00000034653	missense	Q/R	502	Ythdc2	ENSMUST00000037763.10:c.1505A>G	ENSMUSP00000048340.7:p.Gln502Arg	H-2-Kb	9	7	5	DAFARVFHL	DAFAQVFHL	NetMHCpan	355	1026.1	2.89	153	0.222	436.068	1456.594	3.34	1952.22	609.77	1026.1	355	1233.417199	408.4228203	1679.770694	463.713778	M2_p20	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.234	153	0	0	NA	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr19	5982837	5982837	A	C	ENSMUST00000041827.7	1	ENSMUSG00000037451	missense	S/A	267	Slc22a20	ENSMUST00000041827.7:c.799T>G	ENSMUSP00000049473.7:p.Ser267Ala	H-2-Kb	9	6	6	VFFLYAWWL	VFFLYSWWL	SMM	111.715	68.251	0.611	49	0.327	477.142	326.92	0.685	561.53	819.31	1138.8	1653.8	68.25115418	111.7146168	92.31026548	134.9739632	M2_p20	1.3	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.333	49	0	0	NA	19qA	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	9	16	0	PHYWLFLAL	NA	SMM	166.001	NA	NA	357	0.216	366.318	NA	NA	NA	971.99	NA	541.1	NA	166.0007308	NA	191.5358177	M2_p20	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.206	357	0	0	NA	19qA	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.960230095	sgMsh2	cell line
chr19	6171394	6171394	T	C	ENSMUST00000045042.7	1	ENSMUSG00000039699	missense	L/P	78	Batf2	ENSMUST00000045042.7:c.233T>C	ENSMUSP00000045744.7:p.Leu78Pro	H-2-Kb	9	5	7	AGWGRTPHL	AGWGRTLHL	NetMHCpan	309.4	307.7	0.995	89	0.112	429.93	509.685	1.186	870.88	1085.26	307.7	309.4	579.5754752	482.0698829	439.7947088	377.7896015	M2_p20	-1.071428571	-0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.117	89	0	0	NA	19qA	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.545373403	sgMsh2	cell line
chr2	24953277	24953277	T	C	ENSMUST00000028350.8	1	ENSMUSG00000026974	missense	V/A	87	Zmynd19	ENSMUST00000028350.8:c.260T>C	ENSMUSP00000028350.3:p.Val87Ala	H-2-Db	9	10	2	VAHLNAVTV	VVHLNAVTV	NetMHC	8.32	172.04	20.678	97	0.588	28.28	261.657	9.252	172.04	8.32	293.9	20.7	229.4140437	35.86080216	327.0167515	51.23538453	M2_p20	0.942857143	1.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.558	97	0	0	NA	2qA3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr2	31207697	31207697	A	G	ENSMUST00000056433.6	1	ENSMUSG00000000194	missense	K/R	441	Gpr107	ENSMUST00000056433.6:c.1322A>G	ENSMUSP00000056739.5:p.Lys441Arg	H-2-Db	9	4	8	KAAINLARL	KAAINLAKL	NetMHCpan	101.4	102.4	1.01	290	0.107	325.555	235.751	0.724	167.68	392.01	102.4	101.4	303.8225469	298.2771604	364.3929785	352.8336521	M2_p20	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.107	290	0	0	NA	2qB	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.498760292	sgMsh2	cell line
chr2	22577871	22577871	T	C	ENSMUST00000044749.13	5	ENSMUSG00000025716	missense	V/A	1317	Myo3a	ENSMUST00000044749.13:c.3950T>C	ENSMUSP00000046329.7:p.Val1317Ala	H-2-Db	9	10	2	SAVTQNAPL	SVVTQNAPL	SMMPMBEC	357.742	2283.337	6.383	128	0.391	496.921	3714.743	7.476	9108.98	745.43	4105.8	474.3	3323.686094	519.5412082	2283.336925	357.7420571	M2_p20	0.071428571	0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.409	128	0	0	NA	2qA3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr19	31083214	31083214	A	T	ENSMUST00000066039.7	NA	ENSMUSG00000053536	missense	D/V	50	Cstf2t	ENSMUST00000066039.7:c.149A>T	ENSMUSP00000093831.3:p.Asp50Val	H-2-Kb	8	4	8	VSFRLVYV	VSFRLVYD	NetMHC	12.06	3204.4	265.705	283	0.131	19.532	1434.729	73.455	3204.4	12.06	2724	17.3	145.4587999	21.76406428	126.3979412	22.21979255	M2_p20	1.2	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.14	283	0	0	NA	19qC1	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.65258356	sgMsh2	cell line
chr19	44973627	44973627	T	C	ENSMUST00000096053.4	1	ENSMUSG00000036097	missense	I/T	1081	Slf2	ENSMUST00000096053.4:c.3242T>C	ENSMUSP00000093758.3:p.Ile1081Thr	H-2-Kb	8	8	4	LTYTLLHL	LTYILLHL	NetMHCpan	21.4	34.2	1.598	640	0.214	46.318	52.591	1.135	36.2	30.3	34.2	21.4	74.08665723	69.6209588	68.98267002	62.33615346	M2_p20	0.785714286	0.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.215	640	0	0	NA	19qC3	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr2	31207697	31207697	A	G	ENSMUST00000056433.6	1	ENSMUSG00000000194	missense	K/R	441	Gpr107	ENSMUST00000056433.6:c.1322A>G	ENSMUSP00000056739.5:p.Lys441Arg	H-2-Kb	8	5	7	AAINLARL	AAINLAKL	NetMHC	45.63	189.95	4.163	290	0.107	104.51	266.237	2.547	189.95	45.63	211.3	91.6	351.3500341	122.9532464	321.1737185	117.4194387	M2_p20	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.107	290	0	0	NA	2qB	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.498760292	sgMsh2	cell line
chr19	60467939	60467939	A	C	ENSMUST00000051277.3	NA	ENSMUSG00000045052	missense	I/S	63	Prlhr	ENSMUST00000051277.3:c.188T>G	ENSMUSP00000063114.2:p.Ile63Ser	H-2-Kb	8	11	1	SVMLYSIV	IVMLYSIV	NetMHCpan	60	37.1	0.618	197	0.076	213.733	107.338	0.502	55.55	93.47	37.1	60	188.2521739	354.6010359	159.1255801	333.9950266	M2_p20	2.357142857	2.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.091	197	0	0	NA	19qD3	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.424179314	sgMsh2	cell line
chr2	31207697	31207697	A	G	ENSMUST00000056433.6	1	ENSMUSG00000000194	missense	K/R	441	Gpr107	ENSMUST00000056433.6:c.1322A>G	ENSMUSP00000056739.5:p.Lys441Arg	H-2-Kb	8	7	5	INLARLRL	INLAKLRL	NetMHCpan	74.3	156.3	2.104	290	0.107	185.389	321.112	1.732	315.08	157.11	156.3	74.3	327.1447838	213.6682534	353.7854762	227.3735801	M2_p20	0.1	0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.107	290	0	0	NA	2qB	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.498760292	sgMsh2	cell line
chr19	44973627	44973627	T	C	ENSMUST00000096053.4	1	ENSMUSG00000036097	missense	I/T	1081	Slf2	ENSMUST00000096053.4:c.3242T>C	ENSMUSP00000093758.3:p.Ile1081Thr	H-2-Kb	8	5	7	AYYLTYTL	AYYLTYIL	NetMHC	157.88	325.67	2.063	640	0.214	364.856	839.945	2.302	325.67	157.88	374.5	180.5	1305.389154	569.823033	1434.630303	549.2119775	M2_p20	0.328571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.215	640	0	0	NA	19qC3	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr19	44973627	44973627	T	C	ENSMUST00000096053.4	1	ENSMUSG00000036097	missense	I/T	1081	Slf2	ENSMUST00000096053.4:c.3242T>C	ENSMUSP00000093758.3:p.Ile1081Thr	H-2-Kb	8	6	6	YYLTYTLL	YYLTYILL	NetMHCpan	165.3	361.7	2.188	640	0.214	245.167	350.171	1.428	417.91	195.39	361.7	165.3	333.2268594	301.8144301	338.6413603	294.9442949	M2_p20	1.057142857	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.215	640	0	0	NA	19qC3	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr2	43629049	43629049	A	G	ENSMUST00000028223.8	1	ENSMUSG00000026866	missense	K/E	277	Kynu	ENSMUST00000028223.8:c.829A>G	ENSMUSP00000028223.2:p.Lys277Glu	H-2-Kb	8	8	4	CSYEYLNS	CSYKYLNS	SMM	50.903	53.179	1.045	156	0.487	175.235	158.025	0.902	211.88	238.85	222.6	290.5	53.17897962	50.90260401	104.169361	111.6194813	M2_p20	-1.057142857	-0.585714286	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.472	156	0	0	NA	2qB	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr2	19235585	19235585	A	T	ENSMUST00000114640.8	1	ENSMUSG00000037683	missense	K/M	51	Armc3	ENSMUST00000114640.8:c.152A>T	ENSMUSP00000110287.2:p.Lys51Met	H-2-Kb	8	8	4	AIYMFALK	AIYKFALK	SMMPMBEC	38.436	51.374	1.337	124	0.065	153.22	200.446	1.308	331.59	244.96	1278.2	1058.3	69.30107956	61.48086937	51.37360001	38.43616066	M2_p20	1.371428571	2.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.074	124	0	0	NA	2qA3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.344937024	sgMsh2	cell line
chr2	60428573	60428573	T	C	ENSMUST00000112525.4	1	ENSMUSG00000054580	missense	Q/R	1157	Pla2r1	ENSMUST00000112525.4:c.3470A>G	ENSMUSP00000108144.3:p.Gln1157Arg	H-2-Kb	8	11	1	RAFLTVLL	QAFLTVLL	NetMHCpan	172.8	376	2.176	160	0.075	336.516	489.016	1.453	398.95	354.07	376	172.8	579.0819124	356.2377999	666.4076901	318.9627742	M2_p20	2.785714286	2.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.084	160	0	0	NA	2qC1.1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.391550136	sgMsh2	cell line
chr2	37405335	37405335	A	C	ENSMUST00000100143.9	5	ENSMUSG00000075376	missense	V/G	223	Rc3h2	ENSMUST00000100143.9:c.668T>G	ENSMUSP00000097721.3:p.Val223Gly	H-2-Kb	8	8	4	VLFGVQRL	VLFVVQRL	NetMHCpan	165.8	52.4	0.316	179	0.369	207.26	71.12	0.343	63.22	364.58	52.4	165.8	79.02054124	199.8664966	79.93555598	214.6545013	M2_p20	0.885714286	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.379	179	0	0	NA	2qB	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr19	39513332	39513332	C	A	ENSMUST00000025968.4	1	ENSMUSG00000025003	missense	L/I	110	Cyp2c39	ENSMUST00000025968.4:c.328C>A	ENSMUSP00000025968.4:p.Leu110Ile	H-2-Kb	8	11	1	IGIVFSNG	LGIVFSNG	SMM	75.464	357.882	4.742	275	0.116	303.695	1406.518	4.631	3944.61	516.87	2426.9	728.5	357.8821189	75.46403103	386.1357391	90.51905263	M2_p20	0.914285714	1.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.133	275	0	0	NA	19qC3	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.619954382	sgMsh2	cell line
chr19	44973627	44973627	T	C	ENSMUST00000096053.4	1	ENSMUSG00000036097	missense	I/T	1081	Slf2	ENSMUST00000096053.4:c.3242T>C	ENSMUSP00000093758.3:p.Ile1081Thr	H-2-Kb	9	5	7	AYYLTYTLL	AYYLTYILL	NetMHC	38.65	71.83	1.858	640	0.214	52.197	70.367	1.348	71.83	38.65	163.4	63.7	44.06664633	41.69749833	68.90488306	62.69746764	M2_p20	1.057142857	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.215	640	0	0	NA	19qC3	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr19	44973627	44973627	T	C	ENSMUST00000096053.4	1	ENSMUSG00000036097	missense	I/T	1081	Slf2	ENSMUST00000096053.4:c.3242T>C	ENSMUSP00000093758.3:p.Ile1081Thr	H-2-Kb	9	4	8	QAYYLTYTL	QAYYLTYIL	NetMHCpan	118.9	287.1	2.415	640	0.214	148.952	306.938	2.061	357.17	145.46	287.1	118.9	170.2589693	152.4438821	326.7758854	276.8534884	M2_p20	0.328571429	0.328571429	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.215	640	0	0	NA	19qC3	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr2	31207697	31207697	A	G	ENSMUST00000056433.6	1	ENSMUSG00000000194	missense	K/R	441	Gpr107	ENSMUST00000056433.6:c.1322A>G	ENSMUSP00000056739.5:p.Lys441Arg	H-2-Kb	9	7	5	INLARLRLF	INLAKLRLF	SMM	221.366	331.215	1.496	290	0.107	236.336	355.812	1.506	295.92	230.43	501.3	275	331.2150024	221.3655323	380.4083139	242.2423104	M2_p20	1	1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.107	290	0	0	NA	2qB	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.498760292	sgMsh2	cell line
chr19	60467939	60467939	A	C	ENSMUST00000051277.3	NA	ENSMUSG00000045052	missense	I/S	63	Prlhr	ENSMUST00000051277.3:c.188T>G	ENSMUSP00000063114.2:p.Ile63Ser	H-2-Kb	9	10	2	LSVMLYSIV	LIVMLYSIV	NetMHCpan	342.1	1802.4	5.269	197	0.076	367.958	863.524	2.347	1174.83	385.77	1802.4	342.1	552.2172896	391.8411118	519.0987702	350.1466697	M2_p20	2.357142857	2.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.091	197	0	0	NA	19qD3	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.424179314	sgMsh2	cell line
chr19	25675615	25675615	T	C	ENSMUST00000053068.6	1	ENSMUSG00000048138	missense	V/A	197	Dmrt2	ENSMUST00000053068.6:c.590T>C	ENSMUSP00000059654.5:p.Val197Ala	H-2-Kb	9	5	7	AVYQRQARA	AVYQRQVRA	SMMPMBEC	420.969	570.493	1.355	162	0.123	488.665	912.343	1.867	1026.49	423.84	1659.8	1137	798.1968324	553.4902819	570.4925797	420.9688878	M2_p20	-1.957142857	-0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.114	162	0	0	NA	19qC1	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.53138947	sgMsh2	cell line
chr19	44973627	44973627	T	C	ENSMUST00000096053.4	1	ENSMUSG00000036097	missense	I/T	1081	Slf2	ENSMUST00000096053.4:c.3242T>C	ENSMUSP00000093758.3:p.Ile1081Thr	H-2-Kb	9	8	4	LTYTLLHLV	LTYILLHLV	NetMHCpan	420.8	764.9	1.818	640	0.214	426.798	410.951	0.963	451.86	440.77	764.9	420.8	360.6699835	420.8332054	370.0411313	432.7628777	M2_p20	1.485714286	1.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.215	640	0	0	NA	19qC3	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr2	87608316	87608316	A	C	ENSMUST00000216580.1	5	ENSMUSG00000059205	missense	K/N	309	Olfr1130	ENSMUST00000216580.1:c.927A>C	ENSMUSP00000150905.1:p.Lys309Asn	H-2-Db	9	12	5	AALRNLLRI	AALRKLLRI	NetMHC	16.95	4415.81	260.52	347	0.138	25.138	2239.116	89.073	4415.81	16.95	3115	19.4	1003.737154	30.87592661	1363.232716	40.60411041	M2_p20	0.485714286	1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.142	347	0	0	NA	2qD	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.661906182	sgMsh2	cell line
chr2	121336461	121336461	T	G	ENSMUST00000052029.9	1	ENSMUSG00000033526	missense	S/R	870	Ppip5k1	ENSMUST00000052029.9:c.2608A>C	ENSMUSP00000057632.3:p.Ser870Arg	H-2-Db	9	11	1	RAISELNYM	SAISELNYM	NetMHCpan	138.7	63.8	0.46	135	0.422	375.561	214.339	0.571	146.47	381.66	63.8	138.7	340.1104688	520.7388744	282.2084413	369.4621898	M2_p20	0.157142857	0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.435	135	0	0	NA	2qE5	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr2	88274180	88274180	G	T	ENSMUST00000216887.1	NA	ENSMUSG00000075132	missense	L/I	290	Olfr1173	ENSMUST00000216887.1:c.868C>A	ENSMUSP00000149617.1:p.Leu290Ile	H-2-Db	9	9	3	YSIRNKDVK	YSLRNKDVK	SMMPMBEC	141.765	164.274	1.159	235	0.034	305.089	389.992	1.278	593.51	443.6	3742.6	2477.9	186.4747356	166.5789039	164.2744417	141.7653192	M2_p20	-1.514285714	-1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.046	235	0	0	NA	2qD	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.214420312	sgMsh2	cell line
chr2	67511630	67511630	A	C	ENSMUST00000028410.3	1	ENSMUSG00000027022	missense	N/T	1405	Xirp2	ENSMUST00000028410.3:c.4214A>C	ENSMUSP00000028410.3:p.Asn1405Thr	H-2-Kb	8	10	2	VTFTKTQL	VNFTKTQL	NetMHCpan	35.5	28.4	0.8	198	0.096	67.148	78.98	1.176	65.97	60.55	28.4	35.5	96.76983488	86.84403626	91.98986892	73.74625996	M2_p20	-0.414285714	-0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.095	198	0	0	NA	2qC1.3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.442824558	sgMsh2	cell line
chr2	132240580	132240580	A	G	ENSMUST00000110164.7	2	ENSMUSG00000027341	missense	F/S	90	Tmem230	ENSMUST00000110164.7:c.269T>C	ENSMUSP00000105793.1:p.Phe90Ser	H-2-Kb	8	11	1	SLPGFYHL	FLPGFYHL	NetMHCpan	98.2	522.1	5.317	153	0.438	164.475	459.527	2.794	694.44	114.79	522.1	98.2	387.9180607	214.1608096	396.9538331	229.4774419	M2_p20	0.557142857	0.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.429	153	0	0	NA	2qF2	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr2	87608316	87608316	A	C	ENSMUST00000216580.1	5	ENSMUSG00000059205	missense	K/N	309	Olfr1130	ENSMUST00000216580.1:c.927A>C	ENSMUSP00000150905.1:p.Lys309Asn	H-2-Kb	8	10	7	VIAALRNL	VIAALRKL	SMM	107.335	432.255	4.027	347	0.138	166.248	653.535	3.931	1183.91	161.99	714.5	181.7	432.2549746	107.3346637	592.570463	170.5061311	M2_p20	1.1	1.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.142	347	0	0	NA	2qD	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.661906182	sgMsh2	cell line
chr2	76633559	76633559	C	G	ENSMUST00000002808.6	1	ENSMUSG00000002731	missense	G/A	253	Prkra	ENSMUST00000002808.6:c.758G>C	ENSMUSP00000002808.6:p.Gly253Ala	H-2-Kb	8	10	2	QAFNITYL	QGFNITYL	NetMHC	165.08	354.06	2.145	107	0.056	336.593	461.286	1.37	354.06	165.08	338	183.7	568.5124764	489.4856902	598.0534499	544.1767718	M2_p20	1.057142857	1.057142857	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.069	107	0	0	NA	2qC3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.321630469	sgMsh2	cell line
chr2	74569043	74569043	A	T	ENSMUST00000064503.12	1	ENSMUSG00000009207	missense	I/N	52	Lnpk	ENSMUST00000064503.12:c.155T>A	ENSMUSP00000066891.6:p.Ile52Asn	H-2-Kb	8	5	7	LIIYSSNL	LIIYSSIL	NetMHCpan	160.5	1177.7	7.338	132	0.114	274.863	2428.794	8.836	2288.73	172.38	1177.7	160.5	2568.857419	377.3462166	2997.367541	401.5503419	M2_p20	0.914285714	0.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.127	132	0	0	NA	2qC3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.591986515	sgMsh2	cell line
chr2	74569043	74569043	A	T	ENSMUST00000064503.12	1	ENSMUSG00000009207	missense	I/N	52	Lnpk	ENSMUST00000064503.12:c.155T>A	ENSMUSP00000066891.6:p.Ile52Asn	H-2-Kb	8	11	1	NLYLFTCL	ILYLFTCL	NetMHCpan	101.1	13.2	0.131	132	0.114	122.734	10.277	0.084	8.08	220.21	13.2	101.1	11.50111643	137.6385219	9.051905263	107.830098	M2_p20	2.1	2.1	FALSE	FALSE	FALSE	1	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.127	132	0	0	NA	2qC3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.591986515	sgMsh2	cell line
chr2	119139420	119139420	GT	G	ENSMUST00000094695.11	1	ENSMUSG00000070730	FS	T/X	387	Rmdn3	ENSMUST00000094695.11:c.1159del	ENSMUSP00000092283.5:p.Thr387ArgfsTer46	H-2-Kb	8	37	0	YSQDFQKL	NA	SMM	227.898	NA	NA	114	0.5	263.57	NA	NA	NA	233.55	NA	302.9	NA	227.8977303	NA	293.5891489	M2_p20	-1.228571429	-1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.498	114	0	0	NA	2qE5	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr2	119294259	119294259	A	G	ENSMUST00000037280.4	1	ENSMUSG00000034216	missense	M/V	556	Vps18	ENSMUST00000037280.4:c.1666A>G	ENSMUSP00000036915.4:p.Met556Val	H-2-Kb	8	11	1	VVYFAVIM	MVYFAVIM	NetMHCpan	108.7	357.2	3.286	89	0.472	418.279	1034.512	2.473	1515.54	417.05	357.2	108.7	894.828896	419.5077612	1174.194387	554.2937734	M2_p20	2.585714286	2.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.455	89	0	0	NA	2qE5	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr2	94326726	94326726	A	T	ENSMUST00000111238.7	5	ENSMUSG00000027194	missense	W/R	977	Ttc17	ENSMUST00000111238.7:c.2929T>A	ENSMUSP00000106869.1:p.Trp977Arg	H-2-Kb	8	5	7	TAIVSTRL	TAIVSTWL	NetMHC	420.73	4421.73	10.51	152	0.059	434.815	2202.041	5.064	4421.73	420.73	2675.3	481.5	1654.778997	442.3234863	1728.781076	427.3069928	M2_p20	1.185714286	1.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.062	152	0	0	NA	2qE1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.289001291	sgMsh2	cell line
chr2	90296129	90296129	A	G	ENSMUST00000214356.2	3	ENSMUSG00000080809	missense	V/A	244	Olfr1273-ps	ENSMUST00000214356.2:c.731T>C	ENSMUSP00000150797.1:p.Val244Ala	H-2-Kb	8	10	2	VAILFFGP	VVILFFGP	SMM	225.289	228.95	1.016	417	0.06	379.677	484.135	1.275	739.32	511.76	1159.7	523.3	228.9496585	225.2890066	228.9496585	247.5939338	M2_p20	1.957142857	2.785714286	FALSE	FALSE	TRUE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.059	417	0	0	NA	2qE1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.275017357	sgMsh2	cell line
chr2	88896778	88896778	G	A	ENSMUST00000214297.1	5	ENSMUSG00000075114	missense	T/I	273	Olfr1208	ENSMUST00000214297.1:c.818C>T	ENSMUSP00000149695.1:p.Thr273Ile	H-2-Kb	8	5	7	VFALFYIM	VFALFYTM	SMM	271.481	118.506	0.437	459	0.061	447.943	152.947	0.341	195.58	518.34	114.7	406.4	118.5059074	271.4813499	187.3872337	489.4856902	M2_p20	2.328571429	2.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.066	459	0	0	NA	2qE1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.307646535	sgMsh2	cell line
chr2	88124676	88124676	A	G	ENSMUST00000217575.2	5	ENSMUSG00000101078	missense	F/S	103	Olfr1166	ENSMUST00000217575.2:c.308T>C	ENSMUSP00000149099.1:p.Phe103Ser	H-2-Kb	8	11	1	SFFICTFV	FFFICTFV	SMM	232.135	420.475	1.811	529	0.429	479.712	1350.305	2.815	2228.83	686.69	6017.5	1323.2	420.4748265	232.1346655	471.7805149	272.7344509	M2_p20	2.7	2.7	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.435	529	0	0	NA	2qD	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr2	90296129	90296129	A	G	ENSMUST00000214356.2	3	ENSMUSG00000080809	missense	V/A	244	Olfr1273-ps	ENSMUST00000214356.2:c.731T>C	ENSMUSP00000150797.1:p.Val244Ala	H-2-Kb	8	11	1	AILFFGPA	VILFFGPA	SMMPMBEC	255.705	74.6	0.292	417	0.06	409.107	103.202	0.252	125.17	696.41	173	512.2	81.23440428	306.013087	74.60020141	255.7054591	M2_p20	1.957142857	1.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.059	417	0	0	NA	2qE1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.275017357	sgMsh2	cell line
chr2	88896778	88896778	G	A	ENSMUST00000214297.1	5	ENSMUSG00000075114	missense	T/I	273	Olfr1208	ENSMUST00000214297.1:c.818C>T	ENSMUSP00000149695.1:p.Thr273Ile	H-2-Kb	8	6	6	FALFYIMI	FALFYTMI	SMM	402.476	364.536	0.906	459	0.061	438.775	342.368	0.78	320.2	723.86	95.4	443.3	364.5356443	402.476011	378.2160895	434.2501729	M2_p20	2.571428571	2.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.066	459	0	0	NA	2qE1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.307646535	sgMsh2	cell line
chr2	88896778	88896778	G	A	ENSMUST00000214297.1	5	ENSMUSG00000075114	missense	T/I	273	Olfr1208	ENSMUST00000214297.1:c.818C>T	ENSMUSP00000149695.1:p.Thr273Ile	H-2-Kb	8	4	8	KVFALFYI	KVFALFYT	NetMHCpan	171	1887.2	11.036	459	0.061	456.025	2002.147	4.39	5435.38	889.82	1887.2	171	2117.093311	482.7696948	1405.206015	429.2793522	M2_p20	2.657142857	2.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.066	459	0	0	NA	2qE1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.307646535	sgMsh2	cell line
chr2	132240580	132240580	A	G	ENSMUST00000110164.7	2	ENSMUSG00000027341	missense	F/S	90	Tmem230	ENSMUST00000110164.7:c.269T>C	ENSMUSP00000105793.1:p.Phe90Ser	H-2-Kb	9	10	2	VSLPGFYHL	VFLPGFYHL	NetMHC	22.77	187.13	8.218	153	0.438	93.901	246.108	2.621	187.13	22.77	200.4	30	291.8166046	157.8010905	341.3893746	169.9221522	M2_p20	0.557142857	0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.429	153	0	0	NA	2qF2	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr2	90296129	90296129	A	G	ENSMUST00000214356.2	3	ENSMUSG00000080809	missense	V/A	244	Olfr1273-ps	ENSMUST00000214356.2:c.731T>C	ENSMUSP00000150797.1:p.Val244Ala	H-2-Kb	9	10	2	VAILFFGPA	VVILFFGPA	NetMHC	27.49	37.64	1.369	417	0.06	72.942	107.929	1.48	37.64	27.49	98.3	44.2	120.2568988	106.9325688	117.5574075	101.6833861	M2_p20	1.957142857	2.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.059	417	0	0	NA	2qE1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.275017357	sgMsh2	cell line
chr2	85923622	85923622	T	G	ENSMUST00000217615.1	5	ENSMUSG00000042863	missense	M/R	118	Olfr1026	ENSMUST00000217615.1:c.353T>G	ENSMUSP00000150995.1:p.Met118Arg	H-2-Kb	9	11	1	RAYDRYVAI	MAYDRYVAI	NetMHCpan	22.2	14.4	0.649	316	0.044	50.098	30.259	0.604	27.08	37.93	14.4	22.2	39.27443988	74.66378462	33.43874735	62.26586131	M2_p20	-0.014285714	-0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.053	316	0	0	NA	2qD	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.24704949	sgMsh2	cell line
chr2	88896778	88896778	G	A	ENSMUST00000214297.1	5	ENSMUSG00000075114	missense	T/I	273	Olfr1208	ENSMUST00000214297.1:c.818C>T	ENSMUSP00000149695.1:p.Thr273Ile	H-2-Kb	9	8	4	LFYIMIAPL	LFYTMIAPL	NetMHC	43.97	45.19	1.028	459	0.061	74.683	76.424	1.023	45.19	43.97	66.7	119	88.33035991	75.70246132	86.14895227	73.66310144	M2_p20	1.942857143	2.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.066	459	0	0	NA	2qE1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.307646535	sgMsh2	cell line
chr2	76742229	76742229	A	G	ENSMUST00000111846.8	5	ENSMUSG00000051747	missense	F/L	24361	Ttn	ENSMUST00000111846.8:c.73081T>C	ENSMUSP00000107477.2:p.Phe24361Leu	H-2-Kb	9	3	9	IQPSFKLPL	IQPSFKLPF	NetMHC	49.33	307.19	6.227	235	0.455	201.9	473.634	2.346	307.19	49.33	410.1	85.3	537.1678354	318.5004131	805.8421878	465.8541836	M2_p20	0.357142857	0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.445	235	0	0	NA	2qC3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr2	67511630	67511630	A	C	ENSMUST00000028410.3	1	ENSMUSG00000027022	missense	N/T	1405	Xirp2	ENSMUST00000028410.3:c.4214A>C	ENSMUSP00000028410.3:p.Asn1405Thr	H-2-Kb	9	10	2	VTFTKTQLL	VNFTKTQLL	NetMHCpan	35.2	22.4	0.636	198	0.096	64.993	46.326	0.713	41.94	50.35	22.4	35.2	50.71191374	79.63610307	56.26651281	82.27161071	M2_p20	0.228571429	0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.095	198	0	0	NA	2qC1.3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.442824558	sgMsh2	cell line
chr2	74569043	74569043	A	T	ENSMUST00000064503.12	1	ENSMUSG00000009207	missense	I/N	52	Lnpk	ENSMUST00000064503.12:c.155T>A	ENSMUSP00000066891.6:p.Ile52Asn	H-2-Kb	9	10	2	SNLYLFTCL	SILYLFTCL	NetMHCpan	51.2	117	2.285	132	0.114	102.868	158.091	1.537	98.31	56.37	117	51.2	202.3531643	152.7953016	199.1819593	149.3653979	M2_p20	2.1	2.1	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.127	132	0	0	NA	2qC3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.591986515	sgMsh2	cell line
chr2	111335694	111335694	C	A	ENSMUST00000099618.1	NA	ENSMUSG00000096554	missense	R/M	128	Olfr1282	ENSMUST00000099618.1:c.383G>T	ENSMUSP00000097213.1:p.Arg128Met	H-2-Kb	9	10	2	CMPLHYSSI	CRPLHYSSI	NetMHC	94.4	1410.95	14.947	1233	0.058	136.949	1266.807	9.25	1410.95	94.4	2800.2	169.4	724.6194716	104.4984864	1122.664526	174.2809827	M2_p20	0.085714286	0.185714286	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.059	1233	0	0	NA	2qE3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.275017357	sgMsh2	cell line
chr2	74569043	74569043	A	T	ENSMUST00000064503.12	1	ENSMUSG00000009207	missense	I/N	52	Lnpk	ENSMUST00000064503.12:c.155T>A	ENSMUSP00000066891.6:p.Ile52Asn	H-2-Kb	9	6	6	IIYSSNLYL	IIYSSILYL	NetMHCpan	72.8	35.3	0.485	132	0.114	137.548	81.369	0.592	59.91	122.3	35.3	72.8	102.8276712	152.7953016	140.0393222	190.2172944	M2_p20	-0.014285714	0.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.127	132	0	0	NA	2qC3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.591986515	sgMsh2	cell line
chr2	68118819	68118819	A	G	ENSMUST00000112346.2	NA	ENSMUSG00000034780	missense	S/G	293	B3galt1	ENSMUST00000112346.2:c.877A>G	ENSMUSP00000107965.2:p.Ser293Gly	H-2-Kb	9	10	2	YGLCRYRRV	YSLCRYRRV	NetMHC	124.84	39.29	0.315	343	0.055	342.339	134.347	0.392	39.29	124.84	116.2	280.8	165.6189397	475.4556362	152.4930322	403.8778168	M2_p20	-0.614285714	-0.614285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.053	343	0	0	NA	2qC1.3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.24704949	sgMsh2	cell line
chr2	86160001	86160001	T	C	ENSMUST00000215624.1	NA	ENSMUSG00000075202	missense	Y/C	123	Olfr1042	ENSMUST00000215624.1:c.368A>G	ENSMUSP00000151053.1:p.Tyr123Cys	H-2-Kb	9	6	6	MAYDRCVAI	MAYDRYVAI	NetMHCpan	132.7	14.4	0.109	451	0.051	145.305	30.259	0.208	27.08	145.65	14.4	132.7	39.27443988	184.1238299	33.43874735	144.9606074	M2_p20	0.528571429	0.528571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.046	451	0	0	NA	2qD	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.214420312	sgMsh2	cell line
chr2	87434694	87434694	T	G	ENSMUST00000215909.1	5	ENSMUSG00000050772	missense	L/R	69	Olfr1124	ENSMUST00000215909.1:c.206T>G	ENSMUSP00000150244.1:p.Leu69Arg	H-2-Kb	9	6	6	PMYFFRGNF	PMYFFLGNF	SMM	65.029	38.558	0.593	209	0.053	131.203	106.721	0.813	157.82	173.23	496.2	322.1	38.55760057	65.02943789	55.62243536	89.17641311	M2_p20	-0.185714286	-0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.054	209	0	0	NA	2qD	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.251710802	sgMsh2	cell line
chr2	91284247	91284247	A	G	ENSMUST00000102594.10	1	ENSMUSG00000040591	missense	F/L	147	1110051M20Rik	ENSMUST00000102594.10:c.439T>C	ENSMUSP00000099654.4:p.Phe147Leu	H-2-Kb	9	8	4	QIQLYYSEF	QIQFYYSEF	SMM	177.873	191.034	1.074	164	0.39	233.567	248.13	1.062	224.46	181.21	352.1	442.3	191.0337056	177.8729877	271.8003427	285.9235978	M2_p20	-0.542857143	-0.3	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.388	164	0	0	NA	2qE1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr2	119139420	119139420	GT	G	ENSMUST00000094695.11	1	ENSMUSG00000070730	FS	T/X	387	Rmdn3	ENSMUST00000094695.11:c.1159del	ENSMUSP00000092283.5:p.Thr387ArgfsTer46	H-2-Kb	9	45	0	DGYIFLSAI	NA	NetMHC	187.49	NA	NA	114	0.5	309.473	NA	NA	NA	187.49	NA	212.4	NA	406.5462879	NA	510.7989549	M2_p20	2.185714286	2.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.498	114	0	0	NA	2qE5	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr2	91284247	91284247	A	G	ENSMUST00000102594.10	1	ENSMUSG00000040591	missense	F/L	147	1110051M20Rik	ENSMUST00000102594.10:c.439T>C	ENSMUSP00000099654.4:p.Phe147Leu	H-2-Kb	9	9	3	IQLYYSEFL	IQFYYSEFL	NetMHCpan	192.4	29.6	0.154	164	0.39	382.31	125.453	0.328	51.33	204.72	29.6	192.4	199.5767748	559.8993973	219.4067579	608.4851727	M2_p20	0.5	0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.388	164	0	0	NA	2qE1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr2	88896778	88896778	G	A	ENSMUST00000214297.1	5	ENSMUSG00000075114	missense	T/I	273	Olfr1208	ENSMUST00000214297.1:c.818C>T	ENSMUSP00000149695.1:p.Thr273Ile	H-2-Kb	9	5	7	VFALFYIMI	VFALFYTMI	SMM	71.468	67.625	0.946	459	0.061	155.293	91.289	0.588	95.23	214.59	176.2	1002.7	67.62542383	71.46773197	87.34740358	95.99530659	M2_p20	2.571428571	2.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.066	459	0	0	NA	2qE1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.307646535	sgMsh2	cell line
chr2	91284247	91284247	A	G	ENSMUST00000102594.10	1	ENSMUSG00000040591	missense	F/L	147	1110051M20Rik	ENSMUST00000102594.10:c.439T>C	ENSMUSP00000099654.4:p.Phe147Leu	H-2-Kb	9	3	9	FLFAFQIQL	FLFAFQIQF	NetMHCpan	235.9	1129.7	4.789	164	0.39	317.333	742.822	2.341	735.56	268.86	1129.7	235.9	750.0841699	444.7438999	632.7760017	365.8053055	M2_p20	1.242857143	2.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.388	164	0	0	NA	2qE1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr2	117177703	117177703	A	G	ENSMUST00000028829.12	1	ENSMUSG00000027351	missense	I/M	363	Spred1	ENSMUST00000028829.12:c.1089A>G	ENSMUSP00000028829.6:p.Ile363Met	H-2-Kb	9	10	2	CMYQVSCML	CIYQVSCML	SMM	228.618	511.811	2.239	153	0.418	331.205	563.356	1.701	483.81	295.31	614.9	367.1	511.811453	228.6177783	851.6281337	411.386466	M2_p20	0.971428571	0.971428571	TRUE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.423	153	0	0	NA	2qE5	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr2	111379635	111379635	T	C	ENSMUST00000062407.5	5	ENSMUSG00000108931	missense	F/L	212	Olfr1284	ENSMUST00000062407.5:c.634T>C	ENSMUSP00000052153.4:p.Phe212Leu	H-2-Kb	9	5	7	MTLGTFLLL	MTLGTFFLL	NetMHCpan	246.9	192.4	0.779	417	0.46	312.574	264.729	0.847	258.37	322.38	192.4	246.9	271.0878168	302.7680195	408.5545015	416.1500968	M2_p20	2.414285714	2.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.446	417	0	0	NA	2qE3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr2	76705729	76705729	T	G	ENSMUST00000111846.8	5	ENSMUSG00000051747	missense	K/T	33349	Ttn	ENSMUST00000111846.8:c.100046A>C	ENSMUSP00000107477.2:p.Lys33349Thr	H-2-Kb	9	6	6	SSFMGTSSM	SSFMGKSSM	NetMHCpan	116.4	237.6	2.041	156	0.231	335.783	412.729	1.229	424.36	327.81	237.6	116.4	424.7271271	356.5414284	401.0975415	343.7557727	M2_p20	0.557142857	0.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.247	156	0	0	NA	2qC3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr2	89482636	89482636	A	C	ENSMUST00000215055.1	5	ENSMUSG00000075086	missense	F/L	166	Olfr1241	ENSMUST00000215055.1:c.498T>G	ENSMUSP00000149914.1:p.Phe166Leu	H-2-Kb	9	3	9	LLFVYNLPL	LLFVYNLPF	NetMHCpan	102.6	478.8	4.667	164	0.104	264.069	488.332	1.849	856.89	332.91	478.8	102.6	497.86317	295.1956816	402.9489236	232.9431801	M2_p20	1.171428571	1.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.119	164	0	0	NA	2qE1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.554696026	sgMsh2	cell line
chr2	88896778	88896778	G	A	ENSMUST00000214297.1	5	ENSMUSG00000075114	missense	T/I	273	Olfr1208	ENSMUST00000214297.1:c.818C>T	ENSMUSP00000149695.1:p.Thr273Ile	H-2-Kb	9	4	8	KVFALFYIM	KVFALFYTM	NetMHCpan	145.5	48.3	0.332	459	0.061	301.242	205.981	0.684	183.87	502.81	48.3	145.5	228.091972	254.7475407	294.6117067	347.7362769	M2_p20	2.328571429	2.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.066	459	0	0	NA	2qE1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.307646535	sgMsh2	cell line
chr2	158768178	158768178	C	T	ENSMUST00000029183.2	1	ENSMUSG00000027654	missense	P/L	22	Fam83d	ENSMUST00000029183.2:c.65C>T	ENSMUSP00000029183.2:p.Pro22Leu	H-2-Db	9	8	4	CGPLNPTEL	CGPPNPTEL	NetMHC	65.56	425.32	6.487	27	0.259	216.905	644.766	2.973	425.32	65.56	306.4	93.7	864.2114181	340.1104688	1154.968129	410.7428385	M2_p20	-0.471428571	-0.214285714	TRUE	FALSE	FALSE	1	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.367	27	0	0	NA	2qH1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr2	180583499	180583499	A	G	ENSMUST00000029085.8	1	ENSMUSG00000027569	missense	T/A	83	Mrgbp	ENSMUST00000029085.8:c.247A>G	ENSMUSP00000029085.8:p.Thr83Ala	H-2-Db	9	10	2	SAMYDMQAL	STMYDMQAL	NetMHCpan	338.9	3104.4	9.16	89	0.393	412.293	3121.081	7.57	4556.07	341.95	3104.4	338.9	3137.762006	482.636319	2975.568825	520.6789256	M2_p20	0.157142857	0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.419	89	0	0	NA	2qH4	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr3	80860236	80860236	AT	A	ENSMUST00000029654.14	1	ENSMUSG00000028020	FS	I/X	226	Glrb	ENSMUST00000029654.14:c.676del	ENSMUSP00000029654.8:p.Ile226LeufsTer37	H-2-Db	9	20	0	RRISNMATV	NA	SMMPMBEC	200.249	NA	NA	156	0.391	384.587	NA	NA	NA	531.15	NA	1363	NA	238.0235894	NA	200.2488359	M2_p20	1.057142857	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.392	156	0	0	NA	3qE3	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr2	180583499	180583499	A	G	ENSMUST00000029085.8	1	ENSMUSG00000027569	missense	T/A	83	Mrgbp	ENSMUST00000029085.8:c.247A>G	ENSMUSP00000029085.8:p.Thr83Ala	H-2-Kb	8	11	1	AMYDMQAL	TMYDMQAL	NetMHCpan	73.9	56.7	0.767	89	0.393	127.758	106.842	0.836	70.22	74.49	56.7	73.9	143.4630303	181.0256018	185.6692572	236.4503711	M2_p20	0.157142857	0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.419	89	0	0	NA	2qH4	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr3	35806800	35806800	T	G	ENSMUST00000029257.14	1	ENSMUSG00000037400	missense	F/L	345	Atp11b	ENSMUST00000029257.14:c.1035T>G	ENSMUSP00000029257.8:p.Phe345Leu	H-2-Kb	8	5	7	ISDFLALL	ISDFLAFL	NetMHCpan	60.7	67.1	1.105	117	0.316	109.905	90.01	0.819	115.83	88.97	67.1	60.7	88.66250554	133.5795574	91.35661511	130.8398387	M2_p20	1.671428571	1.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.318	117	0	0	NA	3qB	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr3	28794409	28794409	G	A	ENSMUST00000060500.8	1	ENSMUSG00000050192	missense	C/Y	139	Eif5a2	ENSMUST00000060500.8:c.416G>A	ENSMUSP00000050289.7:p.Cys139Tyr	H-2-Kb	8	7	5	VSVMYAMS	VSVMCAMS	SMM	72.734	814.217	11.194	464	0.185	100.979	2855.808	28.281	5114.17	120.91	4897.4	389.8	814.2166892	72.73442335	792.027024	81.04757034	M2_p20	0.985714286	1.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.183	464	0	0	NA	3qA3	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.853019939	sgMsh2	cell line
chr2	153891986	153891986	A	C	ENSMUST00000028983.2	1	ENSMUSG00000027481	missense	K/T	416	Bpifb2	ENSMUST00000028983.2:c.1247A>C	ENSMUSP00000028983.2:p.Lys416Thr	H-2-Kb	8	6	6	STVFQTPL	STVFQKPL	NetMHCpan	96.4	342.9	3.557	59	0.542	260.907	627.482	2.405	822.31	247.82	342.9	96.4	544.1767718	273.9933359	710.7878574	387.0258739	M2_p20	0.614285714	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.479	59	0	0	NA	2qH1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr3	45380504	45380504	G	A	ENSMUST00000166126.6	1	ENSMUSG00000049100	missense	E/K	418	Pcdh10	ENSMUST00000166126.6:c.1252G>A	ENSMUSP00000131073.1:p.Glu418Lys	H-2-Kb	8	7	5	TIVTKAPL	TIVTEAPL	NetMHC	297.89	415.79	1.396	155	0.168	369.401	350.033	0.948	415.79	297.89	1028.7	826.5	284.2758718	410.9036509	184.8161845	327.8989304	M2_p20	1.157142857	1.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.176	155	0	0	NA	3qB	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.820390761	sgMsh2	cell line
chr2	153891986	153891986	A	C	ENSMUST00000028983.2	1	ENSMUSG00000027481	missense	K/T	416	Bpifb2	ENSMUST00000028983.2:c.1247A>C	ENSMUSP00000028983.2:p.Lys416Thr	H-2-Kb	8	7	5	TVFQTPLL	TVFQKPLL	NetMHCpan	150.5	189.5	1.259	59	0.542	260.16	483.046	1.857	548.36	326.28	189.5	150.5	511.3755976	277.8049629	454.715753	242.5157786	M2_p20	1.257142857	1.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.479	59	0	0	NA	2qH1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr3	88449737	88449737	A	G	ENSMUST00000029700.11	1	ENSMUSG00000028064	missense	L/P	309	Sema4a	ENSMUST00000029700.11:c.926T>C	ENSMUSP00000029700.5:p.Leu309Pro	H-2-Kb	8	5	7	IIRHAVPL	IIRHAVLL	SMM	169.332	448.477	2.649	117	0.197	247.434	538.144	2.175	1021.35	349.03	569.6	310.9	448.476819	169.3323751	506.6872779	183.9670312	M2_p20	0.714285714	0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.211	117	0	0	NA	3qF1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.98353665	sgMsh2	cell line
chr3	90190923	90190923	C	T	ENSMUST00000029548.8	5	ENSMUSG00000027939	missense	S/L	1394	Nup210l	ENSMUST00000029548.8:c.4181C>T	ENSMUSP00000029548.4:p.Ser1394Leu	H-2-Kb	8	8	4	RTLLAFPL	RTLSAFPL	NetMHCpan	184	237.9	1.293	325	0.295	202.884	249.781	1.231	490.66	429.13	237.9	184	235.9065504	193.0812048	261.6616044	212.686537	M2_p20	1.957142857	1.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.29	325	0	0	NA	3qF1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr3	10322996	10322996	A	G	ENSMUST00000065938.14	1	ENSMUSG00000027531	missense	V/A	122	Impa1	ENSMUST00000065938.14:c.365T>C	ENSMUSP00000068174.8:p.Val122Ala	H-2-Kb	8	8	4	FGIAYSCV	FGIVYSCV	SMMPMBEC	438.268	372.169	0.849	252	0.02	446.788	401.219	0.898	542.37	813.64	350.2	445.1	430.2689433	448.476819	372.1688324	438.2682402	M2_p20	1.5	1.5	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.031	252	0	0	NA	3qA1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.144500645	sgMsh2	cell line
chr3	68927791	68927791	A	G	ENSMUST00000107812.7	5	ENSMUSG00000027778	missense	I/T	439	Ift80	ENSMUST00000107812.7:c.1316T>C	ENSMUSP00000103442.1:p.Ile439Thr	H-2-Kb	8	11	1	TIFLFEAS	IIFLFEAS	SMM	114.483	40.902	0.357	173	0.15	496.639	214.122	0.431	378.83	1363.31	368.3	827.8	40.90157201	114.482736	59.94321055	165.4778997	M2_p20	1.628571429	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.173	173	0	0	NA	3qE1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.806406827	sgMsh2	cell line
chr3	89266743	89266743	T	G	ENSMUST00000107462.7	3	ENSMUSG00000042737	missense	L/V	4	Dpm3	ENSMUST00000107462.7:c.10T>G	ENSMUSP00000103086.1:p.Leu4Val	H-2-Kb	8	4	1	VTQWLWGL	LTQWLWGL	SMM	283.622	1434.63	5.058	77	0.286	404.513	1559.675	3.856	6651.54	1488.78	1453.1	408.4	1434.630303	283.6220554	1666.249377	400.6268017	M2_p20	0.171428571	0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.295	77	0	0	NA	3qF1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr2	153891986	153891986	A	C	ENSMUST00000028983.2	1	ENSMUSG00000027481	missense	K/T	416	Bpifb2	ENSMUST00000028983.2:c.1247A>C	ENSMUSP00000028983.2:p.Lys416Thr	H-2-Kb	9	5	7	ISTVFQTPL	ISTVFQKPL	NetMHC	11.41	25.07	2.197	59	0.542	66.044	117.373	1.777	25.07	11.41	47.2	19.6	187.5469475	112.4889855	227.6407459	133.122051	M2_p20	0.614285714	0.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.479	59	0	0	NA	2qH1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr3	83068264	83068264	A	G	ENSMUST00000150268.7	1	ENSMUSG00000027998	missense	I/M	280	Plrg1	ENSMUST00000150268.7:c.840A>G	ENSMUSP00000114968.1:p.Ile280Met	H-2-Kb	9	10	2	VMRHYHGHL	VIRHYHGHL	NetMHC	14.65	14.22	0.971	391	0.207	43.845	90.175	2.057	14.22	14.65	92.6	69.1	101.4168226	45.30123063	87.75058087	42.38869047	M2_p20	-1.714285714	-0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.209	391	0	0	NA	3qE3	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.974214028	sgMsh2	cell line
chr2	172454295	172454295	T	C	ENSMUST00000099060.1	1	ENSMUSG00000074569	missense	H/R	203	Gcnt7	ENSMUST00000099060.1:c.608A>G	ENSMUSP00000096659.1:p.His203Arg	H-2-Kb	9	8	4	FQWRYVMNL	FQWHYVMNL	NetMHC	44.73	91.86	2.054	141	0.078	378.766	352.119	0.93	91.86	44.73	121.8	74.8	680.9418088	764.0292757	582.4383998	682.7315929	M2_p20	-0.042857143	-0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.084	141	0	0	NA	2qH3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.391550136	sgMsh2	cell line
chr2	180583499	180583499	A	G	ENSMUST00000029085.8	1	ENSMUSG00000027569	missense	T/A	83	Mrgbp	ENSMUST00000029085.8:c.247A>G	ENSMUSP00000029085.8:p.Thr83Ala	H-2-Kb	9	4	8	VIWDHLSAM	VIWDHLSTM	NetMHCpan	73.8	57.5	0.779	89	0.393	77.793	86.56	1.113	88.57	75.95	57.5	73.8	84.54929682	79.63610307	91.88613834	85.35913393	M2_p20	-0.128571429	0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.419	89	0	0	NA	2qH4	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr3	90269041	90269041	T	G	ENSMUST00000098914.9	1	ENSMUSG00000042404	missense	S/A	243	Dennd4b	ENSMUST00000098914.9:c.727T>G	ENSMUSP00000096514.3:p.Ser243Ala	H-2-Kb	9	11	1	AVPVFCLPM	SVPVFCLPM	NetMHCpan	96	50.2	0.523	104	0.269	191.94	116.108	0.605	41.19	101.97	50.2	96	182.0161819	281.9096874	271.1752193	370.8941642	M2_p20	1.714285714	2.528571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.277	104	0	0	NA	3qF1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr3	35806800	35806800	T	G	ENSMUST00000029257.14	1	ENSMUSG00000037400	missense	F/L	345	Atp11b	ENSMUST00000029257.14:c.1035T>G	ENSMUSP00000029257.8:p.Phe345Leu	H-2-Kb	9	4	8	FISDFLALL	FISDFLAFL	NetMHC	173.52	338.37	1.95	117	0.316	328.18	492.209	1.5	338.37	173.52	338.6	303.9	645.8177839	352.4601324	708.3534281	425.8434778	M2_p20	1.671428571	1.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.318	117	0	0	NA	3qB	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr3	68927791	68927791	A	G	ENSMUST00000107812.7	5	ENSMUSG00000027778	missense	I/T	439	Ift80	ENSMUST00000107812.7:c.1316T>C	ENSMUSP00000103442.1:p.Ile439Thr	H-2-Kb	9	11	1	TIFLFEAST	IIFLFEAST	NetMHC	181.4	78.59	0.433	173	0.15	236.705	140.504	0.594	78.59	181.4	219.4	418.7	139.6722084	239.3922023	141.3350901	234.0183969	M2_p20	0.885714286	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.173	173	0	0	NA	3qE1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.806406827	sgMsh2	cell line
chr3	80860236	80860236	AT	A	ENSMUST00000029654.14	1	ENSMUSG00000028020	FS	I/X	226	Glrb	ENSMUST00000029654.14:c.676del	ENSMUSP00000029654.8:p.Ile226LeufsTer37	H-2-Kb	9	6	6	VQLEKLLYL	VQLEKIALP	NetMHC	204.77	13999.81	68.368	156	0.391	281.513	8030.813	28.527	13999.81	204.77	16761.3	288.8	1256.348137	274.2268658	2061.816449	309.2074862	M2_p20	0.928571429	0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.392	156	0	0	NA	3qE3	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr3	100065527	100065527	C	T	ENSMUST00000164539.1	5	ENSMUSG00000027867	missense	H/Y	1352	Spag17	ENSMUST00000164539.1:c.4054C>T	ENSMUSP00000134066.1:p.His1352Tyr	H-2-Db	9	8	4	TSPYNGDLV	TSPHNGDLV	NetMHC	93.78	117.07	1.248	214	0.15	273.366	321.356	1.176	117.07	93.78	274.1	166	393.2058767	380.7325434	368.6124504	395.885869	M2_p20	-0.328571429	-0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.15	214	0	0	NA	3qF2.2	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.699196671	sgMsh2	cell line
chr3	98314260	98314260	A	G	ENSMUST00000065793.11	1	ENSMUSG00000053398	missense	V/A	452	Phgdh	ENSMUST00000065793.11:c.1355T>C	ENSMUSP00000064755.5:p.Val452Ala	H-2-Db	9	4	8	LQMLNGAAF	LQMLNGAVF	SMM	374.645	454.59	1.213	58	0.224	390.306	353.221	0.905	280.5	438.21	295.7	396.4	454.5901278	374.645051	410.7428385	384.2111817	M2_p20	1.171428571	1.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	58	0	0	NA	3qF2.2	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.932262228	sgMsh2	cell line
chr3	155137385	155137385	AT	A	ENSMUST00000194376.1	1	ENSMUSG00000028182	FS	N/X	298	Lrriq3	ENSMUST00000194376.1:c.897del	ENSMUSP00000142127.1:p.His300ThrfsTer32	H-2-Db	9	7	7	KLWVNFTEV	NA	SMMPMBEC	272.001	NA	NA	339	0.357	443.324	NA	NA	NA	666.64	NA	596.5	NA	290.1482797	NA	272.0006864	M2_p20	0.371428571	0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.351	339	0	0	NA	3qH4	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr4	34575043	34575043	A	G	ENSMUST00000048706.9	1	ENSMUSG00000040044	missense	Y/H	615	Orc3	ENSMUST00000048706.9:c.1843T>C	ENSMUSP00000048319.3:p.Tyr615His	H-2-Db	10	4	8	TALNNPYHYL	TALNNPYYYL	NetMHC	25.9	21.53	0.831	125	0.312	397.274	368.079	0.927	21.53	25.9	32	34.8	869.4607871	920.9795777	704.1578092	759.7487601	M2_p20	-1.514285714	-0.714285714	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.325	125	0	0	NA	4qA5	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr3	105005546	105005546	C	A	ENSMUST00000077548.11	1	ENSMUSG00000062127	missense	A/S	341	Cttnbp2nl	ENSMUST00000077548.11:c.1021G>T	ENSMUSP00000076751.5:p.Ala341Ser	H-2-Kb	8	11	1	SAYSYAKA	AAYSYAKA	NetMHC	11.09	24.13	2.176	131	0.237	44.921	75.024	1.67	24.13	11.09	53.5	32.2	129.0446488	68.82401428	96.54727043	57.64212727	M2_p20	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.244	131	0	0	NA	3qF2.2	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr3	96643594	96643594	A	G	ENSMUST00000118557.7	1	ENSMUSG00000028102	missense	I/V	132	Pex11b	ENSMUST00000118557.7:c.394A>G	ENSMUSP00000113365.1:p.Ile132Val	H-2-Kb	8	4	8	RYYLFSLV	RYYLFSLI	NetMHC	32.09	57.84	1.802	354	0.415	74.302	110.092	1.482	57.84	32.09	58.1	52.5	174.4777291	96.10367602	162.0839455	102.2680559	M2_p20	1.6	1.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.391	354	0	0	NA	3qF2.1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr3	108624645	108624645	A	G	ENSMUST00000051145.14	1	ENSMUSG00000040389	missense	Q/R	449	Wdr47	ENSMUST00000051145.14:c.1346A>G	ENSMUSP00000057482.8:p.Gln449Arg	H-2-Kb	8	11	1	RMYQQMLL	QMYQQMLL	NetMHC	67.4	94.29	1.399	172	0.18	121.812	213.148	1.75	94.29	67.4	182.1	93.4	244.1968177	150.2242346	524.4933667	251.0383085	M2_p20	0.442857143	0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.196	172	0	0	NA	3qF3	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.913616983	sgMsh2	cell line
chr3	105978389	105978389	T	G	ENSMUST00000000573.8	1	ENSMUSG00000074340	missense	L/R	200	Ovgp1	ENSMUST00000000573.8:c.599T>G	ENSMUSP00000000573.2:p.Leu200Arg	H-2-Kb	8	5	7	TSYDALRL	TSYDALLL	NetMHCpan	51.2	92.7	1.811	179	0.251	65.195	129.261	1.983	119.93	68.34	92.7	51.2	138.5925865	62.04974485	172.480499	72.90209351	M2_p20	-0.1	-0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.259	179	0	0	NA	3qF2.2	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr3	102941057	102941057	A	C	ENSMUST00000058899.12	1	ENSMUSG00000048938	missense	L/R	444	Nr1h5	ENSMUST00000058899.12:c.1331T>G	ENSMUSP00000052557.8:p.Leu444Arg	H-2-Kb	8	11	1	RLFKFSKM	LLFKFSKM	NetMHCpan	23.7	24.4	1.03	213	0.052	133.987	135.259	1.009	94.02	95.89	24.4	23.7	262.8693795	220.1608027	176.4980859	172.0838049	M2_p20	0.385714286	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.056	213	0	0	NA	3qF2.2	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.261033424	sgMsh2	cell line
chr3	108393194	108393194	A	G	ENSMUST00000090558.9	1	ENSMUSG00000068740	missense	L/P	2850	Celsr2	ENSMUST00000090558.9:c.8549T>C	ENSMUSP00000088046.3:p.Leu2850Pro	H-2-Kb	8	8	4	SSLPRLPL	SSLLRLPL	NetMHCpan	150	78.5	0.523	36	0.222	229.897	117.902	0.513	57.65	157.98	78.5	150	158.3944645	301.8144301	157.3040847	361.1935614	M2_p20	0.414285714	0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	36	0	0	NA	3qF3	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr4	4058878	4058878	A	G	ENSMUST00000108383.1	1	ENSMUSG00000071019	missense	L/P	236	Sdr16c6	ENSMUST00000108383.1:c.707T>C	ENSMUSP00000104020.1:p.Leu236Pro	H-2-Kb	8	5	7	CTTKYPPL	CTTKYPLL	SMM	145.459	385.248	2.649	180	0.478	173.345	480.172	2.77	600.95	166.39	368.7	180.3	385.2476516	145.4587999	575.0955406	208.8045702	M2_p20	-0.857142857	-0.857142857	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.473	180	0	0	NA	4qA1	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr3	146584619	146584619	A	C	ENSMUST00000200633.1	1	ENSMUSG00000028185	missense	L/R	199	Dnase2b	ENSMUST00000200633.1:c.596T>G	ENSMUSP00000142872.1:p.Leu199Arg	H-2-Kb	8	5	7	STFHWKRI	STFHWKLI	SMMPMBEC	144.457	341.775	2.366	181	0.238	192.819	354.532	1.839	367.29	243.23	186.2	161.9	499.7352678	223.738128	341.7747702	144.4574685	M2_p20	-0.842857143	-0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.254	181	0	0	NA	3qH2	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr4	20064005	20064005	A	C	ENSMUST00000098242.3	1	ENSMUSG00000073987	missense	K/T	234	Ggh	ENSMUST00000098242.3:c.701A>C	ENSMUSP00000095843.3:p.Lys234Thr	H-2-Kb	8	10	2	FTYPVYAV	FKYPVYAV	SMM	232.135	1272.741	5.483	203	0.384	311.21	3820.621	12.277	5414.14	319.82	5562.8	302.6	1272.740898	232.1346655	2227.101447	387.9180607	M2_p20	0.757142857	0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.382	203	0	0	NA	4qA3	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr4	34806979	34806979	CT	C	ENSMUST00000047950.5	1	ENSMUSG00000039967	FS	S/X	2027	Zfp292	ENSMUST00000047950.5:c.6079del	ENSMUSP00000037233.5:p.Ser2027ValfsTer26	H-2-Kb	8	17	0	VLHSLSHL	NA	NetMHCpan	193.4	NA	NA	84	0.369	398.961	NA	NA	NA	443.32	NA	193.4	NA	444.3651588	NA	354.6010359	M2_p20	0.485714286	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.383	84	0	0	NA	4qA5	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr4	22390800	22390800	T	C	ENSMUST00000039234.9	1	ENSMUSG00000040410	missense	Y/H	328	Fbxl4	ENSMUST00000039234.9:c.982T>C	ENSMUSP00000042219.3:p.Tyr328His	H-2-Kb	8	8	4	LQPHWARL	LQPYWARL	SMMPMBEC	297.673	314.586	1.057	68	0.265	471.022	266.443	0.566	169.3	539.6	218.3	520.6	424.3654321	421.444121	314.5864409	297.6733808	M2_p20	-1.157142857	-1.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.271	68	0	0	NA	4qA3	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr3	122014355	122014355	C	A	ENSMUST00000037958.13	1	ENSMUSG00000039831	missense	P/T	1061	Arhgap29	ENSMUST00000037958.13:c.3181C>A	ENSMUSP00000044624.7:p.Pro1061Thr	H-2-Kb	8	9	3	KNTAFEGL	KNPAFEGL	SMM	324.893	206.89	0.637	224	0.188	433.195	218.845	0.505	136.38	546.75	230.8	443	206.8902384	324.8927349	275.2580317	423.3894187	M2_p20	0.042857143	0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.193	224	0	0	NA	3qG1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.89963305	sgMsh2	cell line
chr4	34575043	34575043	A	G	ENSMUST00000048706.9	1	ENSMUSG00000040044	missense	Y/H	615	Orc3	ENSMUST00000048706.9:c.1843T>C	ENSMUSP00000048319.3:p.Tyr615His	H-2-Kb	8	6	6	LNNPYHYL	LNNPYYYL	NetMHCpan	160.1	100.7	0.629	125	0.312	194.772	144.784	0.743	231.5	628.08	100.7	160.1	124.0909187	170.8991883	165.4778997	218.6452264	M2_p20	-1.514285714	-1.514285714	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.325	125	0	0	NA	4qA5	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr3	109166455	109166455	T	C	ENSMUST00000029477.10	1	ENSMUSG00000040322	missense	I/T	458	Slc25a24	ENSMUST00000029477.10:c.1373T>C	ENSMUSP00000029477.6:p.Ile458Thr	H-2-Kb	9	11	1	TSYVVYENM	ISYVVYENM	NetMHC	9.91	5.21	0.526	158	0.152	51.291	29.923	0.583	5.21	9.91	8.9	18.2	50.94598929	87.31925064	50.96241499	84.382036	M2_p20	0.1	0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.187	158	0	0	NA	3qF3	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.871665183	sgMsh2	cell line
chr3	98314260	98314260	A	G	ENSMUST00000065793.11	1	ENSMUSG00000053398	missense	V/A	452	Phgdh	ENSMUST00000065793.11:c.1355T>C	ENSMUSP00000064755.5:p.Val452Ala	H-2-Kb	9	10	2	AAFRPEVPL	AVFRPEVPL	NetMHC	158.48	183.24	1.156	58	0.224	273.902	281.905	1.029	183.24	158.48	280.6	301.1	283.2109234	251.8314697	342.1763584	295.9715726	M2_p20	-0.057142857	0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	58	0	0	NA	3qF2.2	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.932262228	sgMsh2	cell line
chr3	157312902	157312902	C	T	ENSMUST00000074015.10	1	ENSMUSG00000040037	missense	L/F	347	Negr1	ENSMUST00000074015.10:c.1039C>T	ENSMUSP00000073664.4:p.Leu347Phe	H-2-Kb	9	12	9	IFYLKNAIF	IFYLKNAIL	SMM	146.592	86.918	0.593	153	0.327	161.23	88.179	0.547	89.44	172.75	131.7	353.4	86.91805512	146.5919088	86.54659777	149.7097207	M2_p20	0.6	0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.327	153	0	0	NA	3qH4	chr3-155163725-159913826	4	3	1	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr3	95008482	95008482	T	C	ENSMUST00000019482.7	1	ENSMUSG00000019338	missense	K/R	993	Zfp687	ENSMUST00000019482.7:c.2978A>G	ENSMUSP00000019482.1:p.Lys993Arg	H-2-Kb	9	8	4	SVKRFPCRL	SVKKFPCRL	NetMHCpan	181.6	255.5	1.407	82	0.354	436.752	462.473	1.059	295.28	204.99	255.5	181.6	629.6656471	668.5132201	679.5947262	729.8775406	M2_p20	-0.771428571	-0.185714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.357	82	0	0	NA	3qF2.1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr3	96643594	96643594	A	G	ENSMUST00000118557.7	1	ENSMUSG00000028102	missense	I/V	132	Pex11b	ENSMUST00000118557.7:c.394A>G	ENSMUSP00000113365.1:p.Ile132Val	H-2-Kb	9	3	9	FRYYLFSLV	FRYYLFSLI	SMM	194.585	214.837	1.104	354	0.415	261.413	302.7	1.158	325.34	251.65	707.7	859.5	214.8374555	194.5852873	280.0593007	271.1752193	M2_p20	1.6	1.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.391	354	0	0	NA	3qF2.1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr3	155137385	155137385	AT	A	ENSMUST00000194376.1	1	ENSMUSG00000028182	FS	N/X	298	Lrriq3	ENSMUST00000194376.1:c.897del	ENSMUSP00000142127.1:p.His300ThrfsTer32	H-2-Kb	9	21	0	LTFHQYKGI	NA	NetMHCpan	249.3	NA	NA	339	0.357	334.616	NA	NA	NA	317.47	NA	249.3	NA	377.6678362	NA	351.7628732	M2_p20	-0.714285714	-0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.351	339	0	0	NA	3qH4	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr3	90388429	90388429	T	C	ENSMUST00000029541.11	1	ENSMUSG00000027932	missense	Y/C	296	Slc27a3	ENSMUST00000029541.11:c.887A>G	ENSMUSP00000029541.5:p.Tyr296Cys	H-2-Kb	9	8	4	QGFCHLCGV	QGFYHLCGV	NetMHC	342.9	186.67	0.544	203	0.365	465.899	260.475	0.559	186.67	342.9	177.6	469.3	334.2796971	462.4981501	485.5679351	609.8878759	M2_p20	1.742857143	1.742857143	TRUE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.373	203	0	0	NA	3qF1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr3	135455359	135455359	A	T	ENSMUST00000197859.4	1	ENSMUSG00000078578	missense	Q/H	34	Ube2d3	ENSMUST00000197859.4:c.102A>T	ENSMUSP00000143608.1:p.Gln34His	H-2-Kb	9	6	6	DMFHWHATI	DMFHWQATI	SMM	306.274	472.183	1.542	238	0.13	344.065	621.276	1.806	662.79	379.99	851.1	360.6	472.1826226	306.2739079	579.7623384	327.5291816	M2_p20	0.157142857	0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.145	238	0	0	NA	3qG3	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.675890115	sgMsh2	cell line
chr3	96643594	96643594	A	G	ENSMUST00000118557.7	1	ENSMUSG00000028102	missense	I/V	132	Pex11b	ENSMUST00000118557.7:c.394A>G	ENSMUSP00000113365.1:p.Ile132Val	H-2-Kb	9	4	8	RYYLFSLVM	RYYLFSLIM	SMM	162.596	136.808	0.841	354	0.415	253.306	275.956	1.089	409.63	453.24	300	261	136.8075294	162.5960534	251.9126636	245.6122367	M2_p20	2.057142857	2.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.391	354	0	0	NA	3qF2.1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr3	155137385	155137385	AT	A	ENSMUST00000194376.1	1	ENSMUSG00000028182	FS	N/X	298	Lrriq3	ENSMUST00000194376.1:c.897del	ENSMUSP00000142127.1:p.His300ThrfsTer32	H-2-Kb	9	10	4	VNFTEVGWM	NA	SMMPMBEC	346.937	NA	NA	339	0.357	357.03	NA	NA	NA	962.72	NA	361.6	NA	352.4601324	NA	346.9365057	M2_p20	0.485714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.351	339	0	0	NA	3qH4	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr4	136554214	136554214	T	A	ENSMUST00000105847.7	5	ENSMUSG00000036940	missense	K/M	682	Kdm1a	ENSMUST00000105847.7:c.2045A>T	ENSMUSP00000101473.1:p.Lys682Met	H-2-Db	9	6	6	FGNLNMVVL	FGNLNKVVL	NetMHC	15.68	50.61	3.228	110	0.273	76.126	173.018	2.273	50.61	15.68	144.4	54.4	281.5917975	138.8736979	201.6368945	97.8520661	M2_p20	1.557142857	1.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.264	110	0	0	NA	4qD3	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr4	45307923	45307923	CT	C	ENSMUST00000044673.8	1	ENSMUSG00000035601	FS	L/X	203	Trmt10b	ENSMUST00000044673.8:c.612del	ENSMUSP00000041052.2:p.Pro205LeufsTer8	H-2-Db	9	9	5	FSLFLWKPL	FSLFPLETL	SMM	212.628	545.281	2.564	294	0.337	281.074	540.89	1.924	345.62	310.63	884.2	463.6	545.2805415	212.6277776	536.5003381	251.518538	M2_p20	1.114285714	1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.326	294	0	0	NA	4qB1	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr4	143852045	143852045	T	C	ENSMUST00000094522.7	1	ENSMUSG00000029451	missense	Y/H	292	Gm13103	ENSMUST00000094522.7:c.874T>C	ENSMUSP00000092099.1:p.Tyr292His	H-2-Kb	8	10	2	VHFIYGNL	VYFIYGNL	NetMHC	3.16	4.69	1.484	295	0.342	3.563	5.432	1.525	4.69	3.16	10.7	9.6	5.257024488	3.263923717	5.607121928	3.861357391	M2_p20	0.385714286	0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.352	295	0	0	NA	4qE1	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr4	135967358	135967358	CA	C	ENSMUST00000102540.1	1	ENSMUSG00000028671	FS	N/X	267	Gale	ENSMUST00000102540.1:c.800del	ENSMUSP00000099599.1:p.Asn267ThrfsTer166	H-2-Kb	8	144	0	KSRSFQPV	NA	NetMHC	34.63	NA	NA	77	0.338	97.887	NA	NA	NA	34.63	NA	181.8	NA	87.44601036	NA	108.3278191	M2_p20	-0.6	-0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.351	77	0	0	NA	4qD3	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr4	45307923	45307923	CT	C	ENSMUST00000044673.8	1	ENSMUSG00000035601	FS	L/X	203	Trmt10b	ENSMUST00000044673.8:c.612del	ENSMUSP00000041052.2:p.Pro205LeufsTer8	H-2-Kb	8	10	4	SLFLWKPL	SLFPLETL	NetMHCpan	45.9	278.7	6.072	294	0.337	65.889	861.472	13.075	1564.85	78.53	278.7	45.9	803.0452175	78.47656766	919.8986892	53.30156983	M2_p20	1.114285714	1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.326	294	0	0	NA	4qB1	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr4	139640665	139640665	A	G	ENSMUST00000039818.9	1	ENSMUSG00000028737	missense	T/A	306	Aldh4a1	ENSMUST00000039818.9:c.916A>G	ENSMUSP00000043821.9:p.Thr306Ala	H-2-Kb	8	8	4	RFRAFPRL	RFRTFPRL	SMM	54.293	53.179	0.979	54	0.407	87.052	74.246	0.853	78.71	97.59	160.4	151.2	53.17897962	54.29252	69.78145169	76.51384027	M2_p20	0.085714286	0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.441	54	0	0	NA	4qD3	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr4	135967358	135967358	CA	C	ENSMUST00000102540.1	1	ENSMUSG00000028671	FS	N/X	267	Gale	ENSMUST00000102540.1:c.800del	ENSMUSP00000099599.1:p.Asn267ThrfsTer166	H-2-Kb	8	8	4	RTYTWARA	NA	SMMPMBEC	100.401	NA	NA	77	0.338	137.447	NA	NA	NA	124.67	NA	279.1	NA	150.2242346	NA	100.4014535	M2_p20	-0.642857143	-0.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.351	77	0	0	NA	4qD3	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr4	115068554	115068554	TC	T	ENSMUST00000030489.8	1	ENSMUSG00000028717	FS	I/X	273	Tal1	ENSMUST00000030489.8:c.824del	ENSMUSP00000030489.2:p.Pro275LeufsTer82	H-2-Kb	8	77	0	QAGAFRPL	NA	NetMHC	137.79	NA	NA	21	0.333	228.578	NA	NA	NA	137.79	NA	588.8	NA	207.8452003	NA	249.310173	M2_p20	0.528571429	0.528571429	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.405	21	0	0	NA	4qD1	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr4	120886945	120886945	C	T	ENSMUST00000071093.8	1	ENSMUSG00000032890	missense	P/L	124	Rims3	ENSMUST00000071093.8:c.371C>T	ENSMUSP00000068178.2:p.Pro124Leu	H-2-Kb	8	7	5	TFIFLTRL	TFIFPTRL	NetMHCpan	49.6	106	2.137	79	0.241	194.02	549.467	2.832	531.73	162.75	106	49.6	567.204934	225.2890066	685.0779666	240.8463117	M2_p20	1.785714286	1.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.255	79	0	0	NA	4qD2.2	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr4	120098410	120098410	A	G	ENSMUST00000106307.8	1	ENSMUSG00000028634	missense	T/A	1308	Hivep3	ENSMUST00000106307.8:c.3922A>G	ENSMUSP00000101914.2:p.Thr1308Ala	H-2-Kb	8	5	7	GSAMYTAL	GSAMYTTL	SMMPMBEC	189.557	298.36	1.574	123	0.195	228.015	360.875	1.583	518.24	263.52	198	201.5	423.3894187	254.5305993	298.3595888	189.5570756	M2_p20	0.928571429	0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.197	123	0	0	NA	4qD2.1	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	0.918278294	sgMsh2	cell line
chr4	118830156	118830156	A	T	ENSMUST00000076019.3	NA	ENSMUSG00000110947	missense	F/I	95	Olfr1333	ENSMUST00000076019.3:c.283T>A	ENSMUSP00000075398.2:p.Phe95Ile	H-2-Kb	8	9	3	ISIASCCL	ISFASCCL	SMM	254.531	52.449	0.206	358	0.223	405.102	64.499	0.159	71.09	535.58	88.3	738.3	52.44933667	254.5305993	57.90819124	274.6249558	M2_p20	1.928571429	2.028571429	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.216	358	0	0	NA	4qD2.1	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr4	53083890	53083890	A	G	ENSMUST00000030010.3	1	ENSMUSG00000015243	missense	W/R	648	Abca1	ENSMUST00000030010.3:c.1942T>C	ENSMUSP00000030010.3:p.Trp648Arg	H-2-Kb	8	11	1	RIYSVAVI	WIYSVAVI	SMM	334.765	451.586	1.349	59	0.322	400.859	795.858	1.985	1140.13	619.27	1407.1	446.3	451.5855118	334.7649647	409.0157201	355.4184757	M2_p20	2.442857143	2.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.315	59	0	0	NA	4qB2	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr4	135967358	135967358	CA	C	ENSMUST00000102540.1	1	ENSMUSG00000028671	FS	N/X	267	Gale	ENSMUST00000102540.1:c.800del	ENSMUSP00000099599.1:p.Asn267ThrfsTer166	H-2-Kb	8	80	0	RSRTLRAL	NA	SMM	258.071	NA	NA	77	0.338	481.128	NA	NA	NA	638.11	NA	2643.8	NA	258.0714726	NA	324.1455024	M2_p20	-0.157142857	-0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.351	77	0	0	NA	4qD3	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr4	143895385	143895385	T	C	ENSMUST00000105767.1	5	ENSMUSG00000078512	missense	I/V	467	Pramef6	ENSMUST00000105767.1:c.1399A>G	ENSMUSP00000101393.1:p.Ile467Val	H-2-Kb	9	13	2	CVYSFVGNI	CIYSFVGNI	NetMHC	23.45	22.06	0.941	259	0.282	90.759	96.799	1.067	22.06	23.45	42.9	35.6	150.6988715	145.9183802	252.4933823	247.8848587	M2_p20	0.785714286	1.6	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.304	259	0	0	NA	4qE1	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr4	124942369	124942369	T	C	ENSMUST00000094769.12	1	ENSMUSG00000044730	missense	Y/H	158	9930104L06Rik	ENSMUST00000094769.12:c.472T>C	ENSMUSP00000154851.1:p.Tyr158His	H-2-Kb	9	4	8	SSYLKRKHL	SSYLKRKYL	NetMHC	33.01	28.82	0.873	103	0.301	69.015	66.097	0.958	28.82	33.01	64.1	72.7	68.09418088	65.32960014	84.382036	77.13473645	M2_p20	-1.314285714	-1.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.314	103	0	0	NA	4qD2.2	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr4	120886945	120886945	C	T	ENSMUST00000071093.8	1	ENSMUSG00000032890	missense	P/L	124	Rims3	ENSMUST00000071093.8:c.371C>T	ENSMUSP00000068178.2:p.Pro124Leu	H-2-Kb	9	6	6	GTFIFLTRL	GTFIFPTRL	NetMHCpan	28.1	39.6	1.409	79	0.241	60.436	144.364	2.389	86.31	36.1	39.6	28.1	215.332707	91.43448014	202.4184057	84.77152578	M2_p20	1.785714286	1.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.255	79	0	0	NA	4qD2.2	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr4	120098410	120098410	A	G	ENSMUST00000106307.8	1	ENSMUSG00000028634	missense	T/A	1308	Hivep3	ENSMUST00000106307.8:c.3922A>G	ENSMUSP00000101914.2:p.Thr1308Ala	H-2-Kb	9	7	5	AMYTALSQI	AMYTTLSQI	NetMHCpan	150	218.9	1.459	123	0.195	172.409	166.723	0.967	120.29	152.46	218.9	150	160.3651519	192.357888	173.0812408	193.7536979	M2_p20	0.542857143	0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.197	123	0	0	NA	4qD2.1	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	0.918278294	sgMsh2	cell line
chr4	45307923	45307923	CT	C	ENSMUST00000044673.8	1	ENSMUSG00000035601	FS	L/X	203	Trmt10b	ENSMUST00000044673.8:c.612del	ENSMUSP00000041052.2:p.Pro205LeufsTer8	H-2-Kb	9	9	5	FSLFLWKPL	FSLFPLETL	NetMHCpan	127.2	1483.2	11.66	294	0.337	215.539	984.497	4.568	761.94	209.13	1483.2	127.2	889.4263671	253.577082	1079.567993	221.9473684	M2_p20	1.114285714	1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.326	294	0	0	NA	4qB1	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr4	143895385	143895385	T	C	ENSMUST00000105767.1	5	ENSMUSG00000078512	missense	I/V	467	Pramef6	ENSMUST00000105767.1:c.1399A>G	ENSMUSP00000101393.1:p.Ile467Val	H-2-Kb	9	10	5	RNFCVYSFV	RNFCIYSFV	NetMHCpan	85.7	73	0.852	259	0.282	357.494	308.946	0.864	234.97	248.06	73	85.7	382.9217191	472.1826226	388.3738676	466.9280884	M2_p20	2.057142857	2.057142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.304	259	0	0	NA	4qE1	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr4	139640665	139640665	A	G	ENSMUST00000039818.9	1	ENSMUSG00000028737	missense	T/A	306	Aldh4a1	ENSMUST00000039818.9:c.916A>G	ENSMUSP00000043821.9:p.Thr306Ala	H-2-Kb	9	4	8	QNLDRFRAF	QNLDRFRTF	SMM	226.001	239.944	1.062	54	0.407	312.457	354.948	1.136	385.37	323.44	1098.6	1301.5	239.9440583	226.0008122	324.526376	301.4740949	M2_p20	-0.185714286	-0.185714286	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.441	54	0	0	NA	4qD3	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr4	117044583	117044583	GA	G	ENSMUST00000106448.8	5	ENSMUSG00000028683	FS	K/X	148	Eif2b3	ENSMUST00000106448.8:c.450del	ENSMUSP00000102056.2:p.Lys150AsnfsTer58	H-2-Kb	9	54	0	LGYISTQAL	NA	NetMHCpan	237.6	NA	NA	107	0.28	484.339	NA	NA	NA	380.85	NA	237.6	NA	638.4251688	NA	587.8276359	M2_p20	0.542857143	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.316	107	0	0	NA	4qD1	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr4	96228636	96228636	A	C	ENSMUST00000162514.2	5	ENSMUSG00000081362	missense	L/V	152	Cyp2j7	ENSMUST00000162514.2:c.454T>G	ENSMUSP00000134331.1:p.Leu152Val	H-2-Kb	9	3	9	LMILKSFGV	LMILKSFGL	SMM	322.188	143.255	0.445	239	0.293	476.336	217.841	0.457	215.77	460.35	438.9	2136.3	143.2550696	322.1884741	219.9125427	492.3228579	M2_p20	1.457142857	1.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.291	239	0	0	NA	4qC5	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr5	76621329	76621329	A	G	ENSMUST00000121979.7	5	ENSMUSG00000036403	missense	T/A	609	Cep135	ENSMUST00000121979.7:c.1825A>G	ENSMUSP00000112602.1:p.Thr609Ala	H-2-Db	9	10	2	KAIEHLTYI	KTIEHLTYI	NetMHC	21.41	245.38	11.461	160	0.706	69.72	435.687	6.249	245.38	21.41	243.2	29.9	768.4577591	118.2006868	625.9937541	109.5393098	M2_p20	0.585714286	0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.695	160	0	0	NA	5qC3.3	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	3	1	sgMsh2	cell line
chr5	34848948	34848948	T	A	ENSMUST00000080036.2	1	ENSMUSG00000029104	missense	H/Q	1400	Htt	ENSMUST00000080036.2:c.4200T>A	ENSMUSP00000078945.2:p.His1400Gln	H-2-Db	9	8	4	NAIQNHIRL	NAIHNHIRL	NetMHCpan	42.5	130.5	3.071	269	0.186	128.892	250.646	1.945	219.7	50.95	130.5	42.5	281.5917975	206.8330804	333.8643134	252.6794949	M2_p20	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.192	269	0	0	NA	5qB2	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	1	0.894971739	sgMsh2	cell line
chr4	155268251	155268251	T	G	ENSMUST00000030922.14	1	ENSMUSG00000029053	missense	K/T	473	Prkcz	ENSMUST00000030922.14:c.1418A>C	ENSMUSP00000030922.7:p.Lys473Thr	H-2-Db	9	5	7	FQVILETPI	FQVILEKPI	NetMHC	96.91	1744.74	18.004	155	0.297	220.135	1380.05	6.269	1744.74	96.91	2345.3	278.3	1015.359882	224.7087583	992.1332393	215.5609059	M2_p20	1.6	1.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.324	155	0	0	NA	4qE2	chr4-147681972-156223608	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr5	57721359	57721359	T	C	ENSMUST00000191837.5	1	ENSMUSG00000029108	missense	L/S	752	Pcdh7	ENSMUST00000191837.5:c.2255T>C	ENSMUSP00000142319.1:p.Leu752Ser	H-2-Kb	8	5	7	RNISYTSL	RNISYTLL	NetMHC	17.31	17.09	0.987	305	0.243	37.571	44.968	1.197	17.09	17.31	18.2	19.2	71.73646964	55.94225905	78.83879904	59.94321055	M2_p20	0.171428571	0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.239	305	0	0	NA	5qC1	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr4	155966486	155966486	T	C	ENSMUST00000024338.4	1	ENSMUSG00000023571	missense	M/T	304	C1qtnf12	ENSMUST00000024338.4:c.911T>C	ENSMUSP00000024338.4:p.Met304Thr	H-2-Kb	8	12	6	SSFSGTLL	SSFSGMLL	NetMHCpan	66.9	50.3	0.752	177	0.395	86.988	70.723	0.813	34.09	71	50.3	66.9	95.22259222	121.8260042	91.14650073	102.9769442	M2_p20	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.38	177	0	0	NA	4qE2	chr4-147681972-156223608	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr5	66284195	66284195	GT	G	ENSMUST00000031109.6	5	ENSMUSG00000029206	FS	S/X	402	Nsun7	ENSMUST00000031109.6:c.1208del	ENSMUSP00000031109.4:p.Leu403TyrfsTer26	H-2-Kb	8	10	3	KSYFKIFL	NA	NetMHCpan	40.1	NA	NA	105	0.638	147.864	NA	NA	NA	140.94	NA	40.1	NA	154.7889663	NA	171.2931516	M2_p20	1.128571429	1.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.63	105	0	0	NA	5qC3.1	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	3	1	sgMsh2	cell line
chr5	16359028	16359028	T	C	ENSMUST00000039370.13	1	ENSMUSG00000040118	missense	V/A	903	Cacna2d1	ENSMUST00000039370.13:c.2708T>C	ENSMUSP00000049457.7:p.Val903Ala	H-2-Kb	8	4	8	KSYDYQSA	KSYDYQSV	NetMHCpan	154.7	15.4	0.1	135	0.733	204.33	27.778	0.136	12.68	168.92	15.4	154.7	40.15503419	239.7397234	51.49202839	247.5939338	M2_p20	-1.342857143	-1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.726	135	0	0	NA	5qA3	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	3	1	sgMsh2	cell line
chr4	155069021	155069021	T	G	ENSMUST00000103180.3	1	ENSMUSG00000029047	missense	I/M	182	Pex10	ENSMUST00000103180.3:c.546T>G	ENSMUSP00000099469.3:p.Ile182Met	H-2-Kb	8	11	1	MHGTFYHL	IHGTFYHL	SMMPMBEC	155.503	71.571	0.46	106	0.34	235.779	80.872	0.343	80.51	309.1	169.9	352	81.23440428	162.4575876	71.57148034	155.5034397	M2_p20	-0.314285714	-0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.338	106	0	0	NA	4qE2	chr4-147681972-156223608	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr5	88098414	88098414	A	G	ENSMUST00000199635.4	1	ENSMUSG00000029281	missense	I/V	96	Smr2	ENSMUST00000199635.4:c.286A>G	ENSMUSP00000142444.1:p.Ile96Val	H-2-Kb	8	7	5	IIVTVPGL	IIVTIPGL	SMM	275.893	632.033	2.291	173	0.052	306.397	492.597	1.608	491.18	317.17	288.1	408.3	632.0333573	275.892567	494.0148455	295.6242117	M2_p20	2	2.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.061	173	0	0	NA	5qE1	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	1	0.28433998	sgMsh2	cell line
chr5	115470836	115470836	T	C	ENSMUST00000031495.10	1	ENSMUSG00000029522	missense	M/T	30	Pla2g1b	ENSMUST00000031495.10:c.89T>C	ENSMUSP00000031495.4:p.Met30Thr	H-2-Kb	8	4	8	AVWQFRNT	AVWQFRNM	SMMPMBEC	176.092	36.706	0.208	178	0.107	334.707	25.803	0.077	11.06	342.27	14.9	361.2	46.10414792	327.1447838	36.70624846	176.0921516	M2_p20	-0.871428571	-0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.109	178	0	0	NA	5qF	chr5-95270364-151647482	4	3	1	0.9	4.195180026	NA	1	0.508082914	sgMsh2	cell line
chr5	34848948	34848948	T	A	ENSMUST00000080036.2	1	ENSMUSG00000029104	missense	H/Q	1400	Htt	ENSMUST00000080036.2:c.4200T>A	ENSMUSP00000078945.2:p.His1400Gln	H-2-Kb	8	9	3	AIQNHIRL	AIHNHIRL	SMM	233.206	203.582	0.873	269	0.186	335.761	210.611	0.627	187.86	352.56	450.7	1017.2	203.5822922	233.2061504	217.6406428	318.9627742	M2_p20	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.192	269	0	0	NA	5qB2	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	1	0.894971739	sgMsh2	cell line
chr5	27842567	27842567	G	A	ENSMUST00000036227.6	1	ENSMUSG00000039106	missense	R/Q	40	Htr5a	ENSMUST00000036227.6:c.119G>A	ENSMUSP00000038884.5:p.Arg40Gln	H-2-Kb	8	8	4	SAFQVLVL	SAFRVLVL	SMM	148.505	125.528	0.845	117	0.726	198.269	141.235	0.712	196.42	372.6	89.1	203.9	125.5278239	148.504632	156.9422953	192.6371303	M2_p20	2.442857143	2.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.687	117	0	0	NA	5qB1	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	3	1	sgMsh2	cell line
chr5	3673162	3673162	T	C	ENSMUST00000014673.8	1	ENSMUSG00000014529	missense	I/T	231	Tmbim7	ENSMUST00000014673.8:c.692T>C	ENSMUSP00000014673.2:p.Ile231Thr	H-2-Kb	8	7	5	LIYGTIAL	LIYGIIAL	SMMPMBEC	338.641	366.218	1.081	350	0.226	379.899	400.735	1.055	501.32	404.38	344.3	444	435.2512229	355.4184757	366.2182643	338.6413603	M2_p20	1.742857143	1.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.233	350	0	0	NA	5qA1	chr5-3344373-14859185	4	3	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr5	123758488	123758488	A	G	ENSMUST00000031366.11	1	ENSMUSG00000029414	missense	N/D	138	Kntc1	ENSMUST00000031366.11:c.412A>G	ENSMUSP00000031366.7:p.Asn138Asp	H-2-Kb	8	5	7	SQRTYRDL	SQRTYRNL	SMM	239.74	37.217	0.155	219	0.685	352.064	42.914	0.122	25.66	412.56	218.3	1756.2	37.21688324	239.7397234	48.61160944	291.5680954	M2_p20	-2.028571429	-2.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.707	219	0	0	NA	5qF	chr5-95270364-151647482	4	3	1	0.9	4.195180026	NA	3	1	sgMsh2	cell line
chr5	31251970	31251970	T	C	ENSMUST00000054829.12	1	ENSMUSG00000029149	missense	L/P	27	Krtcap3	ENSMUST00000054829.12:c.80T>C	ENSMUSP00000060414.7:p.Leu27Pro	H-2-Kb	8	5	7	VGLALIPV	VGLALILV	SMM	284.931	754.64	2.649	28	0.5	379.991	1174.239	3.09	1535.7	430.57	1441.2	435.3	754.6403103	284.9311953	907.277206	329.4124431	M2_p20	2.3	2.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.522	28	0	0	NA	5qB1	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr5	3673162	3673162	T	C	ENSMUST00000014673.8	1	ENSMUSG00000014529	missense	I/T	231	Tmbim7	ENSMUST00000014673.8:c.692T>C	ENSMUSP00000014673.2:p.Ile231Thr	H-2-Kb	8	5	7	VLLIYGTI	VLLIYGII	NetMHCpan	142	579.7	4.082	350	0.226	310.354	756.542	2.438	1677.7	445.42	579.7	142	772.2181412	337.0854446	740.8665723	283.6220554	M2_p20	2.028571429	2.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.233	350	0	0	NA	5qA1	chr5-3344373-14859185	4	3	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr5	44045543	44045543	T	C	ENSMUST00000074113.12	1	ENSMUSG00000029086	missense	N/S	225	Prom1	ENSMUST00000074113.12:c.674A>G	ENSMUSP00000073751.6:p.Asn225Ser	H-2-Kb	8	10	2	KSKAFSDL	KNKAFSDL	SMMPMBEC	226.851	472.868	2.084	310	0.097	342.325	672.734	1.965	1196.36	446.56	872.6	585.1	440.2911945	238.0893668	472.8680813	226.8506354	M2_p20	-0.085714286	-0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.099	310	0	0	NA	5qB3	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	1	0.461469803	sgMsh2	cell line
chr5	121467865	121467865	C	T	ENSMUST00000124247.7	1	ENSMUSG00000029452	missense	L/F	116	Tmem116	ENSMUST00000124247.7:c.344C>T	ENSMUSP00000134334.2:p.Leu116Phe	H-2-Kb	8	14	3	ATFVSELL	ATLVSELL	NetMHCpan	305.4	2743.7	8.984	61	0.262	416.754	2295.931	5.509	3351.16	510.35	2743.7	305.4	1697.227266	406.2000757	1848.161845	427.3069928	M2_p20	1.371428571	1.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.279	61	0	0	NA	5qF	chr5-95270364-151647482	4	3	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr4	155069021	155069021	T	G	ENSMUST00000103180.3	1	ENSMUSG00000029047	missense	I/M	182	Pex10	ENSMUST00000103180.3:c.546T>G	ENSMUSP00000099469.3:p.Ile182Met	H-2-Kb	8	6	6	VAWFYMHG	VAWFYIHG	SMM	88.052	124.377	1.413	106	0.34	255.688	481.612	1.884	1556.42	599.87	818.1	399.5	124.3769779	88.05215715	145.1242539	111.8767908	M2_p20	0.1	0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.338	106	0	0	NA	4qE2	chr4-147681972-156223608	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr5	87694728	87694728	C	T	ENSMUST00000197422.4	1	ENSMUSG00000063157	missense	A/T	147	Csn2	ENSMUST00000197422.4:c.439G>A	ENSMUSP00000143341.1:p.Ala147Thr	H-2-Kb	8	9	3	SLTSLANL	SLASLANL	SMM	381.716	341.775	0.895	132	0.735	487.6	375.638	0.77	720.32	664.91	348.8	569	341.7747702	381.7156799	402.476011	406.2000757	M2_p20	1.171428571	1.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.724	132	0	0	NA	5qE1	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	3	1	sgMsh2	cell line
chr5	113095599	113095599	C	T	ENSMUST00000212276.1	5	ENSMUSG00000051339	missense	D/N	270	2900026A02Rik	ENSMUST00000212276.1:c.808G>A	ENSMUSP00000148442.1:p.Asp270Asn	H-2-Kb	8	5	7	STWMFKNS	STWMFKDS	SMMPMBEC	140.845	844.773	5.998	52	0.269	372.812	2140.473	5.741	7324.23	701.5	3346.1	600.5	934.8458404	145.1242539	844.7729517	140.8445349	M2_p20	-0.728571429	-0.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.287	52	0	0	NA	5qF	chr5-95270364-151647482	4	3	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr5	65630041	65630041	T	G	ENSMUST00000201948.3	5	ENSMUSG00000029202	missense	K/N	839	Pds5a	ENSMUST00000201948.3:c.2517A>C	ENSMUSP00000144171.1:p.Lys839Asn	H-2-Kb	8	10	2	INLLVRWL	IKLLVRWL	SMM	230.006	1131.723	4.92	43	0.14	371.257	4827.978	13.004	11218.97	962.76	8307.8	449.6	1131.72263	230.0064421	1348.155538	292.9139126	M2_p20	0.957142857	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.176	43	0	0	NA	5qC3.1	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	1	0.820390761	sgMsh2	cell line
chr5	101944143	101944143	T	A	ENSMUST00000053177.13	1	ENSMUSG00000043940	missense	K/N	443	Wdfy3	ENSMUST00000053177.13:c.1329A>T	ENSMUSP00000052607.7:p.Lys443Asn	H-2-Kb	9	8	4	VQNNYFEML	VQNKYFEML	NetMHC	62.66	107.77	1.72	125	0.336	165.336	170.625	1.032	107.77	62.66	106.6	107.7	272.3391013	275.4926395	233.4801695	222.9718309	M2_p20	-0.471428571	-0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.348	125	0	0	NA	5qE5	chr5-95270364-151647482	4	3	1	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr5	114823436	114823436	A	C	ENSMUST00000100850.5	1	ENSMUSG00000072694	missense	L/V	4	1500011B03Rik	ENSMUST00000100850.5:c.10T>G	ENSMUSP00000098411.4:p.Leu4Val	H-2-Kb	9	4	1	VGWMRLLPV	LGWMRLLPV	NetMHCpan	51.3	185	3.606	19	0.316	114.246	382.752	3.35	412.93	92.27	185	51.3	520.1277201	180.7631913	352.5737704	136.2228619	M2_p20	0.957142857	1.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.384	19	0	0	NA	5qF	chr5-95270364-151647482	4	3	1	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr5	52848016	52848016	A	G	ENSMUST00000031072.13	1	ENSMUSG00000029176	missense	Q/R	301	Anapc4	ENSMUST00000031072.13:c.902A>G	ENSMUSP00000031072.7:p.Gln301Arg	H-2-Kb	9	9	3	SVRDEFMHL	SVQDEFMHL	NetMHCpan	107.4	185.5	1.727	57	0.246	228.321	411.963	1.804	155.92	116.93	185.5	107.4	638.4251688	339.7113053	843.82036	474.5150595	M2_p20	-0.885714286	-0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.257	57	0	0	NA	5qC1	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr5	66284195	66284195	GT	G	ENSMUST00000031109.6	5	ENSMUSG00000029206	FS	S/X	402	Nsun7	ENSMUST00000031109.6:c.1208del	ENSMUSP00000031109.4:p.Leu403TyrfsTer26	H-2-Kb	9	26	0	SRLWFSSSL	NA	NetMHC	126.92	NA	NA	105	0.638	295.987	NA	NA	NA	126.92	NA	285.7	NA	306.2739079	NA	481.1162215	M2_p20	1.014285714	1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.63	105	0	0	NA	5qC3.1	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	3	1	sgMsh2	cell line
chr5	109215795	109215795	A	C	ENSMUST00000170341.2	5	ENSMUSG00000091059	missense	S/A	752	Vmn2r14	ENSMUST00000170341.2:c.2254T>G	ENSMUSP00000128015.1:p.Ser752Ala	H-2-Kb	9	4	8	FVLGYLGAL	FVLGYLGSL	NetMHC	156.06	158.77	1.017	64	0.094	248.989	232.756	0.935	158.77	156.06	213.6	288.2	257.6973782	248.9487787	251.9126636	249.0290432	M2_p20	1.585714286	1.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.106	64	0	0	NA	5qF	chr5-95270364-151647482	4	3	1	0.9	4.195180026	NA	1	0.494098981	sgMsh2	cell line
chr4	155069021	155069021	T	G	ENSMUST00000103180.3	1	ENSMUSG00000029047	missense	I/M	182	Pex10	ENSMUST00000103180.3:c.546T>G	ENSMUSP00000099469.3:p.Ile182Met	H-2-Kb	9	10	2	YMHGTFYHL	YIHGTFYHL	NetMHC	159.62	219.23	1.373	106	0.34	188.296	355.71	1.889	219.23	159.62	277.8	182.9	433.6206938	193.6912491	687.4640623	332.0855664	M2_p20	-0.314285714	-0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.338	106	0	0	NA	4qE2	chr4-147681972-156223608	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr4	155069021	155069021	T	G	ENSMUST00000103180.3	1	ENSMUSG00000029047	missense	I/M	182	Pex10	ENSMUST00000103180.3:c.546T>G	ENSMUSP00000099469.3:p.Ile182Met	H-2-Kb	9	7	5	AWFYMHGTF	AWFYIHGTF	SMM	130.05	341.279	2.624	106	0.34	193.94	435.221	2.244	455.25	209.54	926.2	545.8	341.2793414	130.0498932	415.1929781	178.3405083	M2_p20	0.271428571	0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.338	106	0	0	NA	4qE2	chr4-147681972-156223608	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr5	101944090	101944090	T	C	ENSMUST00000053177.13	1	ENSMUSG00000043940	missense	K/R	461	Wdfy3	ENSMUST00000053177.13:c.1382A>G	ENSMUSP00000052607.7:p.Lys461Arg	H-2-Kb	9	5	7	LNYIPCREL	LNYIPCKEL	NetMHCpan	162.8	323.2	1.985	159	0.327	262.115	363.046	1.385	484.84	218.66	323.2	162.8	341.2793414	305.5694975	384.8132346	375.1889162	M2_p20	-0.014285714	-0.014285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.321	159	0	0	NA	5qE5	chr5-95270364-151647482	4	3	1	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr5	115470836	115470836	T	C	ENSMUST00000031495.10	1	ENSMUSG00000029522	missense	M/T	30	Pla2g1b	ENSMUST00000031495.10:c.89T>C	ENSMUSP00000031495.4:p.Met30Thr	H-2-Kb	9	4	8	AVWQFRNTI	AVWQFRNMI	NetMHCpan	116.5	196	1.682	178	0.107	425.836	361.767	0.85	177.18	224.9	196	116.5	543.3879457	626.7725963	527.5334467	637.1621954	M2_p20	-0.828571429	-0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.109	178	0	0	NA	5qF	chr5-95270364-151647482	4	3	1	0.9	4.195180026	NA	1	0.508082914	sgMsh2	cell line
chr5	3673162	3673162	T	C	ENSMUST00000014673.8	1	ENSMUSG00000014529	missense	I/T	231	Tmbim7	ENSMUST00000014673.8:c.692T>C	ENSMUSP00000014673.2:p.Ile231Thr	H-2-Kb	9	7	5	LIYGTIALV	LIYGIIALV	NetMHC	255.57	661.63	2.589	350	0.226	399.072	568.543	1.425	661.63	255.57	1069.9	902.4	475.4556362	346.02701	472.3348608	452.1161284	M2_p20	1.7	1.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.233	350	0	0	NA	5qA1	chr5-3344373-14859185	4	3	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr5	16359028	16359028	T	C	ENSMUST00000039370.13	1	ENSMUSG00000040118	missense	V/A	903	Cacna2d1	ENSMUST00000039370.13:c.2708T>C	ENSMUSP00000049457.7:p.Val903Ala	H-2-Kb	9	4	8	KSYDYQSAC	KSYDYQSVC	NetMHCpan	276.2	497	1.799	135	0.733	416.065	787.162	1.892	922.32	305.81	497	276.2	924.9324152	656.3114787	652.0036095	526.3201534	M2_p20	-0.871428571	-0.871428571	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.726	135	0	0	NA	5qA3	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	3	1	sgMsh2	cell line
chr5	3673162	3673162	T	C	ENSMUST00000014673.8	1	ENSMUSG00000014529	missense	I/T	231	Tmbim7	ENSMUST00000014673.8:c.692T>C	ENSMUSP00000014673.2:p.Ile231Thr	H-2-Kb	9	4	8	SVLLIYGTI	SVLLIYGII	NetMHCpan	276.2	1014.9	3.675	350	0.226	446.055	804.767	1.804	1087.34	388.32	1014.9	276.2	565.0800826	505.9527957	594.6343592	503.7905305	M2_p20	2.028571429	2.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.233	350	0	0	NA	5qA1	chr5-3344373-14859185	4	3	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr4	155069021	155069021	T	G	ENSMUST00000103180.3	1	ENSMUSG00000029047	missense	I/M	182	Pex10	ENSMUST00000103180.3:c.546T>G	ENSMUSP00000099469.3:p.Ile182Met	H-2-Kb	9	6	6	VAWFYMHGT	VAWFYIHGT	SMMPMBEC	296.654	386.589	1.303	106	0.34	366.731	465.832	1.27	684.88	393.67	468.1	352.3	463.5643185	381.1623536	386.5894518	296.6538575	M2_p20	-0.257142857	0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.338	106	0	0	NA	4qE2	chr4-147681972-156223608	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr5	57721359	57721359	T	C	ENSMUST00000191837.5	1	ENSMUSG00000029108	missense	L/S	752	Pcdh7	ENSMUST00000191837.5:c.2255T>C	ENSMUSP00000142319.1:p.Leu752Ser	H-2-Kb	9	7	5	ISYTSLPPS	ISYTLLPPS	SMM	151.743	109.172	0.719	305	0.243	424.609	273.635	0.644	451.89	632.75	392.3	624.7	109.1716816	151.7434661	154.9708446	224.5173978	M2_p20	-0.428571429	0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.239	305	0	0	NA	5qC1	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr5	31040436	31040436	T	C	ENSMUST00000114668.6	1	ENSMUSG00000006641	missense	I/V	310	Slc5a6	ENSMUST00000114668.6:c.928A>G	ENSMUSP00000110316.1:p.Ile310Val	H-2-Kb	9	11	1	VGLVMFAYY	IGLVMFAYY	SMM	176.242	259.484	1.472	128	0.328	453.049	578.617	1.277	846.6	671.54	1237.9	1273.8	259.483651	176.2422384	310.6347231	234.557865	M2_p20	1.7	2.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.359	128	0	0	NA	5qB1	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr5	66284195	66284195	GT	G	ENSMUST00000031109.6	5	ENSMUSG00000029206	FS	S/X	402	Nsun7	ENSMUST00000031109.6:c.1208del	ENSMUSP00000031109.4:p.Leu403TyrfsTer26	H-2-Kb	9	11	2	SYFKIFLKV	NA	NetMHCpan	284.9	NA	NA	105	0.638	461.331	NA	NA	NA	808.39	NA	284.9	NA	503.6281538	NA	419.0347115	M2_p20	1.471428571	1.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.63	105	0	0	NA	5qC3.1	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	3	1	sgMsh2	cell line
chr5	66284195	66284195	GT	G	ENSMUST00000031109.6	5	ENSMUSG00000029206	FS	S/X	402	Nsun7	ENSMUST00000031109.6:c.1208del	ENSMUSP00000031109.4:p.Leu403TyrfsTer26	H-2-Kb	10	10	3	KSYFKIFLKV	NA	NetMHCpan	324.9	NA	NA	105	0.638	452.16	NA	NA	NA	376.69	NA	324.9	NA	527.6306309	NA	646.9340352	M2_p20	1.471428571	1.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.63	105	0	0	NA	5qC3.1	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	3	1	sgMsh2	cell line
chr5	137113037	137113037	C	T	ENSMUST00000054384.5	1	ENSMUSG00000043279	missense	A/T	542	Trim56	ENSMUST00000054384.5:c.1624G>A	ENSMUSP00000058109.5:p.Ala542Thr	H-2-Db	9	4	8	AALQNAVTF	AALQNAVAF	NetMHC	7.54	13.67	1.813	102	0.265	26.718	46.692	1.748	13.67	7.54	37.2	20.2	56.18495017	33.23686094	57.09130891	35.44622582	M2_p20	0.7	0.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.254	102	0	0	NA	5qG2	chr5-95270364-151647482	4	3	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr6	57600007	57600007	T	C	ENSMUST00000031817.9	1	ENSMUSG00000029798	missense	L/P	235	Herc6	ENSMUST00000031817.9:c.704T>C	ENSMUSP00000031817.8:p.Leu235Pro	H-2-Db	9	6	6	GALKNPSVI	GALKNLSVI	NetMHC	13.46	7.99	0.594	210	0.162	47.099	27.26	0.579	7.99	13.46	16.8	37.5	48.2636319	70.24574131	37.71985373	56.6982951	M2_p20	0.385714286	0.385714286	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.158	210	0	0	NA	6qB3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.73648716	sgMsh2	cell line
chr6	24089045	24089045	A	G	ENSMUST00000031713.8	1	ENSMUSG00000029700	missense	F/L	569	Slc13a1	ENSMUST00000031713.8:c.1705T>C	ENSMUSP00000031713.7:p.Phe569Leu	H-2-Db	9	6	6	VMLGMLTWI	VMLGMFTWI	SMMPMBEC	365.233	387.766	1.062	164	0.067	474.321	477.308	1.006	539.07	570.53	1711.2	2066.9	415.5468552	378.111599	387.766244	365.2329911	M2_p20	1.714285714	2.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.073	164	0	0	NA	6qA3.1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.340275713	sgMsh2	cell line
chr6	41627413	41627413	C	G	ENSMUST00000031902.6	1	ENSMUSG00000029868	missense	M/I	136	Trpv6	ENSMUST00000031902.6:c.408G>C	ENSMUSP00000031902.6:p.Met136Ile	H-2-Db	9	9	3	AAIVLMEAA	AAMVLMEAA	SMMPMBEC	216.556	275.15	1.271	167	0.198	446.121	563.52	1.263	838.89	659.1	1259.5	1600	288.150913	233.1417221	275.1503059	216.5558898	M2_p20	2.071428571	2.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.206	167	0	0	NA	6qB2.1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.960230095	sgMsh2	cell line
chr6	13193189	13193189	T	C	ENSMUST00000054530.6	1	ENSMUSG00000079679	missense	T/A	384	Vwde	ENSMUST00000054530.6:c.1150A>G	ENSMUSP00000058110.5:p.Thr384Ala	H-2-Kb	8	6	6	AVLYYAAV	AVLYYTAV	NetMHC	18.5	70.64	3.818	154	0.169	51.667	133.063	2.575	70.64	18.5	72.6	37	198.0341096	69.30107956	193.5263029	66.33458249	M2_p20	1.885714286	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.165	154	0	0	NA	6qA1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.769116338	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	8	4	8	VLVSYTRL	VLVSYTRI	NetMHC	19.39	171.38	8.839	175	0.229	31.763	209.772	6.604	171.38	19.39	99.5	20.3	348.1288376	53.67103866	248.1646968	43.22549746	M2_p20	0.642857143	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.236	175	0	0	NA	6qB2.1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	8	6	6	VSYTRLLV	VSYTRILV	NetMHCpan	35.2	39.9	1.134	175	0.229	94.957	84.621	0.891	32.04	39.69	39.9	35.2	129.3421274	150.2242346	135.1263357	158.7596015	M2_p20	0.642857143	0.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.236	175	0	0	NA	6qB2.1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr6	39493105	39493105	T	G	ENSMUST00000036877.9	1	ENSMUSG00000038456	missense	E/A	551	Dennd2a	ENSMUST00000036877.9:c.1652A>C	ENSMUSP00000045367.3:p.Glu551Ala	H-2-Kb	8	10	2	IAYQERQL	IEYQERQL	SMMPMBEC	44.029	206.414	4.688	105	0.143	58.854	2079.588	35.334	3849.62	57.35	4901.1	134.5	309.5565516	60.35871704	206.414404	44.02911945	M2_p20	-1.528571429	-1.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.136	105	0	0	NA	6qB1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.633938315	sgMsh2	cell line
chr6	35270381	35270381	A	G	ENSMUST00000031868.4	1	ENSMUSG00000029843	missense	I/T	568	Slc13a4	ENSMUST00000031868.4:c.1703T>C	ENSMUSP00000031868.4:p.Ile568Thr	H-2-Kb	8	11	1	TVFSYGHC	IVFSYGHC	SMMPMBEC	126.398	45.787	0.362	208	0.226	145.752	48.403	0.332	38.66	171.24	51.8	148.7	51.01994663	142.8038776	45.7867692	126.3979412	M2_p20	0.542857143	0.542857143	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.221	208	0	0	NA	6qB1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr6	30815960	30815960	A	G	ENSMUST00000048774.12	1	ENSMUSG00000025607	missense	V/A	480	Copg2	ENSMUST00000048774.12:c.1439T>C	ENSMUSP00000038368.6:p.Val480Ala	H-2-Kb	8	6	6	FIFNRAVL	FIFNRVVL	SMM	138.912	401.55	2.891	183	0.158	159.887	404.813	2.532	524.31	178.28	359.2	181.6	401.5503419	138.9120754	408.0750101	141.4946437	M2_p20	1.3	1.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.166	183	0	0	NA	6qA3.3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.773777649	sgMsh2	cell line
chr6	57003086	57003086	T	G	ENSMUST00000226689.1	NA	ENSMUSG00000115701	missense	D/E	244	Vmn1r6	ENSMUST00000226689.1:c.732T>G	ENSMUSP00000154450.1:p.Asp244Glu	H-2-Kb	8	6	6	VMYWVEFI	VMYWVDFI	NetMHCpan	188.7	325.8	1.727	648	0.015	374.386	446.257	1.192	436.75	288.79	325.8	188.7	455.7639811	459.9811133	636.4144033	572.4532166	M2_p20	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.018	648	0	0	NA	6qB3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.083903601	sgMsh2	cell line
chr6	24565963	24565963	A	T	ENSMUST00000117688.1	5	ENSMUSG00000029685	missense	Q/L	305	Asb15	ENSMUST00000117688.1:c.914A>T	ENSMUSP00000112965.1:p.Gln305Leu	H-2-Kb	8	4	8	VTSKHAIL	VTSKHAIQ	SMM	292.914	11796.142	40.272	202	0.134	414.664	18124.526	43.709	24452.91	437.82	24634.5	482.4	11796.14222	292.9139126	7042.713151	391.5074224	M2_p20	0.214285714	0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.136	202	0	0	NA	6qA3.1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.633938315	sgMsh2	cell line
chr6	38395159	38395159	A	G	ENSMUST00000162554.7	1	ENSMUSG00000056832	missense	N/S	228	Ttc26	ENSMUST00000162554.7:c.683A>G	ENSMUSP00000124369.1:p.Asn228Ser	H-2-Kb	8	8	4	KACSHFRL	KACNHFRL	SMMPMBEC	238.089	262.869	1.104	222	0.203	424.535	436.945	1.029	611.02	603.18	792.8	636.8	253.9451951	245.8895091	262.8693795	238.0893668	M2_p20	0.342857143	0.342857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.216	222	0	0	NA	6qB1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr6	30815960	30815960	A	G	ENSMUST00000048774.12	1	ENSMUSG00000025607	missense	V/A	480	Copg2	ENSMUST00000048774.12:c.1439T>C	ENSMUSP00000038368.6:p.Val480Ala	H-2-Kb	8	4	8	IRFIFNRA	IRFIFNRV	SMMPMBEC	232.135	48.277	0.208	183	0.158	482.306	47.673	0.099	40.71	683.59	149.1	1240.7	47.06954498	281.0217928	48.27696948	232.1346655	M2_p20	-0.085714286	0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.166	183	0	0	NA	6qA3.3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.773777649	sgMsh2	cell line
chr6	13193189	13193189	T	C	ENSMUST00000054530.6	1	ENSMUSG00000079679	missense	T/A	384	Vwde	ENSMUST00000054530.6:c.1150A>G	ENSMUSP00000058110.5:p.Thr384Ala	H-2-Kb	9	5	7	QAVLYYAAV	QAVLYYTAV	NetMHC	15.98	41.44	2.593	154	0.169	75.31	108.396	1.439	41.44	15.98	80.3	48.5	136.4928808	102.1198104	174.2809827	128.0117987	M2_p20	1.885714286	1.885714286	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.165	154	0	0	NA	6qA1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.769116338	sgMsh2	cell line
chr5	140524513	140524513	C	G	ENSMUST00000043050.8	1	ENSMUSG00000036599	missense	S/R	298	Chst12	ENSMUST00000043050.8:c.894C>G	ENSMUSP00000041663.8:p.Ser298Arg	H-2-Kb	9	6	6	VSEAFRAGL	VSEAFSAGL	NetMHC	20.94	18.1	0.864	64	0.578	152.901	140.712	0.92	18.1	20.94	97.3	105.7	184.1238299	242.1642333	188.4733717	200.1013414	M2_p20	0.257142857	0.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.55	64	0	0	NA	5qG2	chr5-95270364-151647482	4	3	1	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr6	39574941	39574941	T	C	ENSMUST00000140364.7	1	ENSMUSG00000046947	missense	V/A	214	Adck2	ENSMUST00000140364.7:c.641T>C	ENSMUSP00000123563.1:p.Val214Ala	H-2-Kb	9	10	2	QAYKAFASI	QVYKAFASI	NetMHC	27.71	34.78	1.255	80	0.087	93.422	104.976	1.124	34.78	27.71	39.3	35.1	170.6514568	151.7434661	250.1785091	216.3963843	M2_p20	0.7	0.7	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.124	80	0	0	NA	6qB1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.578002581	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	9	3	9	LVLVSYTRL	LVLVSYTRI	NetMHC	46.33	202.94	4.38	175	0.229	99.281	285.444	2.875	202.94	46.33	207.6	48.9	371.6293451	149.6614677	363.2871195	157.1267038	M2_p20	0.642857143	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.236	175	0	0	NA	6qB2.1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr6	41394716	41394716	A	G	ENSMUST00000049079.8	1	ENSMUSG00000058119	missense	N/S	32	Gm5771	ENSMUST00000049079.8:c.95A>G	ENSMUSP00000039684.7:p.Asn32Ser	H-2-Kb	9	11	1	SSVPYQVSL	NSVPYQVSL	NetMHCpan	55	427.2	7.767	628	0.17	192.657	1089.876	5.657	863.77	57.03	427.2	55	1486.312054	344.4371603	1315.982154	328.2842143	M2_p20	0.714285714	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.167	628	0	0	NA	6qB1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.77843896	sgMsh2	cell line
chr6	23001661	23001661	C	T	ENSMUST00000090568.6	1	ENSMUSG00000068748	missense	P/L	1250	Ptprz1	ENSMUST00000090568.6:c.3749C>T	ENSMUSP00000088056.3:p.Pro1250Leu	H-2-Kb	9	3	9	SMLHFTSVL	SMLHFTSVP	NetMHCpan	36.9	8207.6	222.428	321	0.218	75.69	4330.371	57.212	7854.9	63.05	8207.6	36.9	407.4834739	88.33035991	805.8421878	109.4586279	M2_p20	1.414285714	1.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.215	321	0	0	NA	6qA3.1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr6	35280331	35280331	T	C	ENSMUST00000031868.4	1	ENSMUSG00000029843	missense	I/V	291	Slc13a4	ENSMUST00000031868.4:c.871A>G	ENSMUSP00000031868.4:p.Ile291Val	H-2-Kb	9	8	4	TSLVFLEHF	TSLIFLEHF	NetMHC	97.42	117.96	1.211	110	0.318	193.774	212.916	1.099	117.96	97.42	246.7	203	223.4138023	184.5482792	202.4184057	205.7074402	M2_p20	1.528571429	1.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.304	110	0	0	NA	6qB1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr6	24089045	24089045	A	G	ENSMUST00000031713.8	1	ENSMUSG00000029700	missense	F/L	569	Slc13a1	ENSMUST00000031713.8:c.1705T>C	ENSMUSP00000031713.7:p.Phe569Leu	H-2-Kb	9	3	9	VAVVMLGML	VAVVMLGMF	NetMHC	108.71	331.29	3.047	164	0.067	155.842	309.598	1.987	331.29	108.71	1026.3	239.6	244.968363	145.2479461	287.9055255	166.4370463	M2_p20	2.771428571	2.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.073	164	0	0	NA	6qA3.1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.340275713	sgMsh2	cell line
chr5	137113037	137113037	C	T	ENSMUST00000054384.5	1	ENSMUSG00000043279	missense	A/T	542	Trim56	ENSMUST00000054384.5:c.1624G>A	ENSMUSP00000058109.5:p.Ala542Thr	H-2-Kb	9	10	2	VTFSANAKL	VAFSANAKL	NetMHCpan	65	62.3	0.958	102	0.265	170.759	131.688	0.771	94.29	109.11	62.3	65	169.0869148	232.8681001	179.9906727	232.4074256	M2_p20	0.285714286	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.254	102	0	0	NA	5qG2	chr5-95270364-151647482	4	3	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	9	4	8	VLVSYTRLL	VLVSYTRIL	NetMHCpan	118.1	254.3	2.153	175	0.229	338.726	712.479	2.103	683.46	204.18	254.3	118.1	741.4980274	473.271116	959.9530659	622.6586131	M2_p20	0.642857143	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.236	175	0	0	NA	6qB2.1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr5	137758482	137758482	TG	T	ENSMUST00000110985.1	2	ENSMUSG00000029723	FS	L/X	57	Tsc22d4	ENSMUST00000110985.1:c.177del	ENSMUSP00000106613.1:p.Pro60GlnfsTer18	H-2-Kb	9	22	0	VGWTKAFSL	NA	NetMHCpan	103.3	NA	NA	28	0.786	321.493	NA	NA	NA	216.16	NA	103.3	NA	472.1826226	NA	426.8251484	M2_p20	0.3	0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.751	28	0	0	NA	5qG2	chr5-95270364-151647482	4	3	1	0.9	4.195180026	NA	3	1	sgMsh2	cell line
chr6	24150744	24150744	A	G	ENSMUST00000031713.8	1	ENSMUSG00000029700	missense	M/T	65	Slc13a1	ENSMUST00000031713.8:c.194T>C	ENSMUSP00000031713.7:p.Met65Thr	H-2-Kb	9	10	2	LTFPMFGIM	LMFPMFGIM	NetMHCpan	61	76.9	1.261	283	0.141	178.113	78.007	0.438	169.25	237.72	76.9	61	66.54416808	176.6485187	79.11339102	179.5767056	M2_p20	1.7	1.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.133	283	0	0	NA	6qA3.1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.619954382	sgMsh2	cell line
chr6	57258876	57258876	T	C	ENSMUST00000228297.1	NA	ENSMUSG00000115199	missense	V/A	243	Vmn1r15	ENSMUST00000228297.1:c.728T>C	ENSMUSP00000154252.1:p.Val243Ala	H-2-Kb	9	5	7	FVVMYWADF	FVVMYWVDF	NetMHC	306.14	761.72	2.488	426	0.171	379.005	706.007	1.863	761.72	306.14	3331.3	836.6	650.2943789	450.9309038	416.1500968	307.0789168	M2_p20	0.714285714	1.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.172	426	0	0	NA	6qB3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.801745516	sgMsh2	cell line
chr6	57258876	57258876	T	C	ENSMUST00000228297.1	NA	ENSMUSG00000115199	missense	V/A	243	Vmn1r15	ENSMUST00000228297.1:c.728T>C	ENSMUSP00000154252.1:p.Val243Ala	H-2-Kb	9	7	5	VMYWADFII	VMYWVDFII	SMM	154.565	218.328	1.413	426	0.171	312.379	430.03	1.377	602.28	395.01	1029	537.3	218.3282833	154.5645878	257.7804634	229.7470798	M2_p20	1.128571429	1.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.172	426	0	0	NA	6qB3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.801745516	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	9	6	6	VSYTRLLVA	VSYTRILVA	NetMHCpan	129.9	163.6	1.259	175	0.229	176.155	270.535	1.536	712.71	415.25	163.6	129.9	323.6756285	203.287184	217.3952246	149.021867	M2_p20	1.014285714	1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.236	175	0	0	NA	6qB2.1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr6	57003086	57003086	T	G	ENSMUST00000226689.1	NA	ENSMUSG00000115701	missense	D/E	244	Vmn1r6	ENSMUST00000226689.1:c.732T>G	ENSMUSP00000154450.1:p.Asp244Glu	H-2-Kb	9	6	6	VMYWVEFII	VMYWVDFII	SMM	144.581	218.328	1.51	648	0.015	312.888	430.03	1.374	602.28	434.24	1029	747.6	218.3282833	144.5805924	257.7804634	191.5358177	M2_p20	1.471428571	1.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.018	648	0	0	NA	6qB3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.083903601	sgMsh2	cell line
chr6	39493105	39493105	T	G	ENSMUST00000036877.9	1	ENSMUSG00000038456	missense	E/A	551	Dennd2a	ENSMUST00000036877.9:c.1652A>C	ENSMUSP00000045367.3:p.Glu551Ala	H-2-Kb	9	10	2	IAYQERQLF	IEYQERQLF	SMM	265.528	1132.687	4.266	105	0.143	315.976	3770.763	11.934	7202.81	552.43	6255.5	310.4	1132.687219	265.5278017	1286.026743	321.5511003	M2_p20	-1.385714286	-1.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.136	105	0	0	NA	6qB1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.633938315	sgMsh2	cell line
chr6	57003086	57003086	T	G	ENSMUST00000226689.1	NA	ENSMUSG00000115701	missense	D/E	244	Vmn1r6	ENSMUST00000226689.1:c.732T>G	ENSMUSP00000154450.1:p.Asp244Glu	H-2-Kb	9	4	8	FVVMYWVEF	FVVMYWVDF	SMMPMBEC	300.781	416.15	1.384	648	0.015	466.271	706.007	1.514	761.72	564.32	3331.3	1984.3	650.2943789	368.2222268	416.1500968	300.7807237	M2_p20	1.057142857	2.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.018	648	0	0	NA	6qB3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.083903601	sgMsh2	cell line
chr6	65107887	65107887	A	G	ENSMUST00000031984.8	1	ENSMUSG00000029920	missense	Q/R	839	Smarcad1	ENSMUST00000031984.8:c.2516A>G	ENSMUSP00000031984.6:p.Gln839Arg	H-2-Db	9	4	8	YQHINSYRL	YQHINSYQL	NetMHC	46.38	17.14	0.37	470	0.068	162.3	82.302	0.507	17.14	46.38	39.4	66.6	125.2045178	258.0001747	166.5597269	403.2459368	M2_p20	-0.714285714	-0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.068	470	0	0	NA	6qC1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.316969157	sgMsh2	cell line
chr6	107567567	107567567	A	G	ENSMUST00000049285.9	1	ENSMUSG00000034648	missense	N/D	109	Lrrn1	ENSMUST00000049285.9:c.325A>G	ENSMUSP00000037096.8:p.Asn109Asp	H-2-Db	9	4	8	FSQNNFTDI	FSQNNFTNI	NetMHC	98.08	74.23	0.757	135	0.311	115.299	90.521	0.785	74.23	98.08	73.3	114.3	106.8119884	136.3389673	112.3492041	116.2973985	M2_p20	-1.057142857	-0.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.292	135	0	0	NA	6qE1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr6	123851989	123851989	A	G	ENSMUST00000162046.2	1	ENSMUSG00000094672	missense	F/L	109	Vmn2r25	ENSMUST00000162046.2:c.325T>C	ENSMUSP00000124342.1:p.Phe109Leu	H-2-Db	9	8	4	FFLLNVNFI	FFLFNVNFI	SMM	60.9	90.912	1.493	274	0.153	86.009	125.004	1.453	135.57	98.47	414.6	361.4	90.91174628	60.90037965	114.4379317	73.54785311	M2_p20	1.728571429	1.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.161	274	0	0	NA	6qF2	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.750471093	sgMsh2	cell line
chr6	115490061	115490061	A	G	ENSMUST00000000450.4	1	ENSMUSG00000000440	missense	K/E	462	Pparg	ENSMUST00000000450.4:c.1384A>G	ENSMUSP00000000450.3:p.Lys462Glu	H-2-Kb	8	5	7	SSQLFAEV	SSQLFAKV	NetMHC	11.08	10.22	0.922	155	0.09	49.939	38.967	0.78	10.22	11.08	37.5	46.7	40.43337559	53.17897962	44.8476819	64.97405923	M2_p20	0.685714286	0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.102	155	0	0	NA	6qE3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.475453736	sgMsh2	cell line
chr6	134451069	134451069	T	C	ENSMUST00000032322.14	1	ENSMUSG00000030201	missense	Y/C	1520	Lrp6	ENSMUST00000032322.14:c.4559A>G	ENSMUSP00000032322.8:p.Tyr1520Cys	H-2-Kb	8	4	8	RSYSYRPC	RSYSYRPY	NetMHC	22.95	107.06	4.665	102	0.186	38.31	109.727	2.864	107.06	22.95	418.8	63.3	112.3931906	35.05419514	72.90209351	41.56616909	M2_p20	-1.114285714	-1.114285714	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.185	102	0	0	NA	6qG1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.862342561	sgMsh2	cell line
chr6	132755465	132755465	C	T	ENSMUST00000076150.2	NA	ENSMUSG00000060412	missense	L/F	246	Tas2r124	ENSMUST00000076150.2:c.736C>T	ENSMUSP00000075509.2:p.Leu246Phe	H-2-Kb	8	5	7	TIYFLSFL	TIYFLSLL	NetMHCpan	17.1	14.2	0.83	264	0.144	27.12	33.393	1.231	23.56	25.55	14.2	17.1	43.22549746	28.6906244	50.08872766	34.97357273	M2_p20	2.228571429	2.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.155	264	0	0	NA	6qG1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.722503227	sgMsh2	cell line
chr6	123851989	123851989	A	G	ENSMUST00000162046.2	1	ENSMUSG00000094672	missense	F/L	109	Vmn2r25	ENSMUST00000162046.2:c.325T>C	ENSMUSP00000124342.1:p.Phe109Leu	H-2-Kb	8	4	8	KSLGFFLL	KSLGFFLF	NetMHCpan	29.7	299.8	10.094	274	0.153	44.28	697.658	15.756	748.56	38.93	299.8	29.7	806.7519058	49.62951144	646.7553055	51.49202839	M2_p20	2.257142857	2.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.161	274	0	0	NA	6qF2	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.750471093	sgMsh2	cell line
chr6	126534398	126534398	T	C	ENSMUST00000060972.4	NA	ENSMUSG00000045534	missense	I/V	256	Kcna5	ENSMUST00000060972.4:c.766A>G	ENSMUSP00000055673.3:p.Ile256Val	H-2-Kb	8	8	4	ISIVTFCL	ISIITFCL	NetMHC	52.88	64.85	1.226	155	0.148	141.597	162.48	1.147	64.85	52.88	110.8	103	269.6124854	248.1646968	214.1608096	180.1938647	M2_p20	2.328571429	2.428571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.145	155	0	0	NA	6qF3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.675890115	sgMsh2	cell line
chr6	115617607	115617607	T	C	ENSMUST00000000449.8	1	ENSMUSG00000000439	missense	V/A	376	Mkrn2	ENSMUST00000000449.8:c.1127T>C	ENSMUSP00000000449.7:p.Val376Ala	H-2-Kb	8	6	6	RFFNSARL	RFFNSVRL	SMM	46.746	135.126	2.891	110	0.173	67.97	216.358	3.183	259.04	75.72	339.4	185.1	135.1263357	46.74552051	173.6760767	60.21989584	M2_p20	0.342857143	0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.185	110	0	0	NA	6qE3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.862342561	sgMsh2	cell line
chr6	114302629	114302629	A	G	ENSMUST00000032454.7	1	ENSMUSG00000030310	missense	K/R	123	Slc6a1	ENSMUST00000032454.7:c.368A>G	ENSMUSP00000032454.5:p.Lys123Arg	H-2-Kb	8	6	6	LAPMFRGV	LAPMFKGV	NetMHC	85.05	307.58	3.616	118	0.203	326.028	633.35	1.943	307.58	85.05	408.2	184.6	1126.522836	545.4312289	858.499408	467.4552051	M2_p20	0.6	0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.21	118	0	0	NA	6qE3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.978875339	sgMsh2	cell line
chr6	126534398	126534398	T	C	ENSMUST00000060972.4	NA	ENSMUSG00000045534	missense	I/V	256	Kcna5	ENSMUST00000060972.4:c.766A>G	ENSMUSP00000055673.3:p.Ile256Val	H-2-Kb	8	11	1	VTFCLETL	ITFCLETL	NetMHCpan	48.8	53.4	1.094	155	0.148	87.068	91.435	1.05	104.06	91.96	53.4	48.8	87.64759423	82.17505435	95.22259222	97.66523514	M2_p20	1.142857143	1.2	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.145	155	0	0	NA	6qF3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.675890115	sgMsh2	cell line
chr6	59003477	59003477	G	A	ENSMUST00000089860.11	1	ENSMUSG00000037709	missense	P/L	20	Fam13a	ENSMUST00000089860.11:c.59C>T	ENSMUSP00000087304.5:p.Pro20Leu	H-2-Kb	8	11	1	LFYLSAHV	PFYLSAHV	NetMHC	94.58	2283.96	24.148	377	0.09	157.599	1836.54	11.653	2283.96	94.58	8382.7	400.6	1053.755853	151.6142424	1389.120754	163.5836898	M2_p20	1.042857143	1.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.105	377	0	0	NA	6qB3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.48943767	sgMsh2	cell line
chr6	124908510	124908510	CG	C	ENSMUST00000032217.1	1	ENSMUSG00000030124	FS	P/X	302	Lag3	ENSMUST00000032217.1:c.906del	ENSMUSP00000032217.1:p.Val303TrpfsTer45	H-2-Kb	8	16	0	VAILPFTL	NA	NetMHC	108.05	NA	NA	76	0.184	209.178	NA	NA	NA	108.05	NA	108.8	NA	309.5565516	NA	376.4783444	M2_p20	2.057142857	2.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.191	76	0	0	NA	6qF2	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.890310428	sgMsh2	cell line
chr6	134451069	134451069	T	C	ENSMUST00000032322.14	1	ENSMUSG00000030201	missense	Y/C	1520	Lrp6	ENSMUST00000032322.14:c.4559A>G	ENSMUSP00000032322.8:p.Tyr1520Cys	H-2-Kb	8	11	1	CSYRHFAP	YSYRHFAP	NetMHC	134.9	77.72	0.576	102	0.186	195.012	134.543	0.69	77.72	134.9	80.4	161.6	188.68614	228.4230889	247.5939338	382.5956254	M2_p20	-0.971428571	-0.385714286	TRUE	FALSE	TRUE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.185	102	0	0	NA	6qG1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.862342561	sgMsh2	cell line
chr6	116702006	116702006	GC	G	ENSMUST00000056623.12	1	ENSMUSG00000048108	FS	G/X	36	Tmem72	ENSMUST00000056623.12:c.108del	ENSMUSP00000057942.6:p.Arg37GlyfsTer77	H-2-Kb	8	80	0	STLSWSGM	NA	NetMHC	165.56	NA	NA	80	0.225	251.323	NA	NA	NA	165.56	NA	224.2	NA	308.8445912	NA	278.4453695	M2_p20	0.3	0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.193	80	0	0	NA	6qE3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.89963305	sgMsh2	cell line
chr6	123815817	123815817	T	C	ENSMUST00000075095.6	5	ENSMUSG00000072780	missense	M/T	701	Vmn2r24	ENSMUST00000075095.6:c.2102T>C	ENSMUSP00000074602.5:p.Met701Thr	H-2-Kb	8	6	6	QMWMVTRL	QMWMVMRL	NetMHC	249.67	165.69	0.664	869	0.04	456.149	439.641	0.964	165.69	249.67	358.4	310.1	520.8827797	666.4076901	533.0156983	602.1989584	M2_p20	0.814285714	0.814285714	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.039	869	0	0	NA	6qF2	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.181791134	sgMsh2	cell line
chr6	125980155	125980155	A	G	ENSMUST00000160496.7	1	ENSMUSG00000038115	missense	K/R	629	Ano2	ENSMUST00000160496.7:c.1886A>G	ENSMUSP00000125303.1:p.Lys629Arg	H-2-Kb	8	6	6	KAFLLRFV	KAFLLKFV	NetMHCpan	272.4	547.6	2.01	358	0.201	351.17	682.716	1.944	1229.78	480.77	547.6	272.4	681.9303192	330.1718172	683.502331	372.1688324	M2_p20	2.1	2.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.212	358	0	0	NA	6qF3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.988197962	sgMsh2	cell line
chr6	119320562	119320562	A	G	ENSMUST00000068351.13	2	ENSMUSG00000055003	missense	S/P	173	Lrtm2	ENSMUST00000068351.13:c.517T>C	ENSMUSP00000063882.7:p.Ser173Pro	H-2-Kb	8	7	5	LSLRPNRL	LSLRSNRL	SMM	331.696	237.542	0.716	37	0.189	433.071	256.722	0.593	268.12	522.79	551.4	975	237.5417764	331.6958211	245.323979	343.3523309	M2_p20	-1.042857143	-1.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.192	37	0	0	NA	6qF1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.894971739	sgMsh2	cell line
chr6	72515320	72515320	A	G	ENSMUST00000162561.8	1	ENSMUSG00000052631	missense	V/A	181	Sh2d6	ENSMUST00000162561.8:c.542T>C	ENSMUSP00000124673.2:p.Val181Ala	H-2-Kb	8	5	7	QPFTLAAL	QPFTLAVL	SMM	136.691	321.914	2.355	97	0.175	392.013	1659.23	4.233	2868.95	584.16	4165.5	2841.1	321.9141004	136.691025	449.5106648	199.8664966	M2_p20	1.671428571	1.671428571	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.206	97	0	0	NA	6qC1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.960230095	sgMsh2	cell line
chr6	123851989	123851989	A	G	ENSMUST00000162046.2	1	ENSMUSG00000094672	missense	F/L	109	Vmn2r25	ENSMUST00000162046.2:c.325T>C	ENSMUSP00000124342.1:p.Phe109Leu	H-2-Kb	8	6	6	LGFFLLNV	LGFFLFNV	NetMHCpan	149.9	127.9	0.853	274	0.153	327.146	197.604	0.604	312.5	598.05	127.9	149.9	200.7890385	326.3923717	194.4195797	327.8989304	M2_p20	1.928571429	1.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.161	274	0	0	NA	6qF2	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.750471093	sgMsh2	cell line
chr6	124908510	124908510	CG	C	ENSMUST00000032217.1	1	ENSMUSG00000030124	FS	P/X	302	Lag3	ENSMUST00000032217.1:c.906del	ENSMUSP00000032217.1:p.Val303TrpfsTer45	H-2-Kb	8	24	0	RLWVWHRL	NA	SMMPMBEC	207.367	NA	NA	76	0.184	336.204	NA	NA	NA	1111.14	NA	304.5	NA	367.908651	NA	207.3671696	M2_p20	0.328571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.191	76	0	0	NA	6qF2	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.890310428	sgMsh2	cell line
chr6	132755465	132755465	C	T	ENSMUST00000076150.2	NA	ENSMUSG00000060412	missense	L/F	246	Tas2r124	ENSMUST00000076150.2:c.736C>T	ENSMUSP00000075509.2:p.Leu246Phe	H-2-Kb	9	4	8	YTIYFLSFL	YTIYFLSLL	NetMHC	45.97	33.27	0.724	264	0.144	127.206	76.764	0.603	33.27	45.97	50.7	66	102.8276712	188.4126249	141.6609011	235.640535	M2_p20	2.228571429	2.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.155	264	0	0	NA	6qG1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.722503227	sgMsh2	cell line
chr6	116022230	116022230	C	A	ENSMUST00000088896.9	1	ENSMUSG00000030126	missense	V/L	603	Tmcc1	ENSMUST00000088896.9:c.1807G>T	ENSMUSP00000086285.3:p.Val603Leu	H-2-Kb	9	3	9	VLLVFVSTL	VLLVFVSTV	NetMHCpan	45.4	257.3	5.667	973	0.046	151.246	412.494	2.727	199.91	50.08	257.3	45.4	567.6883738	252.4120012	637.1621954	284.6098982	M2_p20	2.471428571	3.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.043	973	0	0	NA	6qE3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.200436379	sgMsh2	cell line
chr6	69243462	69243462	A	G	ENSMUST00000196201.1	NA	ENSMUSG00000073028	missense	V/A	17	Igkv4-71	ENSMUST00000196201.1:c.50T>C	ENSMUSP00000142768.1:p.Val17Ala	H-2-Kb	9	10	2	SAILFRGQI	SVILFRGQI	NetMHC	64.67	86.25	1.334	357	0.168	190.505	228.341	1.199	86.25	64.67	119.2	89.1	387.3557436	344.4371603	337.4815227	291.9106903	M2_p20	1.028571429	1.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.168	357	0	0	NA	6qC1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.783100271	sgMsh2	cell line
chr6	124908510	124908510	CG	C	ENSMUST00000032217.1	1	ENSMUSG00000030124	FS	P/X	302	Lag3	ENSMUST00000032217.1:c.906del	ENSMUSP00000032217.1:p.Val303TrpfsTer45	H-2-Kb	9	17	0	AILPFTLRL	NA	NetMHCpan	45.3	NA	NA	76	0.184	185.425	NA	NA	NA	88.29	NA	45.3	NA	282.5595563	NA	326.7758854	M2_p20	1.057142857	2.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.191	76	0	0	NA	6qF2	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.890310428	sgMsh2	cell line
chr6	134451069	134451069	T	C	ENSMUST00000032322.14	1	ENSMUSG00000030201	missense	Y/C	1520	Lrp6	ENSMUST00000032322.14:c.4559A>G	ENSMUSP00000032322.8:p.Tyr1520Cys	H-2-Kb	9	11	1	CSYRHFAPP	YSYRHFAPP	SMM	43.965	47.985	1.091	102	0.186	101.949	75.581	0.741	74.91	111.8	101.8	153.6	47.9854973	43.96529586	76.25178243	92.09795777	M2_p20	-1.085714286	-0.385714286	TRUE	FALSE	TRUE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.185	102	0	0	NA	6qG1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.862342561	sgMsh2	cell line
chr6	115617607	115617607	T	C	ENSMUST00000000449.8	1	ENSMUSG00000000439	missense	V/A	376	Mkrn2	ENSMUST00000000449.8:c.1127T>C	ENSMUSP00000000449.7:p.Val376Ala	H-2-Kb	9	5	7	VRFFNSARL	VRFFNSVRL	NetMHC	132.8	243.55	1.834	110	0.173	175.695	250.962	1.428	243.55	132.8	387	245.5	231.7981684	160.7348318	258.3747087	190.6557905	M2_p20	0.342857143	0.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.185	110	0	0	NA	6qE3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.862342561	sgMsh2	cell line
chr6	59003477	59003477	G	A	ENSMUST00000089860.11	1	ENSMUSG00000037709	missense	P/L	20	Fam13a	ENSMUST00000089860.11:c.59C>T	ENSMUSP00000087304.5:p.Pro20Leu	H-2-Kb	9	10	2	SLFYLSAHV	SPFYLSAHV	NetMHC	174.69	536.79	3.073	377	0.09	418.616	1523.201	3.639	536.79	174.69	1739.9	211.9	1306.501763	625.3310593	1871.759302	745.1607995	M2_p20	1.042857143	1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.105	377	0	0	NA	6qB3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.48943767	sgMsh2	cell line
chr6	132755465	132755465	C	T	ENSMUST00000076150.2	NA	ENSMUSG00000060412	missense	L/F	246	Tas2r124	ENSMUST00000076150.2:c.736C>T	ENSMUSP00000075509.2:p.Leu246Phe	H-2-Kb	9	5	7	TIYFLSFLI	TIYFLSLLI	SMM	227.044	253.577	1.117	264	0.144	313.471	337.294	1.076	425.72	332.33	374.5	358.1	253.577082	227.0439846	300.0889473	294.6117067	M2_p20	2.228571429	2.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.155	264	0	0	NA	6qG1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.722503227	sgMsh2	cell line
chr6	123815817	123815817	T	C	ENSMUST00000075095.6	5	ENSMUSG00000072780	missense	M/T	701	Vmn2r24	ENSMUST00000075095.6:c.2102T>C	ENSMUSP00000074602.5:p.Met701Thr	H-2-Kb	9	8	4	WMVTRLSNV	WMVMRLSNV	SMMPMBEC	371.749	308.496	0.83	869	0.04	393.346	326.071	0.829	273.51	374.49	1055.2	1159.9	343.6449768	412.2019102	308.4963287	371.7491635	M2_p20	0.385714286	0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.039	869	0	0	NA	6qF2	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.181791134	sgMsh2	cell line
chr6	113578387	113578387	T	A	ENSMUST00000036340.11	1	ENSMUSG00000034023	missense	F/Y	1119	Fancd2	ENSMUST00000036340.11:c.3356T>A	ENSMUSP00000045667.5:p.Phe1119Tyr	H-2-Kb	9	3	9	QSFSYLQNY	QSFSYLQNF	SMM	108.67	62.389	0.574	196	0.214	297.381	61.045	0.205	32.08	374.85	59.7	1857.1	62.38928378	108.6700833	111.2371876	219.9125427	M2_p20	-0.542857143	-0.471428571	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.231	196	0	0	NA	6qE3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr7	26611187	26611187	T	C	ENSMUST00000228367.1	NA	ENSMUSG00000091924	missense	M/V	298	Vmn1r185	ENSMUST00000228367.1:c.892A>G	ENSMUSP00000154816.1:p.Met298Val	H-2-Db	9	8	4	YSLVSRFNL	YSLMSRFNL	NetMHC	136.82	215.91	1.578	141	0.355	299.155	452.516	1.513	215.91	136.82	303	280.9	602.0325877	317.4095578	657.007005	372.8807814	M2_p20	0.828571429	0.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.36	141	0	0	NA	7qA3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr7	25272796	25272796	A	G	ENSMUST00000169266.7	1	ENSMUSG00000005442	missense	I/V	651	Cic	ENSMUST00000169266.7:c.1951A>G	ENSMUSP00000132351.1:p.Ile651Val	H-2-Db	10	2	10	FSPINASPVV	FSPINASPVI	NetMHC	14.9	8.41	0.564	47	0.362	465.206	229.143	0.493	8.41	14.9	34.4	92.4	423.8869047	838.0115415	542.8376978	1013.141255	M2_p20	1.257142857	1.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.382	47	0	0	NA	7qA3	chr7-11669330-25950707	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr7	28320255	28320255	A	G	ENSMUST00000209141.1	1	ENSMUSG00000003435	missense	F/L	497	Supt5	ENSMUST00000209141.1:c.1489T>C	ENSMUSP00000147164.1:p.Phe497Leu	H-2-Kb	8	11	1	LVILFSDL	FVILFSDL	NetMHCpan	33.8	63.7	1.885	119	0.277	68.106	75.272	1.105	40.58	34.18	63.7	33.8	93.70008827	130.2386842	86.84403626	102.0328459	M2_p20	2.114285714	2.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.277	119	0	0	NA	7qA3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr7	6461136	6461136	T	C	ENSMUST00000214301.2	5	ENSMUSG00000048620	missense	V/A	209	Olfr1336	ENSMUST00000214301.2:c.626T>C	ENSMUSP00000150162.1:p.Val209Ala	H-2-Kb	8	10	2	IAILWGSL	IVILWGSL	NetMHCpan	26.7	38.1	1.427	346	0.277	48.129	52.985	1.101	49.64	35.34	38.1	26.7	82.36448742	81.04757034	56.33003227	60.91720937	M2_p20	1.685714286	1.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.286	346	0	0	NA	7qA1	chr7-3895077-7214089	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr7	58786559	58786559	AT	A	ENSMUST00000168747.2	1	ENSMUSG00000025324	FS	F/X	366	Atp10a	ENSMUST00000168747.2:c.1101del	ENSMUSP00000129811.1:p.Phe367LeufsTer3	H-2-Kb	8	5	8	TAAVYSFL	TAAVYSFF	NetMHCpan	49	440.4	8.988	46	0.304	79.762	1502.816	18.841	1682.67	64.52	440.4	49	1544.329616	95.00358634	1461.302072	116.3429308	M2_p20	1.757142857	1.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.302	46	0	0	NA	7qB5	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr6	141532679	141532679	A	G	ENSMUST00000032362.11	1	ENSMUSG00000030235	missense	K/R	56	Slco1c1	ENSMUST00000032362.11:c.167A>G	ENSMUSP00000032362.9:p.Lys56Arg	H-2-Kb	8	4	8	LSFVYFAR	LSFVYFAK	NetMHC	71.6	273.33	3.817	153	0.17	97.337	165.283	1.698	273.33	71.6	241.7	126.8	88.86689373	86.84403626	56.4598864	107.830098	M2_p20	0.714285714	1.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.154	153	0	0	NA	6qG2	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.717841915	sgMsh2	cell line
chr6	141532679	141532679	A	G	ENSMUST00000032362.11	1	ENSMUSG00000030235	missense	K/R	56	Slco1c1	ENSMUST00000032362.11:c.167A>G	ENSMUSP00000032362.9:p.Lys56Arg	H-2-Kb	8	5	7	SFVYFARA	SFVYFAKA	NetMHC	104.42	421.4	4.036	153	0.17	172.62	538.576	3.12	421.4	104.42	215.7	105.5	804.8964279	281.6696149	655.752568	239.7397234	M2_p20	1.085714286	1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.154	153	0	0	NA	6qG2	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.717841915	sgMsh2	cell line
chr6	141532679	141532679	A	G	ENSMUST00000032362.11	1	ENSMUSG00000030235	missense	K/R	56	Slco1c1	ENSMUST00000032362.11:c.167A>G	ENSMUSP00000032362.9:p.Lys56Arg	H-2-Kb	8	6	6	FVYFARAL	FVYFAKAL	NetMHCpan	53.9	100.9	1.872	153	0.17	100.957	211.274	2.093	281	106.91	100.9	53.9	196.218522	95.00358634	226.3288934	123.2366829	M2_p20	1.228571429	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.154	153	0	0	NA	6qG2	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.717841915	sgMsh2	cell line
chr7	4469203	4469203	GA	G	ENSMUST00000163893.7	1	ENSMUSG00000006154	FS	R/X	22	Eps8l1	ENSMUST00000163893.7:c.69del	ENSMUSP00000125840.1:p.Lys23AsnfsTer56	H-2-Kb	8	6	7	SIYEQRNV	SIYEQRKR	SMM	80.305	2021.808	25.177	190	0.358	140.518	10629.403	75.645	16431.11	121.91	19443.2	292.4	2021.808416	80.30452175	4827.696948	159.1255801	M2_p20	-1.085714286	-1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.352	190	0	0	NA	7qA1	chr7-3895077-7214089	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr6	134451076	134451076	T	C	ENSMUST00000032322.14	1	ENSMUSG00000030201	missense	R/G	1518	Lrp6	ENSMUST00000032322.14:c.4552A>G	ENSMUSP00000032322.8:p.Arg1518Gly	H-2-Kb	8	6	6	RSYSYGPY	RSYSYRPY	SMMPMBEC	72.902	72.902	1	96	0.188	122.156	109.727	0.898	107.06	123.88	418.8	436.7	112.3931906	120.4314735	72.90209351	72.90209351	M2_p20	-1.071428571	-1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.185	96	0	0	NA	6qG1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.862342561	sgMsh2	cell line
chr7	9014988	9014988	GA	G	ENSMUST00000174388.3	5	ENSMUSG00000096658	FS	F/X	783	Vmn2r39	ENSMUST00000174388.3:c.2348del	ENSMUSP00000134010.1:p.Phe783SerfsTer53	H-2-Kb	8	40	0	SSPSWHPV	NA	NetMHC	187.53	NA	NA	176	0.438	267.488	NA	NA	NA	187.53	NA	341	NA	262.8693795	NA	272.1071791	M2_p20	-0.671428571	-0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.465	176	0	0	NA	7qA1	chr7-8138478-9928805	4.89419349	3.89419349	1	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr7	26611187	26611187	T	C	ENSMUST00000228367.1	NA	ENSMUSG00000091924	missense	M/V	298	Vmn1r185	ENSMUST00000228367.1:c.892A>G	ENSMUSP00000154816.1:p.Met298Val	H-2-Kb	8	4	8	FMRSYSLV	FMRSYSLM	NetMHC	238.94	166.52	0.697	141	0.355	450.026	344.108	0.765	166.52	238.94	202.1	466.8	486.1160944	433.2514252	558.1359543	516.1072977	M2_p20	0.357142857	0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.36	141	0	0	NA	7qA3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr7	12925578	12925578	A	C	ENSMUST00000108539.7	2	ENSMUSG00000012848	missense	I/L	99	Rps5	ENSMUST00000108539.7:c.295A>C	ENSMUSP00000104179.1:p.Ile99Leu	H-2-Kb	8	7	5	HAFELIHL	HAFEIIHL	NetMHCpan	219.9	339.6	1.544	153	0.203	293.645	752.427	2.562	777.51	277.02	339.6	219.9	1039.297781	347.3281635	727.3442335	310.2701531	M2_p20	1.428571429	1.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.204	153	0	0	NA	7qA1	chr7-11669330-25950707	3	2	1	0.9	4.195180026	NA	1	0.950907472	sgMsh2	cell line
chr7	9014988	9014988	GA	G	ENSMUST00000174388.3	5	ENSMUSG00000096658	FS	F/X	783	Vmn2r39	ENSMUST00000174388.3:c.2348del	ENSMUSP00000134010.1:p.Phe783SerfsTer53	H-2-Kb	8	18	0	VSVSPSSL	NA	SMM	233.206	NA	NA	176	0.438	274.81	NA	NA	NA	286.75	NA	453.4	NA	233.2061504	NA	262.8693795	M2_p20	0.457142857	0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.465	176	0	0	NA	7qA1	chr7-8138478-9928805	4.89419349	3.89419349	1	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr7	45337484	45337484	G	A	ENSMUST00000085351.6	1	ENSMUSG00000038239	missense	E/K	658	Hrc	ENSMUST00000085351.6:c.1972G>A	ENSMUSP00000082459.4:p.Glu658Lys	H-2-Kb	8	11	1	KNYQPGSL	ENYQPGSL	SMM	151.964	852.59	5.61	86	0.07	192.535	1937.516	10.063	4938.26	292.7	2974	188.4	852.5895396	151.9637493	901.0315536	196.6708524	M2_p20	-1.042857143	-1.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.096	86	0	0	NA	7qB3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	0.447485869	sgMsh2	cell line
chr7	48168564	48168564	G	A	ENSMUST00000094389.3	NA	ENSMUSG00000070551	missense	T/I	141	Mrgprb5	ENSMUST00000094389.3:c.422C>T	ENSMUSP00000091953.2:p.Thr141Ile	H-2-Kb	8	11	1	ISSIMCAL	TSSIMCAL	SMM	258.666	724.002	2.799	255	0.204	310.053	1204.279	3.884	1616.53	333.2	1671	427	724.0023903	258.6663888	792.027024	286.906244	M2_p20	1.842857143	1.942857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.209	255	0	0	NA	7qB4	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	0.974214028	sgMsh2	cell line
chr7	4242170	4242170	A	T	ENSMUST00000117550.1	1	ENSMUSG00000070873	missense	H/L	271	Lilra5	ENSMUST00000117550.1:c.812A>T	ENSMUSP00000113091.1:p.His271Leu	H-2-Kb	8	4	8	VLLFEAQL	VLLFEAQH	NetMHCpan	179.2	23345.8	130.278	72	0.292	295.154	24093.76	81.631	24841.72	365	23345.8	179.2	43126.08157	358.7071224	10017.05365	231.6007706	M2_p20	1.285714286	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.293	72	0	0	NA	7qA1	chr7-3895077-7214089	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr7	13028552	13028552	C	A	ENSMUST00000005705.7	1	ENSMUSG00000005566	missense	L/M	368	Trim28	ENSMUST00000005705.7:c.1102C>A	ENSMUSP00000005705.7:p.Leu368Met	H-2-Kb	8	9	3	KKMIYFQL	KKLIYFQL	SMMPMBEC	242.516	183.967	0.759	73	0.315	424.719	506.319	1.192	828.67	832.15	1033.4	533.4	183.9670312	316.0385059	183.9670312	242.5157786	M2_p20	0.614285714	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.32	73	0	0	NA	7qA1	chr7-11669330-25950707	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr7	56729688	56729688	A	G	ENSMUST00000068911.12	1	ENSMUSG00000055026	missense	V/A	322	Gabrg3	ENSMUST00000068911.12:c.965T>C	ENSMUSP00000067632.6:p.Val322Ala	H-2-Kb	8	9	3	VTACFLFV	VTVCFLFV	SMM	141.495	95.223	0.673	165	0.285	356.569	180.348	0.506	245.42	845.85	392.1	489.4	95.22259222	141.4946437	115.2762924	223.738128	M2_p20	2.457142857	2.457142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.279	165	0	0	NA	7qB5	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr6	141532679	141532679	A	G	ENSMUST00000032362.11	1	ENSMUSG00000030235	missense	K/R	56	Slco1c1	ENSMUST00000032362.11:c.167A>G	ENSMUSP00000032362.9:p.Lys56Arg	H-2-Kb	9	4	8	LSFVYFARA	LSFVYFAKA	NetMHC	8.07	18.23	2.259	153	0.17	41.355	63.038	1.524	18.23	8.07	19.6	12.2	162.2220929	88.94263671	106.4755765	70.50988397	M2_p20	1.085714286	1.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.154	153	0	0	NA	6qG2	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.717841915	sgMsh2	cell line
chr7	26611187	26611187	T	C	ENSMUST00000228367.1	NA	ENSMUSG00000091924	missense	M/V	298	Vmn1r185	ENSMUST00000228367.1:c.892A>G	ENSMUSP00000154816.1:p.Met298Val	H-2-Kb	9	11	1	VSRFNLAHL	MSRFNLAHL	NetMHC	34.25	88.62	2.587	141	0.355	91.603	217.283	2.372	88.62	34.25	130.4	64.6	304.1655332	118.6069123	327.5291816	126.5464598	M2_p20	0.142857143	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.36	141	0	0	NA	7qA3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr6	134520435	134520435	A	C	ENSMUST00000032322.14	1	ENSMUSG00000030201	missense	L/R	203	Lrp6	ENSMUST00000032322.14:c.608T>G	ENSMUSP00000032322.8:p.Leu203Arg	H-2-Kb	9	11	1	RNFIHKSNL	LNFIHKSNL	NetMHCpan	24.8	15.1	0.609	206	0.17	96.035	60.832	0.633	39.77	43.78	15.1	24.8	87.5205423	148.2893631	81.893607	152.4930322	M2_p20	-0.042857143	-0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.18	206	0	0	NA	6qG1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.839036005	sgMsh2	cell line
chr7	25630422	25630422	G	T	ENSMUST00000205808.1	5	ENSMUSG00000060376	missense	P/H	92	Bckdha	ENSMUST00000205808.1:c.275C>A	ENSMUSP00000146018.1:p.Pro92His	H-2-Kb	9	10	5	RSWKHLSRL	RSWKPLSRL	NetMHCpan	40.3	284.5	7.06	33	0.212	90.509	379.431	4.192	202.73	43.85	284.5	40.3	474.3621186	146.9298381	571.8077009	137.1671136	M2_p20	-0.814285714	-0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.261	33	0	0	NA	7qA3	chr7-11669330-25950707	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr7	6461136	6461136	T	C	ENSMUST00000214301.2	5	ENSMUSG00000048620	missense	V/A	209	Olfr1336	ENSMUST00000214301.2:c.626T>C	ENSMUSP00000150162.1:p.Val209Ala	H-2-Kb	9	10	2	IAILWGSLL	IVILWGSLL	NetMHC	79.58	110.35	1.387	346	0.277	134.3	179.951	1.34	110.35	79.58	151.4	83.2	208.5018919	185.4001153	225.0349638	194.6480243	M2_p20	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.286	346	0	0	NA	7qA1	chr7-3895077-7214089	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr7	26611187	26611187	T	C	ENSMUST00000228367.1	NA	ENSMUSG00000091924	missense	M/V	298	Vmn1r185	ENSMUST00000228367.1:c.892A>G	ENSMUSP00000154816.1:p.Met298Val	H-2-Kb	9	3	9	VFMRSYSLV	VFMRSYSLM	NetMHC	86.79	66.95	0.771	141	0.355	195.423	101.978	0.522	66.95	86.79	103.7	265	100.2559138	171.4391481	132.8158787	219.4067579	M2_p20	0.357142857	0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.36	141	0	0	NA	7qA3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr6	141532679	141532679	A	G	ENSMUST00000032362.11	1	ENSMUSG00000030235	missense	K/R	56	Slco1c1	ENSMUST00000032362.11:c.167A>G	ENSMUSP00000032362.9:p.Lys56Arg	H-2-Kb	9	5	7	SFVYFARAL	SFVYFAKAL	NetMHC	90.76	210.98	2.325	153	0.17	303.576	377.92	1.245	210.98	90.76	211.2	119.5	544.6405843	487.6519891	802.1396792	782.0778752	M2_p20	1.228571429	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.154	153	0	0	NA	6qG2	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.717841915	sgMsh2	cell line
chr7	48168564	48168564	G	A	ENSMUST00000094389.3	NA	ENSMUSG00000070551	missense	T/I	141	Mrgprb5	ENSMUST00000094389.3:c.422C>T	ENSMUSP00000091953.2:p.Thr141Ile	H-2-Kb	9	11	1	ISSIMCALL	TSSIMCALL	NetMHC	113.71	370.36	3.257	255	0.204	227.739	520.976	2.288	370.36	113.71	533.5	148.4	647.3065476	377.6678362	508.4520469	307.0789168	M2_p20	2.5	2.5	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.209	255	0	0	NA	7qB4	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	0.974214028	sgMsh2	cell line
chr7	28306837	28306837	A	C	ENSMUST00000081946.4	1	ENSMUSG00000003438	missense	S/A	280	Timm50	ENSMUST00000081946.4:c.838T>G	ENSMUSP00000080614.4:p.Ser280Ala	H-2-Kb	9	11	1	AAFLKTIAL	SAFLKTIAL	NetMHCpan	86.6	50.7	0.585	25	0.2	140.151	83.48	0.596	70.33	130.64	50.7	86.6	96.62955956	149.6614677	117.8284053	161.1573064	M2_p20	1.728571429	1.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.211	25	0	0	NA	7qA3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	0.98353665	sgMsh2	cell line
chr7	4242170	4242170	A	T	ENSMUST00000117550.1	1	ENSMUSG00000070873	missense	H/L	271	Lilra5	ENSMUST00000117550.1:c.812A>T	ENSMUSP00000113091.1:p.His271Leu	H-2-Kb	9	3	9	GVLLFEAQL	GVLLFEAQH	NetMHC	142.43	16326.9	114.631	72	0.292	219.687	9512.661	43.301	16326.9	142.43	26282.3	380.7	2698.422814	224.9624328	2183.986754	214.4124503	M2_p20	1.285714286	1.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.293	72	0	0	NA	7qA1	chr7-3895077-7214089	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr7	26611187	26611187	T	C	ENSMUST00000228367.1	NA	ENSMUSG00000091924	missense	M/V	298	Vmn1r185	ENSMUST00000228367.1:c.892A>G	ENSMUSP00000154816.1:p.Met298Val	H-2-Kb	9	6	6	RSYSLVSRF	RSYSLMSRF	NetMHCpan	141.6	108.4	0.766	141	0.355	189.696	134.173	0.707	111.27	145.45	108.4	141.6	157.0760603	233.9429705	198.2668013	302.8656361	M2_p20	0.485714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.36	141	0	0	NA	7qA3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr7	44860083	44860083	A	T	ENSMUST00000003044.13	1	ENSMUSG00000002963	missense	I/F	214	Pnkp	ENSMUST00000003044.13:c.640A>T	ENSMUSP00000003044.7:p.Ile214Phe	H-2-Kb	9	10	2	VFFTNQMGI	VIFTNQMGI	NetMHC	224.67	173.98	0.774	120	0.25	495.62	287.013	0.579	173.98	224.67	171	466.3	400.0460623	524.9404026	441.8247089	598.7561676	M2_p20	0.157142857	0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.247	120	0	0	NA	7qB3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr7	55933103	55933103	G	A	ENSMUST00000119201.7	1	ENSMUSG00000030452	missense	A/V	298	Nipa2	ENSMUST00000119201.7:c.893C>T	ENSMUSP00000114020.1:p.Ala298Val	H-2-Kb	9	3	9	IVGIFLLHV	IVGIFLLHA	SMMPMBEC	293.934	1014.495	3.451	130	0.3	319.481	1799.346	5.632	2393.35	336.89	4122.3	831.1	1205.341196	302.0716724	1014.495208	293.9341186	M2_p20	2.214285714	3.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.301	130	0	0	NA	7qB5	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr6	134484391	134484391	T	G	ENSMUST00000032322.14	1	ENSMUSG00000030201	missense	E/A	701	Lrp6	ENSMUST00000032322.14:c.2102A>C	ENSMUSP00000032322.8:p.Glu701Ala	H-2-Kb	9	4	8	SALEHVVAF	SALEHVVEF	NetMHC	346.5	552.55	1.595	180	0.167	444.167	549.223	1.237	552.55	346.5	572.2	399.4	545.8961105	515.3591605	539.8212792	488.9337312	M2_p20	1.442857143	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.164	180	0	0	NA	6qG1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.764455027	sgMsh2	cell line
chr7	44254085	44254085	A	C	ENSMUST00000118216.7	5	ENSMUSG00000012777	missense	N/K	268	Acp4	ENSMUST00000118216.7:c.804T>G	ENSMUSP00000112922.2:p.Asn268Lys	H-2-Kb	9	7	5	AILSKFSRT	AILSNFSRT	NetMHC	418.06	803.44	1.922	70	0.257	445.515	906.399	2.034	803.44	418.06	3979.9	2331.4	857.254947	432.6233939	955.5424822	458.4056903	M2_p20	-0.585714286	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.276	70	0	0	NA	7qB3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr7	45897436	45897436	C	T	ENSMUST00000069772.15	1	ENSMUSG00000002781	missense	L/F	9	Tmem143	ENSMUST00000069772.15:c.25C>T	ENSMUSP00000070405.7:p.Leu9Phe	H-2-Kb	9	1	9	MTVARWLRF	MTVARWLRL	SMMPMBEC	346.937	200.563	0.578	60	0.367	447.198	172.436	0.386	144.31	476.98	90.6	447.6	264.9171047	446.7967444	200.5626226	346.9365057	M2_p20	0.385714286	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.351	60	0	0	NA	7qB3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr7	44254085	44254085	A	C	ENSMUST00000118216.7	5	ENSMUSG00000012777	missense	N/K	268	Acp4	ENSMUST00000118216.7:c.804T>G	ENSMUSP00000112922.2:p.Asn268Lys	H-2-Kb	9	10	2	SKFSRTQRL	SNFSRTQRL	SMM	201.888	42.965	0.213	70	0.257	379.864	47.397	0.125	51.83	504.31	22.5	880	42.96452354	201.8877649	57.8428922	255.4171179	M2_p20	-1.057142857	-1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.276	70	0	0	NA	7qB3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr7	81101095	81101095	T	C	ENSMUST00000107348.1	1	ENSMUSG00000038763	missense	W/R	1538	Alpk3	ENSMUST00000107348.1:c.4612T>C	ENSMUSP00000102971.1:p.Trp1538Arg	H-2-Db	9	9	3	YQRTNGSFL	YQWTNGSFL	NetMHCpan	123.2	26.5	0.215	68	0.324	312.704	56.356	0.18	8.22	131.53	26.5	123.2	91.33137583	493.878363	86.21245256	572.2291797	M2_p20	-0.471428571	-0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.348	68	0	0	NA	7qD3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr7	75610298	75610298	T	C	ENSMUST00000166315.6	5	ENSMUSG00000066406	missense	V/A	890	Akap13	ENSMUST00000166315.6:c.2669T>C	ENSMUSP00000129784.1:p.Val890Ala	H-2-Db	9	8	4	AALASDFTL	AALVSDFTL	NetMHC	178.78	109	0.61	162	0.333	209.324	125.966	0.602	109	178.78	175.4	258.9	114.9793899	202.5909309	136.9525112	216.0578251	M2_p20	1.028571429	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.337	162	0	0	NA	7qD1	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr7	114036656	114036656	TG	T	ENSMUST00000046687.15	1	ENSMUSG00000038156	FS	G/X	702	Spon1	ENSMUST00000046687.15:c.2108del	ENSMUSP00000041157.9:p.Gly703ValfsTer41	H-2-Db	9	24	0	AAPGNAFAA	NA	NetMHCpan	386.5	NA	NA	95	0.242	442.369	NA	NA	NA	522.35	NA	386.5	NA	417.4649324	NA	467.2722605	M2_p20	0.385714286	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.247	95	0	0	NA	7qF1	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr7	98498946	98498946	G	A	ENSMUST00000205956.1	5	ENSMUSG00000090958	missense	S/N	311	Lrrc32	ENSMUST00000205956.1:c.932G>A	ENSMUSP00000145859.1:p.Ser311Asn	H-2-Db	9	7	5	SRNANTHPL	SRNASTHPL	SMM	260.988	5292.002	20.277	55	0.364	495.676	9723.554	19.617	14057.34	711.73	14088.7	1830.8	5292.002004	260.9876759	5389.767112	279.6211387	M2_p20	-0.985714286	-0.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.416	55	0	0	NA	7qE1	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr7	66784798	66784798	T	C	ENSMUST00000066475.10	1	ENSMUSG00000030510	missense	W/R	216	Cers3	ENSMUST00000066475.10:c.646T>C	ENSMUSP00000069238.8:p.Trp216Arg	H-2-Kb	8	8	4	SQYRYYIL	SQYWYYIL	NetMHC	4.27	6.01	1.407	399	0.303	11.074	15.356	1.387	6.01	4.27	10.4	7.4	20.3114066	14.74823333	31.82291802	20.73671696	M2_p20	-0.514285714	-0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.316	399	0	0	NA	7qC	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr7	103612233	103612233	A	G	ENSMUST00000052152.2	NA	ENSMUSG00000045132	missense	V/A	40	Olfr620	ENSMUST00000052152.2:c.119T>C	ENSMUSP00000061764.1:p.Val40Ala	H-2-Kb	8	6	6	IIYVTAFL	IIYVTVFL	NetMHC	5.52	26.26	4.757	202	0.188	10.593	30.588	2.887	26.26	5.52	50.3	14.1	31.74972734	10.98348092	29.42659418	10.20328459	M2_p20	2.157142857	2.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.19	202	0	0	NA	7qE3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	0.885649116	sgMsh2	cell line
chr7	99667112	99667112	T	C	ENSMUST00000107088.7	1	ENSMUSG00000030737	missense	T/A	404	Slco2b1	ENSMUST00000107088.7:c.1210A>G	ENSMUSP00000102703.1:p.Thr404Ala	H-2-Kb	8	10	2	IAASFANM	ITASFANM	NetMHC	5.86	5.92	1.01	43	0.279	17.404	13.8	0.793	5.92	5.86	10.9	9	16.70090478	25.80714726	19.75786438	31.24208431	M2_p20	0.828571429	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.281	43	0	0	NA	7qE1	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr7	108255891	108255891	TG	T	ENSMUST00000211508.2	3	ENSMUSG00000096465	FS	P/X	82	Olfr488	ENSMUST00000211508.2:c.246del	ENSMUSP00000147652.2:p.Ser83ValfsTer71	H-2-Kb	8	29	0	VAFSSAQL	NA	NetMHC	10.24	NA	NA	364	0.286	18.332	NA	NA	NA	10.24	NA	16.4	NA	20.26469166	NA	21.56453014	M2_p20	0.728571429	0.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.294	364	0	0	NA	7qE3	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr7	102900565	102900565	T	C	ENSMUST00000209778.2	5	ENSMUSG00000073964	missense	M/T	66	Olfr570	ENSMUST00000209778.2:c.197T>C	ENSMUSP00000148181.2:p.Met66Thr	H-2-Kb	8	10	2	STLAFSDL	SMLAFSDL	NetMHC	12.15	11.91	0.98	204	0.152	27.533	42.234	1.534	11.91	12.15	24.8	22.2	59.66779652	32.86548155	70.42713151	39.15074224	M2_p20	1.028571429	1.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.175	204	0	0	NA	7qE3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	0.815729449	sgMsh2	cell line
chr7	103418430	103418430	T	C	ENSMUST00000079348.3	1	ENSMUSG00000058976	missense	Y/H	311	Usp17lc	ENSMUST00000079348.3:c.931T>C	ENSMUSP00000078323.3:p.Tyr311His	H-2-Kb	8	5	7	SGHYFSHV	SGHYFSYV	NetMHC	20.67	24.69	1.194	634	0.021	100.495	100.585	1.001	24.69	20.67	47.8	51.8	158.3944645	165.8593656	153.3698525	149.1900983	M2_p20	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.027	634	0	0	NA	7qE3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	0.125855401	sgMsh2	cell line
chr7	108066532	108066532	T	C	ENSMUST00000071658.2	NA	ENSMUSG00000063120	missense	M/V	89	Olfr480	ENSMUST00000071658.2:c.265A>G	ENSMUSP00000071583.2:p.Met89Val	H-2-Kb	8	11	1	VYLFLSHL	MYLFLSHL	NetMHCpan	13.1	28.9	2.206	221	0.244	134.327	287.934	2.144	52.58	23.33	28.9	13.1	523.2870654	245.323979	556.8522772	262.8693795	M2_p20	1.271428571	1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.243	221	0	0	NA	7qE3	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr7	110887999	110887999	G	A	ENSMUST00000125758.7	2	ENSMUSG00000005611	missense	A/V	714	Mrvi1	ENSMUST00000125758.7:c.2141C>T	ENSMUSP00000114578.1:p.Ala714Val	H-2-Kb	8	5	7	VVPKFNVL	VVPKFNAL	NetMHC	29.47	7.66	0.26	72	0.25	69.005	31.826	0.461	7.66	29.47	29	56.4	34.65293309	81.60936526	44.53895263	100.1705365	M2_p20	0.857142857	0.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.266	72	0	0	NA	7qE3	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr7	108367789	108367789	T	C	ENSMUST00000209743.1	3	ENSMUSG00000109631	missense	C/R	100	Olfr494	ENSMUST00000209743.1:c.298T>C	ENSMUSP00000148063.1:p.Cys100Arg	H-2-Kb	8	6	6	ISYIARSI	ISYIACSI	NetMHCpan	37.5	30.8	0.821	453	0.366	74.137	81.522	1.1	50.91	45.77	30.8	37.5	112.1346934	102.5038081	116.3429308	105.3755853	M2_p20	0.485714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.366	453	0	0	NA	7qE3	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr7	108031681	108031681	A	G	ENSMUST00000210173.2	3	ENSMUSG00000094426	missense	Y/H	221	Olfr478	ENSMUST00000210173.2:c.661T>C	ENSMUSP00000147713.1:p.Tyr221His	H-2-Kb	8	9	3	ISHIYILI	ISYIYILI	NetMHCpan	32.1	7	0.218	551	0.33	78.835	8.59	0.109	4.24	53.98	7	32.1	10.56185011	124.3769779	10.17981768	103.6907462	M2_p20	1.714285714	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.325	551	0	0	NA	7qE3	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr7	102927910	102927910	T	A	ENSMUST00000215782.2	5	ENSMUSG00000073963	missense	I/N	94	Olfr572	ENSMUST00000215782.2:c.281T>A	ENSMUSP00000149174.1:p.Ile94Asn	H-2-Kb	8	6	6	FNYKFNTF	FNYKFITF	NetMHCpan	50.8	48.2	0.949	200	0.265	130.321	119.91	0.92	86.45	77.52	48.2	50.8	158.0301673	183.1217795	153.3698525	187.8192059	M2_p20	-1.042857143	-1.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.256	200	0	0	NA	7qE3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr7	108255891	108255891	TG	T	ENSMUST00000211508.2	3	ENSMUSG00000096465	FS	P/X	82	Olfr488	ENSMUST00000211508.2:c.246del	ENSMUSP00000147652.2:p.Ser83ValfsTer71	H-2-Kb	8	44	0	ASFWLSWL	NA	NetMHCpan	61.6	NA	NA	364	0.286	78.758	NA	NA	NA	93.36	NA	61.6	NA	74.77217263	NA	82.74466462	M2_p20	1	1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.294	364	0	0	NA	7qE3	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr7	102900565	102900565	T	C	ENSMUST00000209778.2	5	ENSMUSG00000073964	missense	M/T	66	Olfr570	ENSMUST00000209778.2:c.197T>C	ENSMUSP00000148181.2:p.Met66Thr	H-2-Kb	8	5	7	MYYFLSTL	MYYFLSML	NetMHCpan	26.3	38.9	1.479	204	0.152	130.368	114.031	0.875	94.79	109.47	38.9	26.3	133.2723329	151.2655393	160.228586	179.7794304	M2_p20	0.9	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.175	204	0	0	NA	7qE3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	0.815729449	sgMsh2	cell line
chr7	127905762	127905762	T	C	ENSMUST00000071056.13	1	ENSMUSG00000030802	missense	I/T	130	Bckdk	ENSMUST00000071056.13:c.389T>C	ENSMUSP00000070345.7:p.Ile130Thr	H-2-Kb	8	10	2	YTRAFQKL	YIRAFQKL	NetMHCpan	121.7	137.9	1.133	182	0.242	139.122	142.352	1.023	95.73	131.44	137.9	121.7	146.8047136	146.8047136	188.2521739	180.6092545	M2_p20	-0.6	-0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.248	182	0	0	NA	7qF3	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr7	105555462	105555462	AC	A	ENSMUST00000046983.9	1	ENSMUSG00000037049	FS	P/X	183	Smpd1	ENSMUST00000046983.9:c.551del	ENSMUSP00000042187.8:p.Pro184GlnfsTer72	H-2-Kb	8	47	0	VQIHFAAA	NA	SMMPMBEC	150.918	NA	NA	90	0.311	175.233	NA	NA	NA	165.65	NA	488.7	NA	184.8161845	NA	150.9176382	M2_p20	0.857142857	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.333	90	0	0	NA	7qE3	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr7	108171874	108171874	G	A	ENSMUST00000072035.3	NA	ENSMUSG00000096068	missense	P/L	290	Olfr486	ENSMUST00000072035.3:c.869C>T	ENSMUSP00000071918.3:p.Pro290Leu	H-2-Kb	8	5	7	VIPVLNLL	VIPVLNPL	NetMHC	173.73	43.03	0.248	263	0.259	354.134	130.801	0.369	43.03	173.73	146.4	422.9	115.8083836	306.71852	145.794117	401.5503419	M2_p20	2.142857143	2.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.263	263	0	0	NA	7qE3	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr7	108031681	108031681	A	G	ENSMUST00000210173.2	3	ENSMUSG00000094426	missense	Y/H	221	Olfr478	ENSMUST00000210173.2:c.661T>C	ENSMUSP00000147713.1:p.Tyr221His	H-2-Kb	8	7	5	IAISHIYI	IAISYIYI	NetMHCpan	132.8	22.8	0.172	551	0.33	294.664	57.982	0.197	28.92	212.85	22.8	132.8	99.25216755	384.3616066	87.04423244	376.4783444	M2_p20	1.428571429	1.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.325	551	0	0	NA	7qE3	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr7	91940074	91940074	T	A	ENSMUST00000107196.9	1	ENSMUSG00000052572	missense	I/N	227	Dlg2	ENSMUST00000107196.9:c.680T>A	ENSMUSP00000102814.2:p.Ile227Asn	H-2-Kb	8	5	7	SIYVTKNI	SIYVTKII	NetMHC	242.01	2437.57	10.072	177	0.339	286.831	2390.198	8.333	2437.57	242.01	1637.8	259.8	2481.646968	364.5356443	2342.825811	313.8629122	M2_p20	0.542857143	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.348	177	0	0	NA	7qE1	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr7	105555462	105555462	AC	A	ENSMUST00000046983.9	1	ENSMUSG00000037049	FS	P/X	183	Smpd1	ENSMUST00000046983.9:c.551del	ENSMUSP00000042187.8:p.Pro184GlnfsTer72	H-2-Kb	8	38	0	STWRAQTL	NA	NetMHCpan	140.5	NA	NA	90	0.311	249.349	NA	NA	NA	259.51	NA	140.5	NA	239.1883374	NA	262.2647967	M2_p20	-0.671428571	-0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.333	90	0	0	NA	7qE3	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr7	108714066	108714066	C	A	ENSMUST00000074730.3	NA	ENSMUSG00000056946	missense	L/M	238	Olfr512	ENSMUST00000074730.3:c.712C>A	ENSMUSP00000074291.4:p.Leu238Met	H-2-Kb	8	6	6	ILFTIMRM	ILFTILRM	NetMHCpan	74.1	112.6	1.52	341	0.255	290.124	605.685	2.088	729.71	264.21	112.6	74.1	758.1235717	462.1042896	481.6593553	316.0385059	M2_p20	1.385714286	1.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.254	341	0	0	NA	7qE3	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr7	100503182	100503182	A	G	ENSMUST00000207405.1	1	ENSMUSG00000030708	missense	M/T	309	Dnajb13	ENSMUST00000207405.1:c.926T>C	ENSMUSP00000147019.1:p.Met309Thr	H-2-Kb	8	13	2	QTLRQALL	QMLRQALL	SMM	286.906	520.883	1.816	47	0.362	461.754	706.441	1.53	350.19	416.82	892	1408.6	520.8827797	286.906244	911.4650073	506.6872779	M2_p20	0.642857143	0.642857143	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.325	47	0	0	NA	7qE2	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr7	108066532	108066532	T	C	ENSMUST00000071658.2	NA	ENSMUSG00000063120	missense	M/V	89	Olfr480	ENSMUST00000071658.2:c.265A>G	ENSMUSP00000071583.2:p.Met89Val	H-2-Kb	8	8	4	HTPVYLFL	HTPMYLFL	NetMHCpan	245.7	219.6	0.894	221	0.244	262.002	292.515	1.116	407.26	463.94	219.6	245.7	316.0385059	266.5262568	268.9923939	257.4779247	M2_p20	1.571428571	1.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.243	221	0	0	NA	7qE3	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr7	119694675	119694675	A	G	ENSMUST00000047045.9	1	ENSMUSG00000047026	missense	S/G	90	Acsm4	ENSMUST00000047045.9:c.268A>G	ENSMUSP00000045160.8:p.Ser90Gly	H-2-Kb	8	8	4	VKWGFQEL	VKWSFQEL	SMM	227.374	98.796	0.435	63	0.079	401.828	109.094	0.271	115.92	566.66	200	598.2	98.79614526	227.3735801	102.2680559	236.9954455	M2_p20	-0.8	-0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.115	63	0	0	NA	7qF2	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	0.536050781	sgMsh2	cell line
chr7	86811337	86811337	G	A	ENSMUST00000164996.1	5	ENSMUSG00000090949	missense	V/I	624	Vmn2r77	ENSMUST00000164996.1:c.1870G>A	ENSMUSP00000129540.1:p.Val624Ile	H-2-Kb	8	6	6	ETLSYILL	ETLSYVLL	SMMPMBEC	299.737	258.071	0.861	383	0.303	438.719	380.319	0.867	864.89	988.22	444.6	532.5	316.0385059	344.9371732	258.0714726	299.7367541	M2_p20	1.871428571	1.871428571	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.309	383	0	0	NA	7qD3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr7	103212255	103212255	G	T	ENSMUST00000098206.1	NA	ENSMUSG00000073955	missense	A/S	132	Olfr593	ENSMUST00000098206.1:c.394G>T	ENSMUSP00000095807.1:p.Ala132Ser	H-2-Kb	9	10	2	MSFDRYVAI	MAFDRYVAI	NetMHCpan	12.3	20	1.626	358	0.344	33.946	48.846	1.439	47.08	27.69	20	12.3	63.11171763	52.01277201	50.61159219	40.20221668	M2_p20	0.571428571	0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.346	358	0	0	NA	7qE3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr7	86811337	86811337	G	A	ENSMUST00000164996.1	5	ENSMUSG00000090949	missense	V/I	624	Vmn2r77	ENSMUST00000164996.1:c.1870G>A	ENSMUSP00000129540.1:p.Val624Ile	H-2-Kb	9	8	4	LSYILLTSL	LSYVLLTSL	NetMHCpan	26.5	23.3	0.879	383	0.303	55.636	50.423	0.906	24.09	28.24	23.3	26.5	76.75558746	92.92017092	84.382036	83.03286055	M2_p20	1.871428571	1.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.309	383	0	0	NA	7qD3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr7	108066532	108066532	T	C	ENSMUST00000071658.2	NA	ENSMUSG00000063120	missense	M/V	89	Olfr480	ENSMUST00000071658.2:c.265A>G	ENSMUSP00000071583.2:p.Met89Val	H-2-Kb	9	10	2	PVYLFLSHL	PMYLFLSHL	SMM	27.74	12.797	0.461	221	0.244	31.825	25.891	0.814	28.38	30.85	39.4	32.8	12.79705392	27.74022632	23.40183969	47.56089297	M2_p20	1.271428571	1.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.243	221	0	0	NA	7qE3	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr7	99667112	99667112	T	C	ENSMUST00000107088.7	1	ENSMUSG00000030737	missense	T/A	404	Slco2b1	ENSMUST00000107088.7:c.1210A>G	ENSMUSP00000102703.1:p.Thr404Ala	H-2-Kb	9	10	2	IAASFANML	ITASFANML	NetMHC	49.5	59.95	1.211	43	0.279	106.089	142.925	1.347	59.95	49.5	72	56.9	213.850367	155.2780255	358.3026333	277.4917016	M2_p20	1.114285714	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.281	43	0	0	NA	7qE1	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr7	102900565	102900565	T	C	ENSMUST00000209778.2	5	ENSMUSG00000073964	missense	M/T	66	Olfr570	ENSMUST00000209778.2:c.197T>C	ENSMUSP00000148181.2:p.Met66Thr	H-2-Kb	9	4	8	PMYYFLSTL	PMYYFLSML	SMM	16.638	14.425	0.867	204	0.152	41.269	37.213	0.902	49.06	51.92	79.3	51.9	14.42480663	16.6383402	25.36588388	30.63726549	M2_p20	0.9	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.175	204	0	0	NA	7qE3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	0.815729449	sgMsh2	cell line
chr7	99667112	99667112	T	C	ENSMUST00000107088.7	1	ENSMUSG00000030737	missense	T/A	404	Slco2b1	ENSMUST00000107088.7:c.1210A>G	ENSMUSP00000102703.1:p.Thr404Ala	H-2-Kb	9	9	3	SIAASFANM	SITASFANM	NetMHC	52.64	67.03	1.273	43	0.279	261.476	391.398	1.497	67.03	52.64	142.9	83.3	639.8968908	439.6529586	738.3291242	556.2243536	M2_p20	0.828571429	1.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.281	43	0	0	NA	7qE1	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr7	108255891	108255891	TG	T	ENSMUST00000211508.2	3	ENSMUSG00000096465	FS	P/X	82	Olfr488	ENSMUST00000211508.2:c.246del	ENSMUSP00000147652.2:p.Ser83ValfsTer71	H-2-Kb	9	29	0	VAFSSAQLL	NA	NetMHCpan	69.5	NA	NA	364	0.286	97.94	NA	NA	NA	78.09	NA	69.5	NA	117.790428	NA	204.7623004	M2_p20	1.014285714	1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.294	364	0	0	NA	7qE3	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr7	86230157	86230157	G	T	ENSMUST00000165771.1	5	ENSMUSG00000091239	missense	L/I	312	Vmn2r76	ENSMUST00000165771.1:c.934C>A	ENSMUSP00000127309.1:p.Leu312Ile	H-2-Kb	9	11	1	IFNSFHGTL	LFNSFHGTL	NetMHC	90.6	323.06	3.566	128	0.344	213.074	517.132	2.427	323.06	90.6	536.4	171.4	497.86317	254.7475407	565.2622723	289.2344371	M2_p20	-0.285714286	0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.333	128	0	0	NA	7qD3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr7	103418430	103418430	T	C	ENSMUST00000079348.3	1	ENSMUSG00000058976	missense	Y/H	311	Usp17lc	ENSMUST00000079348.3:c.931T>C	ENSMUSP00000078323.3:p.Tyr311His	H-2-Kb	9	4	8	HSGHYFSHV	HSGHYFSYV	NetMHC	167.05	228.52	1.368	634	0.021	335.517	358.269	1.068	228.52	167.05	499.5	452.5	354.0870144	339.7113053	362.4515823	331.3217908	M2_p20	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.027	634	0	0	NA	7qE3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	0.125855401	sgMsh2	cell line
chr7	108031681	108031681	A	G	ENSMUST00000210173.2	3	ENSMUSG00000094426	missense	Y/H	221	Olfr478	ENSMUST00000210173.2:c.661T>C	ENSMUSP00000147713.1:p.Tyr221His	H-2-Kb	9	7	5	IAISHIYIL	IAISYIYIL	NetMHCpan	89.6	39.6	0.442	551	0.33	172.099	112.772	0.655	92.77	178.58	39.6	89.6	132.7730709	165.6189397	178.3405083	224.0010221	M2_p20	1.714285714	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.325	551	0	0	NA	7qE3	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr7	66784798	66784798	T	C	ENSMUST00000066475.10	1	ENSMUSG00000030510	missense	W/R	216	Cers3	ENSMUST00000066475.10:c.646T>C	ENSMUSP00000069238.8:p.Trp216Arg	H-2-Kb	9	8	4	SQYRYYILE	SQYWYYILE	SMM	92.493	70.325	0.76	399	0.303	160.502	195.895	1.221	314.3	217.43	396.3	364.7	70.32504197	92.49324152	77.49077422	103.5738214	M2_p20	-0.514285714	-0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.316	399	0	0	NA	7qC	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr7	138229856	138229856	A	G	ENSMUST00000160436.1	5	ENSMUSG00000091002	missense	M/T	464	Tcerg1l	ENSMUST00000160436.1:c.1391T>C	ENSMUSP00000124476.1:p.Met464Thr	H-2-Kb	9	5	7	VTHFRDTLL	VTHFRDMLL	SMMPMBEC	144.295	160.048	1.109	56	0.179	193.254	171.84	0.889	177.68	224.66	340.6	468.5	166.0007308	161.8489924	160.0479073	144.2945739	M2_p20	-0.214285714	-0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.194	56	0	0	NA	7qF4	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	0.904294361	sgMsh2	cell line
chr7	110442353	110442353	A	C	ENSMUST00000033058.13	5	ENSMUSG00000038371	missense	D/E	330	Sbf2	ENSMUST00000033058.13:c.990T>G	ENSMUSP00000033058.7:p.Asp330Glu	H-2-Kb	9	4	8	LSLILHPEL	LSLILHPDL	NetMHCpan	235.9	550	2.331	114	0.053	307.533	519.467	1.689	486.63	261.68	550	235.9	771.0987516	436.6264089	488.9337312	353.3865369	M2_p20	1.085714286	1.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.066	114	0	0	NA	7qE3	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	0.307646535	sgMsh2	cell line
chr7	108317521	108317521	T	C	ENSMUST00000214605.1	2	ENSMUSG00000094612	missense	V/A	209	Olfr491	ENSMUST00000214605.1:c.626T>C	ENSMUSP00000150694.1:p.Val209Ala	H-2-Kb	9	10	2	VATVFVISV	VVTVFVISV	NetMHC	342.27	467.62	1.366	534	0.298	395.11	553.012	1.4	467.62	342.27	735.6	356.6	487.6519891	433.6206938	618.3722614	534.872168	M2_p20	2.628571429	3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.299	534	0	0	NA	7qE3	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr7	110887999	110887999	G	A	ENSMUST00000125758.7	2	ENSMUSG00000005611	missense	A/V	714	Mrvi1	ENSMUST00000125758.7:c.2141C>T	ENSMUSP00000114578.1:p.Ala714Val	H-2-Kb	9	4	8	AVVPKFNVL	AVVPKFNAL	NetMHCpan	258.2	124.9	0.484	72	0.25	385.49	203.081	0.527	106.75	392.32	124.9	258.2	281.2613131	396.378418	305.6680173	378.6604965	M2_p20	0.857142857	0.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.266	72	0	0	NA	7qE3	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr7	81348426	81348426	T	A	ENSMUST00000178892.2	1	ENSMUSG00000025586	missense	Y/F	535	Cpeb1	ENSMUST00000178892.2:c.1604A>T	ENSMUSP00000137079.1:p.Tyr535Phe	H-2-Kb	9	7	5	VCFKFFCRS	VCFKYFCRS	SMM	96.407	118.607	1.23	44	0.273	202.811	222.153	1.095	822.05	618.66	325.7	298.9	118.6069123	96.40731774	113.5664369	106.721028	M2_p20	0.242857143	1.957142857	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.322	44	0	0	NA	7qD3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr7	108255891	108255891	TG	T	ENSMUST00000211508.2	3	ENSMUSG00000096465	FS	P/X	82	Olfr488	ENSMUST00000211508.2:c.246del	ENSMUSP00000147652.2:p.Ser83ValfsTer71	H-2-Kb	9	44	0	ASFWLSWLM	NA	SMM	308.397	NA	NA	364	0.286	329.927	NA	NA	NA	811.7	NA	308.9	NA	308.3968972	NA	350.9538411	M2_p20	1.385714286	1.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.294	364	0	0	NA	7qE3	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr8	13576361	13576361	T	C	ENSMUST00000117551.3	1	ENSMUSG00000031453	missense	M/V	741	Rasa3	ENSMUST00000117551.3:c.2221A>G	ENSMUSP00000112998.2:p.Met741Val	H-2-Db	9	4	8	YSLFNLYVG	YSLFNLYMG	NetMHC	87.93	363.82	4.138	200	0.16	182.548	418.279	2.291	363.82	87.93	556	201.2	472.737441	298.2771604	313.0184957	163.896621	M2_p20	1.342857143	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.166	200	0	0	NA	8qA1.1	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.773777649	sgMsh2	cell line
chr8	109551631	109551631	C	T	ENSMUST00000042601.8	1	ENSMUSG00000037993	missense	D/N	1138	Dhx38	ENSMUST00000042601.8:c.3412G>A	ENSMUSP00000047865.7:p.Asp1138Asn	H-2-Db	9	7	5	VTAVNGEWL	VTAVDGEWL	NetMHC	127.35	8821.39	69.269	197	0.142	384.136	9938.338	25.872	8821.39	127.35	6722.3	173.2	12723.89276	660.1156057	11055.28645	595.0726634	M2_p20	0.214285714	0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.157	197	0	0	NA	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.731825849	sgMsh2	cell line
chr8	92972891	92972891	GC	G	ENSMUST00000072939.7	1	ENSMUSG00000055368	FS	S/X	182	Slc6a2	ENSMUST00000072939.7:c.549del	ENSMUSP00000072709.6:p.Asn184ThrfsTer58	H-2-Db	9	35	0	SSHQLRSFM	NA	NetMHC	153.91	NA	NA	222	0.541	396.446	NA	NA	NA	153.91	NA	2001.2	NA	282.8915661	NA	509.9997932	M2_p20	-0.5	-0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.535	222	0	0	NA	8qC5	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	3	1	sgMsh2	cell line
chr7	144603591	144603591	T	C	ENSMUST00000121758.7	1	ENSMUSG00000031075	missense	I/V	765	Ano1	ENSMUST00000121758.7:c.2293A>G	ENSMUSP00000112616.2:p.Ile765Val	H-2-Kb	8	11	1	VQFGFVTL	IQFGFVTL	NetMHCpan	12.3	13.6	1.106	122	0.205	15.033	16.24	1.08	16.53	14.3	13.6	12.3	16.81666993	15.7666708	15.94924025	16.35836898	M2_p20	1.285714286	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.205	122	0	0	NA	7qF5	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	0.955568784	sgMsh2	cell line
chr8	71579598	71579598	G	A	ENSMUST00000034267.4	1	ENSMUSG00000031808	missense	R/H	121	Slc27a1	ENSMUST00000034267.4:c.362G>A	ENSMUSP00000034267.4:p.Arg121His	H-2-Kb	8	6	6	VANLFHQL	VANLFRQL	NetMHC	24.07	13.87	0.576	120	0.308	28.734	25.693	0.894	13.87	24.07	34.8	29.6	25.21970487	27.97306149	26.16616044	29.49442949	M2_p20	0.285714286	0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.312	120	0	0	NA	8qB3.3	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr8	33294983	33294983	G	C	ENSMUST00000033991.12	5	ENSMUSG00000031583	missense	P/A	697	Wrn	ENSMUST00000033991.12:c.2089C>G	ENSMUSP00000033991.6:p.Pro697Ala	H-2-Kb	8	6	6	TGFDRANL	TGFDRPNL	NetMHCpan	59.8	179	2.993	143	0.077	81.778	278.452	3.405	633.89	90.72	179	59.8	276.528565	85.25895396	280.3754606	78.29607656	M2_p20	-0.5	-0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.08	143	0	0	NA	8qA3	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.372904891	sgMsh2	cell line
chr8	56110553	56110553	A	G	ENSMUST00000000275.8	1	ENSMUSG00000038257	missense	K/R	361	Glra3	ENSMUST00000000275.8:c.1082A>G	ENSMUSP00000000275.7:p.Lys361Arg	H-2-Kb	8	6	6	VSRQHREL	VSRQHKEL	SMM	69.621	143.794	2.065	321	0.15	100.959	250.036	2.477	322.76	105.37	1502.7	872.9	143.7937467	69.6209588	177.3127641	96.54727043	M2_p20	-2.314285714	-2.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.158	321	0	0	NA	8qB2	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.73648716	sgMsh2	cell line
chr7	144603591	144603591	T	C	ENSMUST00000121758.7	1	ENSMUSG00000031075	missense	I/V	765	Ano1	ENSMUST00000121758.7:c.2293A>G	ENSMUSP00000112616.2:p.Ile765Val	H-2-Kb	8	9	3	MIVQFGFV	MIIQFGFV	SMM	97.89	51.255	0.524	122	0.205	130.301	62.325	0.478	67.14	154.74	188.1	422.5	51.25544401	97.89037676	57.50955406	105.8619769	M2_p20	2.085714286	2.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.205	122	0	0	NA	7qF5	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	0.955568784	sgMsh2	cell line
chr8	83725234	83725234	A	G	ENSMUST00000075843.12	1	ENSMUSG00000002885	missense	M/T	563	Adgre5	ENSMUST00000075843.12:c.1688T>C	ENSMUSP00000075240.6:p.Met563Thr	H-2-Kb	8	7	5	SSRTTVHL	SSRTMVHL	SMMPMBEC	310.27	134.196	0.433	247	0.543	344.132	130.589	0.379	73.79	367.09	280.6	1261.9	126.9813676	321.1737185	134.1961326	310.2701531	M2_p20	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.539	247	0	0	NA	8qC2	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	3	1	sgMsh2	cell line
chr8	109909142	109909142	A	G	ENSMUST00000179721.7	1	ENSMUSG00000031732	missense	N/S	314	Phlpp2	ENSMUST00000179721.7:c.941A>G	ENSMUSP00000136166.1:p.Asn314Ser	H-2-Kb	8	6	6	LNLRHSFM	LNLRHNFM	NetMHCpan	252	589.6	2.34	137	0.088	404.262	731.608	1.81	1192.87	405.12	589.6	252	652.7396586	403.403814	810.4757034	469.6128803	M2_p20	-0.5	-0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.097	137	0	0	NA	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.452147181	sgMsh2	cell line
chr8	22217138	22217138	G	T	ENSMUST00000033866.8	1	ENSMUSG00000031479	missense	D/Y	307	Vps36	ENSMUST00000033866.8:c.919G>T	ENSMUSP00000033866.8:p.Asp307Tyr	H-2-Kb	8	9	3	VFYSGVMV	VFDSGVMV	SMM	315.312	10226.806	32.434	231	0.147	381.848	9896.509	25.917	8057.27	443.26	14632	856.5	10226.80559	315.3116375	9566.211974	320.4350395	M2_p20	1.514285714	1.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.158	231	0	0	NA	8qA2	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.73648716	sgMsh2	cell line
chr8	4214160	4214160	G	A	ENSMUST00000168386.8	5	ENSMUSG00000064125	missense	T/M	502	Prr36	ENSMUST00000168386.8:c.1505C>T	ENSMUSP00000133114.2:p.Thr502Met	H-2-Kb	9	7	5	TSLVMSSQL	TSLVTSSQL	NetMHC	88.56	251.51	2.84	142	0.169	195.96	406.946	2.077	251.51	88.56	732	219.9	356.5414284	186.6852475	457.3513865	205.2343263	M2_p20	1.228571429	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.182	142	0	0	NA	8qA1.1	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.848358627	sgMsh2	cell line
chr7	144603591	144603591	T	C	ENSMUST00000121758.7	1	ENSMUSG00000031075	missense	I/V	765	Ano1	ENSMUST00000121758.7:c.2293A>G	ENSMUSP00000112616.2:p.Ile765Val	H-2-Kb	9	11	1	VQFGFVTLF	IQFGFVTLF	NetMHCpan	81.3	89.2	1.097	122	0.205	108.77	147.285	1.354	110.87	92.77	89.2	81.3	183.7003569	124.7699497	193.3080768	145.9654263	M2_p20	2.185714286	2.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.205	122	0	0	NA	7qF5	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	0.955568784	sgMsh2	cell line
chr8	22217138	22217138	G	T	ENSMUST00000033866.8	1	ENSMUSG00000031479	missense	D/Y	307	Vps36	ENSMUST00000033866.8:c.919G>T	ENSMUSP00000033866.8:p.Asp307Tyr	H-2-Kb	9	6	6	RLRVFYSGV	RLRVFDSGV	NetMHC	95.6	3345.4	34.994	231	0.147	382.703	3535.223	9.238	3345.4	95.6	3602.2	227	3468.246846	538.4061351	4594.624246	743.4469772	M2_p20	0.6	0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.158	231	0	0	NA	8qA2	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.73648716	sgMsh2	cell line
chr8	109551631	109551631	C	T	ENSMUST00000042601.8	1	ENSMUSG00000037993	missense	D/N	1138	Dhx38	ENSMUST00000042601.8:c.3412G>A	ENSMUSP00000047865.7:p.Asp1138Asn	H-2-Kb	9	10	2	VNGEWLAEL	VDGEWLAEL	NetMHC	116.53	3630.39	31.154	197	0.142	130.917	2132.941	16.292	3630.39	116.53	5738.1	292.5	635.4918716	125.9244318	562.6651281	135.909558	M2_p20	0.157142857	0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.157	197	0	0	NA	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.731825849	sgMsh2	cell line
chr8	71579598	71579598	G	A	ENSMUST00000034267.4	1	ENSMUSG00000031808	missense	R/H	121	Slc27a1	ENSMUST00000034267.4:c.362G>A	ENSMUSP00000034267.4:p.Arg121His	H-2-Kb	9	5	7	AVANLFHQL	AVANLFRQL	NetMHCpan	192.4	198.1	1.03	120	0.308	439.03	390.941	0.89	171.87	351.74	198.1	192.4	670.0543022	634.0302809	583.781059	526.3201534	M2_p20	0.285714286	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.312	120	0	0	NA	8qB3.3	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr8	56110553	56110553	A	G	ENSMUST00000000275.8	1	ENSMUSG00000038257	missense	K/R	361	Glra3	ENSMUST00000000275.8:c.1082A>G	ENSMUSP00000000275.7:p.Lys361Arg	H-2-Kb	9	6	6	VSRQHRELL	VSRQHKELL	SMM	223.414	253.577	1.135	321	0.15	294.719	447.137	1.517	629.88	360.22	1230.8	842.1	253.577082	223.4138023	264.3930288	229.2186762	M2_p20	-1.657142857	-1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.158	321	0	0	NA	8qB2	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.73648716	sgMsh2	cell line
chr8	105178615	105178615	A	T	ENSMUST00000052209.8	1	ENSMUSG00000031885	missense	N/I	63	Cbfb	ENSMUST00000052209.8:c.188A>T	ENSMUSP00000059382.2:p.Asn63Ile	H-2-Kb	9	3	9	IAFVATGTI	IAFVATGTN	NetMHCpan	147.4	7924.2	53.76	188	0.207	476.809	5159.061	10.82	13674.64	401.4	7924.2	147.4	2393.922023	552.2172896	1762.990613	624.0939895	M2_p20	1.642857143	2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.225	188	0	0	NA	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr8	71579598	71579598	G	A	ENSMUST00000034267.4	1	ENSMUSG00000031808	missense	R/H	121	Slc27a1	ENSMUST00000034267.4:c.362G>A	ENSMUSP00000034267.4:p.Arg121His	H-2-Kb	9	7	5	ANLFHQLGF	ANLFRQLGF	SMM	473.271	457.204	0.966	120	0.308	498.649	517.722	1.038	578.24	500.42	669.2	536.4	457.2039776	473.271116	452.1161284	496.8782653	M2_p20	0.871428571	0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.312	120	0	0	NA	8qB3.3	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr8	40335865	40335865	A	G	ENSMUST00000068999.13	5	ENSMUSG00000039478	missense	E/G	139	Micu3	ENSMUST00000068999.13:c.416A>G	ENSMUSP00000070241.7:p.Glu139Gly	H-2-Kb	9	8	4	TSRGRRFRL	TSRERRFRL	SMMPMBEC	242.242	242.242	1	380	0.018	444.741	347.007	0.78	441.02	628.2	1294.5	2074.6	252.9938709	261.2823058	242.2423104	242.2423104	M2_p20	-1.685714286	-1.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.026	380	0	0	NA	8qA4	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.12119409	sgMsh2	cell line
chr9	39319215	39319215	T	C	ENSMUST00000216132.1	5	ENSMUSG00000057349	missense	N/S	133	Olfr948	ENSMUST00000216132.1:c.398A>G	ENSMUSP00000149422.1:p.Asn133Ser	H-2-Db	9	10	2	YSVTMSYQI	YNVTMSYQI	NetMHC	117.25	2371.18	20.223	410	0.254	265.249	2246.64	8.47	2371.18	117.25	2122.1	218.2	2861.672961	426.2064325	1934.505639	312.2985731	M2_p20	0.614285714	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.245	410	0	0	NA	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr9	45942733	45942733	T	C	ENSMUST00000114573.8	1	ENSMUSG00000034908	missense	T/A	666	Sidt2	ENSMUST00000114573.8:c.1996A>G	ENSMUSP00000110220.2:p.Thr666Ala	H-2-Db	9	10	2	SALLLSTQL	STLLLSTQL	SMM	164.672	1070.582	6.501	116	0.198	292.842	2598.721	8.874	4086.81	391.34	5010.5	665.5	1070.582155	164.6720909	1110.631534	194.3434911	M2_p20	1.457142857	1.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.221	116	0	0	NA	9qA5.2	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr9	50581694	50581694	A	G	ENSMUST00000214117.1	1	ENSMUSG00000039217	missense	T/A	187	Il18	ENSMUST00000214117.1:c.559A>G	ENSMUSP00000151002.1:p.Thr187Ala	H-2-Kb	8	11	6	VMFTLANL	VMFTLTNL	NetMHC	3.29	6.48	1.97	124	0.266	4.722	10.446	2.212	6.48	3.29	5.6	4.4	14.41252256	5.043592613	15.83944645	5.429252	M2_p20	1.414285714	1.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.275	124	0	0	NA	9qA5.3	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr9	8649367	8649367	A	G	ENSMUST00000050433.7	1	ENSMUSG00000031997	missense	N/S	526	Trpc6	ENSMUST00000050433.7:c.1577A>G	ENSMUSP00000057965.6:p.Asn526Ser	H-2-Kb	8	11	1	SMLDFGML	NMLDFGML	NetMHC	15.62	345.87	22.143	225	0.031	42.779	364.674	8.525	345.87	15.62	326.9	25.2	383.4775994	60.35871704	403.403814	71.07878574	M2_p20	1.471428571	1.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.035	225	0	0	NA	9qA1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.16314589	sgMsh2	cell line
chr9	39593690	39593690	A	G	ENSMUST00000042485.10	1	ENSMUSG00000038112	missense	L/P	502	AW551984	ENSMUST00000042485.10:c.1505T>C	ENSMUSP00000042582.4:p.Leu502Pro	H-2-Kb	8	5	7	RLIIYSPL	RLIIYSLL	NetMHCpan	39.7	75.5	1.902	171	0.222	56.855	182.401	3.208	176.55	45.36	75.5	39.7	207.8452003	78.47656766	188.2521739	68.3502331	M2_p20	1.842857143	1.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.233	171	0	0	NA	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr8	124028933	124028933	T	C	ENSMUST00000034457.8	1	ENSMUSG00000031976	missense	Y/H	460	Urb2	ENSMUST00000034457.8:c.1378T>C	ENSMUSP00000034457.8:p.Tyr460His	H-2-Kb	8	7	5	VFQTHAKL	VFQTYAKL	SMM	70.915	18.312	0.258	219	0.16	106.19	20.473	0.193	16.15	114.49	51	301.1	18.31217795	70.91530907	22.63288934	97.89037676	M2_p20	-0.414285714	-0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.168	219	0	0	NA	8qE2	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.783100271	sgMsh2	cell line
chr9	39258136	39258136	A	C	ENSMUST00000076903.2	NA	ENSMUSG00000063380	missense	C/G	182	Olfr945	ENSMUST00000076903.2:c.544T>G	ENSMUSP00000076169.2:p.Cys182Gly	H-2-Kb	8	6	6	INHYFGDI	INHYFCDI	NetMHCpan	102	90.9	0.891	355	0.47	276.289	313.213	1.134	217.41	182.12	90.9	102	466.380088	456.8146256	409.0157201	370.458872	M2_p20	-0.657142857	-0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.475	355	0	0	NA	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr9	45942733	45942733	T	C	ENSMUST00000114573.8	1	ENSMUSG00000034908	missense	T/A	666	Sidt2	ENSMUST00000114573.8:c.1996A>G	ENSMUSP00000110220.2:p.Thr666Ala	H-2-Kb	8	5	7	VIHIISAL	VIHIISTL	NetMHCpan	153	145.8	0.953	116	0.198	240.715	409.752	1.702	376.16	199.76	145.8	153	518.4895408	311.7022951	443.3431473	281.6696149	M2_p20	2.157142857	2.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.221	116	0	0	NA	9qA5.2	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr9	38848204	38848204	C	T	ENSMUST00000217350.1	5	ENSMUSG00000062103	missense	A/V	30	Olfr924	ENSMUST00000217350.1:c.89C>T	ENSMUSP00000149849.1:p.Ala30Val	H-2-Kb	8	11	1	VIYVITVV	AIYVITVV	NetMHC	202.6	1252.59	6.183	309	0.259	217.935	913.276	4.191	1252.59	202.6	849.9	203.2	976.6523514	259.2626764	797.5170931	232.6697911	M2_p20	2.8	2.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.257	309	0	0	NA	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr9	39018999	39018999	G	T	ENSMUST00000214410.1	5	ENSMUSG00000058820	missense	L/I	181	Olfr146	ENSMUST00000214410.1:c.541C>A	ENSMUSP00000149294.1:p.Leu181Ile	H-2-Kb	8	4	8	INHYFCDI	INHYFCDL	NetMHCpan	90.9	29.4	0.323	255	0.216	313.213	50.321	0.161	26.98	217.41	29.4	90.9	71.90183929	466.380088	71.24263926	409.0157201	M2_p20	-0.242857143	-0.242857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.237	255	0	0	NA	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr9	45942733	45942733	T	C	ENSMUST00000114573.8	1	ENSMUSG00000034908	missense	T/A	666	Sidt2	ENSMUST00000114573.8:c.1996A>G	ENSMUSP00000110220.2:p.Thr666Ala	H-2-Kb	8	6	6	IHIISALL	IHIISTLL	NetMHCpan	194.5	468.9	2.411	116	0.198	249.005	811.688	3.26	824.02	218.28	468.9	194.5	799.3555598	279.7306149	947.8508415	324.8927349	M2_p20	2.057142857	2.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.221	116	0	0	NA	9qA5.2	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr9	21348598	21348598	C	T	ENSMUST00000034697.7	1	ENSMUSG00000057193	missense	P/L	634	Slc44a2	ENSMUST00000034697.7:c.1901C>T	ENSMUSP00000034697.7:p.Pro634Leu	H-2-Kb	8	4	8	IVQDTAPL	IVQDTAPP	SMMPMBEC	253.361	6572.642	25.942	269	0.23	303.163	17232.021	56.841	29403.32	342.85	27891.4	575.9	6378.8149	263.475356	6572.642338	253.3611374	M2_p20	0.071428571	0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.236	269	0	0	NA	9qA3	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr9	39185005	39185005	G	A	ENSMUST00000071617.5	3	ENSMUSG00000094970	missense	V/M	276	Olfr943	ENSMUST00000071617.5:c.826G>A	ENSMUSP00000071545.5:p.Val276Met	H-2-Kb	9	11	1	MSSVFYTTV	VSSVFYTTV	NetMHC	27.88	11.22	0.402	472	0.239	117.395	46.229	0.394	11.22	27.88	11.9	28.2	80.55824568	206.5903351	94.24319478	243.9214539	M2_p20	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.259	472	0	0	NA	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr9	41969739	41969739	T	G	ENSMUST00000060989.8	1	ENSMUSG00000049313	missense	K/T	2162	Sorl1	ENSMUST00000060989.8:c.6485A>C	ENSMUSP00000058613.8:p.Lys2162Thr	H-2-Kb	9	7	5	ILYTTHRRL	ILYTKHRRL	NetMHCpan	38.5	39.5	1.026	57	0.211	207.103	89.609	0.433	28.42	39.88	39.5	38.5	191.9154771	390.9399022	139.7172407	374.3260056	M2_p20	-1.585714286	-0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.21	57	0	0	NA	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.978875339	sgMsh2	cell line
chr9	50581694	50581694	A	G	ENSMUST00000214117.1	1	ENSMUSG00000039217	missense	T/A	187	Il18	ENSMUST00000214117.1:c.559A>G	ENSMUSP00000151002.1:p.Thr187Ala	H-2-Kb	9	10	7	SVMFTLANL	SVMFTLTNL	NetMHC	40.06	93.53	2.335	124	0.266	145.749	207.489	1.424	93.53	40.06	79.4	51	321.4474612	240.4971865	457.3513865	335.930936	M2_p20	1.414285714	1.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.275	124	0	0	NA	9qA5.3	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr9	39078200	39078200	A	G	ENSMUST00000056499.3	NA	ENSMUSG00000048501	missense	F/L	182	Olfr938	ENSMUST00000056499.3:c.544T>C	ENSMUSP00000055053.2:p.Phe182Leu	H-2-Kb	9	3	9	INHYFCDLL	INHYFCDLF	NetMHC	40.99	129.13	3.15	200	0.235	94.887	238.502	2.514	129.13	40.99	365.4	57	223.9288243	132.7730709	253.0754397	146.3019114	M2_p20	0.7	0.7	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	200	0	0	NA	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr8	124028933	124028933	T	C	ENSMUST00000034457.8	1	ENSMUSG00000031976	missense	Y/H	460	Urb2	ENSMUST00000034457.8:c.1378T>C	ENSMUSP00000034457.8:p.Tyr460His	H-2-Kb	9	6	6	TVFQTHAKL	TVFQTYAKL	NetMHC	42.12	10.72	0.255	219	0.16	141.749	43.932	0.31	10.72	42.12	14.2	48.4	86.71814915	303.4659719	73.66310144	235.0985768	M2_p20	-0.414285714	0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.168	219	0	0	NA	8qE2	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.783100271	sgMsh2	cell line
chr9	36747934	36747934	T	C	ENSMUST00000120381.8	1	ENSMUSG00000032116	missense	M/V	370	Stt3a	ENSMUST00000120381.8:c.1108A>G	ENSMUSP00000113116.1:p.Met370Val	H-2-Kb	9	8	4	LVFVFPVGL	LVFMFPVGL	NetMHCpan	32.6	24.8	0.761	65	0.123	75.98	83.74	1.102	45.27	48.18	24.8	32.6	122.2109162	103.7791239	127.4236379	133.428929	M2_p20	2.257142857	2.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.135	65	0	0	NA	9qA4	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.629277004	sgMsh2	cell line
chr9	45942733	45942733	T	C	ENSMUST00000114573.8	1	ENSMUSG00000034908	missense	T/A	666	Sidt2	ENSMUST00000114573.8:c.1996A>G	ENSMUSP00000110220.2:p.Thr666Ala	H-2-Kb	9	10	2	SALLLSTQL	STLLLSTQL	NetMHC	162.5	192.38	1.184	116	0.198	322.81	385.78	1.195	192.38	162.5	322.7	319.7	448.8590645	325.9192408	466.9280884	361.6179668	M2_p20	1.457142857	1.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.221	116	0	0	NA	9qA5.2	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr9	45942733	45942733	T	C	ENSMUST00000114573.8	1	ENSMUSG00000034908	missense	T/A	666	Sidt2	ENSMUST00000114573.8:c.1996A>G	ENSMUSP00000110220.2:p.Thr666Ala	H-2-Kb	9	5	7	VIHIISALL	VIHIISTLL	NetMHCpan	215.1	416.7	1.937	116	0.198	263.385	453.56	1.722	490.42	219.79	416.7	215.1	410.3080144	306.9799422	521.4948213	383.0451784	M2_p20	2.057142857	2.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.221	116	0	0	NA	9qA5.2	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr9	39623424	39623424	A	T	ENSMUST00000077060.2	NA	ENSMUSG00000059867	missense	Q/H	100	Olfr960	ENSMUST00000077060.2:c.300A>T	ENSMUSP00000076315.2:p.Gln100His	H-2-Kb	9	9	3	VVHHFFYHC	VVQHFFYHC	NetMHCpan	212.1	530.8	2.503	442	0.124	237.901	522.57	2.197	332.44	223.89	530.8	212.1	543.3879457	267.3683525	514.3396441	251.9126636	M2_p20	-0.4	0.9	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.135	442	0	0	NA	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.629277004	sgMsh2	cell line
chr9	39258136	39258136	A	C	ENSMUST00000076903.2	NA	ENSMUSG00000063380	missense	C/G	182	Olfr945	ENSMUST00000076903.2:c.544T>G	ENSMUSP00000076169.2:p.Cys182Gly	H-2-Kb	9	5	7	VINHYFGDI	VINHYFCDI	NetMHC	248.12	402.57	1.622	355	0.47	313.678	336.411	1.072	402.57	248.12	262.7	378.9	382.9217191	379.4110717	289.9011913	248.4562923	M2_p20	-0.657142857	0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.475	355	0	0	NA	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr9	39258136	39258136	A	C	ENSMUST00000076903.2	NA	ENSMUSG00000063380	missense	C/G	182	Olfr945	ENSMUST00000076903.2:c.544T>G	ENSMUSP00000076169.2:p.Cys182Gly	H-2-Kb	9	6	6	INHYFGDIL	INHYFCDIL	NetMHCpan	249.4	114.5	0.459	355	0.47	350.747	161.261	0.46	107.57	280.66	114.5	249.4	208.0223508	420.8332054	225.553723	456.2995075	M2_p20	0.385714286	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.475	355	0	0	NA	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	2	1	sgMsh2	cell line
chr9	40101259	40101259	G	A	ENSMUST00000213858.1	5	ENSMUSG00000045812	missense	T/I	77	Olfr984	ENSMUST00000213858.1:c.230C>T	ENSMUSP00000150545.1:p.Thr77Ile	H-2-Kb	9	11	1	IAPRMLVDL	TAPRMLVDL	NetMHCpan	306.8	1009.8	3.291	152	0.257	448.824	978.291	2.18	830.7	325.84	1009.8	306.8	1132.687219	660.8608125	946.7820161	571.8077009	M2_p20	0.585714286	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.258	152	0	0	NA	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr9	39018999	39018999	G	T	ENSMUST00000214410.1	5	ENSMUSG00000058820	missense	L/I	181	Olfr146	ENSMUST00000214410.1:c.541C>A	ENSMUSP00000149294.1:p.Leu181Ile	H-2-Kb	9	4	8	INHYFCDII	INHYFCDLI	NetMHC	329.69	127.26	0.386	255	0.216	436.374	256.697	0.588	127.26	329.69	183.7	356.2	329.6932077	516.547186	338.259498	521.4948213	M2_p20	0.9	0.9	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.237	255	0	0	NA	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr9	8649367	8649367	A	G	ENSMUST00000050433.7	1	ENSMUSG00000031997	missense	N/S	526	Trpc6	ENSMUST00000050433.7:c.1577A>G	ENSMUSP00000057965.6:p.Asn526Ser	H-2-Kb	9	5	7	YLFELWSML	YLFELWNML	NetMHCpan	173.4	337.4	1.946	225	0.031	366.133	484.882	1.324	491.96	335.76	337.4	173.4	518.9314595	453.0123063	477.8042407	396.5062159	M2_p20	1.014285714	1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.035	225	0	0	NA	9qA1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.16314589	sgMsh2	cell line
chr9	8649367	8649367	A	G	ENSMUST00000050433.7	1	ENSMUSG00000031997	missense	N/S	526	Trpc6	ENSMUST00000050433.7:c.1577A>G	ENSMUSP00000057965.6:p.Asn526Ser	H-2-Kb	9	10	2	WSMLDFGML	WNMLDFGML	NetMHC	353.67	508.92	1.439	225	0.031	425.439	535.86	1.26	508.92	353.67	562.8	444.2	635.4918716	597.1865254	452.1161284	406.6773641	M2_p20	1.471428571	1.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.035	225	0	0	NA	9qA1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.16314589	sgMsh2	cell line
chr9	39623424	39623424	A	T	ENSMUST00000077060.2	NA	ENSMUSG00000059867	missense	Q/H	100	Olfr960	ENSMUST00000077060.2:c.300A>T	ENSMUSP00000076315.2:p.Gln100His	H-2-Kb	9	10	2	VHHFFYHCI	VQHFFYHCI	NetMHCpan	90.4	63.8	0.706	442	0.124	173.716	227.024	1.307	350.13	363.05	63.8	90.4	236.6519024	183.2778578	217.3952246	164.1534444	M2_p20	0.7	0.7	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.135	442	0	0	NA	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.629277004	sgMsh2	cell line
chr9	43791318	43791318	A	G	ENSMUST00000034510.8	1	ENSMUSG00000032012	missense	M/V	121	Nectin1	ENSMUST00000034510.8:c.361A>G	ENSMUSP00000034510.7:p.Met121Val	H-2-Kb	9	11	1	VYICEFATF	MYICEFATF	SMM	270.464	693.601	2.564	117	0.282	347.49	830.945	2.391	915.58	403.74	908.1	406.8	693.6014622	270.4643321	753.7893549	291.2393144	M2_p20	1.457142857	1.571428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.303	117	0	0	NA	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr9	4296817	4296817	T	G	ENSMUST00000051589.8	1	ENSMUSG00000025894	missense	K/T	263	Aasdhppt	ENSMUST00000051589.8:c.788A>C	ENSMUSP00000053971.7:p.Lys263Thr	H-2-Kb	9	4	8	VSYQDDSTL	VSYQDDSKL	SMMPMBEC	164.532	163.023	0.991	70	0.129	411.806	603.657	1.466	967.37	634.33	1091.4	823.8	239.9440583	189.282298	163.0234201	164.5318572	M2_p20	-1.357142857	-1.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.143	70	0	0	NA	9qA1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.666567493	sgMsh2	cell line
chrX	66654167	66654167	C	T	ENSMUST00000166241.1	2	ENSMUSG00000036790	missense	A/V	88	Slitrk2	ENSMUST00000166241.1:c.263C>T	ENSMUSP00000130057.1:p.Ala88Val	H-2-Db	9	6	6	VNYSNVVTL	VNYSNAVTL	NetMHC	131.61	93.87	0.713	108	0.13	212.47	213.864	1.007	93.87	131.61	218.5	198.7	209.2280946	235.841376	224.6828893	226.2403167	M2_p20	0.842857143	0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.13	108	0	0	NA	XqA7.1	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	sgMsh2	cell line
chr9	79700292	79700292	A	G	ENSMUST00000071750.12	5	ENSMUSG00000032332	missense	V/A	418	Col12a1	ENSMUST00000071750.12:c.1253T>C	ENSMUSP00000071662.6:p.Val418Ala	H-2-Db	9	10	2	SAMEKTQPM	SVMEKTQPM	NetMHCpan	125.7	1248.9	9.936	224	0.228	175.26	1710.194	9.758	2771.11	136.91	1248.9	125.7	1366.53261	213.6092229	2053.856042	321.7881152	M2_p20	-1.342857143	-1.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	224	0	0	NA	9qE1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr9	100855832	100855832	A	T	ENSMUST00000129269.7	1	ENSMUSG00000037286	missense	E/V	414	Stag1	ENSMUST00000129269.7:c.1241A>T	ENSMUSP00000116205.1:p.Glu414Val	H-2-Db	9	3	9	EALSNEDCV	EALSNEDCE	NetMHC	162.17	20754.53	127.98	411	0.251	364.555	11513.819	31.583	20754.53	162.17	29954.3	951.5	2273.107631	411.7370988	1269.316718	317.3730167	M2_p20	-0.114285714	-0.114285714	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.252	411	0	0	NA	9qE3.3	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr9	57792568	57792568	G	A	ENSMUST00000171444.7	5	ENSMUSG00000004661	missense	T/I	552	Arid3b	ENSMUST00000171444.7:c.1655C>T	ENSMUSP00000130173.1:p.Thr552Ile	H-2-Db	9	3	9	SSHCSPSPI	SSHCSPSPT	NetMHC	173.27	6340.24	36.592	53	0.245	338.683	5350.539	15.798	6340.24	173.27	11012.5	480.6	3569.603675	249.2412955	4360.838467	428.1244195	M2_p20	-0.142857143	-0.142857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.281	53	0	0	NA	9qB	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr9	75009121	75009121	T	C	ENSMUST00000081746.6	1	ENSMUSG00000034858	missense	V/A	341	Fam214a	ENSMUST00000081746.6:c.1022T>C	ENSMUSP00000080442.5:p.Val341Ala	H-2-Kb	8	10	2	SARTFKSL	SVRTFKSL	NetMHC	36.76	38.28	1.041	91	0.22	89.089	86.247	0.968	38.28	36.76	126.3	177.1	85.8499408	84.47729517	86.64430052	93.70008827	M2_p20	-0.214285714	-0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.242	91	0	0	NA	9qD	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr9	106155782	106155782	A	G	ENSMUST00000036382.12	1	ENSMUSG00000020258	missense	V/A	344	Glyctk	ENSMUST00000036382.12:c.1031T>C	ENSMUSP00000047761.6:p.Val344Ala	H-2-Kb	8	10	2	RAARFYGL	RVARFYGL	NetMHCpan	27.8	30.5	1.097	59	0.203	63.802	70.784	1.109	50	37.5	30.5	27.8	91.56721386	90.10315536	110.8510982	119.8781411	M2_p20	0.571428571	0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.184	59	0	0	NA	9qF1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.85768125	sgMsh2	cell line
chr9	106155782	106155782	A	G	ENSMUST00000036382.12	1	ENSMUSG00000020258	missense	V/A	344	Glyctk	ENSMUST00000036382.12:c.1031T>C	ENSMUSP00000047761.6:p.Val344Ala	H-2-Kb	8	11	1	AARFYGLL	VARFYGLL	NetMHCpan	46.2	13.4	0.29	59	0.203	94.506	24.316	0.257	14.69	61.15	13.4	46.2	33.94220093	127.8615603	42.43654321	145.4587999	M2_p20	0.857142857	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.184	59	0	0	NA	9qF1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.85768125	sgMsh2	cell line
chr9	61410034	61410034	A	C	ENSMUST00000160882.7	1	ENSMUSG00000032280	missense	S/R	397	Tle3	ENSMUST00000160882.7:c.1189A>C	ENSMUSP00000124131.1:p.Ser397Arg	H-2-Kb	8	9	3	SPRAYAGL	SPSAYAGL	SMM	46.638	165.097	3.54	97	0.082	82.361	303.657	3.687	409.28	103.1	1326.7	1071.3	165.0973111	46.6380088	198.0341096	61.62259741	M2_p20	-0.057142857	-0.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.095	97	0	0	NA	9qB	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.442824558	sgMsh2	cell line
chrX	13665387	13665387	T	C	ENSMUST00000053659.1	1	ENSMUSG00000047678	missense	V/A	58	Gpr82	ENSMUST00000053659.1:c.173T>C	ENSMUSP00000062535.1:p.Val58Ala	H-2-Kb	8	8	4	ANLATANL	ANLVTANL	NetMHC	110.98	65.42	0.589	209	0.445	127.103	105.176	0.827	65.42	110.98	97.7	151.4	116.611129	121.5458122	112.6522836	132.6600022	M2_p20	0.5	0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.443	209	0	0	NA	XqA1.1	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	sgMsh2	cell line
chr9	88476836	88476836	A	G	ENSMUST00000173801.7	1	ENSMUSG00000032423	missense	F/L	207	Syncrip	ENSMUST00000173801.7:c.619T>C	ENSMUSP00000133649.1:p.Phe207Leu	H-2-Kb	8	5	7	LNRGYALV	LNRGYAFV	NetMHC	300.95	433.7	1.441	97	0.216	353.739	317.073	0.896	433.7	300.95	347.9	331	249.8848923	376.4783444	286.246378	409.9585987	M2_p20	0.014285714	0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.215	97	0	0	NA	9qE3.1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr9	88567183	88567183	A	G	ENSMUST00000162827.7	1	ENSMUSG00000032425	missense	T/A	14	Zfp949	ENSMUST00000162827.7:c.40A>G	ENSMUSP00000125325.1:p.Thr14Ala	H-2-Kb	8	5	7	VSFEDVAV	VSFEDVTV	SMM	137.956	229.477	1.663	174	0.247	234.442	389.195	1.66	538.65	316.57	957.8	868.8	229.4774419	137.9558114	239.7397234	152.3140619	M2_p20	0.742857143	0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.259	174	0	0	NA	9qE3.1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chrX	13156528	13156528	A	G	ENSMUST00000089302.10	1	ENSMUSG00000031010	missense	M/V	1956	Usp9x	ENSMUST00000089302.10:c.5866A>G	ENSMUSP00000086716.4:p.Met1956Val	H-2-Kb	8	4	8	YILFYERV	YILFYERM	SMM	224.771	252.197	1.122	251	0.474	268.862	240.139	0.893	228.08	325.11	90.5	290.7	252.1970487	224.7708563	267.1406633	247.0244836	M2_p20	0.857142857	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.461	251	0	0	NA	XqA1.1	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	sgMsh2	cell line
chr9	108052065	108052065	A	G	ENSMUST00000162355.7	1	ENSMUSG00000041528	missense	V/A	1271	Rnf123	ENSMUST00000162355.7:c.3812T>C	ENSMUSP00000125745.1:p.Val1271Ala	H-2-Kb	8	8	4	ISAAFQPC	ISAVFQPC	SMM	176.092	168.943	0.959	181	0.265	417.672	294.935	0.706	357.2	561.35	396.1	585.7	168.9429215	176.0921516	232.6697911	273.9933359	M2_p20	0.428571429	0.714285714	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.248	181	0	0	NA	9qF1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr9	61410034	61410034	A	C	ENSMUST00000160882.7	1	ENSMUSG00000032280	missense	S/R	397	Tle3	ENSMUST00000160882.7:c.1189A>C	ENSMUSP00000124131.1:p.Ser397Arg	H-2-Kb	9	8	4	TSPRAYAGL	TSPSAYAGL	NetMHC	5.57	8.39	1.506	97	0.082	133.371	100.057	0.75	8.39	5.57	43.4	32.8	156.7147954	233.9429705	232.9431801	271.8003427	M2_p20	-0.057142857	-0.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.095	97	0	0	NA	9qB	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.442824558	sgMsh2	cell line
chr9	106155782	106155782	A	G	ENSMUST00000036382.12	1	ENSMUSG00000020258	missense	V/A	344	Glyctk	ENSMUST00000036382.12:c.1031T>C	ENSMUSP00000047761.6:p.Val344Ala	H-2-Kb	9	10	2	RAARFYGLL	RVARFYGLL	NetMHC	16.87	23.3	1.381	59	0.203	71.279	81.97	1.15	23.3	16.87	21.8	17.5	140.6403699	125.0575741	181.6561058	157.1267038	M2_p20	0.857142857	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.184	59	0	0	NA	9qF1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.85768125	sgMsh2	cell line
chrX	66654167	66654167	C	T	ENSMUST00000166241.1	2	ENSMUSG00000036790	missense	A/V	88	Slitrk2	ENSMUST00000166241.1:c.263C>T	ENSMUSP00000130057.1:p.Ala88Val	H-2-Kb	9	6	6	VNYSNVVTL	VNYSNAVTL	NetMHCpan	25.9	27.4	1.058	108	0.13	51.877	58.499	1.128	41.47	33.59	27.4	25.9	75.52835049	70.16329886	111.2371876	86.14895227	M2_p20	0.842857143	0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.13	108	0	0	NA	XqA7.1	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	sgMsh2	cell line
chr9	71725634	71725634	T	G	ENSMUST00000072899.8	5	ENSMUSG00000032232	missense	N/T	145	Cgnl1	ENSMUST00000072899.8:c.434A>C	ENSMUSP00000072672.2:p.Asn145Thr	H-2-Kb	9	10	2	LTFQRHPEL	LNFQRHPEL	NetMHCpan	36.8	28.1	0.764	104	0.279	90.799	70.924	0.781	73.26	81.31	28.1	36.8	84.74420308	133.0791444	68.58829388	100.2882377	M2_p20	-1.385714286	-0.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.302	104	0	0	NA	9qD	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr9	96297705	96297705	G	GA	ENSMUST00000165768.3	1	ENSMUSG00000032411	FS	E/EX	140	Tfdp2	ENSMUST00000165768.3:c.426dup	ENSMUSP00000128260.2:p.Glu143ArgfsTer47	H-2-Kb	9	20	0	PAYQFCSGM	NA	NetMHC	85.15	NA	NA	149	0.295	106.96	NA	NA	NA	85.15	NA	165.8	NA	88.53398242	NA	125.3862749	M2_p20	0.171428571	0.171428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.29	149	0	0	NA	9qE3.3	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chrX	13156528	13156528	A	G	ENSMUST00000089302.10	1	ENSMUSG00000031010	missense	M/V	1956	Usp9x	ENSMUST00000089302.10:c.5866A>G	ENSMUSP00000086716.4:p.Met1956Val	H-2-Kb	9	3	9	AYILFYERV	AYILFYERM	NetMHC	118.44	85.41	0.721	251	0.474	145.227	88.422	0.609	85.41	118.44	77.1	134.1	91.43448014	156.3543614	95.33447955	157.4889183	M2_p20	0.857142857	0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.461	251	0	0	NA	XqA1.1	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	sgMsh2	cell line
chrX	9849913	9849913	T	C	ENSMUST00000057113.2	NA	ENSMUSG00000048994	missense	S/P	55	H2al3	ENSMUST00000057113.2:c.163T>C	ENSMUSP00000052025.1:p.Ser55Pro	H-2-Kb	9	6	6	LNYVTPSIL	LNYVTSSIL	SMM	217.325	118.334	0.545	184	0.429	286.985	138.425	0.482	151.65	320.37	125.2	253.6	118.334124	217.325156	242.8007366	383.9281887	M2_p20	1.157142857	1.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.429	184	0	0	NA	XqA1.1	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	sgMsh2	cell line
chr9	59324811	59324811	A	G	ENSMUST00000026265.7	1	ENSMUSG00000025235	missense	V/A	362	Bbs4	ENSMUST00000026265.7:c.1085T>C	ENSMUSP00000026265.6:p.Val362Ala	H-2-Kb	9	8	4	RAYAEAVRL	RAYVEAVRL	NetMHCpan	175.4	120.3	0.686	207	0.271	497.9	316.494	0.636	232.02	361.77	120.3	175.4	400.9682638	634.0302809	528.7495369	724.853099	M2_p20	0.328571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.268	207	0	0	NA	9qB	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr9	79700292	79700292	A	G	ENSMUST00000071750.12	5	ENSMUSG00000032332	missense	V/A	418	Col12a1	ENSMUST00000071750.12:c.1253T>C	ENSMUSP00000071662.6:p.Val418Ala	H-2-Kb	9	10	2	SAMEKTQPM	SVMEKTQPM	SMM	269.222	302.768	1.125	224	0.228	366.093	382.295	1.044	386.8	405.41	430.7	414	302.7680195	269.2216614	377.7896015	326.7758854	M2_p20	-1.342857143	-1.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	224	0	0	NA	9qE1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chr9	95970760	95970760	A	G	ENSMUST00000034981.13	1	ENSMUSG00000032410	missense	H/R	220	Xrn1	ENSMUST00000034981.13:c.659A>G	ENSMUSP00000034981.7:p.His220Arg	H-2-Kb	9	7	5	SHEARFSLL	SHEAHFSLL	SMMPMBEC	328.284	360.786	1.099	272	0.268	468.095	449.995	0.961	466.37	517.29	674.8	965.9	433.6206938	418.8996524	360.7862685	328.2842143	M2_p20	0.485714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.266	272	0	0	NA	9qE3.3	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	sgMsh2	cell line
chrX	129957349	129957349	T	C	ENSMUST00000037854.14	1	ENSMUSG00000034480	missense	Y/H	442	Diaph2	ENSMUST00000037854.14:c.1324T>C	ENSMUSP00000039334.8:p.Tyr442His	H-2-Db	9	5	7	LLIRNDHYI	LLIRNDYYI	NetMHC	113.82	76.53	0.672	85	0.388	130.682	123.751	0.947	76.53	113.82	109.6	118.6	141.7816414	142.7644248	137.9018207	156.8808739	M2_p20	-1	-0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.379	85	0	0	NA	XqE3	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	sgMsh2	cell line
chrX	133588496	133588496	A	G	ENSMUST00000149154.7	1	ENSMUSG00000051323	missense	M/T	977	Pcdh19	ENSMUST00000149154.7:c.2930T>C	ENSMUSP00000116886.1:p.Met977Thr	H-2-Db	9	5	7	WMPRNPTPT	WMPRNPMPT	NetMHC	233.44	1377.14	5.899	83	0.53	363.988	1119.682	3.076	1377.14	233.44	3001.1	2034.1	862.223787	394.1123099	717.0839465	333.8643134	M2_p20	-2.028571429	-1.557142857	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.55	83	0	0	NA	XqE3	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	sgMsh2	cell line
chrX	100541121	100541121	AC	A	ENSMUST00000037541.8	5	ENSMUSG00000067597	FS	H/X	107	Dgat2l6	ENSMUST00000037541.8:c.325del	ENSMUSP00000036845.8:p.His109MetfsTer26	H-2-Kb	8	22	0	STLLLSPL	NA	NetMHC	22.9	NA	NA	106	0.5	48.137	NA	NA	NA	22.9	NA	41.1	NA	55.17470248	NA	60.77710368	M2_p20	1.728571429	1.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.508	106	0	0	NA	XqC3	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	sgMsh2	cell line
chrX	154484267	154484267	A	G	ENSMUST00000026029.1	1	ENSMUSG00000025051	missense	Y/C	134	Samt4	ENSMUST00000026029.1:c.401A>G	ENSMUSP00000026029.1:p.Tyr134Cys	H-2-Kb	8	11	1	CCYKFSTL	YCYKFSTL	NetMHCpan	24.9	14.2	0.57	114	0.561	51.968	31.668	0.609	18.9	35.27	14.2	24.9	58.71377443	71.07878574	44.43651588	68.66572344	M2_p20	0.342857143	0.342857143	TRUE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.571	114	0	0	NA	XqF3	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	sgMsh2	cell line
chrX	100541121	100541121	AC	A	ENSMUST00000037541.8	5	ENSMUSG00000067597	FS	H/X	107	Dgat2l6	ENSMUST00000037541.8:c.325del	ENSMUSP00000036845.8:p.His109MetfsTer26	H-2-Kb	8	30	0	AFPGFSLL	NA	NetMHC	186.12	NA	NA	106	0.5	274.49	NA	NA	NA	186.12	NA	337.4	NA	240.8463117	NA	308.1342684	M2_p20	1.485714286	1.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.508	106	0	0	NA	XqC3	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	sgMsh2	cell line
chrX	112120441	112120441	A	C	ENSMUST00000038546.6	1	ENSMUSG00000034555	missense	N/T	868	Tex16	ENSMUST00000038546.6:c.2603A>C	ENSMUSP00000048187.6:p.Asn868Thr	H-2-Kb	9	8	4	AALTYYSDI	AALNYYSDI	NetMHC	45.94	34.76	0.757	119	0.504	110.25	112.858	1.024	34.76	45.94	67.5	57.1	227.567375	236.1076181	158.2158541	163.3992279	M2_p20	0.1	0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.494	119	0	0	NA	XqE1	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	sgMsh2	cell line
chrX	100541121	100541121	AC	A	ENSMUST00000037541.8	5	ENSMUSG00000067597	FS	H/X	107	Dgat2l6	ENSMUST00000037541.8:c.325del	ENSMUSP00000036845.8:p.His109MetfsTer26	H-2-Kb	9	29	0	LAFPGFSLL	NA	NetMHCpan	30.7	NA	NA	106	0.5	101.447	NA	NA	NA	61.93	NA	30.7	NA	140.9645794	NA	143.6316005	M2_p20	1.485714286	1.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.508	106	0	0	NA	XqC3	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	sgMsh2	cell line
chrX	133896744	133896744	A	G	ENSMUST00000087557.11	1	ENSMUSG00000067377	missense	L/P	97	Tspan6	ENSMUST00000087557.11:c.290T>C	ENSMUSP00000084838.5:p.Leu97Pro	H-2-Kb	9	5	7	KLYAMFPTL	KLYAMFLTL	NetMHCpan	31.7	47.6	1.502	175	0.4	143.759	235.626	1.639	218.84	77.57	47.6	31.7	252.4120012	209.947158	266.8394274	229.2186762	M2_p20	0.957142857	0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.402	175	0	0	NA	XqE3	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	sgMsh2	cell line
chrX	100541121	100541121	AC	A	ENSMUST00000037541.8	5	ENSMUSG00000067597	FS	H/X	107	Dgat2l6	ENSMUST00000037541.8:c.325del	ENSMUSP00000036845.8:p.His109MetfsTer26	H-2-Kb	9	21	0	SSTLLLSPL	NA	NetMHC	93.75	NA	NA	106	0.5	225.402	NA	NA	NA	93.75	NA	206.4	NA	244.4049514	NA	314.2317036	M2_p20	1.728571429	1.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.508	106	0	0	NA	XqC3	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	sgMsh2	cell line
chrX	86747655	86747655	G	A	ENSMUST00000113966.7	5	ENSMUSG00000052372	missense	P/S	560	Il1rapl1	ENSMUST00000113966.7:c.1678C>T	ENSMUSP00000109599.1:p.Pro560Ser	H-2-Kb	9	10	2	MSFKRIEPI	MPFKRIEPI	NetMHCpan	58.3	2180.6	37.403	76	0.447	177.366	2262.711	12.757	4631.31	173.91	2180.6	58.3	2344.822647	233.4049166	1946.480243	180.8214719	M2_p20	-0.242857143	-0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.465	76	0	0	NA	XqC1	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	sgMsh2	cell line
chrX	154484267	154484267	A	G	ENSMUST00000026029.1	1	ENSMUSG00000025051	missense	Y/C	134	Samt4	ENSMUST00000026029.1:c.401A>G	ENSMUSP00000026029.1:p.Tyr134Cys	H-2-Kb	9	10	2	ICCYKFSTL	IYCYKFSTL	SMMPMBEC	182.915	124.81	0.682	114	0.561	304.761	151.547	0.497	104.67	207.63	294.8	515.6	178.2830273	401.8925911	124.8101773	182.9152858	M2_p20	0.342857143	0.9	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.571	114	0	0	NA	XqF3	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	sgMsh2	cell line
chrX	154484267	154484267	A	G	ENSMUST00000026029.1	1	ENSMUSG00000025051	missense	Y/C	134	Samt4	ENSMUST00000026029.1:c.401A>G	ENSMUSP00000026029.1:p.Tyr134Cys	H-2-Kb	9	11	1	CCYKFSTLV	YCYKFSTLV	NetMHC	230.24	197.55	0.858	114	0.561	279.061	245.695	0.88	197.55	230.24	186.9	288.9	293.8393807	269.2216614	308.4963287	372.6061339	M2_p20	0.585714286	0.585714286	TRUE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.571	114	0	0	NA	XqF3	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	sgMsh2	cell line
chrX	133896744	133896744	A	G	ENSMUST00000087557.11	1	ENSMUSG00000067377	missense	L/P	97	Tspan6	ENSMUST00000087557.11:c.290T>C	ENSMUSP00000084838.5:p.Leu97Pro	H-2-Kb	9	8	4	AMFPTLIFL	AMFLTLIFL	SMM	229.673	136.493	0.594	175	0.4	282.66	212.178	0.751	211.91	265.82	891.2	299.5	136.4928808	229.67303	212.4467052	348.5378918	M2_p20	2.2	2.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.402	175	0	0	NA	XqE3	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	sgMsh2	cell line
chrX	100541121	100541121	AC	A	ENSMUST00000037541.8	5	ENSMUSG00000067597	FS	H/X	107	Dgat2l6	ENSMUST00000037541.8:c.325del	ENSMUSP00000036845.8:p.His109MetfsTer26	H-2-Kb	9	26	0	LSPLAFPGF	NA	NetMHC	290.86	NA	NA	106	0.5	490.875	NA	NA	NA	290.86	NA	455.6	NA	526.1505152	NA	767.8033453	M2_p20	1.085714286	1.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.508	106	0	0	NA	XqC3	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	sgMsh2	cell line
chrX	150560905	150560905	C	T	ENSMUST00000066337.12	1	ENSMUSG00000025270	missense	S/F	332	Alas2	ENSMUST00000066337.12:c.995C>T	ENSMUSP00000066040.6:p.Ser332Phe	H-2-Kb	9	4	8	VAFETVHFM	VAFETVHSM	NetMHCpan	190.3	145.9	0.767	73	0.493	345.568	269.434	0.78	240.94	292.01	145.9	190.3	297.9270937	399.1259819	400.1750427	542.312981	M2_p20	0.614285714	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.488	73	0	0	NA	XqF3	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	sgMsh2	cell line
chrX	110814921	110814921	AC	A	ENSMUST00000078229.4	NA	ENSMUSG00000056854	FS	P/X	153	Pou3f4	ENSMUST00000078229.4:c.458del	ENSMUSP00000077354.3:p.Pro153HisfsTer88	H-2-Kb	9	41	0	TLMKRLQPL	NA	NetMHCpan	212.6	NA	NA	48	0.417	362.029	NA	NA	NA	369.04	NA	212.6	NA	464.6329446	NA	355.017695	M2_p20	-0.571428571	-0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.399	48	0	0	NA	XqE1	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	sgMsh2	cell line
chrX	100541121	100541121	AC	A	ENSMUST00000037541.8	5	ENSMUSG00000067597	FS	H/X	107	Dgat2l6	ENSMUST00000037541.8:c.325del	ENSMUSP00000036845.8:p.His109MetfsTer26	H-2-Kb	9	16	0	SVMVPSSTL	NA	NetMHC	382.77	NA	NA	106	0.5	454.801	NA	NA	NA	382.77	NA	497.4	NA	412.2019102	NA	883.5883884	M2_p20	0.857142857	0.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.508	106	0	0	NA	XqC3	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	sgMsh2	cell line
chrX	100541121	100541121	AC	A	ENSMUST00000037541.8	5	ENSMUSG00000067597	FS	H/X	107	Dgat2l6	ENSMUST00000037541.8:c.325del	ENSMUSP00000036845.8:p.His109MetfsTer26	H-2-Kb	9	17	0	VMVPSSTLL	NA	SMM	236.108	NA	NA	106	0.5	381.084	NA	NA	NA	386.98	NA	389.1	NA	236.1076181	NA	375.1889162	M2_p20	1.128571429	1.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.508	106	0	0	NA	XqC3	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	sgMsh2	cell line
chrX	100541121	100541121	AC	A	ENSMUST00000037541.8	5	ENSMUSG00000067597	FS	H/X	107	Dgat2l6	ENSMUST00000037541.8:c.325del	ENSMUSP00000036845.8:p.His109MetfsTer26	H-2-Kb	9	7	7	IILSHPMAF	IILSHPHGI	SMM	392.744	734.7	1.871	106	0.5	440.625	996.154	2.261	1162.17	397.65	1025.7	483.6	734.6999326	392.7443988	966.6071427	536.1051757	M2_p20	0.671428571	1.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.508	106	0	0	NA	XqC3	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	sgMsh2	cell line
chrX	101673545	101673545	GA	G	ENSMUST00000044475.4	1	ENSMUSG00000034160	FS	K/X	757	Ogt	ENSMUST00000044475.4:c.2271del	ENSMUSP00000045409.4:p.Lys757AsnfsTer23	H-2-Kb	9	22	0	VTQLLICPL	NA	NetMHCpan	324.4	NA	NA	91	0.538	478.008	NA	NA	NA	401.25	NA	324.4	NA	554.7662088	NA	602.9065471	M2_p20	1.9	2.085714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.466	91	0	0	NA	XqD	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	sgMsh2	cell line
chr1	85579187	85579187	CT	C	ENSMUST00000093508.6	1	ENSMUSG00000070034	FS	K/X	385	Sp110	ENSMUST00000093508.6:c.1154del	ENSMUSP00000091226.6:p.Lys385SerfsTer13	H-2-Db	9	11	1	SAFRMRQEI	NA	SMMPMBEC	212.114	NA	NA	90	0.111	246.936	NA	NA	NA	356.88	NA	263.4	NA	230.4729708	NA	212.1143253	M2	-0.971428571	-0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.127	90	0	0	NA	1qC5	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.533697303	sgMsh2	cell line
chr1	127412243	127412243	G	T	ENSMUST00000038361.10	1	ENSMUSG00000036155	missense	V/L	454	Mgat5	ENSMUST00000038361.10:c.1360G>T	ENSMUSP00000038359.4:p.Val454Leu	H-2-Kb	8	4	8	QSLVYGKL	QSLVYGKV	NetMHC	15.26	75.8	4.967	118	0.22	52.362	246.565	4.709	75.8	15.26	265.7	39.6	232.6697911	65.12383991	260.4593785	71.90183929	M2	0.771428571	0.771428571	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.217	118	113	20	0.17699115	1qE3	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.91190799	sgMsh2	cell line
chr1	128364313	128364313	A	G	ENSMUST00000027602.14	1	ENSMUSG00000026356	missense	V/A	476	Dars	ENSMUST00000027602.14:c.1427T>C	ENSMUSP00000027602.8:p.Val476Ala	H-2-Kb	8	11	1	ATMLFLGL	VTMLFLGL	NetMHCpan	13.4	5.5	0.41	107	0.243	28.635	8.869	0.31	5.27	15.32	5.5	13.4	14.47904774	54.54312289	12.23883275	41.95077612	M2	2.142857143	2.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.261	107	221	51	0.230769231	1qE3	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr1	84912361	84912361	C	A	ENSMUST00000027422.6	1	ENSMUSG00000026220	missense	A/S	408	Slc16a14	ENSMUST00000027422.6:c.1222G>T	ENSMUSP00000027422.5:p.Ala408Ser	H-2-Kb	8	6	6	LMHTYSSL	LMHTYASL	NetMHC	32.78	13.28	0.405	104	0.173	74.006	33.853	0.457	13.28	32.78	20.2	35.1	63.64144033	143.7937467	47.50507412	112.911974	M2	-0.157142857	-0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.165	104	0	0	NA	1qC5	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.69338626	sgMsh2	cell line
chr1	88233353	88233353	T	G	ENSMUST00000113130.7	5	ENSMUSG00000079429	missense	L/R	231	Mroh2a	ENSMUST00000113130.7:c.692T>G	ENSMUSP00000108755.1:p.Leu231Arg	H-2-Kb	8	7	5	VQFYRRHL	VQFYLRHL	NetMHC	36.12	18.54	0.513	326	0.08	95.506	36.489	0.382	18.54	36.12	19.8	52.1	53.17897962	156.221211	53.17897962	138.9120754	M2	-1.485714286	-1.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.08	326	0	0	NA	1qD	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.336187278	sgMsh2	cell line
chr1	132014588	132014588	A	G	ENSMUST00000086556.11	1	ENSMUSG00000026436	missense	Y/C	66	Elk4	ENSMUST00000086556.11:c.197A>G	ENSMUSP00000083743.5:p.Tyr66Cys	H-2-Kb	8	6	6	RALRYCYV	RALRYYYV	NetMHC	53.18	33.42	0.628	44	0.205	95.601	68.626	0.718	33.42	53.18	49.2	71.6	88.05215715	119.6024291	102.2680559	132.3548926	M2	0.742857143	0.742857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	44	70	9	0.128571429	1qE4	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.949729059	sgMsh2	cell line
chr1	58595689	58595689	A	T	ENSMUST00000027193.8	1	ENSMUSG00000026032	missense	I/F	67	Ndufb3	ENSMUST00000027193.8:c.199A>T	ENSMUSP00000027193.8:p.Ile67Phe	H-2-Kb	8	9	3	GNFTFPSV	GNITFPSV	NetMHCpan	49.1	289.6	5.898	71	0.338	107.5	583.368	5.427	915.1	105.67	289.6	49.1	648.2462304	133.5795574	518.4895408	109.3301641	M2	0.457142857	0.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.317	71	350	77	0.22	1qC1.3	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr1	38798142	38798142	C	A	ENSMUST00000039612.4	1	ENSMUSG00000048814	missense	G/C	482	Lonrf2	ENSMUST00000039612.4:c.1444G>T	ENSMUSP00000047372.4:p.Gly482Cys	H-2-Kb	8	8	4	AILCMASL	AILGMASL	NetMHC	128.11	316.79	2.473	45	0.244	151.842	286.838	1.889	316.79	128.11	443.3	194.3	256.8857419	147.8223152	249.8848923	155.8619122	M2	2.5	2.5	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.279	45	0	0	NA	1qB	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr1	88265942	88265942	C	T	ENSMUST00000054674.14	1	ENSMUSG00000044783	missense	D/N	415	Hjurp	ENSMUST00000054674.14:c.1243G>A	ENSMUSP00000054263.8:p.Asp415Asn	H-2-Kb	8	6	6	IKIKFNKL	IKIKFDKL	SMMPMBEC	139.232	273.993	1.968	455	0.037	185.503	617.502	3.329	961.01	226.88	1102.9	351.3	272.7344509	144.1252256	273.9933359	139.2323008	M2	-0.585714286	-0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.041	455	153	0	0	1qD	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.17229598	sgMsh2	cell line
chr1	78417407	78417407	G	T	ENSMUST00000036172.9	1	ENSMUSG00000032908	missense	R/M	349	Sgpp2	ENSMUST00000036172.9:c.1046G>T	ENSMUSP00000036656.8:p.Arg349Met	H-2-Kb	8	13	4	MLHMFLGL	MLHRFLGL	NetMHCpan	73.8	44.7	0.606	108	0.278	174.158	116.325	0.668	136.92	231.59	44.7	73.8	127.2740898	204.5219854	105.3755853	143.7937467	M2	1.785714286	1.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.307	108	5	2	0.4	1qC4	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr1	139489652	139489652	T	C	ENSMUST00000053364.11	1	ENSMUSG00000033952	missense	F/L	2796	Aspm	ENSMUST00000053364.11:c.8386T>C	ENSMUSP00000059159.8:p.Phe2796Leu	H-2-Kb	8	4	8	VIFIQRWL	VIFIQRWF	SMM	67.568	1098.348	16.255	81	0.235	141.56	1282.237	9.058	1985.41	305.53	1162.5	171.5	1098.348092	67.56783445	1401.97413	111.6194813	M2	0.957142857	1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.224	81	20	3	0.15	1qF	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.941324377	sgMsh2	cell line
chr1	139490428	139490428	T	G	ENSMUST00000053364.11	1	ENSMUSG00000033952	missense	V/G	2965	Aspm	ENSMUST00000053364.11:c.8894T>G	ENSMUSP00000059159.8:p.Val2965Gly	H-2-Kb	8	7	5	VGYAGQVL	VGYAVQVL	SMM	226.851	79.203	0.349	176	0.284	240.587	93.451	0.388	69.7	407.9	107.7	238.1	79.2027024	226.8506354	115.8083836	243.0748352	M2	0.6	0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.294	176	10	3	0.3	1qF	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr1	78417407	78417407	G	T	ENSMUST00000036172.9	1	ENSMUSG00000032908	missense	R/M	349	Sgpp2	ENSMUST00000036172.9:c.1046G>T	ENSMUSP00000036656.8:p.Arg349Met	H-2-Kb	8	11	6	VPMLHMFL	VPMLHRFL	SMM	147.822	181.861	1.23	108	0.278	366.042	656.102	1.792	1114.17	563.41	1125.5	556.8	181.861178	147.8223152	198.0341096	175.2830817	M2	1.342857143	1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.307	108	5	2	0.4	1qC4	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr1	6248458	6248458	T	G	ENSMUST00000027040.12	1	ENSMUSG00000025907	missense	D/E	700	Rb1cc1	ENSMUST00000027040.12:c.2100T>G	ENSMUSP00000027040.6:p.Asp700Glu	H-2-Kb	8	8	4	HTFEFETI	HTFDFETI	NetMHCpan	152.3	271.7	1.784	191	0.277	452.861	698.14	1.542	1496.9	688.75	271.7	152.3	775.7825382	498.5859086	620.4974485	407.1364636	M2	0.242857143	0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.276	191	97	26	0.268041237	1qA1	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr1	74622232	74622232	C	A	ENSMUST00000087183.10	5	ENSMUSG00000033276	missense	L/I	473	Stk36	ENSMUST00000087183.10:c.1417C>A	ENSMUSP00000084430.4:p.Leu473Ile	H-2-Kb	8	7	5	VSHLIPVL	VSHLLPVL	NetMHCpan	219	150	0.685	72	0.181	479.976	180.465	0.376	261.35	731.62	150	219	175.6871509	525.7024488	185.2422298	434.2501729	M2	1.528571429	1.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.219	72	2	0	0	1qC3	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.920312672	sgMsh2	cell line
chr1	92480592	92480592	T	C	ENSMUST00000214928.2	3	ENSMUSG00000067064	missense	S/G	10	Olfr1416	ENSMUST00000214928.2:c.28A>G	ENSMUSP00000149576.1:p.Ser10Gly	H-2-Kb	8	8	3	KVGTFILL	KVSTFILL	SMMPMBEC	314.586	448.477	1.426	101	0.218	365.406	453.7	1.242	635.35	811.55	208.3	342	458.9231861	388.8123042	448.476819	314.5864409	M2	2.571428571	2.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.22	101	0	0	NA	1qD	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.924515013	sgMsh2	cell line
chr1	135469807	135469807	T	C	ENSMUST00000067414.12	5	ENSMUSG00000009418	missense	M/V	875	Nav1	ENSMUST00000067414.12:c.2623A>G	ENSMUSP00000067241.6:p.Met875Val	H-2-Kb	9	10	2	RVYPKLSGL	RMYPKLSGL	NetMHCpan	47.3	43.4	0.918	63	0.27	91.207	51.456	0.564	44.82	56.49	43.4	47.3	58.09115347	125.9244318	86.14895227	175.0854271	M2	-0.057142857	1.59E-17	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.289	63	28	5	0.178571429	1qE4	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr1	78417181	78417181	G	T	ENSMUST00000036172.9	1	ENSMUSG00000032908	missense	D/Y	274	Sgpp2	ENSMUST00000036172.9:c.820G>T	ENSMUSP00000036656.8:p.Asp274Tyr	H-2-Kb	9	9	3	TTYMLVLGL	TTDMLVLGL	NetMHCpan	50.2	5346	106.494	189	0.233	135.817	4262.224	31.382	5024.11	61.62	5346	50.2	3500.338139	251.8314697	2577.804634	210.0148478	M2	2.257142857	2.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.228	189	4	2	0.5	1qC4	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.958133741	sgMsh2	cell line
chr1	88233353	88233353	T	G	ENSMUST00000113130.7	5	ENSMUSG00000079429	missense	L/R	231	Mroh2a	ENSMUST00000113130.7:c.692T>G	ENSMUSP00000108755.1:p.Leu231Arg	H-2-Kb	9	6	6	TVQFYRRHL	TVQFYLRHL	NetMHC	126.67	85.86	0.678	326	0.08	471.067	257.259	0.546	85.86	126.67	51.1	243.5	428.6570788	722.9528931	435.7626466	698.6344547	M2	-1.485714286	-1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.08	326	0	0	NA	1qD	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.336187278	sgMsh2	cell line
chr1	38798142	38798142	C	A	ENSMUST00000039612.4	1	ENSMUSG00000048814	missense	G/C	482	Lonrf2	ENSMUST00000039612.4:c.1444G>T	ENSMUSP00000047372.4:p.Gly482Cys	H-2-Kb	9	7	5	LAILCMASL	LAILGMASL	NetMHC	163.29	581.03	3.558	45	0.244	338.718	610.567	1.803	581.03	163.29	451.3	329.7	869.1805512	448.8590645	640.1032025	347.7362769	M2	2.5	2.871428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.279	45	0	0	NA	1qB	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr1	78417407	78417407	G	T	ENSMUST00000036172.9	1	ENSMUSG00000032908	missense	R/M	349	Sgpp2	ENSMUST00000036172.9:c.1046G>T	ENSMUSP00000036656.8:p.Arg349Met	H-2-Kb	9	8	9	TTFVPMLHM	TTFVPMLHR	NetMHC	193.73	6290.5	32.47	108	0.278	297.586	5856.815	19.681	6290.5	193.73	14240.3	241.9	3972.921646	353.2726369	5423.12981	402.0221668	M2	1.4	1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.307	108	5	2	0.4	1qC4	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr1	128364313	128364313	A	G	ENSMUST00000027602.14	1	ENSMUSG00000026356	missense	V/A	476	Dars	ENSMUST00000027602.14:c.1427T>C	ENSMUSP00000027602.8:p.Val476Ala	H-2-Kb	9	6	6	IGLERATML	IGLERVTML	NetMHCpan	169.6	134.8	0.795	107	0.243	303	226.99	0.749	136.11	195.56	134.8	169.6	457.2039776	492.1641774	317.8703353	410.4403034	M2	0.371428571	0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.261	107	221	51	0.230769231	1qE3	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr1	85579187	85579187	CT	C	ENSMUST00000093508.6	1	ENSMUSG00000070034	FS	K/X	385	Sp110	ENSMUST00000093508.6:c.1154del	ENSMUSP00000091226.6:p.Lys385SerfsTer13	H-2-Kb	9	11	1	SAFRMRQEI	NA	NetMHC	222.54	NA	NA	90	0.111	380.963	NA	NA	NA	222.54	NA	325.3	NA	436.6264089	NA	527.5334467	M2	-0.971428571	-0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.127	90	0	0	NA	1qC5	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.533697303	sgMsh2	cell line
chr1	139490428	139490428	T	G	ENSMUST00000053364.11	1	ENSMUSG00000033952	missense	V/G	2965	Aspm	ENSMUST00000053364.11:c.8894T>G	ENSMUSP00000059159.8:p.Val2965Gly	H-2-Kb	9	7	5	VGYAGQVLL	VGYAVQVLL	NetMHCpan	118.8	88	0.741	176	0.284	271.495	239.376	0.882	156.46	226.58	88	118.8	343.6449768	358.1871488	322.2923521	316.4098538	M2	1.2	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.294	176	10	3	0.3	1qF	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr1	134309689	134309689	GC	G	ENSMUST00000168515.7	1	ENSMUSG00000026458	FS	G/X	957	Ppfia4	ENSMUST00000168515.7:c.2871del	ENSMUSP00000128314.1:p.Leu958SerfsTer48	H-2-Kb	9	38	0	VSISRWWTV	NA	SMMPMBEC	128.603	NA	NA	30	0.167	134.754	NA	NA	NA	297.91	NA	132.7	NA	136.8075294	NA	128.6026743	M2	0.128571429	0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.217	30	0	0	NA	1qE4	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.91190799	sgMsh2	cell line
chr1	78417407	78417407	G	T	ENSMUST00000036172.9	1	ENSMUSG00000032908	missense	R/M	349	Sgpp2	ENSMUST00000036172.9:c.1046G>T	ENSMUSP00000036656.8:p.Arg349Met	H-2-Kb	9	13	4	MLHMFLGLL	MLHRFLGLL	NetMHC	301.41	258.82	0.859	108	0.278	423.849	447.156	1.055	258.82	301.41	134.6	328.6	635.4918716	523.7330732	681.1613539	519.0987702	M2	1.785714286	1.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.307	108	5	2	0.4	1qC4	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr1	128588949	128588949	T	G	ENSMUST00000052172.6	1	ENSMUSG00000045382	missense	N/T	325	Cxcr4	ENSMUST00000052172.6:c.974A>C	ENSMUSP00000053489.6:p.Asn325Thr	H-2-Kb	9	11	1	TSMSRGSSL	NSMSRGSSL	SMMPMBEC	254.244	938.102	3.69	70	0.071	270.644	1139.551	4.211	2464.99	355.82	1341	278.8	861.2118561	262.4883301	938.1018664	254.2435828	M2	-0.228571429	-0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.063	70	0	0	NA	1qE3	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.264747481	sgMsh2	cell line
chr1	134309689	134309689	GC	G	ENSMUST00000168515.7	1	ENSMUSG00000026458	FS	G/X	957	Ppfia4	ENSMUST00000168515.7:c.2871del	ENSMUSP00000128314.1:p.Leu958SerfsTer48	H-2-Kb	9	40	0	ISRWWTVSI	NA	NetMHCpan	199.5	NA	NA	30	0.167	429.782	NA	NA	NA	393.71	NA	199.5	NA	563.7804345	NA	465.8541836	M2	0.128571429	0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.217	30	0	0	NA	1qE4	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.91190799	sgMsh2	cell line
chr1	134309689	134309689	GC	G	ENSMUST00000168515.7	1	ENSMUSG00000026458	FS	G/X	957	Ppfia4	ENSMUST00000168515.7:c.2871del	ENSMUSP00000128314.1:p.Leu958SerfsTer48	H-2-Kb	9	46	0	VSIEPVFSM	NA	NetMHCpan	356.9	NA	NA	30	0.167	472.213	NA	NA	NA	423.1	NA	356.9	NA	521.3267383	NA	682.7315929	M2	1.071428571	1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.217	30	0	0	NA	1qE4	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.91190799	sgMsh2	cell line
chr1	127412243	127412243	G	T	ENSMUST00000038361.10	1	ENSMUSG00000036155	missense	V/L	454	Mgat5	ENSMUST00000038361.10:c.1360G>T	ENSMUSP00000038359.4:p.Val454Leu	H-2-Kb	9	6	6	LVYGKLDSF	LVYGKVDSF	SMM	278.042	542.138	1.95	118	0.22	372.202	726.824	1.953	911.51	463.7	1434.9	1078.9	542.1381881	278.0417415	480.0096849	280.704904	M2	-0.471428571	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.217	118	113	20	0.17699115	1qE3	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.91190799	sgMsh2	cell line
chr1	150808584	150808584	C	A	ENSMUST00000074783.11	5	ENSMUSG00000066842	missense	G/C	412	Hmcn1	ENSMUST00000074783.11:c.1234G>T	ENSMUSP00000074340.5:p.Gly412Cys	H-2-Kb	9	5	7	TGYDKDCYL	TGYDKDGYL	SMMPMBEC	281.352	241.129	0.857	77	0.221	397.422	570.225	1.435	814.53	465.91	815.3	889.7	325.9192408	328.9349344	241.1293081	281.3519957	M2	-1.028571429	-1.028571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.247	77	0	0	NA	1qG1	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr10	68778643	68778643	T	C	ENSMUST00000080995.7	1	ENSMUSG00000060044	missense	L/P	296	Tmem26	ENSMUST00000080995.7:c.887T>C	ENSMUSP00000079789.6:p.Leu296Pro	H-2-Db	9	5	7	FAVKNSPVM	FAVKNSLVM	NetMHC	8.71	9.25	1.062	154	0.273	25.374	27.679	1.091	9.25	8.71	9.8	10.7	46.62512402	43.51309752	45.5585612	40.04700113	M2	0.071428571	0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.276	154	0	0	NA	10qB5.3	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr1	165539831	165539831	A	G	ENSMUST00000027852.14	1	ENSMUSG00000026567	missense	T/A	557	Adcy10	ENSMUST00000027852.14:c.1669A>G	ENSMUSP00000027852.8:p.Thr557Ala	H-2-Db	9	4	8	SFHQNFYAI	SFHQNFYTI	SMM	105.104	62.176	0.592	130	0.192	167.108	96.911	0.58	73.99	141.21	379.5	647.3	62.17560216	105.1041828	119.8312253	193.0056399	M2	-0.342857143	-0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.21	130	0	0	NA	1qH2.3	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.882491604	sgMsh2	cell line
chr1	189295690	189295690	C	T	ENSMUST00000193319.5	1	ENSMUSG00000037624	missense	A/T	127	Kcnk2	ENSMUST00000193319.5:c.379G>A	ENSMUSP00000141891.1:p.Ala127Thr	H-2-Db	9	6	6	VAAINTGII	VAAINAGII	NetMHC	153.37	117.64	0.767	96	0.229	312.04	293.714	0.941	117.64	153.37	245	282.4	347.2322064	341.6803474	342.4285761	356.0983817	M2	1.528571429	1.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.254	96	0	0	NA	1qH6	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr10	18696606	18696606	C	T	ENSMUST00000215836.1	1	ENSMUSG00000019852	missense	A/T	100	Arfgef3	ENSMUST00000215836.1:c.298G>A	ENSMUSP00000149210.1:p.Ala100Thr	H-2-Db	9	6	6	NQILNTVKV	NQILNAVKV	NetMHC	159.82	125.73	0.787	87	0.218	470.345	463.738	0.986	125.73	159.82	340.5	363.1	586.9755345	577.5904448	732.0993142	761.3248402	M2	1.228571429	1.228571429	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.223	87	0	0	NA	10qA3	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	0.937122036	sgMsh2	cell line
chr10	68778643	68778643	T	C	ENSMUST00000080995.7	1	ENSMUSG00000060044	missense	L/P	296	Tmem26	ENSMUST00000080995.7:c.887T>C	ENSMUSP00000079789.6:p.Leu296Pro	H-2-Db	11	5	7	FAVKNSPVMAL	FAVKNSLVMAL	NetMHCpan	139.4	136.7	0.981	154	0.273	479.924	423.713	0.883	274.55	315.59	136.7	139.4	572.8751711	644.2582669	2605.313561	2641.557083	M2	0.828571429	0.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.276	154	0	0	NA	10qB5.3	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr1	174159275	174159275	CT	C	ENSMUST00000213748.1	5	ENSMUSG00000055033	FS	P/X	167	Olfr420	ENSMUST00000213748.1:c.505del	ENSMUSP00000149052.1:p.Cys169ValfsTer29	H-2-Kb	8	8	6	STLPFVAL	STLPFCGS	NetMHC	9.98	3774.27	378.183	202	0.228	17.238	1572.342	91.216	3774.27	9.98	2500.9	15.3	350.5419514	19.17520431	643.7837347	26.40827294	M2	2.014285714	2.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.224	202	0	0	NA	1qH3	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.941324377	sgMsh2	cell line
chr10	50754122	50754122	G	T	ENSMUST00000035606.9	5	ENSMUSG00000038774	missense	S/I	1769	Ascc3	ENSMUST00000035606.9:c.5306G>T	ENSMUSP00000036726.8:p.Ser1769Ile	H-2-Kb	8	8	4	MNPIYYSL	MNPSYYSL	NetMHC	10.83	12.27	1.133	123	0.244	32.613	36.465	1.118	12.27	10.83	28.9	21.7	44.02911945	43.52512229	62.62388407	64.23030732	M2	-0.028571429	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.254	123	102	13	0.12745098	10qB3	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr1	174430463	174430463	GT	G	ENSMUST00000192358.2	2	ENSMUSG00000051509	FS	F/X	12	Olfr414	ENSMUST00000192358.2:c.36del	ENSMUSP00000142051.1:p.Phe12LeufsTer26	H-2-Kb	8	12	0	SWWGFLPL	NA	NetMHC	46.67	NA	NA	127	0.276	63.18	NA	NA	NA	46.67	NA	87.2	NA	68.98267002	NA	57.37728575	M2	0.942857143	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.288	127	0	0	NA	1qH3	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr1	152855898	152855898	T	C	ENSMUST00000043560.14	1	ENSMUSG00000042772	missense	R/G	379	Smg7	ENSMUST00000043560.14:c.1135A>G	ENSMUSP00000041241.8:p.Arg379Gly	H-2-Kb	8	5	7	VSMDWLGL	VSMDWLRL	NetMHCpan	34.7	24.7	0.712	177	0.22	70.049	45.03	0.643	38.45	50.82	24.7	34.7	69.30107956	116.611129	51.61072977	89.27708467	M2	0.557142857	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.224	177	72	24	0.333333333	1qG3	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.941324377	sgMsh2	cell line
chr10	40227566	40227566	T	G	ENSMUST00000183309.7	1	ENSMUSG00000038510	missense	S/R	197	Rpf2	ENSMUST00000183309.7:c.589A>C	ENSMUSP00000138581.1:p.Ser197Arg	H-2-Kb	8	7	5	VYFRRYKL	VYFRSYKL	NetMHC	57.17	143.56	2.511	147	0.306	156.487	155.477	0.994	143.56	57.17	65	69.9	167.3940435	272.7344509	189.1211064	243.0748352	M2	-1.271428571	-1.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.311	147	129	33	0.255813953	10qB1	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr10	41253689	41253689	A	C	ENSMUST00000043814.4	1	ENSMUSG00000038417	missense	L/V	512	Fig4	ENSMUST00000043814.4:c.1534T>G	ENSMUSP00000039598.3:p.Leu512Val	H-2-Kb	8	4	8	LAYQLYSV	LAYQLYSL	NetMHCpan	100	22.6	0.226	74	0.203	191.43	48.686	0.254	21.8	115.72	22.6	100	74.77217263	267.1406633	77.57825382	281.0217928	M2	0.414285714	0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.228	74	29	6	0.206896552	10qB1	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	0.958133741	sgMsh2	cell line
chr1	174430463	174430463	GT	G	ENSMUST00000192358.2	2	ENSMUSG00000051509	FS	F/X	12	Olfr414	ENSMUST00000192358.2:c.36del	ENSMUSP00000142051.1:p.Phe12LeufsTer26	H-2-Kb	8	24	0	HSSLFSFL	NA	SMMPMBEC	172.48	NA	NA	127	0.276	197.335	NA	NA	NA	200.25	NA	238.5	NA	194.4195797	NA	172.480499	M2	1.542857143	1.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.288	127	0	0	NA	1qH3	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr1	151351713	151351713	T	C	ENSMUST00000023918.12	1	ENSMUSG00000023150	missense	Y/H	91	Ivns1abp	ENSMUST00000023918.12:c.271T>C	ENSMUSP00000023918.6:p.Tyr91His	H-2-Kb	8	5	7	VLLNYAHT	VLLNYAYT	SMMPMBEC	192.637	198.034	1.028	136	0.294	277.822	339.303	1.221	371.18	233.73	1146.3	1299.8	307.4255792	321.9141004	198.0341096	192.6371303	M2	0.1	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.286	136	238	46	0.193277311	1qG1	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr1	174430463	174430463	GT	G	ENSMUST00000192358.2	2	ENSMUSG00000051509	FS	F/X	12	Olfr414	ENSMUST00000192358.2:c.36del	ENSMUSP00000142051.1:p.Phe12LeufsTer26	H-2-Kb	8	26	0	SLFSFLQF	NA	NetMHCpan	52.8	NA	NA	127	0.276	235.825	NA	NA	NA	244.8	NA	52.8	NA	340.9887101	NA	226.8506354	M2	1.671428571	1.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.288	127	0	0	NA	1qH3	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr10	4106413	4106413	C	T	ENSMUST00000120585.7	1	ENSMUSG00000040675	missense	H/Y	910	Mthfd1l	ENSMUST00000120585.7:c.2728C>T	ENSMUSP00000112897.1:p.His910Tyr	H-2-Kb	8	7	5	MAKTYLSL	MAKTHLSL	NetMHCpan	120.4	1166.7	9.69	62	0.274	225.556	1067.199	4.731	2990.56	345.37	1166.7	120.4	880.5215715	227.3735801	967.6983488	223.738128	M2	0.385714286	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.27	62	202	47	0.232673267	10qA1	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr10	40227566	40227566	T	G	ENSMUST00000183309.7	1	ENSMUSG00000038510	missense	S/R	197	Rpf2	ENSMUST00000183309.7:c.589A>C	ENSMUSP00000138581.1:p.Ser197Arg	H-2-Kb	8	8	4	YFRRYKLL	YFRSYKLL	SMM	208.324	310.27	1.489	147	0.306	311.059	539.717	1.735	718.24	383.48	735.4	396.7	310.2701531	208.324333	361.1935614	238.6382195	M2	-0.542857143	-0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.311	147	129	33	0.255813953	10qB1	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr10	64088473	64088473	T	C	ENSMUST00000105439.1	1	ENSMUSG00000042846	missense	N/S	305	Lrrtm3	ENSMUST00000105439.1:c.914A>G	ENSMUSP00000101079.1:p.Asn305Ser	H-2-Kb	8	8	4	ISLSDISL	ISLNDISL	SMMPMBEC	200.789	221.687	1.104	171	0.234	390.398	390.71	1.001	552.47	559.11	1447.6	1163.3	228.9496585	221.6868845	221.6868845	200.7890385	M2	0.885714286	0.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.236	171	0	0	NA	10qB4	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	0.991752469	sgMsh2	cell line
chr1	154633618	154633618	A	G	ENSMUST00000187541.6	1	ENSMUSG00000004110	missense	L/P	297	Cacna1e	ENSMUST00000187541.6:c.890T>C	ENSMUSP00000140937.1:p.Leu297Pro	H-2-Kb	8	8	4	DNIPFAVL	DNILFAVL	SMM	178.131	93.485	0.525	75	0.253	412.973	165.678	0.401	220.76	608.34	374.2	572	93.48458404	178.1312026	110.5961477	253.9451951	M2	1.714285714	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.243	75	0	0	NA	1qG3	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr1	151351713	151351713	T	C	ENSMUST00000023918.12	1	ENSMUSG00000023150	missense	Y/H	91	Ivns1abp	ENSMUST00000023918.12:c.271T>C	ENSMUSP00000023918.6:p.Tyr91His	H-2-Kb	9	7	5	LNYAHTAQL	LNYAYTAQL	NetMHCpan	10.4	5.2	0.5	136	0.294	31.415	21.341	0.679	6.52	17.41	5.2	10.4	48.31811688	60.27122243	36.16179668	45.42030017	M2	-0.185714286	-0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.286	136	238	46	0.193277311	1qG1	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr10	40227566	40227566	T	G	ENSMUST00000183309.7	1	ENSMUSG00000038510	missense	S/R	197	Rpf2	ENSMUST00000183309.7:c.589A>C	ENSMUSP00000138581.1:p.Ser197Arg	H-2-Kb	9	7	5	VYFRRYKLL	VYFRSYKLL	SMM	18.035	62.103	3.443	147	0.306	20.457	61.271	2.995	60.44	22.11	37.5	28	62.10263106	18.03474475	72.98775406	18.8039895	M2	-0.542857143	-0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.311	147	129	33	0.255813953	10qB1	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr1	174159275	174159275	CT	C	ENSMUST00000213748.1	5	ENSMUSG00000055033	FS	P/X	167	Olfr420	ENSMUST00000213748.1:c.505del	ENSMUSP00000149052.1:p.Cys169ValfsTer29	H-2-Kb	9	8	6	STLPFVALI	STLPFCGSN	NetMHC	44.31	10298.74	232.425	202	0.228	257.552	4821.119	18.719	10298.74	44.31	6314.8	57.9	3327.438214	457.2039776	1987.238535	498.023688	M2	2.757142857	2.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.224	202	0	0	NA	1qH3	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.941324377	sgMsh2	cell line
chr10	26271888	26271888	T	C	ENSMUST00000060716.5	5	ENSMUSG00000051354	missense	L/P	487	Samd3	ENSMUST00000060716.5:c.1460T>C	ENSMUSP00000057805.5:p.Leu487Pro	H-2-Kb	9	6	6	QTFNFPETL	QTFNFLETL	NetMHC	70.68	27.41	0.388	122	0.205	201.184	82.234	0.409	27.41	70.68	32	90.4	132.4677013	311.967965	170.7064772	407.6148523	M2	0.014285714	0.014285714	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.217	122	0	0	NA	10qA4	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	0.91190799	sgMsh2	cell line
chr1	174159275	174159275	CT	C	ENSMUST00000213748.1	5	ENSMUSG00000055033	FS	P/X	167	Olfr420	ENSMUST00000213748.1:c.505del	ENSMUSP00000149052.1:p.Cys169ValfsTer29	H-2-Kb	9	7	7	ISTLPFVAL	ISTLPFCGS	NetMHC	78.09	5561.62	71.221	202	0.228	184.799	3286.804	17.786	5561.62	78.09	4497.5	111.9	1000.253316	257.6973782	2076.108278	291.2393144	M2	2.014285714	2.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.224	202	0	0	NA	1qH3	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.941324377	sgMsh2	cell line
chr1	174430463	174430463	GT	G	ENSMUST00000192358.2	2	ENSMUSG00000051509	FS	F/X	12	Olfr414	ENSMUST00000192358.2:c.36del	ENSMUSP00000142051.1:p.Phe12LeufsTer26	H-2-Kb	9	11	1	LSWWGFLPL	NA	NetMHCpan	41.6	NA	NA	127	0.276	105.058	NA	NA	NA	80.92	NA	41.6	NA	179.9326599	NA	129.1962773	M2	0.942857143	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.288	127	0	0	NA	1qH3	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr10	40227566	40227566	T	G	ENSMUST00000183309.7	1	ENSMUSG00000038510	missense	S/R	197	Rpf2	ENSMUST00000183309.7:c.589A>C	ENSMUSP00000138581.1:p.Ser197Arg	H-2-Kb	9	6	6	KVYFRRYKL	KVYFRSYKL	NetMHCpan	75.3	43.7	0.58	147	0.306	113.64	99.694	0.877	94.89	98.38	43.7	75.3	104.4984864	137.4390042	121.4087534	128.8991341	M2	-1.271428571	-1.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.311	147	129	33	0.255813953	10qB1	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr1	174430463	174430463	GT	G	ENSMUST00000192358.2	2	ENSMUSG00000051509	FS	F/X	12	Olfr414	ENSMUST00000192358.2:c.36del	ENSMUSP00000142051.1:p.Phe12LeufsTer26	H-2-Kb	9	26	0	SLFSFLQFI	NA	NetMHCpan	69.9	NA	NA	127	0.276	259.458	NA	NA	NA	138.63	NA	69.9	NA	380.2857045	NA	519.0987702	M2	1.771428571	1.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.288	127	0	0	NA	1qH3	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr1	174430463	174430463	GT	G	ENSMUST00000192358.2	2	ENSMUSG00000051509	FS	F/X	12	Olfr414	ENSMUST00000192358.2:c.36del	ENSMUSP00000142051.1:p.Phe12LeufsTer26	H-2-Kb	9	25	0	SSLFSFLQF	NA	NetMHC	188.25	NA	NA	127	0.276	212.798	NA	NA	NA	188.25	NA	208.2	NA	259.483651	NA	217.3952246	M2	1.671428571	1.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.288	127	0	0	NA	1qH3	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr10	50754122	50754122	G	T	ENSMUST00000035606.9	5	ENSMUSG00000038774	missense	S/I	1769	Ascc3	ENSMUST00000035606.9:c.5306G>T	ENSMUSP00000036726.8:p.Ser1769Ile	H-2-Kb	9	7	5	IMNPIYYSL	IMNPSYYSL	NetMHCpan	106.8	122.5	1.147	123	0.244	213.697	155.456	0.727	120.49	198.25	122.5	106.8	188.4126249	229.1447967	231.3396105	261.9690589	M2	-0.028571429	0.457142857	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.254	123	102	13	0.12745098	10qB3	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr1	173270231	173270231	A	G	ENSMUST00000213420.1	5	ENSMUSG00000049605	missense	S/G	19	Olfr418	ENSMUST00000213420.1:c.55A>G	ENSMUSP00000150427.1:p.Ser19Gly	H-2-Kb	9	4	8	FVFQGFSGF	FVFQGFSSF	NetMHCpan	196.3	191.2	0.974	156	0.058	310.099	338.26	1.091	338.26	307.51	191.2	196.3	350.8407252	312.6871254	338.259498	332.8511027	M2	0.471428571	1.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.067	156	0	0	NA	1qH3	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.281556845	sgMsh2	cell line
chr10	4106413	4106413	C	T	ENSMUST00000120585.7	1	ENSMUSG00000040675	missense	H/Y	910	Mthfd1l	ENSMUST00000120585.7:c.2728C>T	ENSMUSP00000112897.1:p.His910Tyr	H-2-Kb	9	6	6	CMAKTYLSL	CMAKTHLSL	SMM	219.842	769.325	3.499	62	0.274	379.425	1154.62	3.043	1240.54	411.65	1068.7	347.2	769.3252737	219.8416627	1433.01257	449.0037829	M2	0.385714286	0.585714286	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.27	62	202	47	0.232673267	10qA1	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr10	23897365	23897365	T	C	ENSMUST00000041416.7	1	ENSMUSG00000037440	missense	Y/H	97	Vnn1	ENSMUST00000041416.7:c.289T>C	ENSMUSP00000040599.7:p.Tyr97His	H-2-Kb	9	7	5	TIYPHLEEI	TIYPYLEEI	NetMHCpan	162.8	59.8	0.367	56	0.232	280.695	187.481	0.668	155.05	490.72	59.8	162.8	228.6177783	285.1740477	219.9125427	276.216743	M2	-0.685714286	-0.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.255	56	521	97	0.186180422	10qA4	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr11	36008549	36008549	T	C	ENSMUST00000102801.7	5	ENSMUSG00000049336	missense	Y/C	2594	Tenm2	ENSMUST00000102801.7:c.7781A>G	ENSMUSP00000099865.1:p.Tyr2594Cys	H-2-Db	9	5	7	SVLNNACYL	SVLNNAYYL	NetMHCpan	29.4	22.1	0.752	140	0.243	58.079	41.36	0.712	16.41	35.69	22.1	29.4	60.62056782	80.46740575	79.53714539	98.30373071	M2	0.514285714	0.642857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.24	140	0	0	NA	11qA4	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr11	43556667	43556667	G	T	ENSMUST00000050574.6	1	ENSMUSG00000044707	missense	R/L	59	Ccnjl	ENSMUST00000050574.6:c.176G>T	ENSMUSP00000058111.6:p.Arg59Leu	H-2-Db	9	9	3	SALHLAIYL	SARHLAIYL	NetMHC	172.76	6022.1	34.858	60	0.233	214.407	4374.189	20.401	6022.1	172.76	8244.8	501.5	2082.667788	190.8182902	2726.277127	237.9961875	M2	1.885714286	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.241	60	0	0	NA	11qB1.1	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr10	129856980	129856980	T	A	ENSMUST00000204622.2	5	ENSMUSG00000052818	missense	I/N	154	Olfr813	ENSMUST00000204622.2:c.461T>A	ENSMUSP00000145260.2:p.Ile154Asn	H-2-Db	9	7	5	GFLVNFPPL	GFLVIFPPL	SMM	53.042	2509.69	47.315	369	0.249	340.624	7036.526	20.658	14000.11	618.36	11000	719.4	2509.689537	53.04201329	3073.052643	62.88832099	M2	1.128571429	1.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.257	369	0	0	NA	10qD3	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	sgMsh2	cell line
chr11	51007844	51007844	C	A	ENSMUST00000213415.1	5	ENSMUSG00000060918	missense	L/M	291	Olfr51	ENSMUST00000213415.1:c.871C>A	ENSMUSP00000151005.1:p.Leu291Met	H-2-Db	9	9	3	YSMRNRDIK	YSLRNRDIK	SMM	203.526	184.34	0.906	150	0.2	430.983	440.773	1.023	683.59	644.91	3687.6	2110.9	184.3401769	203.5260481	197.9566064	217.0551027	M2	-1.928571429	-1.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.21	150	0	0	NA	11qB1.3	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	0.882491604	sgMsh2	cell line
chr10	90510766	90510766	A	T	ENSMUST00000183156.7	5	ENSMUSG00000058589	missense	N/Y	643	Anks1b	ENSMUST00000183156.7:c.1927A>T	ENSMUSP00000138539.1:p.Asn643Tyr	H-2-Kb	8	7	5	ASLAYSPL	ASLANSPL	NetMHC	3.67	417.18	113.673	151	0.278	7.854	301.425	38.376	417.18	3.67	594.1	7.3	185.6692572	8.408915726	172.0838049	8.764759423	M2	0.7	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.275	151	0	0	NA	10qC2	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr10	129501829	129501829	T	C	ENSMUST00000218901.1	NA	ENSMUSG00000044025	missense	F/S	315	Olfr790	ENSMUST00000218901.1:c.944T>C	ENSMUSP00000151759.1:p.Phe315Ser	H-2-Kb	8	13	2	ISFSSKNL	IFFSSKNL	NetMHCpan	18.5	115.8	6.259	57	0.298	19.094	83.126	4.354	110.95	18.52	115.8	18.5	45.89231861	19.66708524	55.30189331	20.68902384	M2	-0.457142857	-0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.333	57	0	0	NA	10qD3	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	2	1	sgMsh2	cell line
chr10	127170070	127170070	CT	C	ENSMUST00000006914.10	1	ENSMUSG00000006731	FS	F/X	302	B4galnt1	ENSMUST00000006914.10:c.907del	ENSMUSP00000006914.9:p.Tyr303ThrfsTer6	H-2-Kb	8	6	7	ASIRRFTL	ASIRRFYP	NetMHC	29	3440.11	118.624	146	0.212	210.968	4453.498	21.11	3440.11	29	1848.8	57.4	6176.465217	435.2512229	5466.885777	364.5356443	M2	0.085714286	0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.209	146	61	8	0.131147541	10qD3	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	0.878289263	sgMsh2	cell line
chr10	129626025	129626025	A	G	ENSMUST00000204979.2	2	ENSMUSG00000095002	missense	L/P	12	Olfr798	ENSMUST00000204979.2:c.35T>C	ENSMUSP00000144716.1:p.Leu12Pro	H-2-Kb	8	5	7	SVSEFIPL	SVSEFILL	NetMHC	38.39	159.69	4.16	81	0.259	72.402	215.586	2.978	159.69	38.39	96.3	42.3	271.4813499	102.5038081	318.9627742	115.8083836	M2	1.342857143	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.26	81	0	0	NA	10qD3	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	sgMsh2	cell line
chr10	129768203	129768203	CT	C	ENSMUST00000203236.2	2	ENSMUSG00000049894	FS	F/X	236	Olfr808	ENSMUST00000203236.2:c.709del	ENSMUSP00000145315.1:p.Ser237ProfsTer7	H-2-Kb	8	9	4	KAFPLVPL	NA	NetMHCpan	64.6	NA	NA	100	0.31	93.483	NA	NA	NA	81.59	NA	64.6	NA	105.3755853	NA	121.2662646	M2	1.885714286	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.305	100	0	0	NA	10qD3	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	sgMsh2	cell line
chr11	34688463	34688463	A	T	ENSMUST00000093193.11	1	ENSMUSG00000020143	missense	L/M	708	Dock2	ENSMUST00000093193.11:c.2122T>A	ENSMUSP00000090884.5:p.Leu708Met	H-2-Kb	8	9	3	ATMAYKKL	ATLAYKKL	NetMHCpan	62.7	80.7	1.287	168	0.262	117.441	94.582	0.805	84.03	96.29	80.7	62.7	118.7790917	204.0515979	105.1332282	138.5925865	M2	-0.328571429	-0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.271	168	0	0	NA	11qA4	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr10	129856980	129856980	T	A	ENSMUST00000204622.2	5	ENSMUSG00000052818	missense	I/N	154	Olfr813	ENSMUST00000204622.2:c.461T>A	ENSMUSP00000145260.2:p.Ile154Asn	H-2-Kb	8	8	4	FLVNFPPL	FLVIFPPL	SMMPMBEC	145.124	134.816	0.929	369	0.249	153.035	161.385	1.055	239.31	151.27	172.2	154.8	150.5705372	157.3040847	134.8155538	145.1242539	M2	1.128571429	1.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.257	369	0	0	NA	10qD3	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	sgMsh2	cell line
chr10	105829867	105829867	T	C	ENSMUST00000046638.9	1	ENSMUSG00000036009	missense	D/G	166	Mettl25	ENSMUST00000046638.9:c.497A>G	ENSMUSP00000038665.9:p.Asp166Gly	H-2-Kb	8	8	4	SIAGYCGL	SIADYCGL	SMM	158.03	124.377	0.787	187	0.273	194.024	156.532	0.807	113.81	165.85	225.4	278.7	124.3769779	158.0301673	188.68614	222.1979255	M2	1.5	1.5	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.287	187	21	3	0.142857143	10qD1	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr10	80721625	80721625	G	A	ENSMUST00000020420.8	1	ENSMUSG00000020198	missense	S/F	291	Ap3d1	ENSMUST00000020420.8:c.872C>T	ENSMUSP00000020420.7:p.Ser291Phe	H-2-Kb	8	7	5	LISLFSGM	LISLSSGM	NetMHC	261.61	10172.38	38.884	56	0.232	433.854	11377.05	26.223	10172.38	261.61	7940.4	276.5	12581.71954	661.8201718	12815.63117	591.2075887	M2	1.571428571	1.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.22	56	66	11	0.166666667	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	0.924515013	sgMsh2	cell line
chr10	129856980	129856980	T	A	ENSMUST00000204622.2	5	ENSMUSG00000052818	missense	I/N	154	Olfr813	ENSMUST00000204622.2:c.461T>A	ENSMUSP00000145260.2:p.Ile154Asn	H-2-Kb	8	10	2	VNFPPLAM	VIFPPLAM	NetMHCpan	143	167	1.168	369	0.249	312.226	317.317	1.016	326.5	281.1	167	143	308.1342684	343.3523309	504.3592613	603.5871704	M2	0.514285714	0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.257	369	0	0	NA	10qD3	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	sgMsh2	cell line
chr10	81509375	81509375	A	G	ENSMUST00000043709.7	1	ENSMUSG00000034792	missense	W/R	219	Gna15	ENSMUST00000043709.7:c.655T>C	ENSMUSP00000049175.7:p.Trp219Arg	H-2-Kb	8	11	1	RIHCFENV	WIHCFENV	SMM	346.529	467.455	1.349	102	0.206	369.99	655.698	1.772	843.94	365.18	1509.8	374.8	467.4552051	346.5293309	451.5855118	392.4099402	M2	0.542857143	0.542857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.213	102	0	0	NA	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	0.895098626	sgMsh2	cell line
chr11	50237259	50237259	T	A	ENSMUST00000102772.3	1	ENSMUSG00000020377	missense	N/I	55	Ltc4s	ENSMUST00000102772.3:c.164A>T	ENSMUSP00000099833.3:p.Asn55Ile	H-2-Kb	8	11	1	ICSEYFPL	NCSEYFPL	SMMPMBEC	163.207	1944.196	11.912	39	0.256	262.12	3149.402	12.015	8197	536.95	3700.2	307.1	2598.603386	217.1400833	1944.195797	163.2074578	M2	0.271428571	0.371428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.284	39	7	1	0.142857143	11qB1.3	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr10	130472110	130472110	CA	C	ENSMUST00000164227.3	5	ENSMUSG00000091511	FS	L/X	753	Vmn2r87	ENSMUST00000164227.3:c.2258del	ENSMUSP00000129215.2:p.Leu753TrpfsTer25	H-2-Kb	8	15	0	ASLWLSWL	NA	SMM	312.421	NA	NA	345	0.281	407.641	NA	NA	NA	717.62	NA	457.4	NA	312.4208431	NA	357.8821189	M2	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.281	345	0	0	NA	10qD3	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	sgMsh2	cell line
chr10	130472110	130472110	CA	C	ENSMUST00000164227.3	5	ENSMUSG00000091511	FS	L/X	753	Vmn2r87	ENSMUST00000164227.3:c.2258del	ENSMUSP00000129215.2:p.Leu753TrpfsTer25	H-2-Kb	8	19	0	LSWLGTFL	NA	SMMPMBEC	307.426	NA	NA	345	0.281	420.694	NA	NA	NA	1101.66	NA	318.1	NA	523.2870654	NA	307.4255792	M2	1.085714286	1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.281	345	0	0	NA	10qD3	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	sgMsh2	cell line
chr11	34688463	34688463	A	T	ENSMUST00000093193.11	1	ENSMUSG00000020143	missense	L/M	708	Dock2	ENSMUST00000093193.11:c.2122T>A	ENSMUSP00000090884.5:p.Leu708Met	H-2-Kb	9	11	1	MAYKKLMTV	LAYKKLMTV	NetMHCpan	53.3	93.4	1.752	168	0.262	111.459	136.253	1.222	92.9	63.29	93.4	53.3	179.1059444	159.628341	191.9773533	191.9773533	M2	0.014285714	0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.271	168	0	0	NA	11qA4	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr10	129626025	129626025	A	G	ENSMUST00000204979.2	2	ENSMUSG00000095002	missense	L/P	12	Olfr798	ENSMUST00000204979.2:c.35T>C	ENSMUSP00000144716.1:p.Leu12Pro	H-2-Kb	9	4	8	TSVSEFIPL	TSVSEFILL	NetMHC	66.41	157	2.364	81	0.259	133.399	221.183	1.658	157	66.41	211.1	85.2	231.2650474	181.5975563	301.4740949	216.3963843	M2	1.342857143	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.26	81	0	0	NA	10qD3	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	sgMsh2	cell line
chr10	80721625	80721625	G	A	ENSMUST00000020420.8	1	ENSMUSG00000020198	missense	S/F	291	Ap3d1	ENSMUST00000020420.8:c.872C>T	ENSMUSP00000020420.7:p.Ser291Phe	H-2-Kb	9	6	6	VLISLFSGM	VLISLSSGM	NetMHCpan	53.3	550.7	10.332	56	0.232	167.709	716.736	4.274	769.56	102.55	550.7	53.3	663.9112074	232.8681001	1067.21028	301.4740949	M2	1.571428571	2.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.22	56	66	11	0.166666667	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	0.924515013	sgMsh2	cell line
chr11	34688463	34688463	A	T	ENSMUST00000093193.11	1	ENSMUSG00000020143	missense	L/M	708	Dock2	ENSMUST00000093193.11:c.2122T>A	ENSMUSP00000090884.5:p.Leu708Met	H-2-Kb	9	3	9	IQQHFSATM	IQQHFSATL	NetMHC	108.3	43.99	0.406	168	0.262	432.806	302.966	0.7	43.99	108.3	87	183.1	518.9314595	682.5115418	629.8686601	853.5913393	M2	-0.242857143	-0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.271	168	0	0	NA	11qA4	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr11	50237259	50237259	T	A	ENSMUST00000102772.3	1	ENSMUSG00000020377	missense	N/I	55	Ltc4s	ENSMUST00000102772.3:c.164A>T	ENSMUSP00000099833.3:p.Asn55Ile	H-2-Kb	9	10	2	VICSEYFPL	VNCSEYFPL	SMM	116.174	87.722	0.755	39	0.256	137.523	100.849	0.733	107.02	148.79	115.7	213.3	87.72229799	116.1742828	94.67820161	126.255411	M2	0.271428571	1.2	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.284	39	7	1	0.142857143	11qB1.3	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr10	85629240	85629240	C	T	ENSMUST00000105307.7	1	ENSMUSG00000020042	missense	S/F	648	Btbd11	ENSMUST00000105307.7:c.1943C>T	ENSMUSP00000100944.1:p.Ser648Phe	H-2-Kb	9	4	8	STPHKYPFV	STPHKYPSV	NetMHC	178.72	171.57	0.96	127	0.26	437.835	307.672	0.703	171.57	178.72	282.6	429.9	332.7438214	445.7691405	346.1385739	469.0833305	M2	-0.657142857	-0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.257	127	31	6	0.193548387	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr10	105829867	105829867	T	C	ENSMUST00000046638.9	1	ENSMUSG00000036009	missense	D/G	166	Mettl25	ENSMUST00000046638.9:c.497A>G	ENSMUSP00000038665.9:p.Asp166Gly	H-2-Kb	9	7	5	CSIAGYCGL	CSIADYCGL	NetMHCpan	192.9	505.7	2.622	187	0.273	330.741	580.265	1.754	610.85	223.85	505.7	192.9	549.6800816	437.6329367	650.5040428	548.5926694	M2	1.5	1.5	TRUE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.287	187	21	3	0.142857143	10qD1	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr11	6415926	6415926	G	A	ENSMUST00000132846.1	1	ENSMUSG00000071866	missense	V/M	6	Ppia	ENSMUST00000132846.1:c.16G>A	ENSMUSP00000117987.1:p.Val6Met	H-2-Kb	9	2	5	VNPTMFFDI	VNPTVFFDI	NetMHCpan	217.2	457.5	2.106	75	0.267	337.958	1022.648	3.026	973.16	292.87	457.5	217.2	1276.762152	394.5572246	1072.136299	383.0451784	M2	0.885714286	0.885714286	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.273	75	12	2	0.166666667	11qA1	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr10	130472110	130472110	CA	C	ENSMUST00000164227.3	5	ENSMUSG00000091511	FS	L/X	753	Vmn2r87	ENSMUST00000164227.3:c.2258del	ENSMUSP00000129215.2:p.Leu753TrpfsTer25	H-2-Kb	9	9	3	GSWLWGASL	NA	NetMHCpan	270.2	NA	NA	345	0.281	374.862	NA	NA	NA	300.72	NA	270.2	NA	563.7804345	NA	449.0037829	M2	0.914285714	0.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.281	345	0	0	NA	10qD3	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	sgMsh2	cell line
chr10	103173380	103173380	T	C	ENSMUST00000166240.7	5	ENSMUSG00000019892	missense	T/A	1081	Lrriq1	ENSMUST00000166240.7:c.3241A>G	ENSMUSP00000131419.1:p.Thr1081Ala	H-2-Kb	9	7	5	SILKALPAL	SILKTLPAL	NetMHCpan	362.2	417.3	1.152	85	0.306	466.509	445.286	0.955	273.85	365.33	417.3	362.2	473.271116	567.6883738	716.5557742	802.1396792	M2	1.357142857	1.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.308	85	0	0	NA	10qD1	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr10	129856980	129856980	T	A	ENSMUST00000204622.2	5	ENSMUSG00000052818	missense	I/N	154	Olfr813	ENSMUST00000204622.2:c.461T>A	ENSMUSP00000145260.2:p.Ile154Asn	H-2-Kb	9	7	5	GFLVNFPPL	GFLVIFPPL	SMM	339.711	479.855	1.413	369	0.249	407.546	743.158	1.823	1350.12	409.35	941.5	854.3	479.854973	339.7113053	544.816184	405.7420321	M2	1.128571429	1.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.257	369	0	0	NA	10qD3	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	sgMsh2	cell line
chr10	130472110	130472110	CA	C	ENSMUST00000164227.3	5	ENSMUSG00000091511	FS	L/X	753	Vmn2r87	ENSMUST00000164227.3:c.2258del	ENSMUSP00000129215.2:p.Leu753TrpfsTer25	H-2-Kb	9	17	0	LWLSWLGTF	NA	SMM	245.533	NA	NA	345	0.281	456.634	NA	NA	NA	499.03	NA	2307.2	NA	245.5330734	NA	414.2380608	M2	1.085714286	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.281	345	0	0	NA	10qD3	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	sgMsh2	cell line
chr11	58757857	58757857	G	A	ENSMUST00000215071.1	5	ENSMUSG00000107677	missense	S/N	64	Olfr316	ENSMUST00000215071.1:c.191G>A	ENSMUSP00000151136.1:p.Ser64Asn	H-2-Db	9	7	5	YFLLNQLSI	YFLLSQLSI	SMM	53.164	1078.003	20.277	397	0.093	141.124	3409.713	24.161	8143.16	200.67	5247	352.8	1078.003076	53.16428776	1572.425217	81.57742638	M2	1.157142857	1.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.093	397	0	0	NA	11qB1.3	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	0.39081771	sgMsh2	cell line
chr11	95969851	95969851	T	G	ENSMUST00000013559.2	1	ENSMUSG00000013415	missense	S/R	359	Igf2bp1	ENSMUST00000013559.2:c.1075A>C	ENSMUSP00000013559.2:p.Ser359Arg	H-2-Db	9	8	4	AAMRLQSHL	AAMSLQSHL	SMM	336.217	330.842	0.984	79	0.266	466.447	489.283	1.049	583.59	561.66	681.7	531.5	330.8415143	336.2172565	394.9753567	401.39319	M2	-0.357142857	0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.272	79	65	12	0.184615385	11qD	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr11	66094123	66094123	T	C	ENSMUST00000080665.9	5	ENSMUSG00000056752	missense	R/G	1207	Dnah9	ENSMUST00000080665.9:c.3619A>G	ENSMUSP00000079494.3:p.Arg1207Gly	H-2-Kb	8	10	2	VGQQVAPL	VRQQVAPL	SMM	66.182	315.312	4.764	84	0.155	74.627	1070.287	14.342	1743.62	66.89	2996.9	350.4	315.3116375	66.18201718	396.9538331	82.36448742	M2	0.114285714	0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.167	84	0	0	NA	11qB3	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	0.701790942	sgMsh2	cell line
chr11	58757857	58757857	G	A	ENSMUST00000215071.1	5	ENSMUSG00000107677	missense	S/N	64	Olfr316	ENSMUST00000215071.1:c.191G>A	ENSMUSP00000151136.1:p.Ser64Asn	H-2-Kb	8	6	6	MYFLLNQL	MYFLLSQL	NetMHCpan	183.7	77.4	0.421	397	0.093	238.921	133.441	0.559	129.56	253.53	77.4	183.7	148.8469706	240.8463117	137.3219621	236.9954455	M2	0.842857143	0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.093	397	0	0	NA	11qB1.3	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	0.39081771	sgMsh2	cell line
chr11	72058021	72058021	G	A	ENSMUST00000075258.12	1	ENSMUSG00000040543	missense	R/W	769	Pitpnm3	ENSMUST00000075258.12:c.2305C>T	ENSMUSP00000074737.6:p.Arg769Trp	H-2-Kb	8	9	3	VVWHWQDL	VVRHWQDL	NetMHCpan	164	1200.7	7.321	103	0.155	222.002	907.754	4.089	1202.31	270.69	1200.7	164	614.8086937	260.4593785	592.570463	183.5439188	M2	-0.571428571	-0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.165	103	1	1	1	11qB4	chr11-69590981-82929860	4	3	1	0.99	4.160317559	NA	1	0.69338626	sgMsh2	cell line
chr11	57528173	57528173	A	T	ENSMUST00000020830.13	1	ENSMUSG00000020522	missense	D/V	53	Mfap3	ENSMUST00000020830.13:c.158A>T	ENSMUSP00000020830.7:p.Asp53Val	H-2-Kb	8	4	8	SAGSYSGV	SAGSYSGD	NetMHC	397.02	22519.42	56.721	121	0.281	446.118	12796.838	28.685	22519.42	397.02	29869.5	1113.8	3074.255792	459.9811133	2458.895091	432.2549746	M2	0.328571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.273	121	50	12	0.24	11qB1.3	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr11	69881687	69881687	G	T	ENSMUST00000001631.6	1	ENSMUSG00000001588	missense	L/I	721	Acap1	ENSMUST00000001631.6:c.2161C>A	ENSMUSP00000001631.6:p.Leu721Ile	H-2-Kb	8	5	7	IFRDFSIM	IFRDFSLM	SMM	352.16	162.832	0.462	85	0.212	476.2	176.466	0.371	142.5	510.6	190.1	441.8	162.832091	352.1599796	219.1492557	544.1767718	M2	0.457142857	0.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	85	3	1	0.333333333	11qB3	chr11-69590981-82929860	4	3	1	0.99	4.160317559	NA	1	0.9539314	sgMsh2	cell line
chr11	79471482	79471482	A	G	ENSMUST00000071325.8	2	ENSMUSG00000020716	missense	N/S	1495	Nf1	ENSMUST00000071325.8:c.4484A>G	ENSMUSP00000071289.2:p.Asn1495Ser	H-2-Kb	8	10	2	VSHSLSFI	VNHSLSFI	SMMPMBEC	446.416	930.551	2.084	120	0.058	468.63	910.634	1.943	1346.83	623.85	577.3	455.6	890.7175307	481.6593553	930.550614	446.4162552	M2	0.785714286	0.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.075	120	56	2	0.035714286	11qB5	chr11-69590981-82929860	4	3	1	0.99	4.160317559	NA	1	0.315175573	sgMsh2	cell line
chr11	117772845	117772845	T	C	ENSMUST00000026659.9	1	ENSMUSG00000025572	missense	I/V	514	Tmc6	ENSMUST00000026659.9:c.1540A>G	ENSMUSP00000026659.3:p.Ile514Val	H-2-Kb	8	10	2	LVLKMAVL	LILKMAVL	SMMPMBEC	395.13	281.67	0.713	58	0.19	457.257	401.56	0.878	565.93	825.08	490.7	423.9	312.4208431	490.6140712	281.6696149	395.1299959	M2	2.257142857	2.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.201	58	30	8	0.266666667	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	0.844670535	sgMsh2	cell line
chr11	120134832	120134832	A	G	ENSMUST00000103018.10	1	ENSMUSG00000061306	missense	M/T	226	Slc38a10	ENSMUST00000103018.10:c.677T>C	ENSMUSP00000099307.4:p.Met226Thr	H-2-Kb	9	11	1	TSSIFASSL	MSSIFASSL	NetMHCpan	80.7	63.8	0.791	124	0.282	321.872	325.304	1.011	80.3	100.18	63.8	80.7	570.3087043	561.1900987	641.5787927	543.5631415	M2	1.5	1.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.284	124	65	16	0.246153846	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr11	86661194	86661194	A	G	ENSMUST00000018315.9	1	ENSMUSG00000018171	missense	Y/H	115	Vmp1	ENSMUST00000018315.9:c.343T>C	ENSMUSP00000018315.3:p.Tyr115His	H-2-Kb	9	7	5	LLYAHWIGL	LLYAYWIGL	NetMHCpan	66.1	64.6	0.977	113	0.186	122.818	88.463	0.72	68.97	110.04	64.6	66.1	130.6501763	162.970876	107.9567993	135.5969747	M2	0.614285714	1.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.168	113	364	85	0.233516484	11qC	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	0.705993283	sgMsh2	cell line
chr11	67211360	67211360	C	A	ENSMUST00000124516.7	1	ENSMUSG00000056328	missense	R/S	826	Myh1	ENSMUST00000124516.7:c.2476C>A	ENSMUSP00000117569.1:p.Arg826Ser	H-2-Kb	9	6	6	IQYNVSAFM	IQYNVRAFM	NetMHC	125.35	144.71	1.154	222	0.207	385.659	420.869	1.091	144.71	125.35	131.9	140.2	830.0609824	631.1171763	697.02764	656.5230826	M2	0.728571429	0.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.203	222	0	0	NA	11qB3	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	0.853075217	sgMsh2	cell line
chr11	61546578	61546578	A	C	ENSMUST00000179936.7	1	ENSMUSG00000001036	missense	I/S	56	Epn2	ENSMUST00000179936.7:c.167T>G	ENSMUSP00000136950.1:p.Ile56Ser	H-2-Kb	9	6	6	VAFSESMSM	VAFSEIMSM	NetMHCpan	123.9	82.3	0.664	76	0.224	145.532	154.465	1.061	140.62	155.51	82.3	123.9	168.310031	135.5532704	254.8296748	263.7849417	M2	0.1	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.24	76	144	31	0.215277778	11qB2	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr11	116047690	116047690	T	C	ENSMUST00000021116.11	1	ENSMUSG00000020770	missense	F/L	40	Unk	ENSMUST00000021116.11:c.118T>C	ENSMUSP00000021116.5:p.Phe40Leu	H-2-Kb	9	3	9	QHYTYLKEL	QHYTYLKEF	NetMHC	157.48	600.28	3.812	108	0.213	176.351	480.118	2.723	600.28	157.48	601.2	194.9	266.1399065	157.8010905	359.9564831	208.0894201	M2	-0.442857143	-0.442857143	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.215	108	24	5	0.208333333	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	0.903503308	sgMsh2	cell line
chr11	95969851	95969851	T	G	ENSMUST00000013559.2	1	ENSMUSG00000013415	missense	S/R	359	Igf2bp1	ENSMUST00000013559.2:c.1075A>C	ENSMUSP00000013559.2:p.Ser359Arg	H-2-Kb	9	8	4	AAMRLQSHL	AAMSLQSHL	NetMHC	159.08	222.94	1.401	79	0.266	409.595	316.523	0.773	222.94	159.08	226.5	212.3	406.5462879	606.8900259	544.816184	635.696763	M2	-0.357142857	0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.272	79	65	12	0.184615385	11qD	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr11	87035223	87035223	T	C	ENSMUST00000020804.7	1	ENSMUSG00000061666	missense	T/A	299	Gdpd1	ENSMUST00000020804.7:c.895A>G	ENSMUSP00000020804.7:p.Thr299Ala	H-2-Kb	9	9	3	VMADYPTKL	VMTDYPTKL	NetMHCpan	134	233	1.739	74	0.176	178.725	248.628	1.391	288.51	222.06	233	134	258.8868552	177.8729877	238.3691237	179.5767056	M2	-0.771428571	0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.194	74	198	45	0.227272727	11qC	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	0.815254148	sgMsh2	cell line
chr11	69944246	69944246	A	G	ENSMUST00000018710.12	1	ENSMUSG00000018566	missense	M/T	380	Slc2a4	ENSMUST00000018710.12:c.1139T>C	ENSMUSP00000018710.6:p.Met380Thr	H-2-Kb	9	11	1	TSYVSIVAI	MSYVSIVAI	NetMHCpan	173.5	137.8	0.794	41	0.268	288.038	313.641	1.089	235.44	232.32	137.8	173.5	391.8411118	385.5760057	405.7420321	343.7557727	M2	2.442857143	2.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.261	41	0	0	NA	11qB3	chr11-69590981-82929860	4	3	1	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr11	58757857	58757857	G	A	ENSMUST00000215071.1	5	ENSMUSG00000107677	missense	S/N	64	Olfr316	ENSMUST00000215071.1:c.191G>A	ENSMUSP00000151136.1:p.Ser64Asn	H-2-Kb	9	5	7	PMYFLLNQL	PMYFLLSQL	SMM	69.841	60.969	0.873	397	0.093	256.406	183.625	0.716	298.82	430.35	478.1	884.5	60.9691303	69.84092778	68.43054518	82.46126636	M2	0.842857143	0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.093	397	0	0	NA	11qB1.3	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	0.39081771	sgMsh2	cell line
chr11	102061618	102061618	G	A	ENSMUST00000017458.10	1	ENSMUSG00000017314	missense	A/V	343	Mpp2	ENSMUST00000017458.10:c.1028C>T	ENSMUSP00000017458.3:p.Ala343Val	H-2-Kb	9	5	7	LIYEEVVRM	LIYEEVARM	NetMHCpan	384	183	0.477	39	0.41	422.457	242.216	0.573	185.13	506.32	183	384	299.3022626	431.6283877	304.9650004	413.2853397	M2	-0.357142857	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.428	39	5	0	0	11qD	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	2	1	sgMsh2	cell line
chr11	114987405	114987405	T	G	ENSMUST00000045075.2	1	ENSMUSG00000034641	missense	T/P	94	Cd300ld	ENSMUST00000045075.2:c.280A>C	ENSMUSP00000047022.2:p.Thr94Pro	H-2-Kb	9	4	8	RDFIFTVPM	RDFIFTVTM	SMMPMBEC	413.285	752.056	1.82	272	0.213	465.648	927.044	1.991	2749.39	1529.58	988.9	447	865.1870294	484.2950164	752.0556875	413.2853397	M2	1.985714286	1.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.215	272	0	0	NA	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	0.903503308	sgMsh2	cell line
chr11	121160505	121160505	T	C	ENSMUST00000039044.1	NA	ENSMUSG00000039321	missense	V/A	65	Uts2r	ENSMUST00000039044.1:c.194T>C	ENSMUSP00000046920.1:p.Val65Ala	H-2-Db	9	10	2	GAVGNVYTL	GVVGNVYTL	NetMHC	17.26	611.09	35.405	85	0.247	67.905	685.376	10.093	611.09	17.26	797.4	49	759.6612958	118.7462764	554.0768434	86.81004873	M2	0.9	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.263	85	0	0	NA	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr12	69190025	69190025	GT	G	ENSMUST00000021356.5	1	ENSMUSG00000020973	FS	T/X	770	Dnaaf2	ENSMUST00000021356.5:c.2308del	ENSMUSP00000021356.5:p.Thr770LeufsTer12	H-2-Db	9	5	7	SSLLNKLWF	SSLLNKTVV	NetMHC	102.74	8.12	0.079	222	0.18	148.467	27.724	0.187	8.12	102.74	17.2	273.1	38.24899249	138.2356312	40.41755147	158.6974688	M2	0.842857143	0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.182	222	70	11	0.157142857	12qC2	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.764826056	sgMsh2	cell line
chr12	64967163	64967163	G	T	ENSMUST00000066296.8	1	ENSMUSG00000035614	missense	S/I	396	Togaram1	ENSMUST00000066296.8:c.1187G>T	ENSMUSP00000070382.7:p.Ser396Ile	H-2-Kb	8	10	2	IILLYNLL	ISLLYNLL	NetMHC	6.79	3.61	0.532	250	0.224	15.257	7.303	0.479	3.61	6.79	5.8	15.9	8.805215715	14.61302072	9.478508415	16.50973111	M2	2.128571429	2.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	250	70	11	0.157142857	12qC1	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.9539314	sgMsh2	cell line
chr12	98275382	98275382	T	C	ENSMUST00000075072.5	1	ENSMUSG00000021886	missense	M/T	98	Gpr65	ENSMUST00000075072.5:c.293T>C	ENSMUSP00000074581.4:p.Met98Thr	H-2-Kb	8	6	6	VFFTYTNF	VFFTYMNF	SMMPMBEC	20.358	18.019	0.885	247	0.198	21.686	17.92	0.826	17.82	22.25	45.7	37.4	16.50973111	21.12224132	18.01938647	20.35822922	M2	0.314285714	0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.196	247	0	0	NA	12qE	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.82365883	sgMsh2	cell line
chr12	108361203	108361203	T	C	ENSMUST00000021684.5	1	ENSMUSG00000021259	missense	F/L	425	Cyp46a1	ENSMUST00000021684.5:c.1273T>C	ENSMUSP00000021684.4:p.Phe425Leu	H-2-Kb	8	11	1	LTYFPFSL	FTYFPFSL	NetMHCpan	22.8	31.8	1.395	127	0.189	102.142	85.132	0.833	67.05	60.82	31.8	22.8	103.2143305	143.4630303	134.1961326	157.666708	M2	0.714285714	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.194	127	0	0	NA	12qF1	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.815254148	sgMsh2	cell line
chr12	75716177	75716177	C	A	ENSMUST00000021450.5	1	ENSMUSG00000021054	missense	G/V	410	Sgpp1	ENSMUST00000021450.5:c.1229G>T	ENSMUSP00000021450.4:p.Gly410Val	H-2-Kb	8	8	4	ITYVMVGF	ITYGMVGF	NetMHCpan	71.7	131.8	1.838	181	0.21	126.749	402.15	3.173	373.04	92.9	131.8	71.7	585.787365	231.6007706	431.2608157	160.597951	M2	1.528571429	1.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.201	181	23	6	0.260869565	12qC3	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.844670535	sgMsh2	cell line
chr12	75462326	75462326	C	A	ENSMUST00000021447.8	1	ENSMUSG00000021051	missense	R/M	393	Ppp2r5e	ENSMUST00000021447.8:c.1178G>T	ENSMUSP00000021447.7:p.Arg393Met	H-2-Kb	8	4	8	IMFSSLYM	IMFSSLYR	NetMHCpan	45.2	3047	67.412	205	0.176	183.13	2716.691	14.835	3428.33	99.12	3047	45.2	1488.469706	267.1406633	2386.382195	295.6242117	M2	1.071428571	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.171	205	189	45	0.238095238	12qC3	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.718600306	sgMsh2	cell line
chr12	64967163	64967163	G	T	ENSMUST00000066296.8	1	ENSMUSG00000035614	missense	S/I	396	Togaram1	ENSMUST00000066296.8:c.1187G>T	ENSMUSP00000070382.7:p.Ser396Ile	H-2-Kb	8	9	3	FIILLYNL	FISLLYNL	SMM	95.662	517.297	5.408	250	0.224	120.913	842.07	6.964	1235.34	126.55	1031.4	453	517.2970479	95.66211974	652.7396586	115.2762924	M2	2.228571429	2.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	250	70	11	0.157142857	12qC1	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.9539314	sgMsh2	cell line
chr12	84162393	84162393	AG	A	ENSMUST00000110294.1	5	ENSMUSG00000042507	FS	P/X	645	Elmsan1	ENSMUST00000110294.1:c.1934del	ENSMUSP00000105923.1:p.Pro645LeufsTer58	H-2-Kb	8	57	0	IALKSPRL	NA	NetMHC	156.56	NA	NA	36	0.25	204.907	NA	NA	NA	156.56	NA	203.4	NA	206.414404	NA	241.9580078	M2	-0.2	-0.1	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.25	36	11	1	0.090909091	12qD1	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr12	46700672	46700672	GT	G	ENSMUST00000021438.7	1	ENSMUSG00000021047	FS	N/X	274	Nova1	ENSMUST00000021438.7:c.821del	ENSMUSP00000021438.6:p.Asn274ThrfsTer16	H-2-Kb	8	5	7	TGSPYATL	TGSPYANT	NetMHC	185.11	5481.15	29.61	108	0.204	207.225	3400.15	16.408	5481.15	185.11	4628.9	187.6	2171.400833	226.8506354	1650.973111	251.0383085	M2	0.114285714	0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.209	108	0	0	NA	12qB3	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.878289263	sgMsh2	cell line
chr12	84162393	84162393	AG	A	ENSMUST00000110294.1	5	ENSMUSG00000042507	FS	P/X	645	Elmsan1	ENSMUST00000110294.1:c.1934del	ENSMUSP00000105923.1:p.Pro645LeufsTer58	H-2-Kb	8	60	0	KSPRLSSL	NA	NetMHC	187.45	NA	NA	36	0.25	295.716	NA	NA	NA	187.45	NA	313.8	NA	279.7306149	NA	311.7022951	M2	-0.128571429	-0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.25	36	11	1	0.090909091	12qD1	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr12	69190025	69190025	GT	G	ENSMUST00000021356.5	1	ENSMUSG00000020973	FS	T/X	770	Dnaaf2	ENSMUST00000021356.5:c.2308del	ENSMUSP00000021356.5:p.Thr770LeufsTer12	H-2-Kb	8	14	0	KTYLTLTL	NA	NetMHCpan	98.5	NA	NA	222	0.18	204.29	NA	NA	NA	217.21	NA	98.5	NA	205.466016	NA	203.114066	M2	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.182	222	70	11	0.157142857	12qC2	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.764826056	sgMsh2	cell line
chr12	72556654	72556654	T	A	ENSMUST00000044352.7	1	ENSMUSG00000034501	missense	S/T	489	Pcnx4	ENSMUST00000044352.7:c.1465T>A	ENSMUSP00000038916.6:p.Ser489Thr	H-2-Kb	8	10	2	VTIGFTRA	VSIGFTRA	SMMPMBEC	216.641	129.64	0.598	221	0.149	273.909	146.801	0.536	79.74	275.71	178.1	397.8	163.9607892	272.1071791	129.6402918	216.6406749	M2	0.4	0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.151	221	52	9	0.173076923	12qC3	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.634553486	sgMsh2	cell line
chr12	11458657	11458657	C	CT	ENSMUST00000124065.1	2	ENSMUSG00000086022	FS	P/PX	860	Rad51ap2	ENSMUST00000124065.1:c.2585dup	ENSMUSP00000128854.1:p.Leu862PhefsTer4	H-2-Kb	8	8	6	RNAPFFVL	RNAPFLSC	NetMHCpan	115.7	4040.8	34.925	126	0.214	369.021	6122.447	16.591	17561.47	576.08	4040.8	115.7	4214.44121	272.7344509	8030.452175	465.3074435	M2	1.471428571	1.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.225	126	0	0	NA	12qA1.1	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.945526718	sgMsh2	cell line
chr12	54685943	54685943	TG	T	ENSMUST00000161592.7	1	ENSMUSG00000054302	FS	H/X	127	Eapp	ENSMUST00000161592.7:c.381del	ENSMUSP00000123698.1:p.His127GlnfsTer52	H-2-Kb	8	53	0	SLFQTVML	NA	SMMPMBEC	306.719	NA	NA	137	0.394	372.068	NA	NA	NA	617.01	NA	379.6	NA	364.5356443	NA	306.71852	M2	1.757142857	1.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.398	137	246	77	0.31300813	12qC1	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	2	1	sgMsh2	cell line
chr12	31708932	31708932	A	G	ENSMUST00000236002.1	NA	ENSMUSG00000044067	missense	I/T	397	Gpr22	ENSMUST00000236002.1:c.1190T>C	ENSMUSP00000158030.1:p.Ile397Thr	H-2-Kb	8	8	4	GTTTFHPL	GTTIFHPL	SMMPMBEC	181.443	200.789	1.107	304	0.211	344.511	294.142	0.854	1035.85	893.41	338.4	454.2	249.8848923	234.8226582	200.7890385	181.4429089	M2	-0.042857143	-0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.21	304	0	0	NA	12qA3	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.882491604	sgMsh2	cell line
chr12	98275382	98275382	T	C	ENSMUST00000075072.5	1	ENSMUSG00000021886	missense	M/T	98	Gpr65	ENSMUST00000075072.5:c.293T>C	ENSMUSP00000074581.4:p.Met98Thr	H-2-Kb	9	5	7	SVFFTYTNF	SVFFTYMNF	NetMHCpan	31	33.7	1.087	247	0.198	50.82	51.291	1.009	31.09	34.48	33.7	31	68.88267433	67.15989369	103.5738214	93.37916798	M2	0.314285714	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.196	247	0	0	NA	12qE	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.82365883	sgMsh2	cell line
chr12	31709410	31709410	T	C	ENSMUST00000236002.1	NA	ENSMUSG00000044067	missense	S/G	238	Gpr22	ENSMUST00000236002.1:c.712A>G	ENSMUSP00000158030.1:p.Ser238Gly	H-2-Kb	9	9	3	STGEYYTEL	STSEYYTEL	NetMHC	37.25	32.97	0.885	219	0.201	75.815	105.246	1.388	32.97	37.25	31.7	45.4	181.1798935	108.9205937	177.521108	106.2306894	M2	-0.985714286	-0.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.212	219	0	0	NA	12qA3	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.890896285	sgMsh2	cell line
chr11	120817145	120817145	A	T	ENSMUST00000055655.8	1	ENSMUSG00000025153	missense	L/M	694	Fasn	ENSMUST00000055655.8:c.2080T>A	ENSMUSP00000052872.7:p.Leu694Met	H-2-Kb	9	7	5	IAPTMLQAL	IAPTLLQAL	NetMHC	97.26	145.66	1.498	109	0.248	258.506	379.813	1.469	145.66	97.26	202.3	158	557.3268932	359.0128555	577.0985724	406.6773641	M2	0.785714286	0.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.262	109	412	117	0.283980583	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr12	75462326	75462326	C	A	ENSMUST00000021447.8	1	ENSMUSG00000021051	missense	R/M	393	Ppp2r5e	ENSMUST00000021447.8:c.1178G>T	ENSMUSP00000021447.7:p.Arg393Met	H-2-Kb	9	4	8	IMFSSLYMI	IMFSSLYRI	NetMHC	108.55	86.63	0.798	205	0.176	117.656	92.983	0.79	86.63	108.55	56.1	111.4	99.3367621	123.9110394	147.6556263	186.3159349	M2	1.442857143	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.171	205	189	45	0.238095238	12qC3	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.718600306	sgMsh2	cell line
chr12	64967163	64967163	G	T	ENSMUST00000066296.8	1	ENSMUSG00000035614	missense	S/I	396	Togaram1	ENSMUST00000066296.8:c.1187G>T	ENSMUSP00000070382.7:p.Ser396Ile	H-2-Kb	9	9	3	FIILLYNLL	FISLLYNLL	SMM	104.739	350.841	3.35	250	0.224	127.044	543.413	4.277	635.75	114.37	1055.4	694.2	350.8407252	104.7393803	451.0762902	139.7172407	M2	2.128571429	2.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	250	70	11	0.157142857	12qC1	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.9539314	sgMsh2	cell line
chr12	84106461	84106461	G	T	ENSMUST00000056822.3	1	ENSMUSG00000043487	missense	G/V	159	Acot6	ENSMUST00000056822.3:c.476G>T	ENSMUSP00000056131.3:p.Gly159Val	H-2-Kb	9	11	1	VIIDLYGSI	GIIDLYGSI	NetMHCpan	77.9	1628.7	20.908	151	0.139	151.163	1429.64	9.458	2254.44	116.01	1628.7	77.9	1230.580418	226.5217979	933.7916798	186.3159349	M2	0.971428571	1.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.122	151	0	0	NA	12qD1	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.512685598	sgMsh2	cell line
chr12	31547124	31547124	T	C	ENSMUST00000001253.7	1	ENSMUSG00000020651	missense	N/S	248	Slc26a4	ENSMUST00000001253.7:c.743A>G	ENSMUSP00000001253.7:p.Asn248Ser	H-2-Kb	9	5	7	VSTKNYSGI	VSTKNYNGI	NetMHC	120.76	277.9	2.301	152	0.151	269.151	316.632	1.176	277.9	120.76	586.2	300.6	296.558243	258.8868552	336.7053368	279.4151821	M2	-0.871428571	-0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.165	152	0	0	NA	12qA2	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.69338626	sgMsh2	cell line
chr12	69190025	69190025	GT	G	ENSMUST00000021356.5	1	ENSMUSG00000020973	FS	T/X	770	Dnaaf2	ENSMUST00000021356.5:c.2308del	ENSMUSP00000021356.5:p.Thr770LeufsTer12	H-2-Kb	9	11	1	LWFKTYLTL	NA	SMM	52.736	NA	NA	222	0.18	87.638	NA	NA	NA	123.24	NA	86.1	NA	52.73634174	NA	89.17641311	M2	0.542857143	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.182	222	70	11	0.157142857	12qC2	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.764826056	sgMsh2	cell line
chr12	72556654	72556654	T	A	ENSMUST00000044352.7	1	ENSMUSG00000034501	missense	S/T	489	Pcnx4	ENSMUST00000044352.7:c.1465T>A	ENSMUSP00000038916.6:p.Ser489Thr	H-2-Kb	9	10	2	VTIGFTRAF	VSIGFTRAF	NetMHC	135.99	77.66	0.571	221	0.149	241.68	150.693	0.624	77.66	135.99	132.3	200.8	169.0869148	282.5595563	216.3963843	351.7628732	M2	0.9	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.151	221	52	9	0.173076923	12qC3	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.634553486	sgMsh2	cell line
chr12	75716177	75716177	C	A	ENSMUST00000021450.5	1	ENSMUSG00000021054	missense	G/V	410	Sgpp1	ENSMUST00000021450.5:c.1229G>T	ENSMUSP00000021450.4:p.Gly410Val	H-2-Kb	9	11	1	VMVGFSITF	GMVGFSITF	SMM	93.349	507.119	5.433	181	0.21	171.911	1429.349	8.314	2096.18	191.68	3962.6	381.5	507.1191374	93.34907095	762.5178243	152.1423079	M2	1.771428571	2.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.201	181	23	6	0.260869565	12qC3	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.844670535	sgMsh2	cell line
chr12	55707969	55707969	A	G	ENSMUST00000085385.6	1	ENSMUSG00000021027	missense	L/S	1179	Ralgapa1	ENSMUST00000085385.6:c.3536T>C	ENSMUSP00000082503.5:p.Leu1179Ser	H-2-Kb	9	4	8	YNIMHCGSL	YNIMHCGLL	NetMHCpan	97.8	114.6	1.172	141	0.149	248.131	188.429	0.759	147.64	214.91	114.6	97.8	277.4022632	379.4110717	229.2186762	281.3519957	M2	1.185714286	1.185714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.156	141	54	8	0.148148148	12qC1	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.655565191	sgMsh2	cell line
chr12	111678648	111678648	A	G	ENSMUST00000084947.9	1	ENSMUSG00000060950	missense	Y/C	6	Trmt61a	ENSMUST00000084947.9:c.17A>G	ENSMUSP00000082011.3:p.Tyr6Cys	H-2-Kb	9	1	6	MSFVACEEL	MSFVAYEEL	NetMHCpan	242.1	23.8	0.098	93	0.14	359.464	57.617	0.16	18.72	290.27	23.8	242.1	91.43448014	428.6570788	121.6886295	527.5334467	M2	1.157142857	1.271428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.143	93	18	1	0.055555556	12qF1	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.600934759	sgMsh2	cell line
chr12	46700672	46700672	GT	G	ENSMUST00000021438.7	1	ENSMUSG00000021047	FS	N/X	274	Nova1	ENSMUST00000021438.7:c.821del	ENSMUSP00000021438.6:p.Asn274ThrfsTer16	H-2-Kb	9	10	2	ATLLKCYQL	NA	NetMHC	299.19	NA	NA	108	0.204	464.002	NA	NA	NA	299.19	NA	553.1	NA	521.3267383	NA	406.6773641	M2	0.742857143	0.857142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.209	108	0	0	NA	12qB3	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.878289263	sgMsh2	cell line
chr12	98275382	98275382	T	C	ENSMUST00000075072.5	1	ENSMUSG00000021886	missense	M/T	98	Gpr65	ENSMUST00000075072.5:c.293T>C	ENSMUSP00000074581.4:p.Met98Thr	H-2-Kb	9	11	1	TNFYSSTAF	MNFYSSTAF	SMM	318.5	323.676	1.016	247	0.198	365.539	317.878	0.87	312.08	327.2	253.8	411.6	323.6756285	318.5004131	476.7053215	403.8778168	M2	0.542857143	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.196	247	0	0	NA	12qE	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.82365883	sgMsh2	cell line
chr12	70163398	70163398	CG	C	ENSMUST00000169156.2	5	ENSMUSG00000090121	FS	R/X	116	Abhd12b	ENSMUST00000169156.2:c.350del	ENSMUSP00000134568.1:p.Gly117GlufsTer31	H-2-Kb	9	28	0	VMGTRLLSI	NA	SMMPMBEC	204.762	NA	NA	87	0.172	287.971	NA	NA	NA	340.92	NA	1031.1	NA	235.0228021	NA	204.7623004	M2	0.814285714	1.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.165	87	0	0	NA	12qC2	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.69338626	sgMsh2	cell line
chr12	51999859	51999859	T	G	ENSMUST00000021339.7	1	ENSMUSG00000020956	missense	N/H	66	Dtd2	ENSMUST00000021339.7:c.196A>C	ENSMUSP00000021339.7:p.Asn66His	H-2-Kb	9	6	6	VNTLLHVKL	VNTLLNVKL	NetMHCpan	212.6	1257.5	5.915	66	0.197	402.088	1117.492	2.779	1647.25	460.42	1257.5	212.6	977.4847712	462.4981501	708.3534281	343.7557727	M2	1.114285714	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.224	66	70	16	0.228571429	12qC1	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.941324377	sgMsh2	cell line
chr13	75878849	75878849	T	G	ENSMUST00000022078.11	1	ENSMUSG00000021589	missense	K/N	468	Rhobtb3	ENSMUST00000022078.11:c.1404A>C	ENSMUSP00000022078.5:p.Lys468Asn	H-2-Db	9	7	5	YGVSNETFL	YGVSKETFL	NetMHC	4.07	552.12	135.656	173	0.254	38.329	1708.94	44.587	552.12	4.07	1286.7	11.1	2131.179353	65.55714019	2236.505652	66.61468828	M2	0.328571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	173	126	55	0.436507937	13qC1	chr13-3556297-119495179	5	3	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr14	20467483	20467483	AG	A	ENSMUST00000100844.5	1	ENSMUSG00000021814	FS	P/X	156	Anxa7	ENSMUST00000100844.5:c.467del	ENSMUSP00000098405.5:p.Pro156LeufsTer13	H-2-Kb	8	4	8	SSYPAFPL	SSYPAFPP	NetMHC	7.01	1551.08	221.267	90	0.2	14.476	701.254	48.441	1551.08	7.01	707.9	10.3	451.5855118	18.65262676	694.6083504	26.77564861	M2	0.442857143	0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.215	90	4	0	0	14qA3	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	1	0.903503308	sgMsh2	cell line
chr14	45614188	45614188	T	C	ENSMUST00000087320.12	1	ENSMUSG00000037697	missense	Y/C	511	Ddhd1	ENSMUST00000087320.12:c.1532A>G	ENSMUSP00000084577.5:p.Tyr511Cys	H-2-Kb	8	8	4	IMYCTSPL	IMYYTSPL	NetMHC	11.28	6.72	0.596	122	0.131	26.327	19.907	0.756	6.72	11.28	8.5	16.2	35.54184757	37.30267702	31.31410475	36.45356443	M2	0.542857143	0.642857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.153	122	31	2	0.064516129	14qC1	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	1	0.642958168	sgMsh2	cell line
chr12	117974938	117974938	G	A	ENSMUST00000084806.6	1	ENSMUSG00000018581	missense	A/V	3265	Dnah11	ENSMUST00000084806.6:c.9794C>T	ENSMUSP00000081867.6:p.Ala3265Val	H-2-Kb	8	7	5	KSFAVAGL	KSFAAAGL	NetMHC	11.66	16.83	1.443	113	0.195	23.502	30.038	1.278	16.83	11.66	34.2	31.4	28.6906244	22.52890066	31.38629122	24.47597495	M2	1.885714286	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.204	113	0	0	NA	12qF2	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.857277558	sgMsh2	cell line
chr13	22852362	22852362	A	T	ENSMUST00000228645.1	NA	ENSMUSG00000063998	missense	L/H	45	Vmn1r211	ENSMUST00000228645.1:c.134T>A	ENSMUSP00000154146.1:p.Leu45His	H-2-Kb	8	7	5	IHLIHAHL	IHLILAHL	NetMHC	14.77	31.74	2.149	298	0.221	36.842	77.668	2.108	31.74	14.77	111.6	76.5	77.39982879	34.89313575	77.93633877	38.79180607	M2	0.614285714	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.234	298	0	0	NA	13qA3.1	chr13-3556297-119495179	5	3	2	0.99	4.160317559	NA	1	0.983347787	sgMsh2	cell line
chr14	29988224	29988224	G	T	ENSMUST00000224797.1	NA	ENSMUSG00000015971	missense	R/M	316	Actr8	ENSMUST00000224797.1:c.947G>T	ENSMUSP00000153076.1:p.Arg316Met	H-2-Kb	8	9	3	VSMCFYWL	VSRCFYWL	NetMHCpan	18	44.3	2.461	101	0.208	18.823	33.596	1.785	38.96	18.69	44.3	18	19.57672319	18.95570756	28.23189304	19.26371303	M2	1.142857143	1.2	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.225	101	70	12	0.171428571	14qB	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	1	0.945526718	sgMsh2	cell line
chr14	27493488	27493488	T	G	ENSMUST00000223689.1	NA	ENSMUSG00000046753	missense	D/A	365	Ccdc66	ENSMUST00000223689.1:c.1094A>C	ENSMUSP00000153023.1:p.Asp365Ala	H-2-Kb	8	6	6	WAVHFASL	WAVHFDSL	NetMHC	37.75	990.57	26.24	71	0.296	48.406	559.457	11.557	990.57	37.75	624.9	44	494.0148455	71.40687051	426.324214	52.8128981	M2	1.485714286	1.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.288	71	30	7	0.233333333	14qA3	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr13	22620498	22620498	G	T	ENSMUST00000227244.1	NA	ENSMUSG00000101578	missense	L/I	180	Vmn1r206	ENSMUST00000227244.1:c.538C>A	ENSMUSP00000154713.1:p.Leu180Ile	H-2-Kb	8	6	6	IKWIFIPL	IKWIFLPL	SMMPMBEC	16.586	19.487	1.175	365	0.047	34.064	42.378	1.244	62.33	48.82	89.2	112.7	22.42538976	19.30812048	19.48677632	16.58593656	M2	1.314285714	1.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.05	365	0	0	NA	13qA3.1	chr13-3556297-119495179	5	3	2	0.99	4.160317559	NA	1	0.210117048	sgMsh2	cell line
chr14	30565598	30565598	A	C	ENSMUST00000022529.7	1	ENSMUSG00000021957	missense	D/A	183	Tkt	ENSMUST00000022529.7:c.548A>C	ENSMUSP00000022529.6:p.Asp183Ala	H-2-Kb	8	8	4	AIFAINRL	AIFDINRL	NetMHCpan	63.2	123.2	1.949	81	0.148	133.004	297.159	2.234	429.52	121.55	123.2	63.2	314.5864409	164.7175978	279.7306149	144.4574685	M2	1.342857143	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.162	81	972	215	0.221193416	14qB	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	1	0.680779237	sgMsh2	cell line
chr13	54221267	54221267	TC	T	ENSMUST00000038101.3	1	ENSMUSG00000034987	FS	S/X	374	Hrh2	ENSMUST00000038101.3:c.1122del	ENSMUSP00000038170.3:p.Phe375SerfsTer53	H-2-Kb	8	26	0	SNHHYISV	NA	NetMHCpan	84.2	NA	NA	87	0.138	192.438	NA	NA	NA	148.97	NA	84.2	NA	235.9065504	NA	249.310173	M2	-0.471428571	-0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.158	87	0	0	NA	13qB1	chr13-3556297-119495179	5	3	2	0.99	4.160317559	NA	1	0.663969873	sgMsh2	cell line
chr13	114826231	114826231	G	A	ENSMUST00000166176.8	1	ENSMUSG00000015536	missense	V/M	151	Mocs2	ENSMUST00000166176.8:c.451G>A	ENSMUSP00000125797.1:p.Val151Met	H-2-Kb	8	11	1	MSYAIDSL	VSYAIDSL	NetMHCpan	89.5	33.3	0.372	131	0.267	139.899	50.909	0.364	37.44	157.15	33.3	89.5	64.37837347	137.3219621	67.25738845	142.4754378	M2	0.528571429	0.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.274	131	112	22	0.196428571	13qD2.2	chr13-3556297-119495179	5	3	2	0.99	4.160317559	NA	2	1	sgMsh2	cell line
chr13	22293541	22293541	T	C	ENSMUST00000228382.1	NA	ENSMUSG00000069295	missense	S/P	117	Vmn1r196	ENSMUST00000228382.1:c.349T>C	ENSMUSP00000154358.1:p.Ser117Pro	H-2-Kb	8	9	3	RAPWWGRL	RASWWGRL	NetMHCpan	195.9	896.8	4.578	255	0.294	341.715	1061.965	3.108	1423.61	271.58	896.8	195.9	1129.11974	421.444121	994.8096742	411.8508816	M2	-0.385714286	-0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.283	255	0	0	NA	13qA3.1	chr13-3556297-119495179	5	3	2	0.99	4.160317559	NA	2	1	sgMsh2	cell line
chr13	116910900	116910900	A	G	ENSMUST00000022239.7	5	ENSMUSG00000021725	missense	L/P	251	Parp8	ENSMUST00000022239.7:c.752T>C	ENSMUSP00000022239.6:p.Leu251Pro	H-2-Kb	8	8	4	IVRPHCSL	IVRLHCSL	SMM	192.637	101.097	0.525	157	0.197	278.151	113.701	0.409	111.86	291	203	380.5	101.0974031	192.6371303	115.5420317	265.3016799	M2	0.057142857	0.157142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.19	157	10	0	0	13qD2.3	chr13-3556297-119495179	5	3	2	0.99	4.160317559	NA	1	0.798444784	sgMsh2	cell line
chr14	23436016	23436016	TA	T	ENSMUST00000188285.6	1	ENSMUSG00000063142	FS	Y/X	680	Kcnma1	ENSMUST00000188285.6:c.2038del	ENSMUSP00000140275.1:p.Tyr680ThrfsTer31	H-2-Kb	8	8	4	AFFTARPV	NA	SMM	285.588	NA	NA	52	0.192	464.476	NA	NA	NA	585.6	NA	996.8	NA	285.5880296	NA	343.3523309	M2	0.685714286	0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.211	52	0	0	NA	14qA3	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	1	0.886693944	sgMsh2	cell line
chr14	20467483	20467483	AG	A	ENSMUST00000100844.5	1	ENSMUSG00000021814	FS	P/X	156	Anxa7	ENSMUST00000100844.5:c.467del	ENSMUSP00000098405.5:p.Pro156LeufsTer13	H-2-Kb	9	4	8	SSYPAFPLF	SSYPAFPPV	NetMHCpan	27.1	15.6	0.576	90	0.2	48.269	40.616	0.841	6.33	33.86	15.6	27.1	65.63114787	62.67725963	95.33447955	102.6242509	M2	0.957142857	0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.215	90	4	0	0	14qA3	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	1	0.903503308	sgMsh2	cell line
chr13	19367757	19367757	A	G	ENSMUST00000222869.1	5	ENSMUSG00000003062	missense	L/P	173	Stard3nl	ENSMUST00000222869.1:c.518T>C	ENSMUSP00000152373.1:p.Leu173Pro	H-2-Kb	9	5	7	VSFTPLPSL	VSFTPLLSL	NetMHCpan	23.6	28.3	1.199	68	0.191	57.235	69.752	1.219	50.15	40.15	28.3	23.6	89.35317727	74.32073569	109.2068801	93.81018664	M2	0.814285714	0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.193	68	175	50	0.285714286	13qA2	chr13-3556297-119495179	5	3	2	0.99	4.160317559	NA	1	0.811051807	sgMsh2	cell line
chr14	29988224	29988224	G	T	ENSMUST00000224797.1	NA	ENSMUSG00000015971	missense	R/M	316	Actr8	ENSMUST00000224797.1:c.947G>T	ENSMUSP00000153076.1:p.Arg316Met	H-2-Kb	9	9	3	VSMCFYWLM	VSRCFYWLM	SMM	22.086	32.742	1.483	101	0.208	24.996	45.085	1.804	100.09	57.04	51.6	26.1	32.74236157	22.08564057	38.57003207	23.89186213	M2	1.528571429	1.528571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.225	101	70	12	0.171428571	14qB	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	1	0.945526718	sgMsh2	cell line
chr14	27493488	27493488	T	G	ENSMUST00000223689.1	NA	ENSMUSG00000046753	missense	D/A	365	Ccdc66	ENSMUST00000223689.1:c.1094A>C	ENSMUSP00000153023.1:p.Asp365Ala	H-2-Kb	9	5	7	RWAVHFASL	RWAVHFDSL	NetMHC	58.78	407.87	6.939	71	0.296	95.532	415.391	4.348	407.87	58.78	651.4	95.1	251.8314697	95.96436635	422.9119919	162.2743955	M2	1.485714286	1.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.288	71	30	7	0.233333333	14qA3	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr13	67542395	67542395	TA	T	ENSMUST00000181892.8	1	ENSMUSG00000095432	FS	Y/X	249	Zfp748	ENSMUST00000181892.8:c.745del	ENSMUSP00000137928.1:p.Tyr249ThrfsTer47	H-2-Kb	9	44	0	VAMPFVHSI	NA	NetMHCpan	32.9	NA	NA	152	0.164	254.832	NA	NA	NA	98.41	NA	32.9	NA	411.2538721	NA	441.8247089	M2	1.114285714	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.171	152	45	6	0.133333333	13qB3	chr13-3556297-119495179	5	3	2	0.99	4.160317559	NA	1	0.718600306	sgMsh2	cell line
chr13	54221267	54221267	TC	T	ENSMUST00000038101.3	1	ENSMUSG00000034987	FS	S/X	374	Hrh2	ENSMUST00000038101.3:c.1122del	ENSMUSP00000038170.3:p.Phe375SerfsTer53	H-2-Kb	9	26	0	SNHHYISVL	NA	NetMHCpan	68.7	NA	NA	87	0.138	178.271	NA	NA	NA	141.14	NA	68.7	NA	229.67303	NA	215.4021332	M2	0.571428571	0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.158	87	0	0	NA	13qB1	chr13-3556297-119495179	5	3	2	0.99	4.160317559	NA	1	0.663969873	sgMsh2	cell line
chr13	75878849	75878849	T	G	ENSMUST00000022078.11	1	ENSMUSG00000021589	missense	K/N	468	Rhobtb3	ENSMUST00000022078.11:c.1404A>C	ENSMUSP00000022078.5:p.Lys468Asn	H-2-Kb	9	10	2	SNETFLSFL	SKETFLSFL	NetMHC	152.36	2784.6	18.276	173	0.254	305.223	2383.314	7.808	2784.6	152.36	3434.7	227.4	1982.028979	421.8033261	1691.414308	383.0451784	M2	1.171428571	1.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	173	126	55	0.436507937	13qC1	chr13-3556297-119495179	5	3	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr14	30565598	30565598	A	C	ENSMUST00000022529.7	1	ENSMUSG00000021957	missense	D/A	183	Tkt	ENSMUST00000022529.7:c.548A>C	ENSMUSP00000022529.6:p.Asp183Ala	H-2-Kb	9	7	5	VAIFAINRL	VAIFDINRL	NetMHCpan	105.3	537.5	5.104	81	0.148	203.936	485.56	2.381	877.91	173.39	537.5	105.3	433.6206938	234.4822647	361.6179668	276.8534884	M2	1.342857143	2.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.162	81	972	215	0.221193416	14qB	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	1	0.680779237	sgMsh2	cell line
chr12	116318844	116318844	A	C	ENSMUST00000100986.3	1	ENSMUSG00000021171	missense	E/A	138	Esyt2	ENSMUST00000100986.3:c.413A>C	ENSMUSP00000098548.2:p.Glu138Ala	H-2-Kb	9	5	7	FICQFIAKL	FICQFIEKL	NetMHC	274.03	1858.1	6.781	165	0.224	434.65	1868.7	4.299	1858.1	274.03	1879.3	413	1888.469608	820.5593529	1023.882217	456.2995075	M2	1.142857143	2.2	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.235	165	241	49	0.203319502	12qF2	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.987550128	sgMsh2	cell line
chr13	22806259	22806259	C	T	ENSMUST00000227265.1	NA	ENSMUSG00000071491	missense	G/E	87	Vmn1r209	ENSMUST00000227265.1:c.260G>A	ENSMUSP00000153997.1:p.Gly87Glu	H-2-Kb	9	5	7	KIIVYLERV	KIIVYLGRV	NetMHC	279.83	132.76	0.474	256	0.293	461.643	302.602	0.655	132.76	279.83	191.1	326.1	414.1045477	597.1865254	429.783759	640.1032025	M2	1.057142857	1.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.292	256	0	0	NA	13qA3.1	chr13-3556297-119495179	5	3	2	0.99	4.160317559	NA	2	1	sgMsh2	cell line
chr14	34594872	34594872	T	C	ENSMUST00000022331.2	1	ENSMUSG00000021799	missense	Y/C	320	Opn4	ENSMUST00000022331.2:c.959A>G	ENSMUSP00000022331.2:p.Tyr320Cys	H-2-Kb	9	6	6	VAFAGCSHI	VAFAGYSHI	NetMHCpan	125.5	15.8	0.126	56	0.196	316.575	52.299	0.165	26.39	294.11	15.8	125.5	87.5205423	410.3080144	78.20778752	339.0392667	M2	1.028571429	1.7	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.191	56	0	0	NA	14qB	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	1	0.802647125	sgMsh2	cell line
chr14	29170631	29170631	A	T	ENSMUST00000022567.8	1	ENSMUSG00000021991	missense	F/Y	418	Cacna2d3	ENSMUST00000022567.8:c.1253T>A	ENSMUSP00000022567.7:p.Phe418Tyr	H-2-Kb	9	6	6	ANKGFYTQI	ANKGFFTQI	NetMHCpan	153.5	133	0.866	93	0.215	222.545	313.745	1.41	417.88	298.99	133	153.5	384.6892055	273.5961615	242.8007366	171.4944225	M2	-0.357142857	-0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.223	93	0	0	NA	14qA3	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	1	0.937122036	sgMsh2	cell line
chr13	22620498	22620498	G	T	ENSMUST00000227244.1	NA	ENSMUSG00000101578	missense	L/I	180	Vmn1r206	ENSMUST00000227244.1:c.538C>A	ENSMUSP00000154713.1:p.Leu180Ile	H-2-Kb	9	6	6	IKWIFIPLM	IKWIFLPLM	SMMPMBEC	299.399	205.234	0.685	365	0.047	331.479	222.557	0.671	239.88	345.92	485	539	199.1177609	317.0370367	205.2343263	299.3987618	M2	2.142857143	2.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.05	365	0	0	NA	13qA3.1	chr13-3556297-119495179	5	3	2	0.99	4.160317559	NA	1	0.210117048	sgMsh2	cell line
chr13	21639372	21639372	A	T	ENSMUST00000205631.2	3	ENSMUSG00000036658	missense	H/Q	50	Olfr11	ENSMUST00000205631.2:c.150T>A	ENSMUSP00000146091.1:p.His50Gln	H-2-Kb	9	4	8	LNIILVSQL	LNIILVSHL	NetMHCpan	301.4	162.3	0.538	115	0.391	381.332	323.554	0.848	210.34	350.33	162.3	301.4	533.469998	644.3324442	436.7671833	412.3348098	M2	2.357142857	2.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.387	115	0	0	NA	13qA3.1	chr13-3556297-119495179	5	3	2	0.99	4.160317559	NA	2	1	sgMsh2	cell line
chr13	75878849	75878849	T	G	ENSMUST00000022078.11	1	ENSMUSG00000021589	missense	K/N	468	Rhobtb3	ENSMUST00000022078.11:c.1404A>C	ENSMUSP00000022078.5:p.Lys468Asn	H-2-Kb	9	9	3	VSNETFLSF	VSKETFLSF	SMM	343.645	425.706	1.239	173	0.254	405.045	443.114	1.094	688.38	363.15	407.4	540.2	425.7062242	343.6449768	460.5215948	446.9407979	M2	0.128571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	173	126	55	0.436507937	13qC1	chr13-3556297-119495179	5	3	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr13	21674653	21674653	C	T	ENSMUST00000216083.1	5	ENSMUSG00000108534	missense	C/Y	97	Olfr1360	ENSMUST00000216083.1:c.290G>A	ENSMUSP00000149423.1:p.Cys97Tyr	H-2-Kb	9	7	5	SYGGYVAQL	SYGGCVAQL	SMMPMBEC	358.303	1154.117	3.221	180	0.167	444.053	1769.897	3.986	1793.53	366.78	3760.5	626.7	1746.264398	521.3267383	1154.11743	358.3026333	M2	0.6	0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.174	180	0	0	NA	13qA3.1	chr13-3556297-119495179	5	3	2	0.99	4.160317559	NA	1	0.731207329	sgMsh2	cell line
chr14	45614188	45614188	T	C	ENSMUST00000087320.12	1	ENSMUSG00000037697	missense	Y/C	511	Ddhd1	ENSMUST00000087320.12:c.1532A>G	ENSMUSP00000084577.5:p.Tyr511Cys	H-2-Kb	9	8	4	IMYCTSPLY	IMYYTSPLY	SMM	100.487	72.629	0.723	122	0.131	436.085	328.486	0.753	479.86	649.71	1452	1280.4	72.6289892	100.4870276	177.1128208	222.4590099	M2	0.085714286	0.642857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.153	122	31	2	0.064516129	14qC1	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	1	0.642958168	sgMsh2	cell line
chr14	20467483	20467483	AG	A	ENSMUST00000100844.5	1	ENSMUSG00000021814	FS	P/X	156	Anxa7	ENSMUST00000100844.5:c.467del	ENSMUSP00000098405.5:p.Pro156LeufsTer13	H-2-Kb	10	4	8	SSYPAFPLFL	SSYPAFPPVS	NetMHCpan	24.8	345	13.911	90	0.2	482.067	1194.145	2.477	87.97	36.6	345	24.8	2043.289955	927.5343455	3522.572984	1054.047057	M2	1.685714286	1.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.215	90	4	0	0	14qA3	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	1	0.903503308	sgMsh2	cell line
chr14	54953903	54953903	T	C	ENSMUST00000081857.13	1	ENSMUSG00000040752	missense	K/R	827	Myh6	ENSMUST00000081857.13:c.2480A>G	ENSMUSP00000080538.6:p.Lys827Arg	H-2-Db	9	8	4	MGVRNWPWM	MGVKNWPWM	NetMHC	40.86	76.96	1.884	106	0.208	125.953	185.906	1.476	76.96	40.86	90.9	58.9	348.8349575	226.7879629	280.9118113	193.0056399	M2	-0.757142857	-0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.216	106	0	0	NA	14qC2	chr14-53336808-123291781	4	2	2	0.99	4.160317559	NA	1	0.907705649	sgMsh2	cell line
chr14	123295446	123295446	T	C	ENSMUST00000000201.6	5	ENSMUSG00000000197	missense	M/V	1301	Nalcn	ENSMUST00000000201.6:c.3901A>G	ENSMUSP00000000201.5:p.Met1301Val	H-2-Db	10	2	10	FALLNAYTYV	FALLNAYTYM	NetMHC	4.32	3.83	0.887	59	0.186	175.667	148.861	0.847	3.83	4.32	6.2	10.4	307.0789168	407.6148523	291.521104	340.9337536	M2	0.428571429	1.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.178	59	0	0	NA	14qE5	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	sgMsh2	cell line
chr14	65578034	65578034	T	C	ENSMUST00000022609.6	1	ENSMUSG00000022031	missense	M/V	189	Elp3	ENSMUST00000022609.6:c.565A>G	ENSMUSP00000022609.5:p.Met189Val	H-2-Kb	8	11	1	VGGTFMAL	MGGTFMAL	NetMHC	19.55	77.17	3.947	106	0.255	42.688	90.736	2.126	77.17	19.55	175.5	69.7	89.4828896	41.95077612	91.98986892	43.42501729	M2	1.257142857	1.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.258	106	154	32	0.207792208	14qD1	chr14-53336808-123291781	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr14	52036009	52036009	A	G	ENSMUST00000214071.1	5	ENSMUSG00000044286	missense	M/T	34	Olfr221	ENSMUST00000214071.1:c.101T>C	ENSMUSP00000150675.1:p.Met34Thr	H-2-Kb	8	10	2	VTYAITVL	VMYAITVL	NetMHCpan	26.2	23.8	0.908	67	0.149	60.149	92.464	1.537	54.39	47.73	23.8	26.2	137.3219621	75.63799359	130.5389154	72.56713881	M2	1.657142857	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.142	67	0	0	NA	14qC2	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	1	0.596732418	sgMsh2	cell line
chr14	65975611	65975611	T	G	ENSMUST00000022616.13	1	ENSMUSG00000022037	missense	F/V	149	Clu	ENSMUST00000022616.13:c.445T>G	ENSMUSP00000022616.6:p.Phe149Val	H-2-Kb	8	8	4	SSPVYFWM	SSPFYFWM	NetMHCpan	60.6	40.4	0.667	80	0.362	147.752	201.93	1.367	223.25	116.55	40.4	60.6	180.6092545	178.9534189	234.2825811	206.8902384	M2	0.614285714	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.375	80	12575	3805	0.302584493	14qD1	chr14-53336808-123291781	4	2	2	0.99	4.160317559	NA	2	1	sgMsh2	cell line
chr14	123515710	123515710	C	A	ENSMUST00000000201.6	5	ENSMUSG00000000197	missense	R/I	288	Nalcn	ENSMUST00000000201.6:c.863G>T	ENSMUSP00000000201.5:p.Arg288Ile	H-2-Kb	8	6	6	VFLMYIAI	VFLMYRAI	SMM	80.675	70.265	0.871	89	0.281	117.27	70.672	0.603	62.95	152.93	94.9	239.3	70.26515361	80.67519058	71.07878574	81.60936526	M2	2.571428571	2.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.295	89	0	0	NA	14qE5	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	sgMsh2	cell line
chr14	66004100	66004100	T	A	ENSMUST00000059970.8	1	ENSMUSG00000034450	missense	H/L	103	Gulo	ENSMUST00000059970.8:c.308A>T	ENSMUSP00000060912.7:p.His103Leu	H-2-Kb	8	11	1	LGLALSNL	HGLALSNL	NetMHC	204.75	1235.08	6.032	51	0.373	230.187	887.134	3.854	1235.08	204.75	1375.1	217.3	539.1877292	243.0748352	512.5544401	245.8895091	M2	1.214285714	1.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.372	51	4	0	0	14qD1	chr14-53336808-123291781	4	2	2	0.99	4.160317559	NA	2	1	sgMsh2	cell line
chr15	3325898	3325898	C	A	ENSMUST00000069451.10	1	ENSMUSG00000055737	missense	R/M	301	Ghr	ENSMUST00000069451.10:c.902G>T	ENSMUSP00000069457.4:p.Arg301Met	H-2-Kb	8	4	8	VIFSKQQM	VIFSKQQR	NetMHCpan	188.2	12750.8	67.751	121	0.157	363.498	6741.575	18.546	9458.39	228.41	12750.8	188.2	2790.872523	500.8872766	4024.76011	498.5859086	M2	-0.357142857	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.17	121	54	0	0	15qA1	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	1	0.714397965	sgMsh2	cell line
chr14	108912776	108912776	T	C	ENSMUST00000100322.3	NA	ENSMUSG00000075478	missense	T/A	168	Slitrk1	ENSMUST00000100322.3:c.502A>G	ENSMUSP00000097897.2:p.Thr168Ala	H-2-Kb	8	9	3	ISALPANV	ISTLPANV	SMM	194.868	217.641	1.117	55	0.109	278.341	278.464	1	284.82	287.07	1132.8	711.5	217.6406428	194.8677632	272.1071791	269.6124854	M2	0.814285714	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.127	55	0	0	NA	14qE3	chr14-53336808-123291781	4	2	2	0.99	4.160317559	NA	1	0.533697303	sgMsh2	cell line
chr15	55084094	55084094	A	G	ENSMUST00000023059.12	1	ENSMUSG00000022422	missense	V/A	230	Dscc1	ENSMUST00000023059.12:c.689T>C	ENSMUSP00000023059.6:p.Val230Ala	H-2-Kb	8	6	6	WSLDRAPL	WSLDRVPL	SMMPMBEC	220.668	636.414	2.884	85	0.365	309.984	790.887	2.551	1192.99	347.86	795.2	403.9	786.5747483	272.1071791	636.4144033	220.6683258	M2	-0.142857143	-0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.371	85	0	0	NA	15qD1	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	2	1	sgMsh2	cell line
chr14	54953903	54953903	T	C	ENSMUST00000081857.13	1	ENSMUSG00000040752	missense	K/R	827	Myh6	ENSMUST00000081857.13:c.2480A>G	ENSMUSP00000080538.6:p.Lys827Arg	H-2-Kb	8	11	1	RNWPWMKL	KNWPWMKL	NetMHCpan	209.4	183.6	0.877	106	0.208	346.662	316.038	0.912	298.85	357.64	183.6	209.4	357.8821189	356.2377999	333.2268594	337.0854446	M2	-0.728571429	-0.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.216	106	0	0	NA	14qC2	chr14-53336808-123291781	4	2	2	0.99	4.160317559	NA	1	0.907705649	sgMsh2	cell line
chr15	28367833	28367833	T	C	ENSMUST00000067048.7	5	ENSMUSG00000022262	missense	V/A	2788	Dnah5	ENSMUST00000067048.7:c.8363T>C	ENSMUSP00000069751.6:p.Val2788Ala	H-2-Kb	8	10	2	YAFNLRDL	YVFNLRDL	NetMHCpan	341.5	316.4	0.927	79	0.367	424.862	411.377	0.968	534.87	489.88	316.4	341.5	410.9036509	404.3337559	411.8508816	445.3895263	M2	0.1	0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.342	79	0	0	NA	15qB1	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	2	1	sgMsh2	cell line
chr15	59055080	59055080	A	G	ENSMUST00000080371.7	1	ENSMUSG00000022353	missense	V/A	49	Mtss1	ENSMUST00000080371.7:c.146T>C	ENSMUSP00000079239.6:p.Val49Ala	H-2-Kb	8	10	2	VAAAAAFL	VVAAAAFL	SMM	209.768	213.177	1.016	63	0.317	408.682	394.328	0.965	688.72	553.48	479.1	482.6	213.1768301	209.7683683	309.5565516	334.7649647	M2	2.228571429	2.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.34	63	73	24	0.328767123	15qD1	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	2	1	sgMsh2	cell line
chr14	54858102	54858102	A	G	ENSMUST00000081162.5	1	ENSMUSG00000057156	missense	F/L	50	Homez	ENSMUST00000081162.5:c.148T>C	ENSMUSP00000079929.5:p.Phe50Leu	H-2-Kb	9	11	1	LSYFPYPSL	FSYFPYPSL	NetMHCpan	8.8	10.2	1.159	71	0.282	22.2	23.683	1.067	14.85	12.77	10.2	8.8	32.51696473	31.63078717	42.68251484	37.17491635	M2	-1.27E-16	-3.17E-17	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.285	71	6	2	0.333333333	14qC2	chr14-53336808-123291781	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr15	16823315	16823315	CA	C	ENSMUST00000228307.1	NA	ENSMUSG00000025370	FS	K/X	128	Cdh9	ENSMUST00000228307.1:c.383del	ENSMUSP00000154022.1:p.Lys128ArgfsTer3	H-2-Kb	9	4	8	SLYILRARL	SLYILRAKA	NetMHC	34.72	2987.65	86.05	121	0.149	138.433	2844.375	20.547	2987.65	34.72	2701.1	48.7	4386.417848	267.9847002	2662.257137	228.165512	M2	0.514285714	1.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.154	121	0	0	NA	15qA2	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	1	0.647160509	sgMsh2	cell line
chr14	52372591	52372591	G	A	ENSMUST00000214980.1	5	ENSMUSG00000094140	missense	S/L	154	Olfr1512	ENSMUST00000214980.1:c.461C>T	ENSMUSP00000149717.1:p.Ser154Leu	H-2-Kb	9	3	9	VAGAWVAGL	VAGAWVAGS	NetMHC	82.47	7842.16	95.091	179	0.246	247.758	4683.545	18.904	7842.16	82.47	10553.1	219.3	1130.082111	299.9922256	1524.930322	276.216743	M2	1.414285714	1.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.253	179	0	0	NA	14qC2	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr14	101913334	101913334	C	A	ENSMUST00000100337.9	1	ENSMUSG00000033060	missense	S/R	1153	Lmo7	ENSMUST00000100337.9:c.3459C>A	ENSMUSP00000097910.3:p.Ser1153Arg	H-2-Kb	9	4	8	VTTDFSERL	VTTDFSESL	NetMHC	125.01	218.87	1.751	112	0.161	256.775	367.96	1.433	218.87	125.01	333.1	226.4	402.8190492	287.1507798	502.6318444	350.9538411	M2	-0.914285714	-0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.162	112	342	74	0.216374269	14qE2.3	chr14-53336808-123291781	4	2	2	0.99	4.160317559	NA	1	0.680779237	sgMsh2	cell line
chr15	3325898	3325898	C	A	ENSMUST00000069451.10	1	ENSMUSG00000055737	missense	R/M	301	Ghr	ENSMUST00000069451.10:c.902G>T	ENSMUSP00000069457.4:p.Arg301Met	H-2-Kb	9	4	8	VIFSKQQMI	VIFSKQQRI	NetMHC	128.02	112.77	0.881	121	0.157	167.824	129.667	0.773	112.77	128.02	141	229.5	118.334124	147.6080354	149.021867	188.039895	M2	-0.357142857	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.17	121	54	0	0	15qA1	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	1	0.714397965	sgMsh2	cell line
chr14	57480701	57480701	T	C	ENSMUST00000122063.7	1	ENSMUSG00000040040	missense	M/T	577	Ift88	ENSMUST00000122063.7:c.1730T>C	ENSMUSP00000113768.1:p.Met577Thr	H-2-Kb	9	5	7	QAIEWLTQL	QAIEWLMQL	NetMHC	144.21	130.29	0.903	127	0.252	232.952	219.487	0.942	130.29	144.21	188.3	221.5	250.6744092	244.4049514	289.2344371	260.7654204	M2	0.5	0.5	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.267	127	8	5	0.625	14qC3	chr14-53336808-123291781	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr14	65578034	65578034	T	C	ENSMUST00000022609.6	1	ENSMUSG00000022031	missense	M/V	189	Elp3	ENSMUST00000022609.6:c.565A>G	ENSMUSP00000022609.5:p.Met189Val	H-2-Kb	9	10	2	VVGGTFMAL	VMGGTFMAL	NetMHC	149.24	101.21	0.678	106	0.255	280.842	134.508	0.479	101.21	149.24	279.8	339.4	110.4358301	239.3922023	158.5805793	322.2923521	M2	1.257142857	1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.258	106	154	32	0.207792208	14qD1	chr14-53336808-123291781	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr14	56500485	56500485	T	G	ENSMUST00000095793.2	1	ENSMUSG00000000365	missense	L/R	1241	Rnf17	ENSMUST00000095793.2:c.3722T>G	ENSMUSP00000093469.1:p.Leu1241Arg	H-2-Kb	9	4	8	SNLKCLGRL	SNLKCLGLL	NetMHC	158.2	186.4	1.178	68	0.118	226.77	291.188	1.284	186.4	158.2	258.7	162.3	323.6756285	315.5803838	339.8208329	291.2393144	M2	0.728571429	0.728571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.133	68	0	0	NA	14qC3	chr14-53336808-123291781	4	2	2	0.99	4.160317559	NA	1	0.558911349	sgMsh2	cell line
chr15	35300596	35300596	AG	A	ENSMUST00000022952.5	1	ENSMUSG00000022330	FS	Q/X	99	Osr2	ENSMUST00000022952.5:c.301del	ENSMUSP00000022952.4:p.Ala101ProfsTer36	H-2-Kb	9	16	0	TSFQPYTRT	NA	NetMHC	193.49	NA	NA	59	0.271	272.399	NA	NA	NA	193.49	NA	415.4	NA	295.1956816	NA	249.6031145	M2	-1.357142857	-0.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.286	59	0	0	NA	15qB3.1	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	2	1	sgMsh2	cell line
chr14	56761852	56761852	A	C	ENSMUST00000022507.12	1	ENSMUSG00000021938	missense	L/V	316	Pspc1	ENSMUST00000022507.12:c.946T>G	ENSMUSP00000022507.5:p.Leu316Val	H-2-Kb	9	11	1	VMLMRQDLM	LMLMRQDLM	SMM	117.249	337.373	2.877	115	0.243	170.678	505.031	2.959	672.69	215.68	1505.6	463.1	337.3727491	117.2492302	325.2744865	125.6753201	M2	-0.014285714	0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.258	115	33	0	0	14qC3	chr14-53336808-123291781	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr15	28367833	28367833	T	C	ENSMUST00000067048.7	5	ENSMUSG00000022262	missense	V/A	2788	Dnah5	ENSMUST00000067048.7:c.8363T>C	ENSMUSP00000069751.6:p.Val2788Ala	H-2-Kb	9	6	6	AKFHYAFNL	AKFHYVFNL	NetMHCpan	95.2	97	1.019	79	0.367	348.957	301.449	0.864	210.93	218.06	97	95.2	445.7691405	479.854973	391.9674468	506.1159219	M2	0.457142857	0.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.342	79	0	0	NA	15qB1	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	2	1	sgMsh2	cell line
chr14	123515710	123515710	C	A	ENSMUST00000000201.6	5	ENSMUSG00000000197	missense	R/I	288	Nalcn	ENSMUST00000000201.6:c.863G>T	ENSMUSP00000000201.5:p.Arg288Ile	H-2-Kb	9	5	7	WVFLMYIAI	WVFLMYRAI	SMM	126.506	178.694	1.413	89	0.281	190.437	187.572	0.985	117.77	251.38	308	1796.8	178.6940122	126.5056726	196.4490803	129.4941055	M2	2.571428571	2.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.295	89	0	0	NA	14qE5	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	sgMsh2	cell line
chr15	63824978	63824978	T	C	ENSMUST00000188691.1	1	ENSMUSG00000056293	missense	K/R	448	Gsdmc2	ENSMUST00000188691.1:c.1343A>G	ENSMUSP00000140487.1:p.Lys448Arg	H-2-Kb	9	4	8	STWDLEARM	STWDLEAKM	NetMHC	270.97	630.27	2.326	385	0.327	393.946	686.739	1.743	630.27	270.97	949.5	462.3	743.2073569	407.4834739	574.4470454	380.4083139	M2	-0.7	-0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.333	385	0	0	NA	15qD1	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	2	1	sgMsh2	cell line
chr14	69793939	69793939	T	C	ENSMUST00000022665.3	1	ENSMUSG00000022075	missense	N/S	579	Rhobtb2	ENSMUST00000022665.3:c.1736A>G	ENSMUSP00000022665.2:p.Asn579Ser	H-2-Kb	9	10	2	ASRLCLPHL	ANRLCLPHL	NetMHC	312.13	484.34	1.552	51	0.137	395.178	436.724	1.105	484.34	312.13	410.8	430.6	398.2080176	374.2053566	462.6472659	416.1500968	M2	0.657142857	0.714285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.157	51	41	9	0.219512195	14qD2	chr14-53336808-123291781	4	2	2	0.99	4.160317559	NA	1	0.659767532	sgMsh2	cell line
chr14	50453867	50453867	G	T	ENSMUST00000214792.1	5	ENSMUSG00000095917	missense	A/S	272	Olfr740	ENSMUST00000214792.1:c.814G>T	ENSMUSP00000148916.1:p.Ala272Ser	H-2-Kb	9	11	1	SGMQKLVTL	AGMQKLVTL	NetMHCpan	247.6	429.1	1.733	195	0.179	423.556	718.749	1.697	707.62	313.47	429.1	247.6	968.523137	625.3310593	729.8775406	533.6419961	M2	0.8	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.185	195	0	0	NA	14qC1	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	1	0.777433079	sgMsh2	cell line
chr14	52036009	52036009	A	G	ENSMUST00000214071.1	5	ENSMUSG00000044286	missense	M/T	34	Olfr221	ENSMUST00000214071.1:c.101T>C	ENSMUSP00000150675.1:p.Met34Thr	H-2-Kb	9	6	6	VVFLVTYAI	VVFLVMYAI	NetMHC	404.46	257.9	0.638	67	0.149	474.826	410.59	0.865	257.9	404.46	656.7	462	397.2921646	487.6519891	423.8869047	600.1364431	M2	2.157142857	2.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.142	67	0	0	NA	14qC2	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	1	0.596732418	sgMsh2	cell line
chr16	16673096	16673096	T	C	ENSMUST00000206365.2	3	ENSMUSG00000048101	missense	K/R	295	Olfr19	ENSMUST00000206365.2:c.884A>G	ENSMUSP00000145655.2:p.Lys295Arg	H-2-Db	9	6	6	YSLRNRDLM	YSLRNKDLM	NetMHC	3.3	4.46	1.352	121	0.264	5.853	8.806	1.505	4.46	3.3	5.9	4.6	11.71170164	7.105914866	14.27479894	9.496640546	M2	-0.928571429	-0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.284	121	0	0	NA	16qA3	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr15	75597834	75597834	A	G	ENSMUST00000023243.10	1	ENSMUSG00000022579	missense	T/A	133	Gpihbp1	ENSMUST00000023243.10:c.397A>G	ENSMUSP00000023243.4:p.Thr133Ala	H-2-Db	9	10	2	SALCNIPPW	STLCNIPPW	SMMPMBEC	43.709	249.787	5.715	88	0.227	85.973	425.163	4.945	1274.99	88.65	308.8	114.3	541.5268566	83.29520473	249.7870966	43.70891238	M2	0.457142857	0.957142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.241	88	0	0	NA	15qD3	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr16	3592590	3592590	A	G	ENSMUST00000216259.1	5	ENSMUSG00000051003	missense	S/G	65	Olfr161	ENSMUST00000216259.1:c.193A>G	ENSMUSP00000150825.1:p.Ser65Gly	H-2-Db	9	8	4	FFLGNLSFV	FFLSNLSFV	SMM	191.699	80.282	0.419	159	0.264	456.264	114.023	0.25	99.94	647.94	502	1445.2	80.28233585	191.6990674	128.1061561	264.5879126	M2	1.414285714	1.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.273	159	0	0	NA	16qA1	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	sgMsh2	cell line
chr16	3592590	3592590	A	G	ENSMUST00000216259.1	5	ENSMUSG00000051003	missense	S/G	65	Olfr161	ENSMUST00000216259.1:c.193A>G	ENSMUSP00000150825.1:p.Ser65Gly	H-2-Kb	8	6	6	MYFFLGNL	MYFFLSNL	NetMHCpan	34	14.7	0.432	159	0.264	89.071	59.088	0.663	49.51	88.66	14.7	34	68.66572344	89.4828896	80.11982647	98.3422182	M2	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.273	159	0	0	NA	16qA1	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	sgMsh2	cell line
chr15	100190056	100190056	T	C	ENSMUST00000100203.9	1	ENSMUSG00000023026	missense	V/A	957	Dip2b	ENSMUST00000100203.9:c.2870T>C	ENSMUSP00000097777.3:p.Val957Ala	H-2-Kb	8	7	5	ASVMAGNL	ASVMVGNL	NetMHC	249.4	155.85	0.625	152	0.224	304.177	234.725	0.772	155.85	249.4	254.3	361	261.0597994	332.4604589	215.149331	275.892567	M2	1	1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.239	152	30	7	0.233333333	15qF1	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr15	76185668	76185668	G	A	ENSMUST00000073418.12	5	ENSMUSG00000022565	missense	R/W	1153	Plec	ENSMUST00000073418.12:c.3457C>T	ENSMUSP00000073124.6:p.Arg1153Trp	H-2-Kb	8	7	5	VHRLWLPL	VHRLRLPL	SMM	145.794	747.722	5.129	37	0.297	184.366	805.542	4.369	756.53	292.75	951.2	214.3	747.7217263	145.794117	854.5549615	154.4329616	M2	0.171428571	0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe	3	0.305	37	187	42	0.22459893	15qD3	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	2	1	sgMsh2	cell line
chr16	3592523	3592523	GA	G	ENSMUST00000216259.1	5	ENSMUSG00000051003	FS	G/X	42	Olfr161	ENSMUST00000216259.1:c.128del	ENSMUSP00000150825.1:p.Asn43ThrfsTer46	H-2-Kb	8	47	0	LSLRYWPF	NA	NetMHCpan	130.4	NA	NA	117	0.256	210.41	NA	NA	NA	465.62	NA	130.4	NA	248.7367755	NA	172.0838049	M2	-0.357142857	-0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.268	117	0	0	NA	16qA1	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	sgMsh2	cell line
chr16	32961669	32961669	A	G	ENSMUST00000135193.8	5	ENSMUSG00000022801	missense	Y/C	271	Lrch3	ENSMUST00000135193.8:c.812A>G	ENSMUSP00000130708.1:p.Tyr271Cys	H-2-Kb	8	5	7	KIHIFKCL	KIHIFKYL	SMMPMBEC	256.886	92.628	0.361	181	0.232	319.381	76.184	0.239	59.74	598.73	59.4	324.9	102.9769442	313.8629122	92.62751223	256.8857419	M2	1.571428571	1.571428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.229	181	60	19	0.316666667	16qB3	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	0.962336082	sgMsh2	cell line
chr16	3592590	3592590	A	G	ENSMUST00000216259.1	5	ENSMUSG00000051003	missense	S/G	65	Olfr161	ENSMUST00000216259.1:c.193A>G	ENSMUSP00000150825.1:p.Ser65Gly	H-2-Kb	9	5	7	PMYFFLGNL	PMYFFLSNL	SMM	22.862	15.35	0.671	159	0.264	43.133	26.875	0.623	34.5	54.11	28.5	71.6	15.35005727	22.86177783	25.24933823	32.15511003	M2	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.273	159	0	0	NA	16qA1	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	sgMsh2	cell line
chr15	98126427	98126427	G	T	ENSMUST00000051226.7	1	ENSMUSG00000033065	missense	G/C	439	Pfkm	ENSMUST00000051226.7:c.1315G>T	ENSMUSP00000059801.6:p.Gly439Cys	H-2-Kb	9	7	5	VVHDCFEGL	VVHDGFEGL	NetMHC	110.43	431.59	3.908	106	0.151	228.926	428.227	1.871	431.59	110.43	423.6	235.2	439.6529586	227.0439846	424.864065	230.8075441	M2	-0.214285714	0.5	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.163	106	178	31	0.174157303	15qF1	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	1	0.684981578	sgMsh2	cell line
chr16	20686853	20686853	A	G	ENSMUST00000115460.7	5	ENSMUSG00000045983	missense	I/V	1292	Eif4g1	ENSMUST00000115460.7:c.3874A>G	ENSMUSP00000111120.1:p.Ile1292Val	H-2-Kb	9	11	1	VAREHMGRL	IAREHMGRL	SMMPMBEC	106.967	141.661	1.324	74	0.257	116.472	149.63	1.285	127.43	113.79	157.6	170.6	175.4324789	119.1543769	141.6609011	106.9670454	M2	-1.485714286	-0.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.271	74	399	79	0.197994987	16qB1	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr15	101024337	101024337	G	T	ENSMUST00000082209.12	5	ENSMUSG00000023033	missense	R/I	1297	Scn8a	ENSMUST00000082209.12:c.3890G>T	ENSMUSP00000080842.6:p.Arg1297Ile	H-2-Kb	9	11	1	IALRPLRAL	RALRPLRAL	NetMHC	144.11	670.22	4.651	169	0.178	440.193	1738.185	3.949	670.22	144.11	1498.9	283.2	1977.470439	597.1865254	2932.580889	805.8421878	M2	0.371428571	0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.17	169	0	0	NA	15qF1	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	1	0.714397965	sgMsh2	cell line
chr15	76353432	76353432	A	G	ENSMUST00000161527.7	5	ENSMUSG00000022553	missense	I/V	198	Maf1	ENSMUST00000161527.7:c.592A>G	ENSMUSP00000125387.1:p.Ile198Val	H-2-Kb	9	11	1	VVFFSCRSI	IVFFSCRSI	NetMHCpan	133.6	140.9	1.055	139	0.18	346.397	441.413	1.274	268.71	229.08	140.9	133.6	698.4092778	474.3621186	614.1154167	463.713778	M2	0.928571429	1.6	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.182	139	308	61	0.198051948	15qD3	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	1	0.764826056	sgMsh2	cell line
chr15	76622252	76622252	GT	G	ENSMUST00000078803.4	1	ENSMUSG00000115987	FS	N/X	216	Vps28	ENSMUST00000078803.4:c.647del	ENSMUSP00000077856.3:p.Asn216ThrfsTer?	H-2-Kb	9	5	7	SAYNAFTAS	SAYNAFNRF	SMM	204.226	61.96	0.303	138	0.188	329.815	52.55	0.159	43.14	281.84	34.5	452.4	61.95979897	204.225515	87.54876014	377.7896015	M2	0.014285714	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.189	138	143	4	0.027972028	15qD3	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	1	0.794242443	sgMsh2	cell line
chr15	76185668	76185668	G	A	ENSMUST00000073418.12	5	ENSMUSG00000022565	missense	R/W	1153	Plec	ENSMUST00000073418.12:c.3457C>T	ENSMUSP00000073124.6:p.Arg1153Trp	H-2-Kb	9	6	6	TVHRLWLPL	TVHRLRLPL	NetMHCpan	140.4	473.4	3.372	37	0.297	302.662	666.334	2.202	585.79	318.08	473.4	140.4	790.8789199	332.7438214	746.8785726	287.2433612	M2	0.171428571	0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe	3	0.305	37	187	42	0.22459893	15qD3	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	2	1	sgMsh2	cell line
chr16	17895029	17895029	G	A	ENSMUST00000046937.3	NA	ENSMUSG00000041566	missense	R/H	226	Tssk1	ENSMUST00000046937.3:c.677G>A	ENSMUSP00000040302.2:p.Arg226His	H-2-Kb	9	4	8	SNIKKMLHI	SNIKKMLRI	NetMHCpan	292.2	317	1.085	95	0.232	396.852	365.143	0.92	296.56	329.99	317	292.2	503.6281538	543.3879457	413.2853397	463.713778	M2	0.528571429	0.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.242	95	2	0	0	16qA3	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr16	3592523	3592523	GA	G	ENSMUST00000216259.1	5	ENSMUSG00000051003	FS	G/X	42	Olfr161	ENSMUST00000216259.1:c.128del	ENSMUSP00000150825.1:p.Asn43ThrfsTer46	H-2-Kb	9	39	0	WMYASPPPL	NA	NetMHCpan	187.9	NA	NA	117	0.256	209.738	NA	NA	NA	330.1	NA	187.9	NA	192.357888	NA	227.1171867	M2	-0.185714286	-0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.268	117	0	0	NA	16qA1	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	sgMsh2	cell line
chr16	43898221	43898221	C	A	ENSMUST00000132859.7	5	ENSMUSG00000022701	missense	S/Y	4	Ccdc191	ENSMUST00000132859.7:c.11C>A	ENSMUSP00000116078.1:p.Ser4Tyr	H-2-Kb	9	2	3	MTYMKKELV	MTSMKKELV	NetMHC	416.43	10480.62	25.168	209	0.297	433.746	8552.231	19.717	10480.62	416.43	14641.3	616.9	6623.84254	440.6664633	5600.799166	426.8251484	M2	-0.385714286	-0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.305	209	18	3	0.166666667	16qB4	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr16	15663059	15663059	T	G	ENSMUST00000023352.8	1	ENSMUSG00000022672	missense	I/S	348	Prkdc	ENSMUST00000023352.8:c.1043T>G	ENSMUSP00000023352.7:p.Ile348Ser	H-2-Kb	9	4	8	FMEQFYGSI	FMEQFYGII	SMMPMBEC	263.785	331.322	1.256	200	0.195	460.381	972.988	2.113	1523.2	551.69	1750.1	730.3	422.7756832	369.0710667	331.3217908	263.7849417	M2	-0.314285714	-0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.179	200	41	8	0.195121951	16qA2	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	0.752219033	sgMsh2	cell line
chr17	34594907	34594907	A	AG	ENSMUST00000038149.12	1	ENSMUSG00000034673	FS	Q/QX	326	Pbx2	ENSMUST00000038149.12:c.983dup	ENSMUSP00000040464.6:p.His329ProfsTer59	H-2-Db	9	17	0	HQLSNAPFL	NA	NetMHC	22	NA	NA	36	0.167	73.203	NA	NA	NA	22	NA	52.3	NA	94.10658202	NA	105.092083	M2	0.9	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1667	36	150	0	0	17qB1	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.70053024	sgMsh2	cell line
chr17	22603195	22603195	T	C	ENSMUST00000097381.4	1	ENSMUSG00000094921	missense	F/L	285	Vmn2r112	ENSMUST00000097381.4:c.853T>C	ENSMUSP00000094994.3:p.Phe285Leu	H-2-Db	9	9	3	VSLRMWESL	VSFRMWESL	SMMPMBEC	244.101	427.14	1.75	448	0.15	315.663	501.701	1.589	886.79	425.8	401.7	344.5	576.2620236	286.8269798	427.1397607	244.1012481	M2	-0.028571429	0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.147	448	0	0	NA	17qA3.3	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.617744122	sgMsh2	cell line
chr17	6029821	6029821	A	AC	ENSMUST00000115791.9	1	ENSMUSG00000023805	FS	-/X	1108-1109	Synj2	ENSMUST00000115791.9:c.3332dup	ENSMUSP00000111457.2:p.Pro1112SerfsTer43	H-2-Db	9	15	1	SNWLNGEEV	NA	NetMHCpan	321.2	NA	NA	60	0.217	474.024	NA	NA	NA	571.41	NA	321.2	NA	526.7687464	NA	421.2791835	M2	-0.542857143	-0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2167	60	40	0	0	17qA1	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.910647288	sgMsh2	cell line
chr16	59543197	59543197	AT	A	ENSMUST00000172910.2	5	ENSMUSG00000022723	FS	K/X	2441	Crybg3	ENSMUST00000172910.2:c.7323del	ENSMUSP00000156047.1:p.Lys2441AsnfsTer11	H-2-Db	9	7	5	AAEMNHCIL	NA	NetMHCpan	226	NA	NA	71	0.296	388.867	NA	NA	NA	644.6	NA	226	NA	423.2724481	NA	354.4622582	M2	0.357142857	0.357142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.297	71	3	0	0	16qC1.3	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr17	6029821	6029821	A	AC	ENSMUST00000115791.9	1	ENSMUSG00000023805	FS	-/X	1108-1109	Synj2	ENSMUST00000115791.9:c.3332dup	ENSMUSP00000111457.2:p.Pro1112SerfsTer43	H-2-Kb	8	23	0	VSLRRVHL	NA	NetMHC	15.89	NA	NA	60	0.217	54.106	NA	NA	NA	15.89	NA	40.8	NA	78.29607656	NA	67.41243274	M2	-0.171428571	-0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2167	60	40	0	0	17qA1	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.910647288	sgMsh2	cell line
chr17	37701005	37701005	AT	A	ENSMUST00000213732.1	5	ENSMUSG00000059964	FS	F/X	112	Olfr119	ENSMUST00000213732.1:c.339del	ENSMUSP00000150099.1:p.Phe113LeufsTer3	H-2-Kb	8	5	8	QMFFFTFL	QMFFFTFF	NetMHCpan	9.9	98.7	9.97	414	0.217	18.421	250.269	13.586	184.5	17.4	98.7	9.9	316.0385059	19.44195797	349.7357273	27.84453695	M2	2.314285714	2.314285714	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.224	414	0	0	NA	17qB1	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.941324377	sgMsh2	cell line
chr16	96683801	96683801	A	G	ENSMUST00000056102.8	1	ENSMUSG00000050272	missense	W/R	1109	Dscam	ENSMUST00000056102.8:c.3325T>C	ENSMUSP00000056040.7:p.Trp1109Arg	H-2-Kb	8	7	5	ISISRSTL	ISISWSTL	NetMHCpan	93.1	15.1	0.162	104	0.26	126.645	21.995	0.174	12.18	93.43	15.1	93.1	35.87071224	183.9670312	28.88949831	159.8600704	M2	0.1	0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.278	104	0	0	NA	16qC4	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr16	90767027	90767027	CA	C	ENSMUST00000140920.1	5	ENSMUSG00000039929	FS	L/X	1616	Urb1	ENSMUST00000140920.1:c.4847del	ENSMUSP00000114717.1:p.Leu1616ArgfsTer37	H-2-Kb	8	35	0	MTPAFFSI	NA	NetMHCpan	58.1	NA	NA	47	0.128	155.093	NA	NA	NA	108.47	NA	58.1	NA	201.7158386	NA	223.738128	M2	1.257142857	1.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.13	47	6	0	0	16qC3.3	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	0.546304326	sgMsh2	cell line
chr17	20735632	20735632	A	T	ENSMUST00000232943.1	NA	ENSMUSG00000067951	missense	N/Y	148	Vmn1r227	ENSMUST00000232943.1:c.442A>T	ENSMUSP00000156554.1:p.Asn148Tyr	H-2-Kb	8	9	3	LVYMLFPV	LVNMLFPV	NetMHCpan	111.4	2927.3	26.277	177	0.288	130.081	2754.007	21.171	5298.29	130.82	2927.3	111.4	2580.714726	181.861178	1827.006111	129.3421274	M2	2	2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.299	177	0	0	NA	17qA3.2	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr16	58926453	58926453	T	C	ENSMUST00000205986.3	2	ENSMUSG00000090951	missense	I/M	39	Olfr181	ENSMUST00000205986.3:c.117A>G	ENSMUSP00000145877.2:p.Ile39Met	H-2-Kb	8	5	7	AIYLVTMV	AIYLVTIV	NetMHC	143.87	786.44	5.466	243	0.21	259.507	804.095	3.099	786.44	143.87	1131.3	680.2	620.4974485	238.6382195	821.7505435	280.3754606	M2	2.371428571	2.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.215	243	0	0	NA	16qC1.3	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	0.903503308	sgMsh2	cell line
chr17	34594907	34594907	A	AG	ENSMUST00000038149.12	1	ENSMUSG00000034673	FS	Q/QX	326	Pbx2	ENSMUST00000038149.12:c.983dup	ENSMUSP00000040464.6:p.His329ProfsTer59	H-2-Kb	8	28	0	LWRLFQSL	NA	NetMHC	144.55	NA	NA	36	0.167	314.225	NA	NA	NA	144.55	NA	381.3	NA	313.8629122	NA	314.5864409	M2	0.1	0.1	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1667	36	150	0	0	17qB1	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.70053024	sgMsh2	cell line
chr16	65523509	65523509	CA	C	ENSMUST00000184525.1	1	ENSMUSG00000004842	FS	Q/X	28	Pou1f1	ENSMUST00000184525.1:c.85del	ENSMUSP00000139087.1:p.Thr29LeufsTer11	H-2-Kb	8	5	8	SILSLIQL	SILSLIQT	NetMHC	160.85	9792.67	60.881	95	0.232	200.002	7636.079	38.18	9792.67	160.85	11730.9	238.8	5479.48825	192.6371303	3897.086091	207.3671696	M2	2.3	2.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.253	95	0	0	NA	16qC1.3	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr17	30517143	30517143	A	G	ENSMUST00000168787.7	1	ENSMUSG00000062202	missense	I/T	332	Btbd9	ENSMUST00000168787.7:c.995T>C	ENSMUSP00000127300.1:p.Ile332Thr	H-2-Kb	8	9	3	SITNHIRL	SIINHIRL	SMM	191.311	60.359	0.316	173	0.202	256.222	68.701	0.268	29.67	234.64	80	723.9	60.35871704	191.3110256	77.04420888	277.8049629	M2	0.128571429	0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	173	80	13	0.1625	17qA3.3	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.840468194	sgMsh2	cell line
chr16	91896360	91896360	C	T	ENSMUST00000114002.8	5	ENSMUSG00000022957	missense	P/S	1363	Itsn1	ENSMUST00000114002.8:c.4087C>T	ENSMUSP00000109635.2:p.Pro1363Ser	H-2-Kb	8	10	2	MSLSSFIL	MPLSSFIL	NetMHCpan	325.6	5468.3	16.795	152	0.263	403.763	5007.729	12.403	9542.47	363.16	5468.3	325.6	2949.442949	444.3651588	4547.15753	632.0333573	M2	1.785714286	1.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.271	152	6	1	0.166666667	16qC4	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr16	58915901	58915901	GA	G	ENSMUST00000171656.2	2	ENSMUSG00000090629	FS	S/X	247	Olfr180	ENSMUST00000171656.2:c.739del	ENSMUSP00000128358.1:p.Ser247LeufsTer31	H-2-Kb	8	31	0	KTYQWLYF	NA	NetMHCpan	200.7	NA	NA	179	0.302	382.912	NA	NA	NA	489.31	NA	200.7	NA	445.3895263	NA	320.4350395	M2	-0.157142857	-0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.297	179	0	0	NA	16qC1.2	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr16	58915901	58915901	GA	G	ENSMUST00000171656.2	2	ENSMUSG00000090629	FS	S/X	247	Olfr180	ENSMUST00000171656.2:c.739del	ENSMUSP00000128358.1:p.Ser247LeufsTer31	H-2-Kb	8	29	0	VIKTYQWL	NA	SMM	154.433	NA	NA	179	0.302	282.366	NA	NA	NA	556.53	NA	386.6	NA	154.4329616	NA	178.1312026	M2	-0.285714286	-0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.297	179	0	0	NA	16qC1.2	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr17	37751964	37751964	A	G	ENSMUST00000174675.3	5	ENSMUSG00000060017	missense	I/V	37	Olfr121	ENSMUST00000174675.3:c.109A>G	ENSMUSP00000133865.3:p.Ile37Val	H-2-Kb	8	4	8	CFLLFTLV	CFLLFTLI	SMM	253.945	461.041	1.816	423	0.227	479.578	724.227	1.51	850.4	581.81	2002	2533.9	461.0414792	253.9451951	598.0534499	377.3462166	M2	2.928571429	2.928571429	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.219	423	0	0	NA	17qB1	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.920312672	sgMsh2	cell line
chr17	30761096	30761096	GT	G	ENSMUST00000236140.1	NA	ENSMUSG00000033826	FS	F/X	3035	Dnah8	ENSMUST00000236140.1:c.9108del	ENSMUSP00000157469.1:p.Phe3036LeufsTer5	H-2-Kb	8	5	8	TSLDLVFL	TSLDLVFF	SMM	245.89	3997.054	16.255	118	0.144	452.067	3837.777	8.489	5159.69	706.65	3678.5	633.9	3997.053856	245.8895091	3394.220093	270.2340064	M2	2.014285714	2.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.16	118	0	0	NA	17qA3.3	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.672374555	sgMsh2	cell line
chr17	22603195	22603195	T	C	ENSMUST00000097381.4	1	ENSMUSG00000094921	missense	F/L	285	Vmn2r112	ENSMUST00000097381.4:c.853T>C	ENSMUSP00000094994.3:p.Phe285Leu	H-2-Kb	9	9	3	VSLRMWESL	VSFRMWESL	NetMHC	31.83	12.92	0.406	448	0.15	99.157	30.192	0.304	12.92	31.83	16.1	75.5	48.20698829	135.2415065	44.28432201	122.8146005	M2	-0.028571429	0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.147	448	0	0	NA	17qA3.3	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.617744122	sgMsh2	cell line
chr17	37701005	37701005	AT	A	ENSMUST00000213732.1	5	ENSMUSG00000059964	FS	F/X	112	Olfr119	ENSMUST00000213732.1:c.339del	ENSMUSP00000150099.1:p.Phe113LeufsTer3	H-2-Kb	9	4	9	TQMFFFTFL	TQMFFFTFF	NetMHCpan	14.3	117.3	8.203	414	0.217	93.963	252.605	2.688	250.38	40.61	117.3	14.3	271.7127388	161.1053638	254.8296748	147.3160278	M2	2.314285714	2.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.224	414	0	0	NA	17qB1	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.941324377	sgMsh2	cell line
chr17	20994614	20994614	T	C	ENSMUST00000237195.1	NA	ENSMUSG00000045575	missense	I/V	25	Vmn1r233	ENSMUST00000237195.1:c.73A>G	ENSMUSP00000158452.1:p.Ile25Val	H-2-Kb	9	3	9	VIILFQTMV	VIILFQTMI	NetMHC	46.04	63.11	1.371	169	0.296	142.11	130.172	0.916	63.11	46.04	89.3	129.3	171.044849	154.920896	194.6480243	188.4733717	M2	1.857142857	2.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.293	169	0	0	NA	17qA3.2	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr17	34594907	34594907	A	AG	ENSMUST00000038149.12	1	ENSMUSG00000034673	FS	Q/QX	326	Pbx2	ENSMUST00000038149.12:c.983dup	ENSMUSP00000040464.6:p.His329ProfsTer59	H-2-Kb	9	20	0	SNAPFLCRL	NA	NetMHCpan	31.5	NA	NA	36	0.167	99.743	NA	NA	NA	46.69	NA	31.5	NA	152.7953016	NA	235.0985768	M2	1.228571429	1.228571429	FALSE	FALSE	FALSE	1	FALSE	0	Strelka2;Vardict	2	0.1667	36	150	0	0	17qB1	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.70053024	sgMsh2	cell line
chr17	35835148	35835148	C	T	ENSMUST00000001566.9	1	ENSMUSG00000001525	missense	R/H	390	Tubb5	ENSMUST00000001566.9:c.1169G>A	ENSMUSP00000001566.8:p.Arg390His	H-2-Kb	9	8	4	AMFHRKAFL	AMFRRKAFL	NetMHC	66.03	28.95	0.438	166	0.223	75.372	74.147	0.984	28.95	66.03	64.3	99.1	88.73807432	79.08789199	83.99433576	71.65557742	M2	-0.057142857	-0.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.234	166	1812	438	0.241721854	17qB1	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.983347787	sgMsh2	cell line
chr17	13225949	13225949	T	C	ENSMUST00000080647.4	1	ENSMUSG00000073458	missense	C/R	138	Smok2a	ENSMUST00000080647.4:c.412T>C	ENSMUSP00000094432.2:p.Cys138Arg	H-2-Kb	9	8	4	INYRHNQGI	INYCHNQGI	NetMHCpan	30	54.9	1.83	821	0.121	105.887	125.761	1.188	188.04	80.78	54.9	30	133.6934098	144.9138851	117.8284053	130.9935766	M2	-1.7	-1.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.125	821	0	0	NA	17qA1	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.525292621	sgMsh2	cell line
chr17	37751964	37751964	A	G	ENSMUST00000174675.3	5	ENSMUSG00000060017	missense	I/V	37	Olfr121	ENSMUST00000174675.3:c.109A>G	ENSMUSP00000133865.3:p.Ile37Val	H-2-Kb	9	11	1	VLLMFLVSL	ILLMFLVSL	NetMHC	127.87	166.59	1.303	423	0.227	185.568	235.147	1.267	166.59	127.87	243.7	206.3	294.5167504	200.0368468	226.5948317	171.0999962	M2	2.785714286	3.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.219	423	0	0	NA	17qB1	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.920312672	sgMsh2	cell line
chr17	32774731	32774731	T	C	ENSMUST00000159086.9	1	ENSMUSG00000024298	missense	K/R	490	Zfp871	ENSMUST00000159086.9:c.1469A>G	ENSMUSP00000127178.1:p.Lys490Arg	H-2-Kb	9	7	5	SQFQRHKAL	SQFQKHKAL	NetMHC	137.22	270.99	1.975	84	0.369	206.635	341.188	1.651	270.99	137.22	269.6	151.3	460.3731641	307.6876041	411.386466	261.9690589	M2	-0.957142857	-0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.37	84	72	17	0.236111111	17qB1	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	2	1	sgMsh2	cell line
chr17	37701005	37701005	AT	A	ENSMUST00000213732.1	5	ENSMUSG00000059964	FS	F/X	112	Olfr119	ENSMUST00000213732.1:c.339del	ENSMUSP00000150099.1:p.Phe113LeufsTer3	H-2-Kb	9	5	8	QMFFFTFLV	QMFFFTFFG	SMM	56.378	416.016	7.379	414	0.217	130.663	1702.349	13.029	3181.25	152.62	2823.6	205	416.0159675	56.37804345	581.0988286	108.7051201	M2	2.642857143	2.642857143	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.224	414	0	0	NA	17qB1	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.941324377	sgMsh2	cell line
chr17	19066095	19066095	G	T	ENSMUST00000170424.2	5	ENSMUSG00000096717	missense	R/M	285	Vmn2r98	ENSMUST00000170424.2:c.854G>T	ENSMUSP00000131261.1:p.Arg285Met	H-2-Kb	9	9	3	IMMNIEQRL	IMRNIEQRL	NetMHC	155.38	461.59	2.971	392	0.227	251.602	431.344	1.714	461.59	155.38	1041.5	270.9	377.6678362	254.7475407	401.0975415	248.4562923	M2	-0.685714286	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.229	392	0	0	NA	17qA3.2	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.962336082	sgMsh2	cell line
chr17	6029821	6029821	A	AC	ENSMUST00000115791.9	1	ENSMUSG00000023805	FS	-/X	1108-1109	Synj2	ENSMUST00000115791.9:c.3332dup	ENSMUSP00000111457.2:p.Pro1112SerfsTer43	H-2-Kb	9	23	0	VSLRRVHLF	NA	NetMHCpan	211	NA	NA	60	0.217	226.416	NA	NA	NA	220.96	NA	211	NA	235.5645857	NA	231.8729034	M2	0.342857143	0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2167	60	40	0	0	17qA1	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.910647288	sgMsh2	cell line
chr16	65523509	65523509	CA	C	ENSMUST00000184525.1	1	ENSMUSG00000004842	FS	Q/X	28	Pou1f1	ENSMUST00000184525.1:c.85del	ENSMUSP00000139087.1:p.Thr29LeufsTer11	H-2-Kb	9	5	8	SILSLIQLL	SILSLIQTP	NetMHC	271.84	21780.39	80.122	95	0.232	415.546	13849.706	33.329	21780.39	271.84	22114.7	429.2	2600.818226	401.8925911	5919.022625	615.5310989	M2	2.2	2.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.253	95	0	0	NA	16qC1.3	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr17	19053653	19053653	C	A	ENSMUST00000170424.2	5	ENSMUSG00000096717	missense	S/Y	54	Vmn2r98	ENSMUST00000170424.2:c.161C>A	ENSMUSP00000131261.1:p.Ser54Tyr	H-2-Kb	9	7	5	HTFYYLKKM	HTFYSLKKM	NetMHCpan	162.4	2676.5	16.481	108	0.259	315.655	1812.209	5.741	2171.47	303.78	2676.5	162.4	1432.550696	345.2311699	1452.947761	327.5291816	M2	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.273	108	0	0	NA	17qA3.2	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr16	58915901	58915901	GA	G	ENSMUST00000171656.2	2	ENSMUSG00000090629	FS	S/X	247	Olfr180	ENSMUST00000171656.2:c.739del	ENSMUSP00000128358.1:p.Ser247LeufsTer31	H-2-Kb	9	31	0	KTYQWLYFI	NA	NetMHCpan	171.2	NA	NA	179	0.302	384.332	NA	NA	NA	307.23	NA	171.2	NA	461.4344339	NA	521.4948213	M2	0.585714286	0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.297	179	0	0	NA	16qC1.2	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr17	27706002	27706002	A	G	ENSMUST00000232437.1	NA	ENSMUSG00000040276	missense	Q/R	230	Pacsin1	ENSMUST00000232437.1:c.689A>G	ENSMUSP00000155999.1:p.Gln230Arg	H-2-Kb	9	7	5	QVFERCQQF	QVFEQCQQF	SMMPMBEC	220.419	798.454	3.622	65	0.246	330.522	1059.932	3.207	1321.41	437.63	2772	716.8	674.6988967	223.4138023	798.4541822	220.4194935	M2	-0.985714286	-0.785714286	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.27	65	0	0	NA	17qA3.3	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr16	58926453	58926453	T	C	ENSMUST00000205986.3	2	ENSMUSG00000090951	missense	I/M	39	Olfr181	ENSMUST00000205986.3:c.117A>G	ENSMUSP00000145877.2:p.Ile39Met	H-2-Kb	9	3	9	FSAIYLVTM	FSAIYLVTI	SMM	339.711	641.372	1.888	243	0.21	388.31	695.236	1.79	910.5	521.58	749.1	436.8	641.3720055	339.7113053	579.7623384	339.8208329	M2	2.028571429	2.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.215	243	0	0	NA	16qC1.3	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	0.903503308	sgMsh2	cell line
chr17	56632320	56632320	T	G	ENSMUST00000112979.3	1	ENSMUSG00000040828	missense	F/V	50	Catsperd	ENSMUST00000112979.3:c.148T>G	ENSMUSP00000108603.2:p.Phe50Val	H-2-Db	9	5	7	YAFPNTVVL	YAFPNTFVL	NetMHCpan	9.1	7.6	0.835	128	0.227	33.615	30.922	0.92	12.57	10.27	7.6	9.1	49.27424743	62.03260224	49.83907806	56.96000254	M2	1.314285714	1.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	128	2	0	0	17qD	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.949729059	sgMsh2	cell line
chr18	37680939	37680939	G	T	ENSMUST00000192931.1	1	ENSMUSG00000103037	missense	S/I	161	Pcdhgb1	ENSMUST00000192931.1:c.482G>T	ENSMUSP00000141348.1:p.Ser161Ile	H-2-Db	9	3	9	NSLKMYTVI	NSLKMYTVS	NetMHC	158.89	19903.22	125.264	217	0.493	356.594	9153.28	25.669	19903.22	158.89	14990.9	524.3	2996.539453	391.3992598	3315.660076	321.7881152	M2	1.214285714	1.214285714	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.495	217	2	1	0.5	18qB3	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	2	1	sgMsh2	cell line
chr18	37021442	37021442	T	C	ENSMUST00000047614.3	1	ENSMUSG00000103310	missense	Y/H	405	Pcdha12	ENSMUST00000047614.3:c.1213T>C	ENSMUSP00000047609.1:p.Tyr405His	H-2-Db	9	5	7	STFKNYHSL	STFKNYYSL	NetMHCpan	36.5	34.8	0.953	214	0.201	221.131	155.833	0.705	81.22	180.1	34.8	36.5	270.7821299	272.659102	230.4464382	262.162156	M2	-0.871428571	-0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.206	214	0	0	NA	18qB2	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	0.86568224	sgMsh2	cell line
chr17	84697532	84697532	T	C	ENSMUST00000045714.14	1	ENSMUSG00000024254	missense	F/L	576	Abcg8	ENSMUST00000045714.14:c.1726T>C	ENSMUSP00000035246.8:p.Phe576Leu	H-2-Db	9	10	2	GLMINLDNL	GFMINLDNL	NetMHCpan	367.1	1384.4	3.771	90	0.256	482.343	875.659	1.815	1955.18	698.93	1384.4	367.1	313.0545354	536.5621085	366.91883	428.1244195	M2	0.5	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	90	0	0	NA	17qE4	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr18	37295830	37295830	A	C	ENSMUST00000056522.4	NA	ENSMUSG00000051599	missense	Q/H	285	Pcdhb2	ENSMUST00000056522.4:c.855A>C	ENSMUSP00000057921.3:p.Gln285His	H-2-Kb	8	5	7	IAYAFSHA	IAYAFSQA	NetMHC	5.7	7.88	1.382	185	0.238	19.594	24.972	1.274	7.88	5.7	17.9	14.2	38.52476516	28.88949831	32.04350395	24.98848923	M2	0.414285714	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.233	185	1	0	0	18qB3	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	0.979145446	sgMsh2	cell line
chr17	84697532	84697532	T	C	ENSMUST00000045714.14	1	ENSMUSG00000024254	missense	F/L	576	Abcg8	ENSMUST00000045714.14:c.1726T>C	ENSMUSP00000035246.8:p.Phe576Leu	H-2-Kb	8	4	8	SFYLTAGL	SFYLTAGF	NetMHC	15.37	172.25	11.207	90	0.256	31.057	352.868	11.362	172.25	15.37	298.6	61	482.7696948	29.69887511	407.1364636	32.41455024	M2	1.4	1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	90	0	0	NA	17qE4	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr18	61697778	61697778	T	C	ENSMUST00000025472.6	1	ENSMUSG00000024579	missense	Y/C	341	Pcyox1l	ENSMUST00000025472.6:c.1022A>G	ENSMUSP00000025472.1:p.Tyr341Cys	H-2-Kb	8	5	7	VSLVHGCL	VSLVHGYL	NetMHC	42.26	7.17	0.17	86	0.314	48.333	15.42	0.319	7.17	42.26	15	81.6	15.83944645	48.27696948	17.44777291	48.38825938	M2	1.414285714	1.471428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.309	86	60	19	0.316666667	18qE1	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr17	38082114	38082114	A	G	ENSMUST00000216523.1	5	ENSMUSG00000043312	missense	M/T	288	Olfr131	ENSMUST00000216523.1:c.863T>C	ENSMUSP00000150562.1:p.Met288Thr	H-2-Kb	8	8	4	ITPTLNPL	ITPMLNPL	NetMHC	80.3	53.48	0.666	148	0.209	136.287	121.388	0.891	53.48	80.3	100.3	182.4	146.4670721	126.107234	142.4754378	146.4670721	M2	-0.071428571	0.028571429	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.214	148	0	0	NA	17qB1	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.899300967	sgMsh2	cell line
chr17	43624386	43624386	T	C	ENSMUST00000045717.6	1	ENSMUSG00000040140	missense	I/V	1924	Tdrd6	ENSMUST00000045717.6:c.5770A>G	ENSMUSP00000035338.6:p.Ile1924Val	H-2-Kb	8	11	1	VSPLSAAV	ISPLSAAV	NetMHC	90.41	98.63	1.091	42	0.119	200.803	203.395	1.013	98.63	90.41	404.2	417.4	177.3127641	166.241711	229.4774419	235.3639803	M2	1.2	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.135	42	0	0	NA	17qB3	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.567316031	sgMsh2	cell line
chr18	22017446	22017446	T	C	ENSMUST00000234736.1	NA	ENSMUSG00000024306	missense	D/G	710	Ccdc178	ENSMUST00000234736.1:c.2129A>G	ENSMUSP00000157323.1:p.Asp710Gly	H-2-Kb	8	6	6	VHGVYGHL	VHGVYDHL	NetMHC	93.09	638.23	6.856	64	0.219	110.084	462.238	4.199	638.23	93.09	1461.9	402.4	286.246378	121.8260042	272.1071791	98.3422182	M2	-0.071428571	-0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.23	64	0	0	NA	18qA2	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	0.966538423	sgMsh2	cell line
chr17	56777470	56777470	T	C	ENSMUST00000002444.14	1	ENSMUSG00000024206	missense	N/S	668	Rfx2	ENSMUST00000002444.14:c.2003A>G	ENSMUSP00000002444.7:p.Asn668Ser	H-2-Kb	8	6	6	VMGEFSDL	VMGEFNDL	NetMHC	113.49	324.64	2.861	56	0.161	192.202	326.647	1.699	324.64	113.49	576.2	261.7	313.8629122	193.9724271	328.6548155	190.4320313	M2	0.042857143	0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.156	56	1	0	0	17qD	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.655565191	sgMsh2	cell line
chr18	6788502	6788502	T	C	ENSMUST00000097680.6	1	ENSMUSG00000073639	missense	M/T	134	Rab18	ENSMUST00000097680.6:c.401T>C	ENSMUSP00000095285.6:p.Met134Thr	H-2-Kb	8	10	2	VTVYSVPL	VMVYSVPL	NetMHCpan	69.6	62.7	0.901	76	0.329	174.805	270.172	1.546	147.03	132.97	62.7	69.6	393.3145385	216.6406749	406.2000757	225.8083514	M2	1.114285714	1.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.352	76	579	160	0.276338515	18qA1	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	2	1	sgMsh2	cell line
chr18	56491908	56491908	A	C	ENSMUST00000237355.1	NA	ENSMUSG00000001700	missense	I/L	358	Gramd3	ENSMUST00000237355.1:c.1072A>C	ENSMUSP00000157710.1:p.Ile358Leu	H-2-Kb	8	4	8	AIIVCALL	AIIVCALI	NetMHC	138.87	1449.26	10.436	64	0.344	182.51	1386.404	7.596	1449.26	138.87	2402.7	511.3	1323.548926	204.0515979	924.1447486	160.9681675	M2	3.585714286	3.585714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.344	64	23	9	0.391304348	18qD3	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	2	1	sgMsh2	cell line
chr17	42592968	42592968	TA	T	ENSMUST00000068355.7	1	ENSMUSG00000043972	FS	Y/X	159	Opn5	ENSMUST00000068355.7:c.475del	ENSMUSP00000063542.6:p.Tyr159MetfsTer43	H-2-Kb	8	5	7	LAVIWAML	LAVIWAYA	NetMHCpan	147.2	3567.3	24.234	44	0.227	206.513	4062.47	19.672	6717.72	182.49	3567.3	147.2	4557.639811	321.1737185	2604.593785	230.5366617	M2	2.442857143	2.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.244	44	2	0	0	17qB3	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr17	40228805	40228805	A	G	ENSMUST00000026499.5	1	ENSMUSG00000025433	missense	V/A	167	Crisp3	ENSMUST00000026499.5:c.500T>C	ENSMUSP00000026499.5:p.Val167Ala	H-2-Kb	8	10	2	YACRYCPV	YVCRYCPV	SMMPMBEC	174.478	161.339	0.925	358	0.209	239.579	312.449	1.304	429.13	286.52	494.4	303	195.7672319	192.6371303	161.3392375	174.4777291	M2	0.514285714	0.514285714	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.22	358	1	1	1	17qB2	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.924515013	sgMsh2	cell line
chr17	83477824	83477824	T	C	ENSMUST00000096766.11	1	ENSMUSG00000032624	missense	L/P	875	Eml4	ENSMUST00000096766.11:c.2624T>C	ENSMUSP00000094528.4:p.Leu875Pro	H-2-Kb	8	5	7	SIIQWKPV	SIIQWKLV	SMMPMBEC	267.141	735.766	2.754	108	0.38	337.819	1037.14	3.07	1227.56	355.94	1662.3	657.1	846.7203545	319.6980594	735.7664827	267.1406633	M2	0.471428571	0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.379	108	74	16	0.216216216	17qE4	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	2	1	sgMsh2	cell line
chr17	38304994	38304994	T	C	ENSMUST00000213505.1	5	ENSMUSG00000054940	missense	T/A	156	Olfr137	ENSMUST00000213505.1:c.466A>G	ENSMUSP00000150173.1:p.Thr156Ala	H-2-Kb	8	7	5	CGFTASAL	CGFTTSAL	SMM	193.972	284.931	1.469	125	0.216	240.585	312.177	1.298	583.32	395.88	277.8	199.5	284.9311953	193.9724271	339.4220093	281.6696149	M2	1.185714286	1.185714286	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.229	125	0	0	NA	17qB1	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.962336082	sgMsh2	cell line
chr18	37941753	37941753	A	G	ENSMUST00000043498.8	1	ENSMUSG00000024454	missense	S/P	312	Hdac3	ENSMUST00000043498.8:c.934T>C	ENSMUSP00000037981.7:p.Ser312Pro	H-2-Kb	8	6	6	WTYETPLL	WTYETSLL	SMMPMBEC	359.534	238.638	0.664	219	0.256	430.684	272.762	0.633	289.23	493.46	348.5	494.9	256.2949211	367.908651	238.6382195	359.5340277	M2	-0.028571429	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.26	219	227	45	0.198237885	18qB3	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr18	37021442	37021442	T	C	ENSMUST00000047614.3	1	ENSMUSG00000103310	missense	Y/H	405	Pcdha12	ENSMUST00000047614.3:c.1213T>C	ENSMUSP00000047609.1:p.Tyr405His	H-2-Kb	8	8	4	KNYHSLVL	KNYYSLVL	NetMHCpan	150	57	0.38	214	0.201	428.416	356.888	0.833	345.02	673.56	57	150	368.7567681	366.2182643	518.4895408	490.6140712	M2	0.428571429	0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.206	214	0	0	NA	18qB2	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	0.86568224	sgMsh2	cell line
chr18	37473936	37473936	T	C	ENSMUST00000050034.2	NA	ENSMUSG00000047033	missense	F/L	74	Pcdhb15	ENSMUST00000050034.2:c.220T>C	ENSMUSP00000059598.1:p.Phe74Leu	H-2-Kb	8	10	2	RLLLLSPL	RFLLLSPL	SMMPMBEC	429.279	192.637	0.449	74	0.27	459.126	249.124	0.543	305.61	971.72	348.4	437.7	163.5836898	480.5515695	192.6371303	429.2793522	M2	2.371428571	2.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.273	74	0	0	NA	18qB3	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr18	37021442	37021442	T	C	ENSMUST00000047614.3	1	ENSMUSG00000103310	missense	Y/H	405	Pcdha12	ENSMUST00000047614.3:c.1213T>C	ENSMUSP00000047609.1:p.Tyr405His	H-2-Kb	8	6	6	TFKNYHSL	TFKNYYSL	SMM	267.756	194.42	0.726	214	0.201	366.723	239.62	0.653	359	1171.72	262.6	447.2	194.4195797	267.7564861	216.6406749	286.246378	M2	-0.871428571	-0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.206	214	0	0	NA	18qB2	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	0.86568224	sgMsh2	cell line
chr18	37021442	37021442	T	C	ENSMUST00000047614.3	1	ENSMUSG00000103310	missense	Y/H	405	Pcdha12	ENSMUST00000047614.3:c.1213T>C	ENSMUSP00000047609.1:p.Tyr405His	H-2-Kb	9	5	7	STFKNYHSL	STFKNYYSL	NetMHCpan	15.4	13.9	0.903	214	0.201	61.313	45.651	0.745	16.12	22.6	13.9	15.4	75.18132925	100.0253316	87.34740358	104.5321782	M2	-0.871428571	-0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.206	214	0	0	NA	18qB2	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	0.86568224	sgMsh2	cell line
chr18	7429283	7429283	C	A	ENSMUST00000234812.1	NA	ENSMUSG00000057440	missense	A/S	343	Mpp7	ENSMUST00000234812.1:c.1027G>T	ENSMUSP00000157345.1:p.Ala343Ser	H-2-Kb	9	11	1	SGFRRSFRL	AGFRRSFRL	NetMHCpan	19.8	32.1	1.621	153	0.235	77.68	126.893	1.634	64.94	33.43	32.1	19.8	188.8469608	121.9298389	196.4490803	143.6316005	M2	-0.7	-0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.236	153	0	0	NA	18qA1	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	0.991752469	sgMsh2	cell line
chr17	84697532	84697532	T	C	ENSMUST00000045714.14	1	ENSMUSG00000024254	missense	F/L	576	Abcg8	ENSMUST00000045714.14:c.1726T>C	ENSMUSP00000035246.8:p.Phe576Leu	H-2-Kb	9	3	9	NSFYLTAGL	NSFYLTAGF	NetMHC	85.47	432.59	5.061	90	0.256	225.767	521.843	2.311	432.59	85.47	325	89.2	611.0967866	362.3347605	709.9863514	410.4403034	M2	1.4	1.4	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	90	0	0	NA	17qE4	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr17	56900050	56900050	AC	A	ENSMUST00000025053.9	1	ENSMUSG00000024212	FS	V/X	265	Mllt1	ENSMUST00000025053.9:c.793del	ENSMUSP00000025053.8:p.Val265CysfsTer161	H-2-Kb	9	79	0	VSLGRPSGL	NA	SMM	108.42	NA	NA	59	0.271	126.297	NA	NA	NA	129.78	NA	224.6	NA	108.4201491	NA	122.8146005	M2	-0.014285714	-0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.276	59	54	3	0.055555556	17qD	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr18	37302556	37302556	A	G	ENSMUST00000051754.1	NA	ENSMUSG00000045498	missense	Q/R	525	Pcdhb3	ENSMUST00000051754.1:c.1574A>G	ENSMUSP00000059180.1:p.Gln525Arg	H-2-Kb	9	11	1	RAFEFHVGA	QAFEFHVGA	NetMHCpan	110.2	284.7	2.583	235	0.23	481.759	390.709	0.811	172.28	176.02	284.7	110.2	496.7181164	857.254947	579.7623384	787.4989801	M2	0.642857143	0.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.24	235	0	0	NA	18qB3	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr17	84697532	84697532	T	C	ENSMUST00000045714.14	1	ENSMUSG00000024254	missense	F/L	576	Abcg8	ENSMUST00000045714.14:c.1726T>C	ENSMUSP00000035246.8:p.Phe576Leu	H-2-Kb	9	4	8	SFYLTAGLM	SFYLTAGFM	NetMHC	185.37	344.02	1.856	90	0.256	368.163	542.485	1.473	344.02	185.37	582.5	462.1	502.4698412	274.2268658	867.4610828	521.4948213	M2	1.271428571	1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	90	0	0	NA	17qE4	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr18	37680939	37680939	G	T	ENSMUST00000192931.1	1	ENSMUSG00000103037	missense	S/I	161	Pcdhgb1	ENSMUST00000192931.1:c.482G>T	ENSMUSP00000141348.1:p.Ser161Ile	H-2-Kb	9	10	2	VIPNPHFSL	VSPNPHFSL	NetMHC	211.65	119.37	0.564	217	0.493	410.119	267.215	0.652	119.37	211.65	107.8	235.3	415.0591573	584.9382211	522.696991	774.9077422	M2	-0.585714286	0.228571429	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.495	217	2	1	0.5	18qB3	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	2	1	sgMsh2	cell line
chr18	37295830	37295830	A	C	ENSMUST00000056522.4	NA	ENSMUSG00000051599	missense	Q/H	285	Pcdhb2	ENSMUST00000056522.4:c.855A>C	ENSMUSP00000057921.3:p.Gln285His	H-2-Kb	9	5	7	IAYAFSHAS	IAYAFSQAS	SMM	135.242	106.196	0.785	185	0.238	204.88	154.26	0.753	109.82	231.36	198.7	178.4	106.1964502	135.2415065	221.9473684	283.3022345	M2	0.042857143	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.233	185	1	0	0	18qB3	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	0.979145446	sgMsh2	cell line
chr17	56632320	56632320	T	G	ENSMUST00000112979.3	1	ENSMUSG00000040828	missense	F/V	50	Catsperd	ENSMUST00000112979.3:c.148T>G	ENSMUSP00000108603.2:p.Phe50Val	H-2-Kb	9	3	9	LFYAFPNTV	LFYAFPNTF	NetMHCpan	233	338.6	1.453	128	0.227	281.738	333.442	1.184	338.69	258.61	338.6	233	228.6177783	304.8667072	328.2842143	424.864065	M2	0.242857143	0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	128	2	0	0	17qD	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.949729059	sgMsh2	cell line
chr18	25340381	25340381	A	G	ENSMUST00000097643.9	5	ENSMUSG00000033632	missense	N/S	414	AW554918	ENSMUST00000097643.9:c.1241A>G	ENSMUSP00000095248.3:p.Asn414Ser	H-2-Kb	9	10	2	YSWLRTQAM	YNWLRTQAM	NetMHCpan	246.9	389.9	1.579	53	0.245	285.227	354.619	1.243	397.05	289.33	389.9	246.9	301.3769268	283.2109234	319.3375581	287.2433612	M2	-0.3	-0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.269	53	6	1	0.166666667	18qA2	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr18	35739535	35739535	C	A	ENSMUST00000115728.4	1	ENSMUSG00000024349	missense	G/C	15	Tmem173	ENSMUST00000115728.4:c.43G>T	ENSMUSP00000111393.3:p.Gly15Cys	H-2-Kb	9	11	1	CHRSKYVAL	GHRSKYVAL	SMM	254.162	445.769	1.754	123	0.268	347.718	763.45	2.196	1039.09	298.93	2837.6	937.9	445.7691405	254.1616376	487.8092149	396.5062159	M2	-0.1	-0.1	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.274	123	28	11	0.392857143	18qB2	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr18	44847844	44847844	A	G	ENSMUST00000037763.10	1	ENSMUSG00000034653	missense	Q/R	502	Ythdc2	ENSMUST00000037763.10:c.1505A>G	ENSMUSP00000048340.7:p.Gln502Arg	H-2-Kb	9	9	3	FARVFHLIL	FAQVFHLIL	SMM	224.962	422.776	1.879	110	0.164	340.8	495.95	1.455	462.4	364.46	529.5	447.6	422.7756832	224.9624328	563.9622051	317.1392538	M2	1.628571429	1.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.183	110	32	7	0.21875	18qB3	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	0.769028397	sgMsh2	cell line
chr17	38130482	38130482	C	CT	ENSMUST00000216804.1	5	ENSMUSG00000067186	FS	-/X	236-237	Olfr132	ENSMUST00000216804.1:c.708dup	ENSMUSP00000149593.1:p.Ala237SerfsTer33	H-2-Kb	9	13	0	IWHLYFSPS	NA	SMM	41.031	NA	NA	173	0.231	234.295	NA	NA	NA	378.38	NA	778.2	NA	41.03080144	NA	90.20902731	M2	-0.157142857	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.237	173	0	0	NA	17qB1	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.99595481	sgMsh2	cell line
chr18	37941753	37941753	A	G	ENSMUST00000043498.8	1	ENSMUSG00000024454	missense	S/P	312	Hdac3	ENSMUST00000043498.8:c.934T>C	ENSMUSP00000037981.7:p.Ser312Pro	H-2-Kb	9	4	8	RCWTYETPL	RCWTYETSL	SMMPMBEC	408.555	698.634	1.71	219	0.256	457.95	789.442	1.724	880.25	477.4	638	438.5	1244.829868	714.6773197	698.6344547	408.5545015	M2	-0.7	-0.7	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.26	219	227	45	0.198237885	18qB3	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr18	24017798	24017798	CA	C	ENSMUST00000066497.11	1	ENSMUSG00000051469	FS	L/X	97	Zfp24	ENSMUST00000066497.11:c.290del	ENSMUSP00000064637.5:p.Leu97TrpfsTer31	H-2-Kb	9	16	0	PSYPRSYRL	NA	SMM	79.82	NA	NA	57	0.281	228.119	NA	NA	NA	511.59	NA	329.4	NA	79.81968324	NA	126.8381795	M2	-1.457142857	-1.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.281	57	54	2	0.037037037	18qA2	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr18	44847844	44847844	A	G	ENSMUST00000037763.10	1	ENSMUSG00000034653	missense	Q/R	502	Ythdc2	ENSMUST00000037763.10:c.1505A>G	ENSMUSP00000048340.7:p.Gln502Arg	H-2-Kb	9	7	5	DAFARVFHL	DAFAQVFHL	NetMHCpan	355	1026.1	2.89	110	0.164	436.068	1456.594	3.34	1952.22	609.77	1026.1	355	1233.417199	408.4228203	1679.770694	463.713778	M2	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.183	110	32	7	0.21875	18qB3	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	0.769028397	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Db	9	5	9	SNVVNHFFV	SNVVNHFFC	NetMHC	33.28	4264.52	128.141	241	0.191	169.809	3110.826	18.32	4264.52	33.28	4326.5	48.8	1957.131469	290.8171406	1310.901318	321.7881152	M2	1.642857143	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.181	241	0	0	NA	19qA	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.760623715	sgMsh2	cell line
chr19	7879416	7879416	A	T	ENSMUST00000075619.4	1	ENSMUSG00000067656	missense	I/N	419	Slc22a27	ENSMUST00000075619.4:c.1256T>A	ENSMUSP00000093991.1:p.Ile419Asn	H-2-Db	9	7	5	RGIFNLIAV	RGIFILIAV	NetMHC	61.93	19355.93	312.545	261	0.176	159.223	11684.122	73.382	19355.93	61.93	10726.9	78.8	11657.89126	246.388254	11710.35336	239.6458982	M2	2.585714286	2.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.186	261	0	0	NA	19qA	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.78163542	sgMsh2	cell line
chr19	31083214	31083214	A	T	ENSMUST00000066039.7	NA	ENSMUSG00000053536	missense	D/V	50	Cstf2t	ENSMUST00000066039.7:c.149A>T	ENSMUSP00000093831.3:p.Asp50Val	H-2-Kb	8	4	8	VSFRLVYV	VSFRLVYD	NetMHC	12.06	3204.4	265.705	150	0.187	19.532	1434.729	73.455	3204.4	12.06	2724	17.3	145.4587999	21.76406428	126.3979412	22.21979255	M2	1.2	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.192	150	61	13	0.213114754	19qC1	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.806849466	sgMsh2	cell line
chr19	13502426	13502426	A	G	ENSMUST00000217001.1	2	ENSMUSG00000071629	missense	I/V	28	Olfr1477	ENSMUST00000217001.1:c.82A>G	ENSMUSP00000149565.1:p.Ile28Val	H-2-Kb	8	11	1	VIFTLIYL	IIFTLIYL	SMM	15.267	16.283	1.067	526	0.211	17.014	18.256	1.073	19.54	16.62	27.2	23.8	16.2832091	15.26651821	16.97227266	17.40764414	M2	2.485714286	2.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.202	526	0	0	NA	19qA	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.848872876	sgMsh2	cell line
chr19	10207246	10207246	T	G	ENSMUST00000040372.13	1	ENSMUSG00000036372	missense	F/V	66	Tmem258	ENSMUST00000040372.13:c.196T>G	ENSMUSP00000044751.7:p.Phe66Val	H-2-Kb	8	11	1	VGVLFLLL	FGVLFLLL	NetMHC	19.2	194.49	10.13	149	0.268	37.169	178.287	4.797	194.49	19.2	271.5	29.8	162.0839455	44.53895263	157.666708	44.53895263	M2	3.114285714	3.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.27	149	330	94	0.284848485	19qA	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	2	1	sgMsh2	cell line
chr19	44973627	44973627	T	C	ENSMUST00000096053.4	1	ENSMUSG00000036097	missense	I/T	1081	Slf2	ENSMUST00000096053.4:c.3242T>C	ENSMUSP00000093758.3:p.Ile1081Thr	H-2-Kb	8	8	4	LTYTLLHL	LTYILLHL	NetMHCpan	21.4	34.2	1.598	331	0.257	46.318	52.591	1.135	36.2	30.3	34.2	21.4	74.08665723	69.6209588	68.98267002	62.33615346	M2	0.785714286	0.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.243	331	82	16	0.195121951	19qC3	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr19	10207246	10207246	T	G	ENSMUST00000040372.13	1	ENSMUSG00000036372	missense	F/V	66	Tmem258	ENSMUST00000040372.13:c.196T>G	ENSMUSP00000044751.7:p.Phe66Val	H-2-Kb	8	4	8	VASLFMGV	VASLFMGF	NetMHC	37.83	202.78	5.36	149	0.268	128.266	476.977	3.719	202.78	37.83	174.7	78.4	810.4757034	178.1312026	751.173053	216.6406749	M2	1.9	1.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.27	149	330	94	0.284848485	19qA	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	2	1	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	8	13	1	VTFPHYWL	NA	NetMHCpan	13.9	NA	NA	241	0.191	31.617	NA	NA	NA	50.29	NA	13.9	NA	24.5323979	NA	38.70258739	M2	-0.157142857	-0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.181	241	0	0	NA	19qA	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.760623715	sgMsh2	cell line
chr18	75519813	75519813	T	C	ENSMUST00000165559.2	5	ENSMUSG00000052928	missense	K/E	458	Ctif	ENSMUST00000165559.2:c.1372A>G	ENSMUSP00000129974.1:p.Lys458Glu	H-2-Kb	8	5	7	FAFTAAEL	FAFTAAKL	NetMHC	81.29	76.52	0.941	45	0.289	124.469	90.585	0.728	76.52	81.29	76	111.3	104.6501849	137.6385219	105.6185011	153.0171117	M2	1.114285714	1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.267	45	6	1	0.166666667	18qE3	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr19	44973627	44973627	T	C	ENSMUST00000096053.4	1	ENSMUSG00000036097	missense	I/T	1081	Slf2	ENSMUST00000096053.4:c.3242T>C	ENSMUSP00000093758.3:p.Ile1081Thr	H-2-Kb	8	5	7	AYYLTYTL	AYYLTYIL	NetMHC	157.88	325.67	2.063	331	0.257	364.856	839.945	2.302	325.67	157.88	374.5	180.5	1305.389154	569.823033	1434.630303	549.2119775	M2	0.328571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.243	331	82	16	0.195121951	19qC3	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr19	13781062	13781062	C	A	ENSMUST00000219412.1	NA	ENSMUSG00000048356	missense	P/Q	150	Olfr1496	ENSMUST00000219412.1:c.449C>A	ENSMUSP00000151386.1:p.Pro150Gln	H-2-Kb	8	7	5	LSFCQWAL	LSFCPWAL	SMM	147.143	234.823	1.596	246	0.142	171.27	242.281	1.415	249.74	185.44	169.7	157.1	234.8226582	147.1431334	284.9311953	214.1608096	M2	0.814285714	0.814285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.157	246	0	0	NA	19qA	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.659767532	sgMsh2	cell line
chr19	44973627	44973627	T	C	ENSMUST00000096053.4	1	ENSMUSG00000036097	missense	I/T	1081	Slf2	ENSMUST00000096053.4:c.3242T>C	ENSMUSP00000093758.3:p.Ile1081Thr	H-2-Kb	8	6	6	YYLTYTLL	YYLTYILL	NetMHCpan	165.3	361.7	2.188	331	0.257	245.167	350.171	1.428	417.91	195.39	361.7	165.3	333.2268594	301.8144301	338.6413603	294.9442949	M2	1.057142857	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.243	331	82	16	0.195121951	19qC3	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	8	8	6	VNHFFVTF	VNHFFCDI	NetMHCpan	52.1	72.4	1.39	241	0.191	262.687	291.68	1.11	265.13	217.24	72.4	52.1	318.2291802	353.7854762	330.1718172	308.1342684	M2	0.742857143	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.181	241	0	0	NA	19qA	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.760623715	sgMsh2	cell line
chr19	5982837	5982837	A	C	ENSMUST00000041827.7	1	ENSMUSG00000037451	missense	S/A	267	Slc22a20	ENSMUST00000041827.7:c.799T>G	ENSMUSP00000049473.7:p.Ser267Ala	H-2-Kb	8	6	6	VFFLYAWW	VFFLYSWW	SMM	21.22	47.945	2.259	29	0.241	168.912	331.805	1.964	564.13	295.97	4006.7	4116.2	47.94463315	21.21973715	99.48096742	41.85429201	M2	1.157142857	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.241	29	0	0	NA	19qA	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	sgMsh2	cell line
chr19	13235020	13235020	A	G	ENSMUST00000207246.3	2	ENSMUSG00000096365	missense	I/V	257	Olfr1463	ENSMUST00000207246.3:c.769A>G	ENSMUSP00000146566.1:p.Ile257Val	H-2-Kb	8	8	4	GTTVFMYL	GTTIFMYL	SMMPMBEC	200.789	238.638	1.189	189	0.185	307.737	384.687	1.25	519.65	368.45	501	458	268.3737286	247.0244836	238.6382195	200.7890385	M2	1.428571429	1.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.205	189	0	0	NA	19qA	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.861479899	sgMsh2	cell line
chr19	10054643	10054643	A	G	ENSMUST00000115995.3	1	ENSMUSG00000024664	missense	H/R	266	Fads3	ENSMUST00000115995.3:c.797A>G	ENSMUSP00000111659.2:p.His266Arg	H-2-Kb	8	11	1	RQHLYFFL	HQHLYFFL	SMMPMBEC	135.75	290.228	2.138	186	0.215	153.427	437.353	2.851	1305.83	369.59	505.1	167.3	369.6068402	139.5532644	290.2284617	135.7500506	M2	0.742857143	0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.209	186	386	112	0.29015544	19qA	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.878289263	sgMsh2	cell line
chr19	5673337	5673337	G	T	ENSMUST00000113615.8	1	ENSMUSG00000054874	missense	L/I	1277	Pcnx3	ENSMUST00000113615.8:c.3829C>A	ENSMUSP00000109245.2:p.Leu1277Ile	H-2-Kb	8	8	4	MLFIQALL	MLFLQALL	SMM	129.342	107.088	0.828	57	0.175	153.992	129.026	0.838	277.12	378.91	129.6	145.9	107.0878008	129.3421274	128.4517425	162.0839455	M2	2.428571429	2.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.182	57	106	19	0.179245283	19qA	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	sgMsh2	cell line
chr19	39513332	39513332	C	A	ENSMUST00000025968.4	1	ENSMUSG00000025003	missense	L/I	110	Cyp2c39	ENSMUST00000025968.4:c.328C>A	ENSMUSP00000025968.4:p.Leu110Ile	H-2-Kb	8	11	1	IGIVFSNG	LGIVFSNG	SMM	75.464	357.882	4.742	223	0.211	303.695	1406.518	4.631	3944.61	516.87	2426.9	728.5	357.8821189	75.46403103	386.1357391	90.51905263	M2	0.914285714	1.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.204	223	0	0	NA	19qC3	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.857277558	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	8	17	0	HYWLFLAL	NA	SMMPMBEC	198.948	NA	NA	241	0.191	324.952	NA	NA	NA	632.06	NA	372.1	NA	277.8049629	NA	198.9481935	M2	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.181	241	0	0	NA	19qA	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.760623715	sgMsh2	cell line
chr19	16383254	16383254	G	A	ENSMUST00000025541.5	1	ENSMUSG00000024639	missense	V/M	314	Gnaq	ENSMUST00000025541.5:c.940G>A	ENSMUSP00000025541.5:p.Val314Met	H-2-Kb	8	6	6	ILKMFMDL	ILKMFVDL	NetMHCpan	249.7	319.7	1.28	174	0.126	388.374	474.546	1.222	1460.9	633.96	319.7	249.7	595.3056439	459.9811133	353.7854762	316.7670499	M2	0.971428571	1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.144	174	337	42	0.12462908	19qA	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.6051371	sgMsh2	cell line
chr19	5880446	5880446	G	T	ENSMUST00000025732.13	1	ENSMUSG00000024818	missense	G/C	54	Slc25a45	ENSMUST00000025732.13:c.160G>T	ENSMUSP00000025732.7:p.Gly54Cys	H-2-Kb	8	9	3	VLCFFKGM	VLGFFKGM	NetMHCpan	190.4	236.1	1.24	70	0.357	445.082	1030.027	2.314	1135.91	779.46	236.1	190.4	1290.446488	506.6872779	924.1447486	383.4775994	M2	1.357142857	1.685714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.365	70	1	1	1	19qA	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	sgMsh2	cell line
chr19	13146291	13146291	C	T	ENSMUST00000213493.1	5	ENSMUSG00000057503	missense	A/T	123	Olfr1459	ENSMUST00000213493.1:c.367G>A	ENSMUSP00000150886.1:p.Ala123Thr	H-2-Kb	9	4	8	MAYDRYATV	MAYDRYAAV	NetMHC	7.57	6.49	0.857	525	0.2	17.709	17.146	0.968	6.49	7.57	10.4	9.7	24.66664026	26.18846237	23.89186213	25.71875847	M2	-0.757142857	-0.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	525	0	0	NA	19qA	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.840468194	sgMsh2	cell line
chr19	5673337	5673337	G	T	ENSMUST00000113615.8	1	ENSMUSG00000054874	missense	L/I	1277	Pcnx3	ENSMUST00000113615.8:c.3829C>A	ENSMUSP00000109245.2:p.Leu1277Ile	H-2-Kb	9	6	6	SAMLFIQAL	SAMLFLQAL	NetMHC	14.32	10.91	0.762	57	0.175	66.24	43.585	0.658	10.91	14.32	13.7	15.5	73.46999326	116.9795644	106.4755765	155.3280893	M2	2.157142857	2.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.182	57	106	19	0.179245283	19qA	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	sgMsh2	cell line
chr19	5880446	5880446	G	T	ENSMUST00000025732.13	1	ENSMUSG00000024818	missense	G/C	54	Slc25a45	ENSMUST00000025732.13:c.160G>T	ENSMUSP00000025732.7:p.Gly54Cys	H-2-Kb	9	8	4	SVLCFFKGM	SVLGFFKGM	NetMHCpan	18.9	23.6	1.249	70	0.357	60.733	61.813	1.018	21.78	22.13	23.6	18.9	100.0253316	99.3367621	141.3350901	135.2851103	M2	1.357142857	1.685714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.365	70	1	1	1	19qA	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	sgMsh2	cell line
chr19	44973627	44973627	T	C	ENSMUST00000096053.4	1	ENSMUSG00000036097	missense	I/T	1081	Slf2	ENSMUST00000096053.4:c.3242T>C	ENSMUSP00000093758.3:p.Ile1081Thr	H-2-Kb	9	5	7	AYYLTYTLL	AYYLTYILL	NetMHC	38.65	71.83	1.858	331	0.257	52.197	70.367	1.348	71.83	38.65	163.4	63.7	44.06664633	41.69749833	68.90488306	62.69746764	M2	1.057142857	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.243	331	82	16	0.195121951	19qC3	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr19	3948632	3948632	A	G	ENSMUST00000162708.6	1	ENSMUSG00000036908	missense	K/R	517	Unc93b1	ENSMUST00000162708.6:c.1550A>G	ENSMUSP00000124272.1:p.Lys517Arg	H-2-Kb	9	4	8	SSLPMKARL	SSLPMKAKL	NetMHC	44.92	155.55	3.463	60	0.15	188.011	364.422	1.938	155.55	44.92	303	126.5	455.1033161	249.5226649	425.8434778	282.000579	M2	0.185714286	0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.175	60	17	3	0.176470588	19qA	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	9	13	1	VTFPHYWLF	NA	NetMHCpan	32	NA	NA	241	0.191	35.13	NA	NA	NA	109.74	NA	32	NA	35.08407252	NA	35.17628732	M2	0.342857143	0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.181	241	0	0	NA	19qA	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.760623715	sgMsh2	cell line
chr19	13781532	13781532	A	G	ENSMUST00000219412.1	NA	ENSMUSG00000048356	missense	I/V	307	Olfr1496	ENSMUST00000219412.1:c.919A>G	ENSMUSP00000151386.1:p.Ile307Val	H-2-Kb	9	11	1	VNKSHLLPL	INKSHLLPL	SMM	86.718	127.676	1.472	155	0.194	97.38	127.844	1.313	170.42	141.35	95.7	98.1	127.6762152	86.71814915	128.0117987	96.66071427	M2	0.271428571	0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	155	0	0	NA	19qA	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.840468194	sgMsh2	cell line
chr19	44973627	44973627	T	C	ENSMUST00000096053.4	1	ENSMUSG00000036097	missense	I/T	1081	Slf2	ENSMUST00000096053.4:c.3242T>C	ENSMUSP00000093758.3:p.Ile1081Thr	H-2-Kb	9	4	8	QAYYLTYTL	QAYYLTYIL	NetMHCpan	118.9	287.1	2.415	331	0.257	148.952	306.938	2.061	357.17	145.46	287.1	118.9	170.2589693	152.4438821	326.7758854	276.8534884	M2	0.328571429	0.328571429	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.243	331	82	16	0.195121951	19qC3	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	9	7	7	VVNHFFVTF	VVNHFFCDI	SMM	104.018	301.377	2.897	241	0.191	110.553	279.147	2.525	290.84	180.67	126.9	112.4	301.3769268	104.0183595	267.4545558	108.7051201	M2	0.742857143	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.181	241	0	0	NA	19qA	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.760623715	sgMsh2	cell line
chr19	13705333	13705333	A	G	ENSMUST00000216366.1	5	ENSMUSG00000051156	missense	T/A	169	Olfr1491	ENSMUST00000216366.1:c.505A>G	ENSMUSP00000149071.1:p.Thr169Ala	H-2-Kb	9	6	6	TALIFALPF	TALIFTLPF	NetMHC	239.87	221.04	0.921	288	0.247	260.671	213.815	0.82	221.04	239.87	225.8	251.5	206.5903351	269.8422814	205.7074402	286.5827198	M2	2.557142857	2.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.255	288	0	0	NA	19qA	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr19	16383254	16383254	G	A	ENSMUST00000025541.5	1	ENSMUSG00000024639	missense	V/M	314	Gnaq	ENSMUST00000025541.5:c.940G>A	ENSMUSP00000025541.5:p.Val314Met	H-2-Kb	9	5	7	FILKMFMDL	FILKMFVDL	NetMHC	268.8	623.27	2.319	174	0.126	358.268	502.216	1.402	623.27	268.8	645.4	411.6	381.1623536	362.3347605	317.8703353	354.201177	M2	0.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.144	174	337	42	0.12462908	19qA	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.6051371	sgMsh2	cell line
chr19	11302068	11302068	G	A	ENSMUST00000187467.1	5	ENSMUSG00000099398	missense	S/F	1042	Ms4a14	ENSMUST00000187467.1:c.3125C>T	ENSMUSP00000140996.1:p.Ser1042Phe	H-2-Kb	9	7	5	WSTPFWQPI	WSTPSWQPI	NetMHC	408.4	3794.49	9.291	261	0.153	481.829	3435.683	7.131	3794.49	408.4	4696.3	413.8	3076.876041	602.7122243	2595.673122	549.8573061	M2	-0.142857143	-0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.155	261	0	0	NA	19qA	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.65136285	sgMsh2	cell line
chr19	5673337	5673337	G	T	ENSMUST00000113615.8	1	ENSMUSG00000054874	missense	L/I	1277	Pcnx3	ENSMUST00000113615.8:c.3829C>A	ENSMUSP00000109245.2:p.Leu1277Ile	H-2-Kb	9	7	5	AMLFIQALL	AMLFLQALL	SMM	376.799	222.9	0.592	57	0.175	399.788	233.411	0.584	207.33	423.24	257.8	399.4	222.8999649	376.7992242	243.9214539	400.1750427	M2	2.428571429	2.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.182	57	106	19	0.179245283	19qA	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	sgMsh2	cell line
chr19	13235020	13235020	A	G	ENSMUST00000207246.3	2	ENSMUSG00000096365	missense	I/V	257	Olfr1463	ENSMUST00000207246.3:c.769A>G	ENSMUSP00000146566.1:p.Ile257Val	H-2-Kb	9	10	2	TVFMYLQPS	TIFMYLQPS	SMM	139.672	144.248	1.033	189	0.185	248.273	280.109	1.128	488.92	435.18	370	309.8	144.2480663	139.6722084	190.2172944	186.7454375	M2	0.185714286	1.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.205	189	0	0	NA	19qA	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.861479899	sgMsh2	cell line
chr19	44973627	44973627	T	C	ENSMUST00000096053.4	1	ENSMUSG00000036097	missense	I/T	1081	Slf2	ENSMUST00000096053.4:c.3242T>C	ENSMUSP00000093758.3:p.Ile1081Thr	H-2-Kb	9	8	4	LTYTLLHLV	LTYILLHLV	NetMHCpan	420.8	764.9	1.818	331	0.257	426.798	410.951	0.963	451.86	440.77	764.9	420.8	360.6699835	420.8332054	370.0411313	432.7628777	M2	1.485714286	1.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.243	331	82	16	0.195121951	19qC3	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	9	17	0	HYWLFLALV	NA	SMM	304.166	NA	NA	241	0.191	437.286	NA	NA	NA	459.38	NA	1465.1	NA	304.1655332	NA	415.1929781	M2	2.757142857	2.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.181	241	0	0	NA	19qA	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.760623715	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	9	14	0	TFPHYWLFL	NA	NetMHCpan	353	NA	NA	241	0.191	400.076	NA	NA	NA	462.8	NA	353	NA	426.6875784	NA	373.4650797	M2	0.485714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.181	241	0	0	NA	19qA	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.760623715	sgMsh2	cell line
chr18	75519813	75519813	T	C	ENSMUST00000165559.2	5	ENSMUSG00000052928	missense	K/E	458	Ctif	ENSMUST00000165559.2:c.1372A>G	ENSMUSP00000129974.1:p.Lys458Glu	H-2-Kb	9	3	9	RSFAFTAAE	RSFAFTAAK	SMM	476.552	1897.186	3.981	45	0.289	497.378	1583.55	3.184	1412.21	511.42	1327.6	1067	1897.186388	476.5516746	1754.890407	483.3369531	M2	0.971428571	1.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.267	45	6	1	0.166666667	18qE3	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr19	5982837	5982837	A	C	ENSMUST00000041827.7	1	ENSMUSG00000037451	missense	S/A	267	Slc22a20	ENSMUST00000041827.7:c.799T>G	ENSMUSP00000049473.7:p.Ser267Ala	H-2-Kb	9	6	6	VFFLYAWWL	VFFLYSWWL	SMM	111.715	68.251	0.611	29	0.241	477.142	326.92	0.685	561.53	819.31	1138.8	1653.8	68.25115418	111.7146168	92.31026548	134.9739632	M2	1.3	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.241	29	0	0	NA	19qA	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	9	16	0	PHYWLFLAL	NA	SMM	166.001	NA	NA	241	0.191	366.318	NA	NA	NA	971.99	NA	541.1	NA	166.0007308	NA	191.5358177	M2	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.181	241	0	0	NA	19qA	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.760623715	sgMsh2	cell line
chr19	6171394	6171394	T	C	ENSMUST00000045042.7	1	ENSMUSG00000039699	missense	L/P	78	Batf2	ENSMUST00000045042.7:c.233T>C	ENSMUSP00000045744.7:p.Leu78Pro	H-2-Kb	9	5	7	AGWGRTPHL	AGWGRTLHL	NetMHCpan	309.4	307.7	0.995	68	0.162	429.93	509.685	1.186	870.88	1085.26	307.7	309.4	579.5754752	482.0698829	439.7947088	377.7896015	M2	-1.071428571	-0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.184	68	0	0	NA	19qA	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.773230738	sgMsh2	cell line
chr2	24953277	24953277	T	C	ENSMUST00000028350.8	1	ENSMUSG00000026974	missense	V/A	87	Zmynd19	ENSMUST00000028350.8:c.260T>C	ENSMUSP00000028350.3:p.Val87Ala	H-2-Db	9	10	2	VAHLNAVTV	VVHLNAVTV	NetMHC	8.32	172.04	20.678	83	0.217	28.28	261.657	9.252	172.04	8.32	293.9	20.7	229.4140437	35.86080216	327.0167515	51.23538453	M2	0.942857143	1.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.219	83	106	30	0.283018868	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	0.920312672	sgMsh2	cell line
chr2	32229321	32229321	G	A	ENSMUST00000069817.14	1	ENSMUSG00000039262	missense	V/M	2180	Prrc2b	ENSMUST00000069817.14:c.6538G>A	ENSMUSP00000064892.8:p.Val2180Met	H-2-Db	9	3	9	GSAVNMGSM	GSAVNMGSV	NetMHC	204.5	593.88	2.904	49	0.102	267.138	628.521	2.353	593.88	204.5	1242.3	678.1	663.1625609	273.9176392	588.260923	260.3574444	M2	0.728571429	0.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.127	49	66	5	0.075757576	2qB	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	0.533697303	sgMsh2	cell line
chr2	31207697	31207697	A	G	ENSMUST00000056433.6	1	ENSMUSG00000000194	missense	K/R	441	Gpr107	ENSMUST00000056433.6:c.1322A>G	ENSMUSP00000056739.5:p.Lys441Arg	H-2-Db	9	4	8	KAAINLARL	KAAINLAKL	NetMHCpan	101.4	102.4	1.01	122	0.23	325.555	235.751	0.724	167.68	392.01	102.4	101.4	303.8225469	298.2771604	364.3929785	352.8336521	M2	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	122	135	42	0.311111111	2qB	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	0.9539314	sgMsh2	cell line
chr2	24687761	24687761	A	G	ENSMUST00000041342.11	1	ENSMUSG00000004113	missense	L/P	700	Cacna1b	ENSMUST00000041342.11:c.2099T>C	ENSMUSP00000037416.5:p.Leu700Pro	H-2-Db	9	4	8	TLFGNYTPL	TLFGNYTLL	NetMHCpan	113.2	549.8	4.857	78	0.038	218.505	712.435	3.26	2806.17	647.6	549.8	113.2	840.6592577	260.9876759	584.2113633	176.0232357	M2	-0.128571429	-1.27E-16	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.057	78	0	0	NA	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	0.239533435	sgMsh2	cell line
chr2	22577871	22577871	T	C	ENSMUST00000044749.13	5	ENSMUSG00000025716	missense	V/A	1317	Myo3a	ENSMUST00000044749.13:c.3950T>C	ENSMUSP00000046329.7:p.Val1317Ala	H-2-Db	9	10	2	SAVTQNAPL	SVVTQNAPL	SMMPMBEC	357.742	2283.337	6.383	120	0.275	496.921	3714.743	7.476	9108.98	745.43	4105.8	474.3	3323.686094	519.5412082	2283.336925	357.7420571	M2	0.071428571	0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.287	120	0	0	NA	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr2	31207697	31207697	A	G	ENSMUST00000056433.6	1	ENSMUSG00000000194	missense	K/R	441	Gpr107	ENSMUST00000056433.6:c.1322A>G	ENSMUSP00000056739.5:p.Lys441Arg	H-2-Kb	8	5	7	AAINLARL	AAINLAKL	NetMHC	45.63	189.95	4.163	122	0.23	104.51	266.237	2.547	189.95	45.63	211.3	91.6	351.3500341	122.9532464	321.1737185	117.4194387	M2	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	122	135	42	0.311111111	2qB	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	0.9539314	sgMsh2	cell line
chr2	67511630	67511630	A	C	ENSMUST00000028410.3	1	ENSMUSG00000027022	missense	N/T	1405	Xirp2	ENSMUST00000028410.3:c.4214A>C	ENSMUSP00000028410.3:p.Asn1405Thr	H-2-Kb	8	10	2	VTFTKTQL	VNFTKTQL	NetMHCpan	35.5	28.4	0.8	218	0.307	67.148	78.98	1.176	65.97	60.55	28.4	35.5	96.76983488	86.84403626	91.98986892	73.74625996	M2	-0.414285714	-0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.309	218	0	0	NA	2qC1.3	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr2	31207697	31207697	A	G	ENSMUST00000056433.6	1	ENSMUSG00000000194	missense	K/R	441	Gpr107	ENSMUST00000056433.6:c.1322A>G	ENSMUSP00000056739.5:p.Lys441Arg	H-2-Kb	8	7	5	INLARLRL	INLAKLRL	NetMHCpan	74.3	156.3	2.104	122	0.23	185.389	321.112	1.732	315.08	157.11	156.3	74.3	327.1447838	213.6682534	353.7854762	227.3735801	M2	0.1	0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	122	135	42	0.311111111	2qB	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	0.9539314	sgMsh2	cell line
chr2	76633559	76633559	C	G	ENSMUST00000002808.6	1	ENSMUSG00000002731	missense	G/A	253	Prkra	ENSMUST00000002808.6:c.758G>C	ENSMUSP00000002808.6:p.Gly253Ala	H-2-Kb	8	10	2	QAFNITYL	QGFNITYL	NetMHC	165.08	354.06	2.145	79	0.266	336.593	461.286	1.37	354.06	165.08	338	183.7	568.5124764	489.4856902	598.0534499	544.1767718	M2	1.057142857	1.057142857	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.268	79	142	49	0.345070423	2qC3	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr2	82992984	82992984	C	T	ENSMUST00000143764.8	5	ENSMUSG00000075249	missense	L/F	6354	Fsip2	ENSMUST00000143764.8:c.19060C>T	ENSMUSP00000120314.2:p.Leu6354Phe	H-2-Kb	8	4	8	VNSVYTNF	VNSVYTNL	NetMHCpan	178.2	10.5	0.059	188	0.053	292.717	18.485	0.063	7.87	188.48	10.5	178.2	26.4691503	430.2689433	31.60385059	396.9538331	M2	-0.4	-0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.058	188	0	0	NA	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.243735776	sgMsh2	cell line
chr2	40598457	40598457	G	A	ENSMUST00000052550.12	1	ENSMUSG00000049252	missense	P/S	4539	Lrp1b	ENSMUST00000052550.12:c.13615C>T	ENSMUSP00000054275.7:p.Pro4539Ser	H-2-Kb	8	11	1	SIYLNSDL	PIYLNSDL	SMM	136.377	2386.382	17.498	146	0.034	178.082	5374.962	30.183	8285.36	213.36	10698.8	275.4	2386.382195	136.3766443	2464.56343	142.8038776	M2	0.428571429	0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.037	146	0	0	NA	2qB	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	0.155486616	sgMsh2	cell line
chr2	43629049	43629049	A	G	ENSMUST00000028223.8	1	ENSMUSG00000026866	missense	K/E	277	Kynu	ENSMUST00000028223.8:c.829A>G	ENSMUSP00000028223.2:p.Lys277Glu	H-2-Kb	8	8	4	CSYEYLNS	CSYKYLNS	SMM	50.903	53.179	1.045	50	0.36	175.235	158.025	0.902	211.88	238.85	222.6	290.5	53.17897962	50.90260401	104.169361	111.6194813	M2	-1.057142857	-0.585714286	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.353	50	0	0	NA	2qB	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	2	1	sgMsh2	cell line
chr2	19235585	19235585	A	T	ENSMUST00000114640.8	1	ENSMUSG00000037683	missense	K/M	51	Armc3	ENSMUST00000114640.8:c.152A>T	ENSMUSP00000110287.2:p.Lys51Met	H-2-Kb	8	8	4	AIYMFALK	AIYKFALK	SMMPMBEC	38.436	51.374	1.337	83	0.217	153.22	200.446	1.308	331.59	244.96	1278.2	1058.3	69.30107956	61.48086937	51.37360001	38.43616066	M2	1.371428571	2.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.209	83	0	0	NA	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	0.878289263	sgMsh2	cell line
chr2	24687761	24687761	A	G	ENSMUST00000041342.11	1	ENSMUSG00000004113	missense	L/P	700	Cacna1b	ENSMUST00000041342.11:c.2099T>C	ENSMUSP00000037416.5:p.Leu700Pro	H-2-Kb	8	5	7	LFGNYTPL	LFGNYTLL	SMMPMBEC	165.097	454.716	2.754	78	0.038	222.376	562.888	2.531	663.17	251.67	614.4	324.9	511.3755976	193.0812048	454.715753	165.0973111	M2	-0.128571429	-0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.057	78	0	0	NA	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	0.239533435	sgMsh2	cell line
chr2	37405335	37405335	A	C	ENSMUST00000100143.9	5	ENSMUSG00000075376	missense	V/G	223	Rc3h2	ENSMUST00000100143.9:c.668T>G	ENSMUSP00000097721.3:p.Val223Gly	H-2-Kb	8	8	4	VLFGVQRL	VLFVVQRL	NetMHCpan	165.8	52.4	0.316	126	0.262	207.26	71.12	0.343	63.22	364.58	52.4	165.8	79.02054124	199.8664966	79.93555598	214.6545013	M2	0.885714286	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.269	126	54	11	0.203703704	2qB	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr2	76742229	76742229	A	G	ENSMUST00000111846.8	5	ENSMUSG00000051747	missense	F/L	24361	Ttn	ENSMUST00000111846.8:c.73081T>C	ENSMUSP00000107477.2:p.Phe24361Leu	H-2-Kb	9	3	9	IQPSFKLPL	IQPSFKLPF	NetMHC	49.33	307.19	6.227	161	0.416	201.9	473.634	2.346	307.19	49.33	410.1	85.3	537.1678354	318.5004131	805.8421878	465.8541836	M2	0.357142857	0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.421	161	0	0	NA	2qC3	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	2	1	sgMsh2	cell line
chr2	67511630	67511630	A	C	ENSMUST00000028410.3	1	ENSMUSG00000027022	missense	N/T	1405	Xirp2	ENSMUST00000028410.3:c.4214A>C	ENSMUSP00000028410.3:p.Asn1405Thr	H-2-Kb	9	10	2	VTFTKTQLL	VNFTKTQLL	NetMHCpan	35.2	22.4	0.636	218	0.307	64.993	46.326	0.713	41.94	50.35	22.4	35.2	50.71191374	79.63610307	56.26651281	82.27161071	M2	0.228571429	0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.309	218	0	0	NA	2qC1.3	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr2	24687761	24687761	A	G	ENSMUST00000041342.11	1	ENSMUSG00000004113	missense	L/P	700	Cacna1b	ENSMUST00000041342.11:c.2099T>C	ENSMUSP00000037416.5:p.Leu700Pro	H-2-Kb	9	4	8	TLFGNYTPL	TLFGNYTLL	NetMHCpan	51	85.6	1.678	78	0.038	88.814	134.728	1.517	105.68	60.07	85.6	51	193.2457716	151.7434661	163.775902	117.5574075	M2	-0.128571429	-1.27E-16	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.057	78	0	0	NA	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	0.239533435	sgMsh2	cell line
chr2	68118819	68118819	A	G	ENSMUST00000112346.2	NA	ENSMUSG00000034780	missense	S/G	293	B3galt1	ENSMUST00000112346.2:c.877A>G	ENSMUSP00000107965.2:p.Ser293Gly	H-2-Kb	9	10	2	YGLCRYRRV	YSLCRYRRV	NetMHC	124.84	39.29	0.315	220	0.232	342.339	134.347	0.392	39.29	124.84	116.2	280.8	165.6189397	475.4556362	152.4930322	403.8778168	M2	-0.614285714	-0.614285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.238	220	0	0	NA	2qC1.3	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr2	82992984	82992984	C	T	ENSMUST00000143764.8	5	ENSMUSG00000075249	missense	L/F	6354	Fsip2	ENSMUST00000143764.8:c.19060C>T	ENSMUSP00000120314.2:p.Leu6354Phe	H-2-Kb	9	4	8	VNSVYTNFL	VNSVYTNLL	NetMHCpan	124.4	111.7	0.898	188	0.053	233.7	136.115	0.582	118.02	184.84	111.7	124.4	154.2090991	282.5595563	210.0148478	349.3413547	M2	0.642857143	0.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.058	188	0	0	NA	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.243735776	sgMsh2	cell line
chr2	31207697	31207697	A	G	ENSMUST00000056433.6	1	ENSMUSG00000000194	missense	K/R	441	Gpr107	ENSMUST00000056433.6:c.1322A>G	ENSMUSP00000056739.5:p.Lys441Arg	H-2-Kb	9	7	5	INLARLRLF	INLAKLRLF	SMM	221.366	331.215	1.496	122	0.23	236.336	355.812	1.506	295.92	230.43	501.3	275	331.2150024	221.3655323	380.4083139	242.2423104	M2	1	1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	122	135	42	0.311111111	2qB	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	0.9539314	sgMsh2	cell line
chr2	82992984	82992984	C	T	ENSMUST00000143764.8	5	ENSMUSG00000075249	missense	L/F	6354	Fsip2	ENSMUST00000143764.8:c.19060C>T	ENSMUSP00000120314.2:p.Leu6354Phe	H-2-Kb	9	3	9	VVNSVYTNF	VVNSVYTNL	NetMHC	293.63	42.75	0.146	188	0.053	362.277	125.867	0.347	42.75	293.63	55.8	394.1	195.9340881	330.4532291	240.5747261	416.1500968	M2	-0.4	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.058	188	0	0	NA	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.243735776	sgMsh2	cell line
chr2	85841591	85841591	A	T	ENSMUST00000213515.1	5	ENSMUSG00000075208	missense	S/T	67	Olfr1019	ENSMUST00000213515.1:c.199T>A	ENSMUSP00000150622.1:p.Ser67Thr	H-2-Db	9	5	7	FFLCNLTFV	FFLCNLSFV	NetMHC	36.72	68.38	1.862	116	0.207	63.697	103.797	1.63	68.38	36.72	389	303.8	74.06618916	43.91571925	133.5272793	83.47760874	M2	1.842857143	1.842857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.212	116	0	0	NA	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.890896285	sgMsh2	cell line
chr2	154309532	154309532	A	G	ENSMUST00000088921.5	1	ENSMUSG00000067996	missense	M/V	58	Bpifb9b	ENSMUST00000088921.5:c.172A>G	ENSMUSP00000086311.5:p.Met58Val	H-2-Db	9	4	8	KGPVNHQVL	KGPVNHQML	NetMHC	44.56	186.29	4.181	217	0.023	369.266	677.104	1.834	186.29	44.56	191.1	95	1163.107885	733.8714626	1229.05127	643.5317817	M2	0.057142857	0.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.024	217	0	0	NA	2qH1	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	0.100856183	sgMsh2	cell line
chr2	87575759	87575759	G	T	ENSMUST00000214773.1	5	ENSMUSG00000062272	missense	S/I	225	Olfr1129	ENSMUST00000214773.1:c.674G>T	ENSMUSP00000150986.1:p.Ser225Ile	H-2-Db	9	3	9	FMLILASYI	FMLILASYS	NetMHC	66.11	5054.32	76.453	401	0.09	101.879	3095.411	30.383	5054.32	66.11	10838.6	395.6	715.5170714	93.45875687	1136.501465	110.2986	M2	2.328571429	2.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.092	401	0	0	NA	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.386615369	sgMsh2	cell line
chr2	88006632	88006632	T	G	ENSMUST00000099839.3	NA	ENSMUSG00000075141	missense	M/L	49	Olfr1160	ENSMUST00000099839.3:c.145A>C	ENSMUSP00000097427.3:p.Met49Leu	H-2-Db	9	3	9	FSIYSITLL	FSIYSITLM	NetMHC	196.44	127.02	0.647	351	0.034	334.623	267.366	0.799	127.02	196.44	241.9	253.7	292.8329887	415.5468552	336.9535219	439.1066356	M2	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.036	351	0	0	NA	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.151284275	sgMsh2	cell line
chr2	88006632	88006632	T	G	ENSMUST00000099839.3	NA	ENSMUSG00000075141	missense	M/L	49	Olfr1160	ENSMUST00000099839.3:c.145A>C	ENSMUSP00000097427.3:p.Met49Leu	H-2-Db	9	6	6	YSITLLGNI	YSITLMGNI	NetMHC	256.69	185.65	0.723	351	0.034	487.354	413.213	0.848	185.65	256.69	1299.1	1238	453.5445995	515.9647117	372.8807814	458.7435806	M2	1.714285714	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.036	351	0	0	NA	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.151284275	sgMsh2	cell line
chr2	121336461	121336461	T	G	ENSMUST00000052029.9	1	ENSMUSG00000033526	missense	S/R	870	Ppip5k1	ENSMUST00000052029.9:c.2608A>C	ENSMUSP00000057632.3:p.Ser870Arg	H-2-Db	9	11	1	RAISELNYM	SAISELNYM	NetMHCpan	138.7	63.8	0.46	89	0.236	375.561	214.339	0.571	146.47	381.66	63.8	138.7	340.1104688	520.7388744	282.2084413	369.4621898	M2	0.157142857	0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	89	21	6	0.285714286	2qE5	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	0.949729059	sgMsh2	cell line
chr2	88274180	88274180	G	T	ENSMUST00000216887.1	NA	ENSMUSG00000075132	missense	L/I	290	Olfr1173	ENSMUST00000216887.1:c.868C>A	ENSMUSP00000149617.1:p.Leu290Ile	H-2-Db	9	9	3	YSIRNKDVK	YSLRNKDVK	SMMPMBEC	141.765	164.274	1.159	229	0.166	305.089	389.992	1.278	593.51	443.6	3742.6	2477.9	186.4747356	166.5789039	164.2744417	141.7653192	M2	-1.514285714	-1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.17	229	0	0	NA	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.714397965	sgMsh2	cell line
chr2	88958862	88958862	C	A	ENSMUST00000215781.1	5	ENSMUSG00000048226	missense	S/Y	132	Olfr1212	ENSMUST00000215781.1:c.395C>A	ENSMUSP00000149781.1:p.Ser132Tyr	H-2-Db	9	11	1	YSIMNWRLC	SSIMNWRLC	SMMPMBEC	233.115	344.802	1.479	314	0.045	399.144	668.197	1.674	4965.1	2215.34	936.8	510.8	399.5949582	287.4881843	344.8021776	233.1148822	M2	0.542857143	0.542857143	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.048	314	0	0	NA	2qE1	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.201712367	sgMsh2	cell line
chr2	131274254	131274254	T	C	ENSMUST00000183349.1	3	ENSMUSG00000037514	missense	I/T	24	Pank2	ENSMUST00000183349.1:c.70T>C	ENSMUSP00000139203.1:p.Ile24Thr	H-2-Kb	8	8	4	LSRTFSHL	LSRIFSHL	NetMHC	6.68	6.6	0.988	47	0.234	22.689	20.587	0.907	6.6	6.68	16.3	22.9	26.10597994	24.5323979	24.87367755	22.47708563	M2	-0.485714286	-0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.255	47	78	10	0.128205128	2qF1	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr2	88006632	88006632	T	G	ENSMUST00000099839.3	NA	ENSMUSG00000075141	missense	M/L	49	Olfr1160	ENSMUST00000099839.3:c.145A>C	ENSMUSP00000097427.3:p.Met49Leu	H-2-Kb	8	4	8	SIYSITLL	SIYSITLM	NetMHC	23.89	82.42	3.45	351	0.034	68.167	260.849	3.827	82.42	23.89	64.5	24.2	480.5515695	119.8781411	439.2785529	112.1346934	M2	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.036	351	0	0	NA	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.151284275	sgMsh2	cell line
chr2	85786374	85786374	T	C	ENSMUST00000215945.1	5	ENSMUSG00000033850	missense	F/L	288	Olfr1015	ENSMUST00000215945.1:c.862T>C	ENSMUSP00000148957.1:p.Phe288Leu	H-2-Kb	8	4	8	INPLLNPL	INPLLNPF	NetMHC	54.38	1179.23	21.685	230	0.07	137.353	1709.61	12.447	1179.23	54.38	1406.7	150.9	2012.51905	123.8055176	2012.51905	160.228586	M2	0.171428571	0.271428571	FALSE	FALSE	FALSE	0	FALSE	2	Mutect2;Strelka2;MuSe;Vardict	4	0.076	230	0	0	NA	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.319377914	sgMsh2	cell line
chr2	132240580	132240580	A	G	ENSMUST00000110164.7	2	ENSMUSG00000027341	missense	F/S	90	Tmem230	ENSMUST00000110164.7:c.269T>C	ENSMUSP00000105793.1:p.Phe90Ser	H-2-Kb	8	11	1	SLPGFYHL	FLPGFYHL	NetMHCpan	98.2	522.1	5.317	120	0.333	164.475	459.527	2.794	694.44	114.79	522.1	98.2	387.9180607	214.1608096	396.9538331	229.4774419	M2	0.557142857	0.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.331	120	33	6	0.181818182	2qF2	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr2	85841591	85841591	A	T	ENSMUST00000213515.1	5	ENSMUSG00000075208	missense	S/T	67	Olfr1019	ENSMUST00000213515.1:c.199T>A	ENSMUSP00000150622.1:p.Ser67Thr	H-2-Kb	8	8	4	CNLTFVDL	CNLSFVDL	SMM	132.355	142.475	1.076	116	0.207	141.175	144.618	1.024	146.76	141.55	141.1	140.8	142.4754378	132.3548926	197.1242255	182.7006111	M2	0.985714286	0.985714286	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.212	116	0	0	NA	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.890896285	sgMsh2	cell line
chr2	119139420	119139420	GT	G	ENSMUST00000094695.11	1	ENSMUSG00000070730	FS	T/X	387	Rmdn3	ENSMUST00000094695.11:c.1159del	ENSMUSP00000092283.5:p.Thr387ArgfsTer46	H-2-Kb	8	37	0	YSQDFQKL	NA	SMM	227.898	NA	NA	91	0.319	263.57	NA	NA	NA	233.55	NA	302.9	NA	227.8977303	NA	293.5891489	M2	-1.228571429	-1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.334	91	20	1	0.05	2qE5	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	2	1	sgMsh2	cell line
chr2	153891986	153891986	A	C	ENSMUST00000028983.2	1	ENSMUSG00000027481	missense	K/T	416	Bpifb2	ENSMUST00000028983.2:c.1247A>C	ENSMUSP00000028983.2:p.Lys416Thr	H-2-Kb	8	6	6	STVFQTPL	STVFQKPL	NetMHCpan	96.4	342.9	3.557	48	0.417	260.907	627.482	2.405	822.31	247.82	342.9	96.4	544.1767718	273.9933359	710.7878574	387.0258739	M2	0.614285714	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.404	48	0	0	NA	2qH1	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	2	1	sgMsh2	cell line
chr2	85841428	85841428	T	C	ENSMUST00000213515.1	5	ENSMUSG00000075208	missense	D/G	121	Olfr1019	ENSMUST00000213515.1:c.362A>G	ENSMUSP00000150622.1:p.Asp121Gly	H-2-Kb	8	6	6	AAMAYGRF	AAMAYDRF	NetMHCpan	145.3	695.9	4.789	138	0.043	404.864	1349.381	3.333	1182.62	261.78	695.9	145.3	2186.452264	930.550614	1516.142424	547.948825	M2	0.3	0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.053	138	0	0	NA	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.222724071	sgMsh2	cell line
chr2	153891986	153891986	A	C	ENSMUST00000028983.2	1	ENSMUSG00000027481	missense	K/T	416	Bpifb2	ENSMUST00000028983.2:c.1247A>C	ENSMUSP00000028983.2:p.Lys416Thr	H-2-Kb	8	7	5	TVFQTPLL	TVFQKPLL	NetMHCpan	150.5	189.5	1.259	48	0.417	260.16	483.046	1.857	548.36	326.28	189.5	150.5	511.3755976	277.8049629	454.715753	242.5157786	M2	1.257142857	1.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.404	48	0	0	NA	2qH1	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	2	1	sgMsh2	cell line
chr2	87136127	87136127	T	C	ENSMUST00000152758.3	2	ENSMUSG00000075159	missense	N/D	65	Olfr1110	ENSMUST00000152758.3:c.193A>G	ENSMUSP00000149495.1:p.Asn65Asp	H-2-Kb	8	5	7	MYFFLSDL	MYFFLSNL	NetMHCpan	91.6	14.7	0.16	261	0.092	411.362	59.088	0.144	49.51	380.4	14.7	91.6	68.66572344	442.3234863	80.11982647	480.5515695	M2	1.085714286	1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.098	261	0	0	NA	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.411829415	sgMsh2	cell line
chr2	119294259	119294259	A	G	ENSMUST00000037280.4	1	ENSMUSG00000034216	missense	M/V	556	Vps18	ENSMUST00000037280.4:c.1666A>G	ENSMUSP00000036915.4:p.Met556Val	H-2-Kb	8	11	1	VVYFAVIM	MVYFAVIM	NetMHCpan	108.7	357.2	3.286	53	0.283	418.279	1034.512	2.473	1515.54	417.05	357.2	108.7	894.828896	419.5077612	1174.194387	554.2937734	M2	2.585714286	2.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.288	53	43	11	0.255813953	2qE5	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr2	90296129	90296129	A	G	ENSMUST00000214356.2	3	ENSMUSG00000080809	missense	V/A	244	Olfr1273-ps	ENSMUST00000214356.2:c.731T>C	ENSMUSP00000150797.1:p.Val244Ala	H-2-Kb	8	10	2	VAILFFGP	VVILFFGP	SMM	225.289	228.95	1.016	376	0.215	379.677	484.135	1.275	739.32	511.76	1159.7	523.3	228.9496585	225.2890066	228.9496585	247.5939338	M2	1.957142857	2.785714286	FALSE	FALSE	TRUE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	376	0	0	NA	2qE1	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.949729059	sgMsh2	cell line
chr2	88896778	88896778	G	A	ENSMUST00000214297.1	5	ENSMUSG00000075114	missense	T/I	273	Olfr1208	ENSMUST00000214297.1:c.818C>T	ENSMUSP00000149695.1:p.Thr273Ile	H-2-Kb	8	5	7	VFALFYIM	VFALFYTM	SMM	271.481	118.506	0.437	324	0.228	447.943	152.947	0.341	195.58	518.34	114.7	406.4	118.5059074	271.4813499	187.3872337	489.4856902	M2	2.328571429	2.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.217	324	0	0	NA	2qE1	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.91190799	sgMsh2	cell line
chr2	88124676	88124676	A	G	ENSMUST00000217575.2	5	ENSMUSG00000101078	missense	F/S	103	Olfr1166	ENSMUST00000217575.2:c.308T>C	ENSMUSP00000149099.1:p.Phe103Ser	H-2-Kb	8	11	1	SFFICTFV	FFFICTFV	SMM	232.135	420.475	1.811	395	0.182	479.712	1350.305	2.815	2228.83	686.69	6017.5	1323.2	420.4748265	232.1346655	471.7805149	272.7344509	M2	2.7	2.7	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.179	395	0	0	NA	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.752219033	sgMsh2	cell line
chr2	90296129	90296129	A	G	ENSMUST00000214356.2	3	ENSMUSG00000080809	missense	V/A	244	Olfr1273-ps	ENSMUST00000214356.2:c.731T>C	ENSMUSP00000150797.1:p.Val244Ala	H-2-Kb	8	11	1	AILFFGPA	VILFFGPA	SMMPMBEC	255.705	74.6	0.292	376	0.215	409.107	103.202	0.252	125.17	696.41	173	512.2	81.23440428	306.013087	74.60020141	255.7054591	M2	1.957142857	1.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	376	0	0	NA	2qE1	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.949729059	sgMsh2	cell line
chr2	88896778	88896778	G	A	ENSMUST00000214297.1	5	ENSMUSG00000075114	missense	T/I	273	Olfr1208	ENSMUST00000214297.1:c.818C>T	ENSMUSP00000149695.1:p.Thr273Ile	H-2-Kb	8	6	6	FALFYIMI	FALFYTMI	SMM	402.476	364.536	0.906	324	0.228	438.775	342.368	0.78	320.2	723.86	95.4	443.3	364.5356443	402.476011	378.2160895	434.2501729	M2	2.571428571	2.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.217	324	0	0	NA	2qE1	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.91190799	sgMsh2	cell line
chr2	88896778	88896778	G	A	ENSMUST00000214297.1	5	ENSMUSG00000075114	missense	T/I	273	Olfr1208	ENSMUST00000214297.1:c.818C>T	ENSMUSP00000149695.1:p.Thr273Ile	H-2-Kb	8	4	8	KVFALFYI	KVFALFYT	NetMHCpan	171	1887.2	11.036	324	0.228	456.025	2002.147	4.39	5435.38	889.82	1887.2	171	2117.093311	482.7696948	1405.206015	429.2793522	M2	2.657142857	2.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.217	324	0	0	NA	2qE1	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.91190799	sgMsh2	cell line
chr2	153891986	153891986	A	C	ENSMUST00000028983.2	1	ENSMUSG00000027481	missense	K/T	416	Bpifb2	ENSMUST00000028983.2:c.1247A>C	ENSMUSP00000028983.2:p.Lys416Thr	H-2-Kb	9	5	7	ISTVFQTPL	ISTVFQKPL	NetMHC	11.41	25.07	2.197	48	0.417	66.044	117.373	1.777	25.07	11.41	47.2	19.6	187.5469475	112.4889855	227.6407459	133.122051	M2	0.614285714	0.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.404	48	0	0	NA	2qH1	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	2	1	sgMsh2	cell line
chr2	132240580	132240580	A	G	ENSMUST00000110164.7	2	ENSMUSG00000027341	missense	F/S	90	Tmem230	ENSMUST00000110164.7:c.269T>C	ENSMUSP00000105793.1:p.Phe90Ser	H-2-Kb	9	10	2	VSLPGFYHL	VFLPGFYHL	NetMHC	22.77	187.13	8.218	120	0.333	93.901	246.108	2.621	187.13	22.77	200.4	30	291.8166046	157.8010905	341.3893746	169.9221522	M2	0.557142857	0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.331	120	33	6	0.181818182	2qF2	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr2	90296129	90296129	A	G	ENSMUST00000214356.2	3	ENSMUSG00000080809	missense	V/A	244	Olfr1273-ps	ENSMUST00000214356.2:c.731T>C	ENSMUSP00000150797.1:p.Val244Ala	H-2-Kb	9	10	2	VAILFFGPA	VVILFFGPA	NetMHC	27.49	37.64	1.369	376	0.215	72.942	107.929	1.48	37.64	27.49	98.3	44.2	120.2568988	106.9325688	117.5574075	101.6833861	M2	1.957142857	2.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	376	0	0	NA	2qE1	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.949729059	sgMsh2	cell line
chr2	85841428	85841428	T	C	ENSMUST00000213515.1	5	ENSMUSG00000075208	missense	D/G	121	Olfr1019	ENSMUST00000213515.1:c.362A>G	ENSMUSP00000150622.1:p.Asp121Gly	H-2-Kb	9	8	4	MAYGRFVAI	MAYDRFVAI	NetMHCpan	15.8	14.9	0.943	138	0.043	41.748	40.056	0.959	32.77	38.18	14.9	15.8	55.22172896	51.77379503	47.34237051	45.31583638	M2	1.014285714	1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.053	138	0	0	NA	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.222724071	sgMsh2	cell line
chr2	88896778	88896778	G	A	ENSMUST00000214297.1	5	ENSMUSG00000075114	missense	T/I	273	Olfr1208	ENSMUST00000214297.1:c.818C>T	ENSMUSP00000149695.1:p.Thr273Ile	H-2-Kb	9	8	4	LFYIMIAPL	LFYTMIAPL	NetMHC	43.97	45.19	1.028	324	0.228	74.683	76.424	1.023	45.19	43.97	66.7	119	88.33035991	75.70246132	86.14895227	73.66310144	M2	1.942857143	2.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.217	324	0	0	NA	2qE1	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.91190799	sgMsh2	cell line
chr2	111335694	111335694	C	A	ENSMUST00000099618.1	NA	ENSMUSG00000096554	missense	R/M	128	Olfr1282	ENSMUST00000099618.1:c.383G>T	ENSMUSP00000097213.1:p.Arg128Met	H-2-Kb	9	10	2	CMPLHYSSI	CRPLHYSSI	NetMHC	94.4	1410.95	14.947	565	0.303	136.949	1266.807	9.25	1410.95	94.4	2800.2	169.4	724.6194716	104.4984864	1122.664526	174.2809827	M2	0.085714286	0.185714286	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.31	565	0	0	NA	2qE3	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr2	87136127	87136127	T	C	ENSMUST00000152758.3	2	ENSMUSG00000075159	missense	N/D	65	Olfr1110	ENSMUST00000152758.3:c.193A>G	ENSMUSP00000149495.1:p.Asn65Asp	H-2-Kb	9	4	8	PMYFFLSDL	PMYFFLSNL	SMM	32.293	15.35	0.475	261	0.092	88.66	26.875	0.303	34.5	134.44	28.5	170.8	15.35005727	32.29311952	25.24933823	42.87952838	M2	1.085714286	1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.098	261	0	0	NA	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.411829415	sgMsh2	cell line
chr2	86160001	86160001	T	C	ENSMUST00000215624.1	NA	ENSMUSG00000075202	missense	Y/C	123	Olfr1042	ENSMUST00000215624.1:c.368A>G	ENSMUSP00000151053.1:p.Tyr123Cys	H-2-Kb	9	6	6	MAYDRCVAI	MAYDRYVAI	NetMHCpan	132.7	14.4	0.109	322	0.161	145.305	30.259	0.208	27.08	145.65	14.4	132.7	39.27443988	184.1238299	33.43874735	144.9606074	M2	0.528571429	0.528571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.162	322	0	0	NA	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.680779237	sgMsh2	cell line
chr2	87434694	87434694	T	G	ENSMUST00000215909.1	5	ENSMUSG00000050772	missense	L/R	69	Olfr1124	ENSMUST00000215909.1:c.206T>G	ENSMUSP00000150244.1:p.Leu69Arg	H-2-Kb	9	6	6	PMYFFRGNF	PMYFFLGNF	SMM	65.029	38.558	0.593	156	0.218	131.203	106.721	0.813	157.82	173.23	496.2	322.1	38.55760057	65.02943789	55.62243536	89.17641311	M2	-0.185714286	-0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.214	156	0	0	NA	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.899300967	sgMsh2	cell line
chr2	91284247	91284247	A	G	ENSMUST00000102594.10	1	ENSMUSG00000040591	missense	F/L	147	1110051M20Rik	ENSMUST00000102594.10:c.439T>C	ENSMUSP00000099654.4:p.Phe147Leu	H-2-Kb	9	8	4	QIQLYYSEF	QIQFYYSEF	SMM	177.873	191.034	1.074	161	0.205	233.567	248.13	1.062	224.46	181.21	352.1	442.3	191.0337056	177.8729877	271.8003427	285.9235978	M2	-0.542857143	-0.3	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.22	161	27	3	0.111111111	2qE1	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.924515013	sgMsh2	cell line
chr2	119139420	119139420	GT	G	ENSMUST00000094695.11	1	ENSMUSG00000070730	FS	T/X	387	Rmdn3	ENSMUST00000094695.11:c.1159del	ENSMUSP00000092283.5:p.Thr387ArgfsTer46	H-2-Kb	9	45	0	DGYIFLSAI	NA	NetMHC	187.49	NA	NA	91	0.319	309.473	NA	NA	NA	187.49	NA	212.4	NA	406.5462879	NA	510.7989549	M2	2.185714286	2.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.334	91	20	1	0.05	2qE5	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	2	1	sgMsh2	cell line
chr2	91284247	91284247	A	G	ENSMUST00000102594.10	1	ENSMUSG00000040591	missense	F/L	147	1110051M20Rik	ENSMUST00000102594.10:c.439T>C	ENSMUSP00000099654.4:p.Phe147Leu	H-2-Kb	9	9	3	IQLYYSEFL	IQFYYSEFL	NetMHCpan	192.4	29.6	0.154	161	0.205	382.31	125.453	0.328	51.33	204.72	29.6	192.4	199.5767748	559.8993973	219.4067579	608.4851727	M2	0.5	0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.22	161	27	3	0.111111111	2qE1	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.924515013	sgMsh2	cell line
chr2	88896778	88896778	G	A	ENSMUST00000214297.1	5	ENSMUSG00000075114	missense	T/I	273	Olfr1208	ENSMUST00000214297.1:c.818C>T	ENSMUSP00000149695.1:p.Thr273Ile	H-2-Kb	9	5	7	VFALFYIMI	VFALFYTMI	SMM	71.468	67.625	0.946	324	0.228	155.293	91.289	0.588	95.23	214.59	176.2	1002.7	67.62542383	71.46773197	87.34740358	95.99530659	M2	2.571428571	2.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.217	324	0	0	NA	2qE1	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.91190799	sgMsh2	cell line
chr2	91284247	91284247	A	G	ENSMUST00000102594.10	1	ENSMUSG00000040591	missense	F/L	147	1110051M20Rik	ENSMUST00000102594.10:c.439T>C	ENSMUSP00000099654.4:p.Phe147Leu	H-2-Kb	9	3	9	FLFAFQIQL	FLFAFQIQF	NetMHCpan	235.9	1129.7	4.789	161	0.205	317.333	742.822	2.341	735.56	268.86	1129.7	235.9	750.0841699	444.7438999	632.7760017	365.8053055	M2	1.242857143	2.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.22	161	27	3	0.111111111	2qE1	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.924515013	sgMsh2	cell line
chr2	117177703	117177703	A	G	ENSMUST00000028829.12	1	ENSMUSG00000027351	missense	I/M	363	Spred1	ENSMUST00000028829.12:c.1089A>G	ENSMUSP00000028829.6:p.Ile363Met	H-2-Kb	9	10	2	CMYQVSCML	CIYQVSCML	SMM	228.618	511.811	2.239	158	0.399	331.205	563.356	1.701	483.81	295.31	614.9	367.1	511.811453	228.6177783	851.6281337	411.386466	M2	0.971428571	0.971428571	TRUE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.401	158	155	64	0.412903226	2qE5	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	2	1	sgMsh2	cell line
chr2	111379635	111379635	T	C	ENSMUST00000062407.5	5	ENSMUSG00000108931	missense	F/L	212	Olfr1284	ENSMUST00000062407.5:c.634T>C	ENSMUSP00000052153.4:p.Phe212Leu	H-2-Kb	9	5	7	MTLGTFLLL	MTLGTFFLL	NetMHCpan	246.9	192.4	0.779	290	0.324	312.574	264.729	0.847	258.37	322.38	192.4	246.9	271.0878168	302.7680195	408.5545015	416.1500968	M2	2.414285714	2.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.329	290	0	0	NA	2qE3	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr2	153231550	153231550	G	A	ENSMUST00000109795.1	1	ENSMUSG00000051413	missense	P/L	477	Plagl2	ENSMUST00000109795.1:c.1430C>T	ENSMUSP00000105419.1:p.Pro477Leu	H-2-Kb	9	3	9	FGPLHSLPL	FGPLHSLPP	NetMHCpan	236.3	12851.3	54.386	54	0.056	455.438	9265.007	20.343	21009.38	335.29	12851.3	236.3	2655.278017	575.5857057	5678.714044	771.3473645	M2	0.6	0.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.08	54	33	1	0.03030303	2qH1	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	0.336187278	sgMsh2	cell line
chr2	85786374	85786374	T	C	ENSMUST00000215945.1	5	ENSMUSG00000033850	missense	F/L	288	Olfr1015	ENSMUST00000215945.1:c.862T>C	ENSMUSP00000148957.1:p.Phe288Leu	H-2-Kb	9	3	9	IINPLLNPL	IINPLLNPF	NetMHCpan	438.7	1653.4	3.769	230	0.07	476.268	1172.73	2.462	1420.23	481.44	1653.4	438.7	794.5294511	471.0966327	925.2306262	534.872168	M2	0.171428571	1.142857143	FALSE	FALSE	FALSE	0	FALSE	2	Mutect2;Strelka2;MuSe;Vardict	4	0.076	230	0	0	NA	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.319377914	sgMsh2	cell line
chr2	87656102	87656102	A	AT	ENSMUST00000135875.3	5	ENSMUSG00000111747	FS	M/NX	273	Olfr1134	ENSMUST00000135875.3:c.817dup	ENSMUSP00000150837.1:p.Met273AsnfsTer23	H-2-Kb	9	20	0	DSYVKPTYL	NA	SMM	254.748	NA	NA	288	0.045	435.96	NA	NA	NA	486.22	NA	545.4	NA	254.7475407	NA	385.7003207	M2	-0.114285714	-0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.046	288	0	0	NA	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.193307685	sgMsh2	cell line
chr2	88896778	88896778	G	A	ENSMUST00000214297.1	5	ENSMUSG00000075114	missense	T/I	273	Olfr1208	ENSMUST00000214297.1:c.818C>T	ENSMUSP00000149695.1:p.Thr273Ile	H-2-Kb	9	4	8	KVFALFYIM	KVFALFYTM	NetMHCpan	145.5	48.3	0.332	324	0.228	301.242	205.981	0.684	183.87	502.81	48.3	145.5	228.091972	254.7475407	294.6117067	347.7362769	M2	2.328571429	2.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.217	324	0	0	NA	2qE1	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.91190799	sgMsh2	cell line
chr2	158768178	158768178	C	T	ENSMUST00000029183.2	1	ENSMUSG00000027654	missense	P/L	22	Fam83d	ENSMUST00000029183.2:c.65C>T	ENSMUSP00000029183.2:p.Pro22Leu	H-2-Db	9	8	4	CGPLNPTEL	CGPPNPTEL	NetMHC	65.56	425.32	6.487	28	0.357	216.905	644.766	2.973	425.32	65.56	306.4	93.7	864.2114181	340.1104688	1154.968129	410.7428385	M2	-0.471428571	-0.214285714	TRUE	FALSE	FALSE	1	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.379	28	7	2	0.285714286	2qH1	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	2	1	sgMsh2	cell line
chr3	100065527	100065527	C	T	ENSMUST00000164539.1	5	ENSMUSG00000027867	missense	H/Y	1352	Spag17	ENSMUST00000164539.1:c.4054C>T	ENSMUSP00000134066.1:p.His1352Tyr	H-2-Db	9	8	4	TSPYNGDLV	TSPHNGDLV	NetMHC	93.78	117.07	1.248	134	0.246	273.366	321.356	1.176	117.07	93.78	274.1	166	393.2058767	380.7325434	368.6124504	395.885869	M2	-0.328571429	-0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.254	134	0	0	NA	3qF2.2	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr2	180583499	180583499	A	G	ENSMUST00000029085.8	1	ENSMUSG00000027569	missense	T/A	83	Mrgbp	ENSMUST00000029085.8:c.247A>G	ENSMUSP00000029085.8:p.Thr83Ala	H-2-Db	9	10	2	SAMYDMQAL	STMYDMQAL	NetMHCpan	338.9	3104.4	9.16	58	0.259	412.293	3121.081	7.57	4556.07	341.95	3104.4	338.9	3137.762006	482.636319	2975.568825	520.6789256	M2	0.157142857	0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.276	58	90	25	0.277777778	2qH4	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr3	80860236	80860236	AT	A	ENSMUST00000029654.14	1	ENSMUSG00000028020	FS	I/X	226	Glrb	ENSMUST00000029654.14:c.676del	ENSMUSP00000029654.8:p.Ile226LeufsTer37	H-2-Db	9	20	0	RRISNMATV	NA	SMMPMBEC	200.249	NA	NA	81	0.321	384.587	NA	NA	NA	531.15	NA	1363	NA	238.0235894	NA	200.2488359	M2	1.057142857	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.303	81	2	0	0	3qE3	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr2	180714861	180714861	A	G	ENSMUST00000078687.5	1	ENSMUSG00000027573	missense	N/S	97	Gid8	ENSMUST00000078687.5:c.290A>G	ENSMUSP00000077753.5:p.Asn97Ser	H-2-Kb	8	11	1	SRYLYFHL	NRYLYFHL	NetMHC	8.14	142.06	17.452	83	0.072	15.146	118.423	7.819	142.06	8.14	235.5	34.2	94.78508415	14.91900983	87.24489012	15.37234066	M2	0.014285714	0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.089	83	92	12	0.130434783	2qH4	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	0.374008346	sgMsh2	cell line
chr3	96643594	96643594	A	G	ENSMUST00000118557.7	1	ENSMUSG00000028102	missense	I/V	132	Pex11b	ENSMUST00000118557.7:c.394A>G	ENSMUSP00000113365.1:p.Ile132Val	H-2-Kb	8	4	8	RYYLFSLV	RYYLFSLI	NetMHC	32.09	57.84	1.802	150	0.22	74.302	110.092	1.482	57.84	32.09	58.1	52.5	174.4777291	96.10367602	162.0839455	102.2680559	M2	1.6	1.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	150	40	14	0.35	3qF2.1	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.840468194	sgMsh2	cell line
chr2	180583499	180583499	A	G	ENSMUST00000029085.8	1	ENSMUSG00000027569	missense	T/A	83	Mrgbp	ENSMUST00000029085.8:c.247A>G	ENSMUSP00000029085.8:p.Thr83Ala	H-2-Kb	8	11	1	AMYDMQAL	TMYDMQAL	NetMHCpan	73.9	56.7	0.767	58	0.259	127.758	106.842	0.836	70.22	74.49	56.7	73.9	143.4630303	181.0256018	185.6692572	236.4503711	M2	0.157142857	0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.276	58	90	25	0.277777778	2qH4	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr3	35806800	35806800	T	G	ENSMUST00000029257.14	1	ENSMUSG00000037400	missense	F/L	345	Atp11b	ENSMUST00000029257.14:c.1035T>G	ENSMUSP00000029257.8:p.Phe345Leu	H-2-Kb	8	5	7	ISDFLALL	ISDFLAFL	NetMHCpan	60.7	67.1	1.105	35	0.314	109.905	90.01	0.819	115.83	88.97	67.1	60.7	88.66250554	133.5795574	91.35661511	130.8398387	M2	1.671428571	1.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.323	35	63	14	0.222222222	3qB	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr3	28794409	28794409	G	A	ENSMUST00000060500.8	1	ENSMUSG00000050192	missense	C/Y	139	Eif5a2	ENSMUST00000060500.8:c.416G>A	ENSMUSP00000050289.7:p.Cys139Tyr	H-2-Kb	8	7	5	VSVMYAMS	VSVMCAMS	SMM	72.734	814.217	11.194	228	0.189	100.979	2855.808	28.281	5114.17	120.91	4897.4	389.8	814.2166892	72.73442335	792.027024	81.04757034	M2	0.985714286	1.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.184	228	2	1	0.5	3qA3	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.773230738	sgMsh2	cell line
chr3	88449737	88449737	A	G	ENSMUST00000029700.11	1	ENSMUSG00000028064	missense	L/P	309	Sema4a	ENSMUST00000029700.11:c.926T>C	ENSMUSP00000029700.5:p.Leu309Pro	H-2-Kb	8	5	7	IIRHAVPL	IIRHAVLL	SMM	169.332	448.477	2.649	62	0.306	247.434	538.144	2.175	1021.35	349.03	569.6	310.9	448.476819	169.3323751	506.6872779	183.9670312	M2	0.714285714	0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.281	62	15	1	0.066666667	3qF1	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr2	158495606	158495606	C	A	ENSMUST00000109485.8	1	ENSMUSG00000027652	missense	L/I	1496	Ralgapb	ENSMUST00000109485.8:c.4486C>A	ENSMUSP00000105111.2:p.Leu1496Ile	H-2-Kb	8	10	2	AIFQEVGL	ALFQEVGL	SMMPMBEC	137.006	468.533	3.42	106	0.302	277.086	992.844	3.583	2896.55	412.65	1197.3	363.3	788.3879904	190.8710225	468.5328006	137.0061303	M2	1.128571429	1.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.299	106	85	27	0.317647059	2qH1	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr3	90190923	90190923	C	T	ENSMUST00000029548.8	5	ENSMUSG00000027939	missense	S/L	1394	Nup210l	ENSMUST00000029548.8:c.4181C>T	ENSMUSP00000029548.4:p.Ser1394Leu	H-2-Kb	8	8	4	RTLLAFPL	RTLSAFPL	NetMHCpan	184	237.9	1.293	124	0.282	202.884	249.781	1.231	490.66	429.13	237.9	184	235.9065504	193.0812048	261.6616044	212.686537	M2	1.957142857	1.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.294	124	0	0	NA	3qF1	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr3	68927791	68927791	A	G	ENSMUST00000107812.7	5	ENSMUSG00000027778	missense	I/T	439	Ift80	ENSMUST00000107812.7:c.1316T>C	ENSMUSP00000103442.1:p.Ile439Thr	H-2-Kb	8	11	1	TIFLFEAS	IIFLFEAS	SMM	114.483	40.902	0.357	81	0.173	496.639	214.122	0.431	378.83	1363.31	368.3	827.8	40.90157201	114.482736	59.94321055	165.4778997	M2	1.628571429	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.188	81	26	4	0.153846154	3qE1	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.790040102	sgMsh2	cell line
chr3	89266743	89266743	T	G	ENSMUST00000107462.7	3	ENSMUSG00000042737	missense	L/V	4	Dpm3	ENSMUST00000107462.7:c.10T>G	ENSMUSP00000103086.1:p.Leu4Val	H-2-Kb	8	4	1	VTQWLWGL	LTQWLWGL	SMM	283.622	1434.63	5.058	62	0.355	404.513	1559.675	3.856	6651.54	1488.78	1453.1	408.4	1434.630303	283.6220554	1666.249377	400.6268017	M2	0.171428571	0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.315	62	93	14	0.150537634	3qF1	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr3	83068264	83068264	A	G	ENSMUST00000150268.7	1	ENSMUSG00000027998	missense	I/M	280	Plrg1	ENSMUST00000150268.7:c.840A>G	ENSMUSP00000114968.1:p.Ile280Met	H-2-Kb	9	10	2	VMRHYHGHL	VIRHYHGHL	NetMHC	14.65	14.22	0.971	169	0.219	43.845	90.175	2.057	14.22	14.65	92.6	69.1	101.4168226	45.30123063	87.75058087	42.38869047	M2	-1.714285714	-0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.236	169	117	28	0.239316239	3qE3	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.991752469	sgMsh2	cell line
chr2	180714861	180714861	A	G	ENSMUST00000078687.5	1	ENSMUSG00000027573	missense	N/S	97	Gid8	ENSMUST00000078687.5:c.290A>G	ENSMUSP00000077753.5:p.Asn97Ser	H-2-Kb	9	10	2	TSRYLYFHL	TNRYLYFHL	NetMHC	31.73	61.26	1.931	83	0.072	64.842	81.222	1.253	61.26	31.73	45.4	34.6	101.1835704	95.08455975	115.9444594	104.2917608	M2	0.014285714	0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.089	83	92	12	0.130434783	2qH4	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	0.374008346	sgMsh2	cell line
chr2	172454295	172454295	T	C	ENSMUST00000099060.1	1	ENSMUSG00000074569	missense	H/R	203	Gcnt7	ENSMUST00000099060.1:c.608A>G	ENSMUSP00000096659.1:p.His203Arg	H-2-Kb	9	8	4	FQWRYVMNL	FQWHYVMNL	NetMHC	44.73	91.86	2.054	99	0.303	378.766	352.119	0.93	91.86	44.73	121.8	74.8	680.9418088	764.0292757	582.4383998	682.7315929	M2	-0.042857143	-0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.317	99	1	0	0	2qH3	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr2	180583499	180583499	A	G	ENSMUST00000029085.8	1	ENSMUSG00000027569	missense	T/A	83	Mrgbp	ENSMUST00000029085.8:c.247A>G	ENSMUSP00000029085.8:p.Thr83Ala	H-2-Kb	9	4	8	VIWDHLSAM	VIWDHLSTM	NetMHCpan	73.8	57.5	0.779	58	0.259	77.793	86.56	1.113	88.57	75.95	57.5	73.8	84.54929682	79.63610307	91.88613834	85.35913393	M2	-0.128571429	0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.276	58	90	25	0.277777778	2qH4	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr3	90269041	90269041	T	G	ENSMUST00000098914.9	1	ENSMUSG00000042404	missense	S/A	243	Dennd4b	ENSMUST00000098914.9:c.727T>G	ENSMUSP00000096514.3:p.Ser243Ala	H-2-Kb	9	11	1	AVPVFCLPM	SVPVFCLPM	NetMHCpan	96	50.2	0.523	52	0.327	191.94	116.108	0.605	41.19	101.97	50.2	96	182.0161819	281.9096874	271.1752193	370.8941642	M2	1.714285714	2.528571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.339	52	3	1	0.333333333	3qF1	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	2	1	sgMsh2	cell line
chr3	28663993	28663993	A	G	ENSMUST00000160307.8	1	ENSMUSG00000027692	missense	I/M	1208	Tnik	ENSMUST00000160307.8:c.3624A>G	ENSMUSP00000125081.2:p.Ile1208Met	H-2-Kb	9	10	2	VMFGSHTGF	VIFGSHTGF	SMM	83.774	187.547	2.239	173	0.035	94.142	191.273	2.032	195	112.31	151.6	89.6	187.5469475	83.77414421	204.2913602	98.68473972	M2	0.014285714	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.038	173	0	0	NA	3qA3	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.159688957	sgMsh2	cell line
chr3	35806800	35806800	T	G	ENSMUST00000029257.14	1	ENSMUSG00000037400	missense	F/L	345	Atp11b	ENSMUST00000029257.14:c.1035T>G	ENSMUSP00000029257.8:p.Phe345Leu	H-2-Kb	9	4	8	FISDFLALL	FISDFLAFL	NetMHC	173.52	338.37	1.95	35	0.314	328.18	492.209	1.5	338.37	173.52	338.6	303.9	645.8177839	352.4601324	708.3534281	425.8434778	M2	1.671428571	1.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.323	35	63	14	0.222222222	3qB	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr3	68927791	68927791	A	G	ENSMUST00000107812.7	5	ENSMUSG00000027778	missense	I/T	439	Ift80	ENSMUST00000107812.7:c.1316T>C	ENSMUSP00000103442.1:p.Ile439Thr	H-2-Kb	9	11	1	TIFLFEAST	IIFLFEAST	NetMHC	181.4	78.59	0.433	81	0.173	236.705	140.504	0.594	78.59	181.4	219.4	418.7	139.6722084	239.3922023	141.3350901	234.0183969	M2	0.885714286	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.188	81	26	4	0.153846154	3qE1	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.790040102	sgMsh2	cell line
chr3	59743796	59743796	G	T	ENSMUST00000168156.2	5	ENSMUSG00000090527	missense	G/V	113	Aadacl2fm2	ENSMUST00000168156.2:c.338G>T	ENSMUSP00000128877.1:p.Gly113Val	H-2-Kb	9	5	7	VIFIHGVAF	VIFIHGGAF	SMMPMBEC	132.816	147.656	1.112	103	0.049	173.935	174.365	1.002	172.53	184.9	176.2	221	180.3474475	162.970876	147.6556263	132.8158787	M2	1.785714286	2.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.061	103	0	0	NA	3qD	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.256342799	sgMsh2	cell line
chr3	80860236	80860236	AT	A	ENSMUST00000029654.14	1	ENSMUSG00000028020	FS	I/X	226	Glrb	ENSMUST00000029654.14:c.676del	ENSMUSP00000029654.8:p.Ile226LeufsTer37	H-2-Kb	9	6	6	VQLEKLLYL	VQLEKIALP	NetMHC	204.77	13999.81	68.368	81	0.321	281.513	8030.813	28.527	13999.81	204.77	16761.3	288.8	1256.348137	274.2268658	2061.816449	309.2074862	M2	0.928571429	0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.303	81	2	0	0	3qE3	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr3	95008482	95008482	T	C	ENSMUST00000019482.7	1	ENSMUSG00000019338	missense	K/R	993	Zfp687	ENSMUST00000019482.7:c.2978A>G	ENSMUSP00000019482.1:p.Lys993Arg	H-2-Kb	9	8	4	SVKRFPCRL	SVKKFPCRL	NetMHCpan	181.6	255.5	1.407	58	0.31	436.752	462.473	1.059	295.28	204.99	255.5	181.6	629.6656471	668.5132201	679.5947262	729.8775406	M2	-0.771428571	-0.185714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.309	58	50	7	0.14	3qF2.1	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr3	96643594	96643594	A	G	ENSMUST00000118557.7	1	ENSMUSG00000028102	missense	I/V	132	Pex11b	ENSMUST00000118557.7:c.394A>G	ENSMUSP00000113365.1:p.Ile132Val	H-2-Kb	9	3	9	FRYYLFSLV	FRYYLFSLI	SMM	194.585	214.837	1.104	150	0.22	261.413	302.7	1.158	325.34	251.65	707.7	859.5	214.8374555	194.5852873	280.0593007	271.1752193	M2	1.6	1.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	150	40	14	0.35	3qF2.1	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.840468194	sgMsh2	cell line
chr3	90388429	90388429	T	C	ENSMUST00000029541.11	1	ENSMUSG00000027932	missense	Y/C	296	Slc27a3	ENSMUST00000029541.11:c.887A>G	ENSMUSP00000029541.5:p.Tyr296Cys	H-2-Kb	9	8	4	QGFCHLCGV	QGFYHLCGV	NetMHC	342.9	186.67	0.544	112	0.33	465.899	260.475	0.559	186.67	342.9	177.6	469.3	334.2796971	462.4981501	485.5679351	609.8878759	M2	1.742857143	1.742857143	TRUE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.338	112	3	1	0.333333333	3qF1	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	2	1	sgMsh2	cell line
chr3	96643594	96643594	A	G	ENSMUST00000118557.7	1	ENSMUSG00000028102	missense	I/V	132	Pex11b	ENSMUST00000118557.7:c.394A>G	ENSMUSP00000113365.1:p.Ile132Val	H-2-Kb	9	4	8	RYYLFSLVM	RYYLFSLIM	SMM	162.596	136.808	0.841	150	0.22	253.306	275.956	1.089	409.63	453.24	300	261	136.8075294	162.5960534	251.9126636	245.6122367	M2	2.057142857	2.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	150	40	14	0.35	3qF2.1	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.840468194	sgMsh2	cell line
chr4	62386110	62386110	A	G	ENSMUST00000084526.11	1	ENSMUSG00000066150	missense	D/G	56	Slc31a1	ENSMUST00000084526.11:c.167A>G	ENSMUSP00000081574.5:p.Asp56Gly	H-2-Db	9	10	2	FGFKNVNLL	FDFKNVNLL	NetMHCpan	27.7	1584.9	57.217	134	0.052	180.375	1969.121	10.917	3796.63	61.82	1584.9	27.7	2165.808232	403.2923648	1772.433705	298.9303427	M2	0.528571429	0.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.058	134	137	5	0.03649635	4qB3	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	0.243735776	sgMsh2	cell line
chr4	45307923	45307923	CT	C	ENSMUST00000044673.8	1	ENSMUSG00000035601	FS	L/X	203	Trmt10b	ENSMUST00000044673.8:c.612del	ENSMUSP00000041052.2:p.Pro205LeufsTer8	H-2-Db	9	9	5	FSLFLWKPL	FSLFPLETL	SMM	212.628	545.281	2.564	190	0.363	281.074	540.89	1.924	345.62	310.63	884.2	463.6	545.2805415	212.6277776	536.5003381	251.518538	M2	1.114285714	1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.372	190	45	3	0.066666667	4qB1	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr3	155137385	155137385	AT	A	ENSMUST00000194376.1	1	ENSMUSG00000028182	FS	N/X	298	Lrriq3	ENSMUST00000194376.1:c.897del	ENSMUSP00000142127.1:p.His300ThrfsTer32	H-2-Db	9	7	7	KLWVNFTEV	NA	SMMPMBEC	272.001	NA	NA	178	0.382	443.324	NA	NA	NA	666.64	NA	596.5	NA	290.1482797	NA	272.0006864	M2	0.371428571	0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.37	178	0	0	NA	3qH4	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	2	1	sgMsh2	cell line
chr4	34575043	34575043	A	G	ENSMUST00000048706.9	1	ENSMUSG00000040044	missense	Y/H	615	Orc3	ENSMUST00000048706.9:c.1843T>C	ENSMUSP00000048319.3:p.Tyr615His	H-2-Db	10	4	8	TALNNPYHYL	TALNNPYYYL	NetMHC	25.9	21.53	0.831	57	0.386	397.274	368.079	0.927	21.53	25.9	32	34.8	869.4607871	920.9795777	704.1578092	759.7487601	M2	-1.514285714	-0.714285714	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.39	57	76	30	0.394736842	4qA5	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr3	105005546	105005546	C	A	ENSMUST00000077548.11	1	ENSMUSG00000062127	missense	A/S	341	Cttnbp2nl	ENSMUST00000077548.11:c.1021G>T	ENSMUSP00000076751.5:p.Ala341Ser	H-2-Kb	8	11	1	SAYSYAKA	AAYSYAKA	NetMHC	11.09	24.13	2.176	101	0.327	44.921	75.024	1.67	24.13	11.09	53.5	32.2	129.0446488	68.82401428	96.54727043	57.64212727	M2	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.349	101	100	24	0.24	3qF2.2	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	2	1	sgMsh2	cell line
chr3	108624645	108624645	A	G	ENSMUST00000051145.14	1	ENSMUSG00000040389	missense	Q/R	449	Wdr47	ENSMUST00000051145.14:c.1346A>G	ENSMUSP00000057482.8:p.Gln449Arg	H-2-Kb	8	11	1	RMYQQMLL	QMYQQMLL	NetMHC	67.4	94.29	1.399	103	0.194	121.812	213.148	1.75	94.29	67.4	182.1	93.4	244.1968177	150.2242346	524.4933667	251.0383085	M2	0.442857143	0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.205	103	12	2	0.166666667	3qF3	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.861479899	sgMsh2	cell line
chr3	105978389	105978389	T	G	ENSMUST00000000573.8	1	ENSMUSG00000074340	missense	L/R	200	Ovgp1	ENSMUST00000000573.8:c.599T>G	ENSMUSP00000000573.2:p.Leu200Arg	H-2-Kb	8	5	7	TSYDALRL	TSYDALLL	NetMHCpan	51.2	92.7	1.811	98	0.214	65.195	129.261	1.983	119.93	68.34	92.7	51.2	138.5925865	62.04974485	172.480499	72.90209351	M2	-0.1	-0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.224	98	3	1	0.333333333	3qF2.2	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.941324377	sgMsh2	cell line
chr4	45307923	45307923	CT	C	ENSMUST00000044673.8	1	ENSMUSG00000035601	FS	L/X	203	Trmt10b	ENSMUST00000044673.8:c.612del	ENSMUSP00000041052.2:p.Pro205LeufsTer8	H-2-Kb	8	10	4	SLFLWKPL	SLFPLETL	NetMHCpan	45.9	278.7	6.072	190	0.363	65.889	861.472	13.075	1564.85	78.53	278.7	45.9	803.0452175	78.47656766	919.8986892	53.30156983	M2	1.114285714	1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.372	190	45	3	0.066666667	4qB1	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr3	108393194	108393194	A	G	ENSMUST00000090558.9	1	ENSMUSG00000068740	missense	L/P	2850	Celsr2	ENSMUST00000090558.9:c.8549T>C	ENSMUSP00000088046.3:p.Leu2850Pro	H-2-Kb	8	8	4	SSLPRLPL	SSLLRLPL	NetMHCpan	150	78.5	0.523	24	0.375	229.897	117.902	0.513	57.65	157.98	78.5	150	158.3944645	301.8144301	157.3040847	361.1935614	M2	0.414285714	0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.416	24	4	1	0.25	3qF3	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	2	1	sgMsh2	cell line
chr4	4058878	4058878	A	G	ENSMUST00000108383.1	1	ENSMUSG00000071019	missense	L/P	236	Sdr16c6	ENSMUST00000108383.1:c.707T>C	ENSMUSP00000104020.1:p.Leu236Pro	H-2-Kb	8	5	7	CTTKYPPL	CTTKYPLL	SMM	145.459	385.248	2.649	130	0.269	173.345	480.172	2.77	600.95	166.39	368.7	180.3	385.2476516	145.4587999	575.0955406	208.8045702	M2	-0.857142857	-0.857142857	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.279	130	0	0	NA	4qA1	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr3	146584619	146584619	A	C	ENSMUST00000200633.1	1	ENSMUSG00000028185	missense	L/R	199	Dnase2b	ENSMUST00000200633.1:c.596T>G	ENSMUSP00000142872.1:p.Leu199Arg	H-2-Kb	8	5	7	STFHWKRI	STFHWKLI	SMMPMBEC	144.457	341.775	2.366	84	0.19	192.819	354.532	1.839	367.29	243.23	186.2	161.9	499.7352678	223.738128	341.7747702	144.4574685	M2	-0.842857143	-0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.188	84	0	0	NA	3qH2	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.790040102	sgMsh2	cell line
chr4	20064005	20064005	A	C	ENSMUST00000098242.3	1	ENSMUSG00000073987	missense	K/T	234	Ggh	ENSMUST00000098242.3:c.701A>C	ENSMUSP00000095843.3:p.Lys234Thr	H-2-Kb	8	10	2	FTYPVYAV	FKYPVYAV	SMM	232.135	1272.741	5.483	105	0.333	311.21	3820.621	12.277	5414.14	319.82	5562.8	302.6	1272.740898	232.1346655	2227.101447	387.9180607	M2	0.757142857	0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.362	105	159	39	0.245283019	4qA3	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr3	107311516	107311516	C	CT	ENSMUST00000029502.13	1	ENSMUSG00000027896	FS	L/LX	478	Slc16a4	ENSMUST00000029502.13:c.1440dup	ENSMUSP00000029502.7:p.Val481CysfsTer5	H-2-Kb	8	9	6	VSLFFCTT	VSLFFVPL	NetMHCpan	99	3.7	0.037	119	0.118	150.102	2.995	0.02	3.56	384.31	3.7	99	2.252890066	166.6249377	2.430748352	133.5795574	M2	1.385714286	2.085714286	FALSE	FALSE	FALSE	1	FALSE	0	Strelka2;Vardict	2	0.1176	119	5	0	0	3qF2.3	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.494195298	sgMsh2	cell line
chr4	62386110	62386110	A	G	ENSMUST00000084526.11	1	ENSMUSG00000066150	missense	D/G	56	Slc31a1	ENSMUST00000084526.11:c.167A>G	ENSMUSP00000081574.5:p.Asp56Gly	H-2-Kb	8	8	4	FYFGFKNV	FYFDFKNV	SMMPMBEC	243.075	206.414	0.849	134	0.052	291.092	251.882	0.865	297.35	396.23	339	332.3	196.6708524	249.8848923	206.414404	243.0748352	M2	0.1	0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.058	134	137	5	0.03649635	4qB3	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	0.243735776	sgMsh2	cell line
chr4	62386110	62386110	A	G	ENSMUST00000084526.11	1	ENSMUSG00000066150	missense	D/G	56	Slc31a1	ENSMUST00000084526.11:c.167A>G	ENSMUSP00000081574.5:p.Asp56Gly	H-2-Kb	8	10	2	FGFKNVNL	FDFKNVNL	NetMHCpan	135.4	3679.3	27.174	134	0.052	166.901	2202.486	13.196	7417.77	403.51	3679.3	135.4	725.6713881	176.4980859	642.3030732	157.3040847	M2	-0.071428571	-0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.058	134	137	5	0.03649635	4qB3	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	0.243735776	sgMsh2	cell line
chr4	34806979	34806979	CT	C	ENSMUST00000047950.5	1	ENSMUSG00000039967	FS	S/X	2027	Zfp292	ENSMUST00000047950.5:c.6079del	ENSMUSP00000037233.5:p.Ser2027ValfsTer26	H-2-Kb	8	17	0	VLHSLSHL	NA	NetMHCpan	193.4	NA	NA	82	0.305	398.961	NA	NA	NA	443.32	NA	193.4	NA	444.3651588	NA	354.6010359	M2	0.485714286	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.328	82	75	20	0.266666667	4qA5	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr4	22390800	22390800	T	C	ENSMUST00000039234.9	1	ENSMUSG00000040410	missense	Y/H	328	Fbxl4	ENSMUST00000039234.9:c.982T>C	ENSMUSP00000042219.3:p.Tyr328His	H-2-Kb	8	8	4	LQPHWARL	LQPYWARL	SMMPMBEC	297.673	314.586	1.057	30	0.2	471.022	266.443	0.566	169.3	539.6	218.3	520.6	424.3654321	421.444121	314.5864409	297.6733808	M2	-1.157142857	-1.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.219	30	39	8	0.205128205	4qA3	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	0.920312672	sgMsh2	cell line
chr3	122014355	122014355	C	A	ENSMUST00000037958.13	1	ENSMUSG00000039831	missense	P/T	1061	Arhgap29	ENSMUST00000037958.13:c.3181C>A	ENSMUSP00000044624.7:p.Pro1061Thr	H-2-Kb	8	9	3	KNTAFEGL	KNPAFEGL	SMM	324.893	206.89	0.637	199	0.236	433.195	218.845	0.505	136.38	546.75	230.8	443	206.8902384	324.8927349	275.2580317	423.3894187	M2	0.042857143	0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.231	199	18	5	0.277777778	3qG1	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.970740764	sgMsh2	cell line
chr4	53083890	53083890	A	G	ENSMUST00000030010.3	1	ENSMUSG00000015243	missense	W/R	648	Abca1	ENSMUST00000030010.3:c.1942T>C	ENSMUSP00000030010.3:p.Trp648Arg	H-2-Kb	8	11	1	RIYSVAVI	WIYSVAVI	SMM	334.765	451.586	1.349	53	0.264	400.859	795.858	1.985	1140.13	619.27	1407.1	446.3	451.5855118	334.7649647	409.0157201	355.4184757	M2	2.442857143	2.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	53	5	1	0.2	4qB2	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr4	34575043	34575043	A	G	ENSMUST00000048706.9	1	ENSMUSG00000040044	missense	Y/H	615	Orc3	ENSMUST00000048706.9:c.1843T>C	ENSMUSP00000048319.3:p.Tyr615His	H-2-Kb	8	6	6	LNNPYHYL	LNNPYYYL	NetMHCpan	160.1	100.7	0.629	57	0.386	194.772	144.784	0.743	231.5	628.08	100.7	160.1	124.0909187	170.8991883	165.4778997	218.6452264	M2	-1.514285714	-1.514285714	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.39	57	76	30	0.394736842	4qA5	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr3	157312902	157312902	C	T	ENSMUST00000074015.10	1	ENSMUSG00000040037	missense	L/F	347	Negr1	ENSMUST00000074015.10:c.1039C>T	ENSMUSP00000073664.4:p.Leu347Phe	H-2-Kb	9	12	9	IFYLKNAIF	IFYLKNAIL	SMM	146.592	86.918	0.593	94	0.277	161.23	88.179	0.547	89.44	172.75	131.7	353.4	86.91805512	146.5919088	86.54659777	149.7097207	M2	0.6	0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.267	94	0	0	NA	3qH4	chr3-156859184-159913826	3	2	1	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr4	45307923	45307923	CT	C	ENSMUST00000044673.8	1	ENSMUSG00000035601	FS	L/X	203	Trmt10b	ENSMUST00000044673.8:c.612del	ENSMUSP00000041052.2:p.Pro205LeufsTer8	H-2-Kb	9	9	5	FSLFLWKPL	FSLFPLETL	NetMHCpan	127.2	1483.2	11.66	190	0.363	215.539	984.497	4.568	761.94	209.13	1483.2	127.2	889.4263671	253.577082	1079.567993	221.9473684	M2	1.114285714	1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.372	190	45	3	0.066666667	4qB1	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr4	62386110	62386110	A	G	ENSMUST00000084526.11	1	ENSMUSG00000066150	missense	D/G	56	Slc31a1	ENSMUST00000084526.11:c.167A>G	ENSMUSP00000081574.5:p.Asp56Gly	H-2-Kb	9	7	5	TFYFGFKNV	TFYFDFKNV	NetMHCpan	202.2	433.1	2.142	134	0.052	300.479	428.493	1.426	386.91	243.48	433.1	202.2	516.547186	411.2538721	423.8869047	357.4785601	M2	0.1	0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.058	134	137	5	0.03649635	4qB3	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	0.243735776	sgMsh2	cell line
chr3	155137385	155137385	AT	A	ENSMUST00000194376.1	1	ENSMUSG00000028182	FS	N/X	298	Lrriq3	ENSMUST00000194376.1:c.897del	ENSMUSP00000142127.1:p.His300ThrfsTer32	H-2-Kb	9	21	0	LTFHQYKGI	NA	NetMHCpan	249.3	NA	NA	178	0.382	334.616	NA	NA	NA	317.47	NA	249.3	NA	377.6678362	NA	351.7628732	M2	-0.714285714	-0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.37	178	0	0	NA	3qH4	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	2	1	sgMsh2	cell line
chr3	155137385	155137385	AT	A	ENSMUST00000194376.1	1	ENSMUSG00000028182	FS	N/X	298	Lrriq3	ENSMUST00000194376.1:c.897del	ENSMUSP00000142127.1:p.His300ThrfsTer32	H-2-Kb	9	10	4	VNFTEVGWM	NA	SMMPMBEC	346.937	NA	NA	178	0.382	357.03	NA	NA	NA	962.72	NA	361.6	NA	352.4601324	NA	346.9365057	M2	0.485714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.37	178	0	0	NA	3qH4	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	2	1	sgMsh2	cell line
chr4	136554214	136554214	T	A	ENSMUST00000105847.7	5	ENSMUSG00000036940	missense	K/M	682	Kdm1a	ENSMUST00000105847.7:c.2045A>T	ENSMUSP00000101473.1:p.Lys682Met	H-2-Db	9	6	6	FGNLNMVVL	FGNLNKVVL	NetMHC	15.68	50.61	3.228	84	0.405	76.126	173.018	2.273	50.61	15.68	144.4	54.4	281.5917975	138.8736979	201.6368945	97.8520661	M2	1.557142857	1.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.414	84	142	11	0.077464789	4qD3	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr4	155268251	155268251	T	G	ENSMUST00000030922.14	1	ENSMUSG00000029053	missense	K/T	473	Prkcz	ENSMUST00000030922.14:c.1418A>C	ENSMUSP00000030922.7:p.Lys473Thr	H-2-Db	9	5	7	FQVILETPI	FQVILEKPI	NetMHC	96.91	1744.74	18.004	137	0.336	220.135	1380.05	6.269	1744.74	96.91	2345.3	278.3	1015.359882	224.7087583	992.1332393	215.5609059	M2	1.6	1.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.337	137	27	8	0.296296296	4qE2	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr4	143852045	143852045	T	C	ENSMUST00000094522.7	1	ENSMUSG00000029451	missense	Y/H	292	Gm13103	ENSMUST00000094522.7:c.874T>C	ENSMUSP00000092099.1:p.Tyr292His	H-2-Kb	8	10	2	VHFIYGNL	VYFIYGNL	NetMHC	3.16	4.69	1.484	174	0.339	3.563	5.432	1.525	4.69	3.16	10.7	9.6	5.257024488	3.263923717	5.607121928	3.861357391	M2	0.385714286	0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.343	174	0	0	NA	4qE1	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr4	135967358	135967358	CA	C	ENSMUST00000102540.1	1	ENSMUSG00000028671	FS	N/X	267	Gale	ENSMUST00000102540.1:c.800del	ENSMUSP00000099599.1:p.Asn267ThrfsTer166	H-2-Kb	8	144	0	KSRSFQPV	NA	NetMHC	34.63	NA	NA	38	0.263	97.887	NA	NA	NA	34.63	NA	181.8	NA	87.44601036	NA	108.3278191	M2	-0.6	-0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.262	38	94	0	0	4qD3	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr4	155966486	155966486	T	C	ENSMUST00000024338.4	1	ENSMUSG00000023571	missense	M/T	304	C1qtnf12	ENSMUST00000024338.4:c.911T>C	ENSMUSP00000024338.4:p.Met304Thr	H-2-Kb	8	12	6	SSFSGTLL	SSFSGMLL	NetMHCpan	66.9	50.3	0.752	92	0.37	86.988	70.723	0.813	34.09	71	50.3	66.9	95.22259222	121.8260042	91.14650073	102.9769442	M2	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.345	92	12	4	0.333333333	4qE2	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr4	139640665	139640665	A	G	ENSMUST00000039818.9	1	ENSMUSG00000028737	missense	T/A	306	Aldh4a1	ENSMUST00000039818.9:c.916A>G	ENSMUSP00000043821.9:p.Thr306Ala	H-2-Kb	8	8	4	RFRAFPRL	RFRTFPRL	SMM	54.293	53.179	0.979	55	0.091	87.052	74.246	0.853	78.71	97.59	160.4	151.2	53.17897962	54.29252	69.78145169	76.51384027	M2	0.085714286	0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.111	55	11	3	0.272727273	4qD3	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	0.466459848	sgMsh2	cell line
chr4	135967358	135967358	CA	C	ENSMUST00000102540.1	1	ENSMUSG00000028671	FS	N/X	267	Gale	ENSMUST00000102540.1:c.800del	ENSMUSP00000099599.1:p.Asn267ThrfsTer166	H-2-Kb	8	8	4	RTYTWARA	NA	SMMPMBEC	100.401	NA	NA	38	0.263	137.447	NA	NA	NA	124.67	NA	279.1	NA	150.2242346	NA	100.4014535	M2	-0.642857143	-0.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.262	38	94	0	0	4qD3	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr4	115068554	115068554	TC	T	ENSMUST00000030489.8	1	ENSMUSG00000028717	FS	I/X	273	Tal1	ENSMUST00000030489.8:c.824del	ENSMUSP00000030489.2:p.Pro275LeufsTer82	H-2-Kb	8	77	0	QAGAFRPL	NA	NetMHC	137.79	NA	NA	15	0.333	228.578	NA	NA	NA	137.79	NA	588.8	NA	207.8452003	NA	249.310173	M2	0.528571429	0.528571429	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.31	15	0	0	NA	4qD1	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr4	120886945	120886945	C	T	ENSMUST00000071093.8	1	ENSMUSG00000032890	missense	P/L	124	Rims3	ENSMUST00000071093.8:c.371C>T	ENSMUSP00000068178.2:p.Pro124Leu	H-2-Kb	8	7	5	TFIFLTRL	TFIFPTRL	NetMHCpan	49.6	106	2.137	44	0.25	194.02	549.467	2.832	531.73	162.75	106	49.6	567.204934	225.2890066	685.0779666	240.8463117	M2	1.785714286	1.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.263	44	0	0	NA	4qD2.2	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr5	16359028	16359028	T	C	ENSMUST00000039370.13	1	ENSMUSG00000040118	missense	V/A	903	Cacna2d1	ENSMUST00000039370.13:c.2708T>C	ENSMUSP00000049457.7:p.Val903Ala	H-2-Kb	8	4	8	KSYDYQSA	KSYDYQSV	NetMHCpan	154.7	15.4	0.1	72	0.375	204.33	27.778	0.136	12.68	168.92	15.4	154.7	40.15503419	239.7397234	51.49202839	247.5939338	M2	-1.342857143	-1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.386	72	7	0	0	5qA3	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	2	1	sgMsh2	cell line
chr4	155069021	155069021	T	G	ENSMUST00000103180.3	1	ENSMUSG00000029047	missense	I/M	182	Pex10	ENSMUST00000103180.3:c.546T>G	ENSMUSP00000099469.3:p.Ile182Met	H-2-Kb	8	11	1	MHGTFYHL	IHGTFYHL	SMMPMBEC	155.503	71.571	0.46	72	0.319	235.779	80.872	0.343	80.51	309.1	169.9	352	81.23440428	162.4575876	71.57148034	155.5034397	M2	-0.314285714	-0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.333	72	1	0	0	4qE2	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr5	27842567	27842567	G	A	ENSMUST00000036227.6	1	ENSMUSG00000039106	missense	R/Q	40	Htr5a	ENSMUST00000036227.6:c.119G>A	ENSMUSP00000038884.5:p.Arg40Gln	H-2-Kb	8	8	4	SAFQVLVL	SAFRVLVL	SMM	148.505	125.528	0.845	119	0.445	198.269	141.235	0.712	196.42	372.6	89.1	203.9	125.5278239	148.504632	156.9422953	192.6371303	M2	2.442857143	2.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.454	119	0	0	NA	5qB1	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	2	1	sgMsh2	cell line
chr5	3673162	3673162	T	C	ENSMUST00000014673.8	1	ENSMUSG00000014529	missense	I/T	231	Tmbim7	ENSMUST00000014673.8:c.692T>C	ENSMUSP00000014673.2:p.Ile231Thr	H-2-Kb	8	7	5	LIYGTIAL	LIYGIIAL	SMMPMBEC	338.641	366.218	1.081	140	0.321	379.899	400.735	1.055	501.32	404.38	344.3	444	435.2512229	355.4184757	366.2182643	338.6413603	M2	1.742857143	1.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.328	140	0	0	NA	5qA1	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr5	3673162	3673162	T	C	ENSMUST00000014673.8	1	ENSMUSG00000014529	missense	I/T	231	Tmbim7	ENSMUST00000014673.8:c.692T>C	ENSMUSP00000014673.2:p.Ile231Thr	H-2-Kb	8	5	7	VLLIYGTI	VLLIYGII	NetMHCpan	142	579.7	4.082	140	0.321	310.354	756.542	2.438	1677.7	445.42	579.7	142	772.2181412	337.0854446	740.8665723	283.6220554	M2	2.028571429	2.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.328	140	0	0	NA	5qA1	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr4	155069021	155069021	T	G	ENSMUST00000103180.3	1	ENSMUSG00000029047	missense	I/M	182	Pex10	ENSMUST00000103180.3:c.546T>G	ENSMUSP00000099469.3:p.Ile182Met	H-2-Kb	8	6	6	VAWFYMHG	VAWFYIHG	SMM	88.052	124.377	1.413	72	0.319	255.688	481.612	1.884	1556.42	599.87	818.1	399.5	124.3769779	88.05215715	145.1242539	111.8767908	M2	0.1	0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.333	72	1	0	0	4qE2	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr4	135967358	135967358	CA	C	ENSMUST00000102540.1	1	ENSMUSG00000028671	FS	N/X	267	Gale	ENSMUST00000102540.1:c.800del	ENSMUSP00000099599.1:p.Asn267ThrfsTer166	H-2-Kb	8	80	0	RSRTLRAL	NA	SMM	258.071	NA	NA	38	0.263	481.128	NA	NA	NA	638.11	NA	2643.8	NA	258.0714726	NA	324.1455024	M2	-0.157142857	-0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.262	38	94	0	0	4qD3	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr4	143895385	143895385	T	C	ENSMUST00000105767.1	5	ENSMUSG00000078512	missense	I/V	467	Pramef6	ENSMUST00000105767.1:c.1399A>G	ENSMUSP00000101393.1:p.Ile467Val	H-2-Kb	9	13	2	CVYSFVGNI	CIYSFVGNI	NetMHC	23.45	22.06	0.941	154	0.312	90.759	96.799	1.067	22.06	23.45	42.9	35.6	150.6988715	145.9183802	252.4933823	247.8848587	M2	0.785714286	1.6	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.317	154	0	0	NA	4qE1	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr4	124942369	124942369	T	C	ENSMUST00000094769.12	1	ENSMUSG00000044730	missense	Y/H	158	9930104L06Rik	ENSMUST00000094769.12:c.472T>C	ENSMUSP00000154851.1:p.Tyr158His	H-2-Kb	9	4	8	SSYLKRKHL	SSYLKRKYL	NetMHC	33.01	28.82	0.873	69	0.319	69.015	66.097	0.958	28.82	33.01	64.1	72.7	68.09418088	65.32960014	84.382036	77.13473645	M2	-1.314285714	-1.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.328	69	8	1	0.125	4qD2.2	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr4	120886945	120886945	C	T	ENSMUST00000071093.8	1	ENSMUSG00000032890	missense	P/L	124	Rims3	ENSMUST00000071093.8:c.371C>T	ENSMUSP00000068178.2:p.Pro124Leu	H-2-Kb	9	6	6	GTFIFLTRL	GTFIFPTRL	NetMHCpan	28.1	39.6	1.409	44	0.25	60.436	144.364	2.389	86.31	36.1	39.6	28.1	215.332707	91.43448014	202.4184057	84.77152578	M2	1.785714286	1.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.263	44	0	0	NA	4qD2.2	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr4	155069021	155069021	T	G	ENSMUST00000103180.3	1	ENSMUSG00000029047	missense	I/M	182	Pex10	ENSMUST00000103180.3:c.546T>G	ENSMUSP00000099469.3:p.Ile182Met	H-2-Kb	9	10	2	YMHGTFYHL	YIHGTFYHL	NetMHC	159.62	219.23	1.373	72	0.319	188.296	355.71	1.889	219.23	159.62	277.8	182.9	433.6206938	193.6912491	687.4640623	332.0855664	M2	-0.314285714	-0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.333	72	1	0	0	4qE2	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr4	155069021	155069021	T	G	ENSMUST00000103180.3	1	ENSMUSG00000029047	missense	I/M	182	Pex10	ENSMUST00000103180.3:c.546T>G	ENSMUSP00000099469.3:p.Ile182Met	H-2-Kb	9	7	5	AWFYMHGTF	AWFYIHGTF	SMM	130.05	341.279	2.624	72	0.319	193.94	435.221	2.244	455.25	209.54	926.2	545.8	341.2793414	130.0498932	415.1929781	178.3405083	M2	0.271428571	0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.333	72	1	0	0	4qE2	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr4	143895385	143895385	T	C	ENSMUST00000105767.1	5	ENSMUSG00000078512	missense	I/V	467	Pramef6	ENSMUST00000105767.1:c.1399A>G	ENSMUSP00000101393.1:p.Ile467Val	H-2-Kb	9	10	5	RNFCVYSFV	RNFCIYSFV	NetMHCpan	85.7	73	0.852	154	0.312	357.494	308.946	0.864	234.97	248.06	73	85.7	382.9217191	472.1826226	388.3738676	466.9280884	M2	2.057142857	2.057142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.317	154	0	0	NA	4qE1	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr5	3673162	3673162	T	C	ENSMUST00000014673.8	1	ENSMUSG00000014529	missense	I/T	231	Tmbim7	ENSMUST00000014673.8:c.692T>C	ENSMUSP00000014673.2:p.Ile231Thr	H-2-Kb	9	7	5	LIYGTIALV	LIYGIIALV	NetMHC	255.57	661.63	2.589	140	0.321	399.072	568.543	1.425	661.63	255.57	1069.9	902.4	475.4556362	346.02701	472.3348608	452.1161284	M2	1.7	1.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.328	140	0	0	NA	5qA1	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr5	16359028	16359028	T	C	ENSMUST00000039370.13	1	ENSMUSG00000040118	missense	V/A	903	Cacna2d1	ENSMUST00000039370.13:c.2708T>C	ENSMUSP00000049457.7:p.Val903Ala	H-2-Kb	9	4	8	KSYDYQSAC	KSYDYQSVC	NetMHCpan	276.2	497	1.799	72	0.375	416.065	787.162	1.892	922.32	305.81	497	276.2	924.9324152	656.3114787	652.0036095	526.3201534	M2	-0.871428571	-0.871428571	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.386	72	7	0	0	5qA3	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	2	1	sgMsh2	cell line
chr4	139640665	139640665	A	G	ENSMUST00000039818.9	1	ENSMUSG00000028737	missense	T/A	306	Aldh4a1	ENSMUST00000039818.9:c.916A>G	ENSMUSP00000043821.9:p.Thr306Ala	H-2-Kb	9	4	8	QNLDRFRAF	QNLDRFRTF	SMM	226.001	239.944	1.062	55	0.091	312.457	354.948	1.136	385.37	323.44	1098.6	1301.5	239.9440583	226.0008122	324.526376	301.4740949	M2	-0.185714286	-0.185714286	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.111	55	11	3	0.272727273	4qD3	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	0.466459848	sgMsh2	cell line
chr4	117044583	117044583	GA	G	ENSMUST00000106448.8	5	ENSMUSG00000028683	FS	K/X	148	Eif2b3	ENSMUST00000106448.8:c.450del	ENSMUSP00000102056.2:p.Lys150AsnfsTer58	H-2-Kb	9	54	0	LGYISTQAL	NA	NetMHCpan	237.6	NA	NA	93	0.366	484.339	NA	NA	NA	380.85	NA	237.6	NA	638.4251688	NA	587.8276359	M2	0.542857143	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.36	93	51	0	0	4qD1	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr5	3673162	3673162	T	C	ENSMUST00000014673.8	1	ENSMUSG00000014529	missense	I/T	231	Tmbim7	ENSMUST00000014673.8:c.692T>C	ENSMUSP00000014673.2:p.Ile231Thr	H-2-Kb	9	4	8	SVLLIYGTI	SVLLIYGII	NetMHCpan	276.2	1014.9	3.675	140	0.321	446.055	804.767	1.804	1087.34	388.32	1014.9	276.2	565.0800826	505.9527957	594.6343592	503.7905305	M2	2.028571429	2.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.328	140	0	0	NA	5qA1	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr4	155069021	155069021	T	G	ENSMUST00000103180.3	1	ENSMUSG00000029047	missense	I/M	182	Pex10	ENSMUST00000103180.3:c.546T>G	ENSMUSP00000099469.3:p.Ile182Met	H-2-Kb	9	6	6	VAWFYMHGT	VAWFYIHGT	SMMPMBEC	296.654	386.589	1.303	72	0.319	366.731	465.832	1.27	684.88	393.67	468.1	352.3	463.5643185	381.1623536	386.5894518	296.6538575	M2	-0.257142857	0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.333	72	1	0	0	4qE2	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr4	117273115	117273115	T	C	ENSMUST00000030439.14	1	ENSMUSG00000028677	missense	M/V	523	Rnf220	ENSMUST00000030439.14:c.1567A>G	ENSMUSP00000030439.8:p.Met523Val	H-2-Kb	9	5	7	CMDSYSVPL	CMDSYSMPL	SMM	184.124	175.029	0.951	81	0.049	407.003	336.844	0.828	272.59	454.05	512.9	760	175.0289954	184.1238299	401.0975415	359.9564831	M2	6.34E-17	0.314285714	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.063	81	39	4	0.102564103	4qD1	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	0.264747481	sgMsh2	cell line
chr4	96228636	96228636	A	C	ENSMUST00000162514.2	5	ENSMUSG00000081362	missense	L/V	152	Cyp2j7	ENSMUST00000162514.2:c.454T>G	ENSMUSP00000134331.1:p.Leu152Val	H-2-Kb	9	3	9	LMILKSFGV	LMILKSFGL	SMM	322.188	143.255	0.445	153	0.34	476.336	217.841	0.457	215.77	460.35	438.9	2136.3	143.2550696	322.1884741	219.9125427	492.3228579	M2	1.457142857	1.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.343	153	0	0	NA	4qC5	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr5	31040436	31040436	T	C	ENSMUST00000114668.6	1	ENSMUSG00000006641	missense	I/V	310	Slc5a6	ENSMUST00000114668.6:c.928A>G	ENSMUSP00000110316.1:p.Ile310Val	H-2-Kb	9	11	1	VGLVMFAYY	IGLVMFAYY	SMM	176.242	259.484	1.472	71	0.338	453.049	578.617	1.277	846.6	671.54	1237.9	1273.8	259.483651	176.2422384	310.6347231	234.557865	M2	1.7	2.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.334	71	6	2	0.333333333	5qB1	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	2	1	sgMsh2	cell line
chr5	137113037	137113037	C	T	ENSMUST00000054384.5	1	ENSMUSG00000043279	missense	A/T	542	Trim56	ENSMUST00000054384.5:c.1624G>A	ENSMUSP00000058109.5:p.Ala542Thr	H-2-Db	9	4	8	AALQNAVTF	AALQNAVAF	NetMHC	7.54	13.67	1.813	63	0.286	26.718	46.692	1.748	13.67	7.54	37.2	20.2	56.18495017	33.23686094	57.09130891	35.44622582	M2	0.7	0.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.291	63	24	6	0.25	5qG2	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr5	76621329	76621329	A	G	ENSMUST00000121979.7	5	ENSMUSG00000036403	missense	T/A	609	Cep135	ENSMUST00000121979.7:c.1825A>G	ENSMUSP00000112602.1:p.Thr609Ala	H-2-Db	9	10	2	KAIEHLTYI	KTIEHLTYI	NetMHC	21.41	245.38	11.461	95	0.411	69.72	435.687	6.249	245.38	21.41	243.2	29.9	768.4577591	118.2006868	625.9937541	109.5393098	M2	0.585714286	0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.402	95	12	4	0.333333333	5qC3.3	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	2	1	sgMsh2	cell line
chr5	34848948	34848948	T	A	ENSMUST00000080036.2	1	ENSMUSG00000029104	missense	H/Q	1400	Htt	ENSMUST00000080036.2:c.4200T>A	ENSMUSP00000078945.2:p.His1400Gln	H-2-Db	9	8	4	NAIQNHIRL	NAIHNHIRL	NetMHCpan	42.5	130.5	3.071	156	0.288	128.892	250.646	1.945	219.7	50.95	130.5	42.5	281.5917975	206.8330804	333.8643134	252.6794949	M2	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.293	156	35	10	0.285714286	5qB2	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr6	18433922	18433922	AG	A	ENSMUST00000090601.11	1	ENSMUSG00000000416	FS	L/X	646	Cttnbp2	ENSMUST00000090601.11:c.1936del	ENSMUSP00000088089.5:p.Val647SerfsTer12	H-2-Db	9	9	4	SSLSFPPPL	NA	SMM	325.552	NA	NA	127	0.189	478.212	NA	NA	NA	569.55	NA	591.9	NA	325.5517243	NA	386.8744064	M2	0.685714286	0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.192	127	0	0	NA	6qA2	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.806849466	sgMsh2	cell line
chr6	24089045	24089045	A	G	ENSMUST00000031713.8	1	ENSMUSG00000029700	missense	F/L	569	Slc13a1	ENSMUST00000031713.8:c.1705T>C	ENSMUSP00000031713.7:p.Phe569Leu	H-2-Db	9	6	6	VMLGMLTWI	VMLGMFTWI	SMMPMBEC	365.233	387.766	1.062	139	0.151	474.321	477.308	1.006	539.07	570.53	1711.2	2066.9	415.5468552	378.111599	387.766244	365.2329911	M2	1.714285714	2.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.155	139	0	0	NA	6qA3.1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.65136285	sgMsh2	cell line
chr5	57721359	57721359	T	C	ENSMUST00000191837.5	1	ENSMUSG00000029108	missense	L/S	752	Pcdh7	ENSMUST00000191837.5:c.2255T>C	ENSMUSP00000142319.1:p.Leu752Ser	H-2-Kb	8	5	7	RNISYTSL	RNISYTLL	NetMHC	17.31	17.09	0.987	200	0.27	37.571	44.968	1.197	17.09	17.31	18.2	19.2	71.73646964	55.94225905	78.83879904	59.94321055	M2	0.171428571	0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.27	200	69	0	0	5qC1	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr6	13193189	13193189	T	C	ENSMUST00000054530.6	1	ENSMUSG00000079679	missense	T/A	384	Vwde	ENSMUST00000054530.6:c.1150A>G	ENSMUSP00000058110.5:p.Thr384Ala	H-2-Kb	8	6	6	AVLYYAAV	AVLYYTAV	NetMHC	18.5	70.64	3.818	98	0.133	51.667	133.063	2.575	70.64	18.5	72.6	37	198.0341096	69.30107956	193.5263029	66.33458249	M2	1.885714286	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.135	98	0	0	NA	6qA1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.567316031	sgMsh2	cell line
chr5	66284195	66284195	GT	G	ENSMUST00000031109.6	5	ENSMUSG00000029206	FS	S/X	402	Nsun7	ENSMUST00000031109.6:c.1208del	ENSMUSP00000031109.4:p.Leu403TyrfsTer26	H-2-Kb	8	10	3	KSYFKIFL	NA	NetMHCpan	40.1	NA	NA	85	0.306	147.864	NA	NA	NA	140.94	NA	40.1	NA	154.7889663	NA	171.2931516	M2	1.128571429	1.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.313	85	0	0	NA	5qC3.1	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr6	18405230	18405230	T	C	ENSMUST00000090601.11	1	ENSMUSG00000000416	missense	Y/C	1090	Cttnbp2	ENSMUST00000090601.11:c.3269A>G	ENSMUSP00000088089.5:p.Tyr1090Cys	H-2-Kb	8	7	5	SSVTCASM	SSVTYASM	NetMHC	276.55	6.31	0.023	262	0.164	362.299	24.523	0.068	6.31	276.55	15.8	475.5	35.70590129	399.7053856	33.24604589	324.8927349	M2	1.157142857	1.157142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.161	262	0	0	NA	6qA2	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.676576896	sgMsh2	cell line
chr5	34848948	34848948	T	A	ENSMUST00000080036.2	1	ENSMUSG00000029104	missense	H/Q	1400	Htt	ENSMUST00000080036.2:c.4200T>A	ENSMUSP00000078945.2:p.His1400Gln	H-2-Kb	8	9	3	AIQNHIRL	AIHNHIRL	SMM	233.206	203.582	0.873	156	0.288	335.761	210.611	0.627	187.86	352.56	450.7	1017.2	203.5822922	233.2061504	217.6406428	318.9627742	M2	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.293	156	35	10	0.285714286	5qB2	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr5	123758488	123758488	A	G	ENSMUST00000031366.11	1	ENSMUSG00000029414	missense	N/D	138	Kntc1	ENSMUST00000031366.11:c.412A>G	ENSMUSP00000031366.7:p.Asn138Asp	H-2-Kb	8	5	7	SQRTYRDL	SQRTYRNL	SMM	239.74	37.217	0.155	120	0.617	352.064	42.914	0.122	25.66	412.56	218.3	1756.2	37.21688324	239.7397234	48.61160944	291.5680954	M2	-2.028571429	-2.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.634	120	13	12	0.923076923	5qF	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	3	1	sgMsh2	cell line
chr5	31251970	31251970	T	C	ENSMUST00000054829.12	1	ENSMUSG00000029149	missense	L/P	27	Krtcap3	ENSMUST00000054829.12:c.80T>C	ENSMUSP00000060414.7:p.Leu27Pro	H-2-Kb	8	5	7	VGLALIPV	VGLALILV	SMM	284.931	754.64	2.649	37	0.459	379.991	1174.239	3.09	1535.7	430.57	1441.2	435.3	754.6403103	284.9311953	907.277206	329.4124431	M2	2.3	2.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.459	37	9	2	0.222222222	5qB1	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	2	1	sgMsh2	cell line
chr5	44045543	44045543	T	C	ENSMUST00000074113.12	1	ENSMUSG00000029086	missense	N/S	225	Prom1	ENSMUST00000074113.12:c.674A>G	ENSMUSP00000073751.6:p.Asn225Ser	H-2-Kb	8	10	2	KSKAFSDL	KNKAFSDL	SMMPMBEC	226.851	472.868	2.084	118	0.356	342.325	672.734	1.965	1196.36	446.56	872.6	585.1	440.2911945	238.0893668	472.8680813	226.8506354	M2	-0.085714286	-0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.342	118	0	0	NA	5qB3	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	2	1	sgMsh2	cell line
chr5	121467865	121467865	C	T	ENSMUST00000124247.7	1	ENSMUSG00000029452	missense	L/F	116	Tmem116	ENSMUST00000124247.7:c.344C>T	ENSMUSP00000134334.2:p.Leu116Phe	H-2-Kb	8	14	3	ATFVSELL	ATLVSELL	NetMHCpan	305.4	2743.7	8.984	71	0.296	416.754	2295.931	5.509	3351.16	510.35	2743.7	305.4	1697.227266	406.2000757	1848.161845	427.3069928	M2	1.371428571	1.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.324	71	1	0	0	5qF	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr5	87694728	87694728	C	T	ENSMUST00000197422.4	1	ENSMUSG00000063157	missense	A/T	147	Csn2	ENSMUST00000197422.4:c.439G>A	ENSMUSP00000143341.1:p.Ala147Thr	H-2-Kb	8	9	3	SLTSLANL	SLASLANL	SMM	381.716	341.775	0.895	114	0.675	487.6	375.638	0.77	720.32	664.91	348.8	569	341.7747702	381.7156799	402.476011	406.2000757	M2	1.171428571	1.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.679	114	0	0	NA	5qE1	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	3	1	sgMsh2	cell line
chr5	113095599	113095599	C	T	ENSMUST00000212276.1	5	ENSMUSG00000051339	missense	D/N	270	2900026A02Rik	ENSMUST00000212276.1:c.808G>A	ENSMUSP00000148442.1:p.Asp270Asn	H-2-Kb	8	5	7	STWMFKNS	STWMFKDS	SMMPMBEC	140.845	844.773	5.998	46	0.239	372.812	2140.473	5.741	7324.23	701.5	3346.1	600.5	934.8458404	145.1242539	844.7729517	140.8445349	M2	-0.728571429	-0.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.245	46	13	4	0.307692308	5qF	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr6	18433922	18433922	AG	A	ENSMUST00000090601.11	1	ENSMUSG00000000416	FS	L/X	646	Cttnbp2	ENSMUST00000090601.11:c.1936del	ENSMUSP00000088089.5:p.Val647SerfsTer12	H-2-Kb	9	9	4	SSLSFPPPL	NA	NetMHC	8.92	NA	NA	127	0.189	47.44	NA	NA	NA	8.92	NA	20.9	NA	73.97926292	NA	122.8146005	M2	0.685714286	0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.192	127	0	0	NA	6qA2	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.806849466	sgMsh2	cell line
chr6	13193189	13193189	T	C	ENSMUST00000054530.6	1	ENSMUSG00000079679	missense	T/A	384	Vwde	ENSMUST00000054530.6:c.1150A>G	ENSMUSP00000058110.5:p.Thr384Ala	H-2-Kb	9	5	7	QAVLYYAAV	QAVLYYTAV	NetMHC	15.98	41.44	2.593	98	0.133	75.31	108.396	1.439	41.44	15.98	80.3	48.5	136.4928808	102.1198104	174.2809827	128.0117987	M2	1.885714286	1.885714286	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.135	98	0	0	NA	6qA1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.567316031	sgMsh2	cell line
chr5	140524513	140524513	C	G	ENSMUST00000043050.8	1	ENSMUSG00000036599	missense	S/R	298	Chst12	ENSMUST00000043050.8:c.894C>G	ENSMUSP00000041663.8:p.Ser298Arg	H-2-Kb	9	6	6	VSEAFRAGL	VSEAFSAGL	NetMHC	20.94	18.1	0.864	35	0.429	152.901	140.712	0.92	18.1	20.94	97.3	105.7	184.1238299	242.1642333	188.4733717	200.1013414	M2	0.257142857	0.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.46	35	28	16	0.571428571	5qG2	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	2	1	sgMsh2	cell line
chr5	101944143	101944143	T	A	ENSMUST00000053177.13	1	ENSMUSG00000043940	missense	K/N	443	Wdfy3	ENSMUST00000053177.13:c.1329A>T	ENSMUSP00000052607.7:p.Lys443Asn	H-2-Kb	9	8	4	VQNNYFEML	VQNKYFEML	NetMHC	62.66	107.77	1.72	118	0.271	165.336	170.625	1.032	107.77	62.66	106.6	107.7	272.3391013	275.4926395	233.4801695	222.9718309	M2	-0.471428571	-0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.261	118	47	16	0.340425532	5qE5	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr6	23001661	23001661	C	T	ENSMUST00000090568.6	1	ENSMUSG00000068748	missense	P/L	1250	Ptprz1	ENSMUST00000090568.6:c.3749C>T	ENSMUSP00000088056.3:p.Pro1250Leu	H-2-Kb	9	3	9	SMLHFTSVL	SMLHFTSVP	NetMHCpan	36.9	8207.6	222.428	255	0.212	75.69	4330.371	57.212	7854.9	63.05	8207.6	36.9	407.4834739	88.33035991	805.8421878	109.4586279	M2	1.414285714	1.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.217	255	0	0	NA	6qA3.1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.91190799	sgMsh2	cell line
chr6	24089045	24089045	A	G	ENSMUST00000031713.8	1	ENSMUSG00000029700	missense	F/L	569	Slc13a1	ENSMUST00000031713.8:c.1705T>C	ENSMUSP00000031713.7:p.Phe569Leu	H-2-Kb	9	3	9	VAVVMLGML	VAVVMLGMF	NetMHC	108.71	331.29	3.047	139	0.151	155.842	309.598	1.987	331.29	108.71	1026.3	239.6	244.968363	145.2479461	287.9055255	166.4370463	M2	2.771428571	2.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.155	139	0	0	NA	6qA3.1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.65136285	sgMsh2	cell line
chr5	137113037	137113037	C	T	ENSMUST00000054384.5	1	ENSMUSG00000043279	missense	A/T	542	Trim56	ENSMUST00000054384.5:c.1624G>A	ENSMUSP00000058109.5:p.Ala542Thr	H-2-Kb	9	10	2	VTFSANAKL	VAFSANAKL	NetMHCpan	65	62.3	0.958	63	0.286	170.759	131.688	0.771	94.29	109.11	62.3	65	169.0869148	232.8681001	179.9906727	232.4074256	M2	0.285714286	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.291	63	24	6	0.25	5qG2	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr5	52848016	52848016	A	G	ENSMUST00000031072.13	1	ENSMUSG00000029176	missense	Q/R	301	Anapc4	ENSMUST00000031072.13:c.902A>G	ENSMUSP00000031072.7:p.Gln301Arg	H-2-Kb	9	9	3	SVRDEFMHL	SVQDEFMHL	NetMHCpan	107.4	185.5	1.727	33	0.273	228.321	411.963	1.804	155.92	116.93	185.5	107.4	638.4251688	339.7113053	843.82036	474.5150595	M2	-0.885714286	-0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.265	33	129	33	0.255813953	5qC1	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr5	66284195	66284195	GT	G	ENSMUST00000031109.6	5	ENSMUSG00000029206	FS	S/X	402	Nsun7	ENSMUST00000031109.6:c.1208del	ENSMUSP00000031109.4:p.Leu403TyrfsTer26	H-2-Kb	9	26	0	SRLWFSSSL	NA	NetMHC	126.92	NA	NA	85	0.306	295.987	NA	NA	NA	126.92	NA	285.7	NA	306.2739079	NA	481.1162215	M2	1.014285714	1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.313	85	0	0	NA	5qC3.1	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr5	137758482	137758482	TG	T	ENSMUST00000110985.1	2	ENSMUSG00000029723	FS	L/X	57	Tsc22d4	ENSMUST00000110985.1:c.177del	ENSMUSP00000106613.1:p.Pro60GlnfsTer18	H-2-Kb	9	22	0	VGWTKAFSL	NA	NetMHCpan	103.3	NA	NA	55	0.764	321.493	NA	NA	NA	216.16	NA	103.3	NA	472.1826226	NA	426.8251484	M2	0.3	0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.781	55	1	0	0	5qG2	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	3	1	sgMsh2	cell line
chr5	101944090	101944090	T	C	ENSMUST00000053177.13	1	ENSMUSG00000043940	missense	K/R	461	Wdfy3	ENSMUST00000053177.13:c.1382A>G	ENSMUSP00000052607.7:p.Lys461Arg	H-2-Kb	9	5	7	LNYIPCREL	LNYIPCKEL	NetMHCpan	162.8	323.2	1.985	110	0.327	262.115	363.046	1.385	484.84	218.66	323.2	162.8	341.2793414	305.5694975	384.8132346	375.1889162	M2	-0.014285714	-0.014285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.342	110	50	16	0.32	5qE5	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	2	1	sgMsh2	cell line
chr5	57721359	57721359	T	C	ENSMUST00000191837.5	1	ENSMUSG00000029108	missense	L/S	752	Pcdh7	ENSMUST00000191837.5:c.2255T>C	ENSMUSP00000142319.1:p.Leu752Ser	H-2-Kb	9	7	5	ISYTSLPPS	ISYTLLPPS	SMM	151.743	109.172	0.719	200	0.27	424.609	273.635	0.644	451.89	632.75	392.3	624.7	109.1716816	151.7434661	154.9708446	224.5173978	M2	-0.428571429	0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.27	200	69	0	0	5qC1	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr5	66284195	66284195	GT	G	ENSMUST00000031109.6	5	ENSMUSG00000029206	FS	S/X	402	Nsun7	ENSMUST00000031109.6:c.1208del	ENSMUSP00000031109.4:p.Leu403TyrfsTer26	H-2-Kb	9	11	2	SYFKIFLKV	NA	NetMHCpan	284.9	NA	NA	85	0.306	461.331	NA	NA	NA	808.39	NA	284.9	NA	503.6281538	NA	419.0347115	M2	1.471428571	1.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.313	85	0	0	NA	5qC3.1	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr5	66284195	66284195	GT	G	ENSMUST00000031109.6	5	ENSMUSG00000029206	FS	S/X	402	Nsun7	ENSMUST00000031109.6:c.1208del	ENSMUSP00000031109.4:p.Leu403TyrfsTer26	H-2-Kb	10	10	3	KSYFKIFLKV	NA	NetMHCpan	324.9	NA	NA	85	0.306	452.16	NA	NA	NA	376.69	NA	324.9	NA	527.6306309	NA	646.9340352	M2	1.471428571	1.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.313	85	0	0	NA	5qC3.1	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr6	57600007	57600007	T	C	ENSMUST00000031817.9	1	ENSMUSG00000029798	missense	L/P	235	Herc6	ENSMUST00000031817.9:c.704T>C	ENSMUSP00000031817.8:p.Leu235Pro	H-2-Db	9	6	6	GALKNPSVI	GALKNLSVI	NetMHC	13.46	7.99	0.594	132	0.076	47.099	27.26	0.579	7.99	13.46	16.8	37.5	48.2636319	70.24574131	37.71985373	56.6982951	M2	0.385714286	0.385714286	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.1	132	3	0	0	6qB3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.420234097	sgMsh2	cell line
chr6	107567567	107567567	A	G	ENSMUST00000049285.9	1	ENSMUSG00000034648	missense	N/D	109	Lrrn1	ENSMUST00000049285.9:c.325A>G	ENSMUSP00000037096.8:p.Asn109Asp	H-2-Db	9	4	8	FSQNNFTDI	FSQNNFTNI	NetMHC	98.08	74.23	0.757	200	0.145	115.299	90.521	0.785	74.23	98.08	73.3	114.3	106.8119884	136.3389673	112.3492041	116.2973985	M2	-1.057142857	-0.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.156	200	0	0	NA	6qE1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.655565191	sgMsh2	cell line
chr6	41627413	41627413	C	G	ENSMUST00000031902.6	1	ENSMUSG00000029868	missense	M/I	136	Trpv6	ENSMUST00000031902.6:c.408G>C	ENSMUSP00000031902.6:p.Met136Ile	H-2-Db	9	9	3	AAIVLMEAA	AAMVLMEAA	SMMPMBEC	216.556	275.15	1.271	114	0.219	446.121	563.52	1.263	838.89	659.1	1259.5	1600	288.150913	233.1417221	275.1503059	216.5558898	M2	2.071428571	2.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.223	114	0	0	NA	6qB2.1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.937122036	sgMsh2	cell line
chr6	42286884	42286884	TG	T	ENSMUST00000031894.12	1	ENSMUSG00000029862	FS	G/X	40	Clcn1	ENSMUST00000031894.12:c.122del	ENSMUSP00000031894.6:p.Gly41AlafsTer70	H-2-Db	9	65	0	TTILNVKTV	NA	NetMHCpan	370.5	NA	NA	48	0.188	457.664	NA	NA	NA	742.55	NA	370.5	NA	495.0168702	NA	420.3102682	M2	1.228571429	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.207	48	0	0	NA	6qB2.1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.869884581	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	8	4	8	VLVSYTRL	VLVSYTRI	NetMHC	19.39	171.38	8.839	162	0.185	31.763	209.772	6.604	171.38	19.39	99.5	20.3	348.1288376	53.67103866	248.1646968	43.22549746	M2	0.642857143	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.185	162	0	0	NA	6qB2.1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.777433079	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	8	6	6	VSYTRLLV	VSYTRILV	NetMHCpan	35.2	39.9	1.134	162	0.185	94.957	84.621	0.891	32.04	39.69	39.9	35.2	129.3421274	150.2242346	135.1263357	158.7596015	M2	0.642857143	0.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.185	162	0	0	NA	6qB2.1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.777433079	sgMsh2	cell line
chr6	53819299	53819299	G	A	ENSMUST00000127748.4	NA	ENSMUSG00000043496	missense	L/F	313	Tril	ENSMUST00000127748.4:c.937C>T	ENSMUSP00000116056.2:p.Leu313Phe	H-2-Kb	8	7	5	SGNEFSAL	SGNELSAL	NetMHC	46.74	2393.71	51.213	49	0.265	58.827	1554.712	26.428	2393.71	46.74	3712.2	175	533.0156983	50.55219295	715.7148034	67.10270075	M2	0.028571429	0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.256	49	0	0	NA	6qB3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr6	59003477	59003477	G	A	ENSMUST00000089860.11	1	ENSMUSG00000037709	missense	P/L	20	Fam13a	ENSMUST00000089860.11:c.59C>T	ENSMUSP00000087304.5:p.Pro20Leu	H-2-Kb	8	11	1	LFYLSAHV	PFYLSAHV	NetMHC	94.58	2283.96	24.148	190	0.132	157.599	1836.54	11.653	2283.96	94.58	8382.7	400.6	1053.755853	151.6142424	1389.120754	163.5836898	M2	1.042857143	1.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.135	190	0	0	NA	6qB3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.567316031	sgMsh2	cell line
chr6	35270381	35270381	A	G	ENSMUST00000031868.4	1	ENSMUSG00000029843	missense	I/T	568	Slc13a4	ENSMUST00000031868.4:c.1703T>C	ENSMUSP00000031868.4:p.Ile568Thr	H-2-Kb	8	11	1	TVFSYGHC	IVFSYGHC	SMMPMBEC	126.398	45.787	0.362	120	0.208	145.752	48.403	0.332	38.66	171.24	51.8	148.7	51.01994663	142.8038776	45.7867692	126.3979412	M2	0.542857143	0.542857143	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.214	120	0	0	NA	6qB1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.899300967	sgMsh2	cell line
chr6	30815960	30815960	A	G	ENSMUST00000048774.12	1	ENSMUSG00000025607	missense	V/A	480	Copg2	ENSMUST00000048774.12:c.1439T>C	ENSMUSP00000038368.6:p.Val480Ala	H-2-Kb	8	6	6	FIFNRAVL	FIFNRVVL	SMM	138.912	401.55	2.891	120	0.083	159.887	404.813	2.532	524.31	178.28	359.2	181.6	401.5503419	138.9120754	408.0750101	141.4946437	M2	1.3	1.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.091	120	115	12	0.104347826	6qA3.3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.382413028	sgMsh2	cell line
chr6	42286884	42286884	TG	T	ENSMUST00000031894.12	1	ENSMUSG00000029862	FS	G/X	40	Clcn1	ENSMUST00000031894.12:c.122del	ENSMUSP00000031894.6:p.Gly41AlafsTer70	H-2-Kb	8	28	0	TQHRYMAI	NA	NetMHC	259.42	NA	NA	48	0.188	338.138	NA	NA	NA	259.42	NA	273.8	NA	443.3431473	NA	402.476011	M2	-0.614285714	-0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.207	48	0	0	NA	6qB2.1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.869884581	sgMsh2	cell line
chr6	69283934	69283934	TA	T	ENSMUST00000103349.1	NA	ENSMUSG00000076548	FS	Y/X	70	Igkv4-69	ENSMUST00000103349.1:c.208del	ENSMUSP00000100150.1:p.Tyr70MetfsTer26	H-2-Kb	8	25	0	VAVGLGPL	NA	NetMHC	277.12	NA	NA	421	0.173	319.498	NA	NA	NA	277.12	NA	307.3	NA	344.9371732	NA	331.6958211	M2	1.6	1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1734	421	0	0	NA	6qC1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.728685924	sgMsh2	cell line
chr6	72515320	72515320	A	G	ENSMUST00000162561.8	1	ENSMUSG00000052631	missense	V/A	181	Sh2d6	ENSMUST00000162561.8:c.542T>C	ENSMUSP00000124673.2:p.Val181Ala	H-2-Kb	8	5	7	QPFTLAAL	QPFTLAVL	SMM	136.691	321.914	2.355	51	0.098	392.013	1659.23	4.233	2868.95	584.16	4165.5	2841.1	321.9141004	136.691025	449.5106648	199.8664966	M2	1.671428571	1.671428571	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.12	51	0	0	NA	6qC1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.504280916	sgMsh2	cell line
chr6	38395159	38395159	A	G	ENSMUST00000162554.7	1	ENSMUSG00000056832	missense	N/S	228	Ttc26	ENSMUST00000162554.7:c.683A>G	ENSMUSP00000124369.1:p.Asn228Ser	H-2-Kb	8	8	4	KACSHFRL	KACNHFRL	SMMPMBEC	238.089	262.869	1.104	149	0.188	424.535	436.945	1.029	611.02	603.18	792.8	636.8	253.9451951	245.8895091	262.8693795	238.0893668	M2	0.342857143	0.342857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.183	149	13	3	0.230769231	6qB1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.769028397	sgMsh2	cell line
chr6	30815960	30815960	A	G	ENSMUST00000048774.12	1	ENSMUSG00000025607	missense	V/A	480	Copg2	ENSMUST00000048774.12:c.1439T>C	ENSMUSP00000038368.6:p.Val480Ala	H-2-Kb	8	4	8	IRFIFNRA	IRFIFNRV	SMMPMBEC	232.135	48.277	0.208	120	0.083	482.306	47.673	0.099	40.71	683.59	149.1	1240.7	47.06954498	281.0217928	48.27696948	232.1346655	M2	-0.085714286	0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.091	120	115	12	0.104347826	6qA3.3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.382413028	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	9	3	9	LVLVSYTRL	LVLVSYTRI	NetMHC	46.33	202.94	4.38	162	0.185	99.281	285.444	2.875	202.94	46.33	207.6	48.9	371.6293451	149.6614677	363.2871195	157.1267038	M2	0.642857143	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.185	162	0	0	NA	6qB2.1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.777433079	sgMsh2	cell line
chr6	41394716	41394716	A	G	ENSMUST00000049079.8	1	ENSMUSG00000058119	missense	N/S	32	Gm5771	ENSMUST00000049079.8:c.95A>G	ENSMUSP00000039684.7:p.Asn32Ser	H-2-Kb	9	11	1	SSVPYQVSL	NSVPYQVSL	NetMHCpan	55	427.2	7.767	418	0.134	192.657	1089.876	5.657	863.77	57.03	427.2	55	1486.312054	344.4371603	1315.982154	328.2842143	M2	0.714285714	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.14	418	0	0	NA	6qB1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.588327736	sgMsh2	cell line
chr6	57646216	57646216	A	G	ENSMUST00000031817.9	1	ENSMUSG00000029798	missense	I/M	601	Herc6	ENSMUST00000031817.9:c.1803A>G	ENSMUSP00000031817.8:p.Ile601Met	H-2-Kb	9	8	4	RMFMRHNDL	RMFIRHNDL	NetMHCpan	84.7	119.9	1.416	135	0.193	89.64	112.82	1.259	106.21	86.97	119.9	84.7	119.4290561	116.1742828	95.11521633	92.31026548	M2	-0.885714286	-0.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.194	135	4	0	0	6qB3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.815254148	sgMsh2	cell line
chr6	35280331	35280331	T	C	ENSMUST00000031868.4	1	ENSMUSG00000029843	missense	I/V	291	Slc13a4	ENSMUST00000031868.4:c.871A>G	ENSMUSP00000031868.4:p.Ile291Val	H-2-Kb	9	8	4	TSLVFLEHF	TSLIFLEHF	NetMHC	97.42	117.96	1.211	74	0.095	193.774	212.916	1.099	117.96	97.42	246.7	203	223.4138023	184.5482792	202.4184057	205.7074402	M2	1.528571429	1.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.106	74	0	0	NA	6qB1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.445448143	sgMsh2	cell line
chr6	40544466	40544466	T	G	ENSMUST00000215009.2	5	ENSMUSG00000068259	missense	N/T	171	Olfr461	ENSMUST00000215009.2:c.512A>C	ENSMUSP00000150632.1:p.Asn171Thr	H-2-Kb	9	5	7	LTFCKTTLL	LTFCKTNLL	NetMHCpan	112.3	203.9	1.816	237	0.025	175.136	194.68	1.112	235.84	173.16	203.9	112.3	177.0557356	192.8013187	185.4598909	177.1128208	M2	1.085714286	1.085714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.028	237	0	0	NA	6qB1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.117665547	sgMsh2	cell line
chr6	59003477	59003477	G	A	ENSMUST00000089860.11	1	ENSMUSG00000037709	missense	P/L	20	Fam13a	ENSMUST00000089860.11:c.59C>T	ENSMUSP00000087304.5:p.Pro20Leu	H-2-Kb	9	10	2	SLFYLSAHV	SPFYLSAHV	NetMHC	174.69	536.79	3.073	190	0.132	418.616	1523.201	3.639	536.79	174.69	1739.9	211.9	1306.501763	625.3310593	1871.759302	745.1607995	M2	1.042857143	1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.135	190	0	0	NA	6qB3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.567316031	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	9	4	8	VLVSYTRLL	VLVSYTRIL	NetMHCpan	118.1	254.3	2.153	162	0.185	338.726	712.479	2.103	683.46	204.18	254.3	118.1	741.4980274	473.271116	959.9530659	622.6586131	M2	0.642857143	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.185	162	0	0	NA	6qB2.1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.777433079	sgMsh2	cell line
chr6	108380923	108380923	A	T	ENSMUST00000032192.8	1	ENSMUSG00000030102	missense	K/M	521	Itpr1	ENSMUST00000032192.8:c.1562A>T	ENSMUSP00000032192.6:p.Lys521Met	H-2-Kb	9	9	3	IFMLLQAPF	IFKLLQAPF	NetMHC	243.96	1098.72	4.504	118	0.212	381.453	1088.97	2.855	1098.72	243.96	1897.8	649.4	1079.220037	368.2222268	940.2644145	394.6844353	M2	1.285714286	2.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.225	118	25	6	0.24	6qE1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.945526718	sgMsh2	cell line
chr6	51575924	51575924	C	T	ENSMUST00000049152.14	1	ENSMUSG00000038301	missense	R/W	16	Snx10	ENSMUST00000049152.14:c.46C>T	ENSMUSP00000044165.8:p.Arg16Trp	H-2-Kb	9	7	5	SVWVWDPRI	SVWVRDPRI	NetMHC	247.53	483.94	1.955	134	0.201	414.729	406.437	0.98	483.94	247.53	763.9	753.2	328.9349344	406.5462879	312.0685478	422.9119919	M2	-0.385714286	0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.187	134	153	36	0.235294118	6qB3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.785837761	sgMsh2	cell line
chr6	57258876	57258876	T	C	ENSMUST00000228297.1	NA	ENSMUSG00000115199	missense	V/A	243	Vmn1r15	ENSMUST00000228297.1:c.728T>C	ENSMUSP00000154252.1:p.Val243Ala	H-2-Kb	9	5	7	FVVMYWADF	FVVMYWVDF	NetMHC	306.14	761.72	2.488	269	0.23	379.005	706.007	1.863	761.72	306.14	3331.3	836.6	650.2943789	450.9309038	416.1500968	307.0789168	M2	0.714285714	1.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.222	269	0	0	NA	6qB3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.932919695	sgMsh2	cell line
chr6	42286884	42286884	TG	T	ENSMUST00000031894.12	1	ENSMUSG00000029862	FS	G/X	40	Clcn1	ENSMUST00000031894.12:c.122del	ENSMUSP00000031894.6:p.Gly41AlafsTer70	H-2-Kb	9	60	0	TAWMRTTIL	NA	NetMHCpan	157.5	NA	NA	48	0.188	221.615	NA	NA	NA	328.86	NA	157.5	NA	251.2522734	NA	191.9773533	M2	0.485714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.207	48	0	0	NA	6qB2.1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.869884581	sgMsh2	cell line
chr6	53819299	53819299	G	A	ENSMUST00000127748.4	NA	ENSMUSG00000043496	missense	L/F	313	Tril	ENSMUST00000127748.4:c.937C>T	ENSMUSP00000116056.2:p.Leu313Phe	H-2-Kb	9	6	6	LSGNEFSAL	LSGNELSAL	NetMHC	346.28	3214.19	9.282	49	0.265	494.493	2182.641	4.414	3214.19	346.28	5516.3	892.1	1151.091906	517.7379503	1104.714362	471.2485208	M2	0.028571429	0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.256	49	0	0	NA	6qB3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr6	57258876	57258876	T	C	ENSMUST00000228297.1	NA	ENSMUSG00000115199	missense	V/A	243	Vmn1r15	ENSMUST00000228297.1:c.728T>C	ENSMUSP00000154252.1:p.Val243Ala	H-2-Kb	9	7	5	VMYWADFII	VMYWVDFII	SMM	154.565	218.328	1.413	269	0.23	312.379	430.03	1.377	602.28	395.01	1029	537.3	218.3282833	154.5645878	257.7804634	229.7470798	M2	1.128571429	1.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.222	269	0	0	NA	6qB3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.932919695	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	9	6	6	VSYTRLLVA	VSYTRILVA	NetMHCpan	129.9	163.6	1.259	162	0.185	176.155	270.535	1.536	712.71	415.25	163.6	129.9	323.6756285	203.287184	217.3952246	149.021867	M2	1.014285714	1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.185	162	0	0	NA	6qB2.1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.777433079	sgMsh2	cell line
chr6	123851989	123851989	A	G	ENSMUST00000162046.2	1	ENSMUSG00000094672	missense	F/L	109	Vmn2r25	ENSMUST00000162046.2:c.325T>C	ENSMUSP00000124342.1:p.Phe109Leu	H-2-Db	9	8	4	FFLLNVNFI	FFLFNVNFI	SMM	60.9	90.912	1.493	212	0.132	86.009	125.004	1.453	135.57	98.47	414.6	361.4	90.91174628	60.90037965	114.4379317	73.54785311	M2	1.728571429	1.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.128	212	0	0	NA	6qF2	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.537899644	sgMsh2	cell line
chr6	115490061	115490061	A	G	ENSMUST00000000450.4	1	ENSMUSG00000000440	missense	K/E	462	Pparg	ENSMUST00000000450.4:c.1384A>G	ENSMUSP00000000450.3:p.Lys462Glu	H-2-Kb	8	5	7	SSQLFAEV	SSQLFAKV	NetMHC	11.08	10.22	0.922	98	0.143	49.939	38.967	0.78	10.22	11.08	37.5	46.7	40.43337559	53.17897962	44.8476819	64.97405923	M2	0.685714286	0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.138	98	313	45	0.143769968	6qE3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.579923054	sgMsh2	cell line
chr7	19643130	19643130	A	C	ENSMUST00000055242.10	1	ENSMUSG00000002981	missense	F/V	170	Clptm1	ENSMUST00000055242.10:c.508T>G	ENSMUSP00000051293.9:p.Phe170Val	H-2-Kb	8	4	8	SIYIHVYV	SIYIHVYF	NetMHC	15.47	62.57	4.045	108	0.204	41.881	121.629	2.904	62.57	15.47	80.8	57.4	162.4575876	35.70590129	166.6249377	48.05515695	M2	1.657142857	1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.201	108	217	53	0.244239631	7qA3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.844670535	sgMsh2	cell line
chr6	134451069	134451069	T	C	ENSMUST00000032322.14	1	ENSMUSG00000030201	missense	Y/C	1520	Lrp6	ENSMUST00000032322.14:c.4559A>G	ENSMUSP00000032322.8:p.Tyr1520Cys	H-2-Kb	8	4	8	RSYSYRPC	RSYSYRPY	NetMHC	22.95	107.06	4.665	64	0.125	38.31	109.727	2.864	107.06	22.95	418.8	63.3	112.3931906	35.05419514	72.90209351	41.56616909	M2	-1.114285714	-1.114285714	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.15	64	76	11	0.144736842	6qG1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.630351145	sgMsh2	cell line
chr6	132755465	132755465	C	T	ENSMUST00000076150.2	NA	ENSMUSG00000060412	missense	L/F	246	Tas2r124	ENSMUST00000076150.2:c.736C>T	ENSMUSP00000075509.2:p.Leu246Phe	H-2-Kb	8	5	7	TIYFLSFL	TIYFLSLL	NetMHCpan	17.1	14.2	0.83	147	0.15	27.12	33.393	1.231	23.56	25.55	14.2	17.1	43.22549746	28.6906244	50.08872766	34.97357273	M2	2.228571429	2.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.151	147	0	0	NA	6qG1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.634553486	sgMsh2	cell line
chr7	6461136	6461136	T	C	ENSMUST00000214301.2	5	ENSMUSG00000048620	missense	V/A	209	Olfr1336	ENSMUST00000214301.2:c.626T>C	ENSMUSP00000150162.1:p.Val209Ala	H-2-Kb	8	10	2	IAILWGSL	IVILWGSL	NetMHCpan	26.7	38.1	1.427	265	0.219	48.129	52.985	1.101	49.64	35.34	38.1	26.7	82.36448742	81.04757034	56.33003227	60.91720937	M2	1.685714286	1.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.221	265	0	0	NA	7qA1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.928717354	sgMsh2	cell line
chr6	123851989	123851989	A	G	ENSMUST00000162046.2	1	ENSMUSG00000094672	missense	F/L	109	Vmn2r25	ENSMUST00000162046.2:c.325T>C	ENSMUSP00000124342.1:p.Phe109Leu	H-2-Kb	8	4	8	KSLGFFLL	KSLGFFLF	NetMHCpan	29.7	299.8	10.094	212	0.132	44.28	697.658	15.756	748.56	38.93	299.8	29.7	806.7519058	49.62951144	646.7553055	51.49202839	M2	2.257142857	2.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.128	212	0	0	NA	6qF2	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.537899644	sgMsh2	cell line
chr6	126534398	126534398	T	C	ENSMUST00000060972.4	NA	ENSMUSG00000045534	missense	I/V	256	Kcna5	ENSMUST00000060972.4:c.766A>G	ENSMUSP00000055673.3:p.Ile256Val	H-2-Kb	8	8	4	ISIVTFCL	ISIITFCL	NetMHC	52.88	64.85	1.226	176	0.142	141.597	162.48	1.147	64.85	52.88	110.8	103	269.6124854	248.1646968	214.1608096	180.1938647	M2	2.328571429	2.428571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.156	176	0	0	NA	6qF3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.655565191	sgMsh2	cell line
chr6	141532679	141532679	A	G	ENSMUST00000032362.11	1	ENSMUSG00000030235	missense	K/R	56	Slco1c1	ENSMUST00000032362.11:c.167A>G	ENSMUSP00000032362.9:p.Lys56Arg	H-2-Kb	8	4	8	LSFVYFAR	LSFVYFAK	NetMHC	71.6	273.33	3.817	118	0.229	97.337	165.283	1.698	273.33	71.6	241.7	126.8	88.86689373	86.84403626	56.4598864	107.830098	M2	0.714285714	1.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.217	118	0	0	NA	6qG2	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.91190799	sgMsh2	cell line
chr6	115617607	115617607	T	C	ENSMUST00000000449.8	1	ENSMUSG00000000439	missense	V/A	376	Mkrn2	ENSMUST00000000449.8:c.1127T>C	ENSMUSP00000000449.7:p.Val376Ala	H-2-Kb	8	6	6	RFFNSARL	RFFNSVRL	SMM	46.746	135.126	2.891	99	0.192	67.97	216.358	3.183	259.04	75.72	339.4	185.1	135.1263357	46.74552051	173.6760767	60.21989584	M2	0.342857143	0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.198	99	84	9	0.107142857	6qE3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.832063512	sgMsh2	cell line
chr6	114302629	114302629	A	G	ENSMUST00000032454.7	1	ENSMUSG00000030310	missense	K/R	123	Slc6a1	ENSMUST00000032454.7:c.368A>G	ENSMUSP00000032454.5:p.Lys123Arg	H-2-Kb	8	6	6	LAPMFRGV	LAPMFKGV	NetMHC	85.05	307.58	3.616	139	0.158	326.028	633.35	1.943	307.58	85.05	408.2	184.6	1126.522836	545.4312289	858.499408	467.4552051	M2	0.6	0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.158	139	0	0	NA	6qE3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.663969873	sgMsh2	cell line
chr6	126534398	126534398	T	C	ENSMUST00000060972.4	NA	ENSMUSG00000045534	missense	I/V	256	Kcna5	ENSMUST00000060972.4:c.766A>G	ENSMUSP00000055673.3:p.Ile256Val	H-2-Kb	8	11	1	VTFCLETL	ITFCLETL	NetMHCpan	48.8	53.4	1.094	176	0.142	87.068	91.435	1.05	104.06	91.96	53.4	48.8	87.64759423	82.17505435	95.22259222	97.66523514	M2	1.142857143	1.2	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.156	176	0	0	NA	6qF3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.655565191	sgMsh2	cell line
chr6	141532679	141532679	A	G	ENSMUST00000032362.11	1	ENSMUSG00000030235	missense	K/R	56	Slco1c1	ENSMUST00000032362.11:c.167A>G	ENSMUSP00000032362.9:p.Lys56Arg	H-2-Kb	8	5	7	SFVYFARA	SFVYFAKA	NetMHC	104.42	421.4	4.036	118	0.229	172.62	538.576	3.12	421.4	104.42	215.7	105.5	804.8964279	281.6696149	655.752568	239.7397234	M2	1.085714286	1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.217	118	0	0	NA	6qG2	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.91190799	sgMsh2	cell line
chr6	141532679	141532679	A	G	ENSMUST00000032362.11	1	ENSMUSG00000030235	missense	K/R	56	Slco1c1	ENSMUST00000032362.11:c.167A>G	ENSMUSP00000032362.9:p.Lys56Arg	H-2-Kb	8	6	6	FVYFARAL	FVYFAKAL	NetMHCpan	53.9	100.9	1.872	118	0.229	100.957	211.274	2.093	281	106.91	100.9	53.9	196.218522	95.00358634	226.3288934	123.2366829	M2	1.228571429	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.217	118	0	0	NA	6qG2	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.91190799	sgMsh2	cell line
chr6	124908510	124908510	CG	C	ENSMUST00000032217.1	1	ENSMUSG00000030124	FS	P/X	302	Lag3	ENSMUST00000032217.1:c.906del	ENSMUSP00000032217.1:p.Val303TrpfsTer45	H-2-Kb	8	16	0	VAILPFTL	NA	NetMHC	108.05	NA	NA	68	0.221	209.178	NA	NA	NA	108.05	NA	108.8	NA	309.5565516	NA	376.4783444	M2	2.057142857	2.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.223	68	0	0	NA	6qF2	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.937122036	sgMsh2	cell line
chr7	4469203	4469203	GA	G	ENSMUST00000163893.7	1	ENSMUSG00000006154	FS	R/X	22	Eps8l1	ENSMUST00000163893.7:c.69del	ENSMUSP00000125840.1:p.Lys23AsnfsTer56	H-2-Kb	8	6	7	SIYEQRNV	SIYEQRKR	SMM	80.305	2021.808	25.177	163	0.264	140.518	10629.403	75.645	16431.11	121.91	19443.2	292.4	2021.808416	80.30452175	4827.696948	159.1255801	M2	-1.085714286	-1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.255	163	0	0	NA	7qA1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr6	134451076	134451076	T	C	ENSMUST00000032322.14	1	ENSMUSG00000030201	missense	R/G	1518	Lrp6	ENSMUST00000032322.14:c.4552A>G	ENSMUSP00000032322.8:p.Arg1518Gly	H-2-Kb	8	6	6	RSYSYGPY	RSYSYRPY	SMMPMBEC	72.902	72.902	1	62	0.113	122.156	109.727	0.898	107.06	123.88	418.8	436.7	112.3931906	120.4314735	72.90209351	72.90209351	M2	-1.071428571	-1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.136	62	74	9	0.121621622	6qG1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.571518372	sgMsh2	cell line
chr6	134451069	134451069	T	C	ENSMUST00000032322.14	1	ENSMUSG00000030201	missense	Y/C	1520	Lrp6	ENSMUST00000032322.14:c.4559A>G	ENSMUSP00000032322.8:p.Tyr1520Cys	H-2-Kb	8	11	1	CSYRHFAP	YSYRHFAP	NetMHC	134.9	77.72	0.576	64	0.125	195.012	134.543	0.69	77.72	134.9	80.4	161.6	188.68614	228.4230889	247.5939338	382.5956254	M2	-0.971428571	-0.385714286	TRUE	FALSE	TRUE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.15	64	76	11	0.144736842	6qG1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.630351145	sgMsh2	cell line
chr6	116702006	116702006	GC	G	ENSMUST00000056623.12	1	ENSMUSG00000048108	FS	G/X	36	Tmem72	ENSMUST00000056623.12:c.108del	ENSMUSP00000057942.6:p.Arg37GlyfsTer77	H-2-Kb	8	80	0	STLSWSGM	NA	NetMHC	165.56	NA	NA	80	0.175	251.323	NA	NA	NA	165.56	NA	224.2	NA	308.8445912	NA	278.4453695	M2	0.3	0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.196	80	0	0	NA	6qE3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.82365883	sgMsh2	cell line
chr6	120385706	120385706	T	C	ENSMUST00000005108.9	5	ENSMUSG00000030180	missense	V/A	288	Kdm5a	ENSMUST00000005108.9:c.863T>C	ENSMUSP00000005108.7:p.Val288Ala	H-2-Kb	8	9	3	LSANFVDL	LSVNFVDL	NetMHCpan	203.2	84.8	0.417	214	0.112	219.56	105.745	0.482	51.24	210.17	84.8	203.2	154.0777756	228.9496585	126.6893185	245.8895091	M2	0.685714286	0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.125	214	162	18	0.111111111	6qF1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.525292621	sgMsh2	cell line
chr6	123815817	123815817	T	C	ENSMUST00000075095.6	5	ENSMUSG00000072780	missense	M/T	701	Vmn2r24	ENSMUST00000075095.6:c.2102T>C	ENSMUSP00000074602.5:p.Met701Thr	H-2-Kb	8	6	6	QMWMVTRL	QMWMVMRL	NetMHC	249.67	165.69	0.664	540	0.159	456.149	439.641	0.964	165.69	249.67	358.4	310.1	520.8827797	666.4076901	533.0156983	602.1989584	M2	0.814285714	0.814285714	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.156	540	0	0	NA	6qF2	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.655565191	sgMsh2	cell line
chr7	4242170	4242170	A	T	ENSMUST00000117550.1	1	ENSMUSG00000070873	missense	H/L	271	Lilra5	ENSMUST00000117550.1:c.812A>T	ENSMUSP00000113091.1:p.His271Leu	H-2-Kb	8	4	8	VLLFEAQL	VLLFEAQH	NetMHCpan	179.2	23345.8	130.278	91	0.253	295.154	24093.76	81.631	24841.72	365	23345.8	179.2	43126.08157	358.7071224	10017.05365	231.6007706	M2	1.285714286	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.276	91	1	0	0	7qA1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr6	125980155	125980155	A	G	ENSMUST00000160496.7	1	ENSMUSG00000038115	missense	K/R	629	Ano2	ENSMUST00000160496.7:c.1886A>G	ENSMUSP00000125303.1:p.Lys629Arg	H-2-Kb	8	6	6	KAFLLRFV	KAFLLKFV	NetMHCpan	272.4	547.6	2.01	254	0.11	351.17	682.716	1.944	1229.78	480.77	547.6	272.4	681.9303192	330.1718172	683.502331	372.1688324	M2	2.1	2.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.115	254	0	0	NA	6qF3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.483269211	sgMsh2	cell line
chr7	18180302	18180302	GA	G	ENSMUST00000152973.1	1	ENSMUSG00000066756	FS	K/X	134	Igfl3	ENSMUST00000152973.1:c.406del	ENSMUSP00000123628.1:p.Ser136ValfsTer22	H-2-Kb	8	22	0	SSCKHQFL	NA	SMM	138.274	NA	NA	138	0.29	348.524	NA	NA	NA	521.36	NA	968.7	NA	138.2738324	NA	175.6871509	M2	-0.328571429	-0.328571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.288	138	0	0	NA	7qA2	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr6	119320562	119320562	A	G	ENSMUST00000068351.13	2	ENSMUSG00000055003	missense	S/P	173	Lrtm2	ENSMUST00000068351.13:c.517T>C	ENSMUSP00000063882.7:p.Ser173Pro	H-2-Kb	8	7	5	LSLRPNRL	LSLRSNRL	SMM	331.696	237.542	0.716	80	0.163	433.071	256.722	0.593	268.12	522.79	551.4	975	237.5417764	331.6958211	245.323979	343.3523309	M2	-1.042857143	-1.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.177	80	0	0	NA	6qF1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.743814352	sgMsh2	cell line
chr6	123851989	123851989	A	G	ENSMUST00000162046.2	1	ENSMUSG00000094672	missense	F/L	109	Vmn2r25	ENSMUST00000162046.2:c.325T>C	ENSMUSP00000124342.1:p.Phe109Leu	H-2-Kb	8	6	6	LGFFLLNV	LGFFLFNV	NetMHCpan	149.9	127.9	0.853	212	0.132	327.146	197.604	0.604	312.5	598.05	127.9	149.9	200.7890385	326.3923717	194.4195797	327.8989304	M2	1.928571429	1.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.128	212	0	0	NA	6qF2	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.537899644	sgMsh2	cell line
chr7	13028552	13028552	C	A	ENSMUST00000005705.7	1	ENSMUSG00000005566	missense	L/M	368	Trim28	ENSMUST00000005705.7:c.1102C>A	ENSMUSP00000005705.7:p.Leu368Met	H-2-Kb	8	9	3	KKMIYFQL	KKLIYFQL	SMMPMBEC	242.516	183.967	0.759	81	0.259	424.719	506.319	1.192	828.67	832.15	1033.4	533.4	183.9670312	316.0385059	183.9670312	242.5157786	M2	0.614285714	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.284	81	476	126	0.264705882	7qA1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr6	124908510	124908510	CG	C	ENSMUST00000032217.1	1	ENSMUSG00000030124	FS	P/X	302	Lag3	ENSMUST00000032217.1:c.906del	ENSMUSP00000032217.1:p.Val303TrpfsTer45	H-2-Kb	8	24	0	RLWVWHRL	NA	SMMPMBEC	207.367	NA	NA	68	0.221	336.204	NA	NA	NA	1111.14	NA	304.5	NA	367.908651	NA	207.3671696	M2	0.328571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.223	68	0	0	NA	6qF2	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.937122036	sgMsh2	cell line
chr6	141532679	141532679	A	G	ENSMUST00000032362.11	1	ENSMUSG00000030235	missense	K/R	56	Slco1c1	ENSMUST00000032362.11:c.167A>G	ENSMUSP00000032362.9:p.Lys56Arg	H-2-Kb	9	4	8	LSFVYFARA	LSFVYFAKA	NetMHC	8.07	18.23	2.259	118	0.229	41.355	63.038	1.524	18.23	8.07	19.6	12.2	162.2220929	88.94263671	106.4755765	70.50988397	M2	1.085714286	1.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.217	118	0	0	NA	6qG2	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.91190799	sgMsh2	cell line
chr6	134520435	134520435	A	C	ENSMUST00000032322.14	1	ENSMUSG00000030201	missense	L/R	203	Lrp6	ENSMUST00000032322.14:c.608T>G	ENSMUSP00000032322.8:p.Leu203Arg	H-2-Kb	9	11	1	RNFIHKSNL	LNFIHKSNL	NetMHCpan	24.8	15.1	0.609	161	0.13	96.035	60.832	0.633	39.77	43.78	15.1	24.8	87.5205423	148.2893631	81.893607	152.4930322	M2	-0.042857143	-0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.136	161	119	20	0.168067227	6qG1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.571518372	sgMsh2	cell line
chr6	132755465	132755465	C	T	ENSMUST00000076150.2	NA	ENSMUSG00000060412	missense	L/F	246	Tas2r124	ENSMUST00000076150.2:c.736C>T	ENSMUSP00000075509.2:p.Leu246Phe	H-2-Kb	9	4	8	YTIYFLSFL	YTIYFLSLL	NetMHC	45.97	33.27	0.724	147	0.15	127.206	76.764	0.603	33.27	45.97	50.7	66	102.8276712	188.4126249	141.6609011	235.640535	M2	2.228571429	2.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.151	147	0	0	NA	6qG1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.634553486	sgMsh2	cell line
chr6	116022230	116022230	C	A	ENSMUST00000088896.9	1	ENSMUSG00000030126	missense	V/L	603	Tmcc1	ENSMUST00000088896.9:c.1807G>T	ENSMUSP00000086285.3:p.Val603Leu	H-2-Kb	9	3	9	VLLVFVSTL	VLLVFVSTV	NetMHCpan	45.4	257.3	5.667	722	0.033	151.246	412.494	2.727	199.91	50.08	257.3	45.4	567.6883738	252.4120012	637.1621954	284.6098982	M2	2.471428571	3.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.039	722	43	0	0	6qE3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.163891298	sgMsh2	cell line
chr7	6461136	6461136	T	C	ENSMUST00000214301.2	5	ENSMUSG00000048620	missense	V/A	209	Olfr1336	ENSMUST00000214301.2:c.626T>C	ENSMUSP00000150162.1:p.Val209Ala	H-2-Kb	9	10	2	IAILWGSLL	IVILWGSLL	NetMHC	79.58	110.35	1.387	265	0.219	134.3	179.951	1.34	110.35	79.58	151.4	83.2	208.5018919	185.4001153	225.0349638	194.6480243	M2	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.221	265	0	0	NA	7qA1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.928717354	sgMsh2	cell line
chr6	124908510	124908510	CG	C	ENSMUST00000032217.1	1	ENSMUSG00000030124	FS	P/X	302	Lag3	ENSMUST00000032217.1:c.906del	ENSMUSP00000032217.1:p.Val303TrpfsTer45	H-2-Kb	9	17	0	AILPFTLRL	NA	NetMHCpan	45.3	NA	NA	68	0.221	185.425	NA	NA	NA	88.29	NA	45.3	NA	282.5595563	NA	326.7758854	M2	1.057142857	2.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.223	68	0	0	NA	6qF2	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.937122036	sgMsh2	cell line
chr6	141532679	141532679	A	G	ENSMUST00000032362.11	1	ENSMUSG00000030235	missense	K/R	56	Slco1c1	ENSMUST00000032362.11:c.167A>G	ENSMUSP00000032362.9:p.Lys56Arg	H-2-Kb	9	5	7	SFVYFARAL	SFVYFAKAL	NetMHC	90.76	210.98	2.325	118	0.229	303.576	377.92	1.245	210.98	90.76	211.2	119.5	544.6405843	487.6519891	802.1396792	782.0778752	M2	1.228571429	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.217	118	0	0	NA	6qG2	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.91190799	sgMsh2	cell line
chr6	134451069	134451069	T	C	ENSMUST00000032322.14	1	ENSMUSG00000030201	missense	Y/C	1520	Lrp6	ENSMUST00000032322.14:c.4559A>G	ENSMUSP00000032322.8:p.Tyr1520Cys	H-2-Kb	9	11	1	CSYRHFAPP	YSYRHFAPP	SMM	43.965	47.985	1.091	64	0.125	101.949	75.581	0.741	74.91	111.8	101.8	153.6	47.9854973	43.96529586	76.25178243	92.09795777	M2	-1.085714286	-0.385714286	TRUE	FALSE	TRUE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.15	64	76	11	0.144736842	6qG1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.630351145	sgMsh2	cell line
chr6	115617607	115617607	T	C	ENSMUST00000000449.8	1	ENSMUSG00000000439	missense	V/A	376	Mkrn2	ENSMUST00000000449.8:c.1127T>C	ENSMUSP00000000449.7:p.Val376Ala	H-2-Kb	9	5	7	VRFFNSARL	VRFFNSVRL	NetMHC	132.8	243.55	1.834	99	0.192	175.695	250.962	1.428	243.55	132.8	387	245.5	231.7981684	160.7348318	258.3747087	190.6557905	M2	0.342857143	0.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.198	99	84	9	0.107142857	6qE3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.832063512	sgMsh2	cell line
chr7	4242170	4242170	A	T	ENSMUST00000117550.1	1	ENSMUSG00000070873	missense	H/L	271	Lilra5	ENSMUST00000117550.1:c.812A>T	ENSMUSP00000113091.1:p.His271Leu	H-2-Kb	9	3	9	GVLLFEAQL	GVLLFEAQH	NetMHC	142.43	16326.9	114.631	91	0.253	219.687	9512.661	43.301	16326.9	142.43	26282.3	380.7	2698.422814	224.9624328	2183.986754	214.4124503	M2	1.285714286	1.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.276	91	1	0	0	7qA1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr6	132755465	132755465	C	T	ENSMUST00000076150.2	NA	ENSMUSG00000060412	missense	L/F	246	Tas2r124	ENSMUST00000076150.2:c.736C>T	ENSMUSP00000075509.2:p.Leu246Phe	H-2-Kb	9	5	7	TIYFLSFLI	TIYFLSLLI	SMM	227.044	253.577	1.117	147	0.15	313.471	337.294	1.076	425.72	332.33	374.5	358.1	253.577082	227.0439846	300.0889473	294.6117067	M2	2.228571429	2.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.151	147	0	0	NA	6qG1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.634553486	sgMsh2	cell line
chr6	134484391	134484391	T	G	ENSMUST00000032322.14	1	ENSMUSG00000030201	missense	E/A	701	Lrp6	ENSMUST00000032322.14:c.2102A>C	ENSMUSP00000032322.8:p.Glu701Ala	H-2-Kb	9	4	8	SALEHVVAF	SALEHVVEF	NetMHC	346.5	552.55	1.595	174	0.092	444.167	549.223	1.237	552.55	346.5	572.2	399.4	545.8961105	515.3591605	539.8212792	488.9337312	M2	1.442857143	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.105	174	139	14	0.100719424	6qG1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.441245802	sgMsh2	cell line
chr6	123815817	123815817	T	C	ENSMUST00000075095.6	5	ENSMUSG00000072780	missense	M/T	701	Vmn2r24	ENSMUST00000075095.6:c.2102T>C	ENSMUSP00000074602.5:p.Met701Thr	H-2-Kb	9	8	4	WMVTRLSNV	WMVMRLSNV	SMMPMBEC	371.749	308.496	0.83	540	0.159	393.346	326.071	0.829	273.51	374.49	1055.2	1159.9	343.6449768	412.2019102	308.4963287	371.7491635	M2	0.385714286	0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.156	540	0	0	NA	6qF2	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.655565191	sgMsh2	cell line
chr6	113578387	113578387	T	A	ENSMUST00000036340.11	1	ENSMUSG00000034023	missense	F/Y	1119	Fancd2	ENSMUST00000036340.11:c.3356T>A	ENSMUSP00000045667.5:p.Phe1119Tyr	H-2-Kb	9	3	9	QSFSYLQNY	QSFSYLQNF	SMM	108.67	62.389	0.574	185	0.178	297.381	61.045	0.205	32.08	374.85	59.7	1857.1	62.38928378	108.6700833	111.2371876	219.9125427	M2	-0.542857143	-0.471428571	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.186	185	12	1	0.083333333	6qE3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.78163542	sgMsh2	cell line
chr7	81101095	81101095	T	C	ENSMUST00000107348.1	1	ENSMUSG00000038763	missense	W/R	1538	Alpk3	ENSMUST00000107348.1:c.4612T>C	ENSMUSP00000102971.1:p.Trp1538Arg	H-2-Db	9	9	3	YQRTNGSFL	YQWTNGSFL	NetMHCpan	123.2	26.5	0.215	65	0.308	312.704	56.356	0.18	8.22	131.53	26.5	123.2	91.33137583	493.878363	86.21245256	572.2291797	M2	-0.471428571	-0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.297	65	0	0	NA	7qD3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr7	26611187	26611187	T	C	ENSMUST00000228367.1	NA	ENSMUSG00000091924	missense	M/V	298	Vmn1r185	ENSMUST00000228367.1:c.892A>G	ENSMUSP00000154816.1:p.Met298Val	H-2-Db	9	8	4	YSLVSRFNL	YSLMSRFNL	NetMHC	136.82	215.91	1.578	165	0.188	299.155	452.516	1.513	215.91	136.82	303	280.9	602.0325877	317.4095578	657.007005	372.8807814	M2	0.828571429	0.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.191	165	0	0	NA	7qA3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.802647125	sgMsh2	cell line
chr7	75610298	75610298	T	C	ENSMUST00000166315.6	5	ENSMUSG00000066406	missense	V/A	890	Akap13	ENSMUST00000166315.6:c.2669T>C	ENSMUSP00000129784.1:p.Val890Ala	H-2-Db	9	8	4	AALASDFTL	AALVSDFTL	NetMHC	178.78	109	0.61	156	0.237	209.324	125.966	0.602	109	178.78	175.4	258.9	114.9793899	202.5909309	136.9525112	216.0578251	M2	1.028571429	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	156	33	8	0.242424242	7qD1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.9539314	sgMsh2	cell line
chr7	25272796	25272796	A	G	ENSMUST00000169266.7	1	ENSMUSG00000005442	missense	I/V	651	Cic	ENSMUST00000169266.7:c.1951A>G	ENSMUSP00000132351.1:p.Ile651Val	H-2-Db	10	2	10	FSPINASPVV	FSPINASPVI	NetMHC	14.9	8.41	0.564	31	0.29	465.206	229.143	0.493	8.41	14.9	34.4	92.4	423.8869047	838.0115415	542.8376978	1013.141255	M2	1.257142857	1.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.303	31	24	6	0.25	7qA3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr7	66784798	66784798	T	C	ENSMUST00000066475.10	1	ENSMUSG00000030510	missense	W/R	216	Cers3	ENSMUST00000066475.10:c.646T>C	ENSMUSP00000069238.8:p.Trp216Arg	H-2-Kb	8	8	4	SQYRYYIL	SQYWYYIL	NetMHC	4.27	6.01	1.407	280	0.236	11.074	15.356	1.387	6.01	4.27	10.4	7.4	20.3114066	14.74823333	31.82291802	20.73671696	M2	-0.514285714	-0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.239	280	12	1	0.083333333	7qC	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr7	99667112	99667112	T	C	ENSMUST00000107088.7	1	ENSMUSG00000030737	missense	T/A	404	Slco2b1	ENSMUST00000107088.7:c.1210A>G	ENSMUSP00000102703.1:p.Thr404Ala	H-2-Kb	8	10	2	IAASFANM	ITASFANM	NetMHC	5.86	5.92	1.01	52	0.192	17.404	13.8	0.793	5.92	5.86	10.9	9	16.70090478	25.80714726	19.75786438	31.24208431	M2	0.828571429	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.199	52	0	0	NA	7qE1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.836265853	sgMsh2	cell line
chr7	28320255	28320255	A	G	ENSMUST00000209141.1	1	ENSMUSG00000003435	missense	F/L	497	Supt5	ENSMUST00000209141.1:c.1489T>C	ENSMUSP00000147164.1:p.Phe497Leu	H-2-Kb	8	11	1	LVILFSDL	FVILFSDL	NetMHCpan	33.8	63.7	1.885	99	0.182	68.106	75.272	1.105	40.58	34.18	63.7	33.8	93.70008827	130.2386842	86.84403626	102.0328459	M2	2.114285714	2.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.194	99	161	42	0.260869565	7qA3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.815254148	sgMsh2	cell line
chr7	58786559	58786559	AT	A	ENSMUST00000168747.2	1	ENSMUSG00000025324	FS	F/X	366	Atp10a	ENSMUST00000168747.2:c.1101del	ENSMUSP00000129811.1:p.Phe367LeufsTer3	H-2-Kb	8	5	8	TAAVYSFL	TAAVYSFF	NetMHCpan	49	440.4	8.988	62	0.29	79.762	1502.816	18.841	1682.67	64.52	440.4	49	1544.329616	95.00358634	1461.302072	116.3429308	M2	1.757142857	1.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.285	62	13	1	0.076923077	7qB5	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr7	62419972	62419972	TC	T	ENSMUST00000094340.3	NA	ENSMUSG00000070527	FS	E/X	24	Mkrn3	ENSMUST00000094340.3:c.70del	ENSMUSP00000091898.3:p.Glu24ArgfsTer36	H-2-Kb	8	11	1	RVCLFPPL	NA	SMMPMBEC	44.951	NA	NA	18	0.389	58.684	NA	NA	NA	65.4	NA	82.2	NA	51.96847826	NA	44.95106648	M2	1.985714286	1.985714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.42	18	0	0	NA	7qC	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	2	1	sgMsh2	cell line
chr7	102927910	102927910	T	A	ENSMUST00000215782.2	5	ENSMUSG00000073963	missense	I/N	94	Olfr572	ENSMUST00000215782.2:c.281T>A	ENSMUSP00000149174.1:p.Ile94Asn	H-2-Kb	8	6	6	FNYKFNTF	FNYKFITF	NetMHCpan	50.8	48.2	0.949	186	0.22	130.321	119.91	0.92	86.45	77.52	48.2	50.8	158.0301673	183.1217795	153.3698525	187.8192059	M2	-1.042857143	-1.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.216	186	0	0	NA	7qE3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.907705649	sgMsh2	cell line
chr7	28818636	28818636	AC	A	ENSMUST00000174477.7	1	ENSMUSG00000015165	FS	H/X	341	Hnrnpl	ENSMUST00000174477.7:c.1026del	ENSMUSP00000134734.1:p.Pro343GlnfsTer78	H-2-Kb	8	81	0	WSMAWINL	NA	SMMPMBEC	83.318	NA	NA	18	0.222	117.185	NA	NA	NA	121.77	NA	112.6	NA	126.6893185	NA	83.31822323	M2	0.971428571	0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.219	18	31	2	0.064516129	7qB1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.920312672	sgMsh2	cell line
chr7	103584362	103584362	A	G	ENSMUST00000216516.1	5	ENSMUSG00000073946	missense	I/M	113	Olfr617	ENSMUST00000216516.1:c.339A>G	ENSMUSP00000149045.1:p.Ile113Met	H-2-Kb	8	5	7	MFFLHFMF	MFFLHFIF	NetMHC	230.87	599.4	2.596	640	0.158	325.362	901.098	2.77	599.4	230.87	1588.2	1029.4	825.5435717	317.4972734	976.6523514	333.2268594	M2	1.957142857	1.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.161	640	0	0	NA	7qE3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.676576896	sgMsh2	cell line
chr7	26611187	26611187	T	C	ENSMUST00000228367.1	NA	ENSMUSG00000091924	missense	M/V	298	Vmn1r185	ENSMUST00000228367.1:c.892A>G	ENSMUSP00000154816.1:p.Met298Val	H-2-Kb	8	4	8	FMRSYSLV	FMRSYSLM	NetMHC	238.94	166.52	0.697	165	0.188	450.026	344.108	0.765	166.52	238.94	202.1	466.8	486.1160944	433.2514252	558.1359543	516.1072977	M2	0.357142857	0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.191	165	0	0	NA	7qA3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.802647125	sgMsh2	cell line
chr7	91940074	91940074	T	A	ENSMUST00000107196.9	1	ENSMUSG00000052572	missense	I/N	227	Dlg2	ENSMUST00000107196.9:c.680T>A	ENSMUSP00000102814.2:p.Ile227Asn	H-2-Kb	8	5	7	SIYVTKNI	SIYVTKII	NetMHC	242.01	2437.57	10.072	91	0.231	286.831	2390.198	8.333	2437.57	242.01	1637.8	259.8	2481.646968	364.5356443	2342.825811	313.8629122	M2	0.542857143	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.253	91	0	0	NA	7qE1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr7	100503182	100503182	A	G	ENSMUST00000207405.1	1	ENSMUSG00000030708	missense	M/T	309	Dnajb13	ENSMUST00000207405.1:c.926T>C	ENSMUSP00000147019.1:p.Met309Thr	H-2-Kb	8	13	2	QTLRQALL	QMLRQALL	SMM	286.906	520.883	1.816	49	0.306	461.754	706.441	1.53	350.19	416.82	892	1408.6	520.8827797	286.906244	911.4650073	506.6872779	M2	0.642857143	0.642857143	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.266	49	5	1	0.2	7qE2	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr7	28818636	28818636	AC	A	ENSMUST00000174477.7	1	ENSMUSG00000015165	FS	H/X	341	Hnrnpl	ENSMUST00000174477.7:c.1026del	ENSMUSP00000134734.1:p.Pro343GlnfsTer78	H-2-Kb	8	71	0	MAPTLTAL	NA	NetMHC	441.14	NA	NA	18	0.222	466.084	NA	NA	NA	441.14	NA	474.3	NA	457.867692	NA	595.3056439	M2	1.171428571	1.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.219	18	31	2	0.064516129	7qB1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.920312672	sgMsh2	cell line
chr7	62419972	62419972	TC	T	ENSMUST00000094340.3	NA	ENSMUSG00000070527	FS	E/X	24	Mkrn3	ENSMUST00000094340.3:c.70del	ENSMUSP00000091898.3:p.Glu24ArgfsTer36	H-2-Kb	8	19	0	LSLRLLEL	NA	NetMHCpan	293.7	NA	NA	18	0.389	477.609	NA	NA	NA	496.72	NA	293.7	NA	496.2951144	NA	458.9231861	M2	0.914285714	0.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.42	18	0	0	NA	7qC	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	2	1	sgMsh2	cell line
chr7	56729688	56729688	A	G	ENSMUST00000068911.12	1	ENSMUSG00000055026	missense	V/A	322	Gabrg3	ENSMUST00000068911.12:c.965T>C	ENSMUSP00000067632.6:p.Val322Ala	H-2-Kb	8	9	3	VTACFLFV	VTVCFLFV	SMM	141.495	95.223	0.673	116	0.241	356.569	180.348	0.506	245.42	845.85	392.1	489.4	95.22259222	141.4946437	115.2762924	223.738128	M2	2.457142857	2.457142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.233	116	0	0	NA	7qB5	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.979145446	sgMsh2	cell line
chr7	86811337	86811337	G	A	ENSMUST00000164996.1	5	ENSMUSG00000090949	missense	V/I	624	Vmn2r77	ENSMUST00000164996.1:c.1870G>A	ENSMUSP00000129540.1:p.Val624Ile	H-2-Kb	8	6	6	ETLSYILL	ETLSYVLL	SMMPMBEC	299.737	258.071	0.861	250	0.268	438.719	380.319	0.867	864.89	988.22	444.6	532.5	316.0385059	344.9371732	258.0714726	299.7367541	M2	1.871428571	1.871428571	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.28	250	0	0	NA	7qD3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr7	103212255	103212255	G	T	ENSMUST00000098206.1	NA	ENSMUSG00000073955	missense	A/S	132	Olfr593	ENSMUST00000098206.1:c.394G>T	ENSMUSP00000095807.1:p.Ala132Ser	H-2-Kb	9	10	2	MSFDRYVAI	MAFDRYVAI	NetMHCpan	12.3	20	1.626	306	0.275	33.946	48.846	1.439	47.08	27.69	20	12.3	63.11171763	52.01277201	50.61159219	40.20221668	M2	0.571428571	0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.279	306	0	0	NA	7qE3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr7	86811337	86811337	G	A	ENSMUST00000164996.1	5	ENSMUSG00000090949	missense	V/I	624	Vmn2r77	ENSMUST00000164996.1:c.1870G>A	ENSMUSP00000129540.1:p.Val624Ile	H-2-Kb	9	8	4	LSYILLTSL	LSYVLLTSL	NetMHCpan	26.5	23.3	0.879	250	0.268	55.636	50.423	0.906	24.09	28.24	23.3	26.5	76.75558746	92.92017092	84.382036	83.03286055	M2	1.871428571	1.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.28	250	0	0	NA	7qD3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr7	26611187	26611187	T	C	ENSMUST00000228367.1	NA	ENSMUSG00000091924	missense	M/V	298	Vmn1r185	ENSMUST00000228367.1:c.892A>G	ENSMUSP00000154816.1:p.Met298Val	H-2-Kb	9	11	1	VSRFNLAHL	MSRFNLAHL	NetMHC	34.25	88.62	2.587	165	0.188	91.603	217.283	2.372	88.62	34.25	130.4	64.6	304.1655332	118.6069123	327.5291816	126.5464598	M2	0.142857143	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.191	165	0	0	NA	7qA3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.802647125	sgMsh2	cell line
chr7	25630422	25630422	G	T	ENSMUST00000205808.1	5	ENSMUSG00000060376	missense	P/H	92	Bckdha	ENSMUST00000205808.1:c.275C>A	ENSMUSP00000146018.1:p.Pro92His	H-2-Kb	9	10	5	RSWKHLSRL	RSWKPLSRL	NetMHCpan	40.3	284.5	7.06	33	0.212	90.509	379.431	4.192	202.73	43.85	284.5	40.3	474.3621186	146.9298381	571.8077009	137.1671136	M2	-0.814285714	-0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.243	33	113	37	0.327433628	7qA3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr7	99667112	99667112	T	C	ENSMUST00000107088.7	1	ENSMUSG00000030737	missense	T/A	404	Slco2b1	ENSMUST00000107088.7:c.1210A>G	ENSMUSP00000102703.1:p.Thr404Ala	H-2-Kb	9	10	2	IAASFANML	ITASFANML	NetMHC	49.5	59.95	1.211	52	0.192	106.089	142.925	1.347	59.95	49.5	72	56.9	213.850367	155.2780255	358.3026333	277.4917016	M2	1.114285714	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.199	52	0	0	NA	7qE1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.836265853	sgMsh2	cell line
chr7	99667112	99667112	T	C	ENSMUST00000107088.7	1	ENSMUSG00000030737	missense	T/A	404	Slco2b1	ENSMUST00000107088.7:c.1210A>G	ENSMUSP00000102703.1:p.Thr404Ala	H-2-Kb	9	9	3	SIAASFANM	SITASFANM	NetMHC	52.64	67.03	1.273	52	0.192	261.476	391.398	1.497	67.03	52.64	142.9	83.3	639.8968908	439.6529586	738.3291242	556.2243536	M2	0.828571429	1.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.199	52	0	0	NA	7qE1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.836265853	sgMsh2	cell line
chr7	103881482	103881482	T	C	ENSMUST00000216303.1	5	ENSMUSG00000058200	missense	I/V	254	Olfr66	ENSMUST00000216303.1:c.760A>G	ENSMUSP00000149058.1:p.Ile254Val	H-2-Kb	9	5	7	VFYITVVGL	VFYITVIGL	NetMHC	70.92	67.37	0.95	338	0.033	148.778	161.053	1.083	67.37	70.92	208.5	159.8	134.9304597	137.7558339	187.1759302	169.531342	M2	2.042857143	2.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.039	338	0	0	NA	7qE3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.163891298	sgMsh2	cell line
chr7	26611187	26611187	T	C	ENSMUST00000228367.1	NA	ENSMUSG00000091924	missense	M/V	298	Vmn1r185	ENSMUST00000228367.1:c.892A>G	ENSMUSP00000154816.1:p.Met298Val	H-2-Kb	9	3	9	VFMRSYSLV	VFMRSYSLM	NetMHC	86.79	66.95	0.771	165	0.188	195.423	101.978	0.522	66.95	86.79	103.7	265	100.2559138	171.4391481	132.8158787	219.4067579	M2	0.357142857	0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.191	165	0	0	NA	7qA3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.802647125	sgMsh2	cell line
chr7	86230157	86230157	G	T	ENSMUST00000165771.1	5	ENSMUSG00000091239	missense	L/I	312	Vmn2r76	ENSMUST00000165771.1:c.934C>A	ENSMUSP00000127309.1:p.Leu312Ile	H-2-Kb	9	11	1	IFNSFHGTL	LFNSFHGTL	NetMHC	90.6	323.06	3.566	117	0.214	213.074	517.132	2.427	323.06	90.6	536.4	171.4	497.86317	254.7475407	565.2622723	289.2344371	M2	-0.285714286	0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.21	117	0	0	NA	7qD3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.882491604	sgMsh2	cell line
chr7	103584362	103584362	A	G	ENSMUST00000216516.1	5	ENSMUSG00000073946	missense	I/M	113	Olfr617	ENSMUST00000216516.1:c.339A>G	ENSMUSP00000149045.1:p.Ile113Met	H-2-Kb	9	5	7	MFFLHFMFV	MFFLHFIFV	NetMHC	92.75	203.8	2.197	640	0.158	128.03	171.598	1.34	203.8	92.75	1144	493.5	118.8803295	115.3745446	139.3958999	140.6857143	M2	2.157142857	2.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.161	640	0	0	NA	7qE3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.676576896	sgMsh2	cell line
chr7	26611187	26611187	T	C	ENSMUST00000228367.1	NA	ENSMUSG00000091924	missense	M/V	298	Vmn1r185	ENSMUST00000228367.1:c.892A>G	ENSMUSP00000154816.1:p.Met298Val	H-2-Kb	9	6	6	RSYSLVSRF	RSYSLMSRF	NetMHCpan	141.6	108.4	0.766	165	0.188	189.696	134.173	0.707	111.27	145.45	108.4	141.6	157.0760603	233.9429705	198.2668013	302.8656361	M2	0.485714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.191	165	0	0	NA	7qA3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.802647125	sgMsh2	cell line
chr7	103881482	103881482	T	C	ENSMUST00000216303.1	5	ENSMUSG00000058200	missense	I/V	254	Olfr66	ENSMUST00000216303.1:c.760A>G	ENSMUSP00000149058.1:p.Ile254Val	H-2-Kb	9	11	1	VGLTFIHRF	IGLTFIHRF	NetMHCpan	94.1	95.1	1.011	338	0.033	247.54	321.447	1.299	193.89	156.04	95.1	94.1	528.5791156	359.0128555	449.0037829	339.0392667	M2	0.785714286	1.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.039	338	0	0	NA	7qE3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.163891298	sgMsh2	cell line
chr7	66784798	66784798	T	C	ENSMUST00000066475.10	1	ENSMUSG00000030510	missense	W/R	216	Cers3	ENSMUST00000066475.10:c.646T>C	ENSMUSP00000069238.8:p.Trp216Arg	H-2-Kb	9	8	4	SQYRYYILE	SQYWYYILE	SMM	92.493	70.325	0.76	280	0.236	160.502	195.895	1.221	314.3	217.43	396.3	364.7	70.32504197	92.49324152	77.49077422	103.5738214	M2	-0.514285714	-0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.239	280	12	1	0.083333333	7qC	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr7	44860083	44860083	A	T	ENSMUST00000003044.13	1	ENSMUSG00000002963	missense	I/F	214	Pnkp	ENSMUST00000003044.13:c.640A>T	ENSMUSP00000003044.7:p.Ile214Phe	H-2-Kb	9	10	2	VFFTNQMGI	VIFTNQMGI	NetMHC	224.67	173.98	0.774	137	0.285	495.62	287.013	0.579	173.98	224.67	171	466.3	400.0460623	524.9404026	441.8247089	598.7561676	M2	0.157142857	0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.308	137	82	21	0.256097561	7qB3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr7	103584362	103584362	A	G	ENSMUST00000216516.1	5	ENSMUSG00000073946	missense	I/M	113	Olfr617	ENSMUST00000216516.1:c.339A>G	ENSMUSP00000149045.1:p.Ile113Met	H-2-Kb	9	4	8	QMFFLHFMF	QMFFLHFIF	SMM	131.556	169.477	1.288	640	0.158	221.128	403.923	1.827	551.84	262.68	1121.6	700.9	169.4767004	131.5558	256.0059151	179.5767056	M2	1.957142857	1.957142857	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.161	640	0	0	NA	7qE3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.676576896	sgMsh2	cell line
chr7	55933103	55933103	G	A	ENSMUST00000119201.7	1	ENSMUSG00000030452	missense	A/V	298	Nipa2	ENSMUST00000119201.7:c.893C>T	ENSMUSP00000114020.1:p.Ala298Val	H-2-Kb	9	3	9	IVGIFLLHV	IVGIFLLHA	SMMPMBEC	293.934	1014.495	3.451	157	0.204	319.481	1799.346	5.632	2393.35	336.89	4122.3	831.1	1205.341196	302.0716724	1014.495208	293.9341186	M2	2.214285714	3.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.205	157	135	29	0.214814815	7qB5	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.861479899	sgMsh2	cell line
chr7	103584362	103584362	A	G	ENSMUST00000216516.1	5	ENSMUSG00000073946	missense	I/M	113	Olfr617	ENSMUST00000216516.1:c.339A>G	ENSMUSP00000149045.1:p.Ile113Met	H-2-Kb	9	3	9	SQMFFLHFM	SQMFFLHFI	NetMHCpan	56.9	97.8	1.719	640	0.158	446.426	835.617	1.872	716	386.9	97.8	56.9	955.2345013	505.9527957	1104.714362	647.5152482	M2	1.828571429	1.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.161	640	0	0	NA	7qE3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.676576896	sgMsh2	cell line
chr7	44254085	44254085	A	C	ENSMUST00000118216.7	5	ENSMUSG00000012777	missense	N/K	268	Acp4	ENSMUST00000118216.7:c.804T>G	ENSMUSP00000112922.2:p.Asn268Lys	H-2-Kb	9	7	5	AILSKFSRT	AILSNFSRT	NetMHC	418.06	803.44	1.922	43	0.116	445.515	906.399	2.034	803.44	418.06	3979.9	2331.4	857.254947	432.6233939	955.5424822	458.4056903	M2	-0.585714286	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.143	43	0	0	NA	7qB3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.600934759	sgMsh2	cell line
chr7	103584362	103584362	A	G	ENSMUST00000216516.1	5	ENSMUSG00000073946	missense	I/M	113	Olfr617	ENSMUST00000216516.1:c.339A>G	ENSMUSP00000149045.1:p.Ile113Met	H-2-Kb	9	10	2	FMFVAESAI	FIFVAESAI	SMM	309.108	692.006	2.239	640	0.158	470.276	955.533	2.032	860.92	433.27	1412.9	802.3	692.0062231	309.1078255	1050.146768	507.2826396	M2	1.542857143	1.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.161	640	0	0	NA	7qE3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.676576896	sgMsh2	cell line
chr7	45897436	45897436	C	T	ENSMUST00000069772.15	1	ENSMUSG00000002781	missense	L/F	9	Tmem143	ENSMUST00000069772.15:c.25C>T	ENSMUSP00000070405.7:p.Leu9Phe	H-2-Kb	9	1	9	MTVARWLRF	MTVARWLRL	SMMPMBEC	346.937	200.563	0.578	37	0.189	447.198	172.436	0.386	144.31	476.98	90.6	447.6	264.9171047	446.7967444	200.5626226	346.9365057	M2	0.385714286	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.203	37	17	2	0.117647059	7qB3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.853075217	sgMsh2	cell line
chr7	44254085	44254085	A	C	ENSMUST00000118216.7	5	ENSMUSG00000012777	missense	N/K	268	Acp4	ENSMUST00000118216.7:c.804T>G	ENSMUSP00000112922.2:p.Asn268Lys	H-2-Kb	9	10	2	SKFSRTQRL	SNFSRTQRL	SMM	201.888	42.965	0.213	43	0.116	379.864	47.397	0.125	51.83	504.31	22.5	880	42.96452354	201.8877649	57.8428922	255.4171179	M2	-1.057142857	-1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.143	43	0	0	NA	7qB3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.600934759	sgMsh2	cell line
chr7	81348426	81348426	T	A	ENSMUST00000178892.2	1	ENSMUSG00000025586	missense	Y/F	535	Cpeb1	ENSMUST00000178892.2:c.1604A>T	ENSMUSP00000137079.1:p.Tyr535Phe	H-2-Kb	9	7	5	VCFKFFCRS	VCFKYFCRS	SMM	96.407	118.607	1.23	42	0.238	202.811	222.153	1.095	822.05	618.66	325.7	298.9	118.6069123	96.40731774	113.5664369	106.721028	M2	0.242857143	1.957142857	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	42	5	3	0.6	7qD3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr8	13576361	13576361	T	C	ENSMUST00000117551.3	1	ENSMUSG00000031453	missense	M/V	741	Rasa3	ENSMUST00000117551.3:c.2221A>G	ENSMUSP00000112998.2:p.Met741Val	H-2-Db	9	4	8	YSLFNLYVG	YSLFNLYMG	NetMHC	87.93	363.82	4.138	121	0.298	182.548	418.279	2.291	363.82	87.93	556	201.2	472.737441	298.2771604	313.0184957	163.896621	M2	1.342857143	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.299	121	83	18	0.21686747	8qA1.1	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr8	57777220	57777220	T	C	ENSMUST00000204128.2	5	ENSMUSG00000096914	missense	T/A	590	Galntl6	ENSMUST00000204128.2:c.1768A>G	ENSMUSP00000145321.1:p.Thr590Ala	H-2-Db	9	5	7	FEHINMAVL	FEHINMTVL	NetMHC	199.28	98.45	0.494	86	0.058	348.697	262.782	0.754	98.45	199.28	407.3	578.8	262.1923403	362.7605068	263.3722415	334.6339501	M2	1.357142857	1.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.063	86	6	0	0	8qB2	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	0.264747481	sgMsh2	cell line
chr8	65075052	65075053	CTG	C	ENSMUST00000098716.1	5	ENSMUSG00000074302	FS	L/X	7	Gm10663	ENSMUST00000098716.1:c.28+7_28+8del		H-2-Db	9	11	0	SAFSFFSFL	NA	NetMHCpan	190.6	NA	NA	329	0.198	446.287	NA	NA	NA	284.97	NA	190.6	NA	607.6031266	NA	625.9937541	M2	1.914285714	1.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1976	329	0	0	NA	8qB3.1	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	0.830382576	sgMsh2	cell line
chr7	114036656	114036656	TG	T	ENSMUST00000046687.15	1	ENSMUSG00000038156	FS	G/X	702	Spon1	ENSMUST00000046687.15:c.2108del	ENSMUSP00000041157.9:p.Gly703ValfsTer41	H-2-Db	9	24	0	AAPGNAFAA	NA	NetMHCpan	386.5	NA	NA	84	0.286	442.369	NA	NA	NA	522.35	NA	386.5	NA	417.4649324	NA	467.2722605	M2	0.385714286	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.299	84	2	0	0	7qF1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr7	106891917	106891917	C	A	ENSMUST00000210644.2	3	ENSMUSG00000069390	missense	R/I	64	Olfr707	ENSMUST00000210644.2:c.191G>T	ENSMUSP00000147446.2:p.Arg64Ile	H-2-Kb	8	11	1	INLSFADL	RNLSFADL	NetMHC	3.95	12.2	3.089	15	0.333	8.686	38.049	4.38	12.2	3.95	41.1	8.3	36.03628392	9.07277206	40.06268017	9.632521787	M2	0.628571429	0.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2	2	0.341	15	0	0	NA	7qE3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	2	1	sgMsh2	cell line
chr7	108255891	108255891	TG	T	ENSMUST00000211508.2	3	ENSMUSG00000096465	FS	P/X	82	Olfr488	ENSMUST00000211508.2:c.246del	ENSMUSP00000147652.2:p.Ser83ValfsTer71	H-2-Kb	8	29	0	VAFSSAQL	NA	NetMHC	10.24	NA	NA	301	0.239	18.332	NA	NA	NA	10.24	NA	16.4	NA	20.26469166	NA	21.56453014	M2	0.728571429	0.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.235	301	0	0	NA	7qE3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.987550128	sgMsh2	cell line
chr8	65075052	65075053	CTG	C	ENSMUST00000098716.1	5	ENSMUSG00000074302	FS	L/X	7	Gm10663	ENSMUST00000098716.1:c.28+7_28+8del		H-2-Kb	8	11	0	SAFSFFSF	NA	NetMHCpan	12.1	NA	NA	329	0.198	42.156	NA	NA	NA	18.13	NA	12.1	NA	79.2027024	NA	66.18201718	M2	1.628571429	1.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1976	329	0	0	NA	8qB3.1	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	0.830382576	sgMsh2	cell line
chr7	108066532	108066532	T	C	ENSMUST00000071658.2	NA	ENSMUSG00000063120	missense	M/V	89	Olfr480	ENSMUST00000071658.2:c.265A>G	ENSMUSP00000071583.2:p.Met89Val	H-2-Kb	8	11	1	VYLFLSHL	MYLFLSHL	NetMHCpan	13.1	28.9	2.206	193	0.228	134.327	287.934	2.144	52.58	23.33	28.9	13.1	523.2870654	245.323979	556.8522772	262.8693795	M2	1.271428571	1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.242	193	0	0	NA	7qE3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr8	71579598	71579598	G	A	ENSMUST00000034267.4	1	ENSMUSG00000031808	missense	R/H	121	Slc27a1	ENSMUST00000034267.4:c.362G>A	ENSMUSP00000034267.4:p.Arg121His	H-2-Kb	8	6	6	VANLFHQL	VANLFRQL	NetMHC	24.07	13.87	0.576	81	0.222	28.734	25.693	0.894	13.87	24.07	34.8	29.6	25.21970487	27.97306149	26.16616044	29.49442949	M2	0.285714286	0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.232	81	13	3	0.230769231	8qB3.3	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	0.974943105	sgMsh2	cell line
chr7	110887999	110887999	G	A	ENSMUST00000125758.7	2	ENSMUSG00000005611	missense	A/V	714	Mrvi1	ENSMUST00000125758.7:c.2141C>T	ENSMUSP00000114578.1:p.Ala714Val	H-2-Kb	8	5	7	VVPKFNVL	VVPKFNAL	NetMHC	29.47	7.66	0.26	70	0.271	69.005	31.826	0.461	7.66	29.47	29	56.4	34.65293309	81.60936526	44.53895263	100.1705365	M2	0.857142857	0.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.286	70	0	0	NA	7qE3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr8	65075052	65075053	CTG	C	ENSMUST00000098716.1	5	ENSMUSG00000074302	FS	L/X	7	Gm10663	ENSMUST00000098716.1:c.28+7_28+8del		H-2-Kb	8	12	0	AFSFFSFL	NA	NetMHCpan	17.8	NA	NA	329	0.198	105.365	NA	NA	NA	39.83	NA	17.8	NA	170.8991883	NA	219.1492557	M2	1.914285714	1.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1976	329	0	0	NA	8qB3.1	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	0.830382576	sgMsh2	cell line
chr7	108367789	108367789	T	C	ENSMUST00000209743.1	3	ENSMUSG00000109631	missense	C/R	100	Olfr494	ENSMUST00000209743.1:c.298T>C	ENSMUSP00000148063.1:p.Cys100Arg	H-2-Kb	8	6	6	ISYIARSI	ISYIACSI	NetMHCpan	37.5	30.8	0.821	382	0.272	74.137	81.522	1.1	50.91	45.77	30.8	37.5	112.1346934	102.5038081	116.3429308	105.3755853	M2	0.485714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.272	382	0	0	NA	7qE3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr7	108031681	108031681	A	G	ENSMUST00000210173.2	3	ENSMUSG00000094426	missense	Y/H	221	Olfr478	ENSMUST00000210173.2:c.661T>C	ENSMUSP00000147713.1:p.Tyr221His	H-2-Kb	8	9	3	ISHIYILI	ISYIYILI	NetMHCpan	32.1	7	0.218	315	0.219	78.835	8.59	0.109	4.24	53.98	7	32.1	10.56185011	124.3769779	10.17981768	103.6907462	M2	1.714285714	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.216	315	0	0	NA	7qE3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.907705649	sgMsh2	cell line
chr8	65075052	65075053	CTG	C	ENSMUST00000098716.1	5	ENSMUSG00000074302	FS	L/X	7	Gm10663	ENSMUST00000098716.1:c.28+7_28+8del		H-2-Kb	8	14	0	SFFSFLFV	NA	SMM	21.915	NA	NA	329	0.198	51.677	NA	NA	NA	73.45	NA	108	NA	21.91492557	NA	29.90473787	M2	2.628571429	2.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1976	329	0	0	NA	8qB3.1	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	0.830382576	sgMsh2	cell line
chr7	108255891	108255891	TG	T	ENSMUST00000211508.2	3	ENSMUSG00000096465	FS	P/X	82	Olfr488	ENSMUST00000211508.2:c.246del	ENSMUSP00000147652.2:p.Ser83ValfsTer71	H-2-Kb	8	44	0	ASFWLSWL	NA	NetMHCpan	61.6	NA	NA	301	0.239	78.758	NA	NA	NA	93.36	NA	61.6	NA	74.77217263	NA	82.74466462	M2	1	1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.235	301	0	0	NA	7qE3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.987550128	sgMsh2	cell line
chr8	56110553	56110553	A	G	ENSMUST00000000275.8	1	ENSMUSG00000038257	missense	K/R	361	Glra3	ENSMUST00000000275.8:c.1082A>G	ENSMUSP00000000275.7:p.Lys361Arg	H-2-Kb	8	6	6	VSRQHREL	VSRQHKEL	SMM	69.621	143.794	2.065	192	0.25	100.959	250.036	2.477	322.76	105.37	1502.7	872.9	143.7937467	69.6209588	177.3127641	96.54727043	M2	-2.314285714	-2.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.259	192	0	0	NA	8qB2	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr7	127905762	127905762	T	C	ENSMUST00000071056.13	1	ENSMUSG00000030802	missense	I/T	130	Bckdk	ENSMUST00000071056.13:c.389T>C	ENSMUSP00000070345.7:p.Ile130Thr	H-2-Kb	8	10	2	YTRAFQKL	YIRAFQKL	NetMHCpan	121.7	137.9	1.133	132	0.159	139.122	142.352	1.023	95.73	131.44	137.9	121.7	146.8047136	146.8047136	188.2521739	180.6092545	M2	-0.6	-0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.169	132	156	29	0.185897436	7qF3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.710195624	sgMsh2	cell line
chr7	105555462	105555462	AC	A	ENSMUST00000046983.9	1	ENSMUSG00000037049	FS	P/X	183	Smpd1	ENSMUST00000046983.9:c.551del	ENSMUSP00000042187.8:p.Pro184GlnfsTer72	H-2-Kb	8	47	0	VQIHFAAA	NA	SMMPMBEC	150.918	NA	NA	84	0.131	175.233	NA	NA	NA	165.65	NA	488.7	NA	184.8161845	NA	150.9176382	M2	0.857142857	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.151	84	39	1	0.025641026	7qE3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.634553486	sgMsh2	cell line
chr7	106891917	106891917	C	A	ENSMUST00000210644.2	3	ENSMUSG00000069390	missense	R/I	64	Olfr707	ENSMUST00000210644.2:c.191G>T	ENSMUSP00000147446.2:p.Arg64Ile	H-2-Kb	8	6	6	MYFFLINL	MYFFLRNL	NetMHCpan	89.4	21.1	0.236	15	0.333	104.397	80.985	0.776	78.46	168.14	21.1	89.4	83.51029157	95.8826437	98.3422182	112.911974	M2	1.842857143	1.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2	2	0.341	15	0	0	NA	7qE3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	2	1	sgMsh2	cell line
chr7	108171874	108171874	G	A	ENSMUST00000072035.3	NA	ENSMUSG00000096068	missense	P/L	290	Olfr486	ENSMUST00000072035.3:c.869C>T	ENSMUSP00000071918.3:p.Pro290Leu	H-2-Kb	8	5	7	VIPVLNLL	VIPVLNPL	NetMHC	173.73	43.03	0.248	217	0.263	354.134	130.801	0.369	43.03	173.73	146.4	422.9	115.8083836	306.71852	145.794117	401.5503419	M2	2.142857143	2.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.269	217	0	0	NA	7qE3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr7	108031681	108031681	A	G	ENSMUST00000210173.2	3	ENSMUSG00000094426	missense	Y/H	221	Olfr478	ENSMUST00000210173.2:c.661T>C	ENSMUSP00000147713.1:p.Tyr221His	H-2-Kb	8	7	5	IAISHIYI	IAISYIYI	NetMHCpan	132.8	22.8	0.172	315	0.219	294.664	57.982	0.197	28.92	212.85	22.8	132.8	99.25216755	384.3616066	87.04423244	376.4783444	M2	1.428571429	1.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.216	315	0	0	NA	7qE3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.907705649	sgMsh2	cell line
chr7	105555462	105555462	AC	A	ENSMUST00000046983.9	1	ENSMUSG00000037049	FS	P/X	183	Smpd1	ENSMUST00000046983.9:c.551del	ENSMUSP00000042187.8:p.Pro184GlnfsTer72	H-2-Kb	8	38	0	STWRAQTL	NA	NetMHCpan	140.5	NA	NA	84	0.131	249.349	NA	NA	NA	259.51	NA	140.5	NA	239.1883374	NA	262.2647967	M2	-0.671428571	-0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.151	84	39	1	0.025641026	7qE3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.634553486	sgMsh2	cell line
chr7	143781688	143781688	A	T	ENSMUST00000054048.9	1	ENSMUSG00000048965	missense	L/H	26	Mrgpre	ENSMUST00000054048.9:c.77T>A	ENSMUSP00000058000.8:p.Leu26His	H-2-Kb	8	7	5	TILSHTEL	TILSLTEL	SMM	254.531	564.599	2.218	39	0.282	270.59	569.599	2.105	574.6	263.48	405.1	277.7	564.598864	254.5305993	580.4168341	288.8949831	M2	0.557142857	0.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.287	39	4	0	0	7qF5	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr7	108714066	108714066	C	A	ENSMUST00000074730.3	NA	ENSMUSG00000056946	missense	L/M	238	Olfr512	ENSMUST00000074730.3:c.712C>A	ENSMUSP00000074291.4:p.Leu238Met	H-2-Kb	8	6	6	ILFTIMRM	ILFTILRM	NetMHCpan	74.1	112.6	1.52	292	0.247	290.124	605.685	2.088	729.71	264.21	112.6	74.1	758.1235717	462.1042896	481.6593553	316.0385059	M2	1.385714286	1.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.254	292	0	0	NA	7qE3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr8	23114805	23114805	AT	A	ENSMUST00000121802.8	1	ENSMUSG00000031543	FS	H/X	1036	Ank1	ENSMUST00000121802.8:c.3111del	ENSMUSP00000113571.2:p.Phe1037LeufsTer14	H-2-Kb	8	5	8	VIVEIPHL	VIVEIPHF	NetMHCpan	158.7	1284.1	8.091	85	0.129	410.064	5088.206	12.408	3693.95	304.02	1284.1	158.7	9284.104069	571.1366107	6482.462304	516.1072977	M2	1.242857143	1.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.14	85	25	1	0.04	8qA2	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	0.588327736	sgMsh2	cell line
chr7	108066532	108066532	T	C	ENSMUST00000071658.2	NA	ENSMUSG00000063120	missense	M/V	89	Olfr480	ENSMUST00000071658.2:c.265A>G	ENSMUSP00000071583.2:p.Met89Val	H-2-Kb	8	8	4	HTPVYLFL	HTPMYLFL	NetMHCpan	245.7	219.6	0.894	193	0.228	262.002	292.515	1.116	407.26	463.94	219.6	245.7	316.0385059	266.5262568	268.9923939	257.4779247	M2	1.571428571	1.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.242	193	0	0	NA	7qE3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr8	71507878	71507878	T	C	ENSMUST00000048452.5	1	ENSMUSG00000034845	missense	N/S	298	Plvap	ENSMUST00000048452.5:c.893A>G	ENSMUSP00000035404.4:p.Asn298Ser	H-2-Kb	8	7	5	VTRESAEL	VTRENAEL	SMM	246.456	351.35	1.426	21	0.381	424.802	871.453	2.051	1723.35	490.07	1343.2	867.9	351.3500341	246.456343	399.7053856	359.5340277	M2	-1.057142857	-1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.409	21	0	0	NA	8qB3.3	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	2	1	sgMsh2	cell line
chr8	65075052	65075053	CTG	C	ENSMUST00000098716.1	5	ENSMUSG00000074302	FS	L/X	7	Gm10663	ENSMUST00000098716.1:c.28+7_28+8del		H-2-Kb	9	11	0	SAFSFFSFL	NA	NetMHCpan	2.6	NA	NA	329	0.198	7.817	NA	NA	NA	3.07	NA	2.6	NA	12.56348137	NA	20.76108278	M2	1.914285714	1.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1976	329	0	0	NA	8qB3.1	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	0.830382576	sgMsh2	cell line
chr7	108066532	108066532	T	C	ENSMUST00000071658.2	NA	ENSMUSG00000063120	missense	M/V	89	Olfr480	ENSMUST00000071658.2:c.265A>G	ENSMUSP00000071583.2:p.Met89Val	H-2-Kb	9	10	2	PVYLFLSHL	PMYLFLSHL	SMM	27.74	12.797	0.461	193	0.228	31.825	25.891	0.814	28.38	30.85	39.4	32.8	12.79705392	27.74022632	23.40183969	47.56089297	M2	1.271428571	1.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.242	193	0	0	NA	7qE3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr7	108255891	108255891	TG	T	ENSMUST00000211508.2	3	ENSMUSG00000096465	FS	P/X	82	Olfr488	ENSMUST00000211508.2:c.246del	ENSMUSP00000147652.2:p.Ser83ValfsTer71	H-2-Kb	9	29	0	VAFSSAQLL	NA	NetMHCpan	69.5	NA	NA	301	0.239	97.94	NA	NA	NA	78.09	NA	69.5	NA	117.790428	NA	204.7623004	M2	1.014285714	1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.235	301	0	0	NA	7qE3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.987550128	sgMsh2	cell line
chr8	4214160	4214160	G	A	ENSMUST00000168386.8	5	ENSMUSG00000064125	missense	T/M	502	Prr36	ENSMUST00000168386.8:c.1505C>T	ENSMUSP00000133114.2:p.Thr502Met	H-2-Kb	9	7	5	TSLVMSSQL	TSLVTSSQL	NetMHC	88.56	251.51	2.84	90	0.233	195.96	406.946	2.077	251.51	88.56	732	219.9	356.5414284	186.6852475	457.3513865	205.2343263	M2	1.228571429	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.232	90	3	0	0	8qA1.1	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	0.974943105	sgMsh2	cell line
chr7	106891917	106891917	C	A	ENSMUST00000210644.2	3	ENSMUSG00000069390	missense	R/I	64	Olfr707	ENSMUST00000210644.2:c.191G>T	ENSMUSP00000147446.2:p.Arg64Ile	H-2-Kb	9	5	7	PMYFFLINL	PMYFFLRNL	SMM	20.235	28.583	1.413	15	0.333	65.612	43.36	0.661	48.02	99.29	38.7	146.4	28.58314418	20.23531643	48.44511598	31.93375581	M2	1.842857143	1.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2	2	0.341	15	0	0	NA	7qE3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	2	1	sgMsh2	cell line
chr7	108031681	108031681	A	G	ENSMUST00000210173.2	3	ENSMUSG00000094426	missense	Y/H	221	Olfr478	ENSMUST00000210173.2:c.661T>C	ENSMUSP00000147713.1:p.Tyr221His	H-2-Kb	9	7	5	IAISHIYIL	IAISYIYIL	NetMHCpan	89.6	39.6	0.442	315	0.219	172.099	112.772	0.655	92.77	178.58	39.6	89.6	132.7730709	165.6189397	178.3405083	224.0010221	M2	1.714285714	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.216	315	0	0	NA	7qE3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.907705649	sgMsh2	cell line
chr7	138229856	138229856	A	G	ENSMUST00000160436.1	5	ENSMUSG00000091002	missense	M/T	464	Tcerg1l	ENSMUST00000160436.1:c.1391T>C	ENSMUSP00000124476.1:p.Met464Thr	H-2-Kb	9	5	7	VTHFRDTLL	VTHFRDMLL	SMMPMBEC	144.295	160.048	1.109	64	0.188	193.254	171.84	0.889	177.68	224.66	340.6	468.5	166.0007308	161.8489924	160.0479073	144.2945739	M2	-0.214285714	-0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	64	0	0	NA	7qF4	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.840468194	sgMsh2	cell line
chr8	65075052	65075053	CTG	C	ENSMUST00000098716.1	5	ENSMUSG00000074302	FS	L/X	7	Gm10663	ENSMUST00000098716.1:c.28+7_28+8del		H-2-Kb	9	13	0	FSFFSFLFV	NA	NetMHCpan	199.9	NA	NA	329	0.198	268.957	NA	NA	NA	264.23	NA	199.9	NA	274.2268658	NA	273.6843727	M2	2.628571429	2.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1976	329	0	0	NA	8qB3.1	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	0.830382576	sgMsh2	cell line
chr7	108317521	108317521	T	C	ENSMUST00000214605.1	2	ENSMUSG00000094612	missense	V/A	209	Olfr491	ENSMUST00000214605.1:c.626T>C	ENSMUSP00000150694.1:p.Val209Ala	H-2-Kb	9	10	2	VATVFVISV	VVTVFVISV	NetMHC	342.27	467.62	1.366	303	0.221	395.11	553.012	1.4	467.62	342.27	735.6	356.6	487.6519891	433.6206938	618.3722614	534.872168	M2	2.628571429	3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.222	303	0	0	NA	7qE3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.932919695	sgMsh2	cell line
chr8	71579598	71579598	G	A	ENSMUST00000034267.4	1	ENSMUSG00000031808	missense	R/H	121	Slc27a1	ENSMUST00000034267.4:c.362G>A	ENSMUSP00000034267.4:p.Arg121His	H-2-Kb	9	5	7	AVANLFHQL	AVANLFRQL	NetMHCpan	192.4	198.1	1.03	81	0.222	439.03	390.941	0.89	171.87	351.74	198.1	192.4	670.0543022	634.0302809	583.781059	526.3201534	M2	0.285714286	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.232	81	13	3	0.230769231	8qB3.3	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	0.974943105	sgMsh2	cell line
chr8	56110553	56110553	A	G	ENSMUST00000000275.8	1	ENSMUSG00000038257	missense	K/R	361	Glra3	ENSMUST00000000275.8:c.1082A>G	ENSMUSP00000000275.7:p.Lys361Arg	H-2-Kb	9	6	6	VSRQHRELL	VSRQHKELL	SMM	223.414	253.577	1.135	192	0.25	294.719	447.137	1.517	629.88	360.22	1230.8	842.1	253.577082	223.4138023	264.3930288	229.2186762	M2	-1.657142857	-1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.259	192	0	0	NA	8qB2	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr7	110887999	110887999	G	A	ENSMUST00000125758.7	2	ENSMUSG00000005611	missense	A/V	714	Mrvi1	ENSMUST00000125758.7:c.2141C>T	ENSMUSP00000114578.1:p.Ala714Val	H-2-Kb	9	4	8	AVVPKFNVL	AVVPKFNAL	NetMHCpan	258.2	124.9	0.484	70	0.271	385.49	203.081	0.527	106.75	392.32	124.9	258.2	281.2613131	396.378418	305.6680173	378.6604965	M2	0.857142857	0.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.286	70	0	0	NA	7qE3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr8	71579598	71579598	G	A	ENSMUST00000034267.4	1	ENSMUSG00000031808	missense	R/H	121	Slc27a1	ENSMUST00000034267.4:c.362G>A	ENSMUSP00000034267.4:p.Arg121His	H-2-Kb	9	7	5	ANLFHQLGF	ANLFRQLGF	SMM	473.271	457.204	0.966	81	0.222	498.649	517.722	1.038	578.24	500.42	669.2	536.4	457.2039776	473.271116	452.1161284	496.8782653	M2	0.871428571	0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.232	81	13	3	0.230769231	8qB3.3	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	0.974943105	sgMsh2	cell line
chr7	108255891	108255891	TG	T	ENSMUST00000211508.2	3	ENSMUSG00000096465	FS	P/X	82	Olfr488	ENSMUST00000211508.2:c.246del	ENSMUSP00000147652.2:p.Ser83ValfsTer71	H-2-Kb	9	44	0	ASFWLSWLM	NA	SMM	308.397	NA	NA	301	0.239	329.927	NA	NA	NA	811.7	NA	308.9	NA	308.3968972	NA	350.9538411	M2	1.385714286	1.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.235	301	0	0	NA	7qE3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.987550128	sgMsh2	cell line
chr9	18815670	18815670	C	A	ENSMUST00000215380.2	3	ENSMUSG00000078116	missense	G/V	208	Olfr828	ENSMUST00000215380.2:c.623G>T	ENSMUSP00000148853.1:p.Gly208Val	H-2-Db	9	6	6	TIILNVIPI	TIILNGIPI	NetMHCpan	48.6	43.3	0.891	117	0.248	71.12	73.469	1.033	45.88	57.99	43.3	48.6	129.0089974	113.1409966	101.0578373	84.25001755	M2	2.342857143	2.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.252	117	0	0	NA	9qA2	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr8	109551631	109551631	C	T	ENSMUST00000042601.8	1	ENSMUSG00000037993	missense	D/N	1138	Dhx38	ENSMUST00000042601.8:c.3412G>A	ENSMUSP00000047865.7:p.Asp1138Asn	H-2-Db	9	7	5	VTAVNGEWL	VTAVDGEWL	NetMHC	127.35	8821.39	69.269	91	0.231	384.136	9938.338	25.872	8821.39	127.35	6722.3	173.2	12723.89276	660.1156057	11055.28645	595.0726634	M2	0.214285714	0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.247	91	64	23	0.359375	8qD3	chr8-92830365-129138455	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr8	92972891	92972891	GC	G	ENSMUST00000072939.7	1	ENSMUSG00000055368	FS	S/X	182	Slc6a2	ENSMUST00000072939.7:c.549del	ENSMUSP00000072709.6:p.Asn184ThrfsTer58	H-2-Db	9	35	0	SSHQLRSFM	NA	NetMHC	153.91	NA	NA	148	0.318	396.446	NA	NA	NA	153.91	NA	2001.2	NA	282.8915661	NA	509.9997932	M2	-0.5	-0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.32	148	0	0	NA	8qC5	chr8-92830365-129138455	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr9	19137655	19137655	A	G	ENSMUST00000215699.1	5	ENSMUSG00000110621	missense	I/V	221	Olfr837	ENSMUST00000215699.1:c.661A>G	ENSMUSP00000149907.1:p.Ile221Val	H-2-Kb	8	4	8	IIFSYVHV	IIFSYVHI	NetMHC	4.78	6.82	1.427	206	0.024	6.694	8.477	1.266	6.82	4.78	6.5	8.3	12.69813676	6.994231455	10.13304567	6.393519587	M2	1.485714286	1.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.03	206	0	0	NA	9qA2	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.126070229	sgMsh2	cell line
chr8	124028933	124028933	T	C	ENSMUST00000034457.8	1	ENSMUSG00000031976	missense	Y/H	460	Urb2	ENSMUST00000034457.8:c.1378T>C	ENSMUSP00000034457.8:p.Tyr460His	H-2-Kb	8	7	5	VFQTHAKL	VFQTYAKL	SMM	70.915	18.312	0.258	173	0.254	106.19	20.473	0.193	16.15	114.49	51	301.1	18.31217795	70.91530907	22.63288934	97.89037676	M2	-0.414285714	-0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.244	173	51	17	0.333333333	8qE2	chr8-92830365-129138455	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr9	38848204	38848204	C	T	ENSMUST00000217350.1	5	ENSMUSG00000062103	missense	A/V	30	Olfr924	ENSMUST00000217350.1:c.89C>T	ENSMUSP00000149849.1:p.Ala30Val	H-2-Kb	8	11	1	VIYVITVV	AIYVITVV	NetMHC	202.6	1252.59	6.183	254	0.319	217.935	913.276	4.191	1252.59	202.6	849.9	203.2	976.6523514	259.2626764	797.5170931	232.6697911	M2	2.8	2.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.305	254	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr8	105878842	105878842	T	C	ENSMUST00000008594.8	1	ENSMUSG00000008450	missense	F/S	103	Nutf2	ENSMUST00000008594.8:c.308T>C	ENSMUSP00000008594.7:p.Phe103Ser	H-2-Kb	8	5	7	MGFHQMSL	MGFHQMFL	NetMHCpan	61.8	73.9	1.196	110	0.245	150.906	134.413	0.891	345.7	271.66	73.9	61.8	105.6185011	124.0909187	163.2074578	177.7215122	M2	0.085714286	0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.256	110	3	0	0	8qD3	chr8-92830365-129138455	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr9	21348598	21348598	C	T	ENSMUST00000034697.7	1	ENSMUSG00000057193	missense	P/L	634	Slc44a2	ENSMUST00000034697.7:c.1901C>T	ENSMUSP00000034697.7:p.Pro634Leu	H-2-Kb	8	4	8	IVQDTAPL	IVQDTAPP	SMMPMBEC	253.361	6572.642	25.942	143	0.175	303.163	17232.021	56.841	29403.32	342.85	27891.4	575.9	6378.8149	263.475356	6572.642338	253.3611374	M2	0.071428571	0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.193	143	131	30	0.229007634	9qA3	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.811051807	sgMsh2	cell line
chr8	83725234	83725234	A	G	ENSMUST00000075843.12	1	ENSMUSG00000002885	missense	M/T	563	Adgre5	ENSMUST00000075843.12:c.1688T>C	ENSMUSP00000075240.6:p.Met563Thr	H-2-Kb	8	7	5	SSRTTVHL	SSRTMVHL	SMMPMBEC	310.27	134.196	0.433	104	0.298	344.132	130.589	0.379	73.79	367.09	280.6	1261.9	126.9813676	321.1737185	134.1961326	310.2701531	M2	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.296	104	135	39	0.288888889	8qC2	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr8	124028933	124028933	T	C	ENSMUST00000034457.8	1	ENSMUSG00000031976	missense	Y/H	460	Urb2	ENSMUST00000034457.8:c.1378T>C	ENSMUSP00000034457.8:p.Tyr460His	H-2-Kb	9	6	6	TVFQTHAKL	TVFQTYAKL	NetMHC	42.12	10.72	0.255	173	0.254	141.749	43.932	0.31	10.72	42.12	14.2	48.4	86.71814915	303.4659719	73.66310144	235.0985768	M2	-0.414285714	0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.244	173	51	17	0.333333333	8qE2	chr8-92830365-129138455	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr9	36747934	36747934	T	C	ENSMUST00000120381.8	1	ENSMUSG00000032116	missense	M/V	370	Stt3a	ENSMUST00000120381.8:c.1108A>G	ENSMUSP00000113116.1:p.Met370Val	H-2-Kb	9	8	4	LVFVFPVGL	LVFMFPVGL	NetMHCpan	32.6	24.8	0.761	73	0.342	75.98	83.74	1.102	45.27	48.18	24.8	32.6	122.2109162	103.7791239	127.4236379	133.428929	M2	2.257142857	2.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.3	73	600	163	0.271666667	9qA4	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr8	109551631	109551631	C	T	ENSMUST00000042601.8	1	ENSMUSG00000037993	missense	D/N	1138	Dhx38	ENSMUST00000042601.8:c.3412G>A	ENSMUSP00000047865.7:p.Asp1138Asn	H-2-Kb	9	10	2	VNGEWLAEL	VDGEWLAEL	NetMHC	116.53	3630.39	31.154	91	0.231	130.917	2132.941	16.292	3630.39	116.53	5738.1	292.5	635.4918716	125.9244318	562.6651281	135.909558	M2	0.157142857	0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.247	91	64	23	0.359375	8qD3	chr8-92830365-129138455	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr9	19137655	19137655	A	G	ENSMUST00000215699.1	5	ENSMUSG00000110621	missense	I/V	221	Olfr837	ENSMUST00000215699.1:c.661A>G	ENSMUSP00000149907.1:p.Ile221Val	H-2-Kb	9	4	8	IIFSYVHVV	IIFSYVHIV	NetMHCpan	48.5	57.2	1.179	206	0.024	189.755	167.322	0.882	132.29	140.04	57.2	48.5	202.3531643	240.4971865	245.6122367	239.4693856	M2	1.442857143	1.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.03	206	0	0	NA	9qA2	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.126070229	sgMsh2	cell line
chr8	105878842	105878842	T	C	ENSMUST00000008594.8	1	ENSMUSG00000008450	missense	F/S	103	Nutf2	ENSMUST00000008594.8:c.308T>C	ENSMUSP00000008594.7:p.Phe103Ser	H-2-Kb	9	4	8	IMGFHQMSL	IMGFHQMFL	SMMPMBEC	166.437	225.554	1.355	110	0.245	175.497	253.816	1.446	305.48	177.57	275.3	221.2	232.3325184	173.4243199	225.553723	166.4370463	M2	0.085714286	0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.256	110	3	0	0	8qD3	chr8-92830365-129138455	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr8	105878842	105878842	T	C	ENSMUST00000008594.8	1	ENSMUSG00000008450	missense	F/S	103	Nutf2	ENSMUST00000008594.8:c.308T>C	ENSMUSP00000008594.7:p.Phe103Ser	H-2-Kb	9	5	7	MGFHQMSLL	MGFHQMFLL	NetMHCpan	61.9	85	1.373	110	0.245	289.966	372.137	1.283	284.96	204	85	61.9	459.3143352	375.9326101	492.3228579	387.4806325	M2	0.685714286	0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.256	110	3	0	0	8qD3	chr8-92830365-129138455	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr8	105178615	105178615	A	T	ENSMUST00000052209.8	1	ENSMUSG00000031885	missense	N/I	63	Cbfb	ENSMUST00000052209.8:c.188A>T	ENSMUSP00000059382.2:p.Asn63Ile	H-2-Kb	9	3	9	IAFVATGTI	IAFVATGTN	NetMHCpan	147.4	7924.2	53.76	109	0.202	476.809	5159.061	10.82	13674.64	401.4	7924.2	147.4	2393.922023	552.2172896	1762.990613	624.0939895	M2	1.642857143	2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.213	109	221	37	0.167420814	8qD3	chr8-92830365-129138455	4	2	2	0.99	4.160317559	NA	1	0.895098626	sgMsh2	cell line
chr9	19137655	19137655	A	G	ENSMUST00000215699.1	5	ENSMUSG00000110621	missense	I/V	221	Olfr837	ENSMUST00000215699.1:c.661A>G	ENSMUSP00000149907.1:p.Ile221Val	H-2-Kb	9	6	6	FSYVHVVST	FSYVHIVST	SMMPMBEC	339.821	289.901	0.853	206	0.024	443.084	395.912	0.894	709.6	696.5	464.4	485.2	327.4236157	400.9682638	289.9011913	339.8208329	M2	0.942857143	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.03	206	0	0	NA	9qA2	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.126070229	sgMsh2	cell line
chr9	110551106	110551106	A	C	ENSMUST00000153838.7	5	ENSMUSG00000044791	missense	K/Q	1330	Setd2	ENSMUST00000153838.7:c.3988A>C	ENSMUSP00000116313.2:p.Lys1330Gln	H-2-Db	9	6	6	SSPSNQFFF	SSPSNKFFF	NetMHC	18.77	33.54	1.787	184	0.027	102.45	162.682	1.588	33.54	18.77	130.1	86.7	195.2630191	118.2006868	244.1012481	158.6974688	M2	-0.142857143	-0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.035	184	136	1	0.007352941	9qF2	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.147081934	sgMsh2	cell line
chr9	39319215	39319215	T	C	ENSMUST00000216132.1	5	ENSMUSG00000057349	missense	N/S	133	Olfr948	ENSMUST00000216132.1:c.398A>G	ENSMUSP00000149422.1:p.Asn133Ser	H-2-Db	9	10	2	YSVTMSYQI	YNVTMSYQI	NetMHC	117.25	2371.18	20.223	305	0.269	265.249	2246.64	8.47	2371.18	117.25	2122.1	218.2	2861.672961	426.2064325	1934.505639	312.2985731	M2	0.614285714	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.277	305	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr9	79700292	79700292	A	G	ENSMUST00000071750.12	5	ENSMUSG00000032332	missense	V/A	418	Col12a1	ENSMUST00000071750.12:c.1253T>C	ENSMUSP00000071662.6:p.Val418Ala	H-2-Db	9	10	2	SAMEKTQPM	SVMEKTQPM	NetMHCpan	125.7	1248.9	9.936	112	0.25	175.26	1710.194	9.758	2771.11	136.91	1248.9	125.7	1366.53261	213.6092229	2053.856042	321.7881152	M2	-1.342857143	-1.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.255	112	10	0	0	9qE1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr9	100855832	100855832	A	T	ENSMUST00000129269.7	1	ENSMUSG00000037286	missense	E/V	414	Stag1	ENSMUST00000129269.7:c.1241A>T	ENSMUSP00000116205.1:p.Glu414Val	H-2-Db	9	3	9	EALSNEDCV	EALSNEDCE	NetMHC	162.17	20754.53	127.98	233	0.258	364.555	11513.819	31.583	20754.53	162.17	29954.3	951.5	2273.107631	411.7370988	1269.316718	317.3730167	M2	-0.114285714	-0.114285714	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.256	233	48	12	0.25	9qE3.3	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr9	57792568	57792568	G	A	ENSMUST00000171444.7	5	ENSMUSG00000004661	missense	T/I	552	Arid3b	ENSMUST00000171444.7:c.1655C>T	ENSMUSP00000130173.1:p.Thr552Ile	H-2-Db	9	3	9	SSHCSPSPI	SSHCSPSPT	NetMHC	173.27	6340.24	36.592	37	0.351	338.683	5350.539	15.798	6340.24	173.27	11012.5	480.6	3569.603675	249.2412955	4360.838467	428.1244195	M2	-0.142857143	-0.142857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.328	37	2	0	0	9qB	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr9	50581694	50581694	A	G	ENSMUST00000214117.1	1	ENSMUSG00000039217	missense	T/A	187	Il18	ENSMUST00000214117.1:c.559A>G	ENSMUSP00000151002.1:p.Thr187Ala	H-2-Kb	8	11	6	VMFTLANL	VMFTLTNL	NetMHC	3.29	6.48	1.97	104	0.279	4.722	10.446	2.212	6.48	3.29	5.6	4.4	14.41252256	5.043592613	15.83944645	5.429252	M2	1.414285714	1.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.287	104	6	2	0.333333333	9qA5.3	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr9	75009121	75009121	T	C	ENSMUST00000081746.6	1	ENSMUSG00000034858	missense	V/A	341	Fam214a	ENSMUST00000081746.6:c.1022T>C	ENSMUSP00000080442.5:p.Val341Ala	H-2-Kb	8	10	2	SARTFKSL	SVRTFKSL	NetMHC	36.76	38.28	1.041	97	0.175	89.089	86.247	0.968	38.28	36.76	126.3	177.1	85.8499408	84.47729517	86.64430052	93.70008827	M2	-0.214285714	-0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.194	97	11	1	0.090909091	9qD	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.815254148	sgMsh2	cell line
chr9	106155782	106155782	A	G	ENSMUST00000036382.12	1	ENSMUSG00000020258	missense	V/A	344	Glyctk	ENSMUST00000036382.12:c.1031T>C	ENSMUSP00000047761.6:p.Val344Ala	H-2-Kb	8	10	2	RAARFYGL	RVARFYGL	NetMHCpan	27.8	30.5	1.097	38	0.237	63.802	70.784	1.109	50	37.5	30.5	27.8	91.56721386	90.10315536	110.8510982	119.8781411	M2	0.571428571	0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.231	38	1	0	0	9qF1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.970740764	sgMsh2	cell line
chr9	39593690	39593690	A	G	ENSMUST00000042485.10	1	ENSMUSG00000038112	missense	L/P	502	AW551984	ENSMUST00000042485.10:c.1505T>C	ENSMUSP00000042582.4:p.Leu502Pro	H-2-Kb	8	5	7	RLIIYSPL	RLIIYSLL	NetMHCpan	39.7	75.5	1.902	104	0.269	56.855	182.401	3.208	176.55	45.36	75.5	39.7	207.8452003	78.47656766	188.2521739	68.3502331	M2	1.842857143	1.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.261	104	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr9	106155782	106155782	A	G	ENSMUST00000036382.12	1	ENSMUSG00000020258	missense	V/A	344	Glyctk	ENSMUST00000036382.12:c.1031T>C	ENSMUSP00000047761.6:p.Val344Ala	H-2-Kb	8	11	1	AARFYGLL	VARFYGLL	NetMHCpan	46.2	13.4	0.29	38	0.237	94.506	24.316	0.257	14.69	61.15	13.4	46.2	33.94220093	127.8615603	42.43654321	145.4587999	M2	0.857142857	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.231	38	1	0	0	9qF1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.970740764	sgMsh2	cell line
chr9	39258136	39258136	A	C	ENSMUST00000076903.2	NA	ENSMUSG00000063380	missense	C/G	182	Olfr945	ENSMUST00000076903.2:c.544T>G	ENSMUSP00000076169.2:p.Cys182Gly	H-2-Kb	8	6	6	INHYFGDI	INHYFCDI	NetMHCpan	102	90.9	0.891	225	0.489	276.289	313.213	1.134	217.41	182.12	90.9	102	466.380088	456.8146256	409.0157201	370.458872	M2	-0.657142857	-0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.485	225	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	2	1	sgMsh2	cell line
chr9	39018999	39018999	G	T	ENSMUST00000214410.1	5	ENSMUSG00000058820	missense	L/I	181	Olfr146	ENSMUST00000214410.1:c.541C>A	ENSMUSP00000149294.1:p.Leu181Ile	H-2-Kb	8	4	8	INHYFCDI	INHYFCDL	NetMHCpan	90.9	29.4	0.323	238	0.227	313.213	50.321	0.161	26.98	217.41	29.4	90.9	71.90183929	466.380088	71.24263926	409.0157201	M2	-0.242857143	-0.242857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.219	238	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.920312672	sgMsh2	cell line
chr9	88476836	88476836	A	G	ENSMUST00000173801.7	1	ENSMUSG00000032423	missense	F/L	207	Syncrip	ENSMUST00000173801.7:c.619T>C	ENSMUSP00000133649.1:p.Phe207Leu	H-2-Kb	8	5	7	LNRGYALV	LNRGYAFV	NetMHC	300.95	433.7	1.441	34	0.235	353.739	317.073	0.896	433.7	300.95	347.9	331	249.8848923	376.4783444	286.246378	409.9585987	M2	0.014285714	0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.265	34	48	9	0.1875	9qE3.1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr9	88567183	88567183	A	G	ENSMUST00000162827.7	1	ENSMUSG00000032425	missense	T/A	14	Zfp949	ENSMUST00000162827.7:c.40A>G	ENSMUSP00000125325.1:p.Thr14Ala	H-2-Kb	8	5	7	VSFEDVAV	VSFEDVTV	SMM	137.956	229.477	1.663	102	0.294	234.442	389.195	1.66	538.65	316.57	957.8	868.8	229.4774419	137.9558114	239.7397234	152.3140619	M2	0.742857143	0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.314	102	11	4	0.363636364	9qE3.1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr9	108052065	108052065	A	G	ENSMUST00000162355.7	1	ENSMUSG00000041528	missense	V/A	1271	Rnf123	ENSMUST00000162355.7:c.3812T>C	ENSMUSP00000125745.1:p.Val1271Ala	H-2-Kb	8	8	4	ISAAFQPC	ISAVFQPC	SMM	176.092	168.943	0.959	153	0.196	417.672	294.935	0.706	357.2	561.35	396.1	585.7	168.9429215	176.0921516	232.6697911	273.9933359	M2	0.428571429	0.714285714	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.207	153	36	15	0.416666667	9qF1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.869884581	sgMsh2	cell line
chr9	106155782	106155782	A	G	ENSMUST00000036382.12	1	ENSMUSG00000020258	missense	V/A	344	Glyctk	ENSMUST00000036382.12:c.1031T>C	ENSMUSP00000047761.6:p.Val344Ala	H-2-Kb	9	10	2	RAARFYGLL	RVARFYGLL	NetMHC	16.87	23.3	1.381	38	0.237	71.279	81.97	1.15	23.3	16.87	21.8	17.5	140.6403699	125.0575741	181.6561058	157.1267038	M2	0.857142857	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.231	38	1	0	0	9qF1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.970740764	sgMsh2	cell line
chr9	39185005	39185005	G	A	ENSMUST00000071617.5	3	ENSMUSG00000094970	missense	V/M	276	Olfr943	ENSMUST00000071617.5:c.826G>A	ENSMUSP00000071545.5:p.Val276Met	H-2-Kb	9	11	1	MSSVFYTTV	VSSVFYTTV	NetMHC	27.88	11.22	0.402	256	0.215	117.395	46.229	0.394	11.22	27.88	11.9	28.2	80.55824568	206.5903351	94.24319478	243.9214539	M2	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.223	256	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.937122036	sgMsh2	cell line
chr9	41969739	41969739	T	G	ENSMUST00000060989.8	1	ENSMUSG00000049313	missense	K/T	2162	Sorl1	ENSMUST00000060989.8:c.6485A>C	ENSMUSP00000058613.8:p.Lys2162Thr	H-2-Kb	9	7	5	ILYTTHRRL	ILYTKHRRL	NetMHCpan	38.5	39.5	1.026	19	0.316	207.103	89.609	0.433	28.42	39.88	39.5	38.5	191.9154771	390.9399022	139.7172407	374.3260056	M2	-1.585714286	-0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.336	19	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	2	1	sgMsh2	cell line
chr9	50581694	50581694	A	G	ENSMUST00000214117.1	1	ENSMUSG00000039217	missense	T/A	187	Il18	ENSMUST00000214117.1:c.559A>G	ENSMUSP00000151002.1:p.Thr187Ala	H-2-Kb	9	10	7	SVMFTLANL	SVMFTLTNL	NetMHC	40.06	93.53	2.335	104	0.279	145.749	207.489	1.424	93.53	40.06	79.4	51	321.4474612	240.4971865	457.3513865	335.930936	M2	1.414285714	1.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.287	104	6	2	0.333333333	9qA5.3	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr9	39078200	39078200	A	G	ENSMUST00000056499.3	NA	ENSMUSG00000048501	missense	F/L	182	Olfr938	ENSMUST00000056499.3:c.544T>C	ENSMUSP00000055053.2:p.Phe182Leu	H-2-Kb	9	3	9	INHYFCDLL	INHYFCDLF	NetMHC	40.99	129.13	3.15	167	0.311	94.887	238.502	2.514	129.13	40.99	365.4	57	223.9288243	132.7730709	253.0754397	146.3019114	M2	0.7	0.7	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.317	167	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr9	71725634	71725634	T	G	ENSMUST00000072899.8	5	ENSMUSG00000032232	missense	N/T	145	Cgnl1	ENSMUST00000072899.8:c.434A>C	ENSMUSP00000072672.2:p.Asn145Thr	H-2-Kb	9	10	2	LTFQRHPEL	LNFQRHPEL	NetMHCpan	36.8	28.1	0.764	127	0.307	90.799	70.924	0.781	73.26	81.31	28.1	36.8	84.74420308	133.0791444	68.58829388	100.2882377	M2	-1.385714286	-0.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.303	127	184	38	0.206521739	9qD	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr9	96297705	96297705	G	GA	ENSMUST00000165768.3	1	ENSMUSG00000032411	FS	E/EX	140	Tfdp2	ENSMUST00000165768.3:c.426dup	ENSMUSP00000128260.2:p.Glu143ArgfsTer47	H-2-Kb	9	20	0	PAYQFCSGM	NA	NetMHC	85.15	NA	NA	146	0.226	106.96	NA	NA	NA	85.15	NA	165.8	NA	88.53398242	NA	125.3862749	M2	0.171428571	0.171428571	FALSE	FALSE	FALSE	1	FALSE	0	Strelka2;Vardict	2	0.226	146	97	0	0	9qE3.3	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.949729059	sgMsh2	cell line
chr9	39258136	39258136	A	C	ENSMUST00000076903.2	NA	ENSMUSG00000063380	missense	C/G	182	Olfr945	ENSMUST00000076903.2:c.544T>G	ENSMUSP00000076169.2:p.Cys182Gly	H-2-Kb	9	5	7	VINHYFGDI	VINHYFCDI	NetMHC	248.12	402.57	1.622	225	0.489	313.678	336.411	1.072	402.57	248.12	262.7	378.9	382.9217191	379.4110717	289.9011913	248.4562923	M2	-0.657142857	0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.485	225	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	2	1	sgMsh2	cell line
chr9	39258136	39258136	A	C	ENSMUST00000076903.2	NA	ENSMUSG00000063380	missense	C/G	182	Olfr945	ENSMUST00000076903.2:c.544T>G	ENSMUSP00000076169.2:p.Cys182Gly	H-2-Kb	9	6	6	INHYFGDIL	INHYFCDIL	NetMHCpan	249.4	114.5	0.459	225	0.489	350.747	161.261	0.46	107.57	280.66	114.5	249.4	208.0223508	420.8332054	225.553723	456.2995075	M2	0.385714286	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.485	225	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	2	1	sgMsh2	cell line
chr9	40101259	40101259	G	A	ENSMUST00000213858.1	5	ENSMUSG00000045812	missense	T/I	77	Olfr984	ENSMUST00000213858.1:c.230C>T	ENSMUSP00000150545.1:p.Thr77Ile	H-2-Kb	9	11	1	IAPRMLVDL	TAPRMLVDL	NetMHCpan	306.8	1009.8	3.291	116	0.224	448.824	978.291	2.18	830.7	325.84	1009.8	306.8	1132.687219	660.8608125	946.7820161	571.8077009	M2	0.585714286	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.245	116	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr9	39018999	39018999	G	T	ENSMUST00000214410.1	5	ENSMUSG00000058820	missense	L/I	181	Olfr146	ENSMUST00000214410.1:c.541C>A	ENSMUSP00000149294.1:p.Leu181Ile	H-2-Kb	9	4	8	INHYFCDII	INHYFCDLI	NetMHC	329.69	127.26	0.386	238	0.227	436.374	256.697	0.588	127.26	329.69	183.7	356.2	329.6932077	516.547186	338.259498	521.4948213	M2	0.9	0.9	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.219	238	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.920312672	sgMsh2	cell line
chr9	59324811	59324811	A	G	ENSMUST00000026265.7	1	ENSMUSG00000025235	missense	V/A	362	Bbs4	ENSMUST00000026265.7:c.1085T>C	ENSMUSP00000026265.6:p.Val362Ala	H-2-Kb	9	8	4	RAYAEAVRL	RAYVEAVRL	NetMHCpan	175.4	120.3	0.686	148	0.264	497.9	316.494	0.636	232.02	361.77	120.3	175.4	400.9682638	634.0302809	528.7495369	724.853099	M2	0.328571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.267	148	10	2	0.2	9qB	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr9	43791318	43791318	A	G	ENSMUST00000034510.8	1	ENSMUSG00000032012	missense	M/V	121	Nectin1	ENSMUST00000034510.8:c.361A>G	ENSMUSP00000034510.7:p.Met121Val	H-2-Kb	9	11	1	VYICEFATF	MYICEFATF	SMM	270.464	693.601	2.564	63	0.19	347.49	830.945	2.391	915.58	403.74	908.1	406.8	693.6014622	270.4643321	753.7893549	291.2393144	M2	1.457142857	1.571428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.197	63	10	3	0.3	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.827861171	sgMsh2	cell line
chr9	79700292	79700292	A	G	ENSMUST00000071750.12	5	ENSMUSG00000032332	missense	V/A	418	Col12a1	ENSMUST00000071750.12:c.1253T>C	ENSMUSP00000071662.6:p.Val418Ala	H-2-Kb	9	10	2	SAMEKTQPM	SVMEKTQPM	SMM	269.222	302.768	1.125	112	0.25	366.093	382.295	1.044	386.8	405.41	430.7	414	302.7680195	269.2216614	377.7896015	326.7758854	M2	-1.342857143	-1.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.255	112	10	0	0	9qE1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	sgMsh2	cell line
chr9	95970760	95970760	A	G	ENSMUST00000034981.13	1	ENSMUSG00000032410	missense	H/R	220	Xrn1	ENSMUST00000034981.13:c.659A>G	ENSMUSP00000034981.7:p.His220Arg	H-2-Kb	9	7	5	SHEARFSLL	SHEAHFSLL	SMMPMBEC	328.284	360.786	1.099	204	0.216	468.095	449.995	0.961	466.37	517.29	674.8	965.9	433.6206938	418.8996524	360.7862685	328.2842143	M2	0.485714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.213	204	38	10	0.263157895	9qE3.3	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.895098626	sgMsh2	cell line
chrX	129957349	129957349	T	C	ENSMUST00000037854.14	1	ENSMUSG00000034480	missense	Y/H	442	Diaph2	ENSMUST00000037854.14:c.1324T>C	ENSMUSP00000039334.8:p.Tyr442His	H-2-Db	9	5	7	LLIRNDHYI	LLIRNDYYI	NetMHC	113.82	76.53	0.672	84	0.321	130.682	123.751	0.947	76.53	113.82	109.6	118.6	141.7816414	142.7644248	137.9018207	156.8808739	M2	-1	-0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.304	84	24	19	0.791666667	XqE3	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	sgMsh2	cell line
chrX	133588496	133588496	A	G	ENSMUST00000149154.7	1	ENSMUSG00000051323	missense	M/T	977	Pcdh19	ENSMUST00000149154.7:c.2930T>C	ENSMUSP00000116886.1:p.Met977Thr	H-2-Db	9	5	7	WMPRNPTPT	WMPRNPMPT	NetMHC	233.44	1377.14	5.899	44	0.318	363.988	1119.682	3.076	1377.14	233.44	3001.1	2034.1	862.223787	394.1123099	717.0839465	333.8643134	M2	-2.028571429	-1.557142857	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.375	44	0	0	NA	XqE3	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	sgMsh2	cell line
chrX	100541121	100541121	AC	A	ENSMUST00000037541.8	5	ENSMUSG00000067597	FS	H/X	107	Dgat2l6	ENSMUST00000037541.8:c.325del	ENSMUSP00000036845.8:p.His109MetfsTer26	H-2-Kb	8	22	0	STLLLSPL	NA	NetMHC	22.9	NA	NA	98	0.52	48.137	NA	NA	NA	22.9	NA	41.1	NA	55.17470248	NA	60.77710368	M2	1.728571429	1.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.499	98	0	0	NA	XqC3	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	sgMsh2	cell line
chrX	154484267	154484267	A	G	ENSMUST00000026029.1	1	ENSMUSG00000025051	missense	Y/C	134	Samt4	ENSMUST00000026029.1:c.401A>G	ENSMUSP00000026029.1:p.Tyr134Cys	H-2-Kb	8	11	1	CCYKFSTL	YCYKFSTL	NetMHCpan	24.9	14.2	0.57	98	0.469	51.968	31.668	0.609	18.9	35.27	14.2	24.9	58.71377443	71.07878574	44.43651588	68.66572344	M2	0.342857143	0.342857143	TRUE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.454	98	0	0	NA	XqF3	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	sgMsh2	cell line
chrX	13665387	13665387	T	C	ENSMUST00000053659.1	1	ENSMUSG00000047678	missense	V/A	58	Gpr82	ENSMUST00000053659.1:c.173T>C	ENSMUSP00000062535.1:p.Val58Ala	H-2-Kb	8	8	4	ANLATANL	ANLVTANL	NetMHC	110.98	65.42	0.589	117	0.376	127.103	105.176	0.827	65.42	110.98	97.7	151.4	116.611129	121.5458122	112.6522836	132.6600022	M2	0.5	0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.387	117	0	0	NA	XqA1.1	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	sgMsh2	cell line
chrX	100541121	100541121	AC	A	ENSMUST00000037541.8	5	ENSMUSG00000067597	FS	H/X	107	Dgat2l6	ENSMUST00000037541.8:c.325del	ENSMUSP00000036845.8:p.His109MetfsTer26	H-2-Kb	8	30	0	AFPGFSLL	NA	NetMHC	186.12	NA	NA	98	0.52	274.49	NA	NA	NA	186.12	NA	337.4	NA	240.8463117	NA	308.1342684	M2	1.485714286	1.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.499	98	0	0	NA	XqC3	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	sgMsh2	cell line
chrX	13156528	13156528	A	G	ENSMUST00000089302.10	1	ENSMUSG00000031010	missense	M/V	1956	Usp9x	ENSMUST00000089302.10:c.5866A>G	ENSMUSP00000086716.4:p.Met1956Val	H-2-Kb	8	4	8	YILFYERV	YILFYERM	SMM	224.771	252.197	1.122	148	0.486	268.862	240.139	0.893	228.08	325.11	90.5	290.7	252.1970487	224.7708563	267.1406633	247.0244836	M2	0.857142857	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.475	148	399	178	0.446115288	XqA1.1	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	sgMsh2	cell line
chrX	112120441	112120441	A	C	ENSMUST00000038546.6	1	ENSMUSG00000034555	missense	N/T	868	Tex16	ENSMUST00000038546.6:c.2603A>C	ENSMUSP00000048187.6:p.Asn868Thr	H-2-Kb	9	8	4	AALTYYSDI	AALNYYSDI	NetMHC	45.94	34.76	0.757	64	0.484	110.25	112.858	1.024	34.76	45.94	67.5	57.1	227.567375	236.1076181	158.2158541	163.3992279	M2	0.1	0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.491	64	0	0	NA	XqE1	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	sgMsh2	cell line
chrX	100541121	100541121	AC	A	ENSMUST00000037541.8	5	ENSMUSG00000067597	FS	H/X	107	Dgat2l6	ENSMUST00000037541.8:c.325del	ENSMUSP00000036845.8:p.His109MetfsTer26	H-2-Kb	9	29	0	LAFPGFSLL	NA	NetMHCpan	30.7	NA	NA	98	0.52	101.447	NA	NA	NA	61.93	NA	30.7	NA	140.9645794	NA	143.6316005	M2	1.485714286	1.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.499	98	0	0	NA	XqC3	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	sgMsh2	cell line
chrX	133896744	133896744	A	G	ENSMUST00000087557.11	1	ENSMUSG00000067377	missense	L/P	97	Tspan6	ENSMUST00000087557.11:c.290T>C	ENSMUSP00000084838.5:p.Leu97Pro	H-2-Kb	9	5	7	KLYAMFPTL	KLYAMFLTL	NetMHCpan	31.7	47.6	1.502	105	0.457	143.759	235.626	1.639	218.84	77.57	47.6	31.7	252.4120012	209.947158	266.8394274	229.2186762	M2	0.957142857	0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.452	105	2	2	1	XqE3	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	sgMsh2	cell line
chrX	100541121	100541121	AC	A	ENSMUST00000037541.8	5	ENSMUSG00000067597	FS	H/X	107	Dgat2l6	ENSMUST00000037541.8:c.325del	ENSMUSP00000036845.8:p.His109MetfsTer26	H-2-Kb	9	21	0	SSTLLLSPL	NA	NetMHC	93.75	NA	NA	98	0.52	225.402	NA	NA	NA	93.75	NA	206.4	NA	244.4049514	NA	314.2317036	M2	1.728571429	1.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.499	98	0	0	NA	XqC3	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	sgMsh2	cell line
chrX	13156528	13156528	A	G	ENSMUST00000089302.10	1	ENSMUSG00000031010	missense	M/V	1956	Usp9x	ENSMUST00000089302.10:c.5866A>G	ENSMUSP00000086716.4:p.Met1956Val	H-2-Kb	9	3	9	AYILFYERV	AYILFYERM	NetMHC	118.44	85.41	0.721	148	0.486	145.227	88.422	0.609	85.41	118.44	77.1	134.1	91.43448014	156.3543614	95.33447955	157.4889183	M2	0.857142857	0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.475	148	399	178	0.446115288	XqA1.1	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	sgMsh2	cell line
chrX	86747655	86747655	G	A	ENSMUST00000113966.7	5	ENSMUSG00000052372	missense	P/S	560	Il1rapl1	ENSMUST00000113966.7:c.1678C>T	ENSMUSP00000109599.1:p.Pro560Ser	H-2-Kb	9	10	2	MSFKRIEPI	MPFKRIEPI	NetMHCpan	58.3	2180.6	37.403	90	0.489	177.366	2262.711	12.757	4631.31	173.91	2180.6	58.3	2344.822647	233.4049166	1946.480243	180.8214719	M2	-0.242857143	-0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.499	90	0	0	NA	XqC1	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	sgMsh2	cell line
chrX	154484267	154484267	A	G	ENSMUST00000026029.1	1	ENSMUSG00000025051	missense	Y/C	134	Samt4	ENSMUST00000026029.1:c.401A>G	ENSMUSP00000026029.1:p.Tyr134Cys	H-2-Kb	9	10	2	ICCYKFSTL	IYCYKFSTL	SMMPMBEC	182.915	124.81	0.682	98	0.469	304.761	151.547	0.497	104.67	207.63	294.8	515.6	178.2830273	401.8925911	124.8101773	182.9152858	M2	0.342857143	0.9	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.454	98	0	0	NA	XqF3	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	sgMsh2	cell line
chrX	154484267	154484267	A	G	ENSMUST00000026029.1	1	ENSMUSG00000025051	missense	Y/C	134	Samt4	ENSMUST00000026029.1:c.401A>G	ENSMUSP00000026029.1:p.Tyr134Cys	H-2-Kb	9	11	1	CCYKFSTLV	YCYKFSTLV	NetMHC	230.24	197.55	0.858	98	0.469	279.061	245.695	0.88	197.55	230.24	186.9	288.9	293.8393807	269.2216614	308.4963287	372.6061339	M2	0.585714286	0.585714286	TRUE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.454	98	0	0	NA	XqF3	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	sgMsh2	cell line
chrX	133896744	133896744	A	G	ENSMUST00000087557.11	1	ENSMUSG00000067377	missense	L/P	97	Tspan6	ENSMUST00000087557.11:c.290T>C	ENSMUSP00000084838.5:p.Leu97Pro	H-2-Kb	9	8	4	AMFPTLIFL	AMFLTLIFL	SMM	229.673	136.493	0.594	105	0.457	282.66	212.178	0.751	211.91	265.82	891.2	299.5	136.4928808	229.67303	212.4467052	348.5378918	M2	2.2	2.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.452	105	2	2	1	XqE3	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	sgMsh2	cell line
chrX	100541121	100541121	AC	A	ENSMUST00000037541.8	5	ENSMUSG00000067597	FS	H/X	107	Dgat2l6	ENSMUST00000037541.8:c.325del	ENSMUSP00000036845.8:p.His109MetfsTer26	H-2-Kb	9	26	0	LSPLAFPGF	NA	NetMHC	290.86	NA	NA	98	0.52	490.875	NA	NA	NA	290.86	NA	455.6	NA	526.1505152	NA	767.8033453	M2	1.085714286	1.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.499	98	0	0	NA	XqC3	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	sgMsh2	cell line
chrX	150560905	150560905	C	T	ENSMUST00000066337.12	1	ENSMUSG00000025270	missense	S/F	332	Alas2	ENSMUST00000066337.12:c.995C>T	ENSMUSP00000066040.6:p.Ser332Phe	H-2-Kb	9	4	8	VAFETVHFM	VAFETVHSM	NetMHCpan	190.3	145.9	0.767	36	0.472	345.568	269.434	0.78	240.94	292.01	145.9	190.3	297.9270937	399.1259819	400.1750427	542.312981	M2	0.614285714	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.527	36	1	0	0	XqF3	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	sgMsh2	cell line
chrX	9849913	9849913	T	C	ENSMUST00000057113.2	NA	ENSMUSG00000048994	missense	S/P	55	H2al3	ENSMUST00000057113.2:c.163T>C	ENSMUSP00000052025.1:p.Ser55Pro	H-2-Kb	9	6	6	LNYVTPSIL	LNYVTSSIL	SMM	217.325	118.334	0.545	138	0.5	286.985	138.425	0.482	151.65	320.37	125.2	253.6	118.334124	217.325156	242.8007366	383.9281887	M2	1.157142857	1.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.518	138	0	0	NA	XqA1.1	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	sgMsh2	cell line
chrX	110814921	110814921	AC	A	ENSMUST00000078229.4	NA	ENSMUSG00000056854	FS	P/X	153	Pou3f4	ENSMUST00000078229.4:c.458del	ENSMUSP00000077354.3:p.Pro153HisfsTer88	H-2-Kb	9	41	0	TLMKRLQPL	NA	NetMHCpan	212.6	NA	NA	33	0.424	362.029	NA	NA	NA	369.04	NA	212.6	NA	464.6329446	NA	355.017695	M2	-0.571428571	-0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.441	33	0	0	NA	XqE1	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	sgMsh2	cell line
chrX	100541121	100541121	AC	A	ENSMUST00000037541.8	5	ENSMUSG00000067597	FS	H/X	107	Dgat2l6	ENSMUST00000037541.8:c.325del	ENSMUSP00000036845.8:p.His109MetfsTer26	H-2-Kb	9	16	0	SVMVPSSTL	NA	NetMHC	382.77	NA	NA	98	0.52	454.801	NA	NA	NA	382.77	NA	497.4	NA	412.2019102	NA	883.5883884	M2	0.857142857	0.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.499	98	0	0	NA	XqC3	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	sgMsh2	cell line
chrX	100541121	100541121	AC	A	ENSMUST00000037541.8	5	ENSMUSG00000067597	FS	H/X	107	Dgat2l6	ENSMUST00000037541.8:c.325del	ENSMUSP00000036845.8:p.His109MetfsTer26	H-2-Kb	9	17	0	VMVPSSTLL	NA	SMM	236.108	NA	NA	98	0.52	381.084	NA	NA	NA	386.98	NA	389.1	NA	236.1076181	NA	375.1889162	M2	1.128571429	1.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.499	98	0	0	NA	XqC3	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	sgMsh2	cell line
chrX	100541121	100541121	AC	A	ENSMUST00000037541.8	5	ENSMUSG00000067597	FS	H/X	107	Dgat2l6	ENSMUST00000037541.8:c.325del	ENSMUSP00000036845.8:p.His109MetfsTer26	H-2-Kb	9	7	7	IILSHPMAF	IILSHPHGI	SMM	392.744	734.7	1.871	98	0.52	440.625	996.154	2.261	1162.17	397.65	1025.7	483.6	734.6999326	392.7443988	966.6071427	536.1051757	M2	0.671428571	1.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.499	98	0	0	NA	XqC3	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	sgMsh2	cell line
chrX	101673545	101673545	GA	G	ENSMUST00000044475.4	1	ENSMUSG00000034160	FS	K/X	757	Ogt	ENSMUST00000044475.4:c.2271del	ENSMUSP00000045409.4:p.Lys757AsnfsTer23	H-2-Kb	9	22	0	VTQLLICPL	NA	NetMHCpan	324.4	NA	NA	69	0.507	478.008	NA	NA	NA	401.25	NA	324.4	NA	554.7662088	NA	602.9065471	M2	1.9	2.085714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.508	69	98	0	0	XqD	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	sgMsh2	cell line
chr1	165539831	165539831	A	G	ENSMUST00000027852.14	1	ENSMUSG00000026567	missense	T/A	557	Adcy10	ENSMUST00000027852.14:c.1669A>G	ENSMUSP00000027852.8:p.Thr557Ala	H-2-Db	9	4	8	SFHQNFYAI	SFHQNFYTI	SMM	105.104	62.176	0.592	270	0.2	167.108	96.911	0.58	73.99	141.21	379.5	647.3	62.17560216	105.1041828	119.8312253	193.0056399	M3_p20	-0.342857143	-0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.196	270	0	0	NA	1qH2.3	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	1	0.867900931	sgMsh2	cell line
chr1	92588592	92588592	A	C	ENSMUST00000190505.2	3	ENSMUSG00000046300	missense	K/N	87	Olfr1412	ENSMUST00000190505.2:c.261A>C	ENSMUSP00000150943.1:p.Lys87Asn	H-2-Db	9	11	1	NAMANFYSS	KAMANFYSS	SMM	238.572	187.767	0.787	223	0.22	448.615	248.476	0.554	418.17	714	263.3	574.7	187.7673167	238.5722904	233.6522675	322.5299134	M3_p20	0.014285714	0.385714286	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.241	223	0	0	NA	1qD	chr1-85663222-127999769	4	3	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr1	74594618	74594618	CT	C	ENSMUST00000027357.11	1	ENSMUSG00000026171	FS	K/X	245	Rnf25	ENSMUST00000027357.11:c.734del	ENSMUSP00000027357.5:p.Lys245ArgfsTer31	H-2-Kb	8	24	0	TSLAFSSL	NA	NetMHC	4.67	NA	NA	173	0.422	8.657	NA	NA	NA	4.67	NA	6.1	NA	11.21346934	NA	11.74194387	M3_p20	1.4	1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.41	173	0	0	NA	1qC3	chr1-3216742-84929848	4	2	2	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr1	92573497	92573497	T	C	ENSMUST00000214239.1	5	ENSMUSG00000058904	missense	F/L	109	Olfr1413	ENSMUST00000214239.1:c.325T>C	ENSMUSP00000150792.1:p.Phe109Leu	H-2-Kb	8	8	4	TQFLFFSL	TQFFFFSL	NetMHC	7.41	14.4	1.943	293	0.184	9.997	12.057	1.206	14.4	7.41	8.2	10	12.09873599	10.7830098	12.01544888	9.99401507	M3_p20	1.671428571	1.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.19	293	0	0	NA	1qD	chr1-85663222-127999769	4	3	1	0.91	4.029540036	NA	1	0.841332535	sgMsh2	cell line
chr1	172246733	172246733	CA	C	ENSMUST00000111243.1	5	ENSMUSG00000007107	FS	W/X	318	Atp1a4	ENSMUST00000111243.1:c.952del	ENSMUSP00000106874.1:p.Trp318GlyfsTer37	H-2-Kb	8	7	5	VSFFGSRL	VSFFWLSI	NetMHCpan	6.8	13.2	1.941	173	0.277	14.817	50.863	3.433	61.62	12.7	13.2	6.8	55.30189331	19.71242255	46.42372661	16.93323751	M3_p20	0.414285714	0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.281	173	0	0	NA	1qH3	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr1	127412243	127412243	G	T	ENSMUST00000038361.10	1	ENSMUSG00000036155	missense	V/L	454	Mgat5	ENSMUST00000038361.10:c.1360G>T	ENSMUSP00000038359.4:p.Val454Leu	H-2-Kb	8	4	8	QSLVYGKL	QSLVYGKV	NetMHC	15.26	75.8	4.967	115	0.278	52.362	246.565	4.709	75.8	15.26	265.7	39.6	232.6697911	65.12383991	260.4593785	71.90183929	M3_p20	0.771428571	0.771428571	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.288	115	0	0	NA	1qE3	chr1-85663222-127999769	4	3	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr1	172246733	172246733	CA	C	ENSMUST00000111243.1	5	ENSMUSG00000007107	FS	W/X	318	Atp1a4	ENSMUST00000111243.1:c.952del	ENSMUSP00000106874.1:p.Trp318GlyfsTer37	H-2-Kb	8	21	0	WMLSFSLL	NA	NetMHC	40.03	NA	NA	173	0.277	68.051	NA	NA	NA	40.03	NA	56.9	NA	87.44601036	NA	79.2027024	M3_p20	2.071428571	2.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.281	173	0	0	NA	1qH3	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr1	164257135	164257135	T	C	ENSMUST00000044021.11	1	ENSMUSG00000040918	missense	V/A	198	Slc19a2	ENSMUST00000044021.11:c.593T>C	ENSMUSP00000037561.5:p.Val198Ala	H-2-Kb	8	6	6	ISLTCASV	ISLTCVSV	NetMHC	51.16	308.97	6.039	340	0.279	78.087	277.713	3.556	308.97	51.16	437.3	155.2	246.456343	85.25895396	204.5219854	70.91530907	M3_p20	1.428571429	1.471428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.309	340	0	0	NA	1qH2.2	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr1	92573497	92573497	T	C	ENSMUST00000214239.1	5	ENSMUSG00000058904	missense	F/L	109	Olfr1413	ENSMUST00000214239.1:c.325T>C	ENSMUSP00000150792.1:p.Phe109Leu	H-2-Kb	8	9	3	QFLFFSLL	QFFFFSLL	NetMHCpan	54.9	24.2	0.441	293	0.184	76.332	26.545	0.348	33.77	77.72	24.2	54.9	17.93659491	74.94454029	28.88949831	124.9510759	M3_p20	2.714285714	2.714285714	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.19	293	0	0	NA	1qD	chr1-85663222-127999769	4	3	1	0.91	4.029540036	NA	1	0.841332535	sgMsh2	cell line
chr1	130655982	130655982	G	A	ENSMUST00000027657.13	1	ENSMUSG00000026405	missense	T/I	83	C4bp	ENSMUST00000027657.13:c.248C>T	ENSMUSP00000027657.7:p.Thr83Ile	H-2-Kb	8	10	2	TILKYECL	TTLKYECL	SMMPMBEC	182.28	174.88	0.959	208	0.197	207.754	228.089	1.098	260.41	219.74	261.8	309.4	195.7672319	195.7672319	174.8799418	182.2804114	M3_p20	0.842857143	0.842857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.198	208	0	0	NA	1qE4	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	1	0.876757063	sgMsh2	cell line
chr1	23370041	23370041	CT	C	ENSMUST00000027343.5	3	ENSMUSG00000026158	FS	K/X	368	Ogfrl1	ENSMUST00000027343.5:c.1103del	ENSMUSP00000027343.5:p.Lys368ArgfsTer83	H-2-Kb	8	40	0	KTVLLTNL	NA	NetMHCpan	199	NA	NA	69	0.217	255.732	NA	NA	NA	241.23	NA	199	NA	275.892567	NA	270.2340064	M3_p20	1.528571429	1.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.201	69	0	0	NA	1qA5	chr1-3216742-84929848	4	2	2	0.91	4.029540036	NA	1	0.890041261	sgMsh2	cell line
chr1	37807068	37807068	T	C	ENSMUST00000041815.14	1	ENSMUSG00000060771	missense	I/V	326	Tsga10	ENSMUST00000041815.14:c.976A>G	ENSMUSP00000048859.8:p.Ile326Val	H-2-Kb	8	11	1	VSRMRRQL	ISRMRRQL	SMMPMBEC	230.537	224.771	0.975	118	0.246	277.11	292.987	1.057	284.16	271.25	1438.9	1646.9	301.8144301	282.9697428	224.7708563	230.5366617	M3_p20	-1.728571429	-1.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.229	118	0	0	NA	1qB	chr1-3216742-84929848	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr1	74594618	74594618	CT	C	ENSMUST00000027357.11	1	ENSMUSG00000026171	FS	K/X	245	Rnf25	ENSMUST00000027357.11:c.734del	ENSMUSP00000027357.5:p.Lys245ArgfsTer31	H-2-Kb	8	26	0	LAFSSLLL	NA	NetMHCpan	157.3	NA	NA	173	0.422	410.488	NA	NA	NA	334.86	NA	157.3	NA	486.1160944	NA	514.9202839	M3_p20	2.057142857	2.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.41	173	0	0	NA	1qC3	chr1-3216742-84929848	4	2	2	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr1	144139554	144139554	T	G	ENSMUST00000111941.1	1	ENSMUSG00000051079	missense	K/Q	142	Rgs13	ENSMUST00000111941.1:c.424A>C	ENSMUSP00000107572.1:p.Lys142Gln	H-2-Kb	8	11	1	QSEMYQQL	KSEMYQQL	SMMPMBEC	286.246	135.438	0.473	447	0.32	400.316	257.12	0.642	295.09	446.03	493.4	1564.5	219.1492557	354.6010359	135.4378341	286.246378	M3_p20	-0.985714286	-0.985714286	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.324	447	0	0	NA	1qF	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr1	36316314	36316314	C	A	ENSMUST00000097778.8	1	ENSMUSG00000037447	missense	P/H	66	Arid5a	ENSMUST00000097778.8:c.197C>A	ENSMUSP00000095385.2:p.Pro66His	H-2-Kb	8	7	5	RSQSHTQL	RSQSPTQL	SMM	239.188	1335.796	5.585	28	0.357	394.128	3510.897	8.908	5437.85	511.09	7768.4	1494.3	1335.795574	239.1883374	1583.944645	277.1660292	M3_p20	-1.242857143	-1.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.334	28	0	0	NA	1qB	chr1-3216742-84929848	4	2	2	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr1	128236639	128236639	T	C	ENSMUST00000036288.10	5	ENSMUSG00000056211	missense	S/P	1097	R3hdm1	ENSMUST00000036288.10:c.3289T>C	ENSMUSP00000043103.4:p.Ser1097Pro	H-2-Kb	8	5	7	VLATFPPI	VLATFPSI	NetMHCpan	126.5	191	1.51	253	0.158	379.113	788.522	2.08	1354.05	567.82	191	126.5	773.9982879	374.7485835	803.0452175	383.4775994	M3_p20	1.285714286	1.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.171	253	0	0	NA	1qE3	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	1	0.757199282	sgMsh2	cell line
chr1	92573497	92573497	T	C	ENSMUST00000214239.1	5	ENSMUSG00000058904	missense	F/L	109	Olfr1413	ENSMUST00000214239.1:c.325T>C	ENSMUSP00000150792.1:p.Phe109Leu	H-2-Kb	9	8	4	TQFLFFSLL	TQFFFFSLL	NetMHCpan	5.6	5.2	0.929	293	0.184	16.053	18.853	1.174	10.41	6.69	5.2	5.6	27.29669078	25.41616376	30.14740949	31.71392538	M3_p20	2.714285714	2.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.19	293	0	0	NA	1qD	chr1-85663222-127999769	4	3	1	0.91	4.029540036	NA	1	0.841332535	sgMsh2	cell line
chr1	74594618	74594618	CT	C	ENSMUST00000027357.11	1	ENSMUSG00000026171	FS	K/X	245	Rnf25	ENSMUST00000027357.11:c.734del	ENSMUSP00000027357.5:p.Lys245ArgfsTer31	H-2-Kb	9	24	0	TSLAFSSLL	NA	NetMHC	12.89	NA	NA	173	0.422	58.35	NA	NA	NA	12.89	NA	18.5	NA	98.19966359	NA	134.9739632	M3_p20	2.057142857	2.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.41	173	0	0	NA	1qC3	chr1-3216742-84929848	4	2	2	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr1	56891225	56891225	T	G	ENSMUST00000114415.9	1	ENSMUSG00000038331	missense	N/T	213	Satb2	ENSMUST00000114415.9:c.638A>C	ENSMUSP00000110057.3:p.Asn213Thr	H-2-Kb	9	4	8	VNSTYYATV	VNSTYYANV	NetMHC	12.91	6.03	0.467	289	0.353	53.822	44.025	0.818	6.03	12.91	9.3	13.4	93.34907095	111.4576803	78.74989801	94.24319478	M3_p20	0.171428571	0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.357	289	0	0	NA	1qC1.3	chr1-3216742-84929848	4	2	2	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr1	128300744	128300744	T	C	ENSMUST00000073490.6	2	ENSMUSG00000026354	missense	N/S	1004	Lct	ENSMUST00000073490.6:c.3011A>G	ENSMUSP00000073190.6:p.Asn1004Ser	H-2-Kb	9	5	7	QGVDYYSKL	QGVDYYNKL	NetMHC	37.85	77.13	2.038	173	0.173	127.881	182.193	1.425	77.13	37.85	122.7	55.2	257.1046906	224.4450336	241.6851686	200.5626226	M3_p20	-0.4	-0.4	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.182	173	0	0	NA	1qE3	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	1	0.805908007	sgMsh2	cell line
chr1	20935005	20935005	T	G	ENSMUST00000189400.6	1	ENSMUSG00000025931	missense	L/V	128	Paqr8	ENSMUST00000189400.6:c.382T>G	ENSMUSP00000141054.1:p.Leu128Val	H-2-Kb	9	3	9	ITYLTCSLV	ITYLTCSLL	NetMHC	51.11	20.64	0.404	99	0.232	138.197	48.33	0.35	20.64	51.11	27.3	120.4	69.36014622	155.9947563	94.8964574	212.4467052	M3_p20	1.642857143	1.642857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.245	99	0	0	NA	1qA4	chr1-3216742-84929848	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr1	172246733	172246733	CA	C	ENSMUST00000111243.1	5	ENSMUSG00000007107	FS	W/X	318	Atp1a4	ENSMUST00000111243.1:c.952del	ENSMUSP00000106874.1:p.Trp318GlyfsTer37	H-2-Kb	9	23	0	LSFSLLVSL	NA	NetMHCpan	64.8	NA	NA	173	0.277	114.871	NA	NA	NA	102.36	NA	64.8	NA	127.382568	NA	136.536888	M3_p20	2.4	2.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.281	173	0	0	NA	1qH3	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr1	74594618	74594618	CT	C	ENSMUST00000027357.11	1	ENSMUSG00000026171	FS	K/X	245	Rnf25	ENSMUST00000027357.11:c.734del	ENSMUSP00000027357.5:p.Lys245ArgfsTer31	H-2-Kb	9	26	0	LAFSSLLLL	NA	SMM	159.261	NA	NA	173	0.422	204.075	NA	NA	NA	192.85	NA	215.3	NA	159.261206	NA	229.2186762	M3_p20	2.342857143	2.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.41	173	0	0	NA	1qC3	chr1-3216742-84929848	4	2	2	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr1	128236639	128236639	T	C	ENSMUST00000036288.10	5	ENSMUSG00000056211	missense	S/P	1097	R3hdm1	ENSMUST00000036288.10:c.3289T>C	ENSMUSP00000043103.4:p.Ser1097Pro	H-2-Kb	9	4	8	TVLATFPPI	TVLATFPSI	NetMHCpan	156.6	241.4	1.542	253	0.158	337.842	596.246	1.765	373.82	205.67	241.4	156.6	818.6721187	470.0131405	895.8803273	523.901932	M3_p20	1.285714286	1.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.171	253	0	0	NA	1qE3	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	1	0.757199282	sgMsh2	cell line
chr1	172246733	172246733	CA	C	ENSMUST00000111243.1	5	ENSMUSG00000007107	FS	W/X	318	Atp1a4	ENSMUST00000111243.1:c.952del	ENSMUSP00000106874.1:p.Trp318GlyfsTer37	H-2-Kb	9	20	0	GWMLSFSLL	NA	SMM	154.921	NA	NA	173	0.277	295.795	NA	NA	NA	319.79	NA	495.6	NA	154.920896	NA	271.8003427	M3_p20	2.071428571	2.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.281	173	0	0	NA	1qH3	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr1	172246733	172246733	CA	C	ENSMUST00000111243.1	5	ENSMUSG00000007107	FS	W/X	318	Atp1a4	ENSMUST00000111243.1:c.952del	ENSMUSP00000106874.1:p.Trp318GlyfsTer37	H-2-Kb	9	21	0	WMLSFSLLV	NA	SMM	192.801	NA	NA	173	0.277	393.804	NA	NA	NA	424.32	NA	1728.5	NA	192.8013187	NA	363.2871195	M3_p20	2.4	2.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.281	173	0	0	NA	1qH3	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr1	127412243	127412243	G	T	ENSMUST00000038361.10	1	ENSMUSG00000036155	missense	V/L	454	Mgat5	ENSMUST00000038361.10:c.1360G>T	ENSMUSP00000038359.4:p.Val454Leu	H-2-Kb	9	6	6	LVYGKLDSF	LVYGKVDSF	SMM	278.042	542.138	1.95	115	0.278	372.202	726.824	1.953	911.51	463.7	1434.9	1078.9	542.1381881	278.0417415	480.0096849	280.704904	M3_p20	-0.471428571	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.288	115	0	0	NA	1qE3	chr1-85663222-127999769	4	3	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr10	5228100	5228100	T	G	ENSMUST00000215295.1	5	ENSMUSG00000096054	missense	K/N	4791	Syne1	ENSMUST00000215295.1:c.14373A>C	ENSMUSP00000150262.1:p.Lys4791Asn	H-2-Db	9	9	3	QANVNEETL	QAKVNEETL	NetMHC	39.37	362.31	9.203	105	0.286	44.8	257.197	5.741	362.31	39.37	353.1	58.3	161.2946639	43.51309752	149.8200715	46.08610447	M3_p20	-0.957142857	-0.957142857	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.279	105	0	0	NA	10qA1	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr1	174158781	174158781	T	C	ENSMUST00000213748.1	5	ENSMUSG00000055033	missense	F/L	3	Olfr420	ENSMUST00000213748.1:c.7T>C	ENSMUSP00000149052.1:p.Phe3Leu	H-2-Db	9	1	3	MGLSNWTTA	MGFSNWTTA	NetMHC	58.65	200.38	3.417	254	0.146	125.847	225.949	1.795	200.38	58.65	130.3	108.6	287.4881843	143.0935308	251.518538	143.7374712	M3_p20	-0.142857143	-0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.156	254	0	0	NA	1qH3	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	1	0.690778292	sgMsh2	cell line
chr10	27235785	27235785	CA	C	ENSMUST00000092639.11	5	ENSMUSG00000019899	FS	F/X	746	Lama2	ENSMUST00000092639.11:c.2238del	ENSMUSP00000090304.5:p.Phe746LeufsTer25	H-2-Db	9	12	0	VAFVNHVSA	NA	SMMPMBEC	186.883	NA	NA	84	0.262	199.684	NA	NA	NA	214.1	NA	210.3	NA	189.0688576	NA	186.8830873	M3_p20	0.785714286	1.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.265	84	0	0	NA	10qA4	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr10	27235785	27235785	CA	C	ENSMUST00000092639.11	5	ENSMUSG00000019899	FS	F/X	746	Lama2	ENSMUST00000092639.11:c.2238del	ENSMUSP00000090304.5:p.Phe746LeufsTer25	H-2-Db	9	19	0	SALLMQKPV	NA	SMM	193.028	NA	NA	84	0.262	282.384	NA	NA	NA	561.15	NA	362.2	NA	193.0278618	NA	202.5676081	M3_p20	0.671428571	0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.265	84	0	0	NA	10qA4	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr1	175153188	175153188	T	C	ENSMUST00000195324.5	5	ENSMUSG00000026527	missense	Y/C	90	Rgs7	ENSMUST00000195324.5:c.269A>G	ENSMUSP00000141380.1:p.Tyr90Cys	H-2-Db	9	7	5	AAHGCFFPI	AAHGYFFPI	NetMHCpan	376.9	606.1	1.608	259	0.32	430.644	828.956	1.925	2188.87	824.3	606.1	376.9	791.8082091	435.1309752	866.1039116	426.1573665	M3_p20	1.057142857	1.157142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.322	259	0	0	NA	1qH3	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr10	50754122	50754122	G	T	ENSMUST00000035606.9	5	ENSMUSG00000038774	missense	S/I	1769	Ascc3	ENSMUST00000035606.9:c.5306G>T	ENSMUSP00000036726.8:p.Ser1769Ile	H-2-Kb	8	8	4	MNPIYYSL	MNPSYYSL	NetMHC	10.83	12.27	1.133	230	0.287	32.613	36.465	1.118	12.27	10.83	28.9	21.7	44.02911945	43.52512229	62.62388407	64.23030732	M3_p20	-0.028571429	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.29	230	0	0	NA	10qB3	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr1	174041991	174041991	C	T	ENSMUST00000214690.1	5	ENSMUSG00000045381	missense	L/F	14	Olfr433	ENSMUST00000214690.1:c.40C>T	ENSMUSP00000149005.1:p.Leu14Phe	H-2-Kb	8	7	5	RTFIFAGF	RTFILAGF	NetMHC	11.47	340.48	29.684	367	0.248	27.277	357.183	13.095	340.48	11.47	171.8	19.5	482.7696948	45.7867692	373.8866857	35.05419514	M3_p20	1.942857143	1.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.244	367	0	0	NA	1qH3	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr1	174448814	174448814	A	G	ENSMUST00000194229.2	3	ENSMUSG00000066671	missense	M/V	64	Olfr220	ENSMUST00000194229.2:c.190A>G	ENSMUSP00000141919.1:p.Met64Val	H-2-Kb	8	11	1	VYFFLSHL	MYFFLSHL	NetMHCpan	9.4	18.4	1.957	381	0.113	45.872	102.23	2.229	79.22	33.03	18.4	9.4	125.2391179	58.71377443	128.7478543	60.77710368	M3_p20	1.128571429	1.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.115	381	0	0	NA	1qH3	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	1	0.509227587	sgMsh2	cell line
chr10	27235785	27235785	CA	C	ENSMUST00000092639.11	5	ENSMUSG00000019899	FS	F/X	746	Lama2	ENSMUST00000092639.11:c.2238del	ENSMUSP00000090304.5:p.Phe746LeufsTer25	H-2-Kb	8	15	0	VNHVSALL	NA	NetMHC	78.77	NA	NA	84	0.262	119.512	NA	NA	NA	78.77	NA	88.8	NA	150.2242346	NA	171.2931516	M3_p20	0.871428571	0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.265	84	0	0	NA	10qA4	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr10	34044091	34044091	G	A	ENSMUST00000048052.6	1	ENSMUSG00000039508	missense	A/V	60	Calhm4	ENSMUST00000048052.6:c.179C>T	ENSMUSP00000042466.5:p.Ala60Val	H-2-Kb	8	4	8	SAFLVVPV	SAFLVVPA	NetMHC	93.28	1313.85	14.085	137	0.248	117.213	797.972	6.808	1313.85	93.28	868.6	112.6	727.3442335	121.8260042	658.7793843	137.0061303	M3_p20	2.771428571	2.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.271	137	0	0	NA	10qB1	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr10	117671739	117671739	A	G	ENSMUST00000020399.5	1	ENSMUSG00000020183	missense	N/D	254	Cpm	ENSMUST00000020399.5:c.760A>G	ENSMUSP00000020399.5:p.Asn254Asp	H-2-Kb	8	11	1	DGYSWYPL	NGYSWYPL	SMMPMBEC	105.133	66.182	0.63	104	0.308	111.803	58.341	0.522	44.26	117.5	50.5	215.1	76.51384027	106.106014	66.18201718	105.1332282	M3_p20	-0.357142857	-0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.348	104	0	0	NA	10qD2	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr10	80931054	80931054	C	T	ENSMUST00000015456.9	1	ENSMUSG00000015312	missense	L/F	58	Gadd45b	ENSMUST00000015456.9:c.172C>T	ENSMUSP00000015456.8:p.Leu58Phe	H-2-Kb	8	7	5	VVLCFLAI	VVLCLLAI	NetMHCpan	67	931.1	13.897	71	0.366	109.566	1162.243	10.608	1671.74	130.41	931.1	67	1103.417837	104.6501849	1221.068422	114.482736	M3_p20	3.342857143	3.342857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.391	71	0	0	NA	10qC1	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr10	79743534	79743534	T	C	ENSMUST00000020580.12	1	ENSMUSG00000020329	missense	T/A	128	Polrmt	ENSMUST00000020580.12:c.382A>G	ENSMUSP00000020580.6:p.Thr128Ala	H-2-Kb	8	5	7	LTQEFWAL	LTQEFWTL	SMM	129.045	214.655	1.663	38	0.211	166.469	236.66	1.422	958.43	286.43	196.6	168.6	214.6545013	129.0446488	258.6663888	164.3387578	M3_p20	-0.028571429	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.259	38	0	0	NA	10qC1	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr10	34044091	34044091	G	A	ENSMUST00000048052.6	1	ENSMUSG00000039508	missense	A/V	60	Calhm4	ENSMUST00000048052.6:c.179C>T	ENSMUSP00000042466.5:p.Ala60Val	H-2-Kb	8	8	4	VVPVLILL	VVPALILL	NetMHC	305.21	396.64	1.3	137	0.248	381.081	414.946	1.089	396.64	305.21	390.4	346.5	433.2514252	415.6616909	541.6765067	459.9811133	M3_p20	3.242857143	3.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.271	137	0	0	NA	10qB1	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr1	173937892	173937892	AT	A	ENSMUST00000129829.7	1	ENSMUSG00000039997	FS	M/X	39	Ifi203	ENSMUST00000129829.7:c.115del	ENSMUSP00000122424.1:p.Met39CysfsTer24	H-2-Kb	9	16	0	IGFSWRTGL	NA	NetMHC	12.97	NA	NA	188	0.218	71.775	NA	NA	NA	12.97	NA	13.5	NA	130.0498932	NA	148.3371737	M3_p20	-0.1	-9.52E-17	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.207	188	0	0	NA	1qH3	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	1	0.916609657	sgMsh2	cell line
chr10	121596189	121596189	T	C	ENSMUST00000039810.7	5	ENSMUSG00000034667	missense	I/V	935	Xpot	ENSMUST00000039810.7:c.2803A>G	ENSMUSP00000043488.7:p.Ile935Val	H-2-Kb	9	10	2	IVQEFCQAL	IIQEFCQAL	NetMHC	29.19	27.49	0.942	117	0.359	210.663	225.97	1.073	27.49	29.19	92.1	72.9	359.8404656	348.4255546	390.1665199	383.0451784	M3_p20	0.057142857	0.5	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.361	117	0	0	NA	10qD2	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr1	174250687	174250687	C	A	ENSMUST00000214725.1	5	ENSMUSG00000050788	missense	R/M	80	Olfr419	ENSMUST00000214725.1:c.239G>T	ENSMUSP00000149512.1:p.Arg80Met	H-2-Kb	9	8	4	IIPMMLSGL	IIPRMLSGL	NetMHC	37.12	30.55	0.823	338	0.142	167.699	194.431	1.159	30.55	37.12	107.6	103.6	281.2613131	231.7981684	383.0451784	291.9106903	M3_p20	1.228571429	2.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.156	338	0	0	NA	1qH3	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	1	0.690778292	sgMsh2	cell line
chr1	174448814	174448814	A	G	ENSMUST00000194229.2	3	ENSMUSG00000066671	missense	M/V	64	Olfr220	ENSMUST00000194229.2:c.190A>G	ENSMUSP00000141919.1:p.Met64Val	H-2-Kb	9	10	2	PVYFFLSHL	PMYFFLSHL	SMM	29.793	13.744	0.461	381	0.113	37.756	27.523	0.729	44.85	51.57	32.8	30.3	13.74390042	29.79270937	22.24590099	45.21161284	M3_p20	1.128571429	1.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.115	381	0	0	NA	1qH3	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	1	0.509227587	sgMsh2	cell line
chr1	173677774	173677774	A	T	ENSMUST00000085876.11	1	ENSMUSG00000066677	missense	K/M	30	Ifi208	ENSMUST00000085876.11:c.89A>T	ENSMUSP00000083039.3:p.Lys30Met	H-2-Kb	9	5	7	YNFRALMSL	YNFRALKSL	NetMHCpan	44.6	122.2	2.74	493	0.101	204.63	446.159	2.18	350.18	75.75	122.2	44.6	542.1381881	333.5108752	697.02764	452.1161284	M3_p20	1.257142857	1.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.098	493	0	0	NA	1qH3	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	1	0.433950465	sgMsh2	cell line
chr10	28981546	28981546	T	C	ENSMUST00000015663.6	1	ENSMUSG00000015519	missense	N/S	205	2310057J18Rik	ENSMUST00000015663.6:c.614A>G	ENSMUSP00000015663.6:p.Asn205Ser	H-2-Kb	9	10	2	LSYLWEAHA	LNYLWEAHA	NetMHC	76.96	130.41	1.695	132	0.409	254.092	276.207	1.087	130.41	76.96	339.3	286.8	280.61443	263.6999212	271.8003427	244.4837509	M3_p20	-0.214285714	0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.4	132	0	0	NA	10qA4	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr10	50754122	50754122	G	T	ENSMUST00000035606.9	5	ENSMUSG00000038774	missense	S/I	1769	Ascc3	ENSMUST00000035606.9:c.5306G>T	ENSMUSP00000036726.8:p.Ser1769Ile	H-2-Kb	9	7	5	IMNPIYYSL	IMNPSYYSL	NetMHCpan	106.8	122.5	1.147	230	0.287	213.697	155.456	0.727	120.49	198.25	122.5	106.8	188.4126249	229.1447967	231.3396105	261.9690589	M3_p20	-0.028571429	0.457142857	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.29	230	0	0	NA	10qB3	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr1	180421278	180421278	G	A	ENSMUST00000070181.6	1	ENSMUSG00000038855	missense	A/T	849	Itpkb	ENSMUST00000070181.6:c.2545G>A	ENSMUSP00000069851.6:p.Ala849Thr	H-2-Kb	9	8	4	ILITYRDRL	ILIAYRDRL	NetMHCpan	137.5	173.5	1.262	186	0.285	413.795	497.231	1.202	272.94	221.9	173.5	137.5	1059.522052	946.4768588	721.5227015	605.6894373	M3_p20	-0.885714286	0.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.276	186	0	0	NA	1qH4	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr10	19849510	19849510	A	G	ENSMUST00000059805.5	1	ENSMUSG00000050473	missense	L/P	200	Slc35d3	ENSMUST00000059805.5:c.599T>C	ENSMUSP00000060589.4:p.Leu200Pro	H-2-Kb	9	4	8	IAVSATPPL	IAVSATPLL	NetMHCpan	274.8	607.2	2.21	90	0.311	365.277	632.215	1.731	657.23	359.78	607.2	274.8	472.1826226	370.7746213	755.5270188	542.312981	M3_p20	0.728571429	1.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.342	90	0	0	NA	10qA3	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr1	194751529	194751529	G	T	ENSMUST00000027952.11	1	ENSMUSG00000026640	missense	D/Y	629	Plxna2	ENSMUST00000027952.11:c.1885G>T	ENSMUSP00000027952.5:p.Asp629Tyr	H-2-Kb	9	11	1	YWFGLELQL	DWFGLELQL	SMM	191.915	475.456	2.477	151	0.172	340.82	1223.579	3.59	1750.13	443.27	3402.6	806.9	475.4556362	191.9154771	697.02764	238.3691237	M3_p20	0.971428571	0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.17	151	0	0	NA	1qH6	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	1	0.752771216	sgMsh2	cell line
chr10	34044091	34044091	G	A	ENSMUST00000048052.6	1	ENSMUSG00000039508	missense	A/V	60	Calhm4	ENSMUST00000048052.6:c.179C>T	ENSMUSP00000042466.5:p.Ala60Val	H-2-Kb	9	4	8	SAFLVVPVL	SAFLVVPAL	NetMHCpan	260.6	103.6	0.398	137	0.248	456.597	235.848	0.517	123.27	447.34	103.6	260.6	348.4255546	491.0322312	376.053816	465.8541836	M3_p20	3.057142857	3.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.271	137	0	0	NA	10qB1	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr1	182341335	182341335	G	T	ENSMUST00000051431.9	1	ENSMUSG00000047539	missense	S/R	85	Fbxo28	ENSMUST00000051431.9:c.255C>A	ENSMUSP00000054718.4:p.Ser85Arg	H-2-Kb	9	5	7	MSYDEIRQL	MSYDEISQL	NetMHCpan	157.9	95.7	0.606	47	0.191	330.936	175.147	0.529	291.06	459.17	95.7	157.9	180.7631913	336.5968133	169.531342	325.2744865	M3_p20	-1.142857143	-1.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.249	47	0	0	NA	1qH5	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr1	192847134	192847134	A	G	ENSMUST00000155579.7	1	ENSMUSG00000016262	missense	Y/H	125	Sertad4	ENSMUST00000155579.7:c.373T>C	ENSMUSP00000116176.1:p.Tyr125His	H-2-Kb	9	10	2	VHLRRSVLI	VYLRRSVLI	SMM	451.97	325.919	0.721	176	0.148	477.751	393.431	0.824	435.1	490.72	734	686.4	325.9192408	451.9704069	351.7628732	464.7827487	M3_p20	0.928571429	0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.157	176	0	0	NA	1qH6	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	1	0.695206358	sgMsh2	cell line
chr10	23897365	23897365	T	C	ENSMUST00000041416.7	1	ENSMUSG00000037440	missense	Y/H	97	Vnn1	ENSMUST00000041416.7:c.289T>C	ENSMUSP00000040599.7:p.Tyr97His	H-2-Kb	9	7	5	TIYPHLEEI	TIYPYLEEI	NetMHCpan	162.8	59.8	0.367	94	0.266	280.695	187.481	0.668	155.05	490.72	59.8	162.8	228.6177783	285.1740477	219.9125427	276.216743	M3_p20	-0.685714286	-0.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.285	94	0	0	NA	10qA4	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr1	185323752	185323752	A	G	ENSMUST00000027921.10	1	ENSMUSG00000026618	missense	M/T	205	Iars2	ENSMUST00000027921.10:c.614T>C	ENSMUSP00000027921.4:p.Met205Thr	H-2-Kb	9	3	9	SAFVRWGVT	SAFVRWGVM	SMMPMBEC	196.449	52.997	0.27	194	0.149	432.451	57.053	0.132	65.61	668.72	51.3	596.3	61.10967866	268.6024688	52.99684305	196.4490803	M3_p20	0.671428571	1.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.144	194	0	0	NA	1qH5	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	1	0.6376415	sgMsh2	cell line
chr1	175153188	175153188	T	C	ENSMUST00000195324.5	5	ENSMUSG00000026527	missense	Y/C	90	Rgs7	ENSMUST00000195324.5:c.269A>G	ENSMUSP00000141380.1:p.Tyr90Cys	H-2-Kb	9	7	5	AAHGCFFPI	AAHGYFFPI	NetMHCpan	475.8	43.5	0.091	259	0.32	498.69	151.709	0.304	152.67	731.8	43.5	475.8	152.7953016	511.811453	150.7474589	485.5679351	M3_p20	1.057142857	1.157142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.322	259	0	0	NA	1qH3	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr11	61449691	61449691	A	G	ENSMUST00000054927.13	1	ENSMUSG00000010086	missense	S/P	561	Rnf112	ENSMUST00000054927.13:c.1681T>C	ENSMUSP00000056464.7:p.Ser561Pro	H-2-Db	9	6	6	KAFMDPYTM	KAFMDSYTM	NetMHC	143.52	155.09	1.081	53	0.358	339.983	369.651	1.087	155.09	143.52	128.2	144.7	617.4758832	539.0387667	584.2113633	535.2664216	M3_p20	-0.071428571	-0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.324	53	0	0	NA	11qB2	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr11	78034527	78034527	C	T	ENSMUST00000021187.11	1	ENSMUSG00000020834	missense	A/V	208	Dhrs13	ENSMUST00000021187.11:c.623C>T	ENSMUSP00000021187.5:p.Ala208Val	H-2-Db	9	3	9	SKLANVLFV	SKLANVLFA	NetMHC	180.08	1480.25	8.22	54	0.074	384.819	1310.999	3.407	1480.25	180.08	3448.6	356	928.1539131	413.6375908	1141.747318	492.6857485	M3_p20	2.442857143	2.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.081	54	0	0	NA	11qB5	chr11-69590981-82929860	4	4	0	0.91	4.029540036	NA	1	0.358673344	sgMsh2	cell line
chr11	43835686	43835686	T	C	ENSMUST00000067258.8	1	ENSMUSG00000050541	missense	S/G	135	Adra1b	ENSMUST00000067258.8:c.403A>G	ENSMUSP00000070200.2:p.Ser135Gly	H-2-Db	9	7	5	ASILGLCAI	ASILSLCAI	SMMPMBEC	393.161	265.809	0.676	118	0.195	445.671	273.24	0.613	280.67	577.5	248.5	460.2	294.86281	431.1416704	265.8091949	393.1606098	M3_p20	2.928571429	2.928571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.184	118	0	0	NA	11qB1.1	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	0.814764139	sgMsh2	cell line
chr11	34688463	34688463	A	T	ENSMUST00000093193.11	1	ENSMUSG00000020143	missense	L/M	708	Dock2	ENSMUST00000093193.11:c.2122T>A	ENSMUSP00000090884.5:p.Leu708Met	H-2-Kb	8	9	3	ATMAYKKL	ATLAYKKL	NetMHCpan	62.7	80.7	1.287	415	0.255	117.441	94.582	0.805	84.03	96.29	80.7	62.7	118.7790917	204.0515979	105.1332282	138.5925865	M3_p20	-0.328571429	-0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.254	415	0	0	NA	11qA4	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr11	72058021	72058021	G	A	ENSMUST00000075258.12	1	ENSMUSG00000040543	missense	R/W	769	Pitpnm3	ENSMUST00000075258.12:c.2305C>T	ENSMUSP00000074737.6:p.Arg769Trp	H-2-Kb	8	9	3	VVWHWQDL	VVRHWQDL	NetMHCpan	164	1200.7	7.321	148	0.189	222.002	907.754	4.089	1202.31	270.69	1200.7	164	614.8086937	260.4593785	592.570463	183.5439188	M3_p20	-0.571428571	-0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.213	148	0	0	NA	11qB4	chr11-69590981-82929860	4	4	0	0.91	4.029540036	NA	1	0.943178052	sgMsh2	cell line
chr11	69478799	69478799	T	G	ENSMUST00000108659.1	5	ENSMUSG00000005237	missense	E/A	1617	Dnah2	ENSMUST00000108659.1:c.4850A>C	ENSMUSP00000104299.1:p.Glu1617Ala	H-2-Kb	8	6	6	SSSKWAAV	SSSKWEAV	NetMHC	389.22	5810.43	14.928	172	0.215	411.521	4252.471	10.334	5810.43	389.22	5555.5	961.1	2949.442949	422.4156501	2908.975074	400.6268017	M3_p20	0.2	0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.245	172	0	0	NA	11qB3	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr11	49341357	49341357	CT	C	ENSMUST00000215014.1	5	ENSMUSG00000045421	FS	L/X	275	Olfr1390	ENSMUST00000215014.1:c.829del	ENSMUSP00000151059.1:p.Tyr277IlefsTer11	H-2-Kb	8	8	6	FVALFILL	FVALFYII	SMM	181.443	1785.418	9.84	277	0.256	354.925	2147.623	6.051	3065.65	490.7	1973.9	713.2	1785.418375	181.4429089	2321.346655	219.1492557	M3_p20	3.528571429	3.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.241	277	0	0	NA	11qB1.2	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr10	129437268	129437268	T	C	ENSMUST00000204529.2	3	ENSMUSG00000095696	missense	L/P	152	Olfr786	ENSMUST00000204529.2:c.455T>C	ENSMUSP00000145099.1:p.Leu152Pro	H-2-Kb	8	10	2	FPIIFPAL	FLIIFPAL	SMM	114.747	118.506	1.033	275	0.316	378.842	170.833	0.451	219.84	610.54	261.3	732.8	118.5059074	114.746646	121.8260042	147.1431334	M3_p20	2.028571429	2.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.304	275	0	0	NA	10qD3	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr10	130472110	130472110	CA	C	ENSMUST00000164227.3	5	ENSMUSG00000091511	FS	L/X	753	Vmn2r87	ENSMUST00000164227.3:c.2258del	ENSMUSP00000129215.2:p.Leu753TrpfsTer25	H-2-Kb	8	15	0	ASLWLSWL	NA	SMM	312.421	NA	NA	338	0.311	407.641	NA	NA	NA	717.62	NA	457.4	NA	312.4208431	NA	357.8821189	M3_p20	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.309	338	0	0	NA	10qD3	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	sgMsh2	cell line
chr10	130472110	130472110	CA	C	ENSMUST00000164227.3	5	ENSMUSG00000091511	FS	L/X	753	Vmn2r87	ENSMUST00000164227.3:c.2258del	ENSMUSP00000129215.2:p.Leu753TrpfsTer25	H-2-Kb	8	19	0	LSWLGTFL	NA	SMMPMBEC	307.426	NA	NA	338	0.311	420.694	NA	NA	NA	1101.66	NA	318.1	NA	523.2870654	NA	307.4255792	M3_p20	1.085714286	1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.309	338	0	0	NA	10qD3	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	sgMsh2	cell line
chr11	34688463	34688463	A	T	ENSMUST00000093193.11	1	ENSMUSG00000020143	missense	L/M	708	Dock2	ENSMUST00000093193.11:c.2122T>A	ENSMUSP00000090884.5:p.Leu708Met	H-2-Kb	9	11	1	MAYKKLMTV	LAYKKLMTV	NetMHCpan	53.3	93.4	1.752	415	0.255	111.459	136.253	1.222	92.9	63.29	93.4	53.3	179.1059444	159.628341	191.9773533	191.9773533	M3_p20	0.014285714	0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.254	415	0	0	NA	11qA4	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr10	129754686	129754686	T	A	ENSMUST00000213379.1	5	ENSMUSG00000050478	missense	M/L	255	Olfr807	ENSMUST00000213379.1:c.763A>T	ENSMUSP00000149172.1:p.Met255Leu	H-2-Kb	9	3	9	ISYGSCIFL	ISYGSCIFM	NetMHC	67.13	154.95	2.308	193	0.332	106.451	174.575	1.64	154.95	67.13	136.5	69.6	202.3531643	153.854428	194.2003463	143.301257	M3_p20	1.585714286	1.585714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.326	193	0	0	NA	10qD3	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	sgMsh2	cell line
chr11	78034527	78034527	C	T	ENSMUST00000021187.11	1	ENSMUSG00000020834	missense	A/V	208	Dhrs13	ENSMUST00000021187.11:c.623C>T	ENSMUSP00000021187.5:p.Ala208Val	H-2-Kb	9	6	6	ANVLFVREL	ANVLFAREL	NetMHCpan	54.5	61.4	1.127	54	0.074	259.081	280.711	1.083	89.24	79.52	61.4	54.5	472.1826226	438.6417848	678.0317017	525.1096507	M3_p20	1.542857143	1.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.081	54	0	0	NA	11qB5	chr11-69590981-82929860	4	4	0	0.91	4.029540036	NA	1	0.358673344	sgMsh2	cell line
chr11	34688463	34688463	A	T	ENSMUST00000093193.11	1	ENSMUSG00000020143	missense	L/M	708	Dock2	ENSMUST00000093193.11:c.2122T>A	ENSMUSP00000090884.5:p.Leu708Met	H-2-Kb	9	3	9	IQQHFSATM	IQQHFSATL	NetMHC	108.3	43.99	0.406	415	0.255	432.806	302.966	0.7	43.99	108.3	87	183.1	518.9314595	682.5115418	629.8686601	853.5913393	M3_p20	-0.242857143	-0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.254	415	0	0	NA	11qA4	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr11	67211360	67211360	C	A	ENSMUST00000124516.7	1	ENSMUSG00000056328	missense	R/S	826	Myh1	ENSMUST00000124516.7:c.2476C>A	ENSMUSP00000117569.1:p.Arg826Ser	H-2-Kb	9	6	6	IQYNVSAFM	IQYNVRAFM	NetMHC	125.35	144.71	1.154	349	0.181	385.659	420.869	1.091	144.71	125.35	131.9	140.2	830.0609824	631.1171763	697.02764	656.5230826	M3_p20	0.728571429	0.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.184	349	0	0	NA	11qB3	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	0.814764139	sgMsh2	cell line
chr11	61546578	61546578	A	C	ENSMUST00000179936.7	1	ENSMUSG00000001036	missense	I/S	56	Epn2	ENSMUST00000179936.7:c.167T>G	ENSMUSP00000136950.1:p.Ile56Ser	H-2-Kb	9	6	6	VAFSESMSM	VAFSEIMSM	NetMHCpan	123.9	82.3	0.664	128	0.219	145.532	154.465	1.061	140.62	155.51	82.3	123.9	168.310031	135.5532704	254.8296748	263.7849417	M3_p20	0.1	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.241	128	0	0	NA	11qB2	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr10	129437268	129437268	T	C	ENSMUST00000204529.2	3	ENSMUSG00000095696	missense	L/P	152	Olfr786	ENSMUST00000204529.2:c.455T>C	ENSMUSP00000145099.1:p.Leu152Pro	H-2-Kb	9	9	3	SFPIIFPAL	SFLIIFPAL	NetMHCpan	184.1	208.8	1.134	275	0.316	392.051	277.016	0.707	198.11	192.39	208.8	184.1	345.2311699	591.7114865	364.9639766	689.0488306	M3_p20	2.028571429	2.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.304	275	0	0	NA	10qD3	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr11	66145269	66145269	A	T	ENSMUST00000080665.9	5	ENSMUSG00000056752	missense	D/E	438	Dnah9	ENSMUST00000080665.9:c.1314T>A	ENSMUSP00000079494.3:p.Asp438Glu	H-2-Kb	9	5	7	LVFVRLEGF	LVFVRLDGF	SMM	175.837	200.498	1.14	114	0.175	217.209	246.217	1.134	266.36	239.77	675.3	414.5	200.4979793	175.8368925	226.073678	194.6480243	M3_p20	0.742857143	1.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe	3	0.179	114	0	0	NA	11qB3	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	0.792623809	sgMsh2	cell line
chr11	67243457	67243457	T	G	ENSMUST00000018632.10	5	ENSMUSG00000057003	missense	F/V	313	Myh4	ENSMUST00000018632.10:c.937T>G	ENSMUSP00000018632.4:p.Phe313Val	H-2-Kb	9	11	1	VAYVSQGEI	FAYVSQGEI	SMM	235.565	696.803	2.958	680	0.265	269.225	768.373	2.854	913.58	300.05	675.5	255.8	696.8029811	235.5645857	839.9433576	282.6506575	M3_p20	-0.114285714	0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.263	680	0	0	NA	11qB3	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr10	130472110	130472110	CA	C	ENSMUST00000164227.3	5	ENSMUSG00000091511	FS	L/X	753	Vmn2r87	ENSMUST00000164227.3:c.2258del	ENSMUSP00000129215.2:p.Leu753TrpfsTer25	H-2-Kb	9	9	3	GSWLWGASL	NA	NetMHCpan	270.2	NA	NA	338	0.311	374.862	NA	NA	NA	300.72	NA	270.2	NA	563.7804345	NA	449.0037829	M3_p20	0.914285714	0.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.309	338	0	0	NA	10qD3	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	sgMsh2	cell line
chr10	129437268	129437268	T	C	ENSMUST00000204529.2	3	ENSMUSG00000095696	missense	L/P	152	Olfr786	ENSMUST00000204529.2:c.455T>C	ENSMUSP00000145099.1:p.Leu152Pro	H-2-Kb	9	5	7	SWLVSFPII	SWLVSFLII	SMM	268.602	322.931	1.202	275	0.316	495.553	719.896	1.453	850.61	484.99	1080	514.6	322.9311952	268.6024688	589.1827186	506.1159219	M3_p20	2.485714286	2.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.304	275	0	0	NA	10qD3	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr11	7139118	7139118	A	G	ENSMUST00000020706.4	2	ENSMUSG00000020431	missense	M/V	511	Adcy1	ENSMUST00000020706.4:c.1531A>G	ENSMUSP00000020706.4:p.Met511Val	H-2-Kb	9	3	9	VCYLLVQLV	VCYLLVQLM	SMMPMBEC	317.139	191.977	0.605	151	0.258	444.8	282.549	0.635	336.48	498.66	451.7	1247.2	228.6177783	390.9399022	191.9773533	317.1392538	M3_p20	2.142857143	2.142857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.255	151	0	0	NA	11qA1	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr10	130472110	130472110	CA	C	ENSMUST00000164227.3	5	ENSMUSG00000091511	FS	L/X	753	Vmn2r87	ENSMUST00000164227.3:c.2258del	ENSMUSP00000129215.2:p.Leu753TrpfsTer25	H-2-Kb	9	17	0	LWLSWLGTF	NA	SMM	245.533	NA	NA	338	0.311	456.634	NA	NA	NA	499.03	NA	2307.2	NA	245.5330734	NA	414.2380608	M3_p20	1.085714286	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.309	338	0	0	NA	10qD3	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	sgMsh2	cell line
chr11	66145267	66145267	C	T	ENSMUST00000080665.9	5	ENSMUSG00000056752	missense	G/D	439	Dnah9	ENSMUST00000080665.9:c.1316G>A	ENSMUSP00000079494.3:p.Gly439Asp	H-2-Kb	9	4	8	LVFVRLDDF	LVFVRLDGF	SMMPMBEC	346.937	226.074	0.652	114	0.175	476.883	246.217	0.516	266.36	547.22	675.3	1626.6	200.4979793	406.5462879	226.073678	346.9365057	M3_p20	0.3	1.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe	3	0.179	114	0	0	NA	11qB3	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	0.792623809	sgMsh2	cell line
chr11	98488928	98488928	GT	G	ENSMUST00000103141.3	5	ENSMUSG00000018168	FS	K/X	171	Ikzf3	ENSMUST00000103141.3:c.513del	ENSMUSP00000099430.3:p.Lys171AsnfsTer88	H-2-Db	9	57	0	RSTRNAAEL	NA	NetMHC	122.01	NA	NA	138	0.304	138.556	NA	NA	NA	122.01	NA	192	NA	131.7103792	NA	145.4018727	M3_p20	-0.685714286	-0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.299	138	0	0	NA	11qD	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr12	55490467	55490467	A	G	ENSMUST00000021413.8	1	ENSMUSG00000021025	missense	M/T	279	Nfkbia	ENSMUST00000021413.8:c.836T>C	ENSMUSP00000021413.7:p.Met279Thr	H-2-Db	9	4	8	LTLENLQTL	LTLENLQML	NetMHCpan	91.9	614.9	6.691	107	0.121	148.476	602.259	4.056	939.09	126.1	614.9	91.9	555.4180636	170.8519736	589.6170044	179.295752	M3_p20	0.028571429	0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.125	107	0	0	NA	12qC1	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	0.553508247	sgMsh2	cell line
chr11	98250323	98250323	GA	G	ENSMUST00000107538.1	1	ENSMUSG00000003119	FS	G/X	1463	Cdk12	ENSMUST00000107538.1:c.4392del	ENSMUSP00000103162.1:p.Lys1464AsnfsTer40	H-2-Db	9	38	0	NALKDSFPI	NA	NetMHC	176.49	NA	NA	50	0.26	314.485	NA	NA	NA	176.49	NA	291.2	NA	337.7691648	NA	345.5970287	M3_p20	0.185714286	0.185714286	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;Vardict	3	0.265	50	0	0	NA	11qD	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr12	4974217	4974217	T	C	ENSMUST00000045664.6	5	ENSMUSG00000052812	missense	I/T	689	Atad2b	ENSMUST00000045664.6:c.2066T>C	ENSMUSP00000047445.5:p.Ile689Thr	H-2-Db	9	6	6	RSFNNTLAV	RSFNNILAV	NetMHCpan	115.4	84.3	0.731	160	0.094	200.079	185.23	0.926	216.04	227.83	84.3	115.4	189.5047063	189.5047063	180.9547551	210.6541406	M3_p20	0.7	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.09	160	0	0	NA	12qA1.1	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	0.398525938	sgMsh2	cell line
chr11	97181660	97181660	T	C	ENSMUST00000001479.4	1	ENSMUSG00000001440	missense	T/A	150	Kpnb1	ENSMUST00000001479.4:c.448A>G	ENSMUSP00000001479.3:p.Thr150Ala	H-2-Db	9	10	2	SALEAIGYI	STLEAIGYI	NetMHCpan	418.4	2939.3	7.025	404	0.252	447.643	3137.803	7.01	4778.06	436.49	2939.3	418.4	2982.771604	458.7963984	3292.835233	576.1956828	M3_p20	1.342857143	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.251	404	0	0	NA	11qD	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr11	94465827	94465827	A	T	ENSMUST00000100561.9	1	ENSMUSG00000020866	missense	I/N	161	Cacna1g	ENSMUST00000100561.9:c.482T>A	ENSMUSP00000098127.3:p.Ile161Asn	H-2-Db	9	7	5	FFIVNAGML	FFIVIAGML	SMM	159.448	7544.318	47.315	56	0.25	338.685	16773.919	49.527	27545.88	456.28	22744.2	1425.2	7544.318243	159.4483392	10803.63741	221.0904583	M3_p20	1.757142857	1.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.291	56	0	0	NA	11qD	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr11	116607343	116607343	T	C	ENSMUST00000103028.7	1	ENSMUSG00000020806	missense	N/S	10	Rhbdf2	ENSMUST00000103028.7:c.29A>G	ENSMUSP00000099317.1:p.Asn10Ser	H-2-Db	9	3	8	SADKNGSSL	SADKNGSNL	NetMHCpan	264.2	514.2	1.946	35	0.286	491.14	788.8	1.606	1790.39	859.51	514.2	264.2	838.7257951	517.1541332	738.8733457	465.1253395	M3_p20	-1.3	-1.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.28	35	0	0	NA	11qE2	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr12	73108786	73108786	G	A	ENSMUST00000043208.7	1	ENSMUSG00000034460	missense	P/L	469	Six4	ENSMUST00000043208.7:c.1406C>T	ENSMUSP00000036150.6:p.Pro469Leu	H-2-Kb	8	4	8	SVVTFTTL	SVVTFTTP	NetMHCpan	12.7	5794.2	456.236	143	0.098	37.441	3696.4	98.725	11329	13.26	5794.2	12.7	1583.944645	65.42443789	1598.600704	61.62259741	M3_p20	1.842857143	1.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.107	143	0	0	NA	12qC3	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	0.473803059	sgMsh2	cell line
chr11	87433817	87433817	CG	C	ENSMUST00000060835.11	5	ENSMUSG00000010342	FS	R/X	3	Tex14	ENSMUST00000060835.11:c.13del	ENSMUSP00000054444.5:p.Ala5LeufsTer33	H-2-Kb	8	3	3	RGLLFQSL	NA	NetMHC	20.57	NA	NA	67	0.149	61.471	NA	NA	NA	20.57	NA	53.8	NA	69.1416915	NA	77.39982879	M3_p20	1.357142857	1.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.156	67	0	0	NA	11qC	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	1	0.690778292	sgMsh2	cell line
chr12	76564382	76564382	T	C	ENSMUST00000075249.5	1	ENSMUSG00000052609	missense	V/A	231	Plekhg3	ENSMUST00000075249.5:c.692T>C	ENSMUSP00000074729.4:p.Val231Ala	H-2-Kb	8	10	2	RALKYHLL	RVLKYHLL	NetMHCpan	46.6	48	1.03	54	0.259	81.358	92.716	1.14	72.52	51.61	48	46.6	112.911974	111.1066364	114.482736	123.8055176	M3_p20	0.685714286	0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.282	54	0	0	NA	12qC3	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr12	31490488	31490488	CT	C	ENSMUST00000101499.9	1	ENSMUSG00000020659	FS	K/X	140	Cbll1	ENSMUST00000101499.9:c.420del	ENSMUSP00000099038.3:p.Gly141GlufsTer51	H-2-Kb	8	19	0	VVILCSGL	NA	NetMHC	67.21	NA	NA	343	0.277	94.115	NA	NA	NA	67.21	NA	80.4	NA	130.2386842	NA	107.830098	M3_p20	2.514285714	2.571428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.26	343	0	0	NA	12qA2	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr11	115250142	115250142	CG	C	ENSMUST00000106554.1	5	ENSMUSG00000020734	FS	P/X	1050	Grin2c	ENSMUST00000106554.1:c.3149del	ENSMUSP00000102164.1:p.Pro1050ArgfsTer151	H-2-Kb	8	66	0	VTPALAHV	NA	NetMHC	83.26	NA	NA	8	0.625	197.593	NA	NA	NA	83.26	NA	522.2	NA	181.0256018	NA	214.1608096	M3_p20	0.871428571	0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.625	8	0	0	NA	11qE2	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr11	115822071	115822071	GA	G	ENSMUST00000021134.9	1	ENSMUSG00000020781	FS	R/X	461	Tsen54	ENSMUST00000021134.9:c.1388del	ENSMUSP00000021134.3:p.Asn463ThrfsTer28	H-2-Kb	8	8	6	ATFRKTAL	ATFRKNSP	NetMHCpan	107.7	12589.3	116.892	89	0.292	143.935	9990.463	69.41	19710.55	129.11	12589.3	107.7	7391.626265	173.6760767	7290.209351	158.7596015	M3_p20	-0.2	-0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.303	89	0	0	NA	11qE2	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr11	119440808	119440808	A	G	ENSMUST00000093902.11	5	ENSMUSG00000070327	missense	H/R	2282	Rnf213	ENSMUST00000093902.11:c.6845A>G	ENSMUSP00000091429.5:p.His2282Arg	H-2-Kb	8	5	7	MTFIGFRL	MTFIGFHL	NetMHCpan	34.6	36.6	1.058	312	0.228	68.355	87.554	1.281	140.39	135.54	36.6	34.6	96.99291239	74.94454029	78.11600059	61.76465217	M3_p20	1.185714286	1.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.224	312	0	0	NA	11qE2	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	1	0.991886778	sgMsh2	cell line
chr11	98152821	98152821	AC	A	ENSMUST00000092735.11	1	ENSMUSG00000018160	FS	V/X	595	Med1	ENSMUST00000092735.11:c.1783del	ENSMUSP00000090411.5:p.Val595PhefsTer7	H-2-Kb	8	9	3	FMFFFSFF	FMVFFFFF	SMMPMBEC	119.053	1020.328	8.57	30	0.467	135.28	1271.189	9.397	1321.31	138.51	4097.2	147.2	1221.068422	132.0504848	1020.328459	119.0529058	M3_p20	2.157142857	2.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.471	30	0	0	NA	11qD	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr11	96581344	96581344	A	C	ENSMUST00000107662.8	1	ENSMUSG00000057058	missense	T/P	148	Skap1	ENSMUST00000107662.8:c.442A>C	ENSMUSP00000103289.2:p.Thr148Pro	H-2-Kb	8	7	5	SRYSPAHL	SRYSTAHL	SMM	174.88	169.723	0.971	351	0.234	210.344	161.194	0.766	151.88	220.36	782.2	1165.3	169.7227266	174.8799418	152.6651821	200.3272365	M3_p20	-0.828571429	-0.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	351	0	0	NA	11qD	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr11	96581344	96581344	A	C	ENSMUST00000107662.8	1	ENSMUSG00000057058	missense	T/P	148	Skap1	ENSMUST00000107662.8:c.442A>C	ENSMUSP00000103289.2:p.Thr148Pro	H-2-Kb	8	9	3	YSPAHLAL	YSTAHLAL	SMM	236.45	371.313	1.57	351	0.234	284.425	775.994	2.728	1039.72	259.55	1012.8	309.3	371.3128679	236.4503711	539.1877292	350.5419514	M3_p20	0.8	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	351	0	0	NA	11qD	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr11	96581344	96581344	A	C	ENSMUST00000107662.8	1	ENSMUSG00000057058	missense	T/P	148	Skap1	ENSMUST00000107662.8:c.442A>C	ENSMUSP00000103289.2:p.Thr148Pro	H-2-Kb	8	5	7	SSSRYSPA	SSSRYSTA	NetMHC	265.14	1280.31	4.829	351	0.234	396.626	1171.908	2.955	1280.31	265.14	1961.3	1087.9	1063.506136	425.3436955	963.2521787	367.908651	M3_p20	-1.142857143	-1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	351	0	0	NA	11qD	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr11	98488928	98488928	GT	G	ENSMUST00000103141.3	5	ENSMUSG00000018168	FS	K/X	171	Ikzf3	ENSMUST00000103141.3:c.513del	ENSMUSP00000099430.3:p.Lys171AsnfsTer88	H-2-Kb	8	68	0	RTLTWGTL	NA	SMMPMBEC	208.324	NA	NA	138	0.304	253.828	NA	NA	NA	456.15	NA	261.2	NA	246.456343	NA	208.324333	M3_p20	0.6	0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.299	138	0	0	NA	11qD	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr11	116023510	116023510	C	A	ENSMUST00000106454.7	5	ENSMUSG00000016559	missense	G/V	103	H3f3b	ENSMUST00000106454.7:c.308G>T	ENSMUSP00000102062.1:p.Gly103Val	H-2-Kb	8	11	1	VLFEDTNL	GLFEDTNL	SMMPMBEC	139.553	1457.941	10.447	191	0.183	257.434	4738.713	18.408	11220.79	524.1	7134.6	368.4	2342.825811	146.4670721	1457.94117	139.5532644	M3_p20	-0.114285714	-0.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.202	191	0	0	NA	11qE2	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	1	0.894469327	sgMsh2	cell line
chr12	54685943	54685943	TG	T	ENSMUST00000161592.7	1	ENSMUSG00000054302	FS	H/X	127	Eapp	ENSMUST00000161592.7:c.381del	ENSMUSP00000123698.1:p.His127GlnfsTer52	H-2-Kb	8	53	0	SLFQTVML	NA	SMMPMBEC	306.719	NA	NA	96	0.271	372.068	NA	NA	NA	617.01	NA	379.6	NA	364.5356443	NA	306.71852	M3_p20	1.757142857	1.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.277	96	0	0	NA	12qC1	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr11	117772845	117772845	T	C	ENSMUST00000026659.9	1	ENSMUSG00000025572	missense	I/V	514	Tmc6	ENSMUST00000026659.9:c.1540A>G	ENSMUSP00000026659.3:p.Ile514Val	H-2-Kb	8	10	2	LVLKMAVL	LILKMAVL	SMMPMBEC	395.13	281.67	0.713	86	0.244	457.257	401.56	0.878	565.93	825.08	490.7	423.9	312.4208431	490.6140712	281.6696149	395.1299959	M3_p20	2.257142857	2.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.255	86	0	0	NA	11qE2	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr11	94334532	94334532	A	G	ENSMUST00000107818.8	5	ENSMUSG00000020864	missense	T/A	130	Ankrd40	ENSMUST00000107818.8:c.388A>G	ENSMUSP00000103448.2:p.Thr130Ala	H-2-Kb	8	6	6	FPFIYAPA	FPFIYTPA	SMMPMBEC	111.363	324.893	2.917	77	0.117	485.551	890.63	1.834	2975.36	844.12	1418.4	870.2	362.8607551	126.9813676	324.8927349	111.3627636	M3_p20	0.914285714	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.137	77	0	0	NA	11qD	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	1	0.606645038	sgMsh2	cell line
chr12	72477207	72477207	A	G	ENSMUST00000162159.7	1	ENSMUSG00000021090	missense	N/S	729	Lrrc9	ENSMUST00000162159.7:c.2186A>G	ENSMUSP00000124394.1:p.Asn729Ser	H-2-Kb	8	5	7	DVYHLYSL	DVYHLYNL	NetMHCpan	351.6	232.6	0.662	258	0.26	440.275	217.158	0.493	455.13	926.68	232.6	351.6	170.8991883	419.5077612	201.7158386	461.0414792	M3_p20	0.742857143	0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.262	258	0	0	NA	12qC3	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr12	72304133	72304133	A	T	ENSMUST00000078505.13	1	ENSMUSG00000021087	missense	F/Y	434	Rtn1	ENSMUST00000078505.13:c.1301T>A	ENSMUSP00000077594.7:p.Phe434Tyr	H-2-Kb	9	6	6	SGYVSYGHV	SGYVSFGHV	NetMHC	9.91	11.65	1.176	61	0.23	79.315	105.209	1.326	11.65	9.91	20.7	23.7	189.7186388	134.9304597	209.0499173	147.6556263	M3_p20	0.2	0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	61	0	0	NA	12qC3	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr12	51774736	51774736	A	C	ENSMUST00000042052.8	5	ENSMUSG00000035247	missense	L/V	1057	Hectd1	ENSMUST00000042052.8:c.3169T>G	ENSMUSP00000046766.8:p.Leu1057Val	H-2-Kb	9	3	9	SSFVFVRKV	SSFVFVRKL	NetMHC	11.42	5.76	0.504	131	0.26	102.897	45.252	0.44	5.76	11.42	5.5	15.2	84.74420308	190.5943402	91.88613834	205.7074402	M3_p20	1.4	1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.282	131	0	0	NA	12qB3	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr12	76564382	76564382	T	C	ENSMUST00000075249.5	1	ENSMUSG00000052609	missense	V/A	231	Plekhg3	ENSMUST00000075249.5:c.692T>C	ENSMUSP00000074729.4:p.Val231Ala	H-2-Kb	9	10	2	RALKYHLLL	RVLKYHLLL	NetMHCpan	57.7	70.7	1.225	54	0.259	181.236	223.936	1.236	125.58	83.7	70.7	57.7	322.9311952	287.1507798	322.2923521	278.7725451	M3_p20	0.971428571	0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.282	54	0	0	NA	12qC3	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr11	98488928	98488928	GT	G	ENSMUST00000103141.3	5	ENSMUSG00000018168	FS	K/X	171	Ikzf3	ENSMUST00000103141.3:c.513del	ENSMUSP00000099430.3:p.Lys171AsnfsTer88	H-2-Kb	9	62	0	AAELFFRTL	NA	NetMHC	89.08	NA	NA	138	0.304	200.048	NA	NA	NA	89.08	NA	91.6	NA	330.4532291	NA	308.4963287	M3_p20	0.642857143	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.299	138	0	0	NA	11qD	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr11	96581344	96581344	A	C	ENSMUST00000107662.8	1	ENSMUSG00000057058	missense	T/P	148	Skap1	ENSMUST00000107662.8:c.442A>C	ENSMUSP00000103289.2:p.Thr148Pro	H-2-Kb	9	9	3	YSPAHLALM	YSTAHLALM	NetMHC	132.73	417.47	3.145	351	0.234	249.158	480.61	1.929	417.47	132.73	534.5	167.1	455.1033161	331.2150024	506.1159219	397.4202571	M3_p20	1.185714286	1.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	351	0	0	NA	11qD	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr12	73108786	73108786	G	A	ENSMUST00000043208.7	1	ENSMUSG00000034460	missense	P/L	469	Six4	ENSMUST00000043208.7:c.1406C>T	ENSMUSP00000036150.6:p.Pro469Leu	H-2-Kb	9	4	8	SVVTFTTLV	SVVTFTTPV	NetMHC	133.43	58.98	0.442	143	0.098	332.202	220.794	0.665	58.98	133.43	75.9	198.7	365.6874028	465.7040341	414.2380608	577.0985724	M3_p20	1.842857143	1.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.107	143	0	0	NA	12qC3	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	0.473803059	sgMsh2	cell line
chr12	73108786	73108786	G	A	ENSMUST00000043208.7	1	ENSMUSG00000034460	missense	P/L	469	Six4	ENSMUST00000043208.7:c.1406C>T	ENSMUSP00000036150.6:p.Pro469Leu	H-2-Kb	9	6	6	VTFTTLVQI	VTFTTPVQI	NetMHC	182.12	518.16	2.845	143	0.098	240.023	659.413	2.747	518.16	182.12	770.1	233.3	729.6422938	309.8203926	589.1827186	246.7459312	M3_p20	1.485714286	1.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.107	143	0	0	NA	12qC3	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	0.473803059	sgMsh2	cell line
chr11	87035223	87035223	T	C	ENSMUST00000020804.7	1	ENSMUSG00000061666	missense	T/A	299	Gdpd1	ENSMUST00000020804.7:c.895A>G	ENSMUSP00000020804.7:p.Thr299Ala	H-2-Kb	9	9	3	VMADYPTKL	VMTDYPTKL	NetMHCpan	134	233	1.739	76	0.25	178.725	248.628	1.391	288.51	222.06	233	134	258.8868552	177.8729877	238.3691237	179.5767056	M3_p20	-0.771428571	0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	76	0	0	NA	11qC	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr12	51999859	51999859	T	G	ENSMUST00000021339.7	1	ENSMUSG00000020956	missense	N/H	66	Dtd2	ENSMUST00000021339.7:c.196A>C	ENSMUSP00000021339.7:p.Asn66His	H-2-Kb	9	6	6	VNTLLHVKL	VNTLLNVKL	NetMHCpan	212.6	1257.5	5.915	54	0.444	402.088	1117.492	2.779	1647.25	460.42	1257.5	212.6	977.4847712	462.4981501	708.3534281	343.7557727	M3_p20	1.114285714	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.432	54	0	0	NA	12qC1	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr11	115822071	115822071	GA	G	ENSMUST00000021134.9	1	ENSMUSG00000020781	FS	R/X	461	Tsen54	ENSMUST00000021134.9:c.1388del	ENSMUSP00000021134.3:p.Asn463ThrfsTer28	H-2-Kb	9	7	7	VATFRKTAL	VATFRKNSP	SMMPMBEC	250.179	1950.967	7.798	89	0.292	378.231	10698.049	28.284	19445.13	487.24	24150.8	959.7	1180.61963	269.2216614	1950.967344	250.1785091	M3_p20	-0.2	-0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.303	89	0	0	NA	11qE2	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr11	98152821	98152821	AC	A	ENSMUST00000092735.11	1	ENSMUSG00000018160	FS	V/X	595	Med1	ENSMUST00000092735.11:c.1783del	ENSMUSP00000090411.5:p.Val595PhefsTer7	H-2-Kb	9	7	5	LEFMFFFSF	LEFMVFFFF	SMM	152.093	1559.948	10.257	30	0.467	326.93	3466.529	10.603	5373.11	500.31	11273.5	2074.9	1559.947563	152.0932709	1337.365144	153.5500634	M3_p20	2.157142857	2.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.471	30	0	0	NA	11qD	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr11	102886351	102886351	A	G	ENSMUST00000100369.3	NA	ENSMUSG00000075510	missense	H/R	327	Fam187a	ENSMUST00000100369.3:c.980A>G	ENSMUSP00000097938.3:p.His327Arg	H-2-Kb	9	7	5	VFIDRGNHL	VFIDHGNHL	SMMPMBEC	265.003	291.239	1.099	120	0.167	419.914	404.055	0.962	516.87	568.74	648.9	885.7	280.61443	271.0878168	291.2393144	265.0025177	M3_p20	-0.971428571	-0.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.163	120	0	0	NA	11qE1	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	1	0.721774754	sgMsh2	cell line
chr13	75878849	75878849	T	G	ENSMUST00000022078.11	1	ENSMUSG00000021589	missense	K/N	468	Rhobtb3	ENSMUST00000022078.11:c.1404A>C	ENSMUSP00000022078.5:p.Lys468Asn	H-2-Db	9	7	5	YGVSNETFL	YGVSKETFL	NetMHC	4.07	552.12	135.656	237	0.308	38.329	1708.94	44.587	552.12	4.07	1286.7	11.1	2131.179353	65.55714019	2236.505652	66.61468828	M3_p20	0.328571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.307	237	0	0	NA	13qC1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr13	52611067	52611067	CG	C	ENSMUST00000120135.7	1	ENSMUSG00000021457	FS	G/X	77	Syk	ENSMUST00000120135.7:c.233del	ENSMUSP00000113852.1:p.Gly78AlafsTer45	H-2-Db	9	7	6	YAISGAGPM	YAISGGRAH	NetMHC	17.97	37520.91	2087.975	53	0.264	118.625	19737.582	166.386	37520.91	17.97	29181.5	78.9	9324.380769	158.3507045	10293.66428	163.1435844	M3_p20	0.714285714	0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.308	53	0	0	NA	13qA5	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr13	64794243	64794243	T	C	ENSMUST00000091554.5	5	ENSMUSG00000033063	missense	I/M	224	Cntnap3	ENSMUST00000091554.5:c.672A>G	ENSMUSP00000089140.4:p.Ile224Met	H-2-Db	9	3	9	KAMQNSGIM	KAMQNSGII	NetMHC	26.19	22.66	0.865	173	0.306	85.851	80.049	0.932	22.66	26.19	28.1	26.3	158.3507045	155.1029293	131.9988052	145.4018727	M3_p20	0.014285714	0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.318	173	0	0	NA	13qB3	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr13	44923269	44923269	T	C	ENSMUST00000072329.14	1	ENSMUSG00000057531	missense	M/V	231	Dtnbp1	ENSMUST00000072329.14:c.691A>G	ENSMUSP00000072170.7:p.Met231Val	H-2-Db	9	10	2	SVEVNVDVL	SMEVNVDVL	NetMHCpan	224.8	73.1	0.325	111	0.324	276.933	66.317	0.239	31.1	515.13	73.1	224.8	67.08416215	293.5080385	65.54959308	260.3574444	M3_p20	0.842857143	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.316	111	0	0	NA	13qA5	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr13	22293238	22293238	C	A	ENSMUST00000228382.1	NA	ENSMUSG00000069295	missense	L/I	16	Vmn1r196	ENSMUST00000228382.1:c.46C>A	ENSMUSP00000154358.1:p.Leu16Ile	H-2-Kb	8	9	3	VFILFTGL	VFLLFTGL	NetMHC	7.89	7.99	1.013	204	0.216	11.402	10.125	0.888	7.99	7.89	21.8	19.8	9.241447486	10.73346637	11.00880046	12.07090967	M3_p20	2.371428571	2.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.225	204	0	0	NA	13qA3.1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	0.996314844	sgMsh2	cell line
chr13	100811369	100811369	CA	C	ENSMUST00000067246.5	1	ENSMUSG00000021629	FS	F/X	500	Slc30a5	ENSMUST00000067246.5:c.1500del	ENSMUSP00000065764.4:p.Phe500LeufsTer10	H-2-Kb	8	6	6	IVIAFLCL	IVIAFFVF	SMMPMBEC	37.822	251.038	6.637	118	0.169	40.717	350.893	8.618	384.95	48.89	364.7	38.9	337.0854446	42.53436955	251.0383085	37.82160895	M3_p20	3.342857143	3.442857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.165	118	0	0	NA	13qD1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	0.730630886	sgMsh2	cell line
chr13	97172972	97172972	G	T	ENSMUST00000161639.7	1	ENSMUSG00000021666	missense	A/S	646	Gfm2	ENSMUST00000161639.7:c.1936G>T	ENSMUSP00000125656.1:p.Ala646Ser	H-2-Kb	8	10	2	VSMTLHSL	VAMTLHSL	NetMHCpan	28.1	61.5	2.189	323	0.164	63.495	166.981	2.63	129.44	49.59	61.5	28.1	230.5366617	89.89592386	204.5219854	77.39982879	M3_p20	0.571428571	0.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.175	323	0	0	NA	13qD1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	0.774911545	sgMsh2	cell line
chr12	108361203	108361203	T	C	ENSMUST00000021684.5	1	ENSMUSG00000021259	missense	F/L	425	Cyp46a1	ENSMUST00000021684.5:c.1273T>C	ENSMUSP00000021684.4:p.Phe425Leu	H-2-Kb	8	11	1	LTYFPFSL	FTYFPFSL	NetMHCpan	22.8	31.8	1.395	118	0.356	102.142	85.132	0.833	67.05	60.82	31.8	22.8	103.2143305	143.4630303	134.1961326	157.666708	M3_p20	0.714285714	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.338	118	0	0	NA	12qF1	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr12	111543168	111543168	T	G	ENSMUST00000166123.8	1	ENSMUSG00000021282	missense	H/Q	323	Eif5	ENSMUST00000166123.8:c.969T>G	ENSMUSP00000126825.1:p.His323Gln	H-2-Kb	8	8	4	VAMQQAQL	VAMHQAQL	NetMHC	67.27	126.63	1.882	230	0.043	102.994	139.297	1.352	126.63	67.27	106.8	125.6	159.4924025	101.0974031	151.9637493	104.8914285	M3_p20	-0.171428571	-0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.051	230	0	0	NA	12qF1	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	0.225831365	sgMsh2	cell line
chr12	113357518	113357518	T	C	ENSMUST00000223179.1	NA	ENSMUSG00000076615	missense	K/R	374	Ighg3	ENSMUST00000223179.1:c.1120A>G	ENSMUSP00000152559.1:p.Lys374Arg	H-2-Kb	8	10	2	VRWIFSSV	VKWIFSSV	NetMHC	129.56	120.6	0.931	173	0.185	141.385	108.131	0.765	120.6	129.56	160.3	222.3	95.66211974	149.1900983	91.56721386	133.5795574	M3_p20	0.642857143	0.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.183	173	0	0	NA	12qF1	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	0.810336073	sgMsh2	cell line
chr13	24069691	24069691	C	T	ENSMUST00000072889.11	1	ENSMUSG00000021338	missense	R/H	819	Carmil1	ENSMUST00000072889.11:c.2456G>A	ENSMUSP00000072662.5:p.Arg819His	H-2-Kb	8	7	5	ISIPHTFV	ISIPRTFV	NetMHCpan	135	551.6	4.086	337	0.276	143.522	942.936	6.57	1291.3	147.17	551.6	135	911.4650073	139.8749679	974.4061133	185.6692572	M3_p20	0.742857143	0.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.264	337	0	0	NA	13qA3.1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr13	54221267	54221267	TC	T	ENSMUST00000038101.3	1	ENSMUSG00000034987	FS	S/X	374	Hrh2	ENSMUST00000038101.3:c.1122del	ENSMUSP00000038170.3:p.Phe375SerfsTer53	H-2-Kb	8	26	0	SNHHYISV	NA	NetMHCpan	84.2	NA	NA	43	0.163	192.438	NA	NA	NA	148.97	NA	84.2	NA	235.9065504	NA	249.310173	M3_p20	-0.471428571	-0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.185	43	0	0	NA	13qB1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	0.819192205	sgMsh2	cell line
chr13	21142224	21142224	TA	T	ENSMUST00000216039.2	3	ENSMUSG00000045474	FS	Y/X	278	Olfr1368	ENSMUST00000216039.2:c.832del	ENSMUSP00000149549.1:p.Tyr278ThrfsTer11	H-2-Kb	8	6	6	FFTLFTPL	FFTLFYTI	SMM	62.05	779.363	12.56	259	0.286	125.007	1579.98	12.639	2251.93	176.89	2178.8	173.5	779.3633877	62.04974485	981.1603738	76.51384027	M3_p20	1.457142857	1.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.28	259	0	0	NA	13qA2	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr13	66956436	66956436	A	G	ENSMUST00000021990.3	1	ENSMUSG00000021518	missense	E/G	124	Ptdss1	ENSMUST00000021990.3:c.371A>G	ENSMUSP00000021990.3:p.Glu124Gly	H-2-Kb	8	6	6	LFLNFGQV	LFLNFEQV	SMMPMBEC	211.222	525.702	2.489	256	0.211	245.34	664.399	2.708	800.67	267.97	1340.6	694.6	528.128981	222.7101447	525.7024488	211.2224132	M3_p20	0.885714286	0.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.236	256	0	0	NA	13qB3	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr13	70768603	70768603	T	C	ENSMUST00000080145.12	1	ENSMUSG00000049538	missense	N/D	757	Adamts16	ENSMUST00000080145.12:c.2269A>G	ENSMUSP00000079041.6:p.Asn757Asp	H-2-Kb	8	9	3	STDQYYHM	STNQYYHM	SMM	216.142	94.567	0.438	172	0.203	313.997	101.323	0.323	85.06	399.57	164.3	648	94.56708451	216.1424152	108.0786721	228.4230889	M3_p20	-1.657142857	-1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.198	172	0	0	NA	13qC1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	0.876757063	sgMsh2	cell line
chr13	13002264	13002264	T	G	ENSMUST00000110594.3	1	ENSMUSG00000079092	missense	N/T	26	Prl2c2	ENSMUST00000110594.3:c.77A>C	ENSMUSP00000106224.2:p.Asn26Thr	H-2-Kb	8	5	7	SSLLWKTV	SSLLWKNV	SMMPMBEC	367.062	128.452	0.35	409	0.232	405.23	136.123	0.336	80.4	413.06	202.2	397.4	143.7937467	427.3069928	128.4517425	367.0624846	M3_p20	0.785714286	0.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.233	409	0	0	NA	13qA1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr13	9662244	9662244	CA	C	ENSMUST00000174552.7	1	ENSMUSG00000048264	FS	K/X	1468	Dip2c	ENSMUST00000174552.7:c.4405del	ENSMUSP00000133806.1:p.Ser1469ValfsTer14	H-2-Kb	8	12	1	VSQNVLSL	NA	SMM	218.645	NA	NA	257	0.315	371.865	NA	NA	NA	425.5	NA	654	NA	218.6452264	NA	318.2291802	M3_p20	0.457142857	0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.307	257	0	0	NA	13qA1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr12	116142882	116142882	A	G	ENSMUST00000011315.9	1	ENSMUSG00000011171	missense	Q/R	366	Vipr2	ENSMUST00000011315.9:c.1097A>G	ENSMUSP00000011315.3:p.Gln366Arg	H-2-Kb	8	6	6	CVGSFRGL	CVGSFQGL	SMMPMBEC	373.027	572.453	1.535	336	0.089	441.993	621.177	1.405	761.75	617.03	669.9	510.1	519.6847826	373.8866857	572.4532166	373.0267702	M3_p20	0.671428571	0.671428571	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.091	336	0	0	NA	12qF2	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	0.402954004	sgMsh2	cell line
chr13	22293238	22293238	C	A	ENSMUST00000228382.1	NA	ENSMUSG00000069295	missense	L/I	16	Vmn1r196	ENSMUST00000228382.1:c.46C>A	ENSMUSP00000154358.1:p.Leu16Ile	H-2-Kb	9	8	4	TVFILFTGL	TVFLLFTGL	NetMHCpan	13.2	12.3	0.932	204	0.216	39.525	35.877	0.908	13.93	14	12.3	13.2	57.82424886	71.63248211	61.55310989	65.05040428	M3_p20	2.371428571	2.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.225	204	0	0	NA	13qA3.1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	0.996314844	sgMsh2	cell line
chr13	34075091	34075091	A	T	ENSMUST00000056427.9	1	ENSMUSG00000058672	missense	C/S	239	Tubb2a	ENSMUST00000056427.9:c.715T>A	ENSMUSP00000060246.8:p.Cys239Ser	H-2-Kb	9	10	2	TSLRFPGQL	TCLRFPGQL	NetMHC	19.2	720.34	37.518	61	0.246	132.627	680.959	5.134	720.34	19.2	582.8	39.7	1300.498932	308.3968972	641.5787927	225.553723	M3_p20	0.057142857	0.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.24	61	0	0	NA	13qA3.3	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr13	65194254	65194254	G	A	ENSMUST00000221659.1	5	ENSMUSG00000032999	missense	H/Y	526	Nlrp4f	ENSMUST00000221659.1:c.1576C>T	ENSMUSP00000152151.1:p.His526Tyr	H-2-Kb	9	9	3	IHYKLYQCL	IHHKLYQCL	NetMHC	30.43	543.91	17.874	110	0.318	51.872	472.901	9.117	543.91	30.43	574.8	45.5	401.8925911	70.64964761	316.4098538	58.24383998	M3_p20	0.014285714	0.014285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.277	110	0	0	NA	13qB3	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr13	97172972	97172972	G	T	ENSMUST00000161639.7	1	ENSMUSG00000021666	missense	A/S	646	Gfm2	ENSMUST00000161639.7:c.1936G>T	ENSMUSP00000125656.1:p.Ala646Ser	H-2-Kb	9	10	2	VSMTLHSLM	VAMTLHSLM	NetMHC	38.13	69.61	1.826	323	0.164	88.418	117.312	1.327	69.61	38.13	70.9	43.1	163.7231154	134.9304597	168.3642965	133.7365144	M3_p20	0.957142857	0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.175	323	0	0	NA	13qD1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	0.774911545	sgMsh2	cell line
chr13	21142224	21142224	TA	T	ENSMUST00000216039.2	3	ENSMUSG00000045474	FS	Y/X	278	Olfr1368	ENSMUST00000216039.2:c.832del	ENSMUSP00000149549.1:p.Tyr278ThrfsTer11	H-2-Kb	9	5	7	QFFTLFTPL	QFFTLFYTI	NetMHCpan	73.2	503.6	6.88	259	0.286	80.699	518.621	6.427	585.33	79.72	503.6	73.2	384.6892055	81.67892251	533.6419961	100.9834026	M3_p20	1.457142857	1.457142857	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.28	259	0	0	NA	13qA2	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr13	100061007	100061007	T	A	ENSMUST00000038104.11	5	ENSMUSG00000049658	missense	I/F	957	Bdp1	ENSMUST00000038104.11:c.2869A>T	ENSMUSP00000038321.5:p.Ile957Phe	H-2-Kb	9	7	5	TTGEFCTNL	TTGEICTNL	NetMHC	96.64	2956.27	30.591	160	0.225	266.273	2897.591	10.882	2956.27	96.64	2950	149.5	2845.181656	458.2579416	2047.623004	383.0451784	M3_p20	0.142857143	0.142857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.231	160	0	0	NA	13qD1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr13	67542395	67542395	TA	T	ENSMUST00000181892.8	1	ENSMUSG00000095432	FS	Y/X	249	Zfp748	ENSMUST00000181892.8:c.745del	ENSMUSP00000137928.1:p.Tyr249ThrfsTer47	H-2-Kb	9	44	0	VAMPFVHSI	NA	NetMHCpan	32.9	NA	NA	198	0.212	254.832	NA	NA	NA	98.41	NA	32.9	NA	411.2538721	NA	441.8247089	M3_p20	1.114285714	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.223	198	0	0	NA	13qB3	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	0.987458712	sgMsh2	cell line
chr13	95707884	95707884	T	G	ENSMUST00000068603.7	1	ENSMUSG00000021676	missense	K/N	505	Iqgap2	ENSMUST00000068603.7:c.1515A>C	ENSMUSP00000067685.6:p.Lys505Asn	H-2-Kb	9	4	8	LFYTKSQNL	LFYTKSQKL	NetMHC	102.71	231.77	2.257	113	0.274	163.174	227.849	1.396	231.77	102.71	423.3	178.4	223.9288243	147.9483071	214.4124503	180.8214719	M3_p20	-1.414285714	-0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe	3	0.315	113	0	0	NA	13qD1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr13	54221267	54221267	TC	T	ENSMUST00000038101.3	1	ENSMUSG00000034987	FS	S/X	374	Hrh2	ENSMUST00000038101.3:c.1122del	ENSMUSP00000038170.3:p.Phe375SerfsTer53	H-2-Kb	9	26	0	SNHHYISVL	NA	NetMHCpan	68.7	NA	NA	43	0.163	178.271	NA	NA	NA	141.14	NA	68.7	NA	229.67303	NA	215.4021332	M3_p20	0.571428571	0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.185	43	0	0	NA	13qB1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	0.819192205	sgMsh2	cell line
chr13	84294754	84294754	TA	T	ENSMUST00000057495.9	1	ENSMUSG00000035762	FS	L/X	446	Tmem161b	ENSMUST00000057495.9:c.1343del	ENSMUSP00000055208.7:p.Asn448ThrfsTer15	H-2-Kb	9	9	5	SSLKTSSRL	NA	NetMHC	149.93	NA	NA	118	0.322	357.985	NA	NA	NA	149.93	NA	436	NA	279.9690348	NA	463.713778	M3_p20	-0.442857143	-0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.319	118	0	0	NA	13qC3	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr13	75878849	75878849	T	G	ENSMUST00000022078.11	1	ENSMUSG00000021589	missense	K/N	468	Rhobtb3	ENSMUST00000022078.11:c.1404A>C	ENSMUSP00000022078.5:p.Lys468Asn	H-2-Kb	9	10	2	SNETFLSFL	SKETFLSFL	NetMHC	152.36	2784.6	18.276	237	0.308	305.223	2383.314	7.808	2784.6	152.36	3434.7	227.4	1982.028979	421.8033261	1691.414308	383.0451784	M3_p20	1.171428571	1.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.307	237	0	0	NA	13qC1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr13	95707886	95707886	T	G	ENSMUST00000068603.7	1	ENSMUSG00000021676	missense	K/Q	505	Iqgap2	ENSMUST00000068603.7:c.1513A>C	ENSMUSP00000067685.6:p.Lys505Gln	H-2-Kb	9	4	8	LFYTKSQQL	LFYTKSQKL	SMMPMBEC	150.401	214.412	1.426	113	0.274	157.428	227.849	1.447	231.77	154.86	423.3	361.4	223.9288243	159.9963223	214.4124503	150.4007493	M3_p20	-1.414285714	-0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe	3	0.315	113	0	0	NA	13qD1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr13	19352311	19352311	G	A	ENSMUST00000179181.2	NA	ENSMUSG00000076757	missense	A/T	181	Trgc4	ENSMUST00000179181.2:c.540G>A	ENSMUSP00000138488.1:p.Ala181Thr	H-2-Kb	9	4	9	VVFCLFRRT	VVFCLFRRA	NetMHCpan	194.9	147.7	0.758	354	0.271	207.656	243.647	1.173	176.66	239.79	147.7	194.9	331.2150024	213.3585248	310.6347231	201.9528563	M3_p20	0.314285714	2.257142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.265	354	0	0	NA	13qA2	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr13	66956436	66956436	A	G	ENSMUST00000021990.3	1	ENSMUSG00000021518	missense	E/G	124	Ptdss1	ENSMUST00000021990.3:c.371A>G	ENSMUSP00000021990.3:p.Glu124Gly	H-2-Kb	9	5	7	LLFLNFGQV	LLFLNFEQV	NetMHC	327.93	648.72	1.978	256	0.211	449.444	713.377	1.587	648.72	327.93	701.9	412.2	1122.30268	778.2336405	724.853099	486.6872848	M3_p20	0.885714286	1.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.236	256	0	0	NA	13qB3	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr13	75878849	75878849	T	G	ENSMUST00000022078.11	1	ENSMUSG00000021589	missense	K/N	468	Rhobtb3	ENSMUST00000022078.11:c.1404A>C	ENSMUSP00000022078.5:p.Lys468Asn	H-2-Kb	9	9	3	VSNETFLSF	VSKETFLSF	SMM	343.645	425.706	1.239	237	0.308	405.045	443.114	1.094	688.38	363.15	407.4	540.2	425.7062242	343.6449768	460.5215948	446.9407979	M3_p20	0.128571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.307	237	0	0	NA	13qC1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr12	111543168	111543168	T	G	ENSMUST00000166123.8	1	ENSMUSG00000021282	missense	H/Q	323	Eif5	ENSMUST00000166123.8:c.969T>G	ENSMUSP00000126825.1:p.His323Gln	H-2-Kb	9	7	5	VVAMQQAQL	VVAMHQAQL	NetMHC	383.57	82.13	0.214	230	0.043	443.989	119.596	0.269	82.13	383.57	108.5	517.8	156.7147954	457.2039776	130.6922997	430.7745129	M3_p20	-0.171428571	0.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.051	230	0	0	NA	12qF1	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	0.225831365	sgMsh2	cell line
chr13	63033045	63033045	T	C	ENSMUST00000091560.10	1	ENSMUSG00000021458	missense	S/P	274	Aopep	ENSMUST00000091560.10:c.820T>C	ENSMUSP00000089148.4:p.Ser274Pro	H-2-Kb	9	5	7	CVYTMGPPI	CVYTMGSPI	NetMHCpan	343.4	246.8	0.719	148	0.236	424.354	333.906	0.787	312.09	444.96	246.8	343.4	355.7214058	403.747643	486.6872848	541.0656958	M3_p20	0.114285714	0.657142857	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.255	148	0	0	NA	13qB3	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr13	84294754	84294754	TA	T	ENSMUST00000057495.9	1	ENSMUSG00000035762	FS	L/X	446	Tmem161b	ENSMUST00000057495.9:c.1343del	ENSMUSP00000055208.7:p.Asn448ThrfsTer15	H-2-Kb	9	18	0	SFFEDFCHF	NA	SMM	375.068	NA	NA	118	0.322	433.889	NA	NA	NA	507.12	NA	463.9	NA	375.0679891	NA	403.8778168	M3_p20	0.1	0.442857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.319	118	0	0	NA	13qC3	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr13	77761927	77761927	G	A	ENSMUST00000163257.8	5	ENSMUSG00000064138	missense	A/T	100	Fam172a	ENSMUST00000163257.8:c.298G>A	ENSMUSP00000133140.1:p.Ala100Thr	H-2-Kb	9	4	8	WNQKRYETL	WNQKRYEAL	SMMPMBEC	335.931	312.069	0.929	115	0.235	475.504	401.646	0.845	401.4	524.32	1301	1165.9	401.8925911	426.6875784	312.0685478	335.930936	M3_p20	-1.942857143	-1.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.221	115	0	0	NA	13qC1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	0.97860258	sgMsh2	cell line
chr13	34919785	34919785	T	C	ENSMUST00000223834.1	NA	ENSMUSG00000021414	missense	K/R	27	Fam217a	ENSMUST00000223834.1:c.80A>G	ENSMUSP00000153297.1:p.Lys27Arg	H-2-Kb	9	7	5	CAFDRASWL	CAFDKASWL	SMM	175.837	263.093	1.496	128	0.297	349.958	602.637	1.722	928.38	697.73	774.5	425.6	263.0934282	175.8368925	430.7745129	274.3152803	M3_p20	-0.185714286	0.014285714	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.287	128	0	0	NA	13qA3.3	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr15	38022377	38022377	A	G	ENSMUST00000226414.1	NA	ENSMUSG00000037487	missense	S/P	628	Ubr5	ENSMUST00000226414.1:c.1882T>C	ENSMUSP00000154293.1:p.Ser628Pro	H-2-Db	9	4	8	SSIASSAPM	SSIASSASM	NetMHC	50.68	369.5	7.291	322	0.152	92.853	414.677	4.466	369.5	50.68	341.8	56.4	459.8540333	129.3063938	512.3538453	136.3232716	M3_p20	0.971428571	0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.155	322	0	0	NA	15qB3.1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	0.686350226	sgMsh2	cell line
chr14	118043133	118043133	A	G	ENSMUST00000022725.3	1	ENSMUSG00000022129	missense	V/A	157	Dct	ENSMUST00000022725.3:c.470T>C	ENSMUSP00000022725.2:p.Val157Ala	H-2-Db	9	10	2	YAITTQHWL	YVITTQHWL	NetMHC	62.94	1533.59	24.366	89	0.303	333.838	2644.338	7.921	1533.59	62.94	1321	80.7	3755.08697	586.9755345	3780.680698	592.3385529	M3_p20	-0.1	-0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.291	89	0	0	NA	14qE4	chr14-75846538-123291781	3	2	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr14	62708908	62708908	A	G	ENSMUST00000223585.1	NA	ENSMUSG00000035161	missense	V/A	388	Ints6	ENSMUST00000223585.1:c.1163T>C	ENSMUSP00000152954.1:p.Val388Ala	H-2-Db	9	4	8	VMPYNYPAL	VMPYNYPVL	NetMHC	101.83	72.21	0.709	249	0.06	145.519	164.986	1.134	72.21	101.83	219.7	295.5	158.3507045	130.5028512	171.6208308	160.5350989	M3_p20	-0.528571429	-0.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.06	249	0	0	NA	14qD1	chr14-53336808-75777336	3	2	1	0.91	4.029540036	NA	1	0.265683958	sgMsh2	cell line
chr14	62708908	62708908	A	G	ENSMUST00000223585.1	NA	ENSMUSG00000035161	missense	V/A	388	Ints6	ENSMUST00000223585.1:c.1163T>C	ENSMUSP00000152954.1:p.Val388Ala	H-2-Kb	8	5	7	MPYNYPAL	MPYNYPVL	SMM	13.175	31.027	2.355	249	0.06	18.272	64.778	3.545	86.23	17.28	260.5	174	31.02701531	13.17467771	43.32514252	19.26371303	M3_p20	-0.528571429	-0.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.06	249	0	0	NA	14qD1	chr14-53336808-75777336	3	2	1	0.91	4.029540036	NA	1	0.265683958	sgMsh2	cell line
chr15	47881537	47881537	A	G	ENSMUST00000100670.9	5	ENSMUSG00000022311	missense	L/P	1458	Csmd3	ENSMUST00000100670.9:c.4373T>C	ENSMUSP00000098235.3:p.Leu1458Pro	H-2-Kb	8	6	6	VSLQFPAF	VSLQFLAF	NetMHC	17.81	31.51	1.769	109	0.119	50.364	58.934	1.17	31.51	17.81	60.6	48.4	60.35871704	53.42444264	57.50955406	52.32870654	M3_p20	0.757142857	0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.139	109	0	0	NA	15qB3.3	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	0.61550117	sgMsh2	cell line
chr15	47704155	47704155	T	A	ENSMUST00000100670.9	5	ENSMUSG00000022311	missense	D/V	2204	Csmd3	ENSMUST00000100670.9:c.6611A>T	ENSMUSP00000098235.3:p.Asp2204Val	H-2-Kb	8	4	8	TSLYFHSV	TSLYFHSD	NetMHCpan	23.6	6723.8	284.907	389	0.165	48.966	3329.941	68.005	6179.33	26.03	6723.8	23.6	480.5515695	71.90183929	409.0157201	71.90183929	M3_p20	0.671428571	0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.175	389	0	0	NA	15qB3.3	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	0.774911545	sgMsh2	cell line
chr14	119139009	119139009	T	C	ENSMUST00000065904.4	1	ENSMUSG00000053465	missense	F/L	199	Hs6st3	ENSMUST00000065904.4:c.595T>C	ENSMUSP00000070394.3:p.Phe199Leu	H-2-Kb	8	4	8	ETWLFSRL	ETWLFSRF	SMMPMBEC	35.624	447.445	12.56	40	0.2	41.155	751.555	18.262	863.91	37.61	639.2	44.7	901.0315536	55.42937734	447.4453509	35.62377999	M3_p20	0.5	0.5	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.222	40	0	0	NA	14qE4	chr14-75846538-123291781	3	2	1	0.91	4.029540036	NA	1	0.983030646	sgMsh2	cell line
chr14	52036009	52036009	A	G	ENSMUST00000214071.1	5	ENSMUSG00000044286	missense	M/T	34	Olfr221	ENSMUST00000214071.1:c.101T>C	ENSMUSP00000150675.1:p.Met34Thr	H-2-Kb	8	10	2	VTYAITVL	VMYAITVL	NetMHCpan	26.2	23.8	0.908	112	0.062	60.149	92.464	1.537	54.39	47.73	23.8	26.2	137.3219621	75.63799359	130.5389154	72.56713881	M3_p20	1.657142857	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.08	112	0	0	NA	14qC2	chr14-44505690-53079320	3.2252983	3.2252983	0	0.91	4.029540036	NA	1	0.354245278	sgMsh2	cell line
chr14	123515710	123515710	C	A	ENSMUST00000000201.6	5	ENSMUSG00000000197	missense	R/I	288	Nalcn	ENSMUST00000000201.6:c.863G>T	ENSMUSP00000000201.5:p.Arg288Ile	H-2-Kb	8	6	6	VFLMYIAI	VFLMYRAI	SMM	80.675	70.265	0.871	169	0.438	117.27	70.672	0.603	62.95	152.93	94.9	239.3	70.26515361	80.67519058	71.07878574	81.60936526	M3_p20	2.571428571	2.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.426	169	0	0	NA	14qE5	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	sgMsh2	cell line
chr15	4759828	4759828	A	G	ENSMUST00000162585.7	1	ENSMUSG00000022181	missense	T/A	252	C6	ENSMUST00000162585.7:c.754A>G	ENSMUSP00000124417.1:p.Thr252Ala	H-2-Kb	8	10	2	KAEFYKNL	KTEFYKNL	NetMHCpan	83	74.2	0.894	81	0.605	190.225	156.053	0.82	169.63	155.16	74.2	83	189.1211064	292.2402293	142.4754378	225.2890066	M3_p20	-0.542857143	-0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.601	81	0	0	NA	15qA1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	3	1	sgMsh2	cell line
chr15	3325898	3325898	C	A	ENSMUST00000069451.10	1	ENSMUSG00000055737	missense	R/M	301	Ghr	ENSMUST00000069451.10:c.902G>T	ENSMUSP00000069457.4:p.Arg301Met	H-2-Kb	8	4	8	VIFSKQQM	VIFSKQQR	NetMHCpan	188.2	12750.8	67.751	235	0.596	363.498	6741.575	18.546	9458.39	228.41	12750.8	188.2	2790.872523	500.8872766	4024.76011	498.5859086	M3_p20	-0.357142857	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.615	235	0	0	NA	15qA1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	3	1	sgMsh2	cell line
chr14	61213807	61213807	G	T	ENSMUST00000119943.7	5	ENSMUSG00000048279	missense	R/M	4434	Sacs	ENSMUST00000119943.7:c.13301G>T	ENSMUSP00000113377.1:p.Arg4434Met	H-2-Kb	8	4	8	AGQTYSQM	AGQTYSQR	NetMHC	334.09	17239.17	51.6	108	0.102	473.483	10497.647	22.171	17239.17	334.09	18579.9	617.9	2683.737286	481.6593553	3756.124682	465.3074435	M3_p20	-1.185714286	-1.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.099	108	0	0	NA	14qD1	chr14-53336808-75777336	3	2	1	0.91	4.029540036	NA	1	0.438378531	sgMsh2	cell line
chr14	23436016	23436016	TA	T	ENSMUST00000188285.6	1	ENSMUSG00000063142	FS	Y/X	680	Kcnma1	ENSMUST00000188285.6:c.2038del	ENSMUSP00000140275.1:p.Tyr680ThrfsTer31	H-2-Kb	8	8	4	AFFTARPV	NA	SMM	285.588	NA	NA	70	0.314	464.476	NA	NA	NA	585.6	NA	996.8	NA	285.5880296	NA	343.3523309	M3_p20	0.685714286	0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.296	70	0	0	NA	14qA3	chr14-19751082-41183403	3	2	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr15	28346829	28346829	T	C	ENSMUST00000067048.7	5	ENSMUSG00000022262	missense	M/T	2486	Dnah5	ENSMUST00000067048.7:c.7457T>C	ENSMUSP00000069751.6:p.Met2486Thr	H-2-Kb	8	4	8	RLFVFAMT	RLFVFAMM	SMMPMBEC	182.28	37.996	0.208	102	0.392	384.705	30.353	0.079	22.71	798.3	19.8	433.1	47.39581548	336.3101696	37.99618556	182.2804114	M3_p20	2.371428571	2.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.403	102	0	0	NA	15qB1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr14	62708908	62708908	A	G	ENSMUST00000223585.1	NA	ENSMUSG00000035161	missense	V/A	388	Ints6	ENSMUST00000223585.1:c.1163T>C	ENSMUSP00000152954.1:p.Val388Ala	H-2-Kb	9	4	8	VMPYNYPAL	VMPYNYPVL	NetMHC	15.9	42.88	2.697	249	0.06	39.951	62.164	1.556	42.88	15.9	65.7	38.3	58.62866429	41.60159675	72.31859831	58.3781059	M3_p20	-0.528571429	-0.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.06	249	0	0	NA	14qD1	chr14-53336808-75777336	3	2	1	0.91	4.029540036	NA	1	0.265683958	sgMsh2	cell line
chr14	62708908	62708908	A	G	ENSMUST00000223585.1	NA	ENSMUSG00000035161	missense	V/A	388	Ints6	ENSMUST00000223585.1:c.1163T>C	ENSMUSP00000152954.1:p.Val388Ala	H-2-Kb	9	5	7	MPYNYPALL	MPYNYPVLL	NetMHC	48.73	323.54	6.639	249	0.06	271.124	452.895	1.67	323.54	48.73	265.7	138.5	582.2506741	403.747643	640.1032025	472.3348608	M3_p20	0.242857143	0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.06	249	0	0	NA	14qD1	chr14-53336808-75777336	3	2	1	0.91	4.029540036	NA	1	0.265683958	sgMsh2	cell line
chr14	62708908	62708908	A	G	ENSMUST00000223585.1	NA	ENSMUSG00000035161	missense	V/A	388	Ints6	ENSMUST00000223585.1:c.1163T>C	ENSMUSP00000152954.1:p.Val388Ala	H-2-Kb	9	7	5	YNYPALLPL	YNYPVLLPL	NetMHCpan	55.6	65.7	1.182	249	0.06	116.892	188.475	1.612	170.36	87.53	65.7	55.6	206.5903351	146.2547568	242.2423104	215.8986864	M3_p20	1.242857143	1.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.06	249	0	0	NA	14qD1	chr14-53336808-75777336	3	2	1	0.91	4.029540036	NA	1	0.265683958	sgMsh2	cell line
chr15	7247153	7247153	A	G	ENSMUST00000096494.4	1	ENSMUSG00000042961	missense	Y/H	511	Egflam	ENSMUST00000096494.4:c.1531T>C	ENSMUSP00000094238.4:p.Tyr511His	H-2-Kb	9	4	8	ITFRTPLHL	ITFRTPLYL	NetMHCpan	51.9	65	1.252	36	0.611	232.478	263.806	1.135	144.69	97.58	65	51.9	382.9217191	367.3753391	481.1162215	439.7947088	M3_p20	0.057142857	0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.615	36	0	0	NA	15qA1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	3	1	sgMsh2	cell line
chr15	6786507	6786507	CT	C	ENSMUST00000061656.7	1	ENSMUSG00000050310	FS	F/X	1087	Rictor	ENSMUST00000061656.7:c.3264del	ENSMUSP00000051809.6:p.Phe1088LeufsTer7	H-2-Kb	9	7	6	NSFPFLAPA	NSFPFFGSS	NetMHCpan	113	231.6	2.05	100	0.18	363.513	404.628	1.113	714.21	114.52	231.6	113	321.4474612	612.5055101	487.8092149	621.2265381	M3_p20	1.4	1.4	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;Vardict	3	0.201	100	0	0	NA	15qA1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	0.890041261	sgMsh2	cell line
chr14	20729830	20729830	C	A	ENSMUST00000223679.1	NA	ENSMUSG00000039308	missense	S/I	114	Ndst2	ENSMUST00000223679.1:c.341G>T	ENSMUSP00000153036.1:p.Ser114Ile	H-2-Kb	9	6	6	SRFRYITEL	SRFRYSTEL	NetMHCpan	100.6	138.2	1.374	249	0.088	199.505	181.841	0.911	92.82	119.04	138.2	100.6	225.4810248	279.9690348	309.920283	299.3987618	M3_p20	0.157142857	0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.067	249	0	0	NA	14qA3	chr14-19751082-41183403	3	2	1	0.91	4.029540036	NA	1	0.29668042	sgMsh2	cell line
chr15	44546608	44546608	A	G	ENSMUST00000209244.1	5	ENSMUSG00000038725	missense	I/V	2504	Pkhd1l1	ENSMUST00000209244.1:c.7510A>G	ENSMUSP00000147447.1:p.Ile2504Val	H-2-Kb	9	3	9	QSYNRAITV	QSYNRAITI	NetMHC	126.51	181.23	1.433	293	0.181	211.495	223.671	1.058	181.23	126.51	213.4	211.1	233.9429705	211.8897751	287.2433612	278.131386	M3_p20	0.071428571	0.071428571	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	293	0	0	NA	15qB3.2	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	0.885613195	sgMsh2	cell line
chr15	3325898	3325898	C	A	ENSMUST00000069451.10	1	ENSMUSG00000055737	missense	R/M	301	Ghr	ENSMUST00000069451.10:c.902G>T	ENSMUSP00000069457.4:p.Arg301Met	H-2-Kb	9	4	8	VIFSKQQMI	VIFSKQQRI	NetMHC	128.02	112.77	0.881	235	0.596	167.824	129.667	0.773	112.77	128.02	141	229.5	118.334124	147.6080354	149.021867	188.039895	M3_p20	-0.357142857	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.615	235	0	0	NA	15qA1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	3	1	sgMsh2	cell line
chr15	38022377	38022377	A	G	ENSMUST00000226414.1	NA	ENSMUSG00000037487	missense	S/P	628	Ubr5	ENSMUST00000226414.1:c.1882T>C	ENSMUSP00000154293.1:p.Ser628Pro	H-2-Kb	9	4	8	SSIASSAPM	SSIASSASM	NetMHC	131.72	468.59	3.557	322	0.152	324.894	631.128	1.943	468.59	131.72	625.3	284.1	636.9568317	365.6874028	798.4541822	466.9280884	M3_p20	0.971428571	0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.155	322	0	0	NA	15qB3.1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	0.686350226	sgMsh2	cell line
chr14	56761852	56761852	A	C	ENSMUST00000022507.12	1	ENSMUSG00000021938	missense	L/V	316	Pspc1	ENSMUST00000022507.12:c.946T>G	ENSMUSP00000022507.5:p.Leu316Val	H-2-Kb	9	11	1	VMLMRQDLM	LMLMRQDLM	SMM	117.249	337.373	2.877	183	0.055	170.678	505.031	2.959	672.69	215.68	1505.6	463.1	337.3727491	117.2492302	325.2744865	125.6753201	M3_p20	-0.014285714	0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.076	183	0	0	NA	14qC3	chr14-53336808-75777336	3	2	1	0.91	4.029540036	NA	1	0.336533014	sgMsh2	cell line
chr14	123515710	123515710	C	A	ENSMUST00000000201.6	5	ENSMUSG00000000197	missense	R/I	288	Nalcn	ENSMUST00000000201.6:c.863G>T	ENSMUSP00000000201.5:p.Arg288Ile	H-2-Kb	9	5	7	WVFLMYIAI	WVFLMYRAI	SMM	126.506	178.694	1.413	169	0.438	190.437	187.572	0.985	117.77	251.38	308	1796.8	178.6940122	126.5056726	196.4490803	129.4941055	M3_p20	2.571428571	2.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.426	169	0	0	NA	14qE5	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	sgMsh2	cell line
chr15	4759828	4759828	A	G	ENSMUST00000162585.7	1	ENSMUSG00000022181	missense	T/A	252	C6	ENSMUST00000162585.7:c.754A>G	ENSMUSP00000124417.1:p.Thr252Ala	H-2-Kb	9	9	3	LKAEFYKNL	LKTEFYKNL	NetMHCpan	346.3	741.3	2.141	81	0.605	401.095	672.763	1.677	404.98	353.33	741.3	346.3	653.2960014	448.8590645	692.2293355	521.4948213	M3_p20	-0.542857143	-0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.601	81	0	0	NA	15qA1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	3	1	sgMsh2	cell line
chr14	52036009	52036009	A	G	ENSMUST00000214071.1	5	ENSMUSG00000044286	missense	M/T	34	Olfr221	ENSMUST00000214071.1:c.101T>C	ENSMUSP00000150675.1:p.Met34Thr	H-2-Kb	9	6	6	VVFLVTYAI	VVFLVMYAI	NetMHC	404.46	257.9	0.638	112	0.062	474.826	410.59	0.865	257.9	404.46	656.7	462	397.2921646	487.6519891	423.8869047	600.1364431	M3_p20	2.157142857	2.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.08	112	0	0	NA	14qC2	chr14-44505690-53079320	3.2252983	3.2252983	0	0.91	4.029540036	NA	1	0.354245278	sgMsh2	cell line
chr14	61213807	61213807	G	T	ENSMUST00000119943.7	5	ENSMUSG00000048279	missense	R/M	4434	Sacs	ENSMUST00000119943.7:c.13301G>T	ENSMUSP00000113377.1:p.Arg4434Met	H-2-Kb	9	3	9	SAGQTYSQM	SAGQTYSQR	SMM	331.979	3733.447	11.246	108	0.102	378.953	8422.531	22.226	12229.23	415.73	22557.7	1351.7	3733.447082	331.9785319	4615.832068	342.1763584	M3_p20	-1.185714286	-0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.099	108	0	0	NA	14qD1	chr14-53336808-75777336	3	2	1	0.91	4.029540036	NA	1	0.438378531	sgMsh2	cell line
chr14	55769194	55769194	T	C	ENSMUST00000170223.8	1	ENSMUSG00000022220	missense	T/A	1061	Adcy4	ENSMUST00000170223.8:c.3181A>G	ENSMUSP00000130530.1:p.Thr1061Ala	H-2-Kb	9	10	2	CAYFLNTDL	CTYFLNTDL	NetMHCpan	437.6	426.9	0.976	108	0.259	446.369	595.703	1.335	661.33	522.88	426.9	437.6	619.5979897	449.8937915	571.8077009	442.8432201	M3_p20	0.2	0.771428571	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.287	108	0	0	NA	14qC3	chr14-53336808-75777336	3	2	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr13	105444648	105444648	T	C	ENSMUST00000022235.5	NA	ENSMUSG00000021721	missense	L/P	132	Htr1a	ENSMUST00000022235.5:c.395T>C	ENSMUSP00000022235.4:p.Leu132Pro	H-2-Kb	9	9	3	IAPDRYWAI	IALDRYWAI	NetMHCpan	182.5	137.1	0.751	157	0.229	258.167	153.679	0.595	324.09	556.18	137.1	182.5	170.2589693	291.8166046	118.9186581	224.5173978	M3_p20	-0.785714286	-0.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.247	157	0	0	NA	13qD1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr15	3991830	3991830	T	G	ENSMUST00000046633.9	1	ENSMUSG00000041935	missense	K/T	81	AW549877	ENSMUST00000046633.9:c.242A>C	ENSMUSP00000038476.8:p.Lys81Thr	H-2-Kb	9	4	8	MTYFEENTL	MTYFEENKL	SMM	242.722	307.688	1.268	139	0.094	358.362	418.218	1.167	723.29	579.45	513.4	390.7	307.6876041	242.7224795	323.0353127	326.0243217	M3_p20	-0.842857143	-0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.097	139	0	0	NA	15qA1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	0.429522399	sgMsh2	cell line
chr16	16673096	16673096	T	C	ENSMUST00000206365.2	3	ENSMUSG00000048101	missense	K/R	295	Olfr19	ENSMUST00000206365.2:c.884A>G	ENSMUSP00000145655.2:p.Lys295Arg	H-2-Db	9	6	6	YSLRNRDLM	YSLRNKDLM	NetMHC	3.3	4.46	1.352	142	0.092	5.853	8.806	1.505	4.46	3.3	5.9	4.6	11.71170164	7.105914866	14.27479894	9.496640546	M3_p20	-0.928571429	-0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.095	142	0	0	NA	16qA3	chr16-4630421-97886207	3	2	1	0.91	4.029540036	NA	1	0.420666268	sgMsh2	cell line
chr15	103462798	103462798	A	C	ENSMUST00000047405.8	1	ENSMUSG00000022488	missense	N/T	239	Nckap1l	ENSMUST00000047405.8:c.716A>C	ENSMUSP00000035400.7:p.Asn239Thr	H-2-Db	9	10	2	ITPANSDTM	INPANSDTM	NetMHC	24.26	56.17	2.315	99	0.182	123.502	236.034	1.911	56.17	24.26	149.5	57.5	322.5670482	189.5047063	348.7947987	191.6769985	M3_p20	-0.914285714	-0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.187	99	0	0	NA	15qF3	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	sgMsh2	cell line
chr15	96997032	96997032	T	C	ENSMUST00000023101.9	1	ENSMUSG00000022464	missense	I/M	534	Slc38a4	ENSMUST00000023101.9:c.1602A>G	ENSMUSP00000023101.3:p.Ile534Met	H-2-Db	9	7	5	MALIMLDWI	MALIILDWI	NetMHC	61.31	1036.31	16.903	225	0.124	88.964	663.631	7.46	1036.31	61.31	287.6	73.8	715.5170714	150.5289388	611.7443966	104.128593	M3_p20	2.014285714	2.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.126	225	0	0	NA	15qF1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	0.557936313	sgMsh2	cell line
chr15	75839638	75839638	G	T	ENSMUST00000100538.3	1	ENSMUSG00000075600	missense	L/I	325	Zc3h3	ENSMUST00000100538.3:c.973C>A	ENSMUSP00000098106.2:p.Leu325Ile	H-2-Db	9	9	3	RAISPRTTL	RALSPRTTL	SMM	296.224	331.604	1.119	173	0.197	327.512	440.828	1.346	477.48	306.23	2374.7	1450.5	331.6041828	296.2238349	404.1755147	348.7947987	M3_p20	0	0	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.206	173	0	0	NA	15qD3	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	0.912181591	sgMsh2	cell line
chr16	3592590	3592590	A	G	ENSMUST00000216259.1	5	ENSMUSG00000051003	missense	S/G	65	Olfr161	ENSMUST00000216259.1:c.193A>G	ENSMUSP00000150825.1:p.Ser65Gly	H-2-Db	9	8	4	FFLGNLSFV	FFLSNLSFV	SMM	191.699	80.282	0.419	258	0.244	456.264	114.023	0.25	99.94	647.94	502	1445.2	80.28233585	191.6990674	128.1061561	264.5879126	M3_p20	1.414285714	1.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.259	258	0	0	NA	16qA1	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	sgMsh2	cell line
chr16	34198458	34198458	CG	C	ENSMUST00000114960.8	1	ENSMUSG00000061751	FS	P/X	1311	Kalrn	ENSMUST00000114960.8:c.3933del	ENSMUSP00000110611.2:p.Gly1312AlafsTer65	H-2-Db	9	13	0	SSIRNISSS	NA	SMM	162.039	NA	NA	175	0.309	454.194	NA	NA	NA	1014.13	NA	658.6	NA	162.0391663	NA	249.7870966	M3_p20	-0.2	-0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.302	175	0	0	NA	16qB3	chr16-4630421-97886207	3	2	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr15	101643595	101643595	T	A	ENSMUST00000229963.1	NA	ENSMUSG00000095241	missense	Y/F	468	Gm5478	ENSMUST00000229963.1:c.1403A>T	ENSMUSP00000155269.1:p.Tyr468Phe	H-2-Kb	8	7	5	SSHSFASV	SSHSYASV	NetMHC	6.34	8.19	1.292	173	0.208	20.43	27.345	1.339	8.19	6.34	24.3	16.1	32.26561891	26.28693795	30.39065077	24.75939338	M3_p20	0.457142857	0.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.21	173	0	0	NA	15qF2	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	0.929893855	sgMsh2	cell line
chr16	32298440	32298440	GA	G	ENSMUST00000171474.1	1	ENSMUSG00000014074	FS	E/X	273	Rnf168	ENSMUST00000171474.1:c.824del	ENSMUSP00000126484.1:p.Asn275IlefsTer31	H-2-Kb	8	12	2	KIYQHFLL	NA	NetMHC	15.4	NA	NA	32	0.406	20.587	NA	NA	NA	15.4	NA	17.2	NA	23.97397234	NA	30.25101842	M3_p20	0.985714286	0.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.415	32	0	0	NA	16qB3	chr16-4630421-97886207	3	2	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr15	81671120	81671120	G	T	ENSMUST00000174229.7	1	ENSMUSG00000022394	missense	K/N	191	L3mbtl2	ENSMUST00000174229.7:c.573G>T	ENSMUSP00000133967.1:p.Lys191Asn	H-2-Kb	8	8	4	HSYNAAPV	HSYKAAPV	NetMHC	50.75	46.65	0.919	175	0.206	106.75	121.221	1.136	46.65	50.75	188.3	236.1	128.7478543	109.3301641	113.6946424	104.169361	M3_p20	0.085714286	0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	175	0	0	NA	15qE1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr16	19566134	19566134	T	C	ENSMUST00000215476.1	5	ENSMUSG00000068535	missense	M/V	250	Olfr169	ENSMUST00000215476.1:c.748A>G	ENSMUSP00000150917.1:p.Met250Val	H-2-Kb	8	9	3	VIVYYGPF	VIMYYGPF	NetMHC	58.99	29.11	0.493	244	0.082	130.566	74.698	0.572	29.11	58.99	38.8	91.8	179.3659491	231.6007706	110.5961477	169.3323751	M3_p20	0.985714286	1.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.093	244	0	0	NA	16qA3	chr16-4630421-97886207	3	2	1	0.91	4.029540036	NA	1	0.411810136	sgMsh2	cell line
chr16	3592590	3592590	A	G	ENSMUST00000216259.1	5	ENSMUSG00000051003	missense	S/G	65	Olfr161	ENSMUST00000216259.1:c.193A>G	ENSMUSP00000150825.1:p.Ser65Gly	H-2-Kb	8	6	6	MYFFLGNL	MYFFLSNL	NetMHCpan	34	14.7	0.432	258	0.244	89.071	59.088	0.663	49.51	88.66	14.7	34	68.66572344	89.4828896	80.11982647	98.3422182	M3_p20	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.259	258	0	0	NA	16qA1	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	sgMsh2	cell line
chr16	26710559	26710559	T	C	ENSMUST00000096129.8	1	ENSMUSG00000022514	missense	V/A	377	Il1rap	ENSMUST00000096129.8:c.1130T>C	ENSMUSP00000093843.2:p.Val377Ala	H-2-Kb	8	10	2	VAYHVYWL	VVYHVYWL	NetMHCpan	53.5	80.4	1.503	221	0.335	75.342	79.619	1.057	212.53	160.46	80.4	53.5	66.48749949	65.42443789	78.83879904	85.25895396	M3_p20	0.442857143	0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.338	221	0	0	NA	16qB2	chr16-4630421-97886207	3	2	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr15	65857540	65857540	A	C	ENSMUST00000015146.15	1	ENSMUSG00000015002	missense	S/R	670	Efr3a	ENSMUST00000015146.15:c.2008A>C	ENSMUSP00000015146.9:p.Ser670Arg	H-2-Kb	8	11	1	RGYSVERL	SGYSVERL	SMM	216.641	102.74	0.474	132	0.212	252.168	110.215	0.437	79.46	271.13	141	423.4	102.7401038	216.6406749	117.6901185	233.2061504	M3_p20	-0.357142857	-0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.221	132	0	0	NA	15qD1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	0.97860258	sgMsh2	cell line
chr15	60917930	60917930	A	G	ENSMUST00000096418.4	1	ENSMUSG00000022347	missense	Y/H	490	A1bg	ENSMUST00000096418.4:c.1468T>C	ENSMUSP00000094151.3:p.Tyr490His	H-2-Kb	8	7	5	YSCRHTAL	YSCRYTAL	SMM	116.343	30.043	0.258	96	0.24	198.555	28.753	0.145	20.01	278.33	51.5	481.2	30.04277187	116.3429308	27.46249558	118.7790917	M3_p20	-0.157142857	-0.157142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.238	96	0	0	NA	15qD1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr15	76185668	76185668	G	A	ENSMUST00000073418.12	5	ENSMUSG00000022565	missense	R/W	1153	Plec	ENSMUST00000073418.12:c.3457C>T	ENSMUSP00000073124.6:p.Arg1153Trp	H-2-Kb	8	7	5	VHRLWLPL	VHRLRLPL	SMM	145.794	747.722	5.129	49	0.265	184.366	805.542	4.369	756.53	292.75	951.2	214.3	747.7217263	145.794117	854.5549615	154.4329616	M3_p20	0.171428571	0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe	3	0.276	49	0	0	NA	15qD3	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr16	3592523	3592523	GA	G	ENSMUST00000216259.1	5	ENSMUSG00000051003	FS	G/X	42	Olfr161	ENSMUST00000216259.1:c.128del	ENSMUSP00000150825.1:p.Asn43ThrfsTer46	H-2-Kb	8	47	0	LSLRYWPF	NA	NetMHCpan	130.4	NA	NA	190	0.258	210.41	NA	NA	NA	465.62	NA	130.4	NA	248.7367755	NA	172.0838049	M3_p20	-0.357142857	-0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.26	190	0	0	NA	16qA1	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	sgMsh2	cell line
chr16	32961669	32961669	A	G	ENSMUST00000135193.8	5	ENSMUSG00000022801	missense	Y/C	271	Lrch3	ENSMUST00000135193.8:c.812A>G	ENSMUSP00000130708.1:p.Tyr271Cys	H-2-Kb	8	5	7	KIHIFKCL	KIHIFKYL	SMMPMBEC	256.886	92.628	0.361	188	0.319	319.381	76.184	0.239	59.74	598.73	59.4	324.9	102.9769442	313.8629122	92.62751223	256.8857419	M3_p20	1.571428571	1.571428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.31	188	0	0	NA	16qB3	chr16-4630421-97886207	3	2	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr16	21984223	21984223	C	A	ENSMUST00000060673.7	1	ENSMUSG00000044626	missense	S/I	32	Liph	ENSMUST00000060673.7:c.95G>T	ENSMUSP00000062310.6:p.Ser32Ile	H-2-Kb	8	7	5	LSFHIAVV	LSFHSAVV	NetMHCpan	163.4	278.9	1.707	161	0.261	421.954	297.901	0.706	664.56	793.74	278.9	163.4	309.5565516	513.7360001	286.246378	330.1718172	M3_p20	1.928571429	1.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.276	161	0	0	NA	16qB1	chr16-4630421-97886207	3	2	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr15	100209633	100209633	G	A	ENSMUST00000100203.9	1	ENSMUSG00000023026	missense	E/K	1409	Dip2b	ENSMUST00000100203.9:c.4225G>A	ENSMUSP00000097777.3:p.Glu1409Lys	H-2-Kb	8	6	6	TIYDSKTL	TIYDSETL	SMM	364.536	448.477	1.23	162	0.216	441.989	542.053	1.226	1188.74	1110.38	488.8	444.7	448.476819	364.5356443	595.3056439	439.2785529	M3_p20	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	162	0	0	NA	15qF1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr16	19566134	19566134	T	C	ENSMUST00000215476.1	5	ENSMUSG00000068535	missense	M/V	250	Olfr169	ENSMUST00000215476.1:c.748A>G	ENSMUSP00000150917.1:p.Met250Val	H-2-Kb	9	8	4	VVIVYYGPF	VVIMYYGPF	NetMHC	15.9	15.15	0.953	244	0.082	20.74	22.059	1.064	15.15	15.9	24	30.7	23.8292295	20.23531643	20.28850284	21.24467052	M3_p20	0.985714286	2.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.093	244	0	0	NA	16qA3	chr16-4630421-97886207	3	2	1	0.91	4.029540036	NA	1	0.411810136	sgMsh2	cell line
chr16	3592590	3592590	A	G	ENSMUST00000216259.1	5	ENSMUSG00000051003	missense	S/G	65	Olfr161	ENSMUST00000216259.1:c.193A>G	ENSMUSP00000150825.1:p.Ser65Gly	H-2-Kb	9	5	7	PMYFFLGNL	PMYFFLSNL	SMM	22.862	15.35	0.671	258	0.244	43.133	26.875	0.623	34.5	54.11	28.5	71.6	15.35005727	22.86177783	25.24933823	32.15511003	M3_p20	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.259	258	0	0	NA	16qA1	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	sgMsh2	cell line
chr15	76593618	76593618	CG	C	ENSMUST00000162503.7	5	ENSMUSG00000022550	FS	R/X	177	Adck5	ENSMUST00000162503.7:c.533del	ENSMUSP00000125055.1:p.Gly178AlafsTer48	H-2-Kb	9	49	0	TVPSYTMAL	NA	NetMHC	56.16	NA	NA	94	0.138	224.767	NA	NA	NA	56.16	NA	87.2	NA	362.3347605	NA	502.6318444	M3_p20	0.442857143	0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.154	94	0	0	NA	15qD3	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	0.68192216	sgMsh2	cell line
chr16	13835196	13835196	T	G	ENSMUST00000023362.14	1	ENSMUSG00000022681	missense	L/W	272	Ntan1	ENSMUST00000023362.14:c.815T>G	ENSMUSP00000023362.8:p.Leu272Trp	H-2-Kb	9	9	3	STWMFLKKF	STLMFLKKF	NetMHC	150.06	189.84	1.265	35	0.2	255.117	324.22	1.271	189.84	150.06	238	216.3	451.9704069	352.4601324	410.4403034	293.9341186	M3_p20	0.371428571	0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.222	35	0	0	NA	16qA1	chr16-4630421-97886207	3	2	1	0.91	4.029540036	NA	1	0.983030646	sgMsh2	cell line
chr15	83852059	83852059	T	C	ENSMUST00000109470.7	1	ENSMUSG00000041708	missense	W/R	218	Mpped1	ENSMUST00000109470.7:c.652T>C	ENSMUSP00000105096.1:p.Trp218Arg	H-2-Kb	9	7	5	WFYGRGFNL	WFYGWGFNL	SMMPMBEC	271.175	367.494	1.355	125	0.272	288.061	378.347	1.313	389.2	290.29	470	406.9	353.2726369	285.8314418	367.4937861	271.1752193	M3_p20	-0.5	-0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.26	125	0	0	NA	15qE1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr15	76185668	76185668	G	A	ENSMUST00000073418.12	5	ENSMUSG00000022565	missense	R/W	1153	Plec	ENSMUST00000073418.12:c.3457C>T	ENSMUSP00000073124.6:p.Arg1153Trp	H-2-Kb	9	6	6	TVHRLWLPL	TVHRLRLPL	NetMHCpan	140.4	473.4	3.372	49	0.265	302.662	666.334	2.202	585.79	318.08	473.4	140.4	790.8789199	332.7438214	746.8785726	287.2433612	M3_p20	0.171428571	0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe	3	0.276	49	0	0	NA	15qD3	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr16	3592523	3592523	GA	G	ENSMUST00000216259.1	5	ENSMUSG00000051003	FS	G/X	42	Olfr161	ENSMUST00000216259.1:c.128del	ENSMUSP00000150825.1:p.Asn43ThrfsTer46	H-2-Kb	9	39	0	WMYASPPPL	NA	NetMHCpan	187.9	NA	NA	190	0.258	209.738	NA	NA	NA	330.1	NA	187.9	NA	192.357888	NA	227.1171867	M3_p20	-0.185714286	-0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.26	190	0	0	NA	16qA1	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	sgMsh2	cell line
chr16	34198458	34198458	CG	C	ENSMUST00000114960.8	1	ENSMUSG00000061751	FS	P/X	1311	Kalrn	ENSMUST00000114960.8:c.3933del	ENSMUSP00000110611.2:p.Gly1312AlafsTer65	H-2-Kb	9	58	0	TNFRCMSPT	NA	NetMHCpan	449.7	NA	NA	175	0.309	478.174	NA	NA	NA	503.19	NA	449.7	NA	642.8505207	NA	453.1583638	M3_p20	-0.057142857	-0.057142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.302	175	0	0	NA	16qB3	chr16-4630421-97886207	3	2	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr16	26710559	26710559	T	C	ENSMUST00000096129.8	1	ENSMUSG00000022514	missense	V/A	377	Il1rap	ENSMUST00000096129.8:c.1130T>C	ENSMUSP00000093843.2:p.Val377Ala	H-2-Kb	9	11	1	AYHVYWLEM	VYHVYWLEM	SMM	295.196	99.337	0.337	221	0.335	436.585	174.823	0.4	323.85	709.73	234.5	555.3	99.3367621	295.1956816	115.1463034	317.8703353	M3_p20	0.142857143	0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.338	221	0	0	NA	16qB2	chr16-4630421-97886207	3	2	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr17	20502730	20502730	CT	C	ENSMUST00000233982.1	NA	ENSMUSG00000043537	FS	T/X	144	Vmn1r225	ENSMUST00000233982.1:c.438del	ENSMUSP00000156633.1:p.Pro147LeufsTer2	H-2-Db	9	6	9	CLLVNTFFL	CLLVNTFFP	SMM	137.918	1635.385	11.858	201	0.209	164.524	6631.077	40.305	11145.89	161.72	13241.5	431.4	1635.384962	137.9176981	2116.264759	167.3285316	M3_p20	1.885714286	1.885714286	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.212	201	0	0	NA	17qA3.2	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.938749986	sgMsh2	cell line
chr17	14670751	14670751	A	G	ENSMUST00000170872.2	1	ENSMUSG00000023885	missense	V/A	1039	Thbs2	ENSMUST00000170872.2:c.3116T>C	ENSMUSP00000128308.1:p.Val1039Ala	H-2-Kb	8	5	7	SSSRFYAV	SSSRFYVV	NetMHC	13.14	84.29	6.415	142	0.218	71.128	166.876	2.346	84.29	13.14	132.5	56.8	201.251905	85.45549615	244.1968177	108.5775406	M3_p20	0.2	0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.216	142	0	0	NA	17qA2	chr17-3079405-14988397	5	3	2	0.91	4.029540036	NA	1	0.95646225	sgMsh2	cell line
chr17	38148878	38148878	T	C	ENSMUST00000215078.2	5	ENSMUSG00000063240	missense	C/R	97	Olfr133	ENSMUST00000215078.2:c.289T>C	ENSMUSP00000149451.2:p.Cys97Arg	H-2-Kb	8	6	6	ISYMRRAV	ISYMRCAV	NetMHC	16.45	13.51	0.821	520	0.217	49.956	47.314	0.947	13.51	16.45	20.2	32.5	86.64430052	79.2027024	74.42862571	67.41243274	M3_p20	-0.457142857	-0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.228	520	0	0	NA	17qB1	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr17	14670751	14670751	A	G	ENSMUST00000170872.2	1	ENSMUSG00000023885	missense	V/A	1039	Thbs2	ENSMUST00000170872.2:c.3116T>C	ENSMUSP00000128308.1:p.Val1039Ala	H-2-Kb	8	6	6	SSRFYAVM	SSRFYVVM	NetMHCpan	22.1	48.2	2.181	142	0.218	35.479	153.102	4.315	166.33	22.57	48.2	22.1	139.8749679	48.38825938	172.8781076	59.94321055	M3_p20	0.585714286	0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.216	142	0	0	NA	17qA2	chr17-3079405-14988397	5	3	2	0.91	4.029540036	NA	1	0.95646225	sgMsh2	cell line
chr17	20374957	20374957	G	T	ENSMUST00000042090.7	5	ENSMUSG00000056910	missense	A/S	591	Vmn2r107	ENSMUST00000042090.7:c.1771G>T	ENSMUSP00000048706.6:p.Ala591Ser	H-2-Kb	8	10	2	ISLCLSAL	IALCLSAL	NetMHC	25.01	68.52	2.74	833	0.025	47.092	107.494	2.283	68.52	25.01	104.9	53	110.0880046	42.92793522	135.4378341	51.25544401	M3_p20	2.014285714	2.114285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.029	833	0	0	NA	17qA3.2	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.128413913	sgMsh2	cell line
chr16	59201814	59201814	G	T	ENSMUST00000208244.2	2	ENSMUSG00000052537	missense	A/D	204	Olfr198	ENSMUST00000208244.2:c.611C>A	ENSMUSP00000146813.2:p.Ala204Asp	H-2-Kb	8	5	7	LVLIFSDL	LVLIFSAL	NetMHCpan	42.8	18.4	0.43	186	0.086	82.245	26.971	0.328	11.93	47.07	18.4	42.8	37.56124682	135.4378341	35.54184757	117.4194387	M3_p20	2.114285714	2.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.09	186	0	0	NA	16qC1.3	chr16-4630421-97886207	3	2	1	0.91	4.029540036	NA	1	0.398525938	sgMsh2	cell line
chr17	37590059	37590059	A	G	ENSMUST00000216249.1	5	ENSMUSG00000062629	missense	M/T	98	Olfr114	ENSMUST00000216249.1:c.293T>C	ENSMUSP00000149735.1:p.Met98Thr	H-2-Kb	8	5	7	ISYGQCTL	ISYGQCML	SMM	46.21	40.714	0.881	1103	0.203	49.885	43.907	0.88	36.99	48.97	47.1	50.8	40.71364636	46.21042896	60.63732022	68.0361923	M3_p20	-0.057142857	0.042857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.208	1103	0	0	NA	17qB1	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.921037723	sgMsh2	cell line
chr17	37382656	37382656	T	C	ENSMUST00000215518.1	5	ENSMUSG00000094884	missense	Y/H	30	Olfr105-ps	ENSMUST00000215518.1:c.88T>C	ENSMUSP00000154753.1:p.Tyr30His	H-2-Kb	8	8	4	LAMHFINV	LAMYFINV	NetMHCpan	38.2	31.6	0.827	665	0.223	115.449	106.2	0.92	39.92	67.69	31.6	38.2	226.3288934	224.7708563	172.480499	163.2074578	M3_p20	1.214285714	1.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.223	665	0	0	NA	17qB1	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.987458712	sgMsh2	cell line
chr17	28691801	28691801	C	A	ENSMUST00000004990.13	1	ENSMUSG00000053436	missense	P/H	21	Mapk14	ENSMUST00000004990.13:c.62C>A	ENSMUSP00000004990.6:p.Pro21His	H-2-Kb	8	10	2	VHERYQNL	VPERYQNL	SMMPMBEC	69.142	86.445	1.25	26	0.731	92.674	285.683	3.083	483.92	114.92	1111.1	352.6	87.44601036	70.42713151	86.44502416	69.1416915	M3_p20	-2.242857143	-2.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.667	26	0	0	NA	17qA3.3	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	3	1	sgMsh2	cell line
chr17	22146436	22146436	A	G	ENSMUST00000080249.5	1	ENSMUSG00000063383	missense	C/R	86	Zfp947	ENSMUST00000080249.5:c.256T>C	ENSMUSP00000079137.5:p.Cys86Arg	H-2-Kb	8	7	5	KSYERHEL	KSYECHEL	NetMHCpan	80.7	110	1.363	375	0.184	257.706	143.357	0.556	190.09	201.55	110	80.7	139.2323008	313.8629122	147.4823333	342.5626424	M3_p20	-1.857142857	-1.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.183	375	0	0	NA	17qA3.3	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.810336073	sgMsh2	cell line
chr17	20502847	20502847	A	AT	ENSMUST00000233982.1	NA	ENSMUSG00000043537	FS	-/X	183-184	Vmn1r225	ENSMUST00000233982.1:c.553dup	ENSMUSP00000156633.1:p.Trp185LeufsTer5	H-2-Kb	8	8	6	VYIAFLGI	VYIAFWVF	NetMHCpan	132.8	2122.5	15.983	297	0.279	315.408	2062.886	6.54	2153.98	265.44	2122.5	132.8	2003.272365	381.7156799	1777.215122	365.3759857	M3_p20	2.242857143	2.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.269	297	0	0	NA	17qA3.2	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr17	40228805	40228805	A	G	ENSMUST00000026499.5	1	ENSMUSG00000025433	missense	V/A	167	Crisp3	ENSMUST00000026499.5:c.500T>C	ENSMUSP00000026499.5:p.Val167Ala	H-2-Kb	8	10	2	YACRYCPV	YVCRYCPV	SMMPMBEC	174.478	161.339	0.925	725	0.199	239.579	312.449	1.304	429.13	286.52	494.4	303	195.7672319	192.6371303	161.3392375	174.4777291	M3_p20	0.514285714	0.514285714	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.196	725	0	0	NA	17qB2	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.867900931	sgMsh2	cell line
chr16	58915901	58915901	GA	G	ENSMUST00000171656.2	2	ENSMUSG00000090629	FS	S/X	247	Olfr180	ENSMUST00000171656.2:c.739del	ENSMUSP00000128358.1:p.Ser247LeufsTer31	H-2-Kb	8	31	0	KTYQWLYF	NA	NetMHCpan	200.7	NA	NA	189	0.354	382.912	NA	NA	NA	489.31	NA	200.7	NA	445.3895263	NA	320.4350395	M3_p20	-0.157142857	-0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.324	189	0	0	NA	16qC1.2	chr16-4630421-97886207	3	2	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr17	35066160	35066160	A	G	ENSMUST00000174190.1	1	ENSMUSG00000073414	missense	V/A	4	Mpig6b	ENSMUST00000174190.1:c.11T>C	ENSMUSP00000133377.1:p.Val4Ala	H-2-Kb	8	1	4	MALALPLL	MALVLPLL	NetMHCpan	363.4	251.3	0.692	157	0.268	457.447	393.538	0.86	404.48	539.39	251.3	363.4	382.5956254	398.7860888	438.2682402	516.1072977	M3_p20	2.457142857	2.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.275	157	0	0	NA	17qB1	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr16	58915901	58915901	GA	G	ENSMUST00000171656.2	2	ENSMUSG00000090629	FS	S/X	247	Olfr180	ENSMUST00000171656.2:c.739del	ENSMUSP00000128358.1:p.Ser247LeufsTer31	H-2-Kb	8	29	0	VIKTYQWL	NA	SMM	154.433	NA	NA	189	0.354	282.366	NA	NA	NA	556.53	NA	386.6	NA	154.4329616	NA	178.1312026	M3_p20	-0.285714286	-0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.324	189	0	0	NA	16qC1.2	chr16-4630421-97886207	3	2	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr17	37751964	37751964	A	G	ENSMUST00000174675.3	5	ENSMUSG00000060017	missense	I/V	37	Olfr121	ENSMUST00000174675.3:c.109A>G	ENSMUSP00000133865.3:p.Ile37Val	H-2-Kb	8	4	8	CFLLFTLV	CFLLFTLI	SMM	253.945	461.041	1.816	870	0.194	479.578	724.227	1.51	850.4	581.81	2002	2533.9	461.0414792	253.9451951	598.0534499	377.3462166	M3_p20	2.928571429	2.928571429	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.191	870	0	0	NA	17qB1	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.845760601	sgMsh2	cell line
chr17	30761096	30761096	GT	G	ENSMUST00000236140.1	NA	ENSMUSG00000033826	FS	F/X	3035	Dnah8	ENSMUST00000236140.1:c.9108del	ENSMUSP00000157469.1:p.Phe3036LeufsTer5	H-2-Kb	8	5	8	TSLDLVFL	TSLDLVFF	SMM	245.89	3997.054	16.255	163	0.19	452.067	3837.777	8.489	5159.69	706.65	3678.5	633.9	3997.053856	245.8895091	3394.220093	270.2340064	M3_p20	2.014285714	2.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.179	163	0	0	NA	17qA3.3	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.792623809	sgMsh2	cell line
chr17	20047997	20047997	T	C	ENSMUST00000168050.2	5	ENSMUSG00000090315	missense	Y/C	70	Vmn2r104	ENSMUST00000168050.2:c.209A>G	ENSMUSP00000129895.1:p.Tyr70Cys	H-2-Kb	8	5	7	STKPYVCL	STKPYVYL	SMM	396.954	130.239	0.328	151	0.331	436.567	138.016	0.316	157.25	1358.6	72.8	468.8	130.2386842	396.9538331	145.794117	404.3337559	M3_p20	0.428571429	0.428571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.342	151	0	0	NA	17qA3.2	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr17	14670751	14670751	A	G	ENSMUST00000170872.2	1	ENSMUSG00000023885	missense	V/A	1039	Thbs2	ENSMUST00000170872.2:c.3116T>C	ENSMUSP00000128308.1:p.Val1039Ala	H-2-Kb	9	5	7	SSSRFYAVM	SSSRFYVVM	NetMHC	10.18	60.31	5.924	142	0.218	68.885	112.801	1.638	60.31	10.18	30.7	15.8	184.9737069	128.2655418	165.2913018	121.9691508	M3_p20	0.585714286	0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.216	142	0	0	NA	17qA2	chr17-3079405-14988397	5	3	2	0.91	4.029540036	NA	1	0.95646225	sgMsh2	cell line
chr17	20502847	20502847	A	AT	ENSMUST00000233982.1	NA	ENSMUSG00000043537	FS	-/X	183-184	Vmn1r225	ENSMUST00000233982.1:c.553dup	ENSMUSP00000156633.1:p.Trp185LeufsTer5	H-2-Kb	9	7	7	TVYIAFLGI	TVYIAFWVF	NetMHCpan	60.4	1563.2	25.881	297	0.279	124.387	895.217	7.197	1484.16	70.08	1563.2	60.4	306.2739079	178.6940122	268.0711022	196.4490803	M3_p20	2.242857143	2.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.269	297	0	0	NA	17qA3.2	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr17	20030036	20030036	A	G	ENSMUST00000168050.2	5	ENSMUSG00000090315	missense	F/L	658	Vmn2r104	ENSMUST00000168050.2:c.1972T>C	ENSMUSP00000129895.1:p.Phe658Leu	H-2-Kb	9	11	1	LAVAFTMAL	FAVAFTMAL	NetMHC	89.34	100.18	1.121	1044	0.204	263.25	298.368	1.133	100.18	89.34	166.1	107.6	430.63567	418.8996524	526.3201534	458.4056903	M3_p20	2.228571429	2.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2	2	0.207	1044	0	0	NA	17qA3.2	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.916609657	sgMsh2	cell line
chr17	18243723	18243723	T	G	ENSMUST00000172190.3	5	ENSMUSG00000090417	missense	E/D	768	Vmn2r94	ENSMUST00000172190.3:c.2304A>C	ENSMUSP00000126386.2:p.Glu768Asp	H-2-Kb	9	8	4	VAMDVFSIL	VAMEVFSIL	NetMHCpan	40.2	29	0.721	599	0.314	143.187	119.931	0.838	91.23	122.65	29	40.2	148.6312054	163.7231154	171.4944225	179.1636906	M3_p20	1.842857143	1.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.314	599	0	0	NA	17qA3.2	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr17	37751964	37751964	A	G	ENSMUST00000174675.3	5	ENSMUSG00000060017	missense	I/V	37	Olfr121	ENSMUST00000174675.3:c.109A>G	ENSMUSP00000133865.3:p.Ile37Val	H-2-Kb	9	11	1	VLLMFLVSL	ILLMFLVSL	NetMHC	127.87	166.59	1.303	870	0.194	185.568	235.147	1.267	166.59	127.87	243.7	206.3	294.5167504	200.0368468	226.5948317	171.0999962	M3_p20	2.785714286	3.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.191	870	0	0	NA	17qB1	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.845760601	sgMsh2	cell line
chr17	40783774	40783774	A	G	ENSMUST00000232709.1	NA	ENSMUSG00000023930	missense	Y/H	137	Crisp2	ENSMUST00000232709.1:c.409T>C	ENSMUSP00000156411.1:p.Tyr137His	H-2-Kb	9	6	6	SAVGHHTQL	SAVGHYTQL	NetMHC	129.64	22.75	0.175	479	0.194	201.5	45.866	0.228	22.75	129.64	39.1	238.6	67.15989369	235.0228021	52.63201534	167.9770694	M3_p20	-0.428571429	-0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.195	479	0	0	NA	17qB2	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.863472865	sgMsh2	cell line
chr17	37382656	37382656	T	C	ENSMUST00000215518.1	5	ENSMUSG00000094884	missense	Y/H	30	Olfr105-ps	ENSMUST00000215518.1:c.88T>C	ENSMUSP00000154753.1:p.Tyr30His	H-2-Kb	9	7	5	VLAMHFINV	VLAMYFINV	NetMHCpan	171.6	152.5	0.889	665	0.223	293.012	230.854	0.788	138.03	197.65	152.5	171.6	338.9299909	422.7756832	309.2074862	388.3738676	M3_p20	1.214285714	2.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.223	665	0	0	NA	17qB1	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.987458712	sgMsh2	cell line
chr17	22602492	22602492	A	G	ENSMUST00000097381.4	1	ENSMUSG00000094921	missense	T/A	149	Vmn2r112	ENSMUST00000097381.4:c.445A>G	ENSMUSP00000094994.3:p.Thr149Ala	H-2-Kb	9	10	2	TAVTLYTIL	TTVTLYTIL	NetMHCpan	171.1	159.6	0.933	312	0.115	247.205	307.665	1.245	316.62	263.07	159.6	171.1	382.0410236	277.4022632	298.7101638	231.3396105	M3_p20	1.942857143	1.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.118	312	0	0	NA	17qA3.3	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.522511785	sgMsh2	cell line
chr17	37923763	37923763	C	A	ENSMUST00000216440.1	5	ENSMUSG00000059030	missense	L/I	66	Olfr128	ENSMUST00000216440.1:c.196C>A	ENSMUSP00000151065.1:p.Leu66Ile	H-2-Kb	9	3	9	PMYYFLKHI	PMYYFLKHL	SMM	64.433	25.948	0.403	1162	0.298	185.842	62.493	0.336	80.88	269.06	80.6	413.5	25.9483651	64.43324442	44.38640791	102.6242509	M3_p20	0.2	0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.287	1162	0	0	NA	17qB1	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr17	19053653	19053653	C	A	ENSMUST00000170424.2	5	ENSMUSG00000096717	missense	S/Y	54	Vmn2r98	ENSMUST00000170424.2:c.161C>A	ENSMUSP00000131261.1:p.Ser54Tyr	H-2-Kb	9	7	5	HTFYYLKKM	HTFYSLKKM	NetMHCpan	162.4	2676.5	16.481	230	0.222	315.655	1812.209	5.741	2171.47	303.78	2676.5	162.4	1432.550696	345.2311699	1452.947761	327.5291816	M3_p20	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.221	230	0	0	NA	17qA3.2	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.97860258	sgMsh2	cell line
chr16	58915901	58915901	GA	G	ENSMUST00000171656.2	2	ENSMUSG00000090629	FS	S/X	247	Olfr180	ENSMUST00000171656.2:c.739del	ENSMUSP00000128358.1:p.Ser247LeufsTer31	H-2-Kb	9	31	0	KTYQWLYFI	NA	NetMHCpan	171.2	NA	NA	189	0.354	384.332	NA	NA	NA	307.23	NA	171.2	NA	461.4344339	NA	521.4948213	M3_p20	0.585714286	0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.324	189	0	0	NA	16qC1.2	chr16-4630421-97886207	3	2	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr17	38148878	38148878	T	C	ENSMUST00000215078.2	5	ENSMUSG00000063240	missense	C/R	97	Olfr133	ENSMUST00000215078.2:c.289T>C	ENSMUSP00000149451.2:p.Cys97Arg	H-2-Kb	9	7	5	SYMRRAVQL	SYMRCAVQL	NetMHC	319.63	753.04	2.356	520	0.217	361.144	905.233	2.507	753.04	319.63	627.1	347.1	1340.01605	482.0698829	1057.426037	375.1889162	M3_p20	-0.114285714	-0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.228	520	0	0	NA	17qB1	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr17	37923763	37923763	C	A	ENSMUST00000216440.1	5	ENSMUSG00000059030	missense	L/I	66	Olfr128	ENSMUST00000216440.1:c.196C>A	ENSMUSP00000151065.1:p.Leu66Ile	H-2-Kb	9	5	7	YYFLKHISI	YYFLKHLSI	NetMHC	361.29	353.59	0.979	1162	0.298	432.287	404.154	0.935	353.59	361.29	367.5	433.8	486.5304206	470.0131405	440.8085403	430.7745129	M3_p20	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.287	1162	0	0	NA	17qB1	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr17	37923763	37923763	C	A	ENSMUST00000216440.1	5	ENSMUSG00000059030	missense	L/I	66	Olfr128	ENSMUST00000216440.1:c.196C>A	ENSMUSP00000151065.1:p.Leu66Ile	H-2-Kb	9	11	1	ISILDLSSL	LSILDLSSL	NetMHCpan	253	1041.9	4.118	1162	0.298	351.412	889.147	2.53	1332.58	393.55	1041.9	253	736.3935909	376.7992242	637.1621954	326.0243217	M3_p20	1.542857143	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.287	1162	0	0	NA	17qB1	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr17	28691801	28691801	C	A	ENSMUST00000004990.13	1	ENSMUSG00000053436	missense	P/H	21	Mapk14	ENSMUST00000004990.13:c.62C>A	ENSMUSP00000004990.6:p.Pro21His	H-2-Kb	9	9	3	EVHERYQNL	EVPERYQNL	SMMPMBEC	314.232	458.406	1.459	26	0.731	372.707	460.452	1.235	397.99	404.92	1133.7	860.4	462.4981501	340.4944207	458.4056903	314.2317036	M3_p20	-2.242857143	-2.185714286	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.667	26	0	0	NA	17qA3.3	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	3	1	sgMsh2	cell line
chr17	32377792	32377792	G	T	ENSMUST00000236409.1	NA	ENSMUSG00000024050	missense	L/I	323	Wiz	ENSMUST00000236409.1:c.967C>A	ENSMUSP00000158082.1:p.Leu323Ile	H-2-Kb	9	3	9	IYFKHKEHI	IYFKHKEHL	SMMPMBEC	335.158	144.961	0.433	129	0.388	468.818	161.055	0.344	213.66	577.21	153.8	519.7	168.310031	417.9362099	144.9606074	335.1583163	M3_p20	-1.485714286	-1.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.367	129	0	0	NA	17qB1	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr17	38148878	38148878	T	C	ENSMUST00000215078.2	5	ENSMUSG00000063240	missense	C/R	97	Olfr133	ENSMUST00000215078.2:c.289T>C	ENSMUSP00000149451.2:p.Cys97Arg	H-2-Kb	9	6	6	ISYMRRAVQ	ISYMRCAVQ	SMMPMBEC	104.292	84.967	0.815	520	0.217	431.473	302.462	0.701	455.95	695.41	737	1490.1	148.9738357	167.5367167	84.96694433	104.2917608	M3_p20	-0.842857143	-0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.228	520	0	0	NA	17qB1	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr17	56632320	56632320	T	G	ENSMUST00000112979.3	1	ENSMUSG00000040828	missense	F/V	50	Catsperd	ENSMUST00000112979.3:c.148T>G	ENSMUSP00000108603.2:p.Phe50Val	H-2-Db	9	5	7	YAFPNTVVL	YAFPNTFVL	NetMHCpan	9.1	7.6	0.835	327	0.156	33.615	30.922	0.92	12.57	10.27	7.6	9.1	49.27424743	62.03260224	49.83907806	56.96000254	M3_p20	1.314285714	1.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.157	327	0	0	NA	17qD	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.695206358	sgMsh2	cell line
chr18	37680939	37680939	G	T	ENSMUST00000192931.1	1	ENSMUSG00000103037	missense	S/I	161	Pcdhgb1	ENSMUST00000192931.1:c.482G>T	ENSMUSP00000141348.1:p.Ser161Ile	H-2-Db	9	3	9	NSLKMYTVI	NSLKMYTVS	NetMHC	158.89	19903.22	125.264	191	0.623	356.594	9153.28	25.669	19903.22	158.89	14990.9	524.3	2996.539453	391.3992598	3315.660076	321.7881152	M3_p20	1.214285714	1.214285714	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.624	191	0	0	NA	18qB3	chr18-5046666-88869177	3	2	1	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr18	37485357	37485357	A	G	ENSMUST00000053856.5	NA	ENSMUSG00000046387	missense	I/V	67	Pcdhb17	ENSMUST00000053856.5:c.199A>G	ENSMUSP00000055072.4:p.Ile67Val	H-2-Db	9	11	1	VSQENKEHL	ISQENKEHL	SMMPMBEC	398.63	514.719	1.291	53	0.302	431.345	566.809	1.314	1558.56	1221.5	373.7	408.1	618.8993121	454.5901278	514.7187632	398.6300187	M3_p20	-2.471428571	-2.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.3	53	0	0	NA	18qB3	chr18-5046666-88869177	3	2	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr18	37421758	37421758	A	G	ENSMUST00000053073.5	NA	ENSMUSG00000051486	missense	N/S	47	Pcdhb11	ENSMUST00000053073.5:c.140A>G	ENSMUSP00000056148.4:p.Asn47Ser	H-2-Kb	8	5	7	SGYLVASV	SGYLVANV	NetMHC	21.45	8.74	0.407	175	0.354	72.422	32.915	0.454	8.74	21.45	35.3	69.9	30.53092764	74.94454029	37.56124682	85.8499408	M3_p20	1.642857143	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.328	175	0	0	NA	18qB3	chr18-5046666-88869177	3	2	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr18	76302457	76302457	G	T	ENSMUST00000168423.8	1	ENSMUSG00000024563	missense	A/S	404	Smad2	ENSMUST00000168423.8:c.1210G>T	ENSMUSP00000130115.1:p.Ala404Ser	H-2-Kb	8	11	1	SVYQLTRM	AVYQLTRM	NetMHC	22.46	53.02	2.361	158	0.354	59.095	101.969	1.726	53.02	22.46	48.4	28.5	168.1666993	89.68916897	150.9176382	90.10315536	M3_p20	-0.014285714	-0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.379	158	0	0	NA	18qE3	chr18-5046666-88869177	3	2	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr18	37357271	37357271	G	T	ENSMUST00000051163.2	NA	ENSMUSG00000045876	missense	Q/H	667	Pcdhb8	ENSMUST00000051163.2:c.2001G>T	ENSMUSP00000054371.1:p.Gln667His	H-2-Kb	8	9	3	FSHPYLPL	FSQPYLPL	NetMHCpan	21	50.5	2.405	423	0.303	35.781	51.174	1.43	40.55	26.3	50.5	21	51.84895408	45.26265239	74.60020141	50.90260401	M3_p20	-0.128571429	-0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.289	423	0	0	NA	18qB3	chr18-5046666-88869177	3	2	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr19	4290661	4290661	T	C	ENSMUST00000088737.10	1	ENSMUSG00000024858	missense	M/V	257	Grk2	ENSMUST00000088737.10:c.769A>G	ENSMUSP00000086114.4:p.Met257Val	H-2-Kb	8	11	1	VSYAFHTP	MSYAFHTP	SMM	26.348	56.2	2.133	205	0.078	43.101	101.595	2.357	223.64	50.66	127.9	54.8	56.20047679	26.3475356	75.29046857	35.54184757	M3_p20	-0.428571429	0.4	FALSE	FALSE	TRUE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.088	205	0	0	NA	19qA	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	sgMsh2	cell line
chr17	80433721	80433721	T	A	ENSMUST00000068714.6	2	ENSMUSG00000024241	missense	Q/L	545	Sos1	ENSMUST00000068714.6:c.1634A>T	ENSMUSP00000067786.5:p.Gln545Leu	H-2-Kb	8	8	4	ISLLYRST	ISLQYRST	NetMHC	76.46	115.51	1.511	115	0.226	118.863	128.993	1.085	115.51	76.46	315.3	141.4	142.4754378	146.8047136	96.10367602	96.32521787	M3_p20	-0.071428571	0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.239	115	0	0	NA	17qE3	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr19	5026399	5026399	T	C	ENSMUST00000236152.1	NA	ENSMUSG00000024891	missense	I/T	105	Slc29a2	ENSMUST00000236152.1:c.314T>C	ENSMUSP00000157780.1:p.Ile105Thr	H-2-Kb	8	10	2	ATLLLFAL	AILLLFAL	NetMHC	111.55	117.4	1.052	148	0.223	156.223	164.211	1.051	117.4	111.55	417.7	157.3	155.1457917	155.1457917	173.2766328	166.241711	M3_p20	2.728571429	2.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	148	0	0	NA	19qA	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	sgMsh2	cell line
chr18	61081937	61081937	T	C	ENSMUST00000025522.10	1	ENSMUSG00000024620	missense	Y/H	1009	Pdgfrb	ENSMUST00000025522.10:c.3025T>C	ENSMUSP00000025522.4:p.Tyr1009His	H-2-Kb	8	7	5	SSVLHTAV	SSVLYTAV	NetMHC	157.61	12.1	0.077	117	0.385	248.021	44.005	0.177	12.1	157.61	29.7	355.2	58.30959165	225.8083514	62.47985313	270.2340064	M3_p20	1.328571429	1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.384	117	0	0	NA	18qE1	chr18-5046666-88869177	3	2	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr17	73816404	73816404	A	G	ENSMUST00000024860.8	1	ENSMUSG00000024065	missense	N/S	134	Ehd3	ENSMUST00000024860.8:c.401A>G	ENSMUSP00000024860.7:p.Asn134Ser	H-2-Kb	8	11	1	SRFVCAQL	NRFVCAQL	SMMPMBEC	111.619	633.49	5.675	100	0.34	186.137	2017.113	10.837	4754.54	224.11	3092.9	572.9	941.3258822	148.1630809	633.4903447	111.6194813	M3_p20	1.014285714	1.014285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.329	100	0	0	NA	17qE2	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr17	84692924	84692924	A	T	ENSMUST00000045714.14	1	ENSMUSG00000024254	missense	Y/F	304	Abcg8	ENSMUST00000045714.14:c.911A>T	ENSMUSP00000035246.8:p.Tyr304Phe	H-2-Kb	8	8	4	MVQFFTSI	MVQYFTSI	NetMHCpan	56	76.4	1.364	119	0.244	405.83	426.687	1.051	326.46	509.78	76.4	56	545.4312289	396.9538331	526.9143181	414.7056956	M3_p20	1.328571429	1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.23	119	0	0	NA	17qE4	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr17	58294347	58294347	GA	G	ENSMUST00000076038.6	2	ENSMUSG00000038048	FS	E/X	830	Cntnap5c	ENSMUST00000076038.6:c.2491del	ENSMUSP00000075416.5:p.Ile831SerfsTer12	H-2-Kb	8	8	5	VFLESLAL	VFLEILGI	SMM	241.402	3449.372	14.289	225	0.156	469.793	3333.027	7.095	3279.64	517.17	1794.2	607.2	3449.371732	241.4015198	3386.413603	422.4156501	M3_p20	1.671428571	1.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.149	225	0	0	NA	17qD	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.65978183	sgMsh2	cell line
chr18	13015915	13015915	T	G	ENSMUST00000041676.2	1	ENSMUSG00000037346	missense	D/E	111	Hrh4	ENSMUST00000041676.2:c.333T>G	ENSMUSP00000041061.2:p.Asp111Glu	H-2-Kb	8	8	4	ISYERYQS	ISYDRYQS	NetMHCpan	245.3	408.1	1.664	578	0.265	406.318	624.792	1.538	1091.95	533.49	408.1	245.3	540.4306853	347.3281635	709.1530907	465.3074435	M3_p20	-2.242857143	-1.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.271	578	0	0	NA	18qA1	chr18-5046666-88869177	3	2	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr18	37355814	37355814	A	G	ENSMUST00000051163.2	NA	ENSMUSG00000045876	missense	T/A	182	Pcdhb8	ENSMUST00000051163.2:c.544A>G	ENSMUSP00000054371.1:p.Thr182Ala	H-2-Kb	8	5	7	LHFHVVAL	LHFHVVTL	SMMPMBEC	402.476	633.49	1.574	105	0.657	420.325	659.284	1.569	1527.68	933.94	394.2	428.8	685.0779666	411.8508816	633.4903447	402.476011	M3_p20	1.485714286	1.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.634	105	0	0	NA	18qB3	chr18-5046666-88869177	3	2	1	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr18	37357271	37357271	G	T	ENSMUST00000051163.2	NA	ENSMUSG00000045876	missense	Q/H	667	Pcdhb8	ENSMUST00000051163.2:c.2001G>T	ENSMUSP00000054371.1:p.Gln667His	H-2-Kb	8	7	5	DGFSHPYL	DGFSQPYL	SMM	241.958	846.72	3.499	423	0.303	491.263	2308.602	4.699	7959.71	1456.94	3296.7	675.1	846.7203545	241.9580078	1320.504848	307.4255792	M3_p20	-0.1	-0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.289	423	0	0	NA	18qB3	chr18-5046666-88869177	3	2	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr18	13015915	13015915	T	G	ENSMUST00000041676.2	1	ENSMUSG00000037346	missense	D/E	111	Hrh4	ENSMUST00000041676.2:c.333T>G	ENSMUSP00000041061.2:p.Asp111Glu	H-2-Kb	9	8	4	ISYERYQSV	ISYDRYQSV	NetMHC	4.58	6.82	1.489	578	0.265	10.587	11.524	1.089	6.82	4.58	7.3	6.1	17.91059444	16.25960534	15.74889183	15.07474589	M3_p20	-1.528571429	-1.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.271	578	0	0	NA	18qA1	chr18-5046666-88869177	3	2	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr17	80433721	80433721	T	A	ENSMUST00000068714.6	2	ENSMUSG00000024241	missense	Q/L	545	Sos1	ENSMUST00000068714.6:c.1634A>T	ENSMUSP00000067786.5:p.Gln545Leu	H-2-Kb	9	8	4	ISLLYRSTL	ISLQYRSTL	NetMHC	9.44	10.14	1.074	115	0.226	45.936	64.304	1.4	10.14	9.44	16.6	11.5	126.2147176	80.37296686	112.0082469	81.70525693	M3_p20	0.585714286	0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.239	115	0	0	NA	17qE3	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr19	4290661	4290661	T	C	ENSMUST00000088737.10	1	ENSMUSG00000024858	missense	M/V	257	Grk2	ENSMUST00000088737.10:c.769A>G	ENSMUSP00000086114.4:p.Met257Val	H-2-Kb	9	11	1	VSYAFHTPD	MSYAFHTPD	SMMPMBEC	46.158	119.468	2.588	205	0.078	51.279	157.215	3.066	193.34	55.34	264.8	139.7	121.0904798	47.21826226	119.4675617	46.15832068	M3_p20	-0.814285714	0.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.088	205	0	0	NA	19qA	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	sgMsh2	cell line
chr17	84692924	84692924	A	T	ENSMUST00000045714.14	1	ENSMUSG00000024254	missense	Y/F	304	Abcg8	ENSMUST00000045714.14:c.911A>T	ENSMUSP00000035246.8:p.Tyr304Phe	H-2-Kb	9	7	5	QMVQFFTSI	QMVQYFTSI	NetMHCpan	38.2	56.7	1.484	119	0.244	110.804	144.177	1.301	109.66	76.36	56.7	38.2	178.6940122	145.2479461	201.0249672	188.9078477	M3_p20	1.328571429	1.328571429	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.23	119	0	0	NA	17qE4	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr17	80216772	80216772	T	C	ENSMUST00000134652.1	3	ENSMUSG00000046196	missense	Y/H	287	Ttc39d	ENSMUST00000134652.1:c.859T>C	ENSMUSP00000123158.1:p.Tyr287His	H-2-Kb	9	8	4	LFYHNYVRV	LFYYNYVRV	NetMHC	102.39	66.55	0.65	443	0.413	111.758	88.353	0.791	66.55	102.39	231.3	294.6	89.55915762	119.7043685	87.14651012	103.8125837	M3_p20	-0.771428571	0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.393	443	0	0	NA	17qE3	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr19	6011343	6011343	G	T	ENSMUST00000025891.9	1	ENSMUSG00000024942	missense	Q/K	182	Capn1	ENSMUST00000025891.9:c.544C>A	ENSMUSP00000025891.8:p.Gln182Lys	H-2-Kb	9	11	1	KGNEFWSAL	QGNEFWSAL	NetMHC	118.09	132.59	1.123	143	0.105	359.595	400.861	1.115	132.59	118.09	393.3	165.7	408.4228203	553.4902819	523.901932	571.8077009	M3_p20	-0.042857143	-0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.113	143	0	0	NA	19qA	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	sgMsh2	cell line
chr18	22920873	22920873	A	G	ENSMUST00000164186.7	5	ENSMUSG00000041923	missense	I/T	194	Nol4	ENSMUST00000164186.7:c.581T>C	ENSMUSP00000130950.1:p.Ile194Thr	H-2-Kb	9	11	1	TTMAYMKHM	ITMAYMKHM	NetMHCpan	67.1	23.3	0.347	182	0.368	276.977	150.303	0.543	53.86	145.4	23.3	67.1	318.5004131	545.8961105	246.7459312	408.5545015	M3_p20	-0.128571429	-0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.356	182	0	0	NA	18qA2	chr18-5046666-88869177	3	2	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr18	37680939	37680939	G	T	ENSMUST00000192931.1	1	ENSMUSG00000103037	missense	S/I	161	Pcdhgb1	ENSMUST00000192931.1:c.482G>T	ENSMUSP00000141348.1:p.Ser161Ile	H-2-Kb	9	10	2	VIPNPHFSL	VSPNPHFSL	NetMHC	211.65	119.37	0.564	191	0.623	410.119	267.215	0.652	119.37	211.65	107.8	235.3	415.0591573	584.9382211	522.696991	774.9077422	M3_p20	-0.585714286	0.228571429	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.624	191	0	0	NA	18qB3	chr18-5046666-88869177	3	2	1	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr17	58294347	58294347	GA	G	ENSMUST00000076038.6	2	ENSMUSG00000038048	FS	E/X	830	Cntnap5c	ENSMUST00000076038.6:c.2491del	ENSMUSP00000075416.5:p.Ile831SerfsTer12	H-2-Kb	9	5	8	LSGVFLESL	LSGVFLEIL	NetMHC	242.37	879.82	3.63	225	0.156	330.164	650.394	1.97	879.82	242.37	1759.5	600.1	372.4860392	325.1696473	420.9688878	335.1583163	M3_p20	1.414285714	1.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.149	225	0	0	NA	17qD	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.65978183	sgMsh2	cell line
chr17	56632320	56632320	T	G	ENSMUST00000112979.3	1	ENSMUSG00000040828	missense	F/V	50	Catsperd	ENSMUST00000112979.3:c.148T>G	ENSMUSP00000108603.2:p.Phe50Val	H-2-Kb	9	3	9	LFYAFPNTV	LFYAFPNTF	NetMHCpan	233	338.6	1.453	327	0.156	281.738	333.442	1.184	338.69	258.61	338.6	233	228.6177783	304.8667072	328.2842143	424.864065	M3_p20	0.242857143	0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.157	327	0	0	NA	17qD	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.695206358	sgMsh2	cell line
chr19	5655735	5655735	A	G	ENSMUST00000071857.12	1	ENSMUSG00000056917	missense	F/L	402	Sipa1	ENSMUST00000071857.12:c.1204T>C	ENSMUSP00000073618.5:p.Phe402Leu	H-2-Kb	9	9	3	IMLHVSTML	IMFHVSTML	NetMHC	302.17	97.65	0.323	694	0.13	319.986	108.953	0.34	97.65	302.17	49.9	302.6	120.2568988	337.3727491	131.2955479	364.1245828	M3_p20	1.285714286	1.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.129	694	0	0	NA	19qA	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	sgMsh2	cell line
chr18	80971684	80971684	CT	C	ENSMUST00000238808.1	NA	ENSMUSG00000024565	FS	S/X	1010	Sall3	ENSMUST00000238808.1:c.3028del	ENSMUSP00000158909.1:p.Ser1010ValfsTer31	H-2-Kb	9	18	0	AAIPRRGRL	NA	SMMPMBEC	325.274	NA	NA	46	0.413	475.802	NA	NA	NA	540.35	NA	758	NA	411.2538721	NA	325.2744865	M3_p20	-1.028571429	-0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.413	46	0	0	NA	18qE3	chr18-5046666-88869177	3	2	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr17	87679899	87679899	G	A	ENSMUST00000024967.13	1	ENSMUSG00000024151	missense	D/N	156	Msh2	ENSMUST00000024967.13:c.466G>A	ENSMUSP00000024967.7:p.Asp156Asn	H-2-Kb	9	10	2	VNGQRHVGV	VDGQRHVGV	SMMPMBEC	285.924	1183.723	4.14	540	0.081	489.72	7481.039	15.276	13020.7	594.75	16443.9	1559.9	1941.377536	384.6892055	1183.722765	285.9235978	M3_p20	-0.514285714	-0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.09	540	0	0	NA	17qE4	chr17-87672302-87723786	13.44029782	10.44029782	3	0.91	4.029540036	NA	1	0.398525938	sgMsh2	cell line
chr2	37414545	37414545	A	G	ENSMUST00000100143.9	5	ENSMUSG00000075376	missense	F/L	68	Rc3h2	ENSMUST00000100143.9:c.202T>C	ENSMUSP00000097721.3:p.Phe68Leu	H-2-Db	9	6	6	VLPVNLALL	VLPVNFALL	NetMHC	230.93	262.08	1.135	126	0.262	339.568	366.605	1.08	262.08	230.93	678	978.4	358.6080216	326.3021986	374.6019209	352.8336521	M3_p20	1.757142857	1.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.269	126	0	0	NA	2qB	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr2	22623830	22623830	A	G	ENSMUST00000028123.3	1	ENSMUSG00000026787	missense	H/R	93	Gad2	ENSMUST00000028123.3:c.278A>G	ENSMUSP00000028123.3:p.His93Arg	H-2-Kb	8	5	7	VNYAFLRA	VNYAFLHA	NetMHC	12.34	11.57	0.938	47	0.319	19.738	24.188	1.225	11.57	12.34	16.7	15	31.67670499	24.47597495	33.47649647	26.4691503	M3_p20	0.128571429	0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.333	47	0	0	NA	2qA3	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr2	32096059	32096059	A	G	ENSMUST00000057423.5	1	ENSMUSG00000051373	missense	N/S	83	Plpp7	ENSMUST00000057423.5:c.248A>G	ENSMUSP00000054337.5:p.Asn83Ser	H-2-Kb	8	6	6	KGIAFSSL	KGIAFNSL	NetMHC	17.64	43.84	2.485	24	0.375	39.051	71.041	1.819	43.84	17.64	52.6	22.8	89.4828896	55.30189331	96.10367602	55.68522772	M3_p20	1.557142857	1.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.381	24	0	0	NA	2qB	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr19	13705156	13705156	A	G	ENSMUST00000216366.1	5	ENSMUSG00000051156	missense	T/A	110	Olfr1491	ENSMUST00000216366.1:c.328A>G	ENSMUSP00000149071.1:p.Thr110Ala	H-2-Kb	8	5	7	QMFFFLAL	QMFFFLTL	NetMHCpan	14.6	11.8	0.808	615	0.167	24.739	38.93	1.574	42.4	28.16	11.8	14.6	35.46010359	21.31768301	51.13755976	32.48927349	M3_p20	2.814285714	2.814285714	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.165	615	0	0	NA	19qA	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.730630886	sgMsh2	cell line
chr2	25493787	25493787	T	C	ENSMUST00000028312.12	1	ENSMUSG00000026943	missense	M/V	24	Lcn12	ENSMUST00000028312.12:c.70A>G	ENSMUSP00000028312.6:p.Met24Val	H-2-Kb	8	11	1	VSQGFPQM	MSQGFPQM	NetMHC	67.96	316.47	4.657	71	0.169	107.588	290.453	2.7	316.47	67.96	277	90.8	265.3016799	124.3769779	303.9065077	143.4630303	M3_p20	-0.728571429	-0.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.19	71	0	0	NA	2qA3	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	1	0.841332535	sgMsh2	cell line
chr19	42767181	42767181	GC	G	ENSMUST00000160455.7	1	ENSMUSG00000025188	FS	G/X	202	Hps1	ENSMUST00000160455.7:c.605del	ENSMUSP00000125662.1:p.Gly202AlafsTer168	H-2-Kb	8	141	0	VAPRPAML	NA	NetMHC	73.94	NA	NA	149	0.087	237.16	NA	NA	NA	73.94	NA	323	NA	200.3272365	NA	273.9933359	M3_p20	0.228571429	0.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.094	149	0	0	NA	19qC3	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.416238202	sgMsh2	cell line
chr19	60543015	60543015	A	G	ENSMUST00000081790.14	1	ENSMUSG00000033417	missense	L/P	272	Cacul1	ENSMUST00000081790.14:c.815T>C	ENSMUSP00000080480.7:p.Leu272Pro	H-2-Kb	8	7	5	HIYSPMPL	HIYSLMPL	NetMHC	102.16	23.14	0.227	551	0.172	175.742	65.577	0.373	23.14	102.16	67.5	269.1	66.02980276	166.241711	65.12383991	185.2422298	M3_p20	0.7	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.171	551	0	0	NA	19qD3	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.757199282	sgMsh2	cell line
chr2	37414545	37414545	A	G	ENSMUST00000100143.9	5	ENSMUSG00000075376	missense	F/L	68	Rc3h2	ENSMUST00000100143.9:c.202T>C	ENSMUSP00000097721.3:p.Phe68Leu	H-2-Kb	8	9	3	VNLALLQL	VNFALLQL	NetMHCpan	83.1	13	0.156	126	0.262	124.295	28.013	0.225	27.86	130.9	13	83.1	28.16696149	117.6901185	33.47649647	144.7904774	M3_p20	1.428571429	1.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.269	126	0	0	NA	2qB	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr19	13861984	13861984	A	G	ENSMUST00000074221.1	NA	ENSMUSG00000056858	missense	S/G	64	Olfr1502	ENSMUST00000074221.1:c.190A>G	ENSMUSP00000073843.1:p.Ser64Gly	H-2-Kb	8	6	6	MYFFLGHL	MYFFLSHL	NetMHCpan	44.5	18.4	0.413	722	0.148	150.3	102.23	0.68	79.22	142.57	18.4	44.5	125.2391179	163.2074578	128.7478543	158.0301673	M3_p20	1.185714286	1.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.149	722	0	0	NA	19qA	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.65978183	sgMsh2	cell line
chr2	37202003	37202003	A	AT	ENSMUST00000218602.1	5	ENSMUSG00000059429	FS	Y/YX	254	Olfr365	ENSMUST00000218602.1:c.762dup	ENSMUSP00000151617.1:p.Gly255TrpfsTer9	H-2-Kb	8	9	4	LFYWEYHL	NA	SMMPMBEC	158.03	NA	NA	515	0.25	180.961	NA	NA	NA	188.31	NA	178.8	NA	183.1217795	NA	158.0301673	M3_p20	-0.514285714	-0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.251	515	0	0	NA	2qB	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr2	37085433	37085433	A	C	ENSMUST00000214969.1	5	ENSMUSG00000075378	missense	M/R	105	Olfr361	ENSMUST00000214969.1:c.314T>G	ENSMUSP00000149234.1:p.Met105Arg	H-2-Kb	8	6	6	QLFSFRTV	QLFSFMTV	NetMHCpan	96.8	97.9	1.011	409	0.286	221.142	175.096	0.792	158.88	206.92	97.9	96.8	191.3110256	235.3639803	246.456343	278.4453695	M3_p20	1.085714286	1.085714286	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.283	409	0	0	NA	2qB	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr2	32578965	32578965	GA	G	ENSMUST00000055304.13	1	ENSMUSG00000046854	FS	K/X	199	Pip5kl1	ENSMUST00000055304.13:c.599del	ENSMUSP00000051282.7:p.Lys200ArgfsTer28	H-2-Kb	8	22	0	STLPAAFL	NA	SMM	136.063	NA	NA	202	0.248	225.072	NA	NA	NA	247.03	NA	312.7	NA	136.0629867	NA	203.114066	M3_p20	1.671428571	1.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.246	202	0	0	NA	2qB	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr19	38400469	38400469	T	A	ENSMUST00000054098.3	1	ENSMUSG00000044026	missense	L/M	75	Slc35g1	ENSMUST00000054098.3:c.223T>A	ENSMUSP00000061282.2:p.Leu75Met	H-2-Kb	8	9	3	LGMFYTVL	LGLFYTVL	NetMHCpan	25.8	40.3	1.562	178	0.242	215.12	141.085	0.656	251.45	252.44	40.3	25.8	145.794117	250.4609364	136.3766443	179.7794304	M3_p20	1.471428571	1.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.241	178	0	0	NA	19qC3	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr19	31920923	31920923	A	G	ENSMUST00000075838.7	1	ENSMUSG00000052595	missense	R/G	236	A1cf	ENSMUST00000075838.7:c.706A>G	ENSMUSP00000075235.5:p.Arg236Gly	H-2-Kb	8	6	6	KILYVGNL	KILYVRNL	NetMHCpan	196.2	215.1	1.096	697	0.152	256.171	227.973	0.89	207.1	254.27	215.1	196.2	240.8463117	258.0714726	299.0473787	299.0473787	M3_p20	1.585714286	1.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.157	697	0	0	NA	19qC1	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.695206358	sgMsh2	cell line
chr2	36996936	36996936	A	AT	ENSMUST00000213218.1	5	ENSMUSG00000055838	FS	N/NX	42	Olfr357	ENSMUST00000213218.1:c.132dup	ENSMUSP00000149727.1:p.Ile45TyrfsTer21	H-2-Kb	8	22	0	FSSPYSNV	NA	SMM	252.197	NA	NA	218	0.174	299.216	NA	NA	NA	255.87	NA	356.4	NA	252.1970487	NA	342.5626424	M3_p20	-0.657142857	-0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.166	218	0	0	NA	2qB	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	1	0.735058952	sgMsh2	cell line
chr2	26935351	26935351	A	G	ENSMUST00000055406.8	1	ENSMUSG00000049897	missense	N/S	10	Stkld1	ENSMUST00000055406.8:c.29A>G	ENSMUSP00000062967.8:p.Asn10Ser	H-2-Kb	8	9	2	VSLVVEEL	VNLVVEEL	NetMHC	298.06	827.1	2.775	106	0.292	351.98	706.185	2.006	827.1	298.06	634.8	446.5	611.9839043	330.9329418	777.5709016	373.0267702	M3_p20	1.171428571	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.286	106	0	0	NA	2qA3	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr2	31912023	31912023	A	T	ENSMUST00000028187.6	1	ENSMUSG00000026840	missense	H/L	481	Lamc3	ENSMUST00000028187.6:c.1442A>T	ENSMUSP00000028187.6:p.His481Leu	H-2-Kb	8	4	8	GTFNLQPL	GTFNLQPH	SMMPMBEC	183.544	7938.528	43.251	101	0.089	232.877	24312.774	104.402	31024.73	345.98	21664.3	241.5	26961.24854	224.2538976	7938.528349	183.5439188	M3_p20	0.157142857	0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.111	101	0	0	NA	2qB	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	1	0.491515323	sgMsh2	cell line
chr2	26983866	26983866	T	A	ENSMUST00000102891.3	1	ENSMUSG00000014852	missense	C/S	376	Adamts13	ENSMUST00000102891.3:c.1126T>A	ENSMUSP00000099955.3:p.Cys376Ser	H-2-Kb	8	10	2	RSRSLAEL	RCRSLAEL	SMM	299.737	3554.185	11.858	45	0.222	354.78	5801.142	16.351	11155.42	377.1	8048.1	1335.6	3554.184757	299.7367541	2810.217928	332.4604589	M3_p20	-0.028571429	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.233	45	0	0	NA	2qA3	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr19	16383254	16383254	G	A	ENSMUST00000025541.5	1	ENSMUSG00000024639	missense	V/M	314	Gnaq	ENSMUST00000025541.5:c.940G>A	ENSMUSP00000025541.5:p.Val314Met	H-2-Kb	8	6	6	ILKMFMDL	ILKMFVDL	NetMHCpan	249.7	319.7	1.28	355	0.228	388.374	474.546	1.222	1460.9	633.96	319.7	249.7	595.3056439	459.9811133	353.7854762	316.7670499	M3_p20	0.971428571	1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.234	355	0	0	NA	19qA	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr2	22623830	22623830	A	G	ENSMUST00000028123.3	1	ENSMUSG00000026787	missense	H/R	93	Gad2	ENSMUST00000028123.3:c.278A>G	ENSMUSP00000028123.3:p.His93Arg	H-2-Kb	9	5	7	VNYAFLRAT	VNYAFLHAT	NetMHCpan	28.3	34.1	1.205	47	0.319	65.522	73.799	1.126	51.19	29.16	34.1	28.3	96.40731774	101.8849414	113.8282345	126.255411	M3_p20	0.528571429	0.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.333	47	0	0	NA	2qA3	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr2	32096059	32096059	A	G	ENSMUST00000057423.5	1	ENSMUSG00000051373	missense	N/S	83	Plpp7	ENSMUST00000057423.5:c.248A>G	ENSMUSP00000054337.5:p.Asn83Ser	H-2-Kb	9	6	6	KGIAFSSLL	KGIAFNSLL	NetMHC	49.45	147.45	2.982	24	0.375	240.453	466.442	1.94	147.45	49.45	132	55.2	785.4345477	425.7062242	802.1396792	611.2938126	M3_p20	2.157142857	2.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.381	24	0	0	NA	2qB	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr19	13861984	13861984	A	G	ENSMUST00000074221.1	NA	ENSMUSG00000056858	missense	S/G	64	Olfr1502	ENSMUST00000074221.1:c.190A>G	ENSMUSP00000073843.1:p.Ser64Gly	H-2-Kb	9	5	7	PMYFFLGHL	PMYFFLSHL	SMM	20.47	13.744	0.671	722	0.148	50.42	27.523	0.546	44.85	72.51	32.8	81.5	13.74390042	20.46963035	22.24590099	28.33022345	M3_p20	1.185714286	1.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.149	722	0	0	NA	19qA	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.65978183	sgMsh2	cell line
chr19	13705156	13705156	A	G	ENSMUST00000216366.1	5	ENSMUSG00000051156	missense	T/A	110	Olfr1491	ENSMUST00000216366.1:c.328A>G	ENSMUSP00000149071.1:p.Thr110Ala	H-2-Kb	9	4	8	TQMFFFLAL	TQMFFFLTL	NetMHCpan	21.4	17.7	0.827	615	0.167	96.695	109.446	1.132	88.8	72.54	17.7	21.4	134.9304597	127.0895963	130.0918231	120.8509309	M3_p20	2.814285714	2.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.165	615	0	0	NA	19qA	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.730630886	sgMsh2	cell line
chr2	36996936	36996936	A	AT	ENSMUST00000213218.1	5	ENSMUSG00000055838	FS	N/NX	42	Olfr357	ENSMUST00000213218.1:c.132dup	ENSMUSP00000149727.1:p.Ile45TyrfsTer21	H-2-Kb	9	12	3	FFYRHTYHL	NA	NetMHCpan	72.3	NA	NA	218	0.174	94.673	NA	NA	NA	75.03	NA	72.3	NA	114.3167845	NA	156.0450512	M3_p20	-1.485714286	-0.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.166	218	0	0	NA	2qB	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	1	0.735058952	sgMsh2	cell line
chr2	37202003	37202003	A	AT	ENSMUST00000218602.1	5	ENSMUSG00000059429	FS	Y/YX	254	Olfr365	ENSMUST00000218602.1:c.762dup	ENSMUSP00000151617.1:p.Gly255TrpfsTer9	H-2-Kb	9	8	5	VLFYWEYHL	NA	NetMHCpan	45.2	NA	NA	515	0.25	95.931	NA	NA	NA	82.69	NA	45.2	NA	109.1716816	NA	130.6922997	M3_p20	-0.514285714	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.251	515	0	0	NA	2qB	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr19	31920923	31920923	A	G	ENSMUST00000075838.7	1	ENSMUSG00000052595	missense	R/G	236	A1cf	ENSMUST00000075838.7:c.706A>G	ENSMUSP00000075235.5:p.Arg236Gly	H-2-Kb	9	5	7	VKILYVGNL	VKILYVRNL	NetMHC	101.13	84.44	0.835	697	0.152	234.876	305.351	1.3	84.44	101.13	120.8	136.9	489.9028884	391.8411118	501.4758232	332.8511027	M3_p20	1.585714286	1.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.157	697	0	0	NA	19qC1	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.695206358	sgMsh2	cell line
chr19	13454083	13454083	A	G	ENSMUST00000096201.3	5	ENSMUSG00000095189	missense	C/R	145	Olfr1472	ENSMUST00000096201.3:c.433T>C	ENSMUSP00000093915.3:p.Cys145Arg	H-2-Kb	9	9	3	VTRCYMCGI	VTCCYMCGI	NetMHC	188.33	441.89	2.346	771	0.139	299.238	609.711	2.038	441.89	188.33	758.9	198.3	783.6280984	422.7756832	460.5215948	400.1750427	M3_p20	0.742857143	0.742857143	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.136	771	0	0	NA	19qA	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.602216972	sgMsh2	cell line
chr2	32096059	32096059	A	G	ENSMUST00000057423.5	1	ENSMUSG00000051373	missense	N/S	83	Plpp7	ENSMUST00000057423.5:c.248A>G	ENSMUSP00000054337.5:p.Asn83Ser	H-2-Kb	9	8	4	IAFSSLLAI	IAFNSLLAI	NetMHCpan	126.5	133.2	1.053	24	0.375	230.074	260.76	1.133	180.13	192.78	133.2	126.5	380.2857045	267.3683525	341.3893746	329.0409876	M3_p20	2.157142857	2.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.381	24	0	0	NA	2qB	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr2	22623830	22623830	A	G	ENSMUST00000028123.3	1	ENSMUSG00000026787	missense	H/R	93	Gad2	ENSMUST00000028123.3:c.278A>G	ENSMUSP00000028123.3:p.His93Arg	H-2-Kb	9	7	5	YAFLRATDL	YAFLHATDL	NetMHCpan	97.5	68.1	0.698	47	0.319	223.705	223.19	0.998	179.54	204.61	68.1	97.5	272.3391013	263.0934282	266.8394274	242.8007366	M3_p20	0.5	0.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.333	47	0	0	NA	2qA3	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr19	34495079	34495079	T	A	ENSMUST00000049572.14	1	ENSMUSG00000024781	missense	N/I	314	Lipa	ENSMUST00000049572.14:c.941A>T	ENSMUSP00000053270.8:p.Asn314Ile	H-2-Kb	9	11	1	IYFHYNQSF	NYFHYNQSF	SMMPMBEC	178.752	1092.069	6.109	86	0.326	214.115	1375.179	6.423	1567	205.33	1496.9	262.3	1253.458616	222.8999649	1092.068801	178.7516256	M3_p20	-0.957142857	-0.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.314	86	0	0	NA	19qC1	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr2	37085433	37085433	A	C	ENSMUST00000214969.1	5	ENSMUSG00000075378	missense	M/R	105	Olfr361	ENSMUST00000214969.1:c.314T>G	ENSMUSP00000149234.1:p.Met105Arg	H-2-Kb	9	8	4	FSFRTVGSM	FSFMTVGSM	NetMHC	223	207.93	0.932	409	0.286	464.706	385.207	0.829	207.93	223	201	246.9	562.4837755	682.5115418	563.9622051	740.0311486	M3_p20	0.357142857	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.283	409	0	0	NA	2qB	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr19	60543015	60543015	A	G	ENSMUST00000081790.14	1	ENSMUSG00000033417	missense	L/P	272	Cacul1	ENSMUST00000081790.14:c.815T>C	ENSMUSP00000080480.7:p.Leu272Pro	H-2-Kb	9	7	5	HIYSPMPLL	HIYSLMPLL	SMM	223.929	166.001	0.741	551	0.172	350.975	195.01	0.556	172.52	267.65	217.5	434.3	166.0007308	223.9288243	260.7654204	445.9128626	M3_p20	0.6	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.171	551	0	0	NA	19qD3	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.757199282	sgMsh2	cell line
chr19	16383254	16383254	G	A	ENSMUST00000025541.5	1	ENSMUSG00000024639	missense	V/M	314	Gnaq	ENSMUST00000025541.5:c.940G>A	ENSMUSP00000025541.5:p.Val314Met	H-2-Kb	9	5	7	FILKMFMDL	FILKMFVDL	NetMHC	268.8	623.27	2.319	355	0.228	358.268	502.216	1.402	623.27	268.8	645.4	411.6	381.1623536	362.3347605	317.8703353	354.201177	M3_p20	0.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.234	355	0	0	NA	19qA	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr2	37414545	37414545	A	G	ENSMUST00000100143.9	5	ENSMUSG00000075376	missense	F/L	68	Rc3h2	ENSMUST00000100143.9:c.202T>C	ENSMUSP00000097721.3:p.Phe68Leu	H-2-Kb	9	9	3	VNLALLQLV	VNFALLQLV	NetMHC	330.6	79.15	0.239	126	0.262	408.521	107.778	0.264	79.15	330.6	84	576.7	131.5558	369.0710667	161.5288124	447.9711029	M3_p20	2.528571429	2.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.269	126	0	0	NA	2qB	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr19	13234706	13234706	T	G	ENSMUST00000207246.3	2	ENSMUSG00000096365	missense	L/R	152	Olfr1463	ENSMUST00000207246.3:c.455T>G	ENSMUSP00000146566.1:p.Leu152Arg	H-2-Kb	9	5	7	IMGCYVRGF	IMGCYVLGF	NetMHC	361.83	442.74	1.224	526	0.137	432.694	379.524	0.877	442.74	361.83	1080.7	895.6	316.3078717	431.6283877	292.583614	433.7604991	M3_p20	0.414285714	0.985714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.138	526	0	0	NA	19qA	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.611073104	sgMsh2	cell line
chr19	34495079	34495079	T	A	ENSMUST00000049572.14	1	ENSMUSG00000024781	missense	N/I	314	Lipa	ENSMUST00000049572.14:c.941A>T	ENSMUSP00000053270.8:p.Asn314Ile	H-2-Kb	9	10	2	KIYFHYNQS	KNYFHYNQS	SMM	64.88	48.99	0.755	86	0.326	249.819	160.276	0.642	266.32	412.09	254.9	592.1	48.99028884	64.87987433	65.65230826	87.54876014	M3_p20	-1.542857143	-0.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.314	86	0	0	NA	19qC1	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr19	34620037	34620037	T	C	ENSMUST00000087357.4	1	ENSMUSG00000067297	missense	I/V	60	Ifit1bl2	ENSMUST00000087357.4:c.178A>G	ENSMUSP00000093816.2:p.Ile60Val	H-2-Kb	9	9	3	YSVGMHNLL	YSIGMHNLL	SMM	380.286	260.082	0.684	397	0.242	455.117	282.173	0.62	226.52	468.41	459.6	891.9	260.0818226	380.2857045	304.2636004	441.8247089	M3_p20	0.942857143	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.238	397	0	0	NA	19qC1	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr19	13705156	13705156	A	G	ENSMUST00000216366.1	5	ENSMUSG00000051156	missense	T/A	110	Olfr1491	ENSMUST00000216366.1:c.328A>G	ENSMUSP00000149071.1:p.Thr110Ala	H-2-Kb	9	5	7	QMFFFLALG	QMFFFLTLG	SMM	107.922	144.248	1.337	615	0.167	440.66	649.506	1.474	1099.37	734.68	1443.9	1219.9	144.2480663	107.9220037	199.6411211	146.6391721	M3_p20	2.485714286	2.814285714	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.165	615	0	0	NA	19qA	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.730630886	sgMsh2	cell line
chr2	37202003	37202003	A	AT	ENSMUST00000218602.1	5	ENSMUSG00000059429	FS	Y/YX	254	Olfr365	ENSMUST00000218602.1:c.762dup	ENSMUSP00000151617.1:p.Gly255TrpfsTer9	H-2-Kb	9	10	3	FYWEYHLCL	NA	SMMPMBEC	298.71	NA	NA	515	0.25	449.646	NA	NA	NA	994.26	NA	502	NA	397.2921646	NA	298.7101638	M3_p20	0.171428571	0.171428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.251	515	0	0	NA	2qB	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr19	34495079	34495079	T	A	ENSMUST00000049572.14	1	ENSMUSG00000024781	missense	N/I	314	Lipa	ENSMUST00000049572.14:c.941A>T	ENSMUSP00000053270.8:p.Asn314Ile	H-2-Kb	10	10	2	KIYFHYNQSF	KNYFHYNQSF	NetMHCpan	234.5	117.4	0.501	86	0.326	484.311	421.142	0.87	191.66	238.61	117.4	234.5	650.6238811	730.0120014	674.3106206	763.5895917	M3_p20	-0.957142857	-0.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.314	86	0	0	NA	19qC1	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr2	91212313	91212313	T	C	ENSMUST00000028696.4	1	ENSMUSG00000002109	missense	N/D	401	Ddb2	ENSMUST00000028696.4:c.1201A>G	ENSMUSP00000028696.4:p.Asn401Asp	H-2-Db	9	5	7	TSLNEFDPM	TSLNEFNPM	NetMHCpan	311.5	820.6	2.634	384	0.289	424.011	1056.963	2.493	3969.66	1659.2	820.6	311.5	1263.63021	492.7424743	850.2957336	355.2793781	M3_p20	-0.514285714	-0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.282	384	0	0	NA	2qE1	chr2-82255917-97631195	5	3	2	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr2	89977882	89977882	C	T	ENSMUST00000111512.9	2	ENSMUSG00000042894	missense	L/F	35	Olfr1260	ENSMUST00000111512.9:c.103C>T	ENSMUSP00000107137.1:p.Leu35Phe	H-2-Kb	8	7	5	LIYSFTLI	LIYSLTLI	NetMHCpan	11.9	188.2	15.815	412	0.041	32.154	424.803	13.211	291.47	11.98	188.2	11.9	654.2443789	62.04974485	558.1359543	52.32870654	M3_p20	1.828571429	1.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.043	412	0	0	NA	2qE1	chr2-82255917-97631195	5	3	2	0.91	4.029540036	NA	1	0.190406837	sgMsh2	cell line
chr2	89296493	89296493	G	T	ENSMUST00000099787.1	NA	ENSMUSG00000075094	missense	P/H	259	Olfr1230	ENSMUST00000099787.1:c.776C>A	ENSMUSP00000097375.1:p.Pro259His	H-2-Kb	8	5	7	IILYMRHV	IILYMRPV	NetMHC	110.45	93.66	0.848	315	0.19	275.635	190.876	0.692	93.66	110.45	196.7	268.3	189.5570756	290.8975074	192.1940772	282.9697428	M3_p20	0.771428571	0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.194	315	0	0	NA	2qE1	chr2-82255917-97631195	5	3	2	0.91	4.029540036	NA	1	0.859044799	sgMsh2	cell line
chr2	91480474	91480474	A	G	ENSMUST00000028689.3	1	ENSMUSG00000027253	missense	H/R	620	Lrp4	ENSMUST00000028689.3:c.1859A>G	ENSMUSP00000028689.3:p.His620Arg	H-2-Kb	8	11	1	RVIERANL	HVIERANL	NetMHCpan	173.1	960.6	5.549	92	0.239	250.512	917.53	3.663	984.16	192.18	960.6	173.1	874.4601036	330.1718172	660.2980276	308.8445912	M3_p20	0.4	0.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.229	92	0	0	NA	2qE1	chr2-82255917-97631195	5	3	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr2	88034611	88034611	T	C	ENSMUST00000129056.2	2	ENSMUSG00000075140	missense	N/S	176	Olfr73	ENSMUST00000129056.2:c.527A>G	ENSMUSP00000149472.1:p.Asn176Ser	H-2-Kb	8	10	2	ISHFFCEF	INHFFCEF	NetMHCpan	49.3	91.5	1.856	130	0.1	240.521	452.759	1.882	314.31	197.42	91.5	49.3	699.4231455	378.2160895	591.2075887	283.6220554	M3_p20	0.485714286	0.728571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.117	130	0	0	NA	2qD	chr2-82255917-97631195	5	3	2	0.91	4.029540036	NA	1	0.518083719	sgMsh2	cell line
chr2	130240140	130240140	TG	T	ENSMUST00000077988.7	1	ENSMUSG00000060332	FS	L/X	414	Tmc2	ENSMUST00000077988.7:c.1243del	ENSMUSP00000077139.1:p.Ala415ProfsTer20	H-2-Kb	8	12	1	PTFSFSAV	NA	SMM	143.794	NA	NA	192	0.292	196.942	NA	NA	NA	225.33	NA	240.5	NA	143.7937467	NA	168.5543635	M3_p20	1.328571429	1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.29	192	0	0	NA	2qF1	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr2	119139420	119139420	GT	G	ENSMUST00000094695.11	1	ENSMUSG00000070730	FS	T/X	387	Rmdn3	ENSMUST00000094695.11:c.1159del	ENSMUSP00000092283.5:p.Thr387ArgfsTer46	H-2-Kb	8	37	0	YSQDFQKL	NA	SMM	227.898	NA	NA	87	0.425	263.57	NA	NA	NA	233.55	NA	302.9	NA	227.8977303	NA	293.5891489	M3_p20	-1.228571429	-1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.418	87	0	0	NA	2qE5	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr2	88101738	88101738	A	C	ENSMUST00000117860.1	NA	ENSMUSG00000046590	missense	L/R	83	Olfr1165-ps	ENSMUST00000117860.1:c.248T>G	ENSMUSP00000149054.1:p.Leu83Arg	H-2-Kb	8	5	7	SVFTPKRL	SVFTPKLL	SMMPMBEC	174.88	413.752	2.366	402	0.189	193.199	403.987	2.091	456.57	249.7	309.9	209.9	394.2212222	176.4980859	413.7518989	174.8799418	M3_p20	0.014285714	0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.181	402	0	0	NA	2qD	chr2-82255917-97631195	5	3	2	0.91	4.029540036	NA	1	0.801479941	sgMsh2	cell line
chr2	88794555	88794555	T	C	ENSMUST00000216213.1	5	ENSMUSG00000059023	missense	Y/H	58	Olfr1201	ENSMUST00000216213.1:c.172T>C	ENSMUSP00000150454.1:p.Tyr58His	H-2-Kb	8	10	2	MHFFLFYL	MYFFLFYL	SMM	74.087	119.327	1.611	338	0.189	100.741	203.67	2.022	318.98	257.59	277.4	112	119.3273511	74.08665723	129.9391436	89.4828896	M3_p20	1.642857143	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.198	338	0	0	NA	2qE1	chr2-82255917-97631195	5	3	2	0.91	4.029540036	NA	1	0.876757063	sgMsh2	cell line
chr2	110738777	110738777	T	A	ENSMUST00000099623.9	5	ENSMUSG00000074968	missense	I/L	481	Ano3	ENSMUST00000099623.9:c.1441A>T	ENSMUSP00000097219.3:p.Ile481Leu	H-2-Kb	8	4	8	FFAIFMAL	FFAIFMAI	SMM	78.839	511.376	6.486	43	0.233	232.827	1428.596	6.136	2048.58	324.81	2868.6	940.3	511.3755976	78.83879904	808.611661	140.8445349	M3_p20	2.771428571	2.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.216	43	0	0	NA	2qE3	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	0.95646225	sgMsh2	cell line
chr2	128685915	128685915	T	C	ENSMUST00000014499.9	1	ENSMUSG00000014355	missense	Q/R	41	Anapc1	ENSMUST00000014499.9:c.122A>G	ENSMUSP00000014499.3:p.Gln41Arg	H-2-Kb	8	5	7	LNLQLRRL	LNLQLRQL	SMM	216.641	373.887	1.726	124	0.21	275.027	456.143	1.659	735.41	356.54	538.4	330.4	373.8866857	216.6406749	356.2377999	219.6544469	M3_p20	-0.657142857	-0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.217	124	0	0	NA	2qF1	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	0.960890316	sgMsh2	cell line
chr2	88767458	88767458	T	A	ENSMUST00000217588.2	5	ENSMUSG00000075115	missense	T/S	286	Olfr1200	ENSMUST00000217588.2:c.856A>T	ENSMUSP00000149757.1:p.Thr286Ser	H-2-Kb	8	8	4	VIYSLRNS	VIYTLRNS	SMM	80.675	74.945	0.929	566	0.048	290.039	253.26	0.873	376.58	439.88	1232.4	1339.4	74.94454029	80.67519058	129.9391436	140.197413	M3_p20	-0.371428571	0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.053	566	0	0	NA	2qE1	chr2-82255917-97631195	5	3	2	0.91	4.029540036	NA	1	0.234687497	sgMsh2	cell line
chr2	112042552	112042552	A	G	ENSMUST00000213961.2	5	ENSMUSG00000074947	missense	V/A	160	Olfr1312	ENSMUST00000213961.2:c.479T>C	ENSMUSP00000150415.1:p.Val160Ala	H-2-Kb	9	6	6	VQLAFAVNL	VQLAFVVNL	NetMHC	26.8	25.64	0.957	504	0.282	182.136	162.886	0.894	25.64	26.8	29.8	26.9	313.4079437	337.3727491	295.9715726	382.1641989	M3_p20	2.1	2.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.286	504	0	0	NA	2qE3	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr2	89013584	89013584	A	G	ENSMUST00000217000.1	5	ENSMUSG00000075107	missense	I/T	160	Olfr1216	ENSMUST00000217000.1:c.479T>C	ENSMUSP00000149441.1:p.Ile160Thr	H-2-Kb	9	10	2	VTFTLQLPL	VIFTLQLPL	NetMHCpan	22.1	29.4	1.33	423	0.274	77.388	75.367	0.974	58.24	51.44	29.4	22.1	92.49324152	109.6755952	94.24319478	103.3356082	M3_p20	1.2	1.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.267	423	0	0	NA	2qE1	chr2-82255917-97631195	5	3	2	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr2	89977882	89977882	C	T	ENSMUST00000111512.9	2	ENSMUSG00000042894	missense	L/F	35	Olfr1260	ENSMUST00000111512.9:c.103C>T	ENSMUSP00000107137.1:p.Leu35Phe	H-2-Kb	9	9	3	YSFTLIGNL	YSLTLIGNL	NetMHCpan	30.8	159.7	5.185	412	0.041	163.774	484.819	2.96	207.12	52.6	159.7	30.8	937.7995068	334.2796971	762.5178243	274.9476424	M3_p20	1.471428571	1.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.043	412	0	0	NA	2qE1	chr2-82255917-97631195	5	3	2	0.91	4.029540036	NA	1	0.190406837	sgMsh2	cell line
chr2	110738777	110738777	T	A	ENSMUST00000099623.9	5	ENSMUSG00000074968	missense	I/L	481	Ano3	ENSMUST00000099623.9:c.1441A>T	ENSMUSP00000097219.3:p.Ile481Leu	H-2-Kb	9	3	9	VFFAIFMAL	VFFAIFMAI	NetMHC	66.1	284.24	4.3	43	0.233	88.015	251.715	2.86	284.24	66.1	262.3	81.6	234.4822647	94.43000224	241.1293081	104.2917608	M3_p20	2.771428571	2.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.216	43	0	0	NA	2qE3	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	0.95646225	sgMsh2	cell line
chr2	111335694	111335694	C	A	ENSMUST00000099618.1	NA	ENSMUSG00000096554	missense	R/M	128	Olfr1282	ENSMUST00000099618.1:c.383G>T	ENSMUSP00000097213.1:p.Arg128Met	H-2-Kb	9	10	2	CMPLHYSSI	CRPLHYSSI	NetMHC	94.4	1410.95	14.947	1230	0.058	136.949	1266.807	9.25	1410.95	94.4	2800.2	169.4	724.6194716	104.4984864	1122.664526	174.2809827	M3_p20	0.085714286	0.185714286	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.054	1230	0	0	NA	2qE3	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	0.239115563	sgMsh2	cell line
chr2	88896946	88896946	A	G	ENSMUST00000214297.1	5	ENSMUSG00000075114	missense	I/T	217	Olfr1208	ENSMUST00000214297.1:c.650T>C	ENSMUSP00000149695.1:p.Ile217Thr	H-2-Kb	9	7	5	ISYITILSI	ISYIIILSI	NetMHCpan	74.4	161.2	2.167	327	0.232	183.527	264.472	1.441	264.55	114.06	161.2	74.4	347.6241981	252.9938709	264.3930288	253.0754397	M3_p20	2.071428571	2.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.236	327	0	0	NA	2qE1	chr2-82255917-97631195	5	3	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr2	89013584	89013584	A	G	ENSMUST00000217000.1	5	ENSMUSG00000075107	missense	I/T	160	Olfr1216	ENSMUST00000217000.1:c.479T>C	ENSMUSP00000149441.1:p.Ile160Thr	H-2-Kb	9	8	4	VQVTFTLQL	VQVIFTLQL	NetMHCpan	78.9	118.6	1.503	423	0.274	216.847	205.068	0.946	149.97	129.43	118.6	78.9	315.5803838	368.2222268	260.1656766	304.2636004	M3_p20	1.385714286	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.267	423	0	0	NA	2qE1	chr2-82255917-97631195	5	3	2	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr2	86160070	86160070	T	C	ENSMUST00000215624.1	NA	ENSMUSG00000075202	missense	Q/R	100	Olfr1042	ENSMUST00000215624.1:c.299A>G	ENSMUSP00000151053.1:p.Gln100Arg	H-2-Kb	9	4	8	TFYACATRL	TFYACATQL	NetMHC	130.05	202.58	1.558	482	0.214	226.469	285.13	1.259	202.58	130.05	232	133.6	430.63567	330.4532291	338.259498	319.3375581	M3_p20	0.485714286	0.885714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.204	482	0	0	NA	2qD	chr2-82255917-97631195	5	3	2	0.91	4.029540036	NA	1	0.903325459	sgMsh2	cell line
chr2	89296493	89296493	G	T	ENSMUST00000099787.1	NA	ENSMUSG00000075094	missense	P/H	259	Olfr1230	ENSMUST00000099787.1:c.776C>A	ENSMUSP00000097375.1:p.Pro259His	H-2-Kb	9	4	8	CIILYMRHV	CIILYMRPV	NetMHC	155.05	143.07	0.923	315	0.19	464.071	356.564	0.768	143.07	155.05	281.5	349.9	431.6283877	578.2424886	594.6343592	796.6177885	M3_p20	0.771428571	1.628571429	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.194	315	0	0	NA	2qE1	chr2-82255917-97631195	5	3	2	0.91	4.029540036	NA	1	0.859044799	sgMsh2	cell line
chr2	89977882	89977882	C	T	ENSMUST00000111512.9	2	ENSMUSG00000042894	missense	L/F	35	Olfr1260	ENSMUST00000111512.9:c.103C>T	ENSMUSP00000107137.1:p.Leu35Phe	H-2-Kb	9	5	7	FALIYSFTL	FALIYSLTL	NetMHCpan	140.7	135.8	0.965	412	0.041	203.151	234.631	1.155	217.43	180.82	135.8	140.7	251.8314697	225.4810248	297.3377153	291.9106903	M3_p20	1.728571429	1.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.043	412	0	0	NA	2qE1	chr2-82255917-97631195	5	3	2	0.91	4.029540036	NA	1	0.190406837	sgMsh2	cell line
chr2	91284247	91284247	A	G	ENSMUST00000102594.10	1	ENSMUSG00000040591	missense	F/L	147	1110051M20Rik	ENSMUST00000102594.10:c.439T>C	ENSMUSP00000099654.4:p.Phe147Leu	H-2-Kb	9	8	4	QIQLYYSEF	QIQFYYSEF	SMM	177.873	191.034	1.074	257	0.241	233.567	248.13	1.062	224.46	181.21	352.1	442.3	191.0337056	177.8729877	271.8003427	285.9235978	M3_p20	-0.542857143	-0.3	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.238	257	0	0	NA	2qE1	chr2-82255917-97631195	5	3	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr2	119139420	119139420	GT	G	ENSMUST00000094695.11	1	ENSMUSG00000070730	FS	T/X	387	Rmdn3	ENSMUST00000094695.11:c.1159del	ENSMUSP00000092283.5:p.Thr387ArgfsTer46	H-2-Kb	9	45	0	DGYIFLSAI	NA	NetMHC	187.49	NA	NA	87	0.425	309.473	NA	NA	NA	187.49	NA	212.4	NA	406.5462879	NA	510.7989549	M3_p20	2.185714286	2.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.418	87	0	0	NA	2qE5	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr2	91284247	91284247	A	G	ENSMUST00000102594.10	1	ENSMUSG00000040591	missense	F/L	147	1110051M20Rik	ENSMUST00000102594.10:c.439T>C	ENSMUSP00000099654.4:p.Phe147Leu	H-2-Kb	9	9	3	IQLYYSEFL	IQFYYSEFL	NetMHCpan	192.4	29.6	0.154	257	0.241	382.31	125.453	0.328	51.33	204.72	29.6	192.4	199.5767748	559.8993973	219.4067579	608.4851727	M3_p20	0.5	0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.238	257	0	0	NA	2qE1	chr2-82255917-97631195	5	3	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr2	88794555	88794555	T	C	ENSMUST00000216213.1	5	ENSMUSG00000059023	missense	Y/H	58	Olfr1201	ENSMUST00000216213.1:c.172T>C	ENSMUSP00000150454.1:p.Tyr58His	H-2-Kb	9	11	1	HFFLFYLSF	YFFLFYLSF	SMM	65.934	42.083	0.638	338	0.189	164.189	97.984	0.597	139.96	233.7	867.9	956.3	42.08332054	65.93408748	56.00799166	94.67820161	M3_p20	1.985714286	1.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.198	338	0	0	NA	2qE1	chr2-82255917-97631195	5	3	2	0.91	4.029540036	NA	1	0.876757063	sgMsh2	cell line
chr2	91284247	91284247	A	G	ENSMUST00000102594.10	1	ENSMUSG00000040591	missense	F/L	147	1110051M20Rik	ENSMUST00000102594.10:c.439T>C	ENSMUSP00000099654.4:p.Phe147Leu	H-2-Kb	9	3	9	FLFAFQIQL	FLFAFQIQF	NetMHCpan	235.9	1129.7	4.789	257	0.241	317.333	742.822	2.341	735.56	268.86	1129.7	235.9	750.0841699	444.7438999	632.7760017	365.8053055	M3_p20	1.242857143	2.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.238	257	0	0	NA	2qE1	chr2-82255917-97631195	5	3	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr2	89977882	89977882	C	T	ENSMUST00000111512.9	2	ENSMUSG00000042894	missense	L/F	35	Olfr1260	ENSMUST00000111512.9:c.103C>T	ENSMUSP00000107137.1:p.Leu35Phe	H-2-Kb	9	3	9	VIFALIYSF	VIFALIYSL	SMM	272.339	161.477	0.593	412	0.041	305.185	129.778	0.425	98.08	292.5	57.7	414.6	161.47675	272.3391013	183.7595844	317.8703353	M3_p20	1.942857143	2.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.043	412	0	0	NA	2qE1	chr2-82255917-97631195	5	3	2	0.91	4.029540036	NA	1	0.190406837	sgMsh2	cell line
chr2	91212313	91212313	T	C	ENSMUST00000028696.4	1	ENSMUSG00000002109	missense	N/D	401	Ddb2	ENSMUST00000028696.4:c.1201A>G	ENSMUSP00000028696.4:p.Asn401Asp	H-2-Kb	9	5	7	TSLNEFDPM	TSLNEFNPM	NetMHC	293.8	93.15	0.317	384	0.289	405.271	170.16	0.42	93.15	293.8	137.5	472.5	202.8196365	433.6206938	206.1816449	376.9207095	M3_p20	-0.514285714	-0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.282	384	0	0	NA	2qE1	chr2-82255917-97631195	5	3	2	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr2	117177703	117177703	A	G	ENSMUST00000028829.12	1	ENSMUSG00000027351	missense	I/M	363	Spred1	ENSMUST00000028829.12:c.1089A>G	ENSMUSP00000028829.6:p.Ile363Met	H-2-Kb	9	10	2	CMYQVSCML	CIYQVSCML	SMM	228.618	511.811	2.239	158	0.285	331.205	563.356	1.701	483.81	295.31	614.9	367.1	511.811453	228.6177783	851.6281337	411.386466	M3_p20	0.971428571	0.971428571	TRUE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.291	158	0	0	NA	2qE5	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr2	88896946	88896946	A	G	ENSMUST00000214297.1	5	ENSMUSG00000075114	missense	I/T	217	Olfr1208	ENSMUST00000214297.1:c.650T>C	ENSMUSP00000149695.1:p.Ile217Thr	H-2-Kb	9	5	7	LVISYITIL	LVISYIIIL	NetMHCpan	136.8	607.9	4.444	327	0.232	297.255	480.237	1.616	707.28	319.65	607.9	136.8	290.4758291	274.859024	352.5737704	320.8115533	M3_p20	2.071428571	2.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.236	327	0	0	NA	2qE1	chr2-82255917-97631195	5	3	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr2	82256483	82256483	A	T	ENSMUST00000047527.7	1	ENSMUSG00000070866	missense	T/S	219	Zfp804a	ENSMUST00000047527.7:c.655A>T	ENSMUSP00000041941.7:p.Thr219Ser	H-2-Kb	9	4	8	FAFPKKASV	FAFPKKATV	NetMHC	359.39	373.83	1.04	160	0.219	445.232	458.695	1.03	373.83	359.39	412.6	398.3	504.7891366	492.1641774	534.872168	502.6318444	M3_p20	-0.2	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.245	160	0	0	NA	2qD	chr2-82255917-97631195	5	3	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr2	120986661	120986661	A	G	ENSMUST00000067582.13	1	ENSMUSG00000054484	missense	T/A	233	Tmem62	ENSMUST00000067582.13:c.697A>G	ENSMUSP00000064310.7:p.Thr233Ala	H-2-Kb	9	4	8	IWFGHFTAS	IWFGHFTTS	SMM	41.22	43.763	1.062	137	0.423	221.645	251.959	1.137	420.31	365.62	547.3	671	43.76329367	41.22019102	83.60841685	77.6694089	M3_p20	0.328571429	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.434	137	0	0	NA	2qE5	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr2	110738777	110738777	T	A	ENSMUST00000099623.9	5	ENSMUSG00000074968	missense	I/L	481	Ano3	ENSMUST00000099623.9:c.1441A>T	ENSMUSP00000097219.3:p.Ile481Leu	H-2-Kb	9	7	5	IFMALWATV	IFMAIWATV	NetMHC	392.73	768.5	1.957	43	0.233	446.418	790.899	1.772	768.5	392.73	567.5	397.1	986.5293264	583.5929005	813.2985537	495.735477	M3_p20	1.7	2.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.216	43	0	0	NA	2qE3	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	0.95646225	sgMsh2	cell line
chr2	88794555	88794555	T	C	ENSMUST00000216213.1	5	ENSMUSG00000059023	missense	Y/H	58	Olfr1201	ENSMUST00000216213.1:c.172T>C	ENSMUSP00000150454.1:p.Tyr58His	H-2-Kb	9	7	5	GSPMHFFLF	GSPMYFFLF	SMM	299.302	239.944	0.802	338	0.189	332.253	254.008	0.765	359.52	467.22	211.9	327.8	239.9440583	299.3022626	268.0711022	336.7053368	M3_p20	1.328571429	1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.198	338	0	0	NA	2qE1	chr2-82255917-97631195	5	3	2	0.91	4.029540036	NA	1	0.876757063	sgMsh2	cell line
chr2	87656102	87656102	A	AT	ENSMUST00000135875.3	5	ENSMUSG00000111747	FS	M/NX	273	Olfr1134	ENSMUST00000135875.3:c.817dup	ENSMUSP00000150837.1:p.Met273AsnfsTer23	H-2-Kb	9	20	0	DSYVKPTYL	NA	SMM	254.748	NA	NA	333	0.297	435.96	NA	NA	NA	486.22	NA	545.4	NA	254.7475407	NA	385.7003207	M3_p20	-0.114285714	-0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.316	333	0	0	NA	2qD	chr2-82255917-97631195	5	3	2	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr2	88794555	88794555	T	C	ENSMUST00000216213.1	5	ENSMUSG00000059023	missense	Y/H	58	Olfr1201	ENSMUST00000216213.1:c.172T>C	ENSMUSP00000150454.1:p.Tyr58His	H-2-Kb	9	9	3	PMHFFLFYL	PMYFFLFYL	SMM	99.566	17.503	0.176	338	0.189	493.774	110.51	0.224	190.1	819.57	486.9	1090.9	17.50289954	99.56575699	30.92074862	167.9770694	M3_p20	1.642857143	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.198	338	0	0	NA	2qE1	chr2-82255917-97631195	5	3	2	0.91	4.029540036	NA	1	0.876757063	sgMsh2	cell line
chr2	158768178	158768178	C	T	ENSMUST00000029183.2	1	ENSMUSG00000027654	missense	P/L	22	Fam83d	ENSMUST00000029183.2:c.65C>T	ENSMUSP00000029183.2:p.Pro22Leu	H-2-Db	9	8	4	CGPLNPTEL	CGPPNPTEL	NetMHC	65.56	425.32	6.487	24	0.208	216.905	644.766	2.973	425.32	65.56	306.4	93.7	864.2114181	340.1104688	1154.968129	410.7428385	M3_p20	-0.471428571	-0.214285714	TRUE	FALSE	FALSE	1	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.263	24	0	0	NA	2qH1	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr2	144502992	144502992	T	G	ENSMUST00000081982.11	1	ENSMUSG00000037259	missense	N/H	282	Dzank1	ENSMUST00000081982.11:c.844A>C	ENSMUSP00000080643.5:p.Asn282His	H-2-Db	9	6	6	SMVPMHTPI	SMVPMNTPI	NetMHCpan	144	267.7	1.859	150	0.333	187.569	250.676	1.336	283.68	162.51	267.7	144	221.1159138	212.6277776	233.6522675	228.3336925	M3_p20	0.5	0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.333	150	0	0	NA	2qG1	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr2	178354939	178354939	G	A	ENSMUST00000081134.9	1	ENSMUSG00000060445	missense	P/L	1157	Sycp2	ENSMUST00000081134.9:c.3470C>T	ENSMUSP00000079909.3:p.Pro1157Leu	H-2-Db	9	9	3	YSLASGPPF	YSPASGPPF	NetMHC	383.66	992.3	2.586	206	0.296	434.425	1327.158	3.055	992.3	383.66	1149.2	416.4	1590.816182	489.350459	1505.116095	452.4493827	M3_p20	0.571428571	0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.302	206	0	0	NA	2qH4	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr3	105005546	105005546	C	A	ENSMUST00000077548.11	1	ENSMUSG00000062127	missense	A/S	341	Cttnbp2nl	ENSMUST00000077548.11:c.1021G>T	ENSMUSP00000076751.5:p.Ala341Ser	H-2-Kb	8	11	1	SAYSYAKA	AAYSYAKA	NetMHC	11.09	24.13	2.176	124	0.331	44.921	75.024	1.67	24.13	11.09	53.5	32.2	129.0446488	68.82401428	96.54727043	57.64212727	M3_p20	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.335	124	0	0	NA	3qF2.2	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr3	79512526	79512526	C	A	ENSMUST00000076136.6	5	ENSMUSG00000061175	missense	G/C	148	Fnip2	ENSMUST00000076136.6:c.442G>T	ENSMUSP00000075497.4:p.Gly148Cys	H-2-Kb	8	7	5	MSYKCSTL	MSYKGSTL	NetMHC	15.05	52.48	3.487	514	0.235	23.118	65.298	2.825	52.48	15.05	43.7	16.4	87.04423244	30.32075422	78.11600059	29.83595888	M3_p20	-0.171428571	-0.171428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.233	514	0	0	NA	3qE3	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr3	88449705	88449705	T	C	ENSMUST00000029700.11	1	ENSMUSG00000028064	missense	I/V	320	Sema4a	ENSMUST00000029700.11:c.958A>G	ENSMUSP00000029700.5:p.Ile320Val	H-2-Kb	8	8	4	VSRVYAVF	VSRIYAVF	NetMHC	46.39	61.42	1.324	78	0.205	77.618	86.384	1.113	61.42	46.39	74.2	72.3	105.1332282	96.76983488	98.56892043	82.93541077	M3_p20	0.914285714	1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.204	78	0	0	NA	3qF1	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	0.903325459	sgMsh2	cell line
chr3	108624645	108624645	A	G	ENSMUST00000051145.14	1	ENSMUSG00000040389	missense	Q/R	449	Wdr47	ENSMUST00000051145.14:c.1346A>G	ENSMUSP00000057482.8:p.Gln449Arg	H-2-Kb	8	11	1	RMYQQMLL	QMYQQMLL	NetMHC	67.4	94.29	1.399	150	0.207	121.812	213.148	1.75	94.29	67.4	182.1	93.4	244.1968177	150.2242346	524.4933667	251.0383085	M3_p20	0.442857143	0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.208	150	0	0	NA	3qF3	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	0.921037723	sgMsh2	cell line
chr3	96699439	96699439	G	C	ENSMUST00000064900.15	1	ENSMUSG00000028101	missense	R/P	15	Pias3	ENSMUST00000064900.15:c.44G>C	ENSMUSP00000069259.9:p.Arg15Pro	H-2-Kb	8	8	4	MSFPVSEL	MSFRVSEL	NetMHCpan	65.4	23.7	0.362	40	0.2	90.805	32.02	0.353	18.83	87.91	23.7	65.4	40.3403814	93.70008827	45.7867692	129.3421274	M3_p20	0.585714286	0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.222	40	0	0	NA	3qF2.1	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	0.983030646	sgMsh2	cell line
chr2	132240580	132240580	A	G	ENSMUST00000110164.7	2	ENSMUSG00000027341	missense	F/S	90	Tmem230	ENSMUST00000110164.7:c.269T>C	ENSMUSP00000105793.1:p.Phe90Ser	H-2-Kb	8	11	1	SLPGFYHL	FLPGFYHL	NetMHCpan	98.2	522.1	5.317	212	0.278	164.475	459.527	2.794	694.44	114.79	522.1	98.2	387.9180607	214.1608096	396.9538331	229.4774419	M3_p20	0.557142857	0.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.284	212	0	0	NA	2qF2	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr3	28794409	28794409	G	A	ENSMUST00000060500.8	1	ENSMUSG00000050192	missense	C/Y	139	Eif5a2	ENSMUST00000060500.8:c.416G>A	ENSMUSP00000050289.7:p.Cys139Tyr	H-2-Kb	8	7	5	VSVMYAMS	VSVMCAMS	SMM	72.734	814.217	11.194	466	0.249	100.979	2855.808	28.281	5114.17	120.91	4897.4	389.8	814.2166892	72.73442335	792.027024	81.04757034	M3_p20	0.985714286	1.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.261	466	0	0	NA	3qA3	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr3	62602681	62602681	C	T	ENSMUST00000058535.5	1	ENSMUSG00000043441	missense	G/R	338	Gpr149	ENSMUST00000058535.5:c.1012G>A	ENSMUSP00000060893.5:p.Gly338Arg	H-2-Kb	8	8	4	HVVRFQSL	HVVGFQSL	NetMHCpan	94.1	530	5.632	148	0.135	176.107	900.3	5.112	1288.64	123.79	530	94.1	999.401507	291.5680954	801.1982647	228.4230889	M3_p20	0.885714286	0.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.141	148	0	0	NA	3qE1	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	0.624357302	sgMsh2	cell line
chr3	90211937	90211937	T	TC	ENSMUST00000029548.8	5	ENSMUSG00000027939	FS	S/SX	1856	Nup210l	ENSMUST00000029548.8:c.5573dup	ENSMUSP00000029548.4:p.His1859SerfsTer?	H-2-Kb	8	30	0	LVMEYKTL	NA	NetMHCpan	47.5	NA	NA	245	0.224	193.558	NA	NA	NA	130.23	NA	47.5	NA	389.7086091	NA	256.8857419	M3_p20	0.071428571	0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.213	245	0	0	NA	3qF1	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	0.943178052	sgMsh2	cell line
chr3	103928888	103928888	T	C	ENSMUST00000068879.10	1	ENSMUSG00000044098	missense	I/T	414	Rsbn1	ENSMUST00000068879.10:c.1241T>C	ENSMUSP00000069246.4:p.Ile414Thr	H-2-Kb	8	5	7	AYYALATV	AYYALAIV	NetMHC	253.92	755.72	2.976	115	0.183	354.427	877.561	2.476	755.72	253.92	648.4	272.6	999.401507	436.2545806	1204.314735	461.0414792	M3_p20	1.185714286	1.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.232	115	0	0	NA	3qF2.2	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr3	116891951	116891951	T	C	ENSMUST00000195905.4	5	ENSMUSG00000033386	missense	Y/H	324	Frrs1	ENSMUST00000195905.4:c.970T>C	ENSMUSP00000143255.1:p.Tyr324His	H-2-Kb	8	10	2	SHYIFFAE	SYYIFFAE	SMM	62.193	100.171	1.611	396	0.232	189.236	314.034	1.659	494.18	286.27	516.8	344.9	100.1705365	62.19278428	133.88749	92.20192747	M3_p20	0.557142857	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.242	396	0	0	NA	3qG1	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr3	14481277	14481277	A	G	ENSMUST00000037321.7	1	ENSMUSG00000039710	missense	K/E	161	Slc7a12	ENSMUST00000037321.7:c.481A>G	ENSMUSP00000038574.7:p.Lys161Glu	H-2-Kb	8	7	5	SSFIELSV	SSFIKLSV	NetMHCpan	262.5	124.8	0.475	353	0.238	331.596	395.589	1.193	273.88	480.71	124.8	262.5	517.2970479	357.8821189	541.6765067	305.3092764	M3_p20	1.457142857	1.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.241	353	0	0	NA	3qA1	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr3	68927791	68927791	A	G	ENSMUST00000107812.7	5	ENSMUSG00000027778	missense	I/T	439	Ift80	ENSMUST00000107812.7:c.1316T>C	ENSMUSP00000103442.1:p.Ile439Thr	H-2-Kb	8	11	1	TIFLFEAS	IIFLFEAS	SMM	114.483	40.902	0.357	133	0.203	496.639	214.122	0.431	378.83	1363.31	368.3	827.8	40.90157201	114.482736	59.94321055	165.4778997	M3_p20	1.628571429	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.219	133	0	0	NA	3qE1	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	0.969746448	sgMsh2	cell line
chr3	14537323	14537323	A	G	ENSMUST00000169079.7	1	ENSMUSG00000027550	missense	T/A	159	Lrrcc1	ENSMUST00000169079.7:c.475A>G	ENSMUSP00000126560.1:p.Thr159Ala	H-2-Kb	9	5	7	VGLHFLANL	VGLHFLTNL	NetMHC	4.15	7.44	1.793	154	0.338	41.016	55.134	1.344	7.44	4.15	6.9	5.1	102.8276712	76.93252737	105.7426037	77.6694089	M3_p20	1.328571429	1.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.326	154	0	0	NA	3qA1	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr2	132240580	132240580	A	G	ENSMUST00000110164.7	2	ENSMUSG00000027341	missense	F/S	90	Tmem230	ENSMUST00000110164.7:c.269T>C	ENSMUSP00000105793.1:p.Phe90Ser	H-2-Kb	9	10	2	VSLPGFYHL	VFLPGFYHL	NetMHC	22.77	187.13	8.218	212	0.278	93.901	246.108	2.621	187.13	22.77	200.4	30	291.8166046	157.8010905	341.3893746	169.9221522	M3_p20	0.557142857	0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.284	212	0	0	NA	2qF2	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr3	103928888	103928888	T	C	ENSMUST00000068879.10	1	ENSMUSG00000044098	missense	I/T	414	Rsbn1	ENSMUST00000068879.10:c.1241T>C	ENSMUSP00000069246.4:p.Ile414Thr	H-2-Kb	9	4	8	AAYYALATV	AAYYALAIV	NetMHC	58.87	162.1	2.754	115	0.183	163.252	247.691	1.517	162.1	58.87	234.7	93.1	260.6813732	233.4049166	369.1900603	312.7879401	M3_p20	1.185714286	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.232	115	0	0	NA	3qF2.2	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr2	151706653	151706653	T	C	ENSMUST00000060196.2	1	ENSMUSG00000044364	missense	V/A	100	Tmem74b	ENSMUST00000060196.2:c.299T>C	ENSMUSP00000060017.2:p.Val100Ala	H-2-Kb	9	6	6	VDYGFASAL	VDYGFVSAL	NetMHC	61.82	58.19	0.941	45	0.422	78.38	73.491	0.938	58.19	61.82	68.8	72.6	78.18258038	84.16082809	79.66177885	102.8608242	M3_p20	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.419	45	0	0	NA	2qG3	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr3	97562644	97562644	TA	T	ENSMUST00000029730.4	1	ENSMUSG00000028089	FS	F/X	855	Chd1l	ENSMUST00000029730.4:c.2565del	ENSMUSP00000029730.4:p.Phe855LeufsTer67	H-2-Kb	9	31	0	LTYTTFPEV	NA	NetMHC	74.75	NA	NA	497	0.225	154.974	NA	NA	NA	74.75	NA	100	NA	209.947158	NA	249.6031145	M3_p20	-0.114285714	0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.23	497	0	0	NA	3qF2.1	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr3	62602681	62602681	C	T	ENSMUST00000058535.5	1	ENSMUSG00000043441	missense	G/R	338	Gpr149	ENSMUST00000058535.5:c.1012G>A	ENSMUSP00000060893.5:p.Gly338Arg	H-2-Kb	9	7	5	KHVVRFQSL	KHVVGFQSL	NetMHC	123.24	1672.99	13.575	148	0.135	308.967	1765.932	5.716	1672.99	123.24	1270.9	267.9	1884.126249	350.0338139	1858.874201	358.3026333	M3_p20	0.885714286	0.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.141	148	0	0	NA	3qE1	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	0.624357302	sgMsh2	cell line
chr3	116891951	116891951	T	C	ENSMUST00000195905.4	5	ENSMUSG00000033386	missense	Y/H	324	Frrs1	ENSMUST00000195905.4:c.970T>C	ENSMUSP00000143255.1:p.Tyr324His	H-2-Kb	9	10	2	SHYIFFAEG	SYYIFFAEG	NetMHC	123.41	230.42	1.867	396	0.232	130.94	148.813	1.137	230.42	123.41	199.2	193	98.4260372	136.4928808	94.8964574	125.3862749	M3_p20	0.957142857	0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.242	396	0	0	NA	3qG1	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr2	180472194	180472194	C	A	ENSMUST00000038225.7	1	ENSMUSG00000038963	missense	L/I	475	Slco4a1	ENSMUST00000038225.7:c.1423C>A	ENSMUSP00000045023.7:p.Leu475Ile	H-2-Kb	9	9	3	VFIMHCPNV	VFLMHCPNV	NetMHC	154.14	154.16	1	147	0.238	264.235	279.514	1.058	154.16	154.14	321.3	266.5	288.4762076	287.1507798	270.5515336	261.9690589	M3_p20	0.685714286	1.585714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.253	147	0	0	NA	2qH4	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr3	88652659	88652659	T	C	ENSMUST00000063119.4	NA	ENSMUSG00000049741	missense	T/A	162	Rxfp4	ENSMUST00000063119.4:c.484A>G	ENSMUSP00000058732.4:p.Thr162Ala	H-2-Kb	9	4	8	VFWARVVAL	VFWARVVTL	NetMHC	154.36	184.67	1.196	127	0.181	172.166	183.582	1.066	184.67	154.36	154.2	174.8	238.8416155	224.9624328	182.4945923	169.531342	M3_p20	1.485714286	1.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.205	127	0	0	NA	3qF1	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	0.907753525	sgMsh2	cell line
chr3	14481277	14481277	A	G	ENSMUST00000037321.7	1	ENSMUSG00000039710	missense	K/E	161	Slc7a12	ENSMUST00000037321.7:c.481A>G	ENSMUSP00000038574.7:p.Lys161Glu	H-2-Kb	9	7	5	SSFIELSVL	SSFIKLSVL	NetMHCpan	88.9	31.7	0.357	353	0.238	169.262	50.82	0.3	40.51	167.48	31.7	88.9	65.63114787	171.044849	61.12938126	181.6561058	M3_p20	2.114285714	2.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.241	353	0	0	NA	3qA1	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr3	68927791	68927791	A	G	ENSMUST00000107812.7	5	ENSMUSG00000027778	missense	I/T	439	Ift80	ENSMUST00000107812.7:c.1316T>C	ENSMUSP00000103442.1:p.Ile439Thr	H-2-Kb	9	11	1	TIFLFEAST	IIFLFEAST	NetMHC	181.4	78.59	0.433	133	0.203	236.705	140.504	0.594	78.59	181.4	219.4	418.7	139.6722084	239.3922023	141.3350901	234.0183969	M3_p20	0.885714286	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.219	133	0	0	NA	3qE1	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	0.969746448	sgMsh2	cell line
chr2	144502992	144502992	T	G	ENSMUST00000081982.11	1	ENSMUSG00000037259	missense	N/H	282	Dzank1	ENSMUST00000081982.11:c.844A>C	ENSMUSP00000080643.5:p.Asn282His	H-2-Kb	9	6	6	SMVPMHTPI	SMVPMNTPI	NetMHCpan	204.7	977.9	4.777	150	0.333	291.792	890.02	3.05	1246.33	226.22	977.9	204.7	755.2835049	357.3633412	802.1396792	389.2691619	M3_p20	0.5	0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.333	150	0	0	NA	2qG1	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr3	121761416	121761416	T	C	ENSMUST00000029770.7	1	ENSMUSG00000028127	missense	E/G	634	Abcd3	ENSMUST00000029770.7:c.1901A>G	ENSMUSP00000029770.5:p.Glu634Gly	H-2-Kb	9	8	4	KHHGYYLHM	KHHEYYLHM	NetMHCpan	203.1	122.6	0.604	283	0.254	240.279	212.282	0.883	194.89	318.34	122.6	203.1	229.67303	237.1974414	243.3604501	243.3604501	M3_p20	-0.528571429	-0.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.256	283	0	0	NA	3qG1	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr2	149407305	149407305	T	G	ENSMUST00000047008.8	1	ENSMUSG00000033156	missense	L/V	92	Cst10	ENSMUST00000047008.8:c.274T>G	ENSMUSP00000043520.2:p.Leu92Val	H-2-Kb	9	7	5	KNYYVKIEL	KNYYLKIEL	NetMHCpan	293.7	136.1	0.463	478	0.282	432.908	202.967	0.469	191.59	419.02	136.1	293.7	214.3433431	446.7967444	279.4151821	551.1248581	M3_p20	0.357142857	0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.296	478	0	0	NA	2qG3	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr3	158318471	158318471	G	T	ENSMUST00000200137.4	1	ENSMUSG00000028176	missense	L/I	96	Lrrc7	ENSMUST00000200137.4:c.286C>A	ENSMUSP00000142498.1:p.Leu96Ile	H-2-Db	9	9	3	ASIVNLKEL	ASLVNLKEL	NetMHCpan	18.7	28.1	1.503	311	0.244	27.357	35.126	1.284	39.8	27.51	28.1	18.7	30.45229302	27.20320034	40.69771255	35.12125287	M3_p20	0.771428571	0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.239	311	0	0	NA	3qH4	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr4	127048748	127048748	A	G	ENSMUST00000106102.8	1	ENSMUSG00000043872	missense	F/L	616	Zmym1	ENSMUST00000106102.8:c.1846T>C	ENSMUSP00000101708.2:p.Phe616Leu	H-2-Db	9	8	4	CSLLNTVHV	CSLFNTVHV	NetMHCpan	65.9	115	1.745	190	0.305	134.513	212.264	1.578	172.4	100.13	115	65.9	252.1273737	168.8962473	297.5568825	191.2361536	M3_p20	1.228571429	1.328571429	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.324	190	0	0	NA	4qD2.2	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr4	128475742	128475742	A	C	ENSMUST00000184063.2	5	ENSMUSG00000028804	missense	E/A	1889	Csmd2	ENSMUST00000184063.2:c.5666A>C	ENSMUSP00000138958.2:p.Glu1889Ala	H-2-Db	9	9	3	VTAQNWDSL	VTEQNWDSL	NetMHCpan	100.1	1118	11.169	151	0.265	291.418	849.797	2.916	1567.14	189.63	1118	100.1	581.5941105	393.2058767	507.656557	415.4990164	M3_p20	-0.942857143	-0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.258	151	0	0	NA	4qD2.2	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr4	75956378	75956378	C	A	ENSMUST00000173376.7	1	ENSMUSG00000028399	missense	R/M	1281	Ptprd	ENSMUST00000173376.7:c.3842G>T	ENSMUSP00000133468.1:p.Arg1281Met	H-2-Db	9	9	3	STMVCLQPI	STRVCLQPI	NetMHCpan	182.5	5235.2	28.686	114	0.219	379.307	5485.672	14.462	10034.86	283.75	5235.2	182.5	5736.143402	580.2564812	4961.00883	474.8648239	M3_p20	1.685714286	1.685714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.221	114	0	0	NA	4qC3	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	0.97860258	sgMsh2	cell line
chr4	53543568	53543568	T	G	ENSMUST00000102911.9	1	ENSMUSG00000028412	missense	F/V	371	Slc44a1	ENSMUST00000102911.9:c.1111T>G	ENSMUSP00000099975.3:p.Phe371Val	H-2-Db	9	3	9	SAVQNEQGV	SAVQNEQGF	NetMHCpan	285	1199.9	4.21	109	0.358	439.175	1124.262	2.56	1656.13	315.27	1199.9	285	1048.624499	678.6096014	852.2558677	563.0798678	M3_p20	-0.857142857	-0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.364	109	0	0	NA	4qB2	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr4	84973993	84973993	G	A	ENSMUST00000169371.8	5	ENSMUSG00000038070	missense	V/I	372	Cntln	ENSMUST00000169371.8:c.1114G>A	ENSMUSP00000130491.2:p.Val372Ile	H-2-Db	9	3	9	KVLRNQEDI	KVLRNQEDV	SMMPMBEC	215.065	535.266	2.489	52	0.269	275.444	751.813	2.729	1456.12	448.93	812.4	259.4	691.2258958	291.4875433	535.2664216	215.0651295	M3_p20	-1.457142857	-1.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.281	52	0	0	NA	4qC4	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr4	53040735	53040735	A	C	ENSMUST00000030010.3	1	ENSMUSG00000015243	missense	F/V	1971	Abca1	ENSMUST00000030010.3:c.5911T>G	ENSMUSP00000030010.3:p.Phe1971Val	H-2-Db	9	9	3	DAVLNKNSI	DAFLNKNSI	SMM	231.004	245.256	1.062	100	0.4	434.531	573.778	1.32	1530.77	624.96	902.3	1359.8	245.2562028	231.0042659	242.4208669	244.1012481	M3_p20	0.114285714	0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.365	100	0	0	NA	4qB2	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr4	113483888	113483888	A	G	ENSMUST00000169631.7	1	ENSMUSG00000078598	missense	Y/H	1419	Skint5	ENSMUST00000169631.7:c.4255T>C	ENSMUSP00000132470.1:p.Tyr1419His	H-2-Kb	8	5	7	ATILYMHL	ATILYMYL	NetMHC	4.93	6.7	1.359	254	0.327	14.773	17.882	1.21	6.7	4.93	15.5	9	20.26469166	21.21973715	21.12224132	20.5466016	M3_p20	1.257142857	1.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.329	254	0	0	NA	4qD1	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr4	115496100	115496100	TA	T	ENSMUST00000030487.2	1	ENSMUSG00000028715	FS	L/X	5	Cyp4a14	ENSMUST00000030487.2:c.14del	ENSMUSP00000030487.2:p.Leu5TyrfsTer60	H-2-Kb	8	1	5	MGFFYLAL	MGFFLFSP	NetMHCpan	5.6	744.4	132.929	50	0.16	8.822	1514.642	171.684	3458.5	11.16	744.4	5.6	1408.445349	8.011982647	1620.839455	9.632521787	M3_p20	1.9	1.9	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.16	50	0	0	NA	4qD1	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	0.708490556	sgMsh2	cell line
chr4	115496100	115496100	TA	T	ENSMUST00000030487.2	1	ENSMUSG00000028715	FS	L/X	5	Cyp4a14	ENSMUST00000030487.2:c.14del	ENSMUSP00000030487.2:p.Leu5TyrfsTer60	H-2-Kb	8	48	0	SSISHACL	NA	NetMHC	26.78	NA	NA	50	0.16	42.587	NA	NA	NA	26.78	NA	86	NA	42.04748265	NA	43.12608157	M3_p20	1.114285714	1.114285714	FALSE	FALSE	FALSE	1	FALSE	0	Strelka2;Vardict	2	0.16	50	0	0	NA	4qD1	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	0.708490556	sgMsh2	cell line
chr4	126832123	126832123	A	G	ENSMUST00000102607.9	1	ENSMUSG00000028830	missense	H/R	442	AU040320	ENSMUST00000102607.9:c.1325A>G	ENSMUSP00000099667.3:p.His442Arg	H-2-Kb	8	8	4	VQYRWEEL	VQYHWEEL	NetMHCpan	39.9	67.7	1.697	67	0.299	60.954	148.184	2.431	150.91	40.11	67.7	39.9	165.4778997	88.66250554	145.4587999	81.79749427	M3_p20	-1.914285714	-1.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.289	67	0	0	NA	4qD2.2	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr4	43507096	43507096	AC	A	ENSMUST00000030183.9	1	ENSMUSG00000028463	FS	T/X	14	Car9	ENSMUST00000030183.9:c.44del	ENSMUSP00000030183.3:p.Pro15GlnfsTer79	H-2-Kb	8	52	0	WAWMFCPV	NA	SMMPMBEC	66.948	NA	NA	17	0.353	103.204	NA	NA	NA	98.08	NA	227.7	NA	108.3278191	NA	66.94836882	M3_p20	1.528571429	1.528571429	FALSE	FALSE	FALSE	1	FALSE	0	Strelka2;Vardict	2	0.3529	17	0	0	NA	4qA5	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr4	115014223	115014223	A	G	ENSMUST00000030490.12	1	ENSMUSG00000028718	missense	N/S	330	Stil	ENSMUST00000030490.12:c.989A>G	ENSMUSP00000030490.6:p.Asn330Ser	H-2-Kb	8	6	6	TLHLFSNV	TLHLFNNV	NetMHCpan	103.7	224.2	2.162	177	0.305	136.53	304.681	2.232	334.06	109.1	224.2	103.7	326.3923717	201.7158386	282.9697428	163.9607892	M3_p20	1.014285714	1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.303	177	0	0	NA	4qD1	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr4	113483888	113483888	A	G	ENSMUST00000169631.7	1	ENSMUSG00000078598	missense	Y/H	1419	Skint5	ENSMUST00000169631.7:c.4255T>C	ENSMUSP00000132470.1:p.Tyr1419His	H-2-Kb	8	7	5	ILYMHLQI	ILYMYLQI	NetMHCpan	66.5	26.6	0.4	254	0.327	185.475	37.904	0.204	32.88	185.28	26.6	66.5	70.91530907	274.6249558	42.92793522	185.6692572	M3_p20	0.857142857	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.329	254	0	0	NA	4qD1	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr4	74170660	74170660	A	G	ENSMUST00000084474.5	1	ENSMUSG00000049122	missense	S/G	365	Frmd3	ENSMUST00000084474.5:c.1093A>G	ENSMUSP00000081514.5:p.Ser365Gly	H-2-Kb	8	8	4	QSRGFHSL	QSRSFHSL	SMM	150.224	65.274	0.435	106	0.217	214.23	81.245	0.379	42.93	203.17	173.7	465.2	65.27396586	150.2242346	97.21650414	225.2890066	M3_p20	-0.442857143	-0.442857143	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.206	106	0	0	NA	4qC3	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	0.912181591	sgMsh2	cell line
chr3	153509458	153509458	T	C	ENSMUST00000200397.4	1	ENSMUSG00000052544	missense	I/V	20	St6galnac3	ENSMUST00000200397.4:c.58A>G	ENSMUSP00000143747.1:p.Ile20Val	H-2-Kb	8	11	1	VLLLAMRL	ILLLAMRL	SMM	221.177	235.907	1.067	188	0.277	239.723	253.353	1.057	302.11	262.11	270.8	238.6	235.9065504	221.1770188	234.8226582	240.8463117	M3_p20	2.057142857	2.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.276	188	0	0	NA	3qH3	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr4	20064005	20064005	A	C	ENSMUST00000098242.3	1	ENSMUSG00000073987	missense	K/T	234	Ggh	ENSMUST00000098242.3:c.701A>C	ENSMUSP00000095843.3:p.Lys234Thr	H-2-Kb	8	10	2	FTYPVYAV	FKYPVYAV	SMM	232.135	1272.741	5.483	163	0.387	311.21	3820.621	12.277	5414.14	319.82	5562.8	302.6	1272.740898	232.1346655	2227.101447	387.9180607	M3_p20	0.757142857	0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.386	163	0	0	NA	4qA3	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr3	153509458	153509458	T	C	ENSMUST00000200397.4	1	ENSMUSG00000052544	missense	I/V	20	St6galnac3	ENSMUST00000200397.4:c.58A>G	ENSMUSP00000143747.1:p.Ile20Val	H-2-Kb	8	4	8	VSFIALCV	VSFIALCI	SMM	205.94	373.887	1.816	188	0.277	246.911	373.028	1.511	640.38	398.71	236.9	259	373.8866857	205.9396641	372.1688324	234.8226582	M3_p20	2.685714286	2.685714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.276	188	0	0	NA	3qH3	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr4	113483888	113483888	A	G	ENSMUST00000169631.7	1	ENSMUSG00000078598	missense	Y/H	1419	Skint5	ENSMUST00000169631.7:c.4255T>C	ENSMUSP00000132470.1:p.Tyr1419His	H-2-Kb	9	4	8	SATILYMHL	SATILYMYL	NetMHC	30.45	50.44	1.656	254	0.327	128.412	152.174	1.185	50.44	30.45	94.4	55.4	209.947158	201.4234359	235.640535	215.4021332	M3_p20	1.257142857	1.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.329	254	0	0	NA	4qD1	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr4	103143160	103143160	A	C	ENSMUST00000097945.9	1	ENSMUSG00000028522	missense	Q/H	233	Mier1	ENSMUST00000097945.9:c.699A>C	ENSMUSP00000095558.3:p.Gln233His	H-2-Kb	9	6	6	VGSMFHAEI	VGSMFQAEI	NetMHCpan	56.9	188.7	3.316	106	0.283	337.801	674.731	1.997	301.73	83.7	188.7	56.9	1210.904798	785.4345477	1047.731497	591.9022625	M3_p20	0.5	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.304	106	0	0	NA	4qC6	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr3	153509458	153509458	T	C	ENSMUST00000200397.4	1	ENSMUSG00000052544	missense	I/V	20	St6galnac3	ENSMUST00000200397.4:c.58A>G	ENSMUSP00000143747.1:p.Ile20Val	H-2-Kb	9	4	8	VSFIALCVL	VSFIALCIL	NetMHCpan	76.8	80.4	1.047	188	0.277	115.737	102.269	0.884	98.83	105.84	80.4	76.8	105.7085218	125.6348137	138.4363053	134.9739632	M3_p20	3.342857143	3.342857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.276	188	0	0	NA	3qH3	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr4	118734571	118734571	A	G	ENSMUST00000217522.2	3	ENSMUSG00000070820	missense	E/G	14	Olfr1339	ENSMUST00000217522.2:c.41A>G	ENSMUSP00000148988.1:p.Glu14Gly	H-2-Kb	9	7	5	SSVSGFILL	SSVSEFILL	NetMHC	114.79	78.01	0.68	147	0.265	211.811	154.118	0.728	78.01	114.79	132.4	180.9	175.8368925	242.7224795	277.4917016	308.4963287	M3_p20	2.557142857	2.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.289	147	0	0	NA	4qD2.1	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr4	126832123	126832123	A	G	ENSMUST00000102607.9	1	ENSMUSG00000028830	missense	H/R	442	AU040320	ENSMUST00000102607.9:c.1325A>G	ENSMUSP00000099667.3:p.His442Arg	H-2-Kb	9	7	5	IVQYRWEEL	IVQYHWEEL	NetMHC	174.25	167.19	0.959	67	0.299	278.449	296.503	1.065	167.19	174.25	354.2	445.8	308.3968972	297.9270937	284.6098982	258.9703239	M3_p20	-1.914285714	-0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.289	67	0	0	NA	4qD2.2	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr4	103143160	103143160	A	C	ENSMUST00000097945.9	1	ENSMUSG00000028522	missense	Q/H	233	Mier1	ENSMUST00000097945.9:c.699A>C	ENSMUSP00000095558.3:p.Gln233His	H-2-Kb	9	8	4	SMFHAEIPV	SMFQAEIPV	SMM	181.18	218.328	1.205	106	0.283	241.915	277.522	1.147	236.44	216.99	363	335.2	218.3282833	181.1798935	318.6031021	266.8394274	M3_p20	0.714285714	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.304	106	0	0	NA	4qC6	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr4	43507096	43507096	AC	A	ENSMUST00000030183.9	1	ENSMUSG00000028463	FS	T/X	14	Car9	ENSMUST00000030183.9:c.44del	ENSMUSP00000030183.3:p.Pro15GlnfsTer79	H-2-Kb	9	51	0	SWAWMFCPV	NA	SMM	131.556	NA	NA	17	0.353	249.521	NA	NA	NA	247.13	NA	306.6	NA	131.5558	NA	251.9126636	M3_p20	1.528571429	1.528571429	FALSE	FALSE	FALSE	1	FALSE	0	Strelka2;Vardict	2	0.3529	17	0	0	NA	4qA5	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr4	64007763	64007763	A	G	ENSMUST00000107377.9	1	ENSMUSG00000028364	missense	Y/H	927	Tnc	ENSMUST00000107377.9:c.2779T>C	ENSMUSP00000103000.3:p.Tyr927His	H-2-Kb	9	6	6	SYRIKHAPI	SYRIKYAPI	NetMHC	338.79	85	0.251	72	0.444	476.479	142.207	0.298	85	338.79	565.7	1778.7	146.9298381	514.1738673	137.4833165	438.783209	M3_p20	-0.342857143	-0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.469	72	0	0	NA	4qC1	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr4	113004506	113004506	A	G	ENSMUST00000138966.8	1	ENSMUSG00000087194	missense	M/T	618	Skint6	ENSMUST00000138966.8:c.1853T>C	ENSMUSP00000121870.2:p.Met618Thr	H-2-Kb	9	10	2	STLLKKIGL	SMLLKKIGL	NetMHC	344.11	192.99	0.561	309	0.262	450.184	204.444	0.454	192.99	344.11	587.9	803.6	154.5645878	410.3080144	215.8986864	490.0608399	M3_p20	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.274	309	0	0	NA	4qD1	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr4	32725960	32725960	CA	C	ENSMUST00000178134.1	5	ENSMUSG00000058006	FS	A/X	2626	Mdn1	ENSMUST00000178134.1:c.7880del	ENSMUSP00000136222.1:p.Asn2627ThrfsTer27	H-2-Kb	9	10	3	VATRHLFIL	NA	SMM	230.202	NA	NA	126	0.286	308.995	NA	NA	NA	418.19	NA	322.7	NA	230.202481	NA	295.2908568	M3_p20	0.928571429	0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.326	126	0	0	NA	4qA5	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr4	46007511	46007511	A	C	ENSMUST00000107777.8	1	ENSMUSG00000035517	missense	E/A	521	Tdrd7	ENSMUST00000107777.8:c.1562A>C	ENSMUSP00000103406.2:p.Glu521Ala	H-2-Kb	9	11	1	AFYSKNPRV	EFYSKNPRV	SMM	292.489	1023.552	3.499	193	0.337	429.847	2150.851	5.004	3217.15	519.09	7027.5	1153.4	1023.552209	292.4893114	1084.551052	340.6042008	M3_p20	-1.628571429	-0.928571429	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.33	193	0	0	NA	4qB1	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr5	41820669	41820669	CT	C	ENSMUST00000050556.10	5	ENSMUSG00000061755	FS	S/X	1101	Bod1l	ENSMUST00000050556.10:c.3301del	ENSMUSP00000058618.7:p.Ser1101AlafsTer57	H-2-Db	9	55	0	KMLQNIKPL	NA	NetMHC	31.78	NA	NA	249	0.201	50.478	NA	NA	NA	31.78	NA	48.4	NA	52.55572119	NA	58.69079604	M3_p20	-0.057142857	-0.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2008	249	0	0	NA	5qB3	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	0.889155648	sgMsh2	cell line
chr5	24477100	24477100	T	C	ENSMUST00000024123.8	1	ENSMUSG00000023353	missense	V/A	198	Agap3	ENSMUST00000024123.8:c.593T>C	ENSMUSP00000024123.4:p.Val198Ala	H-2-Db	9	10	2	FAFSLEDEI	FVFSLEDEI	NetMHC	85.78	1256.91	14.653	169	0.219	123.544	1036.389	8.389	1256.91	85.78	1654.5	193.2	815.8681887	127.5322436	763.0798752	119.5556211	M3_p20	-0.028571429	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.206	169	0	0	NA	5qA3	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	0.912181591	sgMsh2	cell line
chr4	144332663	144332663	T	C	ENSMUST00000105751.1	5	ENSMUSG00000078508	missense	W/R	315	Gm13128	ENSMUST00000105751.1:c.943T>C	ENSMUSP00000101377.1:p.Trp315Arg	H-2-Db	9	8	4	SQHRNYGQL	SQHWNYGQL	NetMHC	156.41	359.5	2.298	311	0.26	253.683	379.065	1.494	359.5	156.41	497.5	303.5	328.5640174	218.5848208	398.6300187	288.7819203	M3_p20	-1.8	-1.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.247	311	0	0	NA	4qE1	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr5	3571771	3571771	GA	G	ENSMUST00000008451.11	1	ENSMUSG00000008307	FS	K/X	7	1700109H08Rik	ENSMUST00000008451.11:c.25del	ENSMUSP00000008451.5:p.Met9TrpfsTer55	H-2-Db	9	31	0	FSIAWWDAL	NA	NetMHC	161.39	NA	NA	107	0.252	162.322	NA	NA	NA	161.39	NA	161.5	NA	195.7131469	NA	163.1435844	M3_p20	0.942857143	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.243	107	0	0	NA	5qA1	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr5	63806698	63806698	A	T	ENSMUST00000159584.2	1	ENSMUSG00000090061	missense	K/N	1208	Nwd2	ENSMUST00000159584.2:c.3624A>T	ENSMUSP00000124712.1:p.Lys1208Asn	H-2-Db	9	7	5	ILICNALSI	ILICKALSI	NetMHCpan	141.1	7481.9	53.026	243	0.3	238.859	9795.44	41.009	18580.86	208.18	7481.9	141.1	8762.337965	269.537999	10828.54237	322.5299134	M3_p20	1.828571429	2.485714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.31	243	0	0	NA	5qC3.1	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr5	3571771	3571771	GA	G	ENSMUST00000008451.11	1	ENSMUSG00000008307	FS	K/X	7	1700109H08Rik	ENSMUST00000008451.11:c.25del	ENSMUSP00000008451.5:p.Met9TrpfsTer55	H-2-Kb	8	27	0	VSYDFSIA	NA	NetMHC	23.52	NA	NA	107	0.252	51.845	NA	NA	NA	23.52	NA	28.4	NA	75.29046857	NA	87.24489012	M3_p20	0.385714286	0.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.243	107	0	0	NA	5qA1	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr5	83294647	83294647	A	G	ENSMUST00000053543.10	1	ENSMUSG00000049537	missense	I/T	193	Tecrl	ENSMUST00000053543.10:c.578T>C	ENSMUSP00000062122.4:p.Ile193Thr	H-2-Kb	8	8	4	IHYTRLLL	IHYIRLLL	NetMHCpan	57.4	46.9	0.817	100	0.27	167.5	176.014	1.051	96.91	95.26	46.9	57.4	255.1173529	239.7397234	272.1071791	245.8895091	M3_p20	0.242857143	0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.281	100	0	0	NA	5qE1	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr5	105606595	105606595	A	G	ENSMUST00000067924.12	1	ENSMUSG00000054720	missense	T/A	79	Lrrc8c	ENSMUST00000067924.12:c.235A>G	ENSMUSP00000066015.6:p.Thr79Ala	H-2-Kb	8	6	6	AVISTAPL	AVISTTPL	NetMHC	116.95	543.07	4.644	158	0.475	194.861	538.657	2.764	543.07	116.95	441.1	206.6	712.4263926	249.310173	534.2444264	183.1217795	M3_p20	1.6	1.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.48	158	0	0	NA	5qE5	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr5	3571771	3571771	GA	G	ENSMUST00000008451.11	1	ENSMUSG00000008307	FS	K/X	7	1700109H08Rik	ENSMUST00000008451.11:c.25del	ENSMUSP00000008451.5:p.Met9TrpfsTer55	H-2-Kb	8	33	0	IAWWDALL	NA	NetMHC	126.14	NA	NA	107	0.252	143.498	NA	NA	NA	126.14	NA	200.3	NA	160.597951	NA	126.3979412	M3_p20	0.842857143	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.243	107	0	0	NA	5qA1	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr5	24477100	24477100	T	C	ENSMUST00000024123.8	1	ENSMUSG00000023353	missense	V/A	198	Agap3	ENSMUST00000024123.8:c.593T>C	ENSMUSP00000024123.4:p.Val198Ala	H-2-Kb	8	8	4	VVFAFSLE	VVFVFSLE	SMM	34.494	33.093	0.959	169	0.219	112.342	92.342	0.822	150.11	183.97	512.5	437.1	33.09329418	34.49371732	34.57323355	40.71364636	M3_p20	1.585714286	2.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.206	169	0	0	NA	5qA3	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	0.912181591	sgMsh2	cell line
chr4	144565004	144565004	A	G	ENSMUST00000105748.1	5	ENSMUSG00000078506	missense	M/T	44	Aadacl4fm2	ENSMUST00000105748.1:c.131T>C	ENSMUSP00000101374.1:p.Met44Thr	H-2-Kb	8	11	1	TLHYFFQL	MLHYFFQL	NetMHCpan	42.3	48.8	1.154	220	0.386	175.549	130.503	0.743	218.44	221.41	48.8	42.3	150.9176382	211.2224132	110.0880046	139.8749679	M3_p20	0.742857143	0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.384	220	0	0	NA	4qE1	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr5	57720612	57720612	T	C	ENSMUST00000191837.5	1	ENSMUSG00000029108	missense	V/A	503	Pcdh7	ENSMUST00000191837.5:c.1508T>C	ENSMUSP00000142319.1:p.Val503Ala	H-2-Kb	8	5	7	TTREFNAV	TTREFNVV	SMM	170.506	401.55	2.355	159	0.22	273.109	916.574	3.356	1915.54	307.03	1295.2	590.7	401.5503419	170.5061311	537.9476318	239.1883374	M3_p20	-0.485714286	-0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.23	159	0	0	NA	5qC1	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr4	153386480	153386480	A	G	ENSMUST00000105646.2	5	ENSMUSG00000039546	missense	V/A	290	Ajap1	ENSMUST00000105646.2:c.869T>C	ENSMUSP00000101271.1:p.Val290Ala	H-2-Kb	8	6	6	IITITASL	IITITVSL	SMMPMBEC	287.568	829.354	2.884	146	0.322	381.064	1094.846	2.873	2140.69	471.23	1348.8	604.6	840.8915726	290.8975074	829.3541077	287.5676312	M3_p20	1.771428571	1.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.364	146	0	0	NA	4qE2	chr4-146067868-156223608	3	2	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr4	149469049	149469049	T	C	ENSMUST00000105693.1	1	ENSMUSG00000028992	missense	D/G	202	Nmnat1	ENSMUST00000105693.1:c.605A>G	ENSMUSP00000101318.1:p.Asp202Gly	H-2-Kb	8	6	6	FIYESGVL	FIYESDVL	SMM	209.768	492.879	2.35	202	0.356	400.327	1446.197	3.613	2225.22	505.71	2076.3	573.6	492.8786429	209.7683683	816.0936526	294.9442949	M3_p20	0.928571429	0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.358	202	0	0	NA	4qE2	chr4-146067868-156223608	3	2	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr4	144564983	144564983	A	G	ENSMUST00000105748.1	5	ENSMUSG00000078506	missense	L/P	51	Aadacl4fm2	ENSMUST00000105748.1:c.152T>C	ENSMUSP00000101374.1:p.Leu51Pro	H-2-Kb	8	5	7	LHYFFQPT	LHYFFQLT	NetMHCpan	236.5	344.9	1.458	192	0.333	357.167	962.247	2.694	1565.05	531.16	344.9	236.5	1075.820957	406.2000757	848.6722465	308.1342684	M3_p20	-0.671428571	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.333	192	0	0	NA	4qE1	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr5	87694728	87694728	C	T	ENSMUST00000197422.4	1	ENSMUSG00000063157	missense	A/T	147	Csn2	ENSMUST00000197422.4:c.439G>A	ENSMUSP00000143341.1:p.Ala147Thr	H-2-Kb	8	9	3	SLTSLANL	SLASLANL	SMM	381.716	341.775	0.895	101	0.277	487.6	375.638	0.77	720.32	664.91	348.8	569	341.7747702	381.7156799	402.476011	406.2000757	M3_p20	1.171428571	1.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.281	101	0	0	NA	5qE1	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr5	41820669	41820669	CT	C	ENSMUST00000050556.10	5	ENSMUSG00000061755	FS	S/X	1101	Bod1l	ENSMUST00000050556.10:c.3301del	ENSMUSP00000058618.7:p.Ser1101AlafsTer57	H-2-Kb	8	33	0	MCLNFLKL	NA	SMMPMBEC	213.668	NA	NA	249	0.201	284.779	NA	NA	NA	791.96	NA	294.3	NA	275.2580317	NA	213.6682534	M3_p20	1.328571429	1.328571429	FALSE	FALSE	FALSE	1	FALSE	0	Strelka2;Vardict	2	0.2008	249	0	0	NA	5qB3	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	0.889155648	sgMsh2	cell line
chr5	7305531	7305531	A	G	ENSMUST00000160634.1	1	ENSMUSG00000040514	missense	I/M	237	Tex47	ENSMUST00000160634.1:c.711A>G	ENSMUSP00000125471.1:p.Ile237Met	H-2-Kb	9	5	7	SMYNRPMHV	SMYNRPIHV	NetMHC	28.77	50.37	1.751	77	0.364	80.74	83.218	1.031	50.37	28.77	129.5	87.5	76.22720572	73.97926292	90.20902731	91.04372116	M3_p20	-1.142857143	-1.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.34	77	0	0	NA	5qA1	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr5	3571771	3571771	GA	G	ENSMUST00000008451.11	1	ENSMUSG00000008307	FS	K/X	7	1700109H08Rik	ENSMUST00000008451.11:c.25del	ENSMUSP00000008451.5:p.Met9TrpfsTer55	H-2-Kb	9	27	0	VSYDFSIAW	NA	NetMHC	37.79	NA	NA	107	0.252	103.487	NA	NA	NA	37.79	NA	151.3	NA	106.6866308	NA	100.2882377	M3_p20	0.371428571	0.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.243	107	0	0	NA	5qA1	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr5	61809673	61809673	C	T	ENSMUST00000053876.4	NA	ENSMUSG00000089992	missense	L/F	264	G6pd2	ENSMUST00000053876.4:c.790C>T	ENSMUSP00000131163.1:p.Leu264Phe	H-2-Kb	9	6	6	VMQSHFLQM	VMQSHLLQM	NetMHCpan	46.2	211.1	4.569	289	0.291	50.769	134.096	2.641	139.59	55.37	211.1	46.2	103.7791239	46.67775928	128.6026743	54.85926694	M3_p20	-0.357142857	0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.284	289	0	0	NA	5qC3.1	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr5	69559600	69559600	G	T	ENSMUST00000087228.10	1	ENSMUSG00000029208	missense	Q/H	168	Guf1	ENSMUST00000087228.10:c.504G>T	ENSMUSP00000084480.4:p.Gln168His	H-2-Kb	9	4	8	FFLAFEAHL	FFLAFEAQL	NetMHC	82.2	123.13	1.498	354	0.246	229.444	263.489	1.148	123.13	82.2	352.8	236.5	268.6024688	222.3873092	258.3747087	273.6843727	M3_p20	1.042857143	1.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	354	0	0	NA	5qC3.1	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr4	144565004	144565004	A	G	ENSMUST00000105748.1	5	ENSMUSG00000078506	missense	M/T	44	Aadacl4fm2	ENSMUST00000105748.1:c.131T>C	ENSMUSP00000101374.1:p.Met44Thr	H-2-Kb	9	10	2	HTLHYFFQL	HMLHYFFQL	NetMHCpan	47	60.3	1.283	220	0.386	134.804	68.981	0.512	115.84	115.35	60.3	47	70.00192775	185.8275068	67.95947262	154.2588183	M3_p20	0.742857143	0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.384	220	0	0	NA	4qE1	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr5	104968246	104968246	A	G	ENSMUST00000031239.12	1	ENSMUSG00000029299	missense	S/P	241	Abcg3	ENSMUST00000031239.12:c.721T>C	ENSMUSP00000031239.6:p.Ser241Pro	H-2-Kb	9	11	1	PIFKFFDSL	SIFKFFDSL	SMM	90.805	37.507	0.413	185	0.189	108.309	21.983	0.203	6.46	139.94	5	106.4	37.50679891	90.8050496	43.17675507	110.2173589	M3_p20	0.571428571	0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.184	185	0	0	NA	5qE5	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	0.814764139	sgMsh2	cell line
chr4	144564983	144564983	A	G	ENSMUST00000105748.1	5	ENSMUSG00000078506	missense	L/P	51	Aadacl4fm2	ENSMUST00000105748.1:c.152T>C	ENSMUSP00000101374.1:p.Leu51Pro	H-2-Kb	9	5	7	LHYFFQPTI	LHYFFQLTI	NetMHCpan	56.9	58	1.019	192	0.333	189.744	275.225	1.451	289.32	151.92	58	56.9	273.5961615	227.567375	276.8534884	237.82089	M3_p20	0.428571429	0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.333	192	0	0	NA	4qE1	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr5	3571771	3571771	GA	G	ENSMUST00000008451.11	1	ENSMUSG00000008307	FS	K/X	7	1700109H08Rik	ENSMUST00000008451.11:c.25del	ENSMUSP00000008451.5:p.Met9TrpfsTer55	H-2-Kb	9	31	0	FSIAWWDAL	NA	NetMHC	179.9	NA	NA	107	0.252	294.902	NA	NA	NA	179.9	NA	271.2	NA	375.9326101	NA	318.6031021	M3_p20	0.942857143	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.243	107	0	0	NA	5qA1	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr5	83294647	83294647	A	G	ENSMUST00000053543.10	1	ENSMUSG00000049537	missense	I/T	193	Tecrl	ENSMUST00000053543.10:c.578T>C	ENSMUSP00000062122.4:p.Ile193Thr	H-2-Kb	9	5	7	CHCIHYTRL	CHCIHYIRL	NetMHC	205.21	311.25	1.517	100	0.27	244.76	304.589	1.244	311.25	205.21	675.9	458.8	297.9270937	281.9096874	228.165512	207.6108278	M3_p20	0.157142857	0.157142857	TRUE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.281	100	0	0	NA	5qE1	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr5	3571771	3571771	GA	G	ENSMUST00000008451.11	1	ENSMUSG00000008307	FS	K/X	7	1700109H08Rik	ENSMUST00000008451.11:c.25del	ENSMUSP00000008451.5:p.Met9TrpfsTer55	H-2-Kb	9	32	0	SIAWWDALL	NA	NetMHC	227.13	NA	NA	107	0.252	356.707	NA	NA	NA	227.13	NA	500	NA	321.4474612	NA	391.9674468	M3_p20	0.842857143	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.243	107	0	0	NA	5qA1	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr4	144332663	144332663	T	C	ENSMUST00000105751.1	5	ENSMUSG00000078508	missense	W/R	315	Gm13128	ENSMUST00000105751.1:c.943T>C	ENSMUSP00000101377.1:p.Trp315Arg	H-2-Kb	9	11	1	RNYGQLKHL	WNYGQLKHL	NetMHCpan	245.3	536.3	2.186	311	0.26	329.878	408.502	1.238	637.61	521.47	536.3	245.3	249.5226649	287.1507798	280.704904	372.6061339	M3_p20	-0.671428571	-0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.247	311	0	0	NA	4qE1	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr5	90606874	90606874	A	G	ENSMUST00000031317.9	5	ENSMUSG00000029370	missense	S/P	195	Rassf6	ENSMUST00000031317.9:c.583T>C	ENSMUSP00000031317.6:p.Ser195Pro	H-2-Kb	9	4	8	HVYDHETPI	HVYDHETSI	SMM	221.876	386.465	1.742	228	0.259	421.609	748.334	1.775	1303.8	592.79	1059.9	587.8	386.4648502	221.8758325	436.7671833	255.4171179	M3_p20	-1.328571429	-1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.242	228	0	0	NA	5qE1	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr6	57600007	57600007	T	C	ENSMUST00000031817.9	1	ENSMUSG00000029798	missense	L/P	235	Herc6	ENSMUST00000031817.9:c.704T>C	ENSMUSP00000031817.8:p.Leu235Pro	H-2-Db	9	6	6	GALKNPSVI	GALKNLSVI	NetMHC	13.46	7.99	0.594	315	0.143	47.099	27.26	0.579	7.99	13.46	16.8	37.5	48.2636319	70.24574131	37.71985373	56.6982951	M3_p20	0.385714286	0.385714286	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.137	315	0	0	NA	6qB3	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.606645038	sgMsh2	cell line
chr6	57432499	57432499	A	T	ENSMUST00000227909.1	NA	ENSMUSG00000115253	missense	Y/F	270	Vmn1r20	ENSMUST00000227909.1:c.809A>T	ENSMUSP00000153815.1:p.Tyr270Phe	H-2-Db	9	11	1	FAYPTISPL	YAYPTISPL	NetMHCpan	195.9	160.5	0.819	458	0.116	491.745	460.71	0.937	318.07	309.63	160.5	195.9	617.4758832	712.2295691	603.3509488	673.8605002	M3_p20	0.328571429	0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.11	458	0	0	NA	6qB3	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.487087257	sgMsh2	cell line
chr6	42896714	42896714	GA	G	ENSMUST00000213952.2	5	ENSMUSG00000043119	FS	K/X	88	Olfr448	ENSMUST00000213952.2:c.267del	ENSMUSP00000150419.1:p.Lys89AsnfsTer9	H-2-Db	9	8	5	LAKKNLFLL	NA	SMMPMBEC	392.256	NA	NA	470	0.162	484.517	NA	NA	NA	1373.15	NA	532.9	NA	436.1340556	NA	392.2563655	M3_p20	0.414285714	0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.155	470	0	0	NA	6qB2.1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.686350226	sgMsh2	cell line
chr5	127604164	127604164	T	G	ENSMUST00000031367.14	1	ENSMUSG00000029416	missense	S/R	347	Slc15a4	ENSMUST00000031367.14:c.1039A>C	ENSMUSP00000031367.8:p.Ser347Arg	H-2-Kb	8	5	7	TTYALQRL	TTYALQSL	NetMHC	18.7	32.38	1.732	175	0.234	27.243	45.615	1.674	32.38	18.7	26.6	20.7	58.84912366	33.78625068	71.57148034	39.78689062	M3_p20	-0.085714286	-0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.254	175	0	0	NA	5qG1.2	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	8	4	8	VLVSYTRL	VLVSYTRI	NetMHC	19.39	171.38	8.839	170	0.241	31.763	209.772	6.604	171.38	19.39	99.5	20.3	348.1288376	53.67103866	248.1646968	43.22549746	M3_p20	0.642857143	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.266	170	0	0	NA	6qB2.1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	8	6	6	VSYTRLLV	VSYTRILV	NetMHCpan	35.2	39.9	1.134	170	0.241	94.957	84.621	0.891	32.04	39.69	39.9	35.2	129.3421274	150.2242346	135.1263357	158.7596015	M3_p20	0.642857143	0.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.266	170	0	0	NA	6qB2.1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr5	151561858	151561858	T	C	ENSMUST00000165928.3	5	ENSMUSG00000091794	missense	S/G	724	Vmn2r18	ENSMUST00000165928.3:c.2170A>G	ENSMUSP00000127506.1:p.Ser724Gly	H-2-Kb	8	5	7	SMVVFCGV	SMVVFCSV	NetMHC	46.03	69.18	1.503	400	0.22	157.77	147.604	0.936	69.18	46.03	69.4	98.4	230.0064421	222.1979255	225.8083514	217.1400833	M3_p20	2.771428571	2.771428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	400	0	0	NA	5qG3	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr5	135911218	135911218	GC	G	ENSMUST00000055808.5	1	ENSMUSG00000051391	FS	G/X	174	Ywhag	ENSMUST00000055808.5:c.521del	ENSMUSP00000051223.5:p.Gly174AlafsTer38	H-2-Kb	8	14	0	STTRFSTM	NA	NetMHC	50.97	NA	NA	49	0.204	122.847	NA	NA	NA	50.97	NA	87.3	NA	158.3944645	NA	187.8192059	M3_p20	-0.385714286	-0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.237	49	0	0	NA	5qG2	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr6	57432499	57432499	A	T	ENSMUST00000227909.1	NA	ENSMUSG00000115253	missense	Y/F	270	Vmn1r20	ENSMUST00000227909.1:c.809A>T	ENSMUSP00000153815.1:p.Tyr270Phe	H-2-Kb	8	9	3	LMFAYPTI	LMYAYPTI	NetMHCpan	23.5	18.4	0.783	458	0.116	117.837	79.517	0.675	27.59	68.28	18.4	23.5	140.5206015	189.5570756	131.4437679	167.3940435	M3_p20	1.057142857	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.11	458	0	0	NA	6qB3	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.487087257	sgMsh2	cell line
chr6	57210453	57210453	T	C	ENSMUST00000227421.1	NA	ENSMUSG00000064259	missense	M/T	199	Vmn1r13	ENSMUST00000227421.1:c.596T>C	ENSMUSP00000154429.1:p.Met199Thr	H-2-Kb	8	8	4	SAYTVIIL	SAYMVIIL	NetMHC	115.95	94.02	0.811	1301	0.131	153.083	167.312	1.093	94.02	115.95	126.3	126.8	208.324333	179.3659491	261.6616044	268.9923939	M3_p20	2.4	2.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.134	1301	0	0	NA	6qB3	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.593360841	sgMsh2	cell line
chr6	35270381	35270381	A	G	ENSMUST00000031868.4	1	ENSMUSG00000029843	missense	I/T	568	Slc13a4	ENSMUST00000031868.4:c.1703T>C	ENSMUSP00000031868.4:p.Ile568Thr	H-2-Kb	8	11	1	TVFSYGHC	IVFSYGHC	SMMPMBEC	126.398	45.787	0.362	230	0.109	145.752	48.403	0.332	38.66	171.24	51.8	148.7	51.01994663	142.8038776	45.7867692	126.3979412	M3_p20	0.542857143	0.542857143	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.118	230	0	0	NA	6qB1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.522511785	sgMsh2	cell line
chr5	150662367	150662367	GT	G	ENSMUST00000118316.7	5	ENSMUSG00000029655	FS	K/X	49	N4bp2l2	ENSMUST00000118316.7:c.147del	ENSMUSP00000113895.1:p.Lys49AsnfsTer30	H-2-Kb	8	15	0	IGSRWPPL	NA	NetMHC	178.15	NA	NA	90	0.189	200.455	NA	NA	NA	178.15	NA	220.3	NA	222.7101447	NA	180.6092545	M3_p20	-0.857142857	-0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.216	90	0	0	NA	5qG3	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	0.95646225	sgMsh2	cell line
chr6	30815960	30815960	A	G	ENSMUST00000048774.12	1	ENSMUSG00000025607	missense	V/A	480	Copg2	ENSMUST00000048774.12:c.1439T>C	ENSMUSP00000038368.6:p.Val480Ala	H-2-Kb	8	6	6	FIFNRAVL	FIFNRVVL	SMM	138.912	401.55	2.891	177	0.164	159.887	404.813	2.532	524.31	178.28	359.2	181.6	401.5503419	138.9120754	408.0750101	141.4946437	M3_p20	1.3	1.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.156	177	0	0	NA	6qA3.3	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.690778292	sgMsh2	cell line
chr6	18405230	18405230	T	C	ENSMUST00000090601.11	1	ENSMUSG00000000416	missense	Y/C	1090	Cttnbp2	ENSMUST00000090601.11:c.3269A>G	ENSMUSP00000088089.5:p.Tyr1090Cys	H-2-Kb	8	7	5	SSVTCASM	SSVTYASM	NetMHC	276.55	6.31	0.023	651	0.129	362.299	24.523	0.068	6.31	276.55	15.8	475.5	35.70590129	399.7053856	33.24604589	324.8927349	M3_p20	1.157142857	1.157142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.132	651	0	0	NA	6qA2	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.584504709	sgMsh2	cell line
chr6	69283934	69283934	TA	T	ENSMUST00000103349.1	NA	ENSMUSG00000076548	FS	Y/X	70	Igkv4-69	ENSMUST00000103349.1:c.208del	ENSMUSP00000100150.1:p.Tyr70MetfsTer26	H-2-Kb	8	25	0	VAVGLGPL	NA	NetMHC	277.12	NA	NA	687	0.146	319.498	NA	NA	NA	277.12	NA	307.3	NA	344.9371732	NA	331.6958211	M3_p20	1.6	1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.134	687	0	0	NA	6qC1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.593360841	sgMsh2	cell line
chr5	120524323	120524323	A	G	ENSMUST00000068326.13	1	ENSMUSG00000032754	missense	K/E	328	Slc8b1	ENSMUST00000068326.13:c.982A>G	ENSMUSP00000064714.7:p.Lys328Glu	H-2-Kb	8	5	7	ISWRVLEV	ISWRVLKV	NetMHCpan	233.9	238.6	1.02	65	0.246	347.104	258.844	0.746	365.25	414.36	238.6	233.9	279.0872523	367.0624846	225.8083514	327.1447838	M3_p20	0.357142857	0.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.243	65	0	0	NA	5qF	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr5	123998901	123998901	A	C	ENSMUST00000000939.14	1	ENSMUSG00000000915	missense	D/A	644	Hip1r	ENSMUST00000000939.14:c.1931A>C	ENSMUSP00000000939.8:p.Asp644Ala	H-2-Kb	8	6	6	VSKLDAPL	VSKLDDPL	SMMPMBEC	117.961	952.226	8.072	36	0.25	298.242	3760.799	12.61	6496.56	448.32	6794	857.5	1025.038081	148.1630809	952.2259222	117.9614222	M3_p20	-0.057142857	3.17E-17	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.269	36	0	0	NA	5qF	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr6	30815960	30815960	A	G	ENSMUST00000048774.12	1	ENSMUSG00000025607	missense	V/A	480	Copg2	ENSMUST00000048774.12:c.1439T>C	ENSMUSP00000038368.6:p.Val480Ala	H-2-Kb	8	4	8	IRFIFNRA	IRFIFNRV	SMMPMBEC	232.135	48.277	0.208	177	0.164	482.306	47.673	0.099	40.71	683.59	149.1	1240.7	47.06954498	281.0217928	48.27696948	232.1346655	M3_p20	-0.085714286	0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.156	177	0	0	NA	6qA3.3	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.690778292	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	9	3	9	LVLVSYTRL	LVLVSYTRI	NetMHC	46.33	202.94	4.38	170	0.241	99.281	285.444	2.875	202.94	46.33	207.6	48.9	371.6293451	149.6614677	363.2871195	157.1267038	M3_p20	0.642857143	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.266	170	0	0	NA	6qB2.1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr6	57432499	57432499	A	T	ENSMUST00000227909.1	NA	ENSMUSG00000115253	missense	Y/F	270	Vmn1r20	ENSMUST00000227909.1:c.809A>T	ENSMUSP00000153815.1:p.Tyr270Phe	H-2-Kb	9	11	1	FAYPTISPL	YAYPTISPL	NetMHC	61.59	61.61	1	458	0.116	103.321	112.661	1.09	61.61	61.59	63.1	64.7	162.2220929	141.9416992	246.1784313	216.8952295	M3_p20	0.328571429	0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.11	458	0	0	NA	6qB3	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.487087257	sgMsh2	cell line
chr5	129595427	129595427	T	G	ENSMUST00000031390.9	1	ENSMUSG00000029436	missense	S/A	148	Mmp17	ENSMUST00000031390.9:c.442T>G	ENSMUSP00000031390.8:p.Ser148Ala	H-2-Kb	9	5	7	RTFPRDAPL	RTFPRDSPL	NetMHC	69.85	178.55	2.556	165	0.291	126.8	193.56	1.527	178.55	69.85	126.7	77.3	219.8416627	205.1681772	208.5691158	176.2990613	M3_p20	-0.4	-0.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.28	165	0	0	NA	5qG1.3	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr5	150662367	150662367	GT	G	ENSMUST00000118316.7	5	ENSMUSG00000029655	FS	K/X	49	N4bp2l2	ENSMUST00000118316.7:c.147del	ENSMUSP00000113895.1:p.Lys49AsnfsTer30	H-2-Kb	9	14	0	IIGSRWPPL	NA	SMMPMBEC	70.186	NA	NA	90	0.189	71.886	NA	NA	NA	72.14	NA	246.2	NA	71.63248211	NA	70.18592048	M3_p20	-0.857142857	0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.216	90	0	0	NA	5qG3	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	0.95646225	sgMsh2	cell line
chr5	129162644	129162644	T	C	ENSMUST00000056617.13	1	ENSMUSG00000044017	missense	L/P	537	Adgrd1	ENSMUST00000056617.13:c.1610T>C	ENSMUSP00000060307.7:p.Leu537Pro	H-2-Kb	9	8	4	RLFPYCAFL	RLFLYCAFL	NetMHCpan	37.7	76.9	2.04	367	0.283	384.282	244.224	0.636	85.5	107.49	76.9	37.7	494.435904	831.9744705	402.9489236	661.0738832	M3_p20	1.542857143	1.542857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.297	367	0	0	NA	5qG1.3	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr6	56730679	56730679	A	C	ENSMUST00000031805.10	1	ENSMUSG00000029787	missense	K/T	203	Avl9	ENSMUST00000031805.10:c.608A>C	ENSMUSP00000031805.8:p.Lys203Thr	H-2-Kb	9	11	1	TVLFYISPV	KVLFYISPV	NetMHCpan	77.4	99.7	1.288	81	0.148	167.906	288.749	1.72	213.49	126.28	99.7	77.4	364.0072218	239.9440583	370.0411313	209.5318271	M3_p20	1.657142857	1.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.14	81	0	0	NA	6qB3	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.619929236	sgMsh2	cell line
chr5	135911218	135911218	GC	G	ENSMUST00000055808.5	1	ENSMUSG00000051391	FS	G/X	174	Ywhag	ENSMUST00000055808.5:c.521del	ENSMUSP00000051223.5:p.Gly174AlafsTer38	H-2-Kb	9	13	0	RSTTRFSTM	NA	NetMHC	134.8	NA	NA	49	0.204	291.462	NA	NA	NA	134.8	NA	218.8	NA	382.9217191	NA	364.1245828	M3_p20	-0.385714286	-0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.237	49	0	0	NA	5qG2	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr6	47821489	47821489	G	A	ENSMUST00000058844.5	1	ENSMUSG00000051499	missense	L/F	172	Zfp786	ENSMUST00000058844.5:c.514C>T	ENSMUSP00000057495.5:p.Leu172Phe	H-2-Kb	9	9	3	KVFSSHRTL	KVLSSHRTL	NetMHCpan	155.1	1120.2	7.222	352	0.108	347.637	1276.375	3.672	772.8	184.64	1120.2	155.1	1432.550696	510.6343193	2047.623004	738.3291242	M3_p20	-0.485714286	-0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.124	352	0	0	NA	6qB2.3	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.549080181	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	9	4	8	VLVSYTRLL	VLVSYTRIL	NetMHCpan	118.1	254.3	2.153	170	0.241	338.726	712.479	2.103	683.46	204.18	254.3	118.1	741.4980274	473.271116	959.9530659	622.6586131	M3_p20	0.642857143	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.266	170	0	0	NA	6qB2.1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr5	137758482	137758482	TG	T	ENSMUST00000110985.1	2	ENSMUSG00000029723	FS	L/X	57	Tsc22d4	ENSMUST00000110985.1:c.177del	ENSMUSP00000106613.1:p.Pro60GlnfsTer18	H-2-Kb	9	22	0	VGWTKAFSL	NA	NetMHCpan	103.3	NA	NA	32	0.406	321.493	NA	NA	NA	216.16	NA	103.3	NA	472.1826226	NA	426.8251484	M3_p20	0.3	0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.385	32	0	0	NA	5qG2	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr6	67486278	67486278	C	A	ENSMUST00000118364.1	1	ENSMUSG00000049093	missense	R/M	77	Il23r	ENSMUST00000118364.1:c.230G>T	ENSMUSP00000113342.1:p.Arg77Met	H-2-Kb	9	11	1	MNLYFYKNG	RNLYFYKNG	SMM	353.273	671.599	1.901	210	0.2	359.984	705.454	1.96	739.31	362.49	1520.2	781.2	671.5989369	353.2726369	665.6562285	357.4785601	M3_p20	-0.542857143	-0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.197	210	0	0	NA	6qC1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.872328997	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	9	6	6	VSYTRLLVA	VSYTRILVA	NetMHCpan	129.9	163.6	1.259	170	0.241	176.155	270.535	1.536	712.71	415.25	163.6	129.9	323.6756285	203.287184	217.3952246	149.021867	M3_p20	1.014285714	1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.266	170	0	0	NA	6qB2.1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr6	57210453	57210453	T	C	ENSMUST00000227421.1	NA	ENSMUSG00000064259	missense	M/T	199	Vmn1r13	ENSMUST00000227421.1:c.596T>C	ENSMUSP00000154429.1:p.Met199Thr	H-2-Kb	9	8	4	SAYTVIILF	SAYMVIILF	SMM	379.411	316.308	0.834	1301	0.131	425.127	352.082	0.828	351.59	425.39	1259.3	742	316.3078717	379.4110717	352.5737704	424.864065	M3_p20	2.542857143	2.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.134	1301	0	0	NA	6qB3	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.593360841	sgMsh2	cell line
chr7	18482720	18482720	A	G	ENSMUST00000094798.4	1	ENSMUSG00000070799	missense	F/L	65	Psg26	ENSMUST00000094798.4:c.193T>C	ENSMUSP00000092392.3:p.Phe65Leu	H-2-Db	9	3	9	NMPENLLVL	NMPENLLVF	NetMHC	51.07	357.1	6.992	466	0.281	252.535	664.037	2.629	357.1	51.07	1210.5	348.7	578.9219283	219.5937625	749.1520978	285.476261	M3_p20	1	1	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.274	466	0	0	NA	7qA3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr7	4628730	4628730	G	A	ENSMUST00000055085.7	1	ENSMUSG00000045282	missense	H/Y	108	Tmem86b	ENSMUST00000055085.7:c.322C>T	ENSMUSP00000060237.6:p.His108Tyr	H-2-Kb	8	5	7	AAFSVAYL	AAFSVAHL	NetMHC	14.01	11.96	0.854	55	0.218	31.802	29.743	0.935	11.96	14.01	19.7	24	41.47056956	39.60408646	39.78689062	40.90157201	M3_p20	1.757142857	1.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.255	55	0	0	NA	7qA1	chr7-3489139-7297085	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr7	19643130	19643130	A	C	ENSMUST00000055242.10	1	ENSMUSG00000002981	missense	F/V	170	Clptm1	ENSMUST00000055242.10:c.508T>G	ENSMUSP00000051293.9:p.Phe170Val	H-2-Kb	8	4	8	SIYIHVYV	SIYIHVYF	NetMHC	15.47	62.57	4.045	169	0.219	41.881	121.629	2.904	62.57	15.47	80.8	57.4	162.4575876	35.70590129	166.6249377	48.05515695	M3_p20	1.657142857	1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.222	169	0	0	NA	7qA3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	0.983030646	sgMsh2	cell line
chr7	4771071	4771071	GA	G	ENSMUST00000174409.1	5	ENSMUSG00000092518	FS	F/X	14	Fam71e2	ENSMUST00000174409.1:c.41del	ENSMUSP00000133885.2:p.Phe14SerfsTer43	H-2-Kb	8	5	7	RLWRFFSL	RLWRFFFP	NetMHCpan	40	3409.1	85.227	23	0.217	45.019	2301.187	51.116	7935.2	49.79	3409.1	40	1193.273511	57.90819124	958.826437	40.2476011	M3_p20	1	1	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2174	23	0	0	NA	7qA1	chr7-3489139-7297085	4	2	2	0.91	4.029540036	NA	1	0.962661543	sgMsh2	cell line
chr6	141532679	141532679	A	G	ENSMUST00000032362.11	1	ENSMUSG00000030235	missense	K/R	56	Slco1c1	ENSMUST00000032362.11:c.167A>G	ENSMUSP00000032362.9:p.Lys56Arg	H-2-Kb	8	4	8	LSFVYFAR	LSFVYFAK	NetMHC	71.6	273.33	3.817	185	0.157	97.337	165.283	1.698	273.33	71.6	241.7	126.8	88.86689373	86.84403626	56.4598864	107.830098	M3_p20	0.714285714	1.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.166	185	0	0	NA	6qG2	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.735058952	sgMsh2	cell line
chr7	4628730	4628730	G	A	ENSMUST00000055085.7	1	ENSMUSG00000045282	missense	H/Y	108	Tmem86b	ENSMUST00000055085.7:c.322C>T	ENSMUSP00000060237.6:p.His108Tyr	H-2-Kb	8	9	3	VAYLFYLG	VAHLFYLG	SMM	25.807	303.907	11.776	55	0.218	59.375	717.408	12.083	2140.81	77.28	1012.4	95.7	303.9065077	25.80714726	422.4156501	41.47056956	M3_p20	1.314285714	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.255	55	0	0	NA	7qA1	chr7-3489139-7297085	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr6	141532679	141532679	A	G	ENSMUST00000032362.11	1	ENSMUSG00000030235	missense	K/R	56	Slco1c1	ENSMUST00000032362.11:c.167A>G	ENSMUSP00000032362.9:p.Lys56Arg	H-2-Kb	8	5	7	SFVYFARA	SFVYFAKA	NetMHC	104.42	421.4	4.036	185	0.157	172.62	538.576	3.12	421.4	104.42	215.7	105.5	804.8964279	281.6696149	655.752568	239.7397234	M3_p20	1.085714286	1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.166	185	0	0	NA	6qG2	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.735058952	sgMsh2	cell line
chr6	141532679	141532679	A	G	ENSMUST00000032362.11	1	ENSMUSG00000030235	missense	K/R	56	Slco1c1	ENSMUST00000032362.11:c.167A>G	ENSMUSP00000032362.9:p.Lys56Arg	H-2-Kb	8	6	6	FVYFARAL	FVYFAKAL	NetMHCpan	53.9	100.9	1.872	185	0.157	100.957	211.274	2.093	281	106.91	100.9	53.9	196.218522	95.00358634	226.3288934	123.2366829	M3_p20	1.228571429	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.166	185	0	0	NA	6qG2	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.735058952	sgMsh2	cell line
chr6	149166910	149166910	T	C	ENSMUST00000111535.7	5	ENSMUSG00000068250	missense	N/S	200	Amn1	ENSMUST00000111535.7:c.599A>G	ENSMUSP00000107160.1:p.Asn200Ser	H-2-Kb	8	11	1	SMRYCINL	NMRYCINL	NetMHCpan	101.1	516.9	5.113	152	0.191	283.649	1809.961	6.381	960.79	147.79	516.9	101.1	2665.262568	419.5077612	2659.132635	468.5328006	M3_p20	0.485714286	0.485714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.218	152	0	0	NA	6qG3	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	sgMsh2	cell line
chr6	124061284	124061284	C	T	ENSMUST00000032238.4	1	ENSMUSG00000096630	missense	A/V	606	Vmn2r26	ENSMUST00000032238.4:c.1817C>T	ENSMUSP00000032238.3:p.Ala606Val	H-2-Kb	8	10	2	SVFSAMIL	SAFSAMIL	NetMHCpan	95.4	113.7	1.192	372	0.156	207.424	182.361	0.879	129.9	176.21	113.7	95.4	234.8226582	238.6382195	365.3759857	337.8625068	M3_p20	2.6	2.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.158	372	0	0	NA	6qF2	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.699634424	sgMsh2	cell line
chr6	125980155	125980155	A	G	ENSMUST00000160496.7	1	ENSMUSG00000038115	missense	K/R	629	Ano2	ENSMUST00000160496.7:c.1886A>G	ENSMUSP00000125303.1:p.Lys629Arg	H-2-Kb	8	6	6	KAFLLRFV	KAFLLKFV	NetMHCpan	272.4	547.6	2.01	445	0.173	351.17	682.716	1.944	1229.78	480.77	547.6	272.4	681.9303192	330.1718172	683.502331	372.1688324	M3_p20	2.1	2.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.18	445	0	0	NA	6qF3	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.797051875	sgMsh2	cell line
chr6	123704621	123704621	A	T	ENSMUST00000172391.3	5	ENSMUSG00000091620	missense	I/F	163	Vmn2r23	ENSMUST00000172391.3:c.487A>T	ENSMUSP00000126682.2:p.Ile163Phe	H-2-Kb	8	7	5	QISQFLSL	QISQILSL	SMM	366.218	11554.203	31.55	632	0.182	483.614	12379.626	25.598	14348.38	566.45	6784.1	439.1	11554.20317	366.2182643	13205.04848	528.128981	M3_p20	1.4	1.4	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.179	632	0	0	NA	6qF2	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.792623809	sgMsh2	cell line
chr6	72515320	72515320	A	G	ENSMUST00000162561.8	1	ENSMUSG00000052631	missense	V/A	181	Sh2d6	ENSMUST00000162561.8:c.542T>C	ENSMUSP00000124673.2:p.Val181Ala	H-2-Kb	8	5	7	QPFTLAAL	QPFTLAVL	SMM	136.691	321.914	2.355	103	0.107	392.013	1659.23	4.233	2868.95	584.16	4165.5	2841.1	321.9141004	136.691025	449.5106648	199.8664966	M3_p20	1.671428571	1.671428571	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.119	103	0	0	NA	6qC1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.526939851	sgMsh2	cell line
chr6	149166910	149166910	T	C	ENSMUST00000111535.7	5	ENSMUSG00000068250	missense	N/S	200	Amn1	ENSMUST00000111535.7:c.599A>G	ENSMUSP00000107160.1:p.Asn200Ser	H-2-Kb	9	10	2	ISMRYCINL	INMRYCINL	NetMHC	5.23	8.07	1.543	152	0.191	46.523	52.477	1.128	8.07	5.23	6.8	5.9	113.0082111	106.1964502	96.88354023	87.14651012	M3_p20	0.485714286	0.971428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.218	152	0	0	NA	6qG3	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	sgMsh2	cell line
chr6	141532679	141532679	A	G	ENSMUST00000032362.11	1	ENSMUSG00000030235	missense	K/R	56	Slco1c1	ENSMUST00000032362.11:c.167A>G	ENSMUSP00000032362.9:p.Lys56Arg	H-2-Kb	9	4	8	LSFVYFARA	LSFVYFAKA	NetMHC	8.07	18.23	2.259	185	0.157	41.355	63.038	1.524	18.23	8.07	19.6	12.2	162.2220929	88.94263671	106.4755765	70.50988397	M3_p20	1.085714286	1.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.166	185	0	0	NA	6qG2	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.735058952	sgMsh2	cell line
chr7	4628730	4628730	G	A	ENSMUST00000055085.7	1	ENSMUSG00000045282	missense	H/Y	108	Tmem86b	ENSMUST00000055085.7:c.322C>T	ENSMUSP00000060237.6:p.His108Tyr	H-2-Kb	9	9	3	VAYLFYLGA	VAHLFYLGA	NetMHC	8.59	79.22	9.222	55	0.218	20.803	109.661	5.272	79.22	8.59	82.2	17.5	137.1229033	24.10515897	164.1534444	30.21690645	M3_p20	1.314285714	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.255	55	0	0	NA	7qA1	chr7-3489139-7297085	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr6	124061284	124061284	C	T	ENSMUST00000032238.4	1	ENSMUSG00000096630	missense	A/V	606	Vmn2r26	ENSMUST00000032238.4:c.1817C>T	ENSMUSP00000032238.3:p.Ala606Val	H-2-Kb	9	7	5	ISLSVFSAM	ISLSAFSAM	NetMHC	29.67	17.34	0.584	372	0.156	96.824	71.54	0.739	17.34	29.67	28.5	31.8	114.5803119	161.8489924	169.9221522	190.6557905	M3_p20	1.842857143	1.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.158	372	0	0	NA	6qF2	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.699634424	sgMsh2	cell line
chr7	18482720	18482720	A	G	ENSMUST00000094798.4	1	ENSMUSG00000070799	missense	F/L	65	Psg26	ENSMUST00000094798.4:c.193T>C	ENSMUSP00000092392.3:p.Phe65Leu	H-2-Kb	9	9	3	LVLGWYRGM	LVFGWYRGM	NetMHC	86.04	27.38	0.318	466	0.281	190.368	53.845	0.283	27.38	86.04	45.3	209.8	62.38928378	175.0289954	74.17370966	205.7074402	M3_p20	-0.257142857	0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.274	466	0	0	NA	7qA3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr6	141532679	141532679	A	G	ENSMUST00000032362.11	1	ENSMUSG00000030235	missense	K/R	56	Slco1c1	ENSMUST00000032362.11:c.167A>G	ENSMUSP00000032362.9:p.Lys56Arg	H-2-Kb	9	5	7	SFVYFARAL	SFVYFAKAL	NetMHC	90.76	210.98	2.325	185	0.157	303.576	377.92	1.245	210.98	90.76	211.2	119.5	544.6405843	487.6519891	802.1396792	782.0778752	M3_p20	1.228571429	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.166	185	0	0	NA	6qG2	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.735058952	sgMsh2	cell line
chr7	4628730	4628730	G	A	ENSMUST00000055085.7	1	ENSMUSG00000045282	missense	H/Y	108	Tmem86b	ENSMUST00000055085.7:c.322C>T	ENSMUSP00000060237.6:p.His108Tyr	H-2-Kb	9	7	5	FSVAYLFYL	FSVAHLFYL	NetMHC	117.61	191.04	1.624	55	0.218	191.366	229.821	1.201	191.04	117.61	177.5	167.4	268.6024688	215.332707	304.2636004	242.2423104	M3_p20	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.255	55	0	0	NA	7qA1	chr7-3489139-7297085	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr7	4771071	4771071	GA	G	ENSMUST00000174409.1	5	ENSMUSG00000092518	FS	F/X	14	Fam71e2	ENSMUST00000174409.1:c.41del	ENSMUSP00000133885.2:p.Phe14SerfsTer43	H-2-Kb	9	6	6	LWRFFSLRL	LWRFFFPPP	SMM	97.076	105.223	1.084	23	0.217	188.492	1429.566	7.584	2591.06	197.82	2680.5	230.1	105.2228353	97.07558134	268.0711022	179.1636906	M3_p20	0.485714286	1	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2174	23	0	0	NA	7qA1	chr7-3489139-7297085	4	2	2	0.91	4.029540036	NA	1	0.962661543	sgMsh2	cell line
chr6	108399280	108399280	C	T	ENSMUST00000032192.8	1	ENSMUSG00000030102	missense	R/W	1235	Itpr1	ENSMUST00000032192.8:c.3703C>T	ENSMUSP00000032192.6:p.Arg1235Trp	H-2-Kb	9	9	3	IMWLAHEFL	IMRLAHEFL	NetMHCpan	173.3	364.8	2.105	214	0.178	275.443	622.207	2.259	738.74	227.21	364.8	173.3	566.3827268	323.6756285	678.0317017	326.7758854	M3_p20	0.657142857	0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.171	214	0	0	NA	6qE1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.757199282	sgMsh2	cell line
chr6	123704621	123704621	A	T	ENSMUST00000172391.3	5	ENSMUSG00000091620	missense	I/F	163	Vmn2r23	ENSMUST00000172391.3:c.487A>T	ENSMUSP00000126682.2:p.Ile163Phe	H-2-Kb	9	6	6	TQISQFLSL	TQISQILSL	NetMHCpan	172.2	1333.9	7.746	632	0.182	419.276	2121.116	5.059	2185.82	257.64	1333.9	172.2	2056.411387	580.9115347	2350.985768	687.4640623	M3_p20	1.4	1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.179	632	0	0	NA	6qF2	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.792623809	sgMsh2	cell line
chr6	134484391	134484391	T	G	ENSMUST00000032322.14	1	ENSMUSG00000030201	missense	E/A	701	Lrp6	ENSMUST00000032322.14:c.2102A>C	ENSMUSP00000032322.8:p.Glu701Ala	H-2-Kb	9	4	8	SALEHVVAF	SALEHVVEF	NetMHC	346.5	552.55	1.595	294	0.15	444.167	549.223	1.237	552.55	346.5	572.2	399.4	545.8961105	515.3591605	539.8212792	488.9337312	M3_p20	1.442857143	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.149	294	0	0	NA	6qG1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.65978183	sgMsh2	cell line
chr6	141250253	141250253	G	A	ENSMUST00000043259.9	1	ENSMUSG00000041741	missense	A/T	222	Pde3a	ENSMUST00000043259.9:c.664G>A	ENSMUSP00000038749.7:p.Ala222Thr	H-2-Kb	9	4	8	TSVLRTVTL	TSVLRTVAL	SMMPMBEC	246.178	228.691	0.929	23	0.391	305.91	282.305	0.923	277.11	359.5	287.5	302	291.8166046	309.8203926	228.6914879	246.1784313	M3_p20	1.442857143	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.429	23	0	0	NA	6qG2	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	3	1	sgMsh2	cell line
chr7	10100105	10100105	A	C	ENSMUST00000094863.5	5	ENSMUSG00000058685	missense	N/K	335	Vmn2r51	ENSMUST00000094863.5:c.1005T>G	ENSMUSP00000092459.4:p.Asn335Lys	H-2-Kb	9	7	5	SGFKKFVQT	SGFKNFVQT	NetMHCpan	246.4	610.6	2.478	517	0.101	341.905	660.005	1.93	709.41	399.2	610.6	246.4	991.0829389	500.1612019	593.2667381	284.6098982	M3_p20	-0.314285714	0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.096	517	0	0	NA	7qA1	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	0.425094333	sgMsh2	cell line
chr7	6570449	6570449	T	C	ENSMUST00000219278.1	5	ENSMUSG00000056696	missense	F/L	153	Olfr1350	ENSMUST00000219278.1:c.457T>C	ENSMUSP00000151318.1:p.Phe153Leu	H-2-Kb	9	3	9	VAWVSGLLL	VAWVSGLLF	NetMHCpan	348.1	1024.4	2.943	324	0.287	393.752	708.79	1.8	668.98	403.7	1024.4	348.1	647.3065476	383.8044448	748.6003055	432.7628777	M3_p20	1.928571429	1.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.299	324	0	0	NA	7qA1	chr7-3489139-7297085	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr7	4628730	4628730	G	A	ENSMUST00000055085.7	1	ENSMUSG00000045282	missense	H/Y	108	Tmem86b	ENSMUST00000055085.7:c.322C>T	ENSMUSP00000060237.6:p.His108Tyr	H-2-Kb	9	10	2	AYLFYLGAF	AHLFYLGAF	SMMPMBEC	401.098	529.968	1.321	55	0.218	478.522	581.999	1.216	521.98	499.84	754.5	1485.8	634.0302809	457.2039776	529.9684305	401.0975415	M3_p20	1.9	1.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.255	55	0	0	NA	7qA1	chr7-3489139-7297085	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr7	6570449	6570449	T	C	ENSMUST00000219278.1	5	ENSMUSG00000056696	missense	F/L	153	Olfr1350	ENSMUST00000219278.1:c.457T>C	ENSMUSP00000151318.1:p.Phe153Leu	H-2-Kb	9	6	6	VSGLLLSTF	VSGLLFSTF	SMM	326.671	146.93	0.45	324	0.287	447.243	166.874	0.373	171.1	513.2	239.6	1562.7	146.9298381	326.6705622	162.6484766	381.2852457	M3_p20	1.757142857	1.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.299	324	0	0	NA	7qA1	chr7-3489139-7297085	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr7	4628730	4628730	G	A	ENSMUST00000055085.7	1	ENSMUSG00000045282	missense	H/Y	108	Tmem86b	ENSMUST00000055085.7:c.322C>T	ENSMUSP00000060237.6:p.His108Tyr	H-2-Kb	10	9	3	VAYLFYLGAF	VAHLFYLGAF	NetMHC	24.17	187.85	7.772	55	0.218	384.486	1494.672	3.887	187.85	24.17	197.7	43.1	3616.845854	964.5616704	2791.643777	725.8719263	M3_p20	1.9	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.255	55	0	0	NA	7qA1	chr7-3489139-7297085	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr7	25272796	25272796	A	G	ENSMUST00000169266.7	1	ENSMUSG00000005442	missense	I/V	651	Cic	ENSMUST00000169266.7:c.1951A>G	ENSMUSP00000132351.1:p.Ile651Val	H-2-Db	10	2	10	FSPINASPVV	FSPINASPVI	NetMHC	14.9	8.41	0.564	31	0.194	465.206	229.143	0.493	8.41	14.9	34.4	92.4	423.8869047	838.0115415	542.8376978	1013.141255	M3_p20	1.257142857	1.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.26	31	0	0	NA	7qA3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr7	103716707	103716707	A	C	ENSMUST00000215723.1	5	ENSMUSG00000094822	missense	I/L	38	Olfr243	ENSMUST00000215723.1:c.112A>C	ENSMUSP00000150329.1:p.Ile38Leu	H-2-Kb	8	8	4	IMYLIALL	IMYIIALL	NetMHC	6.59	7.5	1.138	488	0.143	18.294	22.457	1.228	7.5	6.59	12.5	10.9	39.97053856	33.09329418	32.41455024	25.68857419	M3_p20	2.614285714	2.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.154	488	0	0	NA	7qE3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	0.68192216	sgMsh2	cell line
chr7	27434265	27434265	C	A	ENSMUST00000011895.13	1	ENSMUSG00000011751	missense	D/Y	89	Sptbn4	ENSMUST00000011895.13:c.265G>T	ENSMUSP00000011895.7:p.Asp89Tyr	H-2-Kb	8	5	7	IGDLYAYL	IGDLYADL	NetMHC	13.99	86.99	6.218	59	0.186	21.414	85.734	4.004	86.99	13.99	408.8	46.9	84.47729517	22.84230889	72.56713881	19.98664966	M3_p20	0.414285714	0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.202	59	0	0	NA	7qA3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	0.894469327	sgMsh2	cell line
chr7	41872661	41872661	T	C	ENSMUST00000171671.2	5	ENSMUSG00000090383	missense	I/V	4	Vmn2r58	ENSMUST00000171671.2:c.10A>G	ENSMUSP00000126966.1:p.Ile4Val	H-2-Kb	8	3	2	WVFTFGLL	WIFTFGLL	SMMPMBEC	16.933	12.071	0.713	193	0.233	20.077	14.348	0.715	14.74	18.24	31.9	25.2	13.95532644	21.91492557	12.07090967	16.93323751	M3_p20	2.328571429	2.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	193	0	0	NA	7qB3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr7	80717097	80717097	T	A	ENSMUST00000167377.2	1	ENSMUSG00000030536	missense	I/F	1592	Iqgap1	ENSMUST00000167377.2:c.4774A>T	ENSMUSP00000128278.1:p.Ile1592Phe	H-2-Kb	8	7	5	VIFEFGPT	VIFEIGPT	NetMHC	19.03	1460.12	76.727	195	0.251	28.727	1248.514	43.461	1460.12	19.03	1472.7	69.5	1036.907462	32.86548155	614.8086937	24.58895091	M3_p20	0.557142857	1.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.244	195	0	0	NA	7qD3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr7	80620550	80620550	A	C	ENSMUST00000122255.7	1	ENSMUSG00000030527	missense	S/A	129	Crtc3	ENSMUST00000122255.7:c.385T>G	ENSMUSP00000113540.1:p.Ser129Ala	H-2-Kb	8	7	5	ASYSAQHL	ASYSSQHL	NetMHC	20.45	24.57	1.201	182	0.17	46.405	54.652	1.178	24.57	20.45	46.1	34.5	63.20333573	58.30959165	76.69022289	67.8797134	M3_p20	-0.571428571	-0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.194	182	0	0	NA	7qD3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	0.859044799	sgMsh2	cell line
chr7	104579774	104579774	C	A	ENSMUST00000217466.1	5	ENSMUSG00000073926	missense	L/I	43	Olfr653	ENSMUST00000217466.1:c.127C>A	ENSMUSP00000149192.1:p.Leu43Ile	H-2-Kb	8	7	5	SMYIIALV	SMYILALV	NetMHC	36.14	15.33	0.424	486	0.251	160.928	65.748	0.409	15.33	36.14	41.6	75.4	89.89592386	268.9923939	105.1332282	246.456343	M3_p20	2.771428571	2.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.242	486	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr7	38267472	38267472	T	A	ENSMUST00000032585.7	1	ENSMUSG00000030423	missense	T/S	62	Pop4	ENSMUST00000032585.7:c.184A>T	ENSMUSP00000032585.6:p.Thr62Ser	H-2-Kb	8	6	6	ILEYFSRL	ILEYFTRL	NetMHCpan	33.3	36.2	1.087	66	0.121	58.969	82.764	1.404	77.07	45.87	36.2	33.3	155.5034397	122.9532464	88.45858744	72.06759014	M3_p20	0.042857143	0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.152	66	0	0	NA	7qB3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	0.673066028	sgMsh2	cell line
chr7	56734976	56734976	CT	C	ENSMUST00000068911.12	1	ENSMUSG00000055026	FS	K/X	279	Gabrg3	ENSMUST00000068911.12:c.836del	ENSMUSP00000067632.6:p.Lys279ArgfsTer10	H-2-Kb	8	5	7	VSFWIKRM	VSFWIKKD	NetMHCpan	32.2	11566.3	359.202	139	0.331	88.005	7143.686	81.173	17420.67	52.49	11566.3	32.2	2721.071791	159.8600704	1777.215122	123.5207728	M3_p20	-0.128571429	0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.284	139	0	0	NA	7qB5	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr7	29386096	29386096	A	G	ENSMUST00000085809.10	5	ENSMUSG00000030583	missense	V/A	692	Sipa1l3	ENSMUST00000085809.10:c.2075T>C	ENSMUSP00000082965.4:p.Val692Ala	H-2-Kb	8	7	5	IMFHASTL	IMFHVSTL	NetMHCpan	22.2	20.2	0.91	279	0.269	66.789	50.906	0.762	38.17	52.53	20.2	22.2	63.64144033	81.04757034	63.93519587	81.98605697	M3_p20	0.8	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.273	279	0	0	NA	7qB1	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr7	103561109	103561109	G	A	ENSMUST00000215673.1	5	ENSMUSG00000073947	missense	D/N	211	Olfr615	ENSMUST00000215673.1:c.631G>A	ENSMUSP00000150166.1:p.Asp211Asn	H-2-Kb	8	10	2	VNFLLIAI	VDFLLIAI	NetMHCpan	40	2359.1	58.977	326	0.248	96.14	1509.699	15.703	3768.11	92.57	2359.1	40	660.2980276	99.71029474	655.752568	115.2762924	M3_p20	2.528571429	2.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.251	326	0	0	NA	7qE3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr7	105555462	105555462	AC	A	ENSMUST00000046983.9	1	ENSMUSG00000037049	FS	P/X	183	Smpd1	ENSMUST00000046983.9:c.551del	ENSMUSP00000042187.8:p.Pro184GlnfsTer72	H-2-Kb	8	47	0	VQIHFAAA	NA	SMMPMBEC	150.918	NA	NA	108	0.25	175.233	NA	NA	NA	165.65	NA	488.7	NA	184.8161845	NA	150.9176382	M3_p20	0.857142857	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.248	108	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr7	105555462	105555462	AC	A	ENSMUST00000046983.9	1	ENSMUSG00000037049	FS	P/X	183	Smpd1	ENSMUST00000046983.9:c.551del	ENSMUSP00000042187.8:p.Pro184GlnfsTer72	H-2-Kb	8	38	0	STWRAQTL	NA	NetMHCpan	140.5	NA	NA	108	0.25	249.349	NA	NA	NA	259.51	NA	140.5	NA	239.1883374	NA	262.2647967	M3_p20	-0.671428571	-0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.248	108	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr7	24566482	24566482	A	G	ENSMUST00000205573.1	1	ENSMUSG00000051768	missense	I/V	197	Xrcc1	ENSMUST00000205573.1:c.589A>G	ENSMUSP00000146105.1:p.Ile197Val	H-2-Kb	8	4	8	GALFFSRV	GALFFSRI	NetMHCpan	124.6	118.2	0.949	153	0.294	263.463	424.193	1.61	478.78	293.72	118.2	124.6	555.5715525	306.013087	369.6068402	233.2061504	M3_p20	1.442857143	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.286	153	0	0	NA	7qA3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr7	38267472	38267472	T	A	ENSMUST00000032585.7	1	ENSMUSG00000030423	missense	T/S	62	Pop4	ENSMUST00000032585.7:c.184A>T	ENSMUSP00000032585.6:p.Thr62Ser	H-2-Kb	8	5	7	VILEYFSR	VILEYFTR	SMM	209.286	253.361	1.211	66	0.121	412.364	591.486	1.434	722.99	456.82	972.2	944.7	253.3611374	209.2859144	459.9811133	367.908651	M3_p20	0.142857143	1.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.152	66	0	0	NA	7qB3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	0.673066028	sgMsh2	cell line
chr7	103561109	103561109	G	A	ENSMUST00000215673.1	5	ENSMUSG00000073947	missense	D/N	211	Olfr615	ENSMUST00000215673.1:c.631G>A	ENSMUSP00000150166.1:p.Asp211Asn	H-2-Kb	8	6	6	FSFGVNFL	FSFGVDFL	SMM	150.571	284.931	1.892	326	0.248	316.091	920.531	2.912	2167.05	614.28	1461.1	439.1	284.9311953	150.5705372	379.9618556	193.0812048	M3_p20	1.271428571	1.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.251	326	0	0	NA	7qE3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr7	103716707	103716707	A	C	ENSMUST00000215723.1	5	ENSMUSG00000094822	missense	I/L	38	Olfr243	ENSMUST00000215723.1:c.112A>C	ENSMUSP00000150329.1:p.Ile38Leu	H-2-Kb	8	4	8	IPFCIMYL	IPFCIMYI	SMM	196.671	1275.675	6.486	488	0.143	358.839	1521.937	4.241	3985.97	809.74	1768.2	520.1	1275.674869	196.6708524	1134.33152	197.5786438	M3_p20	1.8	1.9	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.154	488	0	0	NA	7qE3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	0.68192216	sgMsh2	cell line
chr7	86811337	86811337	G	A	ENSMUST00000164996.1	5	ENSMUSG00000090949	missense	V/I	624	Vmn2r77	ENSMUST00000164996.1:c.1870G>A	ENSMUSP00000129540.1:p.Val624Ile	H-2-Kb	8	6	6	ETLSYILL	ETLSYVLL	SMMPMBEC	299.737	258.071	0.861	592	0.209	438.719	380.319	0.867	864.89	988.22	444.6	532.5	316.0385059	344.9371732	258.0714726	299.7367541	M3_p20	1.871428571	1.871428571	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.216	592	0	0	NA	7qD3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	0.95646225	sgMsh2	cell line
chr7	105368670	105368670	A	C	ENSMUST00000217827.1	NA	ENSMUSG00000073906	missense	M/L	115	Olfr692	ENSMUST00000217827.1:c.343A>C	ENSMUSP00000151295.1:p.Met115Leu	H-2-Kb	8	9	3	IQLFFVHA	IQMFFVHA	SMMPMBEC	284.931	375.612	1.318	248	0.19	431.481	503.096	1.166	956.99	1001.03	255.3	495.9	630.579721	367.0624846	375.6124682	284.9311953	M3_p20	1.242857143	1.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.215	248	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	0.952034184	sgMsh2	cell line
chr7	105143658	105143658	C	T	ENSMUST00000061284.3	NA	ENSMUSG00000044120	missense	D/N	218	Olfr683	ENSMUST00000061284.3:c.652G>A	ENSMUSP00000060527.3:p.Asp218Asn	H-2-Kb	8	10	2	SNLILIVL	SDLILIVL	SMM	367.062	2430.748	6.622	148	0.203	476.43	6449.731	13.538	17044.98	1011.54	10030.4	448.5	2430.748352	367.0624846	2869.06244	504.3592613	M3_p20	3.014285714	3.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.212	148	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	0.938749986	sgMsh2	cell line
chr7	38267472	38267472	T	A	ENSMUST00000032585.7	1	ENSMUSG00000030423	missense	T/S	62	Pop4	ENSMUST00000032585.7:c.184A>T	ENSMUSP00000032585.6:p.Thr62Ser	H-2-Kb	9	5	7	VILEYFSRL	VILEYFTRL	NetMHC	3.73	4.56	1.223	66	0.121	11.527	13.92	1.208	4.56	3.73	4.6	4.3	23.39429705	18.75469475	23.24074256	20.19528563	M3_p20	0.042857143	1.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.152	66	0	0	NA	7qB3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	0.673066028	sgMsh2	cell line
chr7	86811337	86811337	G	A	ENSMUST00000164996.1	5	ENSMUSG00000090949	missense	V/I	624	Vmn2r77	ENSMUST00000164996.1:c.1870G>A	ENSMUSP00000129540.1:p.Val624Ile	H-2-Kb	9	8	4	LSYILLTSL	LSYVLLTSL	NetMHCpan	26.5	23.3	0.879	592	0.209	55.636	50.423	0.906	24.09	28.24	23.3	26.5	76.75558746	92.92017092	84.382036	83.03286055	M3_p20	1.871428571	1.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.216	592	0	0	NA	7qD3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	0.95646225	sgMsh2	cell line
chr7	103561109	103561109	G	A	ENSMUST00000215673.1	5	ENSMUSG00000073947	missense	D/N	211	Olfr615	ENSMUST00000215673.1:c.631G>A	ENSMUSP00000150166.1:p.Asp211Asn	H-2-Kb	9	4	8	VIFSFGVNF	VIFSFGVDF	NetMHCpan	42.3	148.3	3.506	326	0.248	60.077	160.513	2.672	163.95	45.49	148.3	42.3	157.0760603	74.66378462	165.6723376	97.55510484	M3_p20	1.128571429	2.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.251	326	0	0	NA	7qE3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr7	103418304	103418304	A	G	ENSMUST00000079348.3	1	ENSMUSG00000058976	missense	S/G	269	Usp17lc	ENSMUST00000079348.3:c.805A>G	ENSMUSP00000078323.3:p.Ser269Gly	H-2-Kb	9	10	2	VGYPEFLDL	VSYPEFLDL	NetMHCpan	39.3	16.9	0.43	618	0.244	113.749	40.856	0.359	20.32	61.06	16.9	39.3	61.39174812	176.2422384	62.84200023	166.4370463	M3_p20	0.071428571	0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.239	618	0	0	NA	7qE3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr7	104084873	104084873	G	A	ENSMUST00000057104.6	NA	ENSMUSG00000051340	missense	S/F	69	Olfr645	ENSMUST00000057104.6:c.206C>T	ENSMUSP00000062821.3:p.Ser69Phe	H-2-Kb	9	7	5	LSLLFVNDL	LSLLSVNDL	NetMHC	62.61	2365.54	37.782	227	0.256	209.242	1943.236	9.287	2365.54	62.61	2848.4	144.8	1520.932709	297.9270937	1291.962773	273.6843727	M3_p20	1.628571429	2.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	227	0	0	NA	7qE3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr7	29386096	29386096	A	G	ENSMUST00000085809.10	5	ENSMUSG00000030583	missense	V/A	692	Sipa1l3	ENSMUST00000085809.10:c.2075T>C	ENSMUSP00000082965.4:p.Val692Ala	H-2-Kb	9	7	5	IMFHASTLL	IMFHVSTLL	NetMHCpan	34.3	42.3	1.233	279	0.269	73.196	96.94	1.324	95	76.39	42.3	34.3	98.88035114	70.00192775	121.4087534	108.2056654	M3_p20	1.071428571	1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.273	279	0	0	NA	7qB1	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr7	86230157	86230157	G	T	ENSMUST00000165771.1	5	ENSMUSG00000091239	missense	L/I	312	Vmn2r76	ENSMUST00000165771.1:c.934C>A	ENSMUSP00000127309.1:p.Leu312Ile	H-2-Kb	9	11	1	IFNSFHGTL	LFNSFHGTL	NetMHC	90.6	323.06	3.566	202	0.198	213.074	517.132	2.427	323.06	90.6	536.4	171.4	497.86317	254.7475407	565.2622723	289.2344371	M3_p20	-0.285714286	0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	202	0	0	NA	7qD3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	0.885613195	sgMsh2	cell line
chr7	41872661	41872661	T	C	ENSMUST00000171671.2	5	ENSMUSG00000090383	missense	I/V	4	Vmn2r58	ENSMUST00000171671.2:c.10A>G	ENSMUSP00000126966.1:p.Ile4Val	H-2-Kb	9	1	4	MFWVFTFGL	MFWIFTFGL	NetMHC	111.05	130.99	1.18	193	0.233	219.588	235.322	1.072	130.99	111.05	717.3	597.1	205.6411387	169.8673846	265.0025177	269.3084622	M3_p20	1.657142857	1.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	193	0	0	NA	7qB3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr7	105368670	105368670	A	C	ENSMUST00000217827.1	NA	ENSMUSG00000073906	missense	M/L	115	Olfr692	ENSMUST00000217827.1:c.343A>C	ENSMUSP00000151295.1:p.Met115Leu	H-2-Kb	9	9	3	IQLFFVHAL	IQMFFVHAL	NetMHCpan	43.2	24.8	0.574	248	0.19	275.107	251.953	0.916	112.84	125.35	24.8	43.2	415.0591573	450.9309038	391.0659467	424.864065	M3_p20	2.285714286	2.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.215	248	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	0.952034184	sgMsh2	cell line
chr7	103320651	103320651	GC	G	ENSMUST00000216456.1	5	ENSMUSG00000073952	FS	A/X	80	Olfr597	ENSMUST00000216456.1:c.243del	ENSMUSP00000150238.1:p.Met83CysfsTer18	H-2-Kb	9	14	1	CWPYFGSGL	NA	NetMHC	181.3	NA	NA	364	0.31	475.26	NA	NA	NA	181.3	NA	929.5	NA	258.291432	NA	692.2293355	M3_p20	0.3	0.3	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.315	364	0	0	NA	7qE3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr7	102877647	102877647	T	G	ENSMUST00000098216.1	NA	ENSMUSG00000073965	missense	S/A	176	Olfr568	ENSMUST00000098216.1:c.526T>G	ENSMUSP00000095818.1:p.Ser176Ala	H-2-Kb	9	8	4	LSHAYCYHV	LSHSYCYHV	NetMHC	182.81	126.32	0.691	496	0.254	404.02	295.538	0.731	126.32	182.81	205.5	217.5	385.5760057	636.9568317	462.6472659	590.540925	M3_p20	-0.071428571	0.214285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe	3	0.251	496	0	0	NA	7qE3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr7	103470347	103470347	T	A	ENSMUST00000213546.2	NA	ENSMUSG00000073948	missense	Y/N	103	Olfr608	ENSMUST00000213546.2:c.307T>A	ENSMUSP00000150595.1:p.Tyr103Asn	H-2-Kb	9	8	4	TQMNFIHTL	TQMYFIHTL	NetMHCpan	63.2	43.4	0.687	402	0.269	469.385	394.17	0.84	228.44	190.17	43.4	63.2	559.8993973	800.0368662	602.9065471	748.6003055	M3_p20	0.8	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.275	402	0	0	NA	7qE3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr7	64318302	64318302	T	C	ENSMUST00000032736.10	1	ENSMUSG00000030522	missense	M/T	293	Mtmr10	ENSMUST00000032736.10:c.878T>C	ENSMUSP00000032736.4:p.Met293Thr	H-2-Kb	9	6	6	SALVRTALI	SALVRMALI	NetMHC	196.41	93.2	0.475	191	0.178	265.638	197.08	0.742	93.2	196.41	193.2	363	200.9601749	246.6664026	201.0249672	284.6098982	M3_p20	1.842857143	1.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.191	191	0	0	NA	7qC	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	0.845760601	sgMsh2	cell line
chr7	41872661	41872661	T	C	ENSMUST00000171671.2	5	ENSMUSG00000090383	missense	I/V	4	Vmn2r58	ENSMUST00000171671.2:c.10A>G	ENSMUSP00000126966.1:p.Ile4Val	H-2-Kb	9	2	3	FWVFTFGLL	FWIFTFGLL	SMM	188.847	129.155	0.684	193	0.233	303.148	213.145	0.703	203.83	283.26	477.7	743.9	129.1546361	188.8469608	222.4590099	323.0353127	M3_p20	2.328571429	2.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	193	0	0	NA	7qB3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr7	102877647	102877647	T	G	ENSMUST00000098216.1	NA	ENSMUSG00000073965	missense	S/A	176	Olfr568	ENSMUST00000098216.1:c.526T>G	ENSMUSP00000095818.1:p.Ser176Ala	H-2-Kb	9	10	2	HAYCYHVDV	HSYCYHVDV	NetMHCpan	221.9	122.4	0.552	496	0.254	291.336	184.978	0.635	148.52	303.9	122.4	221.9	306.2739079	371.6293451	221.4369036	278.7725451	M3_p20	0.228571429	0.228571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe	3	0.251	496	0	0	NA	7qE3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr7	103716707	103716707	A	C	ENSMUST00000215723.1	5	ENSMUSG00000094822	missense	I/L	38	Olfr243	ENSMUST00000215723.1:c.112A>C	ENSMUSP00000150329.1:p.Ile38Leu	H-2-Kb	9	7	5	CIMYLIALL	CIMYIIALL	NetMHC	393.38	822.57	2.091	488	0.143	498.487	900.185	1.806	822.57	393.38	1161.1	703.3	677.8131653	400.9682638	977.7999259	596.0051329	M3_p20	2.614285714	2.714285714	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.154	488	0	0	NA	7qE3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	0.68192216	sgMsh2	cell line
chr7	103320651	103320651	GC	G	ENSMUST00000216456.1	5	ENSMUSG00000073952	FS	A/X	80	Olfr597	ENSMUST00000216456.1:c.243del	ENSMUSP00000150238.1:p.Met83CysfsTer18	H-2-Kb	9	10	5	IAPKCWPYF	IAPKMLAIF	NetMHC	406.13	600.96	1.48	364	0.31	476.17	513.348	1.078	600.96	406.13	431.2	493.7	461.4344339	485.4114317	565.2622723	466.9280884	M3_p20	-0.571428571	0.114285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.315	364	0	0	NA	7qE3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr7	27434265	27434265	C	A	ENSMUST00000011895.13	1	ENSMUSG00000011751	missense	D/Y	89	Sptbn4	ENSMUST00000011895.13:c.265G>T	ENSMUSP00000011895.7:p.Asp89Tyr	H-2-Kb	9	9	3	YAYLRDGFV	YADLRDGFV	SMMPMBEC	300.781	3691.901	12.274	59	0.186	367.41	8365.849	22.77	12284.26	414.85	15096.3	552.7	4447.438999	319.9705442	3691.900603	300.7807237	M3_p20	0.157142857	0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.202	59	0	0	NA	7qA3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	0.894469327	sgMsh2	cell line
chr7	86585643	86585643	G	A	ENSMUST00000215365.1	3	ENSMUSG00000059319	missense	A/T	123	Olfr295	ENSMUST00000215365.1:c.367G>A	ENSMUSP00000150377.1:p.Ala123Thr	H-2-Kb	9	4	8	MAQDRYVTI	MAQDRYVAI	SMMPMBEC	399.255	370.894	0.929	510	0.22	423.855	403.247	0.951	327.37	419.11	435.6	428.6	454.0566075	482.0698829	370.8941642	399.2546657	M3_p20	-0.685714286	-0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.223	510	0	0	NA	7qD3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	0.987458712	sgMsh2	cell line
chr7	104084873	104084873	G	A	ENSMUST00000057104.6	NA	ENSMUSG00000051340	missense	S/F	69	Olfr645	ENSMUST00000057104.6:c.206C>T	ENSMUSP00000062821.3:p.Ser69Phe	H-2-Kb	9	3	9	MYYFLSLLF	MYYFLSLLS	SMM	232.333	518.931	2.234	227	0.256	395.348	2593.63	6.56	4591.25	443.76	4080	1019.9	518.9314595	232.3325184	1107.260991	346.9365057	M3_p20	2.128571429	2.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	227	0	0	NA	7qE3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr7	45897436	45897436	C	T	ENSMUST00000069772.15	1	ENSMUSG00000002781	missense	L/F	9	Tmem143	ENSMUST00000069772.15:c.25C>T	ENSMUSP00000070405.7:p.Leu9Phe	H-2-Kb	9	1	9	MTVARWLRF	MTVARWLRL	SMMPMBEC	346.937	200.563	0.578	99	0.162	447.198	172.436	0.386	144.31	476.98	90.6	447.6	264.9171047	446.7967444	200.5626226	346.9365057	M3_p20	0.385714286	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.175	99	0	0	NA	7qB3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	0.774911545	sgMsh2	cell line
chr7	45091511	45091511	C	A	ENSMUST00000019683.10	1	ENSMUSG00000019539	missense	A/S	58	Rcn3	ENSMUST00000019683.10:c.172G>T	ENSMUSP00000019683.3:p.Ala58Ser	H-2-Kb	9	5	7	FQYDHESFL	FQYDHEAFL	SMM	229.145	213.85	0.933	57	0.123	356.326	221.271	0.621	196.89	536.95	277.2	442.1	213.850367	229.1447967	228.6914879	270.5515336	M3_p20	-0.814285714	-0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.139	57	0	0	NA	7qB3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	0.61550117	sgMsh2	cell line
chr7	62377423	62377423	C	T	ENSMUST00000080403.6	NA	ENSMUSG00000056972	missense	P/L	25	Magel2	ENSMUST00000080403.6:c.74C>T	ENSMUSP00000079265.5:p.Pro25Leu	H-2-Kb	9	6	6	AVHSRLTVL	AVHSRPTVL	SMM	323.676	762.272	2.355	30	0.233	456.331	1547.221	3.391	2260.28	563.32	2655.2	676.6	762.2720572	323.6756285	834.1612282	349.3413547	M3_p20	0.371428571	0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.236	30	0	0	NA	7qC	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr7	103470347	103470347	T	A	ENSMUST00000213546.2	NA	ENSMUSG00000073948	missense	Y/N	103	Olfr608	ENSMUST00000213546.2:c.307T>A	ENSMUSP00000150595.1:p.Tyr103Asn	H-2-Kb	9	10	2	MNFIHTLCI	MYFIHTLCI	NetMHCpan	133.6	738.3	5.526	402	0.269	337.578	698.82	2.07	1791.99	738.55	738.3	133.6	659.3408748	375.0679891	523.901932	300.0889473	M3_p20	2.028571429	2.028571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.275	402	0	0	NA	7qE3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr7	103561109	103561109	G	A	ENSMUST00000215673.1	5	ENSMUSG00000073947	missense	D/N	211	Olfr615	ENSMUST00000215673.1:c.631G>A	ENSMUSP00000150166.1:p.Asp211Asn	H-2-Kb	10	4	8	VIFSFGVNFL	VIFSFGVDFL	NetMHCpan	44.1	159.8	3.624	326	0.248	416.76	499.24	1.198	247.1	68.17	159.8	44.1	964.5616704	1110.017945	751.3806385	765.3498475	M3_p20	1.271428571	2.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.251	326	0	0	NA	7qE3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr7	112894458	112894458	A	G	ENSMUST00000059768.16	1	ENSMUSG00000055320	missense	I/M	397	Tead1	ENSMUST00000059768.16:c.1191A>G	ENSMUSP00000060671.9:p.Ile397Met	H-2-Db	9	4	8	SVLENFTML	SVLENFTIL	NetMHCpan	56.2	25.6	0.456	150	0.18	93.041	86.275	0.927	63.25	79.76	25.6	56.2	109.2999592	106.3212319	142.7479894	150.5116095	M3_p20	0.657142857	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.221	150	0	0	NA	7qF1	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	0.97860258	sgMsh2	cell line
chr7	140336044	140336044	C	A	ENSMUST00000214858.1	5	ENSMUSG00000062782	missense	L/M	61	Olfr527	ENSMUST00000214858.1:c.181C>A	ENSMUSP00000149080.1:p.Leu61Met	H-2-Db	9	9	3	FFMVNLAIV	FFLVNLAIV	SMM	105.833	95.856	0.906	484	0.283	165.454	168.878	1.021	197.29	176.89	1124.6	642.8	95.85615401	105.8327302	140.4656069	154.0174753	M3_p20	2.414285714	2.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.281	484	0	0	NA	7qF4	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr7	108066532	108066532	T	C	ENSMUST00000071658.2	NA	ENSMUSG00000063120	missense	M/V	89	Olfr480	ENSMUST00000071658.2:c.265A>G	ENSMUSP00000071583.2:p.Met89Val	H-2-Kb	8	11	1	VYLFLSHL	MYLFLSHL	NetMHCpan	13.1	28.9	2.206	314	0.245	134.327	287.934	2.144	52.58	23.33	28.9	13.1	523.2870654	245.323979	556.8522772	262.8693795	M3_p20	1.271428571	1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.24	314	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr7	123494884	123494884	CT	C	ENSMUST00000042470.13	1	ENSMUSG00000030757	FS	S/X	236	Zkscan2	ENSMUST00000042470.13:c.706del	ENSMUSP00000041821.7:p.Ser236ValfsTer36	H-2-Kb	8	4	8	RSFSYKKV	RSFSYKKS	NetMHC	30.43	2776.72	91.249	103	0.272	51.42	1136.705	22.106	2776.72	30.43	1968.1	41.5	268.9923939	72.56713881	305.3092764	61.33946729	M3_p20	-0.528571429	-0.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.245	103	0	0	NA	7qF3	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr7	121500719	121500719	T	C	ENSMUST00000084628.4	1	ENSMUSG00000046321	missense	Y/H	263	Hs3st2	ENSMUST00000084628.4:c.787T>C	ENSMUSP00000081678.3:p.Tyr263His	H-2-Kb	8	7	5	SWLRHFPL	SWLRYFPL	NetMHC	37.55	13.18	0.351	119	0.176	82.172	20.056	0.244	13.18	37.55	43.5	118.3	20.21808416	78.29607656	19.89481935	86.04784535	M3_p20	0.028571429	0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.184	119	0	0	NA	7qF2	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	0.814764139	sgMsh2	cell line
chr8	3851259	3851259	T	C	ENSMUST00000033888.4	1	ENSMUSG00000040197	missense	S/G	132	Cd209e	ENSMUST00000033888.4:c.394A>G	ENSMUSP00000033888.4:p.Ser132Gly	H-2-Kb	8	10	2	NGYTWMGL	NSYTWMGL	NetMHC	74.4	17.07	0.229	238	0.239	112.328	35.265	0.314	17.07	74.4	26.4	96.5	48.05515695	143.1330745	44.13061706	128.1563117	M3_p20	0.285714286	0.285714286	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.239	238	0	0	NA	8qA1.1	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr7	110265927	110265927	A	C	ENSMUST00000033325.8	1	ENSMUSG00000031015	missense	E/A	245	Swap70	ENSMUST00000033325.8:c.734A>C	ENSMUSP00000033325.7:p.Glu245Ala	H-2-Kb	8	6	6	SYYVSADL	SYYVSEDL	NetMHC	119.01	1764.16	14.824	216	0.208	249.798	1734.611	6.944	1764.16	119.01	1238.9	255.4	1705.061311	244.1968177	1998.664966	275.2580317	M3_p20	0.414285714	0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.216	216	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	0.95646225	sgMsh2	cell line
chr7	140336044	140336044	C	A	ENSMUST00000214858.1	5	ENSMUSG00000062782	missense	L/M	61	Olfr527	ENSMUST00000214858.1:c.181C>A	ENSMUSP00000149080.1:p.Leu61Met	H-2-Kb	8	7	5	MYFFMVNL	MYFFLVNL	NetMHCpan	54.1	64	1.183	484	0.283	88.007	92.533	1.051	151.9	127.61	64	54.1	87.8496428	84.86722465	97.21650414	91.14650073	M3_p20	1.528571429	1.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.281	484	0	0	NA	7qF4	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr7	127905762	127905762	T	C	ENSMUST00000071056.13	1	ENSMUSG00000030802	missense	I/T	130	Bckdk	ENSMUST00000071056.13:c.389T>C	ENSMUSP00000070345.7:p.Ile130Thr	H-2-Kb	8	10	2	YTRAFQKL	YIRAFQKL	NetMHCpan	121.7	137.9	1.133	242	0.227	139.122	142.352	1.023	95.73	131.44	137.9	121.7	146.8047136	146.8047136	188.2521739	180.6092545	M3_p20	-0.6	-0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.211	242	0	0	NA	7qF3	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	0.93432192	sgMsh2	cell line
chr8	15028813	15028813	T	C	ENSMUST00000069399.6	1	ENSMUSG00000055675	missense	S/P	471	Kbtbd11	ENSMUST00000069399.6:c.1411T>C	ENSMUSP00000068321.5:p.Ser471Pro	H-2-Kb	8	9	3	GGPLFYRL	GGSLFYRL	NetMHCpan	129.8	583.8	4.498	39	0.282	159.772	564.616	3.534	1253.3	161.15	583.8	129.8	545.4312289	203.5822922	382.5956254	158.3944645	M3_p20	0.371428571	0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.321	39	0	0	NA	8qA1.1	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr8	70174385	70174385	G	A	ENSMUST00000002413.14	1	ENSMUSG00000002342	missense	R/H	29	Tmem161a	ENSMUST00000002413.14:c.86G>A	ENSMUSP00000002413.8:p.Arg29His	H-2-Kb	8	7	5	CSFAHWLL	CSFARWLL	NetMHCpan	55.4	97.3	1.756	127	0.299	78.662	371.36	4.721	346.68	214.88	97.3	55.4	396.0408646	60.77710368	506.6872779	96.54727043	M3_p20	1.042857143	1.042857143	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.311	127	0	0	NA	8qB3.3	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr8	11518463	11518463	G	A	ENSMUST00000049461.6	1	ENSMUSG00000056228	missense	A/V	365	Cars2	ENSMUST00000049461.6:c.1094C>T	ENSMUSP00000046453.5:p.Ala365Val	H-2-Kb	8	10	2	RVYVKGQL	RAYVKGQL	NetMHC	235.36	208.02	0.884	69	0.217	311.299	309.266	0.993	208.02	235.36	272.8	302.9	425.3436955	432.2549746	345.7323355	319.6980594	M3_p20	0.442857143	0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.255	69	0	0	NA	8qA1.1	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr7	108714066	108714066	C	A	ENSMUST00000074730.3	NA	ENSMUSG00000056946	missense	L/M	238	Olfr512	ENSMUST00000074730.3:c.712C>A	ENSMUSP00000074291.4:p.Leu238Met	H-2-Kb	8	6	6	ILFTIMRM	ILFTILRM	NetMHCpan	74.1	112.6	1.52	442	0.274	290.124	605.685	2.088	729.71	264.21	112.6	74.1	758.1235717	462.1042896	481.6593553	316.0385059	M3_p20	1.385714286	1.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.261	442	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr7	106886521	106886521	G	T	ENSMUST00000213918.1	5	ENSMUSG00000109354	missense	L/I	99	Olfr706	ENSMUST00000213918.1:c.295C>A	ENSMUSP00000150075.1:p.Leu99Ile	H-2-Kb	8	11	1	IQMALALM	LQMALALM	NetMHCpan	225.8	1084.7	4.804	309	0.252	488.486	2680.818	5.488	2769.01	369.2	1084.7	225.8	3653.759857	770.4420888	2592.626764	607.7710368	M3_p20	1.642857143	2.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.246	309	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr7	126998574	126998574	A	G	ENSMUST00000165096.8	1	ENSMUSG00000030681	missense	V/A	124	Mvp	ENSMUST00000165096.8:c.371T>C	ENSMUSP00000127250.2:p.Val124Ala	H-2-Kb	8	5	7	ITPLQVAL	ITPLQVVL	SMM	208.324	490.614	2.355	142	0.176	361.112	827.469	2.291	2006.7	401.05	932.6	459.9	490.6140712	208.324333	722.337231	321.1737185	M3_p20	1.114285714	1.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.167	142	0	0	NA	7qF3	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	0.739487018	sgMsh2	cell line
chr7	112894458	112894458	A	G	ENSMUST00000059768.16	1	ENSMUSG00000055320	missense	I/M	397	Tead1	ENSMUST00000059768.16:c.1191A>G	ENSMUSP00000060671.9:p.Ile397Met	H-2-Kb	8	5	7	VLENFTML	VLENFTIL	SMMPMBEC	161.711	473.958	2.931	150	0.18	278.293	630.111	2.264	1938.31	461.24	683.8	334.9	576.4212727	221.6868845	473.9581548	161.7111628	M3_p20	0.657142857	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.221	150	0	0	NA	7qF1	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	0.97860258	sgMsh2	cell line
chr7	108066532	108066532	T	C	ENSMUST00000071658.2	NA	ENSMUSG00000063120	missense	M/V	89	Olfr480	ENSMUST00000071658.2:c.265A>G	ENSMUSP00000071583.2:p.Met89Val	H-2-Kb	8	8	4	HTPVYLFL	HTPMYLFL	NetMHCpan	245.7	219.6	0.894	314	0.245	262.002	292.515	1.116	407.26	463.94	219.6	245.7	316.0385059	266.5262568	268.9923939	257.4779247	M3_p20	1.571428571	1.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.24	314	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr8	12812332	12812332	A	G	ENSMUST00000091237.11	1	ENSMUSG00000031441	missense	I/M	61	Atp11a	ENSMUST00000091237.11:c.183A>G	ENSMUSP00000088779.5:p.Ile61Met	H-2-Kb	8	8	4	WNFMPKNL	WNFIPKNL	SMMPMBEC	260.459	296.306	1.138	434	0.189	332.995	416.103	1.25	868.92	618.87	535.9	372.4	268.9923939	293.5891489	296.3056959	260.4593785	M3_p20	-0.571428571	-0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.195	434	0	0	NA	8qA1.1	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	0.863472865	sgMsh2	cell line
chr8	71684012	71684012	AG	A	ENSMUST00000051995.13	1	ENSMUSG00000031805	FS	E/X	654	Jak3	ENSMUST00000051995.13:c.1967del	ENSMUSP00000060073.7:p.Gly656ValfsTer10	H-2-Kb	8	13	1	VMGIHLSL	NA	NetMHCpan	418.4	NA	NA	169	0.278	495.285	NA	NA	NA	641.33	NA	418.4	NA	483.8825938	NA	506.6872779	M3_p20	1.371428571	1.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.282	169	0	0	NA	8qB3.3	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr7	127051630	127051630	A	G	ENSMUST00000205424.1	2	ENSMUSG00000049350	missense	V/A	62	Zg16	ENSMUST00000205424.1:c.185T>C	ENSMUSP00000145876.1:p.Val62Ala	H-2-Kb	9	5	7	VNRYYIAGL	VNRYYIVGL	NetMHC	8.72	32.43	3.719	311	0.209	35.986	58.881	1.636	32.43	8.72	19.1	12.8	85.33162183	59.17114865	94.67820161	69.86344547	M3_p20	0.371428571	0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.211	311	0	0	NA	7qF3	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	0.93432192	sgMsh2	cell line
chr7	110265927	110265927	A	C	ENSMUST00000033325.8	1	ENSMUSG00000031015	missense	E/A	245	Swap70	ENSMUST00000033325.8:c.734A>C	ENSMUSP00000033325.7:p.Glu245Ala	H-2-Kb	9	5	7	ISYYVSADL	ISYYVSEDL	NetMHC	15.38	121.04	7.87	216	0.208	76.906	220.722	2.87	121.04	15.38	154.2	25.8	311.2504586	135.2415065	287.2433612	128.0117987	M3_p20	0.414285714	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.216	216	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	0.95646225	sgMsh2	cell line
chr7	108066532	108066532	T	C	ENSMUST00000071658.2	NA	ENSMUSG00000063120	missense	M/V	89	Olfr480	ENSMUST00000071658.2:c.265A>G	ENSMUSP00000071583.2:p.Met89Val	H-2-Kb	9	10	2	PVYLFLSHL	PMYLFLSHL	SMM	27.74	12.797	0.461	314	0.245	31.825	25.891	0.814	28.38	30.85	39.4	32.8	12.79705392	27.74022632	23.40183969	47.56089297	M3_p20	1.271428571	1.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.24	314	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr7	112894458	112894458	A	G	ENSMUST00000059768.16	1	ENSMUSG00000055320	missense	I/M	397	Tead1	ENSMUST00000059768.16:c.1191A>G	ENSMUSP00000060671.9:p.Ile397Met	H-2-Kb	9	4	8	SVLENFTML	SVLENFTIL	NetMHC	37.75	108.04	2.862	150	0.18	129.396	187.961	1.453	108.04	37.75	126.4	65.1	249.5226649	193.6912491	309.920283	217.3952246	M3_p20	0.657142857	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.221	150	0	0	NA	7qF1	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	0.97860258	sgMsh2	cell line
chr8	15028813	15028813	T	C	ENSMUST00000069399.6	1	ENSMUSG00000055675	missense	S/P	471	Kbtbd11	ENSMUST00000069399.6:c.1411T>C	ENSMUSP00000068321.5:p.Ser471Pro	H-2-Kb	9	9	3	GGPLFYRLL	GGSLFYRLL	NetMHC	40.99	339.34	8.279	39	0.282	174.957	460.126	2.63	339.34	40.99	248.6	51.3	580.9115347	298.6138865	664.1252616	401.0975415	M3_p20	0.971428571	0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.321	39	0	0	NA	8qA1.1	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr8	12812332	12812332	A	G	ENSMUST00000091237.11	1	ENSMUSG00000031441	missense	I/M	61	Atp11a	ENSMUST00000091237.11:c.183A>G	ENSMUSP00000088779.5:p.Ile61Met	H-2-Kb	9	3	9	SKYTFWNFM	SKYTFWNFI	NetMHC	57.07	114.61	2.008	434	0.189	94.704	167.079	1.764	114.61	57.07	120.8	76.4	213.3585248	113.0082111	230.8075441	135.2851103	M3_p20	0.157142857	0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.195	434	0	0	NA	8qA1.1	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	0.863472865	sgMsh2	cell line
chr7	118543426	118543426	T	C	ENSMUST00000044195.5	1	ENSMUSG00000042246	missense	S/G	580	Tmc7	ENSMUST00000044195.5:c.1738A>G	ENSMUSP00000046927.4:p.Ser580Gly	H-2-Kb	9	4	8	IFYVKELGL	IFYVKELSL	SMM	58.359	65.48	1.122	189	0.153	68.619	75.602	1.102	72.09	59.39	106.1	128.9	65.48020042	58.35929005	79.11339102	77.84845538	M3_p20	0.385714286	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.161	189	0	0	NA	7qF1	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	0.712918622	sgMsh2	cell line
chr7	140336044	140336044	C	A	ENSMUST00000214858.1	5	ENSMUSG00000062782	missense	L/M	61	Olfr527	ENSMUST00000214858.1:c.181C>A	ENSMUSP00000149080.1:p.Leu61Met	H-2-Kb	9	6	6	PMYFFMVNL	PMYFFLVNL	SMM	27.046	20.659	0.764	484	0.283	58.129	61.772	1.063	94.62	83.88	106.9	97.4	20.65903351	27.04643321	28.92344371	32.3779986	M3_p20	1.528571429	1.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.281	484	0	0	NA	7qF4	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr7	123494884	123494884	CT	C	ENSMUST00000042470.13	1	ENSMUSG00000030757	FS	S/X	236	Zkscan2	ENSMUST00000042470.13:c.706del	ENSMUSP00000041821.7:p.Ser236ValfsTer36	H-2-Kb	9	10	2	KVYSKFRRT	NA	NetMHC	114.02	NA	NA	103	0.272	255.735	NA	NA	NA	114.02	NA	355.4	NA	222.8999649	NA	288.5692163	M3_p20	-1.842857143	-1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.245	103	0	0	NA	7qF3	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr7	117549082	117549082	T	C	ENSMUST00000032892.6	1	ENSMUSG00000030657	missense	F/L	294	Xylt1	ENSMUST00000032892.6:c.880T>C	ENSMUSP00000032892.5:p.Phe294Leu	H-2-Kb	9	3	9	LMPEKVARL	LMPEKVARF	NetMHC	173.46	659.31	3.801	119	0.261	295.639	583.799	1.975	659.31	173.46	988.5	403.9	508.2881677	301.3769268	501.4758232	289.9011913	M3_p20	-0.528571429	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.283	119	0	0	NA	7qF1	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr7	121500719	121500719	T	C	ENSMUST00000084628.4	1	ENSMUSG00000046321	missense	Y/H	263	Hs3st2	ENSMUST00000084628.4:c.787T>C	ENSMUSP00000081678.3:p.Tyr263His	H-2-Kb	9	6	6	ESWLRHFPL	ESWLRYFPL	NetMHCpan	163.3	62.2	0.381	119	0.176	193.474	60.222	0.311	49.75	201.06	62.2	163.3	69.20062231	242.1642333	58.24383998	185.8874201	M3_p20	0.028571429	0.028571429	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.184	119	0	0	NA	7qF2	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	0.814764139	sgMsh2	cell line
chr7	135152261	135152261	C	T	ENSMUST00000084488.4	5	ENSMUSG00000058325	missense	A/V	1589	Dock1	ENSMUST00000084488.4:c.4766C>T	ENSMUSP00000081531.4:p.Ala1589Val	H-2-Kb	9	11	1	VLRPFHERM	ALRPFHERM	NetMHCpan	84.2	315.4	3.746	117	0.325	423.221	1393.102	3.292	1094.79	233.74	315.4	84.2	1897.186388	638.4251688	1691.414308	612.7029904	M3_p20	-1.8	-0.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.319	117	0	0	NA	7qF3	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr7	121500719	121500719	T	C	ENSMUST00000084628.4	1	ENSMUSG00000046321	missense	Y/H	263	Hs3st2	ENSMUST00000084628.4:c.787T>C	ENSMUSP00000081678.3:p.Tyr263His	H-2-Kb	9	7	5	SWLRHFPLA	SWLRYFPLA	SMM	266.14	213.359	0.802	119	0.176	344.75	238.779	0.693	209.94	300.23	264.2	640.1	213.3585248	266.1399065	309.920283	389.2691619	M3_p20	0.414285714	0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.184	119	0	0	NA	7qF2	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	0.814764139	sgMsh2	cell line
chr7	140336044	140336044	C	A	ENSMUST00000214858.1	5	ENSMUSG00000062782	missense	L/M	61	Olfr527	ENSMUST00000214858.1:c.181C>A	ENSMUSP00000149080.1:p.Leu61Met	H-2-Kb	9	4	8	HTPMYFFMV	HTPMYFFLV	NetMHCpan	201.1	175.6	0.873	484	0.283	470.61	422.008	0.897	322.69	307.19	175.6	201.1	521.3267383	634.0302809	641.5787927	693.8250889	M3_p20	1.528571429	1.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.281	484	0	0	NA	7qF4	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr7	128682320	128682320	T	C	ENSMUST00000043138.12	1	ENSMUSG00000042105	missense	Y/H	548	Inpp5f	ENSMUST00000043138.12:c.1642T>C	ENSMUSP00000045910.6:p.Tyr548His	H-2-Kb	9	8	4	ANRHYLSRF	ANRYYLSRF	SMM	213.359	159.628	0.748	396	0.278	273.396	175.803	0.643	148.49	318.1	293.9	583.8	159.628341	213.3585248	191.9773533	228.6914879	M3_p20	-1.1	-1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.288	396	0	0	NA	7qF3	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr7	106753224	106753224	G	A	ENSMUST00000216255.1	5	ENSMUSG00000059087	missense	L/F	55	Olfr698	ENSMUST00000216255.1:c.163C>T	ENSMUSP00000149305.1:p.Leu55Phe	H-2-Kb	9	11	1	FHVPMYLLL	LHVPMYLLL	SMM	364.007	354.087	0.973	374	0.241	437.331	366.81	0.839	843.75	808.39	334.9	438.9	354.0870144	364.0072218	379.5333991	435.7626466	M3_p20	2.085714286	2.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.241	374	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr9	38368241	38368241	C	T	ENSMUST00000052085.1	NA	ENSMUSG00000049864	missense	L/F	232	Olfr250	ENSMUST00000052085.1:c.694C>T	ENSMUSP00000051631.1:p.Leu232Phe	H-2-Db	9	7	5	YALIFVNVI	YALILVNVI	NetMHC	68.36	31.31	0.458	367	0.188	328.506	149.279	0.454	31.31	68.36	145.6	288.4	193.9188379	500.7488954	152.9572264	368.6124504	M3_p20	2.928571429	2.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.198	367	0	0	NA	9qA5.1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	0.876757063	sgMsh2	cell line
chr9	36743507	36743507	A	T	ENSMUST00000120381.8	1	ENSMUSG00000032116	missense	I/N	488	Stt3a	ENSMUST00000120381.8:c.1463T>A	ENSMUSP00000113116.1:p.Ile488Asn	H-2-Db	9	7	5	SSPSNVLSA	SSPSIVLSA	NetMHC	215.14	29006.74	134.827	128	0.273	399.173	26766.18	67.054	29006.74	215.14	9763.2	280	24525.62028	518.3462966	33850.88286	692.7395769	M3_p20	0.442857143	0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.273	128	0	0	NA	9qA4	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr9	39184623	39184623	T	G	ENSMUST00000071617.5	3	ENSMUSG00000094970	missense	I/M	148	Olfr943	ENSMUST00000071617.5:c.444T>G	ENSMUSP00000071545.5:p.Ile148Met	H-2-Db	9	8	4	TSLMLGVYI	TSLILGVYI	NetMHC	237.86	368.7	1.55	550	0.289	315.564	360.381	1.142	368.7	237.86	1437.9	872.3	352.0626876	341.6803474	292.799277	289.4476314	M3_p20	2.357142857	2.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.284	550	0	0	NA	9qA5.1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr8	123200246	123200246	CA	C	ENSMUST00000019422.5	1	ENSMUSG00000019278	FS	N/X	270	Dpep1	ENSMUST00000019422.5:c.809del	ENSMUSP00000019422.4:p.Asn270ThrfsTer55	H-2-Db	9	45	0	IMMVLLCFL	NA	SMM	225.227	NA	NA	124	0.266	296.801	NA	NA	NA	330.23	NA	2081.1	NA	225.2267655	NA	263.3722415	M3_p20	3.257142857	3.257142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.256	124	0	0	NA	8qE1	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr9	42377887	42377887	A	G	ENSMUST00000042190.13	1	ENSMUSG00000037705	missense	C/R	461	Tecta	ENSMUST00000042190.13:c.1381T>C	ENSMUSP00000040262.7:p.Cys461Arg	H-2-Db	9	11	1	RGNYNKNPL	CGNYNKNPL	SMMPMBEC	308.724	530.359	1.718	100	0.24	403.896	622.878	1.542	1012.3	429.68	665.5	809.3	580.2564812	378.111599	530.3590695	308.7237209	M3_p20	-1.928571429	-1.928571429	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.246	100	0	0	NA	9qA5.1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr8	123199101	123199101	A	G	ENSMUST00000019422.5	1	ENSMUSG00000019278	missense	I/M	98	Dpep1	ENSMUST00000019422.5:c.294A>G	ENSMUSP00000019422.4:p.Ile98Met	H-2-Db	9	10	2	RMLEQMDVI	RILEQMDVI	SMMPMBEC	318.105	2210.905	6.95	135	0.281	496.966	3897.91	7.843	10393.67	543.51	4023.4	674.5	3772.419664	450.4224204	2210.904583	318.1046371	M3_p20	0.557142857	0.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.282	135	0	0	NA	8qE1	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr9	21956858	21956858	C	T	ENSMUST00000053583.6	1	ENSMUSG00000051238	missense	A/V	142	Swsap1	ENSMUST00000053583.6:c.425C>T	ENSMUSP00000060331.5:p.Ala142Val	H-2-Db	9	3	9	AALLLDTAV	AALLLDTAA	SMM	205.409	460.914	2.244	72	0.264	431.98	2587.809	5.991	4590.06	611.28	5822.4	1244.9	460.9141064	205.4092515	585.5581095	252.6794949	M3_p20	1.885714286	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.245	72	0	0	NA	9qA3	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr9	7171000	7171000	A	G	ENSMUST00000140466.7	5	ENSMUSG00000047193	missense	Y/H	210	Dync2h1	ENSMUST00000140466.7:c.628T>C	ENSMUSP00000120007.1:p.Tyr210His	H-2-Kb	8	6	6	ISREFHNL	ISREFYNL	NetMHC	4.75	3.13	0.659	380	0.276	5.557	4.132	0.744	3.13	4.75	5.5	8	3.481288376	4.794463315	4.783436356	6.320333573	M3_p20	-1.271428571	-1.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.271	380	0	0	NA	9qA1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr9	27323251	27323251	G	A	ENSMUST00000133213.2	5	ENSMUSG00000034275	missense	G/R	471	Igsf9b	ENSMUST00000133213.2:c.1411G>A	ENSMUSP00000117017.1:p.Gly471Arg	H-2-Kb	8	11	1	RSLQFRAL	GSLQFRAL	NetMHC	6.89	35.54	5.158	164	0.213	12.78	40.039	3.133	35.54	6.89	78.3	23.6	44.53895263	11.79614222	35.46010359	13.76385219	M3_p20	0.485714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.236	164	0	0	NA	9qA4	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr9	14464244	14464244	CT	C	ENSMUST00000058796.6	1	ENSMUSG00000053914	FS	K/X	106	Kdm4d	ENSMUST00000058796.6:c.317del	ENSMUSP00000061632.6:p.Lys106SerfsTer62	H-2-Kb	8	33	0	MSHRFMVL	NA	NetMHC	10.85	NA	NA	124	0.242	15.839	NA	NA	NA	10.85	NA	11.6	NA	20.07890385	NA	21.56453014	M3_p20	0.6	0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.252	124	0	0	NA	9qA2	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr8	105842526	105842526	T	C	ENSMUST00000034365.4	1	ENSMUSG00000031893	missense	F/L	503	Tsnaxip1	ENSMUST00000034365.4:c.1507T>C	ENSMUSP00000034365.4:p.Phe503Leu	H-2-Kb	8	8	4	MNQLYAVL	MNQFYAVL	NetMHC	23.5	46.32	1.971	160	0.225	29.097	39.143	1.345	46.32	23.5	18.5	29.7	31.96980594	28.49311953	46.316955	38.52476516	M3_p20	0.757142857	0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.221	160	0	0	NA	8qD3	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	0.97860258	sgMsh2	cell line
chr9	39819815	39819815	A	G	ENSMUST00000215922.1	3	ENSMUSG00000095774	missense	M/V	59	Olfr970	ENSMUST00000215922.1:c.175A>G	ENSMUSP00000150325.1:p.Met59Val	H-2-Kb	8	11	1	VYYFLSSL	MYYFLSSL	NetMHCpan	10.7	21.8	2.037	486	0.2	46.139	104.061	2.255	83.17	33.7	21.8	10.7	124.9510759	58.5787365	143.7937467	67.8797134	M3_p20	0.885714286	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.211	486	0	0	NA	9qA5.1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	0.93432192	sgMsh2	cell line
chr9	38368241	38368241	C	T	ENSMUST00000052085.1	NA	ENSMUSG00000049864	missense	L/F	232	Olfr250	ENSMUST00000052085.1:c.694C>T	ENSMUSP00000051631.1:p.Leu232Phe	H-2-Kb	8	5	7	SSYALIFV	SSYALILV	NetMHC	35.19	31.57	0.897	367	0.188	70.495	88.305	1.253	31.57	35.19	86.3	100.8	90.31086459	59.94321055	116.0753495	81.04757034	M3_p20	2.142857143	2.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.198	367	0	0	NA	9qA5.1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	0.876757063	sgMsh2	cell line
chr9	38368241	38368241	C	T	ENSMUST00000052085.1	NA	ENSMUSG00000049864	missense	L/F	232	Olfr250	ENSMUST00000052085.1:c.694C>T	ENSMUSP00000051631.1:p.Leu232Phe	H-2-Kb	8	7	5	YALIFVNV	YALILVNV	NetMHC	39.78	1223.77	30.763	367	0.188	90.091	1140.658	12.661	1223.77	39.78	1212.9	90.7	943.4958625	89.4828896	1068.415057	100.1705365	M3_p20	2.542857143	2.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.198	367	0	0	NA	9qA5.1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	0.876757063	sgMsh2	cell line
chr9	44333095	44333095	A	C	ENSMUST00000054708.4	1	ENSMUSG00000032123	missense	Q/H	402	Dpagt1	ENSMUST00000054708.4:c.1206A>C	ENSMUSP00000056282.3:p.Gln402His	H-2-Kb	8	8	6	FSIRYHLV	FSIRYQLV	NetMHC	46.29	25.9	0.56	232	0.228	72.129	87.371	1.211	25.9	46.29	67.9	59	106.8415057	85.25895396	121.2662646	89.07175307	M3_p20	0.385714286	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.245	232	0	0	NA	9qA5.2	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr9	38430465	38430465	A	T	ENSMUST00000216644.1	5	ENSMUSG00000052058	missense	Y/F	61	Olfr901	ENSMUST00000216644.1:c.182A>T	ENSMUSP00000150506.1:p.Tyr61Phe	H-2-Kb	8	10	2	MFYFLFNL	MYYFLFNL	SMM	13.764	50.786	3.69	563	0.261	36.424	58.082	1.595	83.97	53.09	54.4	63.9	50.78553127	13.76385219	61.76465217	19.75786438	M3_p20	1.6	1.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.265	563	0	0	NA	9qA5.1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr8	123200246	123200246	CA	C	ENSMUST00000019422.5	1	ENSMUSG00000019278	FS	N/X	270	Dpep1	ENSMUST00000019422.5:c.809del	ENSMUSP00000019422.4:p.Asn270ThrfsTer55	H-2-Kb	8	5	7	MVNFFSTL	MVNFFSNF	NetMHCpan	19.1	114.7	6.005	124	0.266	58.936	264.197	4.483	222.38	56.25	114.7	19.1	337.0854446	61.62259741	306.013087	69.6209588	M3_p20	1.228571429	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.256	124	0	0	NA	8qE1	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr9	39319155	39319155	A	C	ENSMUST00000216132.1	5	ENSMUSG00000057349	missense	V/G	153	Olfr948	ENSMUST00000216132.1:c.458T>G	ENSMUSP00000149422.1:p.Val153Gly	H-2-Kb	8	5	7	GVYIYAGF	GVYIYAVF	NetMHC	58.46	379.74	6.496	296	0.206	96.387	308.095	3.196	379.74	58.46	167.6	65.5	438.2682402	247.0244836	236.4503711	127.2740898	M3_p20	1.471428571	1.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.218	296	0	0	NA	9qA5.1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	0.965318382	sgMsh2	cell line
chr9	39819815	39819815	A	G	ENSMUST00000215922.1	3	ENSMUSG00000095774	missense	M/V	59	Olfr970	ENSMUST00000215922.1:c.175A>G	ENSMUSP00000150325.1:p.Met59Val	H-2-Kb	8	4	8	SSHLHTPV	SSHLHTPM	NetMHC	61.36	50.46	0.822	486	0.2	145.171	151.98	1.047	50.46	61.36	145.2	184.7	158.7596015	141.4946437	160.9681675	148.8469706	M3_p20	-0.214285714	-0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.211	486	0	0	NA	9qA5.1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	0.93432192	sgMsh2	cell line
chr9	9180096	9180096	GA	G	ENSMUST00000093893.11	1	ENSMUSG00000050730	FS	S/X	61	Arhgap42	ENSMUST00000093893.11:c.181del	ENSMUSP00000091419.4:p.Ser61ProfsTer27	H-2-Kb	8	6	6	AVQKFPSL	AVQKFSQS	NetMHCpan	56.4	11065.3	196.193	142	0.254	117.909	6487.005	55.017	11389.22	73.36	11065.3	56.4	1485.04632	162.4575876	1908.710225	176.9049561	M3_p20	0.142857143	0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.238	142	0	0	NA	9qA1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr8	123200246	123200246	CA	C	ENSMUST00000019422.5	1	ENSMUSG00000019278	FS	N/X	270	Dpep1	ENSMUST00000019422.5:c.809del	ENSMUSP00000019422.4:p.Asn270ThrfsTer55	H-2-Kb	8	30	0	TSRRWQAL	NA	NetMHC	100.21	NA	NA	124	0.266	107.878	NA	NA	NA	100.21	NA	460.2	NA	104.6501849	NA	111.1066364	M3_p20	-1.228571429	-1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.256	124	0	0	NA	8qE1	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr9	38430465	38430465	A	T	ENSMUST00000216644.1	5	ENSMUSG00000052058	missense	Y/F	61	Olfr901	ENSMUST00000216644.1:c.182A>T	ENSMUSP00000150506.1:p.Tyr61Phe	H-2-Kb	8	7	5	HTPMFYFL	HTPMYYFL	NetMHCpan	77.2	108.3	1.403	563	0.261	120.766	151.127	1.251	132.14	102.94	108.3	77.2	190.8710225	155.5034397	170.1139779	138.5925865	M3_p20	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.265	563	0	0	NA	9qA5.1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr9	21956858	21956858	C	T	ENSMUST00000053583.6	1	ENSMUSG00000051238	missense	A/V	142	Swsap1	ENSMUST00000053583.6:c.425C>T	ENSMUSP00000060331.5:p.Ala142Val	H-2-Kb	8	10	2	AVFFSHRL	AAFFSHRL	NetMHCpan	23.2	24.6	1.06	72	0.264	130.628	116.333	0.891	108.86	137.51	24.6	23.2	123.8055176	125.8171954	146.4670721	135.4378341	M3_p20	0.728571429	0.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.245	72	0	0	NA	9qA3	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr9	39819815	39819815	A	G	ENSMUST00000215922.1	3	ENSMUSG00000095774	missense	M/V	59	Olfr970	ENSMUST00000215922.1:c.175A>G	ENSMUSP00000150325.1:p.Met59Val	H-2-Kb	8	8	4	HTPVYYFL	HTPMYYFL	NetMHCpan	118	108.3	0.918	486	0.2	156.094	151.127	0.968	132.14	151.22	108.3	118	190.8710225	160.9681675	170.1139779	162.832091	M3_p20	0.842857143	0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.211	486	0	0	NA	9qA5.1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	0.93432192	sgMsh2	cell line
chr9	39258136	39258136	A	C	ENSMUST00000076903.2	NA	ENSMUSG00000063380	missense	C/G	182	Olfr945	ENSMUST00000076903.2:c.544T>G	ENSMUSP00000076169.2:p.Cys182Gly	H-2-Kb	8	6	6	INHYFGDI	INHYFCDI	NetMHCpan	102	90.9	0.891	365	0.471	276.289	313.213	1.134	217.41	182.12	90.9	102	466.380088	456.8146256	409.0157201	370.458872	M3_p20	-0.657142857	-0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.461	365	0	0	NA	9qA5.1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr9	44333095	44333095	A	C	ENSMUST00000054708.4	1	ENSMUSG00000032123	missense	Q/H	402	Dpagt1	ENSMUST00000054708.4:c.1206A>C	ENSMUSP00000056282.3:p.Gln402His	H-2-Kb	8	10	4	IRYHLVRL	IRYQLVRL	SMMPMBEC	89.896	62.05	0.69	232	0.228	146.157	90.077	0.616	114.73	189.1	280.1	212.5	65.42443789	103.2143305	62.04974485	89.89592386	M3_p20	-0.242857143	-0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.245	232	0	0	NA	9qA5.2	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr9	39184623	39184623	T	G	ENSMUST00000071617.5	3	ENSMUSG00000094970	missense	I/M	148	Olfr943	ENSMUST00000071617.5:c.444T>G	ENSMUSP00000071545.5:p.Ile148Met	H-2-Kb	8	5	7	QIYTSLML	QIYTSLIL	NetMHC	199.22	851.53	4.274	550	0.289	279.862	752.265	2.688	851.53	199.22	653	314.4	637.88149	245.323979	1249.510759	426.324214	M3_p20	1.6	1.6	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.284	550	0	0	NA	9qA5.1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr9	21589965	21589965	A	T	ENSMUST00000034700.14	1	ENSMUSG00000032182	missense	S/T	236	Yipf2	ENSMUST00000034700.14:c.706T>A	ENSMUSP00000034700.7:p.Ser236Thr	H-2-Kb	8	8	4	LALTAAGL	LALSAAGL	NetMHC	241.92	271.62	1.123	99	0.273	348.652	375.733	1.078	271.62	241.92	423.5	371	385.2476516	357.8821189	366.2182643	339.4220093	M3_p20	1.7	1.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	99	0	0	NA	9qA3	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr9	19808619	19808619	G	T	ENSMUST00000217280.1	5	ENSMUSG00000095448	missense	Q/H	100	Olfr859	ENSMUST00000217280.1:c.300G>T	ENSMUSP00000151076.1:p.Gln100His	H-2-Kb	8	10	2	THVSFFIL	TQVSFFIL	NetMHCpan	197.8	154.3	0.78	779	0.221	380.489	316.456	0.832	294.27	373.06	154.3	197.8	338.6413603	387.9180607	350.5419514	430.2689433	M3_p20	2.014285714	2.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.218	779	0	0	NA	9qA3	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	0.965318382	sgMsh2	cell line
chr9	38368241	38368241	C	T	ENSMUST00000052085.1	NA	ENSMUSG00000049864	missense	L/F	232	Olfr250	ENSMUST00000052085.1:c.694C>T	ENSMUSP00000051631.1:p.Leu232Phe	H-2-Kb	8	10	2	IFVNVIHL	ILVNVIHL	SMM	322.656	947.851	2.938	367	0.188	375.758	885.748	2.357	1466.77	381.91	789.2	396.7	947.8508415	322.6561891	823.6448742	369.6068402	M3_p20	1.828571429	1.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.198	367	0	0	NA	9qA5.1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	0.876757063	sgMsh2	cell line
chr8	123200246	123200246	CA	C	ENSMUST00000019422.5	1	ENSMUSG00000019278	FS	N/X	270	Dpep1	ENSMUST00000019422.5:c.809del	ENSMUSP00000019422.4:p.Asn270ThrfsTer55	H-2-Kb	8	4	8	VMVNFFST	VMVNFFSN	NetMHCpan	308.8	416	1.347	124	0.266	457.833	367.409	0.802	351.34	385.1	416	308.8	315.3116375	775.7825382	383.4775994	530.5667136	M3_p20	0.957142857	1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.256	124	0	0	NA	8qE1	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr8	93271855	93271855	C	T	ENSMUST00000034178.8	1	ENSMUSG00000031725	missense	R/H	171	Ces1f	ENSMUST00000034178.8:c.512G>A	ENSMUSP00000034178.8:p.Arg171His	H-2-Kb	8	5	7	VVAIQYHL	VVAIQYRL	NetMHCpan	194.2	249.4	1.284	269	0.182	418.703	352.353	0.842	390.12	430.27	249.4	194.2	314.5864409	407.1364636	559.4225905	707.5220838	M3_p20	0.9	0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.191	269	0	0	NA	8qC5	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	0.845760601	sgMsh2	cell line
chr9	14464244	14464244	CT	C	ENSMUST00000058796.6	1	ENSMUSG00000053914	FS	K/X	106	Kdm4d	ENSMUST00000058796.6:c.317del	ENSMUSP00000061632.6:p.Lys106SerfsTer62	H-2-Kb	8	63	0	KTYWNRNV	NA	SMM	220.161	NA	NA	124	0.242	287.732	NA	NA	NA	506.68	NA	327.3	NA	220.1608027	NA	248.1646968	M3_p20	-1.457142857	-1.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.252	124	0	0	NA	9qA2	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr9	45672814	45672814	A	G	ENSMUST00000034592.9	1	ENSMUSG00000032087	missense	S/G	526	Dscaml1	ENSMUST00000034592.9:c.1576A>G	ENSMUSP00000034592.8:p.Ser526Gly	H-2-Kb	8	8	4	TTIGHMNV	TTISHMNV	SMM	358.707	155.862	0.435	45	0.244	484.318	174.694	0.361	100.18	520.16	336.8	899.6	155.8619122	358.7071224	193.5263029	448.476819	M3_p20	0.4	0.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.276	45	0	0	NA	9qA5.2	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr8	123200246	123200246	CA	C	ENSMUST00000019422.5	1	ENSMUSG00000019278	FS	N/X	270	Dpep1	ENSMUST00000019422.5:c.809del	ENSMUSP00000019422.4:p.Asn270ThrfsTer55	H-2-Kb	9	4	8	VMVNFFSTL	VMVNFFSNF	NetMHCpan	4.4	12	2.727	124	0.266	9.947	16.668	1.676	10.15	4.79	12	4.4	21.33585248	15.10462682	26.86890699	18.58874201	M3_p20	1.228571429	1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.256	124	0	0	NA	8qE1	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr9	39819815	39819815	A	G	ENSMUST00000215922.1	3	ENSMUSG00000095774	missense	M/V	59	Olfr970	ENSMUST00000215922.1:c.175A>G	ENSMUSP00000150325.1:p.Met59Val	H-2-Kb	9	10	2	PVYYFLSSL	PMYYFLSSL	SMM	35.165	16.222	0.461	486	0.2	46.13	35.595	0.772	45.21	53.06	42.4	39.2	16.22220929	35.16494966	28.79055255	58.51268133	M3_p20	0.885714286	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.211	486	0	0	NA	9qA5.1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	0.93432192	sgMsh2	cell line
chr9	9180096	9180096	GA	G	ENSMUST00000093893.11	1	ENSMUSG00000050730	FS	S/X	61	Arhgap42	ENSMUST00000093893.11:c.181del	ENSMUSP00000091419.4:p.Ser61ProfsTer27	H-2-Kb	9	5	7	MAVQKFPSL	MAVQKFSQS	NetMHC	53.32	4058.82	76.122	142	0.254	124.504	2384.403	19.151	4058.82	53.32	4485.7	55.7	636.9568317	206.5903351	709.9863514	193.3080768	M3_p20	0.142857143	0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.238	142	0	0	NA	9qA1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr8	93271855	93271855	C	T	ENSMUST00000034178.8	1	ENSMUSG00000031725	missense	R/H	171	Ces1f	ENSMUST00000034178.8:c.512G>A	ENSMUSP00000034178.8:p.Arg171His	H-2-Kb	9	6	6	VAIQYHLSI	VAIQYRLSI	NetMHCpan	28.2	72.9	2.585	269	0.182	115.725	207.541	1.793	125.18	57.57	72.9	28.2	342.0660715	227.0439846	289.9011913	173.8801475	M3_p20	0.571428571	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.191	269	0	0	NA	8qC5	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	0.845760601	sgMsh2	cell line
chr9	21956858	21956858	C	T	ENSMUST00000053583.6	1	ENSMUSG00000051238	missense	A/V	142	Swsap1	ENSMUST00000053583.6:c.425C>T	ENSMUSP00000060331.5:p.Ala142Val	H-2-Kb	9	9	3	TAVFFSHRL	TAAFFSHRL	NetMHCpan	30.6	58.4	1.908	72	0.264	133.034	172.096	1.294	124.35	68.32	58.4	30.6	219.8416627	197.7470439	294.6117067	228.6914879	M3_p20	0.728571429	0.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.245	72	0	0	NA	9qA3	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr9	44333095	44333095	A	C	ENSMUST00000054708.4	1	ENSMUSG00000032123	missense	Q/H	402	Dpagt1	ENSMUST00000054708.4:c.1206A>C	ENSMUSP00000056282.3:p.Gln402His	H-2-Kb	9	9	5	SIRYHLVRL	SIRYQLVRL	NetMHC	72.21	244.4	3.385	232	0.228	145.776	454.768	3.12	244.4	72.21	546.9	165.9	396.378418	135.865753	513.1566957	155.6861575	M3_p20	-0.242857143	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.245	232	0	0	NA	9qA5.2	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr9	39184623	39184623	T	G	ENSMUST00000071617.5	3	ENSMUSG00000094970	missense	I/M	148	Olfr943	ENSMUST00000071617.5:c.444T>G	ENSMUSP00000071545.5:p.Ile148Met	H-2-Kb	9	3	9	SSQIYTSLM	SSQIYTSLI	NetMHC	79.33	157.47	1.985	550	0.289	233.471	430.395	1.843	157.47	79.33	299.6	169.7	561.1900987	297.2418804	608.4851727	356.6563823	M3_p20	0.557142857	0.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.284	550	0	0	NA	9qA5.1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr8	105842526	105842526	T	C	ENSMUST00000034365.4	1	ENSMUSG00000031893	missense	F/L	503	Tsnaxip1	ENSMUST00000034365.4:c.1507T>C	ENSMUSP00000034365.4:p.Phe503Leu	H-2-Kb	9	7	5	IMNQLYAVL	IMNQFYAVL	NetMHCpan	84.5	13.7	0.162	160	0.225	96.352	21.513	0.223	11.77	97.15	13.7	84.5	33.04532291	121.3696222	29.32580889	95.55424822	M3_p20	0.757142857	0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.221	160	0	0	NA	8qD3	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	0.97860258	sgMsh2	cell line
chr9	38430465	38430465	A	T	ENSMUST00000216644.1	5	ENSMUSG00000052058	missense	Y/F	61	Olfr901	ENSMUST00000216644.1:c.182A>T	ENSMUSP00000150506.1:p.Tyr61Phe	H-2-Kb	9	9	3	PMFYFLFNL	PMYYFLFNL	SMM	27.36	17.026	0.622	563	0.261	82.941	49.519	0.597	66.51	116.65	86.7	137.9	17.02589693	27.35961615	32.52744865	49.23228579	M3_p20	1.6	1.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.265	563	0	0	NA	9qA5.1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr9	39319155	39319155	A	C	ENSMUST00000216132.1	5	ENSMUSG00000057349	missense	V/G	153	Olfr948	ENSMUST00000216132.1:c.458T>G	ENSMUSP00000149422.1:p.Val153Gly	H-2-Kb	9	4	8	SGVYIYAGF	SGVYIYAVF	NetMHCpan	124	253.4	2.044	296	0.206	358.631	781.651	2.18	910.28	158.65	253.4	124	853.3162183	558.6116644	709.9863514	570.4925797	M3_p20	1.471428571	1.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.218	296	0	0	NA	9qA5.1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	0.965318382	sgMsh2	cell line
chr9	38368241	38368241	C	T	ENSMUST00000052085.1	NA	ENSMUSG00000049864	missense	L/F	232	Olfr250	ENSMUST00000052085.1:c.694C>T	ENSMUSP00000051631.1:p.Leu232Phe	H-2-Kb	9	9	3	LIFVNVIHL	LILVNVIHL	NetMHC	168.82	706.84	4.187	367	0.188	284.247	934.768	3.289	706.84	168.82	1075.9	238.8	924.9324152	329.6932077	944.6044779	340.6042008	M3_p20	1.828571429	2.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.198	367	0	0	NA	9qA5.1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	0.876757063	sgMsh2	cell line
chr9	44333095	44333095	A	C	ENSMUST00000054708.4	1	ENSMUSG00000032123	missense	Q/H	402	Dpagt1	ENSMUST00000054708.4:c.1206A>C	ENSMUSP00000056282.3:p.Gln402His	H-2-Kb	9	6	8	ATFSIRYHL	ATFSIRYQL	NetMHCpan	80.7	165.9	2.056	232	0.228	339.306	452.341	1.333	331.74	204.25	165.9	80.7	572.9411296	474.3621186	581.0988286	615.5310989	M3_p20	0.185714286	0.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.245	232	0	0	NA	9qA5.2	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr9	39258136	39258136	A	C	ENSMUST00000076903.2	NA	ENSMUSG00000063380	missense	C/G	182	Olfr945	ENSMUST00000076903.2:c.544T>G	ENSMUSP00000076169.2:p.Cys182Gly	H-2-Kb	9	5	7	VINHYFGDI	VINHYFCDI	NetMHC	248.12	402.57	1.622	365	0.471	313.678	336.411	1.072	402.57	248.12	262.7	378.9	382.9217191	379.4110717	289.9011913	248.4562923	M3_p20	-0.657142857	0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.461	365	0	0	NA	9qA5.1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr9	39258136	39258136	A	C	ENSMUST00000076903.2	NA	ENSMUSG00000063380	missense	C/G	182	Olfr945	ENSMUST00000076903.2:c.544T>G	ENSMUSP00000076169.2:p.Cys182Gly	H-2-Kb	9	6	6	INHYFGDIL	INHYFCDIL	NetMHCpan	249.4	114.5	0.459	365	0.471	350.747	161.261	0.46	107.57	280.66	114.5	249.4	208.0223508	420.8332054	225.553723	456.2995075	M3_p20	0.385714286	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.461	365	0	0	NA	9qA5.1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	2	1	sgMsh2	cell line
chr9	38581355	38581355	C	T	ENSMUST00000217160.2	2	ENSMUSG00000111448	missense	P/L	26	Olfr912	ENSMUST00000217160.2:c.77C>T	ENSMUSP00000150014.1:p.Pro26Leu	H-2-Kb	9	9	3	QILLFLVFL	QIPLFLVFL	SMM	184.124	315.58	1.714	378	0.238	288.626	419.741	1.454	277.75	299.76	646.9	2082.1	315.5803838	184.1238299	523.901932	277.4917016	M3_p20	3.571428571	3.671428571	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.241	378	0	0	NA	9qA5.1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr9	38430465	38430465	A	T	ENSMUST00000216644.1	5	ENSMUSG00000052058	missense	Y/F	61	Olfr901	ENSMUST00000216644.1:c.182A>T	ENSMUSP00000150506.1:p.Tyr61Phe	H-2-Kb	9	7	5	HTPMFYFLF	HTPMYYFLF	NetMHCpan	167.9	171.6	1.022	563	0.261	264.55	314.094	1.187	361.43	303.1	171.6	167.9	278.0417415	226.0008122	350.1466697	329.0409876	M3_p20	1.6	1.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.265	563	0	0	NA	9qA5.1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr9	39319155	39319155	A	C	ENSMUST00000216132.1	5	ENSMUSG00000057349	missense	V/G	153	Olfr948	ENSMUST00000216132.1:c.458T>G	ENSMUSP00000149422.1:p.Val153Gly	H-2-Kb	9	8	4	IYAGFCASV	IYAVFCASV	NetMHC	307.2	185.83	0.605	296	0.206	442.988	293.761	0.663	185.83	307.2	219.3	397.2	368.2222268	488.776143	420.0006862	494.595317	M3_p20	1.7	1.7	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.218	296	0	0	NA	9qA5.1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	0.965318382	sgMsh2	cell line
chr9	19808619	19808619	G	T	ENSMUST00000217280.1	5	ENSMUSG00000095448	missense	Q/H	100	Olfr859	ENSMUST00000217280.1:c.300G>T	ENSMUSP00000151076.1:p.Gln100His	H-2-Kb	9	10	2	THVSFFILF	TQVSFFILF	SMM	175.029	226.001	1.291	779	0.221	275.16	317.494	1.154	322.92	314.68	446.4	362.2	226.0008122	175.0289954	312.0685478	235.640535	M3_p20	2.871428571	2.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.218	779	0	0	NA	9qA3	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	0.965318382	sgMsh2	cell line
chr8	123200246	123200246	CA	C	ENSMUST00000019422.5	1	ENSMUSG00000019278	FS	N/X	270	Dpep1	ENSMUST00000019422.5:c.809del	ENSMUSP00000019422.4:p.Asn270ThrfsTer55	H-2-Kb	9	45	0	IMMVLLCFL	NA	SMM	165.619	NA	NA	124	0.266	264.355	NA	NA	NA	319.66	NA	450.4	NA	165.6189397	NA	209.0499173	M3_p20	3.257142857	3.257142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.256	124	0	0	NA	8qE1	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr8	105842526	105842526	T	C	ENSMUST00000034365.4	1	ENSMUSG00000031893	missense	F/L	503	Tsnaxip1	ENSMUST00000034365.4:c.1507T>C	ENSMUSP00000034365.4:p.Phe503Leu	H-2-Kb	9	8	4	MNQLYAVLM	MNQFYAVLM	NetMHCpan	308.2	218.5	0.709	160	0.225	491.947	567.121	1.153	489.91	383.95	218.5	308.2	644.3324442	599.9430132	729.8775406	767.8033453	M3_p20	1.528571429	1.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.221	160	0	0	NA	8qD3	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	0.97860258	sgMsh2	cell line
chr9	38430465	38430465	A	T	ENSMUST00000216644.1	5	ENSMUSG00000052058	missense	Y/F	61	Olfr901	ENSMUST00000216644.1:c.182A>T	ENSMUSP00000150506.1:p.Tyr61Phe	H-2-Kb	9	11	1	FYFLFNLSF	YYFLFNLSF	SMM	275.493	314.855	1.143	563	0.261	352.614	380.368	1.079	404.9	391.72	1302.1	2172.3	314.8545691	275.4926395	355.8360953	313.5089908	M3_p20	1.671428571	1.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.265	563	0	0	NA	9qA5.1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr9	50541135	50541135	CT	C	ENSMUST00000119103.1	5	ENSMUSG00000032066	FS	K/X	211	Bco2	ENSMUST00000119103.1:c.632del	ENSMUSP00000112727.1:p.Lys211ArgfsTer23	H-2-Kb	9	22	0	RCYVPLPPL	NA	NetMHCpan	362.2	NA	NA	29	0.31	400.867	NA	NA	NA	415.27	NA	362.2	NA	386.4648502	NA	431.7675507	M3_p20	0.814285714	0.814285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.291	29	0	0	NA	9qA5.3	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr9	14464244	14464244	CT	C	ENSMUST00000058796.6	1	ENSMUSG00000053914	FS	K/X	106	Kdm4d	ENSMUST00000058796.6:c.317del	ENSMUSP00000061632.6:p.Lys106SerfsTer62	H-2-Kb	9	32	0	CMSHRFMVL	NA	SMM	252.412	NA	NA	124	0.242	323.535	NA	NA	NA	564.66	NA	358.5	NA	252.4120012	NA	288.5692163	M3_p20	0.6	0.6	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.252	124	0	0	NA	9qA2	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr8	121888323	121888323	A	G	ENSMUST00000045557.9	1	ENSMUSG00000040010	missense	W/R	262	Slc7a5	ENSMUST00000045557.9:c.784T>C	ENSMUSP00000041557.8:p.Trp262Arg	H-2-Kb	9	6	6	FAYGGRNYL	FAYGGWNYL	SMM	342.855	144.248	0.421	146	0.288	404.088	149.076	0.369	211.24	824.21	122.4	408	144.2480663	342.8546153	153.9040328	400.1750427	M3_p20	-1.085714286	-0.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.253	146	0	0	NA	8qE1	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chrX	23315137	23315137	G	A	ENSMUST00000035973.4	5	ENSMUSG00000036782	missense	R/C	15	Klhl13	ENSMUST00000035973.4:c.43C>T	ENSMUSP00000041190.4:p.Arg15Cys	H-2-Db	9	8	4	AILCNRSLV	AILRNRSLV	SMM	330.081	363.597	1.102	14	0.357	431.57	517.569	1.199	625.34	442.83	842.2	486.8	363.5967562	330.0806	409.7981561	420.3102682	M3_p20	0.785714286	0.828571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.4	14	0	0	NA	XqA2	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	sgMsh2	cell line
chr9	105026705	105026705	A	T	ENSMUST00000057742.14	1	ENSMUSG00000032564	missense	Q/H	435	Cpne4	ENSMUST00000057742.14:c.1305A>T	ENSMUSP00000049663.8:p.Gln435His	H-2-Kb	8	9	3	ASHYFILL	ASQYFILL	NetMHCpan	15.1	35.7	2.364	202	0.248	41.412	58.188	1.405	30.75	20.2	35.7	15.1	80.67519058	70.42713151	91.77829809	62.62388407	M3_p20	1.371428571	1.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.239	202	0	0	NA	9qF1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr9	123640590	123640590	A	T	ENSMUST00000040960.12	1	ENSMUSG00000036814	missense	C/S	481	Slc6a20a	ENSMUST00000040960.12:c.1441T>A	ENSMUSP00000047690.6:p.Cys481Ser	H-2-Kb	8	10	2	VSYVYGLK	VCYVYGLK	SMMPMBEC	22.067	186.526	8.453	122	0.32	63.142	2311.159	36.603	5104.27	96.31	4266.9	318.2	355.4184757	29.97367541	186.5262676	22.06683258	M3_p20	0.042857143	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.312	122	0	0	NA	9qF4	chr9-121689956-124127055	3	2	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr9	55859035	55859035	A	G	ENSMUST00000037408.8	5	ENSMUSG00000034007	missense	S/P	486	Scaper	ENSMUST00000037408.8:c.1456T>C	ENSMUSP00000043411.8:p.Ser486Pro	H-2-Kb	8	5	7	LSFCGVPL	LSFCGVSL	NetMHCpan	105.4	186	1.765	317	0.227	131.862	273.904	2.077	509.51	216.74	186	105.4	320.4350395	155.1457917	227.3735801	108.5775406	M3_p20	1.5	1.5	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	317	0	0	NA	9qB	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr9	54628565	54628565	A	G	ENSMUST00000138315.1	3	ENSMUSG00000032281	missense	V/A	51	Acsbg1	ENSMUST00000138315.1:c.152T>C	ENSMUSP00000118133.1:p.Val51Ala	H-2-Kb	8	5	7	CAWNLSAL	CAWNLSVL	NetMHCpan	288.1	607.2	2.108	139	0.23	380.756	906.753	2.381	1552.12	410.97	607.2	288.1	825.5435717	350.5419514	987.9614526	439.2785529	M3_p20	0.857142857	0.857142857	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.225	139	0	0	NA	9qA5.3	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	0.996314844	sgMsh2	cell line
chr9	65128477	65128477	C	T	ENSMUST00000035499.4	1	ENSMUSG00000032816	missense	A/V	632	Igdcc4	ENSMUST00000035499.4:c.1895C>T	ENSMUSP00000045387.3:p.Ala632Val	H-2-Kb	8	8	4	VPFVPAEL	VPFAPAEL	SMM	145.124	151.266	1.042	95	0.274	360.453	542.661	1.505	881.27	547.63	1959.5	1317.9	151.2655393	145.1242539	204.0515979	173.2766328	M3_p20	0.842857143	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.305	95	0	0	NA	9qC	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr9	78064712	78064712	T	G	ENSMUST00000024104.8	1	ENSMUSG00000023333	missense	Y/D	312	Gcm1	ENSMUST00000024104.8:c.934T>G	ENSMUSP00000024104.7:p.Tyr312Asp	H-2-Kb	8	10	2	IDYPAYPL	IYYPAYPL	SMM	119.053	83.703	0.703	176	0.256	224.62	75.401	0.336	51.67	871.81	67.1	287.9	83.70280268	119.0529058	113.6946424	161.3392375	M3_p20	-0.528571429	-0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.265	176	0	0	NA	9qE1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr9	123640590	123640590	A	T	ENSMUST00000040960.12	1	ENSMUSG00000036814	missense	C/S	481	Slc6a20a	ENSMUST00000040960.12:c.1441T>A	ENSMUSP00000047690.6:p.Cys481Ser	H-2-Kb	9	8	4	IAVSYVYGL	IAVCYVYGL	NetMHCpan	23.6	41.6	1.763	122	0.32	105.237	151.867	1.443	54.13	25.5	41.6	23.6	254.7475407	184.9737069	249.6031145	237.82089	M3_p20	1.2	1.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.312	122	0	0	NA	9qF4	chr9-121689956-124127055	3	2	1	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr9	96297705	96297705	G	GA	ENSMUST00000165768.3	1	ENSMUSG00000032411	FS	E/EX	140	Tfdp2	ENSMUST00000165768.3:c.426dup	ENSMUSP00000128260.2:p.Glu143ArgfsTer47	H-2-Kb	9	20	0	PAYQFCSGM	NA	NetMHC	85.15	NA	NA	149	0.295	106.96	NA	NA	NA	85.15	NA	165.8	NA	88.53398242	NA	125.3862749	M3_p20	0.171428571	0.171428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.287	149	0	0	NA	9qE3.3	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chrX	53737717	53737717	CT	C	ENSMUST00000069209.1	1	ENSMUSG00000055555	FS	F/X	191	4930502E18Rik	ENSMUST00000069209.1:c.575del	ENSMUSP00000064619.1:p.Phe192SerfsTer39	H-2-Kb	9	9	4	TIFSPWILL	NA	SMM	107.922	NA	NA	103	0.427	133.325	NA	NA	NA	110.65	NA	156	NA	107.9220037	NA	162.6484766	M3_p20	1.657142857	1.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.439	103	0	0	NA	XqA5	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	sgMsh2	cell line
chr9	124105949	124105949	A	G	ENSMUST00000168841.2	1	ENSMUSG00000049103	missense	M/V	89	Ccr2	ENSMUST00000168841.2:c.265A>G	ENSMUSP00000132453.1:p.Met89Val	H-2-Kb	9	11	1	VTDIYLLNL	MTDIYLLNL	NetMHC	138.25	425.91	3.081	316	0.025	203.825	501.033	2.458	425.91	138.25	461	198.6	605.4942175	236.1076181	541.0656958	209.0499173	M3_p20	1.085714286	1.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.036	316	0	0	NA	9qF4	chr9-121689956-124127055	3	2	1	0.91	4.029540036	NA	1	0.159410375	sgMsh2	cell line
chr9	105026705	105026705	A	T	ENSMUST00000057742.14	1	ENSMUSG00000032564	missense	Q/H	435	Cpne4	ENSMUST00000057742.14:c.1305A>T	ENSMUSP00000049663.8:p.Gln435His	H-2-Kb	9	9	3	ASHYFILLI	ASQYFILLI	NetMHCpan	194.8	511.6	2.626	202	0.248	354.936	657.147	1.851	562.48	339.95	511.6	194.8	751.8132925	369.9218633	849.6694433	416.1500968	M3_p20	2.128571429	2.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.239	202	0	0	NA	9qF1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr9	119958066	119958066	A	G	ENSMUST00000035100.5	1	ENSMUSG00000032514	missense	E/G	713	Ttc21a	ENSMUST00000035100.5:c.2138A>G	ENSMUSP00000035100.5:p.Glu713Gly	H-2-Kb	9	4	8	LYIGCYVGL	LYIGCYVEL	SMMPMBEC	243.36	269.929	1.109	113	0.257	418.183	661.365	1.582	1022.91	541.17	983.8	753	338.9299909	295.1956816	269.9292823	243.3604501	M3_p20	1.842857143	1.842857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.264	113	0	0	NA	9qF4	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chr9	105026705	105026705	A	T	ENSMUST00000057742.14	1	ENSMUSG00000032564	missense	Q/H	435	Cpne4	ENSMUST00000057742.14:c.1305A>T	ENSMUSP00000049663.8:p.Gln435His	H-2-Kb	9	10	2	SHYFILLIL	SQYFILLIL	SMM	295.196	381.162	1.291	202	0.248	321.169	437.853	1.363	778.38	713.59	417.3	296.2	381.1623536	295.1956816	458.4056903	346.1385739	M3_p20	3.128571429	3.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.239	202	0	0	NA	9qF1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	sgMsh2	cell line
chrX	144481235	144481235	T	C	ENSMUST00000040184.3	1	ENSMUSG00000041710	missense	I/V	209	Trpc5	ENSMUST00000040184.3:c.625A>G	ENSMUSP00000049063.3:p.Ile209Val	H-2-Db	9	11	1	VALSSEDPI	IALSSEDPI	NetMHC	24.86	31.44	1.265	58	0.569	79.729	105.196	1.319	31.44	24.86	108.4	109.1	109.5519217	80.46740575	101.992914	78.98961554	M3_p20	-0.271428571	0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.568	58	0	0	NA	XqF2	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	sgMsh2	cell line
chrX	69844125	69844125	G	T	ENSMUST00000033532.6	1	ENSMUSG00000031189	missense	K/N	923	Aff2	ENSMUST00000033532.6:c.2769G>T	ENSMUSP00000033532.6:p.Lys923Asn	H-2-Db	9	7	5	CATFNGISI	CATFKGISI	NetMHC	268.39	18926.62	70.519	57	0.439	327.554	13462.653	41.101	18926.62	268.39	14549.6	327.3	10656.63277	327.8083411	12375.70647	368.6124504	M3_p20	0.914285714	1	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.427	57	0	0	NA	XqA7.2	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	sgMsh2	cell line
chrX	127060561	127060561	G	T	ENSMUST00000096332.1	1	ENSMUSG00000062791	missense	G/V	123	Gm382	ENSMUST00000096332.1:c.368G>T	ENSMUSP00000094056.1:p.Gly123Val	H-2-Db	9	8	4	TVFVNPEAV	TVFGNPEAV	NetMHCpan	121.7	1040	8.546	68	0.456	354.372	1377.386	3.887	7545.19	794.92	1040	121.7	1654.321828	401.4394047	1100.449202	307.3052643	M3_p20	0.628571429	0.628571429	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.488	68	0	0	NA	XqE3	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	sgMsh2	cell line
chrX	59250947	59250947	A	AG	ENSMUST00000124402.1	2	ENSMUSG00000031137	FS	P/PX	23	Fgf13	ENSMUST00000124402.1:c.68dup	ENSMUSP00000114905.1:p.Gly24TrpfsTer28	H-2-Kb	8	19	0	VTTRFHPI	NA	NetMHCpan	45.2	NA	NA	48	0.375	60.112	NA	NA	NA	51.4	NA	45.2	NA	68.82401428	NA	71.07878574	M3_p20	-0.485714286	-0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.382	48	0	0	NA	XqA6	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	sgMsh2	cell line
chrX	152061792	152061792	CA	C	ENSMUST00000045312.5	1	ENSMUSG00000041133	FS	N/X	1229	Smc1a	ENSMUST00000045312.5:c.3686del	ENSMUSP00000044645.5:p.Asn1229ThrfsTer47	H-2-Kb	8	19	0	SIFLSGSL	NA	NetMHC	59.77	NA	NA	112	0.446	63.291	NA	NA	NA	59.77	NA	62.5	NA	64.08258172	NA	76.51384027	M3_p20	1.842857143	1.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.456	112	0	0	NA	XqF3	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	sgMsh2	cell line
chrX	144481235	144481235	T	C	ENSMUST00000040184.3	1	ENSMUSG00000041710	missense	I/V	209	Trpc5	ENSMUST00000040184.3:c.625A>G	ENSMUSP00000049063.3:p.Ile209Val	H-2-Kb	8	6	6	ASPSLVAL	ASPSLIAL	NetMHC	293.89	322.69	1.098	58	0.569	366.082	413.167	1.129	322.69	293.89	550.6	481.2	374.7485835	343.3523309	451.5855118	388.8123042	M3_p20	1.485714286	1.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.568	58	0	0	NA	XqF2	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	sgMsh2	cell line
chrX	72257609	72257609	T	G	ENSMUST00000064780.3	1	ENSMUSG00000031340	missense	K/T	865	Gabre	ENSMUST00000064780.3:c.2594A>C	ENSMUSP00000066543.3:p.Lys865Thr	H-2-Kb	8	8	4	VLRTYFCM	VLRKYFCM	NetMHCpan	313.9	380	1.211	49	0.429	454.151	592.614	1.305	877.47	794.76	380	313.9	621.9278428	475.0507412	563.3003227	433.2514252	M3_p20	0.642857143	0.971428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.454	49	0	0	NA	XqA7.3	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	sgMsh2	cell line
chrX	86747655	86747655	G	A	ENSMUST00000113966.7	5	ENSMUSG00000052372	missense	P/S	560	Il1rapl1	ENSMUST00000113966.7:c.1678C>T	ENSMUSP00000109599.1:p.Pro560Ser	H-2-Kb	9	10	2	MSFKRIEPI	MPFKRIEPI	NetMHCpan	58.3	2180.6	37.403	86	0.57	177.366	2262.711	12.757	4631.31	173.91	2180.6	58.3	2344.822647	233.4049166	1946.480243	180.8214719	M3_p20	-0.242857143	-0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.564	86	0	0	NA	XqC1	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	sgMsh2	cell line
chrX	56362784	56362784	GA	G	ENSMUST00000101560.3	1	ENSMUSG00000073176	FS	E/X	239	Zfp449	ENSMUST00000101560.3:c.723del	ENSMUSP00000099096.3:p.Lys241AsnfsTer10	H-2-Kb	9	12	2	KNWKLCTHL	NA	NetMHCpan	216.4	NA	NA	32	0.781	360.47	NA	NA	NA	217.15	NA	216.4	NA	593.0755223	NA	503.7905305	M3_p20	0.2	0.2	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.749	32	0	0	NA	XqA6	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	sgMsh2	cell line
chrX	152061792	152061792	CA	C	ENSMUST00000045312.5	1	ENSMUSG00000041133	FS	N/X	1229	Smc1a	ENSMUST00000045312.5:c.3686del	ENSMUSP00000044645.5:p.Asn1229ThrfsTer47	H-2-Kb	9	31	0	VHLLSWISL	NA	NetMHC	278.75	NA	NA	112	0.446	319.29	NA	NA	NA	278.75	NA	330.4	NA	317.7678825	NA	320.8115533	M3_p20	1.914285714	1.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.456	112	0	0	NA	XqF3	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	sgMsh2	cell line
chrX	101673545	101673545	GA	G	ENSMUST00000044475.4	1	ENSMUSG00000034160	FS	K/X	757	Ogt	ENSMUST00000044475.4:c.2271del	ENSMUSP00000045409.4:p.Lys757AsnfsTer23	H-2-Kb	9	22	0	VTQLLICPL	NA	NetMHCpan	324.4	NA	NA	68	0.544	478.008	NA	NA	NA	401.25	NA	324.4	NA	554.7662088	NA	602.9065471	M3_p20	1.9	2.085714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.537	68	0	0	NA	XqD	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	sgMsh2	cell line
chrX	152061792	152061792	CA	C	ENSMUST00000045312.5	1	ENSMUSG00000041133	FS	N/X	1229	Smc1a	ENSMUST00000045312.5:c.3686del	ENSMUSP00000044645.5:p.Asn1229ThrfsTer47	H-2-Kb	9	34	0	LSWISLPPI	NA	NetMHCpan	337.8	NA	NA	112	0.446	474.202	NA	NA	NA	476.07	NA	337.8	NA	588.9928191	NA	472.3348608	M3_p20	1.128571429	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.456	112	0	0	NA	XqF3	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	sgMsh2	cell line
chrX	64271265	64271265	T	C	ENSMUST00000069926.13	1	ENSMUSG00000046699	missense	T/A	599	Slitrk4	ENSMUST00000069926.13:c.1795A>G	ENSMUSP00000064443.7:p.Thr599Ala	H-2-Kb	9	8	4	PAIAFTTPL	PAITFTTPL	SMM	267.985	239.392	0.893	106	0.443	348.429	300.576	0.863	409.34	540.29	319.8	361.7	239.3922023	267.9847002	281.3519957	335.1583163	M3_p20	1.414285714	1.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.449	106	0	0	NA	XqA7.1	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	sgMsh2	cell line
chr1	165539831	165539831	A	G	ENSMUST00000027852.14	1	ENSMUSG00000026567	missense	T/A	557	Adcy10	ENSMUST00000027852.14:c.1669A>G	ENSMUSP00000027852.8:p.Thr557Ala	H-2-Db	9	4	8	SFHQNFYAI	SFHQNFYTI	SMM	105.104	62.176	0.592	122	0.287	167.108	96.911	0.58	73.99	141.21	379.5	647.3	62.17560216	105.1041828	119.8312253	193.0056399	M3	-0.342857143	-0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.295	122	0	0	NA	1qH2.3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr1	85579187	85579187	CT	C	ENSMUST00000093508.6	1	ENSMUSG00000070034	FS	K/X	385	Sp110	ENSMUST00000093508.6:c.1154del	ENSMUSP00000091226.6:p.Lys385SerfsTer13	H-2-Db	9	11	1	SAFRMRQEI	NA	SMMPMBEC	212.114	NA	NA	123	0.089	246.936	NA	NA	NA	356.88	NA	263.4	NA	230.4729708	NA	212.1143253	M3	-0.971428571	-0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0894	123	0	0	NA	1qC5	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.382840676	sgMsh2	cell line
chr1	92588592	92588592	A	C	ENSMUST00000190505.2	3	ENSMUSG00000046300	missense	K/N	87	Olfr1412	ENSMUST00000190505.2:c.261A>C	ENSMUSP00000150943.1:p.Lys87Asn	H-2-Db	9	11	1	NAMANFYSS	KAMANFYSS	SMM	238.572	187.767	0.787	200	0.295	448.615	248.476	0.554	418.17	714	263.3	574.7	187.7673167	238.5722904	233.6522675	322.5299134	M3	0.014285714	0.385714286	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.282	200	0	0	NA	1qD	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr1	74594618	74594618	CT	C	ENSMUST00000027357.11	1	ENSMUSG00000026171	FS	K/X	245	Rnf25	ENSMUST00000027357.11:c.734del	ENSMUSP00000027357.5:p.Lys245ArgfsTer31	H-2-Kb	8	24	0	TSLAFSSL	NA	NetMHC	4.67	NA	NA	65	0.215	8.657	NA	NA	NA	4.67	NA	6.1	NA	11.21346934	NA	11.74194387	M3	1.4	1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.225	65	73	17	0.232876712	1qC3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.96352519	sgMsh2	cell line
chr1	92573497	92573497	T	C	ENSMUST00000214239.1	5	ENSMUSG00000058904	missense	F/L	109	Olfr1413	ENSMUST00000214239.1:c.325T>C	ENSMUSP00000150792.1:p.Phe109Leu	H-2-Kb	8	8	4	TQFLFFSL	TQFFFFSL	NetMHC	7.41	14.4	1.943	174	0.241	9.997	12.057	1.206	14.4	7.41	8.2	10	12.09873599	10.7830098	12.01544888	9.99401507	M3	1.671428571	1.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.232	174	0	0	NA	1qD	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.993501529	sgMsh2	cell line
chr1	172246733	172246733	CA	C	ENSMUST00000111243.1	5	ENSMUSG00000007107	FS	W/X	318	Atp1a4	ENSMUST00000111243.1:c.952del	ENSMUSP00000106874.1:p.Trp318GlyfsTer37	H-2-Kb	8	7	5	VSFFGSRL	VSFFWLSI	NetMHCpan	6.8	13.2	1.941	122	0.311	14.817	50.863	3.433	61.62	12.7	13.2	6.8	55.30189331	19.71242255	46.42372661	16.93323751	M3	0.414285714	0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.305	122	0	0	NA	1qH3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr1	127412243	127412243	G	T	ENSMUST00000038361.10	1	ENSMUSG00000036155	missense	V/L	454	Mgat5	ENSMUST00000038361.10:c.1360G>T	ENSMUSP00000038359.4:p.Val454Leu	H-2-Kb	8	4	8	QSLVYGKL	QSLVYGKV	NetMHC	15.26	75.8	4.967	101	0.228	52.362	246.565	4.709	75.8	15.26	265.7	39.6	232.6697911	65.12383991	260.4593785	71.90183929	M3	0.771428571	0.771428571	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.242	101	53	11	0.20754717	1qE3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr1	172246733	172246733	CA	C	ENSMUST00000111243.1	5	ENSMUSG00000007107	FS	W/X	318	Atp1a4	ENSMUST00000111243.1:c.952del	ENSMUSP00000106874.1:p.Trp318GlyfsTer37	H-2-Kb	8	21	0	WMLSFSLL	NA	NetMHC	40.03	NA	NA	122	0.311	68.051	NA	NA	NA	40.03	NA	56.9	NA	87.44601036	NA	79.2027024	M3	2.071428571	2.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.305	122	0	0	NA	1qH3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr1	164257135	164257135	T	C	ENSMUST00000044021.11	1	ENSMUSG00000040918	missense	V/A	198	Slc19a2	ENSMUST00000044021.11:c.593T>C	ENSMUSP00000037561.5:p.Val198Ala	H-2-Kb	8	6	6	ISLTCASV	ISLTCVSV	NetMHC	51.16	308.97	6.039	153	0.222	78.087	277.713	3.556	308.97	51.16	437.3	155.2	246.456343	85.25895396	204.5219854	70.91530907	M3	1.428571429	1.471428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.222	153	14	1	0.071428571	1qH2.2	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.950678188	sgMsh2	cell line
chr1	92573497	92573497	T	C	ENSMUST00000214239.1	5	ENSMUSG00000058904	missense	F/L	109	Olfr1413	ENSMUST00000214239.1:c.325T>C	ENSMUSP00000150792.1:p.Phe109Leu	H-2-Kb	8	9	3	QFLFFSLL	QFFFFSLL	NetMHCpan	54.9	24.2	0.441	174	0.241	76.332	26.545	0.348	33.77	77.72	24.2	54.9	17.93659491	74.94454029	28.88949831	124.9510759	M3	2.714285714	2.714285714	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.232	174	0	0	NA	1qD	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.993501529	sgMsh2	cell line
chr1	130655982	130655982	G	A	ENSMUST00000027657.13	1	ENSMUSG00000026405	missense	T/I	83	C4bp	ENSMUST00000027657.13:c.248C>T	ENSMUSP00000027657.7:p.Thr83Ile	H-2-Kb	8	10	2	TILKYECL	TTLKYECL	SMMPMBEC	182.28	174.88	0.959	83	0.289	207.754	228.089	1.098	260.41	219.74	261.8	309.4	195.7672319	195.7672319	174.8799418	182.2804114	M3	0.842857143	0.842857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.295	83	5	0	0	1qE4	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr1	23370041	23370041	CT	C	ENSMUST00000027343.5	3	ENSMUSG00000026158	FS	K/X	368	Ogfrl1	ENSMUST00000027343.5:c.1103del	ENSMUSP00000027343.5:p.Lys368ArgfsTer83	H-2-Kb	8	40	0	KTVLLTNL	NA	NetMHCpan	199	NA	NA	86	0.279	255.732	NA	NA	NA	241.23	NA	199	NA	275.892567	NA	270.2340064	M3	1.528571429	1.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.264	86	13	3	0.230769231	1qA5	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr1	37807068	37807068	T	C	ENSMUST00000041815.14	1	ENSMUSG00000060771	missense	I/V	326	Tsga10	ENSMUST00000041815.14:c.976A>G	ENSMUSP00000048859.8:p.Ile326Val	H-2-Kb	8	11	1	VSRMRRQL	ISRMRRQL	SMMPMBEC	230.537	224.771	0.975	88	0.159	277.11	292.987	1.057	284.16	271.25	1438.9	1646.9	301.8144301	282.9697428	224.7708563	230.5366617	M3	-1.728571429	-1.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.169	88	5	0	0	1qB	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.723714476	sgMsh2	cell line
chr1	74594618	74594618	CT	C	ENSMUST00000027357.11	1	ENSMUSG00000026171	FS	K/X	245	Rnf25	ENSMUST00000027357.11:c.734del	ENSMUSP00000027357.5:p.Lys245ArgfsTer31	H-2-Kb	8	26	0	LAFSSLLL	NA	NetMHCpan	157.3	NA	NA	65	0.215	410.488	NA	NA	NA	334.86	NA	157.3	NA	486.1160944	NA	514.9202839	M3	2.057142857	2.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.225	65	73	17	0.232876712	1qC3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.96352519	sgMsh2	cell line
chr1	144139554	144139554	T	G	ENSMUST00000111941.1	1	ENSMUSG00000051079	missense	K/Q	142	Rgs13	ENSMUST00000111941.1:c.424A>C	ENSMUSP00000107572.1:p.Lys142Gln	H-2-Kb	8	11	1	QSEMYQQL	KSEMYQQL	SMMPMBEC	286.246	135.438	0.473	191	0.314	400.316	257.12	0.642	295.09	446.03	493.4	1564.5	219.1492557	354.6010359	135.4378341	286.246378	M3	-0.985714286	-0.985714286	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.321	191	0	0	NA	1qF	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr1	128236639	128236639	T	C	ENSMUST00000036288.10	5	ENSMUSG00000056211	missense	S/P	1097	R3hdm1	ENSMUST00000036288.10:c.3289T>C	ENSMUSP00000043103.4:p.Ser1097Pro	H-2-Kb	8	5	7	VLATFPPI	VLATFPSI	NetMHCpan	126.5	191	1.51	165	0.145	379.113	788.522	2.08	1354.05	567.82	191	126.5	773.9982879	374.7485835	803.0452175	383.4775994	M3	1.285714286	1.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.144	165	47	14	0.29787234	1qE3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.616656122	sgMsh2	cell line
chr1	46775247	46775247	A	G	ENSMUST00000189749.6	5	ENSMUSG00000101337	missense	M/V	3620	Dnah7c	ENSMUST00000189749.6:c.10858A>G	ENSMUSP00000140430.1:p.Met3620Val	H-2-Kb	8	6	6	VQQLHVFL	VQQLHMFL	SMM	187.387	144.79	0.773	279	0.226	373.332	246.921	0.661	259.02	699.81	396.4	484.4	144.7904774	187.3872337	234.8226582	262.2647967	M3	0.628571429	0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.237	279	0	0	NA	1qC1.1	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr1	92573497	92573497	T	C	ENSMUST00000214239.1	5	ENSMUSG00000058904	missense	F/L	109	Olfr1413	ENSMUST00000214239.1:c.325T>C	ENSMUSP00000150792.1:p.Phe109Leu	H-2-Kb	9	8	4	TQFLFFSLL	TQFFFFSLL	NetMHCpan	5.6	5.2	0.929	174	0.241	16.053	18.853	1.174	10.41	6.69	5.2	5.6	27.29669078	25.41616376	30.14740949	31.71392538	M3	2.714285714	2.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.232	174	0	0	NA	1qD	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.993501529	sgMsh2	cell line
chr1	74594618	74594618	CT	C	ENSMUST00000027357.11	1	ENSMUSG00000026171	FS	K/X	245	Rnf25	ENSMUST00000027357.11:c.734del	ENSMUSP00000027357.5:p.Lys245ArgfsTer31	H-2-Kb	9	24	0	TSLAFSSLL	NA	NetMHC	12.89	NA	NA	65	0.215	58.35	NA	NA	NA	12.89	NA	18.5	NA	98.19966359	NA	134.9739632	M3	2.057142857	2.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.225	65	73	17	0.232876712	1qC3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.96352519	sgMsh2	cell line
chr1	56891225	56891225	T	G	ENSMUST00000114415.9	1	ENSMUSG00000038331	missense	N/T	213	Satb2	ENSMUST00000114415.9:c.638A>C	ENSMUSP00000110057.3:p.Asn213Thr	H-2-Kb	9	4	8	VNSTYYATV	VNSTYYANV	NetMHC	12.91	6.03	0.467	142	0.282	53.822	44.025	0.818	6.03	12.91	9.3	13.4	93.34907095	111.4576803	78.74989801	94.24319478	M3	0.171428571	0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	142	2	1	0.5	1qC1.3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr1	128300744	128300744	T	C	ENSMUST00000073490.6	2	ENSMUSG00000026354	missense	N/S	1004	Lct	ENSMUST00000073490.6:c.3011A>G	ENSMUSP00000073190.6:p.Asn1004Ser	H-2-Kb	9	5	7	QGVDYYSKL	QGVDYYNKL	NetMHC	37.85	77.13	2.038	125	0.224	127.881	182.193	1.425	77.13	37.85	122.7	55.2	257.1046906	224.4450336	241.6851686	200.5626226	M3	-0.4	-0.4	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.237	125	0	0	NA	1qE3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr1	20935005	20935005	T	G	ENSMUST00000189400.6	1	ENSMUSG00000025931	missense	L/V	128	Paqr8	ENSMUST00000189400.6:c.382T>G	ENSMUSP00000141054.1:p.Leu128Val	H-2-Kb	9	3	9	ITYLTCSLV	ITYLTCSLL	NetMHC	51.11	20.64	0.404	58	0.138	138.197	48.33	0.35	20.64	51.11	27.3	120.4	69.36014622	155.9947563	94.8964574	212.4467052	M3	1.642857143	1.642857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.146	58	55	14	0.254545455	1qA4	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.62522079	sgMsh2	cell line
chr1	172246733	172246733	CA	C	ENSMUST00000111243.1	5	ENSMUSG00000007107	FS	W/X	318	Atp1a4	ENSMUST00000111243.1:c.952del	ENSMUSP00000106874.1:p.Trp318GlyfsTer37	H-2-Kb	9	23	0	LSFSLLVSL	NA	NetMHCpan	64.8	NA	NA	122	0.311	114.871	NA	NA	NA	102.36	NA	64.8	NA	127.382568	NA	136.536888	M3	2.4	2.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.305	122	0	0	NA	1qH3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr1	74594618	74594618	CT	C	ENSMUST00000027357.11	1	ENSMUSG00000026171	FS	K/X	245	Rnf25	ENSMUST00000027357.11:c.734del	ENSMUSP00000027357.5:p.Lys245ArgfsTer31	H-2-Kb	9	26	0	LAFSSLLLL	NA	SMM	159.261	NA	NA	65	0.215	204.075	NA	NA	NA	192.85	NA	215.3	NA	159.261206	NA	229.2186762	M3	2.342857143	2.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.225	65	73	17	0.232876712	1qC3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.96352519	sgMsh2	cell line
chr1	128236639	128236639	T	C	ENSMUST00000036288.10	5	ENSMUSG00000056211	missense	S/P	1097	R3hdm1	ENSMUST00000036288.10:c.3289T>C	ENSMUSP00000043103.4:p.Ser1097Pro	H-2-Kb	9	4	8	TVLATFPPI	TVLATFPSI	NetMHCpan	156.6	241.4	1.542	165	0.145	337.842	596.246	1.765	373.82	205.67	241.4	156.6	818.6721187	470.0131405	895.8803273	523.901932	M3	1.285714286	1.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.144	165	47	14	0.29787234	1qE3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.616656122	sgMsh2	cell line
chr1	85579187	85579187	CT	C	ENSMUST00000093508.6	1	ENSMUSG00000070034	FS	K/X	385	Sp110	ENSMUST00000093508.6:c.1154del	ENSMUSP00000091226.6:p.Lys385SerfsTer13	H-2-Kb	9	11	1	SAFRMRQEI	NA	NetMHC	222.54	NA	NA	123	0.089	380.963	NA	NA	NA	222.54	NA	325.3	NA	436.6264089	NA	527.5334467	M3	-0.971428571	-0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0894	123	0	0	NA	1qC5	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.382840676	sgMsh2	cell line
chr1	134746867	134746867	A	C	ENSMUST00000121990.1	1	ENSMUSG00000026452	missense	I/L	348	Syt2	ENSMUST00000121990.1:c.1042A>C	ENSMUSP00000112438.1:p.Ile348Leu	H-2-Kb	9	5	7	ESFSFELPF	ESFSFEIPF	SMM	167.923	162.222	0.966	106	0.208	212.067	238.386	1.124	256.86	267.23	260.3	199.1	162.2220929	167.9229287	219.9125427	225.0349638	M3	0.9	0.9	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.229	106	0	0	NA	1qE4	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.980654527	sgMsh2	cell line
chr1	46775247	46775247	A	G	ENSMUST00000189749.6	5	ENSMUSG00000101337	missense	M/V	3620	Dnah7c	ENSMUST00000189749.6:c.10858A>G	ENSMUSP00000140430.1:p.Met3620Val	H-2-Kb	9	11	1	VFLDQYEEL	MFLDQYEEL	SMM	216.327	554.766	2.564	279	0.226	274.502	733.154	2.671	824.73	301.12	1645	622	554.7662088	216.3266376	641.5787927	247.8848587	M3	-1.1	-0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.237	279	0	0	NA	1qC1.1	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr1	172246733	172246733	CA	C	ENSMUST00000111243.1	5	ENSMUSG00000007107	FS	W/X	318	Atp1a4	ENSMUST00000111243.1:c.952del	ENSMUSP00000106874.1:p.Trp318GlyfsTer37	H-2-Kb	9	20	0	GWMLSFSLL	NA	SMM	154.921	NA	NA	122	0.311	295.795	NA	NA	NA	319.79	NA	495.6	NA	154.920896	NA	271.8003427	M3	2.071428571	2.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.305	122	0	0	NA	1qH3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr1	172246733	172246733	CA	C	ENSMUST00000111243.1	5	ENSMUSG00000007107	FS	W/X	318	Atp1a4	ENSMUST00000111243.1:c.952del	ENSMUSP00000106874.1:p.Trp318GlyfsTer37	H-2-Kb	9	21	0	WMLSFSLLV	NA	SMM	192.801	NA	NA	122	0.311	393.804	NA	NA	NA	424.32	NA	1728.5	NA	192.8013187	NA	363.2871195	M3	2.4	2.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.305	122	0	0	NA	1qH3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr1	127412243	127412243	G	T	ENSMUST00000038361.10	1	ENSMUSG00000036155	missense	V/L	454	Mgat5	ENSMUST00000038361.10:c.1360G>T	ENSMUSP00000038359.4:p.Val454Leu	H-2-Kb	9	6	6	LVYGKLDSF	LVYGKVDSF	SMM	278.042	542.138	1.95	101	0.228	372.202	726.824	1.953	911.51	463.7	1434.9	1078.9	542.1381881	278.0417415	480.0096849	280.704904	M3	-0.471428571	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.242	101	53	11	0.20754717	1qE3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr10	5228100	5228100	T	G	ENSMUST00000215295.1	5	ENSMUSG00000096054	missense	K/N	4791	Syne1	ENSMUST00000215295.1:c.14373A>C	ENSMUSP00000150262.1:p.Lys4791Asn	H-2-Db	9	9	3	QANVNEETL	QAKVNEETL	NetMHC	39.37	362.31	9.203	59	0.39	44.8	257.197	5.741	362.31	39.37	353.1	58.3	161.2946639	43.51309752	149.8200715	46.08610447	M3	-0.957142857	-0.957142857	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.39	59	2	2	1	10qA1	chr10-3120209-80836442	3	2	1	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr1	174158781	174158781	T	C	ENSMUST00000213748.1	5	ENSMUSG00000055033	missense	F/L	3	Olfr420	ENSMUST00000213748.1:c.7T>C	ENSMUSP00000149052.1:p.Phe3Leu	H-2-Db	9	1	3	MGLSNWTTA	MGFSNWTTA	NetMHC	58.65	200.38	3.417	138	0.268	125.847	225.949	1.795	200.38	58.65	130.3	108.6	287.4881843	143.0935308	251.518538	143.7374712	M3	-0.142857143	-0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.263	138	0	0	NA	1qH3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr10	81271396	81271396	T	C	ENSMUST00000220297.1	5	ENSMUSG00000004931	missense	I/T	291	Apba3	ENSMUST00000220297.1:c.872T>C	ENSMUSP00000151985.1:p.Ile291Thr	H-2-Db	9	6	6	HALQTTSYI	HALQTISYI	NetMHC	170.73	199.37	1.168	64	0.25	494.592	394.302	0.797	199.37	170.73	229.4	338.2	702.4574131	702.4574131	559.2036533	650.9835285	M3	0.185714286	0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.279	64	50	14	0.28	10qC1	chr10-80852660-129526639	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr10	27235785	27235785	CA	C	ENSMUST00000092639.11	5	ENSMUSG00000019899	FS	F/X	746	Lama2	ENSMUST00000092639.11:c.2238del	ENSMUSP00000090304.5:p.Phe746LeufsTer25	H-2-Db	9	12	0	VAFVNHVSA	NA	SMMPMBEC	186.883	NA	NA	45	0.267	199.684	NA	NA	NA	214.1	NA	210.3	NA	189.0688576	NA	186.8830873	M3	0.785714286	1.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.288	45	0	0	NA	10qA4	chr10-3120209-80836442	3	2	1	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr10	27235785	27235785	CA	C	ENSMUST00000092639.11	5	ENSMUSG00000019899	FS	F/X	746	Lama2	ENSMUST00000092639.11:c.2238del	ENSMUSP00000090304.5:p.Phe746LeufsTer25	H-2-Db	9	19	0	SALLMQKPV	NA	SMM	193.028	NA	NA	45	0.267	282.384	NA	NA	NA	561.15	NA	362.2	NA	193.0278618	NA	202.5676081	M3	0.671428571	0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.288	45	0	0	NA	10qA4	chr10-3120209-80836442	3	2	1	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr1	175153188	175153188	T	C	ENSMUST00000195324.5	5	ENSMUSG00000026527	missense	Y/C	90	Rgs7	ENSMUST00000195324.5:c.269A>G	ENSMUSP00000141380.1:p.Tyr90Cys	H-2-Db	9	7	5	AAHGCFFPI	AAHGYFFPI	NetMHCpan	376.9	606.1	1.608	155	0.277	430.644	828.956	1.925	2188.87	824.3	606.1	376.9	791.8082091	435.1309752	866.1039116	426.1573665	M3	1.057142857	1.157142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.276	155	0	0	NA	1qH3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr10	50754122	50754122	G	T	ENSMUST00000035606.9	5	ENSMUSG00000038774	missense	S/I	1769	Ascc3	ENSMUST00000035606.9:c.5306G>T	ENSMUSP00000036726.8:p.Ser1769Ile	H-2-Kb	8	8	4	MNPIYYSL	MNPSYYSL	NetMHC	10.83	12.27	1.133	103	0.369	32.613	36.465	1.118	12.27	10.83	28.9	21.7	44.02911945	43.52512229	62.62388407	64.23030732	M3	-0.028571429	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.368	103	34	8	0.235294118	10qB3	chr10-3120209-80836442	3	2	1	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr1	174041991	174041991	C	T	ENSMUST00000214690.1	5	ENSMUSG00000045381	missense	L/F	14	Olfr433	ENSMUST00000214690.1:c.40C>T	ENSMUSP00000149005.1:p.Leu14Phe	H-2-Kb	8	7	5	RTFIFAGF	RTFILAGF	NetMHC	11.47	340.48	29.684	154	0.273	27.277	357.183	13.095	340.48	11.47	171.8	19.5	482.7696948	45.7867692	373.8866857	35.05419514	M3	1.942857143	1.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.262	154	0	0	NA	1qH3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr1	174448814	174448814	A	G	ENSMUST00000194229.2	3	ENSMUSG00000066671	missense	M/V	64	Olfr220	ENSMUST00000194229.2:c.190A>G	ENSMUSP00000141919.1:p.Met64Val	H-2-Kb	8	11	1	VYFFLSHL	MYFFLSHL	NetMHCpan	9.4	18.4	1.957	161	0.211	45.872	102.23	2.229	79.22	33.03	18.4	9.4	125.2391179	58.71377443	128.7478543	60.77710368	M3	1.128571429	1.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.209	161	0	0	NA	1qH3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.895007843	sgMsh2	cell line
chr10	27235785	27235785	CA	C	ENSMUST00000092639.11	5	ENSMUSG00000019899	FS	F/X	746	Lama2	ENSMUST00000092639.11:c.2238del	ENSMUSP00000090304.5:p.Phe746LeufsTer25	H-2-Kb	8	15	0	VNHVSALL	NA	NetMHC	78.77	NA	NA	45	0.267	119.512	NA	NA	NA	78.77	NA	88.8	NA	150.2242346	NA	171.2931516	M3	0.871428571	0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.288	45	0	0	NA	10qA4	chr10-3120209-80836442	3	2	1	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr10	34044091	34044091	G	A	ENSMUST00000048052.6	1	ENSMUSG00000039508	missense	A/V	60	Calhm4	ENSMUST00000048052.6:c.179C>T	ENSMUSP00000042466.5:p.Ala60Val	H-2-Kb	8	4	8	SAFLVVPV	SAFLVVPA	NetMHC	93.28	1313.85	14.085	84	0.31	117.213	797.972	6.808	1313.85	93.28	868.6	112.6	727.3442335	121.8260042	658.7793843	137.0061303	M3	2.771428571	2.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.323	84	0	0	NA	10qB1	chr10-3120209-80836442	3	2	1	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr10	80931054	80931054	C	T	ENSMUST00000015456.9	1	ENSMUSG00000015312	missense	L/F	58	Gadd45b	ENSMUST00000015456.9:c.172C>T	ENSMUSP00000015456.8:p.Leu58Phe	H-2-Kb	8	7	5	VVLCFLAI	VVLCLLAI	NetMHCpan	67	931.1	13.897	55	0.236	109.566	1162.243	10.608	1671.74	130.41	931.1	67	1103.417837	104.6501849	1221.068422	114.482736	M3	3.342857143	3.342857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.274	55	53	20	0.377358491	10qC1	chr10-80852660-129526639	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr10	79743534	79743534	T	C	ENSMUST00000020580.12	1	ENSMUSG00000020329	missense	T/A	128	Polrmt	ENSMUST00000020580.12:c.382A>G	ENSMUSP00000020580.6:p.Thr128Ala	H-2-Kb	8	5	7	LTQEFWAL	LTQEFWTL	SMM	129.045	214.655	1.663	64	0.438	166.469	236.66	1.422	958.43	286.43	196.6	168.6	214.6545013	129.0446488	258.6663888	164.3387578	M3	-0.028571429	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.407	64	30	9	0.3	10qC1	chr10-3120209-80836442	3	2	1	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr10	34044091	34044091	G	A	ENSMUST00000048052.6	1	ENSMUSG00000039508	missense	A/V	60	Calhm4	ENSMUST00000048052.6:c.179C>T	ENSMUSP00000042466.5:p.Ala60Val	H-2-Kb	8	8	4	VVPVLILL	VVPALILL	NetMHC	305.21	396.64	1.3	84	0.31	381.081	414.946	1.089	396.64	305.21	390.4	346.5	433.2514252	415.6616909	541.6765067	459.9811133	M3	3.242857143	3.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.323	84	0	0	NA	10qB1	chr10-3120209-80836442	3	2	1	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr1	173937892	173937892	AT	A	ENSMUST00000129829.7	1	ENSMUSG00000039997	FS	M/X	39	Ifi203	ENSMUST00000129829.7:c.115del	ENSMUSP00000122424.1:p.Met39CysfsTer24	H-2-Kb	9	16	0	IGFSWRTGL	NA	NetMHC	12.97	NA	NA	113	0.106	71.775	NA	NA	NA	12.97	NA	13.5	NA	130.0498932	NA	148.3371737	M3	-0.1	-9.52E-17	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1062	113	37	0	0	1qH3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.45478389	sgMsh2	cell line
chr1	174250687	174250687	C	A	ENSMUST00000214725.1	5	ENSMUSG00000050788	missense	R/M	80	Olfr419	ENSMUST00000214725.1:c.239G>T	ENSMUSP00000149512.1:p.Arg80Met	H-2-Kb	9	8	4	IIPMMLSGL	IIPRMLSGL	NetMHC	37.12	30.55	0.823	123	0.252	167.699	194.431	1.159	30.55	37.12	107.6	103.6	281.2613131	231.7981684	383.0451784	291.9106903	M3	1.228571429	2.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.263	123	0	0	NA	1qH3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr1	174448814	174448814	A	G	ENSMUST00000194229.2	3	ENSMUSG00000066671	missense	M/V	64	Olfr220	ENSMUST00000194229.2:c.190A>G	ENSMUSP00000141919.1:p.Met64Val	H-2-Kb	9	10	2	PVYFFLSHL	PMYFFLSHL	SMM	29.793	13.744	0.461	161	0.211	37.756	27.523	0.729	44.85	51.57	32.8	30.3	13.74390042	29.79270937	22.24590099	45.21161284	M3	1.128571429	1.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.209	161	0	0	NA	1qH3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.895007843	sgMsh2	cell line
chr1	173595209	173595209	T	A	ENSMUST00000097462.8	1	ENSMUSG00000073491	missense	K/M	30	Ifi213	ENSMUST00000097462.8:c.89A>T	ENSMUSP00000095070.2:p.Lys30Met	H-2-Kb	9	5	7	YNFRALMSL	YNFRALKSL	NetMHCpan	44.6	122.2	2.74	152	0.145	204.63	446.159	2.18	350.18	75.75	122.2	44.6	542.1381881	333.5108752	697.02764	452.1161284	M3	1.257142857	1.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.165	152	0	0	NA	1qH3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.706585139	sgMsh2	cell line
chr1	173677774	173677774	A	T	ENSMUST00000085876.11	1	ENSMUSG00000066677	missense	K/M	30	Ifi208	ENSMUST00000085876.11:c.89A>T	ENSMUSP00000083039.3:p.Lys30Met	H-2-Kb	9	5	7	YNFRALMSL	YNFRALKSL	NetMHCpan	44.6	122.2	2.74	258	0.089	204.63	446.159	2.18	350.18	75.75	122.2	44.6	542.1381881	333.5108752	697.02764	452.1161284	M3	1.257142857	1.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.085	258	0	0	NA	1qH3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.363998405	sgMsh2	cell line
chr10	28981546	28981546	T	C	ENSMUST00000015663.6	1	ENSMUSG00000015519	missense	N/S	205	2310057J18Rik	ENSMUST00000015663.6:c.614A>G	ENSMUSP00000015663.6:p.Asn205Ser	H-2-Kb	9	10	2	LSYLWEAHA	LNYLWEAHA	NetMHC	76.96	130.41	1.695	86	0.349	254.092	276.207	1.087	130.41	76.96	339.3	286.8	280.61443	263.6999212	271.8003427	244.4837509	M3	-0.214285714	0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.371	86	0	0	NA	10qA4	chr10-3120209-80836442	3	2	1	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr10	50754122	50754122	G	T	ENSMUST00000035606.9	5	ENSMUSG00000038774	missense	S/I	1769	Ascc3	ENSMUST00000035606.9:c.5306G>T	ENSMUSP00000036726.8:p.Ser1769Ile	H-2-Kb	9	7	5	IMNPIYYSL	IMNPSYYSL	NetMHCpan	106.8	122.5	1.147	103	0.369	213.697	155.456	0.727	120.49	198.25	122.5	106.8	188.4126249	229.1447967	231.3396105	261.9690589	M3	-0.028571429	0.457142857	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.368	103	34	8	0.235294118	10qB3	chr10-3120209-80836442	3	2	1	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr10	19849510	19849510	A	G	ENSMUST00000059805.5	1	ENSMUSG00000050473	missense	L/P	200	Slc35d3	ENSMUST00000059805.5:c.599T>C	ENSMUSP00000060589.4:p.Leu200Pro	H-2-Kb	9	4	8	IAVSATPPL	IAVSATPLL	NetMHCpan	274.8	607.2	2.21	59	0.475	365.277	632.215	1.731	657.23	359.78	607.2	274.8	472.1826226	370.7746213	755.5270188	542.312981	M3	0.728571429	1.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.442	59	0	0	NA	10qA3	chr10-3120209-80836442	3	2	1	0.96	4.111040811	NA	2	1	sgMsh2	cell line
chr1	194751529	194751529	G	T	ENSMUST00000027952.11	1	ENSMUSG00000026640	missense	D/Y	629	Plxna2	ENSMUST00000027952.11:c.1885G>T	ENSMUSP00000027952.5:p.Asp629Tyr	H-2-Kb	9	11	1	YWFGLELQL	DWFGLELQL	SMM	191.915	475.456	2.477	66	0.288	340.82	1223.579	3.59	1750.13	443.27	3402.6	806.9	475.4556362	191.9154771	697.02764	238.3691237	M3	0.971428571	0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.267	66	7	1	0.142857143	1qH6	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr10	34044091	34044091	G	A	ENSMUST00000048052.6	1	ENSMUSG00000039508	missense	A/V	60	Calhm4	ENSMUST00000048052.6:c.179C>T	ENSMUSP00000042466.5:p.Ala60Val	H-2-Kb	9	4	8	SAFLVVPVL	SAFLVVPAL	NetMHCpan	260.6	103.6	0.398	84	0.31	456.597	235.848	0.517	123.27	447.34	103.6	260.6	348.4255546	491.0322312	376.053816	465.8541836	M3	3.057142857	3.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.323	84	0	0	NA	10qB1	chr10-3120209-80836442	3	2	1	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr1	182341335	182341335	G	T	ENSMUST00000051431.9	1	ENSMUSG00000047539	missense	S/R	85	Fbxo28	ENSMUST00000051431.9:c.255C>A	ENSMUSP00000054718.4:p.Ser85Arg	H-2-Kb	9	5	7	MSYDEIRQL	MSYDEISQL	NetMHCpan	157.9	95.7	0.606	33	0.273	330.936	175.147	0.529	291.06	459.17	95.7	157.9	180.7631913	336.5968133	169.531342	325.2744865	M3	-1.142857143	-1.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.267	33	74	3	0.040540541	1qH5	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr1	192847134	192847134	A	G	ENSMUST00000155579.7	1	ENSMUSG00000016262	missense	Y/H	125	Sertad4	ENSMUST00000155579.7:c.373T>C	ENSMUSP00000116176.1:p.Tyr125His	H-2-Kb	9	10	2	VHLRRSVLI	VYLRRSVLI	SMM	451.97	325.919	0.721	81	0.235	477.751	393.431	0.824	435.1	490.72	734	686.4	325.9192408	451.9704069	351.7628732	464.7827487	M3	0.928571429	0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.247	81	13	2	0.153846154	1qH6	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr10	23897365	23897365	T	C	ENSMUST00000041416.7	1	ENSMUSG00000037440	missense	Y/H	97	Vnn1	ENSMUST00000041416.7:c.289T>C	ENSMUSP00000040599.7:p.Tyr97His	H-2-Kb	9	7	5	TIYPHLEEI	TIYPYLEEI	NetMHCpan	162.8	59.8	0.367	45	0.244	280.695	187.481	0.668	155.05	490.72	59.8	162.8	228.6177783	285.1740477	219.9125427	276.216743	M3	-0.685714286	-0.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.256	45	153	38	0.248366013	10qA4	chr10-3120209-80836442	3	2	1	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr1	185323752	185323752	A	G	ENSMUST00000027921.10	1	ENSMUSG00000026618	missense	M/T	205	Iars2	ENSMUST00000027921.10:c.614T>C	ENSMUSP00000027921.4:p.Met205Thr	H-2-Kb	9	3	9	SAFVRWGVT	SAFVRWGVM	SMMPMBEC	196.449	52.997	0.27	94	0.245	432.451	57.053	0.132	65.61	668.72	51.3	596.3	61.10967866	268.6024688	52.99684305	196.4490803	M3	0.671428571	1.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.259	94	115	31	0.269565217	1qH5	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr1	175153188	175153188	T	C	ENSMUST00000195324.5	5	ENSMUSG00000026527	missense	Y/C	90	Rgs7	ENSMUST00000195324.5:c.269A>G	ENSMUSP00000141380.1:p.Tyr90Cys	H-2-Kb	9	7	5	AAHGCFFPI	AAHGYFFPI	NetMHCpan	475.8	43.5	0.091	155	0.277	498.69	151.709	0.304	152.67	731.8	43.5	475.8	152.7953016	511.811453	150.7474589	485.5679351	M3	1.057142857	1.157142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.276	155	0	0	NA	1qH3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr11	61449691	61449691	A	G	ENSMUST00000054927.13	1	ENSMUSG00000010086	missense	S/P	561	Rnf112	ENSMUST00000054927.13:c.1681T>C	ENSMUSP00000056464.7:p.Ser561Pro	H-2-Db	9	6	6	KAFMDPYTM	KAFMDSYTM	NetMHC	143.52	155.09	1.081	42	0.262	339.983	369.651	1.087	155.09	143.52	128.2	144.7	617.4758832	539.0387667	584.2113633	535.2664216	M3	-0.071428571	-0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.273	42	0	0	NA	11qB2	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr11	43835686	43835686	T	C	ENSMUST00000067258.8	1	ENSMUSG00000050541	missense	S/G	135	Adra1b	ENSMUST00000067258.8:c.403A>G	ENSMUSP00000070200.2:p.Ser135Gly	H-2-Db	9	7	5	ASILGLCAI	ASILSLCAI	SMMPMBEC	393.161	265.809	0.676	79	0.228	445.671	273.24	0.613	280.67	577.5	248.5	460.2	294.86281	431.1416704	265.8091949	393.1606098	M3	2.928571429	2.928571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.238	79	1	0	0	11qB1.1	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr10	129607852	129607852	T	C	ENSMUST00000214584.2	2	ENSMUSG00000052012	missense	I/V	210	Olfr796	ENSMUST00000214584.2:c.628A>G	ENSMUSP00000150534.1:p.Ile210Val	H-2-Kb	8	9	3	IMVPFSLI	IMIPFSLI	NetMHCpan	32.2	18.4	0.571	87	0.115	209.526	110.911	0.529	30.07	61.17	18.4	32.2	191.7520431	366.2182643	194.4195797	357.8821189	M3	2.114285714	2.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.121	87	0	0	NA	10qD3	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	sgMsh2	cell line
chr11	34688463	34688463	A	T	ENSMUST00000093193.11	1	ENSMUSG00000020143	missense	L/M	708	Dock2	ENSMUST00000093193.11:c.2122T>A	ENSMUSP00000090884.5:p.Leu708Met	H-2-Kb	8	9	3	ATMAYKKL	ATLAYKKL	NetMHCpan	62.7	80.7	1.287	135	0.252	117.441	94.582	0.805	84.03	96.29	80.7	62.7	118.7790917	204.0515979	105.1332282	138.5925865	M3	-0.328571429	-0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.224	135	0	0	NA	11qA4	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	0.959242856	sgMsh2	cell line
chr10	117671739	117671739	A	G	ENSMUST00000020399.5	1	ENSMUSG00000020183	missense	N/D	254	Cpm	ENSMUST00000020399.5:c.760A>G	ENSMUSP00000020399.5:p.Asn254Asp	H-2-Kb	8	11	1	DGYSWYPL	NGYSWYPL	SMMPMBEC	105.133	66.182	0.63	121	0.364	111.803	58.341	0.522	44.26	117.5	50.5	215.1	76.51384027	106.106014	66.18201718	105.1332282	M3	-0.357142857	-0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.331	121	6	4	0.666666667	10qD2	chr10-80852660-129526639	4	2	2	0.96	4.111040811	NA	2	1	sgMsh2	cell line
chr10	129607852	129607852	T	C	ENSMUST00000214584.2	2	ENSMUSG00000052012	missense	I/V	210	Olfr796	ENSMUST00000214584.2:c.628A>G	ENSMUSP00000150534.1:p.Ile210Val	H-2-Kb	8	6	6	VVFIMVPF	VVFIMIPF	NetMHC	148.63	165.64	1.114	87	0.115	165.363	211.076	1.276	165.64	148.63	211.9	149.7	273.3631687	250.4609364	210.2519343	181.0256018	M3	2.685714286	2.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.121	87	0	0	NA	10qD3	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	sgMsh2	cell line
chr11	72058021	72058021	G	A	ENSMUST00000075258.12	1	ENSMUSG00000040543	missense	R/W	769	Pitpnm3	ENSMUST00000075258.12:c.2305C>T	ENSMUSP00000074737.6:p.Arg769Trp	H-2-Kb	8	9	3	VVWHWQDL	VVRHWQDL	NetMHCpan	164	1200.7	7.321	94	0.266	222.002	907.754	4.089	1202.31	270.69	1200.7	164	614.8086937	260.4593785	592.570463	183.5439188	M3	-0.571428571	-0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.262	94	2	1	0.5	11qB4	chr11-69590981-82929860	4	4	0	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr10	129607852	129607852	T	C	ENSMUST00000214584.2	2	ENSMUSG00000052012	missense	I/V	210	Olfr796	ENSMUST00000214584.2:c.628A>G	ENSMUSP00000150534.1:p.Ile210Val	H-2-Kb	8	4	8	ATVVFIMV	ATVVFIMI	SMMPMBEC	243.635	386.136	1.585	87	0.115	269.657	495.56	1.838	508.35	273.4	730.2	947.8	482.7696948	265.9132635	386.1357391	243.6351806	M3	3.014285714	3.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.121	87	0	0	NA	10qD3	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	sgMsh2	cell line
chr11	69478799	69478799	T	G	ENSMUST00000108659.1	5	ENSMUSG00000005237	missense	E/A	1617	Dnah2	ENSMUST00000108659.1:c.4850A>C	ENSMUSP00000104299.1:p.Glu1617Ala	H-2-Kb	8	6	6	SSSKWAAV	SSSKWEAV	NetMHC	389.22	5810.43	14.928	93	0.172	411.521	4252.471	10.334	5810.43	389.22	5555.5	961.1	2949.442949	422.4156501	2908.975074	400.6268017	M3	0.2	0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.185	93	0	0	NA	11qB3	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	0.792231823	sgMsh2	cell line
chr11	49341357	49341357	CT	C	ENSMUST00000215014.1	5	ENSMUSG00000045421	FS	L/X	275	Olfr1390	ENSMUST00000215014.1:c.829del	ENSMUSP00000151059.1:p.Tyr277IlefsTer11	H-2-Kb	8	8	6	FVALFILL	FVALFYII	SMM	181.443	1785.418	9.84	252	0.194	354.925	2147.623	6.051	3065.65	490.7	1973.9	713.2	1785.418375	181.4429089	2321.346655	219.1492557	M3	3.528571429	3.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.213	252	0	0	NA	11qB1.2	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	0.91213718	sgMsh2	cell line
chr10	129437268	129437268	T	C	ENSMUST00000204529.2	3	ENSMUSG00000095696	missense	L/P	152	Olfr786	ENSMUST00000204529.2:c.455T>C	ENSMUSP00000145099.1:p.Leu152Pro	H-2-Kb	8	10	2	FPIIFPAL	FLIIFPAL	SMM	114.747	118.506	1.033	188	0.223	378.842	170.833	0.451	219.84	610.54	261.3	732.8	118.5059074	114.746646	121.8260042	147.1431334	M3	2.028571429	2.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.23	188	0	0	NA	10qD3	chr10-80852660-129526639	4	2	2	0.96	4.111040811	NA	1	0.984936861	sgMsh2	cell line
chr10	130472110	130472110	CA	C	ENSMUST00000164227.3	5	ENSMUSG00000091511	FS	L/X	753	Vmn2r87	ENSMUST00000164227.3:c.2258del	ENSMUSP00000129215.2:p.Leu753TrpfsTer25	H-2-Kb	8	15	0	ASLWLSWL	NA	SMM	312.421	NA	NA	297	0.296	407.641	NA	NA	NA	717.62	NA	457.4	NA	312.4208431	NA	357.8821189	M3	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.307	297	0	0	NA	10qD3	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	sgMsh2	cell line
chr10	130472110	130472110	CA	C	ENSMUST00000164227.3	5	ENSMUSG00000091511	FS	L/X	753	Vmn2r87	ENSMUST00000164227.3:c.2258del	ENSMUSP00000129215.2:p.Leu753TrpfsTer25	H-2-Kb	8	19	0	LSWLGTFL	NA	SMMPMBEC	307.426	NA	NA	297	0.296	420.694	NA	NA	NA	1101.66	NA	318.1	NA	523.2870654	NA	307.4255792	M3	1.085714286	1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.307	297	0	0	NA	10qD3	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	sgMsh2	cell line
chr10	121596189	121596189	T	C	ENSMUST00000039810.7	5	ENSMUSG00000034667	missense	I/V	935	Xpot	ENSMUST00000039810.7:c.2803A>G	ENSMUSP00000043488.7:p.Ile935Val	H-2-Kb	9	10	2	IVQEFCQAL	IIQEFCQAL	NetMHC	29.19	27.49	0.942	90	0.233	210.663	225.97	1.073	27.49	29.19	92.1	72.9	359.8404656	348.4255546	390.1665199	383.0451784	M3	0.057142857	0.5	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.269	90	87	14	0.16091954	10qD2	chr10-80852660-129526639	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr11	59976887	59976887	A	C	ENSMUST00000102693.8	1	ENSMUSG00000000301	missense	F/V	140	Pemt	ENSMUST00000102693.8:c.418T>G	ENSMUSP00000099754.2:p.Phe140Val	H-2-Kb	9	11	1	VVLSSFYAL	FVLSSFYAL	NetMHCpan	37.4	216.3	5.783	58	0.103	69.634	257.114	3.692	158.46	38.55	216.3	37.4	297.9270937	100.7186741	487.8092149	164.1534444	M3	1.328571429	1.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.123	58	8	0	0	11qB1.3	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	0.526727104	sgMsh2	cell line
chr11	34688463	34688463	A	T	ENSMUST00000093193.11	1	ENSMUSG00000020143	missense	L/M	708	Dock2	ENSMUST00000093193.11:c.2122T>A	ENSMUSP00000090884.5:p.Leu708Met	H-2-Kb	9	11	1	MAYKKLMTV	LAYKKLMTV	NetMHCpan	53.3	93.4	1.752	135	0.252	111.459	136.253	1.222	92.9	63.29	93.4	53.3	179.1059444	159.628341	191.9773533	191.9773533	M3	0.014285714	0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.224	135	0	0	NA	11qA4	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	0.959242856	sgMsh2	cell line
chr10	129754686	129754686	T	A	ENSMUST00000213379.1	5	ENSMUSG00000050478	missense	M/L	255	Olfr807	ENSMUST00000213379.1:c.763A>T	ENSMUSP00000149172.1:p.Met255Leu	H-2-Kb	9	3	9	ISYGSCIFL	ISYGSCIFM	NetMHC	67.13	154.95	2.308	158	0.234	106.451	174.575	1.64	154.95	67.13	136.5	69.6	202.3531643	153.854428	194.2003463	143.301257	M3	1.585714286	1.585714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	158	0	0	NA	10qD3	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	sgMsh2	cell line
chr11	34688463	34688463	A	T	ENSMUST00000093193.11	1	ENSMUSG00000020143	missense	L/M	708	Dock2	ENSMUST00000093193.11:c.2122T>A	ENSMUSP00000090884.5:p.Leu708Met	H-2-Kb	9	3	9	IQQHFSATM	IQQHFSATL	NetMHC	108.3	43.99	0.406	135	0.252	432.806	302.966	0.7	43.99	108.3	87	183.1	518.9314595	682.5115418	629.8686601	853.5913393	M3	-0.242857143	-0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.224	135	0	0	NA	11qA4	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	0.959242856	sgMsh2	cell line
chr11	67211360	67211360	C	A	ENSMUST00000124516.7	1	ENSMUSG00000056328	missense	R/S	826	Myh1	ENSMUST00000124516.7:c.2476C>A	ENSMUSP00000117569.1:p.Arg826Ser	H-2-Kb	9	6	6	IQYNVSAFM	IQYNVRAFM	NetMHC	125.35	144.71	1.154	212	0.241	385.659	420.869	1.091	144.71	125.35	131.9	140.2	830.0609824	631.1171763	697.02764	656.5230826	M3	0.728571429	0.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.248	212	0	0	NA	11qB3	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr11	61546578	61546578	A	C	ENSMUST00000179936.7	1	ENSMUSG00000001036	missense	I/S	56	Epn2	ENSMUST00000179936.7:c.167T>G	ENSMUSP00000136950.1:p.Ile56Ser	H-2-Kb	9	6	6	VAFSESMSM	VAFSEIMSM	NetMHCpan	123.9	82.3	0.664	72	0.264	145.532	154.465	1.061	140.62	155.51	82.3	123.9	168.310031	135.5532704	254.8296748	263.7849417	M3	0.1	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.29	72	106	24	0.226415094	11qB2	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr10	129437268	129437268	T	C	ENSMUST00000204529.2	3	ENSMUSG00000095696	missense	L/P	152	Olfr786	ENSMUST00000204529.2:c.455T>C	ENSMUSP00000145099.1:p.Leu152Pro	H-2-Kb	9	9	3	SFPIIFPAL	SFLIIFPAL	NetMHCpan	184.1	208.8	1.134	188	0.223	392.051	277.016	0.707	198.11	192.39	208.8	184.1	345.2311699	591.7114865	364.9639766	689.0488306	M3	2.028571429	2.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.23	188	0	0	NA	10qD3	chr10-80852660-129526639	4	2	2	0.96	4.111040811	NA	1	0.984936861	sgMsh2	cell line
chr11	66145269	66145269	A	T	ENSMUST00000080665.9	5	ENSMUSG00000056752	missense	D/E	438	Dnah9	ENSMUST00000080665.9:c.1314T>A	ENSMUSP00000079494.3:p.Asp438Glu	H-2-Kb	9	5	7	LVFVRLEGF	LVFVRLDGF	SMM	175.837	200.498	1.14	108	0.185	217.209	246.217	1.134	266.36	239.77	675.3	414.5	200.4979793	175.8368925	226.073678	194.6480243	M3	0.742857143	1.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe	3	0.202	108	0	0	NA	11qB3	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	0.865031504	sgMsh2	cell line
chr11	67243457	67243457	T	G	ENSMUST00000018632.10	5	ENSMUSG00000057003	missense	F/V	313	Myh4	ENSMUST00000018632.10:c.937T>G	ENSMUSP00000018632.4:p.Phe313Val	H-2-Kb	9	11	1	VAYVSQGEI	FAYVSQGEI	SMM	235.565	696.803	2.958	326	0.209	269.225	768.373	2.854	913.58	300.05	675.5	255.8	696.8029811	235.5645857	839.9433576	282.6506575	M3	-0.114285714	0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.197	326	0	0	NA	11qB3	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	0.843619833	sgMsh2	cell line
chr10	130472110	130472110	CA	C	ENSMUST00000164227.3	5	ENSMUSG00000091511	FS	L/X	753	Vmn2r87	ENSMUST00000164227.3:c.2258del	ENSMUSP00000129215.2:p.Leu753TrpfsTer25	H-2-Kb	9	9	3	GSWLWGASL	NA	NetMHCpan	270.2	NA	NA	297	0.296	374.862	NA	NA	NA	300.72	NA	270.2	NA	563.7804345	NA	449.0037829	M3	0.914285714	0.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.307	297	0	0	NA	10qD3	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	sgMsh2	cell line
chr10	129607852	129607852	T	C	ENSMUST00000214584.2	2	ENSMUSG00000052012	missense	I/V	210	Olfr796	ENSMUST00000214584.2:c.628A>G	ENSMUSP00000150534.1:p.Ile210Val	H-2-Kb	9	8	4	FIMVPFSLI	FIMIPFSLI	NetMHC	320.19	366.5	1.145	87	0.115	499.992	572.651	1.145	366.5	320.19	686.7	592.5	493.298733	407.4834739	652.0036095	662.5978159	M3	2.114285714	2.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.121	87	0	0	NA	10qD3	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	sgMsh2	cell line
chr10	129607852	129607852	T	C	ENSMUST00000214584.2	2	ENSMUSG00000052012	missense	I/V	210	Olfr796	ENSMUST00000214584.2:c.628A>G	ENSMUSP00000150534.1:p.Ile210Val	H-2-Kb	9	9	3	IMVPFSLIV	IMIPFSLIV	SMM	262.488	179.519	0.684	87	0.115	336.977	230.435	0.684	315.61	482.15	141.8	265.4	179.5188262	262.4883301	281.3519957	408.5545015	M3	2.442857143	2.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.121	87	0	0	NA	10qD3	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	sgMsh2	cell line
chr10	129437268	129437268	T	C	ENSMUST00000204529.2	3	ENSMUSG00000095696	missense	L/P	152	Olfr786	ENSMUST00000204529.2:c.455T>C	ENSMUSP00000145099.1:p.Leu152Pro	H-2-Kb	9	5	7	SWLVSFPII	SWLVSFLII	SMM	268.602	322.931	1.202	188	0.223	495.553	719.896	1.453	850.61	484.99	1080	514.6	322.9311952	268.6024688	589.1827186	506.1159219	M3	2.485714286	2.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.23	188	0	0	NA	10qD3	chr10-80852660-129526639	4	2	2	0.96	4.111040811	NA	1	0.984936861	sgMsh2	cell line
chr11	7139118	7139118	A	G	ENSMUST00000020706.4	2	ENSMUSG00000020431	missense	M/V	511	Adcy1	ENSMUST00000020706.4:c.1531A>G	ENSMUSP00000020706.4:p.Met511Val	H-2-Kb	9	3	9	VCYLLVQLV	VCYLLVQLM	SMMPMBEC	317.139	191.977	0.605	65	0.185	444.8	282.549	0.635	336.48	498.66	451.7	1247.2	228.6177783	390.9399022	191.9773533	317.1392538	M3	2.142857143	2.142857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.195	65	0	0	NA	11qA1	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	0.835055165	sgMsh2	cell line
chr10	130472110	130472110	CA	C	ENSMUST00000164227.3	5	ENSMUSG00000091511	FS	L/X	753	Vmn2r87	ENSMUST00000164227.3:c.2258del	ENSMUSP00000129215.2:p.Leu753TrpfsTer25	H-2-Kb	9	17	0	LWLSWLGTF	NA	SMM	245.533	NA	NA	297	0.296	456.634	NA	NA	NA	499.03	NA	2307.2	NA	245.5330734	NA	414.2380608	M3	1.085714286	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.307	297	0	0	NA	10qD3	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	sgMsh2	cell line
chr11	66145267	66145267	C	T	ENSMUST00000080665.9	5	ENSMUSG00000056752	missense	G/D	439	Dnah9	ENSMUST00000080665.9:c.1316G>A	ENSMUSP00000079494.3:p.Gly439Asp	H-2-Kb	9	4	8	LVFVRLDDF	LVFVRLDGF	SMMPMBEC	346.937	226.074	0.652	108	0.185	476.883	246.217	0.516	266.36	547.22	675.3	1626.6	200.4979793	406.5462879	226.073678	346.9365057	M3	0.3	1.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe	3	0.202	108	0	0	NA	11qB3	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	0.865031504	sgMsh2	cell line
chr11	98488928	98488928	GT	G	ENSMUST00000103141.3	5	ENSMUSG00000018168	FS	K/X	171	Ikzf3	ENSMUST00000103141.3:c.513del	ENSMUSP00000099430.3:p.Lys171AsnfsTer88	H-2-Db	9	57	0	RSTRNAAEL	NA	NetMHC	122.01	NA	NA	81	0.259	138.556	NA	NA	NA	122.01	NA	192	NA	131.7103792	NA	145.4018727	M3	-0.685714286	-0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.257	81	0	0	NA	11qD	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr12	55490467	55490467	A	G	ENSMUST00000021413.8	1	ENSMUSG00000021025	missense	M/T	279	Nfkbia	ENSMUST00000021413.8:c.836T>C	ENSMUSP00000021413.7:p.Met279Thr	H-2-Db	9	4	8	LTLENLQTL	LTLENLQML	NetMHCpan	91.9	614.9	6.691	84	0.167	148.476	602.259	4.056	939.09	126.1	614.9	91.9	555.4180636	170.8519736	589.6170044	179.295752	M3	0.028571429	0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.158	84	153	25	0.163398693	12qC1	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.6766088	sgMsh2	cell line
chr11	98250323	98250323	GA	G	ENSMUST00000107538.1	1	ENSMUSG00000003119	FS	G/X	1463	Cdk12	ENSMUST00000107538.1:c.4392del	ENSMUSP00000103162.1:p.Lys1464AsnfsTer40	H-2-Db	9	38	0	NALKDSFPI	NA	NetMHC	176.49	NA	NA	41	0.293	314.485	NA	NA	NA	176.49	NA	291.2	NA	337.7691648	NA	345.5970287	M3	0.185714286	0.185714286	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;Vardict	3	0.3	41	28	8	0.285714286	11qD	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr12	4974217	4974217	T	C	ENSMUST00000045664.6	5	ENSMUSG00000052812	missense	I/T	689	Atad2b	ENSMUST00000045664.6:c.2066T>C	ENSMUSP00000047445.5:p.Ile689Thr	H-2-Db	9	6	6	RSFNNTLAV	RSFNNILAV	NetMHCpan	115.4	84.3	0.731	144	0.201	200.079	185.23	0.926	216.04	227.83	84.3	115.4	189.5047063	189.5047063	180.9547551	210.6541406	M3	0.7	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.212	144	37	8	0.216216216	12qA1.1	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.907854846	sgMsh2	cell line
chr11	97181660	97181660	T	C	ENSMUST00000001479.4	1	ENSMUSG00000001440	missense	T/A	150	Kpnb1	ENSMUST00000001479.4:c.448A>G	ENSMUSP00000001479.3:p.Thr150Ala	H-2-Db	9	10	2	SALEAIGYI	STLEAIGYI	NetMHCpan	418.4	2939.3	7.025	184	0.228	447.643	3137.803	7.01	4778.06	436.49	2939.3	418.4	2982.771604	458.7963984	3292.835233	576.1956828	M3	1.342857143	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.237	184	469	107	0.228144989	11qD	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr11	94465827	94465827	A	T	ENSMUST00000100561.9	1	ENSMUSG00000020866	missense	I/N	161	Cacna1g	ENSMUST00000100561.9:c.482T>A	ENSMUSP00000098127.3:p.Ile161Asn	H-2-Db	9	7	5	FFIVNAGML	FFIVIAGML	SMM	159.448	7544.318	47.315	66	0.242	338.685	16773.919	49.527	27545.88	456.28	22744.2	1425.2	7544.318243	159.4483392	10803.63741	221.0904583	M3	1.757142857	1.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.259	66	9	1	0.111111111	11qD	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr11	116607343	116607343	T	C	ENSMUST00000103028.7	1	ENSMUSG00000020806	missense	N/S	10	Rhbdf2	ENSMUST00000103028.7:c.29A>G	ENSMUSP00000099317.1:p.Asn10Ser	H-2-Db	9	3	8	SADKNGSSL	SADKNGSNL	NetMHCpan	264.2	514.2	1.946	42	0.214	491.14	788.8	1.606	1790.39	859.51	514.2	264.2	838.7257951	517.1541332	738.8733457	465.1253395	M3	-1.3	-1.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.219	42	17	2	0.117647059	11qE2	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	0.937831185	sgMsh2	cell line
chr12	54656435	54656435	A	G	ENSMUST00000056228.7	1	ENSMUSG00000044408	missense	Y/H	17	Sptssa	ENSMUST00000056228.7:c.49T>C	ENSMUSP00000053671.6:p.Tyr17His	H-2-Kb	8	8	4	SWFHYQYL	SWFYYQYL	NetMHC	11.41	7.92	0.694	23	0.13	23.09	19.89	0.861	7.92	11.41	17.2	26.3	22.58083514	22.42538976	25.10383085	23.75417764	M3	-0.514285714	-0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.173	23	126	23	0.182539683	12qC1	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.740843813	sgMsh2	cell line
chr11	87433817	87433817	CG	C	ENSMUST00000060835.11	5	ENSMUSG00000010342	FS	R/X	3	Tex14	ENSMUST00000060835.11:c.13del	ENSMUSP00000054444.5:p.Ala5LeufsTer33	H-2-Kb	8	3	3	RGLLFQSL	NA	NetMHC	20.57	NA	NA	46	0.304	61.471	NA	NA	NA	20.57	NA	53.8	NA	69.1416915	NA	77.39982879	M3	1.357142857	1.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.337	46	0	0	NA	11qC	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	2	1	sgMsh2	cell line
chr12	31490488	31490488	CT	C	ENSMUST00000101499.9	1	ENSMUSG00000020659	FS	K/X	140	Cbll1	ENSMUST00000101499.9:c.420del	ENSMUSP00000099038.3:p.Gly141GlufsTer51	H-2-Kb	8	19	0	VVILCSGL	NA	NetMHC	67.21	NA	NA	233	0.163	94.115	NA	NA	NA	67.21	NA	80.4	NA	130.2386842	NA	107.830098	M3	2.514285714	2.571428571	FALSE	FALSE	FALSE	1	FALSE	0	Strelka2;Vardict	2	0.1631	233	80	19	0.2375	12qA2	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.698448704	sgMsh2	cell line
chr11	115250142	115250142	CG	C	ENSMUST00000106554.1	5	ENSMUSG00000020734	FS	P/X	1050	Grin2c	ENSMUST00000106554.1:c.3149del	ENSMUSP00000102164.1:p.Pro1050ArgfsTer151	H-2-Kb	8	66	0	VTPALAHV	NA	NetMHC	83.26	NA	NA	16	0.438	197.593	NA	NA	NA	83.26	NA	522.2	NA	181.0256018	NA	214.1608096	M3	0.871428571	0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.444	16	0	0	NA	11qE2	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	2	1	sgMsh2	cell line
chr12	54656435	54656435	A	G	ENSMUST00000056228.7	1	ENSMUSG00000044408	missense	Y/H	17	Sptssa	ENSMUST00000056228.7:c.49T>C	ENSMUSP00000053671.6:p.Tyr17His	H-2-Kb	8	10	2	FHYQYLLV	FYYQYLLV	SMM	99.024	159.492	1.611	23	0.13	125.397	208.113	1.66	235.2	126.13	373	172.5	159.4924025	99.0238939	181.0256018	124.6636964	M3	0.357142857	0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.173	23	126	23	0.182539683	12qC1	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.740843813	sgMsh2	cell line
chr11	115822071	115822071	GA	G	ENSMUST00000021134.9	1	ENSMUSG00000020781	FS	R/X	461	Tsen54	ENSMUST00000021134.9:c.1388del	ENSMUSP00000021134.3:p.Asn463ThrfsTer28	H-2-Kb	8	8	6	ATFRKTAL	ATFRKNSP	NetMHCpan	107.7	12589.3	116.892	78	0.205	143.935	9990.463	69.41	19710.55	129.11	12589.3	107.7	7391.626265	173.6760767	7290.209351	158.7596015	M3	-0.2	-0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.225	78	37	5	0.135135135	11qE2	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	0.96352519	sgMsh2	cell line
chr11	119440808	119440808	A	G	ENSMUST00000093902.11	5	ENSMUSG00000070327	missense	H/R	2282	Rnf213	ENSMUST00000093902.11:c.6845A>G	ENSMUSP00000091429.5:p.His2282Arg	H-2-Kb	8	5	7	MTFIGFRL	MTFIGFHL	NetMHCpan	34.6	36.6	1.058	200	0.23	68.355	87.554	1.281	140.39	135.54	36.6	34.6	96.99291239	74.94454029	78.11600059	61.76465217	M3	1.185714286	1.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.237	200	18	4	0.222222222	11qE2	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr11	98152821	98152821	AC	A	ENSMUST00000092735.11	1	ENSMUSG00000018160	FS	V/X	595	Med1	ENSMUST00000092735.11:c.1783del	ENSMUSP00000090411.5:p.Val595PhefsTer7	H-2-Kb	8	9	3	FMFFFSFF	FMVFFFFF	SMMPMBEC	119.053	1020.328	8.57	28	0.464	135.28	1271.189	9.397	1321.31	138.51	4097.2	147.2	1221.068422	132.0504848	1020.328459	119.0529058	M3	2.157142857	2.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.442	28	43	11	0.255813953	11qD	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	2	1	sgMsh2	cell line
chr12	13390999	13390999	AC	A	ENSMUST00000042953.9	5	ENSMUSG00000020576	FS	T/X	1110	Nbas	ENSMUST00000042953.9:c.3329del	ENSMUSP00000036082.8:p.Thr1110SerfsTer31	H-2-Kb	8	30	0	VAWKTSTL	NA	NetMHCpan	102.8	NA	NA	87	0.161	200.5	NA	NA	NA	164.55	NA	102.8	NA	289.5609548	NA	236.4503711	M3	-0.2	-0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.156	87	20	0	0	12qA1.1	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.668044132	sgMsh2	cell line
chr11	96581344	96581344	A	C	ENSMUST00000107662.8	1	ENSMUSG00000057058	missense	T/P	148	Skap1	ENSMUST00000107662.8:c.442A>C	ENSMUSP00000103289.2:p.Thr148Pro	H-2-Kb	8	7	5	SRYSPAHL	SRYSTAHL	SMM	174.88	169.723	0.971	182	0.198	210.344	161.194	0.766	151.88	220.36	782.2	1165.3	169.7227266	174.8799418	152.6651821	200.3272365	M3	-0.828571429	-0.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.189	182	0	0	NA	11qD	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	0.80936116	sgMsh2	cell line
chr11	96581344	96581344	A	C	ENSMUST00000107662.8	1	ENSMUSG00000057058	missense	T/P	148	Skap1	ENSMUST00000107662.8:c.442A>C	ENSMUSP00000103289.2:p.Thr148Pro	H-2-Kb	8	9	3	YSPAHLAL	YSTAHLAL	SMM	236.45	371.313	1.57	182	0.198	284.425	775.994	2.728	1039.72	259.55	1012.8	309.3	371.3128679	236.4503711	539.1877292	350.5419514	M3	0.8	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.189	182	0	0	NA	11qD	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	0.80936116	sgMsh2	cell line
chr11	96581344	96581344	A	C	ENSMUST00000107662.8	1	ENSMUSG00000057058	missense	T/P	148	Skap1	ENSMUST00000107662.8:c.442A>C	ENSMUSP00000103289.2:p.Thr148Pro	H-2-Kb	8	5	7	SSSRYSPA	SSSRYSTA	NetMHC	265.14	1280.31	4.829	182	0.198	396.626	1171.908	2.955	1280.31	265.14	1961.3	1087.9	1063.506136	425.3436955	963.2521787	367.908651	M3	-1.142857143	-1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.189	182	0	0	NA	11qD	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	0.80936116	sgMsh2	cell line
chr11	98488928	98488928	GT	G	ENSMUST00000103141.3	5	ENSMUSG00000018168	FS	K/X	171	Ikzf3	ENSMUST00000103141.3:c.513del	ENSMUSP00000099430.3:p.Lys171AsnfsTer88	H-2-Kb	8	68	0	RTLTWGTL	NA	SMMPMBEC	208.324	NA	NA	81	0.259	253.828	NA	NA	NA	456.15	NA	261.2	NA	246.456343	NA	208.324333	M3	0.6	0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.257	81	0	0	NA	11qD	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr11	116023510	116023510	C	A	ENSMUST00000106454.7	5	ENSMUSG00000016559	missense	G/V	103	H3f3b	ENSMUST00000106454.7:c.308G>T	ENSMUSP00000102062.1:p.Gly103Val	H-2-Kb	8	11	1	VLFEDTNL	GLFEDTNL	SMMPMBEC	139.553	1457.941	10.447	112	0.232	257.434	4738.713	18.408	11220.79	524.1	7134.6	368.4	2342.825811	146.4670721	1457.94117	139.5532644	M3	-0.114285714	-0.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.238	112	1097	263	0.239744758	11qE2	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr12	54685943	54685943	TG	T	ENSMUST00000161592.7	1	ENSMUSG00000054302	FS	H/X	127	Eapp	ENSMUST00000161592.7:c.381del	ENSMUSP00000123698.1:p.His127GlnfsTer52	H-2-Kb	8	53	0	SLFQTVML	NA	SMMPMBEC	306.719	NA	NA	154	0.312	372.068	NA	NA	NA	617.01	NA	379.6	NA	364.5356443	NA	306.71852	M3	1.757142857	1.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.321	154	219	75	0.342465753	12qC1	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	2	1	sgMsh2	cell line
chr11	117772845	117772845	T	C	ENSMUST00000026659.9	1	ENSMUSG00000025572	missense	I/V	514	Tmc6	ENSMUST00000026659.9:c.1540A>G	ENSMUSP00000026659.3:p.Ile514Val	H-2-Kb	8	10	2	LVLKMAVL	LILKMAVL	SMMPMBEC	395.13	281.67	0.713	58	0.155	457.257	401.56	0.878	565.93	825.08	490.7	423.9	312.4208431	490.6140712	281.6696149	395.1299959	M3	2.257142857	2.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.186	58	18	6	0.333333333	11qE2	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	0.796514157	sgMsh2	cell line
chr11	94334532	94334532	A	G	ENSMUST00000107818.8	5	ENSMUSG00000020864	missense	T/A	130	Ankrd40	ENSMUST00000107818.8:c.388A>G	ENSMUSP00000103448.2:p.Thr130Ala	H-2-Kb	8	6	6	FPFIYAPA	FPFIYTPA	SMMPMBEC	111.363	324.893	2.917	78	0.282	485.551	890.63	1.834	2975.36	844.12	1418.4	870.2	362.8607551	126.9813676	324.8927349	111.3627636	M3	0.914285714	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.291	78	156	49	0.314102564	11qD	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr12	54656435	54656435	A	G	ENSMUST00000056228.7	1	ENSMUSG00000044408	missense	Y/H	17	Sptssa	ENSMUST00000056228.7:c.49T>C	ENSMUSP00000053671.6:p.Tyr17His	H-2-Kb	9	7	5	MSWFHYQYL	MSWFYYQYL	NetMHC	6.37	4.2	0.659	23	0.13	17.303	13.699	0.792	4.2	6.37	5.1	6.6	24.04971865	29.99922256	22.29718309	28.00593007	M3	-0.514285714	-0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.173	23	126	23	0.182539683	12qC1	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.740843813	sgMsh2	cell line
chr12	51774736	51774736	A	C	ENSMUST00000042052.8	5	ENSMUSG00000035247	missense	L/V	1057	Hectd1	ENSMUST00000042052.8:c.3169T>G	ENSMUSP00000046766.8:p.Leu1057Val	H-2-Kb	9	3	9	SSFVFVRKV	SSFVFVRKL	NetMHC	11.42	5.76	0.504	155	0.148	102.897	45.252	0.44	5.76	11.42	5.5	15.2	84.74420308	190.5943402	91.88613834	205.7074402	M3	1.4	1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.157	155	312	68	0.217948718	12qB3	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.672326466	sgMsh2	cell line
chr12	58268262	58268262	A	C	ENSMUST00000062254.3	NA	ENSMUSG00000045930	missense	S/R	191	Clec14a	ENSMUST00000062254.3:c.573T>G	ENSMUSP00000054451.2:p.Ser191Arg	H-2-Kb	9	8	4	SNLRFQAPF	SNLSFQAPF	NetMHC	14.13	18.91	1.338	94	0.16	74.015	58.402	0.789	18.91	14.13	36.8	28.6	80.00368662	119.4290561	128.0117987	149.3653979	M3	0.228571429	0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.155	94	0	0	NA	12qC1	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.663761798	sgMsh2	cell line
chr12	54656435	54656435	A	G	ENSMUST00000056228.7	1	ENSMUSG00000044408	missense	Y/H	17	Sptssa	ENSMUST00000056228.7:c.49T>C	ENSMUSP00000053671.6:p.Tyr17His	H-2-Kb	9	8	4	SWFHYQYLL	SWFYYQYLL	NetMHCpan	28.4	25.4	0.894	23	0.13	37.373	28.8	0.771	32.2	40.93	25.4	28.4	25.29938709	33.81504736	53.73410257	64.01032025	M3	0.157142857	0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.173	23	126	23	0.182539683	12qC1	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.740843813	sgMsh2	cell line
chr11	98488928	98488928	GT	G	ENSMUST00000103141.3	5	ENSMUSG00000018168	FS	K/X	171	Ikzf3	ENSMUST00000103141.3:c.513del	ENSMUSP00000099430.3:p.Lys171AsnfsTer88	H-2-Kb	9	62	0	AAELFFRTL	NA	NetMHC	89.08	NA	NA	81	0.259	200.048	NA	NA	NA	89.08	NA	91.6	NA	330.4532291	NA	308.4963287	M3	0.642857143	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.257	81	0	0	NA	11qD	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr11	96581344	96581344	A	C	ENSMUST00000107662.8	1	ENSMUSG00000057058	missense	T/P	148	Skap1	ENSMUST00000107662.8:c.442A>C	ENSMUSP00000103289.2:p.Thr148Pro	H-2-Kb	9	9	3	YSPAHLALM	YSTAHLALM	NetMHC	132.73	417.47	3.145	182	0.198	249.158	480.61	1.929	417.47	132.73	534.5	167.1	455.1033161	331.2150024	506.1159219	397.4202571	M3	1.185714286	1.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.189	182	0	0	NA	11qD	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	0.80936116	sgMsh2	cell line
chr11	87035223	87035223	T	C	ENSMUST00000020804.7	1	ENSMUSG00000061666	missense	T/A	299	Gdpd1	ENSMUST00000020804.7:c.895A>G	ENSMUSP00000020804.7:p.Thr299Ala	H-2-Kb	9	9	3	VMADYPTKL	VMTDYPTKL	NetMHCpan	134	233	1.739	84	0.286	178.725	248.628	1.391	288.51	222.06	233	134	258.8868552	177.8729877	238.3691237	179.5767056	M3	-0.771428571	0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.288	84	165	42	0.254545455	11qC	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr12	51999859	51999859	T	G	ENSMUST00000021339.7	1	ENSMUSG00000020956	missense	N/H	66	Dtd2	ENSMUST00000021339.7:c.196A>C	ENSMUSP00000021339.7:p.Asn66His	H-2-Kb	9	6	6	VNTLLHVKL	VNTLLNVKL	NetMHCpan	212.6	1257.5	5.915	64	0.172	402.088	1117.492	2.779	1647.25	460.42	1257.5	212.6	977.4847712	462.4981501	708.3534281	343.7557727	M3	1.114285714	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.197	64	83	18	0.21686747	12qC1	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.843619833	sgMsh2	cell line
chr11	115822071	115822071	GA	G	ENSMUST00000021134.9	1	ENSMUSG00000020781	FS	R/X	461	Tsen54	ENSMUST00000021134.9:c.1388del	ENSMUSP00000021134.3:p.Asn463ThrfsTer28	H-2-Kb	9	7	7	VATFRKTAL	VATFRKNSP	SMMPMBEC	250.179	1950.967	7.798	78	0.205	378.231	10698.049	28.284	19445.13	487.24	24150.8	959.7	1180.61963	269.2216614	1950.967344	250.1785091	M3	-0.2	-0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.225	78	37	5	0.135135135	11qE2	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	0.96352519	sgMsh2	cell line
chr11	98152821	98152821	AC	A	ENSMUST00000092735.11	1	ENSMUSG00000018160	FS	V/X	595	Med1	ENSMUST00000092735.11:c.1783del	ENSMUSP00000090411.5:p.Val595PhefsTer7	H-2-Kb	9	7	5	LEFMFFFSF	LEFMVFFFF	SMM	152.093	1559.948	10.257	28	0.464	326.93	3466.529	10.603	5373.11	500.31	11273.5	2074.9	1559.947563	152.0932709	1337.365144	153.5500634	M3	2.157142857	2.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.442	28	43	11	0.255813953	11qD	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	2	1	sgMsh2	cell line
chr11	102886351	102886351	A	G	ENSMUST00000100369.3	NA	ENSMUSG00000075510	missense	H/R	327	Fam187a	ENSMUST00000100369.3:c.980A>G	ENSMUSP00000097938.3:p.His327Arg	H-2-Kb	9	7	5	VFIDRGNHL	VFIDHGNHL	SMMPMBEC	265.003	291.239	1.099	155	0.232	419.914	404.055	0.962	516.87	568.74	648.9	885.7	280.61443	271.0878168	291.2393144	265.0025177	M3	-0.971428571	-0.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.236	155	0	0	NA	11qE1	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr13	52611067	52611067	CG	C	ENSMUST00000120135.7	1	ENSMUSG00000021457	FS	G/X	77	Syk	ENSMUST00000120135.7:c.233del	ENSMUSP00000113852.1:p.Gly78AlafsTer45	H-2-Db	9	7	6	YAISGAGPM	YAISGGRAH	NetMHC	17.97	37520.91	2087.975	55	0.273	118.625	19737.582	166.386	37520.91	17.97	29181.5	78.9	9324.380769	158.3507045	10293.66428	163.1435844	M3	0.714285714	0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.239	55	9	0	0	13qA5	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr13	44923269	44923269	T	C	ENSMUST00000072329.14	1	ENSMUSG00000057531	missense	M/V	231	Dtnbp1	ENSMUST00000072329.14:c.691A>G	ENSMUSP00000072170.7:p.Met231Val	H-2-Db	9	10	2	SVEVNVDVL	SMEVNVDVL	NetMHCpan	224.8	73.1	0.325	76	0.197	276.933	66.317	0.239	31.1	515.13	73.1	224.8	67.08416215	293.5080385	65.54959308	260.3574444	M3	0.842857143	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.216	76	48	13	0.270833333	13qA5	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	0.924984183	sgMsh2	cell line
chr13	22293238	22293238	C	A	ENSMUST00000228382.1	NA	ENSMUSG00000069295	missense	L/I	16	Vmn1r196	ENSMUST00000228382.1:c.46C>A	ENSMUSP00000154358.1:p.Leu16Ile	H-2-Kb	8	9	3	VFILFTGL	VFLLFTGL	NetMHC	7.89	7.99	1.013	143	0.189	11.402	10.125	0.888	7.99	7.89	21.8	19.8	9.241447486	10.73346637	11.00880046	12.07090967	M3	2.371428571	2.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.201	143	0	0	NA	13qA3.1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	0.86074917	sgMsh2	cell line
chr12	73108786	73108786	G	A	ENSMUST00000043208.7	1	ENSMUSG00000034460	missense	P/L	469	Six4	ENSMUST00000043208.7:c.1406C>T	ENSMUSP00000036150.6:p.Pro469Leu	H-2-Kb	8	4	8	SVVTFTTL	SVVTFTTP	NetMHCpan	12.7	5794.2	456.236	127	0.205	37.441	3696.4	98.725	11329	13.26	5794.2	12.7	1583.944645	65.42443789	1598.600704	61.62259741	M3	1.842857143	1.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.205	127	3	0	0	12qC3	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.877878507	sgMsh2	cell line
chr12	76564382	76564382	T	C	ENSMUST00000075249.5	1	ENSMUSG00000052609	missense	V/A	231	Plekhg3	ENSMUST00000075249.5:c.692T>C	ENSMUSP00000074729.4:p.Val231Ala	H-2-Kb	8	10	2	RALKYHLL	RVLKYHLL	NetMHCpan	46.6	48	1.03	99	0.162	81.358	92.716	1.14	72.52	51.61	48	46.6	112.911974	111.1066364	114.482736	123.8055176	M3	0.685714286	0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.17	99	87	23	0.264367816	12qC3	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.72799681	sgMsh2	cell line
chr12	108361203	108361203	T	C	ENSMUST00000021684.5	1	ENSMUSG00000021259	missense	F/L	425	Cyp46a1	ENSMUST00000021684.5:c.1273T>C	ENSMUSP00000021684.4:p.Phe425Leu	H-2-Kb	8	11	1	LTYFPFSL	FTYFPFSL	NetMHCpan	22.8	31.8	1.395	153	0.216	102.142	85.132	0.833	67.05	60.82	31.8	22.8	103.2143305	143.4630303	134.1961326	157.666708	M3	0.714285714	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.222	153	0	0	NA	12qF1	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.950678188	sgMsh2	cell line
chr12	111543168	111543168	T	G	ENSMUST00000166123.8	1	ENSMUSG00000021282	missense	H/Q	323	Eif5	ENSMUST00000166123.8:c.969T>G	ENSMUSP00000126825.1:p.His323Gln	H-2-Kb	8	8	4	VAMQQAQL	VAMHQAQL	NetMHC	67.27	126.63	1.882	159	0.088	102.994	139.297	1.352	126.63	67.27	106.8	125.6	159.4924025	101.0974031	151.9637493	104.8914285	M3	-0.171428571	-0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.093	159	766	119	0.15535248	12qF1	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.398257079	sgMsh2	cell line
chr12	113357518	113357518	T	C	ENSMUST00000223179.1	NA	ENSMUSG00000076615	missense	K/R	374	Ighg3	ENSMUST00000223179.1:c.1120A>G	ENSMUSP00000152559.1:p.Lys374Arg	H-2-Kb	8	10	2	VRWIFSSV	VKWIFSSV	NetMHC	129.56	120.6	0.931	74	0.243	141.385	108.131	0.765	120.6	129.56	160.3	222.3	95.66211974	149.1900983	91.56721386	133.5795574	M3	0.642857143	0.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.258	74	0	0	NA	12qF1	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr13	24069691	24069691	C	T	ENSMUST00000072889.11	1	ENSMUSG00000021338	missense	R/H	819	Carmil1	ENSMUST00000072889.11:c.2456G>A	ENSMUSP00000072662.5:p.Arg819His	H-2-Kb	8	7	5	ISIPHTFV	ISIPRTFV	NetMHCpan	135	551.6	4.086	137	0.248	143.522	942.936	6.57	1291.3	147.17	551.6	135	911.4650073	139.8749679	974.4061133	185.6692572	M3	0.742857143	0.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.252	137	42	12	0.285714286	13qA3.1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr12	84162393	84162393	AG	A	ENSMUST00000110294.1	5	ENSMUSG00000042507	FS	P/X	645	Elmsan1	ENSMUST00000110294.1:c.1934del	ENSMUSP00000105923.1:p.Pro645LeufsTer58	H-2-Kb	8	57	0	IALKSPRL	NA	NetMHC	156.56	NA	NA	51	0.176	204.907	NA	NA	NA	156.56	NA	203.4	NA	206.414404	NA	241.9580078	M3	-0.2	-0.1	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1765	51	15	1	0.066666667	12qD1	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.755831982	sgMsh2	cell line
chr13	21142224	21142224	TA	T	ENSMUST00000216039.2	3	ENSMUSG00000045474	FS	Y/X	278	Olfr1368	ENSMUST00000216039.2:c.832del	ENSMUSP00000149549.1:p.Tyr278ThrfsTer11	H-2-Kb	8	6	6	FFTLFTPL	FFTLFYTI	SMM	62.05	779.363	12.56	124	0.242	125.007	1579.98	12.639	2251.93	176.89	2178.8	173.5	779.3633877	62.04974485	981.1603738	76.51384027	M3	1.457142857	1.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.254	124	0	0	NA	13qA2	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr12	84162393	84162393	AG	A	ENSMUST00000110294.1	5	ENSMUSG00000042507	FS	P/X	645	Elmsan1	ENSMUST00000110294.1:c.1934del	ENSMUSP00000105923.1:p.Pro645LeufsTer58	H-2-Kb	8	60	0	KSPRLSSL	NA	NetMHC	187.45	NA	NA	51	0.176	295.716	NA	NA	NA	187.45	NA	313.8	NA	279.7306149	NA	311.7022951	M3	-0.128571429	-0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1765	51	15	1	0.066666667	12qD1	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.755831982	sgMsh2	cell line
chr12	103241372	103241372	A	G	ENSMUST00000074416.9	1	ENSMUSG00000041669	missense	C/R	21	Prima1	ENSMUST00000074416.9:c.61T>C	ENSMUSP00000074017.3:p.Cys21Arg	H-2-Kb	8	6	6	SLLLHRAL	SLLLHCAL	SMM	187.819	205.466	1.094	76	0.118	282.105	293.337	1.04	488	344.05	343.6	379	205.466016	187.8192059	243.0748352	220.1608027	M3	1.328571429	1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.13	76	0	0	NA	12qE	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.556703443	sgMsh2	cell line
chr12	79261656	79261656	C	T	ENSMUST00000021547.7	1	ENSMUSG00000066440	missense	D/N	1705	Zfyve26	ENSMUST00000021547.7:c.5113G>A	ENSMUSP00000021547.6:p.Asp1705Asn	H-2-Kb	8	6	6	IGFTLNEV	IGFTLDEV	NetMHCpan	303.9	1187.3	3.907	128	0.141	375.252	970.102	2.585	1333.11	383.96	1187.3	303.9	696.209588	367.908651	752.9046857	382.5956254	M3	0.385714286	0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.149	128	32	4	0.125	12qC3	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.638067793	sgMsh2	cell line
chr13	13002264	13002264	T	G	ENSMUST00000110594.3	1	ENSMUSG00000079092	missense	N/T	26	Prl2c2	ENSMUST00000110594.3:c.77A>C	ENSMUSP00000106224.2:p.Asn26Thr	H-2-Kb	8	5	7	SSLLWKTV	SSLLWKNV	SMMPMBEC	367.062	128.452	0.35	182	0.198	405.23	136.123	0.336	80.4	413.06	202.2	397.4	143.7937467	427.3069928	128.4517425	367.0624846	M3	0.785714286	0.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.203	182	2	2	1	13qA1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	0.869313838	sgMsh2	cell line
chr13	9662244	9662244	CA	C	ENSMUST00000174552.7	1	ENSMUSG00000048264	FS	K/X	1468	Dip2c	ENSMUST00000174552.7:c.4405del	ENSMUSP00000133806.1:p.Ser1469ValfsTer14	H-2-Kb	8	12	1	VSQNVLSL	NA	SMM	218.645	NA	NA	149	0.215	371.865	NA	NA	NA	425.5	NA	654	NA	218.6452264	NA	318.2291802	M3	0.457142857	0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.237	149	19	0	0	13qA1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr12	116142882	116142882	A	G	ENSMUST00000011315.9	1	ENSMUSG00000011171	missense	Q/R	366	Vipr2	ENSMUST00000011315.9:c.1097A>G	ENSMUSP00000011315.3:p.Gln366Arg	H-2-Kb	8	6	6	CVGSFRGL	CVGSFQGL	SMMPMBEC	373.027	572.453	1.535	218	0.165	441.993	621.177	1.405	761.75	617.03	669.9	510.1	519.6847826	373.8866857	572.4532166	373.0267702	M3	0.671428571	0.671428571	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.159	218	0	0	NA	12qF2	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.680891134	sgMsh2	cell line
chr13	23482748	23482748	T	A	ENSMUST00000110433.9	1	ENSMUSG00000053216	missense	Q/L	229	Btn2a2	ENSMUST00000110433.9:c.686A>T	ENSMUSP00000106063.3:p.Gln229Leu	H-2-Kb	8	4	8	VNNTLLSL	VNNTLLSQ	SMM	292.914	11796.142	40.272	115	0.209	426.356	16762.841	39.317	21729.54	834.12	25042.5	477.1	11796.14222	292.9139126	6756.783445	375.6124682	M3	0.414285714	0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.224	115	0	0	NA	13qA3.1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	0.959242856	sgMsh2	cell line
chr12	72477207	72477207	A	G	ENSMUST00000162159.7	1	ENSMUSG00000021090	missense	N/S	729	Lrrc9	ENSMUST00000162159.7:c.2186A>G	ENSMUSP00000124394.1:p.Asn729Ser	H-2-Kb	8	5	7	DVYHLYSL	DVYHLYNL	NetMHCpan	351.6	232.6	0.662	181	0.199	440.275	217.158	0.493	455.13	926.68	232.6	351.6	170.8991883	419.5077612	201.7158386	461.0414792	M3	0.742857143	0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.19	181	0	0	NA	12qC3	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.813643494	sgMsh2	cell line
chr12	72304133	72304133	A	T	ENSMUST00000078505.13	1	ENSMUSG00000021087	missense	F/Y	434	Rtn1	ENSMUST00000078505.13:c.1301T>A	ENSMUSP00000077594.7:p.Phe434Tyr	H-2-Kb	9	6	6	SGYVSYGHV	SGYVSFGHV	NetMHC	9.91	11.65	1.176	43	0.256	79.315	105.209	1.326	11.65	9.91	20.7	23.7	189.7186388	134.9304597	209.0499173	147.6556263	M3	0.2	0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.262	43	0	0	NA	12qC3	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr13	22293238	22293238	C	A	ENSMUST00000228382.1	NA	ENSMUSG00000069295	missense	L/I	16	Vmn1r196	ENSMUST00000228382.1:c.46C>A	ENSMUSP00000154358.1:p.Leu16Ile	H-2-Kb	9	8	4	TVFILFTGL	TVFLLFTGL	NetMHCpan	13.2	12.3	0.932	143	0.189	39.525	35.877	0.908	13.93	14	12.3	13.2	57.82424886	71.63248211	61.55310989	65.05040428	M3	2.371428571	2.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.201	143	0	0	NA	13qA3.1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	0.86074917	sgMsh2	cell line
chr13	34075091	34075091	A	T	ENSMUST00000056427.9	1	ENSMUSG00000058672	missense	C/S	239	Tubb2a	ENSMUST00000056427.9:c.715T>A	ENSMUSP00000060246.8:p.Cys239Ser	H-2-Kb	9	10	2	TSLRFPGQL	TCLRFPGQL	NetMHC	19.2	720.34	37.518	49	0.245	132.627	680.959	5.134	720.34	19.2	582.8	39.7	1300.498932	308.3968972	641.5787927	225.553723	M3	0.057142857	0.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.254	49	17	3	0.176470588	13qA3.3	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr13	21142224	21142224	TA	T	ENSMUST00000216039.2	3	ENSMUSG00000045474	FS	Y/X	278	Olfr1368	ENSMUST00000216039.2:c.832del	ENSMUSP00000149549.1:p.Tyr278ThrfsTer11	H-2-Kb	9	5	7	QFFTLFTPL	QFFTLFYTI	NetMHCpan	73.2	503.6	6.88	124	0.242	80.699	518.621	6.427	585.33	79.72	503.6	73.2	384.6892055	81.67892251	533.6419961	100.9834026	M3	1.457142857	1.457142857	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.254	124	0	0	NA	13qA2	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr12	76564382	76564382	T	C	ENSMUST00000075249.5	1	ENSMUSG00000052609	missense	V/A	231	Plekhg3	ENSMUST00000075249.5:c.692T>C	ENSMUSP00000074729.4:p.Val231Ala	H-2-Kb	9	10	2	RALKYHLLL	RVLKYHLLL	NetMHCpan	57.7	70.7	1.225	99	0.162	181.236	223.936	1.236	125.58	83.7	70.7	57.7	322.9311952	287.1507798	322.2923521	278.7725451	M3	0.971428571	0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.17	99	87	23	0.264367816	12qC3	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.72799681	sgMsh2	cell line
chr12	73108786	73108786	G	A	ENSMUST00000043208.7	1	ENSMUSG00000034460	missense	P/L	469	Six4	ENSMUST00000043208.7:c.1406C>T	ENSMUSP00000036150.6:p.Pro469Leu	H-2-Kb	9	4	8	SVVTFTTLV	SVVTFTTPV	NetMHC	133.43	58.98	0.442	127	0.205	332.202	220.794	0.665	58.98	133.43	75.9	198.7	365.6874028	465.7040341	414.2380608	577.0985724	M3	1.842857143	1.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.205	127	3	0	0	12qC3	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.877878507	sgMsh2	cell line
chr12	73108786	73108786	G	A	ENSMUST00000043208.7	1	ENSMUSG00000034460	missense	P/L	469	Six4	ENSMUST00000043208.7:c.1406C>T	ENSMUSP00000036150.6:p.Pro469Leu	H-2-Kb	9	6	6	VTFTTLVQI	VTFTTPVQI	NetMHC	182.12	518.16	2.845	127	0.205	240.023	659.413	2.747	518.16	182.12	770.1	233.3	729.6422938	309.8203926	589.1827186	246.7459312	M3	1.485714286	1.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.205	127	3	0	0	12qC3	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.877878507	sgMsh2	cell line
chr13	19352311	19352311	G	A	ENSMUST00000179181.2	NA	ENSMUSG00000076757	missense	A/T	181	Trgc4	ENSMUST00000179181.2:c.540G>A	ENSMUSP00000138488.1:p.Ala181Thr	H-2-Kb	9	4	9	VVFCLFRRT	VVFCLFRRA	NetMHCpan	194.9	147.7	0.758	136	0.257	207.656	243.647	1.173	176.66	239.79	147.7	194.9	331.2150024	213.3585248	310.6347231	201.9528563	M3	0.314285714	2.257142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.244	136	0	0	NA	13qA2	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr12	111543168	111543168	T	G	ENSMUST00000166123.8	1	ENSMUSG00000021282	missense	H/Q	323	Eif5	ENSMUST00000166123.8:c.969T>G	ENSMUSP00000126825.1:p.His323Gln	H-2-Kb	9	7	5	VVAMQQAQL	VVAMHQAQL	NetMHC	383.57	82.13	0.214	159	0.088	443.989	119.596	0.269	82.13	383.57	108.5	517.8	156.7147954	457.2039776	130.6922997	430.7745129	M3	-0.171428571	0.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.093	159	766	119	0.15535248	12qF1	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.398257079	sgMsh2	cell line
chr12	110666605	110666605	A	G	ENSMUST00000018851.13	1	ENSMUSG00000018707	missense	I/V	4617	Dync1h1	ENSMUST00000018851.13:c.13849A>G	ENSMUSP00000018851.7:p.Ile4617Val	H-2-Kb	9	3	9	LNFTRADLV	LNFTRADLI	SMMPMBEC	470.165	485.568	1.033	128	0.102	498.16	522.734	1.049	648.78	574.37	443.7	489.2	559.8993973	507.1191374	485.5679351	470.1646793	M3	0.557142857	0.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.115	128	266	28	0.105263158	12qF1	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.492468431	sgMsh2	cell line
chr13	34919785	34919785	T	C	ENSMUST00000223834.1	NA	ENSMUSG00000021414	missense	K/R	27	Fam217a	ENSMUST00000223834.1:c.80A>G	ENSMUSP00000153297.1:p.Lys27Arg	H-2-Kb	9	7	5	CAFDRASWL	CAFDKASWL	SMM	175.837	263.093	1.496	114	0.246	349.958	602.637	1.722	928.38	697.73	774.5	425.6	263.0934282	175.8368925	430.7745129	274.3152803	M3	-0.185714286	0.014285714	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.24	114	0	0	NA	13qA3.3	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr13	75878849	75878849	T	G	ENSMUST00000022078.11	1	ENSMUSG00000021589	missense	K/N	468	Rhobtb3	ENSMUST00000022078.11:c.1404A>C	ENSMUSP00000022078.5:p.Lys468Asn	H-2-Db	9	7	5	YGVSNETFL	YGVSKETFL	NetMHC	4.07	552.12	135.656	139	0.201	38.329	1708.94	44.587	552.12	4.07	1286.7	11.1	2131.179353	65.55714019	2236.505652	66.61468828	M3	0.328571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.201	139	113	30	0.265486726	13qC1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	0.86074917	sgMsh2	cell line
chr13	64794243	64794243	T	C	ENSMUST00000091554.5	5	ENSMUSG00000033063	missense	I/M	224	Cntnap3	ENSMUST00000091554.5:c.672A>G	ENSMUSP00000089140.4:p.Ile224Met	H-2-Db	9	3	9	KAMQNSGIM	KAMQNSGII	NetMHC	26.19	22.66	0.865	91	0.264	85.851	80.049	0.932	22.66	26.19	28.1	26.3	158.3507045	155.1029293	131.9988052	145.4018727	M3	0.014285714	0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.247	91	0	0	NA	13qB3	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr14	62708908	62708908	A	G	ENSMUST00000223585.1	NA	ENSMUSG00000035161	missense	V/A	388	Ints6	ENSMUST00000223585.1:c.1163T>C	ENSMUSP00000152954.1:p.Val388Ala	H-2-Db	9	4	8	VMPYNYPAL	VMPYNYPVL	NetMHC	101.83	72.21	0.709	129	0.163	145.519	164.986	1.134	72.21	101.83	219.7	295.5	158.3507045	130.5028512	171.6208308	160.5350989	M3	-0.528571429	-0.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.176	129	73	18	0.246575342	14qD1	chr14-53294676-65386686	4	2	2	0.96	4.111040811	NA	1	0.753690815	sgMsh2	cell line
chr14	50854251	50854251	AT	A	ENSMUST00000006444.8	1	ENSMUSG00000006281	FS	N/X	611	Tep1	ENSMUST00000006444.8:c.1832del	ENSMUSP00000006444.7:p.Asn611IlefsTer13	H-2-Db	9	3	9	IMIRNSKKI	IMIRNSKKN	NetMHC	235.97	28945.93	122.668	100	0.17	342.07	15283.174	44.679	28945.93	235.97	26930.8	592.5	2252.267655	285.5091296	3635.54898	398.6300187	M3	-1.085714286	-0.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.17	100	25	0	0	14qC1	chr14-7006943-52779282	4	2	2	0.96	4.111040811	NA	1	0.72799681	sgMsh2	cell line
chr14	62708908	62708908	A	G	ENSMUST00000223585.1	NA	ENSMUSG00000035161	missense	V/A	388	Ints6	ENSMUST00000223585.1:c.1163T>C	ENSMUSP00000152954.1:p.Val388Ala	H-2-Kb	8	5	7	MPYNYPAL	MPYNYPVL	SMM	13.175	31.027	2.355	129	0.163	18.272	64.778	3.545	86.23	17.28	260.5	174	31.02701531	13.17467771	43.32514252	19.26371303	M3	-0.528571429	-0.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.176	129	73	18	0.246575342	14qD1	chr14-53294676-65386686	4	2	2	0.96	4.111040811	NA	1	0.753690815	sgMsh2	cell line
chr14	52036009	52036009	A	G	ENSMUST00000214071.1	5	ENSMUSG00000044286	missense	M/T	34	Olfr221	ENSMUST00000214071.1:c.101T>C	ENSMUSP00000150675.1:p.Met34Thr	H-2-Kb	8	10	2	VTYAITVL	VMYAITVL	NetMHCpan	26.2	23.8	0.908	76	0.211	60.149	92.464	1.537	54.39	47.73	23.8	26.2	137.3219621	75.63799359	130.5389154	72.56713881	M3	1.657142857	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.235	76	0	0	NA	14qC2	chr14-7006943-52779282	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr13	100811369	100811369	CA	C	ENSMUST00000067246.5	1	ENSMUSG00000021629	FS	F/X	500	Slc30a5	ENSMUST00000067246.5:c.1500del	ENSMUSP00000065764.4:p.Phe500LeufsTer10	H-2-Kb	8	6	6	IVIAFLCL	IVIAFFVF	SMMPMBEC	37.822	251.038	6.637	81	0.222	40.717	350.893	8.618	384.95	48.89	364.7	38.9	337.0854446	42.53436955	251.0383085	37.82160895	M3	3.342857143	3.442857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.243	81	101	2	0.01980198	13qD1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr13	97172972	97172972	G	T	ENSMUST00000161639.7	1	ENSMUSG00000021666	missense	A/S	646	Gfm2	ENSMUST00000161639.7:c.1936G>T	ENSMUSP00000125656.1:p.Ala646Ser	H-2-Kb	8	10	2	VSMTLHSL	VAMTLHSL	NetMHCpan	28.1	61.5	2.189	144	0.278	63.495	166.981	2.63	129.44	49.59	61.5	28.1	230.5366617	89.89592386	204.5219854	77.39982879	M3	0.571428571	0.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.285	144	41	11	0.268292683	13qD1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr13	54221267	54221267	TC	T	ENSMUST00000038101.3	1	ENSMUSG00000034987	FS	S/X	374	Hrh2	ENSMUST00000038101.3:c.1122del	ENSMUSP00000038170.3:p.Phe375SerfsTer53	H-2-Kb	8	26	0	SNHHYISV	NA	NetMHCpan	84.2	NA	NA	71	0.211	192.438	NA	NA	NA	148.97	NA	84.2	NA	235.9065504	NA	249.310173	M3	-0.471428571	-0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.23	71	0	0	NA	13qB1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	0.984936861	sgMsh2	cell line
chr13	66956436	66956436	A	G	ENSMUST00000021990.3	1	ENSMUSG00000021518	missense	E/G	124	Ptdss1	ENSMUST00000021990.3:c.371A>G	ENSMUSP00000021990.3:p.Glu124Gly	H-2-Kb	8	6	6	LFLNFGQV	LFLNFEQV	SMMPMBEC	211.222	525.702	2.489	143	0.196	245.34	664.399	2.708	800.67	267.97	1340.6	694.6	528.128981	222.7101447	525.7024488	211.2224132	M3	0.885714286	0.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.203	143	111	32	0.288288288	13qB3	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	0.869313838	sgMsh2	cell line
chr14	13493535	13493535	T	C	ENSMUST00000070323.11	1	ENSMUSG00000056296	missense	C/R	38	Synpr	ENSMUST00000070323.11:c.112T>C	ENSMUSP00000064986.5:p.Cys38Arg	H-2-Kb	8	4	8	AMFAFATR	AMFAFATC	SMM	122.107	89.072	0.729	74	0.176	244.649	89.041	0.364	89.01	316.42	75.5	846.6	89.07175307	122.1068422	99.9401507	172.8781076	M3	0.842857143	1.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.203	74	0	0	NA	14qA1	chr14-7006943-52779282	4	2	2	0.96	4.111040811	NA	1	0.869313838	sgMsh2	cell line
chr14	61213807	61213807	G	T	ENSMUST00000119943.7	5	ENSMUSG00000048279	missense	R/M	4434	Sacs	ENSMUST00000119943.7:c.13301G>T	ENSMUSP00000113377.1:p.Arg4434Met	H-2-Kb	8	4	8	AGQTYSQM	AGQTYSQR	NetMHC	334.09	17239.17	51.6	123	0.252	473.483	10497.647	22.171	17239.17	334.09	18579.9	617.9	2683.737286	481.6593553	3756.124682	465.3074435	M3	-1.185714286	-1.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.273	123	10	0	0	14qD1	chr14-53294676-65386686	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr13	70768603	70768603	T	C	ENSMUST00000080145.12	1	ENSMUSG00000049538	missense	N/D	757	Adamts16	ENSMUST00000080145.12:c.2269A>G	ENSMUSP00000079041.6:p.Asn757Asp	H-2-Kb	8	9	3	STDQYYHM	STNQYYHM	SMM	216.142	94.567	0.438	104	0.269	313.997	101.323	0.323	85.06	399.57	164.3	648	94.56708451	216.1424152	108.0786721	228.4230889	M3	-1.657142857	-1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.289	104	0	0	NA	13qC1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr14	23436016	23436016	TA	T	ENSMUST00000188285.6	1	ENSMUSG00000063142	FS	Y/X	680	Kcnma1	ENSMUST00000188285.6:c.2038del	ENSMUSP00000140275.1:p.Tyr680ThrfsTer31	H-2-Kb	8	8	4	AFFTARPV	NA	SMM	285.588	NA	NA	57	0.211	464.476	NA	NA	NA	585.6	NA	996.8	NA	285.5880296	NA	343.3523309	M3	0.685714286	0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.233	57	0	0	NA	14qA3	chr14-7006943-52779282	4	2	2	0.96	4.111040811	NA	1	0.997783864	sgMsh2	cell line
chr14	62708908	62708908	A	G	ENSMUST00000223585.1	NA	ENSMUSG00000035161	missense	V/A	388	Ints6	ENSMUST00000223585.1:c.1163T>C	ENSMUSP00000152954.1:p.Val388Ala	H-2-Kb	9	4	8	VMPYNYPAL	VMPYNYPVL	NetMHC	15.9	42.88	2.697	129	0.163	39.951	62.164	1.556	42.88	15.9	65.7	38.3	58.62866429	41.60159675	72.31859831	58.3781059	M3	-0.528571429	-0.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.176	129	73	18	0.246575342	14qD1	chr14-53294676-65386686	4	2	2	0.96	4.111040811	NA	1	0.753690815	sgMsh2	cell line
chr13	65194254	65194254	G	A	ENSMUST00000221659.1	5	ENSMUSG00000032999	missense	H/Y	526	Nlrp4f	ENSMUST00000221659.1:c.1576C>T	ENSMUSP00000152151.1:p.His526Tyr	H-2-Kb	9	9	3	IHYKLYQCL	IHHKLYQCL	NetMHC	30.43	543.91	17.874	130	0.246	51.872	472.901	9.117	543.91	30.43	574.8	45.5	401.8925911	70.64964761	316.4098538	58.24383998	M3	0.014285714	0.014285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	130	0	0	NA	13qB3	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	0.967807524	sgMsh2	cell line
chr13	97172972	97172972	G	T	ENSMUST00000161639.7	1	ENSMUSG00000021666	missense	A/S	646	Gfm2	ENSMUST00000161639.7:c.1936G>T	ENSMUSP00000125656.1:p.Ala646Ser	H-2-Kb	9	10	2	VSMTLHSLM	VAMTLHSLM	NetMHC	38.13	69.61	1.826	144	0.278	88.418	117.312	1.327	69.61	38.13	70.9	43.1	163.7231154	134.9304597	168.3642965	133.7365144	M3	0.957142857	0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.285	144	41	11	0.268292683	13qD1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr14	62708908	62708908	A	G	ENSMUST00000223585.1	NA	ENSMUSG00000035161	missense	V/A	388	Ints6	ENSMUST00000223585.1:c.1163T>C	ENSMUSP00000152954.1:p.Val388Ala	H-2-Kb	9	5	7	MPYNYPALL	MPYNYPVLL	NetMHC	48.73	323.54	6.639	129	0.163	271.124	452.895	1.67	323.54	48.73	265.7	138.5	582.2506741	403.747643	640.1032025	472.3348608	M3	0.242857143	0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.176	129	73	18	0.246575342	14qD1	chr14-53294676-65386686	4	2	2	0.96	4.111040811	NA	1	0.753690815	sgMsh2	cell line
chr14	62708908	62708908	A	G	ENSMUST00000223585.1	NA	ENSMUSG00000035161	missense	V/A	388	Ints6	ENSMUST00000223585.1:c.1163T>C	ENSMUSP00000152954.1:p.Val388Ala	H-2-Kb	9	7	5	YNYPALLPL	YNYPVLLPL	NetMHCpan	55.6	65.7	1.182	129	0.163	116.892	188.475	1.612	170.36	87.53	65.7	55.6	206.5903351	146.2547568	242.2423104	215.8986864	M3	1.242857143	1.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.176	129	73	18	0.246575342	14qD1	chr14-53294676-65386686	4	2	2	0.96	4.111040811	NA	1	0.753690815	sgMsh2	cell line
chr13	100061007	100061007	T	A	ENSMUST00000038104.11	5	ENSMUSG00000049658	missense	I/F	957	Bdp1	ENSMUST00000038104.11:c.2869A>T	ENSMUSP00000038321.5:p.Ile957Phe	H-2-Kb	9	7	5	TTGEFCTNL	TTGEICTNL	NetMHC	96.64	2956.27	30.591	160	0.256	266.273	2897.591	10.882	2956.27	96.64	2950	149.5	2845.181656	458.2579416	2047.623004	383.0451784	M3	0.142857143	0.142857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.252	160	50	20	0.4	13qD1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr13	67542395	67542395	TA	T	ENSMUST00000181892.8	1	ENSMUSG00000095432	FS	Y/X	249	Zfp748	ENSMUST00000181892.8:c.745del	ENSMUSP00000137928.1:p.Tyr249ThrfsTer47	H-2-Kb	9	44	0	VAMPFVHSI	NA	NetMHCpan	32.9	NA	NA	120	0.192	254.832	NA	NA	NA	98.41	NA	32.9	NA	411.2538721	NA	441.8247089	M3	1.114285714	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.204	120	21	2	0.095238095	13qB3	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	0.873596172	sgMsh2	cell line
chr13	95707884	95707884	T	G	ENSMUST00000068603.7	1	ENSMUSG00000021676	missense	K/N	505	Iqgap2	ENSMUST00000068603.7:c.1515A>C	ENSMUSP00000067685.6:p.Lys505Asn	H-2-Kb	9	4	8	LFYTKSQNL	LFYTKSQKL	NetMHC	102.71	231.77	2.257	128	0.25	163.174	227.849	1.396	231.77	102.71	423.3	178.4	223.9288243	147.9483071	214.4124503	180.8214719	M3	-1.414285714	-0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe	3	0.248	128	98	22	0.224489796	13qD1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr14	20729830	20729830	C	A	ENSMUST00000223679.1	NA	ENSMUSG00000039308	missense	S/I	114	Ndst2	ENSMUST00000223679.1:c.341G>T	ENSMUSP00000153036.1:p.Ser114Ile	H-2-Kb	9	6	6	SRFRYITEL	SRFRYSTEL	NetMHCpan	100.6	138.2	1.374	142	0.218	199.505	181.841	0.911	92.82	119.04	138.2	100.6	225.4810248	279.9690348	309.920283	299.3987618	M3	0.157142857	0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.216	142	18	5	0.277777778	14qA3	chr14-7006943-52779282	4	2	2	0.96	4.111040811	NA	1	0.924984183	sgMsh2	cell line
chr13	54221267	54221267	TC	T	ENSMUST00000038101.3	1	ENSMUSG00000034987	FS	S/X	374	Hrh2	ENSMUST00000038101.3:c.1122del	ENSMUSP00000038170.3:p.Phe375SerfsTer53	H-2-Kb	9	26	0	SNHHYISVL	NA	NetMHCpan	68.7	NA	NA	71	0.211	178.271	NA	NA	NA	141.14	NA	68.7	NA	229.67303	NA	215.4021332	M3	0.571428571	0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.23	71	0	0	NA	13qB1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	0.984936861	sgMsh2	cell line
chr13	84294754	84294754	TA	T	ENSMUST00000057495.9	1	ENSMUSG00000035762	FS	L/X	446	Tmem161b	ENSMUST00000057495.9:c.1343del	ENSMUSP00000055208.7:p.Asn448ThrfsTer15	H-2-Kb	9	9	5	SSLKTSSRL	NA	NetMHC	149.93	NA	NA	123	0.325	357.985	NA	NA	NA	149.93	NA	436	NA	279.9690348	NA	463.713778	M3	-0.442857143	-0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.33	123	29	3	0.103448276	13qC3	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	2	1	sgMsh2	cell line
chr13	75878849	75878849	T	G	ENSMUST00000022078.11	1	ENSMUSG00000021589	missense	K/N	468	Rhobtb3	ENSMUST00000022078.11:c.1404A>C	ENSMUSP00000022078.5:p.Lys468Asn	H-2-Kb	9	10	2	SNETFLSFL	SKETFLSFL	NetMHC	152.36	2784.6	18.276	139	0.201	305.223	2383.314	7.808	2784.6	152.36	3434.7	227.4	1982.028979	421.8033261	1691.414308	383.0451784	M3	1.171428571	1.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.201	139	113	30	0.265486726	13qC1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	0.86074917	sgMsh2	cell line
chr13	95707886	95707886	T	G	ENSMUST00000068603.7	1	ENSMUSG00000021676	missense	K/Q	505	Iqgap2	ENSMUST00000068603.7:c.1513A>C	ENSMUSP00000067685.6:p.Lys505Gln	H-2-Kb	9	4	8	LFYTKSQQL	LFYTKSQKL	SMMPMBEC	150.401	214.412	1.426	128	0.25	157.428	227.849	1.447	231.77	154.86	423.3	361.4	223.9288243	159.9963223	214.4124503	150.4007493	M3	-1.414285714	-0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe	3	0.248	128	114	21	0.184210526	13qD1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr14	56761852	56761852	A	C	ENSMUST00000022507.12	1	ENSMUSG00000021938	missense	L/V	316	Pspc1	ENSMUST00000022507.12:c.946T>G	ENSMUSP00000022507.5:p.Leu316Val	H-2-Kb	9	11	1	VMLMRQDLM	LMLMRQDLM	SMM	117.249	337.373	2.877	116	0.172	170.678	505.031	2.959	672.69	215.68	1505.6	463.1	337.3727491	117.2492302	325.2744865	125.6753201	M3	-0.014285714	0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.184	116	84	0	0	14qC3	chr14-53294676-65386686	4	2	2	0.96	4.111040811	NA	1	0.787949489	sgMsh2	cell line
chr13	66956436	66956436	A	G	ENSMUST00000021990.3	1	ENSMUSG00000021518	missense	E/G	124	Ptdss1	ENSMUST00000021990.3:c.371A>G	ENSMUSP00000021990.3:p.Glu124Gly	H-2-Kb	9	5	7	LLFLNFGQV	LLFLNFEQV	NetMHC	327.93	648.72	1.978	143	0.196	449.444	713.377	1.587	648.72	327.93	701.9	412.2	1122.30268	778.2336405	724.853099	486.6872848	M3	0.885714286	1.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.203	143	111	32	0.288288288	13qB3	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	0.869313838	sgMsh2	cell line
chr13	75878849	75878849	T	G	ENSMUST00000022078.11	1	ENSMUSG00000021589	missense	K/N	468	Rhobtb3	ENSMUST00000022078.11:c.1404A>C	ENSMUSP00000022078.5:p.Lys468Asn	H-2-Kb	9	9	3	VSNETFLSF	VSKETFLSF	SMM	343.645	425.706	1.239	139	0.201	405.045	443.114	1.094	688.38	363.15	407.4	540.2	425.7062242	343.6449768	460.5215948	446.9407979	M3	0.128571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.201	139	113	30	0.265486726	13qC1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	0.86074917	sgMsh2	cell line
chr14	52036009	52036009	A	G	ENSMUST00000214071.1	5	ENSMUSG00000044286	missense	M/T	34	Olfr221	ENSMUST00000214071.1:c.101T>C	ENSMUSP00000150675.1:p.Met34Thr	H-2-Kb	9	6	6	VVFLVTYAI	VVFLVMYAI	NetMHC	404.46	257.9	0.638	76	0.211	474.826	410.59	0.865	257.9	404.46	656.7	462	397.2921646	487.6519891	423.8869047	600.1364431	M3	2.157142857	2.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.235	76	0	0	NA	14qC2	chr14-7006943-52779282	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr14	61213807	61213807	G	T	ENSMUST00000119943.7	5	ENSMUSG00000048279	missense	R/M	4434	Sacs	ENSMUST00000119943.7:c.13301G>T	ENSMUSP00000113377.1:p.Arg4434Met	H-2-Kb	9	3	9	SAGQTYSQM	SAGQTYSQR	SMM	331.979	3733.447	11.246	123	0.252	378.953	8422.531	22.226	12229.23	415.73	22557.7	1351.7	3733.447082	331.9785319	4615.832068	342.1763584	M3	-1.185714286	-0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.273	123	10	0	0	14qD1	chr14-53294676-65386686	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr13	63033045	63033045	T	C	ENSMUST00000091560.10	1	ENSMUSG00000021458	missense	S/P	274	Aopep	ENSMUST00000091560.10:c.820T>C	ENSMUSP00000089148.4:p.Ser274Pro	H-2-Kb	9	5	7	CVYTMGPPI	CVYTMGSPI	NetMHCpan	343.4	246.8	0.719	101	0.257	424.354	333.906	0.787	312.09	444.96	246.8	343.4	355.7214058	403.747643	486.6872848	541.0656958	M3	0.114285714	0.657142857	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.263	101	1	1	1	13qB3	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr13	84294754	84294754	TA	T	ENSMUST00000057495.9	1	ENSMUSG00000035762	FS	L/X	446	Tmem161b	ENSMUST00000057495.9:c.1343del	ENSMUSP00000055208.7:p.Asn448ThrfsTer15	H-2-Kb	9	18	0	SFFEDFCHF	NA	SMM	375.068	NA	NA	123	0.325	433.889	NA	NA	NA	507.12	NA	463.9	NA	375.0679891	NA	403.8778168	M3	0.1	0.442857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.33	123	29	3	0.103448276	13qC3	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	2	1	sgMsh2	cell line
chr14	55769194	55769194	T	C	ENSMUST00000170223.8	1	ENSMUSG00000022220	missense	T/A	1061	Adcy4	ENSMUST00000170223.8:c.3181A>G	ENSMUSP00000130530.1:p.Thr1061Ala	H-2-Kb	9	10	2	CAYFLNTDL	CTYFLNTDL	NetMHCpan	437.6	426.9	0.976	75	0.253	446.369	595.703	1.335	661.33	522.88	426.9	437.6	619.5979897	449.8937915	571.8077009	442.8432201	M3	0.2	0.771428571	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.26	75	0	0	NA	14qC3	chr14-53294676-65386686	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr13	77761927	77761927	G	A	ENSMUST00000163257.8	5	ENSMUSG00000064138	missense	A/T	100	Fam172a	ENSMUST00000163257.8:c.298G>A	ENSMUSP00000133140.1:p.Ala100Thr	H-2-Kb	9	4	8	WNQKRYETL	WNQKRYEAL	SMMPMBEC	335.931	312.069	0.929	59	0.271	475.504	401.646	0.845	401.4	524.32	1301	1165.9	401.8925911	426.6875784	312.0685478	335.930936	M3	-1.942857143	-1.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.291	59	26	8	0.307692308	13qC1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr13	105444648	105444648	T	C	ENSMUST00000022235.5	NA	ENSMUSG00000021721	missense	L/P	132	Htr1a	ENSMUST00000022235.5:c.395T>C	ENSMUSP00000022235.4:p.Leu132Pro	H-2-Kb	9	9	3	IAPDRYWAI	IALDRYWAI	NetMHCpan	182.5	137.1	0.751	95	0.263	258.167	153.679	0.595	324.09	556.18	137.1	182.5	170.2589693	291.8166046	118.9186581	224.5173978	M3	-0.785714286	-0.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.27	95	0	0	NA	13qD1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr15	38022377	38022377	A	G	ENSMUST00000226414.1	NA	ENSMUSG00000037487	missense	S/P	628	Ubr5	ENSMUST00000226414.1:c.1882T>C	ENSMUSP00000154293.1:p.Ser628Pro	H-2-Db	9	4	8	SSIASSAPM	SSIASSASM	NetMHC	50.68	369.5	7.291	116	0.19	92.853	414.677	4.466	369.5	50.68	341.8	56.4	459.8540333	129.3063938	512.3538453	136.3232716	M3	0.971428571	0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.212	116	183	32	0.174863388	15qB3.1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	1	0.907854846	sgMsh2	cell line
chr15	96997032	96997032	T	C	ENSMUST00000023101.9	1	ENSMUSG00000022464	missense	I/M	534	Slc38a4	ENSMUST00000023101.9:c.1602A>G	ENSMUSP00000023101.3:p.Ile534Met	H-2-Db	9	7	5	MALIMLDWI	MALIILDWI	NetMHC	61.31	1036.31	16.903	133	0.113	88.964	663.631	7.46	1036.31	61.31	287.6	73.8	715.5170714	150.5289388	611.7443966	104.128593	M3	2.014285714	2.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.135	133	0	0	NA	15qF1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	1	0.578115114	sgMsh2	cell line
chr14	118043133	118043133	A	G	ENSMUST00000022725.3	1	ENSMUSG00000022129	missense	V/A	157	Dct	ENSMUST00000022725.3:c.470T>C	ENSMUSP00000022725.2:p.Val157Ala	H-2-Db	9	10	2	YAITTQHWL	YVITTQHWL	NetMHC	62.94	1533.59	24.366	44	0.341	333.838	2644.338	7.921	1533.59	62.94	1321	80.7	3755.08697	586.9755345	3780.680698	592.3385529	M3	-0.1	-0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.365	44	0	0	NA	14qE4	chr14-65388505-123291781	3	2	1	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr15	47881537	47881537	A	G	ENSMUST00000100670.9	5	ENSMUSG00000022311	missense	L/P	1458	Csmd3	ENSMUST00000100670.9:c.4373T>C	ENSMUSP00000098235.3:p.Leu1458Pro	H-2-Kb	8	6	6	VSLQFPAF	VSLQFLAF	NetMHC	17.81	31.51	1.769	109	0.266	50.364	58.934	1.17	31.51	17.81	60.6	48.4	60.35871704	53.42444264	57.50955406	52.32870654	M3	0.757142857	0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.265	109	0	0	NA	15qB3.3	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	2	1	sgMsh2	cell line
chr15	47704155	47704155	T	A	ENSMUST00000100670.9	5	ENSMUSG00000022311	missense	D/V	2204	Csmd3	ENSMUST00000100670.9:c.6611A>T	ENSMUSP00000098235.3:p.Asp2204Val	H-2-Kb	8	4	8	TSLYFHSV	TSLYFHSD	NetMHCpan	23.6	6723.8	284.907	121	0.273	48.966	3329.941	68.005	6179.33	26.03	6723.8	23.6	480.5515695	71.90183929	409.0157201	71.90183929	M3	0.671428571	0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.269	121	0	0	NA	15qB3.3	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	2	1	sgMsh2	cell line
chr14	119139009	119139009	T	C	ENSMUST00000065904.4	1	ENSMUSG00000053465	missense	F/L	199	Hs6st3	ENSMUST00000065904.4:c.595T>C	ENSMUSP00000070394.3:p.Phe199Leu	H-2-Kb	8	4	8	ETWLFSRL	ETWLFSRF	SMMPMBEC	35.624	447.445	12.56	31	0.387	41.155	751.555	18.262	863.91	37.61	639.2	44.7	901.0315536	55.42937734	447.4453509	35.62377999	M3	0.5	0.5	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.366	31	0	0	NA	14qE4	chr14-65388505-123291781	3	2	1	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr15	81671120	81671120	G	T	ENSMUST00000174229.7	1	ENSMUSG00000022394	missense	K/N	191	L3mbtl2	ENSMUST00000174229.7:c.573G>T	ENSMUSP00000133967.1:p.Lys191Asn	H-2-Kb	8	8	4	HSYNAAPV	HSYKAAPV	NetMHC	50.75	46.65	0.919	84	0.286	106.75	121.221	1.136	46.65	50.75	188.3	236.1	128.7478543	109.3301641	113.6946424	104.169361	M3	0.085714286	0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.28	84	32	8	0.25	15qE1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	2	1	sgMsh2	cell line
chr14	123515710	123515710	C	A	ENSMUST00000000201.6	5	ENSMUSG00000000197	missense	R/I	288	Nalcn	ENSMUST00000000201.6:c.863G>T	ENSMUSP00000000201.5:p.Arg288Ile	H-2-Kb	8	6	6	VFLMYIAI	VFLMYRAI	SMM	80.675	70.265	0.871	76	0.342	117.27	70.672	0.603	62.95	152.93	94.9	239.3	70.26515361	80.67519058	71.07878574	81.60936526	M3	2.571428571	2.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.343	76	0	0	NA	14qE5	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	sgMsh2	cell line
chr15	4759828	4759828	A	G	ENSMUST00000162585.7	1	ENSMUSG00000022181	missense	T/A	252	C6	ENSMUST00000162585.7:c.754A>G	ENSMUSP00000124417.1:p.Thr252Ala	H-2-Kb	8	10	2	KAEFYKNL	KTEFYKNL	NetMHCpan	83	74.2	0.894	46	0.522	190.225	156.053	0.82	169.63	155.16	74.2	83	189.1211064	292.2402293	142.4754378	225.2890066	M3	-0.542857143	-0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.533	46	0	0	NA	15qA1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	3	1	sgMsh2	cell line
chr15	3325898	3325898	C	A	ENSMUST00000069451.10	1	ENSMUSG00000055737	missense	R/M	301	Ghr	ENSMUST00000069451.10:c.902G>T	ENSMUSP00000069457.4:p.Arg301Met	H-2-Kb	8	4	8	VIFSKQQM	VIFSKQQR	NetMHCpan	188.2	12750.8	67.751	131	0.511	363.498	6741.575	18.546	9458.39	228.41	12750.8	188.2	2790.872523	500.8872766	4024.76011	498.5859086	M3	-0.357142857	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.501	131	18	0	0	15qA1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	3	1	sgMsh2	cell line
chr15	65857540	65857540	A	C	ENSMUST00000015146.15	1	ENSMUSG00000015002	missense	S/R	670	Efr3a	ENSMUST00000015146.15:c.2008A>C	ENSMUSP00000015146.9:p.Ser670Arg	H-2-Kb	8	11	1	RGYSVERL	SGYSVERL	SMM	216.641	102.74	0.474	79	0.291	252.168	110.215	0.437	79.46	271.13	141	423.4	102.7401038	216.6406749	117.6901185	233.2061504	M3	-0.357142857	-0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.281	79	183	43	0.234972678	15qD1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	2	1	sgMsh2	cell line
chr15	60917930	60917930	A	G	ENSMUST00000096418.4	1	ENSMUSG00000022347	missense	Y/H	490	A1bg	ENSMUST00000096418.4:c.1468T>C	ENSMUSP00000094151.3:p.Tyr490His	H-2-Kb	8	7	5	YSCRHTAL	YSCRYTAL	SMM	116.343	30.043	0.258	64	0.281	198.555	28.753	0.145	20.01	278.33	51.5	481.2	30.04277187	116.3429308	27.46249558	118.7790917	M3	-0.157142857	-0.157142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.28	64	0	0	NA	15qD1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	2	1	sgMsh2	cell line
chr15	76185668	76185668	G	A	ENSMUST00000073418.12	5	ENSMUSG00000022565	missense	R/W	1153	Plec	ENSMUST00000073418.12:c.3457C>T	ENSMUSP00000073124.6:p.Arg1153Trp	H-2-Kb	8	7	5	VHRLWLPL	VHRLRLPL	SMM	145.794	747.722	5.129	51	0.137	184.366	805.542	4.369	756.53	292.75	951.2	214.3	747.7217263	145.794117	854.5549615	154.4329616	M3	0.171428571	0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe	3	0.165	51	82	18	0.219512195	15qD3	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	1	0.706585139	sgMsh2	cell line
chr15	28346829	28346829	T	C	ENSMUST00000067048.7	5	ENSMUSG00000022262	missense	M/T	2486	Dnah5	ENSMUST00000067048.7:c.7457T>C	ENSMUSP00000069751.6:p.Met2486Thr	H-2-Kb	8	4	8	RLFVFAMT	RLFVFAMM	SMMPMBEC	182.28	37.996	0.208	53	0.283	384.705	30.353	0.079	22.71	798.3	19.8	433.1	47.39581548	336.3101696	37.99618556	182.2804114	M3	2.371428571	2.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.296	53	0	0	NA	15qB1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	2	1	sgMsh2	cell line
chr15	100209633	100209633	G	A	ENSMUST00000100203.9	1	ENSMUSG00000023026	missense	E/K	1409	Dip2b	ENSMUST00000100203.9:c.4225G>A	ENSMUSP00000097777.3:p.Glu1409Lys	H-2-Kb	8	6	6	TIYDSKTL	TIYDSETL	SMM	364.536	448.477	1.23	75	0.267	441.989	542.053	1.226	1188.74	1110.38	488.8	444.7	448.476819	364.5356443	595.3056439	439.2785529	M3	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.272	75	51	17	0.333333333	15qF1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	2	1	sgMsh2	cell line
chr15	76593618	76593618	CG	C	ENSMUST00000162503.7	5	ENSMUSG00000022550	FS	R/X	177	Adck5	ENSMUST00000162503.7:c.533del	ENSMUSP00000125055.1:p.Gly178AlafsTer48	H-2-Kb	9	49	0	TVPSYTMAL	NA	NetMHC	56.16	NA	NA	98	0.204	224.767	NA	NA	NA	56.16	NA	87.2	NA	362.3347605	NA	502.6318444	M3	0.442857143	0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.216	98	43	0	0	15qD3	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	1	0.924984183	sgMsh2	cell line
chr15	7247153	7247153	A	G	ENSMUST00000096494.4	1	ENSMUSG00000042961	missense	Y/H	511	Egflam	ENSMUST00000096494.4:c.1531T>C	ENSMUSP00000094238.4:p.Tyr511His	H-2-Kb	9	4	8	ITFRTPLHL	ITFRTPLYL	NetMHCpan	51.9	65	1.252	32	0.562	232.478	263.806	1.135	144.69	97.58	65	51.9	382.9217191	367.3753391	481.1162215	439.7947088	M3	0.057142857	0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.564	32	0	0	NA	15qA1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	3	1	sgMsh2	cell line
chr15	6786507	6786507	CT	C	ENSMUST00000061656.7	1	ENSMUSG00000050310	FS	F/X	1087	Rictor	ENSMUST00000061656.7:c.3264del	ENSMUSP00000051809.6:p.Phe1088LeufsTer7	H-2-Kb	9	7	6	NSFPFLAPA	NSFPFFGSS	NetMHCpan	113	231.6	2.05	65	0.231	363.513	404.628	1.113	714.21	114.52	231.6	113	321.4474612	612.5055101	487.8092149	621.2265381	M3	1.4	1.4	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;Vardict	3	0.252	65	47	3	0.063829787	15qA1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr15	44546608	44546608	A	G	ENSMUST00000209244.1	5	ENSMUSG00000038725	missense	I/V	2504	Pkhd1l1	ENSMUST00000209244.1:c.7510A>G	ENSMUSP00000147447.1:p.Ile2504Val	H-2-Kb	9	3	9	QSYNRAITV	QSYNRAITI	NetMHC	126.51	181.23	1.433	178	0.202	211.495	223.671	1.058	181.23	126.51	213.4	211.1	233.9429705	211.8897751	287.2433612	278.131386	M3	0.071428571	0.071428571	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.211	178	15	3	0.2	15qB3.2	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	1	0.903572512	sgMsh2	cell line
chr15	3325898	3325898	C	A	ENSMUST00000069451.10	1	ENSMUSG00000055737	missense	R/M	301	Ghr	ENSMUST00000069451.10:c.902G>T	ENSMUSP00000069457.4:p.Arg301Met	H-2-Kb	9	4	8	VIFSKQQMI	VIFSKQQRI	NetMHC	128.02	112.77	0.881	131	0.511	167.824	129.667	0.773	112.77	128.02	141	229.5	118.334124	147.6080354	149.021867	188.039895	M3	-0.357142857	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.501	131	18	0	0	15qA1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	3	1	sgMsh2	cell line
chr15	38022377	38022377	A	G	ENSMUST00000226414.1	NA	ENSMUSG00000037487	missense	S/P	628	Ubr5	ENSMUST00000226414.1:c.1882T>C	ENSMUSP00000154293.1:p.Ser628Pro	H-2-Kb	9	4	8	SSIASSAPM	SSIASSASM	NetMHC	131.72	468.59	3.557	116	0.19	324.894	631.128	1.943	468.59	131.72	625.3	284.1	636.9568317	365.6874028	798.4541822	466.9280884	M3	0.971428571	0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.212	116	183	32	0.174863388	15qB3.1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	1	0.907854846	sgMsh2	cell line
chr14	123515710	123515710	C	A	ENSMUST00000000201.6	5	ENSMUSG00000000197	missense	R/I	288	Nalcn	ENSMUST00000000201.6:c.863G>T	ENSMUSP00000000201.5:p.Arg288Ile	H-2-Kb	9	5	7	WVFLMYIAI	WVFLMYRAI	SMM	126.506	178.694	1.413	76	0.342	190.437	187.572	0.985	117.77	251.38	308	1796.8	178.6940122	126.5056726	196.4490803	129.4941055	M3	2.571428571	2.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.343	76	0	0	NA	14qE5	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	sgMsh2	cell line
chr15	83852059	83852059	T	C	ENSMUST00000109470.7	1	ENSMUSG00000041708	missense	W/R	218	Mpped1	ENSMUST00000109470.7:c.652T>C	ENSMUSP00000105096.1:p.Trp218Arg	H-2-Kb	9	7	5	WFYGRGFNL	WFYGWGFNL	SMMPMBEC	271.175	367.494	1.355	108	0.259	288.061	378.347	1.313	389.2	290.29	470	406.9	353.2726369	285.8314418	367.4937861	271.1752193	M3	-0.5	-0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.257	108	0	0	NA	15qE1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr15	76185668	76185668	G	A	ENSMUST00000073418.12	5	ENSMUSG00000022565	missense	R/W	1153	Plec	ENSMUST00000073418.12:c.3457C>T	ENSMUSP00000073124.6:p.Arg1153Trp	H-2-Kb	9	6	6	TVHRLWLPL	TVHRLRLPL	NetMHCpan	140.4	473.4	3.372	51	0.137	302.662	666.334	2.202	585.79	318.08	473.4	140.4	790.8789199	332.7438214	746.8785726	287.2433612	M3	0.171428571	0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe	3	0.165	51	82	18	0.219512195	15qD3	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	1	0.706585139	sgMsh2	cell line
chr15	4759828	4759828	A	G	ENSMUST00000162585.7	1	ENSMUSG00000022181	missense	T/A	252	C6	ENSMUST00000162585.7:c.754A>G	ENSMUSP00000124417.1:p.Thr252Ala	H-2-Kb	9	9	3	LKAEFYKNL	LKTEFYKNL	NetMHCpan	346.3	741.3	2.141	46	0.522	401.095	672.763	1.677	404.98	353.33	741.3	346.3	653.2960014	448.8590645	692.2293355	521.4948213	M3	-0.542857143	-0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.533	46	0	0	NA	15qA1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	3	1	sgMsh2	cell line
chr15	3991830	3991830	T	G	ENSMUST00000046633.9	1	ENSMUSG00000041935	missense	K/T	81	AW549877	ENSMUST00000046633.9:c.242A>C	ENSMUSP00000038476.8:p.Lys81Thr	H-2-Kb	9	4	8	MTYFEENTL	MTYFEENKL	SMM	242.722	307.688	1.268	116	0.25	358.362	418.218	1.167	723.29	579.45	513.4	390.7	307.6876041	242.7224795	323.0353127	326.0243217	M3	-0.842857143	-0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	116	109	24	0.220183486	15qA1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr16	16673096	16673096	T	C	ENSMUST00000206365.2	3	ENSMUSG00000048101	missense	K/R	295	Olfr19	ENSMUST00000206365.2:c.884A>G	ENSMUSP00000145655.2:p.Lys295Arg	H-2-Db	9	6	6	YSLRNRDLM	YSLRNKDLM	NetMHC	3.3	4.46	1.352	136	0.257	5.853	8.806	1.505	4.46	3.3	5.9	4.6	11.71170164	7.105914866	14.27479894	9.496640546	M3	-0.928571429	-0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.262	136	0	0	NA	16qA3	chr16-4630421-97886207	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr15	103462798	103462798	A	C	ENSMUST00000047405.8	1	ENSMUSG00000022488	missense	N/T	239	Nckap1l	ENSMUST00000047405.8:c.716A>C	ENSMUSP00000035400.7:p.Asn239Thr	H-2-Db	9	10	2	ITPANSDTM	INPANSDTM	NetMHC	24.26	56.17	2.315	93	0.237	123.502	236.034	1.911	56.17	24.26	149.5	57.5	322.5670482	189.5047063	348.7947987	191.6769985	M3	-0.914285714	-0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.247	93	0	0	NA	15qF3	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	sgMsh2	cell line
chr17	20502730	20502730	CT	C	ENSMUST00000233982.1	NA	ENSMUSG00000043537	FS	T/X	144	Vmn1r225	ENSMUST00000233982.1:c.438del	ENSMUSP00000156633.1:p.Pro147LeufsTer2	H-2-Db	9	6	9	CLLVNTFFL	CLLVNTFFP	SMM	137.918	1635.385	11.858	160	0.244	164.524	6631.077	40.305	11145.89	161.72	13241.5	431.4	1635.384962	137.9176981	2116.264759	167.3285316	M3	1.885714286	1.885714286	TRUE	FALSE	FALSE	1	FALSE	0	Strelka2;Vardict	2	0.2437	160	0	0	NA	17qA3.2	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr16	3592590	3592590	A	G	ENSMUST00000216259.1	5	ENSMUSG00000051003	missense	S/G	65	Olfr161	ENSMUST00000216259.1:c.193A>G	ENSMUSP00000150825.1:p.Ser65Gly	H-2-Db	9	8	4	FFLGNLSFV	FFLSNLSFV	SMM	191.699	80.282	0.419	148	0.25	456.264	114.023	0.25	99.94	647.94	502	1445.2	80.28233585	191.6990674	128.1061561	264.5879126	M3	1.414285714	1.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.254	148	0	0	NA	16qA1	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	sgMsh2	cell line
chr16	34198458	34198458	CG	C	ENSMUST00000114960.8	1	ENSMUSG00000061751	FS	P/X	1311	Kalrn	ENSMUST00000114960.8:c.3933del	ENSMUSP00000110611.2:p.Gly1312AlafsTer65	H-2-Db	9	13	0	SSIRNISSS	NA	SMM	162.039	NA	NA	116	0.224	454.194	NA	NA	NA	1014.13	NA	658.6	NA	162.0391663	NA	249.7870966	M3	-0.2	-0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.235	116	12	0	0	16qB3	chr16-4630421-97886207	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr15	101643595	101643595	T	A	ENSMUST00000229963.1	NA	ENSMUSG00000095241	missense	Y/F	468	Gm5478	ENSMUST00000229963.1:c.1403A>T	ENSMUSP00000155269.1:p.Tyr468Phe	H-2-Kb	8	7	5	SSHSFASV	SSHSYASV	NetMHC	6.34	8.19	1.292	93	0.183	20.43	27.345	1.339	8.19	6.34	24.3	16.1	32.26561891	26.28693795	30.39065077	24.75939338	M3	0.457142857	0.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.187	93	0	0	NA	15qF2	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	1	0.800796491	sgMsh2	cell line
chr17	14670751	14670751	A	G	ENSMUST00000170872.2	1	ENSMUSG00000023885	missense	V/A	1039	Thbs2	ENSMUST00000170872.2:c.3116T>C	ENSMUSP00000128308.1:p.Val1039Ala	H-2-Kb	8	5	7	SSSRFYAV	SSSRFYVV	NetMHC	13.14	84.29	6.415	86	0.209	71.128	166.876	2.346	84.29	13.14	132.5	56.8	201.251905	85.45549615	244.1968177	108.5775406	M3	0.2	0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.208	86	0	0	NA	17qA2	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.890725509	sgMsh2	cell line
chr16	32298440	32298440	GA	G	ENSMUST00000171474.1	1	ENSMUSG00000014074	FS	E/X	273	Rnf168	ENSMUST00000171474.1:c.824del	ENSMUSP00000126484.1:p.Asn275IlefsTer31	H-2-Kb	8	12	2	KIYQHFLL	NA	NetMHC	15.4	NA	NA	50	0.26	20.587	NA	NA	NA	15.4	NA	17.2	NA	23.97397234	NA	30.25101842	M3	0.985714286	0.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.269	50	77	14	0.181818182	16qB3	chr16-4630421-97886207	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr17	14670751	14670751	A	G	ENSMUST00000170872.2	1	ENSMUSG00000023885	missense	V/A	1039	Thbs2	ENSMUST00000170872.2:c.3116T>C	ENSMUSP00000128308.1:p.Val1039Ala	H-2-Kb	8	6	6	SSRFYAVM	SSRFYVVM	NetMHCpan	22.1	48.2	2.181	86	0.209	35.479	153.102	4.315	166.33	22.57	48.2	22.1	139.8749679	48.38825938	172.8781076	59.94321055	M3	0.585714286	0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.208	86	0	0	NA	17qA2	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.890725509	sgMsh2	cell line
chr16	59201814	59201814	G	T	ENSMUST00000208244.2	2	ENSMUSG00000052537	missense	A/D	204	Olfr198	ENSMUST00000208244.2:c.611C>A	ENSMUSP00000146813.2:p.Ala204Asp	H-2-Kb	8	5	7	LVLIFSDL	LVLIFSAL	NetMHCpan	42.8	18.4	0.43	194	0.196	82.245	26.971	0.328	11.93	47.07	18.4	42.8	37.56124682	135.4378341	35.54184757	117.4194387	M3	2.114285714	2.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.207	194	0	0	NA	16qC1.3	chr16-4630421-97886207	4	2	2	0.96	4.111040811	NA	1	0.886443175	sgMsh2	cell line
chr16	19566134	19566134	T	C	ENSMUST00000215476.1	5	ENSMUSG00000068535	missense	M/V	250	Olfr169	ENSMUST00000215476.1:c.748A>G	ENSMUSP00000150917.1:p.Met250Val	H-2-Kb	8	9	3	VIVYYGPF	VIMYYGPF	NetMHC	58.99	29.11	0.493	347	0.216	130.566	74.698	0.572	29.11	58.99	38.8	91.8	179.3659491	231.6007706	110.5961477	169.3323751	M3	0.985714286	1.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.221	347	0	0	NA	16qA3	chr16-4630421-97886207	4	2	2	0.96	4.111040811	NA	1	0.946395853	sgMsh2	cell line
chr16	3592590	3592590	A	G	ENSMUST00000216259.1	5	ENSMUSG00000051003	missense	S/G	65	Olfr161	ENSMUST00000216259.1:c.193A>G	ENSMUSP00000150825.1:p.Ser65Gly	H-2-Kb	8	6	6	MYFFLGNL	MYFFLSNL	NetMHCpan	34	14.7	0.432	148	0.25	89.071	59.088	0.663	49.51	88.66	14.7	34	68.66572344	89.4828896	80.11982647	98.3422182	M3	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.254	148	0	0	NA	16qA1	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	sgMsh2	cell line
chr16	26710559	26710559	T	C	ENSMUST00000096129.8	1	ENSMUSG00000022514	missense	V/A	377	Il1rap	ENSMUST00000096129.8:c.1130T>C	ENSMUSP00000093843.2:p.Val377Ala	H-2-Kb	8	10	2	VAYHVYWL	VVYHVYWL	NetMHCpan	53.5	80.4	1.503	134	0.358	75.342	79.619	1.057	212.53	160.46	80.4	53.5	66.48749949	65.42443789	78.83879904	85.25895396	M3	0.442857143	0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.347	134	3	3	1	16qB2	chr16-4630421-97886207	4	2	2	0.96	4.111040811	NA	2	1	sgMsh2	cell line
chr17	22146436	22146436	A	G	ENSMUST00000080249.5	1	ENSMUSG00000063383	missense	C/R	86	Zfp947	ENSMUST00000080249.5:c.256T>C	ENSMUSP00000079137.5:p.Cys86Arg	H-2-Kb	8	7	5	KSYERHEL	KSYECHEL	NetMHCpan	80.7	110	1.363	172	0.215	257.706	143.357	0.556	190.09	201.55	110	80.7	139.2323008	313.8629122	147.4823333	342.5626424	M3	-1.857142857	-1.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.209	172	7	0	0	17qA3.3	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.895007843	sgMsh2	cell line
chr17	20502847	20502847	A	AT	ENSMUST00000233982.1	NA	ENSMUSG00000043537	FS	-/X	183-184	Vmn1r225	ENSMUST00000233982.1:c.553dup	ENSMUSP00000156633.1:p.Trp185LeufsTer5	H-2-Kb	8	8	6	VYIAFLGI	VYIAFWVF	NetMHCpan	132.8	2122.5	15.983	171	0.263	315.408	2062.886	6.54	2153.98	265.44	2122.5	132.8	2003.272365	381.7156799	1777.215122	365.3759857	M3	2.242857143	2.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.287	171	0	0	NA	17qA3.2	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr16	3592523	3592523	GA	G	ENSMUST00000216259.1	5	ENSMUSG00000051003	FS	G/X	42	Olfr161	ENSMUST00000216259.1:c.128del	ENSMUSP00000150825.1:p.Asn43ThrfsTer46	H-2-Kb	8	47	0	LSLRYWPF	NA	NetMHCpan	130.4	NA	NA	130	0.223	210.41	NA	NA	NA	465.62	NA	130.4	NA	248.7367755	NA	172.0838049	M3	-0.357142857	-0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.224	130	0	0	NA	16qA1	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	sgMsh2	cell line
chr16	58915901	58915901	GA	G	ENSMUST00000171656.2	2	ENSMUSG00000090629	FS	S/X	247	Olfr180	ENSMUST00000171656.2:c.739del	ENSMUSP00000128358.1:p.Ser247LeufsTer31	H-2-Kb	8	31	0	KTYQWLYF	NA	NetMHCpan	200.7	NA	NA	162	0.179	382.912	NA	NA	NA	489.31	NA	200.7	NA	445.3895263	NA	320.4350395	M3	-0.157142857	-0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.195	162	0	0	NA	16qC1.2	chr16-4630421-97886207	4	2	2	0.96	4.111040811	NA	1	0.835055165	sgMsh2	cell line
chr16	58915901	58915901	GA	G	ENSMUST00000171656.2	2	ENSMUSG00000090629	FS	S/X	247	Olfr180	ENSMUST00000171656.2:c.739del	ENSMUSP00000128358.1:p.Ser247LeufsTer31	H-2-Kb	8	29	0	VIKTYQWL	NA	SMM	154.433	NA	NA	162	0.179	282.366	NA	NA	NA	556.53	NA	386.6	NA	154.4329616	NA	178.1312026	M3	-0.285714286	-0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.195	162	0	0	NA	16qC1.2	chr16-4630421-97886207	4	2	2	0.96	4.111040811	NA	1	0.835055165	sgMsh2	cell line
chr16	32961669	32961669	A	G	ENSMUST00000135193.8	5	ENSMUSG00000022801	missense	Y/C	271	Lrch3	ENSMUST00000135193.8:c.812A>G	ENSMUSP00000130708.1:p.Tyr271Cys	H-2-Kb	8	5	7	KIHIFKCL	KIHIFKYL	SMMPMBEC	256.886	92.628	0.361	161	0.292	319.381	76.184	0.239	59.74	598.73	59.4	324.9	102.9769442	313.8629122	92.62751223	256.8857419	M3	1.571428571	1.571428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.302	161	64	11	0.171875	16qB3	chr16-4630421-97886207	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr16	21984223	21984223	C	A	ENSMUST00000060673.7	1	ENSMUSG00000044626	missense	S/I	32	Liph	ENSMUST00000060673.7:c.95G>T	ENSMUSP00000062310.6:p.Ser32Ile	H-2-Kb	8	7	5	LSFHIAVV	LSFHSAVV	NetMHCpan	163.4	278.9	1.707	100	0.3	421.954	297.901	0.706	664.56	793.74	278.9	163.4	309.5565516	513.7360001	286.246378	330.1718172	M3	1.928571429	1.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.288	100	0	0	NA	16qB1	chr16-4630421-97886207	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr17	20047997	20047997	T	C	ENSMUST00000168050.2	5	ENSMUSG00000090315	missense	Y/C	70	Vmn2r104	ENSMUST00000168050.2:c.209A>G	ENSMUSP00000129895.1:p.Tyr70Cys	H-2-Kb	8	5	7	STKPYVCL	STKPYVYL	SMM	396.954	130.239	0.328	97	0.216	436.567	138.016	0.316	157.25	1358.6	72.8	468.8	130.2386842	396.9538331	145.794117	404.3337559	M3	0.428571429	0.428571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.234	97	0	0	NA	17qA3.2	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr17	14670751	14670751	A	G	ENSMUST00000170872.2	1	ENSMUSG00000023885	missense	V/A	1039	Thbs2	ENSMUST00000170872.2:c.3116T>C	ENSMUSP00000128308.1:p.Val1039Ala	H-2-Kb	9	5	7	SSSRFYAVM	SSSRFYVVM	NetMHC	10.18	60.31	5.924	86	0.209	68.885	112.801	1.638	60.31	10.18	30.7	15.8	184.9737069	128.2655418	165.2913018	121.9691508	M3	0.585714286	0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.208	86	0	0	NA	17qA2	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.890725509	sgMsh2	cell line
chr16	19566134	19566134	T	C	ENSMUST00000215476.1	5	ENSMUSG00000068535	missense	M/V	250	Olfr169	ENSMUST00000215476.1:c.748A>G	ENSMUSP00000150917.1:p.Met250Val	H-2-Kb	9	8	4	VVIVYYGPF	VVIMYYGPF	NetMHC	15.9	15.15	0.953	347	0.216	20.74	22.059	1.064	15.15	15.9	24	30.7	23.8292295	20.23531643	20.28850284	21.24467052	M3	0.985714286	2.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.221	347	0	0	NA	16qA3	chr16-4630421-97886207	4	2	2	0.96	4.111040811	NA	1	0.946395853	sgMsh2	cell line
chr16	3592590	3592590	A	G	ENSMUST00000216259.1	5	ENSMUSG00000051003	missense	S/G	65	Olfr161	ENSMUST00000216259.1:c.193A>G	ENSMUSP00000150825.1:p.Ser65Gly	H-2-Kb	9	5	7	PMYFFLGNL	PMYFFLSNL	SMM	22.862	15.35	0.671	148	0.25	43.133	26.875	0.623	34.5	54.11	28.5	71.6	15.35005727	22.86177783	25.24933823	32.15511003	M3	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.254	148	0	0	NA	16qA1	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	sgMsh2	cell line
chr17	20502847	20502847	A	AT	ENSMUST00000233982.1	NA	ENSMUSG00000043537	FS	-/X	183-184	Vmn1r225	ENSMUST00000233982.1:c.553dup	ENSMUSP00000156633.1:p.Trp185LeufsTer5	H-2-Kb	9	7	7	TVYIAFLGI	TVYIAFWVF	NetMHCpan	60.4	1563.2	25.881	171	0.263	124.387	895.217	7.197	1484.16	70.08	1563.2	60.4	306.2739079	178.6940122	268.0711022	196.4490803	M3	2.242857143	2.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.287	171	0	0	NA	17qA3.2	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr17	20030036	20030036	A	G	ENSMUST00000168050.2	5	ENSMUSG00000090315	missense	F/L	658	Vmn2r104	ENSMUST00000168050.2:c.1972T>C	ENSMUSP00000129895.1:p.Phe658Leu	H-2-Kb	9	11	1	LAVAFTMAL	FAVAFTMAL	NetMHC	89.34	100.18	1.121	534	0.217	263.25	298.368	1.133	100.18	89.34	166.1	107.6	430.63567	418.8996524	526.3201534	458.4056903	M3	2.228571429	2.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe	3	0.22	534	0	0	NA	17qA3.2	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.942113519	sgMsh2	cell line
chr17	18243723	18243723	T	G	ENSMUST00000172190.3	5	ENSMUSG00000090417	missense	E/D	768	Vmn2r94	ENSMUST00000172190.3:c.2304A>C	ENSMUSP00000126386.2:p.Glu768Asp	H-2-Kb	9	8	4	VAMDVFSIL	VAMEVFSIL	NetMHCpan	40.2	29	0.721	303	0.234	143.187	119.931	0.838	91.23	122.65	29	40.2	148.6312054	163.7231154	171.4944225	179.1636906	M3	1.842857143	1.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.238	303	0	0	NA	17qA3.2	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr16	13835196	13835196	T	G	ENSMUST00000023362.14	1	ENSMUSG00000022681	missense	L/W	272	Ntan1	ENSMUST00000023362.14:c.815T>G	ENSMUSP00000023362.8:p.Leu272Trp	H-2-Kb	9	9	3	STWMFLKKF	STLMFLKKF	NetMHC	150.06	189.84	1.265	61	0.262	255.117	324.22	1.271	189.84	150.06	238	216.3	451.9704069	352.4601324	410.4403034	293.9341186	M3	0.371428571	0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.283	61	133	35	0.263157895	16qA1	chr16-4630421-97886207	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr17	22602492	22602492	A	G	ENSMUST00000097381.4	1	ENSMUSG00000094921	missense	T/A	149	Vmn2r112	ENSMUST00000097381.4:c.445A>G	ENSMUSP00000094994.3:p.Thr149Ala	H-2-Kb	9	10	2	TAVTLYTIL	TTVTLYTIL	NetMHCpan	171.1	159.6	0.933	221	0.127	247.205	307.665	1.245	316.62	263.07	159.6	171.1	382.0410236	277.4022632	298.7101638	231.3396105	M3	1.942857143	1.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.137	221	0	0	NA	17qA3.3	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.586679782	sgMsh2	cell line
chr17	19053653	19053653	C	A	ENSMUST00000170424.2	5	ENSMUSG00000096717	missense	S/Y	54	Vmn2r98	ENSMUST00000170424.2:c.161C>A	ENSMUSP00000131261.1:p.Ser54Tyr	H-2-Kb	9	7	5	HTFYYLKKM	HTFYSLKKM	NetMHCpan	162.4	2676.5	16.481	120	0.242	315.655	1812.209	5.741	2171.47	303.78	2676.5	162.4	1432.550696	345.2311699	1452.947761	327.5291816	M3	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.232	120	0	0	NA	17qA3.2	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.993501529	sgMsh2	cell line
chr16	58915901	58915901	GA	G	ENSMUST00000171656.2	2	ENSMUSG00000090629	FS	S/X	247	Olfr180	ENSMUST00000171656.2:c.739del	ENSMUSP00000128358.1:p.Ser247LeufsTer31	H-2-Kb	9	31	0	KTYQWLYFI	NA	NetMHCpan	171.2	NA	NA	162	0.179	384.332	NA	NA	NA	307.23	NA	171.2	NA	461.4344339	NA	521.4948213	M3	0.585714286	0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.195	162	0	0	NA	16qC1.2	chr16-4630421-97886207	4	2	2	0.96	4.111040811	NA	1	0.835055165	sgMsh2	cell line
chr16	3592523	3592523	GA	G	ENSMUST00000216259.1	5	ENSMUSG00000051003	FS	G/X	42	Olfr161	ENSMUST00000216259.1:c.128del	ENSMUSP00000150825.1:p.Asn43ThrfsTer46	H-2-Kb	9	39	0	WMYASPPPL	NA	NetMHCpan	187.9	NA	NA	130	0.223	209.738	NA	NA	NA	330.1	NA	187.9	NA	192.357888	NA	227.1171867	M3	-0.185714286	-0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.224	130	0	0	NA	16qA1	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	sgMsh2	cell line
chr16	34198458	34198458	CG	C	ENSMUST00000114960.8	1	ENSMUSG00000061751	FS	P/X	1311	Kalrn	ENSMUST00000114960.8:c.3933del	ENSMUSP00000110611.2:p.Gly1312AlafsTer65	H-2-Kb	9	58	0	TNFRCMSPT	NA	NetMHCpan	449.7	NA	NA	116	0.224	478.174	NA	NA	NA	503.19	NA	449.7	NA	642.8505207	NA	453.1583638	M3	-0.057142857	-0.057142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.235	116	12	0	0	16qB3	chr16-4630421-97886207	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr16	26710559	26710559	T	C	ENSMUST00000096129.8	1	ENSMUSG00000022514	missense	V/A	377	Il1rap	ENSMUST00000096129.8:c.1130T>C	ENSMUSP00000093843.2:p.Val377Ala	H-2-Kb	9	11	1	AYHVYWLEM	VYHVYWLEM	SMM	295.196	99.337	0.337	134	0.358	436.585	174.823	0.4	323.85	709.73	234.5	555.3	99.3367621	295.1956816	115.1463034	317.8703353	M3	0.142857143	0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.347	134	3	3	1	16qB2	chr16-4630421-97886207	4	2	2	0.96	4.111040811	NA	2	1	sgMsh2	cell line
chr17	56632320	56632320	T	G	ENSMUST00000112979.3	1	ENSMUSG00000040828	missense	F/V	50	Catsperd	ENSMUST00000112979.3:c.148T>G	ENSMUSP00000108603.2:p.Phe50Val	H-2-Db	9	5	7	YAFPNTVVL	YAFPNTFVL	NetMHCpan	9.1	7.6	0.835	114	0.219	33.615	30.922	0.92	12.57	10.27	7.6	9.1	49.27424743	62.03260224	49.83907806	56.96000254	M3	1.314285714	1.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.214	114	1	1	1	17qD	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.916419514	sgMsh2	cell line
chr17	38148878	38148878	T	C	ENSMUST00000215078.2	5	ENSMUSG00000063240	missense	C/R	97	Olfr133	ENSMUST00000215078.2:c.289T>C	ENSMUSP00000149451.2:p.Cys97Arg	H-2-Kb	8	6	6	ISYMRRAV	ISYMRCAV	NetMHC	16.45	13.51	0.821	281	0.249	49.956	47.314	0.947	13.51	16.45	20.2	32.5	86.64430052	79.2027024	74.42862571	67.41243274	M3	-0.457142857	-0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.248	281	0	0	NA	17qB1	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr17	37590059	37590059	A	G	ENSMUST00000216249.1	5	ENSMUSG00000062629	missense	M/T	98	Olfr114	ENSMUST00000216249.1:c.293T>C	ENSMUSP00000149735.1:p.Met98Thr	H-2-Kb	8	5	7	ISYGQCTL	ISYGQCML	SMM	46.21	40.714	0.881	520	0.217	49.885	43.907	0.88	36.99	48.97	47.1	50.8	40.71364636	46.21042896	60.63732022	68.0361923	M3	-0.057142857	0.042857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.217	520	0	0	NA	17qB1	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.929266517	sgMsh2	cell line
chr17	80433721	80433721	T	A	ENSMUST00000068714.6	2	ENSMUSG00000024241	missense	Q/L	545	Sos1	ENSMUST00000068714.6:c.1634A>T	ENSMUSP00000067786.5:p.Gln545Leu	H-2-Kb	8	8	4	ISLLYRST	ISLQYRST	NetMHC	76.46	115.51	1.511	67	0.179	118.863	128.993	1.085	115.51	76.46	315.3	141.4	142.4754378	146.8047136	96.10367602	96.32521787	M3	-0.071428571	0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.182	67	53	14	0.264150943	17qE3	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.77938482	sgMsh2	cell line
chr17	87718777	87718777	G	A	ENSMUST00000024967.13	1	ENSMUSG00000024151	missense	E/K	728	Msh2	ENSMUST00000024967.13:c.2182G>A	ENSMUSP00000024967.7:p.Glu728Lys	H-2-Kb	8	6	6	STFMAKML	STFMAEML	NetMHCpan	96.3	104.1	1.081	278	0.104	129.681	162.022	1.249	126.92	111.88	104.1	96.3	197.1242255	160.228586	199.8664966	147.4823333	M3	1.085714286	1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.11	278	67	2	0.029850746	17qE4	chr17-87672302-87723786	9.53162491	5.53162491	4	0.96	4.111040811	NA	1	0.47105676	sgMsh2	cell line
chr17	28691801	28691801	C	A	ENSMUST00000004990.13	1	ENSMUSG00000053436	missense	P/H	21	Mapk14	ENSMUST00000004990.13:c.62C>A	ENSMUSP00000004990.6:p.Pro21His	H-2-Kb	8	10	2	VHERYQNL	VPERYQNL	SMMPMBEC	69.142	86.445	1.25	38	0.289	92.674	285.683	3.083	483.92	114.92	1111.1	352.6	87.44601036	70.42713151	86.44502416	69.1416915	M3	-2.242857143	-2.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.324	38	47	8	0.170212766	17qA3.3	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr17	87718777	87718777	G	A	ENSMUST00000024967.13	1	ENSMUSG00000024151	missense	E/K	728	Msh2	ENSMUST00000024967.13:c.2182G>A	ENSMUSP00000024967.7:p.Glu728Lys	H-2-Kb	8	5	7	VSTFMAKM	VSTFMAEM	NetMHCpan	53	65.2	1.23	278	0.104	264.572	335.917	1.27	149.75	132.19	65.2	53	522.0835386	396.9538331	602.1989584	415.6616909	M3	0.428571429	0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.11	278	67	2	0.029850746	17qE4	chr17-87672302-87723786	9.53162491	5.53162491	4	0.96	4.111040811	NA	1	0.47105676	sgMsh2	cell line
chr17	73816404	73816404	A	G	ENSMUST00000024860.8	1	ENSMUSG00000024065	missense	N/S	134	Ehd3	ENSMUST00000024860.8:c.401A>G	ENSMUSP00000024860.7:p.Asn134Ser	H-2-Kb	8	11	1	SRFVCAQL	NRFVCAQL	SMMPMBEC	111.619	633.49	5.675	56	0.107	186.137	2017.113	10.837	4754.54	224.11	3092.9	572.9	941.3258822	148.1630809	633.4903447	111.6194813	M3	1.014285714	1.014285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.133	56	0	0	NA	17qE2	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.569550446	sgMsh2	cell line
chr17	40228805	40228805	A	G	ENSMUST00000026499.5	1	ENSMUSG00000025433	missense	V/A	167	Crisp3	ENSMUST00000026499.5:c.500T>C	ENSMUSP00000026499.5:p.Val167Ala	H-2-Kb	8	10	2	YACRYCPV	YVCRYCPV	SMMPMBEC	174.478	161.339	0.925	329	0.201	239.579	312.449	1.304	429.13	286.52	494.4	303	195.7672319	192.6371303	161.3392375	174.4777291	M3	0.514285714	0.514285714	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.201	329	0	0	NA	17qB2	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.86074917	sgMsh2	cell line
chr17	84692924	84692924	A	T	ENSMUST00000045714.14	1	ENSMUSG00000024254	missense	Y/F	304	Abcg8	ENSMUST00000045714.14:c.911A>T	ENSMUSP00000035246.8:p.Tyr304Phe	H-2-Kb	8	8	4	MVQFFTSI	MVQYFTSI	NetMHCpan	56	76.4	1.364	87	0.241	405.83	426.687	1.051	326.46	509.78	76.4	56	545.4312289	396.9538331	526.9143181	414.7056956	M3	1.328571429	1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.265	87	0	0	NA	17qE4	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr17	58294347	58294347	GA	G	ENSMUST00000076038.6	2	ENSMUSG00000038048	FS	E/X	830	Cntnap5c	ENSMUST00000076038.6:c.2491del	ENSMUSP00000075416.5:p.Ile831SerfsTer12	H-2-Kb	8	8	5	VFLESLAL	VFLEILGI	SMM	241.402	3449.372	14.289	157	0.287	469.793	3333.027	7.095	3279.64	517.17	1794.2	607.2	3449.371732	241.4015198	3386.413603	422.4156501	M3	1.671428571	1.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.317	157	0	0	NA	17qD	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr18	13015915	13015915	T	G	ENSMUST00000041676.2	1	ENSMUSG00000037346	missense	D/E	111	Hrh4	ENSMUST00000041676.2:c.333T>G	ENSMUSP00000041061.2:p.Asp111Glu	H-2-Kb	8	8	4	ISYERYQS	ISYDRYQS	NetMHCpan	245.3	408.1	1.664	181	0.287	406.318	624.792	1.538	1091.95	533.49	408.1	245.3	540.4306853	347.3281635	709.1530907	465.3074435	M3	-2.242857143	-1.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.288	181	0	0	NA	18qA1	chr18-5046666-88869177	3	2	1	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr17	35066160	35066160	A	G	ENSMUST00000174190.1	1	ENSMUSG00000073414	missense	V/A	4	Mpig6b	ENSMUST00000174190.1:c.11T>C	ENSMUSP00000133377.1:p.Val4Ala	H-2-Kb	8	1	4	MALALPLL	MALVLPLL	NetMHCpan	363.4	251.3	0.692	71	0.239	457.447	393.538	0.86	404.48	539.39	251.3	363.4	382.5956254	398.7860888	438.2682402	516.1072977	M3	2.457142857	2.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	71	0	0	NA	17qB1	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr17	37751964	37751964	A	G	ENSMUST00000174675.3	5	ENSMUSG00000060017	missense	I/V	37	Olfr121	ENSMUST00000174675.3:c.109A>G	ENSMUSP00000133865.3:p.Ile37Val	H-2-Kb	8	4	8	CFLLFTLV	CFLLFTLI	SMM	253.945	461.041	1.816	374	0.238	479.578	724.227	1.51	850.4	581.81	2002	2533.9	461.0414792	253.9451951	598.0534499	377.3462166	M3	2.928571429	2.928571429	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.243	374	0	0	NA	17qB1	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr17	30761096	30761096	GT	G	ENSMUST00000236140.1	NA	ENSMUSG00000033826	FS	F/X	3035	Dnah8	ENSMUST00000236140.1:c.9108del	ENSMUSP00000157469.1:p.Phe3036LeufsTer5	H-2-Kb	8	5	8	TSLDLVFL	TSLDLVFF	SMM	245.89	3997.054	16.255	118	0.203	452.067	3837.777	8.489	5159.69	706.65	3678.5	633.9	3997.053856	245.8895091	3394.220093	270.2340064	M3	2.014285714	2.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.2	118	0	0	NA	17qA3.3	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.856466836	sgMsh2	cell line
chr18	37355814	37355814	A	G	ENSMUST00000051163.2	NA	ENSMUSG00000045876	missense	T/A	182	Pcdhb8	ENSMUST00000051163.2:c.544A>G	ENSMUSP00000054371.1:p.Thr182Ala	H-2-Kb	8	5	7	LHFHVVAL	LHFHVVTL	SMMPMBEC	402.476	633.49	1.574	95	0.547	420.325	659.284	1.569	1527.68	933.94	394.2	428.8	685.0779666	411.8508816	633.4903447	402.476011	M3	1.485714286	1.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.522	95	0	0	NA	18qB3	chr18-5046666-88869177	3	2	1	0.96	4.111040811	NA	2	1	sgMsh2	cell line
chr18	13015915	13015915	T	G	ENSMUST00000041676.2	1	ENSMUSG00000037346	missense	D/E	111	Hrh4	ENSMUST00000041676.2:c.333T>G	ENSMUSP00000041061.2:p.Asp111Glu	H-2-Kb	9	8	4	ISYERYQSV	ISYDRYQSV	NetMHC	4.58	6.82	1.489	181	0.287	10.587	11.524	1.089	6.82	4.58	7.3	6.1	17.91059444	16.25960534	15.74889183	15.07474589	M3	-1.528571429	-1.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.288	181	0	0	NA	18qA1	chr18-5046666-88869177	3	2	1	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr17	80433721	80433721	T	A	ENSMUST00000068714.6	2	ENSMUSG00000024241	missense	Q/L	545	Sos1	ENSMUST00000068714.6:c.1634A>T	ENSMUSP00000067786.5:p.Gln545Leu	H-2-Kb	9	8	4	ISLLYRSTL	ISLQYRSTL	NetMHC	9.44	10.14	1.074	67	0.179	45.936	64.304	1.4	10.14	9.44	16.6	11.5	126.2147176	80.37296686	112.0082469	81.70525693	M3	0.585714286	0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.182	67	53	14	0.264150943	17qE3	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.77938482	sgMsh2	cell line
chr17	84692924	84692924	A	T	ENSMUST00000045714.14	1	ENSMUSG00000024254	missense	Y/F	304	Abcg8	ENSMUST00000045714.14:c.911A>T	ENSMUSP00000035246.8:p.Tyr304Phe	H-2-Kb	9	7	5	QMVQFFTSI	QMVQYFTSI	NetMHCpan	38.2	56.7	1.484	87	0.241	110.804	144.177	1.301	109.66	76.36	56.7	38.2	178.6940122	145.2479461	201.0249672	188.9078477	M3	1.328571429	1.328571429	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.265	87	0	0	NA	17qE4	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr17	80216772	80216772	T	C	ENSMUST00000134652.1	3	ENSMUSG00000046196	missense	Y/H	287	Ttc39d	ENSMUST00000134652.1:c.859T>C	ENSMUSP00000123158.1:p.Tyr287His	H-2-Kb	9	8	4	LFYHNYVRV	LFYYNYVRV	NetMHC	102.39	66.55	0.65	218	0.229	111.758	88.353	0.791	66.55	102.39	231.3	294.6	89.55915762	119.7043685	87.14651012	103.8125837	M3	-0.771428571	0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.233	218	0	0	NA	17qE3	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.997783864	sgMsh2	cell line
chr17	37751964	37751964	A	G	ENSMUST00000174675.3	5	ENSMUSG00000060017	missense	I/V	37	Olfr121	ENSMUST00000174675.3:c.109A>G	ENSMUSP00000133865.3:p.Ile37Val	H-2-Kb	9	11	1	VLLMFLVSL	ILLMFLVSL	NetMHC	127.87	166.59	1.303	374	0.238	185.568	235.147	1.267	166.59	127.87	243.7	206.3	294.5167504	200.0368468	226.5948317	171.0999962	M3	2.785714286	3.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.243	374	0	0	NA	17qB1	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr17	40783774	40783774	A	G	ENSMUST00000232709.1	NA	ENSMUSG00000023930	missense	Y/H	137	Crisp2	ENSMUST00000232709.1:c.409T>C	ENSMUSP00000156411.1:p.Tyr137His	H-2-Kb	9	6	6	SAVGHHTQL	SAVGHYTQL	NetMHC	129.64	22.75	0.175	148	0.236	201.5	45.866	0.228	22.75	129.64	39.1	238.6	67.15989369	235.0228021	52.63201534	167.9770694	M3	-0.428571429	-0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	148	0	0	NA	17qB2	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.967807524	sgMsh2	cell line
chr18	22920873	22920873	A	G	ENSMUST00000164186.7	5	ENSMUSG00000041923	missense	I/T	194	Nol4	ENSMUST00000164186.7:c.581T>C	ENSMUSP00000130950.1:p.Ile194Thr	H-2-Kb	9	11	1	TTMAYMKHM	ITMAYMKHM	NetMHCpan	67.1	23.3	0.347	69	0.348	276.977	150.303	0.543	53.86	145.4	23.3	67.1	318.5004131	545.8961105	246.7459312	408.5545015	M3	-0.128571429	-0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.37	69	0	0	NA	18qA2	chr18-5046666-88869177	3	2	1	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr17	58294347	58294347	GA	G	ENSMUST00000076038.6	2	ENSMUSG00000038048	FS	E/X	830	Cntnap5c	ENSMUST00000076038.6:c.2491del	ENSMUSP00000075416.5:p.Ile831SerfsTer12	H-2-Kb	9	5	8	LSGVFLESL	LSGVFLEIL	NetMHC	242.37	879.82	3.63	157	0.287	330.164	650.394	1.97	879.82	242.37	1759.5	600.1	372.4860392	325.1696473	420.9688878	335.1583163	M3	1.414285714	1.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.317	157	0	0	NA	17qD	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr17	56632320	56632320	T	G	ENSMUST00000112979.3	1	ENSMUSG00000040828	missense	F/V	50	Catsperd	ENSMUST00000112979.3:c.148T>G	ENSMUSP00000108603.2:p.Phe50Val	H-2-Kb	9	3	9	LFYAFPNTV	LFYAFPNTF	NetMHCpan	233	338.6	1.453	114	0.219	281.738	333.442	1.184	338.69	258.61	338.6	233	228.6177783	304.8667072	328.2842143	424.864065	M3	0.242857143	0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.214	114	1	1	1	17qD	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.916419514	sgMsh2	cell line
chr17	37923763	37923763	C	A	ENSMUST00000216440.1	5	ENSMUSG00000059030	missense	L/I	66	Olfr128	ENSMUST00000216440.1:c.196C>A	ENSMUSP00000151065.1:p.Leu66Ile	H-2-Kb	9	3	9	PMYYFLKHI	PMYYFLKHL	SMM	64.433	25.948	0.403	588	0.248	185.842	62.493	0.336	80.88	269.06	80.6	413.5	25.9483651	64.43324442	44.38640791	102.6242509	M3	0.2	0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.232	588	0	0	NA	17qB1	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.993501529	sgMsh2	cell line
chr17	38148878	38148878	T	C	ENSMUST00000215078.2	5	ENSMUSG00000063240	missense	C/R	97	Olfr133	ENSMUST00000215078.2:c.289T>C	ENSMUSP00000149451.2:p.Cys97Arg	H-2-Kb	9	7	5	SYMRRAVQL	SYMRCAVQL	NetMHC	319.63	753.04	2.356	281	0.249	361.144	905.233	2.507	753.04	319.63	627.1	347.1	1340.01605	482.0698829	1057.426037	375.1889162	M3	-0.114285714	-0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.248	281	0	0	NA	17qB1	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr17	37923763	37923763	C	A	ENSMUST00000216440.1	5	ENSMUSG00000059030	missense	L/I	66	Olfr128	ENSMUST00000216440.1:c.196C>A	ENSMUSP00000151065.1:p.Leu66Ile	H-2-Kb	9	5	7	YYFLKHISI	YYFLKHLSI	NetMHC	361.29	353.59	0.979	588	0.248	432.287	404.154	0.935	353.59	361.29	367.5	433.8	486.5304206	470.0131405	440.8085403	430.7745129	M3	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.232	588	0	0	NA	17qB1	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.993501529	sgMsh2	cell line
chr17	37923763	37923763	C	A	ENSMUST00000216440.1	5	ENSMUSG00000059030	missense	L/I	66	Olfr128	ENSMUST00000216440.1:c.196C>A	ENSMUSP00000151065.1:p.Leu66Ile	H-2-Kb	9	11	1	ISILDLSSL	LSILDLSSL	NetMHCpan	253	1041.9	4.118	588	0.248	351.412	889.147	2.53	1332.58	393.55	1041.9	253	736.3935909	376.7992242	637.1621954	326.0243217	M3	1.542857143	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.232	588	0	0	NA	17qB1	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.993501529	sgMsh2	cell line
chr17	28691801	28691801	C	A	ENSMUST00000004990.13	1	ENSMUSG00000053436	missense	P/H	21	Mapk14	ENSMUST00000004990.13:c.62C>A	ENSMUSP00000004990.6:p.Pro21His	H-2-Kb	9	9	3	EVHERYQNL	EVPERYQNL	SMMPMBEC	314.232	458.406	1.459	38	0.289	372.707	460.452	1.235	397.99	404.92	1133.7	860.4	462.4981501	340.4944207	458.4056903	314.2317036	M3	-2.242857143	-2.185714286	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.324	38	47	8	0.170212766	17qA3.3	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr17	32377792	32377792	G	T	ENSMUST00000236409.1	NA	ENSMUSG00000024050	missense	L/I	323	Wiz	ENSMUST00000236409.1:c.967C>A	ENSMUSP00000158082.1:p.Leu323Ile	H-2-Kb	9	3	9	IYFKHKEHI	IYFKHKEHL	SMMPMBEC	335.158	144.961	0.433	66	0.121	468.818	161.055	0.344	213.66	577.21	153.8	519.7	168.310031	417.9362099	144.9606074	335.1583163	M3	-1.485714286	-1.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.125	66	14	2	0.142857143	17qB1	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.535291772	sgMsh2	cell line
chr17	87679899	87679899	G	A	ENSMUST00000024967.13	1	ENSMUSG00000024151	missense	D/N	156	Msh2	ENSMUST00000024967.13:c.466G>A	ENSMUSP00000024967.7:p.Asp156Asn	H-2-Kb	9	10	2	VNGQRHVGV	VDGQRHVGV	SMMPMBEC	285.924	1183.723	4.14	496	0.091	489.72	7481.039	15.276	13020.7	594.75	16443.9	1559.9	1941.377536	384.6892055	1183.722765	285.9235978	M3	-0.514285714	-0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.099	496	99	3	0.03030303	17qE4	chr17-87672302-87723786	9.53162491	5.53162491	4	0.96	4.111040811	NA	1	0.423951084	sgMsh2	cell line
chr17	38148878	38148878	T	C	ENSMUST00000215078.2	5	ENSMUSG00000063240	missense	C/R	97	Olfr133	ENSMUST00000215078.2:c.289T>C	ENSMUSP00000149451.2:p.Cys97Arg	H-2-Kb	9	6	6	ISYMRRAVQ	ISYMRCAVQ	SMMPMBEC	104.292	84.967	0.815	281	0.249	431.473	302.462	0.701	455.95	695.41	737	1490.1	148.9738357	167.5367167	84.96694433	104.2917608	M3	-0.842857143	-0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.248	281	0	0	NA	17qB1	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr18	37680939	37680939	G	T	ENSMUST00000192931.1	1	ENSMUSG00000103037	missense	S/I	161	Pcdhgb1	ENSMUST00000192931.1:c.482G>T	ENSMUSP00000141348.1:p.Ser161Ile	H-2-Db	9	3	9	NSLKMYTVI	NSLKMYTVS	NetMHC	158.89	19903.22	125.264	158	0.62	356.594	9153.28	25.669	19903.22	158.89	14990.9	524.3	2996.539453	391.3992598	3315.660076	321.7881152	M3	1.214285714	1.214285714	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.629	158	5	5	1	18qB3	chr18-5046666-88869177	3	2	1	0.96	4.111040811	NA	2	1	sgMsh2	cell line
chr18	37485357	37485357	A	G	ENSMUST00000053856.5	NA	ENSMUSG00000046387	missense	I/V	67	Pcdhb17	ENSMUST00000053856.5:c.199A>G	ENSMUSP00000055072.4:p.Ile67Val	H-2-Db	9	11	1	VSQENKEHL	ISQENKEHL	SMMPMBEC	398.63	514.719	1.291	54	0.352	431.345	566.809	1.314	1558.56	1221.5	373.7	408.1	618.8993121	454.5901278	514.7187632	398.6300187	M3	-2.471428571	-2.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.393	54	1	0	0	18qB3	chr18-5046666-88869177	3	2	1	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr18	37421758	37421758	A	G	ENSMUST00000053073.5	NA	ENSMUSG00000051486	missense	N/S	47	Pcdhb11	ENSMUST00000053073.5:c.140A>G	ENSMUSP00000056148.4:p.Asn47Ser	H-2-Kb	8	5	7	SGYLVASV	SGYLVANV	NetMHC	21.45	8.74	0.407	246	0.341	72.422	32.915	0.454	8.74	21.45	35.3	69.9	30.53092764	74.94454029	37.56124682	85.8499408	M3	1.642857143	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.341	246	0	0	NA	18qB3	chr18-5046666-88869177	3	2	1	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr18	76302457	76302457	G	T	ENSMUST00000168423.8	1	ENSMUSG00000024563	missense	A/S	404	Smad2	ENSMUST00000168423.8:c.1210G>T	ENSMUSP00000130115.1:p.Ala404Ser	H-2-Kb	8	11	1	SVYQLTRM	AVYQLTRM	NetMHC	22.46	53.02	2.361	121	0.347	59.095	101.969	1.726	53.02	22.46	48.4	28.5	168.1666993	89.68916897	150.9176382	90.10315536	M3	-0.014285714	-0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.364	121	127	37	0.291338583	18qE3	chr18-5046666-88869177	3	2	1	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr18	37357271	37357271	G	T	ENSMUST00000051163.2	NA	ENSMUSG00000045876	missense	Q/H	667	Pcdhb8	ENSMUST00000051163.2:c.2001G>T	ENSMUSP00000054371.1:p.Gln667His	H-2-Kb	8	9	3	FSHPYLPL	FSQPYLPL	NetMHCpan	21	50.5	2.405	221	0.303	35.781	51.174	1.43	40.55	26.3	50.5	21	51.84895408	45.26265239	74.60020141	50.90260401	M3	-0.128571429	-0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.284	221	0	0	NA	18qB3	chr18-5046666-88869177	3	2	1	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr19	13705156	13705156	A	G	ENSMUST00000216366.1	5	ENSMUSG00000051156	missense	T/A	110	Olfr1491	ENSMUST00000216366.1:c.328A>G	ENSMUSP00000149071.1:p.Thr110Ala	H-2-Kb	8	5	7	QMFFFLAL	QMFFFLTL	NetMHCpan	14.6	11.8	0.808	321	0.193	24.739	38.93	1.574	42.4	28.16	11.8	14.6	35.46010359	21.31768301	51.13755976	32.48927349	M3	2.814285714	2.814285714	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	321	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.856466836	sgMsh2	cell line
chr19	4290661	4290661	T	C	ENSMUST00000088737.10	1	ENSMUSG00000024858	missense	M/V	257	Grk2	ENSMUST00000088737.10:c.769A>G	ENSMUSP00000086114.4:p.Met257Val	H-2-Kb	8	11	1	VSYAFHTP	MSYAFHTP	SMM	26.348	56.2	2.133	156	0.173	43.101	101.595	2.357	223.64	50.66	127.9	54.8	56.20047679	26.3475356	75.29046857	35.54184757	M3	-0.428571429	0.4	FALSE	FALSE	TRUE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.169	156	110	18	0.163636364	19qA	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	sgMsh2	cell line
chr19	42767181	42767181	GC	G	ENSMUST00000160455.7	1	ENSMUSG00000025188	FS	G/X	202	Hps1	ENSMUST00000160455.7:c.605del	ENSMUSP00000125662.1:p.Gly202AlafsTer168	H-2-Kb	8	141	0	VAPRPAML	NA	NetMHC	73.94	NA	NA	96	0.146	237.16	NA	NA	NA	73.94	NA	323	NA	200.3272365	NA	273.9933359	M3	0.228571429	0.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.153	96	26	0	0	19qC3	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.655197129	sgMsh2	cell line
chr19	5026399	5026399	T	C	ENSMUST00000236152.1	NA	ENSMUSG00000024891	missense	I/T	105	Slc29a2	ENSMUST00000236152.1:c.314T>C	ENSMUSP00000157780.1:p.Ile105Thr	H-2-Kb	8	10	2	ATLLLFAL	AILLLFAL	NetMHC	111.55	117.4	1.052	104	0.221	156.223	164.211	1.051	117.4	111.55	417.7	157.3	155.1457917	155.1457917	173.2766328	166.241711	M3	2.728571429	2.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.214	104	8	0	0	19qA	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	sgMsh2	cell line
chr19	13861984	13861984	A	G	ENSMUST00000074221.1	NA	ENSMUSG00000056858	missense	S/G	64	Olfr1502	ENSMUST00000074221.1:c.190A>G	ENSMUSP00000073843.1:p.Ser64Gly	H-2-Kb	8	6	6	MYFFLGHL	MYFFLSHL	NetMHCpan	44.5	18.4	0.413	431	0.13	150.3	102.23	0.68	79.22	142.57	18.4	44.5	125.2391179	163.2074578	128.7478543	158.0301673	M3	1.185714286	1.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.137	431	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.586679782	sgMsh2	cell line
chr18	61081937	61081937	T	C	ENSMUST00000025522.10	1	ENSMUSG00000024620	missense	Y/H	1009	Pdgfrb	ENSMUST00000025522.10:c.3025T>C	ENSMUSP00000025522.4:p.Tyr1009His	H-2-Kb	8	7	5	SSVLHTAV	SSVLYTAV	NetMHC	157.61	12.1	0.077	73	0.37	248.021	44.005	0.177	12.1	157.61	29.7	355.2	58.30959165	225.8083514	62.47985313	270.2340064	M3	1.328571429	1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.365	73	0	0	NA	18qE1	chr18-5046666-88869177	3	2	1	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr19	38400469	38400469	T	A	ENSMUST00000054098.3	1	ENSMUSG00000044026	missense	L/M	75	Slc35g1	ENSMUST00000054098.3:c.223T>A	ENSMUSP00000061282.2:p.Leu75Met	H-2-Kb	8	9	3	LGMFYTVL	LGLFYTVL	NetMHCpan	25.8	40.3	1.562	147	0.238	215.12	141.085	0.656	251.45	252.44	40.3	25.8	145.794117	250.4609364	136.3766443	179.7794304	M3	1.471428571	1.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.218	147	38	8	0.210526316	19qC3	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.933548851	sgMsh2	cell line
chr19	31920923	31920923	A	G	ENSMUST00000075838.7	1	ENSMUSG00000052595	missense	R/G	236	A1cf	ENSMUST00000075838.7:c.706A>G	ENSMUSP00000075235.5:p.Arg236Gly	H-2-Kb	8	6	6	KILYVGNL	KILYVRNL	NetMHCpan	196.2	215.1	1.096	302	0.149	256.171	227.973	0.89	207.1	254.27	215.1	196.2	240.8463117	258.0714726	299.0473787	299.0473787	M3	1.585714286	1.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.157	302	0	0	NA	19qC1	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.672326466	sgMsh2	cell line
chr19	16383254	16383254	G	A	ENSMUST00000025541.5	1	ENSMUSG00000024639	missense	V/M	314	Gnaq	ENSMUST00000025541.5:c.940G>A	ENSMUSP00000025541.5:p.Val314Met	H-2-Kb	8	6	6	ILKMFMDL	ILKMFVDL	NetMHCpan	249.7	319.7	1.28	185	0.178	388.374	474.546	1.222	1460.9	633.96	319.7	249.7	595.3056439	459.9811133	353.7854762	316.7670499	M3	0.971428571	1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.184	185	248	46	0.185483871	19qA	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.787949489	sgMsh2	cell line
chr19	13313662	13313662	GA	G	ENSMUST00000207340.2	5	ENSMUSG00000062199	FS	S/X	208	Olfr1465	ENSMUST00000207340.2:c.622del	ENSMUSP00000146645.2:p.Ser208LeufsTer3	H-2-Kb	8	4	8	GSFSIFFL	GSFSIFFS	NetMHCpan	209.3	4286.2	20.479	126	0.127	319.972	4832.838	15.104	16504.16	1121.29	4286.2	209.3	5379.476318	406.2000757	4214.44121	233.7437461	M3	2.157142857	2.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.127	126	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.543856441	sgMsh2	cell line
chr18	37357271	37357271	G	T	ENSMUST00000051163.2	NA	ENSMUSG00000045876	missense	Q/H	667	Pcdhb8	ENSMUST00000051163.2:c.2001G>T	ENSMUSP00000054371.1:p.Gln667His	H-2-Kb	8	7	5	DGFSHPYL	DGFSQPYL	SMM	241.958	846.72	3.499	221	0.303	491.263	2308.602	4.699	7959.71	1456.94	3296.7	675.1	846.7203545	241.9580078	1320.504848	307.4255792	M3	-0.1	-0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.284	221	0	0	NA	18qB3	chr18-5046666-88869177	3	2	1	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr19	4290661	4290661	T	C	ENSMUST00000088737.10	1	ENSMUSG00000024858	missense	M/V	257	Grk2	ENSMUST00000088737.10:c.769A>G	ENSMUSP00000086114.4:p.Met257Val	H-2-Kb	9	11	1	VSYAFHTPD	MSYAFHTPD	SMMPMBEC	46.158	119.468	2.588	156	0.173	51.279	157.215	3.066	193.34	55.34	264.8	139.7	121.0904798	47.21826226	119.4675617	46.15832068	M3	-0.814285714	0.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.169	156	110	18	0.163636364	19qA	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	sgMsh2	cell line
chr19	13861984	13861984	A	G	ENSMUST00000074221.1	NA	ENSMUSG00000056858	missense	S/G	64	Olfr1502	ENSMUST00000074221.1:c.190A>G	ENSMUSP00000073843.1:p.Ser64Gly	H-2-Kb	9	5	7	PMYFFLGHL	PMYFFLSHL	SMM	20.47	13.744	0.671	431	0.13	50.42	27.523	0.546	44.85	72.51	32.8	81.5	13.74390042	20.46963035	22.24590099	28.33022345	M3	1.185714286	1.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.137	431	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.586679782	sgMsh2	cell line
chr19	13705156	13705156	A	G	ENSMUST00000216366.1	5	ENSMUSG00000051156	missense	T/A	110	Olfr1491	ENSMUST00000216366.1:c.328A>G	ENSMUSP00000149071.1:p.Thr110Ala	H-2-Kb	9	4	8	TQMFFFLAL	TQMFFFLTL	NetMHCpan	21.4	17.7	0.827	321	0.193	96.695	109.446	1.132	88.8	72.54	17.7	21.4	134.9304597	127.0895963	130.0918231	120.8509309	M3	2.814285714	2.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	321	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.856466836	sgMsh2	cell line
chr19	31920923	31920923	A	G	ENSMUST00000075838.7	1	ENSMUSG00000052595	missense	R/G	236	A1cf	ENSMUST00000075838.7:c.706A>G	ENSMUSP00000075235.5:p.Arg236Gly	H-2-Kb	9	5	7	VKILYVGNL	VKILYVRNL	NetMHC	101.13	84.44	0.835	302	0.149	234.876	305.351	1.3	84.44	101.13	120.8	136.9	489.9028884	391.8411118	501.4758232	332.8511027	M3	1.585714286	1.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.157	302	0	0	NA	19qC1	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.672326466	sgMsh2	cell line
chr19	6011343	6011343	G	T	ENSMUST00000025891.9	1	ENSMUSG00000024942	missense	Q/K	182	Capn1	ENSMUST00000025891.9:c.544C>A	ENSMUSP00000025891.8:p.Gln182Lys	H-2-Kb	9	11	1	KGNEFWSAL	QGNEFWSAL	NetMHC	118.09	132.59	1.123	63	0.19	359.595	400.861	1.115	132.59	118.09	393.3	165.7	408.4228203	553.4902819	523.901932	571.8077009	M3	-0.042857143	-0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.183	63	128	15	0.1171875	19qA	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	sgMsh2	cell line
chr19	13454083	13454083	A	G	ENSMUST00000096201.3	5	ENSMUSG00000095189	missense	C/R	145	Olfr1472	ENSMUST00000096201.3:c.433T>C	ENSMUSP00000093915.3:p.Cys145Arg	H-2-Kb	9	9	3	VTRCYMCGI	VTCCYMCGI	NetMHC	188.33	441.89	2.346	376	0.184	299.238	609.711	2.038	441.89	188.33	758.9	198.3	783.6280984	422.7756832	460.5215948	400.1750427	M3	0.742857143	0.742857143	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.194	376	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.830772831	sgMsh2	cell line
chr19	34495079	34495079	T	A	ENSMUST00000049572.14	1	ENSMUSG00000024781	missense	N/I	314	Lipa	ENSMUST00000049572.14:c.941A>T	ENSMUSP00000053270.8:p.Asn314Ile	H-2-Kb	9	11	1	IYFHYNQSF	NYFHYNQSF	SMMPMBEC	178.752	1092.069	6.109	65	0.215	214.115	1375.179	6.423	1567	205.33	1496.9	262.3	1253.458616	222.8999649	1092.068801	178.7516256	M3	-0.957142857	-0.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	65	242	44	0.181818182	19qC1	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	2	1	sgMsh2	cell line
chr18	37680939	37680939	G	T	ENSMUST00000192931.1	1	ENSMUSG00000103037	missense	S/I	161	Pcdhgb1	ENSMUST00000192931.1:c.482G>T	ENSMUSP00000141348.1:p.Ser161Ile	H-2-Kb	9	10	2	VIPNPHFSL	VSPNPHFSL	NetMHC	211.65	119.37	0.564	158	0.62	410.119	267.215	0.652	119.37	211.65	107.8	235.3	415.0591573	584.9382211	522.696991	774.9077422	M3	-0.585714286	0.228571429	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.629	158	5	5	1	18qB3	chr18-5046666-88869177	3	2	1	0.96	4.111040811	NA	2	1	sgMsh2	cell line
chr19	16383254	16383254	G	A	ENSMUST00000025541.5	1	ENSMUSG00000024639	missense	V/M	314	Gnaq	ENSMUST00000025541.5:c.940G>A	ENSMUSP00000025541.5:p.Val314Met	H-2-Kb	9	5	7	FILKMFMDL	FILKMFVDL	NetMHC	268.8	623.27	2.319	185	0.178	358.268	502.216	1.402	623.27	268.8	645.4	411.6	381.1623536	362.3347605	317.8703353	354.201177	M3	0.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.184	185	248	46	0.185483871	19qA	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.787949489	sgMsh2	cell line
chr19	5655735	5655735	A	G	ENSMUST00000071857.12	1	ENSMUSG00000056917	missense	F/L	402	Sipa1	ENSMUST00000071857.12:c.1204T>C	ENSMUSP00000073618.5:p.Phe402Leu	H-2-Kb	9	9	3	IMLHVSTML	IMFHVSTML	NetMHC	302.17	97.65	0.323	245	0.131	319.986	108.953	0.34	97.65	302.17	49.9	302.6	120.2568988	337.3727491	131.2955479	364.1245828	M3	1.285714286	1.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.136	245	47	7	0.14893617	19qA	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	sgMsh2	cell line
chr19	13234706	13234706	T	G	ENSMUST00000207246.3	2	ENSMUSG00000096365	missense	L/R	152	Olfr1463	ENSMUST00000207246.3:c.455T>G	ENSMUSP00000146566.1:p.Leu152Arg	H-2-Kb	9	5	7	IMGCYVRGF	IMGCYVLGF	NetMHC	361.83	442.74	1.224	258	0.116	432.694	379.524	0.877	442.74	361.83	1080.7	895.6	316.3078717	431.6283877	292.583614	433.7604991	M3	0.414285714	0.985714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.124	258	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.531009438	sgMsh2	cell line
chr19	34495079	34495079	T	A	ENSMUST00000049572.14	1	ENSMUSG00000024781	missense	N/I	314	Lipa	ENSMUST00000049572.14:c.941A>T	ENSMUSP00000053270.8:p.Asn314Ile	H-2-Kb	9	10	2	KIYFHYNQS	KNYFHYNQS	SMM	64.88	48.99	0.755	65	0.215	249.819	160.276	0.642	266.32	412.09	254.9	592.1	48.99028884	64.87987433	65.65230826	87.54876014	M3	-1.542857143	-0.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	65	242	44	0.181818182	19qC1	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	2	1	sgMsh2	cell line
chr19	34620037	34620037	T	C	ENSMUST00000087357.4	1	ENSMUSG00000067297	missense	I/V	60	Ifit1bl2	ENSMUST00000087357.4:c.178A>G	ENSMUSP00000093816.2:p.Ile60Val	H-2-Kb	9	9	3	YSVGMHNLL	YSIGMHNLL	SMM	380.286	260.082	0.684	290	0.138	455.117	282.173	0.62	226.52	468.41	459.6	891.9	260.0818226	380.2857045	304.2636004	441.8247089	M3	0.942857143	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.145	290	0	0	NA	19qC1	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.620938456	sgMsh2	cell line
chr18	80971684	80971684	CT	C	ENSMUST00000238808.1	NA	ENSMUSG00000024565	FS	S/X	1010	Sall3	ENSMUST00000238808.1:c.3028del	ENSMUSP00000158909.1:p.Ser1010ValfsTer31	H-2-Kb	9	18	0	AAIPRRGRL	NA	SMMPMBEC	325.274	NA	NA	25	0.24	475.802	NA	NA	NA	540.35	NA	758	NA	411.2538721	NA	325.2744865	M3	-1.028571429	-0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.24	25	0	0	NA	18qE3	chr18-5046666-88869177	3	2	1	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr19	13705156	13705156	A	G	ENSMUST00000216366.1	5	ENSMUSG00000051156	missense	T/A	110	Olfr1491	ENSMUST00000216366.1:c.328A>G	ENSMUSP00000149071.1:p.Thr110Ala	H-2-Kb	9	5	7	QMFFFLALG	QMFFFLTLG	SMM	107.922	144.248	1.337	321	0.193	440.66	649.506	1.474	1099.37	734.68	1443.9	1219.9	144.2480663	107.9220037	199.6411211	146.6391721	M3	2.485714286	2.814285714	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	321	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.856466836	sgMsh2	cell line
chr19	34495079	34495079	T	A	ENSMUST00000049572.14	1	ENSMUSG00000024781	missense	N/I	314	Lipa	ENSMUST00000049572.14:c.941A>T	ENSMUSP00000053270.8:p.Asn314Ile	H-2-Kb	10	10	2	KIYFHYNQSF	KNYFHYNQSF	NetMHCpan	234.5	117.4	0.501	65	0.215	484.311	421.142	0.87	191.66	238.61	117.4	234.5	650.6238811	730.0120014	674.3106206	763.5895917	M3	-0.957142857	-0.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	65	242	44	0.181818182	19qC1	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	2	1	sgMsh2	cell line
chr2	37414545	37414545	A	G	ENSMUST00000100143.9	5	ENSMUSG00000075376	missense	F/L	68	Rc3h2	ENSMUST00000100143.9:c.202T>C	ENSMUSP00000097721.3:p.Phe68Leu	H-2-Db	9	6	6	VLPVNLALL	VLPVNFALL	NetMHC	230.93	262.08	1.135	69	0.29	339.568	366.605	1.08	262.08	230.93	678	978.4	358.6080216	326.3021986	374.6019209	352.8336521	M3	1.757142857	1.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.322	69	59	15	0.254237288	2qB	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr2	32096059	32096059	A	G	ENSMUST00000057423.5	1	ENSMUSG00000051373	missense	N/S	83	Plpp7	ENSMUST00000057423.5:c.248A>G	ENSMUSP00000054337.5:p.Asn83Ser	H-2-Kb	8	6	6	KGIAFSSL	KGIAFNSL	NetMHC	17.64	43.84	2.485	29	0.276	39.051	71.041	1.819	43.84	17.64	52.6	22.8	89.4828896	55.30189331	96.10367602	55.68522772	M3	1.557142857	1.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.298	29	0	0	NA	2qB	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr2	25493787	25493787	T	C	ENSMUST00000028312.12	1	ENSMUSG00000026943	missense	M/V	24	Lcn12	ENSMUST00000028312.12:c.70A>G	ENSMUSP00000028312.6:p.Met24Val	H-2-Kb	8	11	1	VSQGFPQM	MSQGFPQM	NetMHC	67.96	316.47	4.657	64	0.25	107.588	290.453	2.7	316.47	67.96	277	90.8	265.3016799	124.3769779	303.9065077	143.4630303	M3	-0.728571429	-0.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.264	64	0	0	NA	2qA3	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr19	60543015	60543015	A	G	ENSMUST00000081790.14	1	ENSMUSG00000033417	missense	L/P	272	Cacul1	ENSMUST00000081790.14:c.815T>C	ENSMUSP00000080480.7:p.Leu272Pro	H-2-Kb	8	7	5	HIYSPMPL	HIYSLMPL	NetMHC	102.16	23.14	0.227	176	0.131	175.742	65.577	0.373	23.14	102.16	67.5	269.1	66.02980276	166.241711	65.12383991	185.2422298	M3	0.7	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.128	176	373	46	0.123324397	19qD3	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.548138775	sgMsh2	cell line
chr2	37414545	37414545	A	G	ENSMUST00000100143.9	5	ENSMUSG00000075376	missense	F/L	68	Rc3h2	ENSMUST00000100143.9:c.202T>C	ENSMUSP00000097721.3:p.Phe68Leu	H-2-Kb	8	9	3	VNLALLQL	VNFALLQL	NetMHCpan	83.1	13	0.156	69	0.29	124.295	28.013	0.225	27.86	130.9	13	83.1	28.16696149	117.6901185	33.47649647	144.7904774	M3	1.428571429	1.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.322	69	59	15	0.254237288	2qB	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr2	37202003	37202003	A	AT	ENSMUST00000218602.1	5	ENSMUSG00000059429	FS	Y/YX	254	Olfr365	ENSMUST00000218602.1:c.762dup	ENSMUSP00000151617.1:p.Gly255TrpfsTer9	H-2-Kb	8	9	4	LFYWEYHL	NA	SMMPMBEC	158.03	NA	NA	261	0.245	180.961	NA	NA	NA	188.31	NA	178.8	NA	183.1217795	NA	158.0301673	M3	-0.514285714	-0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.257	261	0	0	NA	2qB	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr2	37085433	37085433	A	C	ENSMUST00000214969.1	5	ENSMUSG00000075378	missense	M/R	105	Olfr361	ENSMUST00000214969.1:c.314T>G	ENSMUSP00000149234.1:p.Met105Arg	H-2-Kb	8	6	6	QLFSFRTV	QLFSFMTV	NetMHCpan	96.8	97.9	1.011	218	0.266	221.142	175.096	0.792	158.88	206.92	97.9	96.8	191.3110256	235.3639803	246.456343	278.4453695	M3	1.085714286	1.085714286	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.27	218	0	0	NA	2qB	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr2	32578965	32578965	GA	G	ENSMUST00000055304.13	1	ENSMUSG00000046854	FS	K/X	199	Pip5kl1	ENSMUST00000055304.13:c.599del	ENSMUSP00000051282.7:p.Lys200ArgfsTer28	H-2-Kb	8	22	0	STLPAAFL	NA	SMM	136.063	NA	NA	164	0.262	225.072	NA	NA	NA	247.03	NA	312.7	NA	136.0629867	NA	203.114066	M3	1.671428571	1.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.254	164	0	0	NA	2qB	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr2	36996936	36996936	A	AT	ENSMUST00000213218.1	5	ENSMUSG00000055838	FS	N/NX	42	Olfr357	ENSMUST00000213218.1:c.132dup	ENSMUSP00000149727.1:p.Ile45TyrfsTer21	H-2-Kb	8	22	0	FSSPYSNV	NA	SMM	252.197	NA	NA	150	0.067	299.216	NA	NA	NA	255.87	NA	356.4	NA	252.1970487	NA	342.5626424	M3	-0.657142857	-0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0667	150	0	0	NA	2qB	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	0.28563169	sgMsh2	cell line
chr2	26935351	26935351	A	G	ENSMUST00000055406.8	1	ENSMUSG00000049897	missense	N/S	10	Stkld1	ENSMUST00000055406.8:c.29A>G	ENSMUSP00000062967.8:p.Asn10Ser	H-2-Kb	8	9	2	VSLVVEEL	VNLVVEEL	NetMHC	298.06	827.1	2.775	99	0.323	351.98	706.185	2.006	827.1	298.06	634.8	446.5	611.9839043	330.9329418	777.5709016	373.0267702	M3	1.171428571	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.333	99	0	0	NA	2qA3	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	2	1	sgMsh2	cell line
chr2	31912023	31912023	A	T	ENSMUST00000028187.6	1	ENSMUSG00000026840	missense	H/L	481	Lamc3	ENSMUST00000028187.6:c.1442A>T	ENSMUSP00000028187.6:p.His481Leu	H-2-Kb	8	4	8	GTFNLQPL	GTFNLQPH	SMMPMBEC	183.544	7938.528	43.251	59	0.254	232.877	24312.774	104.402	31024.73	345.98	21664.3	241.5	26961.24854	224.2538976	7938.528349	183.5439188	M3	0.157142857	0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.283	59	0	0	NA	2qB	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr2	26983866	26983866	T	A	ENSMUST00000102891.3	1	ENSMUSG00000014852	missense	C/S	376	Adamts13	ENSMUST00000102891.3:c.1126T>A	ENSMUSP00000099955.3:p.Cys376Ser	H-2-Kb	8	10	2	RSRSLAEL	RCRSLAEL	SMM	299.737	3554.185	11.858	64	0.25	354.78	5801.142	16.351	11155.42	377.1	8048.1	1335.6	3554.184757	299.7367541	2810.217928	332.4604589	M3	-0.028571429	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.255	64	0	0	NA	2qA3	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr2	83007483	83007483	A	G	ENSMUST00000143764.8	5	ENSMUSG00000075249	missense	I/V	6931	Fsip2	ENSMUST00000143764.8:c.20791A>G	ENSMUSP00000120314.2:p.Ile6931Val	H-2-Kb	8	4	8	NSLEFVTV	NSLEFVTI	NetMHCpan	303.2	273.9	0.903	179	0.123	339.714	575.96	1.695	948.48	547.87	273.9	303.2	591.2075887	325.64169	560.7121928	353.7854762	M3	1.428571429	1.428571429	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.123	179	0	0	NA	2qD	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	1	0.526727104	sgMsh2	cell line
chr2	32096059	32096059	A	G	ENSMUST00000057423.5	1	ENSMUSG00000051373	missense	N/S	83	Plpp7	ENSMUST00000057423.5:c.248A>G	ENSMUSP00000054337.5:p.Asn83Ser	H-2-Kb	9	6	6	KGIAFSSLL	KGIAFNSLL	NetMHC	49.45	147.45	2.982	29	0.276	240.453	466.442	1.94	147.45	49.45	132	55.2	785.4345477	425.7062242	802.1396792	611.2938126	M3	2.157142857	2.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.298	29	0	0	NA	2qB	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr2	36996936	36996936	A	AT	ENSMUST00000213218.1	5	ENSMUSG00000055838	FS	N/NX	42	Olfr357	ENSMUST00000213218.1:c.132dup	ENSMUSP00000149727.1:p.Ile45TyrfsTer21	H-2-Kb	9	12	3	FFYRHTYHL	NA	NetMHCpan	72.3	NA	NA	150	0.067	94.673	NA	NA	NA	75.03	NA	72.3	NA	114.3167845	NA	156.0450512	M3	-1.485714286	-0.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0667	150	0	0	NA	2qB	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	0.28563169	sgMsh2	cell line
chr2	37202003	37202003	A	AT	ENSMUST00000218602.1	5	ENSMUSG00000059429	FS	Y/YX	254	Olfr365	ENSMUST00000218602.1:c.762dup	ENSMUSP00000151617.1:p.Gly255TrpfsTer9	H-2-Kb	9	8	5	VLFYWEYHL	NA	NetMHCpan	45.2	NA	NA	261	0.245	95.931	NA	NA	NA	82.69	NA	45.2	NA	109.1716816	NA	130.6922997	M3	-0.514285714	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.257	261	0	0	NA	2qB	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr2	86445613	86445613	T	C	ENSMUST00000217586.2	5	ENSMUSG00000111306	missense	Y/C	123	Olfr1065	ENSMUST00000217586.2:c.368A>G	ENSMUSP00000149248.1:p.Tyr123Cys	H-2-Kb	9	6	6	MSYDRCVAI	MSYDRYVAI	NetMHCpan	74.8	9.3	0.124	258	0.112	107.253	21.056	0.196	15.55	99.36	9.3	74.8	32.36756285	151.7434661	26.56134116	115.1463034	M3	0.528571429	0.528571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;MuSe;Vardict	3	0.114	258	0	0	NA	2qD	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	1	0.488186096	sgMsh2	cell line
chr2	86160070	86160070	T	C	ENSMUST00000215624.1	NA	ENSMUSG00000075202	missense	Q/R	100	Olfr1042	ENSMUST00000215624.1:c.299A>G	ENSMUSP00000151053.1:p.Gln100Arg	H-2-Kb	9	4	8	TFYACATRL	TFYACATQL	NetMHC	130.05	202.58	1.558	336	0.14	226.469	285.13	1.259	202.58	130.05	232	133.6	430.63567	330.4532291	338.259498	319.3375581	M3	0.485714286	0.885714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.146	336	0	0	NA	2qD	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	1	0.62522079	sgMsh2	cell line
chr2	32096059	32096059	A	G	ENSMUST00000057423.5	1	ENSMUSG00000051373	missense	N/S	83	Plpp7	ENSMUST00000057423.5:c.248A>G	ENSMUSP00000054337.5:p.Asn83Ser	H-2-Kb	9	8	4	IAFSSLLAI	IAFNSLLAI	NetMHCpan	126.5	133.2	1.053	29	0.276	230.074	260.76	1.133	180.13	192.78	133.2	126.5	380.2857045	267.3683525	341.3893746	329.0409876	M3	2.157142857	2.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.298	29	0	0	NA	2qB	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr2	37085433	37085433	A	C	ENSMUST00000214969.1	5	ENSMUSG00000075378	missense	M/R	105	Olfr361	ENSMUST00000214969.1:c.314T>G	ENSMUSP00000149234.1:p.Met105Arg	H-2-Kb	9	8	4	FSFRTVGSM	FSFMTVGSM	NetMHC	223	207.93	0.932	218	0.266	464.706	385.207	0.829	207.93	223	201	246.9	562.4837755	682.5115418	563.9622051	740.0311486	M3	0.357142857	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.27	218	0	0	NA	2qB	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr19	60543015	60543015	A	G	ENSMUST00000081790.14	1	ENSMUSG00000033417	missense	L/P	272	Cacul1	ENSMUST00000081790.14:c.815T>C	ENSMUSP00000080480.7:p.Leu272Pro	H-2-Kb	9	7	5	HIYSPMPLL	HIYSLMPLL	SMM	223.929	166.001	0.741	176	0.131	350.975	195.01	0.556	172.52	267.65	217.5	434.3	166.0007308	223.9288243	260.7654204	445.9128626	M3	0.6	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.128	176	373	46	0.123324397	19qD3	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.548138775	sgMsh2	cell line
chr2	37414545	37414545	A	G	ENSMUST00000100143.9	5	ENSMUSG00000075376	missense	F/L	68	Rc3h2	ENSMUST00000100143.9:c.202T>C	ENSMUSP00000097721.3:p.Phe68Leu	H-2-Kb	9	9	3	VNLALLQLV	VNFALLQLV	NetMHC	330.6	79.15	0.239	69	0.29	408.521	107.778	0.264	79.15	330.6	84	576.7	131.5558	369.0710667	161.5288124	447.9711029	M3	2.528571429	2.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.322	69	59	15	0.254237288	2qB	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr2	82256483	82256483	A	T	ENSMUST00000047527.7	1	ENSMUSG00000070866	missense	T/S	219	Zfp804a	ENSMUST00000047527.7:c.655A>T	ENSMUSP00000041941.7:p.Thr219Ser	H-2-Kb	9	4	8	FAFPKKASV	FAFPKKATV	NetMHC	359.39	373.83	1.04	175	0.206	445.232	458.695	1.03	373.83	359.39	412.6	398.3	504.7891366	492.1641774	534.872168	502.6318444	M3	-0.2	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.204	175	0	0	NA	2qD	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	1	0.873596172	sgMsh2	cell line
chr2	87656102	87656102	A	AT	ENSMUST00000135875.3	5	ENSMUSG00000111747	FS	M/NX	273	Olfr1134	ENSMUST00000135875.3:c.817dup	ENSMUSP00000150837.1:p.Met273AsnfsTer23	H-2-Kb	9	20	0	DSYVKPTYL	NA	SMM	254.748	NA	NA	352	0.27	435.96	NA	NA	NA	486.22	NA	545.4	NA	254.7475407	NA	385.7003207	M3	-0.114285714	-0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.27	352	0	0	NA	2qD	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	2	1	sgMsh2	cell line
chr2	86347406	86347406	T	C	ENSMUST00000213564.2	5	ENSMUSG00000075189	missense	Y/C	120	Olfr1055	ENSMUST00000213564.2:c.359A>G	ENSMUSP00000149219.1:p.Tyr120Cys	H-2-Kb	9	9	3	MACDRYVAI	MAYDRYVAI	SMMPMBEC	240.021	33.439	0.139	228	0.061	487.773	30.259	0.062	27.08	527.72	14.4	804.5	39.27443988	447.8267173	33.43874735	240.0214196	M3	0.528571429	0.528571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.056	228	0	0	NA	2qD	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	1	0.239810714	sgMsh2	cell line
chr2	37202003	37202003	A	AT	ENSMUST00000218602.1	5	ENSMUSG00000059429	FS	Y/YX	254	Olfr365	ENSMUST00000218602.1:c.762dup	ENSMUSP00000151617.1:p.Gly255TrpfsTer9	H-2-Kb	9	10	3	FYWEYHLCL	NA	SMMPMBEC	298.71	NA	NA	261	0.245	449.646	NA	NA	NA	994.26	NA	502	NA	397.2921646	NA	298.7101638	M3	0.171428571	0.171428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.257	261	0	0	NA	2qB	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr2	158768178	158768178	C	T	ENSMUST00000029183.2	1	ENSMUSG00000027654	missense	P/L	22	Fam83d	ENSMUST00000029183.2:c.65C>T	ENSMUSP00000029183.2:p.Pro22Leu	H-2-Db	9	8	4	CGPLNPTEL	CGPPNPTEL	NetMHC	65.56	425.32	6.487	37	0.162	216.905	644.766	2.973	425.32	65.56	306.4	93.7	864.2114181	340.1104688	1154.968129	410.7428385	M3	-0.471428571	-0.214285714	TRUE	FALSE	FALSE	1	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.157	37	5	1	0.2	2qH1	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	0.672326466	sgMsh2	cell line
chr2	144502992	144502992	T	G	ENSMUST00000081982.11	1	ENSMUSG00000037259	missense	N/H	282	Dzank1	ENSMUST00000081982.11:c.844A>C	ENSMUSP00000080643.5:p.Asn282His	H-2-Db	9	6	6	SMVPMHTPI	SMVPMNTPI	NetMHCpan	144	267.7	1.859	92	0.239	187.569	250.676	1.336	283.68	162.51	267.7	144	221.1159138	212.6277776	233.6522675	228.3336925	M3	0.5	0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	92	0	0	NA	2qG1	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr2	91212313	91212313	T	C	ENSMUST00000028696.4	1	ENSMUSG00000002109	missense	N/D	401	Ddb2	ENSMUST00000028696.4:c.1201A>G	ENSMUSP00000028696.4:p.Asn401Asp	H-2-Db	9	5	7	TSLNEFDPM	TSLNEFNPM	NetMHCpan	311.5	820.6	2.634	260	0.231	424.011	1056.963	2.493	3969.66	1659.2	820.6	311.5	1263.63021	492.7424743	850.2957336	355.2793781	M3	-0.514285714	-0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.224	260	86	22	0.255813953	2qE1	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	2	0.959242856	sgMsh2	cell line
chr2	89977882	89977882	C	T	ENSMUST00000111512.9	2	ENSMUSG00000042894	missense	L/F	35	Olfr1260	ENSMUST00000111512.9:c.103C>T	ENSMUSP00000107137.1:p.Leu35Phe	H-2-Kb	8	7	5	LIYSFTLI	LIYSLTLI	NetMHCpan	11.9	188.2	15.815	257	0.086	32.154	424.803	13.211	291.47	11.98	188.2	11.9	654.2443789	62.04974485	558.1359543	52.32870654	M3	1.828571429	1.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.092	257	0	0	NA	2qE1	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	1	0.393974744	sgMsh2	cell line
chr2	89296493	89296493	G	T	ENSMUST00000099787.1	NA	ENSMUSG00000075094	missense	P/H	259	Olfr1230	ENSMUST00000099787.1:c.776C>A	ENSMUSP00000097375.1:p.Pro259His	H-2-Kb	8	5	7	IILYMRHV	IILYMRPV	NetMHC	110.45	93.66	0.848	204	0.162	275.635	190.876	0.692	93.66	110.45	196.7	268.3	189.5570756	290.8975074	192.1940772	282.9697428	M3	0.771428571	0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.164	204	0	0	NA	2qE1	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	1	0.702302805	sgMsh2	cell line
chr2	132240580	132240580	A	G	ENSMUST00000110164.7	2	ENSMUSG00000027341	missense	F/S	90	Tmem230	ENSMUST00000110164.7:c.269T>C	ENSMUSP00000105793.1:p.Phe90Ser	H-2-Kb	8	11	1	SLPGFYHL	FLPGFYHL	NetMHCpan	98.2	522.1	5.317	133	0.173	164.475	459.527	2.794	694.44	114.79	522.1	98.2	387.9180607	214.1608096	396.9538331	229.4774419	M3	0.557142857	0.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.198	133	34	8	0.235294118	2qF2	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	0.847902167	sgMsh2	cell line
chr2	91480474	91480474	A	G	ENSMUST00000028689.3	1	ENSMUSG00000027253	missense	H/R	620	Lrp4	ENSMUST00000028689.3:c.1859A>G	ENSMUSP00000028689.3:p.His620Arg	H-2-Kb	8	11	1	RVIERANL	HVIERANL	NetMHCpan	173.1	960.6	5.549	55	0.2	250.512	917.53	3.663	984.16	192.18	960.6	173.1	874.4601036	330.1718172	660.2980276	308.8445912	M3	0.4	0.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.19	55	0	0	NA	2qE1	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	1	0.813643494	sgMsh2	cell line
chr2	88034611	88034611	T	C	ENSMUST00000129056.2	2	ENSMUSG00000075140	missense	N/S	176	Olfr73	ENSMUST00000129056.2:c.527A>G	ENSMUSP00000149472.1:p.Asn176Ser	H-2-Kb	8	10	2	ISHFFCEF	INHFFCEF	NetMHCpan	49.3	91.5	1.856	123	0.203	240.521	452.759	1.882	314.31	197.42	91.5	49.3	699.4231455	378.2160895	591.2075887	283.6220554	M3	0.485714286	0.728571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.193	123	0	0	NA	2qD	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	1	0.826490496	sgMsh2	cell line
chr2	130240140	130240140	TG	T	ENSMUST00000077988.7	1	ENSMUSG00000060332	FS	L/X	414	Tmc2	ENSMUST00000077988.7:c.1243del	ENSMUSP00000077139.1:p.Ala415ProfsTer20	H-2-Kb	8	12	1	PTFSFSAV	NA	SMM	143.794	NA	NA	159	0.208	196.942	NA	NA	NA	225.33	NA	240.5	NA	143.7937467	NA	168.5543635	M3	1.328571429	1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.221	159	0	0	NA	2qF1	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	0.946395853	sgMsh2	cell line
chr2	119139420	119139420	GT	G	ENSMUST00000094695.11	1	ENSMUSG00000070730	FS	T/X	387	Rmdn3	ENSMUST00000094695.11:c.1159del	ENSMUSP00000092283.5:p.Thr387ArgfsTer46	H-2-Kb	8	37	0	YSQDFQKL	NA	SMM	227.898	NA	NA	124	0.21	263.57	NA	NA	NA	233.55	NA	302.9	NA	227.8977303	NA	293.5891489	M3	-1.228571429	-1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2097	124	26	0	0	2qE5	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	0.898005477	sgMsh2	cell line
chr2	88101738	88101738	A	C	ENSMUST00000117860.1	NA	ENSMUSG00000046590	missense	L/R	83	Olfr1165-ps	ENSMUST00000117860.1:c.248T>G	ENSMUSP00000149054.1:p.Leu83Arg	H-2-Kb	8	5	7	SVFTPKRL	SVFTPKLL	SMMPMBEC	174.88	413.752	2.366	234	0.141	193.199	403.987	2.091	456.57	249.7	309.9	209.9	394.2212222	176.4980859	413.7518989	174.8799418	M3	0.014285714	0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.139	234	0	0	NA	2qD	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	1	0.595244451	sgMsh2	cell line
chr2	88794555	88794555	T	C	ENSMUST00000216213.1	5	ENSMUSG00000059023	missense	Y/H	58	Olfr1201	ENSMUST00000216213.1:c.172T>C	ENSMUSP00000150454.1:p.Tyr58His	H-2-Kb	8	10	2	MHFFLFYL	MYFFLFYL	SMM	74.087	119.327	1.611	359	0.148	100.741	203.67	2.022	318.98	257.59	277.4	112	119.3273511	74.08665723	129.9391436	89.4828896	M3	1.642857143	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.155	359	0	0	NA	2qE1	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	1	0.663761798	sgMsh2	cell line
chr2	110738777	110738777	T	A	ENSMUST00000099623.9	5	ENSMUSG00000074968	missense	I/L	481	Ano3	ENSMUST00000099623.9:c.1441A>T	ENSMUSP00000097219.3:p.Ile481Leu	H-2-Kb	8	4	8	FFAIFMAL	FFAIFMAI	SMM	78.839	511.376	6.486	43	0.186	232.827	1428.596	6.136	2048.58	324.81	2868.6	940.3	511.3755976	78.83879904	808.611661	140.8445349	M3	2.771428571	2.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.209	43	0	0	NA	2qE3	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	0.895007843	sgMsh2	cell line
chr2	128685915	128685915	T	C	ENSMUST00000014499.9	1	ENSMUSG00000014355	missense	Q/R	41	Anapc1	ENSMUST00000014499.9:c.122A>G	ENSMUSP00000014499.3:p.Gln41Arg	H-2-Kb	8	5	7	LNLQLRRL	LNLQLRQL	SMM	216.641	373.887	1.726	106	0.208	275.027	456.143	1.659	735.41	356.54	538.4	330.4	373.8866857	216.6406749	356.2377999	219.6544469	M3	-0.657142857	-0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.22	106	59	11	0.186440678	2qF1	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	0.942113519	sgMsh2	cell line
chr2	88767458	88767458	T	A	ENSMUST00000217588.2	5	ENSMUSG00000075115	missense	T/S	286	Olfr1200	ENSMUST00000217588.2:c.856A>T	ENSMUSP00000149757.1:p.Thr286Ser	H-2-Kb	8	8	4	VIYSLRNS	VIYTLRNS	SMM	80.675	74.945	0.929	357	0.123	290.039	253.26	0.873	376.58	439.88	1232.4	1339.4	74.94454029	80.67519058	129.9391436	140.197413	M3	-0.371428571	0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.124	357	0	0	NA	2qE1	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	1	0.531009438	sgMsh2	cell line
chr2	132240580	132240580	A	G	ENSMUST00000110164.7	2	ENSMUSG00000027341	missense	F/S	90	Tmem230	ENSMUST00000110164.7:c.269T>C	ENSMUSP00000105793.1:p.Phe90Ser	H-2-Kb	9	10	2	VSLPGFYHL	VFLPGFYHL	NetMHC	22.77	187.13	8.218	133	0.173	93.901	246.108	2.621	187.13	22.77	200.4	30	291.8166046	157.8010905	341.3893746	169.9221522	M3	0.557142857	0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.198	133	34	8	0.235294118	2qF2	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	0.847902167	sgMsh2	cell line
chr2	112042552	112042552	A	G	ENSMUST00000213961.2	5	ENSMUSG00000074947	missense	V/A	160	Olfr1312	ENSMUST00000213961.2:c.479T>C	ENSMUSP00000150415.1:p.Val160Ala	H-2-Kb	9	6	6	VQLAFAVNL	VQLAFVVNL	NetMHC	26.8	25.64	0.957	286	0.266	182.136	162.886	0.894	25.64	26.8	29.8	26.9	313.4079437	337.3727491	295.9715726	382.1641989	M3	2.1	2.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.266	286	0	0	NA	2qE3	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr2	89013584	89013584	A	G	ENSMUST00000217000.1	5	ENSMUSG00000075107	missense	I/T	160	Olfr1216	ENSMUST00000217000.1:c.479T>C	ENSMUSP00000149441.1:p.Ile160Thr	H-2-Kb	9	10	2	VTFTLQLPL	VIFTLQLPL	NetMHCpan	22.1	29.4	1.33	354	0.175	77.388	75.367	0.974	58.24	51.44	29.4	22.1	92.49324152	109.6755952	94.24319478	103.3356082	M3	1.2	1.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.169	354	0	0	NA	2qE1	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	1	0.723714476	sgMsh2	cell line
chr2	89977882	89977882	C	T	ENSMUST00000111512.9	2	ENSMUSG00000042894	missense	L/F	35	Olfr1260	ENSMUST00000111512.9:c.103C>T	ENSMUSP00000107137.1:p.Leu35Phe	H-2-Kb	9	9	3	YSFTLIGNL	YSLTLIGNL	NetMHCpan	30.8	159.7	5.185	257	0.086	163.774	484.819	2.96	207.12	52.6	159.7	30.8	937.7995068	334.2796971	762.5178243	274.9476424	M3	1.471428571	1.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.092	257	0	0	NA	2qE1	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	1	0.393974744	sgMsh2	cell line
chr2	151706653	151706653	T	C	ENSMUST00000060196.2	1	ENSMUSG00000044364	missense	V/A	100	Tmem74b	ENSMUST00000060196.2:c.299T>C	ENSMUSP00000060017.2:p.Val100Ala	H-2-Kb	9	6	6	VDYGFASAL	VDYGFVSAL	NetMHC	61.82	58.19	0.941	44	0.318	78.38	73.491	0.938	58.19	61.82	68.8	72.6	78.18258038	84.16082809	79.66177885	102.8608242	M3	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.311	44	0	0	NA	2qG3	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr2	110738777	110738777	T	A	ENSMUST00000099623.9	5	ENSMUSG00000074968	missense	I/L	481	Ano3	ENSMUST00000099623.9:c.1441A>T	ENSMUSP00000097219.3:p.Ile481Leu	H-2-Kb	9	3	9	VFFAIFMAL	VFFAIFMAI	NetMHC	66.1	284.24	4.3	43	0.186	88.015	251.715	2.86	284.24	66.1	262.3	81.6	234.4822647	94.43000224	241.1293081	104.2917608	M3	2.771428571	2.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.209	43	0	0	NA	2qE3	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	0.895007843	sgMsh2	cell line
chr2	111335694	111335694	C	A	ENSMUST00000099618.1	NA	ENSMUSG00000096554	missense	R/M	128	Olfr1282	ENSMUST00000099618.1:c.383G>T	ENSMUSP00000097213.1:p.Arg128Met	H-2-Kb	9	10	2	CMPLHYSSI	CRPLHYSSI	NetMHC	94.4	1410.95	14.947	588	0.165	136.949	1266.807	9.25	1410.95	94.4	2800.2	169.4	724.6194716	104.4984864	1122.664526	174.2809827	M3	0.085714286	0.185714286	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.164	588	0	0	NA	2qE3	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	0.702302805	sgMsh2	cell line
chr2	88896946	88896946	A	G	ENSMUST00000214297.1	5	ENSMUSG00000075114	missense	I/T	217	Olfr1208	ENSMUST00000214297.1:c.650T>C	ENSMUSP00000149695.1:p.Ile217Thr	H-2-Kb	9	7	5	ISYITILSI	ISYIIILSI	NetMHCpan	74.4	161.2	2.167	319	0.207	183.527	264.472	1.441	264.55	114.06	161.2	74.4	347.6241981	252.9938709	264.3930288	253.0754397	M3	2.071428571	2.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.213	319	0	0	NA	2qE1	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	1	0.91213718	sgMsh2	cell line
chr2	89013584	89013584	A	G	ENSMUST00000217000.1	5	ENSMUSG00000075107	missense	I/T	160	Olfr1216	ENSMUST00000217000.1:c.479T>C	ENSMUSP00000149441.1:p.Ile160Thr	H-2-Kb	9	8	4	VQVTFTLQL	VQVIFTLQL	NetMHCpan	78.9	118.6	1.503	354	0.175	216.847	205.068	0.946	149.97	129.43	118.6	78.9	315.5803838	368.2222268	260.1656766	304.2636004	M3	1.385714286	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.169	354	0	0	NA	2qE1	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	1	0.723714476	sgMsh2	cell line
chr2	89296493	89296493	G	T	ENSMUST00000099787.1	NA	ENSMUSG00000075094	missense	P/H	259	Olfr1230	ENSMUST00000099787.1:c.776C>A	ENSMUSP00000097375.1:p.Pro259His	H-2-Kb	9	4	8	CIILYMRHV	CIILYMRPV	NetMHC	155.05	143.07	0.923	204	0.162	464.071	356.564	0.768	143.07	155.05	281.5	349.9	431.6283877	578.2424886	594.6343592	796.6177885	M3	0.771428571	1.628571429	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.164	204	0	0	NA	2qE1	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	1	0.702302805	sgMsh2	cell line
chr2	89977882	89977882	C	T	ENSMUST00000111512.9	2	ENSMUSG00000042894	missense	L/F	35	Olfr1260	ENSMUST00000111512.9:c.103C>T	ENSMUSP00000107137.1:p.Leu35Phe	H-2-Kb	9	5	7	FALIYSFTL	FALIYSLTL	NetMHCpan	140.7	135.8	0.965	257	0.086	203.151	234.631	1.155	217.43	180.82	135.8	140.7	251.8314697	225.4810248	297.3377153	291.9106903	M3	1.728571429	1.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.092	257	0	0	NA	2qE1	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	1	0.393974744	sgMsh2	cell line
chr2	91284247	91284247	A	G	ENSMUST00000102594.10	1	ENSMUSG00000040591	missense	F/L	147	1110051M20Rik	ENSMUST00000102594.10:c.439T>C	ENSMUSP00000099654.4:p.Phe147Leu	H-2-Kb	9	8	4	QIQLYYSEF	QIQFYYSEF	SMM	177.873	191.034	1.074	168	0.167	233.567	248.13	1.062	224.46	181.21	352.1	442.3	191.0337056	177.8729877	271.8003427	285.9235978	M3	-0.542857143	-0.3	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.176	168	58	8	0.137931034	2qE1	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	1	0.753690815	sgMsh2	cell line
chr2	119139420	119139420	GT	G	ENSMUST00000094695.11	1	ENSMUSG00000070730	FS	T/X	387	Rmdn3	ENSMUST00000094695.11:c.1159del	ENSMUSP00000092283.5:p.Thr387ArgfsTer46	H-2-Kb	9	45	0	DGYIFLSAI	NA	NetMHC	187.49	NA	NA	124	0.21	309.473	NA	NA	NA	187.49	NA	212.4	NA	406.5462879	NA	510.7989549	M3	2.185714286	2.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2097	124	26	0	0	2qE5	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	0.898005477	sgMsh2	cell line
chr2	91284247	91284247	A	G	ENSMUST00000102594.10	1	ENSMUSG00000040591	missense	F/L	147	1110051M20Rik	ENSMUST00000102594.10:c.439T>C	ENSMUSP00000099654.4:p.Phe147Leu	H-2-Kb	9	9	3	IQLYYSEFL	IQFYYSEFL	NetMHCpan	192.4	29.6	0.154	168	0.167	382.31	125.453	0.328	51.33	204.72	29.6	192.4	199.5767748	559.8993973	219.4067579	608.4851727	M3	0.5	0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.176	168	58	8	0.137931034	2qE1	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	1	0.753690815	sgMsh2	cell line
chr2	144502992	144502992	T	G	ENSMUST00000081982.11	1	ENSMUSG00000037259	missense	N/H	282	Dzank1	ENSMUST00000081982.11:c.844A>C	ENSMUSP00000080643.5:p.Asn282His	H-2-Kb	9	6	6	SMVPMHTPI	SMVPMNTPI	NetMHCpan	204.7	977.9	4.777	92	0.239	291.792	890.02	3.05	1246.33	226.22	977.9	204.7	755.2835049	357.3633412	802.1396792	389.2691619	M3	0.5	0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	92	0	0	NA	2qG1	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr2	88794555	88794555	T	C	ENSMUST00000216213.1	5	ENSMUSG00000059023	missense	Y/H	58	Olfr1201	ENSMUST00000216213.1:c.172T>C	ENSMUSP00000150454.1:p.Tyr58His	H-2-Kb	9	11	1	HFFLFYLSF	YFFLFYLSF	SMM	65.934	42.083	0.638	359	0.148	164.189	97.984	0.597	139.96	233.7	867.9	956.3	42.08332054	65.93408748	56.00799166	94.67820161	M3	1.985714286	1.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.155	359	0	0	NA	2qE1	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	1	0.663761798	sgMsh2	cell line
chr2	91284247	91284247	A	G	ENSMUST00000102594.10	1	ENSMUSG00000040591	missense	F/L	147	1110051M20Rik	ENSMUST00000102594.10:c.439T>C	ENSMUSP00000099654.4:p.Phe147Leu	H-2-Kb	9	3	9	FLFAFQIQL	FLFAFQIQF	NetMHCpan	235.9	1129.7	4.789	168	0.167	317.333	742.822	2.341	735.56	268.86	1129.7	235.9	750.0841699	444.7438999	632.7760017	365.8053055	M3	1.242857143	2.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.176	168	58	8	0.137931034	2qE1	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	1	0.753690815	sgMsh2	cell line
chr2	89977882	89977882	C	T	ENSMUST00000111512.9	2	ENSMUSG00000042894	missense	L/F	35	Olfr1260	ENSMUST00000111512.9:c.103C>T	ENSMUSP00000107137.1:p.Leu35Phe	H-2-Kb	9	3	9	VIFALIYSF	VIFALIYSL	SMM	272.339	161.477	0.593	257	0.086	305.185	129.778	0.425	98.08	292.5	57.7	414.6	161.47675	272.3391013	183.7595844	317.8703353	M3	1.942857143	2.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.092	257	0	0	NA	2qE1	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	1	0.393974744	sgMsh2	cell line
chr2	91212313	91212313	T	C	ENSMUST00000028696.4	1	ENSMUSG00000002109	missense	N/D	401	Ddb2	ENSMUST00000028696.4:c.1201A>G	ENSMUSP00000028696.4:p.Asn401Asp	H-2-Kb	9	5	7	TSLNEFDPM	TSLNEFNPM	NetMHC	293.8	93.15	0.317	260	0.231	405.271	170.16	0.42	93.15	293.8	137.5	472.5	202.8196365	433.6206938	206.1816449	376.9207095	M3	-0.514285714	-0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.224	260	86	22	0.255813953	2qE1	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	2	0.959242856	sgMsh2	cell line
chr2	117177703	117177703	A	G	ENSMUST00000028829.12	1	ENSMUSG00000027351	missense	I/M	363	Spred1	ENSMUST00000028829.12:c.1089A>G	ENSMUSP00000028829.6:p.Ile363Met	H-2-Kb	9	10	2	CMYQVSCML	CIYQVSCML	SMM	228.618	511.811	2.239	191	0.199	331.205	563.356	1.701	483.81	295.31	614.9	367.1	511.811453	228.6177783	851.6281337	411.386466	M3	0.971428571	0.971428571	TRUE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.215	191	160	46	0.2875	2qE5	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	0.920701848	sgMsh2	cell line
chr2	88896946	88896946	A	G	ENSMUST00000214297.1	5	ENSMUSG00000075114	missense	I/T	217	Olfr1208	ENSMUST00000214297.1:c.650T>C	ENSMUSP00000149695.1:p.Ile217Thr	H-2-Kb	9	5	7	LVISYITIL	LVISYIIIL	NetMHCpan	136.8	607.9	4.444	319	0.207	297.255	480.237	1.616	707.28	319.65	607.9	136.8	290.4758291	274.859024	352.5737704	320.8115533	M3	2.071428571	2.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.213	319	0	0	NA	2qE1	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	1	0.91213718	sgMsh2	cell line
chr2	120986661	120986661	A	G	ENSMUST00000067582.13	1	ENSMUSG00000054484	missense	T/A	233	Tmem62	ENSMUST00000067582.13:c.697A>G	ENSMUSP00000064310.7:p.Thr233Ala	H-2-Kb	9	4	8	IWFGHFTAS	IWFGHFTTS	SMM	41.22	43.763	1.062	103	0.398	221.645	251.959	1.137	420.31	365.62	547.3	671	43.76329367	41.22019102	83.60841685	77.6694089	M3	0.328571429	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.39	103	15	7	0.466666667	2qE5	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	2	1	sgMsh2	cell line
chr2	110738777	110738777	T	A	ENSMUST00000099623.9	5	ENSMUSG00000074968	missense	I/L	481	Ano3	ENSMUST00000099623.9:c.1441A>T	ENSMUSP00000097219.3:p.Ile481Leu	H-2-Kb	9	7	5	IFMALWATV	IFMAIWATV	NetMHC	392.73	768.5	1.957	43	0.186	446.418	790.899	1.772	768.5	392.73	567.5	397.1	986.5293264	583.5929005	813.2985537	495.735477	M3	1.7	2.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.209	43	0	0	NA	2qE3	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	0.895007843	sgMsh2	cell line
chr2	149407305	149407305	T	G	ENSMUST00000047008.8	1	ENSMUSG00000033156	missense	L/V	92	Cst10	ENSMUST00000047008.8:c.274T>G	ENSMUSP00000043520.2:p.Leu92Val	H-2-Kb	9	7	5	KNYYVKIEL	KNYYLKIEL	NetMHCpan	293.7	136.1	0.463	227	0.194	432.908	202.967	0.469	191.59	419.02	136.1	293.7	214.3433431	446.7967444	279.4151821	551.1248581	M3	0.357142857	0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.213	227	0	0	NA	2qG3	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	0.91213718	sgMsh2	cell line
chr2	88794555	88794555	T	C	ENSMUST00000216213.1	5	ENSMUSG00000059023	missense	Y/H	58	Olfr1201	ENSMUST00000216213.1:c.172T>C	ENSMUSP00000150454.1:p.Tyr58His	H-2-Kb	9	7	5	GSPMHFFLF	GSPMYFFLF	SMM	299.302	239.944	0.802	359	0.148	332.253	254.008	0.765	359.52	467.22	211.9	327.8	239.9440583	299.3022626	268.0711022	336.7053368	M3	1.328571429	1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.155	359	0	0	NA	2qE1	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	1	0.663761798	sgMsh2	cell line
chr2	119921746	119921746	GT	G	ENSMUST00000110774.7	5	ENSMUSG00000033943	FS	F/X	774	Mga	ENSMUST00000110774.7:c.2322del	ENSMUSP00000106401.1:p.Pro775LeufsTer39	H-2-Kb	9	31	0	ENFKMLLHL	NA	NetMHCpan	313.7	NA	NA	136	0.294	347.684	NA	NA	NA	658.3	NA	313.7	NA	346.02701	NA	349.3413547	M3	1.285714286	1.285714286	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2	2	0.311	136	48	0	0	2qE5	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr2	88794555	88794555	T	C	ENSMUST00000216213.1	5	ENSMUSG00000059023	missense	Y/H	58	Olfr1201	ENSMUST00000216213.1:c.172T>C	ENSMUSP00000150454.1:p.Tyr58His	H-2-Kb	9	9	3	PMHFFLFYL	PMYFFLFYL	SMM	99.566	17.503	0.176	359	0.148	493.774	110.51	0.224	190.1	819.57	486.9	1090.9	17.50289954	99.56575699	30.92074862	167.9770694	M3	1.642857143	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.155	359	0	0	NA	2qE1	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	1	0.663761798	sgMsh2	cell line
chr2	178354939	178354939	G	A	ENSMUST00000081134.9	1	ENSMUSG00000060445	missense	P/L	1157	Sycp2	ENSMUST00000081134.9:c.3470C>T	ENSMUSP00000079909.3:p.Pro1157Leu	H-2-Db	9	9	3	YSLASGPPF	YSPASGPPF	NetMHC	383.66	992.3	2.586	145	0.262	434.425	1327.158	3.055	992.3	383.66	1149.2	416.4	1590.816182	489.350459	1505.116095	452.4493827	M3	0.571428571	0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.28	145	0	0	NA	2qH4	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr3	95847420	95847420	T	C	ENSMUST00000015892.13	1	ENSMUSG00000015748	missense	N/S	228	Prpf3	ENSMUST00000015892.13:c.683A>G	ENSMUSP00000015892.7:p.Asn228Ser	H-2-Db	11	11	1	SMVGLANLHAM	NMVGLANLHAM	NetMHC	94.12	421.17	4.475	36	0.361	297.407	663.917	2.232	421.17	94.12	768	112.8	559.8349402	482.0143858	3426.573091	2957.05907	M3	0.914285714	1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.38	36	62	16	0.258064516	3qF2.1	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	2	1	sgMsh2	cell line
chr3	105005546	105005546	C	A	ENSMUST00000077548.11	1	ENSMUSG00000062127	missense	A/S	341	Cttnbp2nl	ENSMUST00000077548.11:c.1021G>T	ENSMUSP00000076751.5:p.Ala341Ser	H-2-Kb	8	11	1	SAYSYAKA	AAYSYAKA	NetMHC	11.09	24.13	2.176	100	0.34	44.921	75.024	1.67	24.13	11.09	53.5	32.2	129.0446488	68.82401428	96.54727043	57.64212727	M3	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.345	100	77	17	0.220779221	3qF2.2	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	2	1	sgMsh2	cell line
chr3	79512526	79512526	C	A	ENSMUST00000076136.6	5	ENSMUSG00000061175	missense	G/C	148	Fnip2	ENSMUST00000076136.6:c.442G>T	ENSMUSP00000075497.4:p.Gly148Cys	H-2-Kb	8	7	5	MSYKCSTL	MSYKGSTL	NetMHC	15.05	52.48	3.487	176	0.199	23.118	65.298	2.825	52.48	15.05	43.7	16.4	87.04423244	30.32075422	78.11600059	29.83595888	M3	-0.171428571	-0.171428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.191	176	24	7	0.291666667	3qE3	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	0.817925828	sgMsh2	cell line
chr3	88449705	88449705	T	C	ENSMUST00000029700.11	1	ENSMUSG00000028064	missense	I/V	320	Sema4a	ENSMUST00000029700.11:c.958A>G	ENSMUSP00000029700.5:p.Ile320Val	H-2-Kb	8	8	4	VSRVYAVF	VSRIYAVF	NetMHC	46.39	61.42	1.324	60	0.183	77.618	86.384	1.113	61.42	46.39	74.2	72.3	105.1332282	96.76983488	98.56892043	82.93541077	M3	0.914285714	1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.198	60	6	1	0.166666667	3qF1	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	0.847902167	sgMsh2	cell line
chr3	108624645	108624645	A	G	ENSMUST00000051145.14	1	ENSMUSG00000040389	missense	Q/R	449	Wdr47	ENSMUST00000051145.14:c.1346A>G	ENSMUSP00000057482.8:p.Gln449Arg	H-2-Kb	8	11	1	RMYQQMLL	QMYQQMLL	NetMHC	67.4	94.29	1.399	91	0.341	121.812	213.148	1.75	94.29	67.4	182.1	93.4	244.1968177	150.2242346	524.4933667	251.0383085	M3	0.442857143	0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.35	91	11	2	0.181818182	3qF3	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	2	1	sgMsh2	cell line
chr3	95847420	95847420	T	C	ENSMUST00000015892.13	1	ENSMUSG00000015748	missense	N/S	228	Prpf3	ENSMUST00000015892.13:c.683A>G	ENSMUSP00000015892.7:p.Asn228Ser	H-2-Kb	8	11	1	SMVGLANL	NMVGLANL	NetMHC	81.28	2354.1	28.963	36	0.361	171.835	1476.462	8.592	2354.1	81.28	1474.7	111	1478.223152	232.6697911	1376.385219	242.5157786	M3	1.657142857	1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.38	36	62	16	0.258064516	3qF2.1	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	2	1	sgMsh2	cell line
chr3	96699439	96699439	G	C	ENSMUST00000064900.15	1	ENSMUSG00000028101	missense	R/P	15	Pias3	ENSMUST00000064900.15:c.44G>C	ENSMUSP00000069259.9:p.Arg15Pro	H-2-Kb	8	8	4	MSFPVSEL	MSFRVSEL	NetMHCpan	65.4	23.7	0.362	35	0.229	90.805	32.02	0.353	18.83	87.91	23.7	65.4	40.3403814	93.70008827	45.7867692	129.3421274	M3	0.585714286	0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.258	35	18	6	0.333333333	3qF2.1	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr3	28794409	28794409	G	A	ENSMUST00000060500.8	1	ENSMUSG00000050192	missense	C/Y	139	Eif5a2	ENSMUST00000060500.8:c.416G>A	ENSMUSP00000050289.7:p.Cys139Tyr	H-2-Kb	8	7	5	VSVMYAMS	VSVMCAMS	SMM	72.734	814.217	11.194	199	0.226	100.979	2855.808	28.281	5114.17	120.91	4897.4	389.8	814.2166892	72.73442335	792.027024	81.04757034	M3	0.985714286	1.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.223	199	30	2	0.066666667	3qA3	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	0.954960522	sgMsh2	cell line
chr3	62602681	62602681	C	T	ENSMUST00000058535.5	1	ENSMUSG00000043441	missense	G/R	338	Gpr149	ENSMUST00000058535.5:c.1012G>A	ENSMUSP00000060893.5:p.Gly338Arg	H-2-Kb	8	8	4	HVVRFQSL	HVVGFQSL	NetMHCpan	94.1	530	5.632	72	0.222	176.107	900.3	5.112	1288.64	123.79	530	94.1	999.401507	291.5680954	801.1982647	228.4230889	M3	0.885714286	0.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.234	72	0	0	NA	3qE1	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr3	90211937	90211937	T	TC	ENSMUST00000029548.8	5	ENSMUSG00000027939	FS	S/SX	1856	Nup210l	ENSMUST00000029548.8:c.5573dup	ENSMUSP00000029548.4:p.His1859SerfsTer?	H-2-Kb	8	30	0	LVMEYKTL	NA	NetMHCpan	47.5	NA	NA	107	0.234	193.558	NA	NA	NA	130.23	NA	47.5	NA	389.7086091	NA	256.8857419	M3	0.071428571	0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.232	107	2	0	0	3qF1	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	0.993501529	sgMsh2	cell line
chr3	103928888	103928888	T	C	ENSMUST00000068879.10	1	ENSMUSG00000044098	missense	I/T	414	Rsbn1	ENSMUST00000068879.10:c.1241T>C	ENSMUSP00000069246.4:p.Ile414Thr	H-2-Kb	8	5	7	AYYALATV	AYYALAIV	NetMHC	253.92	755.72	2.976	126	0.325	354.427	877.561	2.476	755.72	253.92	648.4	272.6	999.401507	436.2545806	1204.314735	461.0414792	M3	1.185714286	1.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.317	126	42	11	0.261904762	3qF2.2	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr3	116891951	116891951	T	C	ENSMUST00000195905.4	5	ENSMUSG00000033386	missense	Y/H	324	Frrs1	ENSMUST00000195905.4:c.970T>C	ENSMUSP00000143255.1:p.Tyr324His	H-2-Kb	8	10	2	SHYIFFAE	SYYIFFAE	SMM	62.193	100.171	1.611	129	0.264	189.236	314.034	1.659	494.18	286.27	516.8	344.9	100.1705365	62.19278428	133.88749	92.20192747	M3	0.557142857	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.276	129	132	16	0.121212121	3qG1	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr3	14481277	14481277	A	G	ENSMUST00000037321.7	1	ENSMUSG00000039710	missense	K/E	161	Slc7a12	ENSMUST00000037321.7:c.481A>G	ENSMUSP00000038574.7:p.Lys161Glu	H-2-Kb	8	7	5	SSFIELSV	SSFIKLSV	NetMHCpan	262.5	124.8	0.475	224	0.237	331.596	395.589	1.193	273.88	480.71	124.8	262.5	517.2970479	357.8821189	541.6765067	305.3092764	M3	1.457142857	1.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.238	224	0	0	NA	3qA1	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr3	68927791	68927791	A	G	ENSMUST00000107812.7	5	ENSMUSG00000027778	missense	I/T	439	Ift80	ENSMUST00000107812.7:c.1316T>C	ENSMUSP00000103442.1:p.Ile439Thr	H-2-Kb	8	11	1	TIFLFEAS	IIFLFEAS	SMM	114.483	40.902	0.357	74	0.311	496.639	214.122	0.431	378.83	1363.31	368.3	827.8	40.90157201	114.482736	59.94321055	165.4778997	M3	1.628571429	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.306	74	42	7	0.166666667	3qE1	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr3	14537323	14537323	A	G	ENSMUST00000169079.7	1	ENSMUSG00000027550	missense	T/A	159	Lrrcc1	ENSMUST00000169079.7:c.475A>G	ENSMUSP00000126560.1:p.Thr159Ala	H-2-Kb	9	5	7	VGLHFLANL	VGLHFLTNL	NetMHC	4.15	7.44	1.793	70	0.286	41.016	55.134	1.344	7.44	4.15	6.9	5.1	102.8276712	76.93252737	105.7426037	77.6694089	M3	1.328571429	1.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.282	70	31	4	0.129032258	3qA1	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr3	103928888	103928888	T	C	ENSMUST00000068879.10	1	ENSMUSG00000044098	missense	I/T	414	Rsbn1	ENSMUST00000068879.10:c.1241T>C	ENSMUSP00000069246.4:p.Ile414Thr	H-2-Kb	9	4	8	AAYYALATV	AAYYALAIV	NetMHC	58.87	162.1	2.754	126	0.325	163.252	247.691	1.517	162.1	58.87	234.7	93.1	260.6813732	233.4049166	369.1900603	312.7879401	M3	1.185714286	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.317	126	42	11	0.261904762	3qF2.2	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr3	95847420	95847420	T	C	ENSMUST00000015892.13	1	ENSMUSG00000015748	missense	N/S	228	Prpf3	ENSMUST00000015892.13:c.683A>G	ENSMUSP00000015892.7:p.Asn228Ser	H-2-Kb	9	10	2	ASMVGLANL	ANMVGLANL	NetMHC	69.93	144.72	2.069	36	0.361	271.597	316.748	1.166	144.72	69.93	96.6	103.4	488.776143	459.3143352	488.9337312	439.7947088	M3	1.657142857	1.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.38	36	62	16	0.258064516	3qF2.1	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	2	1	sgMsh2	cell line
chr3	97562644	97562644	TA	T	ENSMUST00000029730.4	1	ENSMUSG00000028089	FS	F/X	855	Chd1l	ENSMUST00000029730.4:c.2565del	ENSMUSP00000029730.4:p.Phe855LeufsTer67	H-2-Kb	9	31	0	LTYTTFPEV	NA	NetMHC	74.75	NA	NA	298	0.238	154.974	NA	NA	NA	74.75	NA	100	NA	209.947158	NA	249.6031145	M3	-0.114285714	0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.248	298	49	10	0.204081633	3qF2.1	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr3	62602681	62602681	C	T	ENSMUST00000058535.5	1	ENSMUSG00000043441	missense	G/R	338	Gpr149	ENSMUST00000058535.5:c.1012G>A	ENSMUSP00000060893.5:p.Gly338Arg	H-2-Kb	9	7	5	KHVVRFQSL	KHVVGFQSL	NetMHC	123.24	1672.99	13.575	72	0.222	308.967	1765.932	5.716	1672.99	123.24	1270.9	267.9	1884.126249	350.0338139	1858.874201	358.3026333	M3	0.885714286	0.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.234	72	0	0	NA	3qE1	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr3	116891951	116891951	T	C	ENSMUST00000195905.4	5	ENSMUSG00000033386	missense	Y/H	324	Frrs1	ENSMUST00000195905.4:c.970T>C	ENSMUSP00000143255.1:p.Tyr324His	H-2-Kb	9	10	2	SHYIFFAEG	SYYIFFAEG	NetMHC	123.41	230.42	1.867	129	0.264	130.94	148.813	1.137	230.42	123.41	199.2	193	98.4260372	136.4928808	94.8964574	125.3862749	M3	0.957142857	0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.276	129	132	16	0.121212121	3qG1	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr2	180472194	180472194	C	A	ENSMUST00000038225.7	1	ENSMUSG00000038963	missense	L/I	475	Slco4a1	ENSMUST00000038225.7:c.1423C>A	ENSMUSP00000045023.7:p.Leu475Ile	H-2-Kb	9	9	3	VFIMHCPNV	VFLMHCPNV	NetMHC	154.14	154.16	1	114	0.281	264.235	279.514	1.058	154.16	154.14	321.3	266.5	288.4762076	287.1507798	270.5515336	261.9690589	M3	0.685714286	1.585714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.287	114	8	1	0.125	2qH4	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr3	88652659	88652659	T	C	ENSMUST00000063119.4	NA	ENSMUSG00000049741	missense	T/A	162	Rxfp4	ENSMUST00000063119.4:c.484A>G	ENSMUSP00000058732.4:p.Thr162Ala	H-2-Kb	9	4	8	VFWARVVAL	VFWARVVTL	NetMHC	154.36	184.67	1.196	63	0.254	172.166	183.582	1.066	184.67	154.36	154.2	174.8	238.8416155	224.9624328	182.4945923	169.531342	M3	1.485714286	1.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.267	63	1	0	0	3qF1	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr3	14481277	14481277	A	G	ENSMUST00000037321.7	1	ENSMUSG00000039710	missense	K/E	161	Slc7a12	ENSMUST00000037321.7:c.481A>G	ENSMUSP00000038574.7:p.Lys161Glu	H-2-Kb	9	7	5	SSFIELSVL	SSFIKLSVL	NetMHCpan	88.9	31.7	0.357	224	0.237	169.262	50.82	0.3	40.51	167.48	31.7	88.9	65.63114787	171.044849	61.12938126	181.6561058	M3	2.114285714	2.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.238	224	0	0	NA	3qA1	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr3	68927791	68927791	A	G	ENSMUST00000107812.7	5	ENSMUSG00000027778	missense	I/T	439	Ift80	ENSMUST00000107812.7:c.1316T>C	ENSMUSP00000103442.1:p.Ile439Thr	H-2-Kb	9	11	1	TIFLFEAST	IIFLFEAST	NetMHC	181.4	78.59	0.433	74	0.311	236.705	140.504	0.594	78.59	181.4	219.4	418.7	139.6722084	239.3922023	141.3350901	234.0183969	M3	0.885714286	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.306	74	42	7	0.166666667	3qE1	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr3	121761416	121761416	T	C	ENSMUST00000029770.7	1	ENSMUSG00000028127	missense	E/G	634	Abcd3	ENSMUST00000029770.7:c.1901A>G	ENSMUSP00000029770.5:p.Glu634Gly	H-2-Kb	9	8	4	KHHGYYLHM	KHHEYYLHM	NetMHCpan	203.1	122.6	0.604	120	0.125	240.279	212.282	0.883	194.89	318.34	122.6	203.1	229.67303	237.1974414	243.3604501	243.3604501	M3	-0.528571429	-0.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.146	120	268	43	0.160447761	3qG1	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	0.62522079	sgMsh2	cell line
chr3	158318471	158318471	G	T	ENSMUST00000200137.4	1	ENSMUSG00000028176	missense	L/I	96	Lrrc7	ENSMUST00000200137.4:c.286C>A	ENSMUSP00000142498.1:p.Leu96Ile	H-2-Db	9	9	3	ASIVNLKEL	ASLVNLKEL	NetMHCpan	18.7	28.1	1.503	134	0.216	27.357	35.126	1.284	39.8	27.51	28.1	18.7	30.45229302	27.20320034	40.69771255	35.12125287	M3	0.771428571	0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.228	134	0	0	NA	3qH4	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	0.976372193	sgMsh2	cell line
chr4	127048748	127048748	A	G	ENSMUST00000106102.8	1	ENSMUSG00000043872	missense	F/L	616	Zmym1	ENSMUST00000106102.8:c.1846T>C	ENSMUSP00000101708.2:p.Phe616Leu	H-2-Db	9	8	4	CSLLNTVHV	CSLFNTVHV	NetMHCpan	65.9	115	1.745	124	0.258	134.513	212.264	1.578	172.4	100.13	115	65.9	252.1273737	168.8962473	297.5568825	191.2361536	M3	1.228571429	1.328571429	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.265	124	12	7	0.583333333	4qD2.2	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr4	128475742	128475742	A	C	ENSMUST00000184063.2	5	ENSMUSG00000028804	missense	E/A	1889	Csmd2	ENSMUST00000184063.2:c.5666A>C	ENSMUSP00000138958.2:p.Glu1889Ala	H-2-Db	9	9	3	VTAQNWDSL	VTEQNWDSL	NetMHCpan	100.1	1118	11.169	70	0.357	291.418	849.797	2.916	1567.14	189.63	1118	100.1	581.5941105	393.2058767	507.656557	415.4990164	M3	-0.942857143	-0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.375	70	0	0	NA	4qD2.2	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr4	75956378	75956378	C	A	ENSMUST00000173376.7	1	ENSMUSG00000028399	missense	R/M	1281	Ptprd	ENSMUST00000173376.7:c.3842G>T	ENSMUSP00000133468.1:p.Arg1281Met	H-2-Db	9	9	3	STMVCLQPI	STRVCLQPI	NetMHCpan	182.5	5235.2	28.686	66	0.288	379.307	5485.672	14.462	10034.86	283.75	5235.2	182.5	5736.143402	580.2564812	4961.00883	474.8648239	M3	1.685714286	1.685714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.283	66	0	0	NA	4qC3	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr4	53543568	53543568	T	G	ENSMUST00000102911.9	1	ENSMUSG00000028412	missense	F/V	371	Slc44a1	ENSMUST00000102911.9:c.1111T>G	ENSMUSP00000099975.3:p.Phe371Val	H-2-Db	9	3	9	SAVQNEQGV	SAVQNEQGF	NetMHCpan	285	1199.9	4.21	70	0.314	439.175	1124.262	2.56	1656.13	315.27	1199.9	285	1048.624499	678.6096014	852.2558677	563.0798678	M3	-0.857142857	-0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.35	70	108	36	0.333333333	4qB2	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr4	84973993	84973993	G	A	ENSMUST00000169371.8	5	ENSMUSG00000038070	missense	V/I	372	Cntln	ENSMUST00000169371.8:c.1114G>A	ENSMUSP00000130491.2:p.Val372Ile	H-2-Db	9	3	9	KVLRNQEDI	KVLRNQEDV	SMMPMBEC	215.065	535.266	2.489	29	0.345	275.444	751.813	2.729	1456.12	448.93	812.4	259.4	691.2258958	291.4875433	535.2664216	215.0651295	M3	-1.457142857	-1.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.356	29	8	0	0	4qC4	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr4	53040735	53040735	A	C	ENSMUST00000030010.3	1	ENSMUSG00000015243	missense	F/V	1971	Abca1	ENSMUST00000030010.3:c.5911T>G	ENSMUSP00000030010.3:p.Phe1971Val	H-2-Db	9	9	3	DAVLNKNSI	DAFLNKNSI	SMM	231.004	245.256	1.062	92	0.359	434.531	573.778	1.32	1530.77	624.96	902.3	1359.8	245.2562028	231.0042659	242.4208669	244.1012481	M3	0.114285714	0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.367	92	38	5	0.131578947	4qB2	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr4	113483888	113483888	A	G	ENSMUST00000169631.7	1	ENSMUSG00000078598	missense	Y/H	1419	Skint5	ENSMUST00000169631.7:c.4255T>C	ENSMUSP00000132470.1:p.Tyr1419His	H-2-Kb	8	5	7	ATILYMHL	ATILYMYL	NetMHC	4.93	6.7	1.359	86	0.291	14.773	17.882	1.21	6.7	4.93	15.5	9	20.26469166	21.21973715	21.12224132	20.5466016	M3	1.257142857	1.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.284	86	0	0	NA	4qD1	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr4	115496100	115496100	TA	T	ENSMUST00000030487.2	1	ENSMUSG00000028715	FS	L/X	5	Cyp4a14	ENSMUST00000030487.2:c.14del	ENSMUSP00000030487.2:p.Leu5TyrfsTer60	H-2-Kb	8	1	5	MGFFYLAL	MGFFLFSP	NetMHCpan	5.6	744.4	132.929	30	0.467	8.822	1514.642	171.684	3458.5	11.16	744.4	5.6	1408.445349	8.011982647	1620.839455	9.632521787	M3	1.9	1.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.472	30	0	0	NA	4qD1	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	2	1	sgMsh2	cell line
chr4	115496100	115496100	TA	T	ENSMUST00000030487.2	1	ENSMUSG00000028715	FS	L/X	5	Cyp4a14	ENSMUST00000030487.2:c.14del	ENSMUSP00000030487.2:p.Leu5TyrfsTer60	H-2-Kb	8	48	0	SSISHACL	NA	NetMHC	26.78	NA	NA	30	0.467	42.587	NA	NA	NA	26.78	NA	86	NA	42.04748265	NA	43.12608157	M3	1.114285714	1.114285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.472	30	0	0	NA	4qD1	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	2	1	sgMsh2	cell line
chr4	126832123	126832123	A	G	ENSMUST00000102607.9	1	ENSMUSG00000028830	missense	H/R	442	AU040320	ENSMUST00000102607.9:c.1325A>G	ENSMUSP00000099667.3:p.His442Arg	H-2-Kb	8	8	4	VQYRWEEL	VQYHWEEL	NetMHCpan	39.9	67.7	1.697	75	0.307	60.954	148.184	2.431	150.91	40.11	67.7	39.9	165.4778997	88.66250554	145.4587999	81.79749427	M3	-1.914285714	-1.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.275	75	70	18	0.257142857	4qD2.2	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr4	43507096	43507096	AC	A	ENSMUST00000030183.9	1	ENSMUSG00000028463	FS	T/X	14	Car9	ENSMUST00000030183.9:c.44del	ENSMUSP00000030183.3:p.Pro15GlnfsTer79	H-2-Kb	8	52	0	WAWMFCPV	NA	SMMPMBEC	66.948	NA	NA	15	0.4	103.204	NA	NA	NA	98.08	NA	227.7	NA	108.3278191	NA	66.94836882	M3	1.528571429	1.528571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.438	15	0	0	NA	4qA5	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	2	1	sgMsh2	cell line
chr4	115014223	115014223	A	G	ENSMUST00000030490.12	1	ENSMUSG00000028718	missense	N/S	330	Stil	ENSMUST00000030490.12:c.989A>G	ENSMUSP00000030490.6:p.Asn330Ser	H-2-Kb	8	6	6	TLHLFSNV	TLHLFNNV	NetMHCpan	103.7	224.2	2.162	82	0.354	136.53	304.681	2.232	334.06	109.1	224.2	103.7	326.3923717	201.7158386	282.9697428	163.9607892	M3	1.014285714	1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.342	82	17	4	0.235294118	4qD1	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr4	113483888	113483888	A	G	ENSMUST00000169631.7	1	ENSMUSG00000078598	missense	Y/H	1419	Skint5	ENSMUST00000169631.7:c.4255T>C	ENSMUSP00000132470.1:p.Tyr1419His	H-2-Kb	8	7	5	ILYMHLQI	ILYMYLQI	NetMHCpan	66.5	26.6	0.4	86	0.291	185.475	37.904	0.204	32.88	185.28	26.6	66.5	70.91530907	274.6249558	42.92793522	185.6692572	M3	0.857142857	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.284	86	0	0	NA	4qD1	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr4	74170660	74170660	A	G	ENSMUST00000084474.5	1	ENSMUSG00000049122	missense	S/G	365	Frmd3	ENSMUST00000084474.5:c.1093A>G	ENSMUSP00000081514.5:p.Ser365Gly	H-2-Kb	8	8	4	QSRGFHSL	QSRSFHSL	SMM	150.224	65.274	0.435	53	0.283	214.23	81.245	0.379	42.93	203.17	173.7	465.2	65.27396586	150.2242346	97.21650414	225.2890066	M3	-0.442857143	-0.442857143	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.27	53	0	0	NA	4qC3	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr4	144565004	144565004	A	G	ENSMUST00000105748.1	5	ENSMUSG00000078506	missense	M/T	44	Aadacl4fm2	ENSMUST00000105748.1:c.131T>C	ENSMUSP00000101374.1:p.Met44Thr	H-2-Kb	8	11	1	TLHYFFQL	MLHYFFQL	NetMHCpan	42.3	48.8	1.154	132	0.28	175.549	130.503	0.743	218.44	221.41	48.8	42.3	150.9176382	211.2224132	110.0880046	139.8749679	M3	0.742857143	0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.281	132	0	0	NA	4qE1	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr3	153509458	153509458	T	C	ENSMUST00000200397.4	1	ENSMUSG00000052544	missense	I/V	20	St6galnac3	ENSMUST00000200397.4:c.58A>G	ENSMUSP00000143747.1:p.Ile20Val	H-2-Kb	8	11	1	VLLLAMRL	ILLLAMRL	SMM	221.177	235.907	1.067	89	0.225	239.723	253.353	1.057	302.11	262.11	270.8	238.6	235.9065504	221.1770188	234.8226582	240.8463117	M3	2.057142857	2.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.219	89	0	0	NA	3qH3	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	0.937831185	sgMsh2	cell line
chr4	20064005	20064005	A	C	ENSMUST00000098242.3	1	ENSMUSG00000073987	missense	K/T	234	Ggh	ENSMUST00000098242.3:c.701A>C	ENSMUSP00000095843.3:p.Lys234Thr	H-2-Kb	8	10	2	FTYPVYAV	FKYPVYAV	SMM	232.135	1272.741	5.483	70	0.371	311.21	3820.621	12.277	5414.14	319.82	5562.8	302.6	1272.740898	232.1346655	2227.101447	387.9180607	M3	0.757142857	0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.38	70	100	33	0.33	4qA3	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr3	153509458	153509458	T	C	ENSMUST00000200397.4	1	ENSMUSG00000052544	missense	I/V	20	St6galnac3	ENSMUST00000200397.4:c.58A>G	ENSMUSP00000143747.1:p.Ile20Val	H-2-Kb	8	4	8	VSFIALCV	VSFIALCI	SMM	205.94	373.887	1.816	89	0.225	246.911	373.028	1.511	640.38	398.71	236.9	259	373.8866857	205.9396641	372.1688324	234.8226582	M3	2.685714286	2.685714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.219	89	0	0	NA	3qH3	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	0.937831185	sgMsh2	cell line
chr4	149469049	149469049	T	C	ENSMUST00000105693.1	1	ENSMUSG00000028992	missense	D/G	202	Nmnat1	ENSMUST00000105693.1:c.605A>G	ENSMUSP00000101318.1:p.Asp202Gly	H-2-Kb	8	6	6	FIYESGVL	FIYESDVL	SMM	209.768	492.879	2.35	76	0.289	400.327	1446.197	3.613	2225.22	505.71	2076.3	573.6	492.8786429	209.7683683	816.0936526	294.9442949	M3	0.928571429	0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.307	76	28	12	0.428571429	4qE2	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr4	144564983	144564983	A	G	ENSMUST00000105748.1	5	ENSMUSG00000078506	missense	L/P	51	Aadacl4fm2	ENSMUST00000105748.1:c.152T>C	ENSMUSP00000101374.1:p.Leu51Pro	H-2-Kb	8	5	7	LHYFFQPT	LHYFFQLT	NetMHCpan	236.5	344.9	1.458	135	0.363	357.167	962.247	2.694	1565.05	531.16	344.9	236.5	1075.820957	406.2000757	848.6722465	308.1342684	M3	-0.671428571	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.359	135	0	0	NA	4qE1	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr4	148087939	148087939	T	A	ENSMUST00000030865.8	1	ENSMUSG00000029007	missense	E/V	2	Agtrap	ENSMUST00000030865.8:c.5A>T	ENSMUSP00000030865.8:p.Glu2Val	H-2-Kb	8	1	2	MVLPAVNL	MELPAVNL	SMM	313.863	1583.945	5.047	9	0.222	376.958	6234.554	16.539	13905.31	610.01	10327.5	331.5	1583.944645	313.8629122	2141.608096	422.4156501	M3	1.814285714	1.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe	2	0.304	9	31	8	0.258064516	4qE2	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr4	113483888	113483888	A	G	ENSMUST00000169631.7	1	ENSMUSG00000078598	missense	Y/H	1419	Skint5	ENSMUST00000169631.7:c.4255T>C	ENSMUSP00000132470.1:p.Tyr1419His	H-2-Kb	9	4	8	SATILYMHL	SATILYMYL	NetMHC	30.45	50.44	1.656	86	0.291	128.412	152.174	1.185	50.44	30.45	94.4	55.4	209.947158	201.4234359	235.640535	215.4021332	M3	1.257142857	1.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.284	86	0	0	NA	4qD1	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr4	103143160	103143160	A	C	ENSMUST00000097945.9	1	ENSMUSG00000028522	missense	Q/H	233	Mier1	ENSMUST00000097945.9:c.699A>C	ENSMUSP00000095558.3:p.Gln233His	H-2-Kb	9	6	6	VGSMFHAEI	VGSMFQAEI	NetMHCpan	56.9	188.7	3.316	67	0.358	337.801	674.731	1.997	301.73	83.7	188.7	56.9	1210.904798	785.4345477	1047.731497	591.9022625	M3	0.5	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.392	67	63	17	0.26984127	4qC6	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr3	153509458	153509458	T	C	ENSMUST00000200397.4	1	ENSMUSG00000052544	missense	I/V	20	St6galnac3	ENSMUST00000200397.4:c.58A>G	ENSMUSP00000143747.1:p.Ile20Val	H-2-Kb	9	4	8	VSFIALCVL	VSFIALCIL	NetMHCpan	76.8	80.4	1.047	89	0.225	115.737	102.269	0.884	98.83	105.84	80.4	76.8	105.7085218	125.6348137	138.4363053	134.9739632	M3	3.342857143	3.342857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.219	89	0	0	NA	3qH3	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	0.937831185	sgMsh2	cell line
chr4	118734571	118734571	A	G	ENSMUST00000217522.2	3	ENSMUSG00000070820	missense	E/G	14	Olfr1339	ENSMUST00000217522.2:c.41A>G	ENSMUSP00000148988.1:p.Glu14Gly	H-2-Kb	9	7	5	SSVSGFILL	SSVSEFILL	NetMHC	114.79	78.01	0.68	84	0.321	211.811	154.118	0.728	78.01	114.79	132.4	180.9	175.8368925	242.7224795	277.4917016	308.4963287	M3	2.557142857	2.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.3	84	0	0	NA	4qD2.1	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr4	144565004	144565004	A	G	ENSMUST00000105748.1	5	ENSMUSG00000078506	missense	M/T	44	Aadacl4fm2	ENSMUST00000105748.1:c.131T>C	ENSMUSP00000101374.1:p.Met44Thr	H-2-Kb	9	10	2	HTLHYFFQL	HMLHYFFQL	NetMHCpan	47	60.3	1.283	132	0.28	134.804	68.981	0.512	115.84	115.35	60.3	47	70.00192775	185.8275068	67.95947262	154.2588183	M3	0.742857143	0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.281	132	0	0	NA	4qE1	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr4	144564983	144564983	A	G	ENSMUST00000105748.1	5	ENSMUSG00000078506	missense	L/P	51	Aadacl4fm2	ENSMUST00000105748.1:c.152T>C	ENSMUSP00000101374.1:p.Leu51Pro	H-2-Kb	9	5	7	LHYFFQPTI	LHYFFQLTI	NetMHCpan	56.9	58	1.019	135	0.363	189.744	275.225	1.451	289.32	151.92	58	56.9	273.5961615	227.567375	276.8534884	237.82089	M3	0.428571429	0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.359	135	0	0	NA	4qE1	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr4	126832123	126832123	A	G	ENSMUST00000102607.9	1	ENSMUSG00000028830	missense	H/R	442	AU040320	ENSMUST00000102607.9:c.1325A>G	ENSMUSP00000099667.3:p.His442Arg	H-2-Kb	9	7	5	IVQYRWEEL	IVQYHWEEL	NetMHC	174.25	167.19	0.959	75	0.307	278.449	296.503	1.065	167.19	174.25	354.2	445.8	308.3968972	297.9270937	284.6098982	258.9703239	M3	-1.914285714	-0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.275	75	70	18	0.257142857	4qD2.2	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr4	103143160	103143160	A	C	ENSMUST00000097945.9	1	ENSMUSG00000028522	missense	Q/H	233	Mier1	ENSMUST00000097945.9:c.699A>C	ENSMUSP00000095558.3:p.Gln233His	H-2-Kb	9	8	4	SMFHAEIPV	SMFQAEIPV	SMM	181.18	218.328	1.205	67	0.358	241.915	277.522	1.147	236.44	216.99	363	335.2	218.3282833	181.1798935	318.6031021	266.8394274	M3	0.714285714	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.392	67	63	17	0.26984127	4qC6	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr4	43507096	43507096	AC	A	ENSMUST00000030183.9	1	ENSMUSG00000028463	FS	T/X	14	Car9	ENSMUST00000030183.9:c.44del	ENSMUSP00000030183.3:p.Pro15GlnfsTer79	H-2-Kb	9	51	0	SWAWMFCPV	NA	SMM	131.556	NA	NA	15	0.4	249.521	NA	NA	NA	247.13	NA	306.6	NA	131.5558	NA	251.9126636	M3	1.528571429	1.528571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.438	15	0	0	NA	4qA5	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	2	1	sgMsh2	cell line
chr4	113004506	113004506	A	G	ENSMUST00000138966.8	1	ENSMUSG00000087194	missense	M/T	618	Skint6	ENSMUST00000138966.8:c.1853T>C	ENSMUSP00000121870.2:p.Met618Thr	H-2-Kb	9	10	2	STLLKKIGL	SMLLKKIGL	NetMHC	344.11	192.99	0.561	158	0.323	450.184	204.444	0.454	192.99	344.11	587.9	803.6	154.5645878	410.3080144	215.8986864	490.0608399	M3	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.334	158	0	0	NA	4qD1	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr4	32725960	32725960	CA	C	ENSMUST00000178134.1	5	ENSMUSG00000058006	FS	A/X	2626	Mdn1	ENSMUST00000178134.1:c.7880del	ENSMUSP00000136222.1:p.Asn2627ThrfsTer27	H-2-Kb	9	10	3	VATRHLFIL	NA	SMM	230.202	NA	NA	110	0.3	308.995	NA	NA	NA	418.19	NA	322.7	NA	230.202481	NA	295.2908568	M3	0.928571429	0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.312	110	17	0	0	4qA5	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr4	46007511	46007511	A	C	ENSMUST00000107777.8	1	ENSMUSG00000035517	missense	E/A	521	Tdrd7	ENSMUST00000107777.8:c.1562A>C	ENSMUSP00000103406.2:p.Glu521Ala	H-2-Kb	9	11	1	AFYSKNPRV	EFYSKNPRV	SMM	292.489	1023.552	3.499	102	0.431	429.847	2150.851	5.004	3217.15	519.09	7027.5	1153.4	1023.552209	292.4893114	1084.551052	340.6042008	M3	-1.628571429	-0.928571429	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.437	102	24	7	0.291666667	4qB1	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	2	1	sgMsh2	cell line
chr5	41820669	41820669	CT	C	ENSMUST00000050556.10	5	ENSMUSG00000061755	FS	S/X	1101	Bod1l	ENSMUST00000050556.10:c.3301del	ENSMUSP00000058618.7:p.Ser1101AlafsTer57	H-2-Db	9	55	0	KMLQNIKPL	NA	NetMHC	31.78	NA	NA	202	0.228	50.478	NA	NA	NA	31.78	NA	48.4	NA	52.55572119	NA	58.69079604	M3	-0.057142857	-0.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.231	202	50	5	0.1	5qB3	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.989219195	sgMsh2	cell line
chr5	24477100	24477100	T	C	ENSMUST00000024123.8	1	ENSMUSG00000023353	missense	V/A	198	Agap3	ENSMUST00000024123.8:c.593T>C	ENSMUSP00000024123.4:p.Val198Ala	H-2-Db	9	10	2	FAFSLEDEI	FVFSLEDEI	NetMHC	85.78	1256.91	14.653	152	0.211	123.544	1036.389	8.389	1256.91	85.78	1654.5	193.2	815.8681887	127.5322436	763.0798752	119.5556211	M3	-0.028571429	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.211	152	62	21	0.338709677	5qA3	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.903572512	sgMsh2	cell line
chr5	3571771	3571771	GA	G	ENSMUST00000008451.11	1	ENSMUSG00000008307	FS	K/X	7	1700109H08Rik	ENSMUST00000008451.11:c.25del	ENSMUSP00000008451.5:p.Met9TrpfsTer55	H-2-Db	9	31	0	FSIAWWDAL	NA	NetMHC	161.39	NA	NA	92	0.283	162.322	NA	NA	NA	161.39	NA	161.5	NA	195.7131469	NA	163.1435844	M3	0.942857143	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.303	92	0	0	NA	5qA1	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr5	63806698	63806698	A	T	ENSMUST00000159584.2	1	ENSMUSG00000090061	missense	K/N	1208	Nwd2	ENSMUST00000159584.2:c.3624A>T	ENSMUSP00000124712.1:p.Lys1208Asn	H-2-Db	9	7	5	ILICNALSI	ILICKALSI	NetMHCpan	141.1	7481.9	53.026	178	0.236	238.859	9795.44	41.009	18580.86	208.18	7481.9	141.1	8762.337965	269.537999	10828.54237	322.5299134	M3	1.828571429	2.485714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.242	178	0	0	NA	5qC3.1	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr5	3571771	3571771	GA	G	ENSMUST00000008451.11	1	ENSMUSG00000008307	FS	K/X	7	1700109H08Rik	ENSMUST00000008451.11:c.25del	ENSMUSP00000008451.5:p.Met9TrpfsTer55	H-2-Kb	8	27	0	VSYDFSIA	NA	NetMHC	23.52	NA	NA	92	0.283	51.845	NA	NA	NA	23.52	NA	28.4	NA	75.29046857	NA	87.24489012	M3	0.385714286	0.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.303	92	0	0	NA	5qA1	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr5	83294647	83294647	A	G	ENSMUST00000053543.10	1	ENSMUSG00000049537	missense	I/T	193	Tecrl	ENSMUST00000053543.10:c.578T>C	ENSMUSP00000062122.4:p.Ile193Thr	H-2-Kb	8	8	4	IHYTRLLL	IHYIRLLL	NetMHCpan	57.4	46.9	0.817	76	0.145	167.5	176.014	1.051	96.91	95.26	46.9	57.4	255.1173529	239.7397234	272.1071791	245.8895091	M3	0.242857143	0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.149	76	0	0	NA	5qE1	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.638067793	sgMsh2	cell line
chr5	105606595	105606595	A	G	ENSMUST00000067924.12	1	ENSMUSG00000054720	missense	T/A	79	Lrrc8c	ENSMUST00000067924.12:c.235A>G	ENSMUSP00000066015.6:p.Thr79Ala	H-2-Kb	8	6	6	AVISTAPL	AVISTTPL	NetMHC	116.95	543.07	4.644	104	0.567	194.861	538.657	2.764	543.07	116.95	441.1	206.6	712.4263926	249.310173	534.2444264	183.1217795	M3	1.6	1.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.552	104	150	83	0.553333333	5qE5	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	2	1	sgMsh2	cell line
chr5	3571771	3571771	GA	G	ENSMUST00000008451.11	1	ENSMUSG00000008307	FS	K/X	7	1700109H08Rik	ENSMUST00000008451.11:c.25del	ENSMUSP00000008451.5:p.Met9TrpfsTer55	H-2-Kb	8	33	0	IAWWDALL	NA	NetMHC	126.14	NA	NA	92	0.283	143.498	NA	NA	NA	126.14	NA	200.3	NA	160.597951	NA	126.3979412	M3	0.842857143	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.303	92	0	0	NA	5qA1	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr5	24477100	24477100	T	C	ENSMUST00000024123.8	1	ENSMUSG00000023353	missense	V/A	198	Agap3	ENSMUST00000024123.8:c.593T>C	ENSMUSP00000024123.4:p.Val198Ala	H-2-Kb	8	8	4	VVFAFSLE	VVFVFSLE	SMM	34.494	33.093	0.959	152	0.211	112.342	92.342	0.822	150.11	183.97	512.5	437.1	33.09329418	34.49371732	34.57323355	40.71364636	M3	1.585714286	2.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.211	152	62	21	0.338709677	5qA3	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.903572512	sgMsh2	cell line
chr5	57720612	57720612	T	C	ENSMUST00000191837.5	1	ENSMUSG00000029108	missense	V/A	503	Pcdh7	ENSMUST00000191837.5:c.1508T>C	ENSMUSP00000142319.1:p.Val503Ala	H-2-Kb	8	5	7	TTREFNAV	TTREFNVV	SMM	170.506	401.55	2.355	136	0.25	273.109	916.574	3.356	1915.54	307.03	1295.2	590.7	401.5503419	170.5061311	537.9476318	239.1883374	M3	-0.485714286	-0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.259	136	22	0	0	5qC1	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr5	120524323	120524323	A	G	ENSMUST00000068326.13	1	ENSMUSG00000032754	missense	K/E	328	Slc8b1	ENSMUST00000068326.13:c.982A>G	ENSMUSP00000064714.7:p.Lys328Glu	H-2-Kb	8	5	7	ISWRVLEV	ISWRVLKV	NetMHCpan	233.9	238.6	1.02	84	0.19	347.104	258.844	0.746	365.25	414.36	238.6	233.9	279.0872523	367.0624846	225.8083514	327.1447838	M3	0.357142857	0.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.215	84	31	7	0.225806452	5qF	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.920701848	sgMsh2	cell line
chr4	153386480	153386480	A	G	ENSMUST00000105646.2	5	ENSMUSG00000039546	missense	V/A	290	Ajap1	ENSMUST00000105646.2:c.869T>C	ENSMUSP00000101271.1:p.Val290Ala	H-2-Kb	8	6	6	IITITASL	IITITVSL	SMMPMBEC	287.568	829.354	2.884	111	0.333	381.064	1094.846	2.873	2140.69	471.23	1348.8	604.6	840.8915726	290.8975074	829.3541077	287.5676312	M3	1.771428571	1.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.351	111	0	0	NA	4qE2	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr5	87694728	87694728	C	T	ENSMUST00000197422.4	1	ENSMUSG00000063157	missense	A/T	147	Csn2	ENSMUST00000197422.4:c.439G>A	ENSMUSP00000143341.1:p.Ala147Thr	H-2-Kb	8	9	3	SLTSLANL	SLASLANL	SMM	381.716	341.775	0.895	153	0.275	487.6	375.638	0.77	720.32	664.91	348.8	569	341.7747702	381.7156799	402.476011	406.2000757	M3	1.171428571	1.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.282	153	0	0	NA	5qE1	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr5	41820669	41820669	CT	C	ENSMUST00000050556.10	5	ENSMUSG00000061755	FS	S/X	1101	Bod1l	ENSMUST00000050556.10:c.3301del	ENSMUSP00000058618.7:p.Ser1101AlafsTer57	H-2-Kb	8	33	0	MCLNFLKL	NA	SMMPMBEC	213.668	NA	NA	202	0.228	284.779	NA	NA	NA	791.96	NA	294.3	NA	275.2580317	NA	213.6682534	M3	1.328571429	1.328571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.231	202	50	5	0.1	5qB3	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.989219195	sgMsh2	cell line
chr5	7305531	7305531	A	G	ENSMUST00000160634.1	1	ENSMUSG00000040514	missense	I/M	237	Tex47	ENSMUST00000160634.1:c.711A>G	ENSMUSP00000125471.1:p.Ile237Met	H-2-Kb	9	5	7	SMYNRPMHV	SMYNRPIHV	NetMHC	28.77	50.37	1.751	124	0.202	80.74	83.218	1.031	50.37	28.77	129.5	87.5	76.22720572	73.97926292	90.20902731	91.04372116	M3	-1.142857143	-1.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.199	124	0	0	NA	5qA1	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.852184501	sgMsh2	cell line
chr5	3571771	3571771	GA	G	ENSMUST00000008451.11	1	ENSMUSG00000008307	FS	K/X	7	1700109H08Rik	ENSMUST00000008451.11:c.25del	ENSMUSP00000008451.5:p.Met9TrpfsTer55	H-2-Kb	9	27	0	VSYDFSIAW	NA	NetMHC	37.79	NA	NA	92	0.283	103.487	NA	NA	NA	37.79	NA	151.3	NA	106.6866308	NA	100.2882377	M3	0.371428571	0.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.303	92	0	0	NA	5qA1	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr5	61809673	61809673	C	T	ENSMUST00000053876.4	NA	ENSMUSG00000089992	missense	L/F	264	G6pd2	ENSMUST00000053876.4:c.790C>T	ENSMUSP00000131163.1:p.Leu264Phe	H-2-Kb	9	6	6	VMQSHFLQM	VMQSHLLQM	NetMHCpan	46.2	211.1	4.569	221	0.154	50.769	134.096	2.641	139.59	55.37	211.1	46.2	103.7791239	46.67775928	128.6026743	54.85926694	M3	-0.357142857	0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.163	221	5	0	0	5qC3.1	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.698020471	sgMsh2	cell line
chr5	69559600	69559600	G	T	ENSMUST00000087228.10	1	ENSMUSG00000029208	missense	Q/H	168	Guf1	ENSMUST00000087228.10:c.504G>T	ENSMUSP00000084480.4:p.Gln168His	H-2-Kb	9	4	8	FFLAFEAHL	FFLAFEAQL	NetMHC	82.2	123.13	1.498	221	0.262	229.444	263.489	1.148	123.13	82.2	352.8	236.5	268.6024688	222.3873092	258.3747087	273.6843727	M3	1.042857143	1.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.261	221	30	11	0.366666667	5qC3.1	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr5	104968246	104968246	A	G	ENSMUST00000031239.12	1	ENSMUSG00000029299	missense	S/P	241	Abcg3	ENSMUST00000031239.12:c.721T>C	ENSMUSP00000031239.6:p.Ser241Pro	H-2-Kb	9	11	1	PIFKFFDSL	SIFKFFDSL	SMM	90.805	37.507	0.413	141	0.163	108.309	21.983	0.203	6.46	139.94	5	106.4	37.50679891	90.8050496	43.17675507	110.2173589	M3	0.571428571	0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.165	141	0	0	NA	5qE5	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.706585139	sgMsh2	cell line
chr5	3571771	3571771	GA	G	ENSMUST00000008451.11	1	ENSMUSG00000008307	FS	K/X	7	1700109H08Rik	ENSMUST00000008451.11:c.25del	ENSMUSP00000008451.5:p.Met9TrpfsTer55	H-2-Kb	9	31	0	FSIAWWDAL	NA	NetMHC	179.9	NA	NA	92	0.283	294.902	NA	NA	NA	179.9	NA	271.2	NA	375.9326101	NA	318.6031021	M3	0.942857143	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.303	92	0	0	NA	5qA1	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr5	83294647	83294647	A	G	ENSMUST00000053543.10	1	ENSMUSG00000049537	missense	I/T	193	Tecrl	ENSMUST00000053543.10:c.578T>C	ENSMUSP00000062122.4:p.Ile193Thr	H-2-Kb	9	5	7	CHCIHYTRL	CHCIHYIRL	NetMHC	205.21	311.25	1.517	76	0.145	244.76	304.589	1.244	311.25	205.21	675.9	458.8	297.9270937	281.9096874	228.165512	207.6108278	M3	0.157142857	0.157142857	TRUE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.149	76	0	0	NA	5qE1	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.638067793	sgMsh2	cell line
chr5	3571771	3571771	GA	G	ENSMUST00000008451.11	1	ENSMUSG00000008307	FS	K/X	7	1700109H08Rik	ENSMUST00000008451.11:c.25del	ENSMUSP00000008451.5:p.Met9TrpfsTer55	H-2-Kb	9	32	0	SIAWWDALL	NA	NetMHC	227.13	NA	NA	92	0.283	356.707	NA	NA	NA	227.13	NA	500	NA	321.4474612	NA	391.9674468	M3	0.842857143	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.303	92	0	0	NA	5qA1	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr5	90606874	90606874	A	G	ENSMUST00000031317.9	5	ENSMUSG00000029370	missense	S/P	195	Rassf6	ENSMUST00000031317.9:c.583T>C	ENSMUSP00000031317.6:p.Ser195Pro	H-2-Kb	9	4	8	HVYDHETPI	HVYDHETSI	SMM	221.876	386.465	1.742	136	0.287	421.609	748.334	1.775	1303.8	592.79	1059.9	587.8	386.4648502	221.8758325	436.7671833	255.4171179	M3	-1.328571429	-1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.299	136	68	17	0.25	5qE1	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr6	57600007	57600007	T	C	ENSMUST00000031817.9	1	ENSMUSG00000029798	missense	L/P	235	Herc6	ENSMUST00000031817.9:c.704T>C	ENSMUSP00000031817.8:p.Leu235Pro	H-2-Db	9	6	6	GALKNPSVI	GALKNLSVI	NetMHC	13.46	7.99	0.594	153	0.196	47.099	27.26	0.579	7.99	13.46	16.8	37.5	48.2636319	70.24574131	37.71985373	56.6982951	M3	0.385714286	0.385714286	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.189	153	14	2	0.142857143	6qB3	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.80936116	sgMsh2	cell line
chr6	57432499	57432499	A	T	ENSMUST00000227909.1	NA	ENSMUSG00000115253	missense	Y/F	270	Vmn1r20	ENSMUST00000227909.1:c.809A>T	ENSMUSP00000153815.1:p.Tyr270Phe	H-2-Db	9	11	1	FAYPTISPL	YAYPTISPL	NetMHCpan	195.9	160.5	0.819	219	0.114	491.745	460.71	0.937	318.07	309.63	160.5	195.9	617.4758832	712.2295691	603.3509488	673.8605002	M3	0.328571429	0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe	3	0.123	219	0	0	NA	6qB3	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.526727104	sgMsh2	cell line
chr6	42896714	42896714	GA	G	ENSMUST00000213952.2	5	ENSMUSG00000043119	FS	K/X	88	Olfr448	ENSMUST00000213952.2:c.267del	ENSMUSP00000150419.1:p.Lys89AsnfsTer9	H-2-Db	9	8	5	LAKKNLFLL	NA	SMMPMBEC	392.256	NA	NA	275	0.175	484.517	NA	NA	NA	1373.15	NA	532.9	NA	436.1340556	NA	392.2563655	M3	0.414285714	0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.173	275	0	0	NA	6qB2.1	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.740843813	sgMsh2	cell line
chr5	127604164	127604164	T	G	ENSMUST00000031367.14	1	ENSMUSG00000029416	missense	S/R	347	Slc15a4	ENSMUST00000031367.14:c.1039A>C	ENSMUSP00000031367.8:p.Ser347Arg	H-2-Kb	8	5	7	TTYALQRL	TTYALQSL	NetMHC	18.7	32.38	1.732	132	0.174	27.243	45.615	1.674	32.38	18.7	26.6	20.7	58.84912366	33.78625068	71.57148034	39.78689062	M3	-0.085714286	-0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.185	132	50	8	0.16	5qG1.2	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.792231823	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	8	4	8	VLVSYTRL	VLVSYTRI	NetMHC	19.39	171.38	8.839	152	0.125	31.763	209.772	6.604	171.38	19.39	99.5	20.3	348.1288376	53.67103866	248.1646968	43.22549746	M3	0.642857143	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.139	152	0	0	NA	6qB2.1	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.595244451	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	8	6	6	VSYTRLLV	VSYTRILV	NetMHCpan	35.2	39.9	1.134	152	0.125	94.957	84.621	0.891	32.04	39.69	39.9	35.2	129.3421274	150.2242346	135.1263357	158.7596015	M3	0.642857143	0.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.139	152	0	0	NA	6qB2.1	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.595244451	sgMsh2	cell line
chr5	151561858	151561858	T	C	ENSMUST00000165928.3	5	ENSMUSG00000091794	missense	S/G	724	Vmn2r18	ENSMUST00000165928.3:c.2170A>G	ENSMUSP00000127506.1:p.Ser724Gly	H-2-Kb	8	5	7	SMVVFCGV	SMVVFCSV	NetMHC	46.03	69.18	1.503	214	0.168	157.77	147.604	0.936	69.18	46.03	69.4	98.4	230.0064421	222.1979255	225.8083514	217.1400833	M3	2.771428571	2.771428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.182	214	0	0	NA	5qG3	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.77938482	sgMsh2	cell line
chr5	135911218	135911218	GC	G	ENSMUST00000055808.5	1	ENSMUSG00000051391	FS	G/X	174	Ywhag	ENSMUST00000055808.5:c.521del	ENSMUSP00000051223.5:p.Gly174AlafsTer38	H-2-Kb	8	14	0	STTRFSTM	NA	NetMHC	50.97	NA	NA	69	0.275	122.847	NA	NA	NA	50.97	NA	87.3	NA	158.3944645	NA	187.8192059	M3	-0.385714286	-0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.294	69	401	33	0.082294264	5qG2	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr6	57432499	57432499	A	T	ENSMUST00000227909.1	NA	ENSMUSG00000115253	missense	Y/F	270	Vmn1r20	ENSMUST00000227909.1:c.809A>T	ENSMUSP00000153815.1:p.Tyr270Phe	H-2-Kb	8	9	3	LMFAYPTI	LMYAYPTI	NetMHCpan	23.5	18.4	0.783	219	0.114	117.837	79.517	0.675	27.59	68.28	18.4	23.5	140.5206015	189.5570756	131.4437679	167.3940435	M3	1.057142857	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe	3	0.123	219	0	0	NA	6qB3	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.526727104	sgMsh2	cell line
chr6	57210453	57210453	T	C	ENSMUST00000227421.1	NA	ENSMUSG00000064259	missense	M/T	199	Vmn1r13	ENSMUST00000227421.1:c.596T>C	ENSMUSP00000154429.1:p.Met199Thr	H-2-Kb	8	8	4	SAYTVIIL	SAYMVIIL	NetMHC	115.95	94.02	0.811	402	0.124	153.083	167.312	1.093	94.02	115.95	126.3	126.8	208.324333	179.3659491	261.6616044	268.9923939	M3	2.4	2.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.132	402	0	0	NA	6qB3	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.565268112	sgMsh2	cell line
chr6	35270381	35270381	A	G	ENSMUST00000031868.4	1	ENSMUSG00000029843	missense	I/T	568	Slc13a4	ENSMUST00000031868.4:c.1703T>C	ENSMUSP00000031868.4:p.Ile568Thr	H-2-Kb	8	11	1	TVFSYGHC	IVFSYGHC	SMMPMBEC	126.398	45.787	0.362	133	0.203	145.752	48.403	0.332	38.66	171.24	51.8	148.7	51.01994663	142.8038776	45.7867692	126.3979412	M3	0.542857143	0.542857143	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.202	133	0	0	NA	6qB1	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.865031504	sgMsh2	cell line
chr5	150662367	150662367	GT	G	ENSMUST00000118316.7	5	ENSMUSG00000029655	FS	K/X	49	N4bp2l2	ENSMUST00000118316.7:c.147del	ENSMUSP00000113895.1:p.Lys49AsnfsTer30	H-2-Kb	8	15	0	IGSRWPPL	NA	NetMHC	178.15	NA	NA	161	0.342	200.455	NA	NA	NA	178.15	NA	220.3	NA	222.7101447	NA	180.6092545	M3	-0.857142857	-0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.349	161	167	38	0.22754491	5qG3	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	2	1	sgMsh2	cell line
chr6	30815960	30815960	A	G	ENSMUST00000048774.12	1	ENSMUSG00000025607	missense	V/A	480	Copg2	ENSMUST00000048774.12:c.1439T>C	ENSMUSP00000038368.6:p.Val480Ala	H-2-Kb	8	6	6	FIFNRAVL	FIFNRVVL	SMM	138.912	401.55	2.891	106	0.142	159.887	404.813	2.532	524.31	178.28	359.2	181.6	401.5503419	138.9120754	408.0750101	141.4946437	M3	1.3	1.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.148	106	88	19	0.215909091	6qA3.3	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.633785458	sgMsh2	cell line
chr6	18405230	18405230	T	C	ENSMUST00000090601.11	1	ENSMUSG00000000416	missense	Y/C	1090	Cttnbp2	ENSMUST00000090601.11:c.3269A>G	ENSMUSP00000088089.5:p.Tyr1090Cys	H-2-Kb	8	7	5	SSVTCASM	SSVTYASM	NetMHC	276.55	6.31	0.023	294	0.146	362.299	24.523	0.068	6.31	276.55	15.8	475.5	35.70590129	399.7053856	33.24604589	324.8927349	M3	1.157142857	1.157142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.151	294	1	0	0	6qA2	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.646632461	sgMsh2	cell line
chr6	69283934	69283934	TA	T	ENSMUST00000103349.1	NA	ENSMUSG00000076548	FS	Y/X	70	Igkv4-69	ENSMUST00000103349.1:c.208del	ENSMUSP00000100150.1:p.Tyr70MetfsTer26	H-2-Kb	8	25	0	VAVGLGPL	NA	NetMHC	277.12	NA	NA	448	0.154	319.498	NA	NA	NA	277.12	NA	307.3	NA	344.9371732	NA	331.6958211	M3	1.6	1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.149	448	0	0	NA	6qC1	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.638067793	sgMsh2	cell line
chr5	123998901	123998901	A	C	ENSMUST00000000939.14	1	ENSMUSG00000000915	missense	D/A	644	Hip1r	ENSMUST00000000939.14:c.1931A>C	ENSMUSP00000000939.8:p.Asp644Ala	H-2-Kb	8	6	6	VSKLDAPL	VSKLDDPL	SMMPMBEC	117.961	952.226	8.072	27	0.222	298.242	3760.799	12.61	6496.56	448.32	6794	857.5	1025.038081	148.1630809	952.2259222	117.9614222	M3	-0.057142857	3.17E-17	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.225	27	8	3	0.375	5qF	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.96352519	sgMsh2	cell line
chr6	72515320	72515320	A	G	ENSMUST00000162561.8	1	ENSMUSG00000052631	missense	V/A	181	Sh2d6	ENSMUST00000162561.8:c.542T>C	ENSMUSP00000124673.2:p.Val181Ala	H-2-Kb	8	5	7	QPFTLAAL	QPFTLAVL	SMM	136.691	321.914	2.355	71	0.183	392.013	1659.23	4.233	2868.95	584.16	4165.5	2841.1	321.9141004	136.691025	449.5106648	199.8664966	M3	1.671428571	1.671428571	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.191	71	0	0	NA	6qC1	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.817925828	sgMsh2	cell line
chr6	30815960	30815960	A	G	ENSMUST00000048774.12	1	ENSMUSG00000025607	missense	V/A	480	Copg2	ENSMUST00000048774.12:c.1439T>C	ENSMUSP00000038368.6:p.Val480Ala	H-2-Kb	8	4	8	IRFIFNRA	IRFIFNRV	SMMPMBEC	232.135	48.277	0.208	106	0.142	482.306	47.673	0.099	40.71	683.59	149.1	1240.7	47.06954498	281.0217928	48.27696948	232.1346655	M3	-0.085714286	0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.148	106	88	19	0.215909091	6qA3.3	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.633785458	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	9	3	9	LVLVSYTRL	LVLVSYTRI	NetMHC	46.33	202.94	4.38	152	0.125	99.281	285.444	2.875	202.94	46.33	207.6	48.9	371.6293451	149.6614677	363.2871195	157.1267038	M3	0.642857143	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.139	152	0	0	NA	6qB2.1	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.595244451	sgMsh2	cell line
chr6	57432499	57432499	A	T	ENSMUST00000227909.1	NA	ENSMUSG00000115253	missense	Y/F	270	Vmn1r20	ENSMUST00000227909.1:c.809A>T	ENSMUSP00000153815.1:p.Tyr270Phe	H-2-Kb	9	11	1	FAYPTISPL	YAYPTISPL	NetMHC	61.59	61.61	1	219	0.114	103.321	112.661	1.09	61.61	61.59	63.1	64.7	162.2220929	141.9416992	246.1784313	216.8952295	M3	0.328571429	0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe	3	0.123	219	0	0	NA	6qB3	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.526727104	sgMsh2	cell line
chr5	129595427	129595427	T	G	ENSMUST00000031390.9	1	ENSMUSG00000029436	missense	S/A	148	Mmp17	ENSMUST00000031390.9:c.442T>G	ENSMUSP00000031390.8:p.Ser148Ala	H-2-Kb	9	5	7	RTFPRDAPL	RTFPRDSPL	NetMHC	69.85	178.55	2.556	104	0.231	126.8	193.56	1.527	178.55	69.85	126.7	77.3	219.8416627	205.1681772	208.5691158	176.2990613	M3	-0.4	-0.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.24	104	0	0	NA	5qG1.3	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr5	150662367	150662367	GT	G	ENSMUST00000118316.7	5	ENSMUSG00000029655	FS	K/X	49	N4bp2l2	ENSMUST00000118316.7:c.147del	ENSMUSP00000113895.1:p.Lys49AsnfsTer30	H-2-Kb	9	14	0	IIGSRWPPL	NA	SMMPMBEC	70.186	NA	NA	161	0.342	71.886	NA	NA	NA	72.14	NA	246.2	NA	71.63248211	NA	70.18592048	M3	-0.857142857	0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.349	161	167	38	0.22754491	5qG3	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	2	1	sgMsh2	cell line
chr5	129162644	129162644	T	C	ENSMUST00000056617.13	1	ENSMUSG00000044017	missense	L/P	537	Adgrd1	ENSMUST00000056617.13:c.1610T>C	ENSMUSP00000060307.7:p.Leu537Pro	H-2-Kb	9	8	4	RLFPYCAFL	RLFLYCAFL	NetMHCpan	37.7	76.9	2.04	179	0.24	384.282	244.224	0.636	85.5	107.49	76.9	37.7	494.435904	831.9744705	402.9489236	661.0738832	M3	1.542857143	1.542857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.252	179	0	0	NA	5qG1.3	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr6	56730679	56730679	A	C	ENSMUST00000031805.10	1	ENSMUSG00000029787	missense	K/T	203	Avl9	ENSMUST00000031805.10:c.608A>C	ENSMUSP00000031805.8:p.Lys203Thr	H-2-Kb	9	11	1	TVLFYISPV	KVLFYISPV	NetMHCpan	77.4	99.7	1.288	114	0.14	167.906	288.749	1.72	213.49	126.28	99.7	77.4	364.0072218	239.9440583	370.0411313	209.5318271	M3	1.657142857	1.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.156	114	95	5	0.052631579	6qB3	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.668044132	sgMsh2	cell line
chr5	135911218	135911218	GC	G	ENSMUST00000055808.5	1	ENSMUSG00000051391	FS	G/X	174	Ywhag	ENSMUST00000055808.5:c.521del	ENSMUSP00000051223.5:p.Gly174AlafsTer38	H-2-Kb	9	13	0	RSTTRFSTM	NA	NetMHC	134.8	NA	NA	69	0.275	291.462	NA	NA	NA	134.8	NA	218.8	NA	382.9217191	NA	364.1245828	M3	-0.385714286	-0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.294	69	401	33	0.082294264	5qG2	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	9	4	8	VLVSYTRLL	VLVSYTRIL	NetMHCpan	118.1	254.3	2.153	152	0.125	338.726	712.479	2.103	683.46	204.18	254.3	118.1	741.4980274	473.271116	959.9530659	622.6586131	M3	0.642857143	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.139	152	0	0	NA	6qB2.1	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.595244451	sgMsh2	cell line
chr5	137758482	137758482	TG	T	ENSMUST00000110985.1	2	ENSMUSG00000029723	FS	L/X	57	Tsc22d4	ENSMUST00000110985.1:c.177del	ENSMUSP00000106613.1:p.Pro60GlnfsTer18	H-2-Kb	9	22	0	VGWTKAFSL	NA	NetMHCpan	103.3	NA	NA	56	0.286	321.493	NA	NA	NA	216.16	NA	103.3	NA	472.1826226	NA	426.8251484	M3	0.3	0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.281	56	0	0	NA	5qG2	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr6	67486278	67486278	C	A	ENSMUST00000118364.1	1	ENSMUSG00000049093	missense	R/M	77	Il23r	ENSMUST00000118364.1:c.230G>T	ENSMUSP00000113342.1:p.Arg77Met	H-2-Kb	9	11	1	MNLYFYKNG	RNLYFYKNG	SMM	353.273	671.599	1.901	153	0.15	359.984	705.454	1.96	739.31	362.49	1520.2	781.2	671.5989369	353.2726369	665.6562285	357.4785601	M3	-0.542857143	-0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.162	153	0	0	NA	6qC1	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.693738137	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	9	6	6	VSYTRLLVA	VSYTRILVA	NetMHCpan	129.9	163.6	1.259	152	0.125	176.155	270.535	1.536	712.71	415.25	163.6	129.9	323.6756285	203.287184	217.3952246	149.021867	M3	1.014285714	1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.139	152	0	0	NA	6qB2.1	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.595244451	sgMsh2	cell line
chr6	57210453	57210453	T	C	ENSMUST00000227421.1	NA	ENSMUSG00000064259	missense	M/T	199	Vmn1r13	ENSMUST00000227421.1:c.596T>C	ENSMUSP00000154429.1:p.Met199Thr	H-2-Kb	9	8	4	SAYTVIILF	SAYMVIILF	SMM	379.411	316.308	0.834	402	0.124	425.127	352.082	0.828	351.59	425.39	1259.3	742	316.3078717	379.4110717	352.5737704	424.864065	M3	2.542857143	2.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.132	402	0	0	NA	6qB3	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.565268112	sgMsh2	cell line
chr7	18482720	18482720	A	G	ENSMUST00000094798.4	1	ENSMUSG00000070799	missense	F/L	65	Psg26	ENSMUST00000094798.4:c.193T>C	ENSMUSP00000092392.3:p.Phe65Leu	H-2-Db	9	3	9	NMPENLLVL	NMPENLLVF	NetMHC	51.07	357.1	6.992	319	0.263	252.535	664.037	2.629	357.1	51.07	1210.5	348.7	578.9219283	219.5937625	749.1520978	285.476261	M3	1	1	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.26	319	0	0	NA	7qA3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr7	25272796	25272796	A	G	ENSMUST00000169266.7	1	ENSMUSG00000005442	missense	I/V	651	Cic	ENSMUST00000169266.7:c.1951A>G	ENSMUSP00000132351.1:p.Ile651Val	H-2-Db	10	2	10	FSPINASPVV	FSPINASPVI	NetMHC	14.9	8.41	0.564	40	0.25	465.206	229.143	0.493	8.41	14.9	34.4	92.4	423.8869047	838.0115415	542.8376978	1013.141255	M3	1.257142857	1.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.264	40	30	6	0.2	7qA3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr7	27434265	27434265	C	A	ENSMUST00000011895.13	1	ENSMUSG00000011751	missense	D/Y	89	Sptbn4	ENSMUST00000011895.13:c.265G>T	ENSMUSP00000011895.7:p.Asp89Tyr	H-2-Kb	8	5	7	IGDLYAYL	IGDLYADL	NetMHC	13.99	86.99	6.218	64	0.203	21.414	85.734	4.004	86.99	13.99	408.8	46.9	84.47729517	22.84230889	72.56713881	19.98664966	M3	0.414285714	0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.21	64	0	0	NA	7qA3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.899290177	sgMsh2	cell line
chr7	4628730	4628730	G	A	ENSMUST00000055085.7	1	ENSMUSG00000045282	missense	H/Y	108	Tmem86b	ENSMUST00000055085.7:c.322C>T	ENSMUSP00000060237.6:p.His108Tyr	H-2-Kb	8	5	7	AAFSVAYL	AAFSVAHL	NetMHC	14.01	11.96	0.854	38	0.158	31.802	29.743	0.935	11.96	14.01	19.7	24	41.47056956	39.60408646	39.78689062	40.90157201	M3	1.757142857	1.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.195	38	2	0	0	7qA1	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.835055165	sgMsh2	cell line
chr7	19643130	19643130	A	C	ENSMUST00000055242.10	1	ENSMUSG00000002981	missense	F/V	170	Clptm1	ENSMUST00000055242.10:c.508T>G	ENSMUSP00000051293.9:p.Phe170Val	H-2-Kb	8	4	8	SIYIHVYV	SIYIHVYF	NetMHC	15.47	62.57	4.045	96	0.26	41.881	121.629	2.904	62.57	15.47	80.8	57.4	162.4575876	35.70590129	166.6249377	48.05515695	M3	1.657142857	1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.272	96	213	43	0.201877934	7qA3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr7	4771071	4771071	GA	G	ENSMUST00000174409.1	5	ENSMUSG00000092518	FS	F/X	14	Fam71e2	ENSMUST00000174409.1:c.41del	ENSMUSP00000133885.2:p.Phe14SerfsTer43	H-2-Kb	8	5	7	RLWRFFSL	RLWRFFFP	NetMHCpan	40	3409.1	85.227	25	0.28	45.019	2301.187	51.116	7935.2	49.79	3409.1	40	1193.273511	57.90819124	958.826437	40.2476011	M3	1	1	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.28	25	0	0	NA	7qA1	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr7	29386096	29386096	A	G	ENSMUST00000085809.10	5	ENSMUSG00000030583	missense	V/A	692	Sipa1l3	ENSMUST00000085809.10:c.2075T>C	ENSMUSP00000082965.4:p.Val692Ala	H-2-Kb	8	7	5	IMFHASTL	IMFHVSTL	NetMHCpan	22.2	20.2	0.91	137	0.219	66.789	50.906	0.762	38.17	52.53	20.2	22.2	63.64144033	81.04757034	63.93519587	81.98605697	M3	0.8	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	137	141	35	0.24822695	7qB1	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.972089858	sgMsh2	cell line
chr6	141532679	141532679	A	G	ENSMUST00000032362.11	1	ENSMUSG00000030235	missense	K/R	56	Slco1c1	ENSMUST00000032362.11:c.167A>G	ENSMUSP00000032362.9:p.Lys56Arg	H-2-Kb	8	4	8	LSFVYFAR	LSFVYFAK	NetMHC	71.6	273.33	3.817	116	0.172	97.337	165.283	1.698	273.33	71.6	241.7	126.8	88.86689373	86.84403626	56.4598864	107.830098	M3	0.714285714	1.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.171	116	0	0	NA	6qG2	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.732279145	sgMsh2	cell line
chr7	4628730	4628730	G	A	ENSMUST00000055085.7	1	ENSMUSG00000045282	missense	H/Y	108	Tmem86b	ENSMUST00000055085.7:c.322C>T	ENSMUSP00000060237.6:p.His108Tyr	H-2-Kb	8	9	3	VAYLFYLG	VAHLFYLG	SMM	25.807	303.907	11.776	38	0.158	59.375	717.408	12.083	2140.81	77.28	1012.4	95.7	303.9065077	25.80714726	422.4156501	41.47056956	M3	1.314285714	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.195	38	2	0	0	7qA1	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.835055165	sgMsh2	cell line
chr6	141532679	141532679	A	G	ENSMUST00000032362.11	1	ENSMUSG00000030235	missense	K/R	56	Slco1c1	ENSMUST00000032362.11:c.167A>G	ENSMUSP00000032362.9:p.Lys56Arg	H-2-Kb	8	5	7	SFVYFARA	SFVYFAKA	NetMHC	104.42	421.4	4.036	116	0.172	172.62	538.576	3.12	421.4	104.42	215.7	105.5	804.8964279	281.6696149	655.752568	239.7397234	M3	1.085714286	1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.171	116	0	0	NA	6qG2	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.732279145	sgMsh2	cell line
chr6	141532679	141532679	A	G	ENSMUST00000032362.11	1	ENSMUSG00000030235	missense	K/R	56	Slco1c1	ENSMUST00000032362.11:c.167A>G	ENSMUSP00000032362.9:p.Lys56Arg	H-2-Kb	8	6	6	FVYFARAL	FVYFAKAL	NetMHCpan	53.9	100.9	1.872	116	0.172	100.957	211.274	2.093	281	106.91	100.9	53.9	196.218522	95.00358634	226.3288934	123.2366829	M3	1.228571429	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.171	116	0	0	NA	6qG2	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.732279145	sgMsh2	cell line
chr6	149166910	149166910	T	C	ENSMUST00000111535.7	5	ENSMUSG00000068250	missense	N/S	200	Amn1	ENSMUST00000111535.7:c.599A>G	ENSMUSP00000107160.1:p.Asn200Ser	H-2-Kb	8	11	1	SMRYCINL	NMRYCINL	NetMHCpan	101.1	516.9	5.113	140	0.157	283.649	1809.961	6.381	960.79	147.79	516.9	101.1	2665.262568	419.5077612	2659.132635	468.5328006	M3	0.485714286	0.485714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.168	140	54	8	0.148148148	6qG3	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	sgMsh2	cell line
chr6	124061284	124061284	C	T	ENSMUST00000032238.4	1	ENSMUSG00000096630	missense	A/V	606	Vmn2r26	ENSMUST00000032238.4:c.1817C>T	ENSMUSP00000032238.3:p.Ala606Val	H-2-Kb	8	10	2	SVFSAMIL	SAFSAMIL	NetMHCpan	95.4	113.7	1.192	262	0.183	207.424	182.361	0.879	129.9	176.21	113.7	95.4	234.8226582	238.6382195	365.3759857	337.8625068	M3	2.6	2.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.186	262	0	0	NA	6qF2	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.796514157	sgMsh2	cell line
chr7	24566482	24566482	A	G	ENSMUST00000205573.1	1	ENSMUSG00000051768	missense	I/V	197	Xrcc1	ENSMUST00000205573.1:c.589A>G	ENSMUSP00000146105.1:p.Ile197Val	H-2-Kb	8	4	8	GALFFSRV	GALFFSRI	NetMHCpan	124.6	118.2	0.949	108	0.222	263.463	424.193	1.61	478.78	293.72	118.2	124.6	555.5715525	306.013087	369.6068402	233.2061504	M3	1.442857143	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.213	108	72	17	0.236111111	7qA3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.91213718	sgMsh2	cell line
chr6	125980155	125980155	A	G	ENSMUST00000160496.7	1	ENSMUSG00000038115	missense	K/R	629	Ano2	ENSMUST00000160496.7:c.1886A>G	ENSMUSP00000125303.1:p.Lys629Arg	H-2-Kb	8	6	6	KAFLLRFV	KAFLLKFV	NetMHCpan	272.4	547.6	2.01	266	0.154	351.17	682.716	1.944	1229.78	480.77	547.6	272.4	681.9303192	330.1718172	683.502331	372.1688324	M3	2.1	2.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.174	266	0	0	NA	6qF3	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.745126147	sgMsh2	cell line
chr6	123704621	123704621	A	T	ENSMUST00000172391.3	5	ENSMUSG00000091620	missense	I/F	163	Vmn2r23	ENSMUST00000172391.3:c.487A>T	ENSMUSP00000126682.2:p.Ile163Phe	H-2-Kb	8	7	5	QISQFLSL	QISQILSL	SMM	366.218	11554.203	31.55	351	0.185	483.614	12379.626	25.598	14348.38	566.45	6784.1	439.1	11554.20317	366.2182643	13205.04848	528.128981	M3	1.4	1.4	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.186	351	0	0	NA	6qF2	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.796514157	sgMsh2	cell line
chr6	149166910	149166910	T	C	ENSMUST00000111535.7	5	ENSMUSG00000068250	missense	N/S	200	Amn1	ENSMUST00000111535.7:c.599A>G	ENSMUSP00000107160.1:p.Asn200Ser	H-2-Kb	9	10	2	ISMRYCINL	INMRYCINL	NetMHC	5.23	8.07	1.543	140	0.157	46.523	52.477	1.128	8.07	5.23	6.8	5.9	113.0082111	106.1964502	96.88354023	87.14651012	M3	0.485714286	0.971428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.168	140	54	8	0.148148148	6qG3	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	sgMsh2	cell line
chr6	141532679	141532679	A	G	ENSMUST00000032362.11	1	ENSMUSG00000030235	missense	K/R	56	Slco1c1	ENSMUST00000032362.11:c.167A>G	ENSMUSP00000032362.9:p.Lys56Arg	H-2-Kb	9	4	8	LSFVYFARA	LSFVYFAKA	NetMHC	8.07	18.23	2.259	116	0.172	41.355	63.038	1.524	18.23	8.07	19.6	12.2	162.2220929	88.94263671	106.4755765	70.50988397	M3	1.085714286	1.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.171	116	0	0	NA	6qG2	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.732279145	sgMsh2	cell line
chr7	4628730	4628730	G	A	ENSMUST00000055085.7	1	ENSMUSG00000045282	missense	H/Y	108	Tmem86b	ENSMUST00000055085.7:c.322C>T	ENSMUSP00000060237.6:p.His108Tyr	H-2-Kb	9	9	3	VAYLFYLGA	VAHLFYLGA	NetMHC	8.59	79.22	9.222	38	0.158	20.803	109.661	5.272	79.22	8.59	82.2	17.5	137.1229033	24.10515897	164.1534444	30.21690645	M3	1.314285714	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.195	38	2	0	0	7qA1	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.835055165	sgMsh2	cell line
chr6	124061284	124061284	C	T	ENSMUST00000032238.4	1	ENSMUSG00000096630	missense	A/V	606	Vmn2r26	ENSMUST00000032238.4:c.1817C>T	ENSMUSP00000032238.3:p.Ala606Val	H-2-Kb	9	7	5	ISLSVFSAM	ISLSAFSAM	NetMHC	29.67	17.34	0.584	262	0.183	96.824	71.54	0.739	17.34	29.67	28.5	31.8	114.5803119	161.8489924	169.9221522	190.6557905	M3	1.842857143	1.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.186	262	0	0	NA	6qF2	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.796514157	sgMsh2	cell line
chr7	25630422	25630422	G	T	ENSMUST00000205808.1	5	ENSMUSG00000060376	missense	P/H	92	Bckdha	ENSMUST00000205808.1:c.275C>A	ENSMUSP00000146018.1:p.Pro92His	H-2-Kb	9	10	5	RSWKHLSRL	RSWKPLSRL	NetMHCpan	40.3	284.5	7.06	27	0.407	90.509	379.431	4.192	202.73	43.85	284.5	40.3	474.3621186	146.9298381	571.8077009	137.1671136	M3	-0.814285714	-0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.423	27	130	43	0.330769231	7qA3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	2	1	sgMsh2	cell line
chr7	29386096	29386096	A	G	ENSMUST00000085809.10	5	ENSMUSG00000030583	missense	V/A	692	Sipa1l3	ENSMUST00000085809.10:c.2075T>C	ENSMUSP00000082965.4:p.Val692Ala	H-2-Kb	9	7	5	IMFHASTLL	IMFHVSTLL	NetMHCpan	34.3	42.3	1.233	137	0.219	73.196	96.94	1.324	95	76.39	42.3	34.3	98.88035114	70.00192775	121.4087534	108.2056654	M3	1.071428571	1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	137	141	35	0.24822695	7qB1	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.972089858	sgMsh2	cell line
chr7	18482720	18482720	A	G	ENSMUST00000094798.4	1	ENSMUSG00000070799	missense	F/L	65	Psg26	ENSMUST00000094798.4:c.193T>C	ENSMUSP00000092392.3:p.Phe65Leu	H-2-Kb	9	9	3	LVLGWYRGM	LVFGWYRGM	NetMHC	86.04	27.38	0.318	319	0.263	190.368	53.845	0.283	27.38	86.04	45.3	209.8	62.38928378	175.0289954	74.17370966	205.7074402	M3	-0.257142857	0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.26	319	0	0	NA	7qA3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr6	141532679	141532679	A	G	ENSMUST00000032362.11	1	ENSMUSG00000030235	missense	K/R	56	Slco1c1	ENSMUST00000032362.11:c.167A>G	ENSMUSP00000032362.9:p.Lys56Arg	H-2-Kb	9	5	7	SFVYFARAL	SFVYFAKAL	NetMHC	90.76	210.98	2.325	116	0.172	303.576	377.92	1.245	210.98	90.76	211.2	119.5	544.6405843	487.6519891	802.1396792	782.0778752	M3	1.228571429	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.171	116	0	0	NA	6qG2	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.732279145	sgMsh2	cell line
chr7	4628730	4628730	G	A	ENSMUST00000055085.7	1	ENSMUSG00000045282	missense	H/Y	108	Tmem86b	ENSMUST00000055085.7:c.322C>T	ENSMUSP00000060237.6:p.His108Tyr	H-2-Kb	9	7	5	FSVAYLFYL	FSVAHLFYL	NetMHC	117.61	191.04	1.624	38	0.158	191.366	229.821	1.201	191.04	117.61	177.5	167.4	268.6024688	215.332707	304.2636004	242.2423104	M3	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.195	38	2	0	0	7qA1	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.835055165	sgMsh2	cell line
chr7	4771071	4771071	GA	G	ENSMUST00000174409.1	5	ENSMUSG00000092518	FS	F/X	14	Fam71e2	ENSMUST00000174409.1:c.41del	ENSMUSP00000133885.2:p.Phe14SerfsTer43	H-2-Kb	9	6	6	LWRFFSLRL	LWRFFFPPP	SMM	97.076	105.223	1.084	25	0.28	188.492	1429.566	7.584	2591.06	197.82	2680.5	230.1	105.2228353	97.07558134	268.0711022	179.1636906	M3	0.485714286	1	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.28	25	0	0	NA	7qA1	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr6	108399280	108399280	C	T	ENSMUST00000032192.8	1	ENSMUSG00000030102	missense	R/W	1235	Itpr1	ENSMUST00000032192.8:c.3703C>T	ENSMUSP00000032192.6:p.Arg1235Trp	H-2-Kb	9	9	3	IMWLAHEFL	IMRLAHEFL	NetMHCpan	173.3	364.8	2.105	105	0.21	275.443	622.207	2.259	738.74	227.21	364.8	173.3	566.3827268	323.6756285	678.0317017	326.7758854	M3	0.657142857	0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	105	20	3	0.15	6qE1	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	2	0.972089858	sgMsh2	cell line
chr6	123704621	123704621	A	T	ENSMUST00000172391.3	5	ENSMUSG00000091620	missense	I/F	163	Vmn2r23	ENSMUST00000172391.3:c.487A>T	ENSMUSP00000126682.2:p.Ile163Phe	H-2-Kb	9	6	6	TQISQFLSL	TQISQILSL	NetMHCpan	172.2	1333.9	7.746	351	0.185	419.276	2121.116	5.059	2185.82	257.64	1333.9	172.2	2056.411387	580.9115347	2350.985768	687.4640623	M3	1.4	1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.186	351	0	0	NA	6qF2	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.796514157	sgMsh2	cell line
chr6	134484391	134484391	T	G	ENSMUST00000032322.14	1	ENSMUSG00000030201	missense	E/A	701	Lrp6	ENSMUST00000032322.14:c.2102A>C	ENSMUSP00000032322.8:p.Glu701Ala	H-2-Kb	9	4	8	SALEHVVAF	SALEHVVEF	NetMHC	346.5	552.55	1.595	196	0.179	444.167	549.223	1.237	552.55	346.5	572.2	399.4	545.8961105	515.3591605	539.8212792	488.9337312	M3	1.442857143	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.173	196	178	29	0.162921348	6qG1	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.740843813	sgMsh2	cell line
chr7	6570449	6570449	T	C	ENSMUST00000219278.1	5	ENSMUSG00000056696	missense	F/L	153	Olfr1350	ENSMUST00000219278.1:c.457T>C	ENSMUSP00000151318.1:p.Phe153Leu	H-2-Kb	9	3	9	VAWVSGLLL	VAWVSGLLF	NetMHCpan	348.1	1024.4	2.943	161	0.292	393.752	708.79	1.8	668.98	403.7	1024.4	348.1	647.3065476	383.8044448	748.6003055	432.7628777	M3	1.928571429	1.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.294	161	0	0	NA	7qA1	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr7	27434265	27434265	C	A	ENSMUST00000011895.13	1	ENSMUSG00000011751	missense	D/Y	89	Sptbn4	ENSMUST00000011895.13:c.265G>T	ENSMUSP00000011895.7:p.Asp89Tyr	H-2-Kb	9	9	3	YAYLRDGFV	YADLRDGFV	SMMPMBEC	300.781	3691.901	12.274	64	0.203	367.41	8365.849	22.77	12284.26	414.85	15096.3	552.7	4447.438999	319.9705442	3691.900603	300.7807237	M3	0.157142857	0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.21	64	0	0	NA	7qA3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.899290177	sgMsh2	cell line
chr7	4628730	4628730	G	A	ENSMUST00000055085.7	1	ENSMUSG00000045282	missense	H/Y	108	Tmem86b	ENSMUST00000055085.7:c.322C>T	ENSMUSP00000060237.6:p.His108Tyr	H-2-Kb	9	10	2	AYLFYLGAF	AHLFYLGAF	SMMPMBEC	401.098	529.968	1.321	38	0.158	478.522	581.999	1.216	521.98	499.84	754.5	1485.8	634.0302809	457.2039776	529.9684305	401.0975415	M3	1.9	1.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.195	38	2	0	0	7qA1	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.835055165	sgMsh2	cell line
chr7	6570449	6570449	T	C	ENSMUST00000219278.1	5	ENSMUSG00000056696	missense	F/L	153	Olfr1350	ENSMUST00000219278.1:c.457T>C	ENSMUSP00000151318.1:p.Phe153Leu	H-2-Kb	9	6	6	VSGLLLSTF	VSGLLFSTF	SMM	326.671	146.93	0.45	161	0.292	447.243	166.874	0.373	171.1	513.2	239.6	1562.7	146.9298381	326.6705622	162.6484766	381.2852457	M3	1.757142857	1.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.294	161	0	0	NA	7qA1	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr7	4628730	4628730	G	A	ENSMUST00000055085.7	1	ENSMUSG00000045282	missense	H/Y	108	Tmem86b	ENSMUST00000055085.7:c.322C>T	ENSMUSP00000060237.6:p.His108Tyr	H-2-Kb	10	9	3	VAYLFYLGAF	VAHLFYLGAF	NetMHC	24.17	187.85	7.772	38	0.158	384.486	1494.672	3.887	187.85	24.17	197.7	43.1	3616.845854	964.5616704	2791.643777	725.8719263	M3	1.9	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.195	38	2	0	0	7qA1	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.835055165	sgMsh2	cell line
chr7	103716707	103716707	A	C	ENSMUST00000215723.1	5	ENSMUSG00000094822	missense	I/L	38	Olfr243	ENSMUST00000215723.1:c.112A>C	ENSMUSP00000150329.1:p.Ile38Leu	H-2-Kb	8	8	4	IMYLIALL	IMYIIALL	NetMHC	6.59	7.5	1.138	222	0.185	18.294	22.457	1.228	7.5	6.59	12.5	10.9	39.97053856	33.09329418	32.41455024	25.68857419	M3	2.614285714	2.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.198	222	0	0	NA	7qE3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.847902167	sgMsh2	cell line
chr7	41872661	41872661	T	C	ENSMUST00000171671.2	5	ENSMUSG00000090383	missense	I/V	4	Vmn2r58	ENSMUST00000171671.2:c.10A>G	ENSMUSP00000126966.1:p.Ile4Val	H-2-Kb	8	3	2	WVFTFGLL	WIFTFGLL	SMMPMBEC	16.933	12.071	0.713	108	0.167	20.077	14.348	0.715	14.74	18.24	31.9	25.2	13.95532644	21.91492557	12.07090967	16.93323751	M3	2.328571429	2.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.16	108	0	0	NA	7qB3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.685173469	sgMsh2	cell line
chr7	80717097	80717097	T	A	ENSMUST00000167377.2	1	ENSMUSG00000030536	missense	I/F	1592	Iqgap1	ENSMUST00000167377.2:c.4774A>T	ENSMUSP00000128278.1:p.Ile1592Phe	H-2-Kb	8	7	5	VIFEFGPT	VIFEIGPT	NetMHC	19.03	1460.12	76.727	124	0.25	28.727	1248.514	43.461	1460.12	19.03	1472.7	69.5	1036.907462	32.86548155	614.8086937	24.58895091	M3	0.557142857	1.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.265	124	418	127	0.303827751	7qD3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr7	80620550	80620550	A	C	ENSMUST00000122255.7	1	ENSMUSG00000030527	missense	S/A	129	Crtc3	ENSMUST00000122255.7:c.385T>G	ENSMUSP00000113540.1:p.Ser129Ala	H-2-Kb	8	7	5	ASYSAQHL	ASYSSQHL	NetMHC	20.45	24.57	1.201	99	0.232	46.405	54.652	1.178	24.57	20.45	46.1	34.5	63.20333573	58.30959165	76.69022289	67.8797134	M3	-0.571428571	-0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.233	99	23	2	0.086956522	7qD3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.997783864	sgMsh2	cell line
chr7	108066532	108066532	T	C	ENSMUST00000071658.2	NA	ENSMUSG00000063120	missense	M/V	89	Olfr480	ENSMUST00000071658.2:c.265A>G	ENSMUSP00000071583.2:p.Met89Val	H-2-Kb	8	11	1	VYLFLSHL	MYLFLSHL	NetMHCpan	13.1	28.9	2.206	184	0.201	134.327	287.934	2.144	52.58	23.33	28.9	13.1	523.2870654	245.323979	556.8522772	262.8693795	M3	1.271428571	1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.201	184	0	0	NA	7qE3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.86074917	sgMsh2	cell line
chr7	104579774	104579774	C	A	ENSMUST00000217466.1	5	ENSMUSG00000073926	missense	L/I	43	Olfr653	ENSMUST00000217466.1:c.127C>A	ENSMUSP00000149192.1:p.Leu43Ile	H-2-Kb	8	7	5	SMYIIALV	SMYILALV	NetMHC	36.14	15.33	0.424	177	0.226	160.928	65.748	0.409	15.33	36.14	41.6	75.4	89.89592386	268.9923939	105.1332282	246.456343	M3	2.771428571	2.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.235	177	0	0	NA	7qE3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr7	38267472	38267472	T	A	ENSMUST00000032585.7	1	ENSMUSG00000030423	missense	T/S	62	Pop4	ENSMUST00000032585.7:c.184A>T	ENSMUSP00000032585.6:p.Thr62Ser	H-2-Kb	8	6	6	ILEYFSRL	ILEYFTRL	NetMHCpan	33.3	36.2	1.087	36	0.083	58.969	82.764	1.404	77.07	45.87	36.2	33.3	155.5034397	122.9532464	88.45858744	72.06759014	M3	0.042857143	0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.088	36	79	28	0.35443038	7qB3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.376845408	sgMsh2	cell line
chr7	56734976	56734976	CT	C	ENSMUST00000068911.12	1	ENSMUSG00000055026	FS	K/X	279	Gabrg3	ENSMUST00000068911.12:c.836del	ENSMUSP00000067632.6:p.Lys279ArgfsTer10	H-2-Kb	8	5	7	VSFWIKRM	VSFWIKKD	NetMHCpan	32.2	11566.3	359.202	62	0.258	88.005	7143.686	81.173	17420.67	52.49	11566.3	32.2	2721.071791	159.8600704	1777.215122	123.5207728	M3	-0.128571429	0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.304	62	0	0	NA	7qB5	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr7	103561109	103561109	G	A	ENSMUST00000215673.1	5	ENSMUSG00000073947	missense	D/N	211	Olfr615	ENSMUST00000215673.1:c.631G>A	ENSMUSP00000150166.1:p.Asp211Asn	H-2-Kb	8	10	2	VNFLLIAI	VDFLLIAI	NetMHCpan	40	2359.1	58.977	154	0.208	96.14	1509.699	15.703	3768.11	92.57	2359.1	40	660.2980276	99.71029474	655.752568	115.2762924	M3	2.528571429	2.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.22	154	0	0	NA	7qE3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.942113519	sgMsh2	cell line
chr7	105555462	105555462	AC	A	ENSMUST00000046983.9	1	ENSMUSG00000037049	FS	P/X	183	Smpd1	ENSMUST00000046983.9:c.551del	ENSMUSP00000042187.8:p.Pro184GlnfsTer72	H-2-Kb	8	47	0	VQIHFAAA	NA	SMMPMBEC	150.918	NA	NA	75	0.307	175.233	NA	NA	NA	165.65	NA	488.7	NA	184.8161845	NA	150.9176382	M3	0.857142857	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.319	75	55	2	0.036363636	7qE3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr7	105555462	105555462	AC	A	ENSMUST00000046983.9	1	ENSMUSG00000037049	FS	P/X	183	Smpd1	ENSMUST00000046983.9:c.551del	ENSMUSP00000042187.8:p.Pro184GlnfsTer72	H-2-Kb	8	38	0	STWRAQTL	NA	NetMHCpan	140.5	NA	NA	75	0.307	249.349	NA	NA	NA	259.51	NA	140.5	NA	239.1883374	NA	262.2647967	M3	-0.671428571	-0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.319	75	55	2	0.036363636	7qE3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr7	108714066	108714066	C	A	ENSMUST00000074730.3	NA	ENSMUSG00000056946	missense	L/M	238	Olfr512	ENSMUST00000074730.3:c.712C>A	ENSMUSP00000074291.4:p.Leu238Met	H-2-Kb	8	6	6	ILFTIMRM	ILFTILRM	NetMHCpan	74.1	112.6	1.52	294	0.272	290.124	605.685	2.088	729.71	264.21	112.6	74.1	758.1235717	462.1042896	481.6593553	316.0385059	M3	1.385714286	1.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.26	294	0	0	NA	7qE3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr7	106886521	106886521	G	T	ENSMUST00000213918.1	5	ENSMUSG00000109354	missense	L/I	99	Olfr706	ENSMUST00000213918.1:c.295C>A	ENSMUSP00000150075.1:p.Leu99Ile	H-2-Kb	8	11	1	IQMALALM	LQMALALM	NetMHCpan	225.8	1084.7	4.804	186	0.226	488.486	2680.818	5.488	2769.01	369.2	1084.7	225.8	3653.759857	770.4420888	2592.626764	607.7710368	M3	1.642857143	2.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.243	186	0	0	NA	7qE3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr7	38267472	38267472	T	A	ENSMUST00000032585.7	1	ENSMUSG00000030423	missense	T/S	62	Pop4	ENSMUST00000032585.7:c.184A>T	ENSMUSP00000032585.6:p.Thr62Ser	H-2-Kb	8	5	7	VILEYFSR	VILEYFTR	SMM	209.286	253.361	1.211	36	0.083	412.364	591.486	1.434	722.99	456.82	972.2	944.7	253.3611374	209.2859144	459.9811133	367.908651	M3	0.142857143	1.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.088	36	79	28	0.35443038	7qB3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.376845408	sgMsh2	cell line
chr7	108066532	108066532	T	C	ENSMUST00000071658.2	NA	ENSMUSG00000063120	missense	M/V	89	Olfr480	ENSMUST00000071658.2:c.265A>G	ENSMUSP00000071583.2:p.Met89Val	H-2-Kb	8	8	4	HTPVYLFL	HTPMYLFL	NetMHCpan	245.7	219.6	0.894	184	0.201	262.002	292.515	1.116	407.26	463.94	219.6	245.7	316.0385059	266.5262568	268.9923939	257.4779247	M3	1.571428571	1.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.201	184	0	0	NA	7qE3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.86074917	sgMsh2	cell line
chr7	103561109	103561109	G	A	ENSMUST00000215673.1	5	ENSMUSG00000073947	missense	D/N	211	Olfr615	ENSMUST00000215673.1:c.631G>A	ENSMUSP00000150166.1:p.Asp211Asn	H-2-Kb	8	6	6	FSFGVNFL	FSFGVDFL	SMM	150.571	284.931	1.892	154	0.208	316.091	920.531	2.912	2167.05	614.28	1461.1	439.1	284.9311953	150.5705372	379.9618556	193.0812048	M3	1.271428571	1.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.22	154	0	0	NA	7qE3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.942113519	sgMsh2	cell line
chr7	103716707	103716707	A	C	ENSMUST00000215723.1	5	ENSMUSG00000094822	missense	I/L	38	Olfr243	ENSMUST00000215723.1:c.112A>C	ENSMUSP00000150329.1:p.Ile38Leu	H-2-Kb	8	4	8	IPFCIMYL	IPFCIMYI	SMM	196.671	1275.675	6.486	222	0.185	358.839	1521.937	4.241	3985.97	809.74	1768.2	520.1	1275.674869	196.6708524	1134.33152	197.5786438	M3	1.8	1.9	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.198	222	0	0	NA	7qE3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.847902167	sgMsh2	cell line
chr7	86811337	86811337	G	A	ENSMUST00000164996.1	5	ENSMUSG00000090949	missense	V/I	624	Vmn2r77	ENSMUST00000164996.1:c.1870G>A	ENSMUSP00000129540.1:p.Val624Ile	H-2-Kb	8	6	6	ETLSYILL	ETLSYVLL	SMMPMBEC	299.737	258.071	0.861	241	0.286	438.719	380.319	0.867	864.89	988.22	444.6	532.5	316.0385059	344.9371732	258.0714726	299.7367541	M3	1.871428571	1.871428571	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.28	241	0	0	NA	7qD3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr7	105368670	105368670	A	C	ENSMUST00000217827.1	NA	ENSMUSG00000073906	missense	M/L	115	Olfr692	ENSMUST00000217827.1:c.343A>C	ENSMUSP00000151295.1:p.Met115Leu	H-2-Kb	8	9	3	IQLFFVHA	IQMFFVHA	SMMPMBEC	284.931	375.612	1.318	135	0.185	431.481	503.096	1.166	956.99	1001.03	255.3	495.9	630.579721	367.0624846	375.6124682	284.9311953	M3	1.242857143	1.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.192	135	0	0	NA	7qE3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.822208162	sgMsh2	cell line
chr7	105143658	105143658	C	T	ENSMUST00000061284.3	NA	ENSMUSG00000044120	missense	D/N	218	Olfr683	ENSMUST00000061284.3:c.652G>A	ENSMUSP00000060527.3:p.Asp218Asn	H-2-Kb	8	10	2	SNLILIVL	SDLILIVL	SMM	367.062	2430.748	6.622	149	0.282	476.43	6449.731	13.538	17044.98	1011.54	10030.4	448.5	2430.748352	367.0624846	2869.06244	504.3592613	M3	3.014285714	3.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.298	149	0	0	NA	7qE3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr7	38267472	38267472	T	A	ENSMUST00000032585.7	1	ENSMUSG00000030423	missense	T/S	62	Pop4	ENSMUST00000032585.7:c.184A>T	ENSMUSP00000032585.6:p.Thr62Ser	H-2-Kb	9	5	7	VILEYFSRL	VILEYFTRL	NetMHC	3.73	4.56	1.223	36	0.083	11.527	13.92	1.208	4.56	3.73	4.6	4.3	23.39429705	18.75469475	23.24074256	20.19528563	M3	0.042857143	1.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.088	36	79	28	0.35443038	7qB3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.376845408	sgMsh2	cell line
chr7	86811337	86811337	G	A	ENSMUST00000164996.1	5	ENSMUSG00000090949	missense	V/I	624	Vmn2r77	ENSMUST00000164996.1:c.1870G>A	ENSMUSP00000129540.1:p.Val624Ile	H-2-Kb	9	8	4	LSYILLTSL	LSYVLLTSL	NetMHCpan	26.5	23.3	0.879	241	0.286	55.636	50.423	0.906	24.09	28.24	23.3	26.5	76.75558746	92.92017092	84.382036	83.03286055	M3	1.871428571	1.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.28	241	0	0	NA	7qD3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr7	108066532	108066532	T	C	ENSMUST00000071658.2	NA	ENSMUSG00000063120	missense	M/V	89	Olfr480	ENSMUST00000071658.2:c.265A>G	ENSMUSP00000071583.2:p.Met89Val	H-2-Kb	9	10	2	PVYLFLSHL	PMYLFLSHL	SMM	27.74	12.797	0.461	184	0.201	31.825	25.891	0.814	28.38	30.85	39.4	32.8	12.79705392	27.74022632	23.40183969	47.56089297	M3	1.271428571	1.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.201	184	0	0	NA	7qE3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.86074917	sgMsh2	cell line
chr7	103561109	103561109	G	A	ENSMUST00000215673.1	5	ENSMUSG00000073947	missense	D/N	211	Olfr615	ENSMUST00000215673.1:c.631G>A	ENSMUSP00000150166.1:p.Asp211Asn	H-2-Kb	9	4	8	VIFSFGVNF	VIFSFGVDF	NetMHCpan	42.3	148.3	3.506	154	0.208	60.077	160.513	2.672	163.95	45.49	148.3	42.3	157.0760603	74.66378462	165.6723376	97.55510484	M3	1.128571429	2.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.22	154	0	0	NA	7qE3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.942113519	sgMsh2	cell line
chr7	103418304	103418304	A	G	ENSMUST00000079348.3	1	ENSMUSG00000058976	missense	S/G	269	Usp17lc	ENSMUST00000079348.3:c.805A>G	ENSMUSP00000078323.3:p.Ser269Gly	H-2-Kb	9	10	2	VGYPEFLDL	VSYPEFLDL	NetMHCpan	39.3	16.9	0.43	364	0.214	113.749	40.856	0.359	20.32	61.06	16.9	39.3	61.39174812	176.2422384	62.84200023	166.4370463	M3	0.071428571	0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.222	364	0	0	NA	7qE3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.950678188	sgMsh2	cell line
chr7	104084873	104084873	G	A	ENSMUST00000057104.6	NA	ENSMUSG00000051340	missense	S/F	69	Olfr645	ENSMUST00000057104.6:c.206C>T	ENSMUSP00000062821.3:p.Ser69Phe	H-2-Kb	9	7	5	LSLLFVNDL	LSLLSVNDL	NetMHC	62.61	2365.54	37.782	167	0.275	209.242	1943.236	9.287	2365.54	62.61	2848.4	144.8	1520.932709	297.9270937	1291.962773	273.6843727	M3	1.628571429	2.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.267	167	0	0	NA	7qE3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr7	86230157	86230157	G	T	ENSMUST00000165771.1	5	ENSMUSG00000091239	missense	L/I	312	Vmn2r76	ENSMUST00000165771.1:c.934C>A	ENSMUSP00000127309.1:p.Leu312Ile	H-2-Kb	9	11	1	IFNSFHGTL	LFNSFHGTL	NetMHC	90.6	323.06	3.566	121	0.24	213.074	517.132	2.427	323.06	90.6	536.4	171.4	497.86317	254.7475407	565.2622723	289.2344371	M3	-0.285714286	0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	121	0	0	NA	7qD3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.967807524	sgMsh2	cell line
chr7	41872661	41872661	T	C	ENSMUST00000171671.2	5	ENSMUSG00000090383	missense	I/V	4	Vmn2r58	ENSMUST00000171671.2:c.10A>G	ENSMUSP00000126966.1:p.Ile4Val	H-2-Kb	9	1	4	MFWVFTFGL	MFWIFTFGL	NetMHC	111.05	130.99	1.18	108	0.167	219.588	235.322	1.072	130.99	111.05	717.3	597.1	205.6411387	169.8673846	265.0025177	269.3084622	M3	1.657142857	1.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.16	108	0	0	NA	7qB3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.685173469	sgMsh2	cell line
chr7	105368670	105368670	A	C	ENSMUST00000217827.1	NA	ENSMUSG00000073906	missense	M/L	115	Olfr692	ENSMUST00000217827.1:c.343A>C	ENSMUSP00000151295.1:p.Met115Leu	H-2-Kb	9	9	3	IQLFFVHAL	IQMFFVHAL	NetMHCpan	43.2	24.8	0.574	135	0.185	275.107	251.953	0.916	112.84	125.35	24.8	43.2	415.0591573	450.9309038	391.0659467	424.864065	M3	2.285714286	2.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.192	135	0	0	NA	7qE3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.822208162	sgMsh2	cell line
chr7	103320651	103320651	GC	G	ENSMUST00000216456.1	5	ENSMUSG00000073952	FS	A/X	80	Olfr597	ENSMUST00000216456.1:c.243del	ENSMUSP00000150238.1:p.Met83CysfsTer18	H-2-Kb	9	14	1	CWPYFGSGL	NA	NetMHC	181.3	NA	NA	254	0.303	475.26	NA	NA	NA	181.3	NA	929.5	NA	258.291432	NA	692.2293355	M3	0.3	0.3	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.299	254	0	0	NA	7qE3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr7	102877647	102877647	T	G	ENSMUST00000098216.1	NA	ENSMUSG00000073965	missense	S/A	176	Olfr568	ENSMUST00000098216.1:c.526T>G	ENSMUSP00000095818.1:p.Ser176Ala	H-2-Kb	9	8	4	LSHAYCYHV	LSHSYCYHV	NetMHC	182.81	126.32	0.691	174	0.241	404.02	295.538	0.731	126.32	182.81	205.5	217.5	385.5760057	636.9568317	462.6472659	590.540925	M3	-0.071428571	0.214285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe	3	0.258	174	0	0	NA	7qE3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr7	103470347	103470347	T	A	ENSMUST00000213546.2	NA	ENSMUSG00000073948	missense	Y/N	103	Olfr608	ENSMUST00000213546.2:c.307T>A	ENSMUSP00000150595.1:p.Tyr103Asn	H-2-Kb	9	8	4	TQMNFIHTL	TQMYFIHTL	NetMHCpan	63.2	43.4	0.687	185	0.297	469.385	394.17	0.84	228.44	190.17	43.4	63.2	559.8993973	800.0368662	602.9065471	748.6003055	M3	0.8	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.304	185	0	0	NA	7qE3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr7	64318302	64318302	T	C	ENSMUST00000032736.10	1	ENSMUSG00000030522	missense	M/T	293	Mtmr10	ENSMUST00000032736.10:c.878T>C	ENSMUSP00000032736.4:p.Met293Thr	H-2-Kb	9	6	6	SALVRTALI	SALVRMALI	NetMHC	196.41	93.2	0.475	98	0.265	265.638	197.08	0.742	93.2	196.41	193.2	363	200.9601749	246.6664026	201.0249672	284.6098982	M3	1.842857143	1.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.273	98	90	15	0.166666667	7qC	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr7	41872661	41872661	T	C	ENSMUST00000171671.2	5	ENSMUSG00000090383	missense	I/V	4	Vmn2r58	ENSMUST00000171671.2:c.10A>G	ENSMUSP00000126966.1:p.Ile4Val	H-2-Kb	9	2	3	FWVFTFGLL	FWIFTFGLL	SMM	188.847	129.155	0.684	108	0.167	303.148	213.145	0.703	203.83	283.26	477.7	743.9	129.1546361	188.8469608	222.4590099	323.0353127	M3	2.328571429	2.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.16	108	0	0	NA	7qB3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.685173469	sgMsh2	cell line
chr7	102877647	102877647	T	G	ENSMUST00000098216.1	NA	ENSMUSG00000073965	missense	S/A	176	Olfr568	ENSMUST00000098216.1:c.526T>G	ENSMUSP00000095818.1:p.Ser176Ala	H-2-Kb	9	10	2	HAYCYHVDV	HSYCYHVDV	NetMHCpan	221.9	122.4	0.552	174	0.241	291.336	184.978	0.635	148.52	303.9	122.4	221.9	306.2739079	371.6293451	221.4369036	278.7725451	M3	0.228571429	0.228571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe	3	0.258	174	0	0	NA	7qE3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr7	103716707	103716707	A	C	ENSMUST00000215723.1	5	ENSMUSG00000094822	missense	I/L	38	Olfr243	ENSMUST00000215723.1:c.112A>C	ENSMUSP00000150329.1:p.Ile38Leu	H-2-Kb	9	7	5	CIMYLIALL	CIMYIIALL	NetMHC	393.38	822.57	2.091	222	0.185	498.487	900.185	1.806	822.57	393.38	1161.1	703.3	677.8131653	400.9682638	977.7999259	596.0051329	M3	2.614285714	2.714285714	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.198	222	0	0	NA	7qE3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.847902167	sgMsh2	cell line
chr7	103320651	103320651	GC	G	ENSMUST00000216456.1	5	ENSMUSG00000073952	FS	A/X	80	Olfr597	ENSMUST00000216456.1:c.243del	ENSMUSP00000150238.1:p.Met83CysfsTer18	H-2-Kb	9	10	5	IAPKCWPYF	IAPKMLAIF	NetMHC	406.13	600.96	1.48	254	0.303	476.17	513.348	1.078	600.96	406.13	431.2	493.7	461.4344339	485.4114317	565.2622723	466.9280884	M3	-0.571428571	0.114285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.299	254	0	0	NA	7qE3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr7	86585643	86585643	G	A	ENSMUST00000215365.1	3	ENSMUSG00000059319	missense	A/T	123	Olfr295	ENSMUST00000215365.1:c.367G>A	ENSMUSP00000150377.1:p.Ala123Thr	H-2-Kb	9	4	8	MAQDRYVTI	MAQDRYVAI	SMMPMBEC	399.255	370.894	0.929	298	0.218	423.855	403.247	0.951	327.37	419.11	435.6	428.6	454.0566075	482.0698829	370.8941642	399.2546657	M3	-0.685714286	-0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.214	298	0	0	NA	7qD3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.916419514	sgMsh2	cell line
chr7	104084873	104084873	G	A	ENSMUST00000057104.6	NA	ENSMUSG00000051340	missense	S/F	69	Olfr645	ENSMUST00000057104.6:c.206C>T	ENSMUSP00000062821.3:p.Ser69Phe	H-2-Kb	9	3	9	MYYFLSLLF	MYYFLSLLS	SMM	232.333	518.931	2.234	167	0.275	395.348	2593.63	6.56	4591.25	443.76	4080	1019.9	518.9314595	232.3325184	1107.260991	346.9365057	M3	2.128571429	2.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.267	167	0	0	NA	7qE3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr7	45897436	45897436	C	T	ENSMUST00000069772.15	1	ENSMUSG00000002781	missense	L/F	9	Tmem143	ENSMUST00000069772.15:c.25C>T	ENSMUSP00000070405.7:p.Leu9Phe	H-2-Kb	9	1	9	MTVARWLRF	MTVARWLRL	SMMPMBEC	346.937	200.563	0.578	37	0.27	447.198	172.436	0.386	144.31	476.98	90.6	447.6	264.9171047	446.7967444	200.5626226	346.9365057	M3	0.385714286	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.305	37	8	2	0.25	7qB3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr7	45091511	45091511	C	A	ENSMUST00000019683.10	1	ENSMUSG00000019539	missense	A/S	58	Rcn3	ENSMUST00000019683.10:c.172G>T	ENSMUSP00000019683.3:p.Ala58Ser	H-2-Kb	9	5	7	FQYDHESFL	FQYDHEAFL	SMM	229.145	213.85	0.933	60	0.25	356.326	221.271	0.621	196.89	536.95	277.2	442.1	213.850367	229.1447967	228.6914879	270.5515336	M3	-0.814285714	-0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.246	60	21	4	0.19047619	7qB3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr7	62377423	62377423	C	T	ENSMUST00000080403.6	NA	ENSMUSG00000056972	missense	P/L	25	Magel2	ENSMUST00000080403.6:c.74C>T	ENSMUSP00000079265.5:p.Pro25Leu	H-2-Kb	9	6	6	AVHSRLTVL	AVHSRPTVL	SMM	323.676	762.272	2.355	31	0.258	456.331	1547.221	3.391	2260.28	563.32	2655.2	676.6	762.2720572	323.6756285	834.1612282	349.3413547	M3	0.371428571	0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.267	31	0	0	NA	7qC	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr7	103470347	103470347	T	A	ENSMUST00000213546.2	NA	ENSMUSG00000073948	missense	Y/N	103	Olfr608	ENSMUST00000213546.2:c.307T>A	ENSMUSP00000150595.1:p.Tyr103Asn	H-2-Kb	9	10	2	MNFIHTLCI	MYFIHTLCI	NetMHCpan	133.6	738.3	5.526	185	0.297	337.578	698.82	2.07	1791.99	738.55	738.3	133.6	659.3408748	375.0679891	523.901932	300.0889473	M3	2.028571429	2.028571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.304	185	0	0	NA	7qE3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr7	106753224	106753224	G	A	ENSMUST00000216255.1	5	ENSMUSG00000059087	missense	L/F	55	Olfr698	ENSMUST00000216255.1:c.163C>T	ENSMUSP00000149305.1:p.Leu55Phe	H-2-Kb	9	11	1	FHVPMYLLL	LHVPMYLLL	SMM	364.007	354.087	0.973	189	0.233	437.331	366.81	0.839	843.75	808.39	334.9	438.9	354.0870144	364.0072218	379.5333991	435.7626466	M3	2.085714286	2.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	189	0	0	NA	7qE3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.967807524	sgMsh2	cell line
chr7	103561109	103561109	G	A	ENSMUST00000215673.1	5	ENSMUSG00000073947	missense	D/N	211	Olfr615	ENSMUST00000215673.1:c.631G>A	ENSMUSP00000150166.1:p.Asp211Asn	H-2-Kb	10	4	8	VIFSFGVNFL	VIFSFGVDFL	NetMHCpan	44.1	159.8	3.624	154	0.208	416.76	499.24	1.198	247.1	68.17	159.8	44.1	964.5616704	1110.017945	751.3806385	765.3498475	M3	1.271428571	2.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.22	154	0	0	NA	7qE3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.942113519	sgMsh2	cell line
chr7	112894458	112894458	A	G	ENSMUST00000059768.16	1	ENSMUSG00000055320	missense	I/M	397	Tead1	ENSMUST00000059768.16:c.1191A>G	ENSMUSP00000060671.9:p.Ile397Met	H-2-Db	9	4	8	SVLENFTML	SVLENFTIL	NetMHCpan	56.2	25.6	0.456	63	0.286	93.041	86.275	0.927	63.25	79.76	25.6	56.2	109.2999592	106.3212319	142.7479894	150.5116095	M3	0.657142857	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.271	63	90	16	0.177777778	7qF1	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr7	140336044	140336044	C	A	ENSMUST00000214858.1	5	ENSMUSG00000062782	missense	L/M	61	Olfr527	ENSMUST00000214858.1:c.181C>A	ENSMUSP00000149080.1:p.Leu61Met	H-2-Db	9	9	3	FFMVNLAIV	FFLVNLAIV	SMM	105.833	95.856	0.906	235	0.251	165.454	168.878	1.021	197.29	176.89	1124.6	642.8	95.85615401	105.8327302	140.4656069	154.0174753	M3	2.414285714	2.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.252	235	0	0	NA	7qF4	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr8	105842526	105842526	T	C	ENSMUST00000034365.4	1	ENSMUSG00000031893	missense	F/L	503	Tsnaxip1	ENSMUST00000034365.4:c.1507T>C	ENSMUSP00000034365.4:p.Phe503Leu	H-2-Kb	8	8	4	MNQLYAVL	MNQFYAVL	NetMHC	23.5	46.32	1.971	137	0.234	29.097	39.143	1.345	46.32	23.5	18.5	29.7	31.96980594	28.49311953	46.316955	38.52476516	M3	0.757142857	0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.246	137	0	0	NA	8qD3	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr7	123494884	123494884	CT	C	ENSMUST00000042470.13	1	ENSMUSG00000030757	FS	S/X	236	Zkscan2	ENSMUST00000042470.13:c.706del	ENSMUSP00000041821.7:p.Ser236ValfsTer36	H-2-Kb	8	4	8	RSFSYKKV	RSFSYKKS	NetMHC	30.43	2776.72	91.249	74	0.324	51.42	1136.705	22.106	2776.72	30.43	1968.1	41.5	268.9923939	72.56713881	305.3092764	61.33946729	M3	-0.528571429	-0.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.305	74	0	0	NA	7qF3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr7	121500719	121500719	T	C	ENSMUST00000084628.4	1	ENSMUSG00000046321	missense	Y/H	263	Hs3st2	ENSMUST00000084628.4:c.787T>C	ENSMUSP00000081678.3:p.Tyr263His	H-2-Kb	8	7	5	SWLRHFPL	SWLRYFPL	NetMHC	37.55	13.18	0.351	72	0.222	82.172	20.056	0.244	13.18	37.55	43.5	118.3	20.21808416	78.29607656	19.89481935	86.04784535	M3	0.028571429	0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.239	72	0	0	NA	7qF2	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr8	3851259	3851259	T	C	ENSMUST00000033888.4	1	ENSMUSG00000040197	missense	S/G	132	Cd209e	ENSMUST00000033888.4:c.394A>G	ENSMUSP00000033888.4:p.Ser132Gly	H-2-Kb	8	10	2	NGYTWMGL	NSYTWMGL	NetMHC	74.4	17.07	0.229	178	0.219	112.328	35.265	0.314	17.07	74.4	26.4	96.5	48.05515695	143.1330745	44.13061706	128.1563117	M3	0.285714286	0.285714286	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.222	178	0	0	NA	8qA1.1	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	0.950678188	sgMsh2	cell line
chr7	110265927	110265927	A	C	ENSMUST00000033325.8	1	ENSMUSG00000031015	missense	E/A	245	Swap70	ENSMUST00000033325.8:c.734A>C	ENSMUSP00000033325.7:p.Glu245Ala	H-2-Kb	8	6	6	SYYVSADL	SYYVSEDL	NetMHC	119.01	1764.16	14.824	97	0.196	249.798	1734.611	6.944	1764.16	119.01	1238.9	255.4	1705.061311	244.1968177	1998.664966	275.2580317	M3	0.414285714	0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.206	97	62	18	0.290322581	7qE3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.882160841	sgMsh2	cell line
chr7	140336044	140336044	C	A	ENSMUST00000214858.1	5	ENSMUSG00000062782	missense	L/M	61	Olfr527	ENSMUST00000214858.1:c.181C>A	ENSMUSP00000149080.1:p.Leu61Met	H-2-Kb	8	7	5	MYFFMVNL	MYFFLVNL	NetMHCpan	54.1	64	1.183	235	0.251	88.007	92.533	1.051	151.9	127.61	64	54.1	87.8496428	84.86722465	97.21650414	91.14650073	M3	1.528571429	1.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.252	235	0	0	NA	7qF4	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr7	127905762	127905762	T	C	ENSMUST00000071056.13	1	ENSMUSG00000030802	missense	I/T	130	Bckdk	ENSMUST00000071056.13:c.389T>C	ENSMUSP00000070345.7:p.Ile130Thr	H-2-Kb	8	10	2	YTRAFQKL	YIRAFQKL	NetMHCpan	121.7	137.9	1.133	169	0.225	139.122	142.352	1.023	95.73	131.44	137.9	121.7	146.8047136	146.8047136	188.2521739	180.6092545	M3	-0.6	-0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.208	169	198	54	0.272727273	7qF3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.890725509	sgMsh2	cell line
chr8	70174385	70174385	G	A	ENSMUST00000002413.14	1	ENSMUSG00000002342	missense	R/H	29	Tmem161a	ENSMUST00000002413.14:c.86G>A	ENSMUSP00000002413.8:p.Arg29His	H-2-Kb	8	7	5	CSFAHWLL	CSFARWLL	NetMHCpan	55.4	97.3	1.756	43	0.279	78.662	371.36	4.721	346.68	214.88	97.3	55.4	396.0408646	60.77710368	506.6872779	96.54727043	M3	1.042857143	1.042857143	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.286	43	19	9	0.473684211	8qB3.3	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr8	11518463	11518463	G	A	ENSMUST00000049461.6	1	ENSMUSG00000056228	missense	A/V	365	Cars2	ENSMUST00000049461.6:c.1094C>T	ENSMUSP00000046453.5:p.Ala365Val	H-2-Kb	8	10	2	RVYVKGQL	RAYVKGQL	NetMHC	235.36	208.02	0.884	43	0.326	311.299	309.266	0.993	208.02	235.36	272.8	302.9	425.3436955	432.2549746	345.7323355	319.6980594	M3	0.442857143	0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.337	43	14	1	0.071428571	8qA1.1	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	2	1	sgMsh2	cell line
chr7	126998574	126998574	A	G	ENSMUST00000165096.8	1	ENSMUSG00000030681	missense	V/A	124	Mvp	ENSMUST00000165096.8:c.371T>C	ENSMUSP00000127250.2:p.Val124Ala	H-2-Kb	8	5	7	ITPLQVAL	ITPLQVVL	SMM	208.324	490.614	2.355	84	0.274	361.112	827.469	2.291	2006.7	401.05	932.6	459.9	490.6140712	208.324333	722.337231	321.1737185	M3	1.114285714	1.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.275	84	151	34	0.225165563	7qF3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr8	93271855	93271855	C	T	ENSMUST00000034178.8	1	ENSMUSG00000031725	missense	R/H	171	Ces1f	ENSMUST00000034178.8:c.512G>A	ENSMUSP00000034178.8:p.Arg171His	H-2-Kb	8	5	7	VVAIQYHL	VVAIQYRL	NetMHCpan	194.2	249.4	1.284	147	0.177	418.703	352.353	0.842	390.12	430.27	249.4	194.2	314.5864409	407.1364636	559.4225905	707.5220838	M3	0.9	0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.188	147	0	0	NA	8qC5	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	0.805078826	sgMsh2	cell line
chr7	112894458	112894458	A	G	ENSMUST00000059768.16	1	ENSMUSG00000055320	missense	I/M	397	Tead1	ENSMUST00000059768.16:c.1191A>G	ENSMUSP00000060671.9:p.Ile397Met	H-2-Kb	8	5	7	VLENFTML	VLENFTIL	SMMPMBEC	161.711	473.958	2.931	63	0.286	278.293	630.111	2.264	1938.31	461.24	683.8	334.9	576.4212727	221.6868845	473.9581548	161.7111628	M3	0.657142857	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.271	63	90	16	0.177777778	7qF1	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr8	12812332	12812332	A	G	ENSMUST00000091237.11	1	ENSMUSG00000031441	missense	I/M	61	Atp11a	ENSMUST00000091237.11:c.183A>G	ENSMUSP00000088779.5:p.Ile61Met	H-2-Kb	8	8	4	WNFMPKNL	WNFIPKNL	SMMPMBEC	260.459	296.306	1.138	197	0.208	332.995	416.103	1.25	868.92	618.87	535.9	372.4	268.9923939	293.5891489	296.3056959	260.4593785	M3	-0.571428571	-0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.211	197	63	19	0.301587302	8qA1.1	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	0.903572512	sgMsh2	cell line
chr8	71684012	71684012	AG	A	ENSMUST00000051995.13	1	ENSMUSG00000031805	FS	E/X	654	Jak3	ENSMUST00000051995.13:c.1967del	ENSMUSP00000060073.7:p.Gly656ValfsTer10	H-2-Kb	8	13	1	VMGIHLSL	NA	NetMHCpan	418.4	NA	NA	70	0.2	495.285	NA	NA	NA	641.33	NA	418.4	NA	483.8825938	NA	506.6872779	M3	1.371428571	1.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.217	70	19	1	0.052631579	8qB3.3	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	0.929266517	sgMsh2	cell line
chr7	127051630	127051630	A	G	ENSMUST00000205424.1	2	ENSMUSG00000049350	missense	V/A	62	Zg16	ENSMUST00000205424.1:c.185T>C	ENSMUSP00000145876.1:p.Val62Ala	H-2-Kb	9	5	7	VNRYYIAGL	VNRYYIVGL	NetMHC	8.72	32.43	3.719	180	0.217	35.986	58.881	1.636	32.43	8.72	19.1	12.8	85.33162183	59.17114865	94.67820161	69.86344547	M3	0.371428571	0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.208	180	0	0	NA	7qF3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.890725509	sgMsh2	cell line
chr7	110265927	110265927	A	C	ENSMUST00000033325.8	1	ENSMUSG00000031015	missense	E/A	245	Swap70	ENSMUST00000033325.8:c.734A>C	ENSMUSP00000033325.7:p.Glu245Ala	H-2-Kb	9	5	7	ISYYVSADL	ISYYVSEDL	NetMHC	15.38	121.04	7.87	97	0.196	76.906	220.722	2.87	121.04	15.38	154.2	25.8	311.2504586	135.2415065	287.2433612	128.0117987	M3	0.414285714	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.206	97	62	18	0.290322581	7qE3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.882160841	sgMsh2	cell line
chr7	112894458	112894458	A	G	ENSMUST00000059768.16	1	ENSMUSG00000055320	missense	I/M	397	Tead1	ENSMUST00000059768.16:c.1191A>G	ENSMUSP00000060671.9:p.Ile397Met	H-2-Kb	9	4	8	SVLENFTML	SVLENFTIL	NetMHC	37.75	108.04	2.862	63	0.286	129.396	187.961	1.453	108.04	37.75	126.4	65.1	249.5226649	193.6912491	309.920283	217.3952246	M3	0.657142857	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.271	63	90	16	0.177777778	7qF1	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr8	12812332	12812332	A	G	ENSMUST00000091237.11	1	ENSMUSG00000031441	missense	I/M	61	Atp11a	ENSMUST00000091237.11:c.183A>G	ENSMUSP00000088779.5:p.Ile61Met	H-2-Kb	9	3	9	SKYTFWNFM	SKYTFWNFI	NetMHC	57.07	114.61	2.008	197	0.208	94.704	167.079	1.764	114.61	57.07	120.8	76.4	213.3585248	113.0082111	230.8075441	135.2851103	M3	0.157142857	0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.211	197	63	19	0.301587302	8qA1.1	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	0.903572512	sgMsh2	cell line
chr8	93271855	93271855	C	T	ENSMUST00000034178.8	1	ENSMUSG00000031725	missense	R/H	171	Ces1f	ENSMUST00000034178.8:c.512G>A	ENSMUSP00000034178.8:p.Arg171His	H-2-Kb	9	6	6	VAIQYHLSI	VAIQYRLSI	NetMHCpan	28.2	72.9	2.585	147	0.177	115.725	207.541	1.793	125.18	57.57	72.9	28.2	342.0660715	227.0439846	289.9011913	173.8801475	M3	0.571428571	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.188	147	0	0	NA	8qC5	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	0.805078826	sgMsh2	cell line
chr7	118543426	118543426	T	C	ENSMUST00000044195.5	1	ENSMUSG00000042246	missense	S/G	580	Tmc7	ENSMUST00000044195.5:c.1738A>G	ENSMUSP00000046927.4:p.Ser580Gly	H-2-Kb	9	4	8	IFYVKELGL	IFYVKELSL	SMM	58.359	65.48	1.122	102	0.225	68.619	75.602	1.102	72.09	59.39	106.1	128.9	65.48020042	58.35929005	79.11339102	77.84845538	M3	0.385714286	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.236	102	3	1	0.333333333	7qF1	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr7	140336044	140336044	C	A	ENSMUST00000214858.1	5	ENSMUSG00000062782	missense	L/M	61	Olfr527	ENSMUST00000214858.1:c.181C>A	ENSMUSP00000149080.1:p.Leu61Met	H-2-Kb	9	6	6	PMYFFMVNL	PMYFFLVNL	SMM	27.046	20.659	0.764	235	0.251	58.129	61.772	1.063	94.62	83.88	106.9	97.4	20.65903351	27.04643321	28.92344371	32.3779986	M3	1.528571429	1.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.252	235	0	0	NA	7qF4	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr8	105842526	105842526	T	C	ENSMUST00000034365.4	1	ENSMUSG00000031893	missense	F/L	503	Tsnaxip1	ENSMUST00000034365.4:c.1507T>C	ENSMUSP00000034365.4:p.Phe503Leu	H-2-Kb	9	7	5	IMNQLYAVL	IMNQFYAVL	NetMHCpan	84.5	13.7	0.162	137	0.234	96.352	21.513	0.223	11.77	97.15	13.7	84.5	33.04532291	121.3696222	29.32580889	95.55424822	M3	0.757142857	0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.246	137	0	0	NA	8qD3	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr7	123494884	123494884	CT	C	ENSMUST00000042470.13	1	ENSMUSG00000030757	FS	S/X	236	Zkscan2	ENSMUST00000042470.13:c.706del	ENSMUSP00000041821.7:p.Ser236ValfsTer36	H-2-Kb	9	10	2	KVYSKFRRT	NA	NetMHC	114.02	NA	NA	74	0.324	255.735	NA	NA	NA	114.02	NA	355.4	NA	222.8999649	NA	288.5692163	M3	-1.842857143	-1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.305	74	0	0	NA	7qF3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr7	117549082	117549082	T	C	ENSMUST00000032892.6	1	ENSMUSG00000030657	missense	F/L	294	Xylt1	ENSMUST00000032892.6:c.880T>C	ENSMUSP00000032892.5:p.Phe294Leu	H-2-Kb	9	3	9	LMPEKVARL	LMPEKVARF	NetMHC	173.46	659.31	3.801	69	0.145	295.639	583.799	1.975	659.31	173.46	988.5	403.9	508.2881677	301.3769268	501.4758232	289.9011913	M3	-0.528571429	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.175	69	0	0	NA	7qF1	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.749408481	sgMsh2	cell line
chr7	121500719	121500719	T	C	ENSMUST00000084628.4	1	ENSMUSG00000046321	missense	Y/H	263	Hs3st2	ENSMUST00000084628.4:c.787T>C	ENSMUSP00000081678.3:p.Tyr263His	H-2-Kb	9	6	6	ESWLRHFPL	ESWLRYFPL	NetMHCpan	163.3	62.2	0.381	72	0.222	193.474	60.222	0.311	49.75	201.06	62.2	163.3	69.20062231	242.1642333	58.24383998	185.8874201	M3	0.028571429	0.028571429	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.239	72	0	0	NA	7qF2	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr7	135152261	135152261	C	T	ENSMUST00000084488.4	5	ENSMUSG00000058325	missense	A/V	1589	Dock1	ENSMUST00000084488.4:c.4766C>T	ENSMUSP00000081531.4:p.Ala1589Val	H-2-Kb	9	11	1	VLRPFHERM	ALRPFHERM	NetMHCpan	84.2	315.4	3.746	74	0.176	423.221	1393.102	3.292	1094.79	233.74	315.4	84.2	1897.186388	638.4251688	1691.414308	612.7029904	M3	-1.8	-0.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.189	74	77	17	0.220779221	7qF3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.80936116	sgMsh2	cell line
chr7	121500719	121500719	T	C	ENSMUST00000084628.4	1	ENSMUSG00000046321	missense	Y/H	263	Hs3st2	ENSMUST00000084628.4:c.787T>C	ENSMUSP00000081678.3:p.Tyr263His	H-2-Kb	9	7	5	SWLRHFPLA	SWLRYFPLA	SMM	266.14	213.359	0.802	72	0.222	344.75	238.779	0.693	209.94	300.23	264.2	640.1	213.3585248	266.1399065	309.920283	389.2691619	M3	0.414285714	0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.239	72	0	0	NA	7qF2	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr7	140336044	140336044	C	A	ENSMUST00000214858.1	5	ENSMUSG00000062782	missense	L/M	61	Olfr527	ENSMUST00000214858.1:c.181C>A	ENSMUSP00000149080.1:p.Leu61Met	H-2-Kb	9	4	8	HTPMYFFMV	HTPMYFFLV	NetMHCpan	201.1	175.6	0.873	235	0.251	470.61	422.008	0.897	322.69	307.19	175.6	201.1	521.3267383	634.0302809	641.5787927	693.8250889	M3	1.528571429	1.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.252	235	0	0	NA	7qF4	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr7	128682320	128682320	T	C	ENSMUST00000043138.12	1	ENSMUSG00000042105	missense	Y/H	548	Inpp5f	ENSMUST00000043138.12:c.1642T>C	ENSMUSP00000045910.6:p.Tyr548His	H-2-Kb	9	8	4	ANRHYLSRF	ANRYYLSRF	SMM	213.359	159.628	0.748	152	0.211	273.396	175.803	0.643	148.49	318.1	293.9	583.8	159.628341	213.3585248	191.9773533	228.6914879	M3	-1.1	-1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.221	152	38	12	0.315789474	7qF3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.946395853	sgMsh2	cell line
chr8	105842526	105842526	T	C	ENSMUST00000034365.4	1	ENSMUSG00000031893	missense	F/L	503	Tsnaxip1	ENSMUST00000034365.4:c.1507T>C	ENSMUSP00000034365.4:p.Phe503Leu	H-2-Kb	9	8	4	MNQLYAVLM	MNQFYAVLM	NetMHCpan	308.2	218.5	0.709	137	0.234	491.947	567.121	1.153	489.91	383.95	218.5	308.2	644.3324442	599.9430132	729.8775406	767.8033453	M3	1.528571429	1.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.246	137	0	0	NA	8qD3	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr9	38368241	38368241	C	T	ENSMUST00000052085.1	NA	ENSMUSG00000049864	missense	L/F	232	Olfr250	ENSMUST00000052085.1:c.694C>T	ENSMUSP00000051631.1:p.Leu232Phe	H-2-Db	9	7	5	YALIFVNVI	YALILVNVI	NetMHC	68.36	31.31	0.458	150	0.24	328.506	149.279	0.454	31.31	68.36	145.6	288.4	193.9188379	500.7488954	152.9572264	368.6124504	M3	2.928571429	2.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.231	150	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.989219195	sgMsh2	cell line
chr9	36743507	36743507	A	T	ENSMUST00000120381.8	1	ENSMUSG00000032116	missense	I/N	488	Stt3a	ENSMUST00000120381.8:c.1463T>A	ENSMUSP00000113116.1:p.Ile488Asn	H-2-Db	9	7	5	SSPSNVLSA	SSPSIVLSA	NetMHC	215.14	29006.74	134.827	78	0.154	399.173	26766.18	67.054	29006.74	215.14	9763.2	280	24525.62028	518.3462966	33850.88286	692.7395769	M3	0.442857143	0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.137	78	390	111	0.284615385	9qA4	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.586679782	sgMsh2	cell line
chr9	39184623	39184623	T	G	ENSMUST00000071617.5	3	ENSMUSG00000094970	missense	I/M	148	Olfr943	ENSMUST00000071617.5:c.444T>G	ENSMUSP00000071545.5:p.Ile148Met	H-2-Db	9	8	4	TSLMLGVYI	TSLILGVYI	NetMHC	237.86	368.7	1.55	200	0.22	315.564	360.381	1.142	368.7	237.86	1437.9	872.3	352.0626876	341.6803474	292.799277	289.4476314	M3	2.357142857	2.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.223	200	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.954960522	sgMsh2	cell line
chr8	123200246	123200246	CA	C	ENSMUST00000019422.5	1	ENSMUSG00000019278	FS	N/X	270	Dpep1	ENSMUST00000019422.5:c.809del	ENSMUSP00000019422.4:p.Asn270ThrfsTer55	H-2-Db	9	45	0	IMMVLLCFL	NA	SMM	225.227	NA	NA	79	0.228	296.801	NA	NA	NA	330.23	NA	2081.1	NA	225.2267655	NA	263.3722415	M3	3.257142857	3.257142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.237	79	0	0	NA	8qE1	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr9	42377887	42377887	A	G	ENSMUST00000042190.13	1	ENSMUSG00000037705	missense	C/R	461	Tecta	ENSMUST00000042190.13:c.1381T>C	ENSMUSP00000040262.7:p.Cys461Arg	H-2-Db	9	11	1	RGNYNKNPL	CGNYNKNPL	SMMPMBEC	308.724	530.359	1.718	56	0.214	403.896	622.878	1.542	1012.3	429.68	665.5	809.3	580.2564812	378.111599	530.3590695	308.7237209	M3	-1.928571429	-1.928571429	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.17	56	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.72799681	sgMsh2	cell line
chr8	123199101	123199101	A	G	ENSMUST00000019422.5	1	ENSMUSG00000019278	missense	I/M	98	Dpep1	ENSMUST00000019422.5:c.294A>G	ENSMUSP00000019422.4:p.Ile98Met	H-2-Db	9	10	2	RMLEQMDVI	RILEQMDVI	SMMPMBEC	318.105	2210.905	6.95	92	0.217	496.966	3897.91	7.843	10393.67	543.51	4023.4	674.5	3772.419664	450.4224204	2210.904583	318.1046371	M3	0.557142857	0.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.207	92	0	0	NA	8qE1	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	0.886443175	sgMsh2	cell line
chr9	21956858	21956858	C	T	ENSMUST00000053583.6	1	ENSMUSG00000051238	missense	A/V	142	Swsap1	ENSMUST00000053583.6:c.425C>T	ENSMUSP00000060331.5:p.Ala142Val	H-2-Db	9	3	9	AALLLDTAV	AALLLDTAA	SMM	205.409	460.914	2.244	99	0.242	431.98	2587.809	5.991	4590.06	611.28	5822.4	1244.9	460.9141064	205.4092515	585.5581095	252.6794949	M3	1.885714286	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.244	99	12	1	0.083333333	9qA3	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr9	7171000	7171000	A	G	ENSMUST00000140466.7	5	ENSMUSG00000047193	missense	Y/H	210	Dync2h1	ENSMUST00000140466.7:c.628T>C	ENSMUSP00000120007.1:p.Tyr210His	H-2-Kb	8	6	6	ISREFHNL	ISREFYNL	NetMHC	4.75	3.13	0.659	101	0.198	5.557	4.132	0.744	3.13	4.75	5.5	8	3.481288376	4.794463315	4.783436356	6.320333573	M3	-1.271428571	-1.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.191	101	6	1	0.166666667	9qA1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.817925828	sgMsh2	cell line
chr9	27323251	27323251	G	A	ENSMUST00000133213.2	5	ENSMUSG00000034275	missense	G/R	471	Igsf9b	ENSMUST00000133213.2:c.1411G>A	ENSMUSP00000117017.1:p.Gly471Arg	H-2-Kb	8	11	1	RSLQFRAL	GSLQFRAL	NetMHC	6.89	35.54	5.158	82	0.207	12.78	40.039	3.133	35.54	6.89	78.3	23.6	44.53895263	11.79614222	35.46010359	13.76385219	M3	0.485714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.224	82	3	0	0	9qA4	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.959242856	sgMsh2	cell line
chr9	14464244	14464244	CT	C	ENSMUST00000058796.6	1	ENSMUSG00000053914	FS	K/X	106	Kdm4d	ENSMUST00000058796.6:c.317del	ENSMUSP00000061632.6:p.Lys106SerfsTer62	H-2-Kb	8	33	0	MSHRFMVL	NA	NetMHC	10.85	NA	NA	117	0.282	15.839	NA	NA	NA	10.85	NA	11.6	NA	20.07890385	NA	21.56453014	M3	0.6	0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.299	117	0	0	NA	9qA2	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr9	39819815	39819815	A	G	ENSMUST00000215922.1	3	ENSMUSG00000095774	missense	M/V	59	Olfr970	ENSMUST00000215922.1:c.175A>G	ENSMUSP00000150325.1:p.Met59Val	H-2-Kb	8	11	1	VYYFLSSL	MYYFLSSL	NetMHCpan	10.7	21.8	2.037	207	0.203	46.139	104.061	2.255	83.17	33.7	21.8	10.7	124.9510759	58.5787365	143.7937467	67.8797134	M3	0.885714286	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.206	207	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.882160841	sgMsh2	cell line
chr9	38368241	38368241	C	T	ENSMUST00000052085.1	NA	ENSMUSG00000049864	missense	L/F	232	Olfr250	ENSMUST00000052085.1:c.694C>T	ENSMUSP00000051631.1:p.Leu232Phe	H-2-Kb	8	5	7	SSYALIFV	SSYALILV	NetMHC	35.19	31.57	0.897	150	0.24	70.495	88.305	1.253	31.57	35.19	86.3	100.8	90.31086459	59.94321055	116.0753495	81.04757034	M3	2.142857143	2.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.231	150	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.989219195	sgMsh2	cell line
chr9	38368241	38368241	C	T	ENSMUST00000052085.1	NA	ENSMUSG00000049864	missense	L/F	232	Olfr250	ENSMUST00000052085.1:c.694C>T	ENSMUSP00000051631.1:p.Leu232Phe	H-2-Kb	8	7	5	YALIFVNV	YALILVNV	NetMHC	39.78	1223.77	30.763	150	0.24	90.091	1140.658	12.661	1223.77	39.78	1212.9	90.7	943.4958625	89.4828896	1068.415057	100.1705365	M3	2.542857143	2.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.231	150	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.989219195	sgMsh2	cell line
chr9	44333095	44333095	A	C	ENSMUST00000054708.4	1	ENSMUSG00000032123	missense	Q/H	402	Dpagt1	ENSMUST00000054708.4:c.1206A>C	ENSMUSP00000056282.3:p.Gln402His	H-2-Kb	8	8	6	FSIRYHLV	FSIRYQLV	NetMHC	46.29	25.9	0.56	125	0.256	72.129	87.371	1.211	25.9	46.29	67.9	59	106.8415057	85.25895396	121.2662646	89.07175307	M3	0.385714286	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.263	125	71	18	0.253521127	9qA5.2	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr9	38430465	38430465	A	T	ENSMUST00000216644.1	5	ENSMUSG00000052058	missense	Y/F	61	Olfr901	ENSMUST00000216644.1:c.182A>T	ENSMUSP00000150506.1:p.Tyr61Phe	H-2-Kb	8	10	2	MFYFLFNL	MYYFLFNL	SMM	13.764	50.786	3.69	330	0.233	36.424	58.082	1.595	83.97	53.09	54.4	63.9	50.78553127	13.76385219	61.76465217	19.75786438	M3	1.6	1.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.234	330	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr8	123200246	123200246	CA	C	ENSMUST00000019422.5	1	ENSMUSG00000019278	FS	N/X	270	Dpep1	ENSMUST00000019422.5:c.809del	ENSMUSP00000019422.4:p.Asn270ThrfsTer55	H-2-Kb	8	5	7	MVNFFSTL	MVNFFSNF	NetMHCpan	19.1	114.7	6.005	79	0.228	58.936	264.197	4.483	222.38	56.25	114.7	19.1	337.0854446	61.62259741	306.013087	69.6209588	M3	1.228571429	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.237	79	0	0	NA	8qE1	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr9	39319155	39319155	A	C	ENSMUST00000216132.1	5	ENSMUSG00000057349	missense	V/G	153	Olfr948	ENSMUST00000216132.1:c.458T>G	ENSMUSP00000149422.1:p.Val153Gly	H-2-Kb	8	5	7	GVYIYAGF	GVYIYAVF	NetMHC	58.46	379.74	6.496	226	0.239	96.387	308.095	3.196	379.74	58.46	167.6	65.5	438.2682402	247.0244836	236.4503711	127.2740898	M3	1.471428571	1.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.24	226	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr9	39819815	39819815	A	G	ENSMUST00000215922.1	3	ENSMUSG00000095774	missense	M/V	59	Olfr970	ENSMUST00000215922.1:c.175A>G	ENSMUSP00000150325.1:p.Met59Val	H-2-Kb	8	4	8	SSHLHTPV	SSHLHTPM	NetMHC	61.36	50.46	0.822	207	0.203	145.171	151.98	1.047	50.46	61.36	145.2	184.7	158.7596015	141.4946437	160.9681675	148.8469706	M3	-0.214285714	-0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.206	207	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.882160841	sgMsh2	cell line
chr9	9180096	9180096	GA	G	ENSMUST00000093893.11	1	ENSMUSG00000050730	FS	S/X	61	Arhgap42	ENSMUST00000093893.11:c.181del	ENSMUSP00000091419.4:p.Ser61ProfsTer27	H-2-Kb	8	6	6	AVQKFPSL	AVQKFSQS	NetMHCpan	56.4	11065.3	196.193	99	0.293	117.909	6487.005	55.017	11389.22	73.36	11065.3	56.4	1485.04632	162.4575876	1908.710225	176.9049561	M3	0.142857143	0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.303	99	28	6	0.214285714	9qA1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr8	123200246	123200246	CA	C	ENSMUST00000019422.5	1	ENSMUSG00000019278	FS	N/X	270	Dpep1	ENSMUST00000019422.5:c.809del	ENSMUSP00000019422.4:p.Asn270ThrfsTer55	H-2-Kb	8	30	0	TSRRWQAL	NA	NetMHC	100.21	NA	NA	79	0.228	107.878	NA	NA	NA	100.21	NA	460.2	NA	104.6501849	NA	111.1066364	M3	-1.228571429	-1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.237	79	0	0	NA	8qE1	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr9	38430465	38430465	A	T	ENSMUST00000216644.1	5	ENSMUSG00000052058	missense	Y/F	61	Olfr901	ENSMUST00000216644.1:c.182A>T	ENSMUSP00000150506.1:p.Tyr61Phe	H-2-Kb	8	7	5	HTPMFYFL	HTPMYYFL	NetMHCpan	77.2	108.3	1.403	330	0.233	120.766	151.127	1.251	132.14	102.94	108.3	77.2	190.8710225	155.5034397	170.1139779	138.5925865	M3	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.234	330	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr9	21956858	21956858	C	T	ENSMUST00000053583.6	1	ENSMUSG00000051238	missense	A/V	142	Swsap1	ENSMUST00000053583.6:c.425C>T	ENSMUSP00000060331.5:p.Ala142Val	H-2-Kb	8	10	2	AVFFSHRL	AAFFSHRL	NetMHCpan	23.2	24.6	1.06	99	0.242	130.628	116.333	0.891	108.86	137.51	24.6	23.2	123.8055176	125.8171954	146.4670721	135.4378341	M3	0.728571429	0.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.244	99	12	1	0.083333333	9qA3	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr9	39819815	39819815	A	G	ENSMUST00000215922.1	3	ENSMUSG00000095774	missense	M/V	59	Olfr970	ENSMUST00000215922.1:c.175A>G	ENSMUSP00000150325.1:p.Met59Val	H-2-Kb	8	8	4	HTPVYYFL	HTPMYYFL	NetMHCpan	118	108.3	0.918	207	0.203	156.094	151.127	0.968	132.14	151.22	108.3	118	190.8710225	160.9681675	170.1139779	162.832091	M3	0.842857143	0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.206	207	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.882160841	sgMsh2	cell line
chr9	39258136	39258136	A	C	ENSMUST00000076903.2	NA	ENSMUSG00000063380	missense	C/G	182	Olfr945	ENSMUST00000076903.2:c.544T>G	ENSMUSP00000076169.2:p.Cys182Gly	H-2-Kb	8	6	6	INHYFGDI	INHYFCDI	NetMHCpan	102	90.9	0.891	208	0.409	276.289	313.213	1.134	217.41	182.12	90.9	102	466.380088	456.8146256	409.0157201	370.458872	M3	-0.657142857	-0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.424	208	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	2	1	sgMsh2	cell line
chr9	44333095	44333095	A	C	ENSMUST00000054708.4	1	ENSMUSG00000032123	missense	Q/H	402	Dpagt1	ENSMUST00000054708.4:c.1206A>C	ENSMUSP00000056282.3:p.Gln402His	H-2-Kb	8	10	4	IRYHLVRL	IRYQLVRL	SMMPMBEC	89.896	62.05	0.69	125	0.256	146.157	90.077	0.616	114.73	189.1	280.1	212.5	65.42443789	103.2143305	62.04974485	89.89592386	M3	-0.242857143	-0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.263	125	71	18	0.253521127	9qA5.2	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr9	39184623	39184623	T	G	ENSMUST00000071617.5	3	ENSMUSG00000094970	missense	I/M	148	Olfr943	ENSMUST00000071617.5:c.444T>G	ENSMUSP00000071545.5:p.Ile148Met	H-2-Kb	8	5	7	QIYTSLML	QIYTSLIL	NetMHC	199.22	851.53	4.274	200	0.22	279.862	752.265	2.688	851.53	199.22	653	314.4	637.88149	245.323979	1249.510759	426.324214	M3	1.6	1.6	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.223	200	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.954960522	sgMsh2	cell line
chr9	55859035	55859035	A	G	ENSMUST00000037408.8	5	ENSMUSG00000034007	missense	S/P	486	Scaper	ENSMUST00000037408.8:c.1456T>C	ENSMUSP00000043411.8:p.Ser486Pro	H-2-Kb	8	5	7	LSFCGVPL	LSFCGVSL	NetMHCpan	105.4	186	1.765	114	0.132	131.862	273.904	2.077	509.51	216.74	186	105.4	320.4350395	155.1457917	227.3735801	108.5775406	M3	1.5	1.5	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.155	114	47	5	0.106382979	9qB	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.663761798	sgMsh2	cell line
chr9	21589965	21589965	A	T	ENSMUST00000034700.14	1	ENSMUSG00000032182	missense	S/T	236	Yipf2	ENSMUST00000034700.14:c.706T>A	ENSMUSP00000034700.7:p.Ser236Thr	H-2-Kb	8	8	4	LALTAAGL	LALSAAGL	NetMHC	241.92	271.62	1.123	63	0.27	348.652	375.733	1.078	271.62	241.92	423.5	371	385.2476516	357.8821189	366.2182643	339.4220093	M3	1.7	1.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.277	63	30	6	0.2	9qA3	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr9	19808619	19808619	G	T	ENSMUST00000217280.1	5	ENSMUSG00000095448	missense	Q/H	100	Olfr859	ENSMUST00000217280.1:c.300G>T	ENSMUSP00000151076.1:p.Gln100His	H-2-Kb	8	10	2	THVSFFIL	TQVSFFIL	NetMHCpan	197.8	154.3	0.78	424	0.236	380.489	316.456	0.832	294.27	373.06	154.3	197.8	338.6413603	387.9180607	350.5419514	430.2689433	M3	2.014285714	2.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.237	424	0	0	NA	9qA3	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr9	38368241	38368241	C	T	ENSMUST00000052085.1	NA	ENSMUSG00000049864	missense	L/F	232	Olfr250	ENSMUST00000052085.1:c.694C>T	ENSMUSP00000051631.1:p.Leu232Phe	H-2-Kb	8	10	2	IFVNVIHL	ILVNVIHL	SMM	322.656	947.851	2.938	150	0.24	375.758	885.748	2.357	1466.77	381.91	789.2	396.7	947.8508415	322.6561891	823.6448742	369.6068402	M3	1.828571429	1.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.231	150	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.989219195	sgMsh2	cell line
chr8	123200246	123200246	CA	C	ENSMUST00000019422.5	1	ENSMUSG00000019278	FS	N/X	270	Dpep1	ENSMUST00000019422.5:c.809del	ENSMUSP00000019422.4:p.Asn270ThrfsTer55	H-2-Kb	8	4	8	VMVNFFST	VMVNFFSN	NetMHCpan	308.8	416	1.347	79	0.228	457.833	367.409	0.802	351.34	385.1	416	308.8	315.3116375	775.7825382	383.4775994	530.5667136	M3	0.957142857	1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.237	79	0	0	NA	8qE1	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr9	54628565	54628565	A	G	ENSMUST00000138315.1	3	ENSMUSG00000032281	missense	V/A	51	Acsbg1	ENSMUST00000138315.1:c.152T>C	ENSMUSP00000118133.1:p.Val51Ala	H-2-Kb	8	5	7	CAWNLSAL	CAWNLSVL	NetMHCpan	288.1	607.2	2.108	91	0.297	380.756	906.753	2.381	1552.12	410.97	607.2	288.1	825.5435717	350.5419514	987.9614526	439.2785529	M3	0.857142857	0.857142857	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.302	91	124	33	0.266129032	9qA5.3	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr9	14464244	14464244	CT	C	ENSMUST00000058796.6	1	ENSMUSG00000053914	FS	K/X	106	Kdm4d	ENSMUST00000058796.6:c.317del	ENSMUSP00000061632.6:p.Lys106SerfsTer62	H-2-Kb	8	63	0	KTYWNRNV	NA	SMM	220.161	NA	NA	117	0.282	287.732	NA	NA	NA	506.68	NA	327.3	NA	220.1608027	NA	248.1646968	M3	-1.457142857	-1.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.299	117	0	0	NA	9qA2	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr9	45672814	45672814	A	G	ENSMUST00000034592.9	1	ENSMUSG00000032087	missense	S/G	526	Dscaml1	ENSMUST00000034592.9:c.1576A>G	ENSMUSP00000034592.8:p.Ser526Gly	H-2-Kb	8	8	4	TTIGHMNV	TTISHMNV	SMM	358.707	155.862	0.435	47	0.106	484.318	174.694	0.361	100.18	520.16	336.8	899.6	155.8619122	358.7071224	193.5263029	448.476819	M3	0.4	0.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2	2	0.135	47	2	0	0	9qA5.2	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.578115114	sgMsh2	cell line
chr8	123200246	123200246	CA	C	ENSMUST00000019422.5	1	ENSMUSG00000019278	FS	N/X	270	Dpep1	ENSMUST00000019422.5:c.809del	ENSMUSP00000019422.4:p.Asn270ThrfsTer55	H-2-Kb	9	4	8	VMVNFFSTL	VMVNFFSNF	NetMHCpan	4.4	12	2.727	79	0.228	9.947	16.668	1.676	10.15	4.79	12	4.4	21.33585248	15.10462682	26.86890699	18.58874201	M3	1.228571429	1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.237	79	0	0	NA	8qE1	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr9	39819815	39819815	A	G	ENSMUST00000215922.1	3	ENSMUSG00000095774	missense	M/V	59	Olfr970	ENSMUST00000215922.1:c.175A>G	ENSMUSP00000150325.1:p.Met59Val	H-2-Kb	9	10	2	PVYYFLSSL	PMYYFLSSL	SMM	35.165	16.222	0.461	207	0.203	46.13	35.595	0.772	45.21	53.06	42.4	39.2	16.22220929	35.16494966	28.79055255	58.51268133	M3	0.885714286	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.206	207	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.882160841	sgMsh2	cell line
chr9	9180096	9180096	GA	G	ENSMUST00000093893.11	1	ENSMUSG00000050730	FS	S/X	61	Arhgap42	ENSMUST00000093893.11:c.181del	ENSMUSP00000091419.4:p.Ser61ProfsTer27	H-2-Kb	9	5	7	MAVQKFPSL	MAVQKFSQS	NetMHC	53.32	4058.82	76.122	99	0.293	124.504	2384.403	19.151	4058.82	53.32	4485.7	55.7	636.9568317	206.5903351	709.9863514	193.3080768	M3	0.142857143	0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.303	99	28	6	0.214285714	9qA1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr9	21956858	21956858	C	T	ENSMUST00000053583.6	1	ENSMUSG00000051238	missense	A/V	142	Swsap1	ENSMUST00000053583.6:c.425C>T	ENSMUSP00000060331.5:p.Ala142Val	H-2-Kb	9	9	3	TAVFFSHRL	TAAFFSHRL	NetMHCpan	30.6	58.4	1.908	99	0.242	133.034	172.096	1.294	124.35	68.32	58.4	30.6	219.8416627	197.7470439	294.6117067	228.6914879	M3	0.728571429	0.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.244	99	12	1	0.083333333	9qA3	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr9	44333095	44333095	A	C	ENSMUST00000054708.4	1	ENSMUSG00000032123	missense	Q/H	402	Dpagt1	ENSMUST00000054708.4:c.1206A>C	ENSMUSP00000056282.3:p.Gln402His	H-2-Kb	9	9	5	SIRYHLVRL	SIRYQLVRL	NetMHC	72.21	244.4	3.385	125	0.256	145.776	454.768	3.12	244.4	72.21	546.9	165.9	396.378418	135.865753	513.1566957	155.6861575	M3	-0.242857143	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.263	125	71	18	0.253521127	9qA5.2	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr9	39184623	39184623	T	G	ENSMUST00000071617.5	3	ENSMUSG00000094970	missense	I/M	148	Olfr943	ENSMUST00000071617.5:c.444T>G	ENSMUSP00000071545.5:p.Ile148Met	H-2-Kb	9	3	9	SSQIYTSLM	SSQIYTSLI	NetMHC	79.33	157.47	1.985	200	0.22	233.471	430.395	1.843	157.47	79.33	299.6	169.7	561.1900987	297.2418804	608.4851727	356.6563823	M3	0.557142857	0.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.223	200	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.954960522	sgMsh2	cell line
chr9	38430465	38430465	A	T	ENSMUST00000216644.1	5	ENSMUSG00000052058	missense	Y/F	61	Olfr901	ENSMUST00000216644.1:c.182A>T	ENSMUSP00000150506.1:p.Tyr61Phe	H-2-Kb	9	9	3	PMFYFLFNL	PMYYFLFNL	SMM	27.36	17.026	0.622	330	0.233	82.941	49.519	0.597	66.51	116.65	86.7	137.9	17.02589693	27.35961615	32.52744865	49.23228579	M3	1.6	1.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.234	330	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr9	39319155	39319155	A	C	ENSMUST00000216132.1	5	ENSMUSG00000057349	missense	V/G	153	Olfr948	ENSMUST00000216132.1:c.458T>G	ENSMUSP00000149422.1:p.Val153Gly	H-2-Kb	9	4	8	SGVYIYAGF	SGVYIYAVF	NetMHCpan	124	253.4	2.044	226	0.239	358.631	781.651	2.18	910.28	158.65	253.4	124	853.3162183	558.6116644	709.9863514	570.4925797	M3	1.471428571	1.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.24	226	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr9	38368241	38368241	C	T	ENSMUST00000052085.1	NA	ENSMUSG00000049864	missense	L/F	232	Olfr250	ENSMUST00000052085.1:c.694C>T	ENSMUSP00000051631.1:p.Leu232Phe	H-2-Kb	9	9	3	LIFVNVIHL	LILVNVIHL	NetMHC	168.82	706.84	4.187	150	0.24	284.247	934.768	3.289	706.84	168.82	1075.9	238.8	924.9324152	329.6932077	944.6044779	340.6042008	M3	1.828571429	2.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.231	150	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.989219195	sgMsh2	cell line
chr9	44333095	44333095	A	C	ENSMUST00000054708.4	1	ENSMUSG00000032123	missense	Q/H	402	Dpagt1	ENSMUST00000054708.4:c.1206A>C	ENSMUSP00000056282.3:p.Gln402His	H-2-Kb	9	6	8	ATFSIRYHL	ATFSIRYQL	NetMHCpan	80.7	165.9	2.056	125	0.256	339.306	452.341	1.333	331.74	204.25	165.9	80.7	572.9411296	474.3621186	581.0988286	615.5310989	M3	0.185714286	0.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.263	125	71	18	0.253521127	9qA5.2	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr9	39258136	39258136	A	C	ENSMUST00000076903.2	NA	ENSMUSG00000063380	missense	C/G	182	Olfr945	ENSMUST00000076903.2:c.544T>G	ENSMUSP00000076169.2:p.Cys182Gly	H-2-Kb	9	5	7	VINHYFGDI	VINHYFCDI	NetMHC	248.12	402.57	1.622	208	0.409	313.678	336.411	1.072	402.57	248.12	262.7	378.9	382.9217191	379.4110717	289.9011913	248.4562923	M3	-0.657142857	0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.424	208	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	2	1	sgMsh2	cell line
chr9	39258136	39258136	A	C	ENSMUST00000076903.2	NA	ENSMUSG00000063380	missense	C/G	182	Olfr945	ENSMUST00000076903.2:c.544T>G	ENSMUSP00000076169.2:p.Cys182Gly	H-2-Kb	9	6	6	INHYFGDIL	INHYFCDIL	NetMHCpan	249.4	114.5	0.459	208	0.409	350.747	161.261	0.46	107.57	280.66	114.5	249.4	208.0223508	420.8332054	225.553723	456.2995075	M3	0.385714286	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.424	208	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	2	1	sgMsh2	cell line
chr9	38581355	38581355	C	T	ENSMUST00000217160.2	2	ENSMUSG00000111448	missense	P/L	26	Olfr912	ENSMUST00000217160.2:c.77C>T	ENSMUSP00000150014.1:p.Pro26Leu	H-2-Kb	9	9	3	QILLFLVFL	QIPLFLVFL	SMM	184.124	315.58	1.714	230	0.235	288.626	419.741	1.454	277.75	299.76	646.9	2082.1	315.5803838	184.1238299	523.901932	277.4917016	M3	3.571428571	3.671428571	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.243	230	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr9	38430465	38430465	A	T	ENSMUST00000216644.1	5	ENSMUSG00000052058	missense	Y/F	61	Olfr901	ENSMUST00000216644.1:c.182A>T	ENSMUSP00000150506.1:p.Tyr61Phe	H-2-Kb	9	7	5	HTPMFYFLF	HTPMYYFLF	NetMHCpan	167.9	171.6	1.022	330	0.233	264.55	314.094	1.187	361.43	303.1	171.6	167.9	278.0417415	226.0008122	350.1466697	329.0409876	M3	1.6	1.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.234	330	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr9	39319155	39319155	A	C	ENSMUST00000216132.1	5	ENSMUSG00000057349	missense	V/G	153	Olfr948	ENSMUST00000216132.1:c.458T>G	ENSMUSP00000149422.1:p.Val153Gly	H-2-Kb	9	8	4	IYAGFCASV	IYAVFCASV	NetMHC	307.2	185.83	0.605	226	0.239	442.988	293.761	0.663	185.83	307.2	219.3	397.2	368.2222268	488.776143	420.0006862	494.595317	M3	1.7	1.7	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.24	226	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr9	19808619	19808619	G	T	ENSMUST00000217280.1	5	ENSMUSG00000095448	missense	Q/H	100	Olfr859	ENSMUST00000217280.1:c.300G>T	ENSMUSP00000151076.1:p.Gln100His	H-2-Kb	9	10	2	THVSFFILF	TQVSFFILF	SMM	175.029	226.001	1.291	424	0.236	275.16	317.494	1.154	322.92	314.68	446.4	362.2	226.0008122	175.0289954	312.0685478	235.640535	M3	2.871428571	2.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.237	424	0	0	NA	9qA3	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr8	123200246	123200246	CA	C	ENSMUST00000019422.5	1	ENSMUSG00000019278	FS	N/X	270	Dpep1	ENSMUST00000019422.5:c.809del	ENSMUSP00000019422.4:p.Asn270ThrfsTer55	H-2-Kb	9	45	0	IMMVLLCFL	NA	SMM	165.619	NA	NA	79	0.228	264.355	NA	NA	NA	319.66	NA	450.4	NA	165.6189397	NA	209.0499173	M3	3.257142857	3.257142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.237	79	0	0	NA	8qE1	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr9	38430465	38430465	A	T	ENSMUST00000216644.1	5	ENSMUSG00000052058	missense	Y/F	61	Olfr901	ENSMUST00000216644.1:c.182A>T	ENSMUSP00000150506.1:p.Tyr61Phe	H-2-Kb	9	11	1	FYFLFNLSF	YYFLFNLSF	SMM	275.493	314.855	1.143	330	0.233	352.614	380.368	1.079	404.9	391.72	1302.1	2172.3	314.8545691	275.4926395	355.8360953	313.5089908	M3	1.671428571	1.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.234	330	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr9	50541135	50541135	CT	C	ENSMUST00000119103.1	5	ENSMUSG00000032066	FS	K/X	211	Bco2	ENSMUST00000119103.1:c.632del	ENSMUSP00000112727.1:p.Lys211ArgfsTer23	H-2-Kb	9	22	0	RCYVPLPPL	NA	NetMHCpan	362.2	NA	NA	42	0.167	400.867	NA	NA	NA	415.27	NA	362.2	NA	386.4648502	NA	431.7675507	M3	0.814285714	0.814285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.189	42	9	0	0	9qA5.3	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.80936116	sgMsh2	cell line
chr9	14464244	14464244	CT	C	ENSMUST00000058796.6	1	ENSMUSG00000053914	FS	K/X	106	Kdm4d	ENSMUST00000058796.6:c.317del	ENSMUSP00000061632.6:p.Lys106SerfsTer62	H-2-Kb	9	32	0	CMSHRFMVL	NA	SMM	252.412	NA	NA	117	0.282	323.535	NA	NA	NA	564.66	NA	358.5	NA	252.4120012	NA	288.5692163	M3	0.6	0.6	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.299	117	0	0	NA	9qA2	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr8	121888323	121888323	A	G	ENSMUST00000045557.9	1	ENSMUSG00000040010	missense	W/R	262	Slc7a5	ENSMUST00000045557.9:c.784T>C	ENSMUSP00000041557.8:p.Trp262Arg	H-2-Kb	9	6	6	FAYGGRNYL	FAYGGWNYL	SMM	342.855	144.248	0.421	86	0.244	404.088	149.076	0.369	211.24	824.21	122.4	408	144.2480663	342.8546153	153.9040328	400.1750427	M3	-1.085714286	-0.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.263	86	132	33	0.25	8qE1	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chrX	69844125	69844125	G	T	ENSMUST00000033532.6	1	ENSMUSG00000031189	missense	K/N	923	Aff2	ENSMUST00000033532.6:c.2769G>T	ENSMUSP00000033532.6:p.Lys923Asn	H-2-Db	9	7	5	CATFNGISI	CATFKGISI	NetMHC	268.39	18926.62	70.519	42	0.452	327.554	13462.653	41.101	18926.62	268.39	14549.6	327.3	10656.63277	327.8083411	12375.70647	368.6124504	M3	0.914285714	1	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.476	42	4	4	1	XqA7.2	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	sgMsh2	cell line
chrX	23315137	23315137	G	A	ENSMUST00000035973.4	5	ENSMUSG00000036782	missense	R/C	15	Klhl13	ENSMUST00000035973.4:c.43C>T	ENSMUSP00000041190.4:p.Arg15Cys	H-2-Db	9	8	4	AILCNRSLV	AILRNRSLV	SMM	330.081	363.597	1.102	8	0.625	431.57	517.569	1.199	625.34	442.83	842.2	486.8	363.5967562	330.0806	409.7981561	420.3102682	M3	0.785714286	0.828571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.5	8	48	33	0.6875	XqA2	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	sgMsh2	cell line
chr9	105026705	105026705	A	T	ENSMUST00000057742.14	1	ENSMUSG00000032564	missense	Q/H	435	Cpne4	ENSMUST00000057742.14:c.1305A>T	ENSMUSP00000049663.8:p.Gln435His	H-2-Kb	8	9	3	ASHYFILL	ASQYFILL	NetMHCpan	15.1	35.7	2.364	100	0.28	41.412	58.188	1.405	30.75	20.2	35.7	15.1	80.67519058	70.42713151	91.77829809	62.62388407	M3	1.371428571	1.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.275	100	0	0	NA	9qF1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chrX	59250947	59250947	A	AG	ENSMUST00000124402.1	2	ENSMUSG00000031137	FS	P/PX	23	Fgf13	ENSMUST00000124402.1:c.68dup	ENSMUSP00000114905.1:p.Gly24TrpfsTer28	H-2-Kb	8	19	0	VTTRFHPI	NA	NetMHCpan	45.2	NA	NA	21	0.429	60.112	NA	NA	NA	51.4	NA	45.2	NA	68.82401428	NA	71.07878574	M3	-0.485714286	-0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.433	21	0	0	NA	XqA6	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	sgMsh2	cell line
chr9	123640590	123640590	A	T	ENSMUST00000040960.12	1	ENSMUSG00000036814	missense	C/S	481	Slc6a20a	ENSMUST00000040960.12:c.1441T>A	ENSMUSP00000047690.6:p.Cys481Ser	H-2-Kb	8	10	2	VSYVYGLK	VCYVYGLK	SMMPMBEC	22.067	186.526	8.453	64	0.328	63.142	2311.159	36.603	5104.27	96.31	4266.9	318.2	355.4184757	29.97367541	186.5262676	22.06683258	M3	0.042857143	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.339	64	0	0	NA	9qF4	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	2	1	sgMsh2	cell line
chr9	65128477	65128477	C	T	ENSMUST00000035499.4	1	ENSMUSG00000032816	missense	A/V	632	Igdcc4	ENSMUST00000035499.4:c.1895C>T	ENSMUSP00000045387.3:p.Ala632Val	H-2-Kb	8	8	4	VPFVPAEL	VPFAPAEL	SMM	145.124	151.266	1.042	48	0.229	360.453	542.661	1.505	881.27	547.63	1959.5	1317.9	151.2655393	145.1242539	204.0515979	173.2766328	M3	0.842857143	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.232	48	17	1	0.058823529	9qC	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.993501529	sgMsh2	cell line
chrX	72257609	72257609	T	G	ENSMUST00000064780.3	1	ENSMUSG00000031340	missense	K/T	865	Gabre	ENSMUST00000064780.3:c.2594A>C	ENSMUSP00000066543.3:p.Lys865Thr	H-2-Kb	8	8	4	VLRTYFCM	VLRKYFCM	NetMHCpan	313.9	380	1.211	30	0.467	454.151	592.614	1.305	877.47	794.76	380	313.9	621.9278428	475.0507412	563.3003227	433.2514252	M3	0.642857143	0.971428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.467	30	4	3	0.75	XqA7.3	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	sgMsh2	cell line
chr9	78064712	78064712	T	G	ENSMUST00000024104.8	1	ENSMUSG00000023333	missense	Y/D	312	Gcm1	ENSMUST00000024104.8:c.934T>G	ENSMUSP00000024104.7:p.Tyr312Asp	H-2-Kb	8	10	2	IDYPAYPL	IYYPAYPL	SMM	119.053	83.703	0.703	129	0.279	224.62	75.401	0.336	51.67	871.81	67.1	287.9	83.70280268	119.0529058	113.6946424	161.3392375	M3	-0.528571429	-0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.281	129	0	0	NA	9qE1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chr9	123640590	123640590	A	T	ENSMUST00000040960.12	1	ENSMUSG00000036814	missense	C/S	481	Slc6a20a	ENSMUST00000040960.12:c.1441T>A	ENSMUSP00000047690.6:p.Cys481Ser	H-2-Kb	9	8	4	IAVSYVYGL	IAVCYVYGL	NetMHCpan	23.6	41.6	1.763	64	0.328	105.237	151.867	1.443	54.13	25.5	41.6	23.6	254.7475407	184.9737069	249.6031145	237.82089	M3	1.2	1.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.339	64	0	0	NA	9qF4	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	2	1	sgMsh2	cell line
chr9	96297705	96297705	G	GA	ENSMUST00000165768.3	1	ENSMUSG00000032411	FS	E/EX	140	Tfdp2	ENSMUST00000165768.3:c.426dup	ENSMUSP00000128260.2:p.Glu143ArgfsTer47	H-2-Kb	9	20	0	PAYQFCSGM	NA	NetMHC	85.15	NA	NA	144	0.201	106.96	NA	NA	NA	85.15	NA	165.8	NA	88.53398242	NA	125.3862749	M3	0.171428571	0.171428571	FALSE	FALSE	FALSE	1	FALSE	0	Strelka2;Vardict	2	0.2014	144	59	0	0	9qE3.3	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.862462104	sgMsh2	cell line
chrX	53737717	53737717	CT	C	ENSMUST00000069209.1	1	ENSMUSG00000055555	FS	F/X	191	4930502E18Rik	ENSMUST00000069209.1:c.575del	ENSMUSP00000064619.1:p.Phe192SerfsTer39	H-2-Kb	9	9	4	TIFSPWILL	NA	SMM	107.922	NA	NA	51	0.549	133.325	NA	NA	NA	110.65	NA	156	NA	107.9220037	NA	162.6484766	M3	1.657142857	1.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.532	51	0	0	NA	XqA5	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	sgMsh2	cell line
chrX	86747655	86747655	G	A	ENSMUST00000113966.7	5	ENSMUSG00000052372	missense	P/S	560	Il1rapl1	ENSMUST00000113966.7:c.1678C>T	ENSMUSP00000109599.1:p.Pro560Ser	H-2-Kb	9	10	2	MSFKRIEPI	MPFKRIEPI	NetMHCpan	58.3	2180.6	37.403	50	0.4	177.366	2262.711	12.757	4631.31	173.91	2180.6	58.3	2344.822647	233.4049166	1946.480243	180.8214719	M3	-0.242857143	-0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.413	50	0	0	NA	XqC1	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	sgMsh2	cell line
chrX	56362784	56362784	GA	G	ENSMUST00000101560.3	1	ENSMUSG00000073176	FS	E/X	239	Zfp449	ENSMUST00000101560.3:c.723del	ENSMUSP00000099096.3:p.Lys241AsnfsTer10	H-2-Kb	9	12	2	KNWKLCTHL	NA	NetMHCpan	216.4	NA	NA	45	0.533	360.47	NA	NA	NA	217.15	NA	216.4	NA	593.0755223	NA	503.7905305	M3	0.2	0.2	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.538	45	25	13	0.52	XqA6	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	sgMsh2	cell line
chr9	105026705	105026705	A	T	ENSMUST00000057742.14	1	ENSMUSG00000032564	missense	Q/H	435	Cpne4	ENSMUST00000057742.14:c.1305A>T	ENSMUSP00000049663.8:p.Gln435His	H-2-Kb	9	9	3	ASHYFILLI	ASQYFILLI	NetMHCpan	194.8	511.6	2.626	100	0.28	354.936	657.147	1.851	562.48	339.95	511.6	194.8	751.8132925	369.9218633	849.6694433	416.1500968	M3	2.128571429	2.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.275	100	0	0	NA	9qF1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chrX	64271265	64271265	T	C	ENSMUST00000069926.13	1	ENSMUSG00000046699	missense	T/A	599	Slitrk4	ENSMUST00000069926.13:c.1795A>G	ENSMUSP00000064443.7:p.Thr599Ala	H-2-Kb	9	8	4	PAIAFTTPL	PAITFTTPL	SMM	267.985	239.392	0.893	72	0.389	348.429	300.576	0.863	409.34	540.29	319.8	361.7	239.3922023	267.9847002	281.3519957	335.1583163	M3	1.414285714	1.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.387	72	0	0	NA	XqA7.1	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	sgMsh2	cell line
chr9	119958066	119958066	A	G	ENSMUST00000035100.5	1	ENSMUSG00000032514	missense	E/G	713	Ttc21a	ENSMUST00000035100.5:c.2138A>G	ENSMUSP00000035100.5:p.Glu713Gly	H-2-Kb	9	4	8	LYIGCYVGL	LYIGCYVEL	SMMPMBEC	243.36	269.929	1.109	101	0.178	418.183	661.365	1.582	1022.91	541.17	983.8	753	338.9299909	295.1956816	269.9292823	243.3604501	M3	1.842857143	1.842857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.18	101	0	0	NA	9qF4	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.770820152	sgMsh2	cell line
chr9	105026705	105026705	A	T	ENSMUST00000057742.14	1	ENSMUSG00000032564	missense	Q/H	435	Cpne4	ENSMUST00000057742.14:c.1305A>T	ENSMUSP00000049663.8:p.Gln435His	H-2-Kb	9	10	2	SHYFILLIL	SQYFILLIL	SMM	295.196	381.162	1.291	100	0.28	321.169	437.853	1.363	778.38	713.59	417.3	296.2	381.1623536	295.1956816	458.4056903	346.1385739	M3	3.128571429	3.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.275	100	0	0	NA	9qF1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	sgMsh2	cell line
chrX	144481235	144481235	T	C	ENSMUST00000040184.3	1	ENSMUSG00000041710	missense	I/V	209	Trpc5	ENSMUST00000040184.3:c.625A>G	ENSMUSP00000049063.3:p.Ile209Val	H-2-Db	9	11	1	VALSSEDPI	IALSSEDPI	NetMHC	24.86	31.44	1.265	61	0.508	79.729	105.196	1.319	31.44	24.86	108.4	109.1	109.5519217	80.46740575	101.992914	78.98961554	M3	-0.271428571	0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.502	61	0	0	NA	XqF2	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	sgMsh2	cell line
chrX	127060561	127060561	G	T	ENSMUST00000096332.1	1	ENSMUSG00000062791	missense	G/V	123	Gm382	ENSMUST00000096332.1:c.368G>T	ENSMUSP00000094056.1:p.Gly123Val	H-2-Db	9	8	4	TVFVNPEAV	TVFGNPEAV	NetMHCpan	121.7	1040	8.546	44	0.636	354.372	1377.386	3.887	7545.19	794.92	1040	121.7	1654.321828	401.4394047	1100.449202	307.3052643	M3	0.628571429	0.628571429	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.612	44	0	0	NA	XqE3	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	sgMsh2	cell line
chrX	152061792	152061792	CA	C	ENSMUST00000045312.5	1	ENSMUSG00000041133	FS	N/X	1229	Smc1a	ENSMUST00000045312.5:c.3686del	ENSMUSP00000044645.5:p.Asn1229ThrfsTer47	H-2-Kb	8	19	0	SIFLSGSL	NA	NetMHC	59.77	NA	NA	78	0.41	63.291	NA	NA	NA	59.77	NA	62.5	NA	64.08258172	NA	76.51384027	M3	1.842857143	1.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.403	78	126	48	0.380952381	XqF3	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	sgMsh2	cell line
chrX	144481235	144481235	T	C	ENSMUST00000040184.3	1	ENSMUSG00000041710	missense	I/V	209	Trpc5	ENSMUST00000040184.3:c.625A>G	ENSMUSP00000049063.3:p.Ile209Val	H-2-Kb	8	6	6	ASPSLVAL	ASPSLIAL	NetMHC	293.89	322.69	1.098	61	0.508	366.082	413.167	1.129	322.69	293.89	550.6	481.2	374.7485835	343.3523309	451.5855118	388.8123042	M3	1.485714286	1.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.502	61	0	0	NA	XqF2	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	sgMsh2	cell line
chrX	152061792	152061792	CA	C	ENSMUST00000045312.5	1	ENSMUSG00000041133	FS	N/X	1229	Smc1a	ENSMUST00000045312.5:c.3686del	ENSMUSP00000044645.5:p.Asn1229ThrfsTer47	H-2-Kb	9	31	0	VHLLSWISL	NA	NetMHC	278.75	NA	NA	78	0.41	319.29	NA	NA	NA	278.75	NA	330.4	NA	317.7678825	NA	320.8115533	M3	1.914285714	1.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.403	78	126	48	0.380952381	XqF3	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	sgMsh2	cell line
chrX	101673545	101673545	GA	G	ENSMUST00000044475.4	1	ENSMUSG00000034160	FS	K/X	757	Ogt	ENSMUST00000044475.4:c.2271del	ENSMUSP00000045409.4:p.Lys757AsnfsTer23	H-2-Kb	9	22	0	VTQLLICPL	NA	NetMHCpan	324.4	NA	NA	54	0.463	478.008	NA	NA	NA	401.25	NA	324.4	NA	554.7662088	NA	602.9065471	M3	1.9	2.085714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.48	54	62	0	0	XqD	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	sgMsh2	cell line
chrX	152061792	152061792	CA	C	ENSMUST00000045312.5	1	ENSMUSG00000041133	FS	N/X	1229	Smc1a	ENSMUST00000045312.5:c.3686del	ENSMUSP00000044645.5:p.Asn1229ThrfsTer47	H-2-Kb	9	34	0	LSWISLPPI	NA	NetMHCpan	337.8	NA	NA	78	0.41	474.202	NA	NA	NA	476.07	NA	337.8	NA	588.9928191	NA	472.3348608	M3	1.128571429	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.403	78	126	48	0.380952381	XqF3	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	sgMsh2	cell line
chr1	38821218	38821218	T	C	ENSMUST00000147695.8	5	ENSMUSG00000048814	missense	T/A	236	Lonrf2	ENSMUST00000147695.8:c.706A>G	ENSMUSP00000117600.2:p.Thr236Ala	H-2-Db	9	10	2	LAMKNYDQA	LTMKNYDQA	NetMHCpan	117.2	975.6	8.324	156	0.423	127.134	943.407	7.421	2610.73	117.63	975.6	117.2	911.213195	140.1586804	780.8542888	136.6375292	M4_p20	-1.714285714	-0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.414	156	0	0	NA	1qB	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr1	165539831	165539831	A	G	ENSMUST00000027852.14	1	ENSMUSG00000026567	missense	T/A	557	Adcy10	ENSMUST00000027852.14:c.1669A>G	ENSMUSP00000027852.8:p.Thr557Ala	H-2-Db	9	4	8	SFHQNFYAI	SFHQNFYTI	SMM	105.104	62.176	0.592	212	0.476	167.108	96.911	0.58	73.99	141.21	379.5	647.3	62.17560216	105.1041828	119.8312253	193.0056399	M4_p20	-0.342857143	-0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.456	212	0	0	NA	1qH2.3	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr1	132527752	132527752	TG	T	ENSMUST00000086521.10	1	ENSMUSG00000053024	FS	P/X	249	Cntn2	ENSMUST00000086521.10:c.746del	ENSMUSP00000083707.4:p.Pro249GlnfsTer84	H-2-Db	9	60	0	LALKMRVPM	NA	SMMPMBEC	116.834	NA	NA	55	0.364	148.131	NA	NA	NA	162.72	NA	189.2	NA	133.5426531	NA	116.8342029	M4_p20	0.257142857	1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.327	55	0	0	NA	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr1	85579187	85579187	CT	C	ENSMUST00000093508.6	1	ENSMUSG00000070034	FS	K/X	385	Sp110	ENSMUST00000093508.6:c.1154del	ENSMUSP00000091226.6:p.Lys385SerfsTer13	H-2-Db	9	11	1	SAFRMRQEI	NA	SMMPMBEC	212.114	NA	NA	40	0.375	246.936	NA	NA	NA	356.88	NA	263.4	NA	230.4729708	NA	212.1143253	M4_p20	-0.971428571	-0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.391	40	0	0	NA	1qC5	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr1	88230773	88230773	C	A	ENSMUST00000113130.7	5	ENSMUSG00000079429	missense	L/M	181	Mroh2a	ENSMUST00000113130.7:c.541C>A	ENSMUSP00000108755.1:p.Leu181Met	H-2-Db	9	11	1	MANGNVFEF	LANGNVFEF	SMMPMBEC	303.788	456.636	1.503	760	0.043	353.297	628.156	1.778	3793.75	2319.97	743.9	307	512.4128356	399.5949582	456.6358453	303.78757	M4_p20	-0.157142857	0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.041	760	0	0	NA	1qD	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.224325718	sgMsh2	cell line
chr1	111861881	111861881	C	CA	ENSMUST00000035462.6	1	ENSMUSG00000038702	FS	W/LX	308	Dsel	ENSMUST00000035462.6:c.922dup	ENSMUSP00000043570.5:p.Trp308LeufsTer23	H-2-Kb	8	14	0	LCYTFARL	NA	NetMHC	4.59	NA	NA	157	0.331	6.92	NA	NA	NA	4.59	NA	7.9	NA	9.948096742	NA	5.939364789	M4_p20	0.628571429	0.628571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.324	157	0	0	NA	1qE2.1	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr1	127412243	127412243	G	T	ENSMUST00000038361.10	1	ENSMUSG00000036155	missense	V/L	454	Mgat5	ENSMUST00000038361.10:c.1360G>T	ENSMUSP00000038359.4:p.Val454Leu	H-2-Kb	8	4	8	QSLVYGKL	QSLVYGKV	NetMHC	15.26	75.8	4.967	142	0.169	52.362	246.565	4.709	75.8	15.26	265.7	39.6	232.6697911	65.12383991	260.4593785	71.90183929	M4_p20	0.771428571	0.771428571	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.18	142	0	0	NA	1qE3	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.984844616	sgMsh2	cell line
chr1	128364313	128364313	A	G	ENSMUST00000027602.14	1	ENSMUSG00000026356	missense	V/A	476	Dars	ENSMUST00000027602.14:c.1427T>C	ENSMUSP00000027602.8:p.Val476Ala	H-2-Kb	8	11	1	ATMLFLGL	VTMLFLGL	NetMHCpan	13.4	5.5	0.41	151	0.205	28.635	8.869	0.31	5.27	15.32	5.5	13.4	14.47904774	54.54312289	12.23883275	41.95077612	M4_p20	2.142857143	2.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.206	151	0	0	NA	1qE3	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr1	84912361	84912361	C	A	ENSMUST00000027422.6	1	ENSMUSG00000026220	missense	A/S	408	Slc16a14	ENSMUST00000027422.6:c.1222G>T	ENSMUSP00000027422.5:p.Ala408Ser	H-2-Kb	8	6	6	LMHTYSSL	LMHTYASL	NetMHC	32.78	13.28	0.405	205	0.127	74.006	33.853	0.457	13.28	32.78	20.2	35.1	63.64144033	143.7937467	47.50507412	112.911974	M4_p20	-0.157142857	-0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.146	205	0	0	NA	1qC5	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.79881841	sgMsh2	cell line
chr1	132014588	132014588	A	G	ENSMUST00000086556.11	1	ENSMUSG00000026436	missense	Y/C	66	Elk4	ENSMUST00000086556.11:c.197A>G	ENSMUSP00000083743.5:p.Tyr66Cys	H-2-Kb	8	6	6	RALRYCYV	RALRYYYV	NetMHC	53.18	33.42	0.628	64	0.109	95.601	68.626	0.718	33.42	53.18	49.2	71.6	88.05215715	119.6024291	102.2680559	132.3548926	M4_p20	0.742857143	0.742857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.113	64	0	0	NA	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.618263564	sgMsh2	cell line
chr1	165551108	165551108	T	C	ENSMUST00000027852.14	1	ENSMUSG00000026567	missense	M/T	822	Adcy10	ENSMUST00000027852.14:c.2465T>C	ENSMUSP00000027852.8:p.Met822Thr	H-2-Kb	8	11	1	TSLSHQML	MSLSHQML	NetMHC	75.85	50.29	0.663	196	0.398	115.039	86.865	0.755	50.29	75.85	102.4	165.3	72.40023903	101.3304567	101.3304567	128.7478543	M4_p20	0.171428571	0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.406	196	0	0	NA	1qH2.3	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr1	54988042	54988042	T	C	ENSMUST00000027127.13	1	ENSMUSG00000025982	missense	N/S	1218	Sf3b1	ENSMUST00000027127.13:c.3653A>G	ENSMUSP00000027127.7:p.Asn1218Ser	H-2-Kb	8	5	7	LNYVWPSV	LNYVWPNV	NetMHCpan	41.5	29.8	0.718	205	0.137	120.034	49.952	0.416	24.5	79.84	29.8	41.5	75.46403103	185.2422298	70.10354824	160.228586	M4_p20	0.042857143	0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.148	205	0	0	NA	1qC1.2	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.809761128	sgMsh2	cell line
chr1	58595689	58595689	A	T	ENSMUST00000027193.8	1	ENSMUSG00000026032	missense	I/F	67	Ndufb3	ENSMUST00000027193.8:c.199A>T	ENSMUSP00000027193.8:p.Ile67Phe	H-2-Kb	8	9	3	GNFTFPSV	GNITFPSV	NetMHCpan	49.1	289.6	5.898	159	0.063	107.5	583.368	5.427	915.1	105.67	289.6	49.1	648.2462304	133.5795574	518.4895408	109.3301641	M4_p20	0.457142857	0.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.071	159	0	0	NA	1qC1.3	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.388466487	sgMsh2	cell line
chr1	88230773	88230773	C	A	ENSMUST00000113130.7	5	ENSMUSG00000079429	missense	L/M	181	Mroh2a	ENSMUST00000113130.7:c.541C>A	ENSMUSP00000108755.1:p.Leu181Met	H-2-Kb	8	4	8	VIVTLAKM	VIVTLAKL	NetMHC	187.36	44.97	0.24	760	0.043	297.593	82.171	0.276	44.97	187.36	68.9	221.3	103.6907462	415.6616909	95.44210297	373.8866857	M4_p20	1.657142857	1.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.041	760	0	0	NA	1qD	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.224325718	sgMsh2	cell line
chr1	151351713	151351713	T	C	ENSMUST00000023918.12	1	ENSMUSG00000023150	missense	Y/H	91	Ivns1abp	ENSMUST00000023918.12:c.271T>C	ENSMUSP00000023918.6:p.Tyr91His	H-2-Kb	8	5	7	VLLNYAHT	VLLNYAYT	SMMPMBEC	192.637	198.034	1.028	264	0.197	277.822	339.303	1.221	371.18	233.73	1146.3	1299.8	307.4255792	321.9141004	198.0341096	192.6371303	M4_p20	0.1	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	264	0	0	NA	1qG1	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr1	154633618	154633618	A	G	ENSMUST00000187541.6	1	ENSMUSG00000004110	missense	L/P	297	Cacna1e	ENSMUST00000187541.6:c.890T>C	ENSMUSP00000140937.1:p.Leu297Pro	H-2-Kb	8	8	4	DNIPFAVL	DNILFAVL	SMM	178.131	93.485	0.525	157	0.121	412.973	165.678	0.401	220.76	608.34	374.2	572	93.48458404	178.1312026	110.5961477	253.9451951	M4_p20	1.714285714	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.139	157	0	0	NA	1qG3	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.760518898	sgMsh2	cell line
chr1	134203378	134203378	A	G	ENSMUST00000086465.5	1	ENSMUSG00000042429	missense	F/S	185	Adora1	ENSMUST00000086465.5:c.554T>C	ENSMUSP00000083656.4:p.Phe185Ser	H-2-Kb	8	6	6	MVYFNSFV	MVYFNFFV	NetMHCpan	222.1	254.3	1.145	181	0.193	305.831	292.412	0.956	289.88	934.33	254.3	222.1	294.9442949	295.6242117	310.2701531	316.0385059	M4_p20	1.2	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.187	181	0	0	NA	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr1	151351713	151351713	T	C	ENSMUST00000023918.12	1	ENSMUSG00000023150	missense	Y/H	91	Ivns1abp	ENSMUST00000023918.12:c.271T>C	ENSMUSP00000023918.6:p.Tyr91His	H-2-Kb	9	7	5	LNYAHTAQL	LNYAYTAQL	NetMHCpan	10.4	5.2	0.5	264	0.197	31.415	21.341	0.679	6.52	17.41	5.2	10.4	48.31811688	60.27122243	36.16179668	45.42030017	M4_p20	-0.185714286	-0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	264	0	0	NA	1qG1	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr1	165551108	165551108	T	C	ENSMUST00000027852.14	1	ENSMUSG00000026567	missense	M/T	822	Adcy10	ENSMUST00000027852.14:c.2465T>C	ENSMUSP00000027852.8:p.Met822Thr	H-2-Kb	9	11	1	TSLSHQMLV	MSLSHQMLV	NetMHC	188.72	170.9	0.906	196	0.398	404.261	366.256	0.906	170.9	188.72	373.5	576.1	359.0128555	353.2726369	537.3410257	455.2500477	M4_p20	0.885714286	0.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.406	196	0	0	NA	1qH2.3	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr1	128364313	128364313	A	G	ENSMUST00000027602.14	1	ENSMUSG00000026356	missense	V/A	476	Dars	ENSMUST00000027602.14:c.1427T>C	ENSMUSP00000027602.8:p.Val476Ala	H-2-Kb	9	6	6	IGLERATML	IGLERVTML	NetMHCpan	169.6	134.8	0.795	151	0.205	303	226.99	0.749	136.11	195.56	134.8	169.6	457.2039776	492.1641774	317.8703353	410.4403034	M4_p20	0.371428571	0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.206	151	0	0	NA	1qE3	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr1	85579187	85579187	CT	C	ENSMUST00000093508.6	1	ENSMUSG00000070034	FS	K/X	385	Sp110	ENSMUST00000093508.6:c.1154del	ENSMUSP00000091226.6:p.Lys385SerfsTer13	H-2-Kb	9	11	1	SAFRMRQEI	NA	NetMHC	222.54	NA	NA	40	0.375	380.963	NA	NA	NA	222.54	NA	325.3	NA	436.6264089	NA	527.5334467	M4_p20	-0.971428571	-0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.391	40	0	0	NA	1qC5	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr1	132527752	132527752	TG	T	ENSMUST00000086521.10	1	ENSMUSG00000053024	FS	P/X	249	Cntn2	ENSMUST00000086521.10:c.746del	ENSMUSP00000083707.4:p.Pro249GlnfsTer84	H-2-Kb	9	78	0	VTPSRDASL	NA	SMM	205.168	NA	NA	55	0.364	229.708	NA	NA	NA	229.14	NA	441.8	NA	205.1681772	NA	230.2767015	M4_p20	-0.8	-0.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.327	55	0	0	NA	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr1	54988042	54988042	T	C	ENSMUST00000027127.13	1	ENSMUSG00000025982	missense	N/S	1218	Sf3b1	ENSMUST00000027127.13:c.3653A>G	ENSMUSP00000027127.7:p.Asn1218Ser	H-2-Kb	9	11	1	SVFETSPHV	NVFETSPHV	NetMHC	281.5	2163.05	7.684	205	0.137	438.894	2456.263	5.596	2163.05	281.5	3287.7	519.6	1545.645878	358.1871488	2749.476424	685.8829388	M4_p20	-0.4	-0.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.148	205	0	0	NA	1qC1.2	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.809761128	sgMsh2	cell line
chr1	85642993	85642993	A	G	ENSMUST00000080204.10	1	ENSMUSG00000070031	missense	K/R	448	Sp140	ENSMUST00000080204.10:c.1343A>G	ENSMUSP00000079095.4:p.Lys448Arg	H-2-Kb	9	10	2	SRMPYYYYF	SKMPYYYYF	SMM	234.482	268.602	1.146	91	0.154	335.317	342.105	1.02	335.61	342.35	348.6	524.7	268.6024688	234.4822647	349.3413547	328.2842143	M4_p20	-0.3	-0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.166	91	0	0	NA	1qC5	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.90824559	sgMsh2	cell line
chr1	54988042	54988042	T	C	ENSMUST00000027127.13	1	ENSMUSG00000025982	missense	N/S	1218	Sf3b1	ENSMUST00000027127.13:c.3653A>G	ENSMUSP00000027127.7:p.Asn1218Ser	H-2-Kb	9	5	7	LNYVWPSVF	LNYVWPNVF	NetMHCpan	129	276.3	2.142	205	0.137	192.609	263.817	1.37	587.37	373.41	276.3	129	202.3531643	176.6485187	251.3332806	208.5691158	M4_p20	0.942857143	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.148	205	0	0	NA	1qC1.2	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.809761128	sgMsh2	cell line
chr1	85642993	85642993	A	G	ENSMUST00000080204.10	1	ENSMUSG00000070031	missense	K/R	448	Sp140	ENSMUST00000080204.10:c.1343A>G	ENSMUSP00000079095.4:p.Lys448Arg	H-2-Kb	9	4	8	SESSFFSRM	SESSFFSKM	SMM	350.841	639.897	1.824	91	0.154	480.171	992.792	2.068	1226.57	457.71	1243.7	666.4	639.8968908	350.8407252	759.0143731	502.6318444	M4_p20	0.085714286	0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.166	91	0	0	NA	1qC5	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.90824559	sgMsh2	cell line
chr1	127412243	127412243	G	T	ENSMUST00000038361.10	1	ENSMUSG00000036155	missense	V/L	454	Mgat5	ENSMUST00000038361.10:c.1360G>T	ENSMUSP00000038359.4:p.Val454Leu	H-2-Kb	9	6	6	LVYGKLDSF	LVYGKVDSF	SMM	278.042	542.138	1.95	142	0.169	372.202	726.824	1.953	911.51	463.7	1434.9	1078.9	542.1381881	278.0417415	480.0096849	280.704904	M4_p20	-0.471428571	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.18	142	0	0	NA	1qE3	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.984844616	sgMsh2	cell line
chr1	94024473	94024473	T	C	ENSMUST00000190212.6	1	ENSMUSG00000034000	missense	V/A	188	Neu4	ENSMUST00000190212.6:c.563T>C	ENSMUSP00000140127.1:p.Val188Ala	H-2-Kb	9	5	7	VGPGHGAQL	VGPGHGVQL	NetMHCpan	296.6	569.5	1.92	130	0.115	474.793	820.505	1.728	1148.74	475.07	569.5	296.6	997.9527977	692.0062231	643.0577846	474.5150595	M4_p20	-0.5	3.17E-17	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.126	130	0	0	NA	1qD	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.689391231	sgMsh2	cell line
chr1	134203378	134203378	A	G	ENSMUST00000086465.5	1	ENSMUSG00000042429	missense	F/S	185	Adora1	ENSMUST00000086465.5:c.554T>C	ENSMUSP00000083656.4:p.Phe185Ser	H-2-Kb	9	7	5	VYFNSFVWV	VYFNFFVWV	SMMPMBEC	180.821	38.305	0.212	181	0.193	323.34	92.217	0.285	146.13	491.19	283.6	458.7	36.82222268	187.9792879	38.30451784	180.8214719	M4_p20	1.257142857	1.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.187	181	0	0	NA	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr10	68778643	68778643	T	C	ENSMUST00000080995.7	1	ENSMUSG00000060044	missense	L/P	296	Tmem26	ENSMUST00000080995.7:c.887T>C	ENSMUSP00000079789.6:p.Leu296Pro	H-2-Db	9	5	7	FAVKNSPVM	FAVKNSLVM	NetMHC	8.71	9.25	1.062	234	0.222	25.374	27.679	1.091	9.25	8.71	9.8	10.7	46.62512402	43.51309752	45.5585612	40.04700113	M4_p20	0.071428571	0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.238	234	0	0	NA	10qB5.3	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr10	99758284	99758284	C	A	ENSMUST00000056085.5	NA	ENSMUSG00000046934	missense	Q/H	306	Csl	ENSMUST00000056085.5:c.918G>T	ENSMUSP00000052373.4:p.Gln306His	H-2-Db	9	6	6	HGLANHEVL	HGLANQEVL	NetMHC	32.48	27.91	0.859	297	0.266	100.053	71.039	0.71	27.91	32.48	44.9	42.5	155.8188519	261.5893146	97.17845721	157.6050032	M4_p20	0.485714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.263	297	0	0	NA	10qD1	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr10	68778643	68778643	T	C	ENSMUST00000080995.7	1	ENSMUSG00000060044	missense	L/P	296	Tmem26	ENSMUST00000080995.7:c.887T>C	ENSMUSP00000079789.6:p.Leu296Pro	H-2-Db	11	5	7	FAVKNSPVMAL	FAVKNSLVMAL	NetMHCpan	139.4	136.7	0.981	234	0.222	479.924	423.713	0.883	274.55	315.59	136.7	139.4	572.8751711	644.2582669	2605.313561	2641.557083	M4_p20	0.828571429	0.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.238	234	0	0	NA	10qB5.3	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr10	50754122	50754122	G	T	ENSMUST00000035606.9	5	ENSMUSG00000038774	missense	S/I	1769	Ascc3	ENSMUST00000035606.9:c.5306G>T	ENSMUSP00000036726.8:p.Ser1769Ile	H-2-Kb	8	8	4	MNPIYYSL	MNPSYYSL	NetMHC	10.83	12.27	1.133	308	0.282	32.613	36.465	1.118	12.27	10.83	28.9	21.7	44.02911945	43.52512229	62.62388407	64.23030732	M4_p20	-0.028571429	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.298	308	0	0	NA	10qB3	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr10	52128447	52128447	GT	G	ENSMUST00000020045.9	1	ENSMUSG00000019893	FS	T/X	1026	Ros1	ENSMUST00000020045.9:c.3076del	ENSMUSP00000020045.3:p.Thr1026HisfsTer36	H-2-Kb	8	11	1	HLYHFVHL	NA	NetMHCpan	22.4	NA	NA	117	0.231	43.205	NA	NA	NA	46.07	NA	22.4	NA	64.37837347	NA	40.3403814	M4_p20	0.985714286	0.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.241	117	0	0	NA	10qB3	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr10	107023690	107023690	GC	G	ENSMUST00000165067.8	5	ENSMUSG00000035948	FS	G/X	349	Acss3	ENSMUST00000165067.8:c.1047del	ENSMUSP00000128209.1:p.Pro350LeufsTer61	H-2-Kb	8	5	8	HSYICYGL	HSYICYGP	NetMHC	46.87	6591.43	140.632	83	0.12	71.351	2810.82	39.394	6591.43	46.87	3168.4	59	2453.23979	101.3304567	2171.400833	83.70280268	M4_p20	1	1	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.114	83	0	0	NA	10qD1	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.623734923	sgMsh2	cell line
chr10	115412429	115412429	C	T	ENSMUST00000036044.8	1	ENSMUSG00000034163	missense	P/S	1148	Zfc3h1	ENSMUST00000036044.8:c.3442C>T	ENSMUSP00000044069.8:p.Pro1148Ser	H-2-Kb	8	10	2	RSYQSPLL	RPYQSPLL	NetMHC	47.09	4071.76	86.468	296	0.084	86.672	2129.114	24.565	4071.76	47.09	3466.2	90.6	549.2119775	82.74466462	792.027024	110.0880046	M4_p20	-0.057142857	-0.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.085	296	0	0	NA	10qD2	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.465065513	sgMsh2	cell line
chr10	107023690	107023690	GC	G	ENSMUST00000165067.8	5	ENSMUSG00000035948	FS	G/X	349	Acss3	ENSMUST00000165067.8:c.1047del	ENSMUSP00000128209.1:p.Pro350LeufsTer61	H-2-Kb	8	25	0	SLWEHRML	NA	NetMHCpan	253.8	NA	NA	83	0.12	293.928	NA	NA	NA	562.8	NA	253.8	NA	294.2659418	NA	293.5891489	M4_p20	-0.371428571	-0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.114	83	0	0	NA	10qD1	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.623734923	sgMsh2	cell line
chr1	174181066	174181066	T	A	ENSMUST00000027817.7	1	ENSMUSG00000026532	missense	D/E	245	Spta1	ENSMUST00000027817.7:c.735T>A	ENSMUSP00000027817.7:p.Asp245Glu	H-2-Kb	8	6	6	VNAAWERL	VNAAWDRL	SMM	245.324	243.075	0.991	106	0.255	307.504	540.271	1.757	1045.85	649.98	741.9	310.4	243.0748352	245.323979	338.6413603	304.6070846	M4_p20	-0.714285714	-0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.231	106	0	0	NA	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr10	26271888	26271888	T	C	ENSMUST00000060716.5	5	ENSMUSG00000051354	missense	L/P	487	Samd3	ENSMUST00000060716.5:c.1460T>C	ENSMUSP00000057805.5:p.Leu487Pro	H-2-Kb	9	6	6	QTFNFPETL	QTFNFLETL	NetMHC	70.68	27.41	0.388	105	0.324	201.184	82.234	0.409	27.41	70.68	32	90.4	132.4677013	311.967965	170.7064772	407.6148523	M4_p20	0.014285714	0.014285714	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.297	105	0	0	NA	10qA4	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr10	52128447	52128447	GT	G	ENSMUST00000020045.9	1	ENSMUSG00000019893	FS	T/X	1026	Ros1	ENSMUST00000020045.9:c.3076del	ENSMUSP00000020045.3:p.Thr1026HisfsTer36	H-2-Kb	9	10	2	KHLYHFVHL	NA	NetMHC	73	NA	NA	117	0.231	120.219	NA	NA	NA	73	NA	74	NA	177.4638912	NA	166.4370463	M4_p20	0.985714286	0.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.241	117	0	0	NA	10qB3	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr10	107023690	107023690	GC	G	ENSMUST00000165067.8	5	ENSMUSG00000035948	FS	G/X	349	Acss3	ENSMUST00000165067.8:c.1047del	ENSMUSP00000128209.1:p.Pro350LeufsTer61	H-2-Kb	9	5	8	HSYICYGLF	HSYICYGPL	SMM	90.388	42.083	0.466	83	0.12	96.383	26.909	0.279	5.83	102.35	16.3	113.2	42.08332054	90.3878383	37.51889162	90.41698059	M4_p20	1.514285714	1.514285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.114	83	0	0	NA	10qD1	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.623734923	sgMsh2	cell line
chr10	50754122	50754122	G	T	ENSMUST00000035606.9	5	ENSMUSG00000038774	missense	S/I	1769	Ascc3	ENSMUST00000035606.9:c.5306G>T	ENSMUSP00000036726.8:p.Ser1769Ile	H-2-Kb	9	7	5	IMNPIYYSL	IMNPSYYSL	NetMHCpan	106.8	122.5	1.147	308	0.282	213.697	155.456	0.727	120.49	198.25	122.5	106.8	188.4126249	229.1447967	231.3396105	261.9690589	M4_p20	-0.028571429	0.457142857	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.298	308	0	0	NA	10qB3	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr10	58477121	58477121	C	T	ENSMUST00000003310.6	5	ENSMUSG00000003226	missense	S/F	1221	Ranbp2	ENSMUST00000003310.6:c.3662C>T	ENSMUSP00000003310.5:p.Ser1221Phe	H-2-Kb	9	9	3	KTFGKIRLL	KTSGKIRLL	NetMHC	222.79	5657.7	25.395	276	0.272	305.871	4670.555	15.27	5657.7	222.79	6649.9	229.7	3573.633412	382.0410236	3683.409467	424.864065	M4_p20	0.871428571	0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.271	276	0	0	NA	10qB4	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr1	173270231	173270231	A	G	ENSMUST00000213420.1	5	ENSMUSG00000049605	missense	S/G	19	Olfr418	ENSMUST00000213420.1:c.55A>G	ENSMUSP00000150427.1:p.Ser19Gly	H-2-Kb	9	4	8	FVFQGFSGF	FVFQGFSSF	NetMHCpan	196.3	191.2	0.974	271	0.055	310.099	338.26	1.091	338.26	307.51	191.2	196.3	350.8407252	312.6871254	338.259498	332.8511027	M4_p20	0.471428571	1.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2	2	0.054	271	0	0	NA	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.295453385	sgMsh2	cell line
chr10	25513051	25513051	A	G	ENSMUST00000053748.15	1	ENSMUSG00000019978	missense	T/A	980	Epb41l2	ENSMUST00000053748.15:c.2938A>G	ENSMUSP00000055122.8:p.Thr980Ala	H-2-Kb	9	7	7	VVVHKEAEL	VVVHKETEL	SMM	191.915	256.513	1.337	172	0.18	252.109	438.156	1.738	611.31	309.57	1489.1	853.1	256.5133662	191.9154771	265.0025177	194.6480243	M4_p20	-0.614285714	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.204	172	0	0	NA	10qA4	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr10	81420728	81420728	A	G	ENSMUST00000020461.14	1	ENSMUSG00000055053	missense	L/P	34	Nfic	ENSMUST00000020461.14:c.101T>C	ENSMUSP00000020461.8:p.Leu34Pro	H-2-Kb	9	4	8	FAYTWFNPQ	FAYTWFNLQ	SMM	83.581	106.441	1.274	101	0.257	199.198	371.599	1.865	621.79	311.25	2214.7	982.5	106.4412583	83.58146902	121.4087534	87.14651012	M4_p20	-1.242857143	0.142857143	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.283	101	0	0	NA	10qC1	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr10	107023690	107023690	GC	G	ENSMUST00000165067.8	5	ENSMUSG00000035948	FS	G/X	349	Acss3	ENSMUST00000165067.8:c.1047del	ENSMUSP00000128209.1:p.Pro350LeufsTer61	H-2-Kb	9	40	0	QSMEWLPCL	NA	SMM	264.917	NA	NA	83	0.12	352.973	NA	NA	NA	379.17	NA	483.9	NA	264.9171047	NA	326.7758854	M4_p20	0.857142857	0.857142857	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.114	83	0	0	NA	10qD1	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.623734923	sgMsh2	cell line
chr10	52128447	52128447	GT	G	ENSMUST00000020045.9	1	ENSMUSG00000019893	FS	T/X	1026	Ros1	ENSMUST00000020045.9:c.3076del	ENSMUSP00000020045.3:p.Thr1026HisfsTer36	H-2-Kb	9	13	0	YHFVHLNQF	NA	SMM	226.001	NA	NA	117	0.231	334.669	NA	NA	NA	434.78	NA	520.4	NA	226.0008122	NA	234.557865	M4_p20	0.485714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.241	117	0	0	NA	10qB3	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr1	174502907	174502907	G	GC	ENSMUST00000030039.12	1	ENSMUSG00000028354	FS	A/AX	288	Fmn2	ENSMUST00000030039.12:c.867dup	ENSMUSP00000030039.7:p.Ser290LeufsTer36	H-2-Kb	9	10	4	TAPLRSHRL	NA	SMM	321.447	NA	NA	59	0.186	416.536	NA	NA	NA	500.72	NA	440.2	NA	321.4474612	NA	392.8710251	M4_p20	-1	-0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.173	59	0	0	NA	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.946545103	sgMsh2	cell line
chr1	174181066	174181066	T	A	ENSMUST00000027817.7	1	ENSMUSG00000026532	missense	D/E	245	Spta1	ENSMUST00000027817.7:c.735T>A	ENSMUSP00000027817.7:p.Asp245Glu	H-2-Kb	9	8	4	AAWERLWSL	AAWDRLWSL	NetMHCpan	198.4	287	1.447	106	0.255	281.891	318.114	1.128	913.42	755.69	287	198.4	349.2287585	317.0370367	257.7804634	246.7459312	M4_p20	-0.428571429	-0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.231	106	0	0	NA	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr11	36008549	36008549	T	C	ENSMUST00000102801.7	5	ENSMUSG00000049336	missense	Y/C	2594	Tenm2	ENSMUST00000102801.7:c.7781A>G	ENSMUSP00000099865.1:p.Tyr2594Cys	H-2-Db	9	5	7	SVLNNACYL	SVLNNAYYL	NetMHCpan	29.4	22.1	0.752	286	0.231	58.079	41.36	0.712	16.41	35.69	22.1	29.4	60.62056782	80.46740575	79.53714539	98.30373071	M4_p20	0.514285714	0.642857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.241	286	0	0	NA	11qA4	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr11	70681057	70681057	CG	C	ENSMUST00000036299.13	1	ENSMUSG00000040712	FS	P/X	476	Camta2	ENSMUST00000036299.13:c.1427del	ENSMUSP00000043792.7:p.Pro476ArgfsTer64	H-2-Db	9	50	0	TSWENSSVM	NA	NetMHCpan	74.1	NA	NA	54	0.352	94.741	NA	NA	NA	75.57	NA	74.1	NA	129.903245	NA	113.9121372	M4_p20	-0.485714286	-0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.327	54	0	0	NA	11qB3	chr11-69590981-82929860	5	4	1	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr11	43556667	43556667	G	T	ENSMUST00000050574.6	1	ENSMUSG00000044707	missense	R/L	59	Ccnjl	ENSMUST00000050574.6:c.176G>T	ENSMUSP00000058111.6:p.Arg59Leu	H-2-Db	9	9	3	SALHLAIYL	SARHLAIYL	NetMHC	172.76	6022.1	34.858	88	0.239	214.407	4374.189	20.401	6022.1	172.76	8244.8	501.5	2082.667788	190.8182902	2726.277127	237.9961875	M4_p20	1.885714286	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	88	0	0	NA	11qB1.1	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr11	58757857	58757857	G	A	ENSMUST00000215071.1	5	ENSMUSG00000107677	missense	S/N	64	Olfr316	ENSMUST00000215071.1:c.191G>A	ENSMUSP00000151136.1:p.Ser64Asn	H-2-Db	9	7	5	YFLLNQLSI	YFLLSQLSI	SMM	53.164	1078.003	20.277	699	0.086	141.124	3409.713	24.161	8143.16	200.67	5247	352.8	1078.003076	53.16428776	1572.425217	81.57742638	M4_p20	1.157142857	1.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.088	699	0	0	NA	11qB1.3	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.48147959	sgMsh2	cell line
chr10	129902575	129902575	G	A	ENSMUST00000071557.1	NA	ENSMUSG00000061961	missense	A/V	51	Olfr815	ENSMUST00000071557.1:c.152C>T	ENSMUSP00000071488.1:p.Ala51Val	H-2-Db	9	10	2	IVLTLLDPI	IALTLLDPI	SMMPMBEC	263.372	41.264	0.157	327	0.193	279.139	38.032	0.136	19.81	284.36	34.8	391.2	42.8173712	273.9176392	41.26387413	263.3722415	M4_p20	1.442857143	2.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.198	327	0	0	NA	10qD3	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr10	129501829	129501829	T	C	ENSMUST00000218901.1	NA	ENSMUSG00000044025	missense	F/S	315	Olfr790	ENSMUST00000218901.1:c.944T>C	ENSMUSP00000151759.1:p.Phe315Ser	H-2-Kb	8	13	2	ISFSSKNL	IFFSSKNL	NetMHCpan	18.5	115.8	6.259	106	0.311	19.094	83.126	4.354	110.95	18.52	115.8	18.5	45.89231861	19.66708524	55.30189331	20.68902384	M4_p20	-0.457142857	-0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.305	106	0	0	NA	10qD3	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr10	129626025	129626025	A	G	ENSMUST00000204979.2	2	ENSMUSG00000095002	missense	L/P	12	Olfr798	ENSMUST00000204979.2:c.35T>C	ENSMUSP00000144716.1:p.Leu12Pro	H-2-Kb	8	5	7	SVSEFIPL	SVSEFILL	NetMHC	38.39	159.69	4.16	80	0.125	72.402	215.586	2.978	159.69	38.39	96.3	42.3	271.4813499	102.5038081	318.9627742	115.8083836	M4_p20	1.342857143	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.137	80	0	0	NA	10qD3	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr11	66094123	66094123	T	C	ENSMUST00000080665.9	5	ENSMUSG00000056752	missense	R/G	1207	Dnah9	ENSMUST00000080665.9:c.3619A>G	ENSMUSP00000079494.3:p.Arg1207Gly	H-2-Kb	8	10	2	VGQQVAPL	VRQQVAPL	SMM	66.182	315.312	4.764	163	0.282	74.627	1070.287	14.342	1743.62	66.89	2996.9	350.4	315.3116375	66.18201718	396.9538331	82.36448742	M4_p20	0.114285714	0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.286	163	0	0	NA	11qB3	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr11	34688463	34688463	A	T	ENSMUST00000093193.11	1	ENSMUSG00000020143	missense	L/M	708	Dock2	ENSMUST00000093193.11:c.2122T>A	ENSMUSP00000090884.5:p.Leu708Met	H-2-Kb	8	9	3	ATMAYKKL	ATLAYKKL	NetMHCpan	62.7	80.7	1.287	413	0.262	117.441	94.582	0.805	84.03	96.29	80.7	62.7	118.7790917	204.0515979	105.1332282	138.5925865	M4_p20	-0.328571429	-0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.254	413	0	0	NA	11qA4	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr11	73814764	73814764	A	C	ENSMUST00000144724.2	2	ENSMUSG00000061984	missense	V/G	106	Olfr392	ENSMUST00000144724.2:c.317T>G	ENSMUSP00000123649.2:p.Val106Gly	H-2-Kb	8	5	7	QLYFFMGF	QLYFFMVF	NetMHCpan	184	485.3	2.638	545	0.246	339.319	887.979	2.617	1079.75	205.77	485.3	184	838.9575756	472.8680813	937.0008827	504.3592613	M4_p20	1.771428571	1.771428571	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.241	545	0	0	NA	11qB4	chr11-69590981-82929860	5	4	1	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr11	58757857	58757857	G	A	ENSMUST00000215071.1	5	ENSMUSG00000107677	missense	S/N	64	Olfr316	ENSMUST00000215071.1:c.191G>A	ENSMUSP00000151136.1:p.Ser64Asn	H-2-Kb	8	6	6	MYFLLNQL	MYFLLSQL	NetMHCpan	183.7	77.4	0.421	699	0.086	238.921	133.441	0.559	129.56	253.53	77.4	183.7	148.8469706	240.8463117	137.3219621	236.9954455	M4_p20	0.842857143	0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.088	699	0	0	NA	11qB1.3	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.48147959	sgMsh2	cell line
chr11	72058021	72058021	G	A	ENSMUST00000075258.12	1	ENSMUSG00000040543	missense	R/W	769	Pitpnm3	ENSMUST00000075258.12:c.2305C>T	ENSMUSP00000074737.6:p.Arg769Trp	H-2-Kb	8	9	3	VVWHWQDL	VVRHWQDL	NetMHCpan	164	1200.7	7.321	170	0.265	222.002	907.754	4.089	1202.31	270.69	1200.7	164	614.8086937	260.4593785	592.570463	183.5439188	M4_p20	-0.571428571	-0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.281	170	0	0	NA	11qB4	chr11-69590981-82929860	5	4	1	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr11	58720289	58720289	A	G	ENSMUST00000214728.1	5	ENSMUSG00000108265	missense	V/A	253	Olfr318	ENSMUST00000214728.1:c.758T>C	ENSMUSP00000149053.1:p.Val253Ala	H-2-Kb	8	6	6	ASLFYATT	ASLFYVTT	NetMHCpan	150.5	446.6	2.967	439	0.157	215.386	622.033	2.888	2155.94	299.61	446.6	150.5	740.8665723	256.2949211	503.1992672	174.4777291	M4_p20	0.7	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.159	439	0	0	NA	11qB1.3	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.869946077	sgMsh2	cell line
chr10	129902575	129902575	G	A	ENSMUST00000071557.1	NA	ENSMUSG00000061961	missense	A/V	51	Olfr815	ENSMUST00000071557.1:c.152C>T	ENSMUSP00000071488.1:p.Ala51Val	H-2-Kb	8	8	4	AIIVLTLL	AIIALTLL	NetMHC	351.89	464.82	1.321	327	0.193	432.513	465.6	1.076	464.82	351.89	448.3	466	466.380088	447.4453509	491.7450535	417.5802981	M4_p20	3.414285714	3.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.198	327	0	0	NA	10qD3	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr11	57528173	57528173	A	T	ENSMUST00000020830.13	1	ENSMUSG00000020522	missense	D/V	53	Mfap3	ENSMUST00000020830.13:c.158A>T	ENSMUSP00000020830.7:p.Asp53Val	H-2-Kb	8	4	8	SAGSYSGV	SAGSYSGD	NetMHC	397.02	22519.42	56.721	156	0.173	446.118	12796.838	28.685	22519.42	397.02	29869.5	1113.8	3074.255792	459.9811133	2458.895091	432.2549746	M4_p20	0.328571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.19	156	0	0	NA	11qB1.3	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr11	70681057	70681057	CG	C	ENSMUST00000036299.13	1	ENSMUSG00000040712	FS	P/X	476	Camta2	ENSMUST00000036299.13:c.1427del	ENSMUSP00000043792.7:p.Pro476ArgfsTer64	H-2-Kb	8	43	0	SVFRHSQT	NA	SMMPMBEC	294.944	NA	NA	54	0.352	447.523	NA	NA	NA	448.63	NA	1184.2	NA	446.4162552	NA	294.9442949	M4_p20	-0.814285714	-0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.327	54	0	0	NA	11qB3	chr11-69590981-82929860	5	4	1	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr11	58720289	58720289	A	G	ENSMUST00000214728.1	5	ENSMUSG00000108265	missense	V/A	253	Olfr318	ENSMUST00000214728.1:c.758T>C	ENSMUSP00000149053.1:p.Val253Ala	H-2-Kb	8	7	5	SLFYATTL	SLFYVTTL	NetMHCpan	71.7	76.1	1.061	439	0.157	442.323	346.133	0.783	365.16	472.43	76.1	71.7	347.3281635	442.3234863	344.9371732	442.3234863	M4_p20	1.357142857	1.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.159	439	0	0	NA	11qB1.3	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.869946077	sgMsh2	cell line
chr10	129790687	129790687	T	A	ENSMUST00000214206.1	5	ENSMUSG00000069421	missense	N/Y	301	Olfr810	ENSMUST00000214206.1:c.901A>T	ENSMUSP00000149044.1:p.Asn301Tyr	H-2-Kb	8	9	3	FIYTVHRI	FINTVHRI	SMM	272.734	3870.259	14.191	308	0.218	347.333	7459.158	21.476	13611.32	506.16	10761.7	400.4	3870.258739	272.7344509	4156.616909	294.2659418	M4_p20	0.5	0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.217	308	0	0	NA	10qD3	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr11	50237259	50237259	T	A	ENSMUST00000102772.3	1	ENSMUSG00000020377	missense	N/I	55	Ltc4s	ENSMUST00000102772.3:c.164A>T	ENSMUSP00000099833.3:p.Asn55Ile	H-2-Kb	8	11	1	ICSEYFPL	NCSEYFPL	SMMPMBEC	163.207	1944.196	11.912	33	0.182	262.12	3149.402	12.015	8197	536.95	3700.2	307.1	2598.603386	217.1400833	1944.195797	163.2074578	M4_p20	0.271428571	0.371428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.218	33	0	0	NA	11qB1.3	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr10	130472110	130472110	CA	C	ENSMUST00000164227.3	5	ENSMUSG00000091511	FS	L/X	753	Vmn2r87	ENSMUST00000164227.3:c.2258del	ENSMUSP00000129215.2:p.Leu753TrpfsTer25	H-2-Kb	8	15	0	ASLWLSWL	NA	SMM	312.421	NA	NA	394	0.231	407.641	NA	NA	NA	717.62	NA	457.4	NA	312.4208431	NA	357.8821189	M4_p20	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.232	394	0	0	NA	10qD3	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr10	130472110	130472110	CA	C	ENSMUST00000164227.3	5	ENSMUSG00000091511	FS	L/X	753	Vmn2r87	ENSMUST00000164227.3:c.2258del	ENSMUSP00000129215.2:p.Leu753TrpfsTer25	H-2-Kb	8	19	0	LSWLGTFL	NA	SMMPMBEC	307.426	NA	NA	394	0.231	420.694	NA	NA	NA	1101.66	NA	318.1	NA	523.2870654	NA	307.4255792	M4_p20	1.085714286	1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.232	394	0	0	NA	10qD3	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr11	58720289	58720289	A	G	ENSMUST00000214728.1	5	ENSMUSG00000108265	missense	V/A	253	Olfr318	ENSMUST00000214728.1:c.758T>C	ENSMUSP00000149053.1:p.Val253Ala	H-2-Kb	9	6	6	ASLFYATTL	ASLFYVTTL	NetMHCpan	22.7	21.8	0.96	439	0.157	156.793	122.872	0.784	47.02	56.99	21.8	22.7	251.2522734	270.4643321	198.7238535	256.5960697	M4_p20	1.357142857	1.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.159	439	0	0	NA	11qB1.3	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.869946077	sgMsh2	cell line
chr11	73814764	73814764	A	C	ENSMUST00000144724.2	2	ENSMUSG00000061984	missense	V/G	106	Olfr392	ENSMUST00000144724.2:c.317T>G	ENSMUSP00000123649.2:p.Val106Gly	H-2-Kb	9	4	8	TQLYFFMGF	TQLYFFMVF	NetMHC	59.64	327.61	5.493	545	0.246	153.478	304.481	1.984	327.61	59.64	372.3	124.1	279.3251239	182.8563304	281.3519957	226.073678	M4_p20	1.771428571	1.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.241	545	0	0	NA	11qB4	chr11-69590981-82929860	5	4	1	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr11	34688463	34688463	A	T	ENSMUST00000093193.11	1	ENSMUSG00000020143	missense	L/M	708	Dock2	ENSMUST00000093193.11:c.2122T>A	ENSMUSP00000090884.5:p.Leu708Met	H-2-Kb	9	11	1	MAYKKLMTV	LAYKKLMTV	NetMHCpan	53.3	93.4	1.752	413	0.262	111.459	136.253	1.222	92.9	63.29	93.4	53.3	179.1059444	159.628341	191.9773533	191.9773533	M4_p20	0.014285714	0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.254	413	0	0	NA	11qA4	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr10	129626025	129626025	A	G	ENSMUST00000204979.2	2	ENSMUSG00000095002	missense	L/P	12	Olfr798	ENSMUST00000204979.2:c.35T>C	ENSMUSP00000144716.1:p.Leu12Pro	H-2-Kb	9	4	8	TSVSEFIPL	TSVSEFILL	NetMHC	66.41	157	2.364	80	0.125	133.399	221.183	1.658	157	66.41	211.1	85.2	231.2650474	181.5975563	301.4740949	216.3963843	M4_p20	1.342857143	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.137	80	0	0	NA	10qD3	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr11	34688463	34688463	A	T	ENSMUST00000093193.11	1	ENSMUSG00000020143	missense	L/M	708	Dock2	ENSMUST00000093193.11:c.2122T>A	ENSMUSP00000090884.5:p.Leu708Met	H-2-Kb	9	3	9	IQQHFSATM	IQQHFSATL	NetMHC	108.3	43.99	0.406	413	0.262	432.806	302.966	0.7	43.99	108.3	87	183.1	518.9314595	682.5115418	629.8686601	853.5913393	M4_p20	-0.242857143	-0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.254	413	0	0	NA	11qA4	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr11	58720289	58720289	A	G	ENSMUST00000214728.1	5	ENSMUSG00000108265	missense	V/A	253	Olfr318	ENSMUST00000214728.1:c.758T>C	ENSMUSP00000149053.1:p.Val253Ala	H-2-Kb	9	5	7	VASLFYATT	VASLFYVTT	NetMHC	116.64	846.65	7.259	439	0.157	149.987	327.309	2.182	846.65	116.64	389.7	117.9	264.9171047	183.7003569	246.7459312	182.0748664	M4_p20	0.7	1.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.159	439	0	0	NA	11qB1.3	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.869946077	sgMsh2	cell line
chr11	67211360	67211360	C	A	ENSMUST00000124516.7	1	ENSMUSG00000056328	missense	R/S	826	Myh1	ENSMUST00000124516.7:c.2476C>A	ENSMUSP00000117569.1:p.Arg826Ser	H-2-Kb	9	6	6	IQYNVSAFM	IQYNVRAFM	NetMHC	125.35	144.71	1.154	352	0.247	385.659	420.869	1.091	144.71	125.35	131.9	140.2	830.0609824	631.1171763	697.02764	656.5230826	M4_p20	0.728571429	0.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.247	352	0	0	NA	11qB3	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr11	50237259	50237259	T	A	ENSMUST00000102772.3	1	ENSMUSG00000020377	missense	N/I	55	Ltc4s	ENSMUST00000102772.3:c.164A>T	ENSMUSP00000099833.3:p.Asn55Ile	H-2-Kb	9	10	2	VICSEYFPL	VNCSEYFPL	SMM	116.174	87.722	0.755	33	0.182	137.523	100.849	0.733	107.02	148.79	115.7	213.3	87.72229799	116.1742828	94.67820161	126.255411	M4_p20	0.271428571	1.2	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.218	33	0	0	NA	11qB1.3	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr11	59589837	59589837	T	G	ENSMUST00000215626.1	5	ENSMUSG00000048919	missense	Q/P	84	Olfr223	ENSMUST00000215626.1:c.251A>C	ENSMUSP00000149991.1:p.Gln84Pro	H-2-Kb	9	8	4	IVPPLLVNL	IVPQLLVNL	NetMHCpan	129.6	141.4	1.091	178	0.213	391.079	352.033	0.9	130.07	151.04	141.4	129.6	588.9928191	631.1171763	562.6651281	673.3641643	M4_p20	1.271428571	2.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.207	178	0	0	NA	11qB1.3	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr11	61546578	61546578	A	C	ENSMUST00000179936.7	1	ENSMUSG00000001036	missense	I/S	56	Epn2	ENSMUST00000179936.7:c.167T>G	ENSMUSP00000136950.1:p.Ile56Ser	H-2-Kb	9	6	6	VAFSESMSM	VAFSEIMSM	NetMHCpan	123.9	82.3	0.664	139	0.23	145.532	154.465	1.061	140.62	155.51	82.3	123.9	168.310031	135.5532704	254.8296748	263.7849417	M4_p20	0.1	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.222	139	0	0	NA	11qB2	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr11	76066765	76066765	G	T	ENSMUST00000056601.10	1	ENSMUSG00000017288	missense	T/K	664	Vps53	ENSMUST00000056601.10:c.1991C>A	ENSMUSP00000061317.4:p.Thr664Lys	H-2-Kb	9	5	7	STRKYFKQF	STRKYFTQF	NetMHC	208.33	76.27	0.366	442	0.226	257.978	114.528	0.444	76.27	208.33	90.3	309.4	167.1513929	278.6826939	138.755434	237.2739171	M4_p20	-1.642857143	-1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.22	442	0	0	NA	11qB5	chr11-69590981-82929860	5	4	1	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr11	69944246	69944246	A	G	ENSMUST00000018710.12	1	ENSMUSG00000018566	missense	M/T	380	Slc2a4	ENSMUST00000018710.12:c.1139T>C	ENSMUSP00000018710.6:p.Met380Thr	H-2-Kb	9	11	1	TSYVSIVAI	MSYVSIVAI	NetMHCpan	173.5	137.8	0.794	46	0.109	288.038	313.641	1.089	235.44	232.32	137.8	173.5	391.8411118	385.5760057	405.7420321	343.7557727	M4_p20	2.442857143	2.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.155	46	0	0	NA	11qB3	chr11-69590981-82929860	5	4	1	0.9	4.924223078	RARE KARYOTYPE	1	0.848060641	sgMsh2	cell line
chr10	130472110	130472110	CA	C	ENSMUST00000164227.3	5	ENSMUSG00000091511	FS	L/X	753	Vmn2r87	ENSMUST00000164227.3:c.2258del	ENSMUSP00000129215.2:p.Leu753TrpfsTer25	H-2-Kb	9	9	3	GSWLWGASL	NA	NetMHCpan	270.2	NA	NA	394	0.231	374.862	NA	NA	NA	300.72	NA	270.2	NA	563.7804345	NA	449.0037829	M4_p20	0.914285714	0.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.232	394	0	0	NA	10qD3	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr11	58757857	58757857	G	A	ENSMUST00000215071.1	5	ENSMUSG00000107677	missense	S/N	64	Olfr316	ENSMUST00000215071.1:c.191G>A	ENSMUSP00000151136.1:p.Ser64Asn	H-2-Kb	9	5	7	PMYFLLNQL	PMYFLLSQL	SMM	69.841	60.969	0.873	699	0.086	256.406	183.625	0.716	298.82	430.35	478.1	884.5	60.9691303	69.84092778	68.43054518	82.46126636	M4_p20	0.842857143	0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.088	699	0	0	NA	11qB1.3	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.48147959	sgMsh2	cell line
chr10	130472110	130472110	CA	C	ENSMUST00000164227.3	5	ENSMUSG00000091511	FS	L/X	753	Vmn2r87	ENSMUST00000164227.3:c.2258del	ENSMUSP00000129215.2:p.Leu753TrpfsTer25	H-2-Kb	9	17	0	LWLSWLGTF	NA	SMM	245.533	NA	NA	394	0.231	456.634	NA	NA	NA	499.03	NA	2307.2	NA	245.5330734	NA	414.2380608	M4_p20	1.085714286	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.232	394	0	0	NA	10qD3	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr11	120647724	120647724	G	A	ENSMUST00000026134.2	1	ENSMUSG00000025141	missense	A/V	95	Myadml2	ENSMUST00000026134.2:c.284C>T	ENSMUSP00000026134.2:p.Ala95Val	H-2-Db	9	5	7	AAFAMLVTL	AAFAMLATL	SMMPMBEC	121.219	101.758	0.839	47	0.213	161.774	123.054	0.761	364.73	357	114.7	156.2	131.4074537	167.3477972	101.7583368	121.2188055	M4_p20	2.514285714	2.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.265	47	0	0	NA	11qE2	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr11	95969851	95969851	T	G	ENSMUST00000013559.2	1	ENSMUSG00000013415	missense	S/R	359	Igf2bp1	ENSMUST00000013559.2:c.1075A>C	ENSMUSP00000013559.2:p.Ser359Arg	H-2-Db	9	8	4	AAMRLQSHL	AAMSLQSHL	SMM	336.217	330.842	0.984	138	0.275	466.447	489.283	1.049	583.59	561.66	681.7	531.5	330.8415143	336.2172565	394.9753567	401.39319	M4_p20	-0.357142857	0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.291	138	0	0	NA	11qD	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr11	84897560	84897560	A	G	ENSMUST00000093969.10	5	ENSMUSG00000020527	missense	T/A	333	Myo19	ENSMUST00000093969.10:c.997A>G	ENSMUSP00000091502.4:p.Thr333Ala	H-2-Kb	8	7	5	VSVRASAL	VSVRTSAL	NetMHC	34.5	51.46	1.492	43	0.279	81.268	107.865	1.327	51.46	34.5	210.1	150.6	110.5961477	75.29046857	105.1332282	87.24489012	M4_p20	0.785714286	0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.251	43	0	0	NA	11qC	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr12	31709074	31709074	T	C	ENSMUST00000236002.1	NA	ENSMUSG00000044067	missense	M/V	350	Gpr22	ENSMUST00000236002.1:c.1048A>G	ENSMUSP00000158030.1:p.Met350Val	H-2-Kb	8	7	5	RVFKVSLL	RVFKMSLL	NetMHCpan	110.6	49	0.443	392	0.186	180.435	110.426	0.612	64.99	136.1	49	110.6	166.241711	224.7708563	155.8619122	233.2061504	M4_p20	2.014285714	2.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.187	392	0	0	NA	12qA3	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr11	114696809	114696809	G	T	ENSMUST00000045779.5	1	ENSMUSG00000034714	missense	R/M	212	Ttyh2	ENSMUST00000045779.5:c.635G>T	ENSMUSP00000037821.5:p.Arg212Met	H-2-Kb	8	11	1	MWLSYLLL	RWLSYLLL	SMM	137.639	273.363	1.986	42	0.31	143.84	275.265	1.914	258.53	142.89	280.2	165.5	273.3631687	137.6385219	277.1660292	144.7904774	M4_p20	1.742857143	1.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.333	42	0	0	NA	11qE2	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr11	114696809	114696809	G	T	ENSMUST00000045779.5	1	ENSMUSG00000034714	missense	R/M	212	Ttyh2	ENSMUST00000045779.5:c.635G>T	ENSMUSP00000037821.5:p.Arg212Met	H-2-Kb	8	4	8	TAYVEYYM	TAYVEYYR	NetMHCpan	83.9	3075.7	36.659	42	0.31	265.145	2936.503	11.075	5416.13	183.76	3075.7	83.9	2493.10173	447.4453509	2797.306149	346.5293309	M4_p20	0.071428571	0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.333	42	0	0	NA	11qE2	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr12	24955384	24955384	T	C	ENSMUST00000110942.10	1	ENSMUSG00000020646	missense	V/A	386	Mboat2	ENSMUST00000110942.10:c.1157T>C	ENSMUSP00000106567.3:p.Val386Ala	H-2-Kb	8	5	7	LTFLTGAL	LTFLTGVL	SMMPMBEC	126.398	284.276	2.249	336	0.188	148.313	332.574	2.242	970.17	184.97	290.4	137.5	374.7485835	159.1255801	284.2758718	126.3979412	M4_p20	1.485714286	1.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.187	336	0	0	NA	12qA1.3	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr11	117772845	117772845	T	C	ENSMUST00000026659.9	1	ENSMUSG00000025572	missense	I/V	514	Tmc6	ENSMUST00000026659.9:c.1540A>G	ENSMUSP00000026659.3:p.Ile514Val	H-2-Kb	8	10	2	LVLKMAVL	LILKMAVL	SMMPMBEC	395.13	281.67	0.713	113	0.274	457.257	401.56	0.878	565.93	825.08	490.7	423.9	312.4208431	490.6140712	281.6696149	395.1299959	M4_p20	2.257142857	2.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.302	113	0	0	NA	11qE2	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr12	31708932	31708932	A	G	ENSMUST00000236002.1	NA	ENSMUSG00000044067	missense	I/T	397	Gpr22	ENSMUST00000236002.1:c.1190T>C	ENSMUSP00000158030.1:p.Ile397Thr	H-2-Kb	8	8	4	GTTTFHPL	GTTIFHPL	SMMPMBEC	181.443	200.789	1.107	547	0.207	344.511	294.142	0.854	1035.85	893.41	338.4	454.2	249.8848923	234.8226582	200.7890385	181.4429089	M4_p20	-0.042857143	-0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.204	547	0	0	NA	12qA3	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr12	31709410	31709410	T	C	ENSMUST00000236002.1	NA	ENSMUSG00000044067	missense	S/G	238	Gpr22	ENSMUST00000236002.1:c.712A>G	ENSMUSP00000158030.1:p.Ser238Gly	H-2-Kb	9	9	3	STGEYYTEL	STSEYYTEL	NetMHC	37.25	32.97	0.885	367	0.123	75.815	105.246	1.388	32.97	37.25	31.7	45.4	181.1798935	108.9205937	177.521108	106.2306894	M4_p20	-0.985714286	-0.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.139	367	0	0	NA	12qA3	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.760518898	sgMsh2	cell line
chr11	84897560	84897560	A	G	ENSMUST00000093969.10	5	ENSMUSG00000020527	missense	T/A	333	Myo19	ENSMUST00000093969.10:c.997A>G	ENSMUSP00000091502.4:p.Thr333Ala	H-2-Kb	9	7	5	VSVRASALL	VSVRTSALL	NetMHC	40.67	34.63	0.851	43	0.279	193.843	186.865	0.964	34.63	40.67	157.9	128.8	215.8291001	258.8868552	342.1763584	383.0451784	M4_p20	1.442857143	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.251	43	0	0	NA	11qC	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr11	98397994	98397994	G	A	ENSMUST00000090827.11	1	ENSMUSG00000038208	missense	L/F	112	Pgap3	ENSMUST00000090827.11:c.334C>T	ENSMUSP00000088337.5:p.Leu112Phe	H-2-Kb	9	7	5	AVASFLNGL	AVASLLNGL	NetMHC	84.75	1444.96	17.05	83	0.265	141.055	1231.037	8.727	1444.96	84.75	1359.9	113.8	618.1729539	168.310031	1102.173589	338.259498	M4_p20	1.071428571	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	83	0	0	NA	11qD	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr11	120134832	120134832	A	G	ENSMUST00000103018.10	1	ENSMUSG00000061306	missense	M/T	226	Slc38a10	ENSMUST00000103018.10:c.677T>C	ENSMUSP00000099307.4:p.Met226Thr	H-2-Kb	9	11	1	TSSIFASSL	MSSIFASSL	NetMHCpan	80.7	63.8	0.791	289	0.225	321.872	325.304	1.011	80.3	100.18	63.8	80.7	570.3087043	561.1900987	641.5787927	543.5631415	M4_p20	1.5	1.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.212	289	0	0	NA	11qE2	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr11	114696809	114696809	G	T	ENSMUST00000045779.5	1	ENSMUSG00000034714	missense	R/M	212	Ttyh2	ENSMUST00000045779.5:c.635G>T	ENSMUSP00000037821.5:p.Arg212Met	H-2-Kb	9	10	2	YMWLSYLLL	YRWLSYLLL	SMM	69.36	480.961	6.934	42	0.31	102.668	740.986	7.217	923.3	117.18	914.1	231.9	480.961153	69.36014622	567.8714044	88.15561915	M4_p20	1.742857143	1.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.333	42	0	0	NA	11qE2	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr12	31547124	31547124	T	C	ENSMUST00000001253.7	1	ENSMUSG00000020651	missense	N/S	248	Slc26a4	ENSMUST00000001253.7:c.743A>G	ENSMUSP00000001253.7:p.Asn248Ser	H-2-Kb	9	5	7	VSTKNYSGI	VSTKNYNGI	NetMHC	120.76	277.9	2.301	248	0.097	269.151	316.632	1.176	277.9	120.76	586.2	300.6	296.558243	258.8868552	336.7053368	279.4151821	M4_p20	-0.871428571	-0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.112	248	0	0	NA	12qA2	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.612792205	sgMsh2	cell line
chr11	120647724	120647724	G	A	ENSMUST00000026134.2	1	ENSMUSG00000025141	missense	A/V	95	Myadml2	ENSMUST00000026134.2:c.284C>T	ENSMUSP00000026134.2:p.Ala95Val	H-2-Kb	9	5	7	AAFAMLVTL	AAFAMLATL	NetMHCpan	97.7	32.7	0.335	47	0.213	163.882	76.756	0.468	31.07	153.54	32.7	97.7	120.8119794	174.2248102	129.4941055	175.4890407	M4_p20	2.514285714	2.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.265	47	0	0	NA	11qE2	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr11	116047690	116047690	T	C	ENSMUST00000021116.11	1	ENSMUSG00000020770	missense	F/L	40	Unk	ENSMUST00000021116.11:c.118T>C	ENSMUSP00000021116.5:p.Phe40Leu	H-2-Kb	9	3	9	QHYTYLKEL	QHYTYLKEF	NetMHC	157.48	600.28	3.812	148	0.149	176.351	480.118	2.723	600.28	157.48	601.2	194.9	266.1399065	157.8010905	359.9564831	208.0894201	M4_p20	-0.442857143	-0.442857143	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.159	148	0	0	NA	11qE2	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.869946077	sgMsh2	cell line
chr11	95969851	95969851	T	G	ENSMUST00000013559.2	1	ENSMUSG00000013415	missense	S/R	359	Igf2bp1	ENSMUST00000013559.2:c.1075A>C	ENSMUSP00000013559.2:p.Ser359Arg	H-2-Kb	9	8	4	AAMRLQSHL	AAMSLQSHL	NetMHC	159.08	222.94	1.401	138	0.275	409.595	316.523	0.773	222.94	159.08	226.5	212.3	406.5462879	606.8900259	544.816184	635.696763	M4_p20	-0.357142857	0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.291	138	0	0	NA	11qD	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr11	96961460	96961460	T	C	ENSMUST00000107624.7	1	ENSMUSG00000018678	missense	T/A	213	Sp2	ENSMUST00000107624.7:c.637A>G	ENSMUSP00000103250.2:p.Thr213Ala	H-2-Kb	9	6	6	SNMTLALPL	SNMTLTLPL	NetMHCpan	73.5	82.5	1.122	75	0.28	297.632	247.629	0.832	173.07	174.43	82.5	73.5	322.1884741	420.8332054	339.0392667	472.3348608	M4_p20	1.828571429	1.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.245	75	0	0	NA	11qD	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr11	87035223	87035223	T	C	ENSMUST00000020804.7	1	ENSMUSG00000061666	missense	T/A	299	Gdpd1	ENSMUST00000020804.7:c.895A>G	ENSMUSP00000020804.7:p.Thr299Ala	H-2-Kb	9	9	3	VMADYPTKL	VMTDYPTKL	NetMHCpan	134	233	1.739	63	0.159	178.725	248.628	1.391	288.51	222.06	233	134	258.8868552	177.8729877	238.3691237	179.5767056	M4_p20	-0.771428571	0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.178	63	0	0	NA	11qC	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.973901898	sgMsh2	cell line
chr11	114696809	114696809	G	T	ENSMUST00000045779.5	1	ENSMUSG00000034714	missense	R/M	212	Ttyh2	ENSMUST00000045779.5:c.635G>T	ENSMUSP00000037821.5:p.Arg212Met	H-2-Kb	9	11	1	MWLSYLLLF	RWLSYLLLF	SMM	95.964	182.436	1.901	42	0.31	257.265	431.065	1.676	474.65	306.44	1518.2	1790.2	182.4357725	95.96436635	387.4806325	208.0894201	M4_p20	2.271428571	2.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.333	42	0	0	NA	11qE2	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr11	114696809	114696809	G	T	ENSMUST00000045779.5	1	ENSMUSG00000034714	missense	R/M	212	Ttyh2	ENSMUST00000045779.5:c.635G>T	ENSMUSP00000037821.5:p.Arg212Met	H-2-Kb	9	4	8	TAYVEYYMW	TAYVEYYRW	SMMPMBEC	259.567	205.707	0.793	42	0.31	322.139	237.543	0.737	228.42	336.59	918.1	1252.7	246.6664026	307.6876041	205.7074402	259.5673122	M4_p20	-0.314285714	0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.333	42	0	0	NA	11qE2	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr12	24955384	24955384	T	C	ENSMUST00000110942.10	1	ENSMUSG00000020646	missense	V/A	386	Mboat2	ENSMUST00000110942.10:c.1157T>C	ENSMUSP00000106567.3:p.Val386Ala	H-2-Kb	9	5	7	LTFLTGALM	LTFLTGVLM	NetMHC	354.25	977.61	2.76	336	0.188	486.696	929.583	1.91	977.61	354.25	1440.3	432.5	780.0276543	540.8913049	881.5561915	650.5040428	M4_p20	1.857142857	1.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.187	336	0	0	NA	12qA1.3	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr11	114696809	114696809	G	T	ENSMUST00000045779.5	1	ENSMUSG00000034714	missense	R/M	212	Ttyh2	ENSMUST00000045779.5:c.635G>T	ENSMUSP00000037821.5:p.Arg212Met	H-2-Kb	9	5	7	AYVEYYMWL	AYVEYYRWL	SMM	155.995	227.044	1.455	42	0.31	197.912	264.024	1.334	442.35	403.86	283	232.8	227.0439846	155.9947563	245.0473442	163.0234201	M4_p20	0.414285714	0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.333	42	0	0	NA	11qE2	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr11	114696809	114696809	G	T	ENSMUST00000045779.5	1	ENSMUSG00000034714	missense	R/M	212	Ttyh2	ENSMUST00000045779.5:c.635G>T	ENSMUSP00000037821.5:p.Arg212Met	H-2-Kb	9	8	4	EYYMWLSYL	EYYRWLSYL	SMM	195.934	237.744	1.213	42	0.31	255.051	250.159	0.981	416.04	419.64	215.5	310	237.7442379	195.9340881	262.57296	200.1013414	M4_p20	0.742857143	0.742857143	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.333	42	0	0	NA	11qE2	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr12	51999859	51999859	T	G	ENSMUST00000021339.7	1	ENSMUSG00000020956	missense	N/H	66	Dtd2	ENSMUST00000021339.7:c.196A>C	ENSMUSP00000021339.7:p.Asn66His	H-2-Kb	9	6	6	VNTLLHVKL	VNTLLNVKL	NetMHCpan	212.6	1257.5	5.915	75	0.107	402.088	1117.492	2.779	1647.25	460.42	1257.5	212.6	977.4847712	462.4981501	708.3534281	343.7557727	M4_p20	1.114285714	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.134	75	0	0	NA	12qC1	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.733162103	sgMsh2	cell line
chr12	31709074	31709074	T	C	ENSMUST00000236002.1	NA	ENSMUSG00000044067	missense	M/V	350	Gpr22	ENSMUST00000236002.1:c.1048A>G	ENSMUSP00000158030.1:p.Met350Val	H-2-Kb	9	11	1	VSLLIISTF	MSLLIISTF	SMM	438.642	1124.89	2.564	392	0.186	487.155	1193.722	2.45	1504.4	503.46	1013	486.5	1124.889855	438.6417848	1262.55411	487.8092149	M4_p20	2.557142857	2.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.187	392	0	0	NA	12qA3	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr11	102061618	102061618	G	A	ENSMUST00000017458.10	1	ENSMUSG00000017314	missense	A/V	343	Mpp2	ENSMUST00000017458.10:c.1028C>T	ENSMUSP00000017458.3:p.Ala343Val	H-2-Kb	9	5	7	LIYEEVVRM	LIYEEVARM	NetMHCpan	384	183	0.477	39	0.256	422.457	242.216	0.573	185.13	506.32	183	384	299.3022626	431.6283877	304.9650004	413.2853397	M4_p20	-0.357142857	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.268	39	0	0	NA	11qD	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr12	10394644	10394644	G	A	ENSMUST00000020947.6	1	ENSMUSG00000020621	missense	G/D	165	Rdh14	ENSMUST00000020947.6:c.494G>A	ENSMUSP00000020947.5:p.Gly165Asp	H-2-Kb	9	7	5	VNHLDHFLL	VNHLGHFLL	SMM	345.231	274.859	0.796	150	0.127	422.662	286.615	0.678	298.37	541.74	187.1	481.2	274.859024	345.2311699	307.0789168	364.1245828	M4_p20	0.614285714	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.144	150	0	0	NA	12qA1.1	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.787875692	sgMsh2	cell line
chr11	100696986	100696986	G	A	ENSMUST00000017974.12	1	ENSMUSG00000017830	missense	P/S	582	Dhx58	ENSMUST00000017974.12:c.1744C>T	ENSMUSP00000017974.6:p.Pro582Ser	H-2-Kb	9	11	1	SNFSVYYTT	PNFSVYYTT	SMM	351.649	851.354	2.421	65	0.308	419.758	4360.248	10.388	7816.41	564.55	7509.2	365	851.3536455	351.6494966	1211.29521	474.5150595	M4_p20	0.314285714	0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.318	65	0	0	NA	11qD	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr11	114987405	114987405	T	G	ENSMUST00000045075.2	1	ENSMUSG00000034641	missense	T/P	94	Cd300ld	ENSMUST00000045075.2:c.280A>C	ENSMUSP00000047022.2:p.Thr94Pro	H-2-Kb	9	4	8	RDFIFTVPM	RDFIFTVTM	SMMPMBEC	413.285	752.056	1.82	499	0.208	465.648	927.044	1.991	2749.39	1529.58	988.9	447	865.1870294	484.2950164	752.0556875	413.2853397	M4_p20	1.985714286	1.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.213	499	0	0	NA	11qE2	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr12	103950807	103950807	A	G	ENSMUST00000122229.7	1	ENSMUSG00000072849	missense	V/A	201	Serpina1e	ENSMUST00000122229.7:c.602T>C	ENSMUSP00000113606.1:p.Val201Ala	H-2-Db	9	10	2	FALANYILF	FVLANYILF	NetMHC	10.9	298.56	27.391	323	0.034	33.881	270.226	7.976	298.56	10.9	616.6	30.9	241.8911616	37.8111599	235.2718676	36.86124504	M4_p20	1.7	1.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.047	323	0	0	NA	12qE	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.257153872	sgMsh2	cell line
chr12	69190025	69190025	GT	G	ENSMUST00000021356.5	1	ENSMUSG00000020973	FS	T/X	770	Dnaaf2	ENSMUST00000021356.5:c.2308del	ENSMUSP00000021356.5:p.Thr770LeufsTer12	H-2-Db	9	5	7	SSLLNKLWF	SSLLNKTVV	NetMHC	102.74	8.12	0.079	472	0.104	148.467	27.724	0.187	8.12	102.74	17.2	273.1	38.24899249	138.2356312	40.41755147	158.6974688	M4_p20	0.842857143	0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.104	472	0	0	NA	12qC2	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.569021333	sgMsh2	cell line
chr12	117974938	117974938	G	A	ENSMUST00000084806.6	1	ENSMUSG00000018581	missense	A/V	3265	Dnah11	ENSMUST00000084806.6:c.9794C>T	ENSMUSP00000081867.6:p.Ala3265Val	H-2-Kb	8	7	5	KSFAVAGL	KSFAAAGL	NetMHC	11.66	16.83	1.443	143	0.196	23.502	30.038	1.278	16.83	11.66	34.2	31.4	28.6906244	22.52890066	31.38629122	24.47597495	M4_p20	1.885714286	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.237	143	0	0	NA	12qF2	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr12	98275382	98275382	T	C	ENSMUST00000075072.5	1	ENSMUSG00000021886	missense	M/T	98	Gpr65	ENSMUST00000075072.5:c.293T>C	ENSMUSP00000074581.4:p.Met98Thr	H-2-Kb	8	6	6	VFFTYTNF	VFFTYMNF	SMMPMBEC	20.358	18.019	0.885	291	0.158	21.686	17.92	0.826	17.82	22.25	45.7	37.4	16.50973111	21.12224132	18.01938647	20.35822922	M4_p20	0.314285714	0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.148	291	0	0	NA	12qE	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.809761128	sgMsh2	cell line
chr13	22883342	22883342	G	T	ENSMUST00000095960.4	NA	ENSMUSG00000071490	missense	L/I	274	Vmn1r212	ENSMUST00000095960.4:c.820C>A	ENSMUSP00000093655.2:p.Leu274Ile	H-2-Kb	8	9	3	VTIGYATF	VTLGYATF	NetMHCpan	64.5	66.5	1.031	202	0.218	107.041	102.098	0.954	69.38	66.26	66.5	64.5	161.7111628	187.8192059	134.8155538	147.8223152	M4_p20	0.857142857	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.205	202	0	0	NA	13qA3.1	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr13	45567607	45567607	C	A	ENSMUST00000180110.8	1	ENSMUSG00000046876	missense	D/Y	271	Atxn1	ENSMUST00000180110.8:c.811G>T	ENSMUSP00000137439.1:p.Asp271Tyr	H-2-Kb	8	7	5	VQYSYAGG	VQYSDAGG	SMM	23.974	734.074	30.62	99	0.04	57.645	8405.245	145.811	15905.3	82.65	17803.7	446.8	734.0742668	23.97397234	905.1905263	32.63923717	M4_p20	-0.842857143	-0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.059	99	0	0	NA	13qA5	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.32281018	sgMsh2	cell line
chr12	75716177	75716177	C	A	ENSMUST00000021450.5	1	ENSMUSG00000021054	missense	G/V	410	Sgpp1	ENSMUST00000021450.5:c.1229G>T	ENSMUSP00000021450.4:p.Gly410Val	H-2-Kb	8	8	4	ITYVMVGF	ITYGMVGF	NetMHCpan	71.7	131.8	1.838	264	0.231	126.749	402.15	3.173	373.04	92.9	131.8	71.7	585.787365	231.6007706	431.2608157	160.597951	M4_p20	1.528571429	1.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.23	264	0	0	NA	12qC3	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr13	54221267	54221267	TC	T	ENSMUST00000038101.3	1	ENSMUSG00000034987	FS	S/X	374	Hrh2	ENSMUST00000038101.3:c.1122del	ENSMUSP00000038170.3:p.Phe375SerfsTer53	H-2-Kb	8	26	0	SNHHYISV	NA	NetMHCpan	84.2	NA	NA	92	0.207	192.438	NA	NA	NA	148.97	NA	84.2	NA	235.9065504	NA	249.310173	M4_p20	-0.471428571	-0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.227	92	0	0	NA	13qB1	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr12	69190025	69190025	GT	G	ENSMUST00000021356.5	1	ENSMUSG00000020973	FS	T/X	770	Dnaaf2	ENSMUST00000021356.5:c.2308del	ENSMUSP00000021356.5:p.Thr770LeufsTer12	H-2-Kb	8	14	0	KTYLTLTL	NA	NetMHCpan	98.5	NA	NA	472	0.104	204.29	NA	NA	NA	217.21	NA	98.5	NA	205.466016	NA	203.114066	M4_p20	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.104	472	0	0	NA	12qC2	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.569021333	sgMsh2	cell line
chr12	103104843	103104843	CA	C	ENSMUST00000101099.11	1	ENSMUSG00000021198	FS	Q/X	1330	Unc79	ENSMUST00000101099.11:c.3994del	ENSMUSP00000098659.5:p.Met1332CysfsTer59	H-2-Kb	8	32	0	ITLTWANT	NA	SMMPMBEC	112.912	NA	NA	278	0.191	220.203	NA	NA	NA	238.69	NA	942.4	NA	201.7158386	NA	112.911974	M4_p20	-0.128571429	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.174	278	0	0	NA	12qE	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.952016462	sgMsh2	cell line
chr13	45567607	45567607	C	A	ENSMUST00000180110.8	1	ENSMUSG00000046876	missense	D/Y	271	Atxn1	ENSMUST00000180110.8:c.811G>T	ENSMUSP00000137439.1:p.Asp271Tyr	H-2-Kb	8	5	7	VVVQYSYA	VVVQYSDA	NetMHC	246.23	1961.32	7.965	99	0.04	301.582	1605.415	5.323	1961.32	246.23	3828.8	525.5	1249.510759	337.8625068	963.2521787	265.3016799	M4_p20	0.471428571	0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.059	99	0	0	NA	13qA5	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.32281018	sgMsh2	cell line
chr13	22293541	22293541	T	C	ENSMUST00000228382.1	NA	ENSMUSG00000069295	missense	S/P	117	Vmn1r196	ENSMUST00000228382.1:c.349T>C	ENSMUSP00000154358.1:p.Ser117Pro	H-2-Kb	8	9	3	RAPWWGRL	RASWWGRL	NetMHCpan	195.9	896.8	4.578	266	0.214	341.715	1061.965	3.108	1423.61	271.58	896.8	195.9	1129.11974	421.444121	994.8096742	411.8508816	M4_p20	-0.385714286	-0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	266	0	0	NA	13qA3.1	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr12	72556654	72556654	T	A	ENSMUST00000044352.7	1	ENSMUSG00000034501	missense	S/T	489	Pcnx4	ENSMUST00000044352.7:c.1465T>A	ENSMUSP00000038916.6:p.Ser489Thr	H-2-Kb	8	10	2	VTIGFTRA	VSIGFTRA	SMMPMBEC	216.641	129.64	0.598	308	0.149	273.909	146.801	0.536	79.74	275.71	178.1	397.8	163.9607892	272.1071791	129.6402918	216.6406749	M4_p20	0.4	0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.156	308	0	0	NA	12qC3	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.853532	sgMsh2	cell line
chr13	34044506	34044506	C	A	ENSMUST00000040656.7	1	ENSMUSG00000038286	missense	L/I	64	Bphl	ENSMUST00000040656.7:c.190C>A	ENSMUSP00000046168.6:p.Leu64Ile	H-2-Kb	8	10	2	IILLPGML	ILLLPGML	SMM	211.709	874.46	4.13	226	0.204	288.425	1025.33	3.555	2214.79	330.96	1176.2	468.4	874.4601036	211.7093311	840.8915726	245.8895091	M4_p20	2.257142857	2.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.208	226	0	0	NA	13qA3.3	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr13	23011606	23011606	T	G	ENSMUST00000228758.1	NA	ENSMUSG00000060024	missense	W/G	120	Vmn1r213	ENSMUST00000228758.1:c.358T>G	ENSMUSP00000153766.1:p.Trp120Gly	H-2-Kb	8	4	8	VNYMFSWG	VNYMFSWW	SMM	41.951	30.251	0.721	611	0.229	132.529	48.549	0.366	42.05	378.12	321.7	205.8	30.25101842	41.95077612	55.04780419	59.2570463	M4_p20	-0.314285714	0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.238	611	0	0	NA	13qA3.1	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr13	24981025	24981025	T	C	ENSMUST00000021773.12	5	ENSMUSG00000021340	missense	S/P	583	Gpld1	ENSMUST00000021773.12:c.1747T>C	ENSMUSP00000021773.5:p.Ser583Pro	H-2-Kb	8	5	7	FSWFGYPL	FSWFGYSL	NetMHCpan	65.1	109.5	1.682	153	0.327	162.825	338.301	2.078	534.83	383.38	109.5	65.1	384.3616066	186.0972691	292.2402293	139.5532644	M4_p20	0.228571429	0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.328	153	0	0	NA	13qA3.1	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr12	79261656	79261656	C	T	ENSMUST00000021547.7	1	ENSMUSG00000066440	missense	D/N	1705	Zfyve26	ENSMUST00000021547.7:c.5113G>A	ENSMUSP00000021547.6:p.Asp1705Asn	H-2-Kb	8	6	6	IGFTLNEV	IGFTLDEV	NetMHCpan	303.9	1187.3	3.907	236	0.195	375.252	970.102	2.585	1333.11	383.96	1187.3	303.9	696.209588	367.908651	752.9046857	382.5956254	M4_p20	0.385714286	0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.208	236	0	0	NA	12qC3	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr12	54685943	54685943	TG	T	ENSMUST00000161592.7	1	ENSMUSG00000054302	FS	H/X	127	Eapp	ENSMUST00000161592.7:c.381del	ENSMUSP00000123698.1:p.His127GlnfsTer52	H-2-Kb	8	53	0	SLFQTVML	NA	SMMPMBEC	306.719	NA	NA	192	0.359	372.068	NA	NA	NA	617.01	NA	379.6	NA	364.5356443	NA	306.71852	M4_p20	1.757142857	1.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.337	192	0	0	NA	12qC1	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr13	22883342	22883342	G	T	ENSMUST00000095960.4	NA	ENSMUSG00000071490	missense	L/I	274	Vmn1r212	ENSMUST00000095960.4:c.820C>A	ENSMUSP00000093655.2:p.Leu274Ile	H-2-Kb	9	11	1	IGYATFSPL	LGYATFSPL	NetMHC	3.48	6.63	1.905	202	0.218	25.253	49.219	1.949	6.63	3.48	9.7	5.1	88.73807432	45.40566075	104.2917608	53.36419961	M4_p20	0.571428571	0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.205	202	0	0	NA	13qA3.1	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr12	98275382	98275382	T	C	ENSMUST00000075072.5	1	ENSMUSG00000021886	missense	M/T	98	Gpr65	ENSMUST00000075072.5:c.293T>C	ENSMUSP00000074581.4:p.Met98Thr	H-2-Kb	9	5	7	SVFFTYTNF	SVFFTYMNF	NetMHCpan	31	33.7	1.087	291	0.158	50.82	51.291	1.009	31.09	34.48	33.7	31	68.88267433	67.15989369	103.5738214	93.37916798	M4_p20	0.314285714	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.148	291	0	0	NA	12qE	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.809761128	sgMsh2	cell line
chr13	8570039	8570039	A	C	ENSMUST00000064473.12	1	ENSMUSG00000052551	missense	K/T	187	Adarb2	ENSMUST00000064473.12:c.560A>C	ENSMUSP00000064775.6:p.Lys187Thr	H-2-Kb	9	11	1	TSFVQFPNA	KSFVQFPNA	NetMHC	55.09	95.18	1.728	71	0.169	267.019	400.309	1.499	95.18	55.09	169.5	119.8	631.1171763	416.0159675	731.5600821	414.2380608	M4_p20	0.428571429	0.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.199	71	0	0	NA	13qA1	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr12	69190025	69190025	GT	G	ENSMUST00000021356.5	1	ENSMUSG00000020973	FS	T/X	770	Dnaaf2	ENSMUST00000021356.5:c.2308del	ENSMUSP00000021356.5:p.Thr770LeufsTer12	H-2-Kb	9	11	1	LWFKTYLTL	NA	SMM	52.736	NA	NA	472	0.104	87.638	NA	NA	NA	123.24	NA	86.1	NA	52.73634174	NA	89.17641311	M4_p20	0.542857143	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.104	472	0	0	NA	12qC2	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.569021333	sgMsh2	cell line
chr12	72556654	72556654	T	A	ENSMUST00000044352.7	1	ENSMUSG00000034501	missense	S/T	489	Pcnx4	ENSMUST00000044352.7:c.1465T>A	ENSMUSP00000038916.6:p.Ser489Thr	H-2-Kb	9	10	2	VTIGFTRAF	VSIGFTRAF	NetMHC	135.99	77.66	0.571	308	0.149	241.68	150.693	0.624	77.66	135.99	132.3	200.8	169.0869148	282.5595563	216.3963843	351.7628732	M4_p20	0.9	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.156	308	0	0	NA	12qC3	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.853532	sgMsh2	cell line
chr13	54221267	54221267	TC	T	ENSMUST00000038101.3	1	ENSMUSG00000034987	FS	S/X	374	Hrh2	ENSMUST00000038101.3:c.1122del	ENSMUSP00000038170.3:p.Phe375SerfsTer53	H-2-Kb	9	26	0	SNHHYISVL	NA	NetMHCpan	68.7	NA	NA	92	0.207	178.271	NA	NA	NA	141.14	NA	68.7	NA	229.67303	NA	215.4021332	M4_p20	0.571428571	0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.227	92	0	0	NA	13qB1	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr12	118008803	118008803	A	G	ENSMUST00000084806.6	1	ENSMUSG00000018581	missense	F/S	2882	Dnah11	ENSMUST00000084806.6:c.8645T>C	ENSMUSP00000081867.6:p.Phe2882Ser	H-2-Kb	9	10	2	VSLLTDAHV	VFLLTDAHV	NetMHC	151.93	528.66	3.48	524	0.177	432.793	838.709	1.938	528.66	151.93	3378.6	1196.3	713.0336075	385.5760057	964.3840079	480.0096849	M4_p20	0.885714286	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.175	524	0	0	NA	12qF2	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.957487821	sgMsh2	cell line
chr12	75716177	75716177	C	A	ENSMUST00000021450.5	1	ENSMUSG00000021054	missense	G/V	410	Sgpp1	ENSMUST00000021450.5:c.1229G>T	ENSMUSP00000021450.4:p.Gly410Val	H-2-Kb	9	11	1	VMVGFSITF	GMVGFSITF	SMM	93.349	507.119	5.433	264	0.231	171.911	1429.349	8.314	2096.18	191.68	3962.6	381.5	507.1191374	93.34907095	762.5178243	152.1423079	M4_p20	1.771428571	2.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.23	264	0	0	NA	12qC3	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr12	116318844	116318844	A	C	ENSMUST00000100986.3	1	ENSMUSG00000021171	missense	E/A	138	Esyt2	ENSMUST00000100986.3:c.413A>C	ENSMUSP00000098548.2:p.Glu138Ala	H-2-Kb	9	5	7	FICQFIAKL	FICQFIEKL	NetMHC	274.03	1858.1	6.781	328	0.122	434.65	1868.7	4.299	1858.1	274.03	1879.3	413	1888.469608	820.5593529	1023.882217	456.2995075	M4_p20	1.142857143	2.2	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.133	328	0	0	NA	12qF2	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.727690744	sgMsh2	cell line
chr12	111678648	111678648	A	G	ENSMUST00000084947.9	1	ENSMUSG00000060950	missense	Y/C	6	Trmt61a	ENSMUST00000084947.9:c.17A>G	ENSMUSP00000082011.3:p.Tyr6Cys	H-2-Kb	9	1	6	MSFVACEEL	MSFVAYEEL	NetMHCpan	242.1	23.8	0.098	143	0.091	359.464	57.617	0.16	18.72	290.27	23.8	242.1	91.43448014	428.6570788	121.6886295	527.5334467	M4_p20	1.157142857	1.271428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.124	143	0	0	NA	12qF1	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.678448513	sgMsh2	cell line
chr12	98275382	98275382	T	C	ENSMUST00000075072.5	1	ENSMUSG00000021886	missense	M/T	98	Gpr65	ENSMUST00000075072.5:c.293T>C	ENSMUSP00000074581.4:p.Met98Thr	H-2-Kb	9	11	1	TNFYSSTAF	MNFYSSTAF	SMM	318.5	323.676	1.016	291	0.158	365.539	317.878	0.87	312.08	327.2	253.8	411.6	323.6756285	318.5004131	476.7053215	403.8778168	M4_p20	0.542857143	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.148	291	0	0	NA	12qE	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.809761128	sgMsh2	cell line
chr12	103950807	103950807	A	G	ENSMUST00000122229.7	1	ENSMUSG00000072849	missense	V/A	201	Serpina1e	ENSMUST00000122229.7:c.602T>C	ENSMUSP00000113606.1:p.Val201Ala	H-2-Kb	9	10	2	FALANYILF	FVLANYILF	SMM	340.494	382.922	1.125	323	0.034	400.253	477.294	1.192	491.94	400.33	1285	555.1	382.9217191	340.4944207	462.6472659	400.1750427	M4_p20	1.7	1.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.047	323	0	0	NA	12qE	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.257153872	sgMsh2	cell line
chr13	22883342	22883342	G	T	ENSMUST00000095960.4	NA	ENSMUSG00000071490	missense	L/I	274	Vmn1r212	ENSMUST00000095960.4:c.820C>A	ENSMUSP00000093655.2:p.Leu274Ile	H-2-Kb	9	3	9	INIQEFVTI	INIQEFVTL	NetMHCpan	111.6	38.2	0.342	202	0.218	443.979	145.484	0.328	94.97	434.8	38.2	111.6	225.4810248	559.8993973	195.99726	453.1583638	M4_p20	1.185714286	1.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.205	202	0	0	NA	13qA3.1	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr13	8570039	8570039	A	C	ENSMUST00000064473.12	1	ENSMUSG00000052551	missense	K/T	187	Adarb2	ENSMUST00000064473.12:c.560A>C	ENSMUSP00000064775.6:p.Lys187Thr	H-2-Kb	9	8	4	MALTSFVQF	MALKSFVQF	NetMHCpan	388.9	396.9	1.021	71	0.169	447.109	470.87	1.053	571.83	490.34	396.9	388.9	532.243051	558.6116644	409.4963169	403.8778168	M4_p20	1.228571429	1.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.199	71	0	0	NA	13qA1	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr13	23011606	23011606	T	G	ENSMUST00000228758.1	NA	ENSMUSG00000060024	missense	W/G	120	Vmn1r213	ENSMUST00000228758.1:c.358T>G	ENSMUSP00000153766.1:p.Trp120Gly	H-2-Kb	9	4	8	VNYMFSWGG	VNYMFSWWG	SMM	170.259	216.825	1.274	611	0.229	340.638	1369.609	4.021	3744.21	879.44	2505.2	494.1	216.825322	170.2589693	234.0183969	187.1759302	M4_p20	0.128571429	0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.238	611	0	0	NA	13qA3.1	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr13	75878849	75878849	T	G	ENSMUST00000022078.11	1	ENSMUSG00000021589	missense	K/N	468	Rhobtb3	ENSMUST00000022078.11:c.1404A>C	ENSMUSP00000022078.5:p.Lys468Asn	H-2-Db	9	7	5	YGVSNETFL	YGVSKETFL	NetMHC	4.07	552.12	135.656	244	0.246	38.329	1708.94	44.587	552.12	4.07	1286.7	11.1	2131.179353	65.55714019	2236.505652	66.61468828	M4_p20	0.328571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.242	244	0	0	NA	13qC1	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr14	45614188	45614188	T	C	ENSMUST00000087320.12	1	ENSMUSG00000037697	missense	Y/C	511	Ddhd1	ENSMUST00000087320.12:c.1532A>G	ENSMUSP00000084577.5:p.Tyr511Cys	H-2-Kb	8	8	4	IMYCTSPL	IMYYTSPL	NetMHC	11.28	6.72	0.596	248	0.194	26.327	19.907	0.756	6.72	11.28	8.5	16.2	35.54184757	37.30267702	31.31410475	36.45356443	M4_p20	0.542857143	0.642857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.187	248	0	0	NA	14qC1	chr14-44505690-52852156	4	3	1	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr14	29988224	29988224	G	T	ENSMUST00000224797.1	NA	ENSMUSG00000015971	missense	R/M	316	Actr8	ENSMUST00000224797.1:c.947G>T	ENSMUSP00000153076.1:p.Arg316Met	H-2-Kb	8	9	3	VSMCFYWL	VSRCFYWL	NetMHCpan	18	44.3	2.461	160	0.2	18.823	33.596	1.785	38.96	18.69	44.3	18	19.57672319	18.95570756	28.23189304	19.26371303	M4_p20	1.142857143	1.2	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	160	0	0	NA	14qB	chr14-19751082-41183403	4	3	1	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr14	52036009	52036009	A	G	ENSMUST00000214071.1	5	ENSMUSG00000044286	missense	M/T	34	Olfr221	ENSMUST00000214071.1:c.101T>C	ENSMUSP00000150675.1:p.Met34Thr	H-2-Kb	8	10	2	VTYAITVL	VMYAITVL	NetMHCpan	26.2	23.8	0.908	119	0.471	60.149	92.464	1.537	54.39	47.73	23.8	26.2	137.3219621	75.63799359	130.5389154	72.56713881	M4_p20	1.657142857	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.475	119	0	0	NA	14qC2	chr14-44505690-52852156	4	3	1	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr14	103126690	103126690	A	T	ENSMUST00000159855.7	1	ENSMUSG00000033004	missense	L/Q	4391	Mycbp2	ENSMUST00000159855.7:c.13172T>A	ENSMUSP00000124710.1:p.Leu4391Gln	H-2-Kb	8	10	2	KQFWLMAL	KLFWLMAL	NetMHCpan	93.9	139.2	1.482	242	0.364	121.23	207.575	1.712	301.67	110.41	139.2	93.9	193.9724271	132.0504848	221.1770188	174.0764414	M4_p20	1.385714286	1.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.354	242	0	0	NA	14qE2.3	chr14-53294676-123291781	4	3	1	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr14	65975611	65975611	T	G	ENSMUST00000022616.13	1	ENSMUSG00000022037	missense	F/V	149	Clu	ENSMUST00000022616.13:c.445T>G	ENSMUSP00000022616.6:p.Phe149Val	H-2-Kb	8	8	4	SSPVYFWM	SSPFYFWM	NetMHCpan	60.6	40.4	0.667	115	0.357	147.752	201.93	1.367	223.25	116.55	40.4	60.6	180.6092545	178.9534189	234.2825811	206.8902384	M4_p20	0.614285714	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.338	115	0	0	NA	14qD1	chr14-53294676-123291781	4	3	1	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr14	30565598	30565598	A	C	ENSMUST00000022529.7	1	ENSMUSG00000021957	missense	D/A	183	Tkt	ENSMUST00000022529.7:c.548A>C	ENSMUSP00000022529.6:p.Asp183Ala	H-2-Kb	8	8	4	AIFAINRL	AIFDINRL	NetMHCpan	63.2	123.2	1.949	87	0.207	133.004	297.159	2.234	429.52	121.55	123.2	63.2	314.5864409	164.7175978	279.7306149	144.4574685	M4_p20	1.342857143	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.21	87	0	0	NA	14qB	chr14-19751082-41183403	4	3	1	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr13	104802182	104802182	A	G	ENSMUST00000022228.12	1	ENSMUSG00000021715	missense	F/L	207	Cwc27	ENSMUST00000022228.12:c.619T>C	ENSMUSP00000022228.6:p.Phe207Leu	H-2-Kb	8	4	8	KNFSLLSL	KNFSLLSF	NetMHCpan	39.6	396.9	10.023	16	0.25	125.944	1321.99	10.497	804.31	124.32	396.9	39.6	2073.671696	127.5674869	1839.670312	146.4670721	M4_p20	1.3	1.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.273	16	0	0	NA	13qD1	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr14	88468805	88468805	AT	A	ENSMUST00000061628.6	1	ENSMUSG00000050505	FS	N/X	353	Pcdh20	ENSMUST00000061628.6:c.1058del	ENSMUSP00000054774.5:p.Asn353MetfsTer48	H-2-Kb	8	48	0	VSYRHISS	NA	SMM	41.471	NA	NA	160	0.425	102.465	NA	NA	NA	135.47	NA	241.9	NA	41.47056956	NA	69.46083504	M4_p20	-0.985714286	-0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.421	160	0	0	NA	14qE1	chr14-53294676-123291781	4	3	1	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr14	66004100	66004100	T	A	ENSMUST00000059970.8	1	ENSMUSG00000034450	missense	H/L	103	Gulo	ENSMUST00000059970.8:c.308A>T	ENSMUSP00000060912.7:p.His103Leu	H-2-Kb	8	11	1	LGLALSNL	HGLALSNL	NetMHC	204.75	1235.08	6.032	93	0.269	230.187	887.134	3.854	1235.08	204.75	1375.1	217.3	539.1877292	243.0748352	512.5544401	245.8895091	M4_p20	1.214285714	1.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.271	93	0	0	NA	14qD1	chr14-53294676-123291781	4	3	1	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr14	30689749	30689749	T	C	ENSMUST00000064230.15	1	ENSMUSG00000052395	missense	L/S	418	Rft1	ENSMUST00000064230.15:c.1253T>C	ENSMUSP00000064153.7:p.Leu418Ser	H-2-Kb	8	11	1	SSYLLTSW	LSYLLTSW	SMM	154.789	389.709	2.518	215	0.353	261.666	695.416	2.658	814.41	239.71	1615.2	815	389.7086091	154.7889663	576.4212727	283.6220554	M4_p20	0.442857143	0.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.349	215	0	0	NA	14qB	chr14-19751082-41183403	4	3	1	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr13	116910900	116910900	A	G	ENSMUST00000022239.7	5	ENSMUSG00000021725	missense	L/P	251	Parp8	ENSMUST00000022239.7:c.752T>C	ENSMUSP00000022239.6:p.Leu251Pro	H-2-Kb	8	8	4	IVRPHCSL	IVRLHCSL	SMM	192.637	101.097	0.525	212	0.259	278.151	113.701	0.409	111.86	291	203	380.5	101.0974031	192.6371303	115.5420317	265.3016799	M4_p20	0.057142857	0.157142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.27	212	0	0	NA	13qD2.3	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr14	30689749	30689749	T	C	ENSMUST00000064230.15	1	ENSMUSG00000052395	missense	L/S	418	Rft1	ENSMUST00000064230.15:c.1253T>C	ENSMUSP00000064153.7:p.Leu418Ser	H-2-Kb	8	7	5	SFLVSSYL	SFLVLSYL	SMM	227.898	126.398	0.555	215	0.353	321.389	141.31	0.44	125.8	325.28	236.3	468.7	126.3979412	227.8977303	156.221211	317.4972734	M4_p20	1.671428571	1.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.349	215	0	0	NA	14qB	chr14-19751082-41183403	4	3	1	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr14	88468805	88468805	AT	A	ENSMUST00000061628.6	1	ENSMUSG00000050505	FS	N/X	353	Pcdh20	ENSMUST00000061628.6:c.1058del	ENSMUSP00000054774.5:p.Asn353MetfsTer48	H-2-Kb	8	46	0	AGVSYRHI	NA	NetMHC	332.58	NA	NA	160	0.425	442.747	NA	NA	NA	332.58	NA	361	NA	709.1530907	NA	524.4933667	M4_p20	-0.214285714	-0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.421	160	0	0	NA	14qE1	chr14-53294676-123291781	4	3	1	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr14	7818260	7818260	A	G	ENSMUST00000052678.8	5	ENSMUSG00000025278	missense	I/V	37	Flnb	ENSMUST00000052678.8:c.109A>G	ENSMUSP00000052020.8:p.Ile37Val	H-2-Kb	8	7	5	VNKRVGNL	VNKRIGNL	SMM	204.052	467.455	2.291	108	0.296	420.091	460.978	1.097	876.98	605.36	454.5	622.6	467.4552051	204.0515979	392.4099402	234.8226582	M4_p20	-1.114285714	-1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.28	108	0	0	NA	14qA1	chr14-7548571-19566630	4	3	1	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr14	30689749	30689749	T	C	ENSMUST00000064230.15	1	ENSMUSG00000052395	missense	L/S	418	Rft1	ENSMUST00000064230.15:c.1253T>C	ENSMUSP00000064153.7:p.Leu418Ser	H-2-Kb	9	6	6	SSFLVSSYL	SSFLVLSYL	NetMHC	28.11	20.29	0.722	215	0.353	83.787	68.187	0.814	20.29	28.11	28.7	29.5	107.67379	138.0733939	136.2228619	205.7074402	M4_p20	1.671428571	1.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.349	215	0	0	NA	14qB	chr14-19751082-41183403	4	3	1	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr14	29988224	29988224	G	T	ENSMUST00000224797.1	NA	ENSMUSG00000015971	missense	R/M	316	Actr8	ENSMUST00000224797.1:c.947G>T	ENSMUSP00000153076.1:p.Arg316Met	H-2-Kb	9	9	3	VSMCFYWLM	VSRCFYWLM	SMM	22.086	32.742	1.483	160	0.2	24.996	45.085	1.804	100.09	57.04	51.6	26.1	32.74236157	22.08564057	38.57003207	23.89186213	M4_p20	1.528571429	1.528571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	160	0	0	NA	14qB	chr14-19751082-41183403	4	3	1	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr14	88468805	88468805	AT	A	ENSMUST00000061628.6	1	ENSMUSG00000050505	FS	N/X	353	Pcdh20	ENSMUST00000061628.6:c.1058del	ENSMUSP00000054774.5:p.Asn353MetfsTer48	H-2-Kb	9	27	0	RIYSTWMKL	NA	NetMHC	58.49	NA	NA	160	0.425	144.513	NA	NA	NA	58.49	NA	84.8	NA	204.225515	NA	283.3022345	M4_p20	-0.271428571	-0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.421	160	0	0	NA	14qE1	chr14-53294676-123291781	4	3	1	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr13	67542395	67542395	TA	T	ENSMUST00000181892.8	1	ENSMUSG00000095432	FS	Y/X	249	Zfp748	ENSMUST00000181892.8:c.745del	ENSMUSP00000137928.1:p.Tyr249ThrfsTer47	H-2-Kb	9	44	0	VAMPFVHSI	NA	NetMHCpan	32.9	NA	NA	152	0.283	254.832	NA	NA	NA	98.41	NA	32.9	NA	411.2538721	NA	441.8247089	M4_p20	1.114285714	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.279	152	0	0	NA	13qB3	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr14	57480701	57480701	T	C	ENSMUST00000122063.7	1	ENSMUSG00000040040	missense	M/T	577	Ift88	ENSMUST00000122063.7:c.1730T>C	ENSMUSP00000113768.1:p.Met577Thr	H-2-Kb	9	5	7	QAIEWLTQL	QAIEWLMQL	NetMHC	144.21	130.29	0.903	275	0.142	232.952	219.487	0.942	130.29	144.21	188.3	221.5	250.6744092	244.4049514	289.2344371	260.7654204	M4_p20	0.5	0.5	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.151	275	0	0	NA	14qC3	chr14-53294676-123291781	4	3	1	0.9	4.924223078	RARE KARYOTYPE	1	0.826175205	sgMsh2	cell line
chr13	75878849	75878849	T	G	ENSMUST00000022078.11	1	ENSMUSG00000021589	missense	K/N	468	Rhobtb3	ENSMUST00000022078.11:c.1404A>C	ENSMUSP00000022078.5:p.Lys468Asn	H-2-Kb	9	10	2	SNETFLSFL	SKETFLSFL	NetMHC	152.36	2784.6	18.276	244	0.246	305.223	2383.314	7.808	2784.6	152.36	3434.7	227.4	1982.028979	421.8033261	1691.414308	383.0451784	M4_p20	1.171428571	1.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.242	244	0	0	NA	13qC1	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr14	30565598	30565598	A	C	ENSMUST00000022529.7	1	ENSMUSG00000021957	missense	D/A	183	Tkt	ENSMUST00000022529.7:c.548A>C	ENSMUSP00000022529.6:p.Asp183Ala	H-2-Kb	9	7	5	VAIFAINRL	VAIFDINRL	NetMHCpan	105.3	537.5	5.104	87	0.207	203.936	485.56	2.381	877.91	173.39	537.5	105.3	433.6206938	234.4822647	361.6179668	276.8534884	M4_p20	1.342857143	2.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.21	87	0	0	NA	14qB	chr14-19751082-41183403	4	3	1	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr14	56761852	56761852	A	C	ENSMUST00000022507.12	1	ENSMUSG00000021938	missense	L/V	316	Pspc1	ENSMUST00000022507.12:c.946T>G	ENSMUSP00000022507.5:p.Leu316Val	H-2-Kb	9	11	1	VMLMRQDLM	LMLMRQDLM	SMM	117.249	337.373	2.877	154	0.273	170.678	505.031	2.959	672.69	215.68	1505.6	463.1	337.3727491	117.2492302	325.2744865	125.6753201	M4_p20	-0.014285714	0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.295	154	0	0	NA	14qC3	chr14-53294676-123291781	4	3	1	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr14	34594872	34594872	T	C	ENSMUST00000022331.2	1	ENSMUSG00000021799	missense	Y/C	320	Opn4	ENSMUST00000022331.2:c.959A>G	ENSMUSP00000022331.2:p.Tyr320Cys	H-2-Kb	9	6	6	VAFAGCSHI	VAFAGYSHI	NetMHCpan	125.5	15.8	0.126	106	0.245	316.575	52.299	0.165	26.39	294.11	15.8	125.5	87.5205423	410.3080144	78.20778752	339.0392667	M4_p20	1.028571429	1.7	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	106	0	0	NA	14qB	chr14-19751082-41183403	4	3	1	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr14	29170631	29170631	A	T	ENSMUST00000022567.8	1	ENSMUSG00000021991	missense	F/Y	418	Cacna2d3	ENSMUST00000022567.8:c.1253T>A	ENSMUSP00000022567.7:p.Phe418Tyr	H-2-Kb	9	6	6	ANKGFYTQI	ANKGFFTQI	NetMHCpan	153.5	133	0.866	183	0.169	222.545	313.745	1.41	417.88	298.99	133	153.5	384.6892055	273.5961615	242.8007366	171.4944225	M4_p20	-0.357142857	-0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.179	183	0	0	NA	14qA3	chr14-19751082-41183403	4	3	1	0.9	4.924223078	RARE KARYOTYPE	1	0.979373257	sgMsh2	cell line
chr13	75878849	75878849	T	G	ENSMUST00000022078.11	1	ENSMUSG00000021589	missense	K/N	468	Rhobtb3	ENSMUST00000022078.11:c.1404A>C	ENSMUSP00000022078.5:p.Lys468Asn	H-2-Kb	9	9	3	VSNETFLSF	VSKETFLSF	SMM	343.645	425.706	1.239	244	0.246	405.045	443.114	1.094	688.38	363.15	407.4	540.2	425.7062242	343.6449768	460.5215948	446.9407979	M4_p20	0.128571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.242	244	0	0	NA	13qC1	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr14	52036009	52036009	A	G	ENSMUST00000214071.1	5	ENSMUSG00000044286	missense	M/T	34	Olfr221	ENSMUST00000214071.1:c.101T>C	ENSMUSP00000150675.1:p.Met34Thr	H-2-Kb	9	6	6	VVFLVTYAI	VVFLVMYAI	NetMHC	404.46	257.9	0.638	119	0.471	474.826	410.59	0.865	257.9	404.46	656.7	462	397.2921646	487.6519891	423.8869047	600.1364431	M4_p20	2.157142857	2.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.475	119	0	0	NA	14qC2	chr14-44505690-52852156	4	3	1	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr14	65931023	65931023	G	A	ENSMUST00000042046.4	1	ENSMUSG00000034463	missense	R/W	382	Scara3	ENSMUST00000042046.4:c.1144C>T	ENSMUSP00000046525.3:p.Arg382Trp	H-2-Kb	9	10	2	VWLSCTLGF	VRLSCTLGF	SMM	245.533	1489.738	6.067	223	0.314	454.583	2933.457	6.453	3702.95	413.43	8110.6	3413.2	1489.738357	245.5330734	2163.963843	495.735477	M4_p20	1.571428571	1.7	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.313	223	0	0	NA	14qD1	chr14-53294676-123291781	4	3	1	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr14	45614188	45614188	T	C	ENSMUST00000087320.12	1	ENSMUSG00000037697	missense	Y/C	511	Ddhd1	ENSMUST00000087320.12:c.1532A>G	ENSMUSP00000084577.5:p.Tyr511Cys	H-2-Kb	9	8	4	IMYCTSPLY	IMYYTSPLY	SMM	100.487	72.629	0.723	248	0.194	436.085	328.486	0.753	479.86	649.71	1452	1280.4	72.6289892	100.4870276	177.1128208	222.4590099	M4_p20	0.085714286	0.642857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.187	248	0	0	NA	14qC1	chr14-44505690-52852156	4	3	1	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr14	88468805	88468805	AT	A	ENSMUST00000061628.6	1	ENSMUSG00000050505	FS	N/X	353	Pcdh20	ENSMUST00000061628.6:c.1058del	ENSMUSP00000054774.5:p.Asn353MetfsTer48	H-2-Kb	9	48	0	VSYRHISSP	NA	SMM	93.78	NA	NA	160	0.425	452.652	NA	NA	NA	1165.29	NA	748.9	NA	93.77995068	NA	156.4047722	M4_p20	-1.1	-0.271428571	FALSE	FALSE	TRUE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.421	160	0	0	NA	14qE1	chr14-53294676-123291781	4	3	1	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr16	16673096	16673096	T	C	ENSMUST00000206365.2	3	ENSMUSG00000048101	missense	K/R	295	Olfr19	ENSMUST00000206365.2:c.884A>G	ENSMUSP00000145655.2:p.Lys295Arg	H-2-Db	9	6	6	YSLRNRDLM	YSLRNKDLM	NetMHC	3.3	4.46	1.352	190	0.184	5.853	8.806	1.505	4.46	3.3	5.9	4.6	11.71170164	7.105914866	14.27479894	9.496640546	M4_p20	-0.928571429	-0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.163	190	0	0	NA	16qA3	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.891831513	sgMsh2	cell line
chr15	75597834	75597834	A	G	ENSMUST00000023243.10	1	ENSMUSG00000022579	missense	T/A	133	Gpihbp1	ENSMUST00000023243.10:c.397A>G	ENSMUSP00000023243.4:p.Thr133Ala	H-2-Db	9	10	2	SALCNIPPW	STLCNIPPW	SMMPMBEC	43.709	249.787	5.715	157	0.204	85.973	425.163	4.945	1274.99	88.65	308.8	114.3	541.5268566	83.29520473	249.7870966	43.70891238	M4_p20	0.457142857	0.957142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.213	157	0	0	NA	15qD3	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr15	42523589	42523589	T	C	ENSMUST00000022921.6	1	ENSMUSG00000022309	missense	H/R	123	Angpt1	ENSMUST00000022921.6:c.368A>G	ENSMUSP00000022921.5:p.His123Arg	H-2-Db	9	6	6	NAVQNRTAT	NAVQNHTAT	NetMHC	211.33	252.71	1.196	238	0.16	408.982	668.802	1.635	252.71	211.33	1892.9	3240.7	766.6903553	457.741196	570.9130891	360.2218066	M4_p20	-0.985714286	-0.628571429	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.161	238	0	0	NA	15qB3.1	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.880888795	sgMsh2	cell line
chr16	3592590	3592590	A	G	ENSMUST00000216259.1	5	ENSMUSG00000051003	missense	S/G	65	Olfr161	ENSMUST00000216259.1:c.193A>G	ENSMUSP00000150825.1:p.Ser65Gly	H-2-Db	9	8	4	FFLGNLSFV	FFLSNLSFV	SMM	191.699	80.282	0.419	258	0.271	456.264	114.023	0.25	99.94	647.94	502	1445.2	80.28233585	191.6990674	128.1061561	264.5879126	M4_p20	1.414285714	1.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.285	258	0	0	NA	16qA1	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr16	10573360	10573360	A	G	ENSMUST00000066345.14	5	ENSMUSG00000068663	missense	N/S	222	Clec16a	ENSMUST00000066345.14:c.665A>G	ENSMUSP00000065423.7:p.Asn222Ser	H-2-Kb	8	5	7	AVPYFSSL	AVPYFSNL	NetMHC	12.73	5.65	0.444	226	0.212	68.323	30.127	0.441	5.65	12.73	13.4	21.9	46.85328006	115.0111643	50.2041941	114.746646	M4_p20	0.9	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.217	226	0	0	NA	16qA1	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr16	3592590	3592590	A	G	ENSMUST00000216259.1	5	ENSMUSG00000051003	missense	S/G	65	Olfr161	ENSMUST00000216259.1:c.193A>G	ENSMUSP00000150825.1:p.Ser65Gly	H-2-Kb	8	6	6	MYFFLGNL	MYFFLSNL	NetMHCpan	34	14.7	0.432	258	0.271	89.071	59.088	0.663	49.51	88.66	14.7	34	68.66572344	89.4828896	80.11982647	98.3422182	M4_p20	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.285	258	0	0	NA	16qA1	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr14	123515710	123515710	C	A	ENSMUST00000000201.6	5	ENSMUSG00000000197	missense	R/I	288	Nalcn	ENSMUST00000000201.6:c.863G>T	ENSMUSP00000000201.5:p.Arg288Ile	H-2-Kb	8	6	6	VFLMYIAI	VFLMYRAI	SMM	80.675	70.265	0.871	175	0.343	117.27	70.672	0.603	62.95	152.93	94.9	239.3	70.26515361	80.67519058	71.07878574	81.60936526	M4_p20	2.571428571	2.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.354	175	0	0	NA	14qE5	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr15	3325898	3325898	C	A	ENSMUST00000069451.10	1	ENSMUSG00000055737	missense	R/M	301	Ghr	ENSMUST00000069451.10:c.902G>T	ENSMUSP00000069457.4:p.Arg301Met	H-2-Kb	8	4	8	VIFSKQQM	VIFSKQQR	NetMHCpan	188.2	12750.8	67.751	212	0.311	363.498	6741.575	18.546	9458.39	228.41	12750.8	188.2	2790.872523	500.8872766	4024.76011	498.5859086	M4_p20	-0.357142857	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.296	212	0	0	NA	15qA1	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr15	100190056	100190056	T	C	ENSMUST00000100203.9	1	ENSMUSG00000023026	missense	V/A	957	Dip2b	ENSMUST00000100203.9:c.2870T>C	ENSMUSP00000097777.3:p.Val957Ala	H-2-Kb	8	7	5	ASVMAGNL	ASVMVGNL	NetMHC	249.4	155.85	0.625	252	0.155	304.177	234.725	0.772	155.85	249.4	254.3	361	261.0597994	332.4604589	215.149331	275.892567	M4_p20	1	1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.178	252	0	0	NA	15qF1	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.973901898	sgMsh2	cell line
chr15	8202293	8202293	CA	C	ENSMUST00000110617.1	5	ENSMUSG00000039801	FS	T/X	1074	Cplane1	ENSMUST00000110617.1:c.3230del	ENSMUSP00000106247.1:p.Asn1077MetfsTer30	H-2-Kb	8	20	0	ISNLQIPL	NA	SMM	97.89	NA	NA	43	0.302	211.774	NA	NA	NA	289.66	NA	467	NA	97.89037676	NA	133.88749	M4_p20	0.385714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.3023	43	0	0	NA	15qA1	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr15	76185668	76185668	G	A	ENSMUST00000073418.12	5	ENSMUSG00000022565	missense	R/W	1153	Plec	ENSMUST00000073418.12:c.3457C>T	ENSMUSP00000073124.6:p.Arg1153Trp	H-2-Kb	8	7	5	VHRLWLPL	VHRLRLPL	SMM	145.794	747.722	5.129	45	0.2	184.366	805.542	4.369	756.53	292.75	951.2	214.3	747.7217263	145.794117	854.5549615	154.4329616	M4_p20	0.171428571	0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe	3	0.242	45	0	0	NA	15qD3	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr16	3592523	3592523	GA	G	ENSMUST00000216259.1	5	ENSMUSG00000051003	FS	G/X	42	Olfr161	ENSMUST00000216259.1:c.128del	ENSMUSP00000150825.1:p.Asn43ThrfsTer46	H-2-Kb	8	47	0	LSLRYWPF	NA	NetMHCpan	130.4	NA	NA	205	0.263	210.41	NA	NA	NA	465.62	NA	130.4	NA	248.7367755	NA	172.0838049	M4_p20	-0.357142857	-0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.272	205	0	0	NA	16qA1	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr15	66016453	66016453	C	A	ENSMUST00000070256.8	1	ENSMUSG00000056258	missense	A/S	421	Kcnq3	ENSMUST00000070256.8:c.1261G>T	ENSMUSP00000063380.6:p.Ala421Ser	H-2-Kb	8	11	1	SSQKLGLL	ASQKLGLL	SMM	408.075	765.138	1.875	45	0.156	497.752	1091.148	2.192	1354.85	501.49	1887.2	1107.2	765.1384027	408.0750101	827.4466462	494.0148455	M4_p20	0.4	0.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.139	45	0	0	NA	15qD1	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.760518898	sgMsh2	cell line
chr16	32961669	32961669	A	G	ENSMUST00000135193.8	5	ENSMUSG00000022801	missense	Y/C	271	Lrch3	ENSMUST00000135193.8:c.812A>G	ENSMUSP00000130708.1:p.Tyr271Cys	H-2-Kb	8	5	7	KIHIFKCL	KIHIFKYL	SMMPMBEC	256.886	92.628	0.361	253	0.221	319.381	76.184	0.239	59.74	598.73	59.4	324.9	102.9769442	313.8629122	92.62751223	256.8857419	M4_p20	1.571428571	1.571428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.219	253	0	0	NA	16qB3	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr16	32671419	32671419	C	T	ENSMUST00000115124.8	1	ENSMUSG00000022791	missense	A/V	380	Tnk2	ENSMUST00000115124.8:c.1139C>T	ENSMUSP00000110777.1:p.Ala380Val	H-2-Kb	8	10	2	VVLRDFLL	VALRDFLL	SMMPMBEC	304.607	329.412	1.081	50	0.34	373.313	388.706	1.041	586.83	710.4	448	413.4	327.8989304	333.2268594	329.4124431	304.6070846	M4_p20	1.485714286	1.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.333	50	0	0	NA	16qB3	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr16	10573360	10573360	A	G	ENSMUST00000066345.14	5	ENSMUSG00000068663	missense	N/S	222	Clec16a	ENSMUST00000066345.14:c.665A>G	ENSMUSP00000065423.7:p.Asn222Ser	H-2-Kb	9	4	8	TAVPYFSSL	TAVPYFSNL	NetMHCpan	9.2	5.9	0.641	226	0.212	54.856	46.624	0.85	5.62	11.48	5.9	9.2	91.43448014	106.4412583	87.34740358	98.23132453	M4_p20	0.9	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.217	226	0	0	NA	16qA1	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr15	16823315	16823315	CA	C	ENSMUST00000228307.1	NA	ENSMUSG00000025370	FS	K/X	128	Cdh9	ENSMUST00000228307.1:c.383del	ENSMUSP00000154022.1:p.Lys128ArgfsTer3	H-2-Kb	9	4	8	SLYILRARL	SLYILRAKA	NetMHC	34.72	2987.65	86.05	156	0.135	138.433	2844.375	20.547	2987.65	34.72	2701.1	48.7	4386.417848	267.9847002	2662.257137	228.165512	M4_p20	0.514285714	1.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.137	156	0	0	NA	15qA2	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.74957618	sgMsh2	cell line
chr16	3592590	3592590	A	G	ENSMUST00000216259.1	5	ENSMUSG00000051003	missense	S/G	65	Olfr161	ENSMUST00000216259.1:c.193A>G	ENSMUSP00000150825.1:p.Ser65Gly	H-2-Kb	9	5	7	PMYFFLGNL	PMYFFLSNL	SMM	22.862	15.35	0.671	258	0.271	43.133	26.875	0.623	34.5	54.11	28.5	71.6	15.35005727	22.86177783	25.24933823	32.15511003	M4_p20	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.285	258	0	0	NA	16qA1	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr16	10573360	10573360	A	G	ENSMUST00000066345.14	5	ENSMUSG00000068663	missense	N/S	222	Clec16a	ENSMUST00000066345.14:c.665A>G	ENSMUSP00000065423.7:p.Asn222Ser	H-2-Kb	9	5	7	AVPYFSSLV	AVPYFSNLV	NetMHC	102.64	185.5	1.807	226	0.212	388.265	612.133	1.577	185.5	102.64	804.4	410	419.8653158	366.5303993	824.6126636	684.3054518	M4_p20	0.9	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.217	226	0	0	NA	16qA1	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr15	98126427	98126427	G	T	ENSMUST00000051226.7	1	ENSMUSG00000033065	missense	G/C	439	Pfkm	ENSMUST00000051226.7:c.1315G>T	ENSMUSP00000059801.6:p.Gly439Cys	H-2-Kb	9	7	5	VVHDCFEGL	VVHDGFEGL	NetMHC	110.43	431.59	3.908	201	0.184	228.926	428.227	1.871	431.59	110.43	423.6	235.2	439.6529586	227.0439846	424.864065	230.8075441	M4_p20	-0.214285714	0.5	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.182	201	0	0	NA	15qF1	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.995787333	sgMsh2	cell line
chr15	3325898	3325898	C	A	ENSMUST00000069451.10	1	ENSMUSG00000055737	missense	R/M	301	Ghr	ENSMUST00000069451.10:c.902G>T	ENSMUSP00000069457.4:p.Arg301Met	H-2-Kb	9	4	8	VIFSKQQMI	VIFSKQQRI	NetMHC	128.02	112.77	0.881	212	0.311	167.824	129.667	0.773	112.77	128.02	141	229.5	118.334124	147.6080354	149.021867	188.039895	M4_p20	-0.357142857	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.296	212	0	0	NA	15qA1	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr14	123515710	123515710	C	A	ENSMUST00000000201.6	5	ENSMUSG00000000197	missense	R/I	288	Nalcn	ENSMUST00000000201.6:c.863G>T	ENSMUSP00000000201.5:p.Arg288Ile	H-2-Kb	9	5	7	WVFLMYIAI	WVFLMYRAI	SMM	126.506	178.694	1.413	175	0.343	190.437	187.572	0.985	117.77	251.38	308	1796.8	178.6940122	126.5056726	196.4490803	129.4941055	M4_p20	2.571428571	2.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.354	175	0	0	NA	14qE5	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr15	76622252	76622252	GT	G	ENSMUST00000078803.4	1	ENSMUSG00000115987	FS	N/X	216	Vps28	ENSMUST00000078803.4:c.647del	ENSMUSP00000077856.3:p.Asn216ThrfsTer?	H-2-Kb	9	5	7	SAYNAFTAS	SAYNAFNRF	SMM	204.226	61.96	0.303	290	0.19	329.815	52.55	0.159	43.14	281.84	34.5	452.4	61.95979897	204.225515	87.54876014	377.7896015	M4_p20	0.014285714	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.193	290	0	0	NA	15qD3	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr15	76185668	76185668	G	A	ENSMUST00000073418.12	5	ENSMUSG00000022565	missense	R/W	1153	Plec	ENSMUST00000073418.12:c.3457C>T	ENSMUSP00000073124.6:p.Arg1153Trp	H-2-Kb	9	6	6	TVHRLWLPL	TVHRLRLPL	NetMHCpan	140.4	473.4	3.372	45	0.2	302.662	666.334	2.202	585.79	318.08	473.4	140.4	790.8789199	332.7438214	746.8785726	287.2433612	M4_p20	0.171428571	0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe	3	0.242	45	0	0	NA	15qD3	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr16	3592523	3592523	GA	G	ENSMUST00000216259.1	5	ENSMUSG00000051003	FS	G/X	42	Olfr161	ENSMUST00000216259.1:c.128del	ENSMUSP00000150825.1:p.Asn43ThrfsTer46	H-2-Kb	9	39	0	WMYASPPPL	NA	NetMHCpan	187.9	NA	NA	205	0.263	209.738	NA	NA	NA	330.1	NA	187.9	NA	192.357888	NA	227.1171867	M4_p20	-0.185714286	-0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.272	205	0	0	NA	16qA1	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr16	10573360	10573360	A	G	ENSMUST00000066345.14	5	ENSMUSG00000068663	missense	N/S	222	Clec16a	ENSMUST00000066345.14:c.665A>G	ENSMUSP00000065423.7:p.Asn222Ser	H-2-Kb	9	10	2	SSLVWFIGS	SNLVWFIGS	SMM	183.7	195.483	1.064	226	0.212	453.468	657.597	1.45	919.6	551.1	1433.2	1147.6	195.4834522	183.7003569	395.5942769	355.8360953	M4_p20	1.885714286	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.217	226	0	0	NA	16qA1	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr16	59543197	59543197	AT	A	ENSMUST00000172910.2	5	ENSMUSG00000022723	FS	K/X	2441	Crybg3	ENSMUST00000172910.2:c.7323del	ENSMUSP00000156047.1:p.Lys2441AsnfsTer11	H-2-Db	9	7	5	AAEMNHCIL	NA	NetMHCpan	226	NA	NA	64	0.438	388.867	NA	NA	NA	644.6	NA	226	NA	423.2724481	NA	354.4622582	M4_p20	0.357142857	0.357142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.403	64	0	0	NA	16qC1.3	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr17	37701005	37701005	AT	A	ENSMUST00000213732.1	5	ENSMUSG00000059964	FS	F/X	112	Olfr119	ENSMUST00000213732.1:c.339del	ENSMUSP00000150099.1:p.Phe113LeufsTer3	H-2-Kb	8	5	8	QMFFFTFL	QMFFFTFF	NetMHCpan	9.9	98.7	9.97	480	0.25	18.421	250.269	13.586	184.5	17.4	98.7	9.9	316.0385059	19.44195797	349.7357273	27.84453695	M4_p20	2.314285714	2.314285714	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.248	480	0	0	NA	17qB1	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr17	20776752	20776752	A	G	ENSMUST00000233186.1	NA	ENSMUSG00000060245	missense	M/T	168	Vmn1r228	ENSMUST00000233186.1:c.503T>C	ENSMUSP00000156690.1:p.Met168Thr	H-2-Kb	8	10	2	VTFILLNM	VMFILLNM	NetMHCpan	26.7	26.9	1.007	289	0.221	36.758	57.254	1.558	35.67	30.09	26.9	26.7	78.83879904	43.42501729	92.62751223	51.49202839	M4_p20	1.8	2.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.231	289	0	0	NA	17qA3.2	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr16	85103214	85103214	C	G	ENSMUST00000005406.11	1	ENSMUSG00000022892	missense	R/P	116	App	ENSMUST00000005406.11:c.347G>C	ENSMUSP00000005406.10:p.Arg116Pro	H-2-Kb	8	6	6	IVIPYPCL	IVIPYRCL	NetMHCpan	35.7	34	0.952	272	0.279	60.569	48.602	0.802	31.15	45.15	34	35.7	64.37837347	75.9871227	63.20333573	77.57825382	M4_p20	1.5	1.6	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.282	272	0	0	NA	16qC3.3	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr17	37382656	37382656	T	C	ENSMUST00000215518.1	5	ENSMUSG00000094884	missense	Y/H	30	Olfr105-ps	ENSMUST00000215518.1:c.88T>C	ENSMUSP00000154753.1:p.Tyr30His	H-2-Kb	8	8	4	LAMHFINV	LAMYFINV	NetMHCpan	38.2	31.6	0.827	592	0.236	115.449	106.2	0.92	39.92	67.69	31.6	38.2	226.3288934	224.7708563	172.480499	163.2074578	M4_p20	1.214285714	1.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.242	592	0	0	NA	17qB1	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr17	20776752	20776752	A	G	ENSMUST00000233186.1	NA	ENSMUSG00000060245	missense	M/T	168	Vmn1r228	ENSMUST00000233186.1:c.503T>C	ENSMUSP00000156690.1:p.Met168Thr	H-2-Kb	8	5	7	ISFYWVTF	ISFYWVMF	NetMHCpan	38.3	61.1	1.595	289	0.221	99.923	85.055	0.851	67.37	84.57	61.1	38.3	170.8991883	193.9724271	102.7401038	115.2762924	M4_p20	0.871428571	1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.231	289	0	0	NA	17qA3.2	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr16	59433483	59433483	T	C	ENSMUST00000114341.3	1	ENSMUSG00000074991	missense	F/L	188	Gabrr3	ENSMUST00000114341.3:c.562T>C	ENSMUSP00000109980.2:p.Phe188Leu	H-2-Kb	8	4	8	CFMDFSRL	CFMDFSRF	SMM	95.662	1555.034	16.255	277	0.213	105.671	1180.519	11.172	833.65	96.86	923.1	117.7	1555.034397	95.66211974	1437.937467	114.482736	M4_p20	0.357142857	0.357142857	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.234	277	0	0	NA	16qC1.3	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr16	90767027	90767027	CA	C	ENSMUST00000140920.1	5	ENSMUSG00000039929	FS	L/X	1616	Urb1	ENSMUST00000140920.1:c.4847del	ENSMUSP00000114717.1:p.Leu1616ArgfsTer37	H-2-Kb	8	35	0	MTPAFFSI	NA	NetMHCpan	58.1	NA	NA	77	0.156	155.093	NA	NA	NA	108.47	NA	58.1	NA	201.7158386	NA	223.738128	M4_p20	1.257142857	1.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.186	77	0	0	NA	16qC3.3	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr16	58926453	58926453	T	C	ENSMUST00000205986.3	2	ENSMUSG00000090951	missense	I/M	39	Olfr181	ENSMUST00000205986.3:c.117A>G	ENSMUSP00000145877.2:p.Ile39Met	H-2-Kb	8	5	7	AIYLVTMV	AIYLVTIV	NetMHC	143.87	786.44	5.466	513	0.207	259.507	804.095	3.099	786.44	143.87	1131.3	680.2	620.4974485	238.6382195	821.7505435	280.3754606	M4_p20	2.371428571	2.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.198	513	0	0	NA	16qC1.3	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr17	20776752	20776752	A	G	ENSMUST00000233186.1	NA	ENSMUSG00000060245	missense	M/T	168	Vmn1r228	ENSMUST00000233186.1:c.503T>C	ENSMUSP00000156690.1:p.Met168Thr	H-2-Kb	8	8	4	YWVTFILL	YWVMFILL	NetMHC	352.28	334.42	0.949	289	0.221	421.685	452.313	1.073	334.42	352.28	1590.9	802.3	518.4895408	446.4162552	386.1357391	396.9538331	M4_p20	2.5	2.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.231	289	0	0	NA	17qA3.2	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr17	20776752	20776752	A	G	ENSMUST00000233186.1	NA	ENSMUSG00000060245	missense	M/T	168	Vmn1r228	ENSMUST00000233186.1:c.503T>C	ENSMUSP00000156690.1:p.Met168Thr	H-2-Kb	8	6	6	SFYWVTFI	SFYWVMFI	SMM	292.914	228.95	0.782	289	0.221	414.166	342.619	0.827	314.78	409.79	1069.4	634.6	228.9496585	292.9139126	370.458872	418.5429201	M4_p20	1.628571429	1.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.231	289	0	0	NA	17qA3.2	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr16	58915901	58915901	GA	G	ENSMUST00000171656.2	2	ENSMUSG00000090629	FS	S/X	247	Olfr180	ENSMUST00000171656.2:c.739del	ENSMUSP00000128358.1:p.Ser247LeufsTer31	H-2-Kb	8	31	0	KTYQWLYF	NA	NetMHCpan	200.7	NA	NA	219	0.283	382.912	NA	NA	NA	489.31	NA	200.7	NA	445.3895263	NA	320.4350395	M4_p20	-0.157142857	-0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.297	219	0	0	NA	16qC1.2	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr16	58915901	58915901	GA	G	ENSMUST00000171656.2	2	ENSMUSG00000090629	FS	S/X	247	Olfr180	ENSMUST00000171656.2:c.739del	ENSMUSP00000128358.1:p.Ser247LeufsTer31	H-2-Kb	8	29	0	VIKTYQWL	NA	SMM	154.433	NA	NA	219	0.283	282.366	NA	NA	NA	556.53	NA	386.6	NA	154.4329616	NA	178.1312026	M4_p20	-0.285714286	-0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.297	219	0	0	NA	16qC1.2	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr17	30761096	30761096	GT	G	ENSMUST00000236140.1	NA	ENSMUSG00000033826	FS	F/X	3035	Dnah8	ENSMUST00000236140.1:c.9108del	ENSMUSP00000157469.1:p.Phe3036LeufsTer5	H-2-Kb	8	5	8	TSLDLVFL	TSLDLVFF	SMM	245.89	3997.054	16.255	152	0.184	452.067	3837.777	8.489	5159.69	706.65	3678.5	633.9	3997.053856	245.8895091	3394.220093	270.2340064	M4_p20	2.014285714	2.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.184	152	0	0	NA	17qA3.3	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr16	66815326	66815326	G	A	ENSMUST00000120594.7	5	ENSMUSG00000064115	missense	A/V	116	Cadm2	ENSMUST00000120594.7:c.347C>T	ENSMUSP00000113500.1:p.Ala116Val	H-2-Kb	8	8	4	TSKVYLTV	TSKAYLTV	NetMHCpan	375.6	539.3	1.436	309	0.188	489.686	543.624	1.11	1475.07	1077.08	539.3	375.6	547.948825	525.7024488	534.2444264	453.6699358	M4_p20	0.785714286	0.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.194	309	0	0	NA	16qC1.3	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr17	37701005	37701005	AT	A	ENSMUST00000213732.1	5	ENSMUSG00000059964	FS	F/X	112	Olfr119	ENSMUST00000213732.1:c.339del	ENSMUSP00000150099.1:p.Phe113LeufsTer3	H-2-Kb	9	4	9	TQMFFFTFL	TQMFFFTFF	NetMHCpan	14.3	117.3	8.203	480	0.25	93.963	252.605	2.688	250.38	40.61	117.3	14.3	271.7127388	161.1053638	254.8296748	147.3160278	M4_p20	2.314285714	2.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.248	480	0	0	NA	17qB1	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr17	20776752	20776752	A	G	ENSMUST00000233186.1	NA	ENSMUSG00000060245	missense	M/T	168	Vmn1r228	ENSMUST00000233186.1:c.503T>C	ENSMUSP00000156690.1:p.Met168Thr	H-2-Kb	9	10	2	VTFILLNML	VMFILLNML	NetMHC	42.94	37.22	0.867	289	0.221	66.306	34.651	0.523	37.22	42.94	76.9	61.8	26.67534224	70.81251187	32.08115533	72.81988689	M4_p20	2.442857143	2.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.231	289	0	0	NA	17qA3.2	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr17	20776752	20776752	A	G	ENSMUST00000233186.1	NA	ENSMUSG00000060245	missense	M/T	168	Vmn1r228	ENSMUST00000233186.1:c.503T>C	ENSMUSP00000156690.1:p.Met168Thr	H-2-Kb	9	5	7	ISFYWVTFI	ISFYWVMFI	NetMHCpan	30.8	52.7	1.711	289	0.221	101.373	114.5	1.129	43.55	43.8	52.7	30.8	199.5767748	194.5852873	176.2990613	158.9461453	M4_p20	1.628571429	1.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.231	289	0	0	NA	17qA3.2	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr17	20994614	20994614	T	C	ENSMUST00000237195.1	NA	ENSMUSG00000045575	missense	I/V	25	Vmn1r233	ENSMUST00000237195.1:c.73A>G	ENSMUSP00000158452.1:p.Ile25Val	H-2-Kb	9	3	9	VIILFQTMV	VIILFQTMI	NetMHC	46.04	63.11	1.371	277	0.227	142.11	130.172	0.916	63.11	46.04	89.3	129.3	171.044849	154.920896	194.6480243	188.4733717	M4_p20	1.857142857	2.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.231	277	0	0	NA	17qA3.2	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr17	13225949	13225949	T	C	ENSMUST00000080647.4	1	ENSMUSG00000073458	missense	C/R	138	Smok2a	ENSMUST00000080647.4:c.412T>C	ENSMUSP00000094432.2:p.Cys138Arg	H-2-Kb	9	8	4	INYRHNQGI	INYCHNQGI	NetMHCpan	30	54.9	1.83	805	0.159	105.887	125.761	1.188	188.04	80.78	54.9	30	133.6934098	144.9138851	117.8284053	130.9935766	M4_p20	-1.7	-1.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.157	805	0	0	NA	17qA1	chr17-3079405-14988397	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.859003359	sgMsh2	cell line
chr17	37623831	37623831	G	A	ENSMUST00000216128.1	5	ENSMUSG00000061336	missense	T/I	268	Olfr116	ENSMUST00000216128.1:c.803C>T	ENSMUSP00000150977.1:p.Thr268Ile	H-2-Kb	9	11	1	IALEFLFSI	TALEFLFSI	NetMHCpan	56	110.4	1.971	299	0.271	141.133	246.714	1.748	180.02	99.41	110.4	56	313.4079437	182.8563304	348.5378918	210.4989821	M4_p20	1.914285714	2.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.266	299	0	0	NA	17qB1	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr17	32774731	32774731	T	C	ENSMUST00000159086.9	1	ENSMUSG00000024298	missense	K/R	490	Zfp871	ENSMUST00000159086.9:c.1469A>G	ENSMUSP00000127178.1:p.Lys490Arg	H-2-Kb	9	7	5	SQFQRHKAL	SQFQKHKAL	NetMHC	137.22	270.99	1.975	179	0.24	206.635	341.188	1.651	270.99	137.22	269.6	151.3	460.3731641	307.6876041	411.386466	261.9690589	M4_p20	-0.957142857	-0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.258	179	0	0	NA	17qB1	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr17	37701005	37701005	AT	A	ENSMUST00000213732.1	5	ENSMUSG00000059964	FS	F/X	112	Olfr119	ENSMUST00000213732.1:c.339del	ENSMUSP00000150099.1:p.Phe113LeufsTer3	H-2-Kb	9	5	8	QMFFFTFLV	QMFFFTFFG	SMM	56.378	416.016	7.379	480	0.25	130.663	1702.349	13.029	3181.25	152.62	2823.6	205	416.0159675	56.37804345	581.0988286	108.7051201	M4_p20	2.642857143	2.642857143	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.248	480	0	0	NA	17qB1	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr17	37382656	37382656	T	C	ENSMUST00000215518.1	5	ENSMUSG00000094884	missense	Y/H	30	Olfr105-ps	ENSMUST00000215518.1:c.88T>C	ENSMUSP00000154753.1:p.Tyr30His	H-2-Kb	9	7	5	VLAMHFINV	VLAMYFINV	NetMHCpan	171.6	152.5	0.889	592	0.236	293.012	230.854	0.788	138.03	197.65	152.5	171.6	338.9299909	422.7756832	309.2074862	388.3738676	M4_p20	1.214285714	2.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.242	592	0	0	NA	17qB1	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr16	59433483	59433483	T	C	ENSMUST00000114341.3	1	ENSMUSG00000074991	missense	F/L	188	Gabrr3	ENSMUST00000114341.3:c.562T>C	ENSMUSP00000109980.2:p.Phe188Leu	H-2-Kb	9	3	9	MCFMDFSRL	MCFMDFSRF	NetMHCpan	90	358	3.978	277	0.213	207.731	501.909	2.416	714.8	209.28	358	90	645.8177839	382.9217191	356.6563823	206.1816449	M4_p20	0.357142857	1.085714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.234	277	0	0	NA	16qC1.3	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr17	19053653	19053653	C	A	ENSMUST00000170424.2	5	ENSMUSG00000096717	missense	S/Y	54	Vmn2r98	ENSMUST00000170424.2:c.161C>A	ENSMUSP00000131261.1:p.Ser54Tyr	H-2-Kb	9	7	5	HTFYYLKKM	HTFYSLKKM	NetMHCpan	162.4	2676.5	16.481	258	0.213	315.655	1812.209	5.741	2171.47	303.78	2676.5	162.4	1432.550696	345.2311699	1452.947761	327.5291816	M4_p20	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.217	258	0	0	NA	17qA3.2	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr16	58915901	58915901	GA	G	ENSMUST00000171656.2	2	ENSMUSG00000090629	FS	S/X	247	Olfr180	ENSMUST00000171656.2:c.739del	ENSMUSP00000128358.1:p.Ser247LeufsTer31	H-2-Kb	9	31	0	KTYQWLYFI	NA	NetMHCpan	171.2	NA	NA	219	0.283	384.332	NA	NA	NA	307.23	NA	171.2	NA	461.4344339	NA	521.4948213	M4_p20	0.585714286	0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.297	219	0	0	NA	16qC1.2	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr17	20041610	20041610	C	A	ENSMUST00000168050.2	5	ENSMUSG00000090315	missense	Q/H	419	Vmn2r104	ENSMUST00000168050.2:c.1257G>T	ENSMUSP00000129895.1:p.Gln419His	H-2-Kb	9	7	5	QMRLHLLQM	QMRLQLLQM	SMM	159.261	464.633	2.917	360	0.172	313.845	962.138	3.066	1191.03	405.23	3505.1	1286.1	464.6329446	159.261206	733.2465023	222.4590099	M4_p20	0.3	0.3	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.165	360	0	0	NA	17qA3.2	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.902774231	sgMsh2	cell line
chr16	43898221	43898221	C	A	ENSMUST00000132859.7	5	ENSMUSG00000022701	missense	S/Y	4	Ccdc191	ENSMUST00000132859.7:c.11C>A	ENSMUSP00000116078.1:p.Ser4Tyr	H-2-Kb	9	2	3	MTYMKKELV	MTSMKKELV	NetMHC	416.43	10480.62	25.168	454	0.264	433.746	8552.231	19.717	10480.62	416.43	14641.3	616.9	6623.84254	440.6664633	5600.799166	426.8251484	M4_p20	-0.385714286	-0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.272	454	0	0	NA	16qB4	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr16	66815326	66815326	G	A	ENSMUST00000120594.7	5	ENSMUSG00000064115	missense	A/V	116	Cadm2	ENSMUST00000120594.7:c.347C>T	ENSMUSP00000113500.1:p.Ala116Val	H-2-Kb	9	8	4	TSKVYLTVL	TSKAYLTVL	NetMHCpan	234	314.2	1.343	309	0.188	318.261	475.568	1.494	710.87	472.75	314.2	234	590.3505878	373.3447082	360.7862685	263.1782532	M4_p20	1.442857143	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.194	309	0	0	NA	16qC1.3	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr17	20776752	20776752	A	G	ENSMUST00000233186.1	NA	ENSMUSG00000060245	missense	M/T	168	Vmn1r228	ENSMUST00000233186.1:c.503T>C	ENSMUSP00000156690.1:p.Met168Thr	H-2-Kb	9	7	5	FYWVTFILL	FYWVMFILL	SMM	221.876	116.174	0.524	289	0.221	423.65	331.926	0.783	511.71	508.26	3096.3	2126.9	116.1742828	221.8758325	152.1423079	339.0392667	M4_p20	2.5	2.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.231	289	0	0	NA	17qA3.2	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr16	58926453	58926453	T	C	ENSMUST00000205986.3	2	ENSMUSG00000090951	missense	I/M	39	Olfr181	ENSMUST00000205986.3:c.117A>G	ENSMUSP00000145877.2:p.Ile39Met	H-2-Kb	9	3	9	FSAIYLVTM	FSAIYLVTI	SMM	339.711	641.372	1.888	513	0.207	388.31	695.236	1.79	910.5	521.58	749.1	436.8	641.3720055	339.7113053	579.7623384	339.8208329	M4_p20	2.028571429	2.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.198	513	0	0	NA	16qC1.3	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr17	20776752	20776752	A	G	ENSMUST00000233186.1	NA	ENSMUSG00000060245	missense	M/T	168	Vmn1r228	ENSMUST00000233186.1:c.503T>C	ENSMUSP00000156690.1:p.Met168Thr	H-2-Kb	10	5	7	ISFYWVTFIL	ISFYWVMFIL	NetMHCpan	91.7	145	1.581	289	0.221	444.919	421.504	0.947	138.17	143.63	145	91.7	1089.757835	1217.110475	698.0073568	746.2081705	M4_p20	1.771428571	1.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.231	289	0	0	NA	17qA3.2	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr17	56632320	56632320	T	G	ENSMUST00000112979.3	1	ENSMUSG00000040828	missense	F/V	50	Catsperd	ENSMUST00000112979.3:c.148T>G	ENSMUSP00000108603.2:p.Phe50Val	H-2-Db	9	5	7	YAFPNTVVL	YAFPNTFVL	NetMHCpan	9.1	7.6	0.835	228	0.224	33.615	30.922	0.92	12.57	10.27	7.6	9.1	49.27424743	62.03260224	49.83907806	56.96000254	M4_p20	1.314285714	1.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.246	228	0	0	NA	17qD	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr18	37680939	37680939	G	T	ENSMUST00000192931.1	1	ENSMUSG00000103037	missense	S/I	161	Pcdhgb1	ENSMUST00000192931.1:c.482G>T	ENSMUSP00000141348.1:p.Ser161Ile	H-2-Db	9	3	9	NSLKMYTVI	NSLKMYTVS	NetMHC	158.89	19903.22	125.264	228	0.461	356.594	9153.28	25.669	19903.22	158.89	14990.9	524.3	2996.539453	391.3992598	3315.660076	321.7881152	M4_p20	1.214285714	1.214285714	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.483	228	0	0	NA	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr18	37021442	37021442	T	C	ENSMUST00000047614.3	1	ENSMUSG00000103310	missense	Y/H	405	Pcdha12	ENSMUST00000047614.3:c.1213T>C	ENSMUSP00000047609.1:p.Tyr405His	H-2-Db	9	5	7	STFKNYHSL	STFKNYYSL	NetMHCpan	36.5	34.8	0.953	244	0.213	221.131	155.833	0.705	81.22	180.1	34.8	36.5	270.7821299	272.659102	230.4464382	262.162156	M4_p20	-0.871428571	-0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.231	244	0	0	NA	18qB2	chr18-5046666-88869177	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr17	84697532	84697532	T	C	ENSMUST00000045714.14	1	ENSMUSG00000024254	missense	F/L	576	Abcg8	ENSMUST00000045714.14:c.1726T>C	ENSMUSP00000035246.8:p.Phe576Leu	H-2-Db	9	10	2	GLMINLDNL	GFMINLDNL	NetMHCpan	367.1	1384.4	3.771	110	0.273	482.343	875.659	1.815	1955.18	698.93	1384.4	367.1	313.0545354	536.5621085	366.91883	428.1244195	M4_p20	0.5	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.278	110	0	0	NA	17qE4	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr17	84697532	84697532	T	C	ENSMUST00000045714.14	1	ENSMUSG00000024254	missense	F/L	576	Abcg8	ENSMUST00000045714.14:c.1726T>C	ENSMUSP00000035246.8:p.Phe576Leu	H-2-Kb	8	4	8	SFYLTAGL	SFYLTAGF	NetMHC	15.37	172.25	11.207	110	0.273	31.057	352.868	11.362	172.25	15.37	298.6	61	482.7696948	29.69887511	407.1364636	32.41455024	M4_p20	1.4	1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.278	110	0	0	NA	17qE4	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr18	61697778	61697778	T	C	ENSMUST00000025472.6	1	ENSMUSG00000024579	missense	Y/C	341	Pcyox1l	ENSMUST00000025472.6:c.1022A>G	ENSMUSP00000025472.1:p.Tyr341Cys	H-2-Kb	8	5	7	VSLVHGCL	VSLVHGYL	NetMHC	42.26	7.17	0.17	96	0.24	48.333	15.42	0.319	7.17	42.26	15	81.6	15.83944645	48.27696948	17.44777291	48.38825938	M4_p20	1.414285714	1.471428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.279	96	0	0	NA	18qE1	chr18-5046666-88869177	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr18	46850250	46850250	C	G	ENSMUST00000025358.3	5	ENSMUSG00000024481	missense	A/G	20	Lvrn	ENSMUST00000025358.3:c.59C>G	ENSMUSP00000025358.2:p.Ala20Gly	H-2-Kb	8	6	6	VALLLGAL	VALLLAAL	NetMHC	47.17	11.1	0.235	18	0.167	78.463	28.116	0.358	11.1	47.17	28	73.8	28.23189304	83.12659663	32.86548155	95.8826437	M4_p20	2.628571429	2.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.231	18	0	0	NA	18qC	chr18-5046666-88869177	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr18	54898451	54898451	A	G	ENSMUST00000064763.6	1	ENSMUSG00000052713	missense	S/P	806	Zfp608	ENSMUST00000064763.6:c.2416T>C	ENSMUSP00000068192.5:p.Ser806Pro	H-2-Kb	8	5	7	VNPALVPL	VNPALVSL	NetMHC	52.43	181.85	3.468	90	0.211	107.275	217.777	2.03	181.85	52.43	215.9	108.2	219.6544469	106.3506136	302.5101842	144.4574685	M4_p20	0.985714286	1.042857143	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.258	90	0	0	NA	18qD3	chr18-5046666-88869177	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr17	46323357	46323357	T	C	ENSMUST00000047970.13	1	ENSMUSG00000032842	missense	T/A	536	Abcc10	ENSMUST00000047970.13:c.1606A>G	ENSMUSP00000038041.7:p.Thr536Ala	H-2-Kb	8	10	2	AAKVFTAL	ATKVFTAL	NetMHCpan	105	90.2	0.859	67	0.224	135.621	106.479	0.785	110.69	109.53	90.2	105	117.6901185	181.861178	102.2680559	161.7111628	M4_p20	1.4	1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.285	67	0	0	NA	17qC	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr17	56777470	56777470	T	C	ENSMUST00000002444.14	1	ENSMUSG00000024206	missense	N/S	668	Rfx2	ENSMUST00000002444.14:c.2003A>G	ENSMUSP00000002444.7:p.Asn668Ser	H-2-Kb	8	6	6	VMGEFSDL	VMGEFNDL	NetMHC	113.49	324.64	2.861	115	0.278	192.202	326.647	1.699	324.64	113.49	576.2	261.7	313.8629122	193.9724271	328.6548155	190.4320313	M4_p20	0.042857143	0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.277	115	0	0	NA	17qD	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr18	56491908	56491908	A	C	ENSMUST00000237355.1	NA	ENSMUSG00000001700	missense	I/L	358	Gramd3	ENSMUST00000237355.1:c.1072A>C	ENSMUSP00000157710.1:p.Ile358Leu	H-2-Kb	8	4	8	AIIVCALL	AIIVCALI	NetMHC	138.87	1449.26	10.436	125	0.256	182.51	1386.404	7.596	1449.26	138.87	2402.7	511.3	1323.548926	204.0515979	924.1447486	160.9681675	M4_p20	3.585714286	3.585714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.253	125	0	0	NA	18qD3	chr18-5046666-88869177	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr17	42592968	42592968	TA	T	ENSMUST00000068355.7	1	ENSMUSG00000043972	FS	Y/X	159	Opn5	ENSMUST00000068355.7:c.475del	ENSMUSP00000063542.6:p.Tyr159MetfsTer43	H-2-Kb	8	5	7	LAVIWAML	LAVIWAYA	NetMHCpan	147.2	3567.3	24.234	45	0.222	206.513	4062.47	19.672	6717.72	182.49	3567.3	147.2	4557.639811	321.1737185	2604.593785	230.5366617	M4_p20	2.442857143	2.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.234	45	0	0	NA	17qB3	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr17	40228805	40228805	A	G	ENSMUST00000026499.5	1	ENSMUSG00000025433	missense	V/A	167	Crisp3	ENSMUST00000026499.5:c.500T>C	ENSMUSP00000026499.5:p.Val167Ala	H-2-Kb	8	10	2	YACRYCPV	YVCRYCPV	SMMPMBEC	174.478	161.339	0.925	684	0.294	239.579	312.449	1.304	429.13	286.52	494.4	303	195.7672319	192.6371303	161.3392375	174.4777291	M4_p20	0.514285714	0.514285714	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.298	684	0	0	NA	17qB2	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr17	83477824	83477824	T	C	ENSMUST00000096766.11	1	ENSMUSG00000032624	missense	L/P	875	Eml4	ENSMUST00000096766.11:c.2624T>C	ENSMUSP00000094528.4:p.Leu875Pro	H-2-Kb	8	5	7	SIIQWKPV	SIIQWKLV	SMMPMBEC	267.141	735.766	2.754	178	0.343	337.819	1037.14	3.07	1227.56	355.94	1662.3	657.1	846.7203545	319.6980594	735.7664827	267.1406633	M4_p20	0.471428571	0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.333	178	0	0	NA	17qE4	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr17	38304994	38304994	T	C	ENSMUST00000213505.1	5	ENSMUSG00000054940	missense	T/A	156	Olfr137	ENSMUST00000213505.1:c.466A>G	ENSMUSP00000150173.1:p.Thr156Ala	H-2-Kb	8	7	5	CGFTASAL	CGFTTSAL	SMM	193.972	284.931	1.469	241	0.278	240.585	312.177	1.298	583.32	395.88	277.8	199.5	284.9311953	193.9724271	339.4220093	281.6696149	M4_p20	1.185714286	1.185714286	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.292	241	0	0	NA	17qB1	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr18	37941753	37941753	A	G	ENSMUST00000043498.8	1	ENSMUSG00000024454	missense	S/P	312	Hdac3	ENSMUST00000043498.8:c.934T>C	ENSMUSP00000037981.7:p.Ser312Pro	H-2-Kb	8	6	6	WTYETPLL	WTYETSLL	SMMPMBEC	359.534	238.638	0.664	343	0.268	430.684	272.762	0.633	289.23	493.46	348.5	494.9	256.2949211	367.908651	238.6382195	359.5340277	M4_p20	-0.028571429	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.27	343	0	0	NA	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr17	37751964	37751964	A	G	ENSMUST00000174675.3	5	ENSMUSG00000060017	missense	I/V	37	Olfr121	ENSMUST00000174675.3:c.109A>G	ENSMUSP00000133865.3:p.Ile37Val	H-2-Kb	8	4	8	CFLLFTLV	CFLLFTLI	SMM	253.945	461.041	1.816	754	0.293	479.578	724.227	1.51	850.4	581.81	2002	2533.9	461.0414792	253.9451951	598.0534499	377.3462166	M4_p20	2.928571429	2.928571429	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.293	754	0	0	NA	17qB1	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr17	50736151	50736151	GC	G	ENSMUST00000024717.9	1	ENSMUSG00000023923	FS	A/X	748	Tbc1d5	ENSMUST00000024717.9:c.2242del	ENSMUSP00000024717.8:p.Ala748ProfsTer33	H-2-Kb	8	19	0	FSPSEAHL	NA	SMMPMBEC	282.319	NA	NA	28	0.25	480.503	NA	NA	NA	596.47	NA	1612.2	NA	364.5356443	NA	282.3189304	M4_p20	-0.614285714	-0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.264	28	0	0	NA	17qC	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr18	37021442	37021442	T	C	ENSMUST00000047614.3	1	ENSMUSG00000103310	missense	Y/H	405	Pcdha12	ENSMUST00000047614.3:c.1213T>C	ENSMUSP00000047609.1:p.Tyr405His	H-2-Kb	8	8	4	KNYHSLVL	KNYYSLVL	NetMHCpan	150	57	0.38	244	0.213	428.416	356.888	0.833	345.02	673.56	57	150	368.7567681	366.2182643	518.4895408	490.6140712	M4_p20	0.428571429	0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.231	244	0	0	NA	18qB2	chr18-5046666-88869177	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr18	37356949	37356949	T	C	ENSMUST00000051163.2	NA	ENSMUSG00000045876	missense	V/A	560	Pcdhb8	ENSMUST00000051163.2:c.1679T>C	ENSMUSP00000054371.1:p.Val560Ala	H-2-Kb	8	8	4	APFALYPL	APFVLYPL	SMM	112.393	107.83	0.959	139	0.532	384.18	349.776	0.91	637.96	873.63	586.9	635.7	107.830098	112.3931906	112.6522836	132.6600022	M4_p20	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.52	139	0	0	NA	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr18	37473936	37473936	T	C	ENSMUST00000050034.2	NA	ENSMUSG00000047033	missense	F/L	74	Pcdhb15	ENSMUST00000050034.2:c.220T>C	ENSMUSP00000059598.1:p.Phe74Leu	H-2-Kb	8	10	2	RLLLLSPL	RFLLLSPL	SMMPMBEC	429.279	192.637	0.449	82	0.317	459.126	249.124	0.543	305.61	971.72	348.4	437.7	163.5836898	480.5515695	192.6371303	429.2793522	M4_p20	2.371428571	2.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.293	82	0	0	NA	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr18	37021442	37021442	T	C	ENSMUST00000047614.3	1	ENSMUSG00000103310	missense	Y/H	405	Pcdha12	ENSMUST00000047614.3:c.1213T>C	ENSMUSP00000047609.1:p.Tyr405His	H-2-Kb	8	6	6	TFKNYHSL	TFKNYYSL	SMM	267.756	194.42	0.726	244	0.213	366.723	239.62	0.653	359	1171.72	262.6	447.2	194.4195797	267.7564861	216.6406749	286.246378	M4_p20	-0.871428571	-0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.231	244	0	0	NA	18qB2	chr18-5046666-88869177	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr18	37021442	37021442	T	C	ENSMUST00000047614.3	1	ENSMUSG00000103310	missense	Y/H	405	Pcdha12	ENSMUST00000047614.3:c.1213T>C	ENSMUSP00000047609.1:p.Tyr405His	H-2-Kb	9	5	7	STFKNYHSL	STFKNYYSL	NetMHCpan	15.4	13.9	0.903	244	0.213	61.313	45.651	0.745	16.12	22.6	13.9	15.4	75.18132925	100.0253316	87.34740358	104.5321782	M4_p20	-0.871428571	-0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.231	244	0	0	NA	18qB2	chr18-5046666-88869177	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr17	84697532	84697532	T	C	ENSMUST00000045714.14	1	ENSMUSG00000024254	missense	F/L	576	Abcg8	ENSMUST00000045714.14:c.1726T>C	ENSMUSP00000035246.8:p.Phe576Leu	H-2-Kb	9	3	9	NSFYLTAGL	NSFYLTAGF	NetMHC	85.47	432.59	5.061	110	0.273	225.767	521.843	2.311	432.59	85.47	325	89.2	611.0967866	362.3347605	709.9863514	410.4403034	M4_p20	1.4	1.4	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.278	110	0	0	NA	17qE4	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr17	37751964	37751964	A	G	ENSMUST00000174675.3	5	ENSMUSG00000060017	missense	I/V	37	Olfr121	ENSMUST00000174675.3:c.109A>G	ENSMUSP00000133865.3:p.Ile37Val	H-2-Kb	9	11	1	VLLMFLVSL	ILLMFLVSL	NetMHC	127.87	166.59	1.303	754	0.293	185.568	235.147	1.267	166.59	127.87	243.7	206.3	294.5167504	200.0368468	226.5948317	171.0999962	M4_p20	2.785714286	3.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.293	754	0	0	NA	17qB1	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr17	84697532	84697532	T	C	ENSMUST00000045714.14	1	ENSMUSG00000024254	missense	F/L	576	Abcg8	ENSMUST00000045714.14:c.1726T>C	ENSMUSP00000035246.8:p.Phe576Leu	H-2-Kb	9	4	8	SFYLTAGLM	SFYLTAGFM	NetMHC	185.37	344.02	1.856	110	0.273	368.163	542.485	1.473	344.02	185.37	582.5	462.1	502.4698412	274.2268658	867.4610828	521.4948213	M4_p20	1.271428571	1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.278	110	0	0	NA	17qE4	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr18	37680939	37680939	G	T	ENSMUST00000192931.1	1	ENSMUSG00000103037	missense	S/I	161	Pcdhgb1	ENSMUST00000192931.1:c.482G>T	ENSMUSP00000141348.1:p.Ser161Ile	H-2-Kb	9	10	2	VIPNPHFSL	VSPNPHFSL	NetMHC	211.65	119.37	0.564	228	0.461	410.119	267.215	0.652	119.37	211.65	107.8	235.3	415.0591573	584.9382211	522.696991	774.9077422	M4_p20	-0.585714286	0.228571429	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.483	228	0	0	NA	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr17	56632320	56632320	T	G	ENSMUST00000112979.3	1	ENSMUSG00000040828	missense	F/V	50	Catsperd	ENSMUST00000112979.3:c.148T>G	ENSMUSP00000108603.2:p.Phe50Val	H-2-Kb	9	3	9	LFYAFPNTV	LFYAFPNTF	NetMHCpan	233	338.6	1.453	228	0.224	281.738	333.442	1.184	338.69	258.61	338.6	233	228.6177783	304.8667072	328.2842143	424.864065	M4_p20	0.242857143	0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.246	228	0	0	NA	17qD	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr18	25340381	25340381	A	G	ENSMUST00000097643.9	5	ENSMUSG00000033632	missense	N/S	414	AW554918	ENSMUST00000097643.9:c.1241A>G	ENSMUSP00000095248.3:p.Asn414Ser	H-2-Kb	9	10	2	YSWLRTQAM	YNWLRTQAM	NetMHCpan	246.9	389.9	1.579	61	0.344	285.227	354.619	1.243	397.05	289.33	389.9	246.9	301.3769268	283.2109234	319.3375581	287.2433612	M4_p20	-0.3	-0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.325	61	0	0	NA	18qA2	chr18-5046666-88869177	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr18	37941753	37941753	A	G	ENSMUST00000043498.8	1	ENSMUSG00000024454	missense	S/P	312	Hdac3	ENSMUST00000043498.8:c.934T>C	ENSMUSP00000037981.7:p.Ser312Pro	H-2-Kb	9	4	8	RCWTYETPL	RCWTYETSL	SMMPMBEC	408.555	698.634	1.71	343	0.268	457.95	789.442	1.724	880.25	477.4	638	438.5	1244.829868	714.6773197	698.6344547	408.5545015	M4_p20	-0.7	-0.7	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.27	343	0	0	NA	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Db	9	5	9	SNVVNHFFV	SNVVNHFFC	NetMHC	33.28	4264.52	128.141	301	0.199	169.809	3110.826	18.32	4264.52	33.28	4326.5	48.8	1957.131469	290.8171406	1310.901318	321.7881152	M4_p20	1.642857143	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.19	301	0	0	NA	19qA	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr19	18690332	18690332	GT	G	ENSMUST00000025632.10	1	ENSMUSG00000024726	FS	S/X	222	Carnmt1	ENSMUST00000025632.10:c.672del	ENSMUSP00000025632.9:p.Phe224LeufsTer59	H-2-Db	9	26	0	LKLTNINFI	NA	NetMHC	171.17	NA	NA	95	0.211	488.032	NA	NA	NA	171.17	NA	510.8	NA	507.7150065	NA	468.3494343	M4_p20	1.128571429	1.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.202	95	0	0	NA	19qB	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr19	18690332	18690332	GT	G	ENSMUST00000025632.10	1	ENSMUSG00000024726	FS	S/X	222	Carnmt1	ENSMUST00000025632.10:c.672del	ENSMUSP00000025632.9:p.Phe224LeufsTer59	H-2-Db	9	54	0	FSLMLTPTV	NA	NetMHC	216.81	NA	NA	95	0.211	301.628	NA	NA	NA	216.81	NA	469.2	NA	270.1593483	NA	333.0964468	M4_p20	1.528571429	1.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.202	95	0	0	NA	19qB	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr19	38043240	38043240	TA	T	ENSMUST00000041475.15	2	ENSMUSG00000048612	FS	F/X	28	Myof	ENSMUST00000041475.15:c.84del	ENSMUSP00000045036.8:p.Phe28LeufsTer27	H-2-Kb	8	28	0	SGMRFWNL	NA	NetMHCpan	10.9	NA	NA	179	0.162	15.742	NA	NA	NA	12.22	NA	10.9	NA	21.31768301	NA	19.26371303	M4_p20	-0.114285714	-0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.174	179	0	0	NA	19qC2	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.952016462	sgMsh2	cell line
chr19	13502426	13502426	A	G	ENSMUST00000217001.1	2	ENSMUSG00000071629	missense	I/V	28	Olfr1477	ENSMUST00000217001.1:c.82A>G	ENSMUSP00000149565.1:p.Ile28Val	H-2-Kb	8	11	1	VIFTLIYL	IIFTLIYL	SMM	15.267	16.283	1.067	865	0.165	17.014	18.256	1.073	19.54	16.62	27.2	23.8	16.2832091	15.26651821	16.97227266	17.40764414	M4_p20	2.485714286	2.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.169	865	0	0	NA	19qA	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.924659667	sgMsh2	cell line
chr19	10207246	10207246	T	G	ENSMUST00000040372.13	1	ENSMUSG00000036372	missense	F/V	66	Tmem258	ENSMUST00000040372.13:c.196T>G	ENSMUSP00000044751.7:p.Phe66Val	H-2-Kb	8	11	1	VGVLFLLL	FGVLFLLL	NetMHC	19.2	194.49	10.13	273	0.172	37.169	178.287	4.797	194.49	19.2	271.5	29.8	162.0839455	44.53895263	157.666708	44.53895263	M4_p20	3.114285714	3.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.167	273	0	0	NA	19qA	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.913716949	sgMsh2	cell line
chr19	44973627	44973627	T	C	ENSMUST00000096053.4	1	ENSMUSG00000036097	missense	I/T	1081	Slf2	ENSMUST00000096053.4:c.3242T>C	ENSMUSP00000093758.3:p.Ile1081Thr	H-2-Kb	8	8	4	LTYTLLHL	LTYILLHL	NetMHCpan	21.4	34.2	1.598	774	0.129	46.318	52.591	1.135	36.2	30.3	34.2	21.4	74.08665723	69.6209588	68.98267002	62.33615346	M4_p20	0.785714286	0.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.133	774	0	0	NA	19qC3	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.727690744	sgMsh2	cell line
chr19	13165670	13165670	T	C	ENSMUST00000207113.2	2	ENSMUSG00000045883	missense	Y/H	219	Olfr1461	ENSMUST00000207113.2:c.655T>C	ENSMUSP00000146358.1:p.Tyr219His	H-2-Kb	8	5	7	IMIIVSHL	IMIIVSYL	NetMHC	34.05	50.12	1.472	160	0.281	97.773	104.102	1.065	50.12	34.05	65.4	46.7	142.8038776	149.534017	153.0171117	148.8469706	M4_p20	2.128571429	2.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.252	160	0	0	NA	19qA	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr19	10207246	10207246	T	G	ENSMUST00000040372.13	1	ENSMUSG00000036372	missense	F/V	66	Tmem258	ENSMUST00000040372.13:c.196T>G	ENSMUSP00000044751.7:p.Phe66Val	H-2-Kb	8	4	8	VASLFMGV	VASLFMGF	NetMHC	37.83	202.78	5.36	273	0.172	128.266	476.977	3.719	202.78	37.83	174.7	78.4	810.4757034	178.1312026	751.173053	216.6406749	M4_p20	1.9	1.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.167	273	0	0	NA	19qA	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.913716949	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	8	13	1	VTFPHYWL	NA	NetMHCpan	13.9	NA	NA	301	0.199	31.617	NA	NA	NA	50.29	NA	13.9	NA	24.5323979	NA	38.70258739	M4_p20	-0.157142857	-0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.19	301	0	0	NA	19qA	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr19	4262505	4262505	C	A	ENSMUST00000037992.15	1	ENSMUSG00000034616	missense	S/I	600	Ssh3	ENSMUST00000037992.15:c.1799G>T	ENSMUSP00000047718.8:p.Ser600Ile	H-2-Kb	8	7	5	VALHIAAL	VALHSAAL	NetMHCpan	46.9	112.2	2.392	46	0.348	82.566	87.242	1.057	58	53.77	112.2	46.9	77.93633877	129.3421274	96.54727043	111.3627636	M4_p20	2.042857143	2.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.304	46	0	0	NA	19qA	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr19	18690332	18690332	GT	G	ENSMUST00000025632.10	1	ENSMUSG00000024726	FS	S/X	222	Carnmt1	ENSMUST00000025632.10:c.672del	ENSMUSP00000025632.9:p.Phe224LeufsTer59	H-2-Kb	8	10	4	WSFLCSFL	WSFFMLFS	SMMPMBEC	41.471	1240.909	29.923	95	0.211	71.114	4360.255	61.313	8069.22	90.38	7479.6	185.9	926.2751223	51.84895408	1240.909187	41.47056956	M4_p20	2.014285714	2.014285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.202	95	0	0	NA	19qB	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr19	23210495	23210495	T	C	ENSMUST00000223934.1	NA	ENSMUSG00000024943	missense	T/A	986	Smc5	ENSMUST00000223934.1:c.2956A>G	ENSMUSP00000153364.1:p.Thr986Ala	H-2-Kb	8	11	1	AMLYLMAL	TMLYLMAL	NetMHC	153.64	132.51	0.862	437	0.064	300.834	236.749	0.787	132.51	153.64	108.7	171.4	340.9887101	430.2689433	396.9538331	505.5219295	M4_p20	2.242857143	2.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.081	437	0	0	NA	19qB	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.443180077	sgMsh2	cell line
chr19	44973627	44973627	T	C	ENSMUST00000096053.4	1	ENSMUSG00000036097	missense	I/T	1081	Slf2	ENSMUST00000096053.4:c.3242T>C	ENSMUSP00000093758.3:p.Ile1081Thr	H-2-Kb	8	5	7	AYYLTYTL	AYYLTYIL	NetMHC	157.88	325.67	2.063	774	0.129	364.856	839.945	2.302	325.67	157.88	374.5	180.5	1305.389154	569.823033	1434.630303	549.2119775	M4_p20	0.328571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.133	774	0	0	NA	19qC3	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.727690744	sgMsh2	cell line
chr19	44973627	44973627	T	C	ENSMUST00000096053.4	1	ENSMUSG00000036097	missense	I/T	1081	Slf2	ENSMUST00000096053.4:c.3242T>C	ENSMUSP00000093758.3:p.Ile1081Thr	H-2-Kb	8	6	6	YYLTYTLL	YYLTYILL	NetMHCpan	165.3	361.7	2.188	774	0.129	245.167	350.171	1.428	417.91	195.39	361.7	165.3	333.2268594	301.8144301	338.6413603	294.9442949	M4_p20	1.057142857	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.133	774	0	0	NA	19qC3	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.727690744	sgMsh2	cell line
chr19	58827590	58827590	A	C	ENSMUST00000066285.5	1	ENSMUSG00000025092	missense	F/V	74	Hspa12a	ENSMUST00000066285.5:c.220T>G	ENSMUSP00000066860.4:p.Phe74Val	H-2-Kb	8	5	7	SGYAYSVT	SGYAYSFT	NetMHCpan	146.9	64.6	0.44	244	0.131	199.416	89.955	0.451	80.2	204.86	64.6	146.9	118.5059074	238.6382195	99.71029474	193.9724271	M4_p20	0.214285714	0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.133	244	0	0	NA	19qD2	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.727690744	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	8	8	6	VNHFFVTF	VNHFFCDI	NetMHCpan	52.1	72.4	1.39	301	0.199	262.687	291.68	1.11	265.13	217.24	72.4	52.1	318.2291802	353.7854762	330.1718172	308.1342684	M4_p20	0.742857143	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.19	301	0	0	NA	19qA	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr19	18690332	18690332	GT	G	ENSMUST00000025632.10	1	ENSMUSG00000024726	FS	S/X	222	Carnmt1	ENSMUST00000025632.10:c.672del	ENSMUSP00000025632.9:p.Phe224LeufsTer59	H-2-Kb	8	49	0	RSDPFFSL	NA	SMM	150.224	NA	NA	95	0.211	215.084	NA	NA	NA	257.29	NA	357.7	NA	150.2242346	NA	172.8781076	M4_p20	0.385714286	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.202	95	0	0	NA	19qB	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr19	5982837	5982837	A	C	ENSMUST00000041827.7	1	ENSMUSG00000037451	missense	S/A	267	Slc22a20	ENSMUST00000041827.7:c.799T>G	ENSMUSP00000049473.7:p.Ser267Ala	H-2-Kb	8	6	6	VFFLYAWW	VFFLYSWW	SMM	21.22	47.945	2.259	45	0.156	168.912	331.805	1.964	564.13	295.97	4006.7	4116.2	47.94463315	21.21973715	99.48096742	41.85429201	M4_p20	1.157142857	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.175	45	0	0	NA	19qA	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr19	10054643	10054643	A	G	ENSMUST00000115995.3	1	ENSMUSG00000024664	missense	H/R	266	Fads3	ENSMUST00000115995.3:c.797A>G	ENSMUSP00000111659.2:p.His266Arg	H-2-Kb	8	11	1	RQHLYFFL	HQHLYFFL	SMMPMBEC	135.75	290.228	2.138	371	0.1	153.427	437.353	2.851	1305.83	369.59	505.1	167.3	369.6068402	139.5532644	290.2284617	135.7500506	M4_p20	0.742857143	0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.106	371	0	0	NA	19qA	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.579964051	sgMsh2	cell line
chr19	18690332	18690332	GT	G	ENSMUST00000025632.10	1	ENSMUSG00000024726	FS	S/X	222	Carnmt1	ENSMUST00000025632.10:c.672del	ENSMUSP00000025632.9:p.Phe224LeufsTer59	H-2-Kb	8	31	0	INFIPGSI	NA	NetMHCpan	107.1	NA	NA	95	0.211	428.515	NA	NA	NA	455	NA	107.1	NA	414.7056956	NA	442.3234863	M4_p20	0.785714286	0.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.202	95	0	0	NA	19qB	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr19	4840880	4840880	T	C	ENSMUST00000088653.2	NA	ENSMUSG00000067872	missense	Y/H	467	Ccdc87	ENSMUST00000088653.2:c.1399T>C	ENSMUSP00000086028.2:p.Tyr467His	H-2-Kb	8	7	5	AGVLHNHL	AGVLYNHL	SMMPMBEC	451.586	104.409	0.231	313	0.176	456.771	72.005	0.158	28.03	520.49	39.6	452.5	119.0529058	461.0414792	104.4094962	451.5855118	M4_p20	0.214285714	0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.189	313	0	0	NA	19qA	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	8	17	0	HYWLFLAL	NA	SMMPMBEC	198.948	NA	NA	301	0.199	324.952	NA	NA	NA	632.06	NA	372.1	NA	277.8049629	NA	198.9481935	M4_p20	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.19	301	0	0	NA	19qA	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr19	16383254	16383254	G	A	ENSMUST00000025541.5	1	ENSMUSG00000024639	missense	V/M	314	Gnaq	ENSMUST00000025541.5:c.940G>A	ENSMUSP00000025541.5:p.Val314Met	H-2-Kb	8	6	6	ILKMFMDL	ILKMFVDL	NetMHCpan	249.7	319.7	1.28	274	0.186	388.374	474.546	1.222	1460.9	633.96	319.7	249.7	595.3056439	459.9811133	353.7854762	316.7670499	M4_p20	0.971428571	1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.186	274	0	0	NA	19qA	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr19	23210495	23210495	T	C	ENSMUST00000223934.1	NA	ENSMUSG00000024943	missense	T/A	986	Smc5	ENSMUST00000223934.1:c.2956A>G	ENSMUSP00000153364.1:p.Thr986Ala	H-2-Kb	9	10	2	SAMLYLMAL	STMLYLMAL	NetMHC	15.11	16.56	1.096	437	0.064	50.041	67.355	1.346	16.56	15.11	19.6	16.5	115.1091906	83.58146902	137.8002483	106.721028	M4_p20	2.242857143	2.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.081	437	0	0	NA	19qB	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.443180077	sgMsh2	cell line
chr19	44973627	44973627	T	C	ENSMUST00000096053.4	1	ENSMUSG00000036097	missense	I/T	1081	Slf2	ENSMUST00000096053.4:c.3242T>C	ENSMUSP00000093758.3:p.Ile1081Thr	H-2-Kb	9	5	7	AYYLTYTLL	AYYLTYILL	NetMHC	38.65	71.83	1.858	774	0.129	52.197	70.367	1.348	71.83	38.65	163.4	63.7	44.06664633	41.69749833	68.90488306	62.69746764	M4_p20	1.057142857	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.133	774	0	0	NA	19qC3	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.727690744	sgMsh2	cell line
chr19	12675042	12675042	T	G	ENSMUST00000208494.2	3	ENSMUSG00000044441	missense	V/G	279	Olfr1442	ENSMUST00000208494.2:c.836T>G	ENSMUSP00000146803.1:p.Val279Gly	H-2-Kb	9	4	8	VSVFYTMGI	VSVFYTMVI	NetMHCpan	39.1	112.1	2.867	421	0.154	141.755	309.854	2.186	352.01	61.05	112.1	39.1	342.8546153	224.4450336	276.8534884	222.4590099	M4_p20	1.571428571	1.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.153	421	0	0	NA	19qA	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.837117923	sgMsh2	cell line
chr19	4262505	4262505	C	A	ENSMUST00000037992.15	1	ENSMUSG00000034616	missense	S/I	600	Ssh3	ENSMUST00000037992.15:c.1799G>T	ENSMUSP00000047718.8:p.Ser600Ile	H-2-Kb	9	6	6	VVALHIAAL	VVALHSAAL	NetMHCpan	63	104.8	1.663	46	0.348	96.105	102.644	1.068	75.84	67.44	104.8	63	100.4870276	124.7699497	151.0949676	145.9654263	M4_p20	2.042857143	2.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.304	46	0	0	NA	19qA	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr19	18690332	18690332	GT	G	ENSMUST00000025632.10	1	ENSMUSG00000024726	FS	S/X	222	Carnmt1	ENSMUST00000025632.10:c.672del	ENSMUSP00000025632.9:p.Phe224LeufsTer59	H-2-Kb	9	49	0	RSDPFFSLM	NA	NetMHC	108.81	NA	NA	95	0.211	198.507	NA	NA	NA	108.81	NA	116.4	NA	280.61443	NA	370.0411313	M4_p20	0.771428571	0.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.202	95	0	0	NA	19qB	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	9	13	1	VTFPHYWLF	NA	NetMHCpan	32	NA	NA	301	0.199	35.13	NA	NA	NA	109.74	NA	32	NA	35.08407252	NA	35.17628732	M4_p20	0.342857143	0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.19	301	0	0	NA	19qA	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr19	5985928	5985928	T	C	ENSMUST00000041827.7	1	ENSMUSG00000037451	missense	I/M	71	Slc22a20	ENSMUST00000041827.7:c.213A>G	ENSMUSP00000049473.7:p.Ile71Met	H-2-Kb	9	5	7	VWLRAAMPL	VWLRAAIPL	NetMHC	113.41	232.32	2.048	118	0.153	210.641	272.666	1.294	232.32	113.41	313	195.8	232.3325184	225.4810248	452.1161284	456.2995075	M4_p20	1	1.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.173	118	0	0	NA	19qA	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr19	44973627	44973627	T	C	ENSMUST00000096053.4	1	ENSMUSG00000036097	missense	I/T	1081	Slf2	ENSMUST00000096053.4:c.3242T>C	ENSMUSP00000093758.3:p.Ile1081Thr	H-2-Kb	9	4	8	QAYYLTYTL	QAYYLTYIL	NetMHCpan	118.9	287.1	2.415	774	0.129	148.952	306.938	2.061	357.17	145.46	287.1	118.9	170.2589693	152.4438821	326.7758854	276.8534884	M4_p20	0.328571429	0.328571429	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.133	774	0	0	NA	19qC3	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.727690744	sgMsh2	cell line
chr19	32057813	32057813	TG	T	ENSMUST00000237104.1	NA	ENSMUSG00000024887	FS	T/X	37	Asah2	ENSMUST00000237104.1:c.111del	ENSMUSP00000157424.1:p.Ile38LeufsTer59	H-2-Kb	9	42	0	TSLHFGTSV	NA	NetMHC	172.6	NA	NA	290	0.19	380.819	NA	NA	NA	172.6	NA	179.2	NA	717.9761204	NA	582.4383998	M4_p20	0.814285714	0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.188	290	0	0	NA	19qC1	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	9	7	7	VVNHFFVTF	VVNHFFCDI	SMM	104.018	301.377	2.897	301	0.199	110.553	279.147	2.525	290.84	180.67	126.9	112.4	301.3769268	104.0183595	267.4545558	108.7051201	M4_p20	0.742857143	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.19	301	0	0	NA	19qA	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr19	12675042	12675042	T	G	ENSMUST00000208494.2	3	ENSMUSG00000044441	missense	V/G	279	Olfr1442	ENSMUST00000208494.2:c.836T>G	ENSMUSP00000146803.1:p.Val279Gly	H-2-Kb	9	6	6	VFYTMGIPM	VFYTMVIPM	SMM	108.67	69.841	0.643	421	0.154	154.1	90.332	0.586	101.55	185.95	132	235.4	69.84092778	108.6700833	79.11339102	122.2503187	M4_p20	0.614285714	1.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.153	421	0	0	NA	19qA	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.837117923	sgMsh2	cell line
chr19	38043240	38043240	TA	T	ENSMUST00000041475.15	2	ENSMUSG00000048612	FS	F/X	28	Myof	ENSMUST00000041475.15:c.84del	ENSMUSP00000045036.8:p.Phe28LeufsTer27	H-2-Kb	9	27	0	LSGMRFWNL	NA	SMMPMBEC	147.656	NA	NA	179	0.162	207.055	NA	NA	NA	194.91	NA	219.2	NA	230.202481	NA	147.6556263	M4_p20	-0.114285714	0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.174	179	0	0	NA	19qC2	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.952016462	sgMsh2	cell line
chr19	13705333	13705333	A	G	ENSMUST00000216366.1	5	ENSMUSG00000051156	missense	T/A	169	Olfr1491	ENSMUST00000216366.1:c.505A>G	ENSMUSP00000149071.1:p.Thr169Ala	H-2-Kb	9	6	6	TALIFALPF	TALIFTLPF	NetMHC	239.87	221.04	0.921	529	0.134	260.671	213.815	0.82	221.04	239.87	225.8	251.5	206.5903351	269.8422814	205.7074402	286.5827198	M4_p20	2.557142857	2.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.128	529	0	0	NA	19qA	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.700333949	sgMsh2	cell line
chr19	44973162	44973162	A	G	ENSMUST00000096053.4	1	ENSMUSG00000036097	missense	Q/R	1040	Slf2	ENSMUST00000096053.4:c.3119A>G	ENSMUSP00000093758.3:p.Gln1040Arg	H-2-Kb	9	4	8	VLHRYLVRM	VLHRYLVQM	NetMHCpan	58.4	86.5	1.481	332	0.16	270.502	359.855	1.33	409.79	248.42	86.5	58.4	460.3731641	353.2726369	309.920283	292.583614	M4_p20	-0.514285714	1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.163	332	0	0	NA	19qC3	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.891831513	sgMsh2	cell line
chr19	16383254	16383254	G	A	ENSMUST00000025541.5	1	ENSMUSG00000024639	missense	V/M	314	Gnaq	ENSMUST00000025541.5:c.940G>A	ENSMUSP00000025541.5:p.Val314Met	H-2-Kb	9	5	7	FILKMFMDL	FILKMFVDL	NetMHC	268.8	623.27	2.319	274	0.186	358.268	502.216	1.402	623.27	268.8	645.4	411.6	381.1623536	362.3347605	317.8703353	354.201177	M4_p20	0.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.186	274	0	0	NA	19qA	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr19	56908916	56908916	G	T	ENSMUST00000026068.7	1	ENSMUSG00000025082	missense	S/I	551	Vwa2	ENSMUST00000026068.7:c.1652G>T	ENSMUSP00000026068.7:p.Ser551Ile	H-2-Kb	9	10	2	QIFIRKCTL	QSFIRKCTL	SMM	197.292	139.994	0.71	178	0.129	282.666	151.697	0.537	139.2	323.09	183.3	474.7	139.9941861	197.2922383	163.3992279	242.2423104	M4_p20	0.642857143	0.742857143	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.138	178	0	0	NA	19qD2	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.755047539	sgMsh2	cell line
chr19	25162947	25162947	A	G	ENSMUST00000025831.7	1	ENSMUSG00000052085	missense	K/E	1284	Dock8	ENSMUST00000025831.7:c.3850A>G	ENSMUSP00000025831.6:p.Lys1284Glu	H-2-Kb	9	8	4	LPYEQYNML	LPYKQYNML	SMM	315.58	330.453	1.047	70	0.129	366.641	364.395	0.994	295.11	331.26	441.2	536.8	330.4532291	315.5803838	398.3364054	402.0221668	M4_p20	-1.057142857	-1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.161	70	0	0	NA	19qB	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.880888795	sgMsh2	cell line
chr19	38043240	38043240	TA	T	ENSMUST00000041475.15	2	ENSMUSG00000048612	FS	F/X	28	Myof	ENSMUST00000041475.15:c.84del	ENSMUSP00000045036.8:p.Phe28LeufsTer27	H-2-Kb	9	22	0	IMNSTLSGM	NA	SMM	268.602	NA	NA	179	0.162	486.171	NA	NA	NA	432.52	NA	1028.4	NA	268.6024688	NA	539.8212792	M4_p20	-0.071428571	0.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.174	179	0	0	NA	19qC2	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.952016462	sgMsh2	cell line
chr19	44973627	44973627	T	C	ENSMUST00000096053.4	1	ENSMUSG00000036097	missense	I/T	1081	Slf2	ENSMUST00000096053.4:c.3242T>C	ENSMUSP00000093758.3:p.Ile1081Thr	H-2-Kb	9	8	4	LTYTLLHLV	LTYILLHLV	NetMHCpan	420.8	764.9	1.818	774	0.129	426.798	410.951	0.963	451.86	440.77	764.9	420.8	360.6699835	420.8332054	370.0411313	432.7628777	M4_p20	1.485714286	1.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.133	774	0	0	NA	19qC3	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.727690744	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	9	17	0	HYWLFLALV	NA	SMM	304.166	NA	NA	301	0.199	437.286	NA	NA	NA	459.38	NA	1465.1	NA	304.1655332	NA	415.1929781	M4_p20	2.757142857	2.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.19	301	0	0	NA	19qA	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	9	14	0	TFPHYWLFL	NA	NetMHCpan	353	NA	NA	301	0.199	400.076	NA	NA	NA	462.8	NA	353	NA	426.6875784	NA	373.4650797	M4_p20	0.485714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.19	301	0	0	NA	19qA	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr19	5982837	5982837	A	C	ENSMUST00000041827.7	1	ENSMUSG00000037451	missense	S/A	267	Slc22a20	ENSMUST00000041827.7:c.799T>G	ENSMUSP00000049473.7:p.Ser267Ala	H-2-Kb	9	6	6	VFFLYAWWL	VFFLYSWWL	SMM	111.715	68.251	0.611	45	0.156	477.142	326.92	0.685	561.53	819.31	1138.8	1653.8	68.25115418	111.7146168	92.31026548	134.9739632	M4_p20	1.3	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.175	45	0	0	NA	19qA	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	9	16	0	PHYWLFLAL	NA	SMM	166.001	NA	NA	301	0.199	366.318	NA	NA	NA	971.99	NA	541.1	NA	166.0007308	NA	191.5358177	M4_p20	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.19	301	0	0	NA	19qA	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr2	24953277	24953277	T	C	ENSMUST00000028350.8	1	ENSMUSG00000026974	missense	V/A	87	Zmynd19	ENSMUST00000028350.8:c.260T>C	ENSMUSP00000028350.3:p.Val87Ala	H-2-Db	9	10	2	VAHLNAVTV	VVHLNAVTV	NetMHC	8.32	172.04	20.678	109	0.275	28.28	261.657	9.252	172.04	8.32	293.9	20.7	229.4140437	35.86080216	327.0167515	51.23538453	M4_p20	0.942857143	1.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.287	109	0	0	NA	2qA3	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr2	36230677	36230677	T	C	ENSMUST00000062069.5	1	ENSMUSG00000047250	missense	L/P	6	Ptgs1	ENSMUST00000062069.5:c.17T>C	ENSMUSP00000059977.5:p.Leu6Pro	H-2-Db	9	4	3	RSPSLWFPL	RSLSLWFPL	NetMHC	185.7	138.17	0.744	49	0.367	273.712	117.34	0.429	138.17	185.7	203.4	251.2	91.1213195	296.2238349	96.50948542	321.0480231	M4_p20	0.785714286	0.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.314	49	0	0	NA	2qB	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr2	88006632	88006632	T	G	ENSMUST00000099839.3	NA	ENSMUSG00000075141	missense	M/L	49	Olfr1160	ENSMUST00000099839.3:c.145A>C	ENSMUSP00000097427.3:p.Met49Leu	H-2-Db	9	3	9	FSIYSITLL	FSIYSITLM	NetMHC	196.44	127.02	0.647	585	0.113	334.623	267.366	0.799	127.02	196.44	241.9	253.7	292.8329887	415.5468552	336.9535219	439.1066356	M4_p20	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.114	585	0	0	NA	2qD	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.623734923	sgMsh2	cell line
chr2	88006632	88006632	T	G	ENSMUST00000099839.3	NA	ENSMUSG00000075141	missense	M/L	49	Olfr1160	ENSMUST00000099839.3:c.145A>C	ENSMUSP00000097427.3:p.Met49Leu	H-2-Db	9	6	6	YSITLLGNI	YSITLMGNI	NetMHC	256.69	185.65	0.723	585	0.113	487.354	413.213	0.848	185.65	256.69	1299.1	1238	453.5445995	515.9647117	372.8807814	458.7435806	M4_p20	1.714285714	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.114	585	0	0	NA	2qD	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.623734923	sgMsh2	cell line
chr2	31207697	31207697	A	G	ENSMUST00000056433.6	1	ENSMUSG00000000194	missense	K/R	441	Gpr107	ENSMUST00000056433.6:c.1322A>G	ENSMUSP00000056739.5:p.Lys441Arg	H-2-Db	9	4	8	KAAINLARL	KAAINLAKL	NetMHCpan	101.4	102.4	1.01	339	0.251	325.555	235.751	0.724	167.68	392.01	102.4	101.4	303.8225469	298.2771604	364.3929785	352.8336521	M4_p20	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.256	339	0	0	NA	2qB	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr2	24687761	24687761	A	G	ENSMUST00000041342.11	1	ENSMUSG00000004113	missense	L/P	700	Cacna1b	ENSMUST00000041342.11:c.2099T>C	ENSMUSP00000037416.5:p.Leu700Pro	H-2-Db	9	4	8	TLFGNYTPL	TLFGNYTLL	NetMHCpan	113.2	549.8	4.857	126	0.238	218.505	712.435	3.26	2806.17	647.6	549.8	113.2	840.6592577	260.9876759	584.2113633	176.0232357	M4_p20	-0.128571429	-1.27E-16	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.244	126	0	0	NA	2qA3	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr2	22577871	22577871	T	C	ENSMUST00000044749.13	5	ENSMUSG00000025716	missense	V/A	1317	Myo3a	ENSMUST00000044749.13:c.3950T>C	ENSMUSP00000046329.7:p.Val1317Ala	H-2-Db	9	10	2	SAVTQNAPL	SVVTQNAPL	SMMPMBEC	357.742	2283.337	6.383	140	0.264	496.921	3714.743	7.476	9108.98	745.43	4105.8	474.3	3323.686094	519.5412082	2283.336925	357.7420571	M4_p20	0.071428571	0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.264	140	0	0	NA	2qA3	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr2	88006632	88006632	T	G	ENSMUST00000099839.3	NA	ENSMUSG00000075141	missense	M/L	49	Olfr1160	ENSMUST00000099839.3:c.145A>C	ENSMUSP00000097427.3:p.Met49Leu	H-2-Kb	8	4	8	SIYSITLL	SIYSITLM	NetMHC	23.89	82.42	3.45	585	0.113	68.167	260.849	3.827	82.42	23.89	64.5	24.2	480.5515695	119.8781411	439.2785529	112.1346934	M4_p20	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.114	585	0	0	NA	2qD	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.623734923	sgMsh2	cell line
chr2	31207697	31207697	A	G	ENSMUST00000056433.6	1	ENSMUSG00000000194	missense	K/R	441	Gpr107	ENSMUST00000056433.6:c.1322A>G	ENSMUSP00000056739.5:p.Lys441Arg	H-2-Kb	8	5	7	AAINLARL	AAINLAKL	NetMHC	45.63	189.95	4.163	339	0.251	104.51	266.237	2.547	189.95	45.63	211.3	91.6	351.3500341	122.9532464	321.1737185	117.4194387	M4_p20	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.256	339	0	0	NA	2qB	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr2	85786374	85786374	T	C	ENSMUST00000215945.1	5	ENSMUSG00000033850	missense	F/L	288	Olfr1015	ENSMUST00000215945.1:c.862T>C	ENSMUSP00000148957.1:p.Phe288Leu	H-2-Kb	8	4	8	INPLLNPL	INPLLNPF	NetMHC	54.38	1179.23	21.685	311	0.154	137.353	1709.61	12.447	1179.23	54.38	1406.7	150.9	2012.51905	123.8055176	2012.51905	160.228586	M4_p20	0.171428571	0.271428571	FALSE	FALSE	FALSE	0	FALSE	2	Mutect2;Strelka2;MuSe;Vardict	4	0.152	311	0	0	NA	2qD	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.831646564	sgMsh2	cell line
chr2	25442390	25442390	CT	C	ENSMUST00000102919.3	1	ENSMUSG00000026944	FS	P/X	1478	Abca2	ENSMUST00000102919.3:c.4434del	ENSMUSP00000099983.3:p.Glu1479ArgfsTer50	H-2-Kb	8	6	7	VALSVPRL	VALSVPEI	NetMHC	82.86	2565.7	30.964	100	0.22	115.238	2687.959	23.325	2565.7	82.86	1799.7	115.2	2810.217928	115.2762924	3233.999884	142.1477533	M4_p20	0.957142857	1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.219	100	0	0	NA	2qA3	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr2	26951726	26951726	T	G	ENSMUST00000055406.8	1	ENSMUSG00000049897	missense	L/V	537	Stkld1	ENSMUST00000055406.8:c.1609T>G	ENSMUSP00000062967.8:p.Leu537Val	H-2-Kb	8	4	8	VNNAFRGV	VNNAFRGL	SMM	73.407	20.547	0.28	140	0.229	97.335	24.036	0.247	18.98	94.96	37.4	197.7	20.5466016	73.40742668	27.52580317	99.71029474	M4_p20	-0.442857143	-0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.225	140	0	0	NA	2qA3	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr2	27171316	27171316	A	C	ENSMUST00000000910.6	1	ENSMUSG00000000889	missense	E/A	254	Dbh	ENSMUST00000000910.6:c.761A>C	ENSMUSP00000000910.6:p.Glu254Ala	H-2-Kb	8	6	6	HIIMYAAI	HIIMYEAI	NetMHC	104.55	1826.03	17.466	141	0.213	162.959	1375.3	8.44	1826.03	104.55	1000.2	175	1654.778997	236.9954455	1095.821962	150.9176382	M4_p20	2.528571429	2.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.209	141	0	0	NA	2qA3	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr2	31207697	31207697	A	G	ENSMUST00000056433.6	1	ENSMUSG00000000194	missense	K/R	441	Gpr107	ENSMUST00000056433.6:c.1322A>G	ENSMUSP00000056739.5:p.Lys441Arg	H-2-Kb	8	7	5	INLARLRL	INLAKLRL	NetMHCpan	74.3	156.3	2.104	339	0.251	185.389	321.112	1.732	315.08	157.11	156.3	74.3	327.1447838	213.6682534	353.7854762	227.3735801	M4_p20	0.1	0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.256	339	0	0	NA	2qB	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr2	24687761	24687761	A	G	ENSMUST00000041342.11	1	ENSMUSG00000004113	missense	L/P	700	Cacna1b	ENSMUST00000041342.11:c.2099T>C	ENSMUSP00000037416.5:p.Leu700Pro	H-2-Kb	8	5	7	LFGNYTPL	LFGNYTLL	SMMPMBEC	165.097	454.716	2.754	126	0.238	222.376	562.888	2.531	663.17	251.67	614.4	324.9	511.3755976	193.0812048	454.715753	165.0973111	M4_p20	-0.128571429	-0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.244	126	0	0	NA	2qA3	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr2	36230677	36230677	T	C	ENSMUST00000062069.5	1	ENSMUSG00000047250	missense	L/P	6	Ptgs1	ENSMUST00000062069.5:c.17T>C	ENSMUSP00000059977.5:p.Leu6Pro	H-2-Kb	8	6	1	PSLWFPLL	LSLWFPLL	SMM	236.995	34.099	0.144	49	0.367	295.234	22.649	0.077	8.94	285.86	11.2	373.9	34.09887101	236.9954455	35.87071224	304.6070846	M4_p20	1.557142857	1.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.314	49	0	0	NA	2qB	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr2	25442390	25442390	CT	C	ENSMUST00000102919.3	1	ENSMUSG00000026944	FS	P/X	1478	Abca2	ENSMUST00000102919.3:c.4434del	ENSMUSP00000099983.3:p.Glu1479ArgfsTer50	H-2-Kb	8	34	0	ATLSLMPM	NA	NetMHC	298.32	NA	NA	100	0.22	414.744	NA	NA	NA	298.32	NA	328.6	NA	500.8872766	NA	533.0156983	M4_p20	1.185714286	1.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.219	100	0	0	NA	2qA3	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr2	4935991	4935991	A	G	ENSMUST00000027975.7	1	ENSMUSG00000026664	missense	H/R	234	Phyh	ENSMUST00000027975.7:c.701A>G	ENSMUSP00000027975.7:p.His234Arg	H-2-Kb	8	6	6	VNKMYRGI	VNKMYHGI	NetMHCpan	289.4	186.9	0.646	272	0.191	335.643	419.597	1.25	556.85	339.59	186.9	289.4	465.3074435	419.5077612	373.8866857	331.6958211	M4_p20	-1.028571429	-1.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	272	0	0	NA	2qA1	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr2	37405335	37405335	A	C	ENSMUST00000100143.9	5	ENSMUSG00000075376	missense	V/G	223	Rc3h2	ENSMUST00000100143.9:c.668T>G	ENSMUSP00000097721.3:p.Val223Gly	H-2-Kb	8	8	4	VLFGVQRL	VLFVVQRL	NetMHCpan	165.8	52.4	0.316	162	0.222	207.26	71.12	0.343	63.22	364.58	52.4	165.8	79.02054124	199.8664966	79.93555598	214.6545013	M4_p20	0.885714286	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.242	162	0	0	NA	2qB	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr2	25442390	25442390	CT	C	ENSMUST00000102919.3	1	ENSMUSG00000026944	FS	P/X	1478	Abca2	ENSMUST00000102919.3:c.4434del	ENSMUSP00000099983.3:p.Glu1479ArgfsTer50	H-2-Kb	8	14	0	VTYLHWSC	NA	SMM	141.495	NA	NA	100	0.22	195.341	NA	NA	NA	675.71	NA	187.1	NA	141.4946437	NA	203.5822922	M4_p20	-0.085714286	0.157142857	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.219	100	0	0	NA	2qA3	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr2	40697525	40697525	T	G	ENSMUST00000052550.12	1	ENSMUSG00000049252	missense	N/T	3906	Lrp1b	ENSMUST00000052550.12:c.11717A>C	ENSMUSP00000054275.7:p.Asn3906Thr	H-2-Kb	8	6	6	FVYPFTYS	FVYPFNYS	SMM	123.521	158.03	1.279	201	0.204	301.026	455.035	1.512	1179.6	697.16	627.1	400.8	158.0301673	123.5207728	282.9697428	201.251905	M4_p20	0.185714286	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	201	0	0	NA	2qB	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr2	86806924	86806924	A	G	ENSMUST00000216117.1	5	ENSMUSG00000078420	missense	L/P	25	Olfr141	ENSMUST00000216117.1:c.74T>C	ENSMUSP00000150485.1:p.Leu25Pro	H-2-Kb	8	9	3	IIPFLLFL	IILFLLFL	NetMHCpan	206.4	540.7	2.62	504	0.208	258.322	328.121	1.27	559.81	707.53	540.7	206.4	93.70008827	219.6544469	115.5420317	296.9887511	M4_p20	2.842857143	2.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.201	504	0	0	NA	2qD	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr2	40697525	40697525	T	G	ENSMUST00000052550.12	1	ENSMUSG00000049252	missense	N/T	3906	Lrp1b	ENSMUST00000052550.12:c.11717A>C	ENSMUSP00000054275.7:p.Asn3906Thr	H-2-Kb	8	4	8	LGFVYPFT	LGFVYPFN	NetMHCpan	212.8	1968.3	9.25	201	0.204	442.233	1103.469	2.495	10018.04	1099.97	1968.3	212.8	225.2890066	554.2937734	238.6382195	330.1718172	M4_p20	0.828571429	1.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	201	0	0	NA	2qB	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr2	24687761	24687761	A	G	ENSMUST00000041342.11	1	ENSMUSG00000004113	missense	L/P	700	Cacna1b	ENSMUST00000041342.11:c.2099T>C	ENSMUSP00000037416.5:p.Leu700Pro	H-2-Kb	9	4	8	TLFGNYTPL	TLFGNYTLL	NetMHCpan	51	85.6	1.678	126	0.238	88.814	134.728	1.517	105.68	60.07	85.6	51	193.2457716	151.7434661	163.775902	117.5574075	M4_p20	-0.128571429	-1.27E-16	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.244	126	0	0	NA	2qA3	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr2	68118819	68118819	A	G	ENSMUST00000112346.2	NA	ENSMUSG00000034780	missense	S/G	293	B3galt1	ENSMUST00000112346.2:c.877A>G	ENSMUSP00000107965.2:p.Ser293Gly	H-2-Kb	9	10	2	YGLCRYRRV	YSLCRYRRV	NetMHC	124.84	39.29	0.315	377	0.231	342.339	134.347	0.392	39.29	124.84	116.2	280.8	165.6189397	475.4556362	152.4930322	403.8778168	M4_p20	-0.614285714	-0.614285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.236	377	0	0	NA	2qC1.3	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr2	86160001	86160001	T	C	ENSMUST00000215624.1	NA	ENSMUSG00000075202	missense	Y/C	123	Olfr1042	ENSMUST00000215624.1:c.368A>G	ENSMUSP00000151053.1:p.Tyr123Cys	H-2-Kb	9	6	6	MAYDRCVAI	MAYDRYVAI	NetMHCpan	132.7	14.4	0.109	579	0.183	145.305	30.259	0.208	27.08	145.65	14.4	132.7	39.27443988	184.1238299	33.43874735	144.9606074	M4_p20	0.528571429	0.528571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.185	579	0	0	NA	2qD	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr2	36230677	36230677	T	C	ENSMUST00000062069.5	1	ENSMUSG00000047250	missense	L/P	6	Ptgs1	ENSMUST00000062069.5:c.17T>C	ENSMUSP00000059977.5:p.Leu6Pro	H-2-Kb	9	4	3	RSPSLWFPL	RSLSLWFPL	NetMHCpan	107	120.4	1.125	49	0.367	279.572	194.599	0.696	165.27	175.34	120.4	107	223.9288243	383.8044448	282.000579	532.4146536	M4_p20	0.785714286	0.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.314	49	0	0	NA	2qB	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr2	61806339	61806339	TA	T	ENSMUST00000102737.4	2	ENSMUSG00000035033	FS	K/X	8	Tbr1	ENSMUST00000102737.4:c.31del	ENSMUSP00000099798.4:p.Ser11AlafsTer36	H-2-Kb	9	5	7	RGFKKKAQL	RGFKKKSPA	NetMHC	203.62	4296.19	21.099	50	0.4	381.031	3670.68	9.634	4296.19	203.62	3485.6	329.3	3855.760057	648.7987433	3127.879401	432.7628777	M4_p20	-0.971428571	-0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.4	50	0	0	NA	2qC1.3	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr2	31207697	31207697	A	G	ENSMUST00000056433.6	1	ENSMUSG00000000194	missense	K/R	441	Gpr107	ENSMUST00000056433.6:c.1322A>G	ENSMUSP00000056739.5:p.Lys441Arg	H-2-Kb	9	7	5	INLARLRLF	INLAKLRLF	SMM	221.366	331.215	1.496	339	0.251	236.336	355.812	1.506	295.92	230.43	501.3	275	331.2150024	221.3655323	380.4083139	242.2423104	M4_p20	1	1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.256	339	0	0	NA	2qB	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr2	24802031	24802031	A	C	ENSMUST00000147147.7	1	ENSMUSG00000036893	missense	F/V	1149	Ehmt1	ENSMUST00000147147.7:c.3445T>G	ENSMUSP00000119057.2:p.Phe1149Val	H-2-Kb	9	11	1	VVCEYVGEL	FVCEYVGEL	NetMHCpan	199.8	1113.1	5.571	85	0.259	254.386	1132.115	4.45	1151.13	238.22	1113.1	199.8	1259.244318	425.7062242	803.9888022	270.5515336	M4_p20	0.257142857	1.414285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.26	85	0	0	NA	2qA3	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr2	86084932	86084932	T	C	ENSMUST00000216886.1	5	ENSMUSG00000075205	missense	I/V	282	Olfr1037	ENSMUST00000216886.1:c.844A>G	ENSMUSP00000150319.1:p.Ile282Val	H-2-Kb	9	9	3	IVVPMLNPM	IVIPMLNPM	SMM	258.291	176.649	0.684	713	0.028	270.745	169.239	0.625	161.83	275.19	142.2	266.3	176.6485187	258.291432	228.165512	331.3217908	M4_p20	0.728571429	1.928571429	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;Vardict	3	0.027	713	0	0	NA	2qD	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.147726692	sgMsh2	cell line
chr2	86084932	86084932	T	C	ENSMUST00000216886.1	5	ENSMUSG00000075205	missense	I/V	282	Olfr1037	ENSMUST00000216886.1:c.844A>G	ENSMUSP00000150319.1:p.Ile282Val	H-2-Kb	9	5	7	VFYTIVVPM	VFYTIVIPM	SMMPMBEC	166.821	184.183	1.104	713	0.028	232.828	238.017	1.022	291.85	278.54	357.1	279.4	183.2778578	187.1156015	184.183194	166.8207233	M4_p20	1.6	2.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.027	713	0	0	NA	2qD	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.147726692	sgMsh2	cell line
chr2	87974216	87974216	A	G	ENSMUST00000099840.1	NA	ENSMUSG00000075142	missense	Y/H	150	Olfr74	ENSMUST00000099840.1:c.448T>C	ENSMUSP00000097428.1:p.Tyr150His	H-2-Kb	9	11	1	HAWGFTCSL	YAWGFTCSL	NetMHCpan	262.3	104.5	0.398	722	0.13	397.627	202.231	0.509	135.24	373.45	104.5	262.3	269.2216614	421.8033261	307.7868068	520.2954165	M4_p20	0.9	0.9	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.132	722	0	0	NA	2qD	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.722219385	sgMsh2	cell line
chr2	86806924	86806924	A	G	ENSMUST00000216117.1	5	ENSMUSG00000078420	missense	L/P	25	Olfr141	ENSMUST00000216117.1:c.74T>C	ENSMUSP00000150485.1:p.Leu25Pro	H-2-Kb	9	8	4	QIIPFLLFL	QIILFLLFL	NetMHCpan	220.4	1503.4	6.821	504	0.208	351.234	313.492	0.893	323.42	389.78	1503.4	220.4	185.8275068	312.6871254	303.5638135	498.023688	M4_p20	2.842857143	2.942857143	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.201	504	0	0	NA	2qD	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr2	25442390	25442390	CT	C	ENSMUST00000102919.3	1	ENSMUSG00000026944	FS	P/X	1478	Abca2	ENSMUST00000102919.3:c.4434del	ENSMUSP00000099983.3:p.Glu1479ArgfsTer50	H-2-Kb	9	33	0	VATLSLMPM	NA	SMM	361.501	NA	NA	100	0.22	477.615	NA	NA	NA	464.04	NA	632.7	NA	361.5014137	NA	491.1905468	M4_p20	1.185714286	2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.219	100	0	0	NA	2qA3	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr2	85786374	85786374	T	C	ENSMUST00000215945.1	5	ENSMUSG00000033850	missense	F/L	288	Olfr1015	ENSMUST00000215945.1:c.862T>C	ENSMUSP00000148957.1:p.Phe288Leu	H-2-Kb	9	3	9	IINPLLNPL	IINPLLNPF	NetMHCpan	438.7	1653.4	3.769	311	0.154	476.268	1172.73	2.462	1420.23	481.44	1653.4	438.7	794.5294511	471.0966327	925.2306262	534.872168	M4_p20	0.171428571	1.142857143	FALSE	FALSE	FALSE	0	FALSE	2	Mutect2;Strelka2;MuSe;Vardict	4	0.152	311	0	0	NA	2qD	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.831646564	sgMsh2	cell line
chr2	87656102	87656102	A	AT	ENSMUST00000135875.3	5	ENSMUSG00000111747	FS	M/NX	273	Olfr1134	ENSMUST00000135875.3:c.817dup	ENSMUSP00000150837.1:p.Met273AsnfsTer23	H-2-Kb	9	20	0	DSYVKPTYL	NA	SMM	254.748	NA	NA	410	0.132	435.96	NA	NA	NA	486.22	NA	545.4	NA	254.7475407	NA	385.7003207	M4_p20	-0.114285714	-0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.143	410	0	0	NA	2qD	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.782404333	sgMsh2	cell line
chr2	158768178	158768178	C	T	ENSMUST00000029183.2	1	ENSMUSG00000027654	missense	P/L	22	Fam83d	ENSMUST00000029183.2:c.65C>T	ENSMUSP00000029183.2:p.Pro22Leu	H-2-Db	9	8	4	CGPLNPTEL	CGPPNPTEL	NetMHC	65.56	425.32	6.487	53	0.34	216.905	644.766	2.973	425.32	65.56	306.4	93.7	864.2114181	340.1104688	1154.968129	410.7428385	M4_p20	-0.471428571	-0.214285714	TRUE	FALSE	FALSE	1	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.36	53	0	0	NA	2qH1	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr2	150763636	150763636	A	G	ENSMUST00000094467.5	1	ENSMUSG00000033068	missense	Y/C	262	Entpd6	ENSMUST00000094467.5:c.785A>G	ENSMUSP00000092038.5:p.Tyr262Cys	H-2-Kb	8	11	1	CSYSYLGL	YSYSYLGL	NetMHC	3.75	2.99	0.797	54	0.278	6.365	4.984	0.783	2.99	3.75	3.5	4.9	6.467553055	7.829607656	6.819303192	10.53755853	M4_p20	0.428571429	0.428571429	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.294	54	0	0	NA	2qG3	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr2	131274254	131274254	T	C	ENSMUST00000183349.1	3	ENSMUSG00000037514	missense	I/T	24	Pank2	ENSMUST00000183349.1:c.70T>C	ENSMUSP00000139203.1:p.Ile24Thr	H-2-Kb	8	8	4	LSRTFSHL	LSRIFSHL	NetMHC	6.68	6.6	0.988	48	0.375	22.689	20.587	0.907	6.6	6.68	16.3	22.9	26.10597994	24.5323979	24.87367755	22.47708563	M4_p20	-0.485714286	-0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.333	48	0	0	NA	2qF1	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr2	132240580	132240580	A	G	ENSMUST00000110164.7	2	ENSMUSG00000027341	missense	F/S	90	Tmem230	ENSMUST00000110164.7:c.269T>C	ENSMUSP00000105793.1:p.Phe90Ser	H-2-Kb	8	11	1	SLPGFYHL	FLPGFYHL	NetMHCpan	98.2	522.1	5.317	188	0.207	164.475	459.527	2.794	694.44	114.79	522.1	98.2	387.9180607	214.1608096	396.9538331	229.4774419	M4_p20	0.557142857	0.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.21	188	0	0	NA	2qF2	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr2	88025662	88025662	TC	T	ENSMUST00000214438.1	5	ENSMUSG00000045150	FS	L/X	313	Olfr1161	ENSMUST00000214438.1:c.943del	ENSMUSP00000150251.1:p.His315IlefsTer31	H-2-Kb	8	9	5	IALPIYPL	IALPHLSS	NetMHCpan	64.7	5527.5	85.433	48	0.271	192.009	4399.474	22.913	10853.72	131.24	5527.5	64.7	1724.80499	252.7784229	3271.447838	258.0714726	M4_p20	1.342857143	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.256	48	0	0	NA	2qD	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr2	152004194	152004194	T	C	ENSMUST00000073228.11	1	ENSMUSG00000027463	missense	V/A	25	Slc52a3	ENSMUST00000073228.11:c.74T>C	ENSMUSP00000072961.5:p.Val25Ala	H-2-Kb	8	6	6	INGLWAEL	INGLWVEL	SMMPMBEC	144.125	415.662	2.884	67	0.254	176.594	546.352	3.094	646.97	156.97	525.5	212.8	567.204934	196.218522	415.6616909	144.1252256	M4_p20	0.157142857	0.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.272	67	0	0	NA	2qG3	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr2	119139420	119139420	GT	G	ENSMUST00000094695.11	1	ENSMUSG00000070730	FS	T/X	387	Rmdn3	ENSMUST00000094695.11:c.1159del	ENSMUSP00000092283.5:p.Thr387ArgfsTer46	H-2-Kb	8	37	0	YSQDFQKL	NA	SMM	227.898	NA	NA	117	0.325	263.57	NA	NA	NA	233.55	NA	302.9	NA	227.8977303	NA	293.5891489	M4_p20	-1.228571429	-1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.295	117	0	0	NA	2qE5	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr2	88025662	88025662	TC	T	ENSMUST00000214438.1	5	ENSMUSG00000045150	FS	L/X	313	Olfr1161	ENSMUST00000214438.1:c.943del	ENSMUSP00000150251.1:p.His315IlefsTer31	H-2-Kb	8	29	0	KNFNYKII	NA	NetMHCpan	96.4	NA	NA	48	0.271	348.173	NA	NA	NA	269.04	NA	96.4	NA	427.3069928	NA	475.0507412	M4_p20	-0.057142857	-0.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.256	48	0	0	NA	2qD	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr2	89930111	89930111	TG	T	ENSMUST00000213720.2	5	ENSMUSG00000049149	FS	G/X	101	Olfr1258	ENSMUST00000213720.2:c.304del	ENSMUSP00000149547.1:p.Glu102SerfsTer14	H-2-Kb	8	6	7	MTQVFGSI	MTQVFGEH	NetMHCpan	159.6	20469.1	128.253	497	0.159	254.266	15395.267	60.548	26758.03	313.64	20469.1	159.6	10321.43305	258.0714726	4156.616909	250.4609364	M4_p20	0.871428571	0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.164	497	0	0	NA	2qE1	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.897302872	sgMsh2	cell line
chr2	130275979	130275979	T	C	ENSMUST00000103198.10	1	ENSMUSG00000027405	missense	V/A	125	Nop56	ENSMUST00000103198.10:c.374T>C	ENSMUSP00000099487.4:p.Val125Ala	H-2-Kb	8	11	1	ARLHFHNL	VRLHFHNL	SMM	145.794	38.703	0.265	159	0.245	264.629	47.855	0.181	52.98	382.79	114.7	456.8	38.70258739	145.794117	42.73069928	146.4670721	M4_p20	-0.571428571	-0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.223	159	0	0	NA	2qF1	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr2	158495606	158495606	C	A	ENSMUST00000109485.8	1	ENSMUSG00000027652	missense	L/I	1496	Ralgapb	ENSMUST00000109485.8:c.4486C>A	ENSMUSP00000105111.2:p.Leu1496Ile	H-2-Kb	8	10	2	AIFQEVGL	ALFQEVGL	SMMPMBEC	137.006	468.533	3.42	155	0.265	277.086	992.844	3.583	2896.55	412.65	1197.3	363.3	788.3879904	190.8710225	468.5328006	137.0061303	M4_p20	1.128571429	1.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.281	155	0	0	NA	2qH1	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr2	121439942	121439942	C	T	ENSMUST00000028679.10	1	ENSMUSG00000027246	missense	R/H	313	Ell3	ENSMUST00000028679.10:c.938G>A	ENSMUSP00000028679.4:p.Arg313His	H-2-Kb	8	10	2	YHILHARV	YRILHARV	SMM	415.662	1103.418	2.655	207	0.029	456.117	1942.174	4.258	2780.93	468.89	4986.9	910	1103.417837	415.6616909	1078.30098	443.3431473	M4_p20	0.485714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.031	207	0	0	NA	2qE5	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.169612128	sgMsh2	cell line
chr2	90296129	90296129	A	G	ENSMUST00000214356.2	3	ENSMUSG00000080809	missense	V/A	244	Olfr1273-ps	ENSMUST00000214356.2:c.731T>C	ENSMUSP00000150797.1:p.Val244Ala	H-2-Kb	8	10	2	VAILFFGP	VVILFFGP	SMM	225.289	228.95	1.016	591	0.127	379.677	484.135	1.275	739.32	511.76	1159.7	523.3	228.9496585	225.2890066	228.9496585	247.5939338	M4_p20	1.957142857	2.785714286	FALSE	FALSE	TRUE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.126	591	0	0	NA	2qE1	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.689391231	sgMsh2	cell line
chr2	88958779	88958779	AT	A	ENSMUST00000215781.1	5	ENSMUSG00000048226	FS	H/X	104	Olfr1212	ENSMUST00000215781.1:c.314del	ENSMUSP00000149781.1:p.Phe105SerfsTer7	H-2-Kb	8	7	6	IFAEHSLL	IFAEHFFA	SMM	230.537	3256.417	14.125	524	0.031	413.615	5031.353	12.164	9427.84	554.67	5344.9	432.1	3256.4169	230.5366617	4717.805149	395.1299959	M4_p20	0.671428571	0.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.033	524	0	0	NA	2qE1	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.180554846	sgMsh2	cell line
chr2	150763636	150763636	A	G	ENSMUST00000094467.5	1	ENSMUSG00000033068	missense	Y/C	262	Entpd6	ENSMUST00000094467.5:c.785A>G	ENSMUSP00000092038.5:p.Tyr262Cys	H-2-Kb	8	9	3	KLCSYSYL	KLYSYSYL	SMMPMBEC	164.339	16.51	0.1	54	0.278	346.526	13.055	0.038	7.12	660.83	9.6	482.8	17.85418375	210.2519343	16.50973111	164.3387578	M4_p20	0.842857143	0.842857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.294	54	0	0	NA	2qG3	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr2	90296129	90296129	A	G	ENSMUST00000214356.2	3	ENSMUSG00000080809	missense	V/A	244	Olfr1273-ps	ENSMUST00000214356.2:c.731T>C	ENSMUSP00000150797.1:p.Val244Ala	H-2-Kb	8	11	1	AILFFGPA	VILFFGPA	SMMPMBEC	255.705	74.6	0.292	591	0.127	409.107	103.202	0.252	125.17	696.41	173	512.2	81.23440428	306.013087	74.60020141	255.7054591	M4_p20	1.957142857	1.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.126	591	0	0	NA	2qE1	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.689391231	sgMsh2	cell line
chr2	132240580	132240580	A	G	ENSMUST00000110164.7	2	ENSMUSG00000027341	missense	F/S	90	Tmem230	ENSMUST00000110164.7:c.269T>C	ENSMUSP00000105793.1:p.Phe90Ser	H-2-Kb	9	10	2	VSLPGFYHL	VFLPGFYHL	NetMHC	22.77	187.13	8.218	188	0.207	93.901	246.108	2.621	187.13	22.77	200.4	30	291.8166046	157.8010905	341.3893746	169.9221522	M4_p20	0.557142857	0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.21	188	0	0	NA	2qF2	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr2	90296129	90296129	A	G	ENSMUST00000214356.2	3	ENSMUSG00000080809	missense	V/A	244	Olfr1273-ps	ENSMUST00000214356.2:c.731T>C	ENSMUSP00000150797.1:p.Val244Ala	H-2-Kb	9	10	2	VAILFFGPA	VVILFFGPA	NetMHC	27.49	37.64	1.369	591	0.127	72.942	107.929	1.48	37.64	27.49	98.3	44.2	120.2568988	106.9325688	117.5574075	101.6833861	M4_p20	1.957142857	2.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.126	591	0	0	NA	2qE1	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.689391231	sgMsh2	cell line
chr2	144511505	144511505	A	G	ENSMUST00000081982.11	1	ENSMUSG00000037259	missense	L/P	154	Dzank1	ENSMUST00000081982.11:c.461T>C	ENSMUSP00000080643.5:p.Leu154Pro	H-2-Kb	9	9	3	VNPRRLADL	VNLRRLADL	NetMHC	51.88	26.26	0.506	240	0.292	158.311	62.916	0.397	26.26	51.88	46.9	167.6	99.79527977	171.044849	78.93143527	149.021867	M4_p20	-0.671428571	-0.614285714	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.302	240	0	0	NA	2qG1	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr2	91688761	91688761	A	T	ENSMUST00000076803.11	1	ENSMUSG00000027244	missense	V/D	113	Atg13	ENSMUST00000076803.11:c.338T>A	ENSMUSP00000076081.5:p.Val113Asp	H-2-Kb	9	11	1	DSYTVYNRL	VSYTVYNRL	NetMHC	58.79	3.32	0.056	175	0.177	116.578	10.351	0.089	3.32	58.79	4.4	95.4	16.4478827	137.7558339	16.30234201	160.7866549	M4_p20	-0.471428571	-0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.176	175	0	0	NA	2qE1	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.96295918	sgMsh2	cell line
chr2	88025662	88025662	TC	T	ENSMUST00000214438.1	5	ENSMUSG00000045150	FS	L/X	313	Olfr1161	ENSMUST00000214438.1:c.943del	ENSMUSP00000150251.1:p.His315IlefsTer31	H-2-Kb	9	29	0	KNFNYKIIL	NA	NetMHCpan	40.6	NA	NA	48	0.271	130.694	NA	NA	NA	76.84	NA	40.6	NA	184.5482792	NA	197.3558481	M4_p20	0.985714286	0.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.256	48	0	0	NA	2qD	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr2	111335694	111335694	C	A	ENSMUST00000099618.1	NA	ENSMUSG00000096554	missense	R/M	128	Olfr1282	ENSMUST00000099618.1:c.383G>T	ENSMUSP00000097213.1:p.Arg128Met	H-2-Kb	9	10	2	CMPLHYSSI	CRPLHYSSI	NetMHC	94.4	1410.95	14.947	1352	0.219	136.949	1266.807	9.25	1410.95	94.4	2800.2	169.4	724.6194716	104.4984864	1122.664526	174.2809827	M4_p20	0.085714286	0.185714286	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.234	1352	0	0	NA	2qE3	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr2	91284247	91284247	A	G	ENSMUST00000102594.10	1	ENSMUSG00000040591	missense	F/L	147	1110051M20Rik	ENSMUST00000102594.10:c.439T>C	ENSMUSP00000099654.4:p.Phe147Leu	H-2-Kb	9	8	4	QIQLYYSEF	QIQFYYSEF	SMM	177.873	191.034	1.074	293	0.184	233.567	248.13	1.062	224.46	181.21	352.1	442.3	191.0337056	177.8729877	271.8003427	285.9235978	M4_p20	-0.542857143	-0.3	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.175	293	0	0	NA	2qE1	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.957487821	sgMsh2	cell line
chr2	130275979	130275979	T	C	ENSMUST00000103198.10	1	ENSMUSG00000027405	missense	V/A	125	Nop56	ENSMUST00000103198.10:c.374T>C	ENSMUSP00000099487.4:p.Val125Ala	H-2-Kb	9	10	2	GARLHFHNL	GVRLHFHNL	NetMHC	183.24	193.73	1.057	159	0.245	249.426	289.094	1.159	193.73	183.24	307.1	257.8	271.0878168	241.0515897	323.0353127	279.4151821	M4_p20	-0.571428571	-0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.223	159	0	0	NA	2qF1	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr2	89074615	89074615	T	C	ENSMUST00000215225.2	5	ENSMUSG00000075104	missense	I/V	159	Olfr1219	ENSMUST00000215225.2:c.475A>G	ENSMUSP00000149573.1:p.Ile159Val	H-2-Kb	9	11	1	VIFTLQLPF	IIFTLQLPF	NetMHCpan	123.1	134.9	1.096	769	0.147	159.509	222.786	1.397	234.59	185.57	134.9	123.1	229.67303	155.9947563	215.8986864	163.0234201	M4_p20	1.057142857	2.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.155	769	0	0	NA	2qE1	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.848060641	sgMsh2	cell line
chr2	119139420	119139420	GT	G	ENSMUST00000094695.11	1	ENSMUSG00000070730	FS	T/X	387	Rmdn3	ENSMUST00000094695.11:c.1159del	ENSMUSP00000092283.5:p.Thr387ArgfsTer46	H-2-Kb	9	45	0	DGYIFLSAI	NA	NetMHC	187.49	NA	NA	117	0.325	309.473	NA	NA	NA	187.49	NA	212.4	NA	406.5462879	NA	510.7989549	M4_p20	2.185714286	2.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.295	117	0	0	NA	2qE5	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr2	89074615	89074615	T	C	ENSMUST00000215225.2	5	ENSMUSG00000075104	missense	I/V	159	Olfr1219	ENSMUST00000215225.2:c.475A>G	ENSMUSP00000149573.1:p.Ile159Val	H-2-Kb	9	9	3	IQVIFTLQL	IQIIFTLQL	NetMHCpan	128.8	75.1	0.583	769	0.147	267.149	173.082	0.648	108.89	189.75	75.1	128.8	317.7678825	464.6329446	237.2739171	344.5482116	M4_p20	2.128571429	2.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.155	769	0	0	NA	2qE1	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.848060641	sgMsh2	cell line
chr2	91284247	91284247	A	G	ENSMUST00000102594.10	1	ENSMUSG00000040591	missense	F/L	147	1110051M20Rik	ENSMUST00000102594.10:c.439T>C	ENSMUSP00000099654.4:p.Phe147Leu	H-2-Kb	9	9	3	IQLYYSEFL	IQFYYSEFL	NetMHCpan	192.4	29.6	0.154	293	0.184	382.31	125.453	0.328	51.33	204.72	29.6	192.4	199.5767748	559.8993973	219.4067579	608.4851727	M4_p20	0.5	0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.175	293	0	0	NA	2qE1	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.957487821	sgMsh2	cell line
chr2	91284247	91284247	A	G	ENSMUST00000102594.10	1	ENSMUSG00000040591	missense	F/L	147	1110051M20Rik	ENSMUST00000102594.10:c.439T>C	ENSMUSP00000099654.4:p.Phe147Leu	H-2-Kb	9	3	9	FLFAFQIQL	FLFAFQIQF	NetMHCpan	235.9	1129.7	4.789	293	0.184	317.333	742.822	2.341	735.56	268.86	1129.7	235.9	750.0841699	444.7438999	632.7760017	365.8053055	M4_p20	1.242857143	2.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.175	293	0	0	NA	2qE1	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.957487821	sgMsh2	cell line
chr2	117177703	117177703	A	G	ENSMUST00000028829.12	1	ENSMUSG00000027351	missense	I/M	363	Spred1	ENSMUST00000028829.12:c.1089A>G	ENSMUSP00000028829.6:p.Ile363Met	H-2-Kb	9	10	2	CMYQVSCML	CIYQVSCML	SMM	228.618	511.811	2.239	173	0.283	331.205	563.356	1.701	483.81	295.31	614.9	367.1	511.811453	228.6177783	851.6281337	411.386466	M4_p20	0.971428571	0.971428571	TRUE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.299	173	0	0	NA	2qE5	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr2	111379635	111379635	T	C	ENSMUST00000062407.5	5	ENSMUSG00000108931	missense	F/L	212	Olfr1284	ENSMUST00000062407.5:c.634T>C	ENSMUSP00000052153.4:p.Phe212Leu	H-2-Kb	9	5	7	MTLGTFLLL	MTLGTFFLL	NetMHCpan	246.9	192.4	0.779	447	0.255	312.574	264.729	0.847	258.37	322.38	192.4	246.9	271.0878168	302.7680195	408.5545015	416.1500968	M4_p20	2.414285714	2.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.259	447	0	0	NA	2qE3	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr2	88958779	88958779	AT	A	ENSMUST00000215781.1	5	ENSMUSG00000048226	FS	H/X	104	Olfr1212	ENSMUST00000215781.1:c.314del	ENSMUSP00000149781.1:p.Phe105SerfsTer7	H-2-Kb	9	6	7	QIFAEHSLL	QIFAEHFFA	NetMHCpan	261.4	5440	20.811	524	0.031	305.306	6244.741	20.454	11614.97	331.93	5440	261.4	5598.993973	278.6826939	6890.488306	421.9393213	M4_p20	0.671428571	0.771428571	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.033	524	0	0	NA	2qE1	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.180554846	sgMsh2	cell line
chr2	88025662	88025662	TC	T	ENSMUST00000214438.1	5	ENSMUSG00000045150	FS	L/X	313	Olfr1161	ENSMUST00000214438.1:c.943del	ENSMUSP00000150251.1:p.His315IlefsTer31	H-2-Kb	9	31	0	FNYKIILTL	NA	NetMHCpan	180.6	NA	NA	48	0.271	350.618	NA	NA	NA	458.55	NA	180.6	NA	341.2793414	NA	359.9564831	M4_p20	1.528571429	1.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.256	48	0	0	NA	2qD	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr2	89282603	89282603	T	C	ENSMUST00000213883.1	5	ENSMUSG00000075095	missense	I/V	177	Olfr1229	ENSMUST00000213883.1:c.529A>G	ENSMUSP00000150537.1:p.Ile177Val	H-2-Kb	9	10	2	FVCDLYPLL	FICDLYPLL	SMMPMBEC	295.291	300.781	1.019	698	0.113	447.821	486.141	1.086	590.24	525.72	1151.1	998.5	382.0410236	369.9218633	300.7807237	295.2908568	M4_p20	1.071428571	1.128571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.114	698	0	0	NA	2qE1	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.623734923	sgMsh2	cell line
chr2	127801272	127801272	G	A	ENSMUST00000028858.7	1	ENSMUSG00000027379	missense	L/F	1051	Bub1	ENSMUST00000028858.7:c.3151C>T	ENSMUSP00000028858.7:p.Leu1051Phe	H-2-Kb	9	11	3	VMFSEYKRS	VMLSEYKRS	SMM	58.225	163.347	2.805	179	0.073	370.638	1389.362	3.749	2414.6	609.98	5436.9	989.1	163.3465627	58.22506741	364.1245828	131.2955479	M4_p20	-1.714285714	-0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.083	179	0	0	NA	2qF1	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.454122795	sgMsh2	cell line
chr2	150763636	150763636	A	G	ENSMUST00000094467.5	1	ENSMUSG00000033068	missense	Y/C	262	Entpd6	ENSMUST00000094467.5:c.785A>G	ENSMUSP00000092038.5:p.Tyr262Cys	H-2-Kb	9	11	1	CSYSYLGLG	YSYSYLGLG	SMM	209.464	228.618	1.091	54	0.278	484.335	361.439	0.746	706.65	879.5	472.7	666.5	228.6177783	209.4642929	250.1785091	302.1690645	M4_p20	0.485714286	0.485714286	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.294	54	0	0	NA	2qG3	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr2	127363814	127363814	T	C	ENSMUST00000071902.4	NA	ENSMUSG00000058620	missense	Y/H	84	Adra2b	ENSMUST00000071902.4:c.250T>C	ENSMUSP00000071798.4:p.Tyr84His	H-2-Kb	9	7	5	LGYWHFWRA	LGYWYFWRA	NetMHCpan	87	91.1	1.047	243	0.235	423.076	338.271	0.8	509.07	924.07	91.1	87	416.9749833	520.1277201	259.5673122	326.0243217	M4_p20	-0.885714286	-0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.247	243	0	0	NA	2qF1	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr3	106161214	106161214	GT	G	ENSMUST00000063062.8	1	ENSMUSG00000040809	FS	T/X	92	Chil3	ENSMUST00000063062.8:c.274del	ENSMUSP00000053923.8:p.Thr92LeufsTer68	H-2-Db	9	44	0	DSFVNITLM	NA	SMM	69.442	NA	NA	259	0.147	145.219	NA	NA	NA	198.06	NA	290.4	NA	69.44164496	NA	92.37830727	M4_p20	1.857142857	1.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.157	259	0	0	NA	3qF2.2	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.859003359	sgMsh2	cell line
chr2	180583499	180583499	A	G	ENSMUST00000029085.8	1	ENSMUSG00000027569	missense	T/A	83	Mrgbp	ENSMUST00000029085.8:c.247A>G	ENSMUSP00000029085.8:p.Thr83Ala	H-2-Db	9	10	2	SAMYDMQAL	STMYDMQAL	NetMHCpan	338.9	3104.4	9.16	156	0.179	412.293	3121.081	7.57	4556.07	341.95	3104.4	338.9	3137.762006	482.636319	2975.568825	520.6789256	M4_p20	0.157142857	0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.187	156	0	0	NA	2qH4	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr3	80860236	80860236	AT	A	ENSMUST00000029654.14	1	ENSMUSG00000028020	FS	I/X	226	Glrb	ENSMUST00000029654.14:c.676del	ENSMUSP00000029654.8:p.Ile226LeufsTer37	H-2-Db	9	20	0	RRISNMATV	NA	SMMPMBEC	200.249	NA	NA	154	0.338	384.587	NA	NA	NA	531.15	NA	1363	NA	238.0235894	NA	200.2488359	M4_p20	1.057142857	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.318	154	0	0	NA	3qE3	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr3	106161214	106161214	GT	G	ENSMUST00000063062.8	1	ENSMUSG00000040809	FS	T/X	92	Chil3	ENSMUST00000063062.8:c.274del	ENSMUSP00000053923.8:p.Thr92LeufsTer68	H-2-Kb	8	35	0	VRYSFSQL	NA	NetMHC	5.24	NA	NA	259	0.147	9.857	NA	NA	NA	5.24	NA	29.2	NA	9.879614526	NA	9.83422182	M4_p20	-0.614285714	-0.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.157	259	0	0	NA	3qF2.2	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.859003359	sgMsh2	cell line
chr2	180714861	180714861	A	G	ENSMUST00000078687.5	1	ENSMUSG00000027573	missense	N/S	97	Gid8	ENSMUST00000078687.5:c.290A>G	ENSMUSP00000077753.5:p.Asn97Ser	H-2-Kb	8	11	1	SRYLYFHL	NRYLYFHL	NetMHC	8.14	142.06	17.452	162	0.179	15.146	118.423	7.819	142.06	8.14	235.5	34.2	94.78508415	14.91900983	87.24489012	15.37234066	M4_p20	0.014285714	0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.19	162	0	0	NA	2qH4	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr3	89423528	89423528	G	A	ENSMUST00000094378.9	1	ENSMUSG00000042626	missense	C/Y	196	Shc1	ENSMUST00000094378.9:c.587G>A	ENSMUSP00000091940.3:p.Cys196Tyr	H-2-Kb	8	7	5	ISLVYEAV	ISLVCEAV	NetMHC	10.85	693.28	63.897	180	0.233	33.804	558.823	16.531	693.28	10.85	1167.5	29.7	424.3654321	37.90879676	380.8377582	38.97086091	M4_p20	1.2	1.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.234	180	0	0	NA	3qF1	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr3	105005546	105005546	C	A	ENSMUST00000077548.11	1	ENSMUSG00000062127	missense	A/S	341	Cttnbp2nl	ENSMUST00000077548.11:c.1021G>T	ENSMUSP00000076751.5:p.Ala341Ser	H-2-Kb	8	11	1	SAYSYAKA	AAYSYAKA	NetMHC	11.09	24.13	2.176	130	0.3	44.921	75.024	1.67	24.13	11.09	53.5	32.2	129.0446488	68.82401428	96.54727043	57.64212727	M4_p20	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.296	130	0	0	NA	3qF2.2	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr3	30636316	30636316	C	T	ENSMUST00000029252.7	1	ENSMUSG00000027702	missense	G/R	146	Lrrc34	ENSMUST00000029252.7:c.436G>A	ENSMUSP00000029252.7:p.Gly146Arg	H-2-Kb	8	11	1	RGMLFAAM	GGMLFAAM	NetMHC	13.49	112.2	8.317	135	0.304	45.458	147.45	3.244	112.2	13.49	73.6	20	342.5626424	90.7277206	182.7006111	70.91530907	M4_p20	1.942857143	1.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.29	135	0	0	NA	3qA3	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr3	108413893	108413893	CA	C	ENSMUST00000090558.9	1	ENSMUSG00000068740	FS	A/X	534	Celsr2	ENSMUST00000090558.9:c.1602del	ENSMUSP00000088046.3:p.Gly535ValfsTer46	H-2-Kb	8	17	0	SSIAWQGL	NA	NetMHC	35.86	NA	NA	137	0.263	74.623	NA	NA	NA	35.86	NA	62.8	NA	86.44502416	NA	89.27708467	M4_p20	0.642857143	0.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.291	137	0	0	NA	3qF3	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr3	84595028	84595028	A	G	ENSMUST00000062623.3	NA	ENSMUSG00000047819	missense	I/M	417	Tigd4	ENSMUST00000062623.3:c.1251A>G	ENSMUSP00000052320.3:p.Ile417Met	H-2-Kb	8	10	2	SMEEYAAL	SIEEYAAL	NetMHC	43.16	32.49	0.753	182	0.209	61.627	34.783	0.564	32.49	43.16	236.8	196.3	35.62377999	64.67553055	33.94220093	58.5787365	M4_p20	0.142857143	0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.195	182	0	0	NA	3qF1	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr3	82097612	82097612	G	A	ENSMUST00000193924.5	1	ENSMUSG00000033910	missense	T/I	622	Gucy1a1	ENSMUST00000193924.5:c.1865C>T	ENSMUSP00000142138.1:p.Thr622Ile	H-2-Kb	8	7	5	VSPTIYRL	VSPTTYRL	NetMHCpan	48.4	100.4	2.074	355	0.208	103.528	112.676	1.088	41.11	58.21	100.4	48.4	124.9510759	153.0171117	137.6385219	148.8469706	M4_p20	-0.085714286	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.209	355	0	0	NA	3qE3	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr3	108624645	108624645	A	G	ENSMUST00000051145.14	1	ENSMUSG00000040389	missense	Q/R	449	Wdr47	ENSMUST00000051145.14:c.1346A>G	ENSMUSP00000057482.8:p.Gln449Arg	H-2-Kb	8	11	1	RMYQQMLL	QMYQQMLL	NetMHC	67.4	94.29	1.399	157	0.248	121.812	213.148	1.75	94.29	67.4	182.1	93.4	244.1968177	150.2242346	524.4933667	251.0383085	M4_p20	0.442857143	0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.267	157	0	0	NA	3qF3	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr2	180583499	180583499	A	G	ENSMUST00000029085.8	1	ENSMUSG00000027569	missense	T/A	83	Mrgbp	ENSMUST00000029085.8:c.247A>G	ENSMUSP00000029085.8:p.Thr83Ala	H-2-Kb	8	11	1	AMYDMQAL	TMYDMQAL	NetMHCpan	73.9	56.7	0.767	156	0.179	127.758	106.842	0.836	70.22	74.49	56.7	73.9	143.4630303	181.0256018	185.6692572	236.4503711	M4_p20	0.157142857	0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.187	156	0	0	NA	2qH4	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr3	28794409	28794409	G	A	ENSMUST00000060500.8	1	ENSMUSG00000050192	missense	C/Y	139	Eif5a2	ENSMUST00000060500.8:c.416G>A	ENSMUSP00000050289.7:p.Cys139Tyr	H-2-Kb	8	7	5	VSVMYAMS	VSVMCAMS	SMM	72.734	814.217	11.194	416	0.262	100.979	2855.808	28.281	5114.17	120.91	4897.4	389.8	814.2166892	72.73442335	792.027024	81.04757034	M4_p20	0.985714286	1.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.253	416	0	0	NA	3qA3	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr3	88449737	88449737	A	G	ENSMUST00000029700.11	1	ENSMUSG00000028064	missense	L/P	309	Sema4a	ENSMUST00000029700.11:c.926T>C	ENSMUSP00000029700.5:p.Leu309Pro	H-2-Kb	8	5	7	IIRHAVPL	IIRHAVLL	SMM	169.332	448.477	2.649	99	0.343	247.434	538.144	2.175	1021.35	349.03	569.6	310.9	448.476819	169.3323751	506.6872779	183.9670312	M4_p20	0.714285714	0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.344	99	0	0	NA	3qF1	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr3	106161214	106161214	GT	G	ENSMUST00000063062.8	1	ENSMUSG00000040809	FS	T/X	92	Chil3	ENSMUST00000063062.8:c.274del	ENSMUSP00000053923.8:p.Thr92LeufsTer68	H-2-Kb	8	24	0	RSVPWSLL	NA	NetMHCpan	274.9	NA	NA	259	0.147	394.995	NA	NA	NA	355.74	NA	274.9	NA	449.5106648	NA	434.2501729	M4_p20	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.157	259	0	0	NA	3qF2.2	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.859003359	sgMsh2	cell line
chr3	107311516	107311516	C	CT	ENSMUST00000029502.13	1	ENSMUSG00000027896	FS	L/LX	478	Slc16a4	ENSMUST00000029502.13:c.1440dup	ENSMUSP00000029502.7:p.Val481CysfsTer5	H-2-Kb	8	9	6	VSLFFCTT	VSLFFVPL	NetMHCpan	99	3.7	0.037	145	0.283	150.102	2.995	0.02	3.56	384.31	3.7	99	2.252890066	166.6249377	2.430748352	133.5795574	M4_p20	1.385714286	2.085714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.302	145	0	0	NA	3qF2.3	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr3	90190923	90190923	C	T	ENSMUST00000029548.8	5	ENSMUSG00000027939	missense	S/L	1394	Nup210l	ENSMUST00000029548.8:c.4181C>T	ENSMUSP00000029548.4:p.Ser1394Leu	H-2-Kb	8	8	4	RTLLAFPL	RTLSAFPL	NetMHCpan	184	237.9	1.293	304	0.217	202.884	249.781	1.231	490.66	429.13	237.9	184	235.9065504	193.0812048	261.6616044	212.686537	M4_p20	1.957142857	1.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	304	0	0	NA	3qF1	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr3	38888297	38888297	G	GC	ENSMUST00000061260.7	1	ENSMUSG00000046743	FS	-/X	446-447	Fat4	ENSMUST00000061260.7:c.1343dup	ENSMUSP00000061836.7:p.Thr449TyrfsTer19	H-2-Kb	8	19	0	GSFVCGQL	NA	SMMPMBEC	118.779	NA	NA	98	0.337	332.28	NA	NA	NA	567.48	NA	419.8	NA	244.7597495	NA	118.7790917	M4_p20	1.228571429	1.228571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.315	98	0	0	NA	3qB	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr3	106161214	106161214	GT	G	ENSMUST00000063062.8	1	ENSMUSG00000040809	FS	T/X	92	Chil3	ENSMUST00000063062.8:c.274del	ENSMUSP00000053923.8:p.Thr92LeufsTer68	H-2-Kb	8	54	0	STWTGSTL	NA	NetMHCpan	317	NA	NA	259	0.147	379.995	NA	NA	NA	978.08	NA	317	NA	440.2911945	NA	319.6980594	M4_p20	-0.057142857	-0.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.157	259	0	0	NA	3qF2.2	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.859003359	sgMsh2	cell line
chr3	68927791	68927791	A	G	ENSMUST00000107812.7	5	ENSMUSG00000027778	missense	I/T	439	Ift80	ENSMUST00000107812.7:c.1316T>C	ENSMUSP00000103442.1:p.Ile439Thr	H-2-Kb	8	11	1	TIFLFEAS	IIFLFEAS	SMM	114.483	40.902	0.357	178	0.292	496.639	214.122	0.431	378.83	1363.31	368.3	827.8	40.90157201	114.482736	59.94321055	165.4778997	M4_p20	1.628571429	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.3	178	0	0	NA	3qE1	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr3	89266743	89266743	T	G	ENSMUST00000107462.7	3	ENSMUSG00000042737	missense	L/V	4	Dpm3	ENSMUST00000107462.7:c.10T>G	ENSMUSP00000103086.1:p.Leu4Val	H-2-Kb	8	4	1	VTQWLWGL	LTQWLWGL	SMM	283.622	1434.63	5.058	104	0.212	404.513	1559.675	3.856	6651.54	1488.78	1453.1	408.4	1434.630303	283.6220554	1666.249377	400.6268017	M4_p20	0.171428571	0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.22	104	0	0	NA	3qF1	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr3	82097612	82097612	G	A	ENSMUST00000193924.5	1	ENSMUSG00000033910	missense	T/I	622	Gucy1a1	ENSMUST00000193924.5:c.1865C>T	ENSMUSP00000142138.1:p.Thr622Ile	H-2-Kb	9	7	5	VSPTIYRLL	VSPTTYRLL	NetMHC	15.61	10.54	0.675	355	0.208	98.817	82.779	0.838	10.54	15.61	40.5	25.8	125.0575741	171.8343562	191.0952975	199.6411211	M4_p20	0.571428571	0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.209	355	0	0	NA	3qE3	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr3	84595028	84595028	A	G	ENSMUST00000062623.3	NA	ENSMUSG00000047819	missense	I/M	417	Tigd4	ENSMUST00000062623.3:c.1251A>G	ENSMUSP00000052320.3:p.Ile417Met	H-2-Kb	9	9	3	LSMEEYAAL	LSIEEYAAL	NetMHC	22.2	22.98	1.035	182	0.209	90.051	99.752	1.108	22.98	22.2	45.6	33.8	161.1053638	148.9738357	153.9040328	146.3019114	M4_p20	0.142857143	0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.195	182	0	0	NA	3qF1	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr3	30636316	30636316	C	T	ENSMUST00000029252.7	1	ENSMUSG00000027702	missense	G/R	146	Lrrc34	ENSMUST00000029252.7:c.436G>A	ENSMUSP00000029252.7:p.Gly146Arg	H-2-Kb	9	11	1	RGMLFAAML	GGMLFAAML	NetMHCpan	25	124.8	4.992	135	0.304	300.813	391.686	1.302	142	26.04	124.8	25	641.3720055	575.5857057	682.7315929	656.5230826	M4_p20	2.542857143	2.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.29	135	0	0	NA	3qA3	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr2	180714861	180714861	A	G	ENSMUST00000078687.5	1	ENSMUSG00000027573	missense	N/S	97	Gid8	ENSMUST00000078687.5:c.290A>G	ENSMUSP00000077753.5:p.Asn97Ser	H-2-Kb	9	10	2	TSRYLYFHL	TNRYLYFHL	NetMHC	31.73	61.26	1.931	162	0.179	64.842	81.222	1.253	61.26	31.73	45.4	34.6	101.1835704	95.08455975	115.9444594	104.2917608	M4_p20	0.014285714	0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.19	162	0	0	NA	2qH4	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr2	172454295	172454295	T	C	ENSMUST00000099060.1	1	ENSMUSG00000074569	missense	H/R	203	Gcnt7	ENSMUST00000099060.1:c.608A>G	ENSMUSP00000096659.1:p.His203Arg	H-2-Kb	9	8	4	FQWRYVMNL	FQWHYVMNL	NetMHC	44.73	91.86	2.054	155	0.174	378.766	352.119	0.93	91.86	44.73	121.8	74.8	680.9418088	764.0292757	582.4383998	682.7315929	M4_p20	-0.042857143	-0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	155	0	0	NA	2qH3	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr3	106161214	106161214	GT	G	ENSMUST00000063062.8	1	ENSMUSG00000040809	FS	T/X	92	Chil3	ENSMUST00000063062.8:c.274del	ENSMUSP00000053923.8:p.Thr92LeufsTer68	H-2-Kb	9	34	0	TVRYSFSQL	NA	NetMHC	72.25	NA	NA	259	0.147	200.37	NA	NA	NA	72.25	NA	169.4	NA	250.6744092	NA	231.3396105	M4_p20	-0.614285714	-0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.157	259	0	0	NA	3qF2.2	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.859003359	sgMsh2	cell line
chr2	180583499	180583499	A	G	ENSMUST00000029085.8	1	ENSMUSG00000027569	missense	T/A	83	Mrgbp	ENSMUST00000029085.8:c.247A>G	ENSMUSP00000029085.8:p.Thr83Ala	H-2-Kb	9	4	8	VIWDHLSAM	VIWDHLSTM	NetMHCpan	73.8	57.5	0.779	156	0.179	77.793	86.56	1.113	88.57	75.95	57.5	73.8	84.54929682	79.63610307	91.88613834	85.35913393	M4_p20	-0.128571429	0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.187	156	0	0	NA	2qH4	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr3	68927791	68927791	A	G	ENSMUST00000107812.7	5	ENSMUSG00000027778	missense	I/T	439	Ift80	ENSMUST00000107812.7:c.1316T>C	ENSMUSP00000103442.1:p.Ile439Thr	H-2-Kb	9	11	1	TIFLFEAST	IIFLFEAST	NetMHC	181.4	78.59	0.433	178	0.292	236.705	140.504	0.594	78.59	181.4	219.4	418.7	139.6722084	239.3922023	141.3350901	234.0183969	M4_p20	0.885714286	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.3	178	0	0	NA	3qE1	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr3	80860236	80860236	AT	A	ENSMUST00000029654.14	1	ENSMUSG00000028020	FS	I/X	226	Glrb	ENSMUST00000029654.14:c.676del	ENSMUSP00000029654.8:p.Ile226LeufsTer37	H-2-Kb	9	6	6	VQLEKLLYL	VQLEKIALP	NetMHC	204.77	13999.81	68.368	154	0.338	281.513	8030.813	28.527	13999.81	204.77	16761.3	288.8	1256.348137	274.2268658	2061.816449	309.2074862	M4_p20	0.928571429	0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.318	154	0	0	NA	3qE3	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr3	95008482	95008482	T	C	ENSMUST00000019482.7	1	ENSMUSG00000019338	missense	K/R	993	Zfp687	ENSMUST00000019482.7:c.2978A>G	ENSMUSP00000019482.1:p.Lys993Arg	H-2-Kb	9	8	4	SVKRFPCRL	SVKKFPCRL	NetMHCpan	181.6	255.5	1.407	87	0.356	436.752	462.473	1.059	295.28	204.99	255.5	181.6	629.6656471	668.5132201	679.5947262	729.8775406	M4_p20	-0.771428571	-0.185714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.31	87	0	0	NA	3qF2.1	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr4	45307923	45307923	CT	C	ENSMUST00000044673.8	1	ENSMUSG00000035601	FS	L/X	203	Trmt10b	ENSMUST00000044673.8:c.612del	ENSMUSP00000041052.2:p.Pro205LeufsTer8	H-2-Db	9	9	5	FSLFLWKPL	FSLFPLETL	SMM	212.628	545.281	2.564	374	0.257	281.074	540.89	1.924	345.62	310.63	884.2	463.6	545.2805415	212.6277776	536.5003381	251.518538	M4_p20	1.114285714	1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.245	374	0	0	NA	4qB1	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr3	155137385	155137385	AT	A	ENSMUST00000194376.1	1	ENSMUSG00000028182	FS	N/X	298	Lrriq3	ENSMUST00000194376.1:c.897del	ENSMUSP00000142127.1:p.His300ThrfsTer32	H-2-Db	9	7	7	KLWVNFTEV	NA	SMMPMBEC	272.001	NA	NA	297	0.313	443.324	NA	NA	NA	666.64	NA	596.5	NA	290.1482797	NA	272.0006864	M4_p20	0.371428571	0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.306	297	0	0	NA	3qH4	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr4	112389201	112389201	A	G	ENSMUST00000058605.2	1	ENSMUSG00000049972	missense	V/A	238	Skint9	ENSMUST00000058605.2:c.713T>C	ENSMUSP00000052670.2:p.Val238Ala	H-2-Kb	8	9	3	IMALFPGL	IMVLFPGL	NetMHC	14.94	6.77	0.453	107	0.187	32.007	20.652	0.645	6.77	14.94	11.4	16.4	32.04350395	47.61458462	29.90473787	58.04168341	M4_p20	1.728571429	1.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.197	107	0	0	NA	4qD1	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr4	45307923	45307923	CT	C	ENSMUST00000044673.8	1	ENSMUSG00000035601	FS	L/X	203	Trmt10b	ENSMUST00000044673.8:c.612del	ENSMUSP00000041052.2:p.Pro205LeufsTer8	H-2-Kb	8	10	4	SLFLWKPL	SLFPLETL	NetMHCpan	45.9	278.7	6.072	374	0.257	65.889	861.472	13.075	1564.85	78.53	278.7	45.9	803.0452175	78.47656766	919.8986892	53.30156983	M4_p20	1.114285714	1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.245	374	0	0	NA	4qB1	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr4	120886945	120886945	C	T	ENSMUST00000071093.8	1	ENSMUSG00000032890	missense	P/L	124	Rims3	ENSMUST00000071093.8:c.371C>T	ENSMUSP00000068178.2:p.Pro124Leu	H-2-Kb	8	7	5	TFIFLTRL	TFIFPTRL	NetMHCpan	49.6	106	2.137	117	0.222	194.02	549.467	2.832	531.73	162.75	106	49.6	567.204934	225.2890066	685.0779666	240.8463117	M4_p20	1.785714286	1.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.242	117	0	0	NA	4qD2.2	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr3	124321788	124321788	T	C	ENSMUST00000058994.5	NA	ENSMUSG00000044528	missense	I/T	199	Tram1l1	ENSMUST00000058994.5:c.596T>C	ENSMUSP00000062635.4:p.Ile199Thr	H-2-Kb	8	8	4	LIYTGLHL	LIYIGLHL	NetMHCpan	105.6	142.7	1.351	145	0.207	187.861	224.17	1.193	236.63	184.41	142.7	105.6	277.1660292	260.4593785	211.7093311	191.3110256	M4_p20	0.928571429	0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.23	145	0	0	NA	3qG1	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr3	146584619	146584619	A	C	ENSMUST00000200633.1	1	ENSMUSG00000028185	missense	L/R	199	Dnase2b	ENSMUST00000200633.1:c.596T>G	ENSMUSP00000142872.1:p.Leu199Arg	H-2-Kb	8	5	7	STFHWKRI	STFHWKLI	SMMPMBEC	144.457	341.775	2.366	143	0.245	192.819	354.532	1.839	367.29	243.23	186.2	161.9	499.7352678	223.738128	341.7747702	144.4574685	M4_p20	-0.842857143	-0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.277	143	0	0	NA	3qH2	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr4	20064005	20064005	A	C	ENSMUST00000098242.3	1	ENSMUSG00000073987	missense	K/T	234	Ggh	ENSMUST00000098242.3:c.701A>C	ENSMUSP00000095843.3:p.Lys234Thr	H-2-Kb	8	10	2	FTYPVYAV	FKYPVYAV	SMM	232.135	1272.741	5.483	175	0.137	311.21	3820.621	12.277	5414.14	319.82	5562.8	302.6	1272.740898	232.1346655	2227.101447	387.9180607	M4_p20	0.757142857	0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.15	175	0	0	NA	4qA3	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.820703846	sgMsh2	cell line
chr4	45882738	45882738	A	C	ENSMUST00000107783.7	5	ENSMUSG00000028327	missense	N/T	483	Stra6l	ENSMUST00000107783.7:c.1448A>C	ENSMUSP00000103412.1:p.Asn483Thr	H-2-Kb	8	6	6	FLFFYTVL	FLFFYNVL	SMMPMBEC	55.048	77.4	1.406	155	0.181	72.938	101.5	1.392	438.39	334.69	125.6	88.1	73.91626265	57.7750061	77.39982879	55.04780419	M4_p20	2.2	2.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	155	0	0	NA	4qB1	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr4	45882738	45882738	A	C	ENSMUST00000107783.7	5	ENSMUSG00000028327	missense	N/T	483	Stra6l	ENSMUST00000107783.7:c.1448A>C	ENSMUSP00000103412.1:p.Asn483Thr	H-2-Kb	8	5	7	YFLFFYTV	YFLFFYNV	SMM	172.084	57.908	0.337	155	0.181	411.14	144.594	0.352	205.87	584.19	564.6	1069.9	57.90819124	172.0838049	83.31822323	238.0893668	M4_p20	2.057142857	2.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	155	0	0	NA	4qB1	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr4	53083890	53083890	A	G	ENSMUST00000030010.3	1	ENSMUSG00000015243	missense	W/R	648	Abca1	ENSMUST00000030010.3:c.1942T>C	ENSMUSP00000030010.3:p.Trp648Arg	H-2-Kb	8	11	1	RIYSVAVI	WIYSVAVI	SMM	334.765	451.586	1.349	104	0.173	400.859	795.858	1.985	1140.13	619.27	1407.1	446.3	451.5855118	334.7649647	409.0157201	355.4184757	M4_p20	2.442857143	2.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.185	104	0	0	NA	4qB2	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr4	41093679	41093679	A	G	ENSMUST00000055327.7	1	ENSMUSG00000028435	missense	V/A	245	Aqp3	ENSMUST00000055327.7:c.734T>C	ENSMUSP00000055110.7:p.Val245Ala	H-2-Kb	8	6	6	RHWWWAPI	RHWWWVPI	NetMHCpan	222.3	379.8	1.709	55	0.236	438.129	1265.319	2.888	2567.84	683.29	379.8	222.3	1512.655393	523.2870654	1017.981768	352.9717922	M4_p20	-0.171428571	-0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.22	55	0	0	NA	4qA5	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr4	112389201	112389201	A	G	ENSMUST00000058605.2	1	ENSMUSG00000049972	missense	V/A	238	Skint9	ENSMUST00000058605.2:c.713T>C	ENSMUSP00000052670.2:p.Val238Ala	H-2-Kb	9	8	4	VIMALFPGL	VIMVLFPGL	NetMHC	16.97	12.72	0.75	107	0.187	54.686	37.85	0.692	12.72	16.97	18.8	19.4	56.89970306	89.97254391	75.72686885	103.8125837	M4_p20	1.728571429	2.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.197	107	0	0	NA	4qD1	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr4	120886945	120886945	C	T	ENSMUST00000071093.8	1	ENSMUSG00000032890	missense	P/L	124	Rims3	ENSMUST00000071093.8:c.371C>T	ENSMUSP00000068178.2:p.Pro124Leu	H-2-Kb	9	6	6	GTFIFLTRL	GTFIFPTRL	NetMHCpan	28.1	39.6	1.409	117	0.222	60.436	144.364	2.389	86.31	36.1	39.6	28.1	215.332707	91.43448014	202.4184057	84.77152578	M4_p20	1.785714286	1.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.242	117	0	0	NA	4qD2.2	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr3	148833898	148833898	T	C	ENSMUST00000197567.4	2	ENSMUSG00000028184	missense	I/M	995	Adgrl2	ENSMUST00000197567.4:c.2985A>G	ENSMUSP00000143626.1:p.Ile995Met	H-2-Kb	9	10	2	FMWSFIGPV	FIWSFIGPV	NetMHC	99.96	120.28	1.203	164	0.28	128.505	275.439	2.143	120.28	99.96	370.4	270.9	250.097874	111.7146168	300.7807237	145.2947761	M4_p20	1.114285714	1.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.287	164	0	0	NA	3qH3	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr4	104679526	104679526	GA	G	ENSMUST00000106830.8	1	ENSMUSG00000028519	FS	E/X	171	Dab1	ENSMUST00000106830.8:c.518del	ENSMUSP00000102443.2:p.Lys173ArgfsTer68	H-2-Kb	9	57	0	RTFTRFPPA	NA	NetMHCpan	78.3	NA	NA	80	0.35	222.469	NA	NA	NA	135.73	NA	78.3	NA	419.8653158	NA	309.2074862	M4_p20	-0.142857143	-0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.332	80	0	0	NA	4qC6	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr3	157312902	157312902	C	T	ENSMUST00000074015.10	1	ENSMUSG00000040037	missense	L/F	347	Negr1	ENSMUST00000074015.10:c.1039C>T	ENSMUSP00000073664.4:p.Leu347Phe	H-2-Kb	9	12	9	IFYLKNAIF	IFYLKNAIL	SMM	146.592	86.918	0.593	113	0.327	161.23	88.179	0.547	89.44	172.75	131.7	353.4	86.91805512	146.5919088	86.54659777	149.7097207	M4_p20	0.6	0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.333	113	0	0	NA	3qH4	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr4	45882738	45882738	A	C	ENSMUST00000107783.7	5	ENSMUSG00000028327	missense	N/T	483	Stra6l	ENSMUST00000107783.7:c.1448A>C	ENSMUSP00000103412.1:p.Asn483Thr	H-2-Kb	9	5	7	YFLFFYTVL	YFLFFYNVL	SMMPMBEC	92.95	97.331	1.047	155	0.181	140.732	143.325	1.018	189.32	187.9	406.9	303.5	85.92311238	93.56426278	97.33073433	92.95012968	M4_p20	2.2	2.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	155	0	0	NA	4qB1	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr4	45307923	45307923	CT	C	ENSMUST00000044673.8	1	ENSMUSG00000035601	FS	L/X	203	Trmt10b	ENSMUST00000044673.8:c.612del	ENSMUSP00000041052.2:p.Pro205LeufsTer8	H-2-Kb	9	9	5	FSLFLWKPL	FSLFPLETL	NetMHCpan	127.2	1483.2	11.66	374	0.257	215.539	984.497	4.568	761.94	209.13	1483.2	127.2	889.4263671	253.577082	1079.567993	221.9473684	M4_p20	1.114285714	1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.245	374	0	0	NA	4qB1	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr3	123552522	123552522	G	A	ENSMUST00000154668.7	5	ENSMUSG00000027977	missense	A/V	701	Ndst3	ENSMUST00000154668.7:c.2102C>T	ENSMUSP00000118207.1:p.Ala701Val	H-2-Kb	9	10	2	RVYSWYQHQ	RAYSWYQHQ	SMM	120.812	107.426	0.889	212	0.245	188.882	155.236	0.822	170.11	215.49	1963.7	2840.5	107.4261472	120.8119794	140.3621462	162.2743955	M4_p20	-2.071428571	-0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.252	212	0	0	NA	3qG1	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr3	155137385	155137385	AT	A	ENSMUST00000194376.1	1	ENSMUSG00000028182	FS	N/X	298	Lrriq3	ENSMUST00000194376.1:c.897del	ENSMUSP00000142127.1:p.His300ThrfsTer32	H-2-Kb	9	21	0	LTFHQYKGI	NA	NetMHCpan	249.3	NA	NA	297	0.313	334.616	NA	NA	NA	317.47	NA	249.3	NA	377.6678362	NA	351.7628732	M4_p20	-0.714285714	-0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.306	297	0	0	NA	3qH4	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr4	45882738	45882738	A	C	ENSMUST00000107783.7	5	ENSMUSG00000028327	missense	N/T	483	Stra6l	ENSMUST00000107783.7:c.1448A>C	ENSMUSP00000103412.1:p.Asn483Thr	H-2-Kb	9	4	8	NYFLFFYTV	NYFLFFYNV	SMM	194.585	162.971	0.838	155	0.181	271.375	172.885	0.637	139.12	325.02	182.8	260.1	162.970876	194.5852873	236.1837425	282.6506575	M4_p20	2.057142857	2.057142857	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	155	0	0	NA	4qB1	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr4	104679526	104679526	GA	G	ENSMUST00000106830.8	1	ENSMUSG00000028519	FS	E/X	171	Dab1	ENSMUST00000106830.8:c.518del	ENSMUSP00000102443.2:p.Lys173ArgfsTer68	H-2-Kb	9	24	0	CTRPFWKRM	NA	NetMHCpan	330.5	NA	NA	80	0.35	394.527	NA	NA	NA	367.25	NA	330.5	NA	421.8033261	NA	629.8686601	M4_p20	-1.528571429	-0.9	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.332	80	0	0	NA	4qC6	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr3	155101249	155101249	GC	G	ENSMUST00000029833.12	1	ENSMUSG00000028182	FS	S/X	178	Lrriq3	ENSMUST00000029833.12:c.537del	ENSMUSP00000029833.7:p.Ser180ValfsTer10	H-2-Kb	9	10	4	FSPVYSLTF	NA	NetMHC	390.17	NA	NA	152	0.27	450.538	NA	NA	NA	390.17	NA	405.5	NA	495.5756965	NA	783.8807509	M4_p20	0.914285714	0.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.275	152	0	0	NA	3qH4	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr4	112389201	112389201	A	G	ENSMUST00000058605.2	1	ENSMUSG00000049972	missense	V/A	238	Skint9	ENSMUST00000058605.2:c.713T>C	ENSMUSP00000052670.2:p.Val238Ala	H-2-Kb	9	9	3	IMALFPGLI	IMVLFPGLI	SMM	244.968	220.348	0.899	107	0.187	300.594	230.239	0.766	240.13	437.23	191.5	266.8	220.3484501	244.968363	259.5673122	334.3874735	M4_p20	2.1	2.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.197	107	0	0	NA	4qD1	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr4	45882738	45882738	A	C	ENSMUST00000107783.7	5	ENSMUSG00000028327	missense	N/T	483	Stra6l	ENSMUST00000107783.7:c.1448A>C	ENSMUSP00000103412.1:p.Asn483Thr	H-2-Kb	9	6	6	FLFFYTVLL	FLFFYNVLL	SMMPMBEC	233.48	291.911	1.25	155	0.181	369.011	501.973	1.36	662.92	466.31	603.9	487.9	400.0460623	271.7127388	291.9106903	233.4801695	M4_p20	2.2	2.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	155	0	0	NA	4qB1	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr3	148833898	148833898	T	C	ENSMUST00000197567.4	2	ENSMUSG00000028184	missense	I/M	995	Adgrl2	ENSMUST00000197567.4:c.2985A>G	ENSMUSP00000143626.1:p.Ile995Met	H-2-Kb	9	7	5	DNYFMWSFI	DNYFIWSFI	SMM	304.166	798.197	2.624	164	0.28	448.263	882.383	1.968	1757.72	638.48	893.3	522.2	798.1968324	304.1655332	871.4651012	374.3260056	M4_p20	1.285714286	1.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.287	164	0	0	NA	3qH3	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr4	55011581	55011581	G	GT	ENSMUST00000098070.9	5	ENSMUSG00000060206	FS	-/X	1182-1183	Zfp462	ENSMUST00000098070.9:c.3553dup	ENSMUSP00000095677.3:p.Cys1185LeufsTer5	H-2-Kb	9	9	6	TEMFFLPAL	TEMFFCQHC	NetMHCpan	327.1	8762.2	26.788	93	0.204	361.978	7060.762	19.506	8886.24	652.34	8762.2	327.1	5359.323836	363.1700284	3230.353127	360.7862685	M4_p20	2.185714286	2.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.211	93	0	0	NA	4qB2	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr4	45882738	45882738	A	C	ENSMUST00000107783.7	5	ENSMUSG00000028327	missense	N/T	483	Stra6l	ENSMUST00000107783.7:c.1448A>C	ENSMUSP00000103412.1:p.Asn483Thr	H-2-Kb	9	3	9	FNYFLFFYT	FNYFLFFYN	SMM	179.933	335.05	1.862	155	0.181	469.539	1698.875	3.618	3062.7	745.77	4667.3	1139.7	335.0502914	179.9326599	251.3332806	193.3080768	M4_p20	1.271428571	1.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	155	0	0	NA	4qB1	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr3	155137385	155137385	AT	A	ENSMUST00000194376.1	1	ENSMUSG00000028182	FS	N/X	298	Lrriq3	ENSMUST00000194376.1:c.897del	ENSMUSP00000142127.1:p.His300ThrfsTer32	H-2-Kb	9	10	4	VNFTEVGWM	NA	SMMPMBEC	346.937	NA	NA	297	0.313	357.03	NA	NA	NA	962.72	NA	361.6	NA	352.4601324	NA	346.9365057	M4_p20	0.485714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.306	297	0	0	NA	3qH4	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr4	136554214	136554214	T	A	ENSMUST00000105847.7	5	ENSMUSG00000036940	missense	K/M	682	Kdm1a	ENSMUST00000105847.7:c.2045A>T	ENSMUSP00000101473.1:p.Lys682Met	H-2-Db	9	6	6	FGNLNMVVL	FGNLNKVVL	NetMHC	15.68	50.61	3.228	148	0.27	76.126	173.018	2.273	50.61	15.68	144.4	54.4	281.5917975	138.8736979	201.6368945	97.8520661	M4_p20	1.557142857	1.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.279	148	0	0	NA	4qD3	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr5	34848948	34848948	T	A	ENSMUST00000080036.2	1	ENSMUSG00000029104	missense	H/Q	1400	Htt	ENSMUST00000080036.2:c.4200T>A	ENSMUSP00000078945.2:p.His1400Gln	H-2-Db	9	8	4	NAIQNHIRL	NAIHNHIRL	NetMHCpan	42.5	130.5	3.071	231	0.264	128.892	250.646	1.945	219.7	50.95	130.5	42.5	281.5917975	206.8330804	333.8643134	252.6794949	M4_p20	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.276	231	0	0	NA	5qB2	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr4	155268251	155268251	T	G	ENSMUST00000030922.14	1	ENSMUSG00000029053	missense	K/T	473	Prkcz	ENSMUST00000030922.14:c.1418A>C	ENSMUSP00000030922.7:p.Lys473Thr	H-2-Db	9	5	7	FQVILETPI	FQVILEKPI	NetMHC	96.91	1744.74	18.004	184	0.223	220.135	1380.05	6.269	1744.74	96.91	2345.3	278.3	1015.359882	224.7087583	992.1332393	215.5609059	M4_p20	1.6	1.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.215	184	0	0	NA	4qE2	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr5	63806698	63806698	A	T	ENSMUST00000159584.2	1	ENSMUSG00000090061	missense	K/N	1208	Nwd2	ENSMUST00000159584.2:c.3624A>T	ENSMUSP00000124712.1:p.Lys1208Asn	H-2-Db	9	7	5	ILICNALSI	ILICKALSI	NetMHCpan	141.1	7481.9	53.026	295	0.292	238.859	9795.44	41.009	18580.86	208.18	7481.9	141.1	8762.337965	269.537999	10828.54237	322.5299134	M4_p20	1.828571429	2.485714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.309	295	0	0	NA	5qC3.1	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr5	57721359	57721359	T	C	ENSMUST00000191837.5	1	ENSMUSG00000029108	missense	L/S	752	Pcdh7	ENSMUST00000191837.5:c.2255T>C	ENSMUSP00000142319.1:p.Leu752Ser	H-2-Kb	8	5	7	RNISYTSL	RNISYTLL	NetMHC	17.31	17.09	0.987	295	0.217	37.571	44.968	1.197	17.09	17.31	18.2	19.2	71.73646964	55.94225905	78.83879904	59.94321055	M4_p20	0.171428571	0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.221	295	0	0	NA	5qC1	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr5	20886561	20886561	A	G	ENSMUST00000115259.2	1	ENSMUSG00000045435	missense	Y/C	108	Tmem60	ENSMUST00000115259.2:c.323A>G	ENSMUSP00000110914.2:p.Tyr108Cys	H-2-Kb	8	9	3	LSCVFIPL	LSYVFIPL	SMMPMBEC	18.739	1.883	0.1	265	0.219	26.189	2.268	0.087	2.35	26.63	3.4	62.9	2.186452264	25.74779247	1.882521739	18.73872337	M4_p20	2.2	2.2	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.215	265	0	0	NA	5qA3	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr4	155966486	155966486	T	C	ENSMUST00000024338.4	1	ENSMUSG00000023571	missense	M/T	304	C1qtnf12	ENSMUST00000024338.4:c.911T>C	ENSMUSP00000024338.4:p.Met304Thr	H-2-Kb	8	12	6	SSFSGTLL	SSFSGMLL	NetMHCpan	66.9	50.3	0.752	274	0.252	86.988	70.723	0.813	34.09	71	50.3	66.9	95.22259222	121.8260042	91.14650073	102.9769442	M4_p20	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.257	274	0	0	NA	4qE2	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr4	139640665	139640665	A	G	ENSMUST00000039818.9	1	ENSMUSG00000028737	missense	T/A	306	Aldh4a1	ENSMUST00000039818.9:c.916A>G	ENSMUSP00000043821.9:p.Thr306Ala	H-2-Kb	8	8	4	RFRAFPRL	RFRTFPRL	SMM	54.293	53.179	0.979	63	0.254	87.052	74.246	0.853	78.71	97.59	160.4	151.2	53.17897962	54.29252	69.78145169	76.51384027	M4_p20	0.085714286	0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.275	63	0	0	NA	4qD3	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr4	143656547	143656547	C	T	ENSMUST00000105771.1	5	ENSMUSG00000078513	missense	G/D	34	Gm13088	ENSMUST00000105771.1:c.101G>A	ENSMUSP00000101397.1:p.Gly34Asp	H-2-Kb	8	8	4	FIFDYTKI	FIFGYTKI	NetMHCpan	90.2	96	1.064	311	0.232	147.422	187.893	1.275	189.26	136.45	96	90.2	217.6406428	171.2931516	186.5262676	158.3944645	M4_p20	0.342857143	0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.238	311	0	0	NA	4qE1	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr5	86538011	86538011	T	C	ENSMUST00000116553.8	1	ENSMUSG00000048764	missense	M/V	166	Tmprss11f	ENSMUST00000116553.8:c.496A>G	ENSMUSP00000112252.2:p.Met166Val	H-2-Kb	8	9	3	ISVPSFSL	ISMPSFSL	NetMHCpan	102.9	36.1	0.351	198	0.222	207.483	135.317	0.652	55.98	137.8	36.1	102.9	214.6545013	277.1660292	219.1492557	335.5366776	M4_p20	0.971428571	1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.233	198	0	0	NA	5qE1	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr5	34905586	34905586	A	G	ENSMUST00000080036.2	1	ENSMUSG00000029104	missense	H/R	2854	Htt	ENSMUST00000080036.2:c.8561A>G	ENSMUSP00000078945.2:p.His2854Arg	H-2-Kb	8	7	5	SIIYRCAL	SIIYHCAL	NetMHC	150.5	60.11	0.399	98	0.204	416.858	85.686	0.206	60.11	150.5	82.3	253.3	89.07175307	580.4168341	119.0529058	624.7985313	M4_p20	1.614285714	1.614285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.209	98	0	0	NA	5qB2	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr4	155069021	155069021	T	G	ENSMUST00000103180.3	1	ENSMUSG00000029047	missense	I/M	182	Pex10	ENSMUST00000103180.3:c.546T>G	ENSMUSP00000099469.3:p.Ile182Met	H-2-Kb	8	11	1	MHGTFYHL	IHGTFYHL	SMMPMBEC	155.503	71.571	0.46	147	0.19	235.779	80.872	0.343	80.51	309.1	169.9	352	81.23440428	162.4575876	71.57148034	155.5034397	M4_p20	-0.314285714	-0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.209	147	0	0	NA	4qE2	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr5	34848948	34848948	T	A	ENSMUST00000080036.2	1	ENSMUSG00000029104	missense	H/Q	1400	Htt	ENSMUST00000080036.2:c.4200T>A	ENSMUSP00000078945.2:p.His1400Gln	H-2-Kb	8	9	3	AIQNHIRL	AIHNHIRL	SMM	233.206	203.582	0.873	231	0.264	335.761	210.611	0.627	187.86	352.56	450.7	1017.2	203.5822922	233.2061504	217.6406428	318.9627742	M4_p20	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.276	231	0	0	NA	5qB2	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr4	143811579	143811579	A	G	ENSMUST00000075045.3	1	ENSMUSG00000059218	missense	I/T	274	Gm13084	ENSMUST00000075045.3:c.821T>C	ENSMUSP00000074557.3:p.Ile274Thr	H-2-Kb	8	10	2	VTTVISHL	VITVISHL	NetMHCpan	278.2	250	0.899	138	0.326	416.654	372.928	0.895	297.38	403.04	250	278.2	516.1072977	516.1072977	448.476819	430.2689433	M4_p20	1.014285714	1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.326	138	0	0	NA	4qE1	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr5	3673162	3673162	T	C	ENSMUST00000014673.8	1	ENSMUSG00000014529	missense	I/T	231	Tmbim7	ENSMUST00000014673.8:c.692T>C	ENSMUSP00000014673.2:p.Ile231Thr	H-2-Kb	8	7	5	LIYGTIAL	LIYGIIAL	SMMPMBEC	338.641	366.218	1.081	295	0.319	379.899	400.735	1.055	501.32	404.38	344.3	444	435.2512229	355.4184757	366.2182643	338.6413603	M4_p20	1.742857143	1.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.331	295	0	0	NA	5qA1	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr5	3673162	3673162	T	C	ENSMUST00000014673.8	1	ENSMUSG00000014529	missense	I/T	231	Tmbim7	ENSMUST00000014673.8:c.692T>C	ENSMUSP00000014673.2:p.Ile231Thr	H-2-Kb	8	5	7	VLLIYGTI	VLLIYGII	NetMHCpan	142	579.7	4.082	295	0.319	310.354	756.542	2.438	1677.7	445.42	579.7	142	772.2181412	337.0854446	740.8665723	283.6220554	M4_p20	2.028571429	2.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.331	295	0	0	NA	5qA1	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr5	34905586	34905586	A	G	ENSMUST00000080036.2	1	ENSMUSG00000029104	missense	H/R	2854	Htt	ENSMUST00000080036.2:c.8561A>G	ENSMUSP00000078945.2:p.His2854Arg	H-2-Kb	8	8	4	IIYRCALR	IIYHCALR	SMM	145.459	271.481	1.866	98	0.204	346.557	1048.106	3.024	1769.82	509.57	6012.9	4831.1	271.4813499	145.4587999	326.3923717	183.5439188	M4_p20	0.328571429	1.614285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.209	98	0	0	NA	5qB2	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr5	23500293	23500293	A	T	ENSMUST00000115128.7	5	ENSMUSG00000029004	missense	S/C	1274	Kmt2e	ENSMUST00000115128.7:c.3820A>T	ENSMUSP00000110781.1:p.Ser1274Cys	H-2-Kb	8	10	2	RCYQRALL	RSYQRALL	SMMPMBEC	333.995	39.513	0.118	337	0.202	489.089	34.406	0.07	10.3	546.9	29.3	485.3	41.56616909	492.8786429	39.51299959	333.9950266	M4_p20	0.371428571	0.371428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.201	337	0	0	NA	5qA3	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr4	155069021	155069021	T	G	ENSMUST00000103180.3	1	ENSMUSG00000029047	missense	I/M	182	Pex10	ENSMUST00000103180.3:c.546T>G	ENSMUSP00000099469.3:p.Ile182Met	H-2-Kb	8	6	6	VAWFYMHG	VAWFYIHG	SMM	88.052	124.377	1.413	147	0.19	255.688	481.612	1.884	1556.42	599.87	818.1	399.5	124.3769779	88.05215715	145.1242539	111.8767908	M4_p20	0.1	0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.209	147	0	0	NA	4qE2	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr4	154291298	154291298	G	T	ENSMUST00000030898.11	1	ENSMUSG00000029032	missense	P/T	80	Arhgef16	ENSMUST00000030898.11:c.238C>A	ENSMUSP00000030898.5:p.Pro80Thr	H-2-Kb	8	7	5	STQSTAAL	STQSPAAL	SMM	262.265	270.234	1.03	26	0.115	463.128	647.507	1.398	891.61	618.83	2628.9	1826.7	270.2340064	262.2647967	403.403814	307.4255792	M4_p20	0.242857143	0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.209	26	0	0	NA	4qE2	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr4	144376938	144376938	T	G	ENSMUST00000121109.1	5	ENSMUSG00000073721	missense	E/A	206	Pramef20	ENSMUST00000121109.1:c.617A>C	ENSMUSP00000112488.1:p.Glu206Ala	H-2-Kb	9	5	7	VNLDYVATL	VNLDYVETL	NetMHC	10.74	64.15	5.973	257	0.187	46.953	127.818	2.722	64.15	10.74	72.3	12.2	208.9825384	90.8050496	183.3369491	81.70525693	M4_p20	1.157142857	1.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.215	257	0	0	NA	4qE1	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr4	135969256	135969256	A	G	ENSMUST00000067567.4	1	ENSMUSG00000028670	missense	M/T	178	Lypla2	ENSMUST00000067567.4:c.533T>C	ENSMUSP00000064204.4:p.Met178Thr	H-2-Kb	9	11	1	TVPVRFGAL	MVPVRFGAL	NetMHC	20.89	17.55	0.84	86	0.233	97.966	98.173	1.002	17.55	20.89	45.3	52.3	151.0462682	148.6312054	169.531342	143.6316005	M4_p20	0.871428571	0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.236	86	0	0	NA	4qD3	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr4	143895385	143895385	T	C	ENSMUST00000105767.1	5	ENSMUSG00000078512	missense	I/V	467	Pramef6	ENSMUST00000105767.1:c.1399A>G	ENSMUSP00000101393.1:p.Ile467Val	H-2-Kb	9	13	2	CVYSFVGNI	CIYSFVGNI	NetMHC	23.45	22.06	0.941	381	0.205	90.759	96.799	1.067	22.06	23.45	42.9	35.6	150.6988715	145.9183802	252.4933823	247.8848587	M4_p20	0.785714286	1.6	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.215	381	0	0	NA	4qE1	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr4	124942369	124942369	T	C	ENSMUST00000094769.12	1	ENSMUSG00000044730	missense	Y/H	158	9930104L06Rik	ENSMUST00000094769.12:c.472T>C	ENSMUSP00000154851.1:p.Tyr158His	H-2-Kb	9	4	8	SSYLKRKHL	SSYLKRKYL	NetMHC	33.01	28.82	0.873	114	0.254	69.015	66.097	0.958	28.82	33.01	64.1	72.7	68.09418088	65.32960014	84.382036	77.13473645	M4_p20	-1.314285714	-1.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.274	114	0	0	NA	4qD2.2	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr5	52848016	52848016	A	G	ENSMUST00000031072.13	1	ENSMUSG00000029176	missense	Q/R	301	Anapc4	ENSMUST00000031072.13:c.902A>G	ENSMUSP00000031072.7:p.Gln301Arg	H-2-Kb	9	9	3	SVRDEFMHL	SVQDEFMHL	NetMHCpan	107.4	185.5	1.727	67	0.164	228.321	411.963	1.804	155.92	116.93	185.5	107.4	638.4251688	339.7113053	843.82036	474.5150595	M4_p20	-0.885714286	-0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.204	67	0	0	NA	5qC1	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr4	155069021	155069021	T	G	ENSMUST00000103180.3	1	ENSMUSG00000029047	missense	I/M	182	Pex10	ENSMUST00000103180.3:c.546T>G	ENSMUSP00000099469.3:p.Ile182Met	H-2-Kb	9	10	2	YMHGTFYHL	YIHGTFYHL	NetMHC	159.62	219.23	1.373	147	0.19	188.296	355.71	1.889	219.23	159.62	277.8	182.9	433.6206938	193.6912491	687.4640623	332.0855664	M4_p20	-0.314285714	-0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.209	147	0	0	NA	4qE2	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr4	155069021	155069021	T	G	ENSMUST00000103180.3	1	ENSMUSG00000029047	missense	I/M	182	Pex10	ENSMUST00000103180.3:c.546T>G	ENSMUSP00000099469.3:p.Ile182Met	H-2-Kb	9	7	5	AWFYMHGTF	AWFYIHGTF	SMM	130.05	341.279	2.624	147	0.19	193.94	435.221	2.244	455.25	209.54	926.2	545.8	341.2793414	130.0498932	415.1929781	178.3405083	M4_p20	0.271428571	0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.209	147	0	0	NA	4qE2	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr4	143895385	143895385	T	C	ENSMUST00000105767.1	5	ENSMUSG00000078512	missense	I/V	467	Pramef6	ENSMUST00000105767.1:c.1399A>G	ENSMUSP00000101393.1:p.Ile467Val	H-2-Kb	9	10	5	RNFCVYSFV	RNFCIYSFV	NetMHCpan	85.7	73	0.852	381	0.205	357.494	308.946	0.864	234.97	248.06	73	85.7	382.9217191	472.1826226	388.3738676	466.9280884	M4_p20	2.057142857	2.057142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.215	381	0	0	NA	4qE1	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr5	3673162	3673162	T	C	ENSMUST00000014673.8	1	ENSMUSG00000014529	missense	I/T	231	Tmbim7	ENSMUST00000014673.8:c.692T>C	ENSMUSP00000014673.2:p.Ile231Thr	H-2-Kb	9	7	5	LIYGTIALV	LIYGIIALV	NetMHC	255.57	661.63	2.589	295	0.319	399.072	568.543	1.425	661.63	255.57	1069.9	902.4	475.4556362	346.02701	472.3348608	452.1161284	M4_p20	1.7	1.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.331	295	0	0	NA	5qA1	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr4	143656547	143656547	C	T	ENSMUST00000105771.1	5	ENSMUSG00000078513	missense	G/D	34	Gm13088	ENSMUST00000105771.1:c.101G>A	ENSMUSP00000101397.1:p.Gly34Asp	H-2-Kb	9	8	4	FIFDYTKIL	FIFGYTKIL	NetMHCpan	228.1	295.6	1.296	311	0.232	278.71	290.105	1.041	422.83	317.65	295.6	228.1	243.8428356	260.0818226	284.6098982	297.3377153	M4_p20	0.242857143	0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.238	311	0	0	NA	4qE1	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr4	139640665	139640665	A	G	ENSMUST00000039818.9	1	ENSMUSG00000028737	missense	T/A	306	Aldh4a1	ENSMUST00000039818.9:c.916A>G	ENSMUSP00000043821.9:p.Thr306Ala	H-2-Kb	9	4	8	QNLDRFRAF	QNLDRFRTF	SMM	226.001	239.944	1.062	63	0.254	312.457	354.948	1.136	385.37	323.44	1098.6	1301.5	239.9440583	226.0008122	324.526376	301.4740949	M4_p20	-0.185714286	-0.185714286	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.275	63	0	0	NA	4qD3	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr5	3673162	3673162	T	C	ENSMUST00000014673.8	1	ENSMUSG00000014529	missense	I/T	231	Tmbim7	ENSMUST00000014673.8:c.692T>C	ENSMUSP00000014673.2:p.Ile231Thr	H-2-Kb	9	4	8	SVLLIYGTI	SVLLIYGII	NetMHCpan	276.2	1014.9	3.675	295	0.319	446.055	804.767	1.804	1087.34	388.32	1014.9	276.2	565.0800826	505.9527957	594.6343592	503.7905305	M4_p20	2.028571429	2.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.331	295	0	0	NA	5qA1	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr4	155069021	155069021	T	G	ENSMUST00000103180.3	1	ENSMUSG00000029047	missense	I/M	182	Pex10	ENSMUST00000103180.3:c.546T>G	ENSMUSP00000099469.3:p.Ile182Met	H-2-Kb	9	6	6	VAWFYMHGT	VAWFYIHGT	SMMPMBEC	296.654	386.589	1.303	147	0.19	366.731	465.832	1.27	684.88	393.67	468.1	352.3	463.5643185	381.1623536	386.5894518	296.6538575	M4_p20	-0.257142857	0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.209	147	0	0	NA	4qE2	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr5	57721359	57721359	T	C	ENSMUST00000191837.5	1	ENSMUSG00000029108	missense	L/S	752	Pcdh7	ENSMUST00000191837.5:c.2255T>C	ENSMUSP00000142319.1:p.Leu752Ser	H-2-Kb	9	7	5	ISYTSLPPS	ISYTLLPPS	SMM	151.743	109.172	0.719	295	0.217	424.609	273.635	0.644	451.89	632.75	392.3	624.7	109.1716816	151.7434661	154.9708446	224.5173978	M4_p20	-0.428571429	0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.221	295	0	0	NA	5qC1	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr5	31040436	31040436	T	C	ENSMUST00000114668.6	1	ENSMUSG00000006641	missense	I/V	310	Slc5a6	ENSMUST00000114668.6:c.928A>G	ENSMUSP00000110316.1:p.Ile310Val	H-2-Kb	9	11	1	VGLVMFAYY	IGLVMFAYY	SMM	176.242	259.484	1.472	125	0.232	453.049	578.617	1.277	846.6	671.54	1237.9	1273.8	259.483651	176.2422384	310.6347231	234.557865	M4_p20	1.7	2.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.263	125	0	0	NA	5qB1	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr6	42286884	42286884	TG	T	ENSMUST00000031894.12	1	ENSMUSG00000029862	FS	G/X	40	Clcn1	ENSMUST00000031894.12:c.122del	ENSMUSP00000031894.6:p.Gly41AlafsTer70	H-2-Db	9	65	0	TTILNVKTV	NA	NetMHCpan	370.5	NA	NA	71	0.099	457.664	NA	NA	NA	742.55	NA	370.5	NA	495.0168702	NA	420.3102682	M4_p20	1.228571429	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.111	71	0	0	NA	6qB2.1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.607320846	sgMsh2	cell line
chr6	13193189	13193189	T	C	ENSMUST00000054530.6	1	ENSMUSG00000079679	missense	T/A	384	Vwde	ENSMUST00000054530.6:c.1150A>G	ENSMUSP00000058110.5:p.Thr384Ala	H-2-Kb	8	6	6	AVLYYAAV	AVLYYTAV	NetMHC	18.5	70.64	3.818	170	0.141	51.667	133.063	2.575	70.64	18.5	72.6	37	198.0341096	69.30107956	193.5263029	66.33458249	M4_p20	1.885714286	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.138	170	0	0	NA	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.755047539	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	8	4	8	VLVSYTRL	VLVSYTRI	NetMHC	19.39	171.38	8.839	174	0.19	31.763	209.772	6.604	171.38	19.39	99.5	20.3	348.1288376	53.67103866	248.1646968	43.22549746	M4_p20	0.642857143	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.195	174	0	0	NA	6qB2.1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	8	6	6	VSYTRLLV	VSYTRILV	NetMHCpan	35.2	39.9	1.134	174	0.19	94.957	84.621	0.891	32.04	39.69	39.9	35.2	129.3421274	150.2242346	135.1263357	158.7596015	M4_p20	0.642857143	0.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.195	174	0	0	NA	6qB2.1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr6	42400778	42400778	T	C	ENSMUST00000057398.3	NA	ENSMUSG00000046652	missense	S/P	181	Tas2r143	ENSMUST00000057398.3:c.541T>C	ENSMUSP00000057910.3:p.Ser181Pro	H-2-Kb	8	5	7	YYYLYHPV	YYYLYHSV	NetMHC	49.73	107.75	2.167	286	0.108	67.89	123.974	1.826	107.75	49.73	107.1	67.9	140.197413	67.8797134	145.794117	69.6209588	M4_p20	-0.1	-0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.112	286	0	0	NA	6qB2.1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.612792205	sgMsh2	cell line
chr5	110277756	110277756	A	G	ENSMUST00000031472.11	1	ENSMUSG00000029499	missense	F/L	138	Pxmp2	ENSMUST00000031472.11:c.412T>C	ENSMUSP00000031472.5:p.Phe138Leu	H-2-Kb	8	8	4	VSVLVAKM	VSVFVAKM	NetMHC	116.68	141.33	1.211	190	0.258	223.541	229.414	1.026	141.33	116.68	47.9	183	323.3999884	288.2305431	317.4972734	264.0827294	M4_p20	1.6	1.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.256	190	0	0	NA	5qF	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr6	35270381	35270381	A	G	ENSMUST00000031868.4	1	ENSMUSG00000029843	missense	I/T	568	Slc13a4	ENSMUST00000031868.4:c.1703T>C	ENSMUSP00000031868.4:p.Ile568Thr	H-2-Kb	8	11	1	TVFSYGHC	IVFSYGHC	SMMPMBEC	126.398	45.787	0.362	177	0.102	145.752	48.403	0.332	38.66	171.24	51.8	148.7	51.01994663	142.8038776	45.7867692	126.3979412	M4_p20	0.542857143	0.542857143	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.102	177	0	0	NA	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.558078615	sgMsh2	cell line
chr6	30815960	30815960	A	G	ENSMUST00000048774.12	1	ENSMUSG00000025607	missense	V/A	480	Copg2	ENSMUST00000048774.12:c.1439T>C	ENSMUSP00000038368.6:p.Val480Ala	H-2-Kb	8	6	6	FIFNRAVL	FIFNRVVL	SMM	138.912	401.55	2.891	153	0.092	159.887	404.813	2.532	524.31	178.28	359.2	181.6	401.5503419	138.9120754	408.0750101	141.4946437	M4_p20	1.3	1.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.115	153	0	0	NA	6qA3.3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.629206282	sgMsh2	cell line
chr6	42286884	42286884	TG	T	ENSMUST00000031894.12	1	ENSMUSG00000029862	FS	G/X	40	Clcn1	ENSMUST00000031894.12:c.122del	ENSMUSP00000031894.6:p.Gly41AlafsTer70	H-2-Kb	8	28	0	TQHRYMAI	NA	NetMHC	259.42	NA	NA	71	0.099	338.138	NA	NA	NA	259.42	NA	273.8	NA	443.3431473	NA	402.476011	M4_p20	-0.614285714	-0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.111	71	0	0	NA	6qB2.1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.607320846	sgMsh2	cell line
chr6	18405230	18405230	T	C	ENSMUST00000090601.11	1	ENSMUSG00000000416	missense	Y/C	1090	Cttnbp2	ENSMUST00000090601.11:c.3269A>G	ENSMUSP00000088089.5:p.Tyr1090Cys	H-2-Kb	8	7	5	SSVTCASM	SSVTYASM	NetMHC	276.55	6.31	0.023	528	0.17	362.299	24.523	0.068	6.31	276.55	15.8	475.5	35.70590129	399.7053856	33.24604589	324.8927349	M4_p20	1.157142857	1.157142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.179	528	0	0	NA	6qA2	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.979373257	sgMsh2	cell line
chr5	127609024	127609024	GA	G	ENSMUST00000031367.14	1	ENSMUSG00000029416	FS	F/X	198	Slc15a4	ENSMUST00000031367.14:c.593del	ENSMUSP00000031367.8:p.Phe198SerfsTer16	H-2-Kb	8	12	0	IGFTGALI	NA	NetMHCpan	136.9	NA	NA	58	0.362	275.62	NA	NA	NA	291.38	NA	136.9	NA	406.2000757	NA	259.8603386	M4_p20	1.628571429	1.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.361	58	0	0	NA	5qG1.2	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr5	143373198	143373198	CA	C	ENSMUST00000110733.8	1	ENSMUSG00000010825	FS	A/X	252	Grid2ip	ENSMUST00000110733.8:c.757del	ENSMUSP00000106361.2:p.Thr253ProfsTer66	H-2-Kb	8	51	0	LSCLAARL	NA	SMMPMBEC	117.69	NA	NA	13	0.231	231.458	NA	NA	NA	310.25	NA	703.1	NA	152.6651821	NA	117.6901185	M4_p20	1.2	1.2	FALSE	FALSE	FALSE	1	FALSE	0	Strelka2;Vardict	2	0.2308	13	0	0	NA	5qG2	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr5	144173959	144173959	A	G	ENSMUST00000041804.7	1	ENSMUSG00000038970	missense	Y/C	499	Lmtk2	ENSMUST00000041804.7:c.1496A>G	ENSMUSP00000048238.7:p.Tyr499Cys	H-2-Kb	8	11	1	CSSMFFPV	YSSMFFPV	NetMHCpan	187.3	88.2	0.471	67	0.149	275.346	160.65	0.583	138.6	317.37	88.2	187.3	221.6868845	268.3737286	182.7006111	282.3189304	M4_p20	1.214285714	1.214285714	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.19	67	0	0	NA	5qG2	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr5	123758488	123758488	A	G	ENSMUST00000031366.11	1	ENSMUSG00000029414	missense	N/D	138	Kntc1	ENSMUST00000031366.11:c.412A>G	ENSMUSP00000031366.7:p.Asn138Asp	H-2-Kb	8	5	7	SQRTYRDL	SQRTYRNL	SMM	239.74	37.217	0.155	205	0.537	352.064	42.914	0.122	25.66	412.56	218.3	1756.2	37.21688324	239.7397234	48.61160944	291.5680954	M4_p20	-2.028571429	-2.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.538	205	0	0	NA	5qF	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr5	143373198	143373198	CA	C	ENSMUST00000110733.8	1	ENSMUSG00000010825	FS	A/X	252	Grid2ip	ENSMUST00000110733.8:c.757del	ENSMUSP00000106361.2:p.Thr253ProfsTer66	H-2-Kb	8	17	0	VALALGVL	NA	SMM	226.851	NA	NA	13	0.231	270.856	NA	NA	NA	422.56	NA	272.1	NA	226.8506354	NA	269.6124854	M4_p20	2.685714286	2.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2308	13	0	0	NA	5qG2	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr6	38395159	38395159	A	G	ENSMUST00000162554.7	1	ENSMUSG00000056832	missense	N/S	228	Ttc26	ENSMUST00000162554.7:c.683A>G	ENSMUSP00000124369.1:p.Asn228Ser	H-2-Kb	8	8	4	KACSHFRL	KACNHFRL	SMMPMBEC	238.089	262.869	1.104	246	0.126	424.535	436.945	1.029	611.02	603.18	792.8	636.8	253.9451951	245.8895091	262.8693795	238.0893668	M4_p20	0.342857143	0.342857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.122	246	0	0	NA	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.667505795	sgMsh2	cell line
chr5	87694728	87694728	C	T	ENSMUST00000197422.4	1	ENSMUSG00000063157	missense	A/T	147	Csn2	ENSMUST00000197422.4:c.439G>A	ENSMUSP00000143341.1:p.Ala147Thr	H-2-Kb	8	9	3	SLTSLANL	SLASLANL	SMM	381.716	341.775	0.895	128	0.492	487.6	375.638	0.77	720.32	664.91	348.8	569	341.7747702	381.7156799	402.476011	406.2000757	M4_p20	1.171428571	1.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.494	128	0	0	NA	5qE1	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr6	30815960	30815960	A	G	ENSMUST00000048774.12	1	ENSMUSG00000025607	missense	V/A	480	Copg2	ENSMUST00000048774.12:c.1439T>C	ENSMUSP00000038368.6:p.Val480Ala	H-2-Kb	8	4	8	IRFIFNRA	IRFIFNRV	SMMPMBEC	232.135	48.277	0.208	153	0.092	482.306	47.673	0.099	40.71	683.59	149.1	1240.7	47.06954498	281.0217928	48.27696948	232.1346655	M4_p20	-0.085714286	0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.115	153	0	0	NA	6qA3.3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.629206282	sgMsh2	cell line
chr6	13193189	13193189	T	C	ENSMUST00000054530.6	1	ENSMUSG00000079679	missense	T/A	384	Vwde	ENSMUST00000054530.6:c.1150A>G	ENSMUSP00000058110.5:p.Thr384Ala	H-2-Kb	9	5	7	QAVLYYAAV	QAVLYYTAV	NetMHC	15.98	41.44	2.593	170	0.141	75.31	108.396	1.439	41.44	15.98	80.3	48.5	136.4928808	102.1198104	174.2809827	128.0117987	M4_p20	1.885714286	1.885714286	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.138	170	0	0	NA	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.755047539	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	9	3	9	LVLVSYTRL	LVLVSYTRI	NetMHC	46.33	202.94	4.38	174	0.19	99.281	285.444	2.875	202.94	46.33	207.6	48.9	371.6293451	149.6614677	363.2871195	157.1267038	M4_p20	0.642857143	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.195	174	0	0	NA	6qB2.1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr6	41394716	41394716	A	G	ENSMUST00000049079.8	1	ENSMUSG00000058119	missense	N/S	32	Gm5771	ENSMUST00000049079.8:c.95A>G	ENSMUSP00000039684.7:p.Asn32Ser	H-2-Kb	9	11	1	SSVPYQVSL	NSVPYQVSL	NetMHCpan	55	427.2	7.767	777	0.147	192.657	1089.876	5.657	863.77	57.03	427.2	55	1486.312054	344.4371603	1315.982154	328.2842143	M4_p20	0.714285714	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.149	777	0	0	NA	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.815232487	sgMsh2	cell line
chr5	101944143	101944143	T	A	ENSMUST00000053177.13	1	ENSMUSG00000043940	missense	K/N	443	Wdfy3	ENSMUST00000053177.13:c.1329A>T	ENSMUSP00000052607.7:p.Lys443Asn	H-2-Kb	9	8	4	VQNNYFEML	VQNKYFEML	NetMHC	62.66	107.77	1.72	133	0.301	165.336	170.625	1.032	107.77	62.66	106.6	107.7	272.3391013	275.4926395	233.4801695	222.9718309	M4_p20	-0.471428571	-0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.286	133	0	0	NA	5qE5	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr5	127609024	127609024	GA	G	ENSMUST00000031367.14	1	ENSMUSG00000029416	FS	F/X	198	Slc15a4	ENSMUST00000031367.14:c.593del	ENSMUSP00000031367.8:p.Phe198SerfsTer16	H-2-Kb	9	10	2	FSIGFTGAL	NA	NetMHC	67.05	NA	NA	58	0.362	176.099	NA	NA	NA	67.05	NA	115	NA	237.1974414	NA	246.7459312	M4_p20	1.628571429	1.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.361	58	0	0	NA	5qG1.2	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr6	42400778	42400778	T	C	ENSMUST00000057398.3	NA	ENSMUSG00000046652	missense	S/P	181	Tas2r143	ENSMUST00000057398.3:c.541T>C	ENSMUSP00000057910.3:p.Ser181Pro	H-2-Kb	9	5	7	YYYLYHPVL	YYYLYHSVL	NetMHCpan	51.9	51.9	1	286	0.108	75.206	66.576	0.885	66.74	105.71	51.9	51.9	67.46988967	76.57905451	66.41252616	73.83291242	M4_p20	0.628571429	0.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.112	286	0	0	NA	6qB2.1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.612792205	sgMsh2	cell line
chr6	42400778	42400778	T	C	ENSMUST00000057398.3	NA	ENSMUSG00000046652	missense	S/P	181	Tas2r143	ENSMUST00000057398.3:c.541T>C	ENSMUSP00000057910.3:p.Ser181Pro	H-2-Kb	9	4	8	RYYYLYHPV	RYYYLYHSV	NetMHCpan	93.8	136.1	1.451	286	0.108	144.701	252.687	1.746	269.81	154.16	136.1	93.8	235.5645857	135.2415065	277.4917016	162.2743955	M4_p20	-0.1	-0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.112	286	0	0	NA	6qB2.1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.612792205	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	9	4	8	VLVSYTRLL	VLVSYTRIL	NetMHCpan	118.1	254.3	2.153	174	0.19	338.726	712.479	2.103	683.46	204.18	254.3	118.1	741.4980274	473.271116	959.9530659	622.6586131	M4_p20	0.642857143	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.195	174	0	0	NA	6qB2.1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr5	137758482	137758482	TG	T	ENSMUST00000110985.1	2	ENSMUSG00000029723	FS	L/X	57	Tsc22d4	ENSMUST00000110985.1:c.177del	ENSMUSP00000106613.1:p.Pro60GlnfsTer18	H-2-Kb	9	22	0	VGWTKAFSL	NA	NetMHCpan	103.3	NA	NA	24	0.75	321.493	NA	NA	NA	216.16	NA	103.3	NA	472.1826226	NA	426.8251484	M4_p20	0.3	0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.721	24	0	0	NA	5qG2	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr5	101944090	101944090	T	C	ENSMUST00000053177.13	1	ENSMUSG00000043940	missense	K/R	461	Wdfy3	ENSMUST00000053177.13:c.1382A>G	ENSMUSP00000052607.7:p.Lys461Arg	H-2-Kb	9	5	7	LNYIPCREL	LNYIPCKEL	NetMHCpan	162.8	323.2	1.985	175	0.274	262.115	363.046	1.385	484.84	218.66	323.2	162.8	341.2793414	305.5694975	384.8132346	375.1889162	M4_p20	-0.014285714	-0.014285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.267	175	0	0	NA	5qE5	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr5	147315169	147315169	T	C	ENSMUST00000100433.4	1	ENSMUSG00000075543	missense	S/G	158	Urad	ENSMUST00000100433.4:c.472A>G	ENSMUSP00000098000.3:p.Ser158Gly	H-2-Kb	9	10	2	IGHLRLTDL	ISHLRLTDL	NetMHC	322.75	98.24	0.304	73	0.288	388.562	137.299	0.353	98.24	322.75	151.5	451.1	159.261206	457.2039776	123.0977174	326.0243217	M4_p20	-0.071428571	0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.291	73	0	0	NA	5qG3	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr6	42286884	42286884	TG	T	ENSMUST00000031894.12	1	ENSMUSG00000029862	FS	G/X	40	Clcn1	ENSMUST00000031894.12:c.122del	ENSMUSP00000031894.6:p.Gly41AlafsTer70	H-2-Kb	9	60	0	TAWMRTTIL	NA	NetMHCpan	157.5	NA	NA	71	0.099	221.615	NA	NA	NA	328.86	NA	157.5	NA	251.2522734	NA	191.9773533	M4_p20	0.485714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.111	71	0	0	NA	6qB2.1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.607320846	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	9	6	6	VSYTRLLVA	VSYTRILVA	NetMHCpan	129.9	163.6	1.259	174	0.19	176.155	270.535	1.536	712.71	415.25	163.6	129.9	323.6756285	203.287184	217.3952246	149.021867	M4_p20	1.014285714	1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.195	174	0	0	NA	6qB2.1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr6	57600007	57600007	T	C	ENSMUST00000031817.9	1	ENSMUSG00000029798	missense	L/P	235	Herc6	ENSMUST00000031817.9:c.704T>C	ENSMUSP00000031817.8:p.Leu235Pro	H-2-Db	9	6	6	GALKNPSVI	GALKNLSVI	NetMHC	13.46	7.99	0.594	273	0.121	47.099	27.26	0.579	7.99	13.46	16.8	37.5	48.2636319	70.24574131	37.71985373	56.6982951	M4_p20	0.385714286	0.385714286	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.134	273	0	0	NA	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.733162103	sgMsh2	cell line
chr6	120481057	120481057	C	A	ENSMUST00000002976.4	1	ENSMUSG00000002897	missense	H/N	390	Il17ra	ENSMUST00000002976.4:c.1168C>A	ENSMUSP00000002976.3:p.His390Asn	H-2-Db	9	7	5	YSADNPLYV	YSADHPLYV	NetMHCpan	114.4	2660.3	23.254	175	0.126	283.253	6911.933	24.402	13345.04	242.45	2660.3	114.4	6880.500013	324.05595	6943.365065	416.4568405	M4_p20	-0.014285714	-0.014285714	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.133	175	0	0	NA	6qF1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.727690744	sgMsh2	cell line
chr6	112310674	112310674	C	T	ENSMUST00000032376.5	1	ENSMUSG00000057604	missense	T/I	107	Lmcd1	ENSMUST00000032376.5:c.320C>T	ENSMUSP00000032376.5:p.Thr107Ile	H-2-Db	9	3	9	MIMTNPIAI	MIMTNPIAT	NetMHCpan	132.8	6713.1	50.55	135	0.2	312.896	6508.578	20.801	15999.54	278.6	6713.1	132.8	6304.055094	440.1695544	3536.470177	347.1922322	M4_p20	0.985714286	1	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.216	135	0	0	NA	6qE3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr6	123336368	123336368	T	C	ENSMUST00000073948.6	5	ENSMUSG00000091260	missense	I/T	799	Vmn2r19	ENSMUST00000073948.6:c.2396T>C	ENSMUSP00000073604.6:p.Ile799Thr	H-2-Kb	8	11	1	TSFVPTYL	ISFVPTYL	NetMHC	37.63	10.14	0.269	460	0.191	54.77	18.207	0.332	10.14	37.63	14.5	48.2	21.91492557	61.33946729	22.47708563	62.04974485	M4_p20	0.914285714	0.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.204	460	0	0	NA	6qF2	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr6	114302629	114302629	A	G	ENSMUST00000032454.7	1	ENSMUSG00000030310	missense	K/R	123	Slc6a1	ENSMUST00000032454.7:c.368A>G	ENSMUSP00000032454.5:p.Lys123Arg	H-2-Kb	8	6	6	LAPMFRGV	LAPMFKGV	NetMHC	85.05	307.58	3.616	109	0.156	326.028	633.35	1.943	307.58	85.05	408.2	184.6	1126.522836	545.4312289	858.499408	467.4552051	M4_p20	0.6	0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.177	109	0	0	NA	6qE3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.968430539	sgMsh2	cell line
chr6	124908510	124908510	CG	C	ENSMUST00000032217.1	1	ENSMUSG00000030124	FS	P/X	302	Lag3	ENSMUST00000032217.1:c.906del	ENSMUSP00000032217.1:p.Val303TrpfsTer45	H-2-Kb	8	16	0	VAILPFTL	NA	NetMHC	108.05	NA	NA	75	0.253	209.178	NA	NA	NA	108.05	NA	108.8	NA	309.5565516	NA	376.4783444	M4_p20	2.057142857	2.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.256	75	0	0	NA	6qF2	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr6	116702006	116702006	GC	G	ENSMUST00000056623.12	1	ENSMUSG00000048108	FS	G/X	36	Tmem72	ENSMUST00000056623.12:c.108del	ENSMUSP00000057942.6:p.Arg37GlyfsTer77	H-2-Kb	8	80	0	STLSWSGM	NA	NetMHC	165.56	NA	NA	110	0.127	251.323	NA	NA	NA	165.56	NA	224.2	NA	308.8445912	NA	278.4453695	M4_p20	0.3	0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.126	110	0	0	NA	6qE3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.689391231	sgMsh2	cell line
chr6	123815817	123815817	T	C	ENSMUST00000075095.6	5	ENSMUSG00000072780	missense	M/T	701	Vmn2r24	ENSMUST00000075095.6:c.2102T>C	ENSMUSP00000074602.5:p.Met701Thr	H-2-Kb	8	6	6	QMWMVTRL	QMWMVMRL	NetMHC	249.67	165.69	0.664	899	0.22	456.149	439.641	0.964	165.69	249.67	358.4	310.1	520.8827797	666.4076901	533.0156983	602.1989584	M4_p20	0.814285714	0.814285714	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.23	899	0	0	NA	6qF2	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr6	69283934	69283934	TA	T	ENSMUST00000103349.1	NA	ENSMUSG00000076548	FS	Y/X	70	Igkv4-69	ENSMUST00000103349.1:c.208del	ENSMUSP00000100150.1:p.Tyr70MetfsTer26	H-2-Kb	8	25	0	VAVGLGPL	NA	NetMHC	277.12	NA	NA	635	0.153	319.498	NA	NA	NA	277.12	NA	307.3	NA	344.9371732	NA	331.6958211	M4_p20	1.6	1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1528	635	0	0	NA	6qC1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.836023651	sgMsh2	cell line
chr6	90305116	90305116	A	G	ENSMUST00000054799.8	1	ENSMUSG00000049694	missense	Y/C	85	BC048671	ENSMUST00000054799.8:c.254A>G	ENSMUSP00000058483.2:p.Tyr85Cys	H-2-Kb	8	4	8	VAWPFSFC	VAWPFSFY	NetMHCpan	153.1	900.6	5.882	150	0.14	188.892	714.973	3.785	1434.71	338.59	900.6	153.1	529.3464441	165.0973111	373.0267702	212.686537	M4_p20	0.942857143	1.185714286	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.143	150	0	0	NA	6qD1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.782404333	sgMsh2	cell line
chr6	118776550	118776550	TA	T	ENSMUST00000112793.9	1	ENSMUSG00000051331	FS	F/X	208	Cacna1c	ENSMUST00000112793.9:c.624del	ENSMUSP00000108413.4:p.Phe208LeufsTer5	H-2-Kb	8	4	8	IIVVVGLL	IIVVVGLF	SMMPMBEC	306.719	3852.477	12.56	39	0.282	338.036	3691.713	10.921	3530.95	350.43	3260.2	600.6	5293.464441	325.64169	3852.476516	306.71852	M4_p20	3.471428571	3.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.299	39	0	0	NA	6qF1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr6	125980155	125980155	A	G	ENSMUST00000160496.7	1	ENSMUSG00000038115	missense	K/R	629	Ano2	ENSMUST00000160496.7:c.1886A>G	ENSMUSP00000125303.1:p.Lys629Arg	H-2-Kb	8	6	6	KAFLLRFV	KAFLLKFV	NetMHCpan	272.4	547.6	2.01	393	0.193	351.17	682.716	1.944	1229.78	480.77	547.6	272.4	681.9303192	330.1718172	683.502331	372.1688324	M4_p20	2.1	2.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.186	393	0	0	NA	6qF3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr6	72515320	72515320	A	G	ENSMUST00000162561.8	1	ENSMUSG00000052631	missense	V/A	181	Sh2d6	ENSMUST00000162561.8:c.542T>C	ENSMUSP00000124673.2:p.Val181Ala	H-2-Kb	8	5	7	QPFTLAAL	QPFTLAVL	SMM	136.691	321.914	2.355	86	0.174	392.013	1659.23	4.233	2868.95	584.16	4165.5	2841.1	321.9141004	136.691025	449.5106648	199.8664966	M4_p20	1.671428571	1.671428571	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.174	86	0	0	NA	6qC1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.952016462	sgMsh2	cell line
chr6	124908510	124908510	CG	C	ENSMUST00000032217.1	1	ENSMUSG00000030124	FS	P/X	302	Lag3	ENSMUST00000032217.1:c.906del	ENSMUSP00000032217.1:p.Val303TrpfsTer45	H-2-Kb	8	24	0	RLWVWHRL	NA	SMMPMBEC	207.367	NA	NA	75	0.253	336.204	NA	NA	NA	1111.14	NA	304.5	NA	367.908651	NA	207.3671696	M4_p20	0.328571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.256	75	0	0	NA	6qF2	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr6	123787388	123787388	C	A	ENSMUST00000075095.6	5	ENSMUSG00000072780	missense	A/D	408	Vmn2r24	ENSMUST00000075095.6:c.1223C>A	ENSMUSP00000074602.5:p.Ala408Asp	H-2-Kb	9	4	8	SSYKVHADV	SSYKVHAAV	NetMHC	37.39	11.05	0.296	634	0.148	239.309	133.864	0.559	11.05	37.39	31	117	261.2823058	488.776143	236.7282022	361.6179668	M4_p20	-0.242857143	-0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.145	634	0	0	NA	6qF2	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.793347051	sgMsh2	cell line
chr6	118511612	118511612	GT	G	ENSMUST00000112830.2	5	ENSMUSG00000007827	FS	N/X	1362	Ankrd26	ENSMUST00000112830.2:c.4085del	ENSMUSP00000108449.1:p.Asn1362ThrfsTer13	H-2-Kb	9	12	0	ITLKWISQL	NA	NetMHCpan	44	NA	NA	90	0.089	105.672	NA	NA	NA	48.32	NA	44	NA	235.5645857	NA	163.0234201	M4_p20	0.428571429	0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.103	90	0	0	NA	6qF1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.563549974	sgMsh2	cell line
chr6	120481057	120481057	C	A	ENSMUST00000002976.4	1	ENSMUSG00000002897	missense	H/N	390	Il17ra	ENSMUST00000002976.4:c.1168C>A	ENSMUSP00000002976.3:p.His390Asn	H-2-Kb	9	5	7	IVYSADNPL	IVYSADHPL	NetMHC	64.45	94.23	1.462	175	0.126	101.023	110.368	1.093	94.23	64.45	91.8	119.8	126.5056726	82.24509375	194.2003463	135.2851103	M4_p20	-0.728571429	0.2	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.133	175	0	0	NA	6qF1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.727690744	sgMsh2	cell line
chr6	124908510	124908510	CG	C	ENSMUST00000032217.1	1	ENSMUSG00000030124	FS	P/X	302	Lag3	ENSMUST00000032217.1:c.906del	ENSMUSP00000032217.1:p.Val303TrpfsTer45	H-2-Kb	9	17	0	AILPFTLRL	NA	NetMHCpan	45.3	NA	NA	75	0.253	185.425	NA	NA	NA	88.29	NA	45.3	NA	282.5595563	NA	326.7758854	M4_p20	1.057142857	2.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.256	75	0	0	NA	6qF2	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr6	108399280	108399280	C	T	ENSMUST00000032192.8	1	ENSMUSG00000030102	missense	R/W	1235	Itpr1	ENSMUST00000032192.8:c.3703C>T	ENSMUSP00000032192.6:p.Arg1235Trp	H-2-Kb	9	9	3	IMWLAHEFL	IMRLAHEFL	NetMHCpan	173.3	364.8	2.105	127	0.134	275.443	622.207	2.259	738.74	227.21	364.8	173.3	566.3827268	323.6756285	678.0317017	326.7758854	M4_p20	0.657142857	0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.154	127	0	0	NA	6qE1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.842589282	sgMsh2	cell line
chr6	108380923	108380923	A	T	ENSMUST00000032192.8	1	ENSMUSG00000030102	missense	K/M	521	Itpr1	ENSMUST00000032192.8:c.1562A>T	ENSMUSP00000032192.6:p.Lys521Met	H-2-Kb	9	9	3	IFMLLQAPF	IFKLLQAPF	NetMHC	243.96	1098.72	4.504	97	0.216	381.453	1088.97	2.855	1098.72	243.96	1897.8	649.4	1079.220037	368.2222268	940.2644145	394.6844353	M4_p20	1.285714286	2.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.202	97	0	0	NA	6qE1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr6	57258876	57258876	T	C	ENSMUST00000228297.1	NA	ENSMUSG00000115199	missense	V/A	243	Vmn1r15	ENSMUST00000228297.1:c.728T>C	ENSMUSP00000154252.1:p.Val243Ala	H-2-Kb	9	5	7	FVVMYWADF	FVVMYWVDF	NetMHC	306.14	761.72	2.488	434	0.113	379.005	706.007	1.863	761.72	306.14	3331.3	836.6	650.2943789	450.9309038	416.1500968	307.0789168	M4_p20	0.714285714	1.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.11	434	0	0	NA	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.601849487	sgMsh2	cell line
chr6	123815817	123815817	T	C	ENSMUST00000075095.6	5	ENSMUSG00000072780	missense	M/T	701	Vmn2r24	ENSMUST00000075095.6:c.2102T>C	ENSMUSP00000074602.5:p.Met701Thr	H-2-Kb	9	8	4	WMVTRLSNV	WMVMRLSNV	SMMPMBEC	371.749	308.496	0.83	899	0.22	393.346	326.071	0.829	273.51	374.49	1055.2	1159.9	343.6449768	412.2019102	308.4963287	371.7491635	M4_p20	0.385714286	0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.23	899	0	0	NA	6qF2	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr6	113578387	113578387	T	A	ENSMUST00000036340.11	1	ENSMUSG00000034023	missense	F/Y	1119	Fancd2	ENSMUST00000036340.11:c.3356T>A	ENSMUSP00000045667.5:p.Phe1119Tyr	H-2-Kb	9	3	9	QSFSYLQNY	QSFSYLQNF	SMM	108.67	62.389	0.574	173	0.139	297.381	61.045	0.205	32.08	374.85	59.7	1857.1	62.38928378	108.6700833	111.2371876	219.9125427	M4_p20	-0.542857143	-0.471428571	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.147	173	0	0	NA	6qE3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.804289769	sgMsh2	cell line
chr6	57258876	57258876	T	C	ENSMUST00000228297.1	NA	ENSMUSG00000115199	missense	V/A	243	Vmn1r15	ENSMUST00000228297.1:c.728T>C	ENSMUSP00000154252.1:p.Val243Ala	H-2-Kb	9	7	5	VMYWADFII	VMYWVDFII	SMM	154.565	218.328	1.413	434	0.113	312.379	430.03	1.377	602.28	395.01	1029	537.3	218.3282833	154.5645878	257.7804634	229.7470798	M4_p20	1.128571429	1.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.11	434	0	0	NA	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.601849487	sgMsh2	cell line
chr7	26611187	26611187	T	C	ENSMUST00000228367.1	NA	ENSMUSG00000091924	missense	M/V	298	Vmn1r185	ENSMUST00000228367.1:c.892A>G	ENSMUSP00000154816.1:p.Met298Val	H-2-Db	9	8	4	YSLVSRFNL	YSLMSRFNL	NetMHC	136.82	215.91	1.578	209	0.268	299.155	452.516	1.513	215.91	136.82	303	280.9	602.0325877	317.4095578	657.007005	372.8807814	M4_p20	0.828571429	0.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.247	209	0	0	NA	7qA3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr6	132755481	132755481	T	C	ENSMUST00000076150.2	NA	ENSMUSG00000060412	missense	V/A	251	Tas2r124	ENSMUST00000076150.2:c.752T>C	ENSMUSP00000075509.2:p.Val251Ala	H-2-Db	9	11	1	AAQKNQSEL	VAQKNQSEL	SMM	100.605	129.009	1.282	260	0.123	119.155	162.062	1.36	282.34	237.01	187.8	133.7	129.0089974	100.6051007	136.3232716	104.6092287	M4_p20	-2.128571429	-1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.13	260	0	0	NA	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.711276667	sgMsh2	cell line
chr7	30715068	30715068	A	C	ENSMUST00000005692.13	5	ENSMUSG00000005553	missense	K/T	172	Atp4a	ENSMUST00000005692.13:c.515A>C	ENSMUSP00000005692.6:p.Lys172Thr	H-2-Kb	8	6	6	IIASFTNL	IIASFKNL	NetMHC	5.47	11.93	2.181	81	0.185	10.603	20.873	1.969	11.93	5.47	18.1	9.3	23.64503711	11.90529058	28.16696149	15.33698525	M4_p20	1.128571429	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.176	81	0	0	NA	7qB1	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.96295918	sgMsh2	cell line
chr7	19643130	19643130	A	C	ENSMUST00000055242.10	1	ENSMUSG00000002981	missense	F/V	170	Clptm1	ENSMUST00000055242.10:c.508T>G	ENSMUSP00000051293.9:p.Phe170Val	H-2-Kb	8	4	8	SIYIHVYV	SIYIHVYF	NetMHC	15.47	62.57	4.045	153	0.275	41.881	121.629	2.904	62.57	15.47	80.8	57.4	162.4575876	35.70590129	166.6249377	48.05515695	M4_p20	1.657142857	1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.276	153	0	0	NA	7qA3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr6	134451069	134451069	T	C	ENSMUST00000032322.14	1	ENSMUSG00000030201	missense	Y/C	1520	Lrp6	ENSMUST00000032322.14:c.4559A>G	ENSMUSP00000032322.8:p.Tyr1520Cys	H-2-Kb	8	4	8	RSYSYRPC	RSYSYRPY	NetMHC	22.95	107.06	4.665	130	0.154	38.31	109.727	2.864	107.06	22.95	418.8	63.3	112.3931906	35.05419514	72.90209351	41.56616909	M4_p20	-1.114285714	-1.114285714	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.176	130	0	0	NA	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.96295918	sgMsh2	cell line
chr7	28320255	28320255	A	G	ENSMUST00000209141.1	1	ENSMUSG00000003435	missense	F/L	497	Supt5	ENSMUST00000209141.1:c.1489T>C	ENSMUSP00000147164.1:p.Phe497Leu	H-2-Kb	8	11	1	LVILFSDL	FVILFSDL	NetMHCpan	33.8	63.7	1.885	171	0.298	68.106	75.272	1.105	40.58	34.18	63.7	33.8	93.70008827	130.2386842	86.84403626	102.0328459	M4_p20	2.114285714	2.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.295	171	0	0	NA	7qA3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	6461136	6461136	T	C	ENSMUST00000214301.2	5	ENSMUSG00000048620	missense	V/A	209	Olfr1336	ENSMUST00000214301.2:c.626T>C	ENSMUSP00000150162.1:p.Val209Ala	H-2-Kb	8	10	2	IAILWGSL	IVILWGSL	NetMHCpan	26.7	38.1	1.427	414	0.266	48.129	52.985	1.101	49.64	35.34	38.1	26.7	82.36448742	81.04757034	56.33003227	60.91720937	M4_p20	1.685714286	1.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.274	414	0	0	NA	7qA1	chr7-3489139-7297085	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr6	141532679	141532679	A	G	ENSMUST00000032362.11	1	ENSMUSG00000030235	missense	K/R	56	Slco1c1	ENSMUST00000032362.11:c.167A>G	ENSMUSP00000032362.9:p.Lys56Arg	H-2-Kb	8	4	8	LSFVYFAR	LSFVYFAK	NetMHC	71.6	273.33	3.817	190	0.105	97.337	165.283	1.698	273.33	71.6	241.7	126.8	88.86689373	86.84403626	56.4598864	107.830098	M4_p20	0.714285714	1.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.108	190	0	0	NA	6qG2	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.590906769	sgMsh2	cell line
chr6	141532679	141532679	A	G	ENSMUST00000032362.11	1	ENSMUSG00000030235	missense	K/R	56	Slco1c1	ENSMUST00000032362.11:c.167A>G	ENSMUSP00000032362.9:p.Lys56Arg	H-2-Kb	8	5	7	SFVYFARA	SFVYFAKA	NetMHC	104.42	421.4	4.036	190	0.105	172.62	538.576	3.12	421.4	104.42	215.7	105.5	804.8964279	281.6696149	655.752568	239.7397234	M4_p20	1.085714286	1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.108	190	0	0	NA	6qG2	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.590906769	sgMsh2	cell line
chr6	141532679	141532679	A	G	ENSMUST00000032362.11	1	ENSMUSG00000030235	missense	K/R	56	Slco1c1	ENSMUST00000032362.11:c.167A>G	ENSMUSP00000032362.9:p.Lys56Arg	H-2-Kb	8	6	6	FVYFARAL	FVYFAKAL	NetMHCpan	53.9	100.9	1.872	190	0.105	100.957	211.274	2.093	281	106.91	100.9	53.9	196.218522	95.00358634	226.3288934	123.2366829	M4_p20	1.228571429	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.108	190	0	0	NA	6qG2	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.590906769	sgMsh2	cell line
chr7	4469203	4469203	GA	G	ENSMUST00000163893.7	1	ENSMUSG00000006154	FS	R/X	22	Eps8l1	ENSMUST00000163893.7:c.69del	ENSMUSP00000125840.1:p.Lys23AsnfsTer56	H-2-Kb	8	6	7	SIYEQRNV	SIYEQRKR	SMM	80.305	2021.808	25.177	260	0.25	140.518	10629.403	75.645	16431.11	121.91	19443.2	292.4	2021.808416	80.30452175	4827.696948	159.1255801	M4_p20	-1.085714286	-1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.235	260	0	0	NA	7qA1	chr7-3489139-7297085	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr6	134451076	134451076	T	C	ENSMUST00000032322.14	1	ENSMUSG00000030201	missense	R/G	1518	Lrp6	ENSMUST00000032322.14:c.4552A>G	ENSMUSP00000032322.8:p.Arg1518Gly	H-2-Kb	8	6	6	RSYSYGPY	RSYSYRPY	SMMPMBEC	72.902	72.902	1	123	0.146	122.156	109.727	0.898	107.06	123.88	418.8	436.7	112.3931906	120.4314735	72.90209351	72.90209351	M4_p20	-1.071428571	-1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.165	123	0	0	NA	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.902774231	sgMsh2	cell line
chr6	134451069	134451069	T	C	ENSMUST00000032322.14	1	ENSMUSG00000030201	missense	Y/C	1520	Lrp6	ENSMUST00000032322.14:c.4559A>G	ENSMUSP00000032322.8:p.Tyr1520Cys	H-2-Kb	8	11	1	CSYRHFAP	YSYRHFAP	NetMHC	134.9	77.72	0.576	130	0.154	195.012	134.543	0.69	77.72	134.9	80.4	161.6	188.68614	228.4230889	247.5939338	382.5956254	M4_p20	-0.971428571	-0.385714286	TRUE	FALSE	TRUE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.176	130	0	0	NA	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.96295918	sgMsh2	cell line
chr6	131630478	131630478	A	C	ENSMUST00000067597.4	NA	ENSMUSG00000054497	missense	L/R	118	Tas2r130	ENSMUST00000067597.4:c.353T>G	ENSMUSP00000063954.4:p.Leu118Arg	H-2-Kb	8	5	7	ANFFHPRF	ANFFHPLF	NetMHCpan	53.6	54.9	1.024	173	0.191	288.698	560.736	1.942	259.01	191.26	54.9	53.6	862.4620612	386.1357391	915.6721386	387.0258739	M4_p20	-0.628571429	-0.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.195	173	0	0	NA	6qF3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	26611187	26611187	T	C	ENSMUST00000228367.1	NA	ENSMUSG00000091924	missense	M/V	298	Vmn1r185	ENSMUST00000228367.1:c.892A>G	ENSMUSP00000154816.1:p.Met298Val	H-2-Kb	8	4	8	FMRSYSLV	FMRSYSLM	NetMHC	238.94	166.52	0.697	209	0.268	450.026	344.108	0.765	166.52	238.94	202.1	466.8	486.1160944	433.2514252	558.1359543	516.1072977	M4_p20	0.357142857	0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.247	209	0	0	NA	7qA3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	6460824	6460824	T	C	ENSMUST00000214301.2	5	ENSMUSG00000048620	missense	L/P	105	Olfr1336	ENSMUST00000214301.2:c.314T>C	ENSMUSP00000150162.1:p.Leu105Pro	H-2-Kb	8	10	2	QPFFFISL	QLFFFISL	SMM	55.557	57.377	1.033	195	0.226	156.209	63.18	0.404	173.98	385.02	51.6	229.1	57.37728575	55.55715525	68.98267002	83.31822323	M4_p20	2.042857143	2.042857143	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.238	195	0	0	NA	7qA1	chr7-3489139-7297085	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	10053061	10053061	C	T	ENSMUST00000074943.8	5	ENSMUSG00000094606	missense	G/R	40	Vmn2r50	ENSMUST00000074943.8:c.118G>A	ENSMUSP00000074476.6:p.Gly40Arg	H-2-Kb	8	5	7	IQDEYLRL	IQDEYLGL	SMM	150.918	253.945	1.683	146	0.596	317.133	564.557	1.78	860.74	479.12	1137.2	694.8	253.9451951	150.9176382	268.3737286	155.1457917	M4_p20	-1.242857143	-1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.602	146	0	0	NA	7qA1	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr7	3616061	3616061	A	G	ENSMUST00000039507.14	1	ENSMUSG00000054594	missense	I/T	6	Oscar	ENSMUST00000039507.14:c.17T>C	ENSMUSP00000041306.7:p.Ile6Thr	H-2-Kb	8	5	2	LTLQLSTL	LILQLSTL	SMMPMBEC	322.656	336.31	1.042	87	0.46	338.443	363.993	1.075	436.42	536.56	390.9	339.8	337.0854446	337.0854446	336.3101696	322.6561891	M4_p20	0.814285714	0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.442	87	0	0	NA	7qA1	chr7-3489139-7297085	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr6	142360906	142360906	G	T	ENSMUST00000041852.7	1	ENSMUSG00000041671	missense	K/N	386	Pyroxd1	ENSMUST00000041852.7:c.1158G>T	ENSMUSP00000036394.7:p.Lys386Asn	H-2-Kb	8	5	7	MGYYAANC	MGYYAAKC	NetMHCpan	200.1	550.6	2.752	416	0.163	337.295	1252.298	3.713	4234.22	695.92	550.6	200.1	1168.799454	290.2284617	1335.795574	384.3616066	M4_p20	-0.057142857	-0.057142857	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.172	416	0	0	NA	6qG2	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.941073744	sgMsh2	cell line
chr7	13028552	13028552	C	A	ENSMUST00000005705.7	1	ENSMUSG00000005566	missense	L/M	368	Trim28	ENSMUST00000005705.7:c.1102C>A	ENSMUSP00000005705.7:p.Leu368Met	H-2-Kb	8	9	3	KKMIYFQL	KKLIYFQL	SMMPMBEC	242.516	183.967	0.759	93	0.323	424.719	506.319	1.192	828.67	832.15	1033.4	533.4	183.9670312	316.0385059	183.9670312	242.5157786	M4_p20	0.614285714	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.322	93	0	0	NA	7qA1	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr7	6460824	6460824	T	C	ENSMUST00000214301.2	5	ENSMUSG00000048620	missense	L/P	105	Olfr1336	ENSMUST00000214301.2:c.314T>C	ENSMUSP00000150162.1:p.Leu105Pro	H-2-Kb	8	8	4	MTQPFFFI	MTQLFFFI	NetMHCpan	253.7	421.1	1.66	195	0.226	343.05	297.188	0.866	625.66	1151.99	421.1	253.7	151.2655393	288.2305431	173.2766328	397.8689062	M4_p20	1.014285714	1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.238	195	0	0	NA	7qA1	chr7-3489139-7297085	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr6	141532679	141532679	A	G	ENSMUST00000032362.11	1	ENSMUSG00000030235	missense	K/R	56	Slco1c1	ENSMUST00000032362.11:c.167A>G	ENSMUSP00000032362.9:p.Lys56Arg	H-2-Kb	9	4	8	LSFVYFARA	LSFVYFAKA	NetMHC	8.07	18.23	2.259	190	0.105	41.355	63.038	1.524	18.23	8.07	19.6	12.2	162.2220929	88.94263671	106.4755765	70.50988397	M4_p20	1.085714286	1.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.108	190	0	0	NA	6qG2	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.590906769	sgMsh2	cell line
chr7	26611187	26611187	T	C	ENSMUST00000228367.1	NA	ENSMUSG00000091924	missense	M/V	298	Vmn1r185	ENSMUST00000228367.1:c.892A>G	ENSMUSP00000154816.1:p.Met298Val	H-2-Kb	9	11	1	VSRFNLAHL	MSRFNLAHL	NetMHC	34.25	88.62	2.587	209	0.268	91.603	217.283	2.372	88.62	34.25	130.4	64.6	304.1655332	118.6069123	327.5291816	126.5464598	M4_p20	0.142857143	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.247	209	0	0	NA	7qA3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	25630422	25630422	G	T	ENSMUST00000205808.1	5	ENSMUSG00000060376	missense	P/H	92	Bckdha	ENSMUST00000205808.1:c.275C>A	ENSMUSP00000146018.1:p.Pro92His	H-2-Kb	9	10	5	RSWKHLSRL	RSWKPLSRL	NetMHCpan	40.3	284.5	7.06	42	0.143	90.509	379.431	4.192	202.73	43.85	284.5	40.3	474.3621186	146.9298381	571.8077009	137.1671136	M4_p20	-0.814285714	-0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.172	42	0	0	NA	7qA3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.941073744	sgMsh2	cell line
chr7	6460824	6460824	T	C	ENSMUST00000214301.2	5	ENSMUSG00000048620	missense	L/P	105	Olfr1336	ENSMUST00000214301.2:c.314T>C	ENSMUSP00000150162.1:p.Leu105Pro	H-2-Kb	9	9	3	TQPFFFISL	TQLFFFISL	NetMHCpan	22.2	37.6	1.694	195	0.226	148.711	101.231	0.681	72.67	60.77	37.6	22.2	138.0733939	236.6519024	129.7926202	245.0473442	M4_p20	2.042857143	2.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.238	195	0	0	NA	7qA1	chr7-3489139-7297085	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	6461136	6461136	T	C	ENSMUST00000214301.2	5	ENSMUSG00000048620	missense	V/A	209	Olfr1336	ENSMUST00000214301.2:c.626T>C	ENSMUSP00000150162.1:p.Val209Ala	H-2-Kb	9	10	2	IAILWGSLL	IVILWGSLL	NetMHC	79.58	110.35	1.387	414	0.266	134.3	179.951	1.34	110.35	79.58	151.4	83.2	208.5018919	185.4001153	225.0349638	194.6480243	M4_p20	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.274	414	0	0	NA	7qA1	chr7-3489139-7297085	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	26611187	26611187	T	C	ENSMUST00000228367.1	NA	ENSMUSG00000091924	missense	M/V	298	Vmn1r185	ENSMUST00000228367.1:c.892A>G	ENSMUSP00000154816.1:p.Met298Val	H-2-Kb	9	3	9	VFMRSYSLV	VFMRSYSLM	NetMHC	86.79	66.95	0.771	209	0.268	195.423	101.978	0.522	66.95	86.79	103.7	265	100.2559138	171.4391481	132.8158787	219.4067579	M4_p20	0.357142857	0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.247	209	0	0	NA	7qA3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr6	131630478	131630478	A	C	ENSMUST00000067597.4	NA	ENSMUSG00000054497	missense	L/R	118	Tas2r130	ENSMUST00000067597.4:c.353T>G	ENSMUSP00000063954.4:p.Leu118Arg	H-2-Kb	9	4	8	IANFFHPRF	IANFFHPLF	NetMHCpan	89.2	118.4	1.327	173	0.191	119.328	153.421	1.286	138.92	90.66	118.4	89.2	167.9229287	163.7231154	172.683165	147.9960077	M4_p20	-0.628571429	0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.195	173	0	0	NA	6qF3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr6	141532679	141532679	A	G	ENSMUST00000032362.11	1	ENSMUSG00000030235	missense	K/R	56	Slco1c1	ENSMUST00000032362.11:c.167A>G	ENSMUSP00000032362.9:p.Lys56Arg	H-2-Kb	9	5	7	SFVYFARAL	SFVYFAKAL	NetMHC	90.76	210.98	2.325	190	0.105	303.576	377.92	1.245	210.98	90.76	211.2	119.5	544.6405843	487.6519891	802.1396792	782.0778752	M4_p20	1.228571429	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.108	190	0	0	NA	6qG2	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.590906769	sgMsh2	cell line
chr6	134451069	134451069	T	C	ENSMUST00000032322.14	1	ENSMUSG00000030201	missense	Y/C	1520	Lrp6	ENSMUST00000032322.14:c.4559A>G	ENSMUSP00000032322.8:p.Tyr1520Cys	H-2-Kb	9	11	1	CSYRHFAPP	YSYRHFAPP	SMM	43.965	47.985	1.091	130	0.154	101.949	75.581	0.741	74.91	111.8	101.8	153.6	47.9854973	43.96529586	76.25178243	92.09795777	M4_p20	-1.085714286	-0.385714286	TRUE	FALSE	TRUE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.176	130	0	0	NA	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.96295918	sgMsh2	cell line
chr7	26611187	26611187	T	C	ENSMUST00000228367.1	NA	ENSMUSG00000091924	missense	M/V	298	Vmn1r185	ENSMUST00000228367.1:c.892A>G	ENSMUSP00000154816.1:p.Met298Val	H-2-Kb	9	6	6	RSYSLVSRF	RSYSLMSRF	NetMHCpan	141.6	108.4	0.766	209	0.268	189.696	134.173	0.707	111.27	145.45	108.4	141.6	157.0760603	233.9429705	198.2668013	302.8656361	M4_p20	0.485714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.247	209	0	0	NA	7qA3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr6	131630478	131630478	A	C	ENSMUST00000067597.4	NA	ENSMUSG00000054497	missense	L/R	118	Tas2r130	ENSMUST00000067597.4:c.353T>G	ENSMUSP00000063954.4:p.Leu118Arg	H-2-Kb	9	5	7	ANFFHPRFL	ANFFHPLFL	NetMHCpan	33.4	26.1	0.781	173	0.191	219.205	202.635	0.924	254.14	158.44	26.1	33.4	205.1681772	279.9690348	200.1013414	296.6538575	M4_p20	0.414285714	0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.195	173	0	0	NA	6qF3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	44860083	44860083	A	T	ENSMUST00000003044.13	1	ENSMUSG00000002963	missense	I/F	214	Pnkp	ENSMUST00000003044.13:c.640A>T	ENSMUSP00000003044.7:p.Ile214Phe	H-2-Kb	9	10	2	VFFTNQMGI	VIFTNQMGI	NetMHC	224.67	173.98	0.774	158	0.272	495.62	287.013	0.579	173.98	224.67	171	466.3	400.0460623	524.9404026	441.8247089	598.7561676	M4_p20	0.157142857	0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.265	158	0	0	NA	7qB3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	30715068	30715068	A	C	ENSMUST00000005692.13	5	ENSMUSG00000005553	missense	K/T	172	Atp4a	ENSMUST00000005692.13:c.515A>C	ENSMUSP00000005692.6:p.Lys172Thr	H-2-Kb	9	6	6	IIASFTNLV	IIASFKNLV	NetMHC	235.61	262.39	1.114	81	0.185	370.451	435.365	1.175	262.39	235.61	741.3	524.5	304.1655332	255.3347944	566.5653364	485.5679351	M4_p20	1.085714286	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.176	81	0	0	NA	7qB1	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.96295918	sgMsh2	cell line
chr7	28894591	28894591	T	G	ENSMUST00000068045.13	1	ENSMUSG00000054808	missense	Q/H	830	Actn4	ENSMUST00000068045.13:c.2490A>C	ENSMUSP00000066068.7:p.Gln830His	H-2-Kb	9	8	4	VTFHAFIDF	VTFQAFIDF	NetMHCpan	146.4	153.5	1.048	98	0.235	189.821	227.721	1.2	272.3	241.28	153.5	146.4	235.0228021	195.0338527	220.4194935	184.6077801	M4_p20	1.142857143	1.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.254	98	0	0	NA	7qB1	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr6	134484391	134484391	T	G	ENSMUST00000032322.14	1	ENSMUSG00000030201	missense	E/A	701	Lrp6	ENSMUST00000032322.14:c.2102A>C	ENSMUSP00000032322.8:p.Glu701Ala	H-2-Kb	9	4	8	SALEHVVAF	SALEHVVEF	NetMHC	346.5	552.55	1.595	247	0.17	444.167	549.223	1.237	552.55	346.5	572.2	399.4	545.8961105	515.3591605	539.8212792	488.9337312	M4_p20	1.442857143	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.164	247	0	0	NA	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.897302872	sgMsh2	cell line
chr6	137514729	137514729	T	G	ENSMUST00000058210.12	1	ENSMUSG00000015766	missense	K/Q	334	Eps8	ENSMUST00000058210.12:c.1000A>C	ENSMUSP00000052776.6:p.Lys334Gln	H-2-Kb	9	10	2	QQFKHGFNL	QKFKHGFNL	NetMHCpan	228.2	1667.3	7.306	91	0.297	490.17	1127.42	2.3	1187.63	398.09	1667.3	228.2	869.1805512	582.2506741	1067.21028	738.3291242	M4_p20	-0.228571429	-0.228571429	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.268	91	0	0	NA	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr7	10100105	10100105	A	C	ENSMUST00000094863.5	5	ENSMUSG00000058685	missense	N/K	335	Vmn2r51	ENSMUST00000094863.5:c.1005T>G	ENSMUSP00000092459.4:p.Asn335Lys	H-2-Kb	9	7	5	SGFKKFVQT	SGFKNFVQT	NetMHCpan	246.4	610.6	2.478	456	0.077	341.905	660.005	1.93	709.41	399.2	610.6	246.4	991.0829389	500.1612019	593.2667381	284.6098982	M4_p20	-0.314285714	0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.08	456	0	0	NA	7qA1	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.437708718	sgMsh2	cell line
chr7	10169124	10169124	A	G	ENSMUST00000164918.2	5	ENSMUSG00000091930	missense	I/T	459	Vmn2r52	ENSMUST00000164918.2:c.1376T>C	ENSMUSP00000129352.1:p.Ile459Thr	H-2-Kb	9	4	8	VIMKQRVTL	VIMKQRVIL	NetMHCpan	379.7	920.2	2.423	360	0.256	472.225	755.37	1.6	1031.4	466.8	920.2	379.7	533.469998	477.6502397	590.540925	500.3224609	M4_p20	-0.385714286	0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.266	360	0	0	NA	7qA1	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr6	131630478	131630478	A	C	ENSMUST00000067597.4	NA	ENSMUSG00000054497	missense	L/R	118	Tas2r130	ENSMUST00000067597.4:c.353T>G	ENSMUSP00000063954.4:p.Leu118Arg	H-2-Kb	10	4	8	IANFFHPRFL	IANFFHPLFL	NetMHCpan	94	86.2	0.917	173	0.191	481.421	614.879	1.277	539.74	269.64	86.2	94	925.4010757	949.1393959	690.0173327	693.202308	M4_p20	0.414285714	0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.195	173	0	0	NA	6qF3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	86616391	86616391	T	C	ENSMUST00000078588.1	NA	ENSMUSG00000062042	missense	T/A	85	Olfr294	ENSMUST00000078588.1:c.253A>G	ENSMUSP00000077662.1:p.Thr85Ala	H-2-Db	9	10	2	IAHNNSISI	ITHNNSISI	NetMHC	48.57	1098.4	22.615	219	0.219	83.312	784.711	9.419	1098.4	48.57	677	63.2	672.3880711	103.4236832	892.4214493	156.1600718	M4_p20	-0.4	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.212	219	0	0	NA	7qD3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	103732555	103732555	C	T	ENSMUST00000098193.3	5	ENSMUSG00000096516	missense	L/F	210	Olfr628	ENSMUST00000098193.3:c.628C>T	ENSMUSP00000095795.1:p.Leu210Phe	H-2-Db	9	8	4	FSIFGLDII	FSILGLDII	NetMHC	113.22	76.81	0.678	605	0.179	280.953	184.204	0.656	76.81	113.22	86.2	122.8	298.2771604	445.2664776	282.2084413	439.1066356	M4_p20	2.314285714	2.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.18	605	0	0	NA	7qE3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.984844616	sgMsh2	cell line
chr7	81101095	81101095	T	C	ENSMUST00000107348.1	1	ENSMUSG00000038763	missense	W/R	1538	Alpk3	ENSMUST00000107348.1:c.4612T>C	ENSMUSP00000102971.1:p.Trp1538Arg	H-2-Db	9	9	3	YQRTNGSFL	YQWTNGSFL	NetMHCpan	123.2	26.5	0.215	67	0.299	312.704	56.356	0.18	8.22	131.53	26.5	123.2	91.33137583	493.878363	86.21245256	572.2291797	M4_p20	-0.471428571	-0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.292	67	0	0	NA	7qD3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	66784798	66784798	T	C	ENSMUST00000066475.10	1	ENSMUSG00000030510	missense	W/R	216	Cers3	ENSMUST00000066475.10:c.646T>C	ENSMUSP00000069238.8:p.Trp216Arg	H-2-Kb	8	8	4	SQYRYYIL	SQYWYYIL	NetMHC	4.27	6.01	1.407	479	0.18	11.074	15.356	1.387	6.01	4.27	10.4	7.4	20.3114066	14.74823333	31.82291802	20.73671696	M4_p20	-0.514285714	-0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.197	479	0	0	NA	7qC	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	99667112	99667112	T	C	ENSMUST00000107088.7	1	ENSMUSG00000030737	missense	T/A	404	Slco2b1	ENSMUST00000107088.7:c.1210A>G	ENSMUSP00000102703.1:p.Thr404Ala	H-2-Kb	8	10	2	IAASFANM	ITASFANM	NetMHC	5.86	5.92	1.01	70	0.2	17.404	13.8	0.793	5.92	5.86	10.9	9	16.70090478	25.80714726	19.75786438	31.24208431	M4_p20	0.828571429	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.235	70	0	0	NA	7qE1	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	108066532	108066532	T	C	ENSMUST00000071658.2	NA	ENSMUSG00000063120	missense	M/V	89	Olfr480	ENSMUST00000071658.2:c.265A>G	ENSMUSP00000071583.2:p.Met89Val	H-2-Kb	8	11	1	VYLFLSHL	MYLFLSHL	NetMHCpan	13.1	28.9	2.206	299	0.227	134.327	287.934	2.144	52.58	23.33	28.9	13.1	523.2870654	245.323979	556.8522772	262.8693795	M4_p20	1.271428571	1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.244	299	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	103732555	103732555	C	T	ENSMUST00000098193.3	5	ENSMUSG00000096516	missense	L/F	210	Olfr628	ENSMUST00000098193.3:c.628C>T	ENSMUSP00000095795.1:p.Leu210Phe	H-2-Kb	8	6	6	VAFSIFGL	VAFSILGL	NetMHCpan	12.1	17.7	1.463	605	0.179	44.539	74.275	1.668	44.14	27.17	17.7	12.1	120.1544888	73.91626265	104.4094962	61.9070344	M4_p20	2.071428571	2.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.18	605	0	0	NA	7qE3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.984844616	sgMsh2	cell line
chr7	108031681	108031681	A	G	ENSMUST00000210173.2	3	ENSMUSG00000094426	missense	Y/H	221	Olfr478	ENSMUST00000210173.2:c.661T>C	ENSMUSP00000147713.1:p.Tyr221His	H-2-Kb	8	9	3	ISHIYILI	ISYIYILI	NetMHCpan	32.1	7	0.218	639	0.228	78.835	8.59	0.109	4.24	53.98	7	32.1	10.56185011	124.3769779	10.17981768	103.6907462	M4_p20	1.714285714	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.24	639	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	104916819	104916819	A	G	ENSMUST00000217177.1	5	ENSMUSG00000056782	missense	L/P	159	Olfr667	ENSMUST00000217177.1:c.476T>C	ENSMUSP00000150340.1:p.Leu159Pro	H-2-Kb	8	9	3	FIPPFTFL	FILPFTFL	NetMHC	70.16	42.57	0.607	272	0.261	118.633	49.128	0.414	42.57	70.16	74.5	251.3	40.15503419	94.13258822	55.68522772	143.1330745	M4_p20	1.428571429	1.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.259	272	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	102927910	102927910	T	A	ENSMUST00000215782.2	5	ENSMUSG00000073963	missense	I/N	94	Olfr572	ENSMUST00000215782.2:c.281T>A	ENSMUSP00000149174.1:p.Ile94Asn	H-2-Kb	8	6	6	FNYKFNTF	FNYKFITF	NetMHCpan	50.8	48.2	0.949	249	0.265	130.321	119.91	0.92	86.45	77.52	48.2	50.8	158.0301673	183.1217795	153.3698525	187.8192059	M4_p20	-1.042857143	-1.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.276	249	0	0	NA	7qE3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	127905762	127905762	T	C	ENSMUST00000071056.13	1	ENSMUSG00000030802	missense	I/T	130	Bckdk	ENSMUST00000071056.13:c.389T>C	ENSMUSP00000070345.7:p.Ile130Thr	H-2-Kb	8	10	2	YTRAFQKL	YIRAFQKL	NetMHCpan	121.7	137.9	1.133	283	0.173	139.122	142.352	1.023	95.73	131.44	137.9	121.7	146.8047136	146.8047136	188.2521739	180.6092545	M4_p20	-0.6	-0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.166	283	0	0	NA	7qF3	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.90824559	sgMsh2	cell line
chr7	84856666	84856666	T	C	ENSMUST00000211582.1	2	ENSMUSG00000070460	missense	L/S	101	Olfr291	ENSMUST00000211582.1:c.302T>C	ENSMUSP00000148266.1:p.Leu101Ser	H-2-Kb	8	10	2	ASQLYFLV	ALQLYFLV	NetMHC	147.53	3327.57	22.555	410	0.312	175.029	2029.316	11.594	3327.57	147.53	2934.7	203.6	1123.931906	163.9607892	1108.510982	186.0972691	M4_p20	1.285714286	1.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.305	410	0	0	NA	7qD3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	105555462	105555462	AC	A	ENSMUST00000046983.9	1	ENSMUSG00000037049	FS	P/X	183	Smpd1	ENSMUST00000046983.9:c.551del	ENSMUSP00000042187.8:p.Pro184GlnfsTer72	H-2-Kb	8	47	0	VQIHFAAA	NA	SMMPMBEC	150.918	NA	NA	127	0.236	175.233	NA	NA	NA	165.65	NA	488.7	NA	184.8161845	NA	150.9176382	M4_p20	0.857142857	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.234	127	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	108171874	108171874	G	A	ENSMUST00000072035.3	NA	ENSMUSG00000096068	missense	P/L	290	Olfr486	ENSMUST00000072035.3:c.869C>T	ENSMUSP00000071918.3:p.Pro290Leu	H-2-Kb	8	5	7	VIPVLNLL	VIPVLNPL	NetMHC	173.73	43.03	0.248	284	0.243	354.134	130.801	0.369	43.03	173.73	146.4	422.9	115.8083836	306.71852	145.794117	401.5503419	M4_p20	2.142857143	2.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.241	284	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	108031681	108031681	A	G	ENSMUST00000210173.2	3	ENSMUSG00000094426	missense	Y/H	221	Olfr478	ENSMUST00000210173.2:c.661T>C	ENSMUSP00000147713.1:p.Tyr221His	H-2-Kb	8	7	5	IAISHIYI	IAISYIYI	NetMHCpan	132.8	22.8	0.172	639	0.228	294.664	57.982	0.197	28.92	212.85	22.8	132.8	99.25216755	384.3616066	87.04423244	376.4783444	M4_p20	1.428571429	1.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.24	639	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	91940074	91940074	T	A	ENSMUST00000107196.9	1	ENSMUSG00000052572	missense	I/N	227	Dlg2	ENSMUST00000107196.9:c.680T>A	ENSMUSP00000102814.2:p.Ile227Asn	H-2-Kb	8	5	7	SIYVTKNI	SIYVTKII	NetMHC	242.01	2437.57	10.072	272	0.279	286.831	2390.198	8.333	2437.57	242.01	1637.8	259.8	2481.646968	364.5356443	2342.825811	313.8629122	M4_p20	0.542857143	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.309	272	0	0	NA	7qE1	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	105555462	105555462	AC	A	ENSMUST00000046983.9	1	ENSMUSG00000037049	FS	P/X	183	Smpd1	ENSMUST00000046983.9:c.551del	ENSMUSP00000042187.8:p.Pro184GlnfsTer72	H-2-Kb	8	38	0	STWRAQTL	NA	NetMHCpan	140.5	NA	NA	127	0.236	249.349	NA	NA	NA	259.51	NA	140.5	NA	239.1883374	NA	262.2647967	M4_p20	-0.671428571	-0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.234	127	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	143781688	143781688	A	T	ENSMUST00000054048.9	1	ENSMUSG00000048965	missense	L/H	26	Mrgpre	ENSMUST00000054048.9:c.77T>A	ENSMUSP00000058000.8:p.Leu26His	H-2-Kb	8	7	5	TILSHTEL	TILSLTEL	SMM	254.531	564.599	2.218	59	0.22	270.59	569.599	2.105	574.6	263.48	405.1	277.7	564.598864	254.5305993	580.4168341	288.8949831	M4_p20	0.557142857	0.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.244	59	0	0	NA	7qF5	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	108714066	108714066	C	A	ENSMUST00000074730.3	NA	ENSMUSG00000056946	missense	L/M	238	Olfr512	ENSMUST00000074730.3:c.712C>A	ENSMUSP00000074291.4:p.Leu238Met	H-2-Kb	8	6	6	ILFTIMRM	ILFTILRM	NetMHCpan	74.1	112.6	1.52	468	0.212	290.124	605.685	2.088	729.71	264.21	112.6	74.1	758.1235717	462.1042896	481.6593553	316.0385059	M4_p20	1.385714286	1.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.22	468	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	100503182	100503182	A	G	ENSMUST00000207405.1	1	ENSMUSG00000030708	missense	M/T	309	Dnajb13	ENSMUST00000207405.1:c.926T>C	ENSMUSP00000147019.1:p.Met309Thr	H-2-Kb	8	13	2	QTLRQALL	QMLRQALL	SMM	286.906	520.883	1.816	70	0.243	461.754	706.441	1.53	350.19	416.82	892	1408.6	520.8827797	286.906244	911.4650073	506.6872779	M4_p20	0.642857143	0.642857143	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.279	70	0	0	NA	7qE2	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	108066532	108066532	T	C	ENSMUST00000071658.2	NA	ENSMUSG00000063120	missense	M/V	89	Olfr480	ENSMUST00000071658.2:c.265A>G	ENSMUSP00000071583.2:p.Met89Val	H-2-Kb	8	8	4	HTPVYLFL	HTPMYLFL	NetMHCpan	245.7	219.6	0.894	299	0.227	262.002	292.515	1.116	407.26	463.94	219.6	245.7	316.0385059	266.5262568	268.9923939	257.4779247	M4_p20	1.571428571	1.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.244	299	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	140176434	140176434	T	A	ENSMUST00000055890.5	NA	ENSMUSG00000051051	missense	Y/N	111	Olfr523	ENSMUST00000055890.5:c.331T>A	ENSMUSP00000052678.5:p.Tyr111Asn	H-2-Kb	8	10	2	MNFVFSLG	MYFVFSLG	SMM	60.777	282.97	4.656	140	0.271	150.941	742.804	4.921	3267.38	503.91	1126.9	212.4	282.9697428	60.77710368	358.7071224	89.4828896	M4_p20	1.271428571	1.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.292	140	0	0	NA	7qF4	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	118184633	118184633	A	G	ENSMUST00000032891.14	5	ENSMUSG00000030655	missense	I/T	1010	Smg1	ENSMUST00000032891.14:c.3029T>C	ENSMUSP00000032891.8:p.Ile1010Thr	H-2-Kb	8	10	2	VTRTFFYT	VIRTFFYT	SMMPMBEC	171.293	178.542	1.042	41	0.341	289.521	381.421	1.317	584.25	624.96	544.7	360.9	218.1423563	218.1423563	178.5418375	171.2931516	M4_p20	-0.328571429	0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.363	41	0	0	NA	7qF1	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr7	86811337	86811337	G	A	ENSMUST00000164996.1	5	ENSMUSG00000090949	missense	V/I	624	Vmn2r77	ENSMUST00000164996.1:c.1870G>A	ENSMUSP00000129540.1:p.Val624Ile	H-2-Kb	8	6	6	ETLSYILL	ETLSYVLL	SMMPMBEC	299.737	258.071	0.861	501	0.248	438.719	380.319	0.867	864.89	988.22	444.6	532.5	316.0385059	344.9371732	258.0714726	299.7367541	M4_p20	1.871428571	1.871428571	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.253	501	0	0	NA	7qD3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	140539159	140539159	C	A	ENSMUST00000210949.2	3	ENSMUSG00000110092	missense	P/H	214	Olfr537-ps1	ENSMUST00000210949.2:c.641C>A	ENSMUSP00000147565.2:p.Pro214His	H-2-Kb	8	5	7	ASIFYLHC	ASIFYLPC	SMM	383.478	249.885	0.652	890	0.21	470.475	320.915	0.682	1250.35	1238.62	362.1	529.1	249.8848923	383.4775994	279.7306149	411.8508816	M4_p20	1.185714286	1.185714286	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.213	890	0	0	NA	7qF4	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	86811337	86811337	G	A	ENSMUST00000164996.1	5	ENSMUSG00000090949	missense	V/I	624	Vmn2r77	ENSMUST00000164996.1:c.1870G>A	ENSMUSP00000129540.1:p.Val624Ile	H-2-Kb	9	8	4	LSYILLTSL	LSYVLLTSL	NetMHCpan	26.5	23.3	0.879	501	0.248	55.636	50.423	0.906	24.09	28.24	23.3	26.5	76.75558746	92.92017092	84.382036	83.03286055	M4_p20	1.871428571	1.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.253	501	0	0	NA	7qD3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	108066532	108066532	T	C	ENSMUST00000071658.2	NA	ENSMUSG00000063120	missense	M/V	89	Olfr480	ENSMUST00000071658.2:c.265A>G	ENSMUSP00000071583.2:p.Met89Val	H-2-Kb	9	10	2	PVYLFLSHL	PMYLFLSHL	SMM	27.74	12.797	0.461	299	0.227	31.825	25.891	0.814	28.38	30.85	39.4	32.8	12.79705392	27.74022632	23.40183969	47.56089297	M4_p20	1.271428571	1.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.244	299	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	140539159	140539159	C	A	ENSMUST00000210949.2	3	ENSMUSG00000110092	missense	P/H	214	Olfr537-ps1	ENSMUST00000210949.2:c.641C>A	ENSMUSP00000147565.2:p.Pro214His	H-2-Kb	9	7	5	IFYLHCYPM	IFYLPCYPM	SMM	35.654	115.109	3.228	890	0.21	39.559	147.343	3.725	99.02	36.04	240.3	70.5	115.1091906	35.65414284	179.5767056	43.07745129	M4_p20	0.114285714	1.114285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.213	890	0	0	NA	7qF4	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	99667112	99667112	T	C	ENSMUST00000107088.7	1	ENSMUSG00000030737	missense	T/A	404	Slco2b1	ENSMUST00000107088.7:c.1210A>G	ENSMUSP00000102703.1:p.Thr404Ala	H-2-Kb	9	10	2	IAASFANML	ITASFANML	NetMHC	49.5	59.95	1.211	70	0.2	106.089	142.925	1.347	59.95	49.5	72	56.9	213.850367	155.2780255	358.3026333	277.4917016	M4_p20	1.114285714	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.235	70	0	0	NA	7qE1	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	99667112	99667112	T	C	ENSMUST00000107088.7	1	ENSMUSG00000030737	missense	T/A	404	Slco2b1	ENSMUST00000107088.7:c.1210A>G	ENSMUSP00000102703.1:p.Thr404Ala	H-2-Kb	9	9	3	SIAASFANM	SITASFANM	NetMHC	52.64	67.03	1.273	70	0.2	261.476	391.398	1.497	67.03	52.64	142.9	83.3	639.8968908	439.6529586	738.3291242	556.2243536	M4_p20	0.828571429	1.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.235	70	0	0	NA	7qE1	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	84856666	84856666	T	C	ENSMUST00000211582.1	2	ENSMUSG00000070460	missense	L/S	101	Olfr291	ENSMUST00000211582.1:c.302T>C	ENSMUSP00000148266.1:p.Leu101Ser	H-2-Kb	9	11	1	SQLYFLVAL	LQLYFLVAL	NetMHC	66.9	251.74	3.763	410	0.312	144.691	319.716	2.21	251.74	66.9	421.8	80.4	313.4079437	208.9825384	326.0243217	254.2435828	M4_p20	2.7	2.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.305	410	0	0	NA	7qD3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	86230157	86230157	G	T	ENSMUST00000165771.1	5	ENSMUSG00000091239	missense	L/I	312	Vmn2r76	ENSMUST00000165771.1:c.934C>A	ENSMUSP00000127309.1:p.Leu312Ile	H-2-Kb	9	11	1	IFNSFHGTL	LFNSFHGTL	NetMHC	90.6	323.06	3.566	159	0.214	213.074	517.132	2.427	323.06	90.6	536.4	171.4	497.86317	254.7475407	565.2622723	289.2344371	M4_p20	-0.285714286	0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.19	159	0	0	NA	7qD3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	141432693	141432693	T	A	ENSMUST00000019226.13	1	ENSMUSG00000019082	missense	D/V	88	Slc25a22	ENSMUST00000019226.13:c.263A>T	ENSMUSP00000019226.7:p.Asp88Val	H-2-Kb	9	9	3	ANVFFRHQL	ANDFFRHQL	NetMHCpan	41.7	531.7	12.751	62	0.258	200.697	664.207	3.31	733.78	115.47	531.7	41.7	741.4980274	350.0338139	594.6343592	285.9235978	M4_p20	0.342857143	0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.225	62	0	0	NA	7qF5	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	140176434	140176434	T	A	ENSMUST00000055890.5	NA	ENSMUSG00000051051	missense	Y/N	111	Olfr523	ENSMUST00000055890.5:c.331T>A	ENSMUSP00000052678.5:p.Tyr111Asn	H-2-Kb	9	8	4	TQMNFVFSL	TQMYFVFSL	NetMHCpan	54.3	50.5	0.93	140	0.271	363.925	320.472	0.881	177.38	122.16	50.5	54.3	463.5643185	662.384254	487.8092149	605.6894373	M4_p20	1.6	1.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.292	140	0	0	NA	7qF4	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	108031681	108031681	A	G	ENSMUST00000210173.2	3	ENSMUSG00000094426	missense	Y/H	221	Olfr478	ENSMUST00000210173.2:c.661T>C	ENSMUSP00000147713.1:p.Tyr221His	H-2-Kb	9	7	5	IAISHIYIL	IAISYIYIL	NetMHCpan	89.6	39.6	0.442	639	0.228	172.099	112.772	0.655	92.77	178.58	39.6	89.6	132.7730709	165.6189397	178.3405083	224.0010221	M4_p20	1.714285714	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.24	639	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	66784798	66784798	T	C	ENSMUST00000066475.10	1	ENSMUSG00000030510	missense	W/R	216	Cers3	ENSMUST00000066475.10:c.646T>C	ENSMUSP00000069238.8:p.Trp216Arg	H-2-Kb	9	8	4	SQYRYYILE	SQYWYYILE	SMM	92.493	70.325	0.76	479	0.18	160.502	195.895	1.221	314.3	217.43	396.3	364.7	70.32504197	92.49324152	77.49077422	103.5738214	M4_p20	-0.514285714	-0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.197	479	0	0	NA	7qC	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	138229856	138229856	A	G	ENSMUST00000160436.1	5	ENSMUSG00000091002	missense	M/T	464	Tcerg1l	ENSMUST00000160436.1:c.1391T>C	ENSMUSP00000124476.1:p.Met464Thr	H-2-Kb	9	5	7	VTHFRDTLL	VTHFRDMLL	SMMPMBEC	144.295	160.048	1.109	81	0.21	193.254	171.84	0.889	177.68	224.66	340.6	468.5	166.0007308	161.8489924	160.0479073	144.2945739	M4_p20	-0.214285714	-0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.23	81	0	0	NA	7qF4	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	104068260	104068260	T	G	ENSMUST00000213184.1	5	ENSMUSG00000110012	missense	K/T	257	Olfr644	ENSMUST00000213184.1:c.770A>C	ENSMUSP00000149070.1:p.Lys257Thr	H-2-Kb	9	6	6	IFYVPTVGV	IFYVPKVGV	NetMHC	256.22	304.24	1.187	247	0.198	428.01	503.566	1.177	304.24	256.22	991.5	701	405.6112574	340.4944207	601.5199005	515.5253194	M4_p20	1.228571429	1.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.206	247	0	0	NA	7qE3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	140176434	140176434	T	A	ENSMUST00000055890.5	NA	ENSMUSG00000051051	missense	Y/N	111	Olfr523	ENSMUST00000055890.5:c.331T>A	ENSMUSP00000052678.5:p.Tyr111Asn	H-2-Kb	9	10	2	MNFVFSLGC	MYFVFSLGC	NetMHCpan	260	1759.1	6.766	140	0.271	333.509	1085.74	3.256	1269.39	263.27	1759.1	260	709.7575157	403.747643	902.0902731	516.713728	M4_p20	2.128571429	2.128571429	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.292	140	0	0	NA	7qF4	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	104916819	104916819	A	G	ENSMUST00000217177.1	5	ENSMUSG00000056782	missense	L/P	159	Olfr667	ENSMUST00000217177.1:c.476T>C	ENSMUSP00000150340.1:p.Leu159Pro	H-2-Kb	9	5	7	RSVAFIPPF	RSVAFILPF	NetMHCpan	137.7	225.1	1.635	272	0.261	398.55	600.349	1.506	581.1	281.74	225.1	137.7	619.5979897	515.3591605	647.5152482	556.2243536	M4_p20	1.842857143	1.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.259	272	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	104068260	104068260	T	G	ENSMUST00000213184.1	5	ENSMUSG00000110012	missense	K/T	257	Olfr644	ENSMUST00000213184.1:c.770A>C	ENSMUSP00000149070.1:p.Lys257Thr	H-2-Kb	9	3	9	AVLIFYVPT	AVLIFYVPK	SMMPMBEC	146.302	443.864	3.034	247	0.198	259.977	1408.126	5.416	2238.01	335.83	4724.6	975.8	578.2424886	184.1238299	443.8640791	146.3019114	M4_p20	1.671428571	2.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.206	247	0	0	NA	7qE3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	55933103	55933103	G	A	ENSMUST00000119201.7	1	ENSMUSG00000030452	missense	A/V	298	Nipa2	ENSMUST00000119201.7:c.893C>T	ENSMUSP00000114020.1:p.Ala298Val	H-2-Kb	9	3	9	IVGIFLLHV	IVGIFLLHA	SMMPMBEC	293.934	1014.495	3.451	166	0.271	319.481	1799.346	5.632	2393.35	336.89	4122.3	831.1	1205.341196	302.0716724	1014.495208	293.9341186	M4_p20	2.214285714	3.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.252	166	0	0	NA	7qB5	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	108317521	108317521	T	C	ENSMUST00000214605.1	2	ENSMUSG00000094612	missense	V/A	209	Olfr491	ENSMUST00000214605.1:c.626T>C	ENSMUSP00000150694.1:p.Val209Ala	H-2-Kb	9	10	2	VATVFVISV	VVTVFVISV	NetMHC	342.27	467.62	1.366	614	0.239	395.11	553.012	1.4	467.62	342.27	735.6	356.6	487.6519891	433.6206938	618.3722614	534.872168	M4_p20	2.628571429	3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.241	614	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	104916819	104916819	A	G	ENSMUST00000217177.1	5	ENSMUSG00000056782	missense	L/P	159	Olfr667	ENSMUST00000217177.1:c.476T>C	ENSMUSP00000150340.1:p.Leu159Pro	H-2-Kb	9	7	5	VAFIPPFTF	VAFILPFTF	SMM	338.93	251.252	0.741	272	0.261	420.975	289.227	0.687	437.36	396.25	281.8	445.7	251.2522734	338.9299909	296.6538575	507.2826396	M4_p20	1.285714286	1.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.259	272	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	45897436	45897436	C	T	ENSMUST00000069772.15	1	ENSMUSG00000002781	missense	L/F	9	Tmem143	ENSMUST00000069772.15:c.25C>T	ENSMUSP00000070405.7:p.Leu9Phe	H-2-Kb	9	1	9	MTVARWLRF	MTVARWLRL	SMMPMBEC	346.937	200.563	0.578	66	0.136	447.198	172.436	0.386	144.31	476.98	90.6	447.6	264.9171047	446.7967444	200.5626226	346.9365057	M4_p20	0.385714286	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.158	66	0	0	NA	7qB3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.864474718	sgMsh2	cell line
chr7	81348426	81348426	T	A	ENSMUST00000178892.2	1	ENSMUSG00000025586	missense	Y/F	535	Cpeb1	ENSMUST00000178892.2:c.1604A>T	ENSMUSP00000137079.1:p.Tyr535Phe	H-2-Kb	9	7	5	VCFKFFCRS	VCFKYFCRS	SMM	96.407	118.607	1.23	71	0.282	202.811	222.153	1.095	822.05	618.66	325.7	298.9	118.6069123	96.40731774	113.5664369	106.721028	M4_p20	0.242857143	1.957142857	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.291	71	0	0	NA	7qD3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	7049114	7049114	A	C	ENSMUST00000140466.7	5	ENSMUSG00000047193	missense	L/R	3262	Dync2h1	ENSMUST00000140466.7:c.9785T>G	ENSMUSP00000120007.1:p.Leu3262Arg	H-2-Db	9	11	1	RSIENALVI	LSIENALVI	NetMHC	7.9	18.47	2.338	254	0.22	24.087	39.344	1.633	18.47	7.9	18.9	10.8	59.78882245	37.37833913	62.45540084	37.37403604	M4_p20	1.685714286	1.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.232	254	0	0	NA	9qA1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr8	112733443	112733443	G	A	ENSMUST00000034225.6	1	ENSMUSG00000031772	missense	V/I	143	Cntnap4	ENSMUST00000034225.6:c.427G>A	ENSMUSP00000034225.6:p.Val143Ile	H-2-Db	9	3	9	SGNANADSI	SGNANADSV	NetMHC	30.65	89.53	2.921	200	0.2	89.901	211.709	2.355	89.53	30.65	154.5	66.4	268.9180789	113.4018136	286.7939596	115.2311776	M4_p20	-0.457142857	-0.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	200	0	0	NA	8qE1	chr8-92827332-129138455	6	3	3	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr8	53599412	53599412	T	C	ENSMUST00000047768.10	1	ENSMUSG00000039396	missense	T/A	384	Neil3	ENSMUST00000047768.10:c.1150A>G	ENSMUSP00000041909.4:p.Thr384Ala	H-2-Db	9	11	1	AAFGNTTLV	TAFGNTTLV	NetMHCpan	49.8	91	1.827	336	0.25	83.455	163.124	1.955	166.45	70.39	91	49.8	178.4925113	96.52059712	159.7975071	99.90103784	M4_p20	0.785714286	0.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.257	336	0	0	NA	8qB1.3	chr8-3154030-92679113	6	3	3	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr8	13576361	13576361	T	C	ENSMUST00000117551.3	1	ENSMUSG00000031453	missense	M/V	741	Rasa3	ENSMUST00000117551.3:c.2221A>G	ENSMUSP00000112998.2:p.Met741Val	H-2-Db	9	4	8	YSLFNLYVG	YSLFNLYMG	NetMHC	87.93	363.82	4.138	186	0.172	182.548	418.279	2.291	363.82	87.93	556	201.2	472.737441	298.2771604	313.0184957	163.896621	M4_p20	1.342857143	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.198	186	0	0	NA	8qA1.1	chr8-3154030-92679113	6	3	3	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr8	109551631	109551631	C	T	ENSMUST00000042601.8	1	ENSMUSG00000037993	missense	D/N	1138	Dhx38	ENSMUST00000042601.8:c.3412G>A	ENSMUSP00000047865.7:p.Asp1138Asn	H-2-Db	9	7	5	VTAVNGEWL	VTAVDGEWL	NetMHC	127.35	8821.39	69.269	226	0.208	384.136	9938.338	25.872	8821.39	127.35	6722.3	173.2	12723.89276	660.1156057	11055.28645	595.0726634	M4_p20	0.214285714	0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.214	226	0	0	NA	8qD3	chr8-92827332-129138455	6	3	3	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr8	112733443	112733443	G	A	ENSMUST00000034225.6	1	ENSMUSG00000031772	missense	V/I	143	Cntnap4	ENSMUST00000034225.6:c.427G>A	ENSMUSP00000034225.6:p.Val143Ile	H-2-Kb	8	9	3	DSIVYYRL	DSVVYYRL	NetMHC	42.65	105.06	2.463	200	0.2	52.343	101.814	1.945	105.06	42.65	264	129.3	97.66523514	51.13755976	98.56892043	53.5475987	M4_p20	0.657142857	0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	200	0	0	NA	8qE1	chr8-92827332-129138455	6	3	3	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr8	56110553	56110553	A	G	ENSMUST00000000275.8	1	ENSMUSG00000038257	missense	K/R	361	Glra3	ENSMUST00000000275.8:c.1082A>G	ENSMUSP00000000275.7:p.Lys361Arg	H-2-Kb	8	6	6	VSRQHREL	VSRQHKEL	SMM	69.621	143.794	2.065	313	0.185	100.959	250.036	2.477	322.76	105.37	1502.7	872.9	143.7937467	69.6209588	177.3127641	96.54727043	M4_p20	-2.314285714	-2.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.182	313	0	0	NA	8qB2	chr8-3154030-92679113	6	3	3	0.9	4.924223078	RARE KARYOTYPE	1	0.995787333	sgMsh2	cell line
chr8	124028933	124028933	T	C	ENSMUST00000034457.8	1	ENSMUSG00000031976	missense	Y/H	460	Urb2	ENSMUST00000034457.8:c.1378T>C	ENSMUSP00000034457.8:p.Tyr460His	H-2-Kb	8	7	5	VFQTHAKL	VFQTYAKL	SMM	70.915	18.312	0.258	257	0.171	106.19	20.473	0.193	16.15	114.49	51	301.1	18.31217795	70.91530907	22.63288934	97.89037676	M4_p20	-0.414285714	-0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.173	257	0	0	NA	8qE2	chr8-92827332-129138455	6	3	3	0.9	4.924223078	RARE KARYOTYPE	1	0.946545103	sgMsh2	cell line
chr8	13781433	13781433	TA	T	ENSMUST00000043962.8	1	ENSMUSG00000038416	FS	L/X	555	Cdc16	ENSMUST00000043962.8:c.1670del	ENSMUSP00000047950.8:p.Asn557ThrfsTer14	H-2-Kb	8	13	1	TSFRLHGI	NA	NetMHCpan	62.1	NA	NA	156	0.154	150.262	NA	NA	NA	156.73	NA	62.1	NA	169.3323751	NA	143.7937467	M4_p20	0.314285714	0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.164	156	0	0	NA	8qA1.1	chr8-3154030-92679113	6	3	3	0.9	4.924223078	RARE KARYOTYPE	1	0.897302872	sgMsh2	cell line
chr8	105878842	105878842	T	C	ENSMUST00000008594.8	1	ENSMUSG00000008450	missense	F/S	103	Nutf2	ENSMUST00000008594.8:c.308T>C	ENSMUSP00000008594.7:p.Phe103Ser	H-2-Kb	8	5	7	MGFHQMSL	MGFHQMFL	NetMHCpan	61.8	73.9	1.196	261	0.284	150.906	134.413	0.891	345.7	271.66	73.9	61.8	105.6185011	124.0909187	163.2074578	177.7215122	M4_p20	0.085714286	0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.274	261	0	0	NA	8qD3	chr8-92827332-129138455	6	3	3	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr8	83725234	83725234	A	G	ENSMUST00000075843.12	1	ENSMUSG00000002885	missense	M/T	563	Adgre5	ENSMUST00000075843.12:c.1688T>C	ENSMUSP00000075240.6:p.Met563Thr	H-2-Kb	8	7	5	SSRTTVHL	SSRTMVHL	SMMPMBEC	310.27	134.196	0.433	244	0.234	344.132	130.589	0.379	73.79	367.09	280.6	1261.9	126.9813676	321.1737185	134.1961326	310.2701531	M4_p20	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.231	244	0	0	NA	8qC2	chr8-3154030-92679113	6	3	3	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr8	71634633	71634633	T	C	ENSMUST00000030170.14	5	ENSMUSG00000034799	missense	K/R	1490	Unc13a	ENSMUST00000030170.14:c.4469A>G	ENSMUSP00000030170.8:p.Lys1490Arg	H-2-Kb	8	8	4	VGLRKTFL	VGLKKTFL	SMMPMBEC	402.476	734.074	1.824	76	0.171	407.747	785.537	1.927	988.36	411.16	837	511.7	732.3859428	404.3337559	734.0742668	402.476011	M4_p20	0.128571429	0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.18	76	0	0	NA	8qB3.3	chr8-3154030-92679113	6	3	3	0.9	4.924223078	RARE KARYOTYPE	1	0.984844616	sgMsh2	cell line
chr8	124028933	124028933	T	C	ENSMUST00000034457.8	1	ENSMUSG00000031976	missense	Y/H	460	Urb2	ENSMUST00000034457.8:c.1378T>C	ENSMUSP00000034457.8:p.Tyr460His	H-2-Kb	9	6	6	TVFQTHAKL	TVFQTYAKL	NetMHC	42.12	10.72	0.255	257	0.171	141.749	43.932	0.31	10.72	42.12	14.2	48.4	86.71814915	303.4659719	73.66310144	235.0985768	M4_p20	-0.414285714	0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.173	257	0	0	NA	8qE2	chr8-92827332-129138455	6	3	3	0.9	4.924223078	RARE KARYOTYPE	1	0.946545103	sgMsh2	cell line
chr8	109551631	109551631	C	T	ENSMUST00000042601.8	1	ENSMUSG00000037993	missense	D/N	1138	Dhx38	ENSMUST00000042601.8:c.3412G>A	ENSMUSP00000047865.7:p.Asp1138Asn	H-2-Kb	9	10	2	VNGEWLAEL	VDGEWLAEL	NetMHC	116.53	3630.39	31.154	226	0.208	130.917	2132.941	16.292	3630.39	116.53	5738.1	292.5	635.4918716	125.9244318	562.6651281	135.909558	M4_p20	0.157142857	0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.214	226	0	0	NA	8qD3	chr8-92827332-129138455	6	3	3	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr8	105878842	105878842	T	C	ENSMUST00000008594.8	1	ENSMUSG00000008450	missense	F/S	103	Nutf2	ENSMUST00000008594.8:c.308T>C	ENSMUSP00000008594.7:p.Phe103Ser	H-2-Kb	9	4	8	IMGFHQMSL	IMGFHQMFL	SMMPMBEC	166.437	225.554	1.355	261	0.284	175.497	253.816	1.446	305.48	177.57	275.3	221.2	232.3325184	173.4243199	225.553723	166.4370463	M4_p20	0.085714286	0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.274	261	0	0	NA	8qD3	chr8-92827332-129138455	6	3	3	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr8	85009334	85009334	C	T	ENSMUST00000209421.1	1	ENSMUSG00000052819	missense	E/K	324	Best2	ENSMUST00000209421.1:c.970G>A	ENSMUSP00000147837.1:p.Glu324Lys	H-2-Kb	9	11	1	KMYDDLAML	EMYDDLAML	SMM	165.238	448.859	2.716	371	0.278	180.536	893.065	4.947	1337.27	195.78	1855.1	268.9	448.8590645	165.2380267	375.1889162	165.2913018	M4_p20	0.428571429	0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.281	371	0	0	NA	8qC3	chr8-3154030-92679113	6	3	3	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr8	112733443	112733443	G	A	ENSMUST00000034225.6	1	ENSMUSG00000031772	missense	V/I	143	Cntnap4	ENSMUST00000034225.6:c.427G>A	ENSMUSP00000034225.6:p.Val143Ile	H-2-Kb	9	11	1	IVYYRLQPS	VVYYRLQPS	SMM	49.444	33.582	0.679	200	0.2	141.69	112.225	0.792	164.02	203.35	391.7	409.6	33.58226621	49.4435904	60.42963902	80.02948092	M4_p20	-1.314285714	0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	200	0	0	NA	8qE1	chr8-92827332-129138455	6	3	3	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr8	105878842	105878842	T	C	ENSMUST00000008594.8	1	ENSMUSG00000008450	missense	F/S	103	Nutf2	ENSMUST00000008594.8:c.308T>C	ENSMUSP00000008594.7:p.Phe103Ser	H-2-Kb	9	5	7	MGFHQMSLL	MGFHQMFLL	NetMHCpan	61.9	85	1.373	261	0.284	289.966	372.137	1.283	284.96	204	85	61.9	459.3143352	375.9326101	492.3228579	387.4806325	M4_p20	0.685714286	0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.274	261	0	0	NA	8qD3	chr8-92827332-129138455	6	3	3	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr8	56110553	56110553	A	G	ENSMUST00000000275.8	1	ENSMUSG00000038257	missense	K/R	361	Glra3	ENSMUST00000000275.8:c.1082A>G	ENSMUSP00000000275.7:p.Lys361Arg	H-2-Kb	9	6	6	VSRQHRELL	VSRQHKELL	SMM	223.414	253.577	1.135	313	0.185	294.719	447.137	1.517	629.88	360.22	1230.8	842.1	253.577082	223.4138023	264.3930288	229.2186762	M4_p20	-1.657142857	-1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.182	313	0	0	NA	8qB2	chr8-3154030-92679113	6	3	3	0.9	4.924223078	RARE KARYOTYPE	1	0.995787333	sgMsh2	cell line
chr8	105178615	105178615	A	T	ENSMUST00000052209.8	1	ENSMUSG00000031885	missense	N/I	63	Cbfb	ENSMUST00000052209.8:c.188A>T	ENSMUSP00000059382.2:p.Asn63Ile	H-2-Kb	9	3	9	IAFVATGTI	IAFVATGTN	NetMHCpan	147.4	7924.2	53.76	166	0.187	476.809	5159.061	10.82	13674.64	401.4	7924.2	147.4	2393.922023	552.2172896	1762.990613	624.0939895	M4_p20	1.642857143	2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.18	166	0	0	NA	8qD3	chr8-92827332-129138455	6	3	3	0.9	4.924223078	RARE KARYOTYPE	1	0.984844616	sgMsh2	cell line
chr9	38607056	38607056	T	C	ENSMUST00000217057.1	3	ENSMUSG00000047050	missense	I/T	197	Olfr914	ENSMUST00000217057.1:c.590T>C	ENSMUSP00000150241.1:p.Ile197Thr	H-2-Db	9	5	7	STYVNETEL	STYVNEIEL	NetMHCpan	35.5	65.5	1.845	650	0.235	54.85	115.024	2.097	136.63	55.92	65.5	35.5	111.588644	53.7799012	118.4595286	58.69079604	M4_p20	-0.642857143	-0.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.236	650	0	0	NA	9qA5.1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	100855832	100855832	A	T	ENSMUST00000129269.7	1	ENSMUSG00000037286	missense	E/V	414	Stag1	ENSMUST00000129269.7:c.1241A>T	ENSMUSP00000116205.1:p.Glu414Val	H-2-Db	9	3	9	EALSNEDCV	EALSNEDCE	NetMHC	162.17	20754.53	127.98	368	0.168	364.555	11513.819	31.583	20754.53	162.17	29954.3	951.5	2273.107631	411.7370988	1269.316718	317.3730167	M4_p20	-0.114285714	-0.114285714	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.161	368	0	0	NA	9qE3.3	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.880888795	sgMsh2	cell line
chr9	39144108	39144108	G	A	ENSMUST00000216405.1	5	ENSMUSG00000049708	missense	A/T	3	Olfr27	ENSMUST00000216405.1:c.7G>A	ENSMUSP00000150009.1:p.Ala3Thr	H-2-Db	9	1	3	MATGNRCTV	MAAGNRCTV	SMMPMBEC	252.098	286.794	1.138	116	0.241	360.562	305.425	0.847	348.89	471.02	205.9	405.9	324.05595	315.2245257	286.7939596	252.0983481	M4_p20	-0.442857143	-0.414285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	116	0	0	NA	9qA5.1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	38607351	38607351	A	C	ENSMUST00000217057.1	3	ENSMUSG00000047050	missense	K/N	295	Olfr914	ENSMUST00000217057.1:c.885A>C	ENSMUSP00000150241.1:p.Lys295Asn	H-2-Db	9	6	6	YSLRNNDVK	YSLRNKDVK	SMMPMBEC	177.243	164.274	0.927	207	0.304	463.21	389.992	0.842	593.51	729.35	3742.6	2991.1	186.4747356	197.0697656	164.2744417	177.2433705	M4_p20	-1.557142857	-1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.298	207	0	0	NA	9qA5.1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr9	39019219	39019219	CA	C	ENSMUST00000214410.1	5	ENSMUSG00000058820	FS	F/X	107	Olfr146	ENSMUST00000214410.1:c.321del	ENSMUSP00000149294.1:p.Phe107LeufsTer40	H-2-Kb	8	9	3	VILLFQKV	NA	NetMHC	16.44	NA	NA	522	0.222	50.751	NA	NA	NA	16.44	NA	48.2	NA	53.30156983	NA	63.0579721	M4_p20	1.671428571	1.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.217	522	0	0	NA	9qA5.1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	53398017	53398017	T	C	ENSMUST00000037853.4	1	ENSMUSG00000034487	missense	V/A	460	Poglut3	ENSMUST00000037853.4:c.1379T>C	ENSMUSP00000039313.3:p.Val460Ala	H-2-Kb	8	5	7	YCYYYRAL	YCYYYRVL	NetMHC	25.06	147.28	5.877	104	0.212	36.513	113.658	3.113	147.28	25.06	59.7	29.2	128.7478543	54.66885777	98.56892043	43.82682402	M4_p20	-0.042857143	-0.042857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	104	0	0	NA	9qA5.3	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	106155782	106155782	A	G	ENSMUST00000036382.12	1	ENSMUSG00000020258	missense	V/A	344	Glyctk	ENSMUST00000036382.12:c.1031T>C	ENSMUSP00000047761.6:p.Val344Ala	H-2-Kb	8	10	2	RAARFYGL	RVARFYGL	NetMHCpan	27.8	30.5	1.097	70	0.186	63.802	70.784	1.109	50	37.5	30.5	27.8	91.56721386	90.10315536	110.8510982	119.8781411	M4_p20	0.571428571	0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.212	70	0	0	NA	9qF1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	39623870	39623870	T	C	ENSMUST00000077060.2	NA	ENSMUSG00000059867	missense	M/T	249	Olfr960	ENSMUST00000077060.2:c.746T>C	ENSMUSP00000076315.2:p.Met249Thr	H-2-Kb	8	10	2	ITCVYGPV	IMCVYGPV	SMMPMBEC	28.428	51.138	1.799	542	0.268	37.403	59.043	1.579	46.41	37.93	255.1	146	66.94836882	36.87567681	51.13755976	28.42758718	M4_p20	0.985714286	1.028571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.269	542	0	0	NA	9qA5.1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr9	106155782	106155782	A	G	ENSMUST00000036382.12	1	ENSMUSG00000020258	missense	V/A	344	Glyctk	ENSMUST00000036382.12:c.1031T>C	ENSMUSP00000047761.6:p.Val344Ala	H-2-Kb	8	11	1	AARFYGLL	VARFYGLL	NetMHCpan	46.2	13.4	0.29	70	0.186	94.506	24.316	0.257	14.69	61.15	13.4	46.2	33.94220093	127.8615603	42.43654321	145.4587999	M4_p20	0.857142857	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.212	70	0	0	NA	9qF1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	39258136	39258136	A	C	ENSMUST00000076903.2	NA	ENSMUSG00000063380	missense	C/G	182	Olfr945	ENSMUST00000076903.2:c.544T>G	ENSMUSP00000076169.2:p.Cys182Gly	H-2-Kb	8	6	6	INHYFGDI	INHYFCDI	NetMHCpan	102	90.9	0.891	314	0.5	276.289	313.213	1.134	217.41	182.12	90.9	102	466.380088	456.8146256	409.0157201	370.458872	M4_p20	-0.657142857	-0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.477	314	0	0	NA	9qA5.1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	3	1	sgMsh2	cell line
chr9	38848204	38848204	C	T	ENSMUST00000217350.1	5	ENSMUSG00000062103	missense	A/V	30	Olfr924	ENSMUST00000217350.1:c.89C>T	ENSMUSP00000149849.1:p.Ala30Val	H-2-Kb	8	11	1	VIYVITVV	AIYVITVV	NetMHC	202.6	1252.59	6.183	433	0.266	217.935	913.276	4.191	1252.59	202.6	849.9	203.2	976.6523514	259.2626764	797.5170931	232.6697911	M4_p20	2.8	2.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.263	433	0	0	NA	9qA5.1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr9	39018999	39018999	G	T	ENSMUST00000214410.1	5	ENSMUSG00000058820	missense	L/I	181	Olfr146	ENSMUST00000214410.1:c.541C>A	ENSMUSP00000149294.1:p.Leu181Ile	H-2-Kb	8	4	8	INHYFCDI	INHYFCDL	NetMHCpan	90.9	29.4	0.323	294	0.197	313.213	50.321	0.161	26.98	217.41	29.4	90.9	71.90183929	466.380088	71.24263926	409.0157201	M4_p20	-0.242857143	-0.242857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.201	294	0	0	NA	9qA5.1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	49416677	49416677	C	T	ENSMUST00000034792.6	1	ENSMUSG00000032257	missense	A/T	401	Ankk1	ENSMUST00000034792.6:c.1201G>A	ENSMUSP00000034792.5:p.Ala401Thr	H-2-Kb	8	10	2	TTSGYTPL	TASGYTPL	SMMPMBEC	199.866	316.039	1.581	59	0.271	215.893	301.369	1.396	220.72	218.61	286.7	284.2	329.4124431	213.1768301	316.0385059	199.8664966	M4_p20	-0.242857143	-0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.255	59	0	0	NA	9qA5.3	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	108052065	108052065	A	G	ENSMUST00000162355.7	1	ENSMUSG00000041528	missense	V/A	1271	Rnf123	ENSMUST00000162355.7:c.3812T>C	ENSMUSP00000125745.1:p.Val1271Ala	H-2-Kb	8	8	4	ISAAFQPC	ISAVFQPC	SMM	176.092	168.943	0.959	206	0.209	417.672	294.935	0.706	357.2	561.35	396.1	585.7	168.9429215	176.0921516	232.6697911	273.9933359	M4_p20	0.428571429	0.714285714	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.199	206	0	0	NA	9qF1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	42330269	42330269	T	A	ENSMUST00000042190.13	1	ENSMUSG00000037705	missense	I/F	2142	Tecta	ENSMUST00000042190.13:c.6424A>T	ENSMUSP00000040262.7:p.Ile2142Phe	H-2-Kb	8	9	3	TQFSLWHL	TQISLWHL	NetMHCpan	151	731.1	4.842	213	0.211	192.066	921.794	4.799	5003.33	1117.71	731.1	151	961.0367602	198.0341096	882.5513833	186.0972691	M4_p20	0.285714286	0.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.217	213	0	0	NA	9qA5.1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	39942613	39942613	A	G	ENSMUST00000213246.2	2	ENSMUSG00000051493	missense	M/V	118	Olfr974	ENSMUST00000213246.2:c.352A>G	ENSMUSP00000149630.1:p.Met118Val	H-2-Kb	9	11	1	VAYDRYVAI	MAYDRYVAI	NetMHCpan	8.8	14.4	1.636	273	0.19	13.88	30.259	2.18	27.08	14.84	14.4	8.8	39.27443988	15.31475311	33.43874735	12.91962773	M4_p20	-0.014285714	-0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.19	273	0	0	NA	9qA5.1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	106155782	106155782	A	G	ENSMUST00000036382.12	1	ENSMUSG00000020258	missense	V/A	344	Glyctk	ENSMUST00000036382.12:c.1031T>C	ENSMUSP00000047761.6:p.Val344Ala	H-2-Kb	9	10	2	RAARFYGLL	RVARFYGLL	NetMHC	16.87	23.3	1.381	70	0.186	71.279	81.97	1.15	23.3	16.87	21.8	17.5	140.6403699	125.0575741	181.6561058	157.1267038	M4_p20	0.857142857	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.212	70	0	0	NA	9qF1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	41969739	41969739	T	G	ENSMUST00000060989.8	1	ENSMUSG00000049313	missense	K/T	2162	Sorl1	ENSMUST00000060989.8:c.6485A>C	ENSMUSP00000058613.8:p.Lys2162Thr	H-2-Kb	9	7	5	ILYTTHRRL	ILYTKHRRL	NetMHCpan	38.5	39.5	1.026	65	0.246	207.103	89.609	0.433	28.42	39.88	39.5	38.5	191.9154771	390.9399022	139.7172407	374.3260056	M4_p20	-1.585714286	-0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.295	65	0	0	NA	9qA5.1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr9	39078200	39078200	A	G	ENSMUST00000056499.3	NA	ENSMUSG00000048501	missense	F/L	182	Olfr938	ENSMUST00000056499.3:c.544T>C	ENSMUSP00000055053.2:p.Phe182Leu	H-2-Kb	9	3	9	INHYFCDLL	INHYFCDLF	NetMHC	40.99	129.13	3.15	232	0.203	94.887	238.502	2.514	129.13	40.99	365.4	57	223.9288243	132.7730709	253.0754397	146.3019114	M4_p20	0.7	0.7	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.217	232	0	0	NA	9qA5.1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	71725634	71725634	T	G	ENSMUST00000072899.8	5	ENSMUSG00000032232	missense	N/T	145	Cgnl1	ENSMUST00000072899.8:c.434A>C	ENSMUSP00000072672.2:p.Asn145Thr	H-2-Kb	9	10	2	LTFQRHPEL	LNFQRHPEL	NetMHCpan	36.8	28.1	0.764	94	0.16	90.799	70.924	0.781	73.26	81.31	28.1	36.8	84.74420308	133.0791444	68.58829388	100.2882377	M4_p20	-1.385714286	-0.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.183	94	0	0	NA	9qD	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	40001162	40001162	C	T	ENSMUST00000215523.1	5	ENSMUSG00000059473	missense	D/N	22	Olfr979	ENSMUST00000215523.1:c.64G>A	ENSMUSP00000148903.1:p.Asp22Asn	H-2-Kb	9	11	1	NTMLFVAFL	DTMLFVAFL	NetMHCpan	93.8	277.5	2.958	438	0.208	466.936	583.516	1.25	361.45	137.51	277.5	93.8	805.5824568	796.3610307	982.3132453	805.8421878	M4_p20	3.014285714	3.014285714	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.209	438	0	0	NA	9qA5.1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	38607056	38607056	T	C	ENSMUST00000217057.1	3	ENSMUSG00000047050	missense	I/T	197	Olfr914	ENSMUST00000217057.1:c.590T>C	ENSMUSP00000150241.1:p.Ile197Thr	H-2-Kb	9	5	7	STYVNETEL	STYVNEIEL	SMM	142.926	151.046	1.057	650	0.235	174.668	183.971	1.053	124.94	151.98	290.4	242.7	151.0462682	142.9255921	216.8952295	197.3558481	M4_p20	-0.642857143	-0.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.236	650	0	0	NA	9qA5.1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	53398017	53398017	T	C	ENSMUST00000037853.4	1	ENSMUSG00000034487	missense	V/A	460	Poglut3	ENSMUST00000037853.4:c.1379T>C	ENSMUSP00000039313.3:p.Val460Ala	H-2-Kb	9	4	8	LYCYYYRAL	LYCYYYRVL	SMMPMBEC	171.1	211.958	1.239	104	0.212	208.176	424.006	2.037	572.85	175.3	508.3	300.4	339.7113053	241.0515897	211.9580913	171.0999962	M4_p20	-0.042857143	-0.042857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	104	0	0	NA	9qA5.3	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	39258136	39258136	A	C	ENSMUST00000076903.2	NA	ENSMUSG00000063380	missense	C/G	182	Olfr945	ENSMUST00000076903.2:c.544T>G	ENSMUSP00000076169.2:p.Cys182Gly	H-2-Kb	9	5	7	VINHYFGDI	VINHYFCDI	NetMHC	248.12	402.57	1.622	314	0.5	313.678	336.411	1.072	402.57	248.12	262.7	378.9	382.9217191	379.4110717	289.9011913	248.4562923	M4_p20	-0.657142857	0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.477	314	0	0	NA	9qA5.1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	3	1	sgMsh2	cell line
chr9	39258136	39258136	A	C	ENSMUST00000076903.2	NA	ENSMUSG00000063380	missense	C/G	182	Olfr945	ENSMUST00000076903.2:c.544T>G	ENSMUSP00000076169.2:p.Cys182Gly	H-2-Kb	9	6	6	INHYFGDIL	INHYFCDIL	NetMHCpan	249.4	114.5	0.459	314	0.5	350.747	161.261	0.46	107.57	280.66	114.5	249.4	208.0223508	420.8332054	225.553723	456.2995075	M4_p20	0.385714286	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.477	314	0	0	NA	9qA5.1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	3	1	sgMsh2	cell line
chr9	39019219	39019219	CA	C	ENSMUST00000214410.1	5	ENSMUSG00000058820	FS	F/X	107	Olfr146	ENSMUST00000214410.1:c.321del	ENSMUSP00000149294.1:p.Phe107LeufsTer40	H-2-Kb	9	3	9	TQLCFFVIL	TQLCFFVIF	NetMHCpan	135.7	1006.2	7.415	522	0.222	195.43	632.783	3.238	923.5	284.8	1006.2	135.7	342.0660715	202.8196365	325.2744865	188.039895	M4_p20	3.485714286	3.485714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.217	522	0	0	NA	9qA5.1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	39018999	39018999	G	T	ENSMUST00000214410.1	5	ENSMUSG00000058820	missense	L/I	181	Olfr146	ENSMUST00000214410.1:c.541C>A	ENSMUSP00000149294.1:p.Leu181Ile	H-2-Kb	9	4	8	INHYFCDII	INHYFCDLI	NetMHC	329.69	127.26	0.386	294	0.197	436.374	256.697	0.588	127.26	329.69	183.7	356.2	329.6932077	516.547186	338.259498	521.4948213	M4_p20	0.9	0.9	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.201	294	0	0	NA	9qA5.1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	59324811	59324811	A	G	ENSMUST00000026265.7	1	ENSMUSG00000025235	missense	V/A	362	Bbs4	ENSMUST00000026265.7:c.1085T>C	ENSMUSP00000026265.6:p.Val362Ala	H-2-Kb	9	8	4	RAYAEAVRL	RAYVEAVRL	NetMHCpan	175.4	120.3	0.686	223	0.242	497.9	316.494	0.636	232.02	361.77	120.3	175.4	400.9682638	634.0302809	528.7495369	724.853099	M4_p20	0.328571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.241	223	0	0	NA	9qB	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	43791318	43791318	A	G	ENSMUST00000034510.8	1	ENSMUSG00000032012	missense	M/V	121	Nectin1	ENSMUST00000034510.8:c.361A>G	ENSMUSP00000034510.7:p.Met121Val	H-2-Kb	9	11	1	VYICEFATF	MYICEFATF	SMM	270.464	693.601	2.564	117	0.231	347.49	830.945	2.391	915.58	403.74	908.1	406.8	693.6014622	270.4643321	753.7893549	291.2393144	M4_p20	1.457142857	1.571428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.234	117	0	0	NA	9qA5.1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	53398017	53398017	T	C	ENSMUST00000037853.4	1	ENSMUSG00000034487	missense	V/A	460	Poglut3	ENSMUST00000037853.4:c.1379T>C	ENSMUSP00000039313.3:p.Val460Ala	H-2-Kb	9	3	9	RLYCYYYRA	RLYCYYYRV	NetMHCpan	148.6	32.3	0.217	104	0.212	474.898	102.91	0.217	59.18	443.68	32.3	148.6	150.3522737	599.9430132	146.6391721	506.1159219	M4_p20	-0.771428571	-0.485714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	104	0	0	NA	9qA5.3	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	sgMsh2	cell line
chrX	79509993	79509993	A	C	ENSMUST00000197180.5	5	ENSMUSG00000073077	missense	I/S	292	Cfap47	ENSMUST00000197180.5:c.875T>G	ENSMUSP00000142707.2:p.Ile292Ser	H-2-Db	9	6	6	IAINNSSYL	IAINNISYL	NetMHCpan	6.6	6	0.909	25	0.16	15.753	12.492	0.793	6.38	6.81	6	6.6	18.60458556	24.69562376	19.97882763	27.96211387	M4_p20	-0.228571429	0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.221	25	0	0	NA	XqB	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chrX	133588496	133588496	A	G	ENSMUST00000149154.7	1	ENSMUSG00000051323	missense	M/T	977	Pcdh19	ENSMUST00000149154.7:c.2930T>C	ENSMUSP00000116886.1:p.Met977Thr	H-2-Db	9	5	7	WMPRNPTPT	WMPRNPMPT	NetMHC	233.44	1377.14	5.899	80	0.45	363.988	1119.682	3.076	1377.14	233.44	3001.1	2034.1	862.223787	394.1123099	717.0839465	333.8643134	M4_p20	-2.028571429	-1.557142857	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.461	80	0	0	NA	XqE3	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chrX	13665387	13665387	T	C	ENSMUST00000053659.1	1	ENSMUSG00000047678	missense	V/A	58	Gpr82	ENSMUST00000053659.1:c.173T>C	ENSMUSP00000062535.1:p.Val58Ala	H-2-Kb	8	8	4	ANLATANL	ANLVTANL	NetMHC	110.98	65.42	0.589	219	0.425	127.103	105.176	0.827	65.42	110.98	97.7	151.4	116.611129	121.5458122	112.6522836	132.6600022	M4_p20	0.5	0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.439	219	0	0	NA	XqA1.1	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chrX	23235418	23235418	A	G	ENSMUST00000115319.8	1	ENSMUSG00000036782	missense	Y/H	385	Klhl13	ENSMUST00000115319.8:c.1153T>C	ENSMUSP00000110974.2:p.Tyr385His	H-2-Kb	8	5	7	VIGNFLHV	VIGNFLYV	NetMHC	116.03	205.44	1.771	84	0.488	153.559	180.651	1.176	205.44	116.03	432.8	309.6	148.504632	155.5034397	155.8619122	151.6142424	M4_p20	1.171428571	1.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.506	84	0	0	NA	XqA2	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chrX	96462998	96462998	T	C	ENSMUST00000033553.13	1	ENSMUSG00000031209	missense	I/T	25	Heph	ENSMUST00000033553.13:c.74T>C	ENSMUSP00000033553.7:p.Ile25Thr	H-2-Kb	9	10	2	ATRNYYLGI	AIRNYYLGI	NetMHC	58.35	62.63	1.073	189	0.519	177.503	171.74	0.968	62.63	58.35	110	99	242.7224795	287.8127307	233.4801695	256.0059151	M4_p20	-0.385714286	-0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.532	189	0	0	NA	XqC3	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chrX	107399652	107399652	C	T	ENSMUST00000033591.5	1	ENSMUSG00000031239	missense	C/Y	53	Itm2a	ENSMUST00000033591.5:c.158G>A	ENSMUSP00000033591.5:p.Cys53Tyr	H-2-Kb	9	7	5	SSGRYMLTL	SSGRCMLTL	NetMHC	83.04	908.5	10.941	103	0.34	197.901	1000.871	5.057	908.5	83.04	2203.2	112.5	1089.205937	325.1696473	912.5359861	283.3022345	M4_p20	0.371428571	0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.323	103	0	0	NA	XqD	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chrX	79509993	79509993	A	C	ENSMUST00000197180.5	5	ENSMUSG00000073077	missense	I/S	292	Cfap47	ENSMUST00000197180.5:c.875T>G	ENSMUSP00000142707.2:p.Ile292Ser	H-2-Kb	9	6	6	IAINNSSYL	IAINNISYL	NetMHC	160.47	128.36	0.8	25	0.16	238.325	227.568	0.955	128.36	160.47	106.3	189.5	356.5414284	287.1507798	326.7758854	338.259498	M4_p20	-0.228571429	0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.221	25	0	0	NA	XqB	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chrX	86747655	86747655	G	A	ENSMUST00000113966.7	5	ENSMUSG00000052372	missense	P/S	560	Il1rapl1	ENSMUST00000113966.7:c.1678C>T	ENSMUSP00000109599.1:p.Pro560Ser	H-2-Kb	9	10	2	MSFKRIEPI	MPFKRIEPI	NetMHCpan	58.3	2180.6	37.403	80	0.525	177.366	2262.711	12.757	4631.31	173.91	2180.6	58.3	2344.822647	233.4049166	1946.480243	180.8214719	M4_p20	-0.242857143	-0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.516	80	0	0	NA	XqC1	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chrX	79295219	79295219	C	A	ENSMUST00000197180.5	5	ENSMUSG00000073077	missense	R/M	3058	Cfap47	ENSMUST00000197180.5:c.9173G>T	ENSMUSP00000142707.2:p.Arg3058Met	H-2-Kb	9	8	4	SQTMYYEPF	SQTRYYEPF	NetMHC	247.86	252.35	1.018	58	0.414	310.793	419.757	1.351	252.35	247.86	375.8	268.2	464.6329446	382.9217191	463.713778	353.3865369	M4_p20	-0.528571429	-0.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.461	58	0	0	NA	XqB	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chrX	107399652	107399652	C	T	ENSMUST00000033591.5	1	ENSMUSG00000031239	missense	C/Y	53	Itm2a	ENSMUST00000033591.5:c.158G>A	ENSMUSP00000033591.5:p.Cys53Tyr	H-2-Kb	9	8	4	SGRYMLTLL	SGRCMLTLL	NetMHC	257.32	587.14	2.282	103	0.34	388.256	645.309	1.662	587.14	257.32	780	370.9	561.1900987	405.6112574	703.4771574	560.0799166	M4_p20	0.971428571	0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.323	103	0	0	NA	XqD	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chrX	9849913	9849913	T	C	ENSMUST00000057113.2	NA	ENSMUSG00000048994	missense	S/P	55	H2al3	ENSMUST00000057113.2:c.163T>C	ENSMUSP00000052025.1:p.Ser55Pro	H-2-Kb	9	6	6	LNYVTPSIL	LNYVTSSIL	SMM	217.325	118.334	0.545	172	0.517	286.985	138.425	0.482	151.65	320.37	125.2	253.6	118.334124	217.325156	242.8007366	383.9281887	M4_p20	1.157142857	1.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.523	172	0	0	NA	XqA1.1	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chrX	101673545	101673545	GA	G	ENSMUST00000044475.4	1	ENSMUSG00000034160	FS	K/X	757	Ogt	ENSMUST00000044475.4:c.2271del	ENSMUSP00000045409.4:p.Lys757AsnfsTer23	H-2-Kb	9	22	0	VTQLLICPL	NA	NetMHCpan	324.4	NA	NA	81	0.494	478.008	NA	NA	NA	401.25	NA	324.4	NA	554.7662088	NA	602.9065471	M4_p20	1.9	2.085714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.545	81	0	0	NA	XqD	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr1	38821218	38821218	T	C	ENSMUST00000147695.8	5	ENSMUSG00000048814	missense	T/A	236	Lonrf2	ENSMUST00000147695.8:c.706A>G	ENSMUSP00000117600.2:p.Thr236Ala	H-2-Db	9	10	2	LAMKNYDQA	LTMKNYDQA	NetMHCpan	117.2	975.6	8.324	123	0.447	127.134	943.407	7.421	2610.73	117.63	975.6	117.2	911.213195	140.1586804	780.8542888	136.6375292	M4	-1.714285714	-0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.436	123	0	0	NA	1qB	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	2	1	sgMsh2	cell line
chr1	132527752	132527752	TG	T	ENSMUST00000086521.10	1	ENSMUSG00000053024	FS	P/X	249	Cntn2	ENSMUST00000086521.10:c.746del	ENSMUSP00000083707.4:p.Pro249GlnfsTer84	H-2-Db	9	60	0	LALKMRVPM	NA	SMMPMBEC	116.834	NA	NA	65	0.2	148.131	NA	NA	NA	162.72	NA	189.2	NA	133.5426531	NA	116.8342029	M4	0.257142857	1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.217	65	0	0	NA	1qE4	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.959877739	sgMsh2	cell line
chr1	85579187	85579187	CT	C	ENSMUST00000093508.6	1	ENSMUSG00000070034	FS	K/X	385	Sp110	ENSMUST00000093508.6:c.1154del	ENSMUSP00000091226.6:p.Lys385SerfsTer13	H-2-Db	9	11	1	SAFRMRQEI	NA	SMMPMBEC	212.114	NA	NA	100	0.28	246.936	NA	NA	NA	356.88	NA	263.4	NA	230.4729708	NA	212.1143253	M4	-0.971428571	-0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.274	100	0	0	NA	1qC5	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	2	1	sgMsh2	cell line
chr1	88230773	88230773	C	A	ENSMUST00000113130.7	5	ENSMUSG00000079429	missense	L/M	181	Mroh2a	ENSMUST00000113130.7:c.541C>A	ENSMUSP00000108755.1:p.Leu181Met	H-2-Db	9	11	1	MANGNVFEF	LANGNVFEF	SMMPMBEC	303.788	456.636	1.503	377	0.053	353.297	628.156	1.778	3793.75	2319.97	743.9	307	512.4128356	399.5949582	456.6358453	303.78757	M4	-0.157142857	0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.055	377	0	0	NA	1qD	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.243286985	sgMsh2	cell line
chr1	111861881	111861881	C	CA	ENSMUST00000035462.6	1	ENSMUSG00000038702	FS	W/LX	308	Dsel	ENSMUST00000035462.6:c.922dup	ENSMUSP00000043570.5:p.Trp308LeufsTer23	H-2-Kb	8	14	0	LCYTFARL	NA	NetMHC	4.59	NA	NA	139	0.309	6.92	NA	NA	NA	4.59	NA	7.9	NA	9.948096742	NA	5.939364789	M4	0.628571429	0.628571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.311	139	0	0	NA	1qE2.1	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	2	1	sgMsh2	cell line
chr1	127412243	127412243	G	T	ENSMUST00000038361.10	1	ENSMUSG00000036155	missense	V/L	454	Mgat5	ENSMUST00000038361.10:c.1360G>T	ENSMUSP00000038359.4:p.Val454Leu	H-2-Kb	8	4	8	QSLVYGKL	QSLVYGKV	NetMHC	15.26	75.8	4.967	144	0.167	52.362	246.565	4.709	75.8	15.26	265.7	39.6	232.6697911	65.12383991	260.4593785	71.90183929	M4	0.771428571	0.771428571	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.167	144	136	19	0.139705882	1qE3	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.738707753	sgMsh2	cell line
chr1	128364313	128364313	A	G	ENSMUST00000027602.14	1	ENSMUSG00000026356	missense	V/A	476	Dars	ENSMUST00000027602.14:c.1427T>C	ENSMUSP00000027602.8:p.Val476Ala	H-2-Kb	8	11	1	ATMLFLGL	VTMLFLGL	NetMHCpan	13.4	5.5	0.41	102	0.245	28.635	8.869	0.31	5.27	15.32	5.5	13.4	14.47904774	54.54312289	12.23883275	41.95077612	M4	2.142857143	2.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	102	252	49	0.194444444	1qE3	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr1	84912361	84912361	C	A	ENSMUST00000027422.6	1	ENSMUSG00000026220	missense	A/S	408	Slc16a14	ENSMUST00000027422.6:c.1222G>T	ENSMUSP00000027422.5:p.Ala408Ser	H-2-Kb	8	6	6	LMHTYSSL	LMHTYASL	NetMHC	32.78	13.28	0.405	83	0.193	74.006	33.853	0.457	13.28	32.78	20.2	35.1	63.64144033	143.7937467	47.50507412	112.911974	M4	-0.157142857	-0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.201	83	0	0	NA	1qC5	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.889103343	sgMsh2	cell line
chr1	152855898	152855898	T	C	ENSMUST00000043560.14	1	ENSMUSG00000042772	missense	R/G	379	Smg7	ENSMUST00000043560.14:c.1135A>G	ENSMUSP00000041241.8:p.Arg379Gly	H-2-Kb	8	5	7	VSMDWLGL	VSMDWLRL	NetMHCpan	34.7	24.7	0.712	189	0.217	70.049	45.03	0.643	38.45	50.82	24.7	34.7	69.30107956	116.611129	51.61072977	89.27708467	M4	0.557142857	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.211	189	76	22	0.289473684	1qG3	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.933337341	sgMsh2	cell line
chr1	132014588	132014588	A	G	ENSMUST00000086556.11	1	ENSMUSG00000026436	missense	Y/C	66	Elk4	ENSMUST00000086556.11:c.197A>G	ENSMUSP00000083743.5:p.Tyr66Cys	H-2-Kb	8	6	6	RALRYCYV	RALRYYYV	NetMHC	53.18	33.42	0.628	71	0.155	95.601	68.626	0.718	33.42	53.18	49.2	71.6	88.05215715	119.6024291	102.2680559	132.3548926	M4	0.742857143	0.742857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.161	71	81	12	0.148148148	1qE4	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.712167355	sgMsh2	cell line
chr1	54988042	54988042	T	C	ENSMUST00000027127.13	1	ENSMUSG00000025982	missense	N/S	1218	Sf3b1	ENSMUST00000027127.13:c.3653A>G	ENSMUSP00000027127.7:p.Asn1218Ser	H-2-Kb	8	5	7	LNYVWPSV	LNYVWPNV	NetMHCpan	41.5	29.8	0.718	110	0.264	120.034	49.952	0.416	24.5	79.84	29.8	41.5	75.46403103	185.2422298	70.10354824	160.228586	M4	0.042857143	0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.262	110	572	105	0.183566434	1qC1.2	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr1	58595689	58595689	A	T	ENSMUST00000027193.8	1	ENSMUSG00000026032	missense	I/F	67	Ndufb3	ENSMUST00000027193.8:c.199A>T	ENSMUSP00000027193.8:p.Ile67Phe	H-2-Kb	8	9	3	GNFTFPSV	GNITFPSV	NetMHCpan	49.1	289.6	5.898	98	0.214	107.5	583.368	5.427	915.1	105.67	289.6	49.1	648.2462304	133.5795574	518.4895408	109.3301641	M4	0.457142857	0.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.222	98	607	110	0.18121911	1qC1.3	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.981994738	sgMsh2	cell line
chr1	88230773	88230773	C	A	ENSMUST00000113130.7	5	ENSMUSG00000079429	missense	L/M	181	Mroh2a	ENSMUST00000113130.7:c.541C>A	ENSMUSP00000108755.1:p.Leu181Met	H-2-Kb	8	4	8	VIVTLAKM	VIVTLAKL	NetMHC	187.36	44.97	0.24	377	0.053	297.593	82.171	0.276	44.97	187.36	68.9	221.3	103.6907462	415.6616909	95.44210297	373.8866857	M4	1.657142857	1.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.055	377	0	0	NA	1qD	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.243286985	sgMsh2	cell line
chr1	151351713	151351713	T	C	ENSMUST00000023918.12	1	ENSMUSG00000023150	missense	Y/H	91	Ivns1abp	ENSMUST00000023918.12:c.271T>C	ENSMUSP00000023918.6:p.Tyr91His	H-2-Kb	8	5	7	VLLNYAHT	VLLNYAYT	SMMPMBEC	192.637	198.034	1.028	159	0.208	277.822	339.303	1.221	371.18	233.73	1146.3	1299.8	307.4255792	321.9141004	198.0341096	192.6371303	M4	0.1	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.206	159	204	33	0.161764706	1qG1	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.911220342	sgMsh2	cell line
chr1	154633618	154633618	A	G	ENSMUST00000187541.6	1	ENSMUSG00000004110	missense	L/P	297	Cacna1e	ENSMUST00000187541.6:c.890T>C	ENSMUSP00000140937.1:p.Leu297Pro	H-2-Kb	8	8	4	DNIPFAVL	DNILFAVL	SMM	178.131	93.485	0.525	79	0.228	412.973	165.678	0.401	220.76	608.34	374.2	572	93.48458404	178.1312026	110.5961477	253.9451951	M4	1.714285714	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.231	79	0	0	NA	1qG3	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr1	134203378	134203378	A	G	ENSMUST00000086465.5	1	ENSMUSG00000042429	missense	F/S	185	Adora1	ENSMUST00000086465.5:c.554T>C	ENSMUSP00000083656.4:p.Phe185Ser	H-2-Kb	8	6	6	MVYFNSFV	MVYFNFFV	NetMHCpan	222.1	254.3	1.145	126	0.175	305.831	292.412	0.956	289.88	934.33	254.3	222.1	294.9442949	295.6242117	310.2701531	316.0385059	M4	1.2	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.171	126	5	0	0	1qE4	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.756401352	sgMsh2	cell line
chr1	151351713	151351713	T	C	ENSMUST00000023918.12	1	ENSMUSG00000023150	missense	Y/H	91	Ivns1abp	ENSMUST00000023918.12:c.271T>C	ENSMUSP00000023918.6:p.Tyr91His	H-2-Kb	9	7	5	LNYAHTAQL	LNYAYTAQL	NetMHCpan	10.4	5.2	0.5	159	0.208	31.415	21.341	0.679	6.52	17.41	5.2	10.4	48.31811688	60.27122243	36.16179668	45.42030017	M4	-0.185714286	-0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.206	159	204	33	0.161764706	1qG1	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.911220342	sgMsh2	cell line
chr1	128364313	128364313	A	G	ENSMUST00000027602.14	1	ENSMUSG00000026356	missense	V/A	476	Dars	ENSMUST00000027602.14:c.1427T>C	ENSMUSP00000027602.8:p.Val476Ala	H-2-Kb	9	6	6	IGLERATML	IGLERVTML	NetMHCpan	169.6	134.8	0.795	102	0.245	303	226.99	0.749	136.11	195.56	134.8	169.6	457.2039776	492.1641774	317.8703353	410.4403034	M4	0.371428571	0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	102	252	49	0.194444444	1qE3	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr1	85579187	85579187	CT	C	ENSMUST00000093508.6	1	ENSMUSG00000070034	FS	K/X	385	Sp110	ENSMUST00000093508.6:c.1154del	ENSMUSP00000091226.6:p.Lys385SerfsTer13	H-2-Kb	9	11	1	SAFRMRQEI	NA	NetMHC	222.54	NA	NA	100	0.28	380.963	NA	NA	NA	222.54	NA	325.3	NA	436.6264089	NA	527.5334467	M4	-0.971428571	-0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.274	100	0	0	NA	1qC5	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	2	1	sgMsh2	cell line
chr1	132527752	132527752	TG	T	ENSMUST00000086521.10	1	ENSMUSG00000053024	FS	P/X	249	Cntn2	ENSMUST00000086521.10:c.746del	ENSMUSP00000083707.4:p.Pro249GlnfsTer84	H-2-Kb	9	78	0	VTPSRDASL	NA	SMM	205.168	NA	NA	65	0.2	229.708	NA	NA	NA	229.14	NA	441.8	NA	205.1681772	NA	230.2767015	M4	-0.8	-0.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.217	65	0	0	NA	1qE4	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.959877739	sgMsh2	cell line
chr1	54988042	54988042	T	C	ENSMUST00000027127.13	1	ENSMUSG00000025982	missense	N/S	1218	Sf3b1	ENSMUST00000027127.13:c.3653A>G	ENSMUSP00000027127.7:p.Asn1218Ser	H-2-Kb	9	11	1	SVFETSPHV	NVFETSPHV	NetMHC	281.5	2163.05	7.684	110	0.264	438.894	2456.263	5.596	2163.05	281.5	3287.7	519.6	1545.645878	358.1871488	2749.476424	685.8829388	M4	-0.4	-0.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.262	110	572	105	0.183566434	1qC1.2	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr1	54988042	54988042	T	C	ENSMUST00000027127.13	1	ENSMUSG00000025982	missense	N/S	1218	Sf3b1	ENSMUST00000027127.13:c.3653A>G	ENSMUSP00000027127.7:p.Asn1218Ser	H-2-Kb	9	5	7	LNYVWPSVF	LNYVWPNVF	NetMHCpan	129	276.3	2.142	110	0.264	192.609	263.817	1.37	587.37	373.41	276.3	129	202.3531643	176.6485187	251.3332806	208.5691158	M4	0.942857143	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.262	110	572	105	0.183566434	1qC1.2	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr1	127412243	127412243	G	T	ENSMUST00000038361.10	1	ENSMUSG00000036155	missense	V/L	454	Mgat5	ENSMUST00000038361.10:c.1360G>T	ENSMUSP00000038359.4:p.Val454Leu	H-2-Kb	9	6	6	LVYGKLDSF	LVYGKVDSF	SMM	278.042	542.138	1.95	144	0.167	372.202	726.824	1.953	911.51	463.7	1434.9	1078.9	542.1381881	278.0417415	480.0096849	280.704904	M4	-0.471428571	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.167	144	136	19	0.139705882	1qE3	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.738707753	sgMsh2	cell line
chr1	94024473	94024473	T	C	ENSMUST00000190212.6	1	ENSMUSG00000034000	missense	V/A	188	Neu4	ENSMUST00000190212.6:c.563T>C	ENSMUSP00000140127.1:p.Val188Ala	H-2-Kb	9	5	7	VGPGHGAQL	VGPGHGVQL	NetMHCpan	296.6	569.5	1.92	138	0.174	474.793	820.505	1.728	1148.74	475.07	569.5	296.6	997.9527977	692.0062231	643.0577846	474.5150595	M4	-0.5	3.17E-17	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.192	138	0	0	NA	1qD	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.849292746	sgMsh2	cell line
chr1	134203378	134203378	A	G	ENSMUST00000086465.5	1	ENSMUSG00000042429	missense	F/S	185	Adora1	ENSMUST00000086465.5:c.554T>C	ENSMUSP00000083656.4:p.Phe185Ser	H-2-Kb	9	7	5	VYFNSFVWV	VYFNFFVWV	SMMPMBEC	180.821	38.305	0.212	126	0.175	323.34	92.217	0.285	146.13	491.19	283.6	458.7	36.82222268	187.9792879	38.30451784	180.8214719	M4	1.257142857	1.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.171	126	5	0	0	1qE4	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.756401352	sgMsh2	cell line
chr10	68778643	68778643	T	C	ENSMUST00000080995.7	1	ENSMUSG00000060044	missense	L/P	296	Tmem26	ENSMUST00000080995.7:c.887T>C	ENSMUSP00000079789.6:p.Leu296Pro	H-2-Db	9	5	7	FAVKNSPVM	FAVKNSLVM	NetMHC	8.71	9.25	1.062	143	0.224	25.374	27.679	1.091	9.25	8.71	9.8	10.7	46.62512402	43.51309752	45.5585612	40.04700113	M4	0.071428571	0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	143	0	0	NA	10qB5.3	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	0.999688336	sgMsh2	cell line
chr1	165539831	165539831	A	G	ENSMUST00000027852.14	1	ENSMUSG00000026567	missense	T/A	557	Adcy10	ENSMUST00000027852.14:c.1669A>G	ENSMUSP00000027852.8:p.Thr557Ala	H-2-Db	9	4	8	SFHQNFYAI	SFHQNFYTI	SMM	105.104	62.176	0.592	142	0.366	167.108	96.911	0.58	73.99	141.21	379.5	647.3	62.17560216	105.1041828	119.8312253	193.0056399	M4	-0.342857143	-0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.371	142	0	0	NA	1qH2.3	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	2	1	sgMsh2	cell line
chr10	68778643	68778643	T	C	ENSMUST00000080995.7	1	ENSMUSG00000060044	missense	L/P	296	Tmem26	ENSMUST00000080995.7:c.887T>C	ENSMUSP00000079789.6:p.Leu296Pro	H-2-Db	11	5	7	FAVKNSPVMAL	FAVKNSLVMAL	NetMHCpan	139.4	136.7	0.981	143	0.224	479.924	423.713	0.883	274.55	315.59	136.7	139.4	572.8751711	644.2582669	2605.313561	2641.557083	M4	0.828571429	0.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	143	0	0	NA	10qB5.3	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	0.999688336	sgMsh2	cell line
chr10	50754122	50754122	G	T	ENSMUST00000035606.9	5	ENSMUSG00000038774	missense	S/I	1769	Ascc3	ENSMUST00000035606.9:c.5306G>T	ENSMUSP00000036726.8:p.Ser1769Ile	H-2-Kb	8	8	4	MNPIYYSL	MNPSYYSL	NetMHC	10.83	12.27	1.133	137	0.27	32.613	36.465	1.118	12.27	10.83	28.9	21.7	44.02911945	43.52512229	62.62388407	64.23030732	M4	-0.028571429	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.276	137	101	7	0.069306931	10qB3	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr10	52128447	52128447	GT	G	ENSMUST00000020045.9	1	ENSMUSG00000019893	FS	T/X	1026	Ros1	ENSMUST00000020045.9:c.3076del	ENSMUSP00000020045.3:p.Thr1026HisfsTer36	H-2-Kb	8	11	1	HLYHFVHL	NA	NetMHCpan	22.4	NA	NA	79	0.228	43.205	NA	NA	NA	46.07	NA	22.4	NA	64.37837347	NA	40.3403814	M4	0.985714286	0.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.241	79	2	0	0	10qB3	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr1	165551108	165551108	T	C	ENSMUST00000027852.14	1	ENSMUSG00000026567	missense	M/T	822	Adcy10	ENSMUST00000027852.14:c.2465T>C	ENSMUSP00000027852.8:p.Met822Thr	H-2-Kb	8	11	1	TSLSHQML	MSLSHQML	NetMHC	75.85	50.29	0.663	101	0.366	115.039	86.865	0.755	50.29	75.85	102.4	165.3	72.40023903	101.3304567	101.3304567	128.7478543	M4	0.171428571	0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.369	101	0	0	NA	1qH2.3	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	2	1	sgMsh2	cell line
chr10	79976809	79976809	CA	C	ENSMUST00000045085.7	1	ENSMUSG00000035745	FS	Q/X	906	Grin3b	ENSMUST00000045085.7:c.2718del	ENSMUSP00000048576.1:p.Gln906HisfsTer?	H-2-Kb	8	120	0	LFYIQTRL	NA	SMM	99.024	NA	NA	21	0.286	137.112	NA	NA	NA	135.95	NA	157.3	NA	99.0238939	NA	138.2738324	M4	0.157142857	0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.333	21	0	0	NA	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	2	1	sgMsh2	cell line
chr1	174181066	174181066	T	A	ENSMUST00000027817.7	1	ENSMUSG00000026532	missense	D/E	245	Spta1	ENSMUST00000027817.7:c.735T>A	ENSMUSP00000027817.7:p.Asp245Glu	H-2-Kb	8	6	6	VNAAWERL	VNAAWDRL	SMM	245.324	243.075	0.991	70	0.129	307.504	540.271	1.757	1045.85	649.98	741.9	310.4	243.0748352	245.323979	338.6413603	304.6070846	M4	-0.714285714	-0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.136	70	0	0	NA	1qH3	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.601582362	sgMsh2	cell line
chr10	26271888	26271888	T	C	ENSMUST00000060716.5	5	ENSMUSG00000051354	missense	L/P	487	Samd3	ENSMUST00000060716.5:c.1460T>C	ENSMUSP00000057805.5:p.Leu487Pro	H-2-Kb	9	6	6	QTFNFPETL	QTFNFLETL	NetMHC	70.68	27.41	0.388	85	0.188	201.184	82.234	0.409	27.41	70.68	32	90.4	132.4677013	311.967965	170.7064772	407.6148523	M4	0.014285714	0.014285714	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.205	85	0	0	NA	10qA4	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	0.906796942	sgMsh2	cell line
chr10	52128447	52128447	GT	G	ENSMUST00000020045.9	1	ENSMUSG00000019893	FS	T/X	1026	Ros1	ENSMUST00000020045.9:c.3076del	ENSMUSP00000020045.3:p.Thr1026HisfsTer36	H-2-Kb	9	10	2	KHLYHFVHL	NA	NetMHC	73	NA	NA	79	0.228	120.219	NA	NA	NA	73	NA	74	NA	177.4638912	NA	166.4370463	M4	0.985714286	0.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.241	79	2	0	0	10qB3	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr1	165551108	165551108	T	C	ENSMUST00000027852.14	1	ENSMUSG00000026567	missense	M/T	822	Adcy10	ENSMUST00000027852.14:c.2465T>C	ENSMUSP00000027852.8:p.Met822Thr	H-2-Kb	9	11	1	TSLSHQMLV	MSLSHQMLV	NetMHC	188.72	170.9	0.906	101	0.366	404.261	366.256	0.906	170.9	188.72	373.5	576.1	359.0128555	353.2726369	537.3410257	455.2500477	M4	0.885714286	0.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.369	101	0	0	NA	1qH2.3	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	2	1	sgMsh2	cell line
chr10	50754122	50754122	G	T	ENSMUST00000035606.9	5	ENSMUSG00000038774	missense	S/I	1769	Ascc3	ENSMUST00000035606.9:c.5306G>T	ENSMUSP00000036726.8:p.Ser1769Ile	H-2-Kb	9	7	5	IMNPIYYSL	IMNPSYYSL	NetMHCpan	106.8	122.5	1.147	137	0.27	213.697	155.456	0.727	120.49	198.25	122.5	106.8	188.4126249	229.1447967	231.3396105	261.9690589	M4	-0.028571429	0.457142857	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.276	137	101	7	0.069306931	10qB3	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr10	79976809	79976809	CA	C	ENSMUST00000045085.7	1	ENSMUSG00000035745	FS	Q/X	906	Grin3b	ENSMUST00000045085.7:c.2718del	ENSMUSP00000048576.1:p.Gln906HisfsTer?	H-2-Kb	9	35	0	VSCWNLGRL	NA	SMMPMBEC	207.133	NA	NA	21	0.286	272.778	NA	NA	NA	208.96	NA	372.4	NA	336.5968133	NA	207.1333361	M4	0.114285714	0.7	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.333	21	0	0	NA	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	2	1	sgMsh2	cell line
chr10	58477121	58477121	C	T	ENSMUST00000003310.6	5	ENSMUSG00000003226	missense	S/F	1221	Ranbp2	ENSMUST00000003310.6:c.3662C>T	ENSMUSP00000003310.5:p.Ser1221Phe	H-2-Kb	9	9	3	KTFGKIRLL	KTSGKIRLL	NetMHC	222.79	5657.7	25.395	174	0.259	305.871	4670.555	15.27	5657.7	222.79	6649.9	229.7	3573.633412	382.0410236	3683.409467	424.864065	M4	0.871428571	0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.241	174	219	45	0.205479452	10qB4	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr1	173270231	173270231	A	G	ENSMUST00000213420.1	5	ENSMUSG00000049605	missense	S/G	19	Olfr418	ENSMUST00000213420.1:c.55A>G	ENSMUSP00000150427.1:p.Ser19Gly	H-2-Kb	9	4	8	FVFQGFSGF	FVFQGFSSF	NetMHCpan	196.3	191.2	0.974	206	0.073	310.099	338.26	1.091	338.26	307.51	191.2	196.3	350.8407252	312.6871254	338.259498	332.8511027	M4	0.471428571	1.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.077	206	0	0	NA	1qH3	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.340601778	sgMsh2	cell line
chr10	25513051	25513051	A	G	ENSMUST00000053748.15	1	ENSMUSG00000019978	missense	T/A	980	Epb41l2	ENSMUST00000053748.15:c.2938A>G	ENSMUSP00000055122.8:p.Thr980Ala	H-2-Kb	9	7	7	VVVHKEAEL	VVVHKETEL	SMM	191.915	256.513	1.337	77	0.273	252.109	438.156	1.738	611.31	309.57	1489.1	853.1	256.5133662	191.9154771	265.0025177	194.6480243	M4	-0.614285714	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.267	77	476	104	0.218487395	10qA4	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr10	81420728	81420728	A	G	ENSMUST00000020461.14	1	ENSMUSG00000055053	missense	L/P	34	Nfic	ENSMUST00000020461.14:c.101T>C	ENSMUSP00000020461.8:p.Leu34Pro	H-2-Kb	9	4	8	FAYTWFNPQ	FAYTWFNLQ	SMM	83.581	106.441	1.274	75	0.16	199.198	371.599	1.865	621.79	311.25	2214.7	982.5	106.4412583	83.58146902	121.4087534	87.14651012	M4	-1.242857143	0.142857143	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.157	75	19	4	0.210526316	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	0.694473756	sgMsh2	cell line
chr10	52128447	52128447	GT	G	ENSMUST00000020045.9	1	ENSMUSG00000019893	FS	T/X	1026	Ros1	ENSMUST00000020045.9:c.3076del	ENSMUSP00000020045.3:p.Thr1026HisfsTer36	H-2-Kb	9	13	0	YHFVHLNQF	NA	SMM	226.001	NA	NA	79	0.228	334.669	NA	NA	NA	434.78	NA	520.4	NA	226.0008122	NA	234.557865	M4	0.485714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.241	79	2	0	0	10qB3	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr10	23897365	23897365	T	C	ENSMUST00000041416.7	1	ENSMUSG00000037440	missense	Y/H	97	Vnn1	ENSMUST00000041416.7:c.289T>C	ENSMUSP00000040599.7:p.Tyr97His	H-2-Kb	9	7	5	TIYPHLEEI	TIYPYLEEI	NetMHCpan	162.8	59.8	0.367	55	0.255	280.695	187.481	0.668	155.05	490.72	59.8	162.8	228.6177783	285.1740477	219.9125427	276.216743	M4	-0.685714286	-0.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	55	937	203	0.216648879	10qA4	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr1	174502907	174502907	G	GC	ENSMUST00000030039.12	1	ENSMUSG00000028354	FS	A/AX	288	Fmn2	ENSMUST00000030039.12:c.867dup	ENSMUSP00000030039.7:p.Ser290LeufsTer36	H-2-Kb	9	10	4	TAPLRSHRL	NA	SMM	321.447	NA	NA	39	0.128	416.536	NA	NA	NA	500.72	NA	440.2	NA	321.4474612	NA	392.8710251	M4	-1	-0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.148	39	0	0	NA	1qH3	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.654663158	sgMsh2	cell line
chr1	174181066	174181066	T	A	ENSMUST00000027817.7	1	ENSMUSG00000026532	missense	D/E	245	Spta1	ENSMUST00000027817.7:c.735T>A	ENSMUSP00000027817.7:p.Asp245Glu	H-2-Kb	9	8	4	AAWERLWSL	AAWDRLWSL	NetMHCpan	198.4	287	1.447	70	0.129	281.891	318.114	1.128	913.42	755.69	287	198.4	349.2287585	317.0370367	257.7804634	246.7459312	M4	-0.428571429	-0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.136	70	0	0	NA	1qH3	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.601582362	sgMsh2	cell line
chr10	99758284	99758284	C	A	ENSMUST00000056085.5	NA	ENSMUSG00000046934	missense	Q/H	306	Csl	ENSMUST00000056085.5:c.918G>T	ENSMUSP00000052373.4:p.Gln306His	H-2-Db	9	6	6	HGLANHEVL	HGLANQEVL	NetMHC	32.48	27.91	0.859	201	0.259	100.053	71.039	0.71	27.91	32.48	44.9	42.5	155.8188519	261.5893146	97.17845721	157.6050032	M4	0.485714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.246	201	14	0	0	10qD1	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr11	36008549	36008549	T	C	ENSMUST00000102801.7	5	ENSMUSG00000049336	missense	Y/C	2594	Tenm2	ENSMUST00000102801.7:c.7781A>G	ENSMUSP00000099865.1:p.Tyr2594Cys	H-2-Db	9	5	7	SVLNNACYL	SVLNNAYYL	NetMHCpan	29.4	22.1	0.752	119	0.227	58.079	41.36	0.712	16.41	35.69	22.1	29.4	60.62056782	80.46740575	79.53714539	98.30373071	M4	0.514285714	0.642857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.232	119	0	0	NA	11qA4	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr11	43556667	43556667	G	T	ENSMUST00000050574.6	1	ENSMUSG00000044707	missense	R/L	59	Ccnjl	ENSMUST00000050574.6:c.176G>T	ENSMUSP00000058111.6:p.Arg59Leu	H-2-Db	9	9	3	SALHLAIYL	SARHLAIYL	NetMHC	172.76	6022.1	34.858	60	0.25	214.407	4374.189	20.401	6022.1	172.76	8244.8	501.5	2082.667788	190.8182902	2726.277127	237.9961875	M4	1.885714286	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.246	60	0	0	NA	11qB1.1	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr11	58757857	58757857	G	A	ENSMUST00000215071.1	5	ENSMUSG00000107677	missense	S/N	64	Olfr316	ENSMUST00000215071.1:c.191G>A	ENSMUSP00000151136.1:p.Ser64Asn	H-2-Db	9	7	5	YFLLNQLSI	YFLLSQLSI	SMM	53.164	1078.003	20.277	400	0.087	141.124	3409.713	24.161	8143.16	200.67	5247	352.8	1078.003076	53.16428776	1572.425217	81.57742638	M4	1.157142857	1.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.086	400	0	0	NA	11qB1.3	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	0.380412376	sgMsh2	cell line
chr10	129902575	129902575	G	A	ENSMUST00000071557.1	NA	ENSMUSG00000061961	missense	A/V	51	Olfr815	ENSMUST00000071557.1:c.152C>T	ENSMUSP00000071488.1:p.Ala51Val	H-2-Db	9	10	2	IVLTLLDPI	IALTLLDPI	SMMPMBEC	263.372	41.264	0.157	238	0.248	279.139	38.032	0.136	19.81	284.36	34.8	391.2	42.8173712	273.9176392	41.26387413	263.3722415	M4	1.442857143	2.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.256	238	0	0	NA	10qD3	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	sgMsh2	cell line
chr11	64436143	64436143	T	C	ENSMUST00000058652.5	1	ENSMUSG00000047759	missense	L/S	26	Hs3st3a1	ENSMUST00000058652.5:c.77T>C	ENSMUSP00000055930.5:p.Leu26Ser	H-2-Kb	8	5	7	SIFRKFSL	SIFRKFLL	NetMHC	9.31	16.69	1.793	24	0.333	58.24	74.174	1.274	16.69	9.31	19.6	17	128.7478543	100.4014535	130.8398387	99.48096742	M4	0.671428571	0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.317	24	0	0	NA	11qB3	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr10	129501829	129501829	T	C	ENSMUST00000218901.1	NA	ENSMUSG00000044025	missense	F/S	315	Olfr790	ENSMUST00000218901.1:c.944T>C	ENSMUSP00000151759.1:p.Phe315Ser	H-2-Kb	8	13	2	ISFSSKNL	IFFSSKNL	NetMHCpan	18.5	115.8	6.259	69	0.319	19.094	83.126	4.354	110.95	18.52	115.8	18.5	45.89231861	19.66708524	55.30189331	20.68902384	M4	-0.457142857	-0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.318	69	0	0	NA	10qD3	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr10	129626025	129626025	A	G	ENSMUST00000204979.2	2	ENSMUSG00000095002	missense	L/P	12	Olfr798	ENSMUST00000204979.2:c.35T>C	ENSMUSP00000144716.1:p.Leu12Pro	H-2-Kb	8	5	7	SVSEFIPL	SVSEFILL	NetMHC	38.39	159.69	4.16	92	0.272	72.402	215.586	2.978	159.69	38.39	96.3	42.3	271.4813499	102.5038081	318.9627742	115.8083836	M4	1.342857143	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.264	92	0	0	NA	10qD3	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	sgMsh2	cell line
chr10	107023690	107023690	GC	G	ENSMUST00000165067.8	5	ENSMUSG00000035948	FS	G/X	349	Acss3	ENSMUST00000165067.8:c.1047del	ENSMUSP00000128209.1:p.Pro350LeufsTer61	H-2-Kb	8	5	8	HSYICYGL	HSYICYGP	NetMHC	46.87	6591.43	140.632	80	0.212	71.351	2810.82	39.394	6591.43	46.87	3168.4	59	2453.23979	101.3304567	2171.400833	83.70280268	M4	1	1	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.239	80	0	0	NA	10qD1	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr11	64436143	64436143	T	C	ENSMUST00000058652.5	1	ENSMUSG00000047759	missense	L/S	26	Hs3st3a1	ENSMUST00000058652.5:c.77T>C	ENSMUSP00000055930.5:p.Leu26Ser	H-2-Kb	8	6	6	IFRKFSLM	IFRKFLLM	NetMHCpan	59.2	89.9	1.519	24	0.333	84.34	199.755	2.368	269.47	59.35	89.9	59.2	177.3127641	109.3301641	222.1979255	134.1961326	M4	0.3	0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.317	24	0	0	NA	11qB3	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr11	66094123	66094123	T	C	ENSMUST00000080665.9	5	ENSMUSG00000056752	missense	R/G	1207	Dnah9	ENSMUST00000080665.9:c.3619A>G	ENSMUSP00000079494.3:p.Arg1207Gly	H-2-Kb	8	10	2	VGQQVAPL	VRQQVAPL	SMM	66.182	315.312	4.764	87	0.195	74.627	1070.287	14.342	1743.62	66.89	2996.9	350.4	315.3116375	66.18201718	396.9538331	82.36448742	M4	0.114285714	0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.223	87	0	0	NA	11qB3	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	0.986418137	sgMsh2	cell line
chr10	84880179	84880179	A	G	ENSMUST00000060397.12	1	ENSMUSG00000020037	missense	H/R	454	Rfx4	ENSMUST00000060397.12:c.1361A>G	ENSMUSP00000051107.6:p.His454Arg	H-2-Kb	8	8	4	GSFRLIHL	GSFHLIHL	NetMHCpan	67.1	120.5	1.796	78	0.231	76.295	168.297	2.206	311.63	80.19	120.5	67.1	207.8452003	111.3627636	128.7478543	72.40023903	M4	0.914285714	0.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.235	78	0	0	NA	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr11	34688463	34688463	A	T	ENSMUST00000093193.11	1	ENSMUSG00000020143	missense	L/M	708	Dock2	ENSMUST00000093193.11:c.2122T>A	ENSMUSP00000090884.5:p.Leu708Met	H-2-Kb	8	9	3	ATMAYKKL	ATLAYKKL	NetMHCpan	62.7	80.7	1.287	152	0.25	117.441	94.582	0.805	84.03	96.29	80.7	62.7	118.7790917	204.0515979	105.1332282	138.5925865	M4	-0.328571429	-0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.248	152	0	0	NA	11qA4	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr11	64436143	64436143	T	C	ENSMUST00000058652.5	1	ENSMUSG00000047759	missense	L/S	26	Hs3st3a1	ENSMUST00000058652.5:c.77T>C	ENSMUSP00000055930.5:p.Leu26Ser	H-2-Kb	8	10	2	FSLMLCSL	FLLMLCSL	SMMPMBEC	198.034	1179.614	5.957	24	0.333	222.021	2012.92	9.066	3753.46	228.33	2530.5	225.9	1495.34017	218.1423563	1179.614222	198.0341096	M4	2.028571429	2.028571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.317	24	0	0	NA	11qB3	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr11	58757857	58757857	G	A	ENSMUST00000215071.1	5	ENSMUSG00000107677	missense	S/N	64	Olfr316	ENSMUST00000215071.1:c.191G>A	ENSMUSP00000151136.1:p.Ser64Asn	H-2-Kb	8	6	6	MYFLLNQL	MYFLLSQL	NetMHCpan	183.7	77.4	0.421	400	0.087	238.921	133.441	0.559	129.56	253.53	77.4	183.7	148.8469706	240.8463117	137.3219621	236.9954455	M4	0.842857143	0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.086	400	0	0	NA	11qB1.3	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	0.380412376	sgMsh2	cell line
chr11	58720289	58720289	A	G	ENSMUST00000214728.1	5	ENSMUSG00000108265	missense	V/A	253	Olfr318	ENSMUST00000214728.1:c.758T>C	ENSMUSP00000149053.1:p.Val253Ala	H-2-Kb	8	6	6	ASLFYATT	ASLFYVTT	NetMHCpan	150.5	446.6	2.967	288	0.233	215.386	622.033	2.888	2155.94	299.61	446.6	150.5	740.8665723	256.2949211	503.1992672	174.4777291	M4	0.7	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.241	288	0	0	NA	11qB1.3	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr10	129902575	129902575	G	A	ENSMUST00000071557.1	NA	ENSMUSG00000061961	missense	A/V	51	Olfr815	ENSMUST00000071557.1:c.152C>T	ENSMUSP00000071488.1:p.Ala51Val	H-2-Kb	8	8	4	AIIVLTLL	AIIALTLL	NetMHC	351.89	464.82	1.321	238	0.248	432.513	465.6	1.076	464.82	351.89	448.3	466	466.380088	447.4453509	491.7450535	417.5802981	M4	3.414285714	3.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.256	238	0	0	NA	10qD3	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	sgMsh2	cell line
chr11	57528173	57528173	A	T	ENSMUST00000020830.13	1	ENSMUSG00000020522	missense	D/V	53	Mfap3	ENSMUST00000020830.13:c.158A>T	ENSMUSP00000020830.7:p.Asp53Val	H-2-Kb	8	4	8	SAGSYSGV	SAGSYSGD	NetMHC	397.02	22519.42	56.721	126	0.175	446.118	12796.838	28.685	22519.42	397.02	29869.5	1113.8	3074.255792	459.9811133	2458.895091	432.2549746	M4	0.328571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.178	126	64	13	0.203125	11qB1.3	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	0.78736515	sgMsh2	cell line
chr11	58720289	58720289	A	G	ENSMUST00000214728.1	5	ENSMUSG00000108265	missense	V/A	253	Olfr318	ENSMUST00000214728.1:c.758T>C	ENSMUSP00000149053.1:p.Val253Ala	H-2-Kb	8	7	5	SLFYATTL	SLFYVTTL	NetMHCpan	71.7	76.1	1.061	288	0.233	442.323	346.133	0.783	365.16	472.43	76.1	71.7	347.3281635	442.3234863	344.9371732	442.3234863	M4	1.357142857	1.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.241	288	0	0	NA	11qB1.3	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr10	129790687	129790687	T	A	ENSMUST00000214206.1	5	ENSMUSG00000069421	missense	N/Y	301	Olfr810	ENSMUST00000214206.1:c.901A>T	ENSMUSP00000149044.1:p.Asn301Tyr	H-2-Kb	8	9	3	FIYTVHRI	FINTVHRI	SMM	272.734	3870.259	14.191	189	0.233	347.333	7459.158	21.476	13611.32	506.16	10761.7	400.4	3870.258739	272.7344509	4156.616909	294.2659418	M4	0.5	0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.247	189	0	0	NA	10qD3	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	sgMsh2	cell line
chr10	129723522	129723522	C	A	ENSMUST00000217219.1	5	ENSMUSG00000096858	missense	E/D	7	Olfr805	ENSMUST00000217219.1:c.21G>T	ENSMUSP00000149493.1:p.Glu7Asp	H-2-Kb	8	6	2	VDIVFILL	VEIVFILL	SMMPMBEC	89.277	93.27	1.045	128	0.25	295.389	265.874	0.9	433.18	529.79	824.9	499	98.56892043	91.77829809	93.26957547	89.27708467	M4	2.871428571	2.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.266	128	0	0	NA	10qD3	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	sgMsh2	cell line
chr11	50237259	50237259	T	A	ENSMUST00000102772.3	1	ENSMUSG00000020377	missense	N/I	55	Ltc4s	ENSMUST00000102772.3:c.164A>T	ENSMUSP00000099833.3:p.Asn55Ile	H-2-Kb	8	11	1	ICSEYFPL	NCSEYFPL	SMMPMBEC	163.207	1944.196	11.912	32	0.406	262.12	3149.402	12.015	8197	536.95	3700.2	307.1	2598.603386	217.1400833	1944.195797	163.2074578	M4	0.271428571	0.371428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.375	32	2	0	0	11qB1.3	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	2	1	sgMsh2	cell line
chr10	107023690	107023690	GC	G	ENSMUST00000165067.8	5	ENSMUSG00000035948	FS	G/X	349	Acss3	ENSMUST00000165067.8:c.1047del	ENSMUSP00000128209.1:p.Pro350LeufsTer61	H-2-Kb	8	25	0	SLWEHRML	NA	NetMHCpan	253.8	NA	NA	80	0.212	293.928	NA	NA	NA	562.8	NA	253.8	NA	294.2659418	NA	293.5891489	M4	-0.371428571	-0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.239	80	0	0	NA	10qD1	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr10	130472110	130472110	CA	C	ENSMUST00000164227.3	5	ENSMUSG00000091511	FS	L/X	753	Vmn2r87	ENSMUST00000164227.3:c.2258del	ENSMUSP00000129215.2:p.Leu753TrpfsTer25	H-2-Kb	8	15	0	ASLWLSWL	NA	SMM	312.421	NA	NA	311	0.203	407.641	NA	NA	NA	717.62	NA	457.4	NA	312.4208431	NA	357.8821189	M4	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.2	311	0	0	NA	10qD3	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	sgMsh2	cell line
chr10	130472110	130472110	CA	C	ENSMUST00000164227.3	5	ENSMUSG00000091511	FS	L/X	753	Vmn2r87	ENSMUST00000164227.3:c.2258del	ENSMUSP00000129215.2:p.Leu753TrpfsTer25	H-2-Kb	8	19	0	LSWLGTFL	NA	SMMPMBEC	307.426	NA	NA	311	0.203	420.694	NA	NA	NA	1101.66	NA	318.1	NA	523.2870654	NA	307.4255792	M4	1.085714286	1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.2	311	0	0	NA	10qD3	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	sgMsh2	cell line
chr11	64436143	64436143	T	C	ENSMUST00000058652.5	1	ENSMUSG00000047759	missense	L/S	26	Hs3st3a1	ENSMUST00000058652.5:c.77T>C	ENSMUSP00000055930.5:p.Leu26Ser	H-2-Kb	9	5	7	SIFRKFSLM	SIFRKFLLM	NetMHC	10.1	24.69	2.445	24	0.333	22.941	36.009	1.57	24.69	10.1	14.8	11.2	47.3271116	34.68246846	57.44470454	44.38640791	M4	0.3	0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.317	24	0	0	NA	11qB3	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr11	58720289	58720289	A	G	ENSMUST00000214728.1	5	ENSMUSG00000108265	missense	V/A	253	Olfr318	ENSMUST00000214728.1:c.758T>C	ENSMUSP00000149053.1:p.Val253Ala	H-2-Kb	9	6	6	ASLFYATTL	ASLFYVTTL	NetMHCpan	22.7	21.8	0.96	288	0.233	156.793	122.872	0.784	47.02	56.99	21.8	22.7	251.2522734	270.4643321	198.7238535	256.5960697	M4	1.357142857	1.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.241	288	0	0	NA	11qB1.3	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr11	34688463	34688463	A	T	ENSMUST00000093193.11	1	ENSMUSG00000020143	missense	L/M	708	Dock2	ENSMUST00000093193.11:c.2122T>A	ENSMUSP00000090884.5:p.Leu708Met	H-2-Kb	9	11	1	MAYKKLMTV	LAYKKLMTV	NetMHCpan	53.3	93.4	1.752	152	0.25	111.459	136.253	1.222	92.9	63.29	93.4	53.3	179.1059444	159.628341	191.9773533	191.9773533	M4	0.014285714	0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.248	152	0	0	NA	11qA4	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr10	129626025	129626025	A	G	ENSMUST00000204979.2	2	ENSMUSG00000095002	missense	L/P	12	Olfr798	ENSMUST00000204979.2:c.35T>C	ENSMUSP00000144716.1:p.Leu12Pro	H-2-Kb	9	4	8	TSVSEFIPL	TSVSEFILL	NetMHC	66.41	157	2.364	92	0.272	133.399	221.183	1.658	157	66.41	211.1	85.2	231.2650474	181.5975563	301.4740949	216.3963843	M4	1.342857143	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.264	92	0	0	NA	10qD3	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	sgMsh2	cell line
chr10	107023690	107023690	GC	G	ENSMUST00000165067.8	5	ENSMUSG00000035948	FS	G/X	349	Acss3	ENSMUST00000165067.8:c.1047del	ENSMUSP00000128209.1:p.Pro350LeufsTer61	H-2-Kb	9	5	8	HSYICYGLF	HSYICYGPL	SMM	90.388	42.083	0.466	80	0.212	96.383	26.909	0.279	5.83	102.35	16.3	113.2	42.08332054	90.3878383	37.51889162	90.41698059	M4	1.514285714	1.514285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.239	80	0	0	NA	10qD1	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr11	34688463	34688463	A	T	ENSMUST00000093193.11	1	ENSMUSG00000020143	missense	L/M	708	Dock2	ENSMUST00000093193.11:c.2122T>A	ENSMUSP00000090884.5:p.Leu708Met	H-2-Kb	9	3	9	IQQHFSATM	IQQHFSATL	NetMHC	108.3	43.99	0.406	152	0.25	432.806	302.966	0.7	43.99	108.3	87	183.1	518.9314595	682.5115418	629.8686601	853.5913393	M4	-0.242857143	-0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.248	152	0	0	NA	11qA4	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr11	58720289	58720289	A	G	ENSMUST00000214728.1	5	ENSMUSG00000108265	missense	V/A	253	Olfr318	ENSMUST00000214728.1:c.758T>C	ENSMUSP00000149053.1:p.Val253Ala	H-2-Kb	9	5	7	VASLFYATT	VASLFYVTT	NetMHC	116.64	846.65	7.259	288	0.233	149.987	327.309	2.182	846.65	116.64	389.7	117.9	264.9171047	183.7003569	246.7459312	182.0748664	M4	0.7	1.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.241	288	0	0	NA	11qB1.3	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr11	67211360	67211360	C	A	ENSMUST00000124516.7	1	ENSMUSG00000056328	missense	R/S	826	Myh1	ENSMUST00000124516.7:c.2476C>A	ENSMUSP00000117569.1:p.Arg826Ser	H-2-Kb	9	6	6	IQYNVSAFM	IQYNVRAFM	NetMHC	125.35	144.71	1.154	226	0.212	385.659	420.869	1.091	144.71	125.35	131.9	140.2	830.0609824	631.1171763	697.02764	656.5230826	M4	0.728571429	0.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.211	226	0	0	NA	11qB3	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	0.933337341	sgMsh2	cell line
chr11	50237259	50237259	T	A	ENSMUST00000102772.3	1	ENSMUSG00000020377	missense	N/I	55	Ltc4s	ENSMUST00000102772.3:c.164A>T	ENSMUSP00000099833.3:p.Asn55Ile	H-2-Kb	9	10	2	VICSEYFPL	VNCSEYFPL	SMM	116.174	87.722	0.755	32	0.406	137.523	100.849	0.733	107.02	148.79	115.7	213.3	87.72229799	116.1742828	94.67820161	126.255411	M4	0.271428571	1.2	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.375	32	2	0	0	11qB1.3	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	2	1	sgMsh2	cell line
chr11	59589837	59589837	T	G	ENSMUST00000215626.1	5	ENSMUSG00000048919	missense	Q/P	84	Olfr223	ENSMUST00000215626.1:c.251A>C	ENSMUSP00000149991.1:p.Gln84Pro	H-2-Kb	9	8	4	IVPPLLVNL	IVPQLLVNL	NetMHCpan	129.6	141.4	1.091	109	0.229	391.079	352.033	0.9	130.07	151.04	141.4	129.6	588.9928191	631.1171763	562.6651281	673.3641643	M4	1.271428571	2.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	109	0	0	NA	11qB1.3	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	0.999688336	sgMsh2	cell line
chr11	61546578	61546578	A	C	ENSMUST00000179936.7	1	ENSMUSG00000001036	missense	I/S	56	Epn2	ENSMUST00000179936.7:c.167T>G	ENSMUSP00000136950.1:p.Ile56Ser	H-2-Kb	9	6	6	VAFSESMSM	VAFSEIMSM	NetMHCpan	123.9	82.3	0.664	73	0.233	145.532	154.465	1.061	140.62	155.51	82.3	123.9	168.310031	135.5532704	254.8296748	263.7849417	M4	0.1	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.246	73	102	32	0.31372549	11qB2	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr11	64436143	64436143	T	C	ENSMUST00000058652.5	1	ENSMUSG00000047759	missense	L/S	26	Hs3st3a1	ENSMUST00000058652.5:c.77T>C	ENSMUSP00000055930.5:p.Leu26Ser	H-2-Kb	9	10	2	FSLMLCSLL	FLLMLCSLL	NetMHC	156.98	1757.09	11.193	24	0.333	312.314	1763.824	5.648	1757.09	156.98	3350.1	265.5	1770.557356	368.2222268	1539.040328	359.1286062	M4	2.685714286	2.685714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.317	24	0	0	NA	11qB3	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr11	64436143	64436143	T	C	ENSMUST00000058652.5	1	ENSMUSG00000047759	missense	L/S	26	Hs3st3a1	ENSMUST00000058652.5:c.77T>C	ENSMUSP00000055930.5:p.Leu26Ser	H-2-Kb	9	6	6	IFRKFSLML	IFRKFLLML	NetMHC	166.48	198.54	1.193	24	0.333	185.413	195.259	1.053	198.54	166.48	250.7	166.6	159.261206	204.225515	191.9773533	289.9011913	M4	0.442857143	0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.317	24	0	0	NA	11qB3	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr10	130472110	130472110	CA	C	ENSMUST00000164227.3	5	ENSMUSG00000091511	FS	L/X	753	Vmn2r87	ENSMUST00000164227.3:c.2258del	ENSMUSP00000129215.2:p.Leu753TrpfsTer25	H-2-Kb	9	9	3	GSWLWGASL	NA	NetMHCpan	270.2	NA	NA	311	0.203	374.862	NA	NA	NA	300.72	NA	270.2	NA	563.7804345	NA	449.0037829	M4	0.914285714	0.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.2	311	0	0	NA	10qD3	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	sgMsh2	cell line
chr10	107023690	107023690	GC	G	ENSMUST00000165067.8	5	ENSMUSG00000035948	FS	G/X	349	Acss3	ENSMUST00000165067.8:c.1047del	ENSMUSP00000128209.1:p.Pro350LeufsTer61	H-2-Kb	9	40	0	QSMEWLPCL	NA	SMM	264.917	NA	NA	80	0.212	352.973	NA	NA	NA	379.17	NA	483.9	NA	264.9171047	NA	326.7758854	M4	0.857142857	0.857142857	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.239	80	0	0	NA	10qD1	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr11	58757857	58757857	G	A	ENSMUST00000215071.1	5	ENSMUSG00000107677	missense	S/N	64	Olfr316	ENSMUST00000215071.1:c.191G>A	ENSMUSP00000151136.1:p.Ser64Asn	H-2-Kb	9	5	7	PMYFLLNQL	PMYFLLSQL	SMM	69.841	60.969	0.873	400	0.087	256.406	183.625	0.716	298.82	430.35	478.1	884.5	60.9691303	69.84092778	68.43054518	82.46126636	M4	0.842857143	0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.086	400	0	0	NA	11qB1.3	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	0.380412376	sgMsh2	cell line
chr11	64436143	64436143	T	C	ENSMUST00000058652.5	1	ENSMUSG00000047759	missense	L/S	26	Hs3st3a1	ENSMUST00000058652.5:c.77T>C	ENSMUSP00000055930.5:p.Leu26Ser	H-2-Kb	9	4	8	RSIFRKFSL	RSIFRKFLL	NetMHCpan	244.9	254.6	1.04	24	0.333	442.767	344.942	0.779	383.3	454.76	254.6	244.9	338.9299909	463.5643185	350.9538411	430.7745129	M4	0.671428571	0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.317	24	0	0	NA	11qB3	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr10	130472110	130472110	CA	C	ENSMUST00000164227.3	5	ENSMUSG00000091511	FS	L/X	753	Vmn2r87	ENSMUST00000164227.3:c.2258del	ENSMUSP00000129215.2:p.Leu753TrpfsTer25	H-2-Kb	9	17	0	LWLSWLGTF	NA	SMM	245.533	NA	NA	311	0.203	456.634	NA	NA	NA	499.03	NA	2307.2	NA	245.5330734	NA	414.2380608	M4	1.085714286	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.2	311	0	0	NA	10qD3	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	sgMsh2	cell line
chr11	70681057	70681057	CG	C	ENSMUST00000036299.13	1	ENSMUSG00000040712	FS	P/X	476	Camta2	ENSMUST00000036299.13:c.1427del	ENSMUSP00000043792.7:p.Pro476ArgfsTer64	H-2-Db	9	50	0	TSWENSSVM	NA	NetMHCpan	74.1	NA	NA	52	0.269	94.741	NA	NA	NA	75.57	NA	74.1	NA	129.903245	NA	113.9121372	M4	-0.485714286	-0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.274	52	19	4	0.210526316	11qB3	chr11-69590981-82929860	4	4	0	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr11	120647724	120647724	G	A	ENSMUST00000026134.2	1	ENSMUSG00000025141	missense	A/V	95	Myadml2	ENSMUST00000026134.2:c.284C>T	ENSMUSP00000026134.2:p.Ala95Val	H-2-Db	9	5	7	AAFAMLVTL	AAFAMLATL	SMMPMBEC	121.219	101.758	0.839	50	0.14	161.774	123.054	0.761	364.73	357	114.7	156.2	131.4074537	167.3477972	101.7583368	121.2188055	M4	2.514285714	2.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.152	50	0	0	NA	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	0.672356757	sgMsh2	cell line
chr11	95969851	95969851	T	G	ENSMUST00000013559.2	1	ENSMUSG00000013415	missense	S/R	359	Igf2bp1	ENSMUST00000013559.2:c.1075A>C	ENSMUSP00000013559.2:p.Ser359Arg	H-2-Db	9	8	4	AAMRLQSHL	AAMSLQSHL	SMM	336.217	330.842	0.984	72	0.319	466.447	489.283	1.049	583.59	561.66	681.7	531.5	330.8415143	336.2172565	394.9753567	401.39319	M4	-0.357142857	0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.308	72	56	18	0.321428571	11qD	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr11	84897560	84897560	A	G	ENSMUST00000093969.10	5	ENSMUSG00000020527	missense	T/A	333	Myo19	ENSMUST00000093969.10:c.997A>G	ENSMUSP00000091502.4:p.Thr333Ala	H-2-Kb	8	7	5	VSVRASAL	VSVRTSAL	NetMHC	34.5	51.46	1.492	25	0.28	81.268	107.865	1.327	51.46	34.5	210.1	150.6	110.5961477	75.29046857	105.1332282	87.24489012	M4	0.785714286	0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.309	25	14	2	0.142857143	11qC	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr11	114696809	114696809	G	T	ENSMUST00000045779.5	1	ENSMUSG00000034714	missense	R/M	212	Ttyh2	ENSMUST00000045779.5:c.635G>T	ENSMUSP00000037821.5:p.Arg212Met	H-2-Kb	8	11	1	MWLSYLLL	RWLSYLLL	SMM	137.639	273.363	1.986	20	0.35	143.84	275.265	1.914	258.53	142.89	280.2	165.5	273.3631687	137.6385219	277.1660292	144.7904774	M4	1.742857143	1.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.323	20	42	3	0.071428571	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr11	114696809	114696809	G	T	ENSMUST00000045779.5	1	ENSMUSG00000034714	missense	R/M	212	Ttyh2	ENSMUST00000045779.5:c.635G>T	ENSMUSP00000037821.5:p.Arg212Met	H-2-Kb	8	4	8	TAYVEYYM	TAYVEYYR	NetMHCpan	83.9	3075.7	36.659	20	0.35	265.145	2936.503	11.075	5416.13	183.76	3075.7	83.9	2493.10173	447.4453509	2797.306149	346.5293309	M4	0.071428571	0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.323	20	42	3	0.071428571	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr11	73814764	73814764	A	C	ENSMUST00000144724.2	2	ENSMUSG00000061984	missense	V/G	106	Olfr392	ENSMUST00000144724.2:c.317T>G	ENSMUSP00000123649.2:p.Val106Gly	H-2-Kb	8	5	7	QLYFFMGF	QLYFFMVF	NetMHCpan	184	485.3	2.638	284	0.222	339.319	887.979	2.617	1079.75	205.77	485.3	184	838.9575756	472.8680813	937.0008827	504.3592613	M4	1.771428571	1.771428571	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	284	0	0	NA	11qB4	chr11-69590981-82929860	4	4	0	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr11	72058021	72058021	G	A	ENSMUST00000075258.12	1	ENSMUSG00000040543	missense	R/W	769	Pitpnm3	ENSMUST00000075258.12:c.2305C>T	ENSMUSP00000074737.6:p.Arg769Trp	H-2-Kb	8	9	3	VVWHWQDL	VVRHWQDL	NetMHCpan	164	1200.7	7.321	89	0.146	222.002	907.754	4.089	1202.31	270.69	1200.7	164	614.8086937	260.4593785	592.570463	183.5439188	M4	-0.571428571	-0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.159	89	1	0	0	11qB4	chr11-69590981-82929860	4	4	0	0.99	4.379165722	NA	1	0.703320555	sgMsh2	cell line
chr11	101077059	101077059	A	C	ENSMUST00000001802.9	1	ENSMUSG00000001751	missense	S/R	612	Naglu	ENSMUST00000001802.9:c.1834A>C	ENSMUSP00000001802.9:p.Ser612Arg	H-2-Kb	8	8	4	ASSRHFLL	ASSSHFLL	NetMHCpan	315.8	486.5	1.541	45	0.156	381.323	598.031	1.568	722.74	380.05	486.5	315.8	569.823033	382.5956254	626.2388407	413.7518989	M4	0.157142857	0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.167	45	44	13	0.295454545	11qD	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	0.738707753	sgMsh2	cell line
chr11	70681057	70681057	CG	C	ENSMUST00000036299.13	1	ENSMUSG00000040712	FS	P/X	476	Camta2	ENSMUST00000036299.13:c.1427del	ENSMUSP00000043792.7:p.Pro476ArgfsTer64	H-2-Kb	8	43	0	SVFRHSQT	NA	SMMPMBEC	294.944	NA	NA	52	0.269	447.523	NA	NA	NA	448.63	NA	1184.2	NA	446.4162552	NA	294.9442949	M4	-0.814285714	-0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.274	52	19	4	0.210526316	11qB3	chr11-69590981-82929860	4	4	0	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr11	117772845	117772845	T	C	ENSMUST00000026659.9	1	ENSMUSG00000025572	missense	I/V	514	Tmc6	ENSMUST00000026659.9:c.1540A>G	ENSMUSP00000026659.3:p.Ile514Val	H-2-Kb	8	10	2	LVLKMAVL	LILKMAVL	SMMPMBEC	395.13	281.67	0.713	62	0.145	457.257	401.56	0.878	565.93	825.08	490.7	423.9	312.4208431	490.6140712	281.6696149	395.1299959	M4	2.257142857	2.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.153	62	28	5	0.178571429	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	0.676780157	sgMsh2	cell line
chr11	84897560	84897560	A	G	ENSMUST00000093969.10	5	ENSMUSG00000020527	missense	T/A	333	Myo19	ENSMUST00000093969.10:c.997A>G	ENSMUSP00000091502.4:p.Thr333Ala	H-2-Kb	9	7	5	VSVRASALL	VSVRTSALL	NetMHC	40.67	34.63	0.851	25	0.28	193.843	186.865	0.964	34.63	40.67	157.9	128.8	215.8291001	258.8868552	342.1763584	383.0451784	M4	1.442857143	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.309	25	14	2	0.142857143	11qC	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr11	73814764	73814764	A	C	ENSMUST00000144724.2	2	ENSMUSG00000061984	missense	V/G	106	Olfr392	ENSMUST00000144724.2:c.317T>G	ENSMUSP00000123649.2:p.Val106Gly	H-2-Kb	9	4	8	TQLYFFMGF	TQLYFFMVF	NetMHC	59.64	327.61	5.493	284	0.222	153.478	304.481	1.984	327.61	59.64	372.3	124.1	279.3251239	182.8563304	281.3519957	226.073678	M4	1.771428571	1.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	284	0	0	NA	11qB4	chr11-69590981-82929860	4	4	0	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr11	98397994	98397994	G	A	ENSMUST00000090827.11	1	ENSMUSG00000038208	missense	L/F	112	Pgap3	ENSMUST00000090827.11:c.334C>T	ENSMUSP00000088337.5:p.Leu112Phe	H-2-Kb	9	7	5	AVASFLNGL	AVASLLNGL	NetMHC	84.75	1444.96	17.05	49	0.224	141.055	1231.037	8.727	1444.96	84.75	1359.9	113.8	618.1729539	168.310031	1102.173589	338.259498	M4	1.071428571	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.239	49	17	2	0.117647059	11qD	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr11	120134832	120134832	A	G	ENSMUST00000103018.10	1	ENSMUSG00000061306	missense	M/T	226	Slc38a10	ENSMUST00000103018.10:c.677T>C	ENSMUSP00000099307.4:p.Met226Thr	H-2-Kb	9	11	1	TSSIFASSL	MSSIFASSL	NetMHCpan	80.7	63.8	0.791	130	0.223	321.872	325.304	1.011	80.3	100.18	63.8	80.7	570.3087043	561.1900987	641.5787927	543.5631415	M4	1.5	1.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.218	130	77	29	0.376623377	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	0.964301139	sgMsh2	cell line
chr11	114696809	114696809	G	T	ENSMUST00000045779.5	1	ENSMUSG00000034714	missense	R/M	212	Ttyh2	ENSMUST00000045779.5:c.635G>T	ENSMUSP00000037821.5:p.Arg212Met	H-2-Kb	9	10	2	YMWLSYLLL	YRWLSYLLL	SMM	69.36	480.961	6.934	20	0.35	102.668	740.986	7.217	923.3	117.18	914.1	231.9	480.961153	69.36014622	567.8714044	88.15561915	M4	1.742857143	1.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.323	20	42	3	0.071428571	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr11	120647724	120647724	G	A	ENSMUST00000026134.2	1	ENSMUSG00000025141	missense	A/V	95	Myadml2	ENSMUST00000026134.2:c.284C>T	ENSMUSP00000026134.2:p.Ala95Val	H-2-Kb	9	5	7	AAFAMLVTL	AAFAMLATL	NetMHCpan	97.7	32.7	0.335	50	0.14	163.882	76.756	0.468	31.07	153.54	32.7	97.7	120.8119794	174.2248102	129.4941055	175.4890407	M4	2.514285714	2.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.152	50	0	0	NA	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	0.672356757	sgMsh2	cell line
chr11	116047690	116047690	T	C	ENSMUST00000021116.11	1	ENSMUSG00000020770	missense	F/L	40	Unk	ENSMUST00000021116.11:c.118T>C	ENSMUSP00000021116.5:p.Phe40Leu	H-2-Kb	9	3	9	QHYTYLKEL	QHYTYLKEF	NetMHC	157.48	600.28	3.812	92	0.239	176.351	480.118	2.723	600.28	157.48	601.2	194.9	266.1399065	157.8010905	359.9564831	208.0894201	M4	-0.442857143	-0.442857143	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.259	92	19	1	0.052631579	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr11	95969851	95969851	T	G	ENSMUST00000013559.2	1	ENSMUSG00000013415	missense	S/R	359	Igf2bp1	ENSMUST00000013559.2:c.1075A>C	ENSMUSP00000013559.2:p.Ser359Arg	H-2-Kb	9	8	4	AAMRLQSHL	AAMSLQSHL	NetMHC	159.08	222.94	1.401	72	0.319	409.595	316.523	0.773	222.94	159.08	226.5	212.3	406.5462879	606.8900259	544.816184	635.696763	M4	-0.357142857	0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.308	72	56	18	0.321428571	11qD	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr11	96961460	96961460	T	C	ENSMUST00000107624.7	1	ENSMUSG00000018678	missense	T/A	213	Sp2	ENSMUST00000107624.7:c.637A>G	ENSMUSP00000103250.2:p.Thr213Ala	H-2-Kb	9	6	6	SNMTLALPL	SNMTLTLPL	NetMHCpan	73.5	82.5	1.122	59	0.136	297.632	247.629	0.832	173.07	174.43	82.5	73.5	322.1884741	420.8332054	339.0392667	472.3348608	M4	1.828571429	1.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.152	59	10	2	0.2	11qD	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	0.672356757	sgMsh2	cell line
chr11	76066765	76066765	G	T	ENSMUST00000056601.10	1	ENSMUSG00000017288	missense	T/K	664	Vps53	ENSMUST00000056601.10:c.1991C>A	ENSMUSP00000061317.4:p.Thr664Lys	H-2-Kb	9	5	7	STRKYFKQF	STRKYFTQF	NetMHC	208.33	76.27	0.366	231	0.225	257.978	114.528	0.444	76.27	208.33	90.3	309.4	167.1513929	278.6826939	138.755434	237.2739171	M4	-1.642857143	-1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.225	231	135	36	0.266666667	11qB5	chr11-69590981-82929860	4	4	0	0.99	4.379165722	NA	1	0.995264937	sgMsh2	cell line
chr11	87035223	87035223	T	C	ENSMUST00000020804.7	1	ENSMUSG00000061666	missense	T/A	299	Gdpd1	ENSMUST00000020804.7:c.895A>G	ENSMUSP00000020804.7:p.Thr299Ala	H-2-Kb	9	9	3	VMADYPTKL	VMTDYPTKL	NetMHCpan	134	233	1.739	75	0.187	178.725	248.628	1.391	288.51	222.06	233	134	258.8868552	177.8729877	238.3691237	179.5767056	M4	-0.771428571	0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.205	75	138	50	0.362318841	11qC	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	0.906796942	sgMsh2	cell line
chr11	69944246	69944246	A	G	ENSMUST00000018710.12	1	ENSMUSG00000018566	missense	M/T	380	Slc2a4	ENSMUST00000018710.12:c.1139T>C	ENSMUSP00000018710.6:p.Met380Thr	H-2-Kb	9	11	1	TSYVSIVAI	MSYVSIVAI	NetMHCpan	173.5	137.8	0.794	37	0.189	288.038	313.641	1.089	235.44	232.32	137.8	173.5	391.8411118	385.5760057	405.7420321	343.7557727	M4	2.442857143	2.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.222	37	0	0	NA	11qB3	chr11-69590981-82929860	4	4	0	0.99	4.379165722	NA	1	0.981994738	sgMsh2	cell line
chr11	114696809	114696809	G	T	ENSMUST00000045779.5	1	ENSMUSG00000034714	missense	R/M	212	Ttyh2	ENSMUST00000045779.5:c.635G>T	ENSMUSP00000037821.5:p.Arg212Met	H-2-Kb	9	11	1	MWLSYLLLF	RWLSYLLLF	SMM	95.964	182.436	1.901	20	0.35	257.265	431.065	1.676	474.65	306.44	1518.2	1790.2	182.4357725	95.96436635	387.4806325	208.0894201	M4	2.271428571	2.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.323	20	42	3	0.071428571	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr11	114696809	114696809	G	T	ENSMUST00000045779.5	1	ENSMUSG00000034714	missense	R/M	212	Ttyh2	ENSMUST00000045779.5:c.635G>T	ENSMUSP00000037821.5:p.Arg212Met	H-2-Kb	9	4	8	TAYVEYYMW	TAYVEYYRW	SMMPMBEC	259.567	205.707	0.793	20	0.35	322.139	237.543	0.737	228.42	336.59	918.1	1252.7	246.6664026	307.6876041	205.7074402	259.5673122	M4	-0.314285714	0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.323	20	42	3	0.071428571	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr11	114696809	114696809	G	T	ENSMUST00000045779.5	1	ENSMUSG00000034714	missense	R/M	212	Ttyh2	ENSMUST00000045779.5:c.635G>T	ENSMUSP00000037821.5:p.Arg212Met	H-2-Kb	9	5	7	AYVEYYMWL	AYVEYYRWL	SMM	155.995	227.044	1.455	20	0.35	197.912	264.024	1.334	442.35	403.86	283	232.8	227.0439846	155.9947563	245.0473442	163.0234201	M4	0.414285714	0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.323	20	42	3	0.071428571	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr11	114696809	114696809	G	T	ENSMUST00000045779.5	1	ENSMUSG00000034714	missense	R/M	212	Ttyh2	ENSMUST00000045779.5:c.635G>T	ENSMUSP00000037821.5:p.Arg212Met	H-2-Kb	9	8	4	EYYMWLSYL	EYYRWLSYL	SMM	195.934	237.744	1.213	20	0.35	255.051	250.159	0.981	416.04	419.64	215.5	310	237.7442379	195.9340881	262.57296	200.1013414	M4	0.742857143	0.742857143	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.323	20	42	3	0.071428571	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr11	100696986	100696986	G	A	ENSMUST00000017974.12	1	ENSMUSG00000017830	missense	P/S	582	Dhx58	ENSMUST00000017974.12:c.1744C>T	ENSMUSP00000017974.6:p.Pro582Ser	H-2-Kb	9	11	1	SNFSVYYTT	PNFSVYYTT	SMM	351.649	851.354	2.421	36	0.278	419.758	4360.248	10.388	7816.41	564.55	7509.2	365	851.3536455	351.6494966	1211.29521	474.5150595	M4	0.314285714	0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.285	36	0	0	NA	11qD	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr11	114987405	114987405	T	G	ENSMUST00000045075.2	1	ENSMUSG00000034641	missense	T/P	94	Cd300ld	ENSMUST00000045075.2:c.280A>C	ENSMUSP00000047022.2:p.Thr94Pro	H-2-Kb	9	4	8	RDFIFTVPM	RDFIFTVTM	SMMPMBEC	413.285	752.056	1.82	281	0.224	465.648	927.044	1.991	2749.39	1529.58	988.9	447	865.1870294	484.2950164	752.0556875	413.2853397	M4	1.985714286	1.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.222	281	0	0	NA	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	0.981994738	sgMsh2	cell line
chr12	117995212	117995212	C	A	ENSMUST00000084806.6	1	ENSMUSG00000018581	missense	A/S	2979	Dnah11	ENSMUST00000084806.6:c.8935G>T	ENSMUSP00000081867.6:p.Ala2979Ser	H-2-Db	9	4	8	PAIVNCTSI	PAIVNCTAI	SMM	31.741	24.078	0.759	28	0.107	63.686	44.099	0.692	55.42	82.85	205.9	234.8	24.07797726	31.74095578	32.77706029	44.52152174	M4	1.528571429	1.528571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.155	28	0	0	NA	12qF2	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.685626956	sgMsh2	cell line
chr12	69190025	69190025	GT	G	ENSMUST00000021356.5	1	ENSMUSG00000020973	FS	T/X	770	Dnaaf2	ENSMUST00000021356.5:c.2308del	ENSMUSP00000021356.5:p.Thr770LeufsTer12	H-2-Db	9	5	7	SSLLNKLWF	SSLLNKTVV	NetMHC	102.74	8.12	0.079	274	0.175	148.467	27.724	0.187	8.12	102.74	17.2	273.1	38.24899249	138.2356312	40.41755147	158.6974688	M4	0.842857143	0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.195	274	104	14	0.134615385	12qC2	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.862562945	sgMsh2	cell line
chr12	117974938	117974938	G	A	ENSMUST00000084806.6	1	ENSMUSG00000018581	missense	A/V	3265	Dnah11	ENSMUST00000084806.6:c.9794C>T	ENSMUSP00000081867.6:p.Ala3265Val	H-2-Kb	8	7	5	KSFAVAGL	KSFAAAGL	NetMHC	11.66	16.83	1.443	127	0.165	23.502	30.038	1.278	16.83	11.66	34.2	31.4	28.6906244	22.52890066	31.38629122	24.47597495	M4	1.885714286	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.175	127	0	0	NA	12qF2	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.774094951	sgMsh2	cell line
chr12	98275382	98275382	T	C	ENSMUST00000075072.5	1	ENSMUSG00000021886	missense	M/T	98	Gpr65	ENSMUST00000075072.5:c.293T>C	ENSMUSP00000074581.4:p.Met98Thr	H-2-Kb	8	6	6	VFFTYTNF	VFFTYMNF	SMMPMBEC	20.358	18.019	0.885	286	0.14	21.686	17.92	0.826	17.82	22.25	45.7	37.4	16.50973111	21.12224132	18.01938647	20.35822922	M4	0.314285714	0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.144	286	0	0	NA	12qE	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.636969559	sgMsh2	cell line
chr12	55739346	55739346	CT	C	ENSMUST00000085385.6	1	ENSMUSG00000021027	FS	K/X	696	Ralgapa1	ENSMUST00000085385.6:c.2087del	ENSMUSP00000082503.5:p.Lys696SerfsTer34	H-2-Kb	8	19	0	TNFRKFQL	NA	NetMHCpan	27.5	NA	NA	143	0.112	84.75	NA	NA	NA	28.33	NA	27.5	NA	164.7175978	NA	141.1692151	M4	-0.857142857	-0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1119	143	56	1	0.017857143	12qC1	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.494978429	sgMsh2	cell line
chr12	108361203	108361203	T	C	ENSMUST00000021684.5	1	ENSMUSG00000021259	missense	F/L	425	Cyp46a1	ENSMUST00000021684.5:c.1273T>C	ENSMUSP00000021684.4:p.Phe425Leu	H-2-Kb	8	11	1	LTYFPFSL	FTYFPFSL	NetMHCpan	22.8	31.8	1.395	125	0.208	102.142	85.132	0.833	67.05	60.82	31.8	22.8	103.2143305	143.4630303	134.1961326	157.666708	M4	0.714285714	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.219	125	0	0	NA	12qF1	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.968724538	sgMsh2	cell line
chr12	75716177	75716177	C	A	ENSMUST00000021450.5	1	ENSMUSG00000021054	missense	G/V	410	Sgpp1	ENSMUST00000021450.5:c.1229G>T	ENSMUSP00000021450.4:p.Gly410Val	H-2-Kb	8	8	4	ITYVMVGF	ITYGMVGF	NetMHCpan	71.7	131.8	1.838	183	0.186	126.749	402.15	3.173	373.04	92.9	131.8	71.7	585.787365	231.6007706	431.2608157	160.597951	M4	1.528571429	1.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.19	183	44	8	0.181818182	12qC3	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.840445947	sgMsh2	cell line
chr12	31709074	31709074	T	C	ENSMUST00000236002.1	NA	ENSMUSG00000044067	missense	M/V	350	Gpr22	ENSMUST00000236002.1:c.1048A>G	ENSMUSP00000158030.1:p.Met350Val	H-2-Kb	8	7	5	RVFKVSLL	RVFKMSLL	NetMHCpan	110.6	49	0.443	279	0.194	180.435	110.426	0.612	64.99	136.1	49	110.6	166.241711	224.7708563	155.8619122	233.2061504	M4	2.014285714	2.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.197	279	0	0	NA	12qA3	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.871409745	sgMsh2	cell line
chr12	24955384	24955384	T	C	ENSMUST00000110942.10	1	ENSMUSG00000020646	missense	V/A	386	Mboat2	ENSMUST00000110942.10:c.1157T>C	ENSMUSP00000106567.3:p.Val386Ala	H-2-Kb	8	5	7	LTFLTGAL	LTFLTGVL	SMMPMBEC	126.398	284.276	2.249	234	0.137	148.313	332.574	2.242	970.17	184.97	290.4	137.5	374.7485835	159.1255801	284.2758718	126.3979412	M4	1.485714286	1.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.144	234	159	36	0.226415094	12qA1.3	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.636969559	sgMsh2	cell line
chr12	69190025	69190025	GT	G	ENSMUST00000021356.5	1	ENSMUSG00000020973	FS	T/X	770	Dnaaf2	ENSMUST00000021356.5:c.2308del	ENSMUSP00000021356.5:p.Thr770LeufsTer12	H-2-Kb	8	14	0	KTYLTLTL	NA	NetMHCpan	98.5	NA	NA	274	0.175	204.29	NA	NA	NA	217.21	NA	98.5	NA	205.466016	NA	203.114066	M4	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.195	274	104	14	0.134615385	12qC2	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.862562945	sgMsh2	cell line
chr12	103104843	103104843	CA	C	ENSMUST00000101099.11	1	ENSMUSG00000021198	FS	Q/X	1330	Unc79	ENSMUST00000101099.11:c.3994del	ENSMUSP00000098659.5:p.Met1332CysfsTer59	H-2-Kb	8	32	0	ITLTWANT	NA	SMMPMBEC	112.912	NA	NA	210	0.138	220.203	NA	NA	NA	238.69	NA	942.4	NA	201.7158386	NA	112.911974	M4	-0.128571429	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.14	210	0	0	NA	12qE	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.619275961	sgMsh2	cell line
chr12	72556654	72556654	T	A	ENSMUST00000044352.7	1	ENSMUSG00000034501	missense	S/T	489	Pcnx4	ENSMUST00000044352.7:c.1465T>A	ENSMUSP00000038916.6:p.Ser489Thr	H-2-Kb	8	10	2	VTIGFTRA	VSIGFTRA	SMMPMBEC	216.641	129.64	0.598	277	0.17	273.909	146.801	0.536	79.74	275.71	178.1	397.8	163.9607892	272.1071791	129.6402918	216.6406749	M4	0.4	0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.172	277	46	7	0.152173913	12qC3	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.760824752	sgMsh2	cell line
chr12	79261656	79261656	C	T	ENSMUST00000021547.7	1	ENSMUSG00000066440	missense	D/N	1705	Zfyve26	ENSMUST00000021547.7:c.5113G>A	ENSMUSP00000021547.6:p.Asp1705Asn	H-2-Kb	8	6	6	IGFTLNEV	IGFTLDEV	NetMHCpan	303.9	1187.3	3.907	134	0.201	375.252	970.102	2.585	1333.11	383.96	1187.3	303.9	696.209588	367.908651	752.9046857	382.5956254	M4	0.385714286	0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.192	134	26	2	0.076923077	12qC3	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.849292746	sgMsh2	cell line
chr12	54685943	54685943	TG	T	ENSMUST00000161592.7	1	ENSMUSG00000054302	FS	H/X	127	Eapp	ENSMUST00000161592.7:c.381del	ENSMUSP00000123698.1:p.His127GlnfsTer52	H-2-Kb	8	53	0	SLFQTVML	NA	SMMPMBEC	306.719	NA	NA	165	0.315	372.068	NA	NA	NA	617.01	NA	379.6	NA	364.5356443	NA	306.71852	M4	1.757142857	1.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.331	165	293	92	0.313993174	12qC1	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	2	1	sgMsh2	cell line
chr12	31708932	31708932	A	G	ENSMUST00000236002.1	NA	ENSMUSG00000044067	missense	I/T	397	Gpr22	ENSMUST00000236002.1:c.1190T>C	ENSMUSP00000158030.1:p.Ile397Thr	H-2-Kb	8	8	4	GTTTFHPL	GTTIFHPL	SMMPMBEC	181.443	200.789	1.107	358	0.184	344.511	294.142	0.854	1035.85	893.41	338.4	454.2	249.8848923	234.8226582	200.7890385	181.4429089	M4	-0.042857143	-0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.18	358	0	0	NA	12qA3	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.796211949	sgMsh2	cell line
chr12	98275382	98275382	T	C	ENSMUST00000075072.5	1	ENSMUSG00000021886	missense	M/T	98	Gpr65	ENSMUST00000075072.5:c.293T>C	ENSMUSP00000074581.4:p.Met98Thr	H-2-Kb	9	5	7	SVFFTYTNF	SVFFTYMNF	NetMHCpan	31	33.7	1.087	286	0.14	50.82	51.291	1.009	31.09	34.48	33.7	31	68.88267433	67.15989369	103.5738214	93.37916798	M4	0.314285714	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.144	286	0	0	NA	12qE	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.636969559	sgMsh2	cell line
chr12	31709410	31709410	T	C	ENSMUST00000236002.1	NA	ENSMUSG00000044067	missense	S/G	238	Gpr22	ENSMUST00000236002.1:c.712A>G	ENSMUSP00000158030.1:p.Ser238Gly	H-2-Kb	9	9	3	STGEYYTEL	STSEYYTEL	NetMHC	37.25	32.97	0.885	239	0.134	75.815	105.246	1.388	32.97	37.25	31.7	45.4	181.1798935	108.9205937	177.521108	106.2306894	M4	-0.985714286	-0.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.142	239	0	0	NA	12qA3	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.62812276	sgMsh2	cell line
chr12	55739346	55739346	CT	C	ENSMUST00000085385.6	1	ENSMUSG00000021027	FS	K/X	696	Ralgapa1	ENSMUST00000085385.6:c.2087del	ENSMUSP00000082503.5:p.Lys696SerfsTer34	H-2-Kb	9	35	0	VAISLARHL	NA	NetMHC	82.25	NA	NA	143	0.112	223.575	NA	NA	NA	82.25	NA	112.1	NA	335.0502914	NA	516.713728	M4	0.771428571	1.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1119	143	56	1	0.017857143	12qC1	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.494978429	sgMsh2	cell line
chr12	31547124	31547124	T	C	ENSMUST00000001253.7	1	ENSMUSG00000020651	missense	N/S	248	Slc26a4	ENSMUST00000001253.7:c.743A>G	ENSMUSP00000001253.7:p.Asn248Ser	H-2-Kb	9	5	7	VSTKNYSGI	VSTKNYNGI	NetMHC	120.76	277.9	2.301	167	0.144	269.151	316.632	1.176	277.9	120.76	586.2	300.6	296.558243	258.8868552	336.7053368	279.4151821	M4	-0.871428571	-0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.145	167	0	0	NA	12qA2	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.641392959	sgMsh2	cell line
chr12	69190025	69190025	GT	G	ENSMUST00000021356.5	1	ENSMUSG00000020973	FS	T/X	770	Dnaaf2	ENSMUST00000021356.5:c.2308del	ENSMUSP00000021356.5:p.Thr770LeufsTer12	H-2-Kb	9	11	1	LWFKTYLTL	NA	SMM	52.736	NA	NA	274	0.175	87.638	NA	NA	NA	123.24	NA	86.1	NA	52.73634174	NA	89.17641311	M4	0.542857143	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.195	274	104	14	0.134615385	12qC2	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.862562945	sgMsh2	cell line
chr12	72556654	72556654	T	A	ENSMUST00000044352.7	1	ENSMUSG00000034501	missense	S/T	489	Pcnx4	ENSMUST00000044352.7:c.1465T>A	ENSMUSP00000038916.6:p.Ser489Thr	H-2-Kb	9	10	2	VTIGFTRAF	VSIGFTRAF	NetMHC	135.99	77.66	0.571	277	0.17	241.68	150.693	0.624	77.66	135.99	132.3	200.8	169.0869148	282.5595563	216.3963843	351.7628732	M4	0.9	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.172	277	46	7	0.152173913	12qC3	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.760824752	sgMsh2	cell line
chr12	55739346	55739346	CT	C	ENSMUST00000085385.6	1	ENSMUSG00000021027	FS	K/X	696	Ralgapa1	ENSMUST00000085385.6:c.2087del	ENSMUSP00000082503.5:p.Lys696SerfsTer34	H-2-Kb	9	19	0	TNFRKFQLT	NA	NetMHC	137.91	NA	NA	143	0.112	191.978	NA	NA	NA	137.91	NA	202.3	NA	209.4642929	NA	181.6561058	M4	-0.457142857	-0.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1119	143	56	1	0.017857143	12qC1	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.494978429	sgMsh2	cell line
chr12	118008803	118008803	A	G	ENSMUST00000084806.6	1	ENSMUSG00000018581	missense	F/S	2882	Dnah11	ENSMUST00000084806.6:c.8645T>C	ENSMUSP00000081867.6:p.Phe2882Ser	H-2-Kb	9	10	2	VSLLTDAHV	VFLLTDAHV	NetMHC	151.93	528.66	3.48	273	0.19	432.793	838.709	1.938	528.66	151.93	3378.6	1196.3	713.0336075	385.5760057	964.3840079	480.0096849	M4	0.885714286	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.194	273	0	0	NA	12qF2	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.858139545	sgMsh2	cell line
chr12	75716177	75716177	C	A	ENSMUST00000021450.5	1	ENSMUSG00000021054	missense	G/V	410	Sgpp1	ENSMUST00000021450.5:c.1229G>T	ENSMUSP00000021450.4:p.Gly410Val	H-2-Kb	9	11	1	VMVGFSITF	GMVGFSITF	SMM	93.349	507.119	5.433	183	0.186	171.911	1429.349	8.314	2096.18	191.68	3962.6	381.5	507.1191374	93.34907095	762.5178243	152.1423079	M4	1.771428571	2.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.19	183	44	8	0.181818182	12qC3	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.840445947	sgMsh2	cell line
chr12	116318844	116318844	A	C	ENSMUST00000100986.3	1	ENSMUSG00000021171	missense	E/A	138	Esyt2	ENSMUST00000100986.3:c.413A>C	ENSMUSP00000098548.2:p.Glu138Ala	H-2-Kb	9	5	7	FICQFIAKL	FICQFIEKL	NetMHC	274.03	1858.1	6.781	185	0.13	434.65	1868.7	4.299	1858.1	274.03	1879.3	413	1888.469608	820.5593529	1023.882217	456.2995075	M4	1.142857143	2.2	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.133	185	284	34	0.11971831	12qF2	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.588312163	sgMsh2	cell line
chr12	111678648	111678648	A	G	ENSMUST00000084947.9	1	ENSMUSG00000060950	missense	Y/C	6	Trmt61a	ENSMUST00000084947.9:c.17A>G	ENSMUSP00000082011.3:p.Tyr6Cys	H-2-Kb	9	1	6	MSFVACEEL	MSFVAYEEL	NetMHCpan	242.1	23.8	0.098	103	0.117	359.464	57.617	0.16	18.72	290.27	23.8	242.1	91.43448014	428.6570788	121.6886295	527.5334467	M4	1.157142857	1.271428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.114	103	17	1	0.058823529	12qF1	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.504267568	sgMsh2	cell line
chr12	98275382	98275382	T	C	ENSMUST00000075072.5	1	ENSMUSG00000021886	missense	M/T	98	Gpr65	ENSMUST00000075072.5:c.293T>C	ENSMUSP00000074581.4:p.Met98Thr	H-2-Kb	9	11	1	TNFYSSTAF	MNFYSSTAF	SMM	318.5	323.676	1.016	286	0.14	365.539	317.878	0.87	312.08	327.2	253.8	411.6	323.6756285	318.5004131	476.7053215	403.8778168	M4	0.542857143	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.144	286	0	0	NA	12qE	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.636969559	sgMsh2	cell line
chr12	24955384	24955384	T	C	ENSMUST00000110942.10	1	ENSMUSG00000020646	missense	V/A	386	Mboat2	ENSMUST00000110942.10:c.1157T>C	ENSMUSP00000106567.3:p.Val386Ala	H-2-Kb	9	5	7	LTFLTGALM	LTFLTGVLM	NetMHC	354.25	977.61	2.76	234	0.137	486.696	929.583	1.91	977.61	354.25	1440.3	432.5	780.0276543	540.8913049	881.5561915	650.5040428	M4	1.857142857	1.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.144	234	159	36	0.226415094	12qA1.3	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.636969559	sgMsh2	cell line
chr12	51999859	51999859	T	G	ENSMUST00000021339.7	1	ENSMUSG00000020956	missense	N/H	66	Dtd2	ENSMUST00000021339.7:c.196A>C	ENSMUSP00000021339.7:p.Asn66His	H-2-Kb	9	6	6	VNTLLHVKL	VNTLLNVKL	NetMHCpan	212.6	1257.5	5.915	79	0.19	402.088	1117.492	2.779	1647.25	460.42	1257.5	212.6	977.4847712	462.4981501	708.3534281	343.7557727	M4	1.114285714	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.214	79	94	9	0.095744681	12qC1	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.94660754	sgMsh2	cell line
chr12	31709074	31709074	T	C	ENSMUST00000236002.1	NA	ENSMUSG00000044067	missense	M/V	350	Gpr22	ENSMUST00000236002.1:c.1048A>G	ENSMUSP00000158030.1:p.Met350Val	H-2-Kb	9	11	1	VSLLIISTF	MSLLIISTF	SMM	438.642	1124.89	2.564	279	0.194	487.155	1193.722	2.45	1504.4	503.46	1013	486.5	1124.889855	438.6417848	1262.55411	487.8092149	M4	2.557142857	2.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.197	279	0	0	NA	12qA3	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.871409745	sgMsh2	cell line
chr12	10394644	10394644	G	A	ENSMUST00000020947.6	1	ENSMUSG00000020621	missense	G/D	165	Rdh14	ENSMUST00000020947.6:c.494G>A	ENSMUSP00000020947.5:p.Gly165Asp	H-2-Kb	9	7	5	VNHLDHFLL	VNHLGHFLL	SMM	345.231	274.859	0.796	112	0.134	422.662	286.615	0.678	298.37	541.74	187.1	481.2	274.859024	345.2311699	307.0789168	364.1245828	M4	0.614285714	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.141	112	38	8	0.210526316	12qA1.1	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.62369936	sgMsh2	cell line
chr13	75878849	75878849	T	G	ENSMUST00000022078.11	1	ENSMUSG00000021589	missense	K/N	468	Rhobtb3	ENSMUST00000022078.11:c.1404A>C	ENSMUSP00000022078.5:p.Lys468Asn	H-2-Db	9	7	5	YGVSNETFL	YGVSKETFL	NetMHC	4.07	552.12	135.656	120	0.167	38.329	1708.94	44.587	552.12	4.07	1286.7	11.1	2131.179353	65.55714019	2236.505652	66.61468828	M4	0.328571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.168	120	49	16	0.326530612	13qC1	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	1	0.743131153	sgMsh2	cell line
chr14	45614188	45614188	T	C	ENSMUST00000087320.12	1	ENSMUSG00000037697	missense	Y/C	511	Ddhd1	ENSMUST00000087320.12:c.1532A>G	ENSMUSP00000084577.5:p.Tyr511Cys	H-2-Kb	8	8	4	IMYCTSPL	IMYYTSPL	NetMHC	11.28	6.72	0.596	132	0.174	26.327	19.907	0.756	6.72	11.28	8.5	16.2	35.54184757	37.30267702	31.31410475	36.45356443	M4	0.542857143	0.642857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.18	132	43	5	0.11627907	14qC1	chr14-7006943-52852156	4	2	2	0.99	4.379165722	NA	1	0.796211949	sgMsh2	cell line
chr14	29988224	29988224	G	T	ENSMUST00000224797.1	NA	ENSMUSG00000015971	missense	R/M	316	Actr8	ENSMUST00000224797.1:c.947G>T	ENSMUSP00000153076.1:p.Arg316Met	H-2-Kb	8	9	3	VSMCFYWL	VSRCFYWL	NetMHCpan	18	44.3	2.461	125	0.144	18.823	33.596	1.785	38.96	18.69	44.3	18	19.57672319	18.95570756	28.23189304	19.26371303	M4	1.142857143	1.2	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.155	125	53	9	0.169811321	14qB	chr14-7006943-52852156	4	2	2	0.99	4.379165722	NA	1	0.685626956	sgMsh2	cell line
chr14	52036009	52036009	A	G	ENSMUST00000214071.1	5	ENSMUSG00000044286	missense	M/T	34	Olfr221	ENSMUST00000214071.1:c.101T>C	ENSMUSP00000150675.1:p.Met34Thr	H-2-Kb	8	10	2	VTYAITVL	VMYAITVL	NetMHCpan	26.2	23.8	0.908	78	0.321	60.149	92.464	1.537	54.39	47.73	23.8	26.2	137.3219621	75.63799359	130.5389154	72.56713881	M4	1.657142857	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.301	78	0	0	NA	14qC2	chr14-7006943-52852156	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr13	22883342	22883342	G	T	ENSMUST00000095960.4	NA	ENSMUSG00000071490	missense	L/I	274	Vmn1r212	ENSMUST00000095960.4:c.820C>A	ENSMUSP00000093655.2:p.Leu274Ile	H-2-Kb	8	9	3	VTIGYATF	VTLGYATF	NetMHCpan	64.5	66.5	1.031	179	0.235	107.041	102.098	0.954	69.38	66.26	66.5	64.5	161.7111628	187.8192059	134.8155538	147.8223152	M4	0.857142857	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.225	179	0	0	NA	13qA3.1	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	1	0.995264937	sgMsh2	cell line
chr14	30565598	30565598	A	C	ENSMUST00000022529.7	1	ENSMUSG00000021957	missense	D/A	183	Tkt	ENSMUST00000022529.7:c.548A>C	ENSMUSP00000022529.6:p.Asp183Ala	H-2-Kb	8	8	4	AIFAINRL	AIFDINRL	NetMHCpan	63.2	123.2	1.949	69	0.188	133.004	297.159	2.234	429.52	121.55	123.2	63.2	314.5864409	164.7175978	279.7306149	144.4574685	M4	1.342857143	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	69	1130	267	0.236283186	14qB	chr14-7006943-52852156	4	2	2	0.99	4.379165722	NA	1	0.884679944	sgMsh2	cell line
chr13	104802182	104802182	A	G	ENSMUST00000022228.12	1	ENSMUSG00000021715	missense	F/L	207	Cwc27	ENSMUST00000022228.12:c.619T>C	ENSMUSP00000022228.6:p.Phe207Leu	H-2-Kb	8	4	8	KNFSLLSL	KNFSLLSF	NetMHCpan	39.6	396.9	10.023	25	0.28	125.944	1321.99	10.497	804.31	124.32	396.9	39.6	2073.671696	127.5674869	1839.670312	146.4670721	M4	1.3	1.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.308	25	55	13	0.236363636	13qD1	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr13	54221267	54221267	TC	T	ENSMUST00000038101.3	1	ENSMUSG00000034987	FS	S/X	374	Hrh2	ENSMUST00000038101.3:c.1122del	ENSMUSP00000038170.3:p.Phe375SerfsTer53	H-2-Kb	8	26	0	SNHHYISV	NA	NetMHCpan	84.2	NA	NA	56	0.339	192.438	NA	NA	NA	148.97	NA	84.2	NA	235.9065504	NA	249.310173	M4	-0.471428571	-0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.346	56	0	0	NA	13qB1	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	2	1	sgMsh2	cell line
chr14	30689749	30689749	T	C	ENSMUST00000064230.15	1	ENSMUSG00000052395	missense	L/S	418	Rft1	ENSMUST00000064230.15:c.1253T>C	ENSMUSP00000064153.7:p.Leu418Ser	H-2-Kb	8	11	1	SSYLLTSW	LSYLLTSW	SMM	154.789	389.709	2.518	121	0.264	261.666	695.416	2.658	814.41	239.71	1615.2	815	389.7086091	154.7889663	576.4212727	283.6220554	M4	0.442857143	0.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.26	121	23	9	0.391304348	14qB	chr14-7006943-52852156	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr13	22293541	22293541	T	C	ENSMUST00000228382.1	NA	ENSMUSG00000069295	missense	S/P	117	Vmn1r196	ENSMUST00000228382.1:c.349T>C	ENSMUSP00000154358.1:p.Ser117Pro	H-2-Kb	8	9	3	RAPWWGRL	RASWWGRL	NetMHCpan	195.9	896.8	4.578	186	0.253	341.715	1061.965	3.108	1423.61	271.58	896.8	195.9	1129.11974	421.444121	994.8096742	411.8508816	M4	-0.385714286	-0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.247	186	0	0	NA	13qA3.1	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr13	116910900	116910900	A	G	ENSMUST00000022239.7	5	ENSMUSG00000021725	missense	L/P	251	Parp8	ENSMUST00000022239.7:c.752T>C	ENSMUSP00000022239.6:p.Leu251Pro	H-2-Kb	8	8	4	IVRPHCSL	IVRLHCSL	SMM	192.637	101.097	0.525	165	0.261	278.151	113.701	0.409	111.86	291	203	380.5	101.0974031	192.6371303	115.5420317	265.3016799	M4	0.057142857	0.157142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.283	165	9	4	0.444444444	13qD2.3	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr14	30689749	30689749	T	C	ENSMUST00000064230.15	1	ENSMUSG00000052395	missense	L/S	418	Rft1	ENSMUST00000064230.15:c.1253T>C	ENSMUSP00000064153.7:p.Leu418Ser	H-2-Kb	8	7	5	SFLVSSYL	SFLVLSYL	SMM	227.898	126.398	0.555	121	0.264	321.389	141.31	0.44	125.8	325.28	236.3	468.7	126.3979412	227.8977303	156.221211	317.4972734	M4	1.671428571	1.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.26	121	23	9	0.391304348	14qB	chr14-7006943-52852156	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr13	34044506	34044506	C	A	ENSMUST00000040656.7	1	ENSMUSG00000038286	missense	L/I	64	Bphl	ENSMUST00000040656.7:c.190C>A	ENSMUSP00000046168.6:p.Leu64Ile	H-2-Kb	8	10	2	IILLPGML	ILLLPGML	SMM	211.709	874.46	4.13	118	0.254	288.425	1025.33	3.555	2214.79	330.96	1176.2	468.4	874.4601036	211.7093311	840.8915726	245.8895091	M4	2.257142857	2.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.265	118	69	14	0.202898551	13qA3.3	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr13	23011606	23011606	T	G	ENSMUST00000228758.1	NA	ENSMUSG00000060024	missense	W/G	120	Vmn1r213	ENSMUST00000228758.1:c.358T>G	ENSMUSP00000153766.1:p.Trp120Gly	H-2-Kb	8	4	8	VNYMFSWG	VNYMFSWW	SMM	41.951	30.251	0.721	308	0.221	132.529	48.549	0.366	42.05	378.12	321.7	205.8	30.25101842	41.95077612	55.04780419	59.2570463	M4	-0.314285714	0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.214	308	0	0	NA	13qA3.1	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	1	0.94660754	sgMsh2	cell line
chr13	24981025	24981025	T	C	ENSMUST00000021773.12	5	ENSMUSG00000021340	missense	S/P	583	Gpld1	ENSMUST00000021773.12:c.1747T>C	ENSMUSP00000021773.5:p.Ser583Pro	H-2-Kb	8	5	7	FSWFGYPL	FSWFGYSL	NetMHCpan	65.1	109.5	1.682	124	0.185	162.825	338.301	2.078	534.83	383.38	109.5	65.1	384.3616066	186.0972691	292.2402293	139.5532644	M4	0.228571429	0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.205	124	0	0	NA	13qA3.1	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	1	0.906796942	sgMsh2	cell line
chr14	23436016	23436016	TA	T	ENSMUST00000188285.6	1	ENSMUSG00000063142	FS	Y/X	680	Kcnma1	ENSMUST00000188285.6:c.2038del	ENSMUSP00000140275.1:p.Tyr680ThrfsTer31	H-2-Kb	8	8	4	AFFTARPV	NA	SMM	285.588	NA	NA	60	0.183	464.476	NA	NA	NA	585.6	NA	996.8	NA	285.5880296	NA	343.3523309	M4	0.685714286	0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.19	60	0	0	NA	14qA3	chr14-7006943-52852156	4	2	2	0.99	4.379165722	NA	1	0.840445947	sgMsh2	cell line
chr14	7818260	7818260	A	G	ENSMUST00000052678.8	5	ENSMUSG00000025278	missense	I/V	37	Flnb	ENSMUST00000052678.8:c.109A>G	ENSMUSP00000052020.8:p.Ile37Val	H-2-Kb	8	7	5	VNKRVGNL	VNKRIGNL	SMM	204.052	467.455	2.291	94	0.16	420.091	460.978	1.097	876.98	605.36	454.5	622.6	467.4552051	204.0515979	392.4099402	234.8226582	M4	-1.114285714	-1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.162	94	437	95	0.217391304	14qA1	chr14-7006943-52852156	4	2	2	0.99	4.379165722	NA	1	0.716590754	sgMsh2	cell line
chr13	22883342	22883342	G	T	ENSMUST00000095960.4	NA	ENSMUSG00000071490	missense	L/I	274	Vmn1r212	ENSMUST00000095960.4:c.820C>A	ENSMUSP00000093655.2:p.Leu274Ile	H-2-Kb	9	11	1	IGYATFSPL	LGYATFSPL	NetMHC	3.48	6.63	1.905	179	0.235	25.253	49.219	1.949	6.63	3.48	9.7	5.1	88.73807432	45.40566075	104.2917608	53.36419961	M4	0.571428571	0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.225	179	0	0	NA	13qA3.1	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	1	0.995264937	sgMsh2	cell line
chr14	30689749	30689749	T	C	ENSMUST00000064230.15	1	ENSMUSG00000052395	missense	L/S	418	Rft1	ENSMUST00000064230.15:c.1253T>C	ENSMUSP00000064153.7:p.Leu418Ser	H-2-Kb	9	6	6	SSFLVSSYL	SSFLVLSYL	NetMHC	28.11	20.29	0.722	121	0.264	83.787	68.187	0.814	20.29	28.11	28.7	29.5	107.67379	138.0733939	136.2228619	205.7074402	M4	1.671428571	1.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.26	121	23	9	0.391304348	14qB	chr14-7006943-52852156	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr13	8570039	8570039	A	C	ENSMUST00000064473.12	1	ENSMUSG00000052551	missense	K/T	187	Adarb2	ENSMUST00000064473.12:c.560A>C	ENSMUSP00000064775.6:p.Lys187Thr	H-2-Kb	9	11	1	TSFVQFPNA	KSFVQFPNA	NetMHC	55.09	95.18	1.728	43	0.209	267.019	400.309	1.499	95.18	55.09	169.5	119.8	631.1171763	416.0159675	731.5600821	414.2380608	M4	0.428571429	0.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.204	43	0	0	NA	13qA1	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	1	0.902373543	sgMsh2	cell line
chr14	29988224	29988224	G	T	ENSMUST00000224797.1	NA	ENSMUSG00000015971	missense	R/M	316	Actr8	ENSMUST00000224797.1:c.947G>T	ENSMUSP00000153076.1:p.Arg316Met	H-2-Kb	9	9	3	VSMCFYWLM	VSRCFYWLM	SMM	22.086	32.742	1.483	125	0.144	24.996	45.085	1.804	100.09	57.04	51.6	26.1	32.74236157	22.08564057	38.57003207	23.89186213	M4	1.528571429	1.528571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.155	125	53	9	0.169811321	14qB	chr14-7006943-52852156	4	2	2	0.99	4.379165722	NA	1	0.685626956	sgMsh2	cell line
chr13	67542395	67542395	TA	T	ENSMUST00000181892.8	1	ENSMUSG00000095432	FS	Y/X	249	Zfp748	ENSMUST00000181892.8:c.745del	ENSMUSP00000137928.1:p.Tyr249ThrfsTer47	H-2-Kb	9	44	0	VAMPFVHSI	NA	NetMHCpan	32.9	NA	NA	130	0.215	254.832	NA	NA	NA	98.41	NA	32.9	NA	411.2538721	NA	441.8247089	M4	1.114285714	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.221	130	28	6	0.214285714	13qB3	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	1	0.977571338	sgMsh2	cell line
chr13	54221267	54221267	TC	T	ENSMUST00000038101.3	1	ENSMUSG00000034987	FS	S/X	374	Hrh2	ENSMUST00000038101.3:c.1122del	ENSMUSP00000038170.3:p.Phe375SerfsTer53	H-2-Kb	9	26	0	SNHHYISVL	NA	NetMHCpan	68.7	NA	NA	56	0.339	178.271	NA	NA	NA	141.14	NA	68.7	NA	229.67303	NA	215.4021332	M4	0.571428571	0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.346	56	0	0	NA	13qB1	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	2	1	sgMsh2	cell line
chr14	50238124	50238124	A	G	ENSMUST00000214152.1	5	ENSMUSG00000048080	missense	C/R	254	Olfr731	ENSMUST00000214152.1:c.760T>C	ENSMUSP00000149395.1:p.Cys254Arg	H-2-Kb	9	3	9	VVLMFFGPR	VVLMFFGPC	NetMHC	150.05	54.95	0.366	166	0.241	267.278	139.416	0.522	54.95	150.05	181.9	2877.2	164.478827	239.9440583	114.3536418	294.6117067	M4	0.685714286	2.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.258	166	0	0	NA	14qC1	chr14-7006943-52852156	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr13	75878849	75878849	T	G	ENSMUST00000022078.11	1	ENSMUSG00000021589	missense	K/N	468	Rhobtb3	ENSMUST00000022078.11:c.1404A>C	ENSMUSP00000022078.5:p.Lys468Asn	H-2-Kb	9	10	2	SNETFLSFL	SKETFLSFL	NetMHC	152.36	2784.6	18.276	120	0.167	305.223	2383.314	7.808	2784.6	152.36	3434.7	227.4	1982.028979	421.8033261	1691.414308	383.0451784	M4	1.171428571	1.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.168	120	49	16	0.326530612	13qC1	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	1	0.743131153	sgMsh2	cell line
chr14	30565598	30565598	A	C	ENSMUST00000022529.7	1	ENSMUSG00000021957	missense	D/A	183	Tkt	ENSMUST00000022529.7:c.548A>C	ENSMUSP00000022529.6:p.Asp183Ala	H-2-Kb	9	7	5	VAIFAINRL	VAIFDINRL	NetMHCpan	105.3	537.5	5.104	69	0.188	203.936	485.56	2.381	877.91	173.39	537.5	105.3	433.6206938	234.4822647	361.6179668	276.8534884	M4	1.342857143	2.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	69	1130	267	0.236283186	14qB	chr14-7006943-52852156	4	2	2	0.99	4.379165722	NA	1	0.884679944	sgMsh2	cell line
chr14	34594872	34594872	T	C	ENSMUST00000022331.2	1	ENSMUSG00000021799	missense	Y/C	320	Opn4	ENSMUST00000022331.2:c.959A>G	ENSMUSP00000022331.2:p.Tyr320Cys	H-2-Kb	9	6	6	VAFAGCSHI	VAFAGYSHI	NetMHCpan	125.5	15.8	0.126	80	0.263	316.575	52.299	0.165	26.39	294.11	15.8	125.5	87.5205423	410.3080144	78.20778752	339.0392667	M4	1.028571429	1.7	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.29	80	0	0	NA	14qB	chr14-7006943-52852156	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr14	29170631	29170631	A	T	ENSMUST00000022567.8	1	ENSMUSG00000021991	missense	F/Y	418	Cacna2d3	ENSMUST00000022567.8:c.1253T>A	ENSMUSP00000022567.7:p.Phe418Tyr	H-2-Kb	9	6	6	ANKGFYTQI	ANKGFFTQI	NetMHCpan	153.5	133	0.866	125	0.144	222.545	313.745	1.41	417.88	298.99	133	153.5	384.6892055	273.5961615	242.8007366	171.4944225	M4	-0.357142857	-0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.157	125	0	0	NA	14qA3	chr14-7006943-52852156	4	2	2	0.99	4.379165722	NA	1	0.694473756	sgMsh2	cell line
chr14	50453867	50453867	G	T	ENSMUST00000214792.1	5	ENSMUSG00000095917	missense	A/S	272	Olfr740	ENSMUST00000214792.1:c.814G>T	ENSMUSP00000148916.1:p.Ala272Ser	H-2-Kb	9	11	1	SGMQKLVTL	AGMQKLVTL	NetMHCpan	247.6	429.1	1.733	201	0.224	423.556	718.749	1.697	707.62	313.47	429.1	247.6	968.523137	625.3310593	729.8775406	533.6419961	M4	0.8	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.231	201	0	0	NA	14qC1	chr14-7006943-52852156	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr13	75878849	75878849	T	G	ENSMUST00000022078.11	1	ENSMUSG00000021589	missense	K/N	468	Rhobtb3	ENSMUST00000022078.11:c.1404A>C	ENSMUSP00000022078.5:p.Lys468Asn	H-2-Kb	9	9	3	VSNETFLSF	VSKETFLSF	SMM	343.645	425.706	1.239	120	0.167	405.045	443.114	1.094	688.38	363.15	407.4	540.2	425.7062242	343.6449768	460.5215948	446.9407979	M4	0.128571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.168	120	49	16	0.326530612	13qC1	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	1	0.743131153	sgMsh2	cell line
chr14	52036009	52036009	A	G	ENSMUST00000214071.1	5	ENSMUSG00000044286	missense	M/T	34	Olfr221	ENSMUST00000214071.1:c.101T>C	ENSMUSP00000150675.1:p.Met34Thr	H-2-Kb	9	6	6	VVFLVTYAI	VVFLVMYAI	NetMHC	404.46	257.9	0.638	78	0.321	474.826	410.59	0.865	257.9	404.46	656.7	462	397.2921646	487.6519891	423.8869047	600.1364431	M4	2.157142857	2.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.301	78	0	0	NA	14qC2	chr14-7006943-52852156	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr13	22883342	22883342	G	T	ENSMUST00000095960.4	NA	ENSMUSG00000071490	missense	L/I	274	Vmn1r212	ENSMUST00000095960.4:c.820C>A	ENSMUSP00000093655.2:p.Leu274Ile	H-2-Kb	9	3	9	INIQEFVTI	INIQEFVTL	NetMHCpan	111.6	38.2	0.342	179	0.235	443.979	145.484	0.328	94.97	434.8	38.2	111.6	225.4810248	559.8993973	195.99726	453.1583638	M4	1.185714286	1.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.225	179	0	0	NA	13qA3.1	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	1	0.995264937	sgMsh2	cell line
chr13	8570039	8570039	A	C	ENSMUST00000064473.12	1	ENSMUSG00000052551	missense	K/T	187	Adarb2	ENSMUST00000064473.12:c.560A>C	ENSMUSP00000064775.6:p.Lys187Thr	H-2-Kb	9	8	4	MALTSFVQF	MALKSFVQF	NetMHCpan	388.9	396.9	1.021	43	0.209	447.109	470.87	1.053	571.83	490.34	396.9	388.9	532.243051	558.6116644	409.4963169	403.8778168	M4	1.228571429	1.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.204	43	0	0	NA	13qA1	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	1	0.902373543	sgMsh2	cell line
chr14	45614188	45614188	T	C	ENSMUST00000087320.12	1	ENSMUSG00000037697	missense	Y/C	511	Ddhd1	ENSMUST00000087320.12:c.1532A>G	ENSMUSP00000084577.5:p.Tyr511Cys	H-2-Kb	9	8	4	IMYCTSPLY	IMYYTSPLY	SMM	100.487	72.629	0.723	132	0.174	436.085	328.486	0.753	479.86	649.71	1452	1280.4	72.6289892	100.4870276	177.1128208	222.4590099	M4	0.085714286	0.642857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.18	132	43	5	0.11627907	14qC1	chr14-7006943-52852156	4	2	2	0.99	4.379165722	NA	1	0.796211949	sgMsh2	cell line
chr13	23011606	23011606	T	G	ENSMUST00000228758.1	NA	ENSMUSG00000060024	missense	W/G	120	Vmn1r213	ENSMUST00000228758.1:c.358T>G	ENSMUSP00000153766.1:p.Trp120Gly	H-2-Kb	9	4	8	VNYMFSWGG	VNYMFSWWG	SMM	170.259	216.825	1.274	308	0.221	340.638	1369.609	4.021	3744.21	879.44	2505.2	494.1	216.825322	170.2589693	234.0183969	187.1759302	M4	0.128571429	0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.214	308	0	0	NA	13qA3.1	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	1	0.94660754	sgMsh2	cell line
chr15	75597834	75597834	A	G	ENSMUST00000023243.10	1	ENSMUSG00000022579	missense	T/A	133	Gpihbp1	ENSMUST00000023243.10:c.397A>G	ENSMUSP00000023243.4:p.Thr133Ala	H-2-Db	9	10	2	SALCNIPPW	STLCNIPPW	SMMPMBEC	43.709	249.787	5.715	80	0.338	85.973	425.163	4.945	1274.99	88.65	308.8	114.3	541.5268566	83.29520473	249.7870966	43.70891238	M4	0.457142857	0.957142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.325	80	2	0	0	15qD3	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr15	42523589	42523589	T	C	ENSMUST00000022921.6	1	ENSMUSG00000022309	missense	H/R	123	Angpt1	ENSMUST00000022921.6:c.368A>G	ENSMUSP00000022921.5:p.His123Arg	H-2-Db	9	6	6	NAVQNRTAT	NAVQNHTAT	NetMHC	211.33	252.71	1.196	110	0.182	408.982	668.802	1.635	252.71	211.33	1892.9	3240.7	766.6903553	457.741196	570.9130891	360.2218066	M4	-0.985714286	-0.628571429	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.175	110	0	0	NA	15qB3.1	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	0.774094951	sgMsh2	cell line
chr14	103126690	103126690	A	T	ENSMUST00000159855.7	1	ENSMUSG00000033004	missense	L/Q	4391	Mycbp2	ENSMUST00000159855.7:c.13172T>A	ENSMUSP00000124710.1:p.Leu4391Gln	H-2-Kb	8	10	2	KQFWLMAL	KLFWLMAL	NetMHCpan	93.9	139.2	1.482	168	0.339	121.23	207.575	1.712	301.67	110.41	139.2	93.9	193.9724271	132.0504848	221.1770188	174.0764414	M4	1.385714286	1.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.328	168	81	7	0.086419753	14qE2.3	chr14-53294676-123299668	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr14	65975611	65975611	T	G	ENSMUST00000022616.13	1	ENSMUSG00000022037	missense	F/V	149	Clu	ENSMUST00000022616.13:c.445T>G	ENSMUSP00000022616.6:p.Phe149Val	H-2-Kb	8	8	4	SSPVYFWM	SSPFYFWM	NetMHCpan	60.6	40.4	0.667	114	0.254	147.752	201.93	1.367	223.25	116.55	40.4	60.6	180.6092545	178.9534189	234.2825811	206.8902384	M4	0.614285714	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.253	114	12111	2698	0.222772686	14qD1	chr14-53294676-123299668	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr14	88468805	88468805	AT	A	ENSMUST00000061628.6	1	ENSMUSG00000050505	FS	N/X	353	Pcdh20	ENSMUST00000061628.6:c.1058del	ENSMUSP00000054774.5:p.Asn353MetfsTer48	H-2-Kb	8	48	0	VSYRHISS	NA	SMM	41.471	NA	NA	122	0.246	102.465	NA	NA	NA	135.47	NA	241.9	NA	41.47056956	NA	69.46083504	M4	-0.985714286	-0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.263	122	0	0	NA	14qE1	chr14-53294676-123299668	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr14	123515710	123515710	C	A	ENSMUST00000000201.6	5	ENSMUSG00000000197	missense	R/I	288	Nalcn	ENSMUST00000000201.6:c.863G>T	ENSMUSP00000000201.5:p.Arg288Ile	H-2-Kb	8	6	6	VFLMYIAI	VFLMYRAI	SMM	80.675	70.265	0.871	84	0.31	117.27	70.672	0.603	62.95	152.93	94.9	239.3	70.26515361	80.67519058	71.07878574	81.60936526	M4	2.571428571	2.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.309	84	0	0	NA	14qE5	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	sgMsh2	cell line
chr14	66004100	66004100	T	A	ENSMUST00000059970.8	1	ENSMUSG00000034450	missense	H/L	103	Gulo	ENSMUST00000059970.8:c.308A>T	ENSMUSP00000060912.7:p.His103Leu	H-2-Kb	8	11	1	LGLALSNL	HGLALSNL	NetMHC	204.75	1235.08	6.032	63	0.254	230.187	887.134	3.854	1235.08	204.75	1375.1	217.3	539.1877292	243.0748352	512.5544401	245.8895091	M4	1.214285714	1.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.263	63	0	0	NA	14qD1	chr14-53294676-123299668	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr15	3325898	3325898	C	A	ENSMUST00000069451.10	1	ENSMUSG00000055737	missense	R/M	301	Ghr	ENSMUST00000069451.10:c.902G>T	ENSMUSP00000069457.4:p.Arg301Met	H-2-Kb	8	4	8	VIFSKQQM	VIFSKQQR	NetMHCpan	188.2	12750.8	67.751	114	0.263	363.498	6741.575	18.546	9458.39	228.41	12750.8	188.2	2790.872523	500.8872766	4024.76011	498.5859086	M4	-0.357142857	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.272	114	37	0	0	15qA1	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr15	8202293	8202293	CA	C	ENSMUST00000110617.1	5	ENSMUSG00000039801	FS	T/X	1074	Cplane1	ENSMUST00000110617.1:c.3230del	ENSMUSP00000106247.1:p.Asn1077MetfsTer30	H-2-Kb	8	20	0	ISNLQIPL	NA	SMM	97.89	NA	NA	24	0.292	211.774	NA	NA	NA	289.66	NA	467	NA	97.89037676	NA	133.88749	M4	0.385714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2917	24	14	1	0.071428571	15qA1	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr15	76185668	76185668	G	A	ENSMUST00000073418.12	5	ENSMUSG00000022565	missense	R/W	1153	Plec	ENSMUST00000073418.12:c.3457C>T	ENSMUSP00000073124.6:p.Arg1153Trp	H-2-Kb	8	7	5	VHRLWLPL	VHRLRLPL	SMM	145.794	747.722	5.129	28	0.25	184.366	805.542	4.369	756.53	292.75	951.2	214.3	747.7217263	145.794117	854.5549615	154.4329616	M4	0.171428571	0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe	3	0.266	28	133	41	0.308270677	15qD3	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr14	88468805	88468805	AT	A	ENSMUST00000061628.6	1	ENSMUSG00000050505	FS	N/X	353	Pcdh20	ENSMUST00000061628.6:c.1058del	ENSMUSP00000054774.5:p.Asn353MetfsTer48	H-2-Kb	8	46	0	AGVSYRHI	NA	NetMHC	332.58	NA	NA	122	0.246	442.747	NA	NA	NA	332.58	NA	361	NA	709.1530907	NA	524.4933667	M4	-0.214285714	-0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.263	122	0	0	NA	14qE1	chr14-53294676-123299668	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr15	16823315	16823315	CA	C	ENSMUST00000228307.1	NA	ENSMUSG00000025370	FS	K/X	128	Cdh9	ENSMUST00000228307.1:c.383del	ENSMUSP00000154022.1:p.Lys128ArgfsTer3	H-2-Kb	9	4	8	SLYILRARL	SLYILRAKA	NetMHC	34.72	2987.65	86.05	132	0.167	138.433	2844.375	20.547	2987.65	34.72	2701.1	48.7	4386.417848	267.9847002	2662.257137	228.165512	M4	0.514285714	1.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.163	132	0	0	NA	15qA2	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	0.721014154	sgMsh2	cell line
chr14	88468805	88468805	AT	A	ENSMUST00000061628.6	1	ENSMUSG00000050505	FS	N/X	353	Pcdh20	ENSMUST00000061628.6:c.1058del	ENSMUSP00000054774.5:p.Asn353MetfsTer48	H-2-Kb	9	27	0	RIYSTWMKL	NA	NetMHC	58.49	NA	NA	122	0.246	144.513	NA	NA	NA	58.49	NA	84.8	NA	204.225515	NA	283.3022345	M4	-0.271428571	-0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.263	122	0	0	NA	14qE1	chr14-53294676-123299668	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr15	3325898	3325898	C	A	ENSMUST00000069451.10	1	ENSMUSG00000055737	missense	R/M	301	Ghr	ENSMUST00000069451.10:c.902G>T	ENSMUSP00000069457.4:p.Arg301Met	H-2-Kb	9	4	8	VIFSKQQMI	VIFSKQQRI	NetMHC	128.02	112.77	0.881	114	0.263	167.824	129.667	0.773	112.77	128.02	141	229.5	118.334124	147.6080354	149.021867	188.039895	M4	-0.357142857	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.272	114	37	0	0	15qA1	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr14	57480701	57480701	T	C	ENSMUST00000122063.7	1	ENSMUSG00000040040	missense	M/T	577	Ift88	ENSMUST00000122063.7:c.1730T>C	ENSMUSP00000113768.1:p.Met577Thr	H-2-Kb	9	5	7	QAIEWLTQL	QAIEWLMQL	NetMHC	144.21	130.29	0.903	119	0.269	232.952	219.487	0.942	130.29	144.21	188.3	221.5	250.6744092	244.4049514	289.2344371	260.7654204	M4	0.5	0.5	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.269	119	20	3	0.15	14qC3	chr14-53294676-123299668	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr14	56761852	56761852	A	C	ENSMUST00000022507.12	1	ENSMUSG00000021938	missense	L/V	316	Pspc1	ENSMUST00000022507.12:c.946T>G	ENSMUSP00000022507.5:p.Leu316Val	H-2-Kb	9	11	1	VMLMRQDLM	LMLMRQDLM	SMM	117.249	337.373	2.877	125	0.224	170.678	505.031	2.959	672.69	215.68	1505.6	463.1	337.3727491	117.2492302	325.2744865	125.6753201	M4	-0.014285714	0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	125	72	0	0	14qC3	chr14-53294676-123299668	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr14	123515710	123515710	C	A	ENSMUST00000000201.6	5	ENSMUSG00000000197	missense	R/I	288	Nalcn	ENSMUST00000000201.6:c.863G>T	ENSMUSP00000000201.5:p.Arg288Ile	H-2-Kb	9	5	7	WVFLMYIAI	WVFLMYRAI	SMM	126.506	178.694	1.413	84	0.31	190.437	187.572	0.985	117.77	251.38	308	1796.8	178.6940122	126.5056726	196.4490803	129.4941055	M4	2.571428571	2.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.309	84	0	0	NA	14qE5	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	sgMsh2	cell line
chr15	76622252	76622252	GT	G	ENSMUST00000078803.4	1	ENSMUSG00000115987	FS	N/X	216	Vps28	ENSMUST00000078803.4:c.647del	ENSMUSP00000077856.3:p.Asn216ThrfsTer?	H-2-Kb	9	5	7	SAYNAFTAS	SAYNAFNRF	SMM	204.226	61.96	0.303	164	0.22	329.815	52.55	0.159	43.14	281.84	34.5	452.4	61.95979897	204.225515	87.54876014	377.7896015	M4	0.014285714	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.227	164	132	9	0.068181818	15qD3	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr15	76185668	76185668	G	A	ENSMUST00000073418.12	5	ENSMUSG00000022565	missense	R/W	1153	Plec	ENSMUST00000073418.12:c.3457C>T	ENSMUSP00000073124.6:p.Arg1153Trp	H-2-Kb	9	6	6	TVHRLWLPL	TVHRLRLPL	NetMHCpan	140.4	473.4	3.372	28	0.25	302.662	666.334	2.202	585.79	318.08	473.4	140.4	790.8789199	332.7438214	746.8785726	287.2433612	M4	0.171428571	0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe	3	0.266	28	133	41	0.308270677	15qD3	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr14	65931023	65931023	G	A	ENSMUST00000042046.4	1	ENSMUSG00000034463	missense	R/W	382	Scara3	ENSMUST00000042046.4:c.1144C>T	ENSMUSP00000046525.3:p.Arg382Trp	H-2-Kb	9	10	2	VWLSCTLGF	VRLSCTLGF	SMM	245.533	1489.738	6.067	145	0.248	454.583	2933.457	6.453	3702.95	413.43	8110.6	3413.2	1489.738357	245.5330734	2163.963843	495.735477	M4	1.571428571	1.7	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.247	145	72	24	0.333333333	14qD1	chr14-53294676-123299668	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr14	88468805	88468805	AT	A	ENSMUST00000061628.6	1	ENSMUSG00000050505	FS	N/X	353	Pcdh20	ENSMUST00000061628.6:c.1058del	ENSMUSP00000054774.5:p.Asn353MetfsTer48	H-2-Kb	9	48	0	VSYRHISSP	NA	SMM	93.78	NA	NA	122	0.246	452.652	NA	NA	NA	1165.29	NA	748.9	NA	93.77995068	NA	156.4047722	M4	-1.1	-0.271428571	FALSE	FALSE	TRUE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.263	122	0	0	NA	14qE1	chr14-53294676-123299668	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr16	16673096	16673096	T	C	ENSMUST00000206365.2	3	ENSMUSG00000048101	missense	K/R	295	Olfr19	ENSMUST00000206365.2:c.884A>G	ENSMUSP00000145655.2:p.Lys295Arg	H-2-Db	9	6	6	YSLRNRDLM	YSLRNKDLM	NetMHC	3.3	4.46	1.352	115	0.226	5.853	8.806	1.505	4.46	3.3	5.9	4.6	11.71170164	7.105914866	14.27479894	9.496640546	M4	-0.928571429	-0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.213	115	0	0	NA	16qA3	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	0.94218414	sgMsh2	cell line
chr16	59543197	59543197	AT	A	ENSMUST00000172910.2	5	ENSMUSG00000022723	FS	K/X	2441	Crybg3	ENSMUST00000172910.2:c.7323del	ENSMUSP00000156047.1:p.Lys2441AsnfsTer11	H-2-Db	9	7	5	AAEMNHCIL	NA	NetMHCpan	226	NA	NA	45	0.2	388.867	NA	NA	NA	644.6	NA	226	NA	423.2724481	NA	354.4622582	M4	0.357142857	0.357142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.232	45	3	0	0	16qC1.3	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr16	3592590	3592590	A	G	ENSMUST00000216259.1	5	ENSMUSG00000051003	missense	S/G	65	Olfr161	ENSMUST00000216259.1:c.193A>G	ENSMUSP00000150825.1:p.Ser65Gly	H-2-Db	9	8	4	FFLGNLSFV	FFLSNLSFV	SMM	191.699	80.282	0.419	145	0.331	456.264	114.023	0.25	99.94	647.94	502	1445.2	80.28233585	191.6990674	128.1061561	264.5879126	M4	1.414285714	1.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.34	145	0	0	NA	16qA1	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	sgMsh2	cell line
chr16	10573360	10573360	A	G	ENSMUST00000066345.14	5	ENSMUSG00000068663	missense	N/S	222	Clec16a	ENSMUST00000066345.14:c.665A>G	ENSMUSP00000065423.7:p.Asn222Ser	H-2-Kb	8	5	7	AVPYFSSL	AVPYFSNL	NetMHC	12.73	5.65	0.444	151	0.291	68.323	30.127	0.441	5.65	12.73	13.4	21.9	46.85328006	115.0111643	50.2041941	114.746646	M4	0.9	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.292	151	33	11	0.333333333	16qA1	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr17	20776752	20776752	A	G	ENSMUST00000233186.1	NA	ENSMUSG00000060245	missense	M/T	168	Vmn1r228	ENSMUST00000233186.1:c.503T>C	ENSMUSP00000156690.1:p.Met168Thr	H-2-Kb	8	10	2	VTFILLNM	VMFILLNM	NetMHCpan	26.7	26.9	1.007	199	0.231	36.758	57.254	1.558	35.67	30.09	26.9	26.7	78.83879904	43.42501729	92.62751223	51.49202839	M4	1.8	2.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	199	0	0	NA	17qA3.2	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr16	85103214	85103214	C	G	ENSMUST00000005406.11	1	ENSMUSG00000022892	missense	R/P	116	App	ENSMUST00000005406.11:c.347G>C	ENSMUSP00000005406.10:p.Arg116Pro	H-2-Kb	8	6	6	IVIPYPCL	IVIPYRCL	NetMHCpan	35.7	34	0.952	99	0.253	60.569	48.602	0.802	31.15	45.15	34	35.7	64.37837347	75.9871227	63.20333573	77.57825382	M4	1.5	1.6	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.239	99	561	142	0.25311943	16qC3.3	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr17	20776752	20776752	A	G	ENSMUST00000233186.1	NA	ENSMUSG00000060245	missense	M/T	168	Vmn1r228	ENSMUST00000233186.1:c.503T>C	ENSMUSP00000156690.1:p.Met168Thr	H-2-Kb	8	5	7	ISFYWVTF	ISFYWVMF	NetMHCpan	38.3	61.1	1.595	199	0.231	99.923	85.055	0.851	67.37	84.57	61.1	38.3	170.8991883	193.9724271	102.7401038	115.2762924	M4	0.871428571	1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	199	0	0	NA	17qA3.2	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr16	3592590	3592590	A	G	ENSMUST00000216259.1	5	ENSMUSG00000051003	missense	S/G	65	Olfr161	ENSMUST00000216259.1:c.193A>G	ENSMUSP00000150825.1:p.Ser65Gly	H-2-Kb	8	6	6	MYFFLGNL	MYFFLSNL	NetMHCpan	34	14.7	0.432	145	0.331	89.071	59.088	0.663	49.51	88.66	14.7	34	68.66572344	89.4828896	80.11982647	98.3422182	M4	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.34	145	0	0	NA	16qA1	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	sgMsh2	cell line
chr16	59433483	59433483	T	C	ENSMUST00000114341.3	1	ENSMUSG00000074991	missense	F/L	188	Gabrr3	ENSMUST00000114341.3:c.562T>C	ENSMUSP00000109980.2:p.Phe188Leu	H-2-Kb	8	4	8	CFMDFSRL	CFMDFSRF	SMM	95.662	1555.034	16.255	201	0.229	105.671	1180.519	11.172	833.65	96.86	923.1	117.7	1555.034397	95.66211974	1437.937467	114.482736	M4	0.357142857	0.357142857	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.223	201	0	0	NA	16qC1.3	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	0.986418137	sgMsh2	cell line
chr16	90767027	90767027	CA	C	ENSMUST00000140920.1	5	ENSMUSG00000039929	FS	L/X	1616	Urb1	ENSMUST00000140920.1:c.4847del	ENSMUSP00000114717.1:p.Leu1616ArgfsTer37	H-2-Kb	8	35	0	MTPAFFSI	NA	NetMHCpan	58.1	NA	NA	61	0.197	155.093	NA	NA	NA	108.47	NA	58.1	NA	201.7158386	NA	223.738128	M4	1.257142857	1.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.216	61	6	1	0.166666667	16qC3.3	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	0.955454339	sgMsh2	cell line
chr16	58926453	58926453	T	C	ENSMUST00000205986.3	2	ENSMUSG00000090951	missense	I/M	39	Olfr181	ENSMUST00000205986.3:c.117A>G	ENSMUSP00000145877.2:p.Ile39Met	H-2-Kb	8	5	7	AIYLVTMV	AIYLVTIV	NetMHC	143.87	786.44	5.466	247	0.279	259.507	804.095	3.099	786.44	143.87	1131.3	680.2	620.4974485	238.6382195	821.7505435	280.3754606	M4	2.371428571	2.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.28	247	0	0	NA	16qC1.3	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr15	100190056	100190056	T	C	ENSMUST00000100203.9	1	ENSMUSG00000023026	missense	V/A	957	Dip2b	ENSMUST00000100203.9:c.2870T>C	ENSMUSP00000097777.3:p.Val957Ala	H-2-Kb	8	7	5	ASVMAGNL	ASVMVGNL	NetMHC	249.4	155.85	0.625	137	0.241	304.177	234.725	0.772	155.85	249.4	254.3	361	261.0597994	332.4604589	215.149331	275.892567	M4	1	1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.255	137	21	7	0.333333333	15qF1	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr17	20776752	20776752	A	G	ENSMUST00000233186.1	NA	ENSMUSG00000060245	missense	M/T	168	Vmn1r228	ENSMUST00000233186.1:c.503T>C	ENSMUSP00000156690.1:p.Met168Thr	H-2-Kb	8	8	4	YWVTFILL	YWVMFILL	NetMHC	352.28	334.42	0.949	199	0.231	421.685	452.313	1.073	334.42	352.28	1590.9	802.3	518.4895408	446.4162552	386.1357391	396.9538331	M4	2.5	2.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	199	0	0	NA	17qA3.2	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr17	20776752	20776752	A	G	ENSMUST00000233186.1	NA	ENSMUSG00000060245	missense	M/T	168	Vmn1r228	ENSMUST00000233186.1:c.503T>C	ENSMUSP00000156690.1:p.Met168Thr	H-2-Kb	8	6	6	SFYWVTFI	SFYWVMFI	SMM	292.914	228.95	0.782	199	0.231	414.166	342.619	0.827	314.78	409.79	1069.4	634.6	228.9496585	292.9139126	370.458872	418.5429201	M4	1.628571429	1.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	199	0	0	NA	17qA3.2	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr16	3592523	3592523	GA	G	ENSMUST00000216259.1	5	ENSMUSG00000051003	FS	G/X	42	Olfr161	ENSMUST00000216259.1:c.128del	ENSMUSP00000150825.1:p.Asn43ThrfsTer46	H-2-Kb	8	47	0	LSLRYWPF	NA	NetMHCpan	130.4	NA	NA	120	0.35	210.41	NA	NA	NA	465.62	NA	130.4	NA	248.7367755	NA	172.0838049	M4	-0.357142857	-0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.339	120	0	0	NA	16qA1	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	sgMsh2	cell line
chr16	58915901	58915901	GA	G	ENSMUST00000171656.2	2	ENSMUSG00000090629	FS	S/X	247	Olfr180	ENSMUST00000171656.2:c.739del	ENSMUSP00000128358.1:p.Ser247LeufsTer31	H-2-Kb	8	31	0	KTYQWLYF	NA	NetMHCpan	200.7	NA	NA	203	0.192	382.912	NA	NA	NA	489.31	NA	200.7	NA	445.3895263	NA	320.4350395	M4	-0.157142857	-0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.199	203	0	0	NA	16qC1.2	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	0.880256544	sgMsh2	cell line
chr16	58915901	58915901	GA	G	ENSMUST00000171656.2	2	ENSMUSG00000090629	FS	S/X	247	Olfr180	ENSMUST00000171656.2:c.739del	ENSMUSP00000128358.1:p.Ser247LeufsTer31	H-2-Kb	8	29	0	VIKTYQWL	NA	SMM	154.433	NA	NA	203	0.192	282.366	NA	NA	NA	556.53	NA	386.6	NA	154.4329616	NA	178.1312026	M4	-0.285714286	-0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.199	203	0	0	NA	16qC1.2	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	0.880256544	sgMsh2	cell line
chr16	32961669	32961669	A	G	ENSMUST00000135193.8	5	ENSMUSG00000022801	missense	Y/C	271	Lrch3	ENSMUST00000135193.8:c.812A>G	ENSMUSP00000130708.1:p.Tyr271Cys	H-2-Kb	8	5	7	KIHIFKCL	KIHIFKYL	SMMPMBEC	256.886	92.628	0.361	178	0.174	319.381	76.184	0.239	59.74	598.73	59.4	324.9	102.9769442	313.8629122	92.62751223	256.8857419	M4	1.571428571	1.571428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.173	178	51	10	0.196078431	16qB3	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	0.765248151	sgMsh2	cell line
chr16	32671419	32671419	C	T	ENSMUST00000115124.8	1	ENSMUSG00000022791	missense	A/V	380	Tnk2	ENSMUST00000115124.8:c.1139C>T	ENSMUSP00000110777.1:p.Ala380Val	H-2-Kb	8	10	2	VVLRDFLL	VALRDFLL	SMMPMBEC	304.607	329.412	1.081	41	0.341	373.313	388.706	1.041	586.83	710.4	448	413.4	327.8989304	333.2268594	329.4124431	304.6070846	M4	1.485714286	1.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.316	41	59	8	0.13559322	16qB3	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr16	66815326	66815326	G	A	ENSMUST00000120594.7	5	ENSMUSG00000064115	missense	A/V	116	Cadm2	ENSMUST00000120594.7:c.347C>T	ENSMUSP00000113500.1:p.Ala116Val	H-2-Kb	8	8	4	TSKVYLTV	TSKAYLTV	NetMHCpan	375.6	539.3	1.436	116	0.284	489.686	543.624	1.11	1475.07	1077.08	539.3	375.6	547.948825	525.7024488	534.2444264	453.6699358	M4	0.785714286	0.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.243	116	0	0	NA	16qC1.3	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr16	10573360	10573360	A	G	ENSMUST00000066345.14	5	ENSMUSG00000068663	missense	N/S	222	Clec16a	ENSMUST00000066345.14:c.665A>G	ENSMUSP00000065423.7:p.Asn222Ser	H-2-Kb	9	4	8	TAVPYFSSL	TAVPYFSNL	NetMHCpan	9.2	5.9	0.641	151	0.291	54.856	46.624	0.85	5.62	11.48	5.9	9.2	91.43448014	106.4412583	87.34740358	98.23132453	M4	0.9	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.292	151	33	11	0.333333333	16qA1	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr17	20776752	20776752	A	G	ENSMUST00000233186.1	NA	ENSMUSG00000060245	missense	M/T	168	Vmn1r228	ENSMUST00000233186.1:c.503T>C	ENSMUSP00000156690.1:p.Met168Thr	H-2-Kb	9	10	2	VTFILLNML	VMFILLNML	NetMHC	42.94	37.22	0.867	199	0.231	66.306	34.651	0.523	37.22	42.94	76.9	61.8	26.67534224	70.81251187	32.08115533	72.81988689	M4	2.442857143	2.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	199	0	0	NA	17qA3.2	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr17	20776752	20776752	A	G	ENSMUST00000233186.1	NA	ENSMUSG00000060245	missense	M/T	168	Vmn1r228	ENSMUST00000233186.1:c.503T>C	ENSMUSP00000156690.1:p.Met168Thr	H-2-Kb	9	5	7	ISFYWVTFI	ISFYWVMFI	NetMHCpan	30.8	52.7	1.711	199	0.231	101.373	114.5	1.129	43.55	43.8	52.7	30.8	199.5767748	194.5852873	176.2990613	158.9461453	M4	1.628571429	1.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	199	0	0	NA	17qA3.2	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr17	20994614	20994614	T	C	ENSMUST00000237195.1	NA	ENSMUSG00000045575	missense	I/V	25	Vmn1r233	ENSMUST00000237195.1:c.73A>G	ENSMUSP00000158452.1:p.Ile25Val	H-2-Kb	9	3	9	VIILFQTMV	VIILFQTMI	NetMHC	46.04	63.11	1.371	151	0.258	142.11	130.172	0.916	63.11	46.04	89.3	129.3	171.044849	154.920896	194.6480243	188.4733717	M4	1.857142857	2.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.26	151	0	0	NA	17qA3.2	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr16	3592590	3592590	A	G	ENSMUST00000216259.1	5	ENSMUSG00000051003	missense	S/G	65	Olfr161	ENSMUST00000216259.1:c.193A>G	ENSMUSP00000150825.1:p.Ser65Gly	H-2-Kb	9	5	7	PMYFFLGNL	PMYFFLSNL	SMM	22.862	15.35	0.671	145	0.331	43.133	26.875	0.623	34.5	54.11	28.5	71.6	15.35005727	22.86177783	25.24933823	32.15511003	M4	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.34	145	0	0	NA	16qA1	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	sgMsh2	cell line
chr17	13225949	13225949	T	C	ENSMUST00000080647.4	1	ENSMUSG00000073458	missense	C/R	138	Smok2a	ENSMUST00000080647.4:c.412T>C	ENSMUSP00000094432.2:p.Cys138Arg	H-2-Kb	9	8	4	INYRHNQGI	INYCHNQGI	NetMHCpan	30	54.9	1.83	770	0.105	105.887	125.761	1.188	188.04	80.78	54.9	30	133.6934098	144.9138851	117.8284053	130.9935766	M4	-1.7	-1.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.11	770	0	0	NA	17qA1	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	0.486573969	sgMsh2	cell line
chr16	10573360	10573360	A	G	ENSMUST00000066345.14	5	ENSMUSG00000068663	missense	N/S	222	Clec16a	ENSMUST00000066345.14:c.665A>G	ENSMUSP00000065423.7:p.Asn222Ser	H-2-Kb	9	5	7	AVPYFSSLV	AVPYFSNLV	NetMHC	102.64	185.5	1.807	151	0.291	388.265	612.133	1.577	185.5	102.64	804.4	410	419.8653158	366.5303993	824.6126636	684.3054518	M4	0.9	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.292	151	33	11	0.333333333	16qA1	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr15	98126427	98126427	G	T	ENSMUST00000051226.7	1	ENSMUSG00000033065	missense	G/C	439	Pfkm	ENSMUST00000051226.7:c.1315G>T	ENSMUSP00000059801.6:p.Gly439Cys	H-2-Kb	9	7	5	VVHDCFEGL	VVHDGFEGL	NetMHC	110.43	431.59	3.908	97	0.206	228.926	428.227	1.871	431.59	110.43	423.6	235.2	439.6529586	227.0439846	424.864065	230.8075441	M4	-0.214285714	0.5	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.209	97	126	21	0.166666667	15qF1	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	0.924490541	sgMsh2	cell line
chr16	59433483	59433483	T	C	ENSMUST00000114341.3	1	ENSMUSG00000074991	missense	F/L	188	Gabrr3	ENSMUST00000114341.3:c.562T>C	ENSMUSP00000109980.2:p.Phe188Leu	H-2-Kb	9	3	9	MCFMDFSRL	MCFMDFSRF	NetMHCpan	90	358	3.978	201	0.229	207.731	501.909	2.416	714.8	209.28	358	90	645.8177839	382.9217191	356.6563823	206.1816449	M4	0.357142857	1.085714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.223	201	0	0	NA	16qC1.3	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	0.986418137	sgMsh2	cell line
chr16	36621028	36621028	C	T	ENSMUST00000089620.10	1	ENSMUSG00000022901	missense	V/M	26	Cd86	ENSMUST00000089620.10:c.76G>A	ENSMUSP00000087047.4:p.Val26Met	H-2-Kb	9	9	3	VSMETQAYF	VSVETQAYF	NetMHCpan	215.1	615.7	2.862	64	0.297	261.835	549.441	2.098	443.33	218.1	615.7	215.1	483.1811688	305.5694975	659.5534555	431.7675507	M4	-0.357142857	-0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.302	64	1	0	0	16qB3	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr17	19053653	19053653	C	A	ENSMUST00000170424.2	5	ENSMUSG00000096717	missense	S/Y	54	Vmn2r98	ENSMUST00000170424.2:c.161C>A	ENSMUSP00000131261.1:p.Ser54Tyr	H-2-Kb	9	7	5	HTFYYLKKM	HTFYSLKKM	NetMHCpan	162.4	2676.5	16.481	119	0.168	315.655	1812.209	5.741	2171.47	303.78	2676.5	162.4	1432.550696	345.2311699	1452.947761	327.5291816	M4	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.179	119	0	0	NA	17qA3.2	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	0.79178855	sgMsh2	cell line
chr16	58915901	58915901	GA	G	ENSMUST00000171656.2	2	ENSMUSG00000090629	FS	S/X	247	Olfr180	ENSMUST00000171656.2:c.739del	ENSMUSP00000128358.1:p.Ser247LeufsTer31	H-2-Kb	9	31	0	KTYQWLYFI	NA	NetMHCpan	171.2	NA	NA	203	0.192	384.332	NA	NA	NA	307.23	NA	171.2	NA	461.4344339	NA	521.4948213	M4	0.585714286	0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.199	203	0	0	NA	16qC1.2	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	0.880256544	sgMsh2	cell line
chr16	3592523	3592523	GA	G	ENSMUST00000216259.1	5	ENSMUSG00000051003	FS	G/X	42	Olfr161	ENSMUST00000216259.1:c.128del	ENSMUSP00000150825.1:p.Asn43ThrfsTer46	H-2-Kb	9	39	0	WMYASPPPL	NA	NetMHCpan	187.9	NA	NA	120	0.35	209.738	NA	NA	NA	330.1	NA	187.9	NA	192.357888	NA	227.1171867	M4	-0.185714286	-0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.339	120	0	0	NA	16qA1	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	sgMsh2	cell line
chr17	20041610	20041610	C	A	ENSMUST00000168050.2	5	ENSMUSG00000090315	missense	Q/H	419	Vmn2r104	ENSMUST00000168050.2:c.1257G>T	ENSMUSP00000129895.1:p.Gln419His	H-2-Kb	9	7	5	QMRLHLLQM	QMRLQLLQM	SMM	159.261	464.633	2.917	157	0.229	313.845	962.138	3.066	1191.03	405.23	3505.1	1286.1	464.6329446	159.261206	733.2465023	222.4590099	M4	0.3	0.3	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.237	157	0	0	NA	17qA3.2	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr16	43898221	43898221	C	A	ENSMUST00000132859.7	5	ENSMUSG00000022701	missense	S/Y	4	Ccdc191	ENSMUST00000132859.7:c.11C>A	ENSMUSP00000116078.1:p.Ser4Tyr	H-2-Kb	9	2	3	MTYMKKELV	MTSMKKELV	NetMHC	416.43	10480.62	25.168	223	0.26	433.746	8552.231	19.717	10480.62	416.43	14641.3	616.9	6623.84254	440.6664633	5600.799166	426.8251484	M4	-0.385714286	-0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.264	223	18	1	0.055555556	16qB4	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr16	66815326	66815326	G	A	ENSMUST00000120594.7	5	ENSMUSG00000064115	missense	A/V	116	Cadm2	ENSMUST00000120594.7:c.347C>T	ENSMUSP00000113500.1:p.Ala116Val	H-2-Kb	9	8	4	TSKVYLTVL	TSKAYLTVL	NetMHCpan	234	314.2	1.343	116	0.284	318.261	475.568	1.494	710.87	472.75	314.2	234	590.3505878	373.3447082	360.7862685	263.1782532	M4	1.442857143	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.243	116	0	0	NA	16qC1.3	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr17	20776752	20776752	A	G	ENSMUST00000233186.1	NA	ENSMUSG00000060245	missense	M/T	168	Vmn1r228	ENSMUST00000233186.1:c.503T>C	ENSMUSP00000156690.1:p.Met168Thr	H-2-Kb	9	7	5	FYWVTFILL	FYWVMFILL	SMM	221.876	116.174	0.524	199	0.231	423.65	331.926	0.783	511.71	508.26	3096.3	2126.9	116.1742828	221.8758325	152.1423079	339.0392667	M4	2.5	2.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	199	0	0	NA	17qA3.2	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr16	58926453	58926453	T	C	ENSMUST00000205986.3	2	ENSMUSG00000090951	missense	I/M	39	Olfr181	ENSMUST00000205986.3:c.117A>G	ENSMUSP00000145877.2:p.Ile39Met	H-2-Kb	9	3	9	FSAIYLVTM	FSAIYLVTI	SMM	339.711	641.372	1.888	247	0.279	388.31	695.236	1.79	910.5	521.58	749.1	436.8	641.3720055	339.7113053	579.7623384	339.8208329	M4	2.028571429	2.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.28	247	0	0	NA	16qC1.3	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr16	10573360	10573360	A	G	ENSMUST00000066345.14	5	ENSMUSG00000068663	missense	N/S	222	Clec16a	ENSMUST00000066345.14:c.665A>G	ENSMUSP00000065423.7:p.Asn222Ser	H-2-Kb	9	10	2	SSLVWFIGS	SNLVWFIGS	SMM	183.7	195.483	1.064	151	0.291	453.468	657.597	1.45	919.6	551.1	1433.2	1147.6	195.4834522	183.7003569	395.5942769	355.8360953	M4	1.885714286	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.292	151	33	11	0.333333333	16qA1	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr17	20776752	20776752	A	G	ENSMUST00000233186.1	NA	ENSMUSG00000060245	missense	M/T	168	Vmn1r228	ENSMUST00000233186.1:c.503T>C	ENSMUSP00000156690.1:p.Met168Thr	H-2-Kb	10	5	7	ISFYWVTFIL	ISFYWVMFIL	NetMHCpan	91.7	145	1.581	199	0.231	444.919	421.504	0.947	138.17	143.63	145	91.7	1089.757835	1217.110475	698.0073568	746.2081705	M4	1.771428571	1.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	199	0	0	NA	17qA3.2	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr17	56632320	56632320	T	G	ENSMUST00000112979.3	1	ENSMUSG00000040828	missense	F/V	50	Catsperd	ENSMUST00000112979.3:c.148T>G	ENSMUSP00000108603.2:p.Phe50Val	H-2-Db	9	5	7	YAFPNTVVL	YAFPNTFVL	NetMHCpan	9.1	7.6	0.835	113	0.195	33.615	30.922	0.92	12.57	10.27	7.6	9.1	49.27424743	62.03260224	49.83907806	56.96000254	M4	1.314285714	1.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.208	113	1	1	1	17qD	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	0.920067141	sgMsh2	cell line
chr17	84697532	84697532	T	C	ENSMUST00000045714.14	1	ENSMUSG00000024254	missense	F/L	576	Abcg8	ENSMUST00000045714.14:c.1726T>C	ENSMUSP00000035246.8:p.Phe576Leu	H-2-Db	9	10	2	GLMINLDNL	GFMINLDNL	NetMHCpan	367.1	1384.4	3.771	81	0.21	482.343	875.659	1.815	1955.18	698.93	1384.4	367.1	313.0545354	536.5621085	366.91883	428.1244195	M4	0.5	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.202	81	0	0	NA	17qE4	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	0.893526743	sgMsh2	cell line
chr17	84697532	84697532	T	C	ENSMUST00000045714.14	1	ENSMUSG00000024254	missense	F/L	576	Abcg8	ENSMUST00000045714.14:c.1726T>C	ENSMUSP00000035246.8:p.Phe576Leu	H-2-Kb	8	4	8	SFYLTAGL	SFYLTAGF	NetMHC	15.37	172.25	11.207	81	0.21	31.057	352.868	11.362	172.25	15.37	298.6	61	482.7696948	29.69887511	407.1364636	32.41455024	M4	1.4	1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.202	81	0	0	NA	17qE4	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	0.893526743	sgMsh2	cell line
chr17	37701005	37701005	AT	A	ENSMUST00000213732.1	5	ENSMUSG00000059964	FS	F/X	112	Olfr119	ENSMUST00000213732.1:c.339del	ENSMUSP00000150099.1:p.Phe113LeufsTer3	H-2-Kb	8	5	8	QMFFFTFL	QMFFFTFF	NetMHCpan	9.9	98.7	9.97	405	0.222	18.421	250.269	13.586	184.5	17.4	98.7	9.9	316.0385059	19.44195797	349.7357273	27.84453695	M4	2.314285714	2.314285714	TRUE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2222	405	0	0	NA	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	0.982879418	sgMsh2	cell line
chr17	46323357	46323357	T	C	ENSMUST00000047970.13	1	ENSMUSG00000032842	missense	T/A	536	Abcc10	ENSMUST00000047970.13:c.1606A>G	ENSMUSP00000038041.7:p.Thr536Ala	H-2-Kb	8	10	2	AAKVFTAL	ATKVFTAL	NetMHCpan	105	90.2	0.859	55	0.345	135.621	106.479	0.785	110.69	109.53	90.2	105	117.6901185	181.861178	102.2680559	161.7111628	M4	1.4	1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.33	55	10	2	0.2	17qC	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr17	56777470	56777470	T	C	ENSMUST00000002444.14	1	ENSMUSG00000024206	missense	N/S	668	Rfx2	ENSMUST00000002444.14:c.2003A>G	ENSMUSP00000002444.7:p.Asn668Ser	H-2-Kb	8	6	6	VMGEFSDL	VMGEFNDL	NetMHC	113.49	324.64	2.861	75	0.24	192.202	326.647	1.699	324.64	113.49	576.2	261.7	313.8629122	193.9724271	328.6548155	190.4320313	M4	0.042857143	0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.276	75	3	2	0.666666667	17qD	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr17	42592968	42592968	TA	T	ENSMUST00000068355.7	1	ENSMUSG00000043972	FS	Y/X	159	Opn5	ENSMUST00000068355.7:c.475del	ENSMUSP00000063542.6:p.Tyr159MetfsTer43	H-2-Kb	8	5	7	LAVIWAML	LAVIWAYA	NetMHCpan	147.2	3567.3	24.234	38	0.263	206.513	4062.47	19.672	6717.72	182.49	3567.3	147.2	4557.639811	321.1737185	2604.593785	230.5366617	M4	2.442857143	2.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.275	38	0	0	NA	17qB3	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr17	40228805	40228805	A	G	ENSMUST00000026499.5	1	ENSMUSG00000025433	missense	V/A	167	Crisp3	ENSMUST00000026499.5:c.500T>C	ENSMUSP00000026499.5:p.Val167Ala	H-2-Kb	8	10	2	YACRYCPV	YVCRYCPV	SMMPMBEC	174.478	161.339	0.925	364	0.195	239.579	312.449	1.304	429.13	286.52	494.4	303	195.7672319	192.6371303	161.3392375	174.4777291	M4	0.514285714	0.514285714	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.197	364	1	0	0	17qB2	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	0.871409745	sgMsh2	cell line
chr17	83477824	83477824	T	C	ENSMUST00000096766.11	1	ENSMUSG00000032624	missense	L/P	875	Eml4	ENSMUST00000096766.11:c.2624T>C	ENSMUSP00000094528.4:p.Leu875Pro	H-2-Kb	8	5	7	SIIQWKPV	SIIQWKLV	SMMPMBEC	267.141	735.766	2.754	138	0.217	337.819	1037.14	3.07	1227.56	355.94	1662.3	657.1	846.7203545	319.6980594	735.7664827	267.1406633	M4	0.471428571	0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	138	70	8	0.114285714	17qE4	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	0.999688336	sgMsh2	cell line
chr17	38304994	38304994	T	C	ENSMUST00000213505.1	5	ENSMUSG00000054940	missense	T/A	156	Olfr137	ENSMUST00000213505.1:c.466A>G	ENSMUSP00000150173.1:p.Thr156Ala	H-2-Kb	8	7	5	CGFTASAL	CGFTTSAL	SMM	193.972	284.931	1.469	103	0.233	240.585	312.177	1.298	583.32	395.88	277.8	199.5	284.9311953	193.9724271	339.4220093	281.6696149	M4	1.185714286	1.185714286	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.235	103	0	0	NA	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr17	37751964	37751964	A	G	ENSMUST00000174675.3	5	ENSMUSG00000060017	missense	I/V	37	Olfr121	ENSMUST00000174675.3:c.109A>G	ENSMUSP00000133865.3:p.Ile37Val	H-2-Kb	8	4	8	CFLLFTLV	CFLLFTLI	SMM	253.945	461.041	1.816	422	0.218	479.578	724.227	1.51	850.4	581.81	2002	2533.9	461.0414792	253.9451951	598.0534499	377.3462166	M4	2.928571429	2.928571429	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.222	422	0	0	NA	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	0.981994738	sgMsh2	cell line
chr17	50736151	50736151	GC	G	ENSMUST00000024717.9	1	ENSMUSG00000023923	FS	A/X	748	Tbc1d5	ENSMUST00000024717.9:c.2242del	ENSMUSP00000024717.8:p.Ala748ProfsTer33	H-2-Kb	8	19	0	FSPSEAHL	NA	SMMPMBEC	282.319	NA	NA	45	0.2	480.503	NA	NA	NA	596.47	NA	1612.2	NA	364.5356443	NA	282.3189304	M4	-0.614285714	-0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.214	45	20	7	0.35	17qC	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	0.94660754	sgMsh2	cell line
chr17	30761096	30761096	GT	G	ENSMUST00000236140.1	NA	ENSMUSG00000033826	FS	F/X	3035	Dnah8	ENSMUST00000236140.1:c.9108del	ENSMUSP00000157469.1:p.Phe3036LeufsTer5	H-2-Kb	8	5	8	TSLDLVFL	TSLDLVFF	SMM	245.89	3997.054	16.255	134	0.179	452.067	3837.777	8.489	5159.69	706.65	3678.5	633.9	3997.053856	245.8895091	3394.220093	270.2340064	M4	2.014285714	2.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.191	134	0	0	NA	17qA3.3	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	0.844869346	sgMsh2	cell line
chr17	37701005	37701005	AT	A	ENSMUST00000213732.1	5	ENSMUSG00000059964	FS	F/X	112	Olfr119	ENSMUST00000213732.1:c.339del	ENSMUSP00000150099.1:p.Phe113LeufsTer3	H-2-Kb	9	4	9	TQMFFFTFL	TQMFFFTFF	NetMHCpan	14.3	117.3	8.203	405	0.222	93.963	252.605	2.688	250.38	40.61	117.3	14.3	271.7127388	161.1053638	254.8296748	147.3160278	M4	2.314285714	2.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2222	405	0	0	NA	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	0.982879418	sgMsh2	cell line
chr17	84697532	84697532	T	C	ENSMUST00000045714.14	1	ENSMUSG00000024254	missense	F/L	576	Abcg8	ENSMUST00000045714.14:c.1726T>C	ENSMUSP00000035246.8:p.Phe576Leu	H-2-Kb	9	3	9	NSFYLTAGL	NSFYLTAGF	NetMHC	85.47	432.59	5.061	81	0.21	225.767	521.843	2.311	432.59	85.47	325	89.2	611.0967866	362.3347605	709.9863514	410.4403034	M4	1.4	1.4	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.202	81	0	0	NA	17qE4	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	0.893526743	sgMsh2	cell line
chr17	37623831	37623831	G	A	ENSMUST00000216128.1	5	ENSMUSG00000061336	missense	T/I	268	Olfr116	ENSMUST00000216128.1:c.803C>T	ENSMUSP00000150977.1:p.Thr268Ile	H-2-Kb	9	11	1	IALEFLFSI	TALEFLFSI	NetMHCpan	56	110.4	1.971	282	0.291	141.133	246.714	1.748	180.02	99.41	110.4	56	313.4079437	182.8563304	348.5378918	210.4989821	M4	1.914285714	2.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.293	282	0	0	NA	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr17	37751964	37751964	A	G	ENSMUST00000174675.3	5	ENSMUSG00000060017	missense	I/V	37	Olfr121	ENSMUST00000174675.3:c.109A>G	ENSMUSP00000133865.3:p.Ile37Val	H-2-Kb	9	11	1	VLLMFLVSL	ILLMFLVSL	NetMHC	127.87	166.59	1.303	422	0.218	185.568	235.147	1.267	166.59	127.87	243.7	206.3	294.5167504	200.0368468	226.5948317	171.0999962	M4	2.785714286	3.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.222	422	0	0	NA	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	0.981994738	sgMsh2	cell line
chr17	32774731	32774731	T	C	ENSMUST00000159086.9	1	ENSMUSG00000024298	missense	K/R	490	Zfp871	ENSMUST00000159086.9:c.1469A>G	ENSMUSP00000127178.1:p.Lys490Arg	H-2-Kb	9	7	5	SQFQRHKAL	SQFQKHKAL	NetMHC	137.22	270.99	1.975	90	0.178	206.635	341.188	1.651	270.99	137.22	269.6	151.3	460.3731641	307.6876041	411.386466	261.9690589	M4	-0.957142857	-0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.159	90	43	7	0.162790698	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	0.703320555	sgMsh2	cell line
chr17	37701005	37701005	AT	A	ENSMUST00000213732.1	5	ENSMUSG00000059964	FS	F/X	112	Olfr119	ENSMUST00000213732.1:c.339del	ENSMUSP00000150099.1:p.Phe113LeufsTer3	H-2-Kb	9	5	8	QMFFFTFLV	QMFFFTFFG	SMM	56.378	416.016	7.379	405	0.222	130.663	1702.349	13.029	3181.25	152.62	2823.6	205	416.0159675	56.37804345	581.0988286	108.7051201	M4	2.642857143	2.642857143	TRUE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2222	405	0	0	NA	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	0.982879418	sgMsh2	cell line
chr17	84697532	84697532	T	C	ENSMUST00000045714.14	1	ENSMUSG00000024254	missense	F/L	576	Abcg8	ENSMUST00000045714.14:c.1726T>C	ENSMUSP00000035246.8:p.Phe576Leu	H-2-Kb	9	4	8	SFYLTAGLM	SFYLTAGFM	NetMHC	185.37	344.02	1.856	81	0.21	368.163	542.485	1.473	344.02	185.37	582.5	462.1	502.4698412	274.2268658	867.4610828	521.4948213	M4	1.271428571	1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.202	81	0	0	NA	17qE4	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	0.893526743	sgMsh2	cell line
chr17	56632320	56632320	T	G	ENSMUST00000112979.3	1	ENSMUSG00000040828	missense	F/V	50	Catsperd	ENSMUST00000112979.3:c.148T>G	ENSMUSP00000108603.2:p.Phe50Val	H-2-Kb	9	3	9	LFYAFPNTV	LFYAFPNTF	NetMHCpan	233	338.6	1.453	113	0.195	281.738	333.442	1.184	338.69	258.61	338.6	233	228.6177783	304.8667072	328.2842143	424.864065	M4	0.242857143	0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.208	113	1	1	1	17qD	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	0.920067141	sgMsh2	cell line
chr18	37680939	37680939	G	T	ENSMUST00000192931.1	1	ENSMUSG00000103037	missense	S/I	161	Pcdhgb1	ENSMUST00000192931.1:c.482G>T	ENSMUSP00000141348.1:p.Ser161Ile	H-2-Db	9	3	9	NSLKMYTVI	NSLKMYTVS	NetMHC	158.89	19903.22	125.264	242	0.517	356.594	9153.28	25.669	19903.22	158.89	14990.9	524.3	2996.539453	391.3992598	3315.660076	321.7881152	M4	1.214285714	1.214285714	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.511	242	3	0	0	18qB3	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	2	1	sgMsh2	cell line
chr18	37021442	37021442	T	C	ENSMUST00000047614.3	1	ENSMUSG00000103310	missense	Y/H	405	Pcdha12	ENSMUST00000047614.3:c.1213T>C	ENSMUSP00000047609.1:p.Tyr405His	H-2-Db	9	5	7	STFKNYHSL	STFKNYYSL	NetMHCpan	36.5	34.8	0.953	159	0.214	221.131	155.833	0.705	81.22	180.1	34.8	36.5	270.7821299	272.659102	230.4464382	262.162156	M4	-0.871428571	-0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.229	159	0	0	NA	18qB2	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr19	10207246	10207246	T	G	ENSMUST00000040372.13	1	ENSMUSG00000036372	missense	F/V	66	Tmem258	ENSMUST00000040372.13:c.196T>G	ENSMUSP00000044751.7:p.Phe66Val	H-2-Kb	8	11	1	VGVLFLLL	FGVLFLLL	NetMHC	19.2	194.49	10.13	226	0.177	37.169	178.287	4.797	194.49	19.2	271.5	29.8	162.0839455	44.53895263	157.666708	44.53895263	M4	3.114285714	3.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.185	226	457	83	0.181619256	19qA	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.818328948	sgMsh2	cell line
chr19	10207246	10207246	T	G	ENSMUST00000040372.13	1	ENSMUSG00000036372	missense	F/V	66	Tmem258	ENSMUST00000040372.13:c.196T>G	ENSMUSP00000044751.7:p.Phe66Val	H-2-Kb	8	4	8	VASLFMGV	VASLFMGF	NetMHC	37.83	202.78	5.36	226	0.177	128.266	476.977	3.719	202.78	37.83	174.7	78.4	810.4757034	178.1312026	751.173053	216.6406749	M4	1.9	1.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.185	226	457	83	0.181619256	19qA	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.818328948	sgMsh2	cell line
chr18	61697778	61697778	T	C	ENSMUST00000025472.6	1	ENSMUSG00000024579	missense	Y/C	341	Pcyox1l	ENSMUST00000025472.6:c.1022A>G	ENSMUSP00000025472.1:p.Tyr341Cys	H-2-Kb	8	5	7	VSLVHGCL	VSLVHGYL	NetMHC	42.26	7.17	0.17	75	0.2	48.333	15.42	0.319	7.17	42.26	15	81.6	15.83944645	48.27696948	17.44777291	48.38825938	M4	1.414285714	1.471428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	75	107	28	0.261682243	18qE1	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	1	0.884679944	sgMsh2	cell line
chr19	5098214	5098214	C	T	ENSMUST00000025805.7	1	ENSMUSG00000024873	missense	C/Y	17	Cnih2	ENSMUST00000025805.7:c.50G>A	ENSMUSP00000025805.6:p.Cys17Tyr	H-2-Kb	8	7	5	TLVLYASL	TLVLCASL	NetMHCpan	40.7	983.5	24.165	51	0.196	52.7	939.164	17.821	2097.25	47.09	983.5	40.7	894.828896	79.93555598	569.823033	58.30959165	M4	2.185714286	2.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.209	51	1	0	0	19qA	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	sgMsh2	cell line
chr18	54898451	54898451	A	G	ENSMUST00000064763.6	1	ENSMUSG00000052713	missense	S/P	806	Zfp608	ENSMUST00000064763.6:c.2416T>C	ENSMUSP00000068192.5:p.Ser806Pro	H-2-Kb	8	5	7	VNPALVPL	VNPALVSL	NetMHC	52.43	181.85	3.468	117	0.197	107.275	217.777	2.03	181.85	52.43	215.9	108.2	219.6544469	106.3506136	302.5101842	144.4574685	M4	0.985714286	1.042857143	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.204	117	32	10	0.3125	18qD3	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	1	0.902373543	sgMsh2	cell line
chr19	4262505	4262505	C	A	ENSMUST00000037992.15	1	ENSMUSG00000034616	missense	S/I	600	Ssh3	ENSMUST00000037992.15:c.1799G>T	ENSMUSP00000047718.8:p.Ser600Ile	H-2-Kb	8	7	5	VALHIAAL	VALHSAAL	NetMHCpan	46.9	112.2	2.392	43	0.279	82.566	87.242	1.057	58	53.77	112.2	46.9	77.93633877	129.3421274	96.54727043	111.3627636	M4	2.042857143	2.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.279	43	129	25	0.19379845	19qA	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	sgMsh2	cell line
chr18	75519813	75519813	T	C	ENSMUST00000165559.2	5	ENSMUSG00000052928	missense	K/E	458	Ctif	ENSMUST00000165559.2:c.1372A>G	ENSMUSP00000129974.1:p.Lys458Glu	H-2-Kb	8	5	7	FAFTAAEL	FAFTAAKL	NetMHC	81.29	76.52	0.941	45	0.133	124.469	90.585	0.728	76.52	81.29	76	111.3	104.6501849	137.6385219	105.6185011	153.0171117	M4	1.114285714	1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.151	45	3	1	0.333333333	18qE3	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	1	0.667933358	sgMsh2	cell line
chr19	4619134	4619134	T	C	ENSMUST00000068004.12	1	ENSMUSG00000024892	missense	L/P	721	Pcx	ENSMUST00000068004.12:c.2162T>C	ENSMUSP00000063825.6:p.Leu721Pro	H-2-Kb	8	10	2	SPEYYMGL	SLEYYMGL	NetMHC	107.83	51.16	0.474	137	0.131	330.222	213.216	0.646	51.16	107.83	77.5	239	472.8680813	457.867692	348.9313575	421.444121	M4	-0.342857143	-0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.128	137	52	12	0.230769231	19qA	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	sgMsh2	cell line
chr18	56491908	56491908	A	C	ENSMUST00000237355.1	NA	ENSMUSG00000001700	missense	I/L	358	Gramd3	ENSMUST00000237355.1:c.1072A>C	ENSMUSP00000157710.1:p.Ile358Leu	H-2-Kb	8	4	8	AIIVCALL	AIIVCALI	NetMHC	138.87	1449.26	10.436	73	0.219	182.51	1386.404	7.596	1449.26	138.87	2402.7	511.3	1323.548926	204.0515979	924.1447486	160.9681675	M4	3.585714286	3.585714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.21	73	12	2	0.166666667	18qD3	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	1	0.928913941	sgMsh2	cell line
chr19	5982837	5982837	A	C	ENSMUST00000041827.7	1	ENSMUSG00000037451	missense	S/A	267	Slc22a20	ENSMUST00000041827.7:c.799T>G	ENSMUSP00000049473.7:p.Ser267Ala	H-2-Kb	8	6	6	VFFLYAWW	VFFLYSWW	SMM	21.22	47.945	2.259	52	0.115	168.912	331.805	1.964	564.13	295.97	4006.7	4116.2	47.94463315	21.21973715	99.48096742	41.85429201	M4	1.157142857	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.118	52	0	0	NA	19qA	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	sgMsh2	cell line
chr19	10054643	10054643	A	G	ENSMUST00000115995.3	1	ENSMUSG00000024664	missense	H/R	266	Fads3	ENSMUST00000115995.3:c.797A>G	ENSMUSP00000111659.2:p.His266Arg	H-2-Kb	8	11	1	RQHLYFFL	HQHLYFFL	SMMPMBEC	135.75	290.228	2.138	271	0.107	153.427	437.353	2.851	1305.83	369.59	505.1	167.3	369.6068402	139.5532644	290.2284617	135.7500506	M4	0.742857143	0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.108	271	394	53	0.134517766	19qA	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.47772717	sgMsh2	cell line
chr18	37941753	37941753	A	G	ENSMUST00000043498.8	1	ENSMUSG00000024454	missense	S/P	312	Hdac3	ENSMUST00000043498.8:c.934T>C	ENSMUSP00000037981.7:p.Ser312Pro	H-2-Kb	8	6	6	WTYETPLL	WTYETSLL	SMMPMBEC	359.534	238.638	0.664	252	0.238	430.684	272.762	0.633	289.23	493.46	348.5	494.9	256.2949211	367.908651	238.6382195	359.5340277	M4	-0.028571429	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.239	252	288	48	0.166666667	18qB3	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr19	4840880	4840880	T	C	ENSMUST00000088653.2	NA	ENSMUSG00000067872	missense	Y/H	467	Ccdc87	ENSMUST00000088653.2:c.1399T>C	ENSMUSP00000086028.2:p.Tyr467His	H-2-Kb	8	7	5	AGVLHNHL	AGVLYNHL	SMMPMBEC	451.586	104.409	0.231	221	0.249	456.771	72.005	0.158	28.03	520.49	39.6	452.5	119.0529058	461.0414792	104.4094962	451.5855118	M4	0.214285714	0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.264	221	0	0	NA	19qA	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	sgMsh2	cell line
chr18	37021442	37021442	T	C	ENSMUST00000047614.3	1	ENSMUSG00000103310	missense	Y/H	405	Pcdha12	ENSMUST00000047614.3:c.1213T>C	ENSMUSP00000047609.1:p.Tyr405His	H-2-Kb	8	8	4	KNYHSLVL	KNYYSLVL	NetMHCpan	150	57	0.38	159	0.214	428.416	356.888	0.833	345.02	673.56	57	150	368.7567681	366.2182643	518.4895408	490.6140712	M4	0.428571429	0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.229	159	0	0	NA	18qB2	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr18	37356949	37356949	T	C	ENSMUST00000051163.2	NA	ENSMUSG00000045876	missense	V/A	560	Pcdhb8	ENSMUST00000051163.2:c.1679T>C	ENSMUSP00000054371.1:p.Val560Ala	H-2-Kb	8	8	4	APFALYPL	APFVLYPL	SMM	112.393	107.83	0.959	116	0.509	384.18	349.776	0.91	637.96	873.63	586.9	635.7	107.830098	112.3931906	112.6522836	132.6600022	M4	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.491	116	0	0	NA	18qB3	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	2	1	sgMsh2	cell line
chr18	37473936	37473936	T	C	ENSMUST00000050034.2	NA	ENSMUSG00000047033	missense	F/L	74	Pcdhb15	ENSMUST00000050034.2:c.220T>C	ENSMUSP00000059598.1:p.Phe74Leu	H-2-Kb	8	10	2	RLLLLSPL	RFLLLSPL	SMMPMBEC	429.279	192.637	0.449	91	0.22	459.126	249.124	0.543	305.61	971.72	348.4	437.7	163.5836898	480.5515695	192.6371303	429.2793522	M4	2.371428571	2.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.244	91	0	0	NA	18qB3	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr18	37021442	37021442	T	C	ENSMUST00000047614.3	1	ENSMUSG00000103310	missense	Y/H	405	Pcdha12	ENSMUST00000047614.3:c.1213T>C	ENSMUSP00000047609.1:p.Tyr405His	H-2-Kb	8	6	6	TFKNYHSL	TFKNYYSL	SMM	267.756	194.42	0.726	159	0.214	366.723	239.62	0.653	359	1171.72	262.6	447.2	194.4195797	267.7564861	216.6406749	286.246378	M4	-0.871428571	-0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.229	159	0	0	NA	18qB2	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr19	4619134	4619134	T	C	ENSMUST00000068004.12	1	ENSMUSG00000024892	missense	L/P	721	Pcx	ENSMUST00000068004.12:c.2162T>C	ENSMUSP00000063825.6:p.Leu721Pro	H-2-Kb	9	9	3	YSPEYYMGL	YSLEYYMGL	NetMHC	4.63	4.34	0.937	137	0.131	50.661	29.091	0.574	4.34	4.63	7	13.6	51.1811453	87.72229799	58.3781059	110.2173589	M4	-0.342857143	-0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.128	137	52	12	0.230769231	19qA	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	sgMsh2	cell line
chr19	5098214	5098214	C	T	ENSMUST00000025805.7	1	ENSMUSG00000024873	missense	C/Y	17	Cnih2	ENSMUST00000025805.7:c.50G>A	ENSMUSP00000025805.6:p.Cys17Tyr	H-2-Kb	9	6	6	LTLVLYASL	LTLVLCASL	NetMHC	19.29	223.04	11.562	51	0.196	79.112	428.998	5.423	223.04	19.29	305.6	30.8	648.7987433	138.3916859	552.3953321	127.4236379	M4	2.185714286	2.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.209	51	1	0	0	19qA	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	sgMsh2	cell line
chr18	37021442	37021442	T	C	ENSMUST00000047614.3	1	ENSMUSG00000103310	missense	Y/H	405	Pcdha12	ENSMUST00000047614.3:c.1213T>C	ENSMUSP00000047609.1:p.Tyr405His	H-2-Kb	9	5	7	STFKNYHSL	STFKNYYSL	NetMHCpan	15.4	13.9	0.903	159	0.214	61.313	45.651	0.745	16.12	22.6	13.9	15.4	75.18132925	100.0253316	87.34740358	104.5321782	M4	-0.871428571	-0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.229	159	0	0	NA	18qB2	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr19	12675042	12675042	T	G	ENSMUST00000208494.2	3	ENSMUSG00000044441	missense	V/G	279	Olfr1442	ENSMUST00000208494.2:c.836T>G	ENSMUSP00000146803.1:p.Val279Gly	H-2-Kb	9	4	8	VSVFYTMGI	VSVFYTMVI	NetMHCpan	39.1	112.1	2.867	284	0.134	141.755	309.854	2.186	352.01	61.05	112.1	39.1	342.8546153	224.4450336	276.8534884	222.4590099	M4	1.571428571	1.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.136	284	0	0	NA	19qA	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.601582362	sgMsh2	cell line
chr19	4262505	4262505	C	A	ENSMUST00000037992.15	1	ENSMUSG00000034616	missense	S/I	600	Ssh3	ENSMUST00000037992.15:c.1799G>T	ENSMUSP00000047718.8:p.Ser600Ile	H-2-Kb	9	6	6	VVALHIAAL	VVALHSAAL	NetMHCpan	63	104.8	1.663	43	0.279	96.105	102.644	1.068	75.84	67.44	104.8	63	100.4870276	124.7699497	151.0949676	145.9654263	M4	2.042857143	2.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.279	43	129	25	0.19379845	19qA	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	sgMsh2	cell line
chr19	5985928	5985928	T	C	ENSMUST00000041827.7	1	ENSMUSG00000037451	missense	I/M	71	Slc22a20	ENSMUST00000041827.7:c.213A>G	ENSMUSP00000049473.7:p.Ile71Met	H-2-Kb	9	5	7	VWLRAAMPL	VWLRAAIPL	NetMHC	113.41	232.32	2.048	70	0.157	210.641	272.666	1.294	232.32	113.41	313	195.8	232.3325184	225.4810248	452.1161284	456.2995075	M4	1	1.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.167	70	0	0	NA	19qA	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	sgMsh2	cell line
chr18	37302556	37302556	A	G	ENSMUST00000051754.1	NA	ENSMUSG00000045498	missense	Q/R	525	Pcdhb3	ENSMUST00000051754.1:c.1574A>G	ENSMUSP00000059180.1:p.Gln525Arg	H-2-Kb	9	11	1	RAFEFHVGA	QAFEFHVGA	NetMHCpan	110.2	284.7	2.583	208	0.221	481.759	390.709	0.811	172.28	176.02	284.7	110.2	496.7181164	857.254947	579.7623384	787.4989801	M4	0.642857143	0.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.22	208	0	0	NA	18qB3	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	1	0.973147938	sgMsh2	cell line
chr19	12675042	12675042	T	G	ENSMUST00000208494.2	3	ENSMUSG00000044441	missense	V/G	279	Olfr1442	ENSMUST00000208494.2:c.836T>G	ENSMUSP00000146803.1:p.Val279Gly	H-2-Kb	9	6	6	VFYTMGIPM	VFYTMVIPM	SMM	108.67	69.841	0.643	284	0.134	154.1	90.332	0.586	101.55	185.95	132	235.4	69.84092778	108.6700833	79.11339102	122.2503187	M4	0.614285714	1.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.136	284	0	0	NA	19qA	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.601582362	sgMsh2	cell line
chr18	37680939	37680939	G	T	ENSMUST00000192931.1	1	ENSMUSG00000103037	missense	S/I	161	Pcdhgb1	ENSMUST00000192931.1:c.482G>T	ENSMUSP00000141348.1:p.Ser161Ile	H-2-Kb	9	10	2	VIPNPHFSL	VSPNPHFSL	NetMHC	211.65	119.37	0.564	242	0.517	410.119	267.215	0.652	119.37	211.65	107.8	235.3	415.0591573	584.9382211	522.696991	774.9077422	M4	-0.585714286	0.228571429	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.511	242	3	0	0	18qB3	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	2	1	sgMsh2	cell line
chr18	25340381	25340381	A	G	ENSMUST00000097643.9	5	ENSMUSG00000033632	missense	N/S	414	AW554918	ENSMUST00000097643.9:c.1241A>G	ENSMUSP00000095248.3:p.Asn414Ser	H-2-Kb	9	10	2	YSWLRTQAM	YNWLRTQAM	NetMHCpan	246.9	389.9	1.579	79	0.241	285.227	354.619	1.243	397.05	289.33	389.9	246.9	301.3769268	283.2109234	319.3375581	287.2433612	M4	-0.3	-0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.258	79	6	1	0.166666667	18qA2	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr18	44847844	44847844	A	G	ENSMUST00000037763.10	1	ENSMUSG00000034653	missense	Q/R	502	Ythdc2	ENSMUST00000037763.10:c.1505A>G	ENSMUSP00000048340.7:p.Gln502Arg	H-2-Kb	9	9	3	FARVFHLIL	FAQVFHLIL	SMM	224.962	422.776	1.879	93	0.161	340.8	495.95	1.455	462.4	364.46	529.5	447.6	422.7756832	224.9624328	563.9622051	317.1392538	M4	1.628571429	1.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.158	93	17	6	0.352941176	18qB3	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	1	0.698897156	sgMsh2	cell line
chr18	37941753	37941753	A	G	ENSMUST00000043498.8	1	ENSMUSG00000024454	missense	S/P	312	Hdac3	ENSMUST00000043498.8:c.934T>C	ENSMUSP00000037981.7:p.Ser312Pro	H-2-Kb	9	4	8	RCWTYETPL	RCWTYETSL	SMMPMBEC	408.555	698.634	1.71	252	0.238	457.95	789.442	1.724	880.25	477.4	638	438.5	1244.829868	714.6773197	698.6344547	408.5545015	M4	-0.7	-0.7	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.239	252	288	48	0.166666667	18qB3	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr18	75519813	75519813	T	C	ENSMUST00000165559.2	5	ENSMUSG00000052928	missense	K/E	458	Ctif	ENSMUST00000165559.2:c.1372A>G	ENSMUSP00000129974.1:p.Lys458Glu	H-2-Kb	9	3	9	RSFAFTAAE	RSFAFTAAK	SMM	476.552	1897.186	3.981	45	0.133	497.378	1583.55	3.184	1412.21	511.42	1327.6	1067	1897.186388	476.5516746	1754.890407	483.3369531	M4	0.971428571	1.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.151	45	3	1	0.333333333	18qE3	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	1	0.667933358	sgMsh2	cell line
chr18	44847844	44847844	A	G	ENSMUST00000037763.10	1	ENSMUSG00000034653	missense	Q/R	502	Ythdc2	ENSMUST00000037763.10:c.1505A>G	ENSMUSP00000048340.7:p.Gln502Arg	H-2-Kb	9	7	5	DAFARVFHL	DAFAQVFHL	NetMHCpan	355	1026.1	2.89	93	0.161	436.068	1456.594	3.34	1952.22	609.77	1026.1	355	1233.417199	408.4228203	1679.770694	463.713778	M4	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.158	93	17	6	0.352941176	18qB3	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	1	0.698897156	sgMsh2	cell line
chr19	5982837	5982837	A	C	ENSMUST00000041827.7	1	ENSMUSG00000037451	missense	S/A	267	Slc22a20	ENSMUST00000041827.7:c.799T>G	ENSMUSP00000049473.7:p.Ser267Ala	H-2-Kb	9	6	6	VFFLYAWWL	VFFLYSWWL	SMM	111.715	68.251	0.611	52	0.115	477.142	326.92	0.685	561.53	819.31	1138.8	1653.8	68.25115418	111.7146168	92.31026548	134.9739632	M4	1.3	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.118	52	0	0	NA	19qA	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	sgMsh2	cell line
chr19	6171394	6171394	T	C	ENSMUST00000045042.7	1	ENSMUSG00000039699	missense	L/P	78	Batf2	ENSMUST00000045042.7:c.233T>C	ENSMUSP00000045744.7:p.Leu78Pro	H-2-Kb	9	5	7	AGWGRTPHL	AGWGRTLHL	NetMHCpan	309.4	307.7	0.995	74	0.122	429.93	509.685	1.186	870.88	1085.26	307.7	309.4	579.5754752	482.0698829	439.7947088	377.7896015	M4	-1.071428571	-0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.141	74	2	0	0	19qA	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.62369936	sgMsh2	cell line
chr2	24953277	24953277	T	C	ENSMUST00000028350.8	1	ENSMUSG00000026974	missense	V/A	87	Zmynd19	ENSMUST00000028350.8:c.260T>C	ENSMUSP00000028350.3:p.Val87Ala	H-2-Db	9	10	2	VAHLNAVTV	VVHLNAVTV	NetMHC	8.32	172.04	20.678	100	0.15	28.28	261.657	9.252	172.04	8.32	293.9	20.7	229.4140437	35.86080216	327.0167515	51.23538453	M4	0.942857143	1.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.16	100	103	32	0.310679612	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	0.707743955	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Db	9	5	9	SNVVNHFFV	SNVVNHFFC	NetMHC	33.28	4264.52	128.141	266	0.169	169.809	3110.826	18.32	4264.52	33.28	4326.5	48.8	1957.131469	290.8171406	1310.901318	321.7881152	M4	1.642857143	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.171	266	0	0	NA	19qA	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.756401352	sgMsh2	cell line
chr19	18690332	18690332	GT	G	ENSMUST00000025632.10	1	ENSMUSG00000024726	FS	S/X	222	Carnmt1	ENSMUST00000025632.10:c.672del	ENSMUSP00000025632.9:p.Phe224LeufsTer59	H-2-Db	9	26	0	LKLTNINFI	NA	NetMHC	171.17	NA	NA	107	0.159	488.032	NA	NA	NA	171.17	NA	510.8	NA	507.7150065	NA	468.3494343	M4	1.128571429	1.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.17	107	2	0	0	19qB	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.751977952	sgMsh2	cell line
chr19	18690332	18690332	GT	G	ENSMUST00000025632.10	1	ENSMUSG00000024726	FS	S/X	222	Carnmt1	ENSMUST00000025632.10:c.672del	ENSMUSP00000025632.9:p.Phe224LeufsTer59	H-2-Db	9	54	0	FSLMLTPTV	NA	NetMHC	216.81	NA	NA	107	0.159	301.628	NA	NA	NA	216.81	NA	469.2	NA	270.1593483	NA	333.0964468	M4	1.528571429	1.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.17	107	2	0	0	19qB	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.751977952	sgMsh2	cell line
chr2	24687761	24687761	A	G	ENSMUST00000041342.11	1	ENSMUSG00000004113	missense	L/P	700	Cacna1b	ENSMUST00000041342.11:c.2099T>C	ENSMUSP00000037416.5:p.Leu700Pro	H-2-Db	9	4	8	TLFGNYTPL	TLFGNYTLL	NetMHCpan	113.2	549.8	4.857	76	0.289	218.505	712.435	3.26	2806.17	647.6	549.8	113.2	840.6592577	260.9876759	584.2113633	176.0232357	M4	-0.128571429	-1.27E-16	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.286	76	0	0	NA	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr2	22577871	22577871	T	C	ENSMUST00000044749.13	5	ENSMUSG00000025716	missense	V/A	1317	Myo3a	ENSMUST00000044749.13:c.3950T>C	ENSMUSP00000046329.7:p.Val1317Ala	H-2-Db	9	10	2	SAVTQNAPL	SVVTQNAPL	SMMPMBEC	357.742	2283.337	6.383	111	0.252	496.921	3714.743	7.476	9108.98	745.43	4105.8	474.3	3323.686094	519.5412082	2283.336925	357.7420571	M4	0.071428571	0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.255	111	0	0	NA	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr19	38043240	38043240	TA	T	ENSMUST00000041475.15	2	ENSMUSG00000048612	FS	F/X	28	Myof	ENSMUST00000041475.15:c.84del	ENSMUSP00000045036.8:p.Phe28LeufsTer27	H-2-Kb	8	28	0	SGMRFWNL	NA	NetMHCpan	10.9	NA	NA	194	0.149	15.742	NA	NA	NA	12.22	NA	10.9	NA	21.31768301	NA	19.26371303	M4	-0.114285714	-0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.155	194	666	0	0	19qC2	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.685626956	sgMsh2	cell line
chr19	13502426	13502426	A	G	ENSMUST00000217001.1	2	ENSMUSG00000071629	missense	I/V	28	Olfr1477	ENSMUST00000217001.1:c.82A>G	ENSMUSP00000149565.1:p.Ile28Val	H-2-Kb	8	11	1	VIFTLIYL	IIFTLIYL	SMM	15.267	16.283	1.067	516	0.126	17.014	18.256	1.073	19.54	16.62	27.2	23.8	16.2832091	15.26651821	16.97227266	17.40764414	M4	2.485714286	2.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.129	516	0	0	NA	19qA	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.570618564	sgMsh2	cell line
chr19	44973627	44973627	T	C	ENSMUST00000096053.4	1	ENSMUSG00000036097	missense	I/T	1081	Slf2	ENSMUST00000096053.4:c.3242T>C	ENSMUSP00000093758.3:p.Ile1081Thr	H-2-Kb	8	8	4	LTYTLLHL	LTYILLHL	NetMHCpan	21.4	34.2	1.598	372	0.148	46.318	52.591	1.135	36.2	30.3	34.2	21.4	74.08665723	69.6209588	68.98267002	62.33615346	M4	0.785714286	0.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.15	372	94	10	0.106382979	19qC3	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.663509958	sgMsh2	cell line
chr19	13165670	13165670	T	C	ENSMUST00000207113.2	2	ENSMUSG00000045883	missense	Y/H	219	Olfr1461	ENSMUST00000207113.2:c.655T>C	ENSMUSP00000146358.1:p.Tyr219His	H-2-Kb	8	5	7	IMIIVSHL	IMIIVSYL	NetMHC	34.05	50.12	1.472	182	0.176	97.773	104.102	1.065	50.12	34.05	65.4	46.7	142.8038776	149.534017	153.0171117	148.8469706	M4	2.128571429	2.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.178	182	0	0	NA	19qA	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.78736515	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	8	13	1	VTFPHYWL	NA	NetMHCpan	13.9	NA	NA	266	0.169	31.617	NA	NA	NA	50.29	NA	13.9	NA	24.5323979	NA	38.70258739	M4	-0.157142857	-0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.171	266	0	0	NA	19qA	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.756401352	sgMsh2	cell line
chr2	25442390	25442390	CT	C	ENSMUST00000102919.3	1	ENSMUSG00000026944	FS	P/X	1478	Abca2	ENSMUST00000102919.3:c.4434del	ENSMUSP00000099983.3:p.Glu1479ArgfsTer50	H-2-Kb	8	6	7	VALSVPRL	VALSVPEI	NetMHC	82.86	2565.7	30.964	120	0.167	115.238	2687.959	23.325	2565.7	82.86	1799.7	115.2	2810.217928	115.2762924	3233.999884	142.1477533	M4	0.957142857	1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.173	120	11	0	0	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	0.765248151	sgMsh2	cell line
chr19	18690332	18690332	GT	G	ENSMUST00000025632.10	1	ENSMUSG00000024726	FS	S/X	222	Carnmt1	ENSMUST00000025632.10:c.672del	ENSMUSP00000025632.9:p.Phe224LeufsTer59	H-2-Kb	8	10	4	WSFLCSFL	WSFFMLFS	SMMPMBEC	41.471	1240.909	29.923	107	0.159	71.114	4360.255	61.313	8069.22	90.38	7479.6	185.9	926.2751223	51.84895408	1240.909187	41.47056956	M4	2.014285714	2.014285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.17	107	2	0	0	19qB	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.751977952	sgMsh2	cell line
chr2	26951726	26951726	T	G	ENSMUST00000055406.8	1	ENSMUSG00000049897	missense	L/V	537	Stkld1	ENSMUST00000055406.8:c.1609T>G	ENSMUSP00000062967.8:p.Leu537Val	H-2-Kb	8	4	8	VNNAFRGV	VNNAFRGL	SMM	73.407	20.547	0.28	100	0.26	97.335	24.036	0.247	18.98	94.96	37.4	197.7	20.5466016	73.40742668	27.52580317	99.71029474	M4	-0.442857143	-0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.271	100	0	0	NA	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr2	27171316	27171316	A	C	ENSMUST00000000910.6	1	ENSMUSG00000000889	missense	E/A	254	Dbh	ENSMUST00000000910.6:c.761A>C	ENSMUSP00000000910.6:p.Glu254Ala	H-2-Kb	8	6	6	HIIMYAAI	HIIMYEAI	NetMHC	104.55	1826.03	17.466	76	0.105	162.959	1375.3	8.44	1826.03	104.55	1000.2	175	1654.778997	236.9954455	1095.821962	150.9176382	M4	2.528571429	2.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.11	76	0	0	NA	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	0.486573969	sgMsh2	cell line
chr19	23210495	23210495	T	C	ENSMUST00000223934.1	NA	ENSMUSG00000024943	missense	T/A	986	Smc5	ENSMUST00000223934.1:c.2956A>G	ENSMUSP00000153364.1:p.Thr986Ala	H-2-Kb	8	11	1	AMLYLMAL	TMLYLMAL	NetMHC	153.64	132.51	0.862	315	0.086	300.834	236.749	0.787	132.51	153.64	108.7	171.4	340.9887101	430.2689433	396.9538331	505.5219295	M4	2.242857143	2.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.091	315	150	0	0	19qB	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.402529374	sgMsh2	cell line
chr19	44973627	44973627	T	C	ENSMUST00000096053.4	1	ENSMUSG00000036097	missense	I/T	1081	Slf2	ENSMUST00000096053.4:c.3242T>C	ENSMUSP00000093758.3:p.Ile1081Thr	H-2-Kb	8	5	7	AYYLTYTL	AYYLTYIL	NetMHC	157.88	325.67	2.063	372	0.148	364.856	839.945	2.302	325.67	157.88	374.5	180.5	1305.389154	569.823033	1434.630303	549.2119775	M4	0.328571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.15	372	94	10	0.106382979	19qC3	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.663509958	sgMsh2	cell line
chr19	44973627	44973627	T	C	ENSMUST00000096053.4	1	ENSMUSG00000036097	missense	I/T	1081	Slf2	ENSMUST00000096053.4:c.3242T>C	ENSMUSP00000093758.3:p.Ile1081Thr	H-2-Kb	8	6	6	YYLTYTLL	YYLTYILL	NetMHCpan	165.3	361.7	2.188	372	0.148	245.167	350.171	1.428	417.91	195.39	361.7	165.3	333.2268594	301.8144301	338.6413603	294.9442949	M4	1.057142857	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.15	372	94	10	0.106382979	19qC3	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.663509958	sgMsh2	cell line
chr19	58827590	58827590	A	C	ENSMUST00000066285.5	1	ENSMUSG00000025092	missense	F/V	74	Hspa12a	ENSMUST00000066285.5:c.220T>G	ENSMUSP00000066860.4:p.Phe74Val	H-2-Kb	8	5	7	SGYAYSVT	SGYAYSFT	NetMHCpan	146.9	64.6	0.44	107	0.243	199.416	89.955	0.451	80.2	204.86	64.6	146.9	118.5059074	238.6382195	99.71029474	193.9724271	M4	0.214285714	0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.237	107	1	1	1	19qD2	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	2	1	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	8	8	6	VNHFFVTF	VNHFFCDI	NetMHCpan	52.1	72.4	1.39	266	0.169	262.687	291.68	1.11	265.13	217.24	72.4	52.1	318.2291802	353.7854762	330.1718172	308.1342684	M4	0.742857143	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.171	266	0	0	NA	19qA	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.756401352	sgMsh2	cell line
chr2	24687761	24687761	A	G	ENSMUST00000041342.11	1	ENSMUSG00000004113	missense	L/P	700	Cacna1b	ENSMUST00000041342.11:c.2099T>C	ENSMUSP00000037416.5:p.Leu700Pro	H-2-Kb	8	5	7	LFGNYTPL	LFGNYTLL	SMMPMBEC	165.097	454.716	2.754	76	0.289	222.376	562.888	2.531	663.17	251.67	614.4	324.9	511.3755976	193.0812048	454.715753	165.0973111	M4	-0.128571429	-0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.286	76	0	0	NA	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr19	18690332	18690332	GT	G	ENSMUST00000025632.10	1	ENSMUSG00000024726	FS	S/X	222	Carnmt1	ENSMUST00000025632.10:c.672del	ENSMUSP00000025632.9:p.Phe224LeufsTer59	H-2-Kb	8	49	0	RSDPFFSL	NA	SMM	150.224	NA	NA	107	0.159	215.084	NA	NA	NA	257.29	NA	357.7	NA	150.2242346	NA	172.8781076	M4	0.385714286	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.17	107	2	0	0	19qB	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.751977952	sgMsh2	cell line
chr2	25442390	25442390	CT	C	ENSMUST00000102919.3	1	ENSMUSG00000026944	FS	P/X	1478	Abca2	ENSMUST00000102919.3:c.4434del	ENSMUSP00000099983.3:p.Glu1479ArgfsTer50	H-2-Kb	8	34	0	ATLSLMPM	NA	NetMHC	298.32	NA	NA	120	0.167	414.744	NA	NA	NA	298.32	NA	328.6	NA	500.8872766	NA	533.0156983	M4	1.185714286	1.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.173	120	11	0	0	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	0.765248151	sgMsh2	cell line
chr2	4935991	4935991	A	G	ENSMUST00000027975.7	1	ENSMUSG00000026664	missense	H/R	234	Phyh	ENSMUST00000027975.7:c.701A>G	ENSMUSP00000027975.7:p.His234Arg	H-2-Kb	8	6	6	VNKMYRGI	VNKMYHGI	NetMHCpan	289.4	186.9	0.646	152	0.263	335.643	419.597	1.25	556.85	339.59	186.9	289.4	465.3074435	419.5077612	373.8866857	331.6958211	M4	-1.028571429	-1.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.256	152	47	16	0.340425532	2qA1	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr19	18690332	18690332	GT	G	ENSMUST00000025632.10	1	ENSMUSG00000024726	FS	S/X	222	Carnmt1	ENSMUST00000025632.10:c.672del	ENSMUSP00000025632.9:p.Phe224LeufsTer59	H-2-Kb	8	31	0	INFIPGSI	NA	NetMHCpan	107.1	NA	NA	107	0.159	428.515	NA	NA	NA	455	NA	107.1	NA	414.7056956	NA	442.3234863	M4	0.785714286	0.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.17	107	2	0	0	19qB	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.751977952	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	8	17	0	HYWLFLAL	NA	SMMPMBEC	198.948	NA	NA	266	0.169	324.952	NA	NA	NA	632.06	NA	372.1	NA	277.8049629	NA	198.9481935	M4	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.171	266	0	0	NA	19qA	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.756401352	sgMsh2	cell line
chr19	16383254	16383254	G	A	ENSMUST00000025541.5	1	ENSMUSG00000024639	missense	V/M	314	Gnaq	ENSMUST00000025541.5:c.940G>A	ENSMUSP00000025541.5:p.Val314Met	H-2-Kb	8	6	6	ILKMFMDL	ILKMFVDL	NetMHCpan	249.7	319.7	1.28	217	0.194	388.374	474.546	1.222	1460.9	633.96	319.7	249.7	595.3056439	459.9811133	353.7854762	316.7670499	M4	0.971428571	1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.169	217	408	59	0.144607843	19qA	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.747554552	sgMsh2	cell line
chr2	25442390	25442390	CT	C	ENSMUST00000102919.3	1	ENSMUSG00000026944	FS	P/X	1478	Abca2	ENSMUST00000102919.3:c.4434del	ENSMUSP00000099983.3:p.Glu1479ArgfsTer50	H-2-Kb	8	14	0	VTYLHWSC	NA	SMM	141.495	NA	NA	120	0.167	195.341	NA	NA	NA	675.71	NA	187.1	NA	141.4946437	NA	203.5822922	M4	-0.085714286	0.157142857	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.173	120	11	0	0	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	0.765248151	sgMsh2	cell line
chr19	23210495	23210495	T	C	ENSMUST00000223934.1	NA	ENSMUSG00000024943	missense	T/A	986	Smc5	ENSMUST00000223934.1:c.2956A>G	ENSMUSP00000153364.1:p.Thr986Ala	H-2-Kb	9	10	2	SAMLYLMAL	STMLYLMAL	NetMHC	15.11	16.56	1.096	315	0.086	50.041	67.355	1.346	16.56	15.11	19.6	16.5	115.1091906	83.58146902	137.8002483	106.721028	M4	2.242857143	2.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.091	315	150	0	0	19qB	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.402529374	sgMsh2	cell line
chr19	44973627	44973627	T	C	ENSMUST00000096053.4	1	ENSMUSG00000036097	missense	I/T	1081	Slf2	ENSMUST00000096053.4:c.3242T>C	ENSMUSP00000093758.3:p.Ile1081Thr	H-2-Kb	9	5	7	AYYLTYTLL	AYYLTYILL	NetMHC	38.65	71.83	1.858	372	0.148	52.197	70.367	1.348	71.83	38.65	163.4	63.7	44.06664633	41.69749833	68.90488306	62.69746764	M4	1.057142857	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.15	372	94	10	0.106382979	19qC3	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.663509958	sgMsh2	cell line
chr2	24687761	24687761	A	G	ENSMUST00000041342.11	1	ENSMUSG00000004113	missense	L/P	700	Cacna1b	ENSMUST00000041342.11:c.2099T>C	ENSMUSP00000037416.5:p.Leu700Pro	H-2-Kb	9	4	8	TLFGNYTPL	TLFGNYTLL	NetMHCpan	51	85.6	1.678	76	0.289	88.814	134.728	1.517	105.68	60.07	85.6	51	193.2457716	151.7434661	163.775902	117.5574075	M4	-0.128571429	-1.27E-16	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.286	76	0	0	NA	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr19	18690332	18690332	GT	G	ENSMUST00000025632.10	1	ENSMUSG00000024726	FS	S/X	222	Carnmt1	ENSMUST00000025632.10:c.672del	ENSMUSP00000025632.9:p.Phe224LeufsTer59	H-2-Kb	9	49	0	RSDPFFSLM	NA	NetMHC	108.81	NA	NA	107	0.159	198.507	NA	NA	NA	108.81	NA	116.4	NA	280.61443	NA	370.0411313	M4	0.771428571	0.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.17	107	2	0	0	19qB	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.751977952	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	9	13	1	VTFPHYWLF	NA	NetMHCpan	32	NA	NA	266	0.169	35.13	NA	NA	NA	109.74	NA	32	NA	35.08407252	NA	35.17628732	M4	0.342857143	0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.171	266	0	0	NA	19qA	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.756401352	sgMsh2	cell line
chr19	44973627	44973627	T	C	ENSMUST00000096053.4	1	ENSMUSG00000036097	missense	I/T	1081	Slf2	ENSMUST00000096053.4:c.3242T>C	ENSMUSP00000093758.3:p.Ile1081Thr	H-2-Kb	9	4	8	QAYYLTYTL	QAYYLTYIL	NetMHCpan	118.9	287.1	2.415	372	0.148	148.952	306.938	2.061	357.17	145.46	287.1	118.9	170.2589693	152.4438821	326.7758854	276.8534884	M4	0.328571429	0.328571429	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.15	372	94	10	0.106382979	19qC3	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.663509958	sgMsh2	cell line
chr19	32057813	32057813	TG	T	ENSMUST00000237104.1	NA	ENSMUSG00000024887	FS	T/X	37	Asah2	ENSMUST00000237104.1:c.111del	ENSMUSP00000157424.1:p.Ile38LeufsTer59	H-2-Kb	9	42	0	TSLHFGTSV	NA	NetMHC	172.6	NA	NA	159	0.157	380.819	NA	NA	NA	172.6	NA	179.2	NA	717.9761204	NA	582.4383998	M4	0.814285714	0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.147	159	28	0	0	19qC1	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.650239759	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	9	7	7	VVNHFFVTF	VVNHFFCDI	SMM	104.018	301.377	2.897	266	0.169	110.553	279.147	2.525	290.84	180.67	126.9	112.4	301.3769268	104.0183595	267.4545558	108.7051201	M4	0.742857143	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.171	266	0	0	NA	19qA	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.756401352	sgMsh2	cell line
chr19	38043240	38043240	TA	T	ENSMUST00000041475.15	2	ENSMUSG00000048612	FS	F/X	28	Myof	ENSMUST00000041475.15:c.84del	ENSMUSP00000045036.8:p.Phe28LeufsTer27	H-2-Kb	9	27	0	LSGMRFWNL	NA	SMMPMBEC	147.656	NA	NA	194	0.149	207.055	NA	NA	NA	194.91	NA	219.2	NA	230.202481	NA	147.6556263	M4	-0.114285714	0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.155	194	666	0	0	19qC2	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.685626956	sgMsh2	cell line
chr2	24802031	24802031	A	C	ENSMUST00000147147.7	1	ENSMUSG00000036893	missense	F/V	1149	Ehmt1	ENSMUST00000147147.7:c.3445T>G	ENSMUSP00000119057.2:p.Phe1149Val	H-2-Kb	9	11	1	VVCEYVGEL	FVCEYVGEL	NetMHCpan	199.8	1113.1	5.571	69	0.188	254.386	1132.115	4.45	1151.13	238.22	1113.1	199.8	1259.244318	425.7062242	803.9888022	270.5515336	M4	0.257142857	1.414285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.194	69	58	8	0.137931034	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	0.858139545	sgMsh2	cell line
chr19	13705333	13705333	A	G	ENSMUST00000216366.1	5	ENSMUSG00000051156	missense	T/A	169	Olfr1491	ENSMUST00000216366.1:c.505A>G	ENSMUSP00000149071.1:p.Thr169Ala	H-2-Kb	9	6	6	TALIFALPF	TALIFTLPF	NetMHC	239.87	221.04	0.921	345	0.145	260.671	213.815	0.82	221.04	239.87	225.8	251.5	206.5903351	269.8422814	205.7074402	286.5827198	M4	2.557142857	2.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.144	345	0	0	NA	19qA	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.636969559	sgMsh2	cell line
chr19	44973162	44973162	A	G	ENSMUST00000096053.4	1	ENSMUSG00000036097	missense	Q/R	1040	Slf2	ENSMUST00000096053.4:c.3119A>G	ENSMUSP00000093758.3:p.Gln1040Arg	H-2-Kb	9	4	8	VLHRYLVRM	VLHRYLVQM	NetMHCpan	58.4	86.5	1.481	217	0.134	270.502	359.855	1.33	409.79	248.42	86.5	58.4	460.3731641	353.2726369	309.920283	292.583614	M4	-0.514285714	1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.138	217	102	15	0.147058824	19qC3	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.610429161	sgMsh2	cell line
chr19	16383254	16383254	G	A	ENSMUST00000025541.5	1	ENSMUSG00000024639	missense	V/M	314	Gnaq	ENSMUST00000025541.5:c.940G>A	ENSMUSP00000025541.5:p.Val314Met	H-2-Kb	9	5	7	FILKMFMDL	FILKMFVDL	NetMHC	268.8	623.27	2.319	217	0.194	358.268	502.216	1.402	623.27	268.8	645.4	411.6	381.1623536	362.3347605	317.8703353	354.201177	M4	0.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.169	217	408	59	0.144607843	19qA	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.747554552	sgMsh2	cell line
chr19	56908916	56908916	G	T	ENSMUST00000026068.7	1	ENSMUSG00000025082	missense	S/I	551	Vwa2	ENSMUST00000026068.7:c.1652G>T	ENSMUSP00000026068.7:p.Ser551Ile	H-2-Kb	9	10	2	QIFIRKCTL	QSFIRKCTL	SMM	197.292	139.994	0.71	117	0.162	282.666	151.697	0.537	139.2	323.09	183.3	474.7	139.9941861	197.2922383	163.3992279	242.2423104	M4	0.642857143	0.742857143	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.169	117	0	0	NA	19qD2	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.747554552	sgMsh2	cell line
chr19	25162947	25162947	A	G	ENSMUST00000025831.7	1	ENSMUSG00000052085	missense	K/E	1284	Dock8	ENSMUST00000025831.7:c.3850A>G	ENSMUSP00000025831.6:p.Lys1284Glu	H-2-Kb	9	8	4	LPYEQYNML	LPYKQYNML	SMM	315.58	330.453	1.047	48	0.208	366.641	364.395	0.994	295.11	331.26	441.2	536.8	330.4532291	315.5803838	398.3364054	402.0221668	M4	-1.057142857	-1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.222	48	0	0	NA	19qB	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	2	0.981994738	sgMsh2	cell line
chr19	38043240	38043240	TA	T	ENSMUST00000041475.15	2	ENSMUSG00000048612	FS	F/X	28	Myof	ENSMUST00000041475.15:c.84del	ENSMUSP00000045036.8:p.Phe28LeufsTer27	H-2-Kb	9	22	0	IMNSTLSGM	NA	SMM	268.602	NA	NA	194	0.149	486.171	NA	NA	NA	432.52	NA	1028.4	NA	268.6024688	NA	539.8212792	M4	-0.071428571	0.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.155	194	666	0	0	19qC2	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.685626956	sgMsh2	cell line
chr19	44973627	44973627	T	C	ENSMUST00000096053.4	1	ENSMUSG00000036097	missense	I/T	1081	Slf2	ENSMUST00000096053.4:c.3242T>C	ENSMUSP00000093758.3:p.Ile1081Thr	H-2-Kb	9	8	4	LTYTLLHLV	LTYILLHLV	NetMHCpan	420.8	764.9	1.818	372	0.148	426.798	410.951	0.963	451.86	440.77	764.9	420.8	360.6699835	420.8332054	370.0411313	432.7628777	M4	1.485714286	1.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.15	372	94	10	0.106382979	19qC3	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.663509958	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	9	17	0	HYWLFLALV	NA	SMM	304.166	NA	NA	266	0.169	437.286	NA	NA	NA	459.38	NA	1465.1	NA	304.1655332	NA	415.1929781	M4	2.757142857	2.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.171	266	0	0	NA	19qA	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.756401352	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	9	14	0	TFPHYWLFL	NA	NetMHCpan	353	NA	NA	266	0.169	400.076	NA	NA	NA	462.8	NA	353	NA	426.6875784	NA	373.4650797	M4	0.485714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.171	266	0	0	NA	19qA	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.756401352	sgMsh2	cell line
chr2	25442390	25442390	CT	C	ENSMUST00000102919.3	1	ENSMUSG00000026944	FS	P/X	1478	Abca2	ENSMUST00000102919.3:c.4434del	ENSMUSP00000099983.3:p.Glu1479ArgfsTer50	H-2-Kb	9	33	0	VATLSLMPM	NA	SMM	361.501	NA	NA	120	0.167	477.615	NA	NA	NA	464.04	NA	632.7	NA	361.5014137	NA	491.1905468	M4	1.185714286	2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.173	120	11	0	0	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	0.765248151	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	9	16	0	PHYWLFLAL	NA	SMM	166.001	NA	NA	266	0.169	366.318	NA	NA	NA	971.99	NA	541.1	NA	166.0007308	NA	191.5358177	M4	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.171	266	0	0	NA	19qA	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.756401352	sgMsh2	cell line
chr2	36230677	36230677	T	C	ENSMUST00000062069.5	1	ENSMUSG00000047250	missense	L/P	6	Ptgs1	ENSMUST00000062069.5:c.17T>C	ENSMUSP00000059977.5:p.Leu6Pro	H-2-Db	9	4	3	RSPSLWFPL	RSLSLWFPL	NetMHC	185.7	138.17	0.744	33	0.333	273.712	117.34	0.429	138.17	185.7	203.4	251.2	91.1213195	296.2238349	96.50948542	321.0480231	M4	0.785714286	0.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.343	33	4	0	0	2qB	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	2	1	sgMsh2	cell line
chr2	88006632	88006632	T	G	ENSMUST00000099839.3	NA	ENSMUSG00000075141	missense	M/L	49	Olfr1160	ENSMUST00000099839.3:c.145A>C	ENSMUSP00000097427.3:p.Met49Leu	H-2-Db	9	3	9	FSIYSITLL	FSIYSITLM	NetMHC	196.44	127.02	0.647	451	0.226	334.623	267.366	0.799	127.02	196.44	241.9	253.7	292.8329887	415.5468552	336.9535219	439.1066356	M4	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.239	451	0	0	NA	2qD	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	2	1	sgMsh2	cell line
chr2	88006632	88006632	T	G	ENSMUST00000099839.3	NA	ENSMUSG00000075141	missense	M/L	49	Olfr1160	ENSMUST00000099839.3:c.145A>C	ENSMUSP00000097427.3:p.Met49Leu	H-2-Db	9	6	6	YSITLLGNI	YSITLMGNI	NetMHC	256.69	185.65	0.723	451	0.226	487.354	413.213	0.848	185.65	256.69	1299.1	1238	453.5445995	515.9647117	372.8807814	458.7435806	M4	1.714285714	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.239	451	0	0	NA	2qD	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	2	1	sgMsh2	cell line
chr2	31207697	31207697	A	G	ENSMUST00000056433.6	1	ENSMUSG00000000194	missense	K/R	441	Gpr107	ENSMUST00000056433.6:c.1322A>G	ENSMUSP00000056739.5:p.Lys441Arg	H-2-Db	9	4	8	KAAINLARL	KAAINLAKL	NetMHCpan	101.4	102.4	1.01	150	0.227	325.555	235.751	0.724	167.68	392.01	102.4	101.4	303.8225469	298.2771604	364.3929785	352.8336521	M4	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.223	150	112	14	0.125	2qB	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	0.986418137	sgMsh2	cell line
chr2	88006632	88006632	T	G	ENSMUST00000099839.3	NA	ENSMUSG00000075141	missense	M/L	49	Olfr1160	ENSMUST00000099839.3:c.145A>C	ENSMUSP00000097427.3:p.Met49Leu	H-2-Kb	8	4	8	SIYSITLL	SIYSITLM	NetMHC	23.89	82.42	3.45	451	0.226	68.167	260.849	3.827	82.42	23.89	64.5	24.2	480.5515695	119.8781411	439.2785529	112.1346934	M4	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.239	451	0	0	NA	2qD	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	2	1	sgMsh2	cell line
chr2	31207697	31207697	A	G	ENSMUST00000056433.6	1	ENSMUSG00000000194	missense	K/R	441	Gpr107	ENSMUST00000056433.6:c.1322A>G	ENSMUSP00000056739.5:p.Lys441Arg	H-2-Kb	8	5	7	AAINLARL	AAINLAKL	NetMHC	45.63	189.95	4.163	150	0.227	104.51	266.237	2.547	189.95	45.63	211.3	91.6	351.3500341	122.9532464	321.1737185	117.4194387	M4	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.223	150	112	14	0.125	2qB	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	0.986418137	sgMsh2	cell line
chr2	85786374	85786374	T	C	ENSMUST00000215945.1	5	ENSMUSG00000033850	missense	F/L	288	Olfr1015	ENSMUST00000215945.1:c.862T>C	ENSMUSP00000148957.1:p.Phe288Leu	H-2-Kb	8	4	8	INPLLNPL	INPLLNPF	NetMHC	54.38	1179.23	21.685	279	0.19	137.353	1709.61	12.447	1179.23	54.38	1406.7	150.9	2012.51905	123.8055176	2012.51905	160.228586	M4	0.171428571	0.271428571	FALSE	FALSE	FALSE	0	FALSE	2	Mutect2;Strelka2;MuSe;Vardict	4	0.189	279	0	0	NA	2qD	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.836022547	sgMsh2	cell line
chr2	88034957	88034957	A	G	ENSMUST00000129056.2	2	ENSMUSG00000075140	missense	Y/H	61	Olfr73	ENSMUST00000129056.2:c.181T>C	ENSMUSP00000149472.1:p.Tyr61His	H-2-Kb	8	10	2	MHFFLSHL	MYFFLSHL	NetMHCpan	37.5	18.4	0.491	280	0.104	80.314	102.23	1.273	79.22	82.87	18.4	37.5	125.2391179	77.75709016	128.7478543	88.66250554	M4	0.857142857	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.107	280	0	0	NA	2qD	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.47330377	sgMsh2	cell line
chr2	88025662	88025662	TC	T	ENSMUST00000214438.1	5	ENSMUSG00000045150	FS	L/X	313	Olfr1161	ENSMUST00000214438.1:c.943del	ENSMUSP00000150251.1:p.His315IlefsTer31	H-2-Kb	8	9	5	IALPIYPL	IALPHLSS	NetMHCpan	64.7	5527.5	85.433	72	0.097	192.009	4399.474	22.913	10853.72	131.24	5527.5	64.7	1724.80499	252.7784229	3271.447838	258.0714726	M4	1.342857143	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.103	72	0	0	NA	2qD	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.455610171	sgMsh2	cell line
chr2	31207697	31207697	A	G	ENSMUST00000056433.6	1	ENSMUSG00000000194	missense	K/R	441	Gpr107	ENSMUST00000056433.6:c.1322A>G	ENSMUSP00000056739.5:p.Lys441Arg	H-2-Kb	8	7	5	INLARLRL	INLAKLRL	NetMHCpan	74.3	156.3	2.104	150	0.227	185.389	321.112	1.732	315.08	157.11	156.3	74.3	327.1447838	213.6682534	353.7854762	227.3735801	M4	0.1	0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.223	150	112	14	0.125	2qB	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	0.986418137	sgMsh2	cell line
chr2	88025662	88025662	TC	T	ENSMUST00000214438.1	5	ENSMUSG00000045150	FS	L/X	313	Olfr1161	ENSMUST00000214438.1:c.943del	ENSMUSP00000150251.1:p.His315IlefsTer31	H-2-Kb	8	29	0	KNFNYKII	NA	NetMHCpan	96.4	NA	NA	72	0.097	348.173	NA	NA	NA	269.04	NA	96.4	NA	427.3069928	NA	475.0507412	M4	-0.057142857	-0.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.103	72	0	0	NA	2qD	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.455610171	sgMsh2	cell line
chr2	36230677	36230677	T	C	ENSMUST00000062069.5	1	ENSMUSG00000047250	missense	L/P	6	Ptgs1	ENSMUST00000062069.5:c.17T>C	ENSMUSP00000059977.5:p.Leu6Pro	H-2-Kb	8	6	1	PSLWFPLL	LSLWFPLL	SMM	236.995	34.099	0.144	33	0.333	295.234	22.649	0.077	8.94	285.86	11.2	373.9	34.09887101	236.9954455	35.87071224	304.6070846	M4	1.557142857	1.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.343	33	4	0	0	2qB	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	2	1	sgMsh2	cell line
chr2	89930111	89930111	TG	T	ENSMUST00000213720.2	5	ENSMUSG00000049149	FS	G/X	101	Olfr1258	ENSMUST00000213720.2:c.304del	ENSMUSP00000149547.1:p.Glu102SerfsTer14	H-2-Kb	8	6	7	MTQVFGSI	MTQVFGEH	NetMHCpan	159.6	20469.1	128.253	339	0.224	254.266	15395.267	60.548	26758.03	313.64	20469.1	159.6	10321.43305	258.0714726	4156.616909	250.4609364	M4	0.871428571	0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.226	339	0	0	NA	2qE1	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	2	0.999688336	sgMsh2	cell line
chr2	37405335	37405335	A	C	ENSMUST00000100143.9	5	ENSMUSG00000075376	missense	V/G	223	Rc3h2	ENSMUST00000100143.9:c.668T>G	ENSMUSP00000097721.3:p.Val223Gly	H-2-Kb	8	8	4	VLFGVQRL	VLFVVQRL	NetMHCpan	165.8	52.4	0.316	138	0.232	207.26	71.12	0.343	63.22	364.58	52.4	165.8	79.02054124	199.8664966	79.93555598	214.6545013	M4	0.885714286	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.224	138	55	15	0.272727273	2qB	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	0.990841537	sgMsh2	cell line
chr2	90296129	90296129	A	G	ENSMUST00000214356.2	3	ENSMUSG00000080809	missense	V/A	244	Olfr1273-ps	ENSMUST00000214356.2:c.731T>C	ENSMUSP00000150797.1:p.Val244Ala	H-2-Kb	8	10	2	VAILFFGP	VVILFFGP	SMM	225.289	228.95	1.016	421	0.154	379.677	484.135	1.275	739.32	511.76	1159.7	523.3	228.9496585	225.2890066	228.9496585	247.5939338	M4	1.957142857	2.785714286	FALSE	FALSE	TRUE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.159	421	0	0	NA	2qE1	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.703320555	sgMsh2	cell line
chr2	88958779	88958779	AT	A	ENSMUST00000215781.1	5	ENSMUSG00000048226	FS	H/X	104	Olfr1212	ENSMUST00000215781.1:c.314del	ENSMUSP00000149781.1:p.Phe105SerfsTer7	H-2-Kb	8	7	6	IFAEHSLL	IFAEHFFA	SMM	230.537	3256.417	14.125	344	0.102	413.615	5031.353	12.164	9427.84	554.67	5344.9	432.1	3256.4169	230.5366617	4717.805149	395.1299959	M4	0.671428571	0.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.108	344	0	0	NA	2qE1	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.47772717	sgMsh2	cell line
chr2	90296129	90296129	A	G	ENSMUST00000214356.2	3	ENSMUSG00000080809	missense	V/A	244	Olfr1273-ps	ENSMUST00000214356.2:c.731T>C	ENSMUSP00000150797.1:p.Val244Ala	H-2-Kb	8	11	1	AILFFGPA	VILFFGPA	SMMPMBEC	255.705	74.6	0.292	421	0.154	409.107	103.202	0.252	125.17	696.41	173	512.2	81.23440428	306.013087	74.60020141	255.7054591	M4	1.957142857	1.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.159	421	0	0	NA	2qE1	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.703320555	sgMsh2	cell line
chr2	40697525	40697525	T	G	ENSMUST00000052550.12	1	ENSMUSG00000049252	missense	N/T	3906	Lrp1b	ENSMUST00000052550.12:c.11717A>C	ENSMUSP00000054275.7:p.Asn3906Thr	H-2-Kb	8	6	6	FVYPFTYS	FVYPFNYS	SMM	123.521	158.03	1.279	115	0.174	301.026	455.035	1.512	1179.6	697.16	627.1	400.8	158.0301673	123.5207728	282.9697428	201.251905	M4	0.185714286	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.178	115	0	0	NA	2qB	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	0.78736515	sgMsh2	cell line
chr2	86806924	86806924	A	G	ENSMUST00000216117.1	5	ENSMUSG00000078420	missense	L/P	25	Olfr141	ENSMUST00000216117.1:c.74T>C	ENSMUSP00000150485.1:p.Leu25Pro	H-2-Kb	8	9	3	IIPFLLFL	IILFLLFL	NetMHCpan	206.4	540.7	2.62	313	0.157	258.322	328.121	1.27	559.81	707.53	540.7	206.4	93.70008827	219.6544469	115.5420317	296.9887511	M4	2.842857143	2.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.147	313	0	0	NA	2qD	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.650239759	sgMsh2	cell line
chr2	40697525	40697525	T	G	ENSMUST00000052550.12	1	ENSMUSG00000049252	missense	N/T	3906	Lrp1b	ENSMUST00000052550.12:c.11717A>C	ENSMUSP00000054275.7:p.Asn3906Thr	H-2-Kb	8	4	8	LGFVYPFT	LGFVYPFN	NetMHCpan	212.8	1968.3	9.25	115	0.174	442.233	1103.469	2.495	10018.04	1099.97	1968.3	212.8	225.2890066	554.2937734	238.6382195	330.1718172	M4	0.828571429	1.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.178	115	0	0	NA	2qB	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	0.78736515	sgMsh2	cell line
chr2	90296129	90296129	A	G	ENSMUST00000214356.2	3	ENSMUSG00000080809	missense	V/A	244	Olfr1273-ps	ENSMUST00000214356.2:c.731T>C	ENSMUSP00000150797.1:p.Val244Ala	H-2-Kb	9	10	2	VAILFFGPA	VVILFFGPA	NetMHC	27.49	37.64	1.369	421	0.154	72.942	107.929	1.48	37.64	27.49	98.3	44.2	120.2568988	106.9325688	117.5574075	101.6833861	M4	1.957142857	2.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.159	421	0	0	NA	2qE1	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.703320555	sgMsh2	cell line
chr2	88025662	88025662	TC	T	ENSMUST00000214438.1	5	ENSMUSG00000045150	FS	L/X	313	Olfr1161	ENSMUST00000214438.1:c.943del	ENSMUSP00000150251.1:p.His315IlefsTer31	H-2-Kb	9	29	0	KNFNYKIIL	NA	NetMHCpan	40.6	NA	NA	72	0.097	130.694	NA	NA	NA	76.84	NA	40.6	NA	184.5482792	NA	197.3558481	M4	0.985714286	0.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.103	72	0	0	NA	2qD	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.455610171	sgMsh2	cell line
chr2	68118819	68118819	A	G	ENSMUST00000112346.2	NA	ENSMUSG00000034780	missense	S/G	293	B3galt1	ENSMUST00000112346.2:c.877A>G	ENSMUSP00000107965.2:p.Ser293Gly	H-2-Kb	9	10	2	YGLCRYRRV	YSLCRYRRV	NetMHC	124.84	39.29	0.315	215	0.191	342.339	134.347	0.392	39.29	124.84	116.2	280.8	165.6189397	475.4556362	152.4930322	403.8778168	M4	-0.614285714	-0.614285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.197	215	0	0	NA	2qC1.3	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	0.871409745	sgMsh2	cell line
chr2	86160001	86160001	T	C	ENSMUST00000215624.1	NA	ENSMUSG00000075202	missense	Y/C	123	Olfr1042	ENSMUST00000215624.1:c.368A>G	ENSMUSP00000151053.1:p.Tyr123Cys	H-2-Kb	9	6	6	MAYDRCVAI	MAYDRYVAI	NetMHCpan	132.7	14.4	0.109	354	0.119	145.305	30.259	0.208	27.08	145.65	14.4	132.7	39.27443988	184.1238299	33.43874735	144.9606074	M4	0.528571429	0.528571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.124	354	0	0	NA	2qD	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.548501565	sgMsh2	cell line
chr2	36230677	36230677	T	C	ENSMUST00000062069.5	1	ENSMUSG00000047250	missense	L/P	6	Ptgs1	ENSMUST00000062069.5:c.17T>C	ENSMUSP00000059977.5:p.Leu6Pro	H-2-Kb	9	4	3	RSPSLWFPL	RSLSLWFPL	NetMHCpan	107	120.4	1.125	33	0.333	279.572	194.599	0.696	165.27	175.34	120.4	107	223.9288243	383.8044448	282.000579	532.4146536	M4	0.785714286	0.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.343	33	4	0	0	2qB	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	2	1	sgMsh2	cell line
chr2	89074615	89074615	T	C	ENSMUST00000215225.2	5	ENSMUSG00000075104	missense	I/V	159	Olfr1219	ENSMUST00000215225.2:c.475A>G	ENSMUSP00000149573.1:p.Ile159Val	H-2-Kb	9	11	1	VIFTLQLPF	IIFTLQLPF	NetMHCpan	123.1	134.9	1.096	504	0.103	159.509	222.786	1.397	234.59	185.57	134.9	123.1	229.67303	155.9947563	215.8986864	163.0234201	M4	1.057142857	2.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.1	504	0	0	NA	2qE1	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.442339972	sgMsh2	cell line
chr2	89074615	89074615	T	C	ENSMUST00000215225.2	5	ENSMUSG00000075104	missense	I/V	159	Olfr1219	ENSMUST00000215225.2:c.475A>G	ENSMUSP00000149573.1:p.Ile159Val	H-2-Kb	9	9	3	IQVIFTLQL	IQIIFTLQL	NetMHCpan	128.8	75.1	0.583	504	0.103	267.149	173.082	0.648	108.89	189.75	75.1	128.8	317.7678825	464.6329446	237.2739171	344.5482116	M4	2.128571429	2.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.1	504	0	0	NA	2qE1	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.442339972	sgMsh2	cell line
chr2	31207697	31207697	A	G	ENSMUST00000056433.6	1	ENSMUSG00000000194	missense	K/R	441	Gpr107	ENSMUST00000056433.6:c.1322A>G	ENSMUSP00000056739.5:p.Lys441Arg	H-2-Kb	9	7	5	INLARLRLF	INLAKLRLF	SMM	221.366	331.215	1.496	150	0.227	236.336	355.812	1.506	295.92	230.43	501.3	275	331.2150024	221.3655323	380.4083139	242.2423104	M4	1	1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.223	150	112	14	0.125	2qB	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	0.986418137	sgMsh2	cell line
chr2	86084932	86084932	T	C	ENSMUST00000216886.1	5	ENSMUSG00000075205	missense	I/V	282	Olfr1037	ENSMUST00000216886.1:c.844A>G	ENSMUSP00000150319.1:p.Ile282Val	H-2-Kb	9	9	3	IVVPMLNPM	IVIPMLNPM	SMM	258.291	176.649	0.684	443	0.077	270.745	169.239	0.625	161.83	275.19	142.2	266.3	176.6485187	258.291432	228.165512	331.3217908	M4	0.728571429	1.928571429	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.081	443	0	0	NA	2qD	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.358295377	sgMsh2	cell line
chr2	86084932	86084932	T	C	ENSMUST00000216886.1	5	ENSMUSG00000075205	missense	I/V	282	Olfr1037	ENSMUST00000216886.1:c.844A>G	ENSMUSP00000150319.1:p.Ile282Val	H-2-Kb	9	5	7	VFYTIVVPM	VFYTIVIPM	SMMPMBEC	166.821	184.183	1.104	443	0.077	232.828	238.017	1.022	291.85	278.54	357.1	279.4	183.2778578	187.1156015	184.183194	166.8207233	M4	1.6	2.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.081	443	0	0	NA	2qD	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.358295377	sgMsh2	cell line
chr2	89296788	89296788	T	C	ENSMUST00000099787.1	NA	ENSMUSG00000075094	missense	M/V	161	Olfr1230	ENSMUST00000099787.1:c.481A>G	ENSMUSP00000097375.1:p.Met161Val	H-2-Kb	9	6	6	IQLLFVYQI	IQLLFMYQI	NetMHC	282.46	184.02	0.651	218	0.124	487.913	327.156	0.671	184.02	282.46	231.4	329.8	505.9527957	753.5464011	422.9119919	646.0260045	M4	2.042857143	2.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.125	218	0	0	NA	2qE1	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.552924965	sgMsh2	cell line
chr2	88034957	88034957	A	G	ENSMUST00000129056.2	2	ENSMUSG00000075140	missense	Y/H	61	Olfr73	ENSMUST00000129056.2:c.181T>C	ENSMUSP00000149472.1:p.Tyr61His	H-2-Kb	9	9	3	PMHFFLSHL	PMYFFLSHL	SMM	78.183	13.744	0.176	280	0.104	176.825	27.523	0.156	44.85	291.62	32.8	232.8	13.74390042	78.18258038	22.24590099	120.8509309	M4	0.857142857	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.107	280	0	0	NA	2qD	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.47330377	sgMsh2	cell line
chr2	88958779	88958779	AT	A	ENSMUST00000215781.1	5	ENSMUSG00000048226	FS	H/X	104	Olfr1212	ENSMUST00000215781.1:c.314del	ENSMUSP00000149781.1:p.Phe105SerfsTer7	H-2-Kb	9	6	7	QIFAEHSLL	QIFAEHFFA	NetMHCpan	261.4	5440	20.811	344	0.102	305.306	6244.741	20.454	11614.97	331.93	5440	261.4	5598.993973	278.6826939	6890.488306	421.9393213	M4	0.671428571	0.771428571	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.108	344	0	0	NA	2qE1	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.47772717	sgMsh2	cell line
chr2	87974216	87974216	A	G	ENSMUST00000099840.1	NA	ENSMUSG00000075142	missense	Y/H	150	Olfr74	ENSMUST00000099840.1:c.448T>C	ENSMUSP00000097428.1:p.Tyr150His	H-2-Kb	9	11	1	HAWGFTCSL	YAWGFTCSL	NetMHCpan	262.3	104.5	0.398	374	0.19	397.627	202.231	0.509	135.24	373.45	104.5	262.3	269.2216614	421.8033261	307.7868068	520.2954165	M4	0.9	0.9	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.191	374	0	0	NA	2qD	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.844869346	sgMsh2	cell line
chr2	86806924	86806924	A	G	ENSMUST00000216117.1	5	ENSMUSG00000078420	missense	L/P	25	Olfr141	ENSMUST00000216117.1:c.74T>C	ENSMUSP00000150485.1:p.Leu25Pro	H-2-Kb	9	8	4	QIIPFLLFL	QIILFLLFL	NetMHCpan	220.4	1503.4	6.821	313	0.157	351.234	313.492	0.893	323.42	389.78	1503.4	220.4	185.8275068	312.6871254	303.5638135	498.023688	M4	2.842857143	2.942857143	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.147	313	0	0	NA	2qD	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.650239759	sgMsh2	cell line
chr2	88025662	88025662	TC	T	ENSMUST00000214438.1	5	ENSMUSG00000045150	FS	L/X	313	Olfr1161	ENSMUST00000214438.1:c.943del	ENSMUSP00000150251.1:p.His315IlefsTer31	H-2-Kb	9	31	0	FNYKIILTL	NA	NetMHCpan	180.6	NA	NA	72	0.097	350.618	NA	NA	NA	458.55	NA	180.6	NA	341.2793414	NA	359.9564831	M4	1.528571429	1.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.103	72	0	0	NA	2qD	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.455610171	sgMsh2	cell line
chr2	89296788	89296788	T	C	ENSMUST00000099787.1	NA	ENSMUSG00000075094	missense	M/V	161	Olfr1230	ENSMUST00000099787.1:c.481A>G	ENSMUSP00000097375.1:p.Met161Val	H-2-Kb	9	8	4	LLFVYQIPF	LLFMYQIPF	SMMPMBEC	338.259	323.035	0.955	218	0.124	415.27	383.726	0.924	434.14	479.7	354.3	492.4	413.1521337	350.8407252	323.0353127	338.259498	M4	1.128571429	2.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.125	218	0	0	NA	2qE1	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.552924965	sgMsh2	cell line
chr2	85786374	85786374	T	C	ENSMUST00000215945.1	5	ENSMUSG00000033850	missense	F/L	288	Olfr1015	ENSMUST00000215945.1:c.862T>C	ENSMUSP00000148957.1:p.Phe288Leu	H-2-Kb	9	3	9	IINPLLNPL	IINPLLNPF	NetMHCpan	438.7	1653.4	3.769	279	0.19	476.268	1172.73	2.462	1420.23	481.44	1653.4	438.7	794.5294511	471.0966327	925.2306262	534.872168	M4	0.171428571	1.142857143	FALSE	FALSE	FALSE	0	FALSE	2	Mutect2;Strelka2;MuSe;Vardict	4	0.189	279	0	0	NA	2qD	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.836022547	sgMsh2	cell line
chr2	87656102	87656102	A	AT	ENSMUST00000135875.3	5	ENSMUSG00000111747	FS	M/NX	273	Olfr1134	ENSMUST00000135875.3:c.817dup	ENSMUSP00000150837.1:p.Met273AsnfsTer23	H-2-Kb	9	20	0	DSYVKPTYL	NA	SMM	254.748	NA	NA	406	0.187	435.96	NA	NA	NA	486.22	NA	545.4	NA	254.7475407	NA	385.7003207	M4	-0.114285714	-0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.188	406	0	0	NA	2qD	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.831599147	sgMsh2	cell line
chr2	89282603	89282603	T	C	ENSMUST00000213883.1	5	ENSMUSG00000075095	missense	I/V	177	Olfr1229	ENSMUST00000213883.1:c.529A>G	ENSMUSP00000150537.1:p.Ile177Val	H-2-Kb	9	10	2	FVCDLYPLL	FICDLYPLL	SMMPMBEC	295.291	300.781	1.019	365	0.107	447.821	486.141	1.086	590.24	525.72	1151.1	998.5	382.0410236	369.9218633	300.7807237	295.2908568	M4	1.071428571	1.128571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.108	365	0	0	NA	2qE1	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.47772717	sgMsh2	cell line
chr2	158768178	158768178	C	T	ENSMUST00000029183.2	1	ENSMUSG00000027654	missense	P/L	22	Fam83d	ENSMUST00000029183.2:c.65C>T	ENSMUSP00000029183.2:p.Pro22Leu	H-2-Db	9	8	4	CGPLNPTEL	CGPPNPTEL	NetMHC	65.56	425.32	6.487	41	0.39	216.905	644.766	2.973	425.32	65.56	306.4	93.7	864.2114181	340.1104688	1154.968129	410.7428385	M4	-0.471428571	-0.214285714	TRUE	FALSE	FALSE	1	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.378	41	10	3	0.3	2qH1	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	2	1	sgMsh2	cell line
chr2	180583499	180583499	A	G	ENSMUST00000029085.8	1	ENSMUSG00000027569	missense	T/A	83	Mrgbp	ENSMUST00000029085.8:c.247A>G	ENSMUSP00000029085.8:p.Thr83Ala	H-2-Db	9	10	2	SAMYDMQAL	STMYDMQAL	NetMHCpan	338.9	3104.4	9.16	77	0.195	412.293	3121.081	7.57	4556.07	341.95	3104.4	338.9	3137.762006	482.636319	2975.568825	520.6789256	M4	0.157142857	0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	77	69	19	0.275362319	2qH4	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	0.884679944	sgMsh2	cell line
chr2	121336461	121336461	T	G	ENSMUST00000052029.9	1	ENSMUSG00000033526	missense	S/R	870	Ppip5k1	ENSMUST00000052029.9:c.2608A>C	ENSMUSP00000057632.3:p.Ser870Arg	H-2-Db	9	11	1	RAISELNYM	SAISELNYM	NetMHCpan	138.7	63.8	0.46	136	0.176	375.561	214.339	0.571	146.47	381.66	63.8	138.7	340.1104688	520.7388744	282.2084413	369.4621898	M4	0.157142857	0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.185	136	28	8	0.285714286	2qE5	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	0.818328948	sgMsh2	cell line
chr2	150763636	150763636	A	G	ENSMUST00000094467.5	1	ENSMUSG00000033068	missense	Y/C	262	Entpd6	ENSMUST00000094467.5:c.785A>G	ENSMUSP00000092038.5:p.Tyr262Cys	H-2-Kb	8	11	1	CSYSYLGL	YSYSYLGL	NetMHC	3.75	2.99	0.797	52	0.231	6.365	4.984	0.783	2.99	3.75	3.5	4.9	6.467553055	7.829607656	6.819303192	10.53755853	M4	0.428571429	0.428571429	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.277	52	53	14	0.264150943	2qG3	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr2	131274254	131274254	T	C	ENSMUST00000183349.1	3	ENSMUSG00000037514	missense	I/T	24	Pank2	ENSMUST00000183349.1:c.70T>C	ENSMUSP00000139203.1:p.Ile24Thr	H-2-Kb	8	8	4	LSRTFSHL	LSRIFSHL	NetMHC	6.68	6.6	0.988	64	0.188	22.689	20.587	0.907	6.6	6.68	16.3	22.9	26.10597994	24.5323979	24.87367755	22.47708563	M4	-0.485714286	-0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.207	64	98	13	0.132653061	2qF1	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	0.915643742	sgMsh2	cell line
chr2	180714861	180714861	A	G	ENSMUST00000078687.5	1	ENSMUSG00000027573	missense	N/S	97	Gid8	ENSMUST00000078687.5:c.290A>G	ENSMUSP00000077753.5:p.Asn97Ser	H-2-Kb	8	11	1	SRYLYFHL	NRYLYFHL	NetMHC	8.14	142.06	17.452	94	0.191	15.146	118.423	7.819	142.06	8.14	235.5	34.2	94.78508415	14.91900983	87.24489012	15.37234066	M4	0.014285714	0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	94	156	48	0.307692308	2qH4	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	0.884679944	sgMsh2	cell line
chr2	180583499	180583499	A	G	ENSMUST00000029085.8	1	ENSMUSG00000027569	missense	T/A	83	Mrgbp	ENSMUST00000029085.8:c.247A>G	ENSMUSP00000029085.8:p.Thr83Ala	H-2-Kb	8	11	1	AMYDMQAL	TMYDMQAL	NetMHCpan	73.9	56.7	0.767	77	0.195	127.758	106.842	0.836	70.22	74.49	56.7	73.9	143.4630303	181.0256018	185.6692572	236.4503711	M4	0.157142857	0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	77	69	19	0.275362319	2qH4	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	0.884679944	sgMsh2	cell line
chr2	132240580	132240580	A	G	ENSMUST00000110164.7	2	ENSMUSG00000027341	missense	F/S	90	Tmem230	ENSMUST00000110164.7:c.269T>C	ENSMUSP00000105793.1:p.Phe90Ser	H-2-Kb	8	11	1	SLPGFYHL	FLPGFYHL	NetMHCpan	98.2	522.1	5.317	125	0.168	164.475	459.527	2.794	694.44	114.79	522.1	98.2	387.9180607	214.1608096	396.9538331	229.4774419	M4	0.557142857	0.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.171	125	47	3	0.063829787	2qF2	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	0.756401352	sgMsh2	cell line
chr2	152004194	152004194	T	C	ENSMUST00000073228.11	1	ENSMUSG00000027463	missense	V/A	25	Slc52a3	ENSMUST00000073228.11:c.74T>C	ENSMUSP00000072961.5:p.Val25Ala	H-2-Kb	8	6	6	INGLWAEL	INGLWVEL	SMMPMBEC	144.125	415.662	2.884	49	0.469	176.594	546.352	3.094	646.97	156.97	525.5	212.8	567.204934	196.218522	415.6616909	144.1252256	M4	0.157142857	0.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.502	49	5	0	0	2qG3	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	2	1	sgMsh2	cell line
chr2	119139420	119139420	GT	G	ENSMUST00000094695.11	1	ENSMUSG00000070730	FS	T/X	387	Rmdn3	ENSMUST00000094695.11:c.1159del	ENSMUSP00000092283.5:p.Thr387ArgfsTer46	H-2-Kb	8	37	0	YSQDFQKL	NA	SMM	227.898	NA	NA	111	0.297	263.57	NA	NA	NA	233.55	NA	302.9	NA	227.8977303	NA	293.5891489	M4	-1.228571429	-1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.308	111	32	3	0.09375	2qE5	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr2	130275979	130275979	T	C	ENSMUST00000103198.10	1	ENSMUSG00000027405	missense	V/A	125	Nop56	ENSMUST00000103198.10:c.374T>C	ENSMUSP00000099487.4:p.Val125Ala	H-2-Kb	8	11	1	ARLHFHNL	VRLHFHNL	SMM	145.794	38.703	0.265	124	0.218	264.629	47.855	0.181	52.98	382.79	114.7	456.8	38.70258739	145.794117	42.73069928	146.4670721	M4	-0.571428571	-0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.207	124	375	74	0.197333333	2qF1	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	0.915643742	sgMsh2	cell line
chr2	158495606	158495606	C	A	ENSMUST00000109485.8	1	ENSMUSG00000027652	missense	L/I	1496	Ralgapb	ENSMUST00000109485.8:c.4486C>A	ENSMUSP00000105111.2:p.Leu1496Ile	H-2-Kb	8	10	2	AIFQEVGL	ALFQEVGL	SMMPMBEC	137.006	468.533	3.42	112	0.134	277.086	992.844	3.583	2896.55	412.65	1197.3	363.3	788.3879904	190.8710225	468.5328006	137.0061303	M4	1.128571429	1.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.134	112	68	11	0.161764706	2qH1	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	0.592735562	sgMsh2	cell line
chr2	150763636	150763636	A	G	ENSMUST00000094467.5	1	ENSMUSG00000033068	missense	Y/C	262	Entpd6	ENSMUST00000094467.5:c.785A>G	ENSMUSP00000092038.5:p.Tyr262Cys	H-2-Kb	8	9	3	KLCSYSYL	KLYSYSYL	SMMPMBEC	164.339	16.51	0.1	52	0.231	346.526	13.055	0.038	7.12	660.83	9.6	482.8	17.85418375	210.2519343	16.50973111	164.3387578	M4	0.842857143	0.842857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.277	52	53	14	0.264150943	2qG3	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr2	132240580	132240580	A	G	ENSMUST00000110164.7	2	ENSMUSG00000027341	missense	F/S	90	Tmem230	ENSMUST00000110164.7:c.269T>C	ENSMUSP00000105793.1:p.Phe90Ser	H-2-Kb	9	10	2	VSLPGFYHL	VFLPGFYHL	NetMHC	22.77	187.13	8.218	125	0.168	93.901	246.108	2.621	187.13	22.77	200.4	30	291.8166046	157.8010905	341.3893746	169.9221522	M4	0.557142857	0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.171	125	47	3	0.063829787	2qF2	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	0.756401352	sgMsh2	cell line
chr2	180714861	180714861	A	G	ENSMUST00000078687.5	1	ENSMUSG00000027573	missense	N/S	97	Gid8	ENSMUST00000078687.5:c.290A>G	ENSMUSP00000077753.5:p.Asn97Ser	H-2-Kb	9	10	2	TSRYLYFHL	TNRYLYFHL	NetMHC	31.73	61.26	1.931	94	0.191	64.842	81.222	1.253	61.26	31.73	45.4	34.6	101.1835704	95.08455975	115.9444594	104.2917608	M4	0.014285714	0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	94	156	48	0.307692308	2qH4	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	0.884679944	sgMsh2	cell line
chr2	172454295	172454295	T	C	ENSMUST00000099060.1	1	ENSMUSG00000074569	missense	H/R	203	Gcnt7	ENSMUST00000099060.1:c.608A>G	ENSMUSP00000096659.1:p.His203Arg	H-2-Kb	9	8	4	FQWRYVMNL	FQWHYVMNL	NetMHC	44.73	91.86	2.054	117	0.171	378.766	352.119	0.93	91.86	44.73	121.8	74.8	680.9418088	764.0292757	582.4383998	682.7315929	M4	-0.042857143	-0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.189	117	0	0	NA	2qH3	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	0.836022547	sgMsh2	cell line
chr2	144511505	144511505	A	G	ENSMUST00000081982.11	1	ENSMUSG00000037259	missense	L/P	154	Dzank1	ENSMUST00000081982.11:c.461T>C	ENSMUSP00000080643.5:p.Leu154Pro	H-2-Kb	9	9	3	VNPRRLADL	VNLRRLADL	NetMHC	51.88	26.26	0.506	137	0.219	158.311	62.916	0.397	26.26	51.88	46.9	167.6	99.79527977	171.044849	78.93143527	149.021867	M4	-0.671428571	-0.614285714	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.235	137	0	0	NA	2qG1	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr2	91688761	91688761	A	T	ENSMUST00000076803.11	1	ENSMUSG00000027244	missense	V/D	113	Atg13	ENSMUST00000076803.11:c.338T>A	ENSMUSP00000076081.5:p.Val113Asp	H-2-Kb	9	11	1	DSYTVYNRL	VSYTVYNRL	NetMHC	58.79	3.32	0.056	95	0.158	116.578	10.351	0.089	3.32	58.79	4.4	95.4	16.4478827	137.7558339	16.30234201	160.7866549	M4	-0.471428571	-0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.148	95	150	20	0.133333333	2qE1	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.654663158	sgMsh2	cell line
chr2	180583499	180583499	A	G	ENSMUST00000029085.8	1	ENSMUSG00000027569	missense	T/A	83	Mrgbp	ENSMUST00000029085.8:c.247A>G	ENSMUSP00000029085.8:p.Thr83Ala	H-2-Kb	9	4	8	VIWDHLSAM	VIWDHLSTM	NetMHCpan	73.8	57.5	0.779	77	0.195	77.793	86.56	1.113	88.57	75.95	57.5	73.8	84.54929682	79.63610307	91.88613834	85.35913393	M4	-0.128571429	0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	77	69	19	0.275362319	2qH4	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	0.884679944	sgMsh2	cell line
chr2	111335694	111335694	C	A	ENSMUST00000099618.1	NA	ENSMUSG00000096554	missense	R/M	128	Olfr1282	ENSMUST00000099618.1:c.383G>T	ENSMUSP00000097213.1:p.Arg128Met	H-2-Kb	9	10	2	CMPLHYSSI	CRPLHYSSI	NetMHC	94.4	1410.95	14.947	605	0.203	136.949	1266.807	9.25	1410.95	94.4	2800.2	169.4	724.6194716	104.4984864	1122.664526	174.2809827	M4	0.085714286	0.185714286	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.202	605	0	0	NA	2qE3	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	0.893526743	sgMsh2	cell line
chr2	91284247	91284247	A	G	ENSMUST00000102594.10	1	ENSMUSG00000040591	missense	F/L	147	1110051M20Rik	ENSMUST00000102594.10:c.439T>C	ENSMUSP00000099654.4:p.Phe147Leu	H-2-Kb	9	8	4	QIQLYYSEF	QIQFYYSEF	SMM	177.873	191.034	1.074	209	0.239	233.567	248.13	1.062	224.46	181.21	352.1	442.3	191.0337056	177.8729877	271.8003427	285.9235978	M4	-0.542857143	-0.3	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	209	48	2	0.041666667	2qE1	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	2	1	sgMsh2	cell line
chr2	130275979	130275979	T	C	ENSMUST00000103198.10	1	ENSMUSG00000027405	missense	V/A	125	Nop56	ENSMUST00000103198.10:c.374T>C	ENSMUSP00000099487.4:p.Val125Ala	H-2-Kb	9	10	2	GARLHFHNL	GVRLHFHNL	NetMHC	183.24	193.73	1.057	124	0.218	249.426	289.094	1.159	193.73	183.24	307.1	257.8	271.0878168	241.0515897	323.0353127	279.4151821	M4	-0.571428571	-0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.207	124	375	74	0.197333333	2qF1	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	0.915643742	sgMsh2	cell line
chr2	119139420	119139420	GT	G	ENSMUST00000094695.11	1	ENSMUSG00000070730	FS	T/X	387	Rmdn3	ENSMUST00000094695.11:c.1159del	ENSMUSP00000092283.5:p.Thr387ArgfsTer46	H-2-Kb	9	45	0	DGYIFLSAI	NA	NetMHC	187.49	NA	NA	111	0.297	309.473	NA	NA	NA	187.49	NA	212.4	NA	406.5462879	NA	510.7989549	M4	2.185714286	2.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.308	111	32	3	0.09375	2qE5	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr2	91284247	91284247	A	G	ENSMUST00000102594.10	1	ENSMUSG00000040591	missense	F/L	147	1110051M20Rik	ENSMUST00000102594.10:c.439T>C	ENSMUSP00000099654.4:p.Phe147Leu	H-2-Kb	9	9	3	IQLYYSEFL	IQFYYSEFL	NetMHCpan	192.4	29.6	0.154	209	0.239	382.31	125.453	0.328	51.33	204.72	29.6	192.4	199.5767748	559.8993973	219.4067579	608.4851727	M4	0.5	0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	209	48	2	0.041666667	2qE1	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	2	1	sgMsh2	cell line
chr2	91284247	91284247	A	G	ENSMUST00000102594.10	1	ENSMUSG00000040591	missense	F/L	147	1110051M20Rik	ENSMUST00000102594.10:c.439T>C	ENSMUSP00000099654.4:p.Phe147Leu	H-2-Kb	9	3	9	FLFAFQIQL	FLFAFQIQF	NetMHCpan	235.9	1129.7	4.789	209	0.239	317.333	742.822	2.341	735.56	268.86	1129.7	235.9	750.0841699	444.7438999	632.7760017	365.8053055	M4	1.242857143	2.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	209	48	2	0.041666667	2qE1	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	2	1	sgMsh2	cell line
chr2	117177703	117177703	A	G	ENSMUST00000028829.12	1	ENSMUSG00000027351	missense	I/M	363	Spred1	ENSMUST00000028829.12:c.1089A>G	ENSMUSP00000028829.6:p.Ile363Met	H-2-Kb	9	10	2	CMYQVSCML	CIYQVSCML	SMM	228.618	511.811	2.239	162	0.179	331.205	563.356	1.701	483.81	295.31	614.9	367.1	511.811453	228.6177783	851.6281337	411.386466	M4	0.971428571	0.971428571	TRUE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	162	149	33	0.22147651	2qE5	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	0.884679944	sgMsh2	cell line
chr2	111379635	111379635	T	C	ENSMUST00000062407.5	5	ENSMUSG00000108931	missense	F/L	212	Olfr1284	ENSMUST00000062407.5:c.634T>C	ENSMUSP00000052153.4:p.Phe212Leu	H-2-Kb	9	5	7	MTLGTFLLL	MTLGTFFLL	NetMHCpan	246.9	192.4	0.779	354	0.226	312.574	264.729	0.847	258.37	322.38	192.4	246.9	271.0878168	302.7680195	408.5545015	416.1500968	M4	2.414285714	2.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.23	354	0	0	NA	2qE3	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr2	127801272	127801272	G	A	ENSMUST00000028858.7	1	ENSMUSG00000027379	missense	L/F	1051	Bub1	ENSMUST00000028858.7:c.3151C>T	ENSMUSP00000028858.7:p.Leu1051Phe	H-2-Kb	9	11	3	VMFSEYKRS	VMLSEYKRS	SMM	58.225	163.347	2.805	129	0.178	370.638	1389.362	3.749	2414.6	609.98	5436.9	989.1	163.3465627	58.22506741	364.1245828	131.2955479	M4	-1.714285714	-0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.17	129	108	12	0.111111111	2qF1	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	0.751977952	sgMsh2	cell line
chr2	150763636	150763636	A	G	ENSMUST00000094467.5	1	ENSMUSG00000033068	missense	Y/C	262	Entpd6	ENSMUST00000094467.5:c.785A>G	ENSMUSP00000092038.5:p.Tyr262Cys	H-2-Kb	9	11	1	CSYSYLGLG	YSYSYLGLG	SMM	209.464	228.618	1.091	52	0.231	484.335	361.439	0.746	706.65	879.5	472.7	666.5	228.6177783	209.4642929	250.1785091	302.1690645	M4	0.485714286	0.485714286	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.277	52	53	14	0.264150943	2qG3	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr2	127363814	127363814	T	C	ENSMUST00000071902.4	NA	ENSMUSG00000058620	missense	Y/H	84	Adra2b	ENSMUST00000071902.4:c.250T>C	ENSMUSP00000071798.4:p.Tyr84His	H-2-Kb	9	7	5	LGYWHFWRA	LGYWYFWRA	NetMHCpan	87	91.1	1.047	100	0.23	423.076	338.271	0.8	509.07	924.07	91.1	87	416.9749833	520.1277201	259.5673122	326.0243217	M4	-0.885714286	-0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	100	0	0	NA	2qF1	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr3	106161214	106161214	GT	G	ENSMUST00000063062.8	1	ENSMUSG00000040809	FS	T/X	92	Chil3	ENSMUST00000063062.8:c.274del	ENSMUSP00000053923.8:p.Thr92LeufsTer68	H-2-Db	9	44	0	DSFVNITLM	NA	SMM	69.442	NA	NA	280	0.143	145.219	NA	NA	NA	198.06	NA	290.4	NA	69.44164496	NA	92.37830727	M4	1.857142857	1.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.15	280	0	0	NA	3qF2.2	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	0.663509958	sgMsh2	cell line
chr3	80860236	80860236	AT	A	ENSMUST00000029654.14	1	ENSMUSG00000028020	FS	I/X	226	Glrb	ENSMUST00000029654.14:c.676del	ENSMUSP00000029654.8:p.Ile226LeufsTer37	H-2-Db	9	20	0	RRISNMATV	NA	SMMPMBEC	200.249	NA	NA	86	0.291	384.587	NA	NA	NA	531.15	NA	1363	NA	238.0235894	NA	200.2488359	M4	1.057142857	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.297	86	5	0	0	3qE3	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr3	106161214	106161214	GT	G	ENSMUST00000063062.8	1	ENSMUSG00000040809	FS	T/X	92	Chil3	ENSMUST00000063062.8:c.274del	ENSMUSP00000053923.8:p.Thr92LeufsTer68	H-2-Kb	8	35	0	VRYSFSQL	NA	NetMHC	5.24	NA	NA	280	0.143	9.857	NA	NA	NA	5.24	NA	29.2	NA	9.879614526	NA	9.83422182	M4	-0.614285714	-0.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.15	280	0	0	NA	3qF2.2	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	0.663509958	sgMsh2	cell line
chr3	89423528	89423528	G	A	ENSMUST00000094378.9	1	ENSMUSG00000042626	missense	C/Y	196	Shc1	ENSMUST00000094378.9:c.587G>A	ENSMUSP00000091940.3:p.Cys196Tyr	H-2-Kb	8	7	5	ISLVYEAV	ISLVCEAV	NetMHC	10.85	693.28	63.897	82	0.207	33.804	558.823	16.531	693.28	10.85	1167.5	29.7	424.3654321	37.90879676	380.8377582	38.97086091	M4	1.2	1.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.213	82	278	71	0.255395683	3qF1	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	0.94218414	sgMsh2	cell line
chr3	105005546	105005546	C	A	ENSMUST00000077548.11	1	ENSMUSG00000062127	missense	A/S	341	Cttnbp2nl	ENSMUST00000077548.11:c.1021G>T	ENSMUSP00000076751.5:p.Ala341Ser	H-2-Kb	8	11	1	SAYSYAKA	AAYSYAKA	NetMHC	11.09	24.13	2.176	88	0.25	44.921	75.024	1.67	24.13	11.09	53.5	32.2	129.0446488	68.82401428	96.54727043	57.64212727	M4	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.258	88	65	22	0.338461538	3qF2.2	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr3	30636316	30636316	C	T	ENSMUST00000029252.7	1	ENSMUSG00000027702	missense	G/R	146	Lrrc34	ENSMUST00000029252.7:c.436G>A	ENSMUSP00000029252.7:p.Gly146Arg	H-2-Kb	8	11	1	RGMLFAAM	GGMLFAAM	NetMHC	13.49	112.2	8.317	101	0.198	45.458	147.45	3.244	112.2	13.49	73.6	20	342.5626424	90.7277206	182.7006111	70.91530907	M4	1.942857143	1.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.215	101	0	0	NA	3qA3	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	0.95103094	sgMsh2	cell line
chr3	108413893	108413893	CA	C	ENSMUST00000090558.9	1	ENSMUSG00000068740	FS	A/X	534	Celsr2	ENSMUST00000090558.9:c.1602del	ENSMUSP00000088046.3:p.Gly535ValfsTer46	H-2-Kb	8	17	0	SSIAWQGL	NA	NetMHC	35.86	NA	NA	119	0.202	74.623	NA	NA	NA	35.86	NA	62.8	NA	86.44502416	NA	89.27708467	M4	0.642857143	0.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.202	119	0	0	NA	3qF3	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	0.893526743	sgMsh2	cell line
chr3	84595028	84595028	A	G	ENSMUST00000062623.3	NA	ENSMUSG00000047819	missense	I/M	417	Tigd4	ENSMUST00000062623.3:c.1251A>G	ENSMUSP00000052320.3:p.Ile417Met	H-2-Kb	8	10	2	SMEEYAAL	SIEEYAAL	NetMHC	43.16	32.49	0.753	141	0.255	61.627	34.783	0.564	32.49	43.16	236.8	196.3	35.62377999	64.67553055	33.94220093	58.5787365	M4	0.142857143	0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.276	141	2	1	0.5	3qF1	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr3	82097612	82097612	G	A	ENSMUST00000193924.5	1	ENSMUSG00000033910	missense	T/I	622	Gucy1a1	ENSMUST00000193924.5:c.1865C>T	ENSMUSP00000142138.1:p.Thr622Ile	H-2-Kb	8	7	5	VSPTIYRL	VSPTTYRL	NetMHCpan	48.4	100.4	2.074	146	0.247	103.528	112.676	1.088	41.11	58.21	100.4	48.4	124.9510759	153.0171117	137.6385219	148.8469706	M4	-0.085714286	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.241	146	0	0	NA	3qE3	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr3	108624645	108624645	A	G	ENSMUST00000051145.14	1	ENSMUSG00000040389	missense	Q/R	449	Wdr47	ENSMUST00000051145.14:c.1346A>G	ENSMUSP00000057482.8:p.Gln449Arg	H-2-Kb	8	11	1	RMYQQMLL	QMYQQMLL	NetMHC	67.4	94.29	1.399	78	0.179	121.812	213.148	1.75	94.29	67.4	182.1	93.4	244.1968177	150.2242346	524.4933667	251.0383085	M4	0.442857143	0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.197	78	17	4	0.235294118	3qF3	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	0.871409745	sgMsh2	cell line
chr3	28794409	28794409	G	A	ENSMUST00000060500.8	1	ENSMUSG00000050192	missense	C/Y	139	Eif5a2	ENSMUST00000060500.8:c.416G>A	ENSMUSP00000050289.7:p.Cys139Tyr	H-2-Kb	8	7	5	VSVMYAMS	VSVMCAMS	SMM	72.734	814.217	11.194	230	0.243	100.979	2855.808	28.281	5114.17	120.91	4897.4	389.8	814.2166892	72.73442335	792.027024	81.04757034	M4	0.985714286	1.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.259	230	16	3	0.1875	3qA3	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr3	124321788	124321788	T	C	ENSMUST00000058994.5	NA	ENSMUSG00000044528	missense	I/T	199	Tram1l1	ENSMUST00000058994.5:c.596T>C	ENSMUSP00000062635.4:p.Ile199Thr	H-2-Kb	8	8	4	LIYTGLHL	LIYIGLHL	NetMHCpan	105.6	142.7	1.351	88	0.216	187.861	224.17	1.193	236.63	184.41	142.7	105.6	277.1660292	260.4593785	211.7093311	191.3110256	M4	0.928571429	0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.223	88	1	0	0	3qG1	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	0.986418137	sgMsh2	cell line
chr3	88449737	88449737	A	G	ENSMUST00000029700.11	1	ENSMUSG00000028064	missense	L/P	309	Sema4a	ENSMUST00000029700.11:c.926T>C	ENSMUSP00000029700.5:p.Leu309Pro	H-2-Kb	8	5	7	IIRHAVPL	IIRHAVLL	SMM	169.332	448.477	2.649	74	0.189	247.434	538.144	2.175	1021.35	349.03	569.6	310.9	448.476819	169.3323751	506.6872779	183.9670312	M4	0.714285714	0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.197	74	12	4	0.333333333	3qF1	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	0.871409745	sgMsh2	cell line
chr3	106161214	106161214	GT	G	ENSMUST00000063062.8	1	ENSMUSG00000040809	FS	T/X	92	Chil3	ENSMUST00000063062.8:c.274del	ENSMUSP00000053923.8:p.Thr92LeufsTer68	H-2-Kb	8	24	0	RSVPWSLL	NA	NetMHCpan	274.9	NA	NA	280	0.143	394.995	NA	NA	NA	355.74	NA	274.9	NA	449.5106648	NA	434.2501729	M4	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.15	280	0	0	NA	3qF2.2	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	0.663509958	sgMsh2	cell line
chr3	107311516	107311516	C	CT	ENSMUST00000029502.13	1	ENSMUSG00000027896	FS	L/LX	478	Slc16a4	ENSMUST00000029502.13:c.1440dup	ENSMUSP00000029502.7:p.Val481CysfsTer5	H-2-Kb	8	9	6	VSLFFCTT	VSLFFVPL	NetMHCpan	99	3.7	0.037	122	0.156	150.102	2.995	0.02	3.56	384.31	3.7	99	2.252890066	166.6249377	2.430748352	133.5795574	M4	1.385714286	2.085714286	FALSE	FALSE	FALSE	1	FALSE	0	Strelka2;Vardict	2	0.1557	122	0	0	NA	3qF2.3	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	0.688723336	sgMsh2	cell line
chr3	90190923	90190923	C	T	ENSMUST00000029548.8	5	ENSMUSG00000027939	missense	S/L	1394	Nup210l	ENSMUST00000029548.8:c.4181C>T	ENSMUSP00000029548.4:p.Ser1394Leu	H-2-Kb	8	8	4	RTLLAFPL	RTLSAFPL	NetMHCpan	184	237.9	1.293	148	0.236	202.884	249.781	1.231	490.66	429.13	237.9	184	235.9065504	193.0812048	261.6616044	212.686537	M4	1.957142857	1.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.244	148	1	0	0	3qF1	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr3	38888297	38888297	G	GC	ENSMUST00000061260.7	1	ENSMUSG00000046743	FS	-/X	446-447	Fat4	ENSMUST00000061260.7:c.1343dup	ENSMUSP00000061836.7:p.Thr449TyrfsTer19	H-2-Kb	8	19	0	GSFVCGQL	NA	SMMPMBEC	118.779	NA	NA	80	0.287	332.28	NA	NA	NA	567.48	NA	419.8	NA	244.7597495	NA	118.7790917	M4	1.228571429	1.228571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.284	80	0	0	NA	3qB	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr3	106161214	106161214	GT	G	ENSMUST00000063062.8	1	ENSMUSG00000040809	FS	T/X	92	Chil3	ENSMUST00000063062.8:c.274del	ENSMUSP00000053923.8:p.Thr92LeufsTer68	H-2-Kb	8	54	0	STWTGSTL	NA	NetMHCpan	317	NA	NA	280	0.143	379.995	NA	NA	NA	978.08	NA	317	NA	440.2911945	NA	319.6980594	M4	-0.057142857	-0.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.15	280	0	0	NA	3qF2.2	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	0.663509958	sgMsh2	cell line
chr3	68927791	68927791	A	G	ENSMUST00000107812.7	5	ENSMUSG00000027778	missense	I/T	439	Ift80	ENSMUST00000107812.7:c.1316T>C	ENSMUSP00000103442.1:p.Ile439Thr	H-2-Kb	8	11	1	TIFLFEAS	IIFLFEAS	SMM	114.483	40.902	0.357	70	0.343	496.639	214.122	0.431	378.83	1363.31	368.3	827.8	40.90157201	114.482736	59.94321055	165.4778997	M4	1.628571429	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.356	70	22	5	0.227272727	3qE1	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	2	1	sgMsh2	cell line
chr3	89266743	89266743	T	G	ENSMUST00000107462.7	3	ENSMUSG00000042737	missense	L/V	4	Dpm3	ENSMUST00000107462.7:c.10T>G	ENSMUSP00000103086.1:p.Leu4Val	H-2-Kb	8	4	1	VTQWLWGL	LTQWLWGL	SMM	283.622	1434.63	5.058	70	0.357	404.513	1559.675	3.856	6651.54	1488.78	1453.1	408.4	1434.630303	283.6220554	1666.249377	400.6268017	M4	0.171428571	0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.345	70	80	14	0.175	3qF1	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	2	1	sgMsh2	cell line
chr3	82097612	82097612	G	A	ENSMUST00000193924.5	1	ENSMUSG00000033910	missense	T/I	622	Gucy1a1	ENSMUST00000193924.5:c.1865C>T	ENSMUSP00000142138.1:p.Thr622Ile	H-2-Kb	9	7	5	VSPTIYRLL	VSPTTYRLL	NetMHC	15.61	10.54	0.675	146	0.247	98.817	82.779	0.838	10.54	15.61	40.5	25.8	125.0575741	171.8343562	191.0952975	199.6411211	M4	0.571428571	0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.241	146	0	0	NA	3qE3	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr3	84595028	84595028	A	G	ENSMUST00000062623.3	NA	ENSMUSG00000047819	missense	I/M	417	Tigd4	ENSMUST00000062623.3:c.1251A>G	ENSMUSP00000052320.3:p.Ile417Met	H-2-Kb	9	9	3	LSMEEYAAL	LSIEEYAAL	NetMHC	22.2	22.98	1.035	141	0.255	90.051	99.752	1.108	22.98	22.2	45.6	33.8	161.1053638	148.9738357	153.9040328	146.3019114	M4	0.142857143	0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.276	141	2	1	0.5	3qF1	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr3	30636316	30636316	C	T	ENSMUST00000029252.7	1	ENSMUSG00000027702	missense	G/R	146	Lrrc34	ENSMUST00000029252.7:c.436G>A	ENSMUSP00000029252.7:p.Gly146Arg	H-2-Kb	9	11	1	RGMLFAAML	GGMLFAAML	NetMHCpan	25	124.8	4.992	101	0.198	300.813	391.686	1.302	142	26.04	124.8	25	641.3720055	575.5857057	682.7315929	656.5230826	M4	2.542857143	2.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.215	101	0	0	NA	3qA3	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	0.95103094	sgMsh2	cell line
chr3	106161214	106161214	GT	G	ENSMUST00000063062.8	1	ENSMUSG00000040809	FS	T/X	92	Chil3	ENSMUST00000063062.8:c.274del	ENSMUSP00000053923.8:p.Thr92LeufsTer68	H-2-Kb	9	34	0	TVRYSFSQL	NA	NetMHC	72.25	NA	NA	280	0.143	200.37	NA	NA	NA	72.25	NA	169.4	NA	250.6744092	NA	231.3396105	M4	-0.614285714	-0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.15	280	0	0	NA	3qF2.2	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	0.663509958	sgMsh2	cell line
chr3	68927791	68927791	A	G	ENSMUST00000107812.7	5	ENSMUSG00000027778	missense	I/T	439	Ift80	ENSMUST00000107812.7:c.1316T>C	ENSMUSP00000103442.1:p.Ile439Thr	H-2-Kb	9	11	1	TIFLFEAST	IIFLFEAST	NetMHC	181.4	78.59	0.433	70	0.343	236.705	140.504	0.594	78.59	181.4	219.4	418.7	139.6722084	239.3922023	141.3350901	234.0183969	M4	0.885714286	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.356	70	22	5	0.227272727	3qE1	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	2	1	sgMsh2	cell line
chr3	80860236	80860236	AT	A	ENSMUST00000029654.14	1	ENSMUSG00000028020	FS	I/X	226	Glrb	ENSMUST00000029654.14:c.676del	ENSMUSP00000029654.8:p.Ile226LeufsTer37	H-2-Kb	9	6	6	VQLEKLLYL	VQLEKIALP	NetMHC	204.77	13999.81	68.368	86	0.291	281.513	8030.813	28.527	13999.81	204.77	16761.3	288.8	1256.348137	274.2268658	2061.816449	309.2074862	M4	0.928571429	0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.297	86	5	0	0	3qE3	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr3	95008482	95008482	T	C	ENSMUST00000019482.7	1	ENSMUSG00000019338	missense	K/R	993	Zfp687	ENSMUST00000019482.7:c.2978A>G	ENSMUSP00000019482.1:p.Lys993Arg	H-2-Kb	9	8	4	SVKRFPCRL	SVKKFPCRL	NetMHCpan	181.6	255.5	1.407	74	0.311	436.752	462.473	1.059	295.28	204.99	255.5	181.6	629.6656471	668.5132201	679.5947262	729.8775406	M4	-0.771428571	-0.185714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.314	74	32	9	0.28125	3qF2.1	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr3	123552522	123552522	G	A	ENSMUST00000154668.7	5	ENSMUSG00000027977	missense	A/V	701	Ndst3	ENSMUST00000154668.7:c.2102C>T	ENSMUSP00000118207.1:p.Ala701Val	H-2-Kb	9	10	2	RVYSWYQHQ	RAYSWYQHQ	SMM	120.812	107.426	0.889	155	0.303	188.882	155.236	0.822	170.11	215.49	1963.7	2840.5	107.4261472	120.8119794	140.3621462	162.2743955	M4	-2.071428571	-0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.299	155	1	0	0	3qG1	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr4	45307923	45307923	CT	C	ENSMUST00000044673.8	1	ENSMUSG00000035601	FS	L/X	203	Trmt10b	ENSMUST00000044673.8:c.612del	ENSMUSP00000041052.2:p.Pro205LeufsTer8	H-2-Db	9	9	5	FSLFLWKPL	FSLFPLETL	SMM	212.628	545.281	2.564	246	0.232	281.074	540.89	1.924	345.62	310.63	884.2	463.6	545.2805415	212.6277776	536.5003381	251.518538	M4	1.114285714	1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.228	246	51	1	0.019607843	4qB1	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr3	155137385	155137385	AT	A	ENSMUST00000194376.1	1	ENSMUSG00000028182	FS	N/X	298	Lrriq3	ENSMUST00000194376.1:c.897del	ENSMUSP00000142127.1:p.His300ThrfsTer32	H-2-Db	9	7	7	KLWVNFTEV	NA	SMMPMBEC	272.001	NA	NA	159	0.252	443.324	NA	NA	NA	666.64	NA	596.5	NA	290.1482797	NA	272.0006864	M4	0.371428571	0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.255	159	0	0	NA	3qH4	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr4	112389201	112389201	A	G	ENSMUST00000058605.2	1	ENSMUSG00000049972	missense	V/A	238	Skint9	ENSMUST00000058605.2:c.713T>C	ENSMUSP00000052670.2:p.Val238Ala	H-2-Kb	8	9	3	IMALFPGL	IMVLFPGL	NetMHC	14.94	6.77	0.453	76	0.237	32.007	20.652	0.645	6.77	14.94	11.4	16.4	32.04350395	47.61458462	29.90473787	58.04168341	M4	1.728571429	1.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.249	76	0	0	NA	4qD1	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr4	45307923	45307923	CT	C	ENSMUST00000044673.8	1	ENSMUSG00000035601	FS	L/X	203	Trmt10b	ENSMUST00000044673.8:c.612del	ENSMUSP00000041052.2:p.Pro205LeufsTer8	H-2-Kb	8	10	4	SLFLWKPL	SLFPLETL	NetMHCpan	45.9	278.7	6.072	246	0.232	65.889	861.472	13.075	1564.85	78.53	278.7	45.9	803.0452175	78.47656766	919.8986892	53.30156983	M4	1.114285714	1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.228	246	51	1	0.019607843	4qB1	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr4	120886945	120886945	C	T	ENSMUST00000071093.8	1	ENSMUSG00000032890	missense	P/L	124	Rims3	ENSMUST00000071093.8:c.371C>T	ENSMUSP00000068178.2:p.Pro124Leu	H-2-Kb	8	7	5	TFIFLTRL	TFIFPTRL	NetMHCpan	49.6	106	2.137	76	0.237	194.02	549.467	2.832	531.73	162.75	106	49.6	567.204934	225.2890066	685.0779666	240.8463117	M4	1.785714286	1.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.239	76	0	0	NA	4qD2.2	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr3	146584619	146584619	A	C	ENSMUST00000200633.1	1	ENSMUSG00000028185	missense	L/R	199	Dnase2b	ENSMUST00000200633.1:c.596T>G	ENSMUSP00000142872.1:p.Leu199Arg	H-2-Kb	8	5	7	STFHWKRI	STFHWKLI	SMMPMBEC	144.457	341.775	2.366	82	0.195	192.819	354.532	1.839	367.29	243.23	186.2	161.9	499.7352678	223.738128	341.7747702	144.4574685	M4	-0.842857143	-0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	82	0	0	NA	3qH2	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	0.884679944	sgMsh2	cell line
chr4	20064005	20064005	A	C	ENSMUST00000098242.3	1	ENSMUSG00000073987	missense	K/T	234	Ggh	ENSMUST00000098242.3:c.701A>C	ENSMUSP00000095843.3:p.Lys234Thr	H-2-Kb	8	10	2	FTYPVYAV	FKYPVYAV	SMM	232.135	1272.741	5.483	100	0.27	311.21	3820.621	12.277	5414.14	319.82	5562.8	302.6	1272.740898	232.1346655	2227.101447	387.9180607	M4	0.757142857	0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.282	100	205	62	0.302439024	4qA3	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr4	45882738	45882738	A	C	ENSMUST00000107783.7	5	ENSMUSG00000028327	missense	N/T	483	Stra6l	ENSMUST00000107783.7:c.1448A>C	ENSMUSP00000103412.1:p.Asn483Thr	H-2-Kb	8	6	6	FLFFYTVL	FLFFYNVL	SMMPMBEC	55.048	77.4	1.406	95	0.253	72.938	101.5	1.392	438.39	334.69	125.6	88.1	73.91626265	57.7750061	77.39982879	55.04780419	M4	2.2	2.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.267	95	0	0	NA	4qB1	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr4	45882738	45882738	A	C	ENSMUST00000107783.7	5	ENSMUSG00000028327	missense	N/T	483	Stra6l	ENSMUST00000107783.7:c.1448A>C	ENSMUSP00000103412.1:p.Asn483Thr	H-2-Kb	8	5	7	YFLFFYTV	YFLFFYNV	SMM	172.084	57.908	0.337	95	0.253	411.14	144.594	0.352	205.87	584.19	564.6	1069.9	57.90819124	172.0838049	83.31822323	238.0893668	M4	2.057142857	2.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.267	95	0	0	NA	4qB1	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr4	53083890	53083890	A	G	ENSMUST00000030010.3	1	ENSMUSG00000015243	missense	W/R	648	Abca1	ENSMUST00000030010.3:c.1942T>C	ENSMUSP00000030010.3:p.Trp648Arg	H-2-Kb	8	11	1	RIYSVAVI	WIYSVAVI	SMM	334.765	451.586	1.349	57	0.211	400.859	795.858	1.985	1140.13	619.27	1407.1	446.3	451.5855118	334.7649647	409.0157201	355.4184757	M4	2.442857143	2.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.185	57	0	0	NA	4qB2	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	0.818328948	sgMsh2	cell line
chr4	41093679	41093679	A	G	ENSMUST00000055327.7	1	ENSMUSG00000028435	missense	V/A	245	Aqp3	ENSMUST00000055327.7:c.734T>C	ENSMUSP00000055110.7:p.Val245Ala	H-2-Kb	8	6	6	RHWWWAPI	RHWWWVPI	NetMHCpan	222.3	379.8	1.709	44	0.386	438.129	1265.319	2.888	2567.84	683.29	379.8	222.3	1512.655393	523.2870654	1017.981768	352.9717922	M4	-0.171428571	-0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.362	44	0	0	NA	4qA5	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	2	1	sgMsh2	cell line
chr4	112389201	112389201	A	G	ENSMUST00000058605.2	1	ENSMUSG00000049972	missense	V/A	238	Skint9	ENSMUST00000058605.2:c.713T>C	ENSMUSP00000052670.2:p.Val238Ala	H-2-Kb	9	8	4	VIMALFPGL	VIMVLFPGL	NetMHC	16.97	12.72	0.75	76	0.237	54.686	37.85	0.692	12.72	16.97	18.8	19.4	56.89970306	89.97254391	75.72686885	103.8125837	M4	1.728571429	2.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.249	76	0	0	NA	4qD1	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr4	124942369	124942369	T	C	ENSMUST00000094769.12	1	ENSMUSG00000044730	missense	Y/H	158	9930104L06Rik	ENSMUST00000094769.12:c.472T>C	ENSMUSP00000154851.1:p.Tyr158His	H-2-Kb	9	4	8	SSYLKRKHL	SSYLKRKYL	NetMHC	33.01	28.82	0.873	99	0.232	69.015	66.097	0.958	28.82	33.01	64.1	72.7	68.09418088	65.32960014	84.382036	77.13473645	M4	-1.314285714	-1.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.24	99	19	3	0.157894737	4qD2.2	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr4	120886945	120886945	C	T	ENSMUST00000071093.8	1	ENSMUSG00000032890	missense	P/L	124	Rims3	ENSMUST00000071093.8:c.371C>T	ENSMUSP00000068178.2:p.Pro124Leu	H-2-Kb	9	6	6	GTFIFLTRL	GTFIFPTRL	NetMHCpan	28.1	39.6	1.409	76	0.237	60.436	144.364	2.389	86.31	36.1	39.6	28.1	215.332707	91.43448014	202.4184057	84.77152578	M4	1.785714286	1.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.239	76	0	0	NA	4qD2.2	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr3	148833898	148833898	T	C	ENSMUST00000197567.4	2	ENSMUSG00000028184	missense	I/M	995	Adgrl2	ENSMUST00000197567.4:c.2985A>G	ENSMUSP00000143626.1:p.Ile995Met	H-2-Kb	9	10	2	FMWSFIGPV	FIWSFIGPV	NetMHC	99.96	120.28	1.203	103	0.214	128.505	275.439	2.143	120.28	99.96	370.4	270.9	250.097874	111.7146168	300.7807237	145.2947761	M4	1.114285714	1.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.229	103	52	21	0.403846154	3qH3	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr4	104679526	104679526	GA	G	ENSMUST00000106830.8	1	ENSMUSG00000028519	FS	E/X	171	Dab1	ENSMUST00000106830.8:c.518del	ENSMUSP00000102443.2:p.Lys173ArgfsTer68	H-2-Kb	9	57	0	RTFTRFPPA	NA	NetMHCpan	78.3	NA	NA	92	0.239	222.469	NA	NA	NA	135.73	NA	78.3	NA	419.8653158	NA	309.2074862	M4	-0.142857143	-0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.25	92	0	0	NA	4qC6	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr3	157312902	157312902	C	T	ENSMUST00000074015.10	1	ENSMUSG00000040037	missense	L/F	347	Negr1	ENSMUST00000074015.10:c.1039C>T	ENSMUSP00000073664.4:p.Leu347Phe	H-2-Kb	9	12	9	IFYLKNAIF	IFYLKNAIL	SMM	146.592	86.918	0.593	106	0.179	161.23	88.179	0.547	89.44	172.75	131.7	353.4	86.91805512	146.5919088	86.54659777	149.7097207	M4	0.6	0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.192	106	0	0	NA	3qH4	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	0.849292746	sgMsh2	cell line
chr4	45882738	45882738	A	C	ENSMUST00000107783.7	5	ENSMUSG00000028327	missense	N/T	483	Stra6l	ENSMUST00000107783.7:c.1448A>C	ENSMUSP00000103412.1:p.Asn483Thr	H-2-Kb	9	5	7	YFLFFYTVL	YFLFFYNVL	SMMPMBEC	92.95	97.331	1.047	95	0.253	140.732	143.325	1.018	189.32	187.9	406.9	303.5	85.92311238	93.56426278	97.33073433	92.95012968	M4	2.2	2.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.267	95	0	0	NA	4qB1	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr4	45307923	45307923	CT	C	ENSMUST00000044673.8	1	ENSMUSG00000035601	FS	L/X	203	Trmt10b	ENSMUST00000044673.8:c.612del	ENSMUSP00000041052.2:p.Pro205LeufsTer8	H-2-Kb	9	9	5	FSLFLWKPL	FSLFPLETL	NetMHCpan	127.2	1483.2	11.66	246	0.232	215.539	984.497	4.568	761.94	209.13	1483.2	127.2	889.4263671	253.577082	1079.567993	221.9473684	M4	1.114285714	1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.228	246	51	1	0.019607843	4qB1	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr4	62340332	62340332	C	T	ENSMUST00000084527.9	1	ENSMUSG00000066151	missense	V/I	133	Fkbp15	ENSMUST00000084527.9:c.397G>A	ENSMUSP00000081575.3:p.Val133Ile	H-2-Kb	9	3	9	IHLNFELMI	IHLNFELMV	NetMHC	279.9	243.41	0.87	71	0.141	459.795	489.455	1.065	243.41	279.9	491.1	415.8	508.2881677	561.1900987	487.8092149	503.7905305	M4	1.4	1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.145	71	22	1	0.045454545	4qB3	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	0.641392959	sgMsh2	cell line
chr3	155137385	155137385	AT	A	ENSMUST00000194376.1	1	ENSMUSG00000028182	FS	N/X	298	Lrriq3	ENSMUST00000194376.1:c.897del	ENSMUSP00000142127.1:p.His300ThrfsTer32	H-2-Kb	9	21	0	LTFHQYKGI	NA	NetMHCpan	249.3	NA	NA	159	0.252	334.616	NA	NA	NA	317.47	NA	249.3	NA	377.6678362	NA	351.7628732	M4	-0.714285714	-0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.255	159	0	0	NA	3qH4	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr4	45882738	45882738	A	C	ENSMUST00000107783.7	5	ENSMUSG00000028327	missense	N/T	483	Stra6l	ENSMUST00000107783.7:c.1448A>C	ENSMUSP00000103412.1:p.Asn483Thr	H-2-Kb	9	4	8	NYFLFFYTV	NYFLFFYNV	SMM	194.585	162.971	0.838	95	0.253	271.375	172.885	0.637	139.12	325.02	182.8	260.1	162.970876	194.5852873	236.1837425	282.6506575	M4	2.057142857	2.057142857	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.267	95	0	0	NA	4qB1	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr4	104679526	104679526	GA	G	ENSMUST00000106830.8	1	ENSMUSG00000028519	FS	E/X	171	Dab1	ENSMUST00000106830.8:c.518del	ENSMUSP00000102443.2:p.Lys173ArgfsTer68	H-2-Kb	9	24	0	CTRPFWKRM	NA	NetMHCpan	330.5	NA	NA	92	0.239	394.527	NA	NA	NA	367.25	NA	330.5	NA	421.8033261	NA	629.8686601	M4	-1.528571429	-0.9	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.25	92	0	0	NA	4qC6	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr3	155101249	155101249	GC	G	ENSMUST00000029833.12	1	ENSMUSG00000028182	FS	S/X	178	Lrriq3	ENSMUST00000029833.12:c.537del	ENSMUSP00000029833.7:p.Ser180ValfsTer10	H-2-Kb	9	10	4	FSPVYSLTF	NA	NetMHC	390.17	NA	NA	152	0.237	450.538	NA	NA	NA	390.17	NA	405.5	NA	495.5756965	NA	783.8807509	M4	0.914285714	0.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.226	152	0	0	NA	3qH4	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	0.999688336	sgMsh2	cell line
chr4	112389201	112389201	A	G	ENSMUST00000058605.2	1	ENSMUSG00000049972	missense	V/A	238	Skint9	ENSMUST00000058605.2:c.713T>C	ENSMUSP00000052670.2:p.Val238Ala	H-2-Kb	9	9	3	IMALFPGLI	IMVLFPGLI	SMM	244.968	220.348	0.899	76	0.237	300.594	230.239	0.766	240.13	437.23	191.5	266.8	220.3484501	244.968363	259.5673122	334.3874735	M4	2.1	2.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.249	76	0	0	NA	4qD1	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr4	45882738	45882738	A	C	ENSMUST00000107783.7	5	ENSMUSG00000028327	missense	N/T	483	Stra6l	ENSMUST00000107783.7:c.1448A>C	ENSMUSP00000103412.1:p.Asn483Thr	H-2-Kb	9	6	6	FLFFYTVLL	FLFFYNVLL	SMMPMBEC	233.48	291.911	1.25	95	0.253	369.011	501.973	1.36	662.92	466.31	603.9	487.9	400.0460623	271.7127388	291.9106903	233.4801695	M4	2.2	2.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.267	95	0	0	NA	4qB1	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr3	148833898	148833898	T	C	ENSMUST00000197567.4	2	ENSMUSG00000028184	missense	I/M	995	Adgrl2	ENSMUST00000197567.4:c.2985A>G	ENSMUSP00000143626.1:p.Ile995Met	H-2-Kb	9	7	5	DNYFMWSFI	DNYFIWSFI	SMM	304.166	798.197	2.624	103	0.214	448.263	882.383	1.968	1757.72	638.48	893.3	522.2	798.1968324	304.1655332	871.4651012	374.3260056	M4	1.285714286	1.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.229	103	52	21	0.403846154	3qH3	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr4	55011581	55011581	G	GT	ENSMUST00000098070.9	5	ENSMUSG00000060206	FS	-/X	1182-1183	Zfp462	ENSMUST00000098070.9:c.3553dup	ENSMUSP00000095677.3:p.Cys1185LeufsTer5	H-2-Kb	9	9	6	TEMFFLPAL	TEMFFCQHC	NetMHCpan	327.1	8762.2	26.788	68	0.162	361.978	7060.762	19.506	8886.24	652.34	8762.2	327.1	5359.323836	363.1700284	3230.353127	360.7862685	M4	2.185714286	2.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.171	68	25	0	0	4qB2	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	0.756401352	sgMsh2	cell line
chr4	45882738	45882738	A	C	ENSMUST00000107783.7	5	ENSMUSG00000028327	missense	N/T	483	Stra6l	ENSMUST00000107783.7:c.1448A>C	ENSMUSP00000103412.1:p.Asn483Thr	H-2-Kb	9	3	9	FNYFLFFYT	FNYFLFFYN	SMM	179.933	335.05	1.862	95	0.253	469.539	1698.875	3.618	3062.7	745.77	4667.3	1139.7	335.0502914	179.9326599	251.3332806	193.3080768	M4	1.271428571	1.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.267	95	0	0	NA	4qB1	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr3	155137385	155137385	AT	A	ENSMUST00000194376.1	1	ENSMUSG00000028182	FS	N/X	298	Lrriq3	ENSMUST00000194376.1:c.897del	ENSMUSP00000142127.1:p.His300ThrfsTer32	H-2-Kb	9	10	4	VNFTEVGWM	NA	SMMPMBEC	346.937	NA	NA	159	0.252	357.03	NA	NA	NA	962.72	NA	361.6	NA	352.4601324	NA	346.9365057	M4	0.485714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.255	159	0	0	NA	3qH4	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr4	136554214	136554214	T	A	ENSMUST00000105847.7	5	ENSMUSG00000036940	missense	K/M	682	Kdm1a	ENSMUST00000105847.7:c.2045A>T	ENSMUSP00000101473.1:p.Lys682Met	H-2-Db	9	6	6	FGNLNMVVL	FGNLNKVVL	NetMHC	15.68	50.61	3.228	105	0.19	76.126	173.018	2.273	50.61	15.68	144.4	54.4	281.5917975	138.8736979	201.6368945	97.8520661	M4	1.557142857	1.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.204	105	196	5	0.025510204	4qD3	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	0.902373543	sgMsh2	cell line
chr5	34000987	34000987	C	T	ENSMUST00000056355.8	1	ENSMUSG00000048142	missense	A/V	247	Nat8l	ENSMUST00000056355.8:c.740C>T	ENSMUSP00000059313.8:p.Ala247Val	H-2-Db	9	3	9	SAVVLGTTV	SAVVLGTTA	NetMHC	36.06	307.29	8.522	55	0.218	166.534	380.567	2.285	307.29	36.06	2759.6	405.8	327.0544028	145.7538382	434.0802235	187.3138973	M4	2.085714286	2.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.245	55	1	0	0	5qB2	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr5	34848948	34848948	T	A	ENSMUST00000080036.2	1	ENSMUSG00000029104	missense	H/Q	1400	Htt	ENSMUST00000080036.2:c.4200T>A	ENSMUSP00000078945.2:p.His1400Gln	H-2-Db	9	8	4	NAIQNHIRL	NAIHNHIRL	NetMHCpan	42.5	130.5	3.071	181	0.282	128.892	250.646	1.945	219.7	50.95	130.5	42.5	281.5917975	206.8330804	333.8643134	252.6794949	M4	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.267	181	23	3	0.130434783	5qB2	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr4	155268251	155268251	T	G	ENSMUST00000030922.14	1	ENSMUSG00000029053	missense	K/T	473	Prkcz	ENSMUST00000030922.14:c.1418A>C	ENSMUSP00000030922.7:p.Lys473Thr	H-2-Db	9	5	7	FQVILETPI	FQVILEKPI	NetMHC	96.91	1744.74	18.004	174	0.305	220.135	1380.05	6.269	1744.74	96.91	2345.3	278.3	1015.359882	224.7087583	992.1332393	215.5609059	M4	1.6	1.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.295	174	42	10	0.238095238	4qE2	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr5	63806698	63806698	A	T	ENSMUST00000159584.2	1	ENSMUSG00000090061	missense	K/N	1208	Nwd2	ENSMUST00000159584.2:c.3624A>T	ENSMUSP00000124712.1:p.Lys1208Asn	H-2-Db	9	7	5	ILICNALSI	ILICKALSI	NetMHCpan	141.1	7481.9	53.026	175	0.217	238.859	9795.44	41.009	18580.86	208.18	7481.9	141.1	8762.337965	269.537999	10828.54237	322.5299134	M4	1.828571429	2.485714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.224	175	0	0	NA	5qC3.1	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	0.990841537	sgMsh2	cell line
chr5	57721359	57721359	T	C	ENSMUST00000191837.5	1	ENSMUSG00000029108	missense	L/S	752	Pcdh7	ENSMUST00000191837.5:c.2255T>C	ENSMUSP00000142319.1:p.Leu752Ser	H-2-Kb	8	5	7	RNISYTSL	RNISYTLL	NetMHC	17.31	17.09	0.987	166	0.199	37.571	44.968	1.197	17.09	17.31	18.2	19.2	71.73646964	55.94225905	78.83879904	59.94321055	M4	0.171428571	0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.213	166	47	0	0	5qC1	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	0.94218414	sgMsh2	cell line
chr5	20886561	20886561	A	G	ENSMUST00000115259.2	1	ENSMUSG00000045435	missense	Y/C	108	Tmem60	ENSMUST00000115259.2:c.323A>G	ENSMUSP00000110914.2:p.Tyr108Cys	H-2-Kb	8	9	3	LSCVFIPL	LSYVFIPL	SMMPMBEC	18.739	1.883	0.1	205	0.283	26.189	2.268	0.087	2.35	26.63	3.4	62.9	2.186452264	25.74779247	1.882521739	18.73872337	M4	2.2	2.2	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.291	205	111	34	0.306306306	5qA3	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr4	155966486	155966486	T	C	ENSMUST00000024338.4	1	ENSMUSG00000023571	missense	M/T	304	C1qtnf12	ENSMUST00000024338.4:c.911T>C	ENSMUSP00000024338.4:p.Met304Thr	H-2-Kb	8	12	6	SSFSGTLL	SSFSGMLL	NetMHCpan	66.9	50.3	0.752	142	0.183	86.988	70.723	0.813	34.09	71	50.3	66.9	95.22259222	121.8260042	91.14650073	102.9769442	M4	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.182	142	2	0	0	4qE2	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	0.805058749	sgMsh2	cell line
chr4	139640665	139640665	A	G	ENSMUST00000039818.9	1	ENSMUSG00000028737	missense	T/A	306	Aldh4a1	ENSMUST00000039818.9:c.916A>G	ENSMUSP00000043821.9:p.Thr306Ala	H-2-Kb	8	8	4	RFRAFPRL	RFRTFPRL	SMM	54.293	53.179	0.979	59	0.254	87.052	74.246	0.853	78.71	97.59	160.4	151.2	53.17897962	54.29252	69.78145169	76.51384027	M4	0.085714286	0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.269	59	14	6	0.428571429	4qD3	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr4	143656547	143656547	C	T	ENSMUST00000105771.1	5	ENSMUSG00000078513	missense	G/D	34	Gm13088	ENSMUST00000105771.1:c.101G>A	ENSMUSP00000101397.1:p.Gly34Asp	H-2-Kb	8	8	4	FIFDYTKI	FIFGYTKI	NetMHCpan	90.2	96	1.064	231	0.208	147.422	187.893	1.275	189.26	136.45	96	90.2	217.6406428	171.2931516	186.5262676	158.3944645	M4	0.342857143	0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.209	231	0	0	NA	4qE1	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	0.924490541	sgMsh2	cell line
chr5	86538011	86538011	T	C	ENSMUST00000116553.8	1	ENSMUSG00000048764	missense	M/V	166	Tmprss11f	ENSMUST00000116553.8:c.496A>G	ENSMUSP00000112252.2:p.Met166Val	H-2-Kb	8	9	3	ISVPSFSL	ISMPSFSL	NetMHCpan	102.9	36.1	0.351	126	0.214	207.483	135.317	0.652	55.98	137.8	36.1	102.9	214.6545013	277.1660292	219.1492557	335.5366776	M4	0.971428571	1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.242	126	0	0	NA	5qE1	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr5	34905586	34905586	A	G	ENSMUST00000080036.2	1	ENSMUSG00000029104	missense	H/R	2854	Htt	ENSMUST00000080036.2:c.8561A>G	ENSMUSP00000078945.2:p.His2854Arg	H-2-Kb	8	7	5	SIIYRCAL	SIIYHCAL	NetMHC	150.5	60.11	0.399	72	0.264	416.858	85.686	0.206	60.11	150.5	82.3	253.3	89.07175307	580.4168341	119.0529058	624.7985313	M4	1.614285714	1.614285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.292	72	21	7	0.333333333	5qB2	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr4	141623491	141623491	G	A	ENSMUST00000038661.7	1	ENSMUSG00000040740	missense	S/F	69	Slc25a34	ENSMUST00000038661.7:c.206C>T	ENSMUSP00000039188.7:p.Ser69Phe	H-2-Kb	8	9	3	FVFSVAAV	FVSSVAAV	SMM	142.475	3738.867	26.242	35	0.171	161.812	6250.351	38.627	8493.3	168.12	8324.9	511.8	3738.866857	142.4754378	4175.802981	155.5034397	M4	2.6	2.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.176	35	1	0	0	4qD3	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	0.77851835	sgMsh2	cell line
chr4	155069021	155069021	T	G	ENSMUST00000103180.3	1	ENSMUSG00000029047	missense	I/M	182	Pex10	ENSMUST00000103180.3:c.546T>G	ENSMUSP00000099469.3:p.Ile182Met	H-2-Kb	8	11	1	MHGTFYHL	IHGTFYHL	SMMPMBEC	155.503	71.571	0.46	102	0.314	235.779	80.872	0.343	80.51	309.1	169.9	352	81.23440428	162.4575876	71.57148034	155.5034397	M4	-0.314285714	-0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.31	102	7	2	0.285714286	4qE2	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr5	34848948	34848948	T	A	ENSMUST00000080036.2	1	ENSMUSG00000029104	missense	H/Q	1400	Htt	ENSMUST00000080036.2:c.4200T>A	ENSMUSP00000078945.2:p.His1400Gln	H-2-Kb	8	9	3	AIQNHIRL	AIHNHIRL	SMM	233.206	203.582	0.873	181	0.282	335.761	210.611	0.627	187.86	352.56	450.7	1017.2	203.5822922	233.2061504	217.6406428	318.9627742	M4	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.267	181	23	3	0.130434783	5qB2	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr4	143811579	143811579	A	G	ENSMUST00000075045.3	1	ENSMUSG00000059218	missense	I/T	274	Gm13084	ENSMUST00000075045.3:c.821T>C	ENSMUSP00000074557.3:p.Ile274Thr	H-2-Kb	8	10	2	VTTVISHL	VITVISHL	NetMHCpan	278.2	250	0.899	122	0.254	416.654	372.928	0.895	297.38	403.04	250	278.2	516.1072977	516.1072977	448.476819	430.2689433	M4	1.014285714	1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.255	122	0	0	NA	4qE1	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr5	3673162	3673162	T	C	ENSMUST00000014673.8	1	ENSMUSG00000014529	missense	I/T	231	Tmbim7	ENSMUST00000014673.8:c.692T>C	ENSMUSP00000014673.2:p.Ile231Thr	H-2-Kb	8	7	5	LIYGTIAL	LIYGIIAL	SMMPMBEC	338.641	366.218	1.081	134	0.239	379.899	400.735	1.055	501.32	404.38	344.3	444	435.2512229	355.4184757	366.2182643	338.6413603	M4	1.742857143	1.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.252	134	0	0	NA	5qA1	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr5	3673162	3673162	T	C	ENSMUST00000014673.8	1	ENSMUSG00000014529	missense	I/T	231	Tmbim7	ENSMUST00000014673.8:c.692T>C	ENSMUSP00000014673.2:p.Ile231Thr	H-2-Kb	8	5	7	VLLIYGTI	VLLIYGII	NetMHCpan	142	579.7	4.082	134	0.239	310.354	756.542	2.438	1677.7	445.42	579.7	142	772.2181412	337.0854446	740.8665723	283.6220554	M4	2.028571429	2.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.252	134	0	0	NA	5qA1	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr5	34905586	34905586	A	G	ENSMUST00000080036.2	1	ENSMUSG00000029104	missense	H/R	2854	Htt	ENSMUST00000080036.2:c.8561A>G	ENSMUSP00000078945.2:p.His2854Arg	H-2-Kb	8	8	4	IIYRCALR	IIYHCALR	SMM	145.459	271.481	1.866	72	0.264	346.557	1048.106	3.024	1769.82	509.57	6012.9	4831.1	271.4813499	145.4587999	326.3923717	183.5439188	M4	0.328571429	1.614285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.292	72	21	7	0.333333333	5qB2	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr5	23500293	23500293	A	T	ENSMUST00000115128.7	5	ENSMUSG00000029004	missense	S/C	1274	Kmt2e	ENSMUST00000115128.7:c.3820A>T	ENSMUSP00000110781.1:p.Ser1274Cys	H-2-Kb	8	10	2	RCYQRALL	RSYQRALL	SMMPMBEC	333.995	39.513	0.118	166	0.193	489.089	34.406	0.07	10.3	546.9	29.3	485.3	41.56616909	492.8786429	39.51299959	333.9950266	M4	0.371428571	0.371428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	166	85	17	0.2	5qA3	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	0.884679944	sgMsh2	cell line
chr4	155069021	155069021	T	G	ENSMUST00000103180.3	1	ENSMUSG00000029047	missense	I/M	182	Pex10	ENSMUST00000103180.3:c.546T>G	ENSMUSP00000099469.3:p.Ile182Met	H-2-Kb	8	6	6	VAWFYMHG	VAWFYIHG	SMM	88.052	124.377	1.413	102	0.314	255.688	481.612	1.884	1556.42	599.87	818.1	399.5	124.3769779	88.05215715	145.1242539	111.8767908	M4	0.1	0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.31	102	7	2	0.285714286	4qE2	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr4	154291298	154291298	G	T	ENSMUST00000030898.11	1	ENSMUSG00000029032	missense	P/T	80	Arhgef16	ENSMUST00000030898.11:c.238C>A	ENSMUSP00000030898.5:p.Pro80Thr	H-2-Kb	8	7	5	STQSTAAL	STQSPAAL	SMM	262.265	270.234	1.03	32	0.094	463.128	647.507	1.398	891.61	618.83	2628.9	1826.7	270.2340064	262.2647967	403.403814	307.4255792	M4	0.242857143	0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.117	32	32	7	0.21875	4qE2	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	0.517537767	sgMsh2	cell line
chr4	141623491	141623491	G	A	ENSMUST00000038661.7	1	ENSMUSG00000040740	missense	S/F	69	Slc25a34	ENSMUST00000038661.7:c.206C>T	ENSMUSP00000039188.7:p.Ser69Phe	H-2-Kb	8	7	5	RGFVFSVA	RGFVSSVA	NetMHCpan	196.3	6073.6	30.94	35	0.171	355.866	7183.709	20.187	17366.47	864.06	6073.6	196.3	7563.799359	397.8689062	6803.61923	313.8629122	M4	2.085714286	2.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.176	35	1	0	0	4qD3	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	0.77851835	sgMsh2	cell line
chr4	144376938	144376938	T	G	ENSMUST00000121109.1	5	ENSMUSG00000073721	missense	E/A	206	Pramef20	ENSMUST00000121109.1:c.617A>C	ENSMUSP00000112488.1:p.Glu206Ala	H-2-Kb	9	5	7	VNLDYVATL	VNLDYVETL	NetMHC	10.74	64.15	5.973	160	0.281	46.953	127.818	2.722	64.15	10.74	72.3	12.2	208.9825384	90.8050496	183.3369491	81.70525693	M4	1.157142857	1.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.277	160	0	0	NA	4qE1	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr4	135969256	135969256	A	G	ENSMUST00000067567.4	1	ENSMUSG00000028670	missense	M/T	178	Lypla2	ENSMUST00000067567.4:c.533T>C	ENSMUSP00000064204.4:p.Met178Thr	H-2-Kb	9	11	1	TVPVRFGAL	MVPVRFGAL	NetMHC	20.89	17.55	0.84	51	0.255	97.966	98.173	1.002	17.55	20.89	45.3	52.3	151.0462682	148.6312054	169.531342	143.6316005	M4	0.871428571	0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.281	51	79	19	0.240506329	4qD3	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr4	143895385	143895385	T	C	ENSMUST00000105767.1	5	ENSMUSG00000078512	missense	I/V	467	Pramef6	ENSMUST00000105767.1:c.1399A>G	ENSMUSP00000101393.1:p.Ile467Val	H-2-Kb	9	13	2	CVYSFVGNI	CIYSFVGNI	NetMHC	23.45	22.06	0.941	211	0.256	90.759	96.799	1.067	22.06	23.45	42.9	35.6	150.6988715	145.9183802	252.4933823	247.8848587	M4	0.785714286	1.6	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.265	211	0	0	NA	4qE1	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr5	52848016	52848016	A	G	ENSMUST00000031072.13	1	ENSMUSG00000029176	missense	Q/R	301	Anapc4	ENSMUST00000031072.13:c.902A>G	ENSMUSP00000031072.7:p.Gln301Arg	H-2-Kb	9	9	3	SVRDEFMHL	SVQDEFMHL	NetMHCpan	107.4	185.5	1.727	33	0.121	228.321	411.963	1.804	155.92	116.93	185.5	107.4	638.4251688	339.7113053	843.82036	474.5150595	M4	-0.885714286	-0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.138	33	142	40	0.281690141	5qC1	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	0.610429161	sgMsh2	cell line
chr4	155069021	155069021	T	G	ENSMUST00000103180.3	1	ENSMUSG00000029047	missense	I/M	182	Pex10	ENSMUST00000103180.3:c.546T>G	ENSMUSP00000099469.3:p.Ile182Met	H-2-Kb	9	10	2	YMHGTFYHL	YIHGTFYHL	NetMHC	159.62	219.23	1.373	102	0.314	188.296	355.71	1.889	219.23	159.62	277.8	182.9	433.6206938	193.6912491	687.4640623	332.0855664	M4	-0.314285714	-0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.31	102	7	2	0.285714286	4qE2	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr4	155069021	155069021	T	G	ENSMUST00000103180.3	1	ENSMUSG00000029047	missense	I/M	182	Pex10	ENSMUST00000103180.3:c.546T>G	ENSMUSP00000099469.3:p.Ile182Met	H-2-Kb	9	7	5	AWFYMHGTF	AWFYIHGTF	SMM	130.05	341.279	2.624	102	0.314	193.94	435.221	2.244	455.25	209.54	926.2	545.8	341.2793414	130.0498932	415.1929781	178.3405083	M4	0.271428571	0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.31	102	7	2	0.285714286	4qE2	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr4	143895385	143895385	T	C	ENSMUST00000105767.1	5	ENSMUSG00000078512	missense	I/V	467	Pramef6	ENSMUST00000105767.1:c.1399A>G	ENSMUSP00000101393.1:p.Ile467Val	H-2-Kb	9	10	5	RNFCVYSFV	RNFCIYSFV	NetMHCpan	85.7	73	0.852	211	0.256	357.494	308.946	0.864	234.97	248.06	73	85.7	382.9217191	472.1826226	388.3738676	466.9280884	M4	2.057142857	2.057142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.265	211	0	0	NA	4qE1	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr5	3673162	3673162	T	C	ENSMUST00000014673.8	1	ENSMUSG00000014529	missense	I/T	231	Tmbim7	ENSMUST00000014673.8:c.692T>C	ENSMUSP00000014673.2:p.Ile231Thr	H-2-Kb	9	7	5	LIYGTIALV	LIYGIIALV	NetMHC	255.57	661.63	2.589	134	0.239	399.072	568.543	1.425	661.63	255.57	1069.9	902.4	475.4556362	346.02701	472.3348608	452.1161284	M4	1.7	1.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.252	134	0	0	NA	5qA1	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr4	143656547	143656547	C	T	ENSMUST00000105771.1	5	ENSMUSG00000078513	missense	G/D	34	Gm13088	ENSMUST00000105771.1:c.101G>A	ENSMUSP00000101397.1:p.Gly34Asp	H-2-Kb	9	8	4	FIFDYTKIL	FIFGYTKIL	NetMHCpan	228.1	295.6	1.296	231	0.208	278.71	290.105	1.041	422.83	317.65	295.6	228.1	243.8428356	260.0818226	284.6098982	297.3377153	M4	0.242857143	0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.209	231	0	0	NA	4qE1	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	0.924490541	sgMsh2	cell line
chr4	139640665	139640665	A	G	ENSMUST00000039818.9	1	ENSMUSG00000028737	missense	T/A	306	Aldh4a1	ENSMUST00000039818.9:c.916A>G	ENSMUSP00000043821.9:p.Thr306Ala	H-2-Kb	9	4	8	QNLDRFRAF	QNLDRFRTF	SMM	226.001	239.944	1.062	59	0.254	312.457	354.948	1.136	385.37	323.44	1098.6	1301.5	239.9440583	226.0008122	324.526376	301.4740949	M4	-0.185714286	-0.185714286	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.269	59	14	6	0.428571429	4qD3	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr4	155659780	155659780	T	C	ENSMUST00000103176.9	1	ENSMUSG00000029060	missense	T/A	142	Mib2	ENSMUST00000103176.9:c.424A>G	ENSMUSP00000099465.3:p.Thr142Ala	H-2-Kb	9	10	2	VALSPRQGL	VTLSPRQGL	SMM	314.13	432.623	1.377	23	0.217	461.314	595.819	1.292	415.46	334.8	844.1	932.6	432.6233939	314.1304236	759.0143731	587.8276359	M4	-0.457142857	-0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.239	23	24	4	0.166666667	4qE2	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr5	3673162	3673162	T	C	ENSMUST00000014673.8	1	ENSMUSG00000014529	missense	I/T	231	Tmbim7	ENSMUST00000014673.8:c.692T>C	ENSMUSP00000014673.2:p.Ile231Thr	H-2-Kb	9	4	8	SVLLIYGTI	SVLLIYGII	NetMHCpan	276.2	1014.9	3.675	134	0.239	446.055	804.767	1.804	1087.34	388.32	1014.9	276.2	565.0800826	505.9527957	594.6343592	503.7905305	M4	2.028571429	2.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.252	134	0	0	NA	5qA1	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr4	155069021	155069021	T	G	ENSMUST00000103180.3	1	ENSMUSG00000029047	missense	I/M	182	Pex10	ENSMUST00000103180.3:c.546T>G	ENSMUSP00000099469.3:p.Ile182Met	H-2-Kb	9	6	6	VAWFYMHGT	VAWFYIHGT	SMMPMBEC	296.654	386.589	1.303	102	0.314	366.731	465.832	1.27	684.88	393.67	468.1	352.3	463.5643185	381.1623536	386.5894518	296.6538575	M4	-0.257142857	0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.31	102	7	2	0.285714286	4qE2	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr4	134853048	134853048	T	C	ENSMUST00000030628.14	1	ENSMUSG00000028826	missense	I/V	24	Maco1	ENSMUST00000030628.14:c.70A>G	ENSMUSP00000030628.7:p.Ile24Val	H-2-Kb	9	11	1	VYGSTFLYL	IYGSTFLYL	SMM	209.464	308.397	1.472	13	0.385	391.129	504.01	1.289	551.72	437.71	595.7	551.2	308.3968972	209.4642929	456.2995075	344.5482116	M4	1.028571429	1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.385	13	57	20	0.350877193	4qD3	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	2	1	sgMsh2	cell line
chr4	155659780	155659780	T	C	ENSMUST00000103176.9	1	ENSMUSG00000029060	missense	T/A	142	Mib2	ENSMUST00000103176.9:c.424A>G	ENSMUSP00000099465.3:p.Thr142Ala	H-2-Kb	9	4	8	TSHSRPVAL	TSHSRPVTL	SMM	363.17	385.576	1.062	23	0.217	425.623	511.583	1.202	629.39	485.44	938	926.7	385.5760057	363.1700284	393.7766863	365.8053055	M4	-0.042857143	-0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.239	23	24	4	0.166666667	4qE2	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr5	57721359	57721359	T	C	ENSMUST00000191837.5	1	ENSMUSG00000029108	missense	L/S	752	Pcdh7	ENSMUST00000191837.5:c.2255T>C	ENSMUSP00000142319.1:p.Leu752Ser	H-2-Kb	9	7	5	ISYTSLPPS	ISYTLLPPS	SMM	151.743	109.172	0.719	166	0.199	424.609	273.635	0.644	451.89	632.75	392.3	624.7	109.1716816	151.7434661	154.9708446	224.5173978	M4	-0.428571429	0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.213	166	47	0	0	5qC1	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	0.94218414	sgMsh2	cell line
chr5	31040436	31040436	T	C	ENSMUST00000114668.6	1	ENSMUSG00000006641	missense	I/V	310	Slc5a6	ENSMUST00000114668.6:c.928A>G	ENSMUSP00000110316.1:p.Ile310Val	H-2-Kb	9	11	1	VGLVMFAYY	IGLVMFAYY	SMM	176.242	259.484	1.472	61	0.262	453.049	578.617	1.277	846.6	671.54	1237.9	1273.8	259.483651	176.2422384	310.6347231	234.557865	M4	1.7	2.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.26	61	4	0	0	5qB1	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr6	42286884	42286884	TG	T	ENSMUST00000031894.12	1	ENSMUSG00000029862	FS	G/X	40	Clcn1	ENSMUST00000031894.12:c.122del	ENSMUSP00000031894.6:p.Gly41AlafsTer70	H-2-Db	9	65	0	TTILNVKTV	NA	NetMHCpan	370.5	NA	NA	56	0.107	457.664	NA	NA	NA	742.55	NA	370.5	NA	495.0168702	NA	420.3102682	M4	1.228571429	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.112	56	0	0	NA	6qB2.1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.495420768	sgMsh2	cell line
chr6	13193189	13193189	T	C	ENSMUST00000054530.6	1	ENSMUSG00000079679	missense	T/A	384	Vwde	ENSMUST00000054530.6:c.1150A>G	ENSMUSP00000058110.5:p.Thr384Ala	H-2-Kb	8	6	6	AVLYYAAV	AVLYYTAV	NetMHC	18.5	70.64	3.818	104	0.106	51.667	133.063	2.575	70.64	18.5	72.6	37	198.0341096	69.30107956	193.5263029	66.33458249	M4	1.885714286	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.121	104	0	0	NA	6qA1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.535231366	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	8	4	8	VLVSYTRL	VLVSYTRI	NetMHC	19.39	171.38	8.839	162	0.154	31.763	209.772	6.604	171.38	19.39	99.5	20.3	348.1288376	53.67103866	248.1646968	43.22549746	M4	0.642857143	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.163	162	0	0	NA	6qB2.1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.721014154	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	8	6	6	VSYTRLLV	VSYTRILV	NetMHCpan	35.2	39.9	1.134	162	0.154	94.957	84.621	0.891	32.04	39.69	39.9	35.2	129.3421274	150.2242346	135.1263357	158.7596015	M4	0.642857143	0.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.163	162	0	0	NA	6qB2.1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.721014154	sgMsh2	cell line
chr6	42400778	42400778	T	C	ENSMUST00000057398.3	NA	ENSMUSG00000046652	missense	S/P	181	Tas2r143	ENSMUST00000057398.3:c.541T>C	ENSMUSP00000057910.3:p.Ser181Pro	H-2-Kb	8	5	7	YYYLYHPV	YYYLYHSV	NetMHC	49.73	107.75	2.167	208	0.13	67.89	123.974	1.826	107.75	49.73	107.1	67.9	140.197413	67.8797134	145.794117	69.6209588	M4	-0.1	-0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.142	208	0	0	NA	6qB2.1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.62812276	sgMsh2	cell line
chr5	110277756	110277756	A	G	ENSMUST00000031472.11	1	ENSMUSG00000029499	missense	F/L	138	Pxmp2	ENSMUST00000031472.11:c.412T>C	ENSMUSP00000031472.5:p.Phe138Leu	H-2-Kb	8	8	4	VSVLVAKM	VSVFVAKM	NetMHC	116.68	141.33	1.211	88	0.261	223.541	229.414	1.026	141.33	116.68	47.9	183	323.3999884	288.2305431	317.4972734	264.0827294	M4	1.6	1.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.256	88	15	2	0.133333333	5qF	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr6	35270381	35270381	A	G	ENSMUST00000031868.4	1	ENSMUSG00000029843	missense	I/T	568	Slc13a4	ENSMUST00000031868.4:c.1703T>C	ENSMUSP00000031868.4:p.Ile568Thr	H-2-Kb	8	11	1	TVFSYGHC	IVFSYGHC	SMMPMBEC	126.398	45.787	0.362	143	0.224	145.752	48.403	0.332	38.66	171.24	51.8	148.7	51.01994663	142.8038776	45.7867692	126.3979412	M4	0.542857143	0.542857143	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.218	143	1	0	0	6qB1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.964301139	sgMsh2	cell line
chr6	30815960	30815960	A	G	ENSMUST00000048774.12	1	ENSMUSG00000025607	missense	V/A	480	Copg2	ENSMUST00000048774.12:c.1439T>C	ENSMUSP00000038368.6:p.Val480Ala	H-2-Kb	8	6	6	FIFNRAVL	FIFNRVVL	SMM	138.912	401.55	2.891	129	0.147	159.887	404.813	2.532	524.31	178.28	359.2	181.6	401.5503419	138.9120754	408.0750101	141.4946437	M4	1.3	1.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.157	129	124	23	0.185483871	6qA3.3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.694473756	sgMsh2	cell line
chr6	42286884	42286884	TG	T	ENSMUST00000031894.12	1	ENSMUSG00000029862	FS	G/X	40	Clcn1	ENSMUST00000031894.12:c.122del	ENSMUSP00000031894.6:p.Gly41AlafsTer70	H-2-Kb	8	28	0	TQHRYMAI	NA	NetMHC	259.42	NA	NA	56	0.107	338.138	NA	NA	NA	259.42	NA	273.8	NA	443.3431473	NA	402.476011	M4	-0.614285714	-0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.112	56	0	0	NA	6qB2.1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.495420768	sgMsh2	cell line
chr6	18405230	18405230	T	C	ENSMUST00000090601.11	1	ENSMUSG00000000416	missense	Y/C	1090	Cttnbp2	ENSMUST00000090601.11:c.3269A>G	ENSMUSP00000088089.5:p.Tyr1090Cys	H-2-Kb	8	7	5	SSVTCASM	SSVTYASM	NetMHC	276.55	6.31	0.023	302	0.189	362.299	24.523	0.068	6.31	276.55	15.8	475.5	35.70590129	399.7053856	33.24604589	324.8927349	M4	1.157142857	1.157142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.195	302	1	0	0	6qA2	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.862562945	sgMsh2	cell line
chr5	127609024	127609024	GA	G	ENSMUST00000031367.14	1	ENSMUSG00000029416	FS	F/X	198	Slc15a4	ENSMUST00000031367.14:c.593del	ENSMUSP00000031367.8:p.Phe198SerfsTer16	H-2-Kb	8	12	0	IGFTGALI	NA	NetMHCpan	136.9	NA	NA	53	0.245	275.62	NA	NA	NA	291.38	NA	136.9	NA	406.2000757	NA	259.8603386	M4	1.628571429	1.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.26	53	20	1	0.05	5qG1.2	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr5	143373198	143373198	CA	C	ENSMUST00000110733.8	1	ENSMUSG00000010825	FS	A/X	252	Grid2ip	ENSMUST00000110733.8:c.757del	ENSMUSP00000106361.2:p.Thr253ProfsTer66	H-2-Kb	8	51	0	LSCLAARL	NA	SMMPMBEC	117.69	NA	NA	35	0.257	231.458	NA	NA	NA	310.25	NA	703.1	NA	152.6651821	NA	117.6901185	M4	1.2	1.2	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.273	35	0	0	NA	5qG2	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr5	144173959	144173959	A	G	ENSMUST00000041804.7	1	ENSMUSG00000038970	missense	Y/C	499	Lmtk2	ENSMUST00000041804.7:c.1496A>G	ENSMUSP00000048238.7:p.Tyr499Cys	H-2-Kb	8	11	1	CSSMFFPV	YSSMFFPV	NetMHCpan	187.3	88.2	0.471	54	0.204	275.346	160.65	0.583	138.6	317.37	88.2	187.3	221.6868845	268.3737286	182.7006111	282.3189304	M4	1.214285714	1.214285714	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.225	54	43	11	0.255813953	5qG2	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	0.995264937	sgMsh2	cell line
chr5	123758488	123758488	A	G	ENSMUST00000031366.11	1	ENSMUSG00000029414	missense	N/D	138	Kntc1	ENSMUST00000031366.11:c.412A>G	ENSMUSP00000031366.7:p.Asn138Asp	H-2-Kb	8	5	7	SQRTYRDL	SQRTYRNL	SMM	239.74	37.217	0.155	127	0.402	352.064	42.914	0.122	25.66	412.56	218.3	1756.2	37.21688324	239.7397234	48.61160944	291.5680954	M4	-2.028571429	-2.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.411	127	34	10	0.294117647	5qF	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	2	1	sgMsh2	cell line
chr5	143373198	143373198	CA	C	ENSMUST00000110733.8	1	ENSMUSG00000010825	FS	A/X	252	Grid2ip	ENSMUST00000110733.8:c.757del	ENSMUSP00000106361.2:p.Thr253ProfsTer66	H-2-Kb	8	17	0	VALALGVL	NA	SMM	226.851	NA	NA	35	0.257	270.856	NA	NA	NA	422.56	NA	272.1	NA	226.8506354	NA	269.6124854	M4	2.685714286	2.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.273	35	0	0	NA	5qG2	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr6	38395159	38395159	A	G	ENSMUST00000162554.7	1	ENSMUSG00000056832	missense	N/S	228	Ttc26	ENSMUST00000162554.7:c.683A>G	ENSMUSP00000124369.1:p.Asn228Ser	H-2-Kb	8	8	4	KACSHFRL	KACNHFRL	SMMPMBEC	238.089	262.869	1.104	214	0.112	424.535	436.945	1.029	611.02	603.18	792.8	636.8	253.9451951	245.8895091	262.8693795	238.0893668	M4	0.342857143	0.342857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.124	214	7	0	0	6qB1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.548501565	sgMsh2	cell line
chr5	87694728	87694728	C	T	ENSMUST00000197422.4	1	ENSMUSG00000063157	missense	A/T	147	Csn2	ENSMUST00000197422.4:c.439G>A	ENSMUSP00000143341.1:p.Ala147Thr	H-2-Kb	8	9	3	SLTSLANL	SLASLANL	SMM	381.716	341.775	0.895	137	0.453	487.6	375.638	0.77	720.32	664.91	348.8	569	341.7747702	381.7156799	402.476011	406.2000757	M4	1.171428571	1.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.462	137	0	0	NA	5qE1	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	2	1	sgMsh2	cell line
chr6	30815960	30815960	A	G	ENSMUST00000048774.12	1	ENSMUSG00000025607	missense	V/A	480	Copg2	ENSMUST00000048774.12:c.1439T>C	ENSMUSP00000038368.6:p.Val480Ala	H-2-Kb	8	4	8	IRFIFNRA	IRFIFNRV	SMMPMBEC	232.135	48.277	0.208	129	0.147	482.306	47.673	0.099	40.71	683.59	149.1	1240.7	47.06954498	281.0217928	48.27696948	232.1346655	M4	-0.085714286	0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.157	129	124	23	0.185483871	6qA3.3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.694473756	sgMsh2	cell line
chr6	13193189	13193189	T	C	ENSMUST00000054530.6	1	ENSMUSG00000079679	missense	T/A	384	Vwde	ENSMUST00000054530.6:c.1150A>G	ENSMUSP00000058110.5:p.Thr384Ala	H-2-Kb	9	5	7	QAVLYYAAV	QAVLYYTAV	NetMHC	15.98	41.44	2.593	104	0.106	75.31	108.396	1.439	41.44	15.98	80.3	48.5	136.4928808	102.1198104	174.2809827	128.0117987	M4	1.885714286	1.885714286	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.121	104	0	0	NA	6qA1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.535231366	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	9	3	9	LVLVSYTRL	LVLVSYTRI	NetMHC	46.33	202.94	4.38	162	0.154	99.281	285.444	2.875	202.94	46.33	207.6	48.9	371.6293451	149.6614677	363.2871195	157.1267038	M4	0.642857143	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.163	162	0	0	NA	6qB2.1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.721014154	sgMsh2	cell line
chr6	41394716	41394716	A	G	ENSMUST00000049079.8	1	ENSMUSG00000058119	missense	N/S	32	Gm5771	ENSMUST00000049079.8:c.95A>G	ENSMUSP00000039684.7:p.Asn32Ser	H-2-Kb	9	11	1	SSVPYQVSL	NSVPYQVSL	NetMHCpan	55	427.2	7.767	481	0.187	192.657	1089.876	5.657	863.77	57.03	427.2	55	1486.312054	344.4371603	1315.982154	328.2842143	M4	0.714285714	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.181	481	0	0	NA	6qB1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.800635349	sgMsh2	cell line
chr5	101944143	101944143	T	A	ENSMUST00000053177.13	1	ENSMUSG00000043940	missense	K/N	443	Wdfy3	ENSMUST00000053177.13:c.1329A>T	ENSMUSP00000052607.7:p.Lys443Asn	H-2-Kb	9	8	4	VQNNYFEML	VQNKYFEML	NetMHC	62.66	107.77	1.72	141	0.241	165.336	170.625	1.032	107.77	62.66	106.6	107.7	272.3391013	275.4926395	233.4801695	222.9718309	M4	-0.471428571	-0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.246	141	36	7	0.194444444	5qE5	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr5	127609024	127609024	GA	G	ENSMUST00000031367.14	1	ENSMUSG00000029416	FS	F/X	198	Slc15a4	ENSMUST00000031367.14:c.593del	ENSMUSP00000031367.8:p.Phe198SerfsTer16	H-2-Kb	9	10	2	FSIGFTGAL	NA	NetMHC	67.05	NA	NA	53	0.245	176.099	NA	NA	NA	67.05	NA	115	NA	237.1974414	NA	246.7459312	M4	1.628571429	1.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.26	53	20	1	0.05	5qG1.2	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr6	42400778	42400778	T	C	ENSMUST00000057398.3	NA	ENSMUSG00000046652	missense	S/P	181	Tas2r143	ENSMUST00000057398.3:c.541T>C	ENSMUSP00000057910.3:p.Ser181Pro	H-2-Kb	9	5	7	YYYLYHPVL	YYYLYHSVL	NetMHCpan	51.9	51.9	1	208	0.13	75.206	66.576	0.885	66.74	105.71	51.9	51.9	67.46988967	76.57905451	66.41252616	73.83291242	M4	0.628571429	0.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.142	208	0	0	NA	6qB2.1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.62812276	sgMsh2	cell line
chr6	42400778	42400778	T	C	ENSMUST00000057398.3	NA	ENSMUSG00000046652	missense	S/P	181	Tas2r143	ENSMUST00000057398.3:c.541T>C	ENSMUSP00000057910.3:p.Ser181Pro	H-2-Kb	9	4	8	RYYYLYHPV	RYYYLYHSV	NetMHCpan	93.8	136.1	1.451	208	0.13	144.701	252.687	1.746	269.81	154.16	136.1	93.8	235.5645857	135.2415065	277.4917016	162.2743955	M4	-0.1	-0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.142	208	0	0	NA	6qB2.1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.62812276	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	9	4	8	VLVSYTRLL	VLVSYTRIL	NetMHCpan	118.1	254.3	2.153	162	0.154	338.726	712.479	2.103	683.46	204.18	254.3	118.1	741.4980274	473.271116	959.9530659	622.6586131	M4	0.642857143	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.163	162	0	0	NA	6qB2.1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.721014154	sgMsh2	cell line
chr5	137758482	137758482	TG	T	ENSMUST00000110985.1	2	ENSMUSG00000029723	FS	L/X	57	Tsc22d4	ENSMUST00000110985.1:c.177del	ENSMUSP00000106613.1:p.Pro60GlnfsTer18	H-2-Kb	9	22	0	VGWTKAFSL	NA	NetMHCpan	103.3	NA	NA	66	0.545	321.493	NA	NA	NA	216.16	NA	103.3	NA	472.1826226	NA	426.8251484	M4	0.3	0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.523	66	0	0	NA	5qG2	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	2	1	sgMsh2	cell line
chr5	101944090	101944090	T	C	ENSMUST00000053177.13	1	ENSMUSG00000043940	missense	K/R	461	Wdfy3	ENSMUST00000053177.13:c.1382A>G	ENSMUSP00000052607.7:p.Lys461Arg	H-2-Kb	9	5	7	LNYIPCREL	LNYIPCKEL	NetMHCpan	162.8	323.2	1.985	164	0.171	262.115	363.046	1.385	484.84	218.66	323.2	162.8	341.2793414	305.5694975	384.8132346	375.1889162	M4	-0.014285714	-0.014285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.185	164	49	11	0.224489796	5qE5	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	0.818328948	sgMsh2	cell line
chr5	147315169	147315169	T	C	ENSMUST00000100433.4	1	ENSMUSG00000075543	missense	S/G	158	Urad	ENSMUST00000100433.4:c.472A>G	ENSMUSP00000098000.3:p.Ser158Gly	H-2-Kb	9	10	2	IGHLRLTDL	ISHLRLTDL	NetMHC	322.75	98.24	0.304	82	0.146	388.562	137.299	0.353	98.24	322.75	151.5	451.1	159.261206	457.2039776	123.0977174	326.0243217	M4	-0.071428571	0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.167	82	0	0	NA	5qG3	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	0.738707753	sgMsh2	cell line
chr6	42286884	42286884	TG	T	ENSMUST00000031894.12	1	ENSMUSG00000029862	FS	G/X	40	Clcn1	ENSMUST00000031894.12:c.122del	ENSMUSP00000031894.6:p.Gly41AlafsTer70	H-2-Kb	9	60	0	TAWMRTTIL	NA	NetMHCpan	157.5	NA	NA	56	0.107	221.615	NA	NA	NA	328.86	NA	157.5	NA	251.2522734	NA	191.9773533	M4	0.485714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.112	56	0	0	NA	6qB2.1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.495420768	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	9	6	6	VSYTRLLVA	VSYTRILVA	NetMHCpan	129.9	163.6	1.259	162	0.154	176.155	270.535	1.536	712.71	415.25	163.6	129.9	323.6756285	203.287184	217.3952246	149.021867	M4	1.014285714	1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.163	162	0	0	NA	6qB2.1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.721014154	sgMsh2	cell line
chr6	57600007	57600007	T	C	ENSMUST00000031817.9	1	ENSMUSG00000029798	missense	L/P	235	Herc6	ENSMUST00000031817.9:c.704T>C	ENSMUSP00000031817.8:p.Leu235Pro	H-2-Db	9	6	6	GALKNPSVI	GALKNLSVI	NetMHC	13.46	7.99	0.594	160	0.131	47.099	27.26	0.579	7.99	13.46	16.8	37.5	48.2636319	70.24574131	37.71985373	56.6982951	M4	0.385714286	0.385714286	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.157	160	13	0	0	6qB3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.694473756	sgMsh2	cell line
chr6	107567567	107567567	A	G	ENSMUST00000049285.9	1	ENSMUSG00000034648	missense	N/D	109	Lrrn1	ENSMUST00000049285.9:c.325A>G	ENSMUSP00000037096.8:p.Asn109Asp	H-2-Db	9	4	8	FSQNNFTDI	FSQNNFTNI	NetMHC	98.08	74.23	0.757	203	0.148	115.299	90.521	0.785	74.23	98.08	73.3	114.3	106.8119884	136.3389673	112.3492041	116.2973985	M4	-1.057142857	-0.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.153	203	0	0	NA	6qE1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.676780157	sgMsh2	cell line
chr6	120481057	120481057	C	A	ENSMUST00000002976.4	1	ENSMUSG00000002897	missense	H/N	390	Il17ra	ENSMUST00000002976.4:c.1168C>A	ENSMUSP00000002976.3:p.His390Asn	H-2-Db	9	7	5	YSADNPLYV	YSADHPLYV	NetMHCpan	114.4	2660.3	23.254	102	0.186	283.253	6911.933	24.402	13345.04	242.45	2660.3	114.4	6880.500013	324.05595	6943.365065	416.4568405	M4	-0.014285714	-0.014285714	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.187	102	19	2	0.105263158	6qF1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.827175747	sgMsh2	cell line
chr6	112310674	112310674	C	T	ENSMUST00000032376.5	1	ENSMUSG00000057604	missense	T/I	107	Lmcd1	ENSMUST00000032376.5:c.320C>T	ENSMUSP00000032376.5:p.Thr107Ile	H-2-Db	9	3	9	MIMTNPIAI	MIMTNPIAT	NetMHCpan	132.8	6713.1	50.55	102	0.137	312.896	6508.578	20.801	15999.54	278.6	6713.1	132.8	6304.055094	440.1695544	3536.470177	347.1922322	M4	0.985714286	1	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.157	102	0	0	NA	6qE3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.694473756	sgMsh2	cell line
chr6	114302629	114302629	A	G	ENSMUST00000032454.7	1	ENSMUSG00000030310	missense	K/R	123	Slc6a1	ENSMUST00000032454.7:c.368A>G	ENSMUSP00000032454.5:p.Lys123Arg	H-2-Kb	8	6	6	LAPMFRGV	LAPMFKGV	NetMHC	85.05	307.58	3.616	130	0.208	326.028	633.35	1.943	307.58	85.05	408.2	184.6	1126.522836	545.4312289	858.499408	467.4552051	M4	0.6	0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.203	130	0	0	NA	6qE3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.897950143	sgMsh2	cell line
chr6	116702006	116702006	GC	G	ENSMUST00000056623.12	1	ENSMUSG00000048108	FS	G/X	36	Tmem72	ENSMUST00000056623.12:c.108del	ENSMUSP00000057942.6:p.Arg37GlyfsTer77	H-2-Kb	8	80	0	STLSWSGM	NA	NetMHC	165.56	NA	NA	80	0.087	251.323	NA	NA	NA	165.56	NA	224.2	NA	308.8445912	NA	278.4453695	M4	0.3	0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.118	80	0	0	NA	6qE3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.521961167	sgMsh2	cell line
chr6	69283934	69283934	TA	T	ENSMUST00000103349.1	NA	ENSMUSG00000076548	FS	Y/X	70	Igkv4-69	ENSMUST00000103349.1:c.208del	ENSMUSP00000100150.1:p.Tyr70MetfsTer26	H-2-Kb	8	25	0	VAVGLGPL	NA	NetMHC	277.12	NA	NA	450	0.162	319.498	NA	NA	NA	277.12	NA	307.3	NA	344.9371732	NA	331.6958211	M4	1.6	1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1622	450	0	0	NA	6qC1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.717475434	sgMsh2	cell line
chr6	90305116	90305116	A	G	ENSMUST00000054799.8	1	ENSMUSG00000049694	missense	Y/C	85	BC048671	ENSMUST00000054799.8:c.254A>G	ENSMUSP00000058483.2:p.Tyr85Cys	H-2-Kb	8	4	8	VAWPFSFC	VAWPFSFY	NetMHCpan	153.1	900.6	5.882	129	0.14	188.892	714.973	3.785	1434.71	338.59	900.6	153.1	529.3464441	165.0973111	373.0267702	212.686537	M4	0.942857143	1.185714286	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.135	129	0	0	NA	6qD1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.597158962	sgMsh2	cell line
chr6	118776550	118776550	TA	T	ENSMUST00000112793.9	1	ENSMUSG00000051331	FS	F/X	208	Cacna1c	ENSMUST00000112793.9:c.624del	ENSMUSP00000108413.4:p.Phe208LeufsTer5	H-2-Kb	8	4	8	IIVVVGLL	IIVVVGLF	SMMPMBEC	306.719	3852.477	12.56	65	0.138	338.036	3691.713	10.921	3530.95	350.43	3260.2	600.6	5293.464441	325.64169	3852.476516	306.71852	M4	3.471428571	3.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.158	65	0	0	NA	6qF1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.698897156	sgMsh2	cell line
chr6	81944479	81944479	C	A	ENSMUST00000043195.10	1	ENSMUSG00000035125	missense	P/T	489	Gcfc2	ENSMUST00000043195.10:c.1465C>A	ENSMUSP00000035644.4:p.Pro489Thr	H-2-Kb	8	10	2	STLIRVQL	SPLIRVQL	NetMHCpan	395.8	5699.7	14.4	171	0.053	445.242	3874.817	8.703	6999.37	431.56	5699.7	395.8	2049.934573	512.5544401	1975.786438	458.9231861	M4	1.085714286	1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.04	171	28	3	0.107142857	6qC3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.176935989	sgMsh2	cell line
chr6	72515320	72515320	A	G	ENSMUST00000162561.8	1	ENSMUSG00000052631	missense	V/A	181	Sh2d6	ENSMUST00000162561.8:c.542T>C	ENSMUSP00000124673.2:p.Val181Ala	H-2-Kb	8	5	7	QPFTLAAL	QPFTLAVL	SMM	136.691	321.914	2.355	60	0.167	392.013	1659.23	4.233	2868.95	584.16	4165.5	2841.1	321.9141004	136.691025	449.5106648	199.8664966	M4	1.671428571	1.671428571	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.173	60	0	0	NA	6qC1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.765248151	sgMsh2	cell line
chr6	118511612	118511612	GT	G	ENSMUST00000112830.2	5	ENSMUSG00000007827	FS	N/X	1362	Ankrd26	ENSMUST00000112830.2:c.4085del	ENSMUSP00000108449.1:p.Asn1362ThrfsTer13	H-2-Kb	9	12	0	ITLKWISQL	NA	NetMHCpan	44	NA	NA	82	0.098	105.672	NA	NA	NA	48.32	NA	44	NA	235.5645857	NA	163.0234201	M4	0.428571429	0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.114	82	29	0	0	6qF1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.504267568	sgMsh2	cell line
chr6	120481057	120481057	C	A	ENSMUST00000002976.4	1	ENSMUSG00000002897	missense	H/N	390	Il17ra	ENSMUST00000002976.4:c.1168C>A	ENSMUSP00000002976.3:p.His390Asn	H-2-Kb	9	5	7	IVYSADNPL	IVYSADHPL	NetMHC	64.45	94.23	1.462	102	0.186	101.023	110.368	1.093	94.23	64.45	91.8	119.8	126.5056726	82.24509375	194.2003463	135.2851103	M4	-0.728571429	0.2	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.187	102	19	2	0.105263158	6qF1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.827175747	sgMsh2	cell line
chr6	81944479	81944479	C	A	ENSMUST00000043195.10	1	ENSMUSG00000035125	missense	P/T	489	Gcfc2	ENSMUST00000043195.10:c.1465C>A	ENSMUSP00000035644.4:p.Pro489Thr	H-2-Kb	9	10	2	STLIRVQLL	SPLIRVQLL	NetMHC	122.53	2799.31	22.846	171	0.053	264.176	2295.473	8.689	2799.31	122.53	3865.8	257.8	1791.059444	297.9270937	1791.636906	270.5515336	M4	1.728571429	1.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.04	171	28	3	0.107142857	6qC3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.176935989	sgMsh2	cell line
chr6	108399280	108399280	C	T	ENSMUST00000032192.8	1	ENSMUSG00000030102	missense	R/W	1235	Itpr1	ENSMUST00000032192.8:c.3703C>T	ENSMUSP00000032192.6:p.Arg1235Trp	H-2-Kb	9	9	3	IMWLAHEFL	IMRLAHEFL	NetMHCpan	173.3	364.8	2.105	115	0.165	275.443	622.207	2.259	738.74	227.21	364.8	173.3	566.3827268	323.6756285	678.0317017	326.7758854	M4	0.657142857	0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.173	115	17	1	0.058823529	6qE1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.765248151	sgMsh2	cell line
chr6	108380923	108380923	A	T	ENSMUST00000032192.8	1	ENSMUSG00000030102	missense	K/M	521	Itpr1	ENSMUST00000032192.8:c.1562A>T	ENSMUSP00000032192.6:p.Lys521Met	H-2-Kb	9	9	3	IFMLLQAPF	IFKLLQAPF	NetMHC	243.96	1098.72	4.504	101	0.178	381.453	1088.97	2.855	1098.72	243.96	1897.8	649.4	1079.220037	368.2222268	940.2644145	394.6844353	M4	1.285714286	2.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.18	101	22	2	0.090909091	6qE1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.796211949	sgMsh2	cell line
chr6	57258876	57258876	T	C	ENSMUST00000228297.1	NA	ENSMUSG00000115199	missense	V/A	243	Vmn1r15	ENSMUST00000228297.1:c.728T>C	ENSMUSP00000154252.1:p.Val243Ala	H-2-Kb	9	5	7	FVVMYWADF	FVVMYWVDF	NetMHC	306.14	761.72	2.488	271	0.17	379.005	706.007	1.863	761.72	306.14	3331.3	836.6	650.2943789	450.9309038	416.1500968	307.0789168	M4	0.714285714	1.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.185	271	0	0	NA	6qB3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.818328948	sgMsh2	cell line
chr6	113578387	113578387	T	A	ENSMUST00000036340.11	1	ENSMUSG00000034023	missense	F/Y	1119	Fancd2	ENSMUST00000036340.11:c.3356T>A	ENSMUSP00000045667.5:p.Phe1119Tyr	H-2-Kb	9	3	9	QSFSYLQNY	QSFSYLQNF	SMM	108.67	62.389	0.574	197	0.188	297.381	61.045	0.205	32.08	374.85	59.7	1857.1	62.38928378	108.6700833	111.2371876	219.9125427	M4	-0.542857143	-0.471428571	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.188	197	59	11	0.186440678	6qE3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.831599147	sgMsh2	cell line
chr6	57258876	57258876	T	C	ENSMUST00000228297.1	NA	ENSMUSG00000115199	missense	V/A	243	Vmn1r15	ENSMUST00000228297.1:c.728T>C	ENSMUSP00000154252.1:p.Val243Ala	H-2-Kb	9	7	5	VMYWADFII	VMYWVDFII	SMM	154.565	218.328	1.413	271	0.17	312.379	430.03	1.377	602.28	395.01	1029	537.3	218.3282833	154.5645878	257.7804634	229.7470798	M4	1.128571429	1.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.185	271	0	0	NA	6qB3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.818328948	sgMsh2	cell line
chr7	26611187	26611187	T	C	ENSMUST00000228367.1	NA	ENSMUSG00000091924	missense	M/V	298	Vmn1r185	ENSMUST00000228367.1:c.892A>G	ENSMUSP00000154816.1:p.Met298Val	H-2-Db	9	8	4	YSLVSRFNL	YSLMSRFNL	NetMHC	136.82	215.91	1.578	165	0.182	299.155	452.516	1.513	215.91	136.82	303	280.9	602.0325877	317.4095578	657.007005	372.8807814	M4	0.828571429	0.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.193	165	0	0	NA	7qA3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.853716146	sgMsh2	cell line
chr6	132755481	132755481	T	C	ENSMUST00000076150.2	NA	ENSMUSG00000060412	missense	V/A	251	Tas2r124	ENSMUST00000076150.2:c.752T>C	ENSMUSP00000075509.2:p.Val251Ala	H-2-Db	9	11	1	AAQKNQSEL	VAQKNQSEL	SMM	100.605	129.009	1.282	153	0.17	119.155	162.062	1.36	282.34	237.01	187.8	133.7	129.0089974	100.6051007	136.3232716	104.6092287	M4	-2.128571429	-1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.181	153	0	0	NA	6qG1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.800635349	sgMsh2	cell line
chr7	25272796	25272796	A	G	ENSMUST00000169266.7	1	ENSMUSG00000005442	missense	I/V	651	Cic	ENSMUST00000169266.7:c.1951A>G	ENSMUSP00000132351.1:p.Ile651Val	H-2-Db	10	2	10	FSPINASPVV	FSPINASPVI	NetMHC	14.9	8.41	0.564	54	0.148	465.206	229.143	0.493	8.41	14.9	34.4	92.4	423.8869047	838.0115415	542.8376978	1013.141255	M4	1.257142857	1.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.174	54	41	12	0.292682927	7qA3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.769671551	sgMsh2	cell line
chr7	19643130	19643130	A	C	ENSMUST00000055242.10	1	ENSMUSG00000002981	missense	F/V	170	Clptm1	ENSMUST00000055242.10:c.508T>G	ENSMUSP00000051293.9:p.Phe170Val	H-2-Kb	8	4	8	SIYIHVYV	SIYIHVYF	NetMHC	15.47	62.57	4.045	110	0.236	41.881	121.629	2.904	62.57	15.47	80.8	57.4	162.4575876	35.70590129	166.6249377	48.05515695	M4	1.657142857	1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.237	110	208	42	0.201923077	7qA3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr6	134451069	134451069	T	C	ENSMUST00000032322.14	1	ENSMUSG00000030201	missense	Y/C	1520	Lrp6	ENSMUST00000032322.14:c.4559A>G	ENSMUSP00000032322.8:p.Tyr1520Cys	H-2-Kb	8	4	8	RSYSYRPC	RSYSYRPY	NetMHC	22.95	107.06	4.665	86	0.198	38.31	109.727	2.864	107.06	22.95	418.8	63.3	112.3931906	35.05419514	72.90209351	41.56616909	M4	-1.114285714	-1.114285714	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.188	86	80	7	0.0875	6qG1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.831599147	sgMsh2	cell line
chr7	28320255	28320255	A	G	ENSMUST00000209141.1	1	ENSMUSG00000003435	missense	F/L	497	Supt5	ENSMUST00000209141.1:c.1489T>C	ENSMUSP00000147164.1:p.Phe497Leu	H-2-Kb	8	11	1	LVILFSDL	FVILFSDL	NetMHCpan	33.8	63.7	1.885	105	0.276	68.106	75.272	1.105	40.58	34.18	63.7	33.8	93.70008827	130.2386842	86.84403626	102.0328459	M4	2.114285714	2.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.273	105	150	38	0.253333333	7qA3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr7	6461136	6461136	T	C	ENSMUST00000214301.2	5	ENSMUSG00000048620	missense	V/A	209	Olfr1336	ENSMUST00000214301.2:c.626T>C	ENSMUSP00000150162.1:p.Val209Ala	H-2-Kb	8	10	2	IAILWGSL	IVILWGSL	NetMHCpan	26.7	38.1	1.427	202	0.243	48.129	52.985	1.101	49.64	35.34	38.1	26.7	82.36448742	81.04757034	56.33003227	60.91720937	M4	1.685714286	1.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.245	202	0	0	NA	7qA1	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr6	123336368	123336368	T	C	ENSMUST00000073948.6	5	ENSMUSG00000091260	missense	I/T	799	Vmn2r19	ENSMUST00000073948.6:c.2396T>C	ENSMUSP00000073604.6:p.Ile799Thr	H-2-Kb	8	11	1	TSFVPTYL	ISFVPTYL	NetMHC	37.63	10.14	0.269	465	0.159	54.77	18.207	0.332	10.14	37.63	14.5	48.2	21.91492557	61.33946729	22.47708563	62.04974485	M4	0.914285714	0.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.163	465	0	0	NA	6qF2	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.721014154	sgMsh2	cell line
chr6	141532679	141532679	A	G	ENSMUST00000032362.11	1	ENSMUSG00000030235	missense	K/R	56	Slco1c1	ENSMUST00000032362.11:c.167A>G	ENSMUSP00000032362.9:p.Lys56Arg	H-2-Kb	8	4	8	LSFVYFAR	LSFVYFAK	NetMHC	71.6	273.33	3.817	147	0.129	97.337	165.283	1.698	273.33	71.6	241.7	126.8	88.86689373	86.84403626	56.4598864	107.830098	M4	0.714285714	1.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.127	147	0	0	NA	6qG2	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.561771764	sgMsh2	cell line
chr6	141532679	141532679	A	G	ENSMUST00000032362.11	1	ENSMUSG00000030235	missense	K/R	56	Slco1c1	ENSMUST00000032362.11:c.167A>G	ENSMUSP00000032362.9:p.Lys56Arg	H-2-Kb	8	5	7	SFVYFARA	SFVYFAKA	NetMHC	104.42	421.4	4.036	147	0.129	172.62	538.576	3.12	421.4	104.42	215.7	105.5	804.8964279	281.6696149	655.752568	239.7397234	M4	1.085714286	1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.127	147	0	0	NA	6qG2	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.561771764	sgMsh2	cell line
chr6	141532679	141532679	A	G	ENSMUST00000032362.11	1	ENSMUSG00000030235	missense	K/R	56	Slco1c1	ENSMUST00000032362.11:c.167A>G	ENSMUSP00000032362.9:p.Lys56Arg	H-2-Kb	8	6	6	FVYFARAL	FVYFAKAL	NetMHCpan	53.9	100.9	1.872	147	0.129	100.957	211.274	2.093	281	106.91	100.9	53.9	196.218522	95.00358634	226.3288934	123.2366829	M4	1.228571429	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.127	147	0	0	NA	6qG2	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.561771764	sgMsh2	cell line
chr6	124908510	124908510	CG	C	ENSMUST00000032217.1	1	ENSMUSG00000030124	FS	P/X	302	Lag3	ENSMUST00000032217.1:c.906del	ENSMUSP00000032217.1:p.Val303TrpfsTer45	H-2-Kb	8	16	0	VAILPFTL	NA	NetMHC	108.05	NA	NA	104	0.192	209.178	NA	NA	NA	108.05	NA	108.8	NA	309.5565516	NA	376.4783444	M4	2.057142857	2.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.195	104	1	0	0	6qF2	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.862562945	sgMsh2	cell line
chr7	4469203	4469203	GA	G	ENSMUST00000163893.7	1	ENSMUSG00000006154	FS	R/X	22	Eps8l1	ENSMUST00000163893.7:c.69del	ENSMUSP00000125840.1:p.Lys23AsnfsTer56	H-2-Kb	8	6	7	SIYEQRNV	SIYEQRKR	SMM	80.305	2021.808	25.177	151	0.185	140.518	10629.403	75.645	16431.11	121.91	19443.2	292.4	2021.808416	80.30452175	4827.696948	159.1255801	M4	-1.085714286	-1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.182	151	0	0	NA	7qA1	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.805058749	sgMsh2	cell line
chr6	134451076	134451076	T	C	ENSMUST00000032322.14	1	ENSMUSG00000030201	missense	R/G	1518	Lrp6	ENSMUST00000032322.14:c.4552A>G	ENSMUSP00000032322.8:p.Arg1518Gly	H-2-Kb	8	6	6	RSYSYGPY	RSYSYRPY	SMMPMBEC	72.902	72.902	1	81	0.198	122.156	109.727	0.898	107.06	123.88	418.8	436.7	112.3931906	120.4314735	72.90209351	72.90209351	M4	-1.071428571	-1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.19	81	81	7	0.086419753	6qG1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.840445947	sgMsh2	cell line
chr6	134451069	134451069	T	C	ENSMUST00000032322.14	1	ENSMUSG00000030201	missense	Y/C	1520	Lrp6	ENSMUST00000032322.14:c.4559A>G	ENSMUSP00000032322.8:p.Tyr1520Cys	H-2-Kb	8	11	1	CSYRHFAP	YSYRHFAP	NetMHC	134.9	77.72	0.576	86	0.198	195.012	134.543	0.69	77.72	134.9	80.4	161.6	188.68614	228.4230889	247.5939338	382.5956254	M4	-0.971428571	-0.385714286	TRUE	FALSE	TRUE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.188	86	80	7	0.0875	6qG1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.831599147	sgMsh2	cell line
chr6	131630478	131630478	A	C	ENSMUST00000067597.4	NA	ENSMUSG00000054497	missense	L/R	118	Tas2r130	ENSMUST00000067597.4:c.353T>G	ENSMUSP00000063954.4:p.Leu118Arg	H-2-Kb	8	5	7	ANFFHPRF	ANFFHPLF	NetMHCpan	53.6	54.9	1.024	161	0.168	288.698	560.736	1.942	259.01	191.26	54.9	53.6	862.4620612	386.1357391	915.6721386	387.0258739	M4	-0.628571429	-0.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.173	161	0	0	NA	6qF3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.765248151	sgMsh2	cell line
chr7	26611187	26611187	T	C	ENSMUST00000228367.1	NA	ENSMUSG00000091924	missense	M/V	298	Vmn1r185	ENSMUST00000228367.1:c.892A>G	ENSMUSP00000154816.1:p.Met298Val	H-2-Kb	8	4	8	FMRSYSLV	FMRSYSLM	NetMHC	238.94	166.52	0.697	165	0.182	450.026	344.108	0.765	166.52	238.94	202.1	466.8	486.1160944	433.2514252	558.1359543	516.1072977	M4	0.357142857	0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.193	165	0	0	NA	7qA3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.853716146	sgMsh2	cell line
chr6	123815817	123815817	T	C	ENSMUST00000075095.6	5	ENSMUSG00000072780	missense	M/T	701	Vmn2r24	ENSMUST00000075095.6:c.2102T>C	ENSMUSP00000074602.5:p.Met701Thr	H-2-Kb	8	6	6	QMWMVTRL	QMWMVMRL	NetMHC	249.67	165.69	0.664	562	0.153	456.149	439.641	0.964	165.69	249.67	358.4	310.1	520.8827797	666.4076901	533.0156983	602.1989584	M4	0.814285714	0.814285714	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.16	562	0	0	NA	6qF2	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.707743955	sgMsh2	cell line
chr7	6460824	6460824	T	C	ENSMUST00000214301.2	5	ENSMUSG00000048620	missense	L/P	105	Olfr1336	ENSMUST00000214301.2:c.314T>C	ENSMUSP00000150162.1:p.Leu105Pro	H-2-Kb	8	10	2	QPFFFISL	QLFFFISL	SMM	55.557	57.377	1.033	189	0.249	156.209	63.18	0.404	173.98	385.02	51.6	229.1	57.37728575	55.55715525	68.98267002	83.31822323	M4	2.042857143	2.042857143	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.236	189	0	0	NA	7qA1	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr7	10053061	10053061	C	T	ENSMUST00000074943.8	5	ENSMUSG00000094606	missense	G/R	40	Vmn2r50	ENSMUST00000074943.8:c.118G>A	ENSMUSP00000074476.6:p.Gly40Arg	H-2-Kb	8	5	7	IQDEYLRL	IQDEYLGL	SMM	150.918	253.945	1.683	106	0.472	317.133	564.557	1.78	860.74	479.12	1137.2	694.8	253.9451951	150.9176382	268.3737286	155.1457917	M4	-1.242857143	-1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.484	106	0	0	NA	7qA1	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	2	1	sgMsh2	cell line
chr6	125980155	125980155	A	G	ENSMUST00000160496.7	1	ENSMUSG00000038115	missense	K/R	629	Ano2	ENSMUST00000160496.7:c.1886A>G	ENSMUSP00000125303.1:p.Lys629Arg	H-2-Kb	8	6	6	KAFLLRFV	KAFLLKFV	NetMHCpan	272.4	547.6	2.01	260	0.115	351.17	682.716	1.944	1229.78	480.77	547.6	272.4	681.9303192	330.1718172	683.502331	372.1688324	M4	2.1	2.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.126	260	0	0	NA	6qF3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.557348365	sgMsh2	cell line
chr7	3616061	3616061	A	G	ENSMUST00000039507.14	1	ENSMUSG00000054594	missense	I/T	6	Oscar	ENSMUST00000039507.14:c.17T>C	ENSMUSP00000041306.7:p.Ile6Thr	H-2-Kb	8	5	2	LTLQLSTL	LILQLSTL	SMMPMBEC	322.656	336.31	1.042	44	0.25	338.443	363.993	1.075	436.42	536.56	390.9	339.8	337.0854446	337.0854446	336.3101696	322.6561891	M4	0.814285714	0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.268	44	0	0	NA	7qA1	chr7-3489139-3716454	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr6	142360906	142360906	G	T	ENSMUST00000041852.7	1	ENSMUSG00000041671	missense	K/N	386	Pyroxd1	ENSMUST00000041852.7:c.1158G>T	ENSMUSP00000036394.7:p.Lys386Asn	H-2-Kb	8	5	7	MGYYAANC	MGYYAAKC	NetMHCpan	200.1	550.6	2.752	185	0.189	337.295	1252.298	3.713	4234.22	695.92	550.6	200.1	1168.799454	290.2284617	1335.795574	384.3616066	M4	-0.057142857	-0.057142857	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.193	185	35	10	0.285714286	6qG2	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.853716146	sgMsh2	cell line
chr7	13028552	13028552	C	A	ENSMUST00000005705.7	1	ENSMUSG00000005566	missense	L/M	368	Trim28	ENSMUST00000005705.7:c.1102C>A	ENSMUSP00000005705.7:p.Leu368Met	H-2-Kb	8	9	3	KKMIYFQL	KKLIYFQL	SMMPMBEC	242.516	183.967	0.759	65	0.169	424.719	506.319	1.192	828.67	832.15	1033.4	533.4	183.9670312	316.0385059	183.9670312	242.5157786	M4	0.614285714	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.187	65	397	99	0.249370277	7qA1	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.827175747	sgMsh2	cell line
chr6	124908510	124908510	CG	C	ENSMUST00000032217.1	1	ENSMUSG00000030124	FS	P/X	302	Lag3	ENSMUST00000032217.1:c.906del	ENSMUSP00000032217.1:p.Val303TrpfsTer45	H-2-Kb	8	24	0	RLWVWHRL	NA	SMMPMBEC	207.367	NA	NA	104	0.192	336.204	NA	NA	NA	1111.14	NA	304.5	NA	367.908651	NA	207.3671696	M4	0.328571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.195	104	1	0	0	6qF2	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.862562945	sgMsh2	cell line
chr7	6460824	6460824	T	C	ENSMUST00000214301.2	5	ENSMUSG00000048620	missense	L/P	105	Olfr1336	ENSMUST00000214301.2:c.314T>C	ENSMUSP00000150162.1:p.Leu105Pro	H-2-Kb	8	8	4	MTQPFFFI	MTQLFFFI	NetMHCpan	253.7	421.1	1.66	189	0.249	343.05	297.188	0.866	625.66	1151.99	421.1	253.7	151.2655393	288.2305431	173.2766328	397.8689062	M4	1.014285714	1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.236	189	0	0	NA	7qA1	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr6	141532679	141532679	A	G	ENSMUST00000032362.11	1	ENSMUSG00000030235	missense	K/R	56	Slco1c1	ENSMUST00000032362.11:c.167A>G	ENSMUSP00000032362.9:p.Lys56Arg	H-2-Kb	9	4	8	LSFVYFARA	LSFVYFAKA	NetMHC	8.07	18.23	2.259	147	0.129	41.355	63.038	1.524	18.23	8.07	19.6	12.2	162.2220929	88.94263671	106.4755765	70.50988397	M4	1.085714286	1.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.127	147	0	0	NA	6qG2	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.561771764	sgMsh2	cell line
chr7	26611187	26611187	T	C	ENSMUST00000228367.1	NA	ENSMUSG00000091924	missense	M/V	298	Vmn1r185	ENSMUST00000228367.1:c.892A>G	ENSMUSP00000154816.1:p.Met298Val	H-2-Kb	9	11	1	VSRFNLAHL	MSRFNLAHL	NetMHC	34.25	88.62	2.587	165	0.182	91.603	217.283	2.372	88.62	34.25	130.4	64.6	304.1655332	118.6069123	327.5291816	126.5464598	M4	0.142857143	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.193	165	0	0	NA	7qA3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.853716146	sgMsh2	cell line
chr6	123787388	123787388	C	A	ENSMUST00000075095.6	5	ENSMUSG00000072780	missense	A/D	408	Vmn2r24	ENSMUST00000075095.6:c.1223C>A	ENSMUSP00000074602.5:p.Ala408Asp	H-2-Kb	9	4	8	SSYKVHADV	SSYKVHAAV	NetMHC	37.39	11.05	0.296	353	0.193	239.309	133.864	0.559	11.05	37.39	31	117	261.2823058	488.776143	236.7282022	361.6179668	M4	-0.242857143	-0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.183	353	0	0	NA	6qF2	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.809482149	sgMsh2	cell line
chr6	134520435	134520435	A	C	ENSMUST00000032322.14	1	ENSMUSG00000030201	missense	L/R	203	Lrp6	ENSMUST00000032322.14:c.608T>G	ENSMUSP00000032322.8:p.Leu203Arg	H-2-Kb	9	11	1	RNFIHKSNL	LNFIHKSNL	NetMHCpan	24.8	15.1	0.609	177	0.169	96.035	60.832	0.633	39.77	43.78	15.1	24.8	87.5205423	148.2893631	81.893607	152.4930322	M4	-0.042857143	-0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.174	177	101	13	0.128712871	6qG1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.769671551	sgMsh2	cell line
chr7	25630422	25630422	G	T	ENSMUST00000205808.1	5	ENSMUSG00000060376	missense	P/H	92	Bckdha	ENSMUST00000205808.1:c.275C>A	ENSMUSP00000146018.1:p.Pro92His	H-2-Kb	9	10	5	RSWKHLSRL	RSWKPLSRL	NetMHCpan	40.3	284.5	7.06	36	0.167	90.509	379.431	4.192	202.73	43.85	284.5	40.3	474.3621186	146.9298381	571.8077009	137.1671136	M4	-0.814285714	-0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.218	36	97	25	0.257731959	7qA3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.964301139	sgMsh2	cell line
chr7	6460824	6460824	T	C	ENSMUST00000214301.2	5	ENSMUSG00000048620	missense	L/P	105	Olfr1336	ENSMUST00000214301.2:c.314T>C	ENSMUSP00000150162.1:p.Leu105Pro	H-2-Kb	9	9	3	TQPFFFISL	TQLFFFISL	NetMHCpan	22.2	37.6	1.694	189	0.249	148.711	101.231	0.681	72.67	60.77	37.6	22.2	138.0733939	236.6519024	129.7926202	245.0473442	M4	2.042857143	2.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.236	189	0	0	NA	7qA1	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr7	6461136	6461136	T	C	ENSMUST00000214301.2	5	ENSMUSG00000048620	missense	V/A	209	Olfr1336	ENSMUST00000214301.2:c.626T>C	ENSMUSP00000150162.1:p.Val209Ala	H-2-Kb	9	10	2	IAILWGSLL	IVILWGSLL	NetMHC	79.58	110.35	1.387	202	0.243	134.3	179.951	1.34	110.35	79.58	151.4	83.2	208.5018919	185.4001153	225.0349638	194.6480243	M4	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.245	202	0	0	NA	7qA1	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr7	26611187	26611187	T	C	ENSMUST00000228367.1	NA	ENSMUSG00000091924	missense	M/V	298	Vmn1r185	ENSMUST00000228367.1:c.892A>G	ENSMUSP00000154816.1:p.Met298Val	H-2-Kb	9	3	9	VFMRSYSLV	VFMRSYSLM	NetMHC	86.79	66.95	0.771	165	0.182	195.423	101.978	0.522	66.95	86.79	103.7	265	100.2559138	171.4391481	132.8158787	219.4067579	M4	0.357142857	0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.193	165	0	0	NA	7qA3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.853716146	sgMsh2	cell line
chr6	124908510	124908510	CG	C	ENSMUST00000032217.1	1	ENSMUSG00000030124	FS	P/X	302	Lag3	ENSMUST00000032217.1:c.906del	ENSMUSP00000032217.1:p.Val303TrpfsTer45	H-2-Kb	9	17	0	AILPFTLRL	NA	NetMHCpan	45.3	NA	NA	104	0.192	185.425	NA	NA	NA	88.29	NA	45.3	NA	282.5595563	NA	326.7758854	M4	1.057142857	2.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.195	104	1	0	0	6qF2	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.862562945	sgMsh2	cell line
chr6	131630478	131630478	A	C	ENSMUST00000067597.4	NA	ENSMUSG00000054497	missense	L/R	118	Tas2r130	ENSMUST00000067597.4:c.353T>G	ENSMUSP00000063954.4:p.Leu118Arg	H-2-Kb	9	4	8	IANFFHPRF	IANFFHPLF	NetMHCpan	89.2	118.4	1.327	161	0.168	119.328	153.421	1.286	138.92	90.66	118.4	89.2	167.9229287	163.7231154	172.683165	147.9960077	M4	-0.628571429	0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.173	161	0	0	NA	6qF3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.765248151	sgMsh2	cell line
chr6	141532679	141532679	A	G	ENSMUST00000032362.11	1	ENSMUSG00000030235	missense	K/R	56	Slco1c1	ENSMUST00000032362.11:c.167A>G	ENSMUSP00000032362.9:p.Lys56Arg	H-2-Kb	9	5	7	SFVYFARAL	SFVYFAKAL	NetMHC	90.76	210.98	2.325	147	0.129	303.576	377.92	1.245	210.98	90.76	211.2	119.5	544.6405843	487.6519891	802.1396792	782.0778752	M4	1.228571429	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.127	147	0	0	NA	6qG2	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.561771764	sgMsh2	cell line
chr6	134451069	134451069	T	C	ENSMUST00000032322.14	1	ENSMUSG00000030201	missense	Y/C	1520	Lrp6	ENSMUST00000032322.14:c.4559A>G	ENSMUSP00000032322.8:p.Tyr1520Cys	H-2-Kb	9	11	1	CSYRHFAPP	YSYRHFAPP	SMM	43.965	47.985	1.091	86	0.198	101.949	75.581	0.741	74.91	111.8	101.8	153.6	47.9854973	43.96529586	76.25178243	92.09795777	M4	-1.085714286	-0.385714286	TRUE	FALSE	TRUE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.188	86	80	7	0.0875	6qG1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.831599147	sgMsh2	cell line
chr7	26611187	26611187	T	C	ENSMUST00000228367.1	NA	ENSMUSG00000091924	missense	M/V	298	Vmn1r185	ENSMUST00000228367.1:c.892A>G	ENSMUSP00000154816.1:p.Met298Val	H-2-Kb	9	6	6	RSYSLVSRF	RSYSLMSRF	NetMHCpan	141.6	108.4	0.766	165	0.182	189.696	134.173	0.707	111.27	145.45	108.4	141.6	157.0760603	233.9429705	198.2668013	302.8656361	M4	0.485714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.193	165	0	0	NA	7qA3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.853716146	sgMsh2	cell line
chr6	131630478	131630478	A	C	ENSMUST00000067597.4	NA	ENSMUSG00000054497	missense	L/R	118	Tas2r130	ENSMUST00000067597.4:c.353T>G	ENSMUSP00000063954.4:p.Leu118Arg	H-2-Kb	9	5	7	ANFFHPRFL	ANFFHPLFL	NetMHCpan	33.4	26.1	0.781	161	0.168	219.205	202.635	0.924	254.14	158.44	26.1	33.4	205.1681772	279.9690348	200.1013414	296.6538575	M4	0.414285714	0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.173	161	0	0	NA	6qF3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.765248151	sgMsh2	cell line
chr7	28894591	28894591	T	G	ENSMUST00000068045.13	1	ENSMUSG00000054808	missense	Q/H	830	Actn4	ENSMUST00000068045.13:c.2490A>C	ENSMUSP00000066068.7:p.Gln830His	H-2-Kb	9	8	4	VTFHAFIDF	VTFQAFIDF	NetMHCpan	146.4	153.5	1.048	71	0.211	189.821	227.721	1.2	272.3	241.28	153.5	146.4	235.0228021	195.0338527	220.4194935	184.6077801	M4	1.142857143	1.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.207	71	573	150	0.261780105	7qB1	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.915643742	sgMsh2	cell line
chr6	134484391	134484391	T	G	ENSMUST00000032322.14	1	ENSMUSG00000030201	missense	E/A	701	Lrp6	ENSMUST00000032322.14:c.2102A>C	ENSMUSP00000032322.8:p.Glu701Ala	H-2-Kb	9	4	8	SALEHVVAF	SALEHVVEF	NetMHC	346.5	552.55	1.595	188	0.176	444.167	549.223	1.237	552.55	346.5	572.2	399.4	545.8961105	515.3591605	539.8212792	488.9337312	M4	1.442857143	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.183	188	121	24	0.198347107	6qG1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.809482149	sgMsh2	cell line
chr6	123815817	123815817	T	C	ENSMUST00000075095.6	5	ENSMUSG00000072780	missense	M/T	701	Vmn2r24	ENSMUST00000075095.6:c.2102T>C	ENSMUSP00000074602.5:p.Met701Thr	H-2-Kb	9	8	4	WMVTRLSNV	WMVMRLSNV	SMMPMBEC	371.749	308.496	0.83	562	0.153	393.346	326.071	0.829	273.51	374.49	1055.2	1159.9	343.6449768	412.2019102	308.4963287	371.7491635	M4	0.385714286	0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.16	562	0	0	NA	6qF2	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.707743955	sgMsh2	cell line
chr6	137514729	137514729	T	G	ENSMUST00000058210.12	1	ENSMUSG00000015766	missense	K/Q	334	Eps8	ENSMUST00000058210.12:c.1000A>C	ENSMUSP00000052776.6:p.Lys334Gln	H-2-Kb	9	10	2	QQFKHGFNL	QKFKHGFNL	NetMHCpan	228.2	1667.3	7.306	41	0.22	490.17	1127.42	2.3	1187.63	398.09	1667.3	228.2	869.1805512	582.2506741	1067.21028	738.3291242	M4	-0.228571429	-0.228571429	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.205	41	311	69	0.221864952	6qG1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.906796942	sgMsh2	cell line
chr7	10169124	10169124	A	G	ENSMUST00000164918.2	5	ENSMUSG00000091930	missense	I/T	459	Vmn2r52	ENSMUST00000164918.2:c.1376T>C	ENSMUSP00000129352.1:p.Ile459Thr	H-2-Kb	9	4	8	VIMKQRVTL	VIMKQRVIL	NetMHCpan	379.7	920.2	2.423	174	0.253	472.225	755.37	1.6	1031.4	466.8	920.2	379.7	533.469998	477.6502397	590.540925	500.3224609	M4	-0.385714286	0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.24	174	0	0	NA	7qA1	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr6	131630478	131630478	A	C	ENSMUST00000067597.4	NA	ENSMUSG00000054497	missense	L/R	118	Tas2r130	ENSMUST00000067597.4:c.353T>G	ENSMUSP00000063954.4:p.Leu118Arg	H-2-Kb	10	4	8	IANFFHPRFL	IANFFHPLFL	NetMHCpan	94	86.2	0.917	161	0.168	481.421	614.879	1.277	539.74	269.64	86.2	94	925.4010757	949.1393959	690.0173327	693.202308	M4	0.414285714	0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.173	161	0	0	NA	6qF3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.765248151	sgMsh2	cell line
chr7	86616391	86616391	T	C	ENSMUST00000078588.1	NA	ENSMUSG00000062042	missense	T/A	85	Olfr294	ENSMUST00000078588.1:c.253A>G	ENSMUSP00000077662.1:p.Thr85Ala	H-2-Db	9	10	2	IAHNNSISI	ITHNNSISI	NetMHC	48.57	1098.4	22.615	192	0.276	83.312	784.711	9.419	1098.4	48.57	677	63.2	672.3880711	103.4236832	892.4214493	156.1600718	M4	-0.4	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.278	192	0	0	NA	7qD3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr7	103732555	103732555	C	T	ENSMUST00000098193.3	5	ENSMUSG00000096516	missense	L/F	210	Olfr628	ENSMUST00000098193.3:c.628C>T	ENSMUSP00000095795.1:p.Leu210Phe	H-2-Db	9	8	4	FSIFGLDII	FSILGLDII	NetMHC	113.22	76.81	0.678	450	0.122	280.953	184.204	0.656	76.81	113.22	86.2	122.8	298.2771604	445.2664776	282.2084413	439.1066356	M4	2.314285714	2.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.123	450	0	0	NA	7qE3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.544078165	sgMsh2	cell line
chr7	81101095	81101095	T	C	ENSMUST00000107348.1	1	ENSMUSG00000038763	missense	W/R	1538	Alpk3	ENSMUST00000107348.1:c.4612T>C	ENSMUSP00000102971.1:p.Trp1538Arg	H-2-Db	9	9	3	YQRTNGSFL	YQWTNGSFL	NetMHCpan	123.2	26.5	0.215	68	0.294	312.704	56.356	0.18	8.22	131.53	26.5	123.2	91.33137583	493.878363	86.21245256	572.2291797	M4	-0.471428571	-0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.301	68	0	0	NA	7qD3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr7	66784798	66784798	T	C	ENSMUST00000066475.10	1	ENSMUSG00000030510	missense	W/R	216	Cers3	ENSMUST00000066475.10:c.646T>C	ENSMUSP00000069238.8:p.Trp216Arg	H-2-Kb	8	8	4	SQYRYYIL	SQYWYYIL	NetMHC	4.27	6.01	1.407	280	0.254	11.074	15.356	1.387	6.01	4.27	10.4	7.4	20.3114066	14.74823333	31.82291802	20.73671696	M4	-0.514285714	-0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.268	280	0	0	NA	7qC	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr7	30715068	30715068	A	C	ENSMUST00000005692.13	5	ENSMUSG00000005553	missense	K/T	172	Atp4a	ENSMUST00000005692.13:c.515A>C	ENSMUSP00000005692.6:p.Lys172Thr	H-2-Kb	8	6	6	IIASFTNL	IIASFKNL	NetMHC	5.47	11.93	2.181	88	0.284	10.603	20.873	1.969	11.93	5.47	18.1	9.3	23.64503711	11.90529058	28.16696149	15.33698525	M4	1.128571429	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.295	88	0	0	NA	7qB1	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr7	99667112	99667112	T	C	ENSMUST00000107088.7	1	ENSMUSG00000030737	missense	T/A	404	Slco2b1	ENSMUST00000107088.7:c.1210A>G	ENSMUSP00000102703.1:p.Thr404Ala	H-2-Kb	8	10	2	IAASFANM	ITASFANM	NetMHC	5.86	5.92	1.01	59	0.186	17.404	13.8	0.793	5.92	5.86	10.9	9	16.70090478	25.80714726	19.75786438	31.24208431	M4	0.828571429	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.194	59	0	0	NA	7qE1	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.858139545	sgMsh2	cell line
chr7	108066532	108066532	T	C	ENSMUST00000071658.2	NA	ENSMUSG00000063120	missense	M/V	89	Olfr480	ENSMUST00000071658.2:c.265A>G	ENSMUSP00000071583.2:p.Met89Val	H-2-Kb	8	11	1	VYLFLSHL	MYLFLSHL	NetMHCpan	13.1	28.9	2.206	208	0.226	134.327	287.934	2.144	52.58	23.33	28.9	13.1	523.2870654	245.323979	556.8522772	262.8693795	M4	1.271428571	1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.238	208	0	0	NA	7qE3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr7	103732555	103732555	C	T	ENSMUST00000098193.3	5	ENSMUSG00000096516	missense	L/F	210	Olfr628	ENSMUST00000098193.3:c.628C>T	ENSMUSP00000095795.1:p.Leu210Phe	H-2-Kb	8	6	6	VAFSIFGL	VAFSILGL	NetMHCpan	12.1	17.7	1.463	450	0.122	44.539	74.275	1.668	44.14	27.17	17.7	12.1	120.1544888	73.91626265	104.4094962	61.9070344	M4	2.071428571	2.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.123	450	0	0	NA	7qE3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.544078165	sgMsh2	cell line
chr7	108031681	108031681	A	G	ENSMUST00000210173.2	3	ENSMUSG00000094426	missense	Y/H	221	Olfr478	ENSMUST00000210173.2:c.661T>C	ENSMUSP00000147713.1:p.Tyr221His	H-2-Kb	8	9	3	ISHIYILI	ISYIYILI	NetMHCpan	32.1	7	0.218	312	0.314	78.835	8.59	0.109	4.24	53.98	7	32.1	10.56185011	124.3769779	10.17981768	103.6907462	M4	1.714285714	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.306	312	0	0	NA	7qE3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr7	62419972	62419972	TC	T	ENSMUST00000094340.3	NA	ENSMUSG00000070527	FS	E/X	24	Mkrn3	ENSMUST00000094340.3:c.70del	ENSMUSP00000091898.3:p.Glu24ArgfsTer36	H-2-Kb	8	11	1	RVCLFPPL	NA	SMMPMBEC	44.951	NA	NA	12	0.333	58.684	NA	NA	NA	65.4	NA	82.2	NA	51.96847826	NA	44.95106648	M4	1.985714286	1.985714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.307	12	0	0	NA	7qC	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr7	104916819	104916819	A	G	ENSMUST00000217177.1	5	ENSMUSG00000056782	missense	L/P	159	Olfr667	ENSMUST00000217177.1:c.476T>C	ENSMUSP00000150340.1:p.Leu159Pro	H-2-Kb	8	9	3	FIPPFTFL	FILPFTFL	NetMHC	70.16	42.57	0.607	157	0.248	118.633	49.128	0.414	42.57	70.16	74.5	251.3	40.15503419	94.13258822	55.68522772	143.1330745	M4	1.428571429	1.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.247	157	0	0	NA	7qE3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr7	102927910	102927910	T	A	ENSMUST00000215782.2	5	ENSMUSG00000073963	missense	I/N	94	Olfr572	ENSMUST00000215782.2:c.281T>A	ENSMUSP00000149174.1:p.Ile94Asn	H-2-Kb	8	6	6	FNYKFNTF	FNYKFITF	NetMHCpan	50.8	48.2	0.949	169	0.231	130.321	119.91	0.92	86.45	77.52	48.2	50.8	158.0301673	183.1217795	153.3698525	187.8192059	M4	-1.042857143	-1.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.237	169	0	0	NA	7qE3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr7	127905762	127905762	T	C	ENSMUST00000071056.13	1	ENSMUSG00000030802	missense	I/T	130	Bckdk	ENSMUST00000071056.13:c.389T>C	ENSMUSP00000070345.7:p.Ile130Thr	H-2-Kb	8	10	2	YTRAFQKL	YIRAFQKL	NetMHCpan	121.7	137.9	1.133	183	0.235	139.122	142.352	1.023	95.73	131.44	137.9	121.7	146.8047136	146.8047136	188.2521739	180.6092545	M4	-0.6	-0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.236	183	204	50	0.245098039	7qF3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr7	84856666	84856666	T	C	ENSMUST00000211582.1	2	ENSMUSG00000070460	missense	L/S	101	Olfr291	ENSMUST00000211582.1:c.302T>C	ENSMUSP00000148266.1:p.Leu101Ser	H-2-Kb	8	10	2	ASQLYFLV	ALQLYFLV	NetMHC	147.53	3327.57	22.555	299	0.271	175.029	2029.316	11.594	3327.57	147.53	2934.7	203.6	1123.931906	163.9607892	1108.510982	186.0972691	M4	1.285714286	1.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.278	299	0	0	NA	7qD3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr7	105555462	105555462	AC	A	ENSMUST00000046983.9	1	ENSMUSG00000037049	FS	P/X	183	Smpd1	ENSMUST00000046983.9:c.551del	ENSMUSP00000042187.8:p.Pro184GlnfsTer72	H-2-Kb	8	47	0	VQIHFAAA	NA	SMMPMBEC	150.918	NA	NA	72	0.306	175.233	NA	NA	NA	165.65	NA	488.7	NA	184.8161845	NA	150.9176382	M4	0.857142857	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.313	72	34	1	0.029411765	7qE3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr7	108171874	108171874	G	A	ENSMUST00000072035.3	NA	ENSMUSG00000096068	missense	P/L	290	Olfr486	ENSMUST00000072035.3:c.869C>T	ENSMUSP00000071918.3:p.Pro290Leu	H-2-Kb	8	5	7	VIPVLNLL	VIPVLNPL	NetMHC	173.73	43.03	0.248	197	0.289	354.134	130.801	0.369	43.03	173.73	146.4	422.9	115.8083836	306.71852	145.794117	401.5503419	M4	2.142857143	2.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.284	197	0	0	NA	7qE3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr7	108031681	108031681	A	G	ENSMUST00000210173.2	3	ENSMUSG00000094426	missense	Y/H	221	Olfr478	ENSMUST00000210173.2:c.661T>C	ENSMUSP00000147713.1:p.Tyr221His	H-2-Kb	8	7	5	IAISHIYI	IAISYIYI	NetMHCpan	132.8	22.8	0.172	312	0.314	294.664	57.982	0.197	28.92	212.85	22.8	132.8	99.25216755	384.3616066	87.04423244	376.4783444	M4	1.428571429	1.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.306	312	0	0	NA	7qE3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr7	91940074	91940074	T	A	ENSMUST00000107196.9	1	ENSMUSG00000052572	missense	I/N	227	Dlg2	ENSMUST00000107196.9:c.680T>A	ENSMUSP00000102814.2:p.Ile227Asn	H-2-Kb	8	5	7	SIYVTKNI	SIYVTKII	NetMHC	242.01	2437.57	10.072	103	0.194	286.831	2390.198	8.333	2437.57	242.01	1637.8	259.8	2481.646968	364.5356443	2342.825811	313.8629122	M4	0.542857143	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.196	103	0	0	NA	7qE1	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.866986345	sgMsh2	cell line
chr7	105555462	105555462	AC	A	ENSMUST00000046983.9	1	ENSMUSG00000037049	FS	P/X	183	Smpd1	ENSMUST00000046983.9:c.551del	ENSMUSP00000042187.8:p.Pro184GlnfsTer72	H-2-Kb	8	38	0	STWRAQTL	NA	NetMHCpan	140.5	NA	NA	72	0.306	249.349	NA	NA	NA	259.51	NA	140.5	NA	239.1883374	NA	262.2647967	M4	-0.671428571	-0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.313	72	34	1	0.029411765	7qE3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr7	108714066	108714066	C	A	ENSMUST00000074730.3	NA	ENSMUSG00000056946	missense	L/M	238	Olfr512	ENSMUST00000074730.3:c.712C>A	ENSMUSP00000074291.4:p.Leu238Met	H-2-Kb	8	6	6	ILFTIMRM	ILFTILRM	NetMHCpan	74.1	112.6	1.52	329	0.237	290.124	605.685	2.088	729.71	264.21	112.6	74.1	758.1235717	462.1042896	481.6593553	316.0385059	M4	1.385714286	1.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.226	329	0	0	NA	7qE3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.999688336	sgMsh2	cell line
chr7	100503182	100503182	A	G	ENSMUST00000207405.1	1	ENSMUSG00000030708	missense	M/T	309	Dnajb13	ENSMUST00000207405.1:c.926T>C	ENSMUSP00000147019.1:p.Met309Thr	H-2-Kb	8	13	2	QTLRQALL	QMLRQALL	SMM	286.906	520.883	1.816	55	0.218	461.754	706.441	1.53	350.19	416.82	892	1408.6	520.8827797	286.906244	911.4650073	506.6872779	M4	0.642857143	0.642857143	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.235	55	5	0	0	7qE2	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr7	108066532	108066532	T	C	ENSMUST00000071658.2	NA	ENSMUSG00000063120	missense	M/V	89	Olfr480	ENSMUST00000071658.2:c.265A>G	ENSMUSP00000071583.2:p.Met89Val	H-2-Kb	8	8	4	HTPVYLFL	HTPMYLFL	NetMHCpan	245.7	219.6	0.894	208	0.226	262.002	292.515	1.116	407.26	463.94	219.6	245.7	316.0385059	266.5262568	268.9923939	257.4779247	M4	1.571428571	1.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.238	208	0	0	NA	7qE3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr7	62419972	62419972	TC	T	ENSMUST00000094340.3	NA	ENSMUSG00000070527	FS	E/X	24	Mkrn3	ENSMUST00000094340.3:c.70del	ENSMUSP00000091898.3:p.Glu24ArgfsTer36	H-2-Kb	8	19	0	LSLRLLEL	NA	NetMHCpan	293.7	NA	NA	12	0.333	477.609	NA	NA	NA	496.72	NA	293.7	NA	496.2951144	NA	458.9231861	M4	0.914285714	0.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.307	12	0	0	NA	7qC	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr7	108924890	108924890	A	T	ENSMUST00000055745.4	1	ENSMUSG00000049709	missense	M/K	461	Nlrp10	ENSMUST00000055745.4:c.1382T>A	ENSMUSP00000050252.3:p.Met461Lys	H-2-Kb	8	7	5	FFYAKSFL	FFYAMSFL	SMM	228.423	49.061	0.215	81	0.296	402.945	97.512	0.242	126.2	507.53	252.9	677.1	49.06140712	228.4230889	68.82401428	298.3595888	M4	0.742857143	0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.299	81	0	0	NA	7qE3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr7	118184633	118184633	A	G	ENSMUST00000032891.14	5	ENSMUSG00000030655	missense	I/T	1010	Smg1	ENSMUST00000032891.14:c.3029T>C	ENSMUSP00000032891.8:p.Ile1010Thr	H-2-Kb	8	10	2	VTRTFFYT	VIRTFFYT	SMMPMBEC	171.293	178.542	1.042	15	0.4	289.521	381.421	1.317	584.25	624.96	544.7	360.9	218.1423563	218.1423563	178.5418375	171.2931516	M4	-0.328571429	0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.411	15	60	14	0.233333333	7qF1	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	2	1	sgMsh2	cell line
chr7	86811337	86811337	G	A	ENSMUST00000164996.1	5	ENSMUSG00000090949	missense	V/I	624	Vmn2r77	ENSMUST00000164996.1:c.1870G>A	ENSMUSP00000129540.1:p.Val624Ile	H-2-Kb	8	6	6	ETLSYILL	ETLSYVLL	SMMPMBEC	299.737	258.071	0.861	237	0.253	438.719	380.319	0.867	864.89	988.22	444.6	532.5	316.0385059	344.9371732	258.0714726	299.7367541	M4	1.871428571	1.871428571	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.246	237	0	0	NA	7qD3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr7	86811337	86811337	G	A	ENSMUST00000164996.1	5	ENSMUSG00000090949	missense	V/I	624	Vmn2r77	ENSMUST00000164996.1:c.1870G>A	ENSMUSP00000129540.1:p.Val624Ile	H-2-Kb	9	8	4	LSYILLTSL	LSYVLLTSL	NetMHCpan	26.5	23.3	0.879	237	0.253	55.636	50.423	0.906	24.09	28.24	23.3	26.5	76.75558746	92.92017092	84.382036	83.03286055	M4	1.871428571	1.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.246	237	0	0	NA	7qD3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr7	108066532	108066532	T	C	ENSMUST00000071658.2	NA	ENSMUSG00000063120	missense	M/V	89	Olfr480	ENSMUST00000071658.2:c.265A>G	ENSMUSP00000071583.2:p.Met89Val	H-2-Kb	9	10	2	PVYLFLSHL	PMYLFLSHL	SMM	27.74	12.797	0.461	208	0.226	31.825	25.891	0.814	28.38	30.85	39.4	32.8	12.79705392	27.74022632	23.40183969	47.56089297	M4	1.271428571	1.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.238	208	0	0	NA	7qE3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr7	99667112	99667112	T	C	ENSMUST00000107088.7	1	ENSMUSG00000030737	missense	T/A	404	Slco2b1	ENSMUST00000107088.7:c.1210A>G	ENSMUSP00000102703.1:p.Thr404Ala	H-2-Kb	9	10	2	IAASFANML	ITASFANML	NetMHC	49.5	59.95	1.211	59	0.186	106.089	142.925	1.347	59.95	49.5	72	56.9	213.850367	155.2780255	358.3026333	277.4917016	M4	1.114285714	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.194	59	0	0	NA	7qE1	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.858139545	sgMsh2	cell line
chr7	99667112	99667112	T	C	ENSMUST00000107088.7	1	ENSMUSG00000030737	missense	T/A	404	Slco2b1	ENSMUST00000107088.7:c.1210A>G	ENSMUSP00000102703.1:p.Thr404Ala	H-2-Kb	9	9	3	SIAASFANM	SITASFANM	NetMHC	52.64	67.03	1.273	59	0.186	261.476	391.398	1.497	67.03	52.64	142.9	83.3	639.8968908	439.6529586	738.3291242	556.2243536	M4	0.828571429	1.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.194	59	0	0	NA	7qE1	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.858139545	sgMsh2	cell line
chr7	84856666	84856666	T	C	ENSMUST00000211582.1	2	ENSMUSG00000070460	missense	L/S	101	Olfr291	ENSMUST00000211582.1:c.302T>C	ENSMUSP00000148266.1:p.Leu101Ser	H-2-Kb	9	11	1	SQLYFLVAL	LQLYFLVAL	NetMHC	66.9	251.74	3.763	299	0.271	144.691	319.716	2.21	251.74	66.9	421.8	80.4	313.4079437	208.9825384	326.0243217	254.2435828	M4	2.7	2.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.278	299	0	0	NA	7qD3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr7	86230157	86230157	G	T	ENSMUST00000165771.1	5	ENSMUSG00000091239	missense	L/I	312	Vmn2r76	ENSMUST00000165771.1:c.934C>A	ENSMUSP00000127309.1:p.Leu312Ile	H-2-Kb	9	11	1	IFNSFHGTL	LFNSFHGTL	NetMHC	90.6	323.06	3.566	129	0.209	213.074	517.132	2.427	323.06	90.6	536.4	171.4	497.86317	254.7475407	565.2622723	289.2344371	M4	-0.285714286	0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.216	129	0	0	NA	7qD3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.955454339	sgMsh2	cell line
chr7	108031681	108031681	A	G	ENSMUST00000210173.2	3	ENSMUSG00000094426	missense	Y/H	221	Olfr478	ENSMUST00000210173.2:c.661T>C	ENSMUSP00000147713.1:p.Tyr221His	H-2-Kb	9	7	5	IAISHIYIL	IAISYIYIL	NetMHCpan	89.6	39.6	0.442	312	0.314	172.099	112.772	0.655	92.77	178.58	39.6	89.6	132.7730709	165.6189397	178.3405083	224.0010221	M4	1.714285714	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.306	312	0	0	NA	7qE3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr7	66784798	66784798	T	C	ENSMUST00000066475.10	1	ENSMUSG00000030510	missense	W/R	216	Cers3	ENSMUST00000066475.10:c.646T>C	ENSMUSP00000069238.8:p.Trp216Arg	H-2-Kb	9	8	4	SQYRYYILE	SQYWYYILE	SMM	92.493	70.325	0.76	280	0.254	160.502	195.895	1.221	314.3	217.43	396.3	364.7	70.32504197	92.49324152	77.49077422	103.5738214	M4	-0.514285714	-0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.268	280	0	0	NA	7qC	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr7	44860083	44860083	A	T	ENSMUST00000003044.13	1	ENSMUSG00000002963	missense	I/F	214	Pnkp	ENSMUST00000003044.13:c.640A>T	ENSMUSP00000003044.7:p.Ile214Phe	H-2-Kb	9	10	2	VFFTNQMGI	VIFTNQMGI	NetMHC	224.67	173.98	0.774	169	0.266	495.62	287.013	0.579	173.98	224.67	171	466.3	400.0460623	524.9404026	441.8247089	598.7561676	M4	0.157142857	0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.266	169	79	21	0.265822785	7qB3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr7	30715068	30715068	A	C	ENSMUST00000005692.13	5	ENSMUSG00000005553	missense	K/T	172	Atp4a	ENSMUST00000005692.13:c.515A>C	ENSMUSP00000005692.6:p.Lys172Thr	H-2-Kb	9	6	6	IIASFTNLV	IIASFKNLV	NetMHC	235.61	262.39	1.114	88	0.284	370.451	435.365	1.175	262.39	235.61	741.3	524.5	304.1655332	255.3347944	566.5653364	485.5679351	M4	1.085714286	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.295	88	0	0	NA	7qB1	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr7	104068260	104068260	T	G	ENSMUST00000213184.1	5	ENSMUSG00000110012	missense	K/T	257	Olfr644	ENSMUST00000213184.1:c.770A>C	ENSMUSP00000149070.1:p.Lys257Thr	H-2-Kb	9	6	6	IFYVPTVGV	IFYVPKVGV	NetMHC	256.22	304.24	1.187	158	0.272	428.01	503.566	1.177	304.24	256.22	991.5	701	405.6112574	340.4944207	601.5199005	515.5253194	M4	1.228571429	1.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.284	158	0	0	NA	7qE3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr7	104916819	104916819	A	G	ENSMUST00000217177.1	5	ENSMUSG00000056782	missense	L/P	159	Olfr667	ENSMUST00000217177.1:c.476T>C	ENSMUSP00000150340.1:p.Leu159Pro	H-2-Kb	9	5	7	RSVAFIPPF	RSVAFILPF	NetMHCpan	137.7	225.1	1.635	157	0.248	398.55	600.349	1.506	581.1	281.74	225.1	137.7	619.5979897	515.3591605	647.5152482	556.2243536	M4	1.842857143	1.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.247	157	0	0	NA	7qE3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr7	108924890	108924890	A	T	ENSMUST00000055745.4	1	ENSMUSG00000049709	missense	M/K	461	Nlrp10	ENSMUST00000055745.4:c.1382T>A	ENSMUSP00000050252.3:p.Met461Lys	H-2-Kb	9	7	5	FFYAKSFLV	FFYAMSFLV	SMM	287.813	306.98	1.067	81	0.296	389.599	554.649	1.424	537.49	303.59	2175	1218.5	306.9799422	287.8127307	571.8077009	475.6089297	M4	0.942857143	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.299	81	0	0	NA	7qE3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr7	104068260	104068260	T	G	ENSMUST00000213184.1	5	ENSMUSG00000110012	missense	K/T	257	Olfr644	ENSMUST00000213184.1:c.770A>C	ENSMUSP00000149070.1:p.Lys257Thr	H-2-Kb	9	3	9	AVLIFYVPT	AVLIFYVPK	SMMPMBEC	146.302	443.864	3.034	158	0.272	259.977	1408.126	5.416	2238.01	335.83	4724.6	975.8	578.2424886	184.1238299	443.8640791	146.3019114	M4	1.671428571	2.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.284	158	0	0	NA	7qE3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr7	55933103	55933103	G	A	ENSMUST00000119201.7	1	ENSMUSG00000030452	missense	A/V	298	Nipa2	ENSMUST00000119201.7:c.893C>T	ENSMUSP00000114020.1:p.Ala298Val	H-2-Kb	9	3	9	IVGIFLLHV	IVGIFLLHA	SMMPMBEC	293.934	1014.495	3.451	129	0.217	319.481	1799.346	5.632	2393.35	336.89	4122.3	831.1	1205.341196	302.0716724	1014.495208	293.9341186	M4	2.214285714	3.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.228	129	116	21	0.181034483	7qB5	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr7	108317521	108317521	T	C	ENSMUST00000214605.1	2	ENSMUSG00000094612	missense	V/A	209	Olfr491	ENSMUST00000214605.1:c.626T>C	ENSMUSP00000150694.1:p.Val209Ala	H-2-Kb	9	10	2	VATVFVISV	VVTVFVISV	NetMHC	342.27	467.62	1.366	310	0.239	395.11	553.012	1.4	467.62	342.27	735.6	356.6	487.6519891	433.6206938	618.3722614	534.872168	M4	2.628571429	3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.246	310	0	0	NA	7qE3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr7	104916819	104916819	A	G	ENSMUST00000217177.1	5	ENSMUSG00000056782	missense	L/P	159	Olfr667	ENSMUST00000217177.1:c.476T>C	ENSMUSP00000150340.1:p.Leu159Pro	H-2-Kb	9	7	5	VAFIPPFTF	VAFILPFTF	SMM	338.93	251.252	0.741	157	0.248	420.975	289.227	0.687	437.36	396.25	281.8	445.7	251.2522734	338.9299909	296.6538575	507.2826396	M4	1.285714286	1.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.247	157	0	0	NA	7qE3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr7	45897436	45897436	C	T	ENSMUST00000069772.15	1	ENSMUSG00000002781	missense	L/F	9	Tmem143	ENSMUST00000069772.15:c.25C>T	ENSMUSP00000070405.7:p.Leu9Phe	H-2-Kb	9	1	9	MTVARWLRF	MTVARWLRL	SMMPMBEC	346.937	200.563	0.578	34	0.235	447.198	172.436	0.386	144.31	476.98	90.6	447.6	264.9171047	446.7967444	200.5626226	346.9365057	M4	0.385714286	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.289	34	13	4	0.307692308	7qB3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr8	112733443	112733443	G	A	ENSMUST00000034225.6	1	ENSMUSG00000031772	missense	V/I	143	Cntnap4	ENSMUST00000034225.6:c.427G>A	ENSMUSP00000034225.6:p.Val143Ile	H-2-Db	9	3	9	SGNANADSI	SGNANADSV	NetMHC	30.65	89.53	2.921	70	0.286	89.901	211.709	2.355	89.53	30.65	154.5	66.4	268.9180789	113.4018136	286.7939596	115.2311776	M4	-0.457142857	-0.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.274	70	0	0	NA	8qE1	chr8-92830365-129138455	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr8	53599412	53599412	T	C	ENSMUST00000047768.10	1	ENSMUSG00000039396	missense	T/A	384	Neil3	ENSMUST00000047768.10:c.1150A>G	ENSMUSP00000041909.4:p.Thr384Ala	H-2-Db	9	11	1	AAFGNTTLV	TAFGNTTLV	NetMHCpan	49.8	91	1.827	175	0.28	83.455	163.124	1.955	166.45	70.39	91	49.8	178.4925113	96.52059712	159.7975071	99.90103784	M4	0.785714286	0.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.286	175	16	1	0.0625	8qB1.3	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr8	13576361	13576361	T	C	ENSMUST00000117551.3	1	ENSMUSG00000031453	missense	M/V	741	Rasa3	ENSMUST00000117551.3:c.2221A>G	ENSMUSP00000112998.2:p.Met741Val	H-2-Db	9	4	8	YSLFNLYVG	YSLFNLYMG	NetMHC	87.93	363.82	4.138	120	0.308	182.548	418.279	2.291	363.82	87.93	556	201.2	472.737441	298.2771604	313.0184957	163.896621	M4	1.342857143	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.315	120	77	12	0.155844156	8qA1.1	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr8	109551631	109551631	C	T	ENSMUST00000042601.8	1	ENSMUSG00000037993	missense	D/N	1138	Dhx38	ENSMUST00000042601.8:c.3412G>A	ENSMUSP00000047865.7:p.Asp1138Asn	H-2-Db	9	7	5	VTAVNGEWL	VTAVDGEWL	NetMHC	127.35	8821.39	69.269	78	0.179	384.136	9938.338	25.872	8821.39	127.35	6722.3	173.2	12723.89276	660.1156057	11055.28645	595.0726634	M4	0.214285714	0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.209	78	63	18	0.285714286	8qD3	chr8-92830365-129138455	4	2	2	0.99	4.379165722	NA	1	0.924490541	sgMsh2	cell line
chr8	112733443	112733443	G	A	ENSMUST00000034225.6	1	ENSMUSG00000031772	missense	V/I	143	Cntnap4	ENSMUST00000034225.6:c.427G>A	ENSMUSP00000034225.6:p.Val143Ile	H-2-Kb	8	9	3	DSIVYYRL	DSVVYYRL	NetMHC	42.65	105.06	2.463	70	0.286	52.343	101.814	1.945	105.06	42.65	264	129.3	97.66523514	51.13755976	98.56892043	53.5475987	M4	0.657142857	0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.274	70	0	0	NA	8qE1	chr8-92830365-129138455	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr8	56110553	56110553	A	G	ENSMUST00000000275.8	1	ENSMUSG00000038257	missense	K/R	361	Glra3	ENSMUST00000000275.8:c.1082A>G	ENSMUSP00000000275.7:p.Lys361Arg	H-2-Kb	8	6	6	VSRQHREL	VSRQHKEL	SMM	69.621	143.794	2.065	155	0.239	100.959	250.036	2.477	322.76	105.37	1502.7	872.9	143.7937467	69.6209588	177.3127641	96.54727043	M4	-2.314285714	-2.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.245	155	0	0	NA	8qB2	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr8	13781433	13781433	TA	T	ENSMUST00000043962.8	1	ENSMUSG00000038416	FS	L/X	555	Cdc16	ENSMUST00000043962.8:c.1670del	ENSMUSP00000047950.8:p.Asn557ThrfsTer14	H-2-Kb	8	13	1	TSFRLHGI	NA	NetMHCpan	62.1	NA	NA	101	0.228	150.262	NA	NA	NA	156.73	NA	62.1	NA	169.3323751	NA	143.7937467	M4	0.314285714	0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.235	101	368	63	0.171195652	8qA1.1	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr7	143781688	143781688	A	T	ENSMUST00000054048.9	1	ENSMUSG00000048965	missense	L/H	26	Mrgpre	ENSMUST00000054048.9:c.77T>A	ENSMUSP00000058000.8:p.Leu26His	H-2-Kb	8	7	5	TILSHTEL	TILSLTEL	SMM	254.531	564.599	2.218	59	0.102	270.59	569.599	2.105	574.6	263.48	405.1	277.7	564.598864	254.5305993	580.4168341	288.8949831	M4	0.557142857	0.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.119	59	7	0	0	7qF5	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.526384567	sgMsh2	cell line
chr8	105878842	105878842	T	C	ENSMUST00000008594.8	1	ENSMUSG00000008450	missense	F/S	103	Nutf2	ENSMUST00000008594.8:c.308T>C	ENSMUSP00000008594.7:p.Phe103Ser	H-2-Kb	8	5	7	MGFHQMSL	MGFHQMFL	NetMHCpan	61.8	73.9	1.196	119	0.218	150.906	134.413	0.891	345.7	271.66	73.9	61.8	105.6185011	124.0909187	163.2074578	177.7215122	M4	0.085714286	0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.231	119	2	0	0	8qD3	chr8-92830365-129138455	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr8	83725234	83725234	A	G	ENSMUST00000075843.12	1	ENSMUSG00000002885	missense	M/T	563	Adgre5	ENSMUST00000075843.12:c.1688T>C	ENSMUSP00000075240.6:p.Met563Thr	H-2-Kb	8	7	5	SSRTTVHL	SSRTMVHL	SMMPMBEC	310.27	134.196	0.433	107	0.28	344.132	130.589	0.379	73.79	367.09	280.6	1261.9	126.9813676	321.1737185	134.1961326	310.2701531	M4	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.286	107	146	36	0.246575342	8qC2	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr8	71634633	71634633	T	C	ENSMUST00000030170.14	5	ENSMUSG00000034799	missense	K/R	1490	Unc13a	ENSMUST00000030170.14:c.4469A>G	ENSMUSP00000030170.8:p.Lys1490Arg	H-2-Kb	8	8	4	VGLRKTFL	VGLKKTFL	SMMPMBEC	402.476	734.074	1.824	51	0.333	407.747	785.537	1.927	988.36	411.16	837	511.7	732.3859428	404.3337559	734.0742668	402.476011	M4	0.128571429	0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.326	51	0	0	NA	8qB3.3	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr7	140176434	140176434	T	A	ENSMUST00000055890.5	NA	ENSMUSG00000051051	missense	Y/N	111	Olfr523	ENSMUST00000055890.5:c.331T>A	ENSMUSP00000052678.5:p.Tyr111Asn	H-2-Kb	8	10	2	MNFVFSLG	MYFVFSLG	SMM	60.777	282.97	4.656	113	0.212	150.941	742.804	4.921	3267.38	503.91	1126.9	212.4	282.9697428	60.77710368	358.7071224	89.4828896	M4	1.271428571	1.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.229	113	0	0	NA	7qF4	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr7	141432693	141432693	T	A	ENSMUST00000019226.13	1	ENSMUSG00000019082	missense	D/V	88	Slc25a22	ENSMUST00000019226.13:c.263A>T	ENSMUSP00000019226.7:p.Asp88Val	H-2-Kb	9	9	3	ANVFFRHQL	ANDFFRHQL	NetMHCpan	41.7	531.7	12.751	78	0.192	200.697	664.207	3.31	733.78	115.47	531.7	41.7	741.4980274	350.0338139	594.6343592	285.9235978	M4	0.342857143	0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.222	78	14	2	0.142857143	7qF5	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.981994738	sgMsh2	cell line
chr8	109551631	109551631	C	T	ENSMUST00000042601.8	1	ENSMUSG00000037993	missense	D/N	1138	Dhx38	ENSMUST00000042601.8:c.3412G>A	ENSMUSP00000047865.7:p.Asp1138Asn	H-2-Kb	9	10	2	VNGEWLAEL	VDGEWLAEL	NetMHC	116.53	3630.39	31.154	78	0.179	130.917	2132.941	16.292	3630.39	116.53	5738.1	292.5	635.4918716	125.9244318	562.6651281	135.909558	M4	0.157142857	0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.209	78	63	18	0.285714286	8qD3	chr8-92830365-129138455	4	2	2	0.99	4.379165722	NA	1	0.924490541	sgMsh2	cell line
chr7	140176434	140176434	T	A	ENSMUST00000055890.5	NA	ENSMUSG00000051051	missense	Y/N	111	Olfr523	ENSMUST00000055890.5:c.331T>A	ENSMUSP00000052678.5:p.Tyr111Asn	H-2-Kb	9	8	4	TQMNFVFSL	TQMYFVFSL	NetMHCpan	54.3	50.5	0.93	113	0.212	363.925	320.472	0.881	177.38	122.16	50.5	54.3	463.5643185	662.384254	487.8092149	605.6894373	M4	1.6	1.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.229	113	0	0	NA	7qF4	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr8	105878842	105878842	T	C	ENSMUST00000008594.8	1	ENSMUSG00000008450	missense	F/S	103	Nutf2	ENSMUST00000008594.8:c.308T>C	ENSMUSP00000008594.7:p.Phe103Ser	H-2-Kb	9	4	8	IMGFHQMSL	IMGFHQMFL	SMMPMBEC	166.437	225.554	1.355	119	0.218	175.497	253.816	1.446	305.48	177.57	275.3	221.2	232.3325184	173.4243199	225.553723	166.4370463	M4	0.085714286	0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.231	119	2	0	0	8qD3	chr8-92830365-129138455	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr8	85009334	85009334	C	T	ENSMUST00000209421.1	1	ENSMUSG00000052819	missense	E/K	324	Best2	ENSMUST00000209421.1:c.970G>A	ENSMUSP00000147837.1:p.Glu324Lys	H-2-Kb	9	11	1	KMYDDLAML	EMYDDLAML	SMM	165.238	448.859	2.716	156	0.308	180.536	893.065	4.947	1337.27	195.78	1855.1	268.9	448.8590645	165.2380267	375.1889162	165.2913018	M4	0.428571429	0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.291	156	0	0	NA	8qC3	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr8	112733443	112733443	G	A	ENSMUST00000034225.6	1	ENSMUSG00000031772	missense	V/I	143	Cntnap4	ENSMUST00000034225.6:c.427G>A	ENSMUSP00000034225.6:p.Val143Ile	H-2-Kb	9	11	1	IVYYRLQPS	VVYYRLQPS	SMM	49.444	33.582	0.679	70	0.286	141.69	112.225	0.792	164.02	203.35	391.7	409.6	33.58226621	49.4435904	60.42963902	80.02948092	M4	-1.314285714	0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.274	70	0	0	NA	8qE1	chr8-92830365-129138455	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr8	105878842	105878842	T	C	ENSMUST00000008594.8	1	ENSMUSG00000008450	missense	F/S	103	Nutf2	ENSMUST00000008594.8:c.308T>C	ENSMUSP00000008594.7:p.Phe103Ser	H-2-Kb	9	5	7	MGFHQMSLL	MGFHQMFLL	NetMHCpan	61.9	85	1.373	119	0.218	289.966	372.137	1.283	284.96	204	85	61.9	459.3143352	375.9326101	492.3228579	387.4806325	M4	0.685714286	0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.231	119	2	0	0	8qD3	chr8-92830365-129138455	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr7	138229856	138229856	A	G	ENSMUST00000160436.1	5	ENSMUSG00000091002	missense	M/T	464	Tcerg1l	ENSMUST00000160436.1:c.1391T>C	ENSMUSP00000124476.1:p.Met464Thr	H-2-Kb	9	5	7	VTHFRDTLL	VTHFRDMLL	SMMPMBEC	144.295	160.048	1.109	42	0.19	193.254	171.84	0.889	177.68	224.66	340.6	468.5	166.0007308	161.8489924	160.0479073	144.2945739	M4	-0.214285714	-0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.205	42	0	0	NA	7qF4	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.906796942	sgMsh2	cell line
chr7	140176434	140176434	T	A	ENSMUST00000055890.5	NA	ENSMUSG00000051051	missense	Y/N	111	Olfr523	ENSMUST00000055890.5:c.331T>A	ENSMUSP00000052678.5:p.Tyr111Asn	H-2-Kb	9	10	2	MNFVFSLGC	MYFVFSLGC	NetMHCpan	260	1759.1	6.766	113	0.212	333.509	1085.74	3.256	1269.39	263.27	1759.1	260	709.7575157	403.747643	902.0902731	516.713728	M4	2.128571429	2.128571429	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.229	113	0	0	NA	7qF4	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr7	144515997	144515997	C	T	ENSMUST00000182226.7	1	ENSMUSG00000037519	missense	A/T	400	Ppfia1	ENSMUST00000182226.7:c.1198G>A	ENSMUSP00000138312.1:p.Ala400Thr	H-2-Kb	9	10	2	ATLSKSGPL	AALSKSGPL	NetMHC	270.96	221.83	0.819	55	0.418	340.628	257.207	0.755	221.83	270.96	524	511.7	220.3484501	303.4659719	292.583614	377.7896015	M4	0.014285714	0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.432	55	54	10	0.185185185	7qF5	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	2	1	sgMsh2	cell line
chr8	56110553	56110553	A	G	ENSMUST00000000275.8	1	ENSMUSG00000038257	missense	K/R	361	Glra3	ENSMUST00000000275.8:c.1082A>G	ENSMUSP00000000275.7:p.Lys361Arg	H-2-Kb	9	6	6	VSRQHRELL	VSRQHKELL	SMM	223.414	253.577	1.135	155	0.239	294.719	447.137	1.517	629.88	360.22	1230.8	842.1	253.577082	223.4138023	264.3930288	229.2186762	M4	-1.657142857	-1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.245	155	0	0	NA	8qB2	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr8	105178615	105178615	A	T	ENSMUST00000052209.8	1	ENSMUSG00000031885	missense	N/I	63	Cbfb	ENSMUST00000052209.8:c.188A>T	ENSMUSP00000059382.2:p.Asn63Ile	H-2-Kb	9	3	9	IAFVATGTI	IAFVATGTN	NetMHCpan	147.4	7924.2	53.76	118	0.246	476.809	5159.061	10.82	13674.64	401.4	7924.2	147.4	2393.922023	552.2172896	1762.990613	624.0939895	M4	1.642857143	2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.248	118	211	41	0.194312796	8qD3	chr8-92830365-129138455	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr9	7049114	7049114	A	C	ENSMUST00000140466.7	5	ENSMUSG00000047193	missense	L/R	3262	Dync2h1	ENSMUST00000140466.7:c.9785T>G	ENSMUSP00000120007.1:p.Leu3262Arg	H-2-Db	9	11	1	RSIENALVI	LSIENALVI	NetMHC	7.9	18.47	2.338	122	0.238	24.087	39.344	1.633	18.47	7.9	18.9	10.8	59.78882245	37.37833913	62.45540084	37.37403604	M4	1.685714286	1.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.26	122	6	3	0.5	9qA1	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr9	38607056	38607056	T	C	ENSMUST00000217057.1	3	ENSMUSG00000047050	missense	I/T	197	Olfr914	ENSMUST00000217057.1:c.590T>C	ENSMUSP00000150241.1:p.Ile197Thr	H-2-Db	9	5	7	STYVNETEL	STYVNEIEL	NetMHCpan	35.5	65.5	1.845	290	0.252	54.85	115.024	2.097	136.63	55.92	65.5	35.5	111.588644	53.7799012	118.4595286	58.69079604	M4	-0.642857143	-0.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.26	290	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr9	38607351	38607351	A	C	ENSMUST00000217057.1	3	ENSMUSG00000047050	missense	K/N	295	Olfr914	ENSMUST00000217057.1:c.885A>C	ENSMUSP00000150241.1:p.Lys295Asn	H-2-Db	9	6	6	YSLRNNDVK	YSLRNKDVK	SMMPMBEC	177.243	164.274	0.927	148	0.236	463.21	389.992	0.842	593.51	729.35	3742.6	2991.1	186.4747356	197.0697656	164.2744417	177.2433705	M4	-1.557142857	-1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.239	148	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr9	39019219	39019219	CA	C	ENSMUST00000214410.1	5	ENSMUSG00000058820	FS	F/X	107	Olfr146	ENSMUST00000214410.1:c.321del	ENSMUSP00000149294.1:p.Phe107LeufsTer40	H-2-Kb	8	9	3	VILLFQKV	NA	NetMHC	16.44	NA	NA	315	0.235	50.751	NA	NA	NA	16.44	NA	48.2	NA	53.30156983	NA	63.0579721	M4	1.671428571	1.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.243	315	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr9	53398017	53398017	T	C	ENSMUST00000037853.4	1	ENSMUSG00000034487	missense	V/A	460	Poglut3	ENSMUST00000037853.4:c.1379T>C	ENSMUSP00000039313.3:p.Val460Ala	H-2-Kb	8	5	7	YCYYYRAL	YCYYYRVL	NetMHC	25.06	147.28	5.877	76	0.237	36.513	113.658	3.113	147.28	25.06	59.7	29.2	128.7478543	54.66885777	98.56892043	43.82682402	M4	-0.042857143	-0.042857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.272	76	67	13	0.194029851	9qA5.3	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr9	39623870	39623870	T	C	ENSMUST00000077060.2	NA	ENSMUSG00000059867	missense	M/T	249	Olfr960	ENSMUST00000077060.2:c.746T>C	ENSMUSP00000076315.2:p.Met249Thr	H-2-Kb	8	10	2	ITCVYGPV	IMCVYGPV	SMMPMBEC	28.428	51.138	1.799	272	0.228	37.403	59.043	1.579	46.41	37.93	255.1	146	66.94836882	36.87567681	51.13755976	28.42758718	M4	0.985714286	1.028571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.229	272	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr8	124028933	124028933	T	C	ENSMUST00000034457.8	1	ENSMUSG00000031976	missense	Y/H	460	Urb2	ENSMUST00000034457.8:c.1378T>C	ENSMUSP00000034457.8:p.Tyr460His	H-2-Kb	8	7	5	VFQTHAKL	VFQTYAKL	SMM	70.915	18.312	0.258	155	0.168	106.19	20.473	0.193	16.15	114.49	51	301.1	18.31217795	70.91530907	22.63288934	97.89037676	M4	-0.414285714	-0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.173	155	39	3	0.076923077	8qE2	chr8-92830365-129138455	4	2	2	0.99	4.379165722	NA	1	0.765248151	sgMsh2	cell line
chr9	39258136	39258136	A	C	ENSMUST00000076903.2	NA	ENSMUSG00000063380	missense	C/G	182	Olfr945	ENSMUST00000076903.2:c.544T>G	ENSMUSP00000076169.2:p.Cys182Gly	H-2-Kb	8	6	6	INHYFGDI	INHYFCDI	NetMHCpan	102	90.9	0.891	213	0.479	276.289	313.213	1.134	217.41	182.12	90.9	102	466.380088	456.8146256	409.0157201	370.458872	M4	-0.657142857	-0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.472	213	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	2	1	sgMsh2	cell line
chr9	38848204	38848204	C	T	ENSMUST00000217350.1	5	ENSMUSG00000062103	missense	A/V	30	Olfr924	ENSMUST00000217350.1:c.89C>T	ENSMUSP00000149849.1:p.Ala30Val	H-2-Kb	8	11	1	VIYVITVV	AIYVITVV	NetMHC	202.6	1252.59	6.183	255	0.212	217.935	913.276	4.191	1252.59	202.6	849.9	203.2	976.6523514	259.2626764	797.5170931	232.6697911	M4	2.8	2.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.22	255	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.973147938	sgMsh2	cell line
chr9	39018999	39018999	G	T	ENSMUST00000214410.1	5	ENSMUSG00000058820	missense	L/I	181	Olfr146	ENSMUST00000214410.1:c.541C>A	ENSMUSP00000149294.1:p.Leu181Ile	H-2-Kb	8	4	8	INHYFCDI	INHYFCDL	NetMHCpan	90.9	29.4	0.323	188	0.245	313.213	50.321	0.161	26.98	217.41	29.4	90.9	71.90183929	466.380088	71.24263926	409.0157201	M4	-0.242857143	-0.242857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.235	188	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr9	49416677	49416677	C	T	ENSMUST00000034792.6	1	ENSMUSG00000032257	missense	A/T	401	Ankk1	ENSMUST00000034792.6:c.1201G>A	ENSMUSP00000034792.5:p.Ala401Thr	H-2-Kb	8	10	2	TTSGYTPL	TASGYTPL	SMMPMBEC	199.866	316.039	1.581	36	0.25	215.893	301.369	1.396	220.72	218.61	286.7	284.2	329.4124431	213.1768301	316.0385059	199.8664966	M4	-0.242857143	-0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.279	36	0	0	NA	9qA5.3	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr9	42330269	42330269	T	A	ENSMUST00000042190.13	1	ENSMUSG00000037705	missense	I/F	2142	Tecta	ENSMUST00000042190.13:c.6424A>T	ENSMUSP00000040262.7:p.Ile2142Phe	H-2-Kb	8	9	3	TQFSLWHL	TQISLWHL	NetMHCpan	151	731.1	4.842	127	0.228	192.066	921.794	4.799	5003.33	1117.71	731.1	151	961.0367602	198.0341096	882.5513833	186.0972691	M4	0.285714286	0.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.222	127	1	0	0	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.981994738	sgMsh2	cell line
chr9	39942613	39942613	A	G	ENSMUST00000213246.2	2	ENSMUSG00000051493	missense	M/V	118	Olfr974	ENSMUST00000213246.2:c.352A>G	ENSMUSP00000149630.1:p.Met118Val	H-2-Kb	9	11	1	VAYDRYVAI	MAYDRYVAI	NetMHCpan	8.8	14.4	1.636	161	0.311	13.88	30.259	2.18	27.08	14.84	14.4	8.8	39.27443988	15.31475311	33.43874735	12.91962773	M4	-0.014285714	-0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.314	161	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr9	41969739	41969739	T	G	ENSMUST00000060989.8	1	ENSMUSG00000049313	missense	K/T	2162	Sorl1	ENSMUST00000060989.8:c.6485A>C	ENSMUSP00000058613.8:p.Lys2162Thr	H-2-Kb	9	7	5	ILYTTHRRL	ILYTKHRRL	NetMHCpan	38.5	39.5	1.026	26	0.308	207.103	89.609	0.433	28.42	39.88	39.5	38.5	191.9154771	390.9399022	139.7172407	374.3260056	M4	-1.585714286	-0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.272	26	35	6	0.171428571	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr9	39078200	39078200	A	G	ENSMUST00000056499.3	NA	ENSMUSG00000048501	missense	F/L	182	Olfr938	ENSMUST00000056499.3:c.544T>C	ENSMUSP00000055053.2:p.Phe182Leu	H-2-Kb	9	3	9	INHYFCDLL	INHYFCDLF	NetMHC	40.99	129.13	3.15	165	0.255	94.887	238.502	2.514	129.13	40.99	365.4	57	223.9288243	132.7730709	253.0754397	146.3019114	M4	0.7	0.7	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.265	165	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr8	124028933	124028933	T	C	ENSMUST00000034457.8	1	ENSMUSG00000031976	missense	Y/H	460	Urb2	ENSMUST00000034457.8:c.1378T>C	ENSMUSP00000034457.8:p.Tyr460His	H-2-Kb	9	6	6	TVFQTHAKL	TVFQTYAKL	NetMHC	42.12	10.72	0.255	155	0.168	141.749	43.932	0.31	10.72	42.12	14.2	48.4	86.71814915	303.4659719	73.66310144	235.0985768	M4	-0.414285714	0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.173	155	39	3	0.076923077	8qE2	chr8-92830365-129138455	4	2	2	0.99	4.379165722	NA	1	0.765248151	sgMsh2	cell line
chr9	71725634	71725634	T	G	ENSMUST00000072899.8	5	ENSMUSG00000032232	missense	N/T	145	Cgnl1	ENSMUST00000072899.8:c.434A>C	ENSMUSP00000072672.2:p.Asn145Thr	H-2-Kb	9	10	2	LTFQRHPEL	LNFQRHPEL	NetMHCpan	36.8	28.1	0.764	107	0.252	90.799	70.924	0.781	73.26	81.31	28.1	36.8	84.74420308	133.0791444	68.58829388	100.2882377	M4	-1.385714286	-0.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.27	107	111	29	0.261261261	9qD	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr9	40001162	40001162	C	T	ENSMUST00000215523.1	5	ENSMUSG00000059473	missense	D/N	22	Olfr979	ENSMUST00000215523.1:c.64G>A	ENSMUSP00000148903.1:p.Asp22Asn	H-2-Kb	9	11	1	NTMLFVAFL	DTMLFVAFL	NetMHCpan	93.8	277.5	2.958	192	0.271	466.936	583.516	1.25	361.45	137.51	277.5	93.8	805.5824568	796.3610307	982.3132453	805.8421878	M4	3.014285714	3.014285714	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.281	192	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr9	38607056	38607056	T	C	ENSMUST00000217057.1	3	ENSMUSG00000047050	missense	I/T	197	Olfr914	ENSMUST00000217057.1:c.590T>C	ENSMUSP00000150241.1:p.Ile197Thr	H-2-Kb	9	5	7	STYVNETEL	STYVNEIEL	SMM	142.926	151.046	1.057	290	0.252	174.668	183.971	1.053	124.94	151.98	290.4	242.7	151.0462682	142.9255921	216.8952295	197.3558481	M4	-0.642857143	-0.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.26	290	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr9	53398017	53398017	T	C	ENSMUST00000037853.4	1	ENSMUSG00000034487	missense	V/A	460	Poglut3	ENSMUST00000037853.4:c.1379T>C	ENSMUSP00000039313.3:p.Val460Ala	H-2-Kb	9	4	8	LYCYYYRAL	LYCYYYRVL	SMMPMBEC	171.1	211.958	1.239	76	0.237	208.176	424.006	2.037	572.85	175.3	508.3	300.4	339.7113053	241.0515897	211.9580913	171.0999962	M4	-0.042857143	-0.042857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.272	76	67	13	0.194029851	9qA5.3	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr9	7168344	7168344	A	G	ENSMUST00000140466.7	5	ENSMUSG00000047193	missense	Y/H	424	Dync2h1	ENSMUST00000140466.7:c.1270T>C	ENSMUSP00000120007.1:p.Tyr424His	H-2-Kb	9	6	6	QAFLKHKEL	QAFLKYKEL	SMM	165.619	47.327	0.286	128	0.164	206.169	57.487	0.279	42.23	196.44	75.9	439.8	47.3271116	165.6189397	67.64722721	215.8986864	M4	-0.585714286	-0.585714286	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.163	128	7	2	0.285714286	9qA1	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.721014154	sgMsh2	cell line
chr9	39258136	39258136	A	C	ENSMUST00000076903.2	NA	ENSMUSG00000063380	missense	C/G	182	Olfr945	ENSMUST00000076903.2:c.544T>G	ENSMUSP00000076169.2:p.Cys182Gly	H-2-Kb	9	5	7	VINHYFGDI	VINHYFCDI	NetMHC	248.12	402.57	1.622	213	0.479	313.678	336.411	1.072	402.57	248.12	262.7	378.9	382.9217191	379.4110717	289.9011913	248.4562923	M4	-0.657142857	0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.472	213	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	2	1	sgMsh2	cell line
chr9	39258136	39258136	A	C	ENSMUST00000076903.2	NA	ENSMUSG00000063380	missense	C/G	182	Olfr945	ENSMUST00000076903.2:c.544T>G	ENSMUSP00000076169.2:p.Cys182Gly	H-2-Kb	9	6	6	INHYFGDIL	INHYFCDIL	NetMHCpan	249.4	114.5	0.459	213	0.479	350.747	161.261	0.46	107.57	280.66	114.5	249.4	208.0223508	420.8332054	225.553723	456.2995075	M4	0.385714286	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.472	213	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	2	1	sgMsh2	cell line
chr9	39019219	39019219	CA	C	ENSMUST00000214410.1	5	ENSMUSG00000058820	FS	F/X	107	Olfr146	ENSMUST00000214410.1:c.321del	ENSMUSP00000149294.1:p.Phe107LeufsTer40	H-2-Kb	9	3	9	TQLCFFVIL	TQLCFFVIF	NetMHCpan	135.7	1006.2	7.415	315	0.235	195.43	632.783	3.238	923.5	284.8	1006.2	135.7	342.0660715	202.8196365	325.2744865	188.039895	M4	3.485714286	3.485714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.243	315	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr9	39018999	39018999	G	T	ENSMUST00000214410.1	5	ENSMUSG00000058820	missense	L/I	181	Olfr146	ENSMUST00000214410.1:c.541C>A	ENSMUSP00000149294.1:p.Leu181Ile	H-2-Kb	9	4	8	INHYFCDII	INHYFCDLI	NetMHC	329.69	127.26	0.386	188	0.245	436.374	256.697	0.588	127.26	329.69	183.7	356.2	329.6932077	516.547186	338.259498	521.4948213	M4	0.9	0.9	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.235	188	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr9	59324811	59324811	A	G	ENSMUST00000026265.7	1	ENSMUSG00000025235	missense	V/A	362	Bbs4	ENSMUST00000026265.7:c.1085T>C	ENSMUSP00000026265.6:p.Val362Ala	H-2-Kb	9	8	4	RAYAEAVRL	RAYVEAVRL	NetMHCpan	175.4	120.3	0.686	162	0.253	497.9	316.494	0.636	232.02	361.77	120.3	175.4	400.9682638	634.0302809	528.7495369	724.853099	M4	0.328571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.258	162	17	4	0.235294118	9qB	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr9	43791318	43791318	A	G	ENSMUST00000034510.8	1	ENSMUSG00000032012	missense	M/V	121	Nectin1	ENSMUST00000034510.8:c.361A>G	ENSMUSP00000034510.7:p.Met121Val	H-2-Kb	9	11	1	VYICEFATF	MYICEFATF	SMM	270.464	693.601	2.564	72	0.236	347.49	830.945	2.391	915.58	403.74	908.1	406.8	693.6014622	270.4643321	753.7893549	291.2393144	M4	1.457142857	1.571428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	72	7	2	0.285714286	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chr9	53398017	53398017	T	C	ENSMUST00000037853.4	1	ENSMUSG00000034487	missense	V/A	460	Poglut3	ENSMUST00000037853.4:c.1379T>C	ENSMUSP00000039313.3:p.Val460Ala	H-2-Kb	9	3	9	RLYCYYYRA	RLYCYYYRV	NetMHCpan	148.6	32.3	0.217	76	0.237	474.898	102.91	0.217	59.18	443.68	32.3	148.6	150.3522737	599.9430132	146.6391721	506.1159219	M4	-0.771428571	-0.485714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.272	76	67	13	0.194029851	9qA5.3	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	sgMsh2	cell line
chrX	79509993	79509993	A	C	ENSMUST00000197180.5	5	ENSMUSG00000073077	missense	I/S	292	Cfap47	ENSMUST00000197180.5:c.875T>G	ENSMUSP00000142707.2:p.Ile292Ser	H-2-Db	9	6	6	IAINNSSYL	IAINNISYL	NetMHCpan	6.6	6	0.909	20	0.4	15.753	12.492	0.793	6.38	6.81	6	6.6	18.60458556	24.69562376	19.97882763	27.96211387	M4	-0.228571429	0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.403	20	0	0	NA	XqB	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	sgMsh2	cell line
chr9	100855832	100855832	A	T	ENSMUST00000129269.7	1	ENSMUSG00000037286	missense	E/V	414	Stag1	ENSMUST00000129269.7:c.1241A>T	ENSMUSP00000116205.1:p.Glu414Val	H-2-Db	9	3	9	EALSNEDCV	EALSNEDCE	NetMHC	162.17	20754.53	127.98	248	0.19	364.555	11513.819	31.583	20754.53	162.17	29954.3	951.5	2273.107631	411.7370988	1269.316718	317.3730167	M4	-0.114285714	-0.114285714	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.202	248	66	16	0.242424242	9qE3.3	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.893526743	sgMsh2	cell line
chrX	133588496	133588496	A	G	ENSMUST00000149154.7	1	ENSMUSG00000051323	missense	M/T	977	Pcdh19	ENSMUST00000149154.7:c.2930T>C	ENSMUSP00000116886.1:p.Met977Thr	H-2-Db	9	5	7	WMPRNPTPT	WMPRNPMPT	NetMHC	233.44	1377.14	5.899	40	0.475	363.988	1119.682	3.076	1377.14	233.44	3001.1	2034.1	862.223787	394.1123099	717.0839465	333.8643134	M4	-2.028571429	-1.557142857	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.5	40	0	0	NA	XqE3	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	sgMsh2	cell line
chr9	106155782	106155782	A	G	ENSMUST00000036382.12	1	ENSMUSG00000020258	missense	V/A	344	Glyctk	ENSMUST00000036382.12:c.1031T>C	ENSMUSP00000047761.6:p.Val344Ala	H-2-Kb	8	10	2	RAARFYGL	RVARFYGL	NetMHCpan	27.8	30.5	1.097	44	0.159	63.802	70.784	1.109	50	37.5	30.5	27.8	91.56721386	90.10315536	110.8510982	119.8781411	M4	0.571428571	0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.182	44	0	0	NA	9qF1	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.805058749	sgMsh2	cell line
chr9	106155782	106155782	A	G	ENSMUST00000036382.12	1	ENSMUSG00000020258	missense	V/A	344	Glyctk	ENSMUST00000036382.12:c.1031T>C	ENSMUSP00000047761.6:p.Val344Ala	H-2-Kb	8	11	1	AARFYGLL	VARFYGLL	NetMHCpan	46.2	13.4	0.29	44	0.159	94.506	24.316	0.257	14.69	61.15	13.4	46.2	33.94220093	127.8615603	42.43654321	145.4587999	M4	0.857142857	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.182	44	0	0	NA	9qF1	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.805058749	sgMsh2	cell line
chrX	13665387	13665387	T	C	ENSMUST00000053659.1	1	ENSMUSG00000047678	missense	V/A	58	Gpr82	ENSMUST00000053659.1:c.173T>C	ENSMUSP00000062535.1:p.Val58Ala	H-2-Kb	8	8	4	ANLATANL	ANLVTANL	NetMHC	110.98	65.42	0.589	125	0.472	127.103	105.176	0.827	65.42	110.98	97.7	151.4	116.611129	121.5458122	112.6522836	132.6600022	M4	0.5	0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.487	125	0	0	NA	XqA1.1	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	sgMsh2	cell line
chr9	108052065	108052065	A	G	ENSMUST00000162355.7	1	ENSMUSG00000041528	missense	V/A	1271	Rnf123	ENSMUST00000162355.7:c.3812T>C	ENSMUSP00000125745.1:p.Val1271Ala	H-2-Kb	8	8	4	ISAAFQPC	ISAVFQPC	SMM	176.092	168.943	0.959	152	0.211	417.672	294.935	0.706	357.2	561.35	396.1	585.7	168.9429215	176.0921516	232.6697911	273.9933359	M4	0.428571429	0.714285714	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.222	152	33	11	0.333333333	9qF1	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.981994738	sgMsh2	cell line
chr9	106155782	106155782	A	G	ENSMUST00000036382.12	1	ENSMUSG00000020258	missense	V/A	344	Glyctk	ENSMUST00000036382.12:c.1031T>C	ENSMUSP00000047761.6:p.Val344Ala	H-2-Kb	9	10	2	RAARFYGLL	RVARFYGLL	NetMHC	16.87	23.3	1.381	44	0.159	71.279	81.97	1.15	23.3	16.87	21.8	17.5	140.6403699	125.0575741	181.6561058	157.1267038	M4	0.857142857	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.182	44	0	0	NA	9qF1	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.805058749	sgMsh2	cell line
chrX	96462998	96462998	T	C	ENSMUST00000033553.13	1	ENSMUSG00000031209	missense	I/T	25	Heph	ENSMUST00000033553.13:c.74T>C	ENSMUSP00000033553.7:p.Ile25Thr	H-2-Kb	9	10	2	ATRNYYLGI	AIRNYYLGI	NetMHC	58.35	62.63	1.073	96	0.49	177.503	171.74	0.968	62.63	58.35	110	99	242.7224795	287.8127307	233.4801695	256.0059151	M4	-0.385714286	-0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.484	96	0	0	NA	XqC3	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	sgMsh2	cell line
chrX	107399652	107399652	C	T	ENSMUST00000033591.5	1	ENSMUSG00000031239	missense	C/Y	53	Itm2a	ENSMUST00000033591.5:c.158G>A	ENSMUSP00000033591.5:p.Cys53Tyr	H-2-Kb	9	7	5	SSGRYMLTL	SSGRCMLTL	NetMHC	83.04	908.5	10.941	37	0.432	197.901	1000.871	5.057	908.5	83.04	2203.2	112.5	1089.205937	325.1696473	912.5359861	283.3022345	M4	0.371428571	0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.467	37	0	0	NA	XqD	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	sgMsh2	cell line
chr9	96297705	96297705	G	GA	ENSMUST00000165768.3	1	ENSMUSG00000032411	FS	E/EX	140	Tfdp2	ENSMUST00000165768.3:c.426dup	ENSMUSP00000128260.2:p.Glu143ArgfsTer47	H-2-Kb	9	20	0	PAYQFCSGM	NA	NetMHC	85.15	NA	NA	135	0.215	106.96	NA	NA	NA	85.15	NA	165.8	NA	88.53398242	NA	125.3862749	M4	0.171428571	0.171428571	FALSE	FALSE	FALSE	1	FALSE	0	Strelka2;Vardict	2	0.2148	135	82	0	0	9qE3.3	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.95014626	sgMsh2	cell line
chrX	79509993	79509993	A	C	ENSMUST00000197180.5	5	ENSMUSG00000073077	missense	I/S	292	Cfap47	ENSMUST00000197180.5:c.875T>G	ENSMUSP00000142707.2:p.Ile292Ser	H-2-Kb	9	6	6	IAINNSSYL	IAINNISYL	NetMHC	160.47	128.36	0.8	20	0.4	238.325	227.568	0.955	128.36	160.47	106.3	189.5	356.5414284	287.1507798	326.7758854	338.259498	M4	-0.228571429	0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.403	20	0	0	NA	XqB	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	sgMsh2	cell line
chrX	86747655	86747655	G	A	ENSMUST00000113966.7	5	ENSMUSG00000052372	missense	P/S	560	Il1rapl1	ENSMUST00000113966.7:c.1678C>T	ENSMUSP00000109599.1:p.Pro560Ser	H-2-Kb	9	10	2	MSFKRIEPI	MPFKRIEPI	NetMHCpan	58.3	2180.6	37.403	57	0.526	177.366	2262.711	12.757	4631.31	173.91	2180.6	58.3	2344.822647	233.4049166	1946.480243	180.8214719	M4	-0.242857143	-0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.518	57	0	0	NA	XqC1	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	sgMsh2	cell line
chrX	79295219	79295219	C	A	ENSMUST00000197180.5	5	ENSMUSG00000073077	missense	R/M	3058	Cfap47	ENSMUST00000197180.5:c.9173G>T	ENSMUSP00000142707.2:p.Arg3058Met	H-2-Kb	9	8	4	SQTMYYEPF	SQTRYYEPF	NetMHC	247.86	252.35	1.018	32	0.375	310.793	419.757	1.351	252.35	247.86	375.8	268.2	464.6329446	382.9217191	463.713778	353.3865369	M4	-0.528571429	-0.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.381	32	0	0	NA	XqB	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	sgMsh2	cell line
chrX	107399652	107399652	C	T	ENSMUST00000033591.5	1	ENSMUSG00000031239	missense	C/Y	53	Itm2a	ENSMUST00000033591.5:c.158G>A	ENSMUSP00000033591.5:p.Cys53Tyr	H-2-Kb	9	8	4	SGRYMLTLL	SGRCMLTLL	NetMHC	257.32	587.14	2.282	37	0.432	388.256	645.309	1.662	587.14	257.32	780	370.9	561.1900987	405.6112574	703.4771574	560.0799166	M4	0.971428571	0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.467	37	0	0	NA	XqD	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	sgMsh2	cell line
chrX	9849913	9849913	T	C	ENSMUST00000057113.2	NA	ENSMUSG00000048994	missense	S/P	55	H2al3	ENSMUST00000057113.2:c.163T>C	ENSMUSP00000052025.1:p.Ser55Pro	H-2-Kb	9	6	6	LNYVTPSIL	LNYVTSSIL	SMM	217.325	118.334	0.545	127	0.48	286.985	138.425	0.482	151.65	320.37	125.2	253.6	118.334124	217.325156	242.8007366	383.9281887	M4	1.157142857	1.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.483	127	0	0	NA	XqA1.1	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	sgMsh2	cell line
chrX	101673545	101673545	GA	G	ENSMUST00000044475.4	1	ENSMUSG00000034160	FS	K/X	757	Ogt	ENSMUST00000044475.4:c.2271del	ENSMUSP00000045409.4:p.Lys757AsnfsTer23	H-2-Kb	9	22	0	VTQLLICPL	NA	NetMHCpan	324.4	NA	NA	57	0.561	478.008	NA	NA	NA	401.25	NA	324.4	NA	554.7662088	NA	602.9065471	M4	1.9	2.085714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.552	57	79	0	0	XqD	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	sgMsh2	cell line
chr1	140570462	140570462	G	A	ENSMUST00000120796.7	5	ENSMUSG00000052726	missense	M/I	892	Kcnt2	ENSMUST00000120796.7:c.2676G>A	ENSMUSP00000113333.1:p.Met892Ile	H-2-Db	9	7	5	FSISILDTL	FSISMLDTL	NetMHCpan	50	19.8	0.396	171	0.246	159.513	32.575	0.204	11.14	97.4	19.8	50	46.62512402	221.6256386	45.34923862	266.4219484	M5_p20	1.657142857	1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.245	171	0	0	NA	1qF	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr1	85579187	85579187	CT	C	ENSMUST00000093508.6	1	ENSMUSG00000070034	FS	K/X	385	Sp110	ENSMUST00000093508.6:c.1154del	ENSMUSP00000091226.6:p.Lys385SerfsTer13	H-2-Db	9	11	1	SAFRMRQEI	NA	SMMPMBEC	212.114	NA	NA	100	0.34	246.936	NA	NA	NA	356.88	NA	263.4	NA	230.4729708	NA	212.1143253	M5_p20	-0.971428571	-0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.332	100	0	0	NA	1qC5	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	2	1	sgMsh2	cell line
chr1	127412243	127412243	G	T	ENSMUST00000038361.10	1	ENSMUSG00000036155	missense	V/L	454	Mgat5	ENSMUST00000038361.10:c.1360G>T	ENSMUSP00000038359.4:p.Val454Leu	H-2-Kb	8	4	8	QSLVYGKL	QSLVYGKV	NetMHC	15.26	75.8	4.967	126	0.246	52.362	246.565	4.709	75.8	15.26	265.7	39.6	232.6697911	65.12383991	260.4593785	71.90183929	M5_p20	0.771428571	0.771428571	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.238	126	0	0	NA	1qE3	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr1	128364313	128364313	A	G	ENSMUST00000027602.14	1	ENSMUSG00000026356	missense	V/A	476	Dars	ENSMUST00000027602.14:c.1427T>C	ENSMUSP00000027602.8:p.Val476Ala	H-2-Kb	8	11	1	ATMLFLGL	VTMLFLGL	NetMHCpan	13.4	5.5	0.41	124	0.266	28.635	8.869	0.31	5.27	15.32	5.5	13.4	14.47904774	54.54312289	12.23883275	41.95077612	M5_p20	2.142857143	2.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.258	124	0	0	NA	1qE3	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr1	84912361	84912361	C	A	ENSMUST00000027422.6	1	ENSMUSG00000026220	missense	A/S	408	Slc16a14	ENSMUST00000027422.6:c.1222G>T	ENSMUSP00000027422.5:p.Ala408Ser	H-2-Kb	8	6	6	LMHTYSSL	LMHTYASL	NetMHC	32.78	13.28	0.405	140	0.2	74.006	33.853	0.457	13.28	32.78	20.2	35.1	63.64144033	143.7937467	47.50507412	112.911974	M5_p20	-0.157142857	-0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.209	140	0	0	NA	1qC5	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.898482445	sgMsh2	cell line
chr1	74921451	74921451	A	C	ENSMUST00000094844.3	1	ENSMUSG00000047021	missense	F/V	787	Cfap65	ENSMUST00000094844.3:c.2359T>G	ENSMUSP00000092440.3:p.Phe787Val	H-2-Kb	8	4	8	IFYLNFNV	IFYLNFNF	NetMHC	47.65	119.23	2.502	88	0.25	59.119	234.727	3.97	119.23	47.65	254.8	175.9	256.2949211	56.33003227	214.6545013	61.9070344	M5_p20	0.757142857	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.263	88	0	0	NA	1qC4	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr1	152855898	152855898	T	C	ENSMUST00000043560.14	1	ENSMUSG00000042772	missense	R/G	379	Smg7	ENSMUST00000043560.14:c.1135A>G	ENSMUSP00000041241.8:p.Arg379Gly	H-2-Kb	8	5	7	VSMDWLGL	VSMDWLRL	NetMHCpan	34.7	24.7	0.712	200	0.235	70.049	45.03	0.643	38.45	50.82	24.7	34.7	69.30107956	116.611129	51.61072977	89.27708467	M5_p20	0.557142857	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.232	200	0	0	NA	1qG3	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.997358503	sgMsh2	cell line
chr1	132014588	132014588	A	G	ENSMUST00000086556.11	1	ENSMUSG00000026436	missense	Y/C	66	Elk4	ENSMUST00000086556.11:c.197A>G	ENSMUSP00000083743.5:p.Tyr66Cys	H-2-Kb	8	6	6	RALRYCYV	RALRYYYV	NetMHC	53.18	33.42	0.628	73	0.26	95.601	68.626	0.718	33.42	53.18	49.2	71.6	88.05215715	119.6024291	102.2680559	132.3548926	M5_p20	0.742857143	0.742857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.271	73	0	0	NA	1qE4	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr1	144753924	144753924	A	G	ENSMUST00000027603.3	1	ENSMUSG00000026357	missense	L/S	199	Rgs18	ENSMUST00000027603.3:c.596T>C	ENSMUSP00000027603.3:p.Leu199Ser	H-2-Kb	8	6	6	KSETYSHL	KSETYLHL	SMMPMBEC	57.642	95.442	1.656	177	0.22	86.926	176.61	2.032	217.47	90.15	351.5	285.2	135.7500506	83.70280268	95.44210297	57.64212727	M5_p20	-0.928571429	-0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.246	177	0	0	NA	1qF	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr1	88277397	88277397	A	C	ENSMUST00000054674.14	1	ENSMUSG00000044783	missense	L/V	25	Hjurp	ENSMUST00000054674.14:c.73T>G	ENSMUSP00000054263.8:p.Leu25Val	H-2-Kb	8	4	8	SSSRFQTV	SSSRFQTL	NetMHC	96.2	19.62	0.204	105	0.086	224.912	53.233	0.237	19.62	96.2	37.8	204.5	68.66572344	245.323979	84.86722465	307.4255792	M5_p20	-0.471428571	-0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.093	105	0	0	NA	1qD	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.399803193	sgMsh2	cell line
chr1	58595689	58595689	A	T	ENSMUST00000027193.8	1	ENSMUSG00000026032	missense	I/F	67	Ndufb3	ENSMUST00000027193.8:c.199A>T	ENSMUSP00000027193.8:p.Ile67Phe	H-2-Kb	8	9	3	GNFTFPSV	GNITFPSV	NetMHCpan	49.1	289.6	5.898	154	0.149	107.5	583.368	5.427	915.1	105.67	289.6	49.1	648.2462304	133.5795574	518.4895408	109.3301641	M5_p20	0.457142857	0.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.163	154	0	0	NA	1qC1.3	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.700730328	sgMsh2	cell line
chr1	133320995	133320995	CT	C	ENSMUST00000094557.6	1	ENSMUSG00000103421	FS	F/X	101	Golt1a	ENSMUST00000094557.6:c.305del	ENSMUSP00000092136.3:p.Phe102SerfsTer17	H-2-Kb	8	9	4	KGFSLSSL	NA	NetMHCpan	89.7	NA	NA	99	0.273	116.583	NA	NA	NA	109.93	NA	89.7	NA	126.6893185	NA	123.2366829	M5_p20	1.085714286	1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.259	99	0	0	NA	1qE4	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr1	133376953	133376953	G	A	ENSMUST00000135222.8	1	ENSMUSG00000070644	missense	V/M	305	Etnk2	ENSMUST00000135222.8:c.913G>A	ENSMUSP00000114272.2:p.Val305Met	H-2-Kb	8	11	1	MQWLRYYL	VQWLRYYL	NetMHCpan	133.3	60.7	0.455	58	0.224	316.14	133.557	0.422	49.73	195.02	60.7	133.3	244.7597495	522.0835386	206.414404	437.2602513	M5_p20	-0.557142857	-0.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.282	58	0	0	NA	1qE4	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr1	118837734	118837734	G	T	ENSMUST00000062483.14	1	ENSMUSG00000048402	missense	R/S	896	Gli2	ENSMUST00000062483.14:c.2686C>A	ENSMUSP00000054837.8:p.Arg896Ser	H-2-Kb	8	10	2	LSTRLALL	LRTRLALL	NetMHC	199.17	6918.58	34.737	96	0.156	285.782	4907.674	17.173	6918.58	199.17	5610.6	388.9	4204.748265	296.3056959	3852.476516	275.2580317	M5_p20	1.028571429	1.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.151	96	0	0	NA	1qE2.3	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.649142819	sgMsh2	cell line
chr1	151351713	151351713	T	C	ENSMUST00000023918.12	1	ENSMUSG00000023150	missense	Y/H	91	Ivns1abp	ENSMUST00000023918.12:c.271T>C	ENSMUSP00000023918.6:p.Tyr91His	H-2-Kb	8	5	7	VLLNYAHT	VLLNYAYT	SMMPMBEC	192.637	198.034	1.028	211	0.242	277.822	339.303	1.221	371.18	233.73	1146.3	1299.8	307.4255792	321.9141004	198.0341096	192.6371303	M5_p20	0.1	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	211	0	0	NA	1qG1	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr1	59199042	59199042	T	C	ENSMUST00000027178.12	1	ENSMUSG00000026024	missense	I/M	710	Als2	ENSMUST00000027178.12:c.2130A>G	ENSMUSP00000027178.6:p.Ile710Met	H-2-Kb	8	8	4	KSQMLRPL	KSQILRPL	NetMHC	256.26	392.88	1.533	112	0.384	266.552	345.964	1.298	392.88	256.26	972.8	779.2	247.5939338	270.2340064	299.0473787	262.8693795	M5_p20	-0.128571429	-0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.389	112	0	0	NA	1qC1.3	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	2	1	sgMsh2	cell line
chr1	140570462	140570462	G	A	ENSMUST00000120796.7	5	ENSMUSG00000052726	missense	M/I	892	Kcnt2	ENSMUST00000120796.7:c.2676G>A	ENSMUSP00000113333.1:p.Met892Ile	H-2-Kb	8	9	3	ISILDTLL	ISMLDTLL	SMMPMBEC	204.993	246.456	1.202	171	0.246	282.625	348.563	1.233	335.1	320.49	385.7	615.7	362.0261985	244.7597495	246.456343	204.9934573	M5_p20	1.557142857	1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.245	171	0	0	NA	1qF	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr1	151351713	151351713	T	C	ENSMUST00000023918.12	1	ENSMUSG00000023150	missense	Y/H	91	Ivns1abp	ENSMUST00000023918.12:c.271T>C	ENSMUSP00000023918.6:p.Tyr91His	H-2-Kb	9	7	5	LNYAHTAQL	LNYAYTAQL	NetMHCpan	10.4	5.2	0.5	211	0.242	31.415	21.341	0.679	6.52	17.41	5.2	10.4	48.31811688	60.27122243	36.16179668	45.42030017	M5_p20	-0.185714286	-0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	211	0	0	NA	1qG1	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr1	118837734	118837734	G	T	ENSMUST00000062483.14	1	ENSMUSG00000048402	missense	R/S	896	Gli2	ENSMUST00000062483.14:c.2686C>A	ENSMUSP00000054837.8:p.Arg896Ser	H-2-Kb	9	8	4	VSLSTRLAL	VSLRTRLAL	NetMHC	149.17	112.07	0.751	96	0.156	289.756	309.35	1.068	112.07	149.17	241.9	327.1	376.7992242	252.4120012	480.0096849	411.386466	M5_p20	1.028571429	1.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.151	96	0	0	NA	1qE2.3	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.649142819	sgMsh2	cell line
chr1	128364313	128364313	A	G	ENSMUST00000027602.14	1	ENSMUSG00000026356	missense	V/A	476	Dars	ENSMUST00000027602.14:c.1427T>C	ENSMUSP00000027602.8:p.Val476Ala	H-2-Kb	9	6	6	IGLERATML	IGLERVTML	NetMHCpan	169.6	134.8	0.795	124	0.266	303	226.99	0.749	136.11	195.56	134.8	169.6	457.2039776	492.1641774	317.8703353	410.4403034	M5_p20	0.371428571	0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.258	124	0	0	NA	1qE3	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr1	59556301	59556301	C	T	ENSMUST00000114243.7	1	ENSMUSG00000047361	missense	P/L	417	Gm973	ENSMUST00000114243.7:c.1250C>T	ENSMUSP00000109881.1:p.Pro417Leu	H-2-Kb	9	3	9	IHFHAAQPL	IHFHAAQPP	NetMHCpan	115.2	9505.8	82.516	24	0.25	304.162	6515.769	21.422	16133.04	197.07	9505.8	115.2	1897.186388	411.2538721	3525.737704	478.9056933	M5_p20	0.271428571	0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.252	24	0	0	NA	1qC2	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr1	133320995	133320995	CT	C	ENSMUST00000094557.6	1	ENSMUSG00000103421	FS	F/X	101	Golt1a	ENSMUST00000094557.6:c.305del	ENSMUSP00000092136.3:p.Phe102SerfsTer17	H-2-Kb	9	5	8	ISLFKGFSL	ISLFKGFFP	NetMHCpan	103.6	10938.6	105.585	99	0.273	245.353	6837.722	27.869	14319.84	216.39	10938.6	103.6	2061.151905	333.5108752	2736.843727	274.3152803	M5_p20	1.157142857	1.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.259	99	0	0	NA	1qE4	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr1	85579187	85579187	CT	C	ENSMUST00000093508.6	1	ENSMUSG00000070034	FS	K/X	385	Sp110	ENSMUST00000093508.6:c.1154del	ENSMUSP00000091226.6:p.Lys385SerfsTer13	H-2-Kb	9	11	1	SAFRMRQEI	NA	NetMHC	222.54	NA	NA	100	0.34	380.963	NA	NA	NA	222.54	NA	325.3	NA	436.6264089	NA	527.5334467	M5_p20	-0.971428571	-0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.332	100	0	0	NA	1qC5	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	2	1	sgMsh2	cell line
chr1	93408448	93408448	TG	T	ENSMUST00000170883.7	1	ENSMUSG00000034088	FS	P/X	1214	Hdlbp	ENSMUST00000170883.7:c.3641del	ENSMUSP00000127903.1:p.Pro1214GlnfsTer31	H-2-Kb	9	5	7	QVYMKPQHM	QVYMKPPAH	SMM	193.246	1815.976	9.397	128	0.32	254.906	7255.011	28.462	12321	228.46	23646.8	535.4	1815.975563	193.2457716	2189.021363	281.3519957	M5_p20	-1.385714286	-1.057142857	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.328	128	0	0	NA	1qD	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr1	111862558	111862558	TA	T	ENSMUST00000035462.6	1	ENSMUSG00000038702	FS	F/X	82	Dsel	ENSMUST00000035462.6:c.246del	ENSMUSP00000043570.5:p.Phe82LeufsTer8	H-2-Kb	9	5	7	TSHLHILEL	TSHLHIFRA	NetMHCpan	218.7	1985	9.076	361	0.285	272.148	1696.979	6.235	1834.01	285.05	1985	218.7	1559.947563	278.6826939	1288.991341	265.6134116	M5_p20	0.857142857	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.287	361	0	0	NA	1qE2.1	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr1	12848191	12848191	C	T	ENSMUST00000177608.7	1	ENSMUSG00000016918	missense	A/V	793	Sulf1	ENSMUST00000177608.7:c.2378C>T	ENSMUSP00000137523.1:p.Ala793Val	H-2-Kb	9	3	9	HNFLFCEFV	HNFLFCEFA	NetMHCpan	194.7	792.4	4.07	370	0.273	410.496	2005.326	4.885	2531.29	320.83	792.4	194.7	1995.767748	500.1612019	2014.883776	583.781059	M5_p20	2.2	2.2	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.256	370	0	0	NA	1qA3	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr1	85642993	85642993	A	G	ENSMUST00000080204.10	1	ENSMUSG00000070031	missense	K/R	448	Sp140	ENSMUST00000080204.10:c.1343A>G	ENSMUSP00000079095.4:p.Lys448Arg	H-2-Kb	9	10	2	SRMPYYYYF	SKMPYYYYF	SMM	234.482	268.602	1.146	95	0.274	335.317	342.105	1.02	335.61	342.35	348.6	524.7	268.6024688	234.4822647	349.3413547	328.2842143	M5_p20	-0.3	-0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.247	95	0	0	NA	1qC5	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr1	133386824	133386824	CG	C	ENSMUST00000153799.7	1	ENSMUSG00000070643	FS	P/X	314	Sox13	ENSMUST00000153799.7:c.942del	ENSMUSP00000119729.2:p.Ala315ProfsTer83	H-2-Kb	9	54	0	VGLWKTPPI	NA	NetMHCpan	262	NA	NA	41	0.146	432.747	NA	NA	NA	453.16	NA	262	NA	472.1826226	NA	412.3348098	M5_p20	-0.057142857	0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.173	41	0	0	NA	1qE4	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.743719919	sgMsh2	cell line
chr1	85642993	85642993	A	G	ENSMUST00000080204.10	1	ENSMUSG00000070031	missense	K/R	448	Sp140	ENSMUST00000080204.10:c.1343A>G	ENSMUSP00000079095.4:p.Lys448Arg	H-2-Kb	9	4	8	SESSFFSRM	SESSFFSKM	SMM	350.841	639.897	1.824	95	0.274	480.171	992.792	2.068	1226.57	457.71	1243.7	666.4	639.8968908	350.8407252	759.0143731	502.6318444	M5_p20	0.085714286	0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.247	95	0	0	NA	1qC5	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr1	127412243	127412243	G	T	ENSMUST00000038361.10	1	ENSMUSG00000036155	missense	V/L	454	Mgat5	ENSMUST00000038361.10:c.1360G>T	ENSMUSP00000038359.4:p.Val454Leu	H-2-Kb	9	6	6	LVYGKLDSF	LVYGKVDSF	SMM	278.042	542.138	1.95	126	0.246	372.202	726.824	1.953	911.51	463.7	1434.9	1078.9	542.1381881	278.0417415	480.0096849	280.704904	M5_p20	-0.471428571	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.238	126	0	0	NA	1qE3	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr1	150808584	150808584	C	A	ENSMUST00000074783.11	5	ENSMUSG00000066842	missense	G/C	412	Hmcn1	ENSMUST00000074783.11:c.1234G>T	ENSMUSP00000074340.5:p.Gly412Cys	H-2-Kb	9	5	7	TGYDKDCYL	TGYDKDGYL	SMMPMBEC	281.352	241.129	0.857	95	0.074	397.422	570.225	1.435	814.53	465.91	815.3	889.7	325.9192408	328.9349344	241.1293081	281.3519957	M5_p20	-1.028571429	-1.028571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.08	95	0	0	NA	1qG1	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.343916725	sgMsh2	cell line
chr1	131758835	131758835	A	C	ENSMUST00000049027.9	1	ENSMUSG00000042268	missense	K/T	431	Slc26a9	ENSMUST00000049027.9:c.1292A>C	ENSMUSP00000036916.3:p.Lys431Thr	H-2-Kb	9	3	9	GSYLYPLPT	GSYLYPLPK	SMMPMBEC	391.967	1189.187	3.034	82	0.207	468.406	1892.113	4.039	9379.31	2289.35	2510.4	531.2	1273.82568	405.6112574	1189.186581	391.9674468	M5_p20	0.157142857	0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.216	82	0	0	NA	1qE4	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.928575158	sgMsh2	cell line
chr10	68778643	68778643	T	C	ENSMUST00000080995.7	1	ENSMUSG00000060044	missense	L/P	296	Tmem26	ENSMUST00000080995.7:c.887T>C	ENSMUSP00000079789.6:p.Leu296Pro	H-2-Db	9	5	7	FAVKNSPVM	FAVKNSLVM	NetMHC	8.71	9.25	1.062	233	0.253	25.374	27.679	1.091	9.25	8.71	9.8	10.7	46.62512402	43.51309752	45.5585612	40.04700113	M5_p20	0.071428571	0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.264	233	0	0	NA	10qB5.3	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr1	172599080	172599080	CT	C	ENSMUST00000094303.5	5	ENSMUSG00000070504	FS	S/X	100	Fcrl6	ENSMUST00000094303.5:c.298del	ENSMUSP00000091861.4:p.Ser100ValfsTer28	H-2-Db	9	26	0	CSLCNMKPL	NA	NetMHC	30.38	NA	NA	132	0.22	34.518	NA	NA	NA	30.38	NA	32	NA	37.03565246	NA	49.38215065	M5_p20	0.428571429	0.428571429	TRUE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;Vardict	3	0.232	132	0	0	NA	1qH3	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.997358503	sgMsh2	cell line
chr10	24244309	24244309	A	G	ENSMUST00000095784.2	1	ENSMUSG00000020000	missense	M/V	112	Moxd1	ENSMUST00000095784.2:c.334A>G	ENSMUSP00000093460.2:p.Met112Val	H-2-Db	9	9	3	YAVENSTHT	YAMENSTHT	NetMHC	73.96	39.04	0.528	301	0.256	278.875	128.413	0.46	39.04	73.96	85.6	282.6	197.0697656	337.7691648	171.2261138	275.1503059	M5_p20	-1.171428571	-0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.258	301	0	0	NA	10qA4	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr10	75640498	75640498	AG	A	ENSMUST00000095541.10	1	ENSMUSG00000006342	FS	P/X	311	Susd2	ENSMUST00000095541.10:c.933del	ENSMUSP00000093197.3:p.Cys312AlafsTer62	H-2-Db	9	24	0	SSLTMVVTL	NA	NetMHC	85.8	NA	NA	25	0.16	141.249	NA	NA	NA	85.8	NA	122.7	NA	193.0278618	NA	159.7975071	M5_p20	2.357142857	2.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.218	25	0	0	NA	10qC1	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	0.937173077	sgMsh2	cell line
chr1	165539831	165539831	A	G	ENSMUST00000027852.14	1	ENSMUSG00000026567	missense	T/A	557	Adcy10	ENSMUST00000027852.14:c.1669A>G	ENSMUSP00000027852.8:p.Thr557Ala	H-2-Db	9	4	8	SFHQNFYAI	SFHQNFYTI	SMM	105.104	62.176	0.592	174	0.42	167.108	96.911	0.58	73.99	141.21	379.5	647.3	62.17560216	105.1041828	119.8312253	193.0056399	M5_p20	-0.342857143	-0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.411	174	0	0	NA	1qH2.3	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	2	1	sgMsh2	cell line
chr10	5222390	5222390	T	A	ENSMUST00000215295.1	5	ENSMUSG00000096054	missense	E/V	5017	Syne1	ENSMUST00000215295.1:c.15050A>T	ENSMUSP00000150262.1:p.Glu5017Val	H-2-Db	10	9	3	SAVENLRSHM	SAEENLRSHM	NetMHC	57.64	2664.44	46.226	177	0.226	385.591	1949.724	5.056	2664.44	57.64	2716	85.3	805.8421878	685.8829388	1235.008652	952.0724539	M5_p20	-1.4	-0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.252	177	0	0	NA	10qA1	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr10	68778643	68778643	T	C	ENSMUST00000080995.7	1	ENSMUSG00000060044	missense	L/P	296	Tmem26	ENSMUST00000080995.7:c.887T>C	ENSMUSP00000079789.6:p.Leu296Pro	H-2-Db	11	5	7	FAVKNSPVMAL	FAVKNSLVMAL	NetMHCpan	139.4	136.7	0.981	233	0.253	479.924	423.713	0.883	274.55	315.59	136.7	139.4	572.8751711	644.2582669	2605.313561	2641.557083	M5_p20	0.828571429	0.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.264	233	0	0	NA	10qB5.3	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr10	50754122	50754122	G	T	ENSMUST00000035606.9	5	ENSMUSG00000038774	missense	S/I	1769	Ascc3	ENSMUST00000035606.9:c.5306G>T	ENSMUSP00000036726.8:p.Ser1769Ile	H-2-Kb	8	8	4	MNPIYYSL	MNPSYYSL	NetMHC	10.83	12.27	1.133	286	0.248	32.613	36.465	1.118	12.27	10.83	28.9	21.7	44.02911945	43.52512229	62.62388407	64.23030732	M5_p20	-0.028571429	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.246	286	0	0	NA	10qB3	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr1	172599080	172599080	CT	C	ENSMUST00000094303.5	5	ENSMUSG00000070504	FS	S/X	100	Fcrl6	ENSMUST00000094303.5:c.298del	ENSMUSP00000091861.4:p.Ser100ValfsTer28	H-2-Kb	8	18	0	SGLLYPIL	NA	NetMHC	36.01	NA	NA	132	0.22	70.893	NA	NA	NA	36.01	NA	47	NA	94.78508415	NA	125.2391179	M5_p20	1.8	1.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.232	132	0	0	NA	1qH3	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.997358503	sgMsh2	cell line
chr10	62393777	62393777	GC	G	ENSMUST00000020277.8	1	ENSMUSG00000020080	FS	G/X	707	Hkdc1	ENSMUST00000020277.8:c.2120del	ENSMUSP00000020277.8:p.Gly707AlafsTer25	H-2-Kb	8	6	6	VNTEWAGL	VNTEWGGF	NetMHC	62.69	4726.48	75.394	178	0.18	87.051	3759.69	43.189	4726.48	62.69	3640.2	116	3879.180607	81.04757034	3409.887101	93.0550614	M5_p20	-0.485714286	-0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.185	178	0	0	NA	10qB4	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	0.795307427	sgMsh2	cell line
chr10	81509375	81509375	A	G	ENSMUST00000043709.7	1	ENSMUSG00000034792	missense	W/R	219	Gna15	ENSMUST00000043709.7:c.655T>C	ENSMUSP00000049175.7:p.Trp219Arg	H-2-Kb	8	11	1	RIHCFENV	WIHCFENV	SMM	346.529	467.455	1.349	197	0.208	369.99	655.698	1.772	843.94	365.18	1509.8	374.8	467.4552051	346.5293309	451.5855118	392.4099402	M5_p20	0.542857143	0.542857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.192	197	0	0	NA	10qC1	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	0.825400141	sgMsh2	cell line
chr1	154633618	154633618	A	G	ENSMUST00000187541.6	1	ENSMUSG00000004110	missense	L/P	297	Cacna1e	ENSMUST00000187541.6:c.890T>C	ENSMUSP00000140937.1:p.Leu297Pro	H-2-Kb	8	8	4	DNIPFAVL	DNILFAVL	SMM	178.131	93.485	0.525	143	0.147	412.973	165.678	0.401	220.76	608.34	374.2	572	93.48458404	178.1312026	110.5961477	253.9451951	M5_p20	1.714285714	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.161	143	0	0	NA	1qG3	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.69213241	sgMsh2	cell line
chr10	53073510	53073510	A	C	ENSMUST00000105473.2	1	ENSMUSG00000038602	missense	I/L	232	Slc35f1	ENSMUST00000105473.2:c.694A>C	ENSMUSP00000101113.2:p.Ile232Leu	H-2-Kb	8	7	5	TLYGLSNV	TLYGISNV	NetMHCpan	486.3	752.7	1.548	53	0.094	498.671	1333.552	2.674	2203.84	827.9	752.7	486.3	1519.637493	507.8553127	1147.46646	489.4856902	M5_p20	0.828571429	0.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.142	53	0	0	NA	10qB3	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	0.610452187	sgMsh2	cell line
chr10	26271888	26271888	T	C	ENSMUST00000060716.5	5	ENSMUSG00000051354	missense	L/P	487	Samd3	ENSMUST00000060716.5:c.1460T>C	ENSMUSP00000057805.5:p.Leu487Pro	H-2-Kb	9	6	6	QTFNFPETL	QTFNFLETL	NetMHC	70.68	27.41	0.388	99	0.232	201.184	82.234	0.409	27.41	70.68	32	90.4	132.4677013	311.967965	170.7064772	407.6148523	M5_p20	0.014285714	0.014285714	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	99	0	0	NA	10qA4	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr10	40466671	40466671	C	A	ENSMUST00000044672.10	1	ENSMUSG00000038481	missense	P/H	183	Cdk19	ENSMUST00000044672.10:c.548C>A	ENSMUSP00000040936.4:p.Pro183His	H-2-Kb	9	4	8	FARLFNSHL	FARLFNSPL	NetMHC	77.99	65.66	0.842	291	0.182	186.909	138.226	0.74	65.66	77.99	105.8	145.2	170.6514568	228.6177783	218.9021363	293.2580889	M5_p20	-0.228571429	0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.18	291	0	0	NA	10qB1	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	0.773812632	sgMsh2	cell line
chr10	75640498	75640498	AG	A	ENSMUST00000095541.10	1	ENSMUSG00000006342	FS	P/X	311	Susd2	ENSMUST00000095541.10:c.933del	ENSMUSP00000093197.3:p.Cys312AlafsTer62	H-2-Kb	9	24	0	SSLTMVVTL	NA	NetMHC	155.35	NA	NA	25	0.16	294.571	NA	NA	NA	155.35	NA	183.4	NA	453.0123063	NA	405.7420321	M5_p20	2.357142857	2.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.218	25	0	0	NA	10qC1	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	0.937173077	sgMsh2	cell line
chr1	172599080	172599080	CT	C	ENSMUST00000094303.5	5	ENSMUSG00000070504	FS	S/X	100	Fcrl6	ENSMUST00000094303.5:c.298del	ENSMUSP00000091861.4:p.Ser100ValfsTer28	H-2-Kb	9	17	0	SSGLLYPIL	NA	SMM	150.699	NA	NA	132	0.22	183.057	NA	NA	NA	190.22	NA	290.4	NA	150.6988715	NA	175.8935847	M5_p20	1.8	1.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.232	132	0	0	NA	1qH3	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.997358503	sgMsh2	cell line
chr10	50754122	50754122	G	T	ENSMUST00000035606.9	5	ENSMUSG00000038774	missense	S/I	1769	Ascc3	ENSMUST00000035606.9:c.5306G>T	ENSMUSP00000036726.8:p.Ser1769Ile	H-2-Kb	9	7	5	IMNPIYYSL	IMNPSYYSL	NetMHCpan	106.8	122.5	1.147	286	0.248	213.697	155.456	0.727	120.49	198.25	122.5	106.8	188.4126249	229.1447967	231.3396105	261.9690589	M5_p20	-0.028571429	0.457142857	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.246	286	0	0	NA	10qB3	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr1	172599080	172599080	CT	C	ENSMUST00000094303.5	5	ENSMUSG00000070504	FS	S/X	100	Fcrl6	ENSMUST00000094303.5:c.298del	ENSMUSP00000091861.4:p.Ser100ValfsTer28	H-2-Kb	9	13	0	IWISSSGLL	NA	SMM	188.847	NA	NA	132	0.22	318.891	NA	NA	NA	244.91	NA	603.1	NA	188.8469608	NA	392.8710251	M5_p20	1.328571429	1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.232	132	0	0	NA	1qH3	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.997358503	sgMsh2	cell line
chr1	173270231	173270231	A	G	ENSMUST00000213420.1	5	ENSMUSG00000049605	missense	S/G	19	Olfr418	ENSMUST00000213420.1:c.55A>G	ENSMUSP00000150427.1:p.Ser19Gly	H-2-Kb	9	4	8	FVFQGFSGF	FVFQGFSSF	NetMHCpan	196.3	191.2	0.974	248	0.073	310.099	338.26	1.091	338.26	307.51	191.2	196.3	350.8407252	312.6871254	338.259498	332.8511027	M5_p20	0.471428571	1.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2	2	0.072	248	0	0	NA	1qH3	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.309525053	sgMsh2	cell line
chr10	62751842	62751842	CT	C	ENSMUST00000020268.6	1	ENSMUSG00000020074	FS	R/X	848	Ccar1	ENSMUST00000020268.6:c.2542del	ENSMUSP00000020268.5:p.Arg848GlufsTer40	H-2-Kb	9	13	1	MILKMMMKL	NA	NetMHCpan	322.1	NA	NA	170	0.182	459.096	NA	NA	NA	352.93	NA	322.1	NA	657.8244329	NA	565.2622723	M5_p20	0.785714286	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.191	170	0	0	NA	10qB4	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	0.821101182	sgMsh2	cell line
chr10	23897365	23897365	T	C	ENSMUST00000041416.7	1	ENSMUSG00000037440	missense	Y/H	97	Vnn1	ENSMUST00000041416.7:c.289T>C	ENSMUSP00000040599.7:p.Tyr97His	H-2-Kb	9	7	5	TIYPHLEEI	TIYPYLEEI	NetMHCpan	162.8	59.8	0.367	81	0.136	280.695	187.481	0.668	155.05	490.72	59.8	162.8	228.6177783	285.1740477	219.9125427	276.216743	M5_p20	-0.685714286	-0.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.166	81	0	0	NA	10qA4	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	0.713627205	sgMsh2	cell line
chr11	36008549	36008549	T	C	ENSMUST00000102801.7	5	ENSMUSG00000049336	missense	Y/C	2594	Tenm2	ENSMUST00000102801.7:c.7781A>G	ENSMUSP00000099865.1:p.Tyr2594Cys	H-2-Db	9	5	7	SVLNNACYL	SVLNNAYYL	NetMHCpan	29.4	22.1	0.752	277	0.278	58.079	41.36	0.712	16.41	35.69	22.1	29.4	60.62056782	80.46740575	79.53714539	98.30373071	M5_p20	0.514285714	0.642857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.281	277	0	0	NA	11qA4	chr11-3133045-45005041	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr10	129842856	129842856	C	T	ENSMUST00000205013.2	5	ENSMUSG00000049052	missense	R/Q	62	Olfr812	ENSMUST00000205013.2:c.185G>A	ENSMUSP00000145482.2:p.Arg62Gln	H-2-Db	9	8	4	FFLQNFSFI	FFLRNFSFI	SMM	44.835	37.811	0.843	217	0.23	70.678	55.803	0.79	56.07	79.9	200.3	202.3	37.8111599	44.83529174	55.53541224	61.45680804	M5_p20	0.871428571	0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.234	217	0	0	NA	10qD3	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	sgMsh2	cell line
chr10	129902524	129902524	C	T	ENSMUST00000071557.1	NA	ENSMUSG00000061961	missense	R/H	68	Olfr815	ENSMUST00000071557.1:c.203G>A	ENSMUSP00000071488.1:p.Arg68His	H-2-Db	9	8	4	FFLHNFSFL	FFLRNFSFL	SMM	84.844	52.556	0.619	152	0.164	131.733	75.97	0.577	72.22	146.9	216.1	521.3	52.55572119	84.84377821	79.72049745	116.5654917	M5_p20	0.814285714	0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.165	152	0	0	NA	10qD3	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	sgMsh2	cell line
chr11	43556667	43556667	G	T	ENSMUST00000050574.6	1	ENSMUSG00000044707	missense	R/L	59	Ccnjl	ENSMUST00000050574.6:c.176G>T	ENSMUSP00000058111.6:p.Arg59Leu	H-2-Db	9	9	3	SALHLAIYL	SARHLAIYL	NetMHC	172.76	6022.1	34.858	74	0.216	214.407	4374.189	20.401	6022.1	172.76	8244.8	501.5	2082.667788	190.8182902	2726.277127	237.9961875	M5_p20	1.885714286	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.187	74	0	0	NA	11qB1.1	chr11-3133045-45005041	4	2	2	0.97	4.169990295	NA	1	0.803905345	sgMsh2	cell line
chr11	58757857	58757857	G	A	ENSMUST00000215071.1	5	ENSMUSG00000107677	missense	S/N	64	Olfr316	ENSMUST00000215071.1:c.191G>A	ENSMUSP00000151136.1:p.Ser64Asn	H-2-Db	9	7	5	YFLLNQLSI	YFLLSQLSI	SMM	53.164	1078.003	20.277	615	0.086	141.124	3409.713	24.161	8143.16	200.67	5247	352.8	1078.003076	53.16428776	1572.425217	81.57742638	M5_p20	1.157142857	1.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.082	615	0	0	NA	11qB1.3	chr11-45883360-69579350	4	2	2	0.97	4.169990295	NA	1	0.352514643	sgMsh2	cell line
chr11	16883544	16883544	A	C	ENSMUST00000020329.12	1	ENSMUSG00000020122	missense	N/T	604	Egfr	ENSMUST00000020329.12:c.1811A>C	ENSMUSP00000020329.6:p.Asn604Thr	H-2-Db	9	6	6	IMGENTTLV	IMGENNTLV	NetMHC	212.83	726.56	3.414	195	0.185	410.09	685.788	1.672	726.56	212.83	1407.9	883	499.5972049	333.1347981	645.0152757	487.0460214	M5_p20	-0.114285714	-0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.19	195	0	0	NA	11qA2	chr11-3133045-45005041	4	2	2	0.97	4.169990295	NA	1	0.816802223	sgMsh2	cell line
chr10	129501829	129501829	T	C	ENSMUST00000218901.1	NA	ENSMUSG00000044025	missense	F/S	315	Olfr790	ENSMUST00000218901.1:c.944T>C	ENSMUSP00000151759.1:p.Phe315Ser	H-2-Kb	8	13	2	ISFSSKNL	IFFSSKNL	NetMHCpan	18.5	115.8	6.259	77	0.416	19.094	83.126	4.354	110.95	18.52	115.8	18.5	45.89231861	19.66708524	55.30189331	20.68902384	M5_p20	-0.457142857	-0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.451	77	0	0	NA	10qD3	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	2	1	sgMsh2	cell line
chr10	127170070	127170070	CT	C	ENSMUST00000006914.10	1	ENSMUSG00000006731	FS	F/X	302	B4galnt1	ENSMUST00000006914.10:c.907del	ENSMUSP00000006914.9:p.Tyr303ThrfsTer6	H-2-Kb	8	6	7	ASIRRFTL	ASIRRFYP	NetMHC	29	3440.11	118.624	217	0.24	210.968	4453.498	21.11	3440.11	29	1848.8	57.4	6176.465217	435.2512229	5466.885777	364.5356443	M5_p20	0.085714286	0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.25	217	0	0	NA	10qD3	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr10	129626025	129626025	A	G	ENSMUST00000204979.2	2	ENSMUSG00000095002	missense	L/P	12	Olfr798	ENSMUST00000204979.2:c.35T>C	ENSMUSP00000144716.1:p.Leu12Pro	H-2-Kb	8	5	7	SVSEFIPL	SVSEFILL	NetMHC	38.39	159.69	4.16	90	0.189	72.402	215.586	2.978	159.69	38.39	96.3	42.3	271.4813499	102.5038081	318.9627742	115.8083836	M5_p20	1.342857143	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.212	90	0	0	NA	10qD3	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	sgMsh2	cell line
chr11	66094123	66094123	T	C	ENSMUST00000080665.9	5	ENSMUSG00000056752	missense	R/G	1207	Dnah9	ENSMUST00000080665.9:c.3619A>G	ENSMUSP00000079494.3:p.Arg1207Gly	H-2-Kb	8	10	2	VGQQVAPL	VRQQVAPL	SMM	66.182	315.312	4.764	153	0.176	74.627	1070.287	14.342	1743.62	66.89	2996.9	350.4	315.3116375	66.18201718	396.9538331	82.36448742	M5_p20	0.114285714	0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.177	153	0	0	NA	11qB3	chr11-45883360-69579350	4	2	2	0.97	4.169990295	NA	1	0.760915755	sgMsh2	cell line
chr10	129842856	129842856	C	T	ENSMUST00000205013.2	5	ENSMUSG00000049052	missense	R/Q	62	Olfr812	ENSMUST00000205013.2:c.185G>A	ENSMUSP00000145482.2:p.Arg62Gln	H-2-Kb	8	11	1	QNFSFIEI	RNFSFIEI	NetMHCpan	44.2	23.5	0.532	217	0.23	162.873	110.677	0.68	76.23	89.84	23.5	44.2	145.1242539	235.9065504	149.534017	312.4208431	M5_p20	0.971428571	0.971428571	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.234	217	0	0	NA	10qD3	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	sgMsh2	cell line
chr11	34688463	34688463	A	T	ENSMUST00000093193.11	1	ENSMUSG00000020143	missense	L/M	708	Dock2	ENSMUST00000093193.11:c.2122T>A	ENSMUSP00000090884.5:p.Leu708Met	H-2-Kb	8	9	3	ATMAYKKL	ATLAYKKL	NetMHCpan	62.7	80.7	1.287	344	0.183	117.441	94.582	0.805	84.03	96.29	80.7	62.7	118.7790917	204.0515979	105.1332282	138.5925865	M5_p20	-0.328571429	-0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.186	344	0	0	NA	11qA4	chr11-3133045-45005041	4	2	2	0.97	4.169990295	NA	1	0.799606386	sgMsh2	cell line
chr11	58757857	58757857	G	A	ENSMUST00000215071.1	5	ENSMUSG00000107677	missense	S/N	64	Olfr316	ENSMUST00000215071.1:c.191G>A	ENSMUSP00000151136.1:p.Ser64Asn	H-2-Kb	8	6	6	MYFLLNQL	MYFLLSQL	NetMHCpan	183.7	77.4	0.421	615	0.086	238.921	133.441	0.559	129.56	253.53	77.4	183.7	148.8469706	240.8463117	137.3219621	236.9954455	M5_p20	0.842857143	0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.082	615	0	0	NA	11qB1.3	chr11-45883360-69579350	4	2	2	0.97	4.169990295	NA	1	0.352514643	sgMsh2	cell line
chr10	129902524	129902524	C	T	ENSMUST00000071557.1	NA	ENSMUSG00000061961	missense	R/H	68	Olfr815	ENSMUST00000071557.1:c.203G>A	ENSMUSP00000071488.1:p.Arg68His	H-2-Kb	8	9	3	FLHNFSFL	FLRNFSFL	SMMPMBEC	169.723	177.313	1.045	152	0.164	198.671	230.456	1.16	404.09	324.72	283.6	215.9	154.0777756	181.4429089	177.3127641	169.7227266	M5_p20	0.814285714	0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.165	152	0	0	NA	10qD3	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	sgMsh2	cell line
chr10	129902524	129902524	C	T	ENSMUST00000071557.1	NA	ENSMUSG00000061961	missense	R/H	68	Olfr815	ENSMUST00000071557.1:c.203G>A	ENSMUSP00000071488.1:p.Arg68His	H-2-Kb	8	11	1	HNFSFLEI	RNFSFLEI	NetMHCpan	59.4	21.6	0.364	152	0.164	354.936	132.872	0.374	97.19	334.26	21.6	59.4	168.5543635	446.4162552	175.6871509	375.6124682	M5_p20	0.871428571	0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.165	152	0	0	NA	10qD3	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	sgMsh2	cell line
chr11	57528173	57528173	A	T	ENSMUST00000020830.13	1	ENSMUSG00000020522	missense	D/V	53	Mfap3	ENSMUST00000020830.13:c.158A>T	ENSMUSP00000020830.7:p.Asp53Val	H-2-Kb	8	4	8	SAGSYSGV	SAGSYSGD	NetMHC	397.02	22519.42	56.721	137	0.212	446.118	12796.838	28.685	22519.42	397.02	29869.5	1113.8	3074.255792	459.9811133	2458.895091	432.2549746	M5_p20	0.328571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.216	137	0	0	NA	11qB1.3	chr11-45883360-69579350	4	2	2	0.97	4.169990295	NA	1	0.928575158	sgMsh2	cell line
chr10	88905051	88905051	C	T	ENSMUST00000020255.7	1	ENSMUSG00000020062	missense	A/V	276	Slc5a8	ENSMUST00000020255.7:c.827C>T	ENSMUSP00000020255.6:p.Ala276Val	H-2-Kb	8	6	6	KSRLHVKL	KSRLHAKL	SMM	244.197	84.477	0.346	261	0.245	339.486	88.128	0.26	81.22	414.28	429	755.3	84.47729517	244.1968177	91.77829809	264.691503	M5_p20	-0.085714286	-0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.245	261	0	0	NA	10qC1	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr10	129321725	129321725	T	C	ENSMUST00000215503.1	5	ENSMUSG00000049573	missense	L/P	34	Olfr780	ENSMUST00000215503.1:c.101T>C	ENSMUSP00000149258.1:p.Leu34Pro	H-2-Kb	8	5	7	FLFITYPL	FLFITYLL	SMMPMBEC	248.165	683.502	2.754	203	0.241	274.394	824.79	3.006	1199.73	510.58	893.2	263.2	756.3799359	285.5880296	683.502331	248.1646968	M5_p20	1.614285714	1.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.249	203	0	0	NA	10qD3	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr11	50237259	50237259	T	A	ENSMUST00000102772.3	1	ENSMUSG00000020377	missense	N/I	55	Ltc4s	ENSMUST00000102772.3:c.164A>T	ENSMUSP00000099833.3:p.Asn55Ile	H-2-Kb	8	11	1	ICSEYFPL	NCSEYFPL	SMMPMBEC	163.207	1944.196	11.912	28	0.214	262.12	3149.402	12.015	8197	536.95	3700.2	307.1	2598.603386	217.1400833	1944.195797	163.2074578	M5_p20	0.271428571	0.371428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.238	28	0	0	NA	11qB1.3	chr11-45883360-69579350	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr11	3186096	3186096	T	C	ENSMUST00000081318.12	1	ENSMUSG00000023764	missense	T/A	79	Sfi1	ENSMUST00000081318.12:c.235A>G	ENSMUSP00000080066.6:p.Thr79Ala	H-2-Kb	8	8	4	IRVAFGRV	IRVTFGRV	SMMPMBEC	296.989	270.857	0.912	1357	0.008	478.463	392.576	0.82	454.98	619.84	1433.1	1465	330.1718172	337.0854446	270.8569601	296.9887511	M5_p20	0.514285714	0.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.008186	1357	0	0	NA	11qA1	chr11-3133045-45005041	4	2	2	0.97	4.169990295	NA	1	0.035191279	sgMsh2	cell line
chr10	130472110	130472110	CA	C	ENSMUST00000164227.3	5	ENSMUSG00000091511	FS	L/X	753	Vmn2r87	ENSMUST00000164227.3:c.2258del	ENSMUSP00000129215.2:p.Leu753TrpfsTer25	H-2-Kb	8	15	0	ASLWLSWL	NA	SMM	312.421	NA	NA	385	0.213	407.641	NA	NA	NA	717.62	NA	457.4	NA	312.4208431	NA	357.8821189	M5_p20	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.229	385	0	0	NA	10qD3	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	sgMsh2	cell line
chr10	130472110	130472110	CA	C	ENSMUST00000164227.3	5	ENSMUSG00000091511	FS	L/X	753	Vmn2r87	ENSMUST00000164227.3:c.2258del	ENSMUSP00000129215.2:p.Leu753TrpfsTer25	H-2-Kb	8	19	0	LSWLGTFL	NA	SMMPMBEC	307.426	NA	NA	385	0.213	420.694	NA	NA	NA	1101.66	NA	318.1	NA	523.2870654	NA	307.4255792	M5_p20	1.085714286	1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.229	385	0	0	NA	10qD3	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	sgMsh2	cell line
chr11	34688463	34688463	A	T	ENSMUST00000093193.11	1	ENSMUSG00000020143	missense	L/M	708	Dock2	ENSMUST00000093193.11:c.2122T>A	ENSMUSP00000090884.5:p.Leu708Met	H-2-Kb	9	11	1	MAYKKLMTV	LAYKKLMTV	NetMHCpan	53.3	93.4	1.752	344	0.183	111.459	136.253	1.222	92.9	63.29	93.4	53.3	179.1059444	159.628341	191.9773533	191.9773533	M5_p20	0.014285714	0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.186	344	0	0	NA	11qA4	chr11-3133045-45005041	4	2	2	0.97	4.169990295	NA	1	0.799606386	sgMsh2	cell line
chr10	129626025	129626025	A	G	ENSMUST00000204979.2	2	ENSMUSG00000095002	missense	L/P	12	Olfr798	ENSMUST00000204979.2:c.35T>C	ENSMUSP00000144716.1:p.Leu12Pro	H-2-Kb	9	4	8	TSVSEFIPL	TSVSEFILL	NetMHC	66.41	157	2.364	90	0.189	133.399	221.183	1.658	157	66.41	211.1	85.2	231.2650474	181.5975563	301.4740949	216.3963843	M5_p20	1.342857143	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.212	90	0	0	NA	10qD3	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	sgMsh2	cell line
chr11	34688463	34688463	A	T	ENSMUST00000093193.11	1	ENSMUSG00000020143	missense	L/M	708	Dock2	ENSMUST00000093193.11:c.2122T>A	ENSMUSP00000090884.5:p.Leu708Met	H-2-Kb	9	3	9	IQQHFSATM	IQQHFSATL	NetMHC	108.3	43.99	0.406	344	0.183	432.806	302.966	0.7	43.99	108.3	87	183.1	518.9314595	682.5115418	629.8686601	853.5913393	M5_p20	-0.242857143	-0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.186	344	0	0	NA	11qA4	chr11-3133045-45005041	4	2	2	0.97	4.169990295	NA	1	0.799606386	sgMsh2	cell line
chr10	129902524	129902524	C	T	ENSMUST00000071557.1	NA	ENSMUSG00000061961	missense	R/H	68	Olfr815	ENSMUST00000071557.1:c.203G>A	ENSMUSP00000071488.1:p.Arg68His	H-2-Kb	9	11	1	HNFSFLEIL	RNFSFLEIL	NetMHCpan	92	32.1	0.349	152	0.164	128.463	85.198	0.663	56.08	132.73	32.1	92	114.3167845	124.1966839	180.405594	213.4273146	M5_p20	1.914285714	1.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.165	152	0	0	NA	10qD3	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	sgMsh2	cell line
chr10	88905051	88905051	C	T	ENSMUST00000020255.7	1	ENSMUSG00000020062	missense	A/V	276	Slc5a8	ENSMUST00000020255.7:c.827C>T	ENSMUSP00000020255.6:p.Ala276Val	H-2-Kb	9	11	1	VKLSLYVNL	AKLSLYVNL	NetMHC	134.67	484.91	3.601	261	0.245	176.876	519.155	2.935	484.91	134.67	658.9	183.1	507.1191374	170.6514568	531.1901339	192.4199068	M5_p20	1.428571429	1.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.245	261	0	0	NA	10qC1	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr10	129842856	129842856	C	T	ENSMUST00000205013.2	5	ENSMUSG00000049052	missense	R/Q	62	Olfr812	ENSMUST00000205013.2:c.185G>A	ENSMUSP00000145482.2:p.Arg62Gln	H-2-Kb	9	5	7	PMYFFLQNF	PMYFFLRNF	SMM	35.819	48.207	1.346	217	0.23	102.805	114.491	1.114	145.18	146.42	291.9	336.2	48.20698829	35.81871488	83.80115415	59.19022625	M5_p20	0.557142857	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.234	217	0	0	NA	10qD3	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	sgMsh2	cell line
chr11	50237259	50237259	T	A	ENSMUST00000102772.3	1	ENSMUSG00000020377	missense	N/I	55	Ltc4s	ENSMUST00000102772.3:c.164A>T	ENSMUSP00000099833.3:p.Asn55Ile	H-2-Kb	9	10	2	VICSEYFPL	VNCSEYFPL	SMM	116.174	87.722	0.755	28	0.214	137.523	100.849	0.733	107.02	148.79	115.7	213.3	87.72229799	116.1742828	94.67820161	126.255411	M5_p20	0.271428571	1.2	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.238	28	0	0	NA	11qB1.3	chr11-45883360-69579350	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr11	61546578	61546578	A	C	ENSMUST00000179936.7	1	ENSMUSG00000001036	missense	I/S	56	Epn2	ENSMUST00000179936.7:c.167T>G	ENSMUSP00000136950.1:p.Ile56Ser	H-2-Kb	9	6	6	VAFSESMSM	VAFSEIMSM	NetMHCpan	123.9	82.3	0.664	119	0.294	145.532	154.465	1.061	140.62	155.51	82.3	123.9	168.310031	135.5532704	254.8296748	263.7849417	M5_p20	0.1	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.293	119	0	0	NA	11qB2	chr11-45883360-69579350	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr11	62219339	62219339	T	C	ENSMUST00000201364.3	5	ENSMUSG00000042331	missense	Y/H	1048	Specc1	ENSMUST00000201364.3:c.3142T>C	ENSMUSP00000143853.1:p.Tyr1048His	H-2-Kb	9	7	5	SVMQHVAQI	SVMQYVAQI	NetMHCpan	185.3	48.9	0.264	155	0.303	307.66	190.111	0.618	45.96	199.17	48.9	185.3	501.3141926	625.3310593	331.3217908	416.1500968	M5_p20	0.314285714	0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.292	155	0	0	NA	11qB2	chr11-45883360-69579350	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr10	129902524	129902524	C	T	ENSMUST00000071557.1	NA	ENSMUSG00000061961	missense	R/H	68	Olfr815	ENSMUST00000071557.1:c.203G>A	ENSMUSP00000071488.1:p.Arg68His	H-2-Kb	9	5	7	PMYFFLHNF	PMYFFLRNF	SMM	45.615	48.207	1.057	152	0.164	144.806	114.491	0.791	145.18	214.06	291.9	312.1	48.20698829	45.61524376	83.80115415	75.55270188	M5_p20	0.6	0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.165	152	0	0	NA	10qD3	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	sgMsh2	cell line
chr10	121615116	121615116	CA	C	ENSMUST00000039810.7	5	ENSMUSG00000034667	FS	F/X	126	Xpot	ENSMUST00000039810.7:c.378del	ENSMUSP00000043488.7:p.Phe126LeufsTer9	H-2-Kb	9	8	4	KFFLTSSQL	NA	NetMHC	253.95	NA	NA	108	0.269	400.763	NA	NA	NA	253.95	NA	453.1	NA	348.4255546	NA	544.816184	M5_p20	0.657142857	0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.266	108	0	0	NA	10qD2	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr10	117676081	117676081	A	G	ENSMUST00000020399.5	1	ENSMUSG00000020183	missense	Q/R	310	Cpm	ENSMUST00000020399.5:c.929A>G	ENSMUSP00000020399.5:p.Gln310Arg	H-2-Kb	9	6	6	IEYIKRVHL	IEYIKQVHL	SMMPMBEC	156.765	166.437	1.062	107	0.178	241.371	256.344	1.062	299.82	274.72	556.9	577.1	212.8678139	208.0223508	166.4370463	156.7653224	M5_p20	-0.057142857	1.27E-16	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.186	107	0	0	NA	10qD2	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	0.799606386	sgMsh2	cell line
chr10	130472110	130472110	CA	C	ENSMUST00000164227.3	5	ENSMUSG00000091511	FS	L/X	753	Vmn2r87	ENSMUST00000164227.3:c.2258del	ENSMUSP00000129215.2:p.Leu753TrpfsTer25	H-2-Kb	9	9	3	GSWLWGASL	NA	NetMHCpan	270.2	NA	NA	385	0.213	374.862	NA	NA	NA	300.72	NA	270.2	NA	563.7804345	NA	449.0037829	M5_p20	0.914285714	0.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.229	385	0	0	NA	10qD3	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	sgMsh2	cell line
chr10	129902524	129902524	C	T	ENSMUST00000071557.1	NA	ENSMUSG00000061961	missense	R/H	68	Olfr815	ENSMUST00000071557.1:c.203G>A	ENSMUSP00000071488.1:p.Arg68His	H-2-Kb	9	7	5	YFFLHNFSF	YFFLRNFSF	NetMHC	405.75	398.02	0.981	152	0.164	455.504	426.473	0.936	398.02	405.75	900.7	946.2	413.1521337	427.6711949	439.7947088	483.3369531	M5_p20	0.671428571	0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.165	152	0	0	NA	10qD3	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	sgMsh2	cell line
chr11	58757857	58757857	G	A	ENSMUST00000215071.1	5	ENSMUSG00000107677	missense	S/N	64	Olfr316	ENSMUST00000215071.1:c.191G>A	ENSMUSP00000151136.1:p.Ser64Asn	H-2-Kb	9	5	7	PMYFLLNQL	PMYFLLSQL	SMM	69.841	60.969	0.873	615	0.086	256.406	183.625	0.716	298.82	430.35	478.1	884.5	60.9691303	69.84092778	68.43054518	82.46126636	M5_p20	0.842857143	0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.082	615	0	0	NA	11qB1.3	chr11-45883360-69579350	4	2	2	0.97	4.169990295	NA	1	0.352514643	sgMsh2	cell line
chr10	130472110	130472110	CA	C	ENSMUST00000164227.3	5	ENSMUSG00000091511	FS	L/X	753	Vmn2r87	ENSMUST00000164227.3:c.2258del	ENSMUSP00000129215.2:p.Leu753TrpfsTer25	H-2-Kb	9	17	0	LWLSWLGTF	NA	SMM	245.533	NA	NA	385	0.213	456.634	NA	NA	NA	499.03	NA	2307.2	NA	245.5330734	NA	414.2380608	M5_p20	1.085714286	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.229	385	0	0	NA	10qD3	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	sgMsh2	cell line
chr11	3186096	3186096	T	C	ENSMUST00000081318.12	1	ENSMUSG00000023764	missense	T/A	79	Sfi1	ENSMUST00000081318.12:c.235A>G	ENSMUSP00000080066.6:p.Thr79Ala	H-2-Kb	9	10	2	VAFGRVTPS	VTFGRVTPS	SMM	117.52	161.849	1.377	1357	0.008	440.424	554.824	1.26	1281.06	994.95	915	730.1	161.8489924	117.5195176	194.6480243	150.7474589	M5_p20	-0.142857143	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.008186	1357	0	0	NA	11qA1	chr11-3133045-45005041	4	2	2	0.97	4.169990295	NA	1	0.035191279	sgMsh2	cell line
chr11	95969851	95969851	T	G	ENSMUST00000013559.2	1	ENSMUSG00000013415	missense	S/R	359	Igf2bp1	ENSMUST00000013559.2:c.1075A>C	ENSMUSP00000013559.2:p.Ser359Arg	H-2-Db	9	8	4	AAMRLQSHL	AAMSLQSHL	SMM	336.217	330.842	0.984	170	0.247	466.447	489.283	1.049	583.59	561.66	681.7	531.5	330.8415143	336.2172565	394.9753567	401.39319	M5_p20	-0.357142857	0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.255	170	0	0	NA	11qD	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr11	110158302	110158302	T	TA	ENSMUST00000044850.3	1	ENSMUSG00000041797	FS	-/X	226-227	Abca9	ENSMUST00000044850.3:c.678dup	ENSMUSP00000036338.3:p.Ile227TyrfsTer140	H-2-Kb	8	114	0	VSYWLGYL	NA	NetMHC	3.31	NA	NA	87	0.253	5.817	NA	NA	NA	3.31	NA	5.3	NA	6.334903447	NA	7.477217263	M5_p20	0.414285714	0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.264	87	0	0	NA	11qE1	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr11	99003065	99003065	A	C	ENSMUST00000068031.7	1	ENSMUSG00000020914	missense	L/R	1001	Top2a	ENSMUST00000068031.7:c.3002T>G	ENSMUSP00000068896.7:p.Leu1001Arg	H-2-Kb	8	8	4	SMVRFDHV	SMVLFDHV	NetMHC	72.71	103.13	1.418	97	0.227	211.214	250.193	1.185	103.13	72.71	146.6	132.2	353.7854762	290.2284617	374.7485835	304.6070846	M5_p20	0.271428571	0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.262	97	0	0	NA	11qD	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr11	72058021	72058021	G	A	ENSMUST00000075258.12	1	ENSMUSG00000040543	missense	R/W	769	Pitpnm3	ENSMUST00000075258.12:c.2305C>T	ENSMUSP00000074737.6:p.Arg769Trp	H-2-Kb	8	9	3	VVWHWQDL	VVRHWQDL	NetMHCpan	164	1200.7	7.321	175	0.24	222.002	907.754	4.089	1202.31	270.69	1200.7	164	614.8086937	260.4593785	592.570463	183.5439188	M5_p20	-0.571428571	-0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.247	175	0	0	NA	11qB4	chr11-69590981-82929860	4	4	0	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr11	110158302	110158302	T	TA	ENSMUST00000044850.3	1	ENSMUSG00000041797	FS	-/X	226-227	Abca9	ENSMUST00000044850.3:c.678dup	ENSMUSP00000036338.3:p.Ile227TyrfsTer140	H-2-Kb	8	17	0	YFLLFTYI	NA	SMM	210.737	NA	NA	87	0.253	342.228	NA	NA	NA	471.77	NA	1021.9	NA	210.7366151	NA	212.686537	M5_p20	2.242857143	2.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.264	87	0	0	NA	11qE1	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr11	110158302	110158302	T	TA	ENSMUST00000044850.3	1	ENSMUSG00000041797	FS	-/X	226-227	Abca9	ENSMUST00000044850.3:c.678dup	ENSMUSP00000036338.3:p.Ile227TyrfsTer140	H-2-Kb	8	8	5	TDFFYFLL	TDFFIFFC	SMMPMBEC	49.061	12756.749	260.016	87	0.253	73.637	14347.604	194.843	19893.09	528.74	14804	97.3	13891.20754	49.97352678	12756.74869	49.06140712	M5_p20	1.6	1.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.264	87	0	0	NA	11qE1	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr11	110158302	110158302	T	TA	ENSMUST00000044850.3	1	ENSMUSG00000041797	FS	-/X	226-227	Abca9	ENSMUST00000044850.3:c.678dup	ENSMUSP00000036338.3:p.Ile227TyrfsTer140	H-2-Kb	8	7	6	ATDFFYFL	ATDFFIFF	SMM	109.079	2527.784	23.174	87	0.253	144.17	2322.439	16.109	5760.3	597.4	1689.7	163.1	2527.784229	109.0787117	2117.093311	125.2391179	M5_p20	0.957142857	0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.264	87	0	0	NA	11qE1	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr11	102204900	102204900	A	G	ENSMUST00000008999.11	1	ENSMUSG00000008855	missense	S/P	376	Hdac5	ENSMUST00000008999.11:c.1126T>C	ENSMUSP00000008999.5:p.Ser376Pro	H-2-Kb	8	7	5	SLYTPPSL	SLYTSPSL	NetMHCpan	230.2	132.4	0.575	80	0.1	372.519	266.446	0.715	344.25	608.03	132.4	230.2	245.323979	342.5626424	287.5676312	402.476011	M5_p20	0.228571429	0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.122	80	0	0	NA	11qD	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	0.524473006	sgMsh2	cell line
chr11	117772845	117772845	T	C	ENSMUST00000026659.9	1	ENSMUSG00000025572	missense	I/V	514	Tmc6	ENSMUST00000026659.9:c.1540A>G	ENSMUSP00000026659.3:p.Ile514Val	H-2-Kb	8	10	2	LVLKMAVL	LILKMAVL	SMMPMBEC	395.13	281.67	0.713	99	0.192	457.257	401.56	0.878	565.93	825.08	490.7	423.9	312.4208431	490.6140712	281.6696149	395.1299959	M5_p20	2.257142857	2.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.199	99	0	0	NA	11qE2	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	0.855492854	sgMsh2	cell line
chr11	110154560	110154560	T	C	ENSMUST00000044850.3	1	ENSMUSG00000041797	missense	T/A	316	Abca9	ENSMUST00000044850.3:c.946A>G	ENSMUSP00000036338.3:p.Thr316Ala	H-2-Kb	9	10	2	IALSFLMSV	ITLSFLMSV	NetMHC	26.53	31.48	1.187	96	0.271	80.227	110.086	1.372	31.48	26.53	42.3	31.3	177.8729877	129.1546361	241.1293081	186.7454375	M5_p20	2.128571429	2.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.246	96	0	0	NA	11qE1	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr11	110158302	110158302	T	TA	ENSMUST00000044850.3	1	ENSMUSG00000041797	FS	-/X	226-227	Abca9	ENSMUST00000044850.3:c.678dup	ENSMUSP00000036338.3:p.Ile227TyrfsTer140	H-2-Kb	9	6	7	VATDFFYFL	VATDFFIFF	NetMHCpan	19.8	177.7	8.975	87	0.253	55.872	174.795	3.128	300.65	27	177.7	19.8	142.2689086	84.74420308	171.8897579	113.5664369	M5_p20	0.957142857	0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.264	87	0	0	NA	11qE1	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr11	116080661	116080661	TG	T	ENSMUST00000074628.12	1	ENSMUSG00000034341	FS	P/X	139	Wbp2	ENSMUST00000074628.12:c.417del	ENSMUSP00000074204.6:p.Asn140MetfsTer46	H-2-Kb	9	25	0	MSFPRQSPM	NA	NetMHCpan	33.3	NA	NA	95	0.221	66.159	NA	NA	NA	56.09	NA	33.3	NA	76.22720572	NA	85.35913393	M5_p20	-1.042857143	-0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.228	95	0	0	NA	11qE2	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	0.980162667	sgMsh2	cell line
chr11	110158302	110158302	T	TA	ENSMUST00000044850.3	1	ENSMUSG00000041797	FS	-/X	226-227	Abca9	ENSMUST00000044850.3:c.678dup	ENSMUSP00000036338.3:p.Ile227TyrfsTer140	H-2-Kb	9	118	0	LGYLHPYRL	NA	NetMHCpan	27.7	NA	NA	87	0.253	108.333	NA	NA	NA	56.3	NA	27.7	NA	160.3651519	NA	178.7516256	M5_p20	-0.614285714	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.264	87	0	0	NA	11qE1	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr11	67211360	67211360	C	A	ENSMUST00000124516.7	1	ENSMUSG00000056328	missense	R/S	826	Myh1	ENSMUST00000124516.7:c.2476C>A	ENSMUSP00000117569.1:p.Arg826Ser	H-2-Kb	9	6	6	IQYNVSAFM	IQYNVRAFM	NetMHC	125.35	144.71	1.154	333	0.201	385.659	420.869	1.091	144.71	125.35	131.9	140.2	830.0609824	631.1171763	697.02764	656.5230826	M5_p20	0.728571429	0.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.187	333	0	0	NA	11qB3	chr11-45883360-69579350	4	2	2	0.97	4.169990295	NA	1	0.803905345	sgMsh2	cell line
chr11	116047690	116047690	T	C	ENSMUST00000021116.11	1	ENSMUSG00000020770	missense	F/L	40	Unk	ENSMUST00000021116.11:c.118T>C	ENSMUSP00000021116.5:p.Phe40Leu	H-2-Kb	9	3	9	QHYTYLKEL	QHYTYLKEF	NetMHC	157.48	600.28	3.812	179	0.173	176.351	480.118	2.723	600.28	157.48	601.2	194.9	266.1399065	157.8010905	359.9564831	208.0894201	M5_p20	-0.442857143	-0.442857143	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.179	179	0	0	NA	11qE2	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	0.769513673	sgMsh2	cell line
chr11	95969851	95969851	T	G	ENSMUST00000013559.2	1	ENSMUSG00000013415	missense	S/R	359	Igf2bp1	ENSMUST00000013559.2:c.1075A>C	ENSMUSP00000013559.2:p.Ser359Arg	H-2-Kb	9	8	4	AAMRLQSHL	AAMSLQSHL	NetMHC	159.08	222.94	1.401	170	0.247	409.595	316.523	0.773	222.94	159.08	226.5	212.3	406.5462879	606.8900259	544.816184	635.696763	M5_p20	-0.357142857	0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.255	170	0	0	NA	11qD	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr11	87035223	87035223	T	C	ENSMUST00000020804.7	1	ENSMUSG00000061666	missense	T/A	299	Gdpd1	ENSMUST00000020804.7:c.895A>G	ENSMUSP00000020804.7:p.Thr299Ala	H-2-Kb	9	9	3	VMADYPTKL	VMTDYPTKL	NetMHCpan	134	233	1.739	63	0.365	178.725	248.628	1.391	288.51	222.06	233	134	258.8868552	177.8729877	238.3691237	179.5767056	M5_p20	-0.771428571	0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.387	63	0	0	NA	11qC	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	2	1	sgMsh2	cell line
chr11	110158302	110158302	T	TA	ENSMUST00000044850.3	1	ENSMUSG00000041797	FS	-/X	226-227	Abca9	ENSMUST00000044850.3:c.678dup	ENSMUSP00000036338.3:p.Ile227TyrfsTer140	H-2-Kb	9	7	6	ATDFFYFLL	ATDFFIFFC	SMM	120.534	11145.768	92.47	87	0.253	148.653	11782.909	79.265	12420.05	230.73	14181.4	165.1	11145.76803	120.5341196	7555.270188	132.2056452	M5_p20	1.6	1.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.264	87	0	0	NA	11qE1	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr11	69944246	69944246	A	G	ENSMUST00000018710.12	1	ENSMUSG00000018566	missense	M/T	380	Slc2a4	ENSMUST00000018710.12:c.1139T>C	ENSMUSP00000018710.6:p.Met380Thr	H-2-Kb	9	11	1	TSYVSIVAI	MSYVSIVAI	NetMHCpan	173.5	137.8	0.794	43	0.116	288.038	313.641	1.089	235.44	232.32	137.8	173.5	391.8411118	385.5760057	405.7420321	343.7557727	M5_p20	2.442857143	2.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.111	43	0	0	NA	11qB3	chr11-69590981-82929860	4	4	0	0.97	4.169990295	NA	1	0.477184456	sgMsh2	cell line
chr11	90276799	90276799	T	C	ENSMUST00000004050.6	1	ENSMUSG00000003948	missense	V/A	218	Mmd	ENSMUST00000004050.6:c.653T>C	ENSMUSP00000004050.6:p.Val218Ala	H-2-Kb	9	8	4	AAAAHYYAI	AAAVHYYAI	NetMHCpan	202.7	163.1	0.805	146	0.288	362.424	227.256	0.627	215.67	347.18	163.1	202.7	238.8416155	377.6678362	305.6680173	419.0347115	M5_p20	0.585714286	0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.277	146	0	0	NA	11qC	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr11	110158302	110158302	T	TA	ENSMUST00000044850.3	1	ENSMUSG00000041797	FS	-/X	226-227	Abca9	ENSMUST00000044850.3:c.678dup	ENSMUSP00000036338.3:p.Ile227TyrfsTer140	H-2-Kb	9	12	1	YFLLCYFLL	NA	SMM	188.847	NA	NA	87	0.253	300.564	NA	NA	NA	354.95	NA	3495.6	NA	188.8469608	NA	246.1784313	M5_p20	2.742857143	2.742857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.264	87	0	0	NA	11qE1	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr11	102061618	102061618	G	A	ENSMUST00000017458.10	1	ENSMUSG00000017314	missense	A/V	343	Mpp2	ENSMUST00000017458.10:c.1028C>T	ENSMUSP00000017458.3:p.Ala343Val	H-2-Kb	9	5	7	LIYEEVVRM	LIYEEVARM	NetMHCpan	384	183	0.477	54	0.204	422.457	242.216	0.573	185.13	506.32	183	384	299.3022626	431.6283877	304.9650004	413.2853397	M5_p20	-0.357142857	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.205	54	0	0	NA	11qD	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	0.881286609	sgMsh2	cell line
chr11	110158302	110158302	T	TA	ENSMUST00000044850.3	1	ENSMUSG00000041797	FS	-/X	226-227	Abca9	ENSMUST00000044850.3:c.678dup	ENSMUSP00000036338.3:p.Ile227TyrfsTer140	H-2-Kb	9	16	0	CYFLLFTYI	NA	SMM	217.325	NA	NA	87	0.253	424.914	NA	NA	NA	542.75	NA	1310	NA	217.325156	NA	307.0789168	M5_p20	2.242857143	2.242857143	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.264	87	0	0	NA	11qE1	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr11	110158302	110158302	T	TA	ENSMUST00000044850.3	1	ENSMUSG00000041797	FS	-/X	226-227	Abca9	ENSMUST00000044850.3:c.678dup	ENSMUSP00000036338.3:p.Ile227TyrfsTer140	H-2-Kb	9	10	3	FFYFLLCYF	NA	SMM	249.523	NA	NA	87	0.253	468.89	NA	NA	NA	607.98	NA	6288	NA	249.5226649	NA	329.7995054	M5_p20	1.871428571	2.457142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.264	87	0	0	NA	11qE1	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr11	114987405	114987405	T	G	ENSMUST00000045075.2	1	ENSMUSG00000034641	missense	T/P	94	Cd300ld	ENSMUST00000045075.2:c.280A>C	ENSMUSP00000047022.2:p.Thr94Pro	H-2-Kb	9	4	8	RDFIFTVPM	RDFIFTVTM	SMMPMBEC	413.285	752.056	1.82	470	0.236	465.648	927.044	1.991	2749.39	1529.58	988.9	447	865.1870294	484.2950164	752.0556875	413.2853397	M5_p20	1.985714286	1.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.236	470	0	0	NA	11qE2	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr12	69190025	69190025	GT	G	ENSMUST00000021356.5	1	ENSMUSG00000020973	FS	T/X	770	Dnaaf2	ENSMUST00000021356.5:c.2308del	ENSMUSP00000021356.5:p.Thr770LeufsTer12	H-2-Db	9	5	7	SSLLNKLWF	SSLLNKTVV	NetMHC	102.74	8.12	0.079	461	0.191	148.467	27.724	0.187	8.12	102.74	17.2	273.1	38.24899249	138.2356312	40.41755147	158.6974688	M5_p20	0.842857143	0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.192	461	0	0	NA	12qC2	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.825400141	sgMsh2	cell line
chr11	119436427	119436427	C	A	ENSMUST00000093902.11	5	ENSMUSG00000070327	missense	L/I	1748	Rnf213	ENSMUST00000093902.11:c.5242C>A	ENSMUSP00000091429.5:p.Leu1748Ile	H-2-Db	9	6	6	IMMQSIVYM	IMMQSLVYM	NetMHC	142.34	112.63	0.791	122	0.131	335.388	275.754	0.822	112.63	142.34	183.7	208.8	367.8070082	461.9766231	406.9771255	477.0567004	M5_p20	0.985714286	1.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.151	122	0	0	NA	11qE2	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	0.649142819	sgMsh2	cell line
chr11	119436427	119436427	C	A	ENSMUST00000093902.11	5	ENSMUSG00000070327	missense	L/I	1748	Rnf213	ENSMUST00000093902.11:c.5242C>A	ENSMUSP00000091429.5:p.Leu1748Ile	H-2-Kb	8	11	1	IVYMSAFL	LVYMSAFL	NetMHC	5.56	23.25	4.182	122	0.131	11.11	43.603	3.925	23.25	5.56	27.4	8.2	71.57148034	15.09176382	59.80534499	14.0197413	M5_p20	1.771428571	1.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.151	122	0	0	NA	11qE2	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	0.649142819	sgMsh2	cell line
chr12	83712466	83712466	A	G	ENSMUST00000101225.1	5	ENSMUSG00000019969	missense	M/V	84	Psen1	ENSMUST00000101225.1:c.250A>G	ENSMUSP00000098786.1:p.Met84Val	H-2-Kb	8	9	3	VIVLFVPV	VIMLFVPV	NetMHC	18.88	11.4	0.604	279	0.194	26.078	18.634	0.715	11.4	18.88	27.1	61.2	20.45219854	26.40827294	16.81666993	25.74779247	M5_p20	3.157142857	3.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.193	279	0	0	NA	12qD1	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.8296991	sgMsh2	cell line
chr12	98275382	98275382	T	C	ENSMUST00000075072.5	1	ENSMUSG00000021886	missense	M/T	98	Gpr65	ENSMUST00000075072.5:c.293T>C	ENSMUSP00000074581.4:p.Met98Thr	H-2-Kb	8	6	6	VFFTYTNF	VFFTYMNF	SMMPMBEC	20.358	18.019	0.885	373	0.118	21.686	17.92	0.826	17.82	22.25	45.7	37.4	16.50973111	21.12224132	18.01938647	20.35822922	M5_p20	0.314285714	0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.133	373	0	0	NA	12qE	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.571761556	sgMsh2	cell line
chr12	13231462	13231462	G	T	ENSMUST00000071103.9	1	ENSMUSG00000037149	missense	L/M	367	Ddx1	ENSMUST00000071103.9:c.1099C>A	ENSMUSP00000065987.8:p.Leu367Met	H-2-Kb	8	6	6	SQVRFMVL	SQVRFLVL	NetMHC	46.29	208.16	4.497	308	0.153	75.25	158.09	2.101	208.16	46.29	84.1	56.8	153.7234066	93.70008827	162.4575876	106.5957771	M5_p20	1.271428571	1.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.163	308	0	0	NA	12qA1.1	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.700730328	sgMsh2	cell line
chr12	29987228	29987228	C	T	ENSMUST00000122328.7	1	ENSMUSG00000020674	missense	S/F	335	Pxdn	ENSMUST00000122328.7:c.1004C>T	ENSMUSP00000113703.1:p.Ser335Phe	H-2-Kb	8	4	8	VTLRYLGF	VTLRYLGS	NetMHC	53.05	934.01	17.606	274	0.135	86.021	550.51	6.4	934.01	53.05	1084.5	55.7	112.3931906	137.9558114	167.0090478	116.3429308	M5_p20	0.5	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.131	274	0	0	NA	12qA2	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.563163638	sgMsh2	cell line
chr12	108361203	108361203	T	C	ENSMUST00000021684.5	1	ENSMUSG00000021259	missense	F/L	425	Cyp46a1	ENSMUST00000021684.5:c.1273T>C	ENSMUSP00000021684.4:p.Phe425Leu	H-2-Kb	8	11	1	LTYFPFSL	FTYFPFSL	NetMHCpan	22.8	31.8	1.395	197	0.234	102.142	85.132	0.833	67.05	60.82	31.8	22.8	103.2143305	143.4630303	134.1961326	157.666708	M5_p20	0.714285714	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.205	197	0	0	NA	12qF1	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.881286609	sgMsh2	cell line
chr12	75716177	75716177	C	A	ENSMUST00000021450.5	1	ENSMUSG00000021054	missense	G/V	410	Sgpp1	ENSMUST00000021450.5:c.1229G>T	ENSMUSP00000021450.4:p.Gly410Val	H-2-Kb	8	8	4	ITYVMVGF	ITYGMVGF	NetMHCpan	71.7	131.8	1.838	260	0.165	126.749	402.15	3.173	373.04	92.9	131.8	71.7	585.787365	231.6007706	431.2608157	160.597951	M5_p20	1.528571429	1.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.187	260	0	0	NA	12qC3	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.803905345	sgMsh2	cell line
chr12	24955384	24955384	T	C	ENSMUST00000110942.10	1	ENSMUSG00000020646	missense	V/A	386	Mboat2	ENSMUST00000110942.10:c.1157T>C	ENSMUSP00000106567.3:p.Val386Ala	H-2-Kb	8	5	7	LTFLTGAL	LTFLTGVL	SMMPMBEC	126.398	284.276	2.249	314	0.143	148.313	332.574	2.242	970.17	184.97	290.4	137.5	374.7485835	159.1255801	284.2758718	126.3979412	M5_p20	1.485714286	1.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.145	314	0	0	NA	12qA1.3	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.623349065	sgMsh2	cell line
chr12	69190025	69190025	GT	G	ENSMUST00000021356.5	1	ENSMUSG00000020973	FS	T/X	770	Dnaaf2	ENSMUST00000021356.5:c.2308del	ENSMUSP00000021356.5:p.Thr770LeufsTer12	H-2-Kb	8	14	0	KTYLTLTL	NA	NetMHCpan	98.5	NA	NA	461	0.191	204.29	NA	NA	NA	217.21	NA	98.5	NA	205.466016	NA	203.114066	M5_p20	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.192	461	0	0	NA	12qC2	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.825400141	sgMsh2	cell line
chr12	103104843	103104843	CA	C	ENSMUST00000101099.11	1	ENSMUSG00000021198	FS	Q/X	1330	Unc79	ENSMUST00000101099.11:c.3994del	ENSMUSP00000098659.5:p.Met1332CysfsTer59	H-2-Kb	8	32	0	ITLTWANT	NA	SMMPMBEC	112.912	NA	NA	246	0.203	220.203	NA	NA	NA	238.69	NA	942.4	NA	201.7158386	NA	112.911974	M5_p20	-0.128571429	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.187	246	0	0	NA	12qE	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.803905345	sgMsh2	cell line
chr12	72556654	72556654	T	A	ENSMUST00000044352.7	1	ENSMUSG00000034501	missense	S/T	489	Pcnx4	ENSMUST00000044352.7:c.1465T>A	ENSMUSP00000038916.6:p.Ser489Thr	H-2-Kb	8	10	2	VTIGFTRA	VSIGFTRA	SMMPMBEC	216.641	129.64	0.598	308	0.179	273.909	146.801	0.536	79.74	275.71	178.1	397.8	163.9607892	272.1071791	129.6402918	216.6406749	M5_p20	0.4	0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.187	308	0	0	NA	12qC3	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.803905345	sgMsh2	cell line
chr12	79261656	79261656	C	T	ENSMUST00000021547.7	1	ENSMUSG00000066440	missense	D/N	1705	Zfyve26	ENSMUST00000021547.7:c.5113G>A	ENSMUSP00000021547.6:p.Asp1705Asn	H-2-Kb	8	6	6	IGFTLNEV	IGFTLDEV	NetMHCpan	303.9	1187.3	3.907	217	0.184	375.252	970.102	2.585	1333.11	383.96	1187.3	303.9	696.209588	367.908651	752.9046857	382.5956254	M5_p20	0.385714286	0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.195	217	0	0	NA	12qC3	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.838297018	sgMsh2	cell line
chr12	54685943	54685943	TG	T	ENSMUST00000161592.7	1	ENSMUSG00000054302	FS	H/X	127	Eapp	ENSMUST00000161592.7:c.381del	ENSMUSP00000123698.1:p.His127GlnfsTer52	H-2-Kb	8	53	0	SLFQTVML	NA	SMMPMBEC	306.719	NA	NA	228	0.311	372.068	NA	NA	NA	617.01	NA	379.6	NA	364.5356443	NA	306.71852	M5_p20	1.757142857	1.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.294	228	0	0	NA	12qC1	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	2	1	sgMsh2	cell line
chr12	83712466	83712466	A	G	ENSMUST00000101225.1	5	ENSMUSG00000019969	missense	M/V	84	Psen1	ENSMUST00000101225.1:c.250A>G	ENSMUSP00000098786.1:p.Met84Val	H-2-Kb	8	11	1	VLFVPVTL	MLFVPVTL	NetMHCpan	144	452.2	3.14	279	0.194	238.949	507.964	2.126	2314.13	621.55	452.2	144	518.4895408	243.0748352	497.4391928	234.8226582	M5_p20	2.357142857	2.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.193	279	0	0	NA	12qD1	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.8296991	sgMsh2	cell line
chr12	31708932	31708932	A	G	ENSMUST00000236002.1	NA	ENSMUSG00000044067	missense	I/T	397	Gpr22	ENSMUST00000236002.1:c.1190T>C	ENSMUSP00000158030.1:p.Ile397Thr	H-2-Kb	8	8	4	GTTTFHPL	GTTIFHPL	SMMPMBEC	181.443	200.789	1.107	461	0.165	344.511	294.142	0.854	1035.85	893.41	338.4	454.2	249.8848923	234.8226582	200.7890385	181.4429089	M5_p20	-0.042857143	-0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.165	461	0	0	NA	12qA3	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.709328246	sgMsh2	cell line
chr12	98275382	98275382	T	C	ENSMUST00000075072.5	1	ENSMUSG00000021886	missense	M/T	98	Gpr65	ENSMUST00000075072.5:c.293T>C	ENSMUSP00000074581.4:p.Met98Thr	H-2-Kb	9	5	7	SVFFTYTNF	SVFFTYMNF	NetMHCpan	31	33.7	1.087	373	0.118	50.82	51.291	1.009	31.09	34.48	33.7	31	68.88267433	67.15989369	103.5738214	93.37916798	M5_p20	0.314285714	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.133	373	0	0	NA	12qE	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.571761556	sgMsh2	cell line
chr12	31709410	31709410	T	C	ENSMUST00000236002.1	NA	ENSMUSG00000044067	missense	S/G	238	Gpr22	ENSMUST00000236002.1:c.712A>G	ENSMUSP00000158030.1:p.Ser238Gly	H-2-Kb	9	9	3	STGEYYTEL	STSEYYTEL	NetMHC	37.25	32.97	0.885	338	0.157	75.815	105.246	1.388	32.97	37.25	31.7	45.4	181.1798935	108.9205937	177.521108	106.2306894	M5_p20	-0.985714286	-0.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.169	338	0	0	NA	12qA3	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.726524082	sgMsh2	cell line
chr12	13231462	13231462	G	T	ENSMUST00000071103.9	1	ENSMUSG00000037149	missense	L/M	367	Ddx1	ENSMUST00000071103.9:c.1099C>A	ENSMUSP00000065987.8:p.Leu367Met	H-2-Kb	9	5	7	LSQVRFMVL	LSQVRFLVL	NetMHC	73.6	226.78	3.081	308	0.153	164.159	216.007	1.316	226.78	73.6	177.6	125.9	239.9440583	224.9624328	205.2343263	202.4184057	M5_p20	1.271428571	1.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.163	308	0	0	NA	12qA1.1	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.700730328	sgMsh2	cell line
chr11	119436427	119436427	C	A	ENSMUST00000093902.11	5	ENSMUSG00000070327	missense	L/I	1748	Rnf213	ENSMUST00000093902.11:c.5242C>A	ENSMUSP00000091429.5:p.Leu1748Ile	H-2-Kb	9	9	3	QSIVYMSAF	QSLVYMSAF	NetMHC	98.57	99.5	1.009	122	0.131	224.554	229.185	1.021	99.5	98.57	292.6	260.8	194.5852873	193.6912491	263.7849417	255.4171179	M5_p20	1.871428571	1.871428571	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.151	122	0	0	NA	11qE2	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	0.649142819	sgMsh2	cell line
chr11	120134832	120134832	A	G	ENSMUST00000103018.10	1	ENSMUSG00000061306	missense	M/T	226	Slc38a10	ENSMUST00000103018.10:c.677T>C	ENSMUSP00000099307.4:p.Met226Thr	H-2-Kb	9	11	1	TSSIFASSL	MSSIFASSL	NetMHCpan	80.7	63.8	0.791	259	0.239	321.872	325.304	1.011	80.3	100.18	63.8	80.7	570.3087043	561.1900987	641.5787927	543.5631415	M5_p20	1.5	1.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.257	259	0	0	NA	11qE2	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr12	84106461	84106461	G	T	ENSMUST00000056822.3	1	ENSMUSG00000043487	missense	G/V	159	Acot6	ENSMUST00000056822.3:c.476G>T	ENSMUSP00000056131.3:p.Gly159Val	H-2-Kb	9	11	1	VIIDLYGSI	GIIDLYGSI	NetMHCpan	77.9	1628.7	20.908	261	0.142	151.163	1429.64	9.458	2254.44	116.01	1628.7	77.9	1230.580418	226.5217979	933.7916798	186.3159349	M5_p20	0.971428571	1.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.151	261	0	0	NA	12qD1	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.649142819	sgMsh2	cell line
chr12	31547124	31547124	T	C	ENSMUST00000001253.7	1	ENSMUSG00000020651	missense	N/S	248	Slc26a4	ENSMUST00000001253.7:c.743A>G	ENSMUSP00000001253.7:p.Asn248Ser	H-2-Kb	9	5	7	VSTKNYSGI	VSTKNYNGI	NetMHC	120.76	277.9	2.301	265	0.174	269.151	316.632	1.176	277.9	120.76	586.2	300.6	296.558243	258.8868552	336.7053368	279.4151821	M5_p20	-0.871428571	-0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.187	265	0	0	NA	12qA2	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.803905345	sgMsh2	cell line
chr12	69190025	69190025	GT	G	ENSMUST00000021356.5	1	ENSMUSG00000020973	FS	T/X	770	Dnaaf2	ENSMUST00000021356.5:c.2308del	ENSMUSP00000021356.5:p.Thr770LeufsTer12	H-2-Kb	9	11	1	LWFKTYLTL	NA	SMM	52.736	NA	NA	461	0.191	87.638	NA	NA	NA	123.24	NA	86.1	NA	52.73634174	NA	89.17641311	M5_p20	0.542857143	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.192	461	0	0	NA	12qC2	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.825400141	sgMsh2	cell line
chr12	72556654	72556654	T	A	ENSMUST00000044352.7	1	ENSMUSG00000034501	missense	S/T	489	Pcnx4	ENSMUST00000044352.7:c.1465T>A	ENSMUSP00000038916.6:p.Ser489Thr	H-2-Kb	9	10	2	VTIGFTRAF	VSIGFTRAF	NetMHC	135.99	77.66	0.571	308	0.179	241.68	150.693	0.624	77.66	135.99	132.3	200.8	169.0869148	282.5595563	216.3963843	351.7628732	M5_p20	0.9	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.187	308	0	0	NA	12qC3	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.803905345	sgMsh2	cell line
chr11	119436427	119436427	C	A	ENSMUST00000093902.11	5	ENSMUSG00000070327	missense	L/I	1748	Rnf213	ENSMUST00000093902.11:c.5242C>A	ENSMUSP00000091429.5:p.Leu1748Ile	H-2-Kb	9	10	2	SIVYMSAFL	SLVYMSAFL	NetMHC	139.34	965.14	6.927	122	0.131	324.272	1119.483	3.452	965.14	139.34	728.7	275.2	1273.82568	373.3447082	1582.158541	547.3309412	M5_p20	1.771428571	1.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.151	122	0	0	NA	11qE2	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	0.649142819	sgMsh2	cell line
chr12	75716177	75716177	C	A	ENSMUST00000021450.5	1	ENSMUSG00000021054	missense	G/V	410	Sgpp1	ENSMUST00000021450.5:c.1229G>T	ENSMUSP00000021450.4:p.Gly410Val	H-2-Kb	9	11	1	VMVGFSITF	GMVGFSITF	SMM	93.349	507.119	5.433	260	0.165	171.911	1429.349	8.314	2096.18	191.68	3962.6	381.5	507.1191374	93.34907095	762.5178243	152.1423079	M5_p20	1.771428571	2.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.187	260	0	0	NA	12qC3	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.803905345	sgMsh2	cell line
chr12	55707969	55707969	A	G	ENSMUST00000085385.6	1	ENSMUSG00000021027	missense	L/S	1179	Ralgapa1	ENSMUST00000085385.6:c.3536T>C	ENSMUSP00000082503.5:p.Leu1179Ser	H-2-Kb	9	4	8	YNIMHCGSL	YNIMHCGLL	NetMHCpan	97.8	114.6	1.172	237	0.143	248.131	188.429	0.759	147.64	214.91	114.6	97.8	277.4022632	379.4110717	229.2186762	281.3519957	M5_p20	1.185714286	1.185714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.138	237	0	0	NA	12qC1	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.593256351	sgMsh2	cell line
chr12	98275382	98275382	T	C	ENSMUST00000075072.5	1	ENSMUSG00000021886	missense	M/T	98	Gpr65	ENSMUST00000075072.5:c.293T>C	ENSMUSP00000074581.4:p.Met98Thr	H-2-Kb	9	11	1	TNFYSSTAF	MNFYSSTAF	SMM	318.5	323.676	1.016	373	0.118	365.539	317.878	0.87	312.08	327.2	253.8	411.6	323.6756285	318.5004131	476.7053215	403.8778168	M5_p20	0.542857143	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.133	373	0	0	NA	12qE	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.571761556	sgMsh2	cell line
chr12	24955384	24955384	T	C	ENSMUST00000110942.10	1	ENSMUSG00000020646	missense	V/A	386	Mboat2	ENSMUST00000110942.10:c.1157T>C	ENSMUSP00000106567.3:p.Val386Ala	H-2-Kb	9	5	7	LTFLTGALM	LTFLTGVLM	NetMHC	354.25	977.61	2.76	314	0.143	486.696	929.583	1.91	977.61	354.25	1440.3	432.5	780.0276543	540.8913049	881.5561915	650.5040428	M5_p20	1.857142857	1.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.145	314	0	0	NA	12qA1.3	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.623349065	sgMsh2	cell line
chr12	51999859	51999859	T	G	ENSMUST00000021339.7	1	ENSMUSG00000020956	missense	N/H	66	Dtd2	ENSMUST00000021339.7:c.196A>C	ENSMUSP00000021339.7:p.Asn66His	H-2-Kb	9	6	6	VNTLLHVKL	VNTLLNVKL	NetMHCpan	212.6	1257.5	5.915	74	0.216	402.088	1117.492	2.779	1647.25	460.42	1257.5	212.6	977.4847712	462.4981501	708.3534281	343.7557727	M5_p20	1.114285714	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.236	74	0	0	NA	12qC1	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr11	119436427	119436427	C	A	ENSMUST00000093902.11	5	ENSMUSG00000070327	missense	L/I	1748	Rnf213	ENSMUST00000093902.11:c.5242C>A	ENSMUSP00000091429.5:p.Leu1748Ile	H-2-Kb	9	6	6	IMMQSIVYM	IMMQSLVYM	NetMHCpan	229.8	181.2	0.789	122	0.131	384.492	252.183	0.656	330.56	519.93	181.2	229.8	248.9487787	396.378418	255.4171179	372.6061339	M5_p20	0.985714286	1.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.151	122	0	0	NA	11qE2	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	0.649142819	sgMsh2	cell line
chr13	75878849	75878849	T	G	ENSMUST00000022078.11	1	ENSMUSG00000021589	missense	K/N	468	Rhobtb3	ENSMUST00000022078.11:c.1404A>C	ENSMUSP00000022078.5:p.Lys468Asn	H-2-Db	9	7	5	YGVSNETFL	YGVSKETFL	NetMHC	4.07	552.12	135.656	217	0.249	38.329	1708.94	44.587	552.12	4.07	1286.7	11.1	2131.179353	65.55714019	2236.505652	66.61468828	M5_p20	0.328571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	217	0	0	NA	13qC1	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr14	3225359	3225359	TG	T	ENSMUST00000225885.1	NA	ENSMUSG00000096039	FS	L/X	15	D830030K20Rik	ENSMUST00000225885.1:c.46del	ENSMUSP00000153088.1:p.Glu16AsnfsTer8	H-2-Db	9	8	5	GGILNFTYM	NA	NetMHC	8.49	NA	NA	578	0.048	23.482	NA	NA	NA	8.49	NA	11.6	NA	38.42554182	NA	35.36470177	M5_p20	1.071428571	1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0484	578	0	0	NA	14qA1	chr14-3190453-4037583	3.70531048	2.70531048	1	0.97	4.169990295	NA	1	0.208069619	sgMsh2	cell line
chr12	119190648	119190648	C	T	ENSMUST00000026360.8	1	ENSMUSG00000025321	missense	C/Y	218	Itgb8	ENSMUST00000026360.8:c.653G>A	ENSMUSP00000026360.8:p.Cys218Tyr	H-2-Db	9	4	8	CSDYNLDYM	CSDYNLDCM	NetMHCpan	180.4	1458	8.082	156	0.173	201.211	1225.087	6.089	1341.97	254.97	1458	180.4	1108.204731	197.9793983	1001.313335	204.4419431	M5_p20	-1.057142857	-0.9	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.176	156	0	0	NA	12qF2	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.756616796	sgMsh2	cell line
chr12	111097527	111097527	T	A	ENSMUST00000116388.3	1	ENSMUSG00000037896	missense	F/I	87	Rcor1	ENSMUST00000116388.3:c.259T>A	ENSMUSP00000112089.3:p.Phe87Ile	H-2-Db	9	3	9	ADLPNFTPI	ADLPNFTPF	SMM	152.272	557.982	3.664	249	0.169	289.055	1381.294	4.779	4602.14	434.55	2076.2	395.9	557.9817569	152.2719818	686.3885023	182.2090736	M5_p20	0.528571429	0.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.183	249	0	0	NA	12qF1	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.786709509	sgMsh2	cell line
chr13	21754253	21754253	A	G	ENSMUST00000091709.2	NA	ENSMUSG00000095217	missense	K/R	44	H2bc15	ENSMUST00000091709.2:c.131A>G	ENSMUSP00000089301.2:p.Lys44Arg	H-2-Kb	8	6	6	SVYVYRVL	SVYVYKVL	NetMHC	4	6.66	1.665	176	0.261	7.033	12.062	1.715	6.66	4	7.5	5.5	17.69049561	8.565249141	16.6241711	9.051905263	M5_p20	1.328571429	1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.277	176	0	0	NA	13qA3.1	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr14	3225359	3225359	TG	T	ENSMUST00000225885.1	NA	ENSMUSG00000096039	FS	L/X	15	D830030K20Rik	ENSMUST00000225885.1:c.46del	ENSMUSP00000153088.1:p.Glu16AsnfsTer8	H-2-Kb	8	11	2	LNFTYMRI	NA	NetMHCpan	7.1	NA	NA	578	0.048	22.296	NA	NA	NA	10.65	NA	7.1	NA	37.21688324	NA	33.94220093	M5_p20	-0.114285714	-0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0484	578	0	0	NA	14qA1	chr14-3190453-4037583	3.70531048	2.70531048	1	0.97	4.169990295	NA	1	0.208069619	sgMsh2	cell line
chr12	117974938	117974938	G	A	ENSMUST00000084806.6	1	ENSMUSG00000018581	missense	A/V	3265	Dnah11	ENSMUST00000084806.6:c.9794C>T	ENSMUSP00000081867.6:p.Ala3265Val	H-2-Kb	8	7	5	KSFAVAGL	KSFAAAGL	NetMHC	11.66	16.83	1.443	154	0.175	23.502	30.038	1.278	16.83	11.66	34.2	31.4	28.6906244	22.52890066	31.38629122	24.47597495	M5_p20	1.885714286	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.175	154	0	0	NA	12qF2	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.752317837	sgMsh2	cell line
chr13	119455737	119455737	CT	C	ENSMUST00000026520.13	1	ENSMUSG00000025451	FS	F/X	353	Paip1	ENSMUST00000026520.13:c.1062del	ENSMUSP00000026520.7:p.Pro355GlnfsTer88	H-2-Kb	8	65	0	TSFFFFFF	NA	SMMPMBEC	29.562	NA	NA	113	0.186	48.105	NA	NA	NA	60.34	NA	73.9	NA	35.87071224	NA	29.56242117	M5_p20	2.285714286	2.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.168	113	0	0	NA	13qD2.3	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	0.722225123	sgMsh2	cell line
chr13	119455737	119455737	CT	C	ENSMUST00000026520.13	1	ENSMUSG00000025451	FS	F/X	353	Paip1	ENSMUST00000026520.13:c.1062del	ENSMUSP00000026520.7:p.Pro355GlnfsTer88	H-2-Kb	8	70	0	FFFFFFFL	NA	SMM	6.277	NA	NA	113	0.186	74.217	NA	NA	NA	140.16	NA	795.6	NA	6.276824703	NA	8.274466462	M5_p20	2.942857143	2.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.168	113	0	0	NA	13qD2.3	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	0.722225123	sgMsh2	cell line
chr13	54221267	54221267	TC	T	ENSMUST00000038101.3	1	ENSMUSG00000034987	FS	S/X	374	Hrh2	ENSMUST00000038101.3:c.1122del	ENSMUSP00000038170.3:p.Phe375SerfsTer53	H-2-Kb	8	26	0	SNHHYISV	NA	NetMHCpan	84.2	NA	NA	96	0.344	192.438	NA	NA	NA	148.97	NA	84.2	NA	235.9065504	NA	249.310173	M5_p20	-0.471428571	-0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.379	96	0	0	NA	13qB1	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	2	1	sgMsh2	cell line
chr13	119455737	119455737	CT	C	ENSMUST00000026520.13	1	ENSMUSG00000025451	FS	F/X	353	Paip1	ENSMUST00000026520.13:c.1062del	ENSMUSP00000026520.7:p.Pro355GlnfsTer88	H-2-Kb	8	66	0	SFFFFFFF	NA	SMM	56.33	NA	NA	113	0.186	127.006	NA	NA	NA	193.93	NA	806.2	NA	56.33003227	NA	60.08139392	M5_p20	2.8	2.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.168	113	0	0	NA	13qD2.3	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	0.722225123	sgMsh2	cell line
chr13	119455737	119455737	CT	C	ENSMUST00000026520.13	1	ENSMUSG00000025451	FS	F/X	353	Paip1	ENSMUST00000026520.13:c.1062del	ENSMUSP00000026520.7:p.Pro355GlnfsTer88	H-2-Kb	8	77	0	LKFRYGDL	NA	SMMPMBEC	103.452	NA	NA	113	0.186	175.557	NA	NA	NA	228.16	NA	542.1	NA	122.9532464	NA	103.4522641	M5_p20	-1	-1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.168	113	0	0	NA	13qD2.3	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	0.722225123	sgMsh2	cell line
chr14	3225359	3225359	TG	T	ENSMUST00000225885.1	NA	ENSMUSG00000096039	FS	L/X	15	D830030K20Rik	ENSMUST00000225885.1:c.46del	ENSMUSP00000153088.1:p.Glu16AsnfsTer8	H-2-Kb	8	9	4	GILNFTYM	NA	NetMHC	252.86	NA	NA	578	0.048	291.618	NA	NA	NA	252.86	NA	283.5	NA	390.6069803	NA	299.7367541	M5_p20	1.071428571	1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0484	578	0	0	NA	14qA1	chr14-3190453-4037583	3.70531048	2.70531048	1	0.97	4.169990295	NA	1	0.208069619	sgMsh2	cell line
chr13	22293541	22293541	T	C	ENSMUST00000228382.1	NA	ENSMUSG00000069295	missense	S/P	117	Vmn1r196	ENSMUST00000228382.1:c.349T>C	ENSMUSP00000154358.1:p.Ser117Pro	H-2-Kb	8	9	3	RAPWWGRL	RASWWGRL	NetMHCpan	195.9	896.8	4.578	288	0.264	341.715	1061.965	3.108	1423.61	271.58	896.8	195.9	1129.11974	421.444121	994.8096742	411.8508816	M5_p20	-0.385714286	-0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.263	288	0	0	NA	13qA3.1	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr13	116910900	116910900	A	G	ENSMUST00000022239.7	5	ENSMUSG00000021725	missense	L/P	251	Parp8	ENSMUST00000022239.7:c.752T>C	ENSMUSP00000022239.6:p.Leu251Pro	H-2-Kb	8	8	4	IVRPHCSL	IVRLHCSL	SMM	192.637	101.097	0.525	223	0.202	278.151	113.701	0.409	111.86	291	203	380.5	101.0974031	192.6371303	115.5420317	265.3016799	M5_p20	0.057142857	0.157142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.204	223	0	0	NA	13qD2.3	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	0.87698765	sgMsh2	cell line
chr13	119455737	119455737	CT	C	ENSMUST00000026520.13	1	ENSMUSG00000025451	FS	F/X	353	Paip1	ENSMUST00000026520.13:c.1062del	ENSMUSP00000026520.7:p.Pro355GlnfsTer88	H-2-Kb	8	67	0	FFFFFFFF	NA	SMM	102.033	NA	NA	113	0.186	315.835	NA	NA	NA	527.74	NA	4102.8	NA	102.0328459	NA	103.9297781	M5_p20	2.8	2.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.168	113	0	0	NA	13qD2.3	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	0.722225123	sgMsh2	cell line
chr13	119455737	119455737	CT	C	ENSMUST00000026520.13	1	ENSMUSG00000025451	FS	F/X	353	Paip1	ENSMUST00000026520.13:c.1062del	ENSMUSP00000026520.7:p.Pro355GlnfsTer88	H-2-Kb	8	68	0	FFFFFFFF	NA	SMM	102.033	NA	NA	113	0.186	315.835	NA	NA	NA	527.74	NA	4102.8	NA	102.0328459	NA	103.9297781	M5_p20	2.8	2.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.168	113	0	0	NA	13qD2.3	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	0.722225123	sgMsh2	cell line
chr13	119455737	119455737	CT	C	ENSMUST00000026520.13	1	ENSMUSG00000025451	FS	F/X	353	Paip1	ENSMUST00000026520.13:c.1062del	ENSMUSP00000026520.7:p.Pro355GlnfsTer88	H-2-Kb	8	69	0	FFFFFFFF	NA	SMM	102.033	NA	NA	113	0.186	315.835	NA	NA	NA	527.74	NA	4102.8	NA	102.0328459	NA	103.9297781	M5_p20	2.8	2.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.168	113	0	0	NA	13qD2.3	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	0.722225123	sgMsh2	cell line
chr13	119455737	119455737	CT	C	ENSMUST00000026520.13	1	ENSMUSG00000025451	FS	F/X	353	Paip1	ENSMUST00000026520.13:c.1062del	ENSMUSP00000026520.7:p.Pro355GlnfsTer88	H-2-Kb	8	72	0	FFFFFLKF	NA	SMMPMBEC	290.228	NA	NA	113	0.186	434.144	NA	NA	NA	548.59	NA	1959.2	NA	319.6980594	NA	290.2284617	M5_p20	1.985714286	1.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.168	113	0	0	NA	13qD2.3	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	0.722225123	sgMsh2	cell line
chr14	23436016	23436016	TA	T	ENSMUST00000188285.6	1	ENSMUSG00000063142	FS	Y/X	680	Kcnma1	ENSMUST00000188285.6:c.2038del	ENSMUSP00000140275.1:p.Tyr680ThrfsTer31	H-2-Kb	8	8	4	AFFTARPV	NA	SMM	285.588	NA	NA	69	0.217	464.476	NA	NA	NA	585.6	NA	996.8	NA	285.5880296	NA	343.3523309	M5_p20	0.685714286	0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.209	69	0	0	NA	14qA3	chr14-19751082-41183403	4	2	2	0.97	4.169990295	NA	1	0.898482445	sgMsh2	cell line
chr13	119455737	119455737	CT	C	ENSMUST00000026520.13	1	ENSMUSG00000025451	FS	F/X	353	Paip1	ENSMUST00000026520.13:c.1062del	ENSMUSP00000026520.7:p.Pro355GlnfsTer88	H-2-Kb	9	65	0	TSFFFFFFF	NA	SMM	30.769	NA	NA	113	0.186	42.356	NA	NA	NA	52.26	NA	101.5	NA	30.76876041	NA	32.4526376	M5_p20	2.8	2.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.168	113	0	0	NA	13qD2.3	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	0.722225123	sgMsh2	cell line
chr13	119455737	119455737	CT	C	ENSMUST00000026520.13	1	ENSMUSG00000025451	FS	F/X	353	Paip1	ENSMUST00000026520.13:c.1062del	ENSMUSP00000026520.7:p.Pro355GlnfsTer88	H-2-Kb	9	33	0	SMMRWTQKL	NA	NetMHC	70.92	NA	NA	113	0.186	147.628	NA	NA	NA	70.92	NA	74.4	NA	220.8564057	NA	227.1171867	M5_p20	-1.114285714	-0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.168	113	0	0	NA	13qD2.3	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	0.722225123	sgMsh2	cell line
chr13	67542395	67542395	TA	T	ENSMUST00000181892.8	1	ENSMUSG00000095432	FS	Y/X	249	Zfp748	ENSMUST00000181892.8:c.745del	ENSMUSP00000137928.1:p.Tyr249ThrfsTer47	H-2-Kb	9	44	0	VAMPFVHSI	NA	NetMHCpan	32.9	NA	NA	128	0.18	254.832	NA	NA	NA	98.41	NA	32.9	NA	411.2538721	NA	441.8247089	M5_p20	1.114285714	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.197	128	0	0	NA	13qB3	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	0.846894936	sgMsh2	cell line
chr13	54221267	54221267	TC	T	ENSMUST00000038101.3	1	ENSMUSG00000034987	FS	S/X	374	Hrh2	ENSMUST00000038101.3:c.1122del	ENSMUSP00000038170.3:p.Phe375SerfsTer53	H-2-Kb	9	26	0	SNHHYISVL	NA	NetMHCpan	68.7	NA	NA	96	0.344	178.271	NA	NA	NA	141.14	NA	68.7	NA	229.67303	NA	215.4021332	M5_p20	0.571428571	0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.379	96	0	0	NA	13qB1	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	2	1	sgMsh2	cell line
chr13	119455737	119455737	CT	C	ENSMUST00000026520.13	1	ENSMUSG00000025451	FS	F/X	353	Paip1	ENSMUST00000026520.13:c.1062del	ENSMUSP00000026520.7:p.Pro355GlnfsTer88	H-2-Kb	9	66	0	SFFFFFFFF	NA	SMM	43.262	NA	NA	113	0.186	103.032	NA	NA	NA	146.05	NA	710.2	NA	43.26233939	NA	60.01364431	M5_p20	2.8	2.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.168	113	0	0	NA	13qD2.3	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	0.722225123	sgMsh2	cell line
chr12	118008803	118008803	A	G	ENSMUST00000084806.6	1	ENSMUSG00000018581	missense	F/S	2882	Dnah11	ENSMUST00000084806.6:c.8645T>C	ENSMUSP00000081867.6:p.Phe2882Ser	H-2-Kb	9	10	2	VSLLTDAHV	VFLLTDAHV	NetMHC	151.93	528.66	3.48	496	0.143	432.793	838.709	1.938	528.66	151.93	3378.6	1196.3	713.0336075	385.5760057	964.3840079	480.0096849	M5_p20	0.885714286	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.149	496	0	0	NA	12qF2	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.640544901	sgMsh2	cell line
chr13	75878849	75878849	T	G	ENSMUST00000022078.11	1	ENSMUSG00000021589	missense	K/N	468	Rhobtb3	ENSMUST00000022078.11:c.1404A>C	ENSMUSP00000022078.5:p.Lys468Asn	H-2-Kb	9	10	2	SNETFLSFL	SKETFLSFL	NetMHC	152.36	2784.6	18.276	217	0.249	305.223	2383.314	7.808	2784.6	152.36	3434.7	227.4	1982.028979	421.8033261	1691.414308	383.0451784	M5_p20	1.171428571	1.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	217	0	0	NA	13qC1	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr13	119455737	119455737	CT	C	ENSMUST00000026520.13	1	ENSMUSG00000025451	FS	F/X	353	Paip1	ENSMUST00000026520.13:c.1062del	ENSMUSP00000026520.7:p.Pro355GlnfsTer88	H-2-Kb	9	69	0	FFFFFFFFL	NA	SMM	39.547	NA	NA	113	0.186	102.645	NA	NA	NA	154.21	NA	682.5	NA	39.54667729	NA	51.07989549	M5_p20	2.942857143	2.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.168	113	0	0	NA	13qD2.3	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	0.722225123	sgMsh2	cell line
chr12	119208553	119208553	T	C	ENSMUST00000026360.8	1	ENSMUSG00000025321	missense	Q/R	60	Itgb8	ENSMUST00000026360.8:c.179A>G	ENSMUSP00000026360.8:p.Gln60Arg	H-2-Kb	9	4	8	VSCARCLRL	VSCARCLQL	SMMPMBEC	122.815	130.092	1.059	321	0.15	197.912	280.768	1.419	265.66	168.78	517	335	295.876178	227.0439846	130.0918231	122.8146005	M5_p20	0.771428571	1.357142857	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.153	321	0	0	NA	12qF2	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.657740737	sgMsh2	cell line
chr14	8253530	8253530	C	A	ENSMUST00000164598.7	1	ENSMUSG00000021751	missense	A/S	206	Acox2	ENSMUST00000164598.7:c.616G>T	ENSMUSP00000126464.1:p.Ala206Ser	H-2-Kb	9	8	4	VVLSHLICL	VVLAHLICL	SMM	100.719	166.383	1.652	126	0.27	162.661	236.642	1.455	331.13	202.79	306.9	222.8	166.383402	100.7186741	156.4047722	122.5321348	M5_p20	2.057142857	2.357142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.278	126	0	0	NA	14qA1	chr14-7548571-19566630	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr13	119455737	119455737	CT	C	ENSMUST00000026520.13	1	ENSMUSG00000025451	FS	F/X	353	Paip1	ENSMUST00000026520.13:c.1062del	ENSMUSP00000026520.7:p.Pro355GlnfsTer88	H-2-Kb	9	26	0	VTHIWMISM	NA	NetMHCpan	210.8	NA	NA	113	0.186	240.649	NA	NA	NA	242.38	NA	210.8	NA	278.6826939	NA	238.9186213	M5_p20	1.128571429	1.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.168	113	0	0	NA	13qD2.3	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	0.722225123	sgMsh2	cell line
chr13	119455737	119455737	CT	C	ENSMUST00000026520.13	1	ENSMUSG00000025451	FS	F/X	353	Paip1	ENSMUST00000026520.13:c.1062del	ENSMUSP00000026520.7:p.Pro355GlnfsTer88	H-2-Kb	9	71	0	FFFFFFLKF	NA	SMMPMBEC	70.024	NA	NA	113	0.186	168.803	NA	NA	NA	265.31	NA	1611.5	NA	72.29528931	NA	70.02449734	M5_p20	1.985714286	2.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.168	113	0	0	NA	13qD2.3	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	0.722225123	sgMsh2	cell line
chr12	116318844	116318844	A	C	ENSMUST00000100986.3	1	ENSMUSG00000021171	missense	E/A	138	Esyt2	ENSMUST00000100986.3:c.413A>C	ENSMUSP00000098548.2:p.Glu138Ala	H-2-Kb	9	5	7	FICQFIAKL	FICQFIEKL	NetMHC	274.03	1858.1	6.781	326	0.181	434.65	1868.7	4.299	1858.1	274.03	1879.3	413	1888.469608	820.5593529	1023.882217	456.2995075	M5_p20	1.142857143	2.2	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.177	326	0	0	NA	12qF2	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.760915755	sgMsh2	cell line
chr12	111678648	111678648	A	G	ENSMUST00000084947.9	1	ENSMUSG00000060950	missense	Y/C	6	Trmt61a	ENSMUST00000084947.9:c.17A>G	ENSMUSP00000082011.3:p.Tyr6Cys	H-2-Kb	9	1	6	MSFVACEEL	MSFVAYEEL	NetMHCpan	242.1	23.8	0.098	186	0.118	359.464	57.617	0.16	18.72	290.27	23.8	242.1	91.43448014	428.6570788	121.6886295	527.5334467	M5_p20	1.157142857	1.271428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.143	186	0	0	NA	12qF1	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.614751147	sgMsh2	cell line
chr14	29170631	29170631	A	T	ENSMUST00000022567.8	1	ENSMUSG00000021991	missense	F/Y	418	Cacna2d3	ENSMUST00000022567.8:c.1253T>A	ENSMUSP00000022567.7:p.Phe418Tyr	H-2-Kb	9	6	6	ANKGFYTQI	ANKGFFTQI	NetMHCpan	153.5	133	0.866	176	0.153	222.545	313.745	1.41	417.88	298.99	133	153.5	384.6892055	273.5961615	242.8007366	171.4944225	M5_p20	-0.357142857	-0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.168	176	0	0	NA	14qA3	chr14-19751082-41183403	4	2	2	0.97	4.169990295	NA	1	0.722225123	sgMsh2	cell line
chr13	119455737	119455737	CT	C	ENSMUST00000026520.13	1	ENSMUSG00000025451	FS	F/X	353	Paip1	ENSMUST00000026520.13:c.1062del	ENSMUSP00000026520.7:p.Pro355GlnfsTer88	H-2-Kb	9	67	0	FFFFFFFFF	NA	SMM	66.698	NA	NA	113	0.186	203.329	NA	NA	NA	318.3	NA	2645.3	NA	66.69756823	NA	88.35883884	M5_p20	2.8	2.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.168	113	0	0	NA	13qD2.3	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	0.722225123	sgMsh2	cell line
chr13	119455737	119455737	CT	C	ENSMUST00000026520.13	1	ENSMUSG00000025451	FS	F/X	353	Paip1	ENSMUST00000026520.13:c.1062del	ENSMUSP00000026520.7:p.Pro355GlnfsTer88	H-2-Kb	9	68	0	FFFFFFFFF	NA	SMM	66.698	NA	NA	113	0.186	203.329	NA	NA	NA	318.3	NA	2645.3	NA	66.69756823	NA	88.35883884	M5_p20	2.8	2.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.168	113	0	0	NA	13qD2.3	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	0.722225123	sgMsh2	cell line
chr13	75878849	75878849	T	G	ENSMUST00000022078.11	1	ENSMUSG00000021589	missense	K/N	468	Rhobtb3	ENSMUST00000022078.11:c.1404A>C	ENSMUSP00000022078.5:p.Lys468Asn	H-2-Kb	9	9	3	VSNETFLSF	VSKETFLSF	SMM	343.645	425.706	1.239	217	0.249	405.045	443.114	1.094	688.38	363.15	407.4	540.2	425.7062242	343.6449768	460.5215948	446.9407979	M5_p20	0.128571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	217	0	0	NA	13qC1	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr13	119455737	119455737	CT	C	ENSMUST00000026520.13	1	ENSMUSG00000025451	FS	F/X	353	Paip1	ENSMUST00000026520.13:c.1062del	ENSMUSP00000026520.7:p.Pro355GlnfsTer88	H-2-Kb	10	65	0	TSFFFFFFFF	NA	SMMPMBEC	302.594	NA	NA	113	0.186	465.228	NA	NA	NA	342.52	NA	804.4	NA	587.9359278	NA	302.5937824	M5_p20	2.8	2.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.168	113	0	0	NA	13qD2.3	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	0.722225123	sgMsh2	cell line
chr13	119455737	119455737	CT	C	ENSMUST00000026520.13	1	ENSMUSG00000025451	FS	F/X	353	Paip1	ENSMUST00000026520.13:c.1062del	ENSMUSP00000026520.7:p.Pro355GlnfsTer88	H-2-Kb	10	66	0	SFFFFFFFFF	NA	SMMPMBEC	275.969	NA	NA	113	0.186	487.086	NA	NA	NA	606.61	NA	3527.5	NA	367.5614871	NA	275.9688094	M5_p20	2.8	2.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.168	113	0	0	NA	13qD2.3	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	0.722225123	sgMsh2	cell line
chr14	45614188	45614188	T	C	ENSMUST00000087320.12	1	ENSMUSG00000037697	missense	Y/C	511	Ddhd1	ENSMUST00000087320.12:c.1532A>G	ENSMUSP00000084577.5:p.Tyr511Cys	H-2-Kb	8	8	4	IMYCTSPL	IMYYTSPL	NetMHC	11.28	6.72	0.596	265	0.211	26.327	19.907	0.756	6.72	11.28	8.5	16.2	35.54184757	37.30267702	31.31410475	36.45356443	M5_p20	0.542857143	0.642857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.216	265	0	0	NA	14qC1	chr14-43673573-52852156	4	2	2	0.97	4.169990295	NA	1	0.928575158	sgMsh2	cell line
chr14	29988224	29988224	G	T	ENSMUST00000224797.1	NA	ENSMUSG00000015971	missense	R/M	316	Actr8	ENSMUST00000224797.1:c.947G>T	ENSMUSP00000153076.1:p.Arg316Met	H-2-Kb	8	9	3	VSMCFYWL	VSRCFYWL	NetMHCpan	18	44.3	2.461	161	0.248	18.823	33.596	1.785	38.96	18.69	44.3	18	19.57672319	18.95570756	28.23189304	19.26371303	M5_p20	1.142857143	1.2	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.26	161	0	0	NA	14qB	chr14-19751082-41183403	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr14	52036009	52036009	A	G	ENSMUST00000214071.1	5	ENSMUSG00000044286	missense	M/T	34	Olfr221	ENSMUST00000214071.1:c.101T>C	ENSMUSP00000150675.1:p.Met34Thr	H-2-Kb	8	10	2	VTYAITVL	VMYAITVL	NetMHCpan	26.2	23.8	0.908	128	0.195	60.149	92.464	1.537	54.39	47.73	23.8	26.2	137.3219621	75.63799359	130.5389154	72.56713881	M5_p20	1.657142857	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.202	128	0	0	NA	14qC2	chr14-43673573-52852156	4	2	2	0.97	4.169990295	NA	1	0.868389731	sgMsh2	cell line
chr14	65975611	65975611	T	G	ENSMUST00000022616.13	1	ENSMUSG00000022037	missense	F/V	149	Clu	ENSMUST00000022616.13:c.445T>G	ENSMUSP00000022616.6:p.Phe149Val	H-2-Kb	8	8	4	SSPVYFWM	SSPFYFWM	NetMHCpan	60.6	40.4	0.667	123	0.276	147.752	201.93	1.367	223.25	116.55	40.4	60.6	180.6092545	178.9534189	234.2825811	206.8902384	M5_p20	0.614285714	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.298	123	0	0	NA	14qD1	chr14-53336808-123291781	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr14	30565598	30565598	A	C	ENSMUST00000022529.7	1	ENSMUSG00000021957	missense	D/A	183	Tkt	ENSMUST00000022529.7:c.548A>C	ENSMUSP00000022529.6:p.Asp183Ala	H-2-Kb	8	8	4	AIFAINRL	AIFDINRL	NetMHCpan	63.2	123.2	1.949	113	0.204	133.004	297.159	2.234	429.52	121.55	123.2	63.2	314.5864409	164.7175978	279.7306149	144.4574685	M5_p20	1.342857143	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.209	113	0	0	NA	14qB	chr14-19751082-41183403	4	2	2	0.97	4.169990295	NA	1	0.898482445	sgMsh2	cell line
chr14	123515710	123515710	C	A	ENSMUST00000000201.6	5	ENSMUSG00000000197	missense	R/I	288	Nalcn	ENSMUST00000000201.6:c.863G>T	ENSMUSP00000000201.5:p.Arg288Ile	H-2-Kb	8	6	6	VFLMYIAI	VFLMYRAI	SMM	80.675	70.265	0.871	186	0.333	117.27	70.672	0.603	62.95	152.93	94.9	239.3	70.26515361	80.67519058	71.07878574	81.60936526	M5_p20	2.571428571	2.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.322	186	0	0	NA	14qE5	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	sgMsh2	cell line
chr14	66004100	66004100	T	A	ENSMUST00000059970.8	1	ENSMUSG00000034450	missense	H/L	103	Gulo	ENSMUST00000059970.8:c.308A>T	ENSMUSP00000060912.7:p.His103Leu	H-2-Kb	8	11	1	LGLALSNL	HGLALSNL	NetMHC	204.75	1235.08	6.032	125	0.28	230.187	887.134	3.854	1235.08	204.75	1375.1	217.3	539.1877292	243.0748352	512.5544401	245.8895091	M5_p20	1.214285714	1.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.276	125	0	0	NA	14qD1	chr14-53336808-123291781	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr15	3325898	3325898	C	A	ENSMUST00000069451.10	1	ENSMUSG00000055737	missense	R/M	301	Ghr	ENSMUST00000069451.10:c.902G>T	ENSMUSP00000069457.4:p.Arg301Met	H-2-Kb	8	4	8	VIFSKQQM	VIFSKQQR	NetMHCpan	188.2	12750.8	67.751	247	0.372	363.498	6741.575	18.546	9458.39	228.41	12750.8	188.2	2790.872523	500.8872766	4024.76011	498.5859086	M5_p20	-0.357142857	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.369	247	0	0	NA	15qA1	chr15-3279130-67114084	5	3	2	0.97	4.169990295	NA	2	1	sgMsh2	cell line
chr14	108912776	108912776	T	C	ENSMUST00000100322.3	NA	ENSMUSG00000075478	missense	T/A	168	Slitrk1	ENSMUST00000100322.3:c.502A>G	ENSMUSP00000097897.2:p.Thr168Ala	H-2-Kb	8	9	3	ISALPANV	ISTLPANV	SMM	194.868	217.641	1.117	71	0.169	278.341	278.464	1	284.82	287.07	1132.8	711.5	217.6406428	194.8677632	272.1071791	269.6124854	M5_p20	0.814285714	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.208	71	0	0	NA	14qE3	chr14-53336808-123291781	4	2	2	0.97	4.169990295	NA	1	0.894183486	sgMsh2	cell line
chr14	110750419	110750419	GT	G	ENSMUST00000078386.3	1	ENSMUSG00000045871	FS	T/X	619	Slitrk6	ENSMUST00000078386.3:c.1855del	ENSMUSP00000077492.2:p.Thr619LeufsTer25	H-2-Kb	8	8	4	VFILLYSV	NA	SMM	324.146	NA	NA	122	0.139	444.036	NA	NA	NA	474.32	NA	1041.2	NA	324.1455024	NA	413.7518989	M5_p20	2.428571429	2.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.152	122	0	0	NA	14qE3	chr14-53336808-123291781	4	2	2	0.97	4.169990295	NA	1	0.653441778	sgMsh2	cell line
chr14	110750419	110750419	GT	G	ENSMUST00000078386.3	1	ENSMUSG00000045871	FS	T/X	619	Slitrk6	ENSMUST00000078386.3:c.1855del	ENSMUSP00000077492.2:p.Thr619LeufsTer25	H-2-Kb	8	5	7	LLIVFILL	LLIVFITI	SMMPMBEC	186.526	1017.982	5.458	122	0.139	388.485	1820.828	4.687	3883.8	517.11	2050.4	1179.4	1591.255801	259.8603386	1017.981768	186.5262676	M5_p20	3.914285714	3.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.152	122	0	0	NA	14qE3	chr14-53336808-123291781	4	2	2	0.97	4.169990295	NA	1	0.653441778	sgMsh2	cell line
chr15	16823315	16823315	CA	C	ENSMUST00000228307.1	NA	ENSMUSG00000025370	FS	K/X	128	Cdh9	ENSMUST00000228307.1:c.383del	ENSMUSP00000154022.1:p.Lys128ArgfsTer3	H-2-Kb	9	4	8	SLYILRARL	SLYILRAKA	NetMHC	34.72	2987.65	86.05	166	0.163	138.433	2844.375	20.547	2987.65	34.72	2701.1	48.7	4386.417848	267.9847002	2662.257137	228.165512	M5_p20	0.514285714	1.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.167	166	0	0	NA	15qA2	chr15-3279130-67114084	5	3	2	0.97	4.169990295	NA	1	0.717926164	sgMsh2	cell line
chr14	121238629	121238629	G	T	ENSMUST00000026635.7	5	ENSMUSG00000025555	missense	S/I	286	Farp1	ENSMUST00000026635.7:c.857G>T	ENSMUSP00000026635.6:p.Ser286Ile	H-2-Kb	9	9	3	VNISYQDTL	VNSSYQDTL	NetMHC	52.53	521.07	9.919	106	0.208	110.471	549.749	4.976	521.07	52.53	795.6	79	475.4556362	141.9416992	578.428922	179.1636906	M5_p20	-0.214285714	-0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.199	106	0	0	NA	14qE5	chr14-53336808-123291781	4	2	2	0.97	4.169990295	NA	1	0.855492854	sgMsh2	cell line
chr14	29988224	29988224	G	T	ENSMUST00000224797.1	NA	ENSMUSG00000015971	missense	R/M	316	Actr8	ENSMUST00000224797.1:c.947G>T	ENSMUSP00000153076.1:p.Arg316Met	H-2-Kb	9	9	3	VSMCFYWLM	VSRCFYWLM	SMM	22.086	32.742	1.483	161	0.248	24.996	45.085	1.804	100.09	57.04	51.6	26.1	32.74236157	22.08564057	38.57003207	23.89186213	M5_p20	1.528571429	1.528571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.26	161	0	0	NA	14qB	chr14-19751082-41183403	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr14	56043442	56043442	T	C	ENSMUST00000015576.5	1	ENSMUSG00000022226	missense	F/L	96	Mcpt2	ENSMUST00000015576.5:c.286T>C	ENSMUSP00000015576.4:p.Phe96Leu	H-2-Kb	9	11	1	LVHPKFQYL	FVHPKFQYL	NetMHC	82.4	100.78	1.223	144	0.285	171.976	196.191	1.141	100.78	82.4	149.1	107.3	243.2820126	236.6519024	295.2908568	257.1875847	M5_p20	-0.985714286	-0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.286	144	0	0	NA	14qC3	chr14-53336808-123291781	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr15	3325898	3325898	C	A	ENSMUST00000069451.10	1	ENSMUSG00000055737	missense	R/M	301	Ghr	ENSMUST00000069451.10:c.902G>T	ENSMUSP00000069457.4:p.Arg301Met	H-2-Kb	9	4	8	VIFSKQQMI	VIFSKQQRI	NetMHC	128.02	112.77	0.881	247	0.372	167.824	129.667	0.773	112.77	128.02	141	229.5	118.334124	147.6080354	149.021867	188.039895	M5_p20	-0.357142857	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.369	247	0	0	NA	15qA1	chr15-3279130-67114084	5	3	2	0.97	4.169990295	NA	2	1	sgMsh2	cell line
chr14	57480701	57480701	T	C	ENSMUST00000122063.7	1	ENSMUSG00000040040	missense	M/T	577	Ift88	ENSMUST00000122063.7:c.1730T>C	ENSMUSP00000113768.1:p.Met577Thr	H-2-Kb	9	5	7	QAIEWLTQL	QAIEWLMQL	NetMHC	144.21	130.29	0.903	318	0.123	232.952	219.487	0.942	130.29	144.21	188.3	221.5	250.6744092	244.4049514	289.2344371	260.7654204	M5_p20	0.5	0.5	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.125	318	0	0	NA	14qC3	chr14-53336808-123291781	4	2	2	0.97	4.169990295	NA	1	0.537369883	sgMsh2	cell line
chr14	110750419	110750419	GT	G	ENSMUST00000078386.3	1	ENSMUSG00000045871	FS	T/X	619	Slitrk6	ENSMUST00000078386.3:c.1855del	ENSMUSP00000077492.2:p.Thr619LeufsTer25	H-2-Kb	9	7	5	IVFILLYSV	NA	NetMHC	166.93	NA	NA	122	0.139	256.064	NA	NA	NA	166.93	NA	455.7	NA	248.9487787	NA	263.1782532	M5_p20	2.428571429	3.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.152	122	0	0	NA	14qE3	chr14-53336808-123291781	4	2	2	0.97	4.169990295	NA	1	0.653441778	sgMsh2	cell line
chr14	30565598	30565598	A	C	ENSMUST00000022529.7	1	ENSMUSG00000021957	missense	D/A	183	Tkt	ENSMUST00000022529.7:c.548A>C	ENSMUSP00000022529.6:p.Asp183Ala	H-2-Kb	9	7	5	VAIFAINRL	VAIFDINRL	NetMHCpan	105.3	537.5	5.104	113	0.204	203.936	485.56	2.381	877.91	173.39	537.5	105.3	433.6206938	234.4822647	361.6179668	276.8534884	M5_p20	1.342857143	2.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.209	113	0	0	NA	14qB	chr14-19751082-41183403	4	2	2	0.97	4.169990295	NA	1	0.898482445	sgMsh2	cell line
chr14	56761852	56761852	A	C	ENSMUST00000022507.12	1	ENSMUSG00000021938	missense	L/V	316	Pspc1	ENSMUST00000022507.12:c.946T>G	ENSMUSP00000022507.5:p.Leu316Val	H-2-Kb	9	11	1	VMLMRQDLM	LMLMRQDLM	SMM	117.249	337.373	2.877	143	0.357	170.678	505.031	2.959	672.69	215.68	1505.6	463.1	337.3727491	117.2492302	325.2744865	125.6753201	M5_p20	-0.014285714	0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.333	143	0	0	NA	14qC3	chr14-53336808-123291781	4	2	2	0.97	4.169990295	NA	2	1	sgMsh2	cell line
chr14	123515710	123515710	C	A	ENSMUST00000000201.6	5	ENSMUSG00000000197	missense	R/I	288	Nalcn	ENSMUST00000000201.6:c.863G>T	ENSMUSP00000000201.5:p.Arg288Ile	H-2-Kb	9	5	7	WVFLMYIAI	WVFLMYRAI	SMM	126.506	178.694	1.413	186	0.333	190.437	187.572	0.985	117.77	251.38	308	1796.8	178.6940122	126.5056726	196.4490803	129.4941055	M5_p20	2.571428571	2.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.322	186	0	0	NA	14qE5	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	sgMsh2	cell line
chr14	34594872	34594872	T	C	ENSMUST00000022331.2	1	ENSMUSG00000021799	missense	Y/C	320	Opn4	ENSMUST00000022331.2:c.959A>G	ENSMUSP00000022331.2:p.Tyr320Cys	H-2-Kb	9	6	6	VAFAGCSHI	VAFAGYSHI	NetMHCpan	125.5	15.8	0.126	127	0.299	316.575	52.299	0.165	26.39	294.11	15.8	125.5	87.5205423	410.3080144	78.20778752	339.0392667	M5_p20	1.028571429	1.7	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.305	127	0	0	NA	14qB	chr14-19751082-41183403	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr14	50453867	50453867	G	T	ENSMUST00000214792.1	5	ENSMUSG00000095917	missense	A/S	272	Olfr740	ENSMUST00000214792.1:c.814G>T	ENSMUSP00000148916.1:p.Ala272Ser	H-2-Kb	9	11	1	SGMQKLVTL	AGMQKLVTL	NetMHCpan	247.6	429.1	1.733	242	0.136	423.556	718.749	1.697	707.62	313.47	429.1	247.6	968.523137	625.3310593	729.8775406	533.6419961	M5_p20	0.8	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.146	242	0	0	NA	14qC1	chr14-43673573-52852156	4	2	2	0.97	4.169990295	NA	1	0.627648024	sgMsh2	cell line
chr14	52036009	52036009	A	G	ENSMUST00000214071.1	5	ENSMUSG00000044286	missense	M/T	34	Olfr221	ENSMUST00000214071.1:c.101T>C	ENSMUSP00000150675.1:p.Met34Thr	H-2-Kb	9	6	6	VVFLVTYAI	VVFLVMYAI	NetMHC	404.46	257.9	0.638	128	0.195	474.826	410.59	0.865	257.9	404.46	656.7	462	397.2921646	487.6519891	423.8869047	600.1364431	M5_p20	2.157142857	2.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.202	128	0	0	NA	14qC2	chr14-43673573-52852156	4	2	2	0.97	4.169990295	NA	1	0.868389731	sgMsh2	cell line
chr14	47529305	47529305	A	G	ENSMUST00000043112.8	1	ENSMUSG00000037536	missense	S/G	92	Fbxo34	ENSMUST00000043112.8:c.274A>G	ENSMUSP00000044675.7:p.Ser92Gly	H-2-Kb	9	10	2	AGYMKPTVL	ASYMKPTVL	NetMHCpan	263.9	100	0.379	134	0.231	439.278	144.033	0.328	140.75	488.39	100	263.9	180.7631913	518.9314595	147.3160278	390.1665199	M5_p20	0.342857143	0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.221	134	0	0	NA	14qC1	chr14-43673573-52852156	4	2	2	0.97	4.169990295	NA	1	0.950069954	sgMsh2	cell line
chr14	45614188	45614188	T	C	ENSMUST00000087320.12	1	ENSMUSG00000037697	missense	Y/C	511	Ddhd1	ENSMUST00000087320.12:c.1532A>G	ENSMUSP00000084577.5:p.Tyr511Cys	H-2-Kb	9	8	4	IMYCTSPLY	IMYYTSPLY	SMM	100.487	72.629	0.723	265	0.211	436.085	328.486	0.753	479.86	649.71	1452	1280.4	72.6289892	100.4870276	177.1128208	222.4590099	M5_p20	0.085714286	0.642857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.216	265	0	0	NA	14qC1	chr14-43673573-52852156	4	2	2	0.97	4.169990295	NA	1	0.928575158	sgMsh2	cell line
chr14	50299113	50299113	A	C	ENSMUST00000216195.1	5	ENSMUSG00000090874	missense	N/K	65	Olfr733	ENSMUST00000216195.1:c.195T>G	ENSMUSP00000149807.1:p.Asn65Lys	H-2-Kb	9	4	8	PLYLFLGKL	PLYLFLGNL	SMMPMBEC	240.021	202.418	0.843	164	0.213	452.95	205.059	0.453	207.7	659.8	370.2	842.8	162.5960534	246.0990856	202.4184057	240.0214196	M5_p20	1.228571429	1.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.217	164	0	0	NA	14qC1	chr14-43673573-52852156	4	2	2	0.97	4.169990295	NA	1	0.932874117	sgMsh2	cell line
chr16	16673096	16673096	T	C	ENSMUST00000206365.2	3	ENSMUSG00000048101	missense	K/R	295	Olfr19	ENSMUST00000206365.2:c.884A>G	ENSMUSP00000145655.2:p.Lys295Arg	H-2-Db	9	6	6	YSLRNRDLM	YSLRNKDLM	NetMHC	3.3	4.46	1.352	154	0.273	5.853	8.806	1.505	4.46	3.3	5.9	4.6	11.71170164	7.105914866	14.27479894	9.496640546	M5_p20	-0.928571429	-0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.306	154	0	0	NA	16qA3	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr15	75597834	75597834	A	G	ENSMUST00000023243.10	1	ENSMUSG00000022579	missense	T/A	133	Gpihbp1	ENSMUST00000023243.10:c.397A>G	ENSMUSP00000023243.4:p.Thr133Ala	H-2-Db	9	10	2	SALCNIPPW	STLCNIPPW	SMMPMBEC	43.709	249.787	5.715	111	0.288	85.973	425.163	4.945	1274.99	88.65	308.8	114.3	541.5268566	83.29520473	249.7870966	43.70891238	M5_p20	0.457142857	0.957142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.278	111	0	0	NA	15qD3	chr15-68084012-85707006	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr16	3592590	3592590	A	G	ENSMUST00000216259.1	5	ENSMUSG00000051003	missense	S/G	65	Olfr161	ENSMUST00000216259.1:c.193A>G	ENSMUSP00000150825.1:p.Ser65Gly	H-2-Db	9	8	4	FFLGNLSFV	FFLSNLSFV	SMM	191.699	80.282	0.419	236	0.242	456.264	114.023	0.25	99.94	647.94	502	1445.2	80.28233585	191.6990674	128.1061561	264.5879126	M5_p20	1.414285714	1.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.247	236	0	0	NA	16qA1	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	sgMsh2	cell line
chr16	31944927	31944927	T	G	ENSMUST00000052174.2	1	ENSMUSG00000045625	missense	F/V	268	Pigz	ENSMUST00000052174.2:c.802T>G	ENSMUSP00000057509.2:p.Phe268Val	H-2-Kb	8	9	3	ANVLYYNL	ANFLYYNL	NetMHC	7.37	2.69	0.365	151	0.179	17.766	2.966	0.167	2.69	7.37	3.4	11	2.64691503	24.5323979	3.241455024	28.29697428	M5_p20	0.314285714	0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.193	151	0	0	NA	16qB2	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	0.8296991	sgMsh2	cell line
chr16	3592590	3592590	A	G	ENSMUST00000216259.1	5	ENSMUSG00000051003	missense	S/G	65	Olfr161	ENSMUST00000216259.1:c.193A>G	ENSMUSP00000150825.1:p.Ser65Gly	H-2-Kb	8	6	6	MYFFLGNL	MYFFLSNL	NetMHCpan	34	14.7	0.432	236	0.242	89.071	59.088	0.663	49.51	88.66	14.7	34	68.66572344	89.4828896	80.11982647	98.3422182	M5_p20	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.247	236	0	0	NA	16qA1	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	sgMsh2	cell line
chr16	59303332	59303332	CT	C	ENSMUST00000215893.1	5	ENSMUSG00000068182	FS	F/X	60	Olfr203	ENSMUST00000215893.1:c.182del	ENSMUSP00000149906.1:p.Phe61SerfsTer5	H-2-Kb	8	6	7	HTPMYFSL	HTPMYFFL	NetMHCpan	81	117.9	1.456	535	0.243	132.528	176.956	1.335	197.23	91.38	117.9	81	194.4195797	228.4230889	159.4924025	173.6760767	M5_p20	0.585714286	0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.232	535	0	0	NA	16qC1.3	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	0.997358503	sgMsh2	cell line
chr16	58926453	58926453	T	C	ENSMUST00000205986.3	2	ENSMUSG00000090951	missense	I/M	39	Olfr181	ENSMUST00000205986.3:c.117A>G	ENSMUSP00000145877.2:p.Ile39Met	H-2-Kb	8	5	7	AIYLVTMV	AIYLVTIV	NetMHC	143.87	786.44	5.466	505	0.24	259.507	804.095	3.099	786.44	143.87	1131.3	680.2	620.4974485	238.6382195	821.7505435	280.3754606	M5_p20	2.371428571	2.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.248	505	0	0	NA	16qC1.3	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr15	98543729	98543729	A	C	ENSMUST00000169707.7	1	ENSMUSG00000011960	missense	L/V	553	Ccnt1	ENSMUST00000169707.7:c.1657T>G	ENSMUSP00000126874.1:p.Leu553Val	H-2-Kb	8	11	1	VAHKTYSL	LAHKTYSL	NetMHC	166.83	1240.91	7.438	176	0.148	441.392	1893.108	4.289	1240.91	166.83	1063.5	270.8	3294.124431	651.2383991	2545.305993	611.9839043	M5_p20	-0.614285714	-0.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.178	176	0	0	NA	15qF1	chr15-85707064-102454328	5	3	2	0.97	4.169990295	NA	1	0.765214714	sgMsh2	cell line
chr15	66948408	66948408	A	G	ENSMUST00000005256.13	1	ENSMUSG00000005125	missense	I/T	59	Ndrg1	ENSMUST00000005256.13:c.176T>C	ENSMUSP00000005256.6:p.Ile59Thr	H-2-Kb	8	10	2	VTLTYHDI	VILTYHDI	NetMHCpan	127.6	181.9	1.426	163	0.147	171.099	174.698	1.021	166.94	186.77	181.9	127.6	172.0838049	172.0838049	177.3127641	170.1139779	M5_p20	-0.157142857	-0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.136	163	0	0	NA	15qD2	chr15-3279130-67114084	5	3	2	0.97	4.169990295	NA	1	0.584658433	sgMsh2	cell line
chr16	44216308	44216308	C	A	ENSMUST00000119746.7	5	ENSMUSG00000068284	missense	P/T	384	Usf3	ENSMUST00000119746.7:c.1150C>A	ENSMUSP00000112620.1:p.Pro384Thr	H-2-Kb	8	8	4	STLTVSSL	STLPVSSL	SMM	168.943	283.622	1.679	135	0.222	203.876	394.379	1.934	526.3	204.17	378.8	262.7	283.6220554	168.9429215	409.9585987	203.5822922	M5_p20	1.257142857	1.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	135	0	0	NA	16qB4	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr15	100190056	100190056	T	C	ENSMUST00000100203.9	1	ENSMUSG00000023026	missense	V/A	957	Dip2b	ENSMUST00000100203.9:c.2870T>C	ENSMUSP00000097777.3:p.Val957Ala	H-2-Kb	8	7	5	ASVMAGNL	ASVMVGNL	NetMHC	249.4	155.85	0.625	263	0.171	304.177	234.725	0.772	155.85	249.4	254.3	361	261.0597994	332.4604589	215.149331	275.892567	M5_p20	1	1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.183	263	0	0	NA	15qF1	chr15-85707064-102454328	5	3	2	0.97	4.169990295	NA	1	0.786709509	sgMsh2	cell line
chr16	31944927	31944927	T	G	ENSMUST00000052174.2	1	ENSMUSG00000045625	missense	F/V	268	Pigz	ENSMUST00000052174.2:c.802T>G	ENSMUSP00000057509.2:p.Phe268Val	H-2-Kb	8	4	8	VFLTPANV	VFLTPANF	SMM	146.805	667.944	4.55	151	0.179	241.255	718.651	2.979	691.3	267.36	1047.3	902.1	667.9439184	146.8047136	746.0020141	215.149331	M5_p20	0.971428571	0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.193	151	0	0	NA	16qB2	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	0.8296991	sgMsh2	cell line
chr15	76185668	76185668	G	A	ENSMUST00000073418.12	5	ENSMUSG00000022565	missense	R/W	1153	Plec	ENSMUST00000073418.12:c.3457C>T	ENSMUSP00000073124.6:p.Arg1153Trp	H-2-Kb	8	7	5	VHRLWLPL	VHRLRLPL	SMM	145.794	747.722	5.129	36	0.194	184.366	805.542	4.369	756.53	292.75	951.2	214.3	747.7217263	145.794117	854.5549615	154.4329616	M5_p20	0.171428571	0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2	2	0.185	36	0	0	NA	15qD3	chr15-68084012-85707006	4	2	2	0.97	4.169990295	NA	1	0.795307427	sgMsh2	cell line
chr15	55084094	55084094	A	G	ENSMUST00000023059.12	1	ENSMUSG00000022422	missense	V/A	230	Dscc1	ENSMUST00000023059.12:c.689T>C	ENSMUSP00000023059.6:p.Val230Ala	H-2-Kb	8	6	6	WSLDRAPL	WSLDRVPL	SMMPMBEC	220.668	636.414	2.884	86	0.209	309.984	790.887	2.551	1192.99	347.86	795.2	403.9	786.5747483	272.1071791	636.4144033	220.6683258	M5_p20	-0.142857143	-0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.229	86	0	0	NA	15qD1	chr15-3279130-67114084	5	3	2	0.97	4.169990295	NA	1	0.984461626	sgMsh2	cell line
chr16	3592523	3592523	GA	G	ENSMUST00000216259.1	5	ENSMUSG00000051003	FS	G/X	42	Olfr161	ENSMUST00000216259.1:c.128del	ENSMUSP00000150825.1:p.Asn43ThrfsTer46	H-2-Kb	8	47	0	LSLRYWPF	NA	NetMHCpan	130.4	NA	NA	203	0.197	210.41	NA	NA	NA	465.62	NA	130.4	NA	248.7367755	NA	172.0838049	M5_p20	-0.357142857	-0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.195	203	0	0	NA	16qA1	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	sgMsh2	cell line
chr16	58915901	58915901	GA	G	ENSMUST00000171656.2	2	ENSMUSG00000090629	FS	S/X	247	Olfr180	ENSMUST00000171656.2:c.739del	ENSMUSP00000128358.1:p.Ser247LeufsTer31	H-2-Kb	8	31	0	KTYQWLYF	NA	NetMHCpan	200.7	NA	NA	198	0.237	382.912	NA	NA	NA	489.31	NA	200.7	NA	445.3895263	NA	320.4350395	M5_p20	-0.157142857	-0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.23	198	0	0	NA	16qC1.2	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	0.988760585	sgMsh2	cell line
chr16	58915901	58915901	GA	G	ENSMUST00000171656.2	2	ENSMUSG00000090629	FS	S/X	247	Olfr180	ENSMUST00000171656.2:c.739del	ENSMUSP00000128358.1:p.Ser247LeufsTer31	H-2-Kb	8	29	0	VIKTYQWL	NA	SMM	154.433	NA	NA	198	0.237	282.366	NA	NA	NA	556.53	NA	386.6	NA	154.4329616	NA	178.1312026	M5_p20	-0.285714286	-0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.23	198	0	0	NA	16qC1.2	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	0.988760585	sgMsh2	cell line
chr16	32961669	32961669	A	G	ENSMUST00000135193.8	5	ENSMUSG00000022801	missense	Y/C	271	Lrch3	ENSMUST00000135193.8:c.812A>G	ENSMUSP00000130708.1:p.Tyr271Cys	H-2-Kb	8	5	7	KIHIFKCL	KIHIFKYL	SMMPMBEC	256.886	92.628	0.361	211	0.275	319.381	76.184	0.239	59.74	598.73	59.4	324.9	102.9769442	313.8629122	92.62751223	256.8857419	M5_p20	1.571428571	1.571428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.299	211	0	0	NA	16qB3	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr16	3592590	3592590	A	G	ENSMUST00000216259.1	5	ENSMUSG00000051003	missense	S/G	65	Olfr161	ENSMUST00000216259.1:c.193A>G	ENSMUSP00000150825.1:p.Ser65Gly	H-2-Kb	9	5	7	PMYFFLGNL	PMYFFLSNL	SMM	22.862	15.35	0.671	236	0.242	43.133	26.875	0.623	34.5	54.11	28.5	71.6	15.35005727	22.86177783	25.24933823	32.15511003	M5_p20	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.247	236	0	0	NA	16qA1	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	sgMsh2	cell line
chr15	98126427	98126427	G	T	ENSMUST00000051226.7	1	ENSMUSG00000033065	missense	G/C	439	Pfkm	ENSMUST00000051226.7:c.1315G>T	ENSMUSP00000059801.6:p.Gly439Cys	H-2-Kb	9	7	5	VVHDCFEGL	VVHDGFEGL	NetMHC	110.43	431.59	3.908	167	0.401	228.926	428.227	1.871	431.59	110.43	423.6	235.2	439.6529586	227.0439846	424.864065	230.8075441	M5_p20	-0.214285714	0.5	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.402	167	0	0	NA	15qF1	chr15-85707064-102454328	5	3	2	0.97	4.169990295	NA	2	1	sgMsh2	cell line
chr16	20686853	20686853	A	G	ENSMUST00000115460.7	5	ENSMUSG00000045983	missense	I/V	1292	Eif4g1	ENSMUST00000115460.7:c.3874A>G	ENSMUSP00000111120.1:p.Ile1292Val	H-2-Kb	9	11	1	VAREHMGRL	IAREHMGRL	SMMPMBEC	106.967	141.661	1.324	130	0.3	116.472	149.63	1.285	127.43	113.79	157.6	170.6	175.4324789	119.1543769	141.6609011	106.9670454	M5_p20	-1.485714286	-0.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.295	130	0	0	NA	16qB1	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr15	63824978	63824978	T	C	ENSMUST00000188691.1	1	ENSMUSG00000056293	missense	K/R	448	Gsdmc2	ENSMUST00000188691.1:c.1343A>G	ENSMUSP00000140487.1:p.Lys448Arg	H-2-Kb	9	4	8	STWDLEARM	STWDLEAKM	NetMHC	270.97	630.27	2.326	439	0.248	393.946	686.739	1.743	630.27	270.97	949.5	462.3	743.2073569	407.4834739	574.4470454	380.4083139	M5_p20	-0.7	-0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.244	439	0	0	NA	15qD1	chr15-3279130-67114084	5	3	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr15	76622252	76622252	GT	G	ENSMUST00000078803.4	1	ENSMUSG00000115987	FS	N/X	216	Vps28	ENSMUST00000078803.4:c.647del	ENSMUSP00000077856.3:p.Asn216ThrfsTer?	H-2-Kb	9	5	7	SAYNAFTAS	SAYNAFNRF	SMM	204.226	61.96	0.303	232	0.306	329.815	52.55	0.159	43.14	281.84	34.5	452.4	61.95979897	204.225515	87.54876014	377.7896015	M5_p20	0.014285714	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.277	232	0	0	NA	15qD3	chr15-68084012-85707006	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr16	58915901	58915901	GA	G	ENSMUST00000171656.2	2	ENSMUSG00000090629	FS	S/X	247	Olfr180	ENSMUST00000171656.2:c.739del	ENSMUSP00000128358.1:p.Ser247LeufsTer31	H-2-Kb	9	31	0	KTYQWLYFI	NA	NetMHCpan	171.2	NA	NA	198	0.237	384.332	NA	NA	NA	307.23	NA	171.2	NA	461.4344339	NA	521.4948213	M5_p20	0.585714286	0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.23	198	0	0	NA	16qC1.2	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	0.988760585	sgMsh2	cell line
chr15	76185668	76185668	G	A	ENSMUST00000073418.12	5	ENSMUSG00000022565	missense	R/W	1153	Plec	ENSMUST00000073418.12:c.3457C>T	ENSMUSP00000073124.6:p.Arg1153Trp	H-2-Kb	9	6	6	TVHRLWLPL	TVHRLRLPL	NetMHCpan	140.4	473.4	3.372	36	0.194	302.662	666.334	2.202	585.79	318.08	473.4	140.4	790.8789199	332.7438214	746.8785726	287.2433612	M5_p20	0.171428571	0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2	2	0.185	36	0	0	NA	15qD3	chr15-68084012-85707006	4	2	2	0.97	4.169990295	NA	1	0.795307427	sgMsh2	cell line
chr16	3592523	3592523	GA	G	ENSMUST00000216259.1	5	ENSMUSG00000051003	FS	G/X	42	Olfr161	ENSMUST00000216259.1:c.128del	ENSMUSP00000150825.1:p.Asn43ThrfsTer46	H-2-Kb	9	39	0	WMYASPPPL	NA	NetMHCpan	187.9	NA	NA	203	0.197	209.738	NA	NA	NA	330.1	NA	187.9	NA	192.357888	NA	227.1171867	M5_p20	-0.185714286	-0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.195	203	0	0	NA	16qA1	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	sgMsh2	cell line
chr16	43898221	43898221	C	A	ENSMUST00000132859.7	5	ENSMUSG00000022701	missense	S/Y	4	Ccdc191	ENSMUST00000132859.7:c.11C>A	ENSMUSP00000116078.1:p.Ser4Tyr	H-2-Kb	9	2	3	MTYMKKELV	MTSMKKELV	NetMHC	416.43	10480.62	25.168	383	0.269	433.746	8552.231	19.717	10480.62	416.43	14641.3	616.9	6623.84254	440.6664633	5600.799166	426.8251484	M5_p20	-0.385714286	-0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.283	383	0	0	NA	16qB4	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr16	58926453	58926453	T	C	ENSMUST00000205986.3	2	ENSMUSG00000090951	missense	I/M	39	Olfr181	ENSMUST00000205986.3:c.117A>G	ENSMUSP00000145877.2:p.Ile39Met	H-2-Kb	9	3	9	FSAIYLVTM	FSAIYLVTI	SMM	339.711	641.372	1.888	505	0.24	388.31	695.236	1.79	910.5	521.58	749.1	436.8	641.3720055	339.7113053	579.7623384	339.8208329	M5_p20	2.028571429	2.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.248	505	0	0	NA	16qC1.3	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr16	32756512	32756512	A	G	ENSMUST00000096106.9	5	ENSMUSG00000079620	missense	T/A	2129	Muc4	ENSMUST00000096106.9:c.6385A>G	ENSMUSP00000093813.3:p.Thr2129Ala	H-2-Kb	9	9	3	VIATHGSTL	VITTHGSTL	SMM	403.748	587.638	1.455	334	0.278	431.743	696.919	1.614	857.84	657.9	806.2	439.6	587.6381732	403.747643	562.6651281	423.8869047	M5_p20	-0.028571429	0.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.271	334	0	0	NA	16qB3	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr17	45695545	45695545	G	A	ENSMUST00000024734.7	1	ENSMUSG00000023939	missense	S/N	15	Mrpl14	ENSMUST00000024734.7:c.44G>A	ENSMUSP00000024734.7:p.Ser15Asn	H-2-Db	9	7	5	FAHVNRAFS	FAHVSRAFS	SMM	38.514	780.944	20.277	62	0.129	60.359	3217.874	53.312	4988.41	45.63	5755.7	298.1	780.9441932	38.51412184	1447.338118	75.08790718	M5_p20	-0.457142857	-0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.146	62	0	0	NA	17qB3	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.627648024	sgMsh2	cell line
chr16	59543197	59543197	AT	A	ENSMUST00000172910.2	5	ENSMUSG00000022723	FS	K/X	2441	Crybg3	ENSMUST00000172910.2:c.7323del	ENSMUSP00000156047.1:p.Lys2441AsnfsTer11	H-2-Db	9	7	5	AAEMNHCIL	NA	NetMHCpan	226	NA	NA	35	0.114	388.867	NA	NA	NA	644.6	NA	226	NA	423.2724481	NA	354.4622582	M5_p20	0.357142857	0.357142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.167	35	0	0	NA	16qC1.3	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	0.717926164	sgMsh2	cell line
chr17	37701005	37701005	AT	A	ENSMUST00000213732.1	5	ENSMUSG00000059964	FS	F/X	112	Olfr119	ENSMUST00000213732.1:c.339del	ENSMUSP00000150099.1:p.Phe113LeufsTer3	H-2-Kb	8	5	8	QMFFFTFL	QMFFFTFF	NetMHCpan	9.9	98.7	9.97	499	0.232	18.421	250.269	13.586	184.5	17.4	98.7	9.9	316.0385059	19.44195797	349.7357273	27.84453695	M5_p20	2.314285714	2.314285714	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.224	499	0	0	NA	17qB1	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.962966831	sgMsh2	cell line
chr17	37382656	37382656	T	C	ENSMUST00000215518.1	5	ENSMUSG00000094884	missense	Y/H	30	Olfr105-ps	ENSMUST00000215518.1:c.88T>C	ENSMUSP00000154753.1:p.Tyr30His	H-2-Kb	8	8	4	LAMHFINV	LAMYFINV	NetMHCpan	38.2	31.6	0.827	506	0.217	115.449	106.2	0.92	39.92	67.69	31.6	38.2	226.3288934	224.7708563	172.480499	163.2074578	M5_p20	1.214285714	1.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.233	506	0	0	NA	17qB1	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr17	38082114	38082114	A	G	ENSMUST00000216523.1	5	ENSMUSG00000043312	missense	M/T	288	Olfr131	ENSMUST00000216523.1:c.863T>C	ENSMUSP00000150562.1:p.Met288Thr	H-2-Kb	8	8	4	ITPTLNPL	ITPMLNPL	NetMHC	80.3	53.48	0.666	225	0.209	136.287	121.388	0.891	53.48	80.3	100.3	182.4	146.4670721	126.107234	142.4754378	146.4670721	M5_p20	-0.071428571	0.028571429	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.205	225	0	0	NA	17qB1	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.881286609	sgMsh2	cell line
chr16	90767027	90767027	CA	C	ENSMUST00000140920.1	5	ENSMUSG00000039929	FS	L/X	1616	Urb1	ENSMUST00000140920.1:c.4847del	ENSMUSP00000114717.1:p.Leu1616ArgfsTer37	H-2-Kb	8	35	0	MTPAFFSI	NA	NetMHCpan	58.1	NA	NA	72	0.458	155.093	NA	NA	NA	108.47	NA	58.1	NA	201.7158386	NA	223.738128	M5_p20	1.257142857	1.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.451	72	0	0	NA	16qC3.3	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	2	1	sgMsh2	cell line
chr16	88729227	88729227	G	T	ENSMUST00000060494.7	NA	ENSMUSG00000056350	missense	G/V	113	Krtap13-1	ENSMUST00000060494.7:c.338G>T	ENSMUSP00000055537.6:p.Gly113Val	H-2-Kb	8	11	1	VSRSSYSL	GSRSSYSL	SMM	130.84	2092.859	15.996	80	0.35	160.626	3922.63	24.421	7459.39	133	5752.4	266.8	2092.859144	130.8398387	1966.708524	188.2521739	M5_p20	-0.742857143	-0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.363	80	0	0	NA	16qC3.3	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	2	1	sgMsh2	cell line
chr17	42592968	42592968	TA	T	ENSMUST00000068355.7	1	ENSMUSG00000043972	FS	Y/X	159	Opn5	ENSMUST00000068355.7:c.475del	ENSMUSP00000063542.6:p.Tyr159MetfsTer43	H-2-Kb	8	5	7	LAVIWAML	LAVIWAYA	NetMHCpan	147.2	3567.3	24.234	53	0.245	206.513	4062.47	19.672	6717.72	182.49	3567.3	147.2	4557.639811	321.1737185	2604.593785	230.5366617	M5_p20	2.442857143	2.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.242	53	0	0	NA	17qB3	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr17	5712447	5712447	AT	A	ENSMUST00000089185.5	1	ENSMUSG00000034265	FS	F/X	209	Zdhhc14	ENSMUST00000089185.5:c.631del	ENSMUSP00000086589.4:p.Tyr211IlefsTer10	H-2-Kb	8	7	7	RNYRFFIC	RNYRFFYM	NetMHCpan	144.1	5.4	0.037	83	0.169	206.387	7.945	0.038	4.87	246.15	5.4	144.1	10.48914285	166.6249377	12.09873599	255.1173529	M5_p20	0.471428571	0.471428571	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.171	83	0	0	NA	17qA1	chr17-3079405-14959781	4	2	2	0.97	4.169990295	NA	1	0.735122	sgMsh2	cell line
chr17	37726881	37726881	G	A	ENSMUST00000077498.3	NA	ENSMUSG00000063994	missense	A/T	295	Olfr120	ENSMUST00000077498.3:c.883G>A	ENSMUSP00000094931.1:p.Ala295Thr	H-2-Kb	8	5	7	LALFYTTV	LALFYTAV	NetMHCpan	55.3	59.8	1.081	393	0.079	283.073	167.666	0.592	144.9	251.56	59.8	55.3	190.4320313	316.7670499	199.8664966	314.5864409	M5_p20	1.414285714	1.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.088	393	0	0	NA	17qB1	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.378308398	sgMsh2	cell line
chr17	40228805	40228805	A	G	ENSMUST00000026499.5	1	ENSMUSG00000025433	missense	V/A	167	Crisp3	ENSMUST00000026499.5:c.500T>C	ENSMUSP00000026499.5:p.Val167Ala	H-2-Kb	8	10	2	YACRYCPV	YVCRYCPV	SMMPMBEC	174.478	161.339	0.925	532	0.229	239.579	312.449	1.304	429.13	286.52	494.4	303	195.7672319	192.6371303	161.3392375	174.4777291	M5_p20	0.514285714	0.514285714	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.228	532	0	0	NA	17qB2	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.980162667	sgMsh2	cell line
chr17	44991768	44991768	G	T	ENSMUST00000050630.13	1	ENSMUSG00000038954	missense	G/V	74	Supt3	ENSMUST00000050630.13:c.221G>T	ENSMUSP00000050783.7:p.Gly74Val	H-2-Kb	8	7	5	SQLRVARV	SQLRGARV	SMM	311.702	892.771	2.864	91	0.187	348.489	1374.08	3.943	1855.39	352.04	3979	1438.4	892.7708467	311.7022951	724.0023903	344.9371732	M5_p20	0.214285714	0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.207	91	0	0	NA	17qB3	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.889884527	sgMsh2	cell line
chr17	38304994	38304994	T	C	ENSMUST00000213505.1	5	ENSMUSG00000054940	missense	T/A	156	Olfr137	ENSMUST00000213505.1:c.466A>G	ENSMUSP00000150173.1:p.Thr156Ala	H-2-Kb	8	7	5	CGFTASAL	CGFTTSAL	SMM	193.972	284.931	1.469	204	0.235	240.585	312.177	1.298	583.32	395.88	277.8	199.5	284.9311953	193.9724271	339.4220093	281.6696149	M5_p20	1.185714286	1.185714286	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.256	204	0	0	NA	17qB1	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr17	37751964	37751964	A	G	ENSMUST00000174675.3	5	ENSMUSG00000060017	missense	I/V	37	Olfr121	ENSMUST00000174675.3:c.109A>G	ENSMUSP00000133865.3:p.Ile37Val	H-2-Kb	8	4	8	CFLLFTLV	CFLLFTLI	SMM	253.945	461.041	1.816	673	0.241	479.578	724.227	1.51	850.4	581.81	2002	2533.9	461.0414792	253.9451951	598.0534499	377.3462166	M5_p20	2.928571429	2.928571429	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.248	673	0	0	NA	17qB1	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr17	30761096	30761096	GT	G	ENSMUST00000236140.1	NA	ENSMUSG00000033826	FS	F/X	3035	Dnah8	ENSMUST00000236140.1:c.9108del	ENSMUSP00000157469.1:p.Phe3036LeufsTer5	H-2-Kb	8	5	8	TSLDLVFL	TSLDLVFF	SMM	245.89	3997.054	16.255	155	0.219	452.067	3837.777	8.489	5159.69	706.65	3678.5	633.9	3997.053856	245.8895091	3394.220093	270.2340064	M5_p20	2.014285714	2.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.199	155	0	0	NA	17qA3.3	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.855492854	sgMsh2	cell line
chr17	34135711	34135711	T	C	ENSMUST00000042121.10	1	ENSMUSG00000037649	missense	L/P	14	H2-DMa	ENSMUST00000042121.10:c.41T>C	ENSMUSP00000037088.9:p.Leu14Pro	H-2-Kb	8	7	5	VLLRPLRL	VLLRLLRL	SMM	450.547	178.953	0.397	136	0.132	461.74	172.406	0.373	294.72	1135.8	114	451.7	178.9534189	450.5468939	165.8593656	471.7805149	M5_p20	0.657142857	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.156	136	0	0	NA	17qB1	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.670637614	sgMsh2	cell line
chr17	5712447	5712447	AT	A	ENSMUST00000089185.5	1	ENSMUSG00000034265	FS	F/X	209	Zdhhc14	ENSMUST00000089185.5:c.631del	ENSMUSP00000086589.4:p.Tyr211IlefsTer10	H-2-Kb	9	7	7	RNYRFFICL	RNYRFFYMF	NetMHCpan	6.8	18.7	2.75	83	0.169	22.441	28.629	1.276	16.93	7.72	18.7	6.8	38.55760057	37.16293451	54.85926694	40.01750427	M5_p20	1.514285714	1.514285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.171	83	0	0	NA	17qA1	chr17-3079405-14959781	4	2	2	0.97	4.169990295	NA	1	0.735122	sgMsh2	cell line
chr17	37701005	37701005	AT	A	ENSMUST00000213732.1	5	ENSMUSG00000059964	FS	F/X	112	Olfr119	ENSMUST00000213732.1:c.339del	ENSMUSP00000150099.1:p.Phe113LeufsTer3	H-2-Kb	9	4	9	TQMFFFTFL	TQMFFFTFF	NetMHCpan	14.3	117.3	8.203	499	0.232	93.963	252.605	2.688	250.38	40.61	117.3	14.3	271.7127388	161.1053638	254.8296748	147.3160278	M5_p20	2.314285714	2.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.224	499	0	0	NA	17qB1	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.962966831	sgMsh2	cell line
chr17	20994614	20994614	T	C	ENSMUST00000237195.1	NA	ENSMUSG00000045575	missense	I/V	25	Vmn1r233	ENSMUST00000237195.1:c.73A>G	ENSMUSP00000158452.1:p.Ile25Val	H-2-Kb	9	3	9	VIILFQTMV	VIILFQTMI	NetMHC	46.04	63.11	1.371	257	0.21	142.11	130.172	0.916	63.11	46.04	89.3	129.3	171.044849	154.920896	194.6480243	188.4733717	M5_p20	1.857142857	2.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.217	257	0	0	NA	17qA3.2	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.932874117	sgMsh2	cell line
chr17	44991768	44991768	G	T	ENSMUST00000050630.13	1	ENSMUSG00000038954	missense	G/V	74	Supt3	ENSMUST00000050630.13:c.221G>T	ENSMUSP00000050783.7:p.Gly74Val	H-2-Kb	9	6	6	VSQLRVARV	VSQLRGARV	NetMHC	46.24	140.54	3.039	91	0.187	247.023	411.993	1.668	140.54	46.24	676.5	247.3	442.7004873	284.5181656	381.2852457	246.7459312	M5_p20	0.214285714	0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.207	91	0	0	NA	17qB3	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.889884527	sgMsh2	cell line
chr17	13225949	13225949	T	C	ENSMUST00000080647.4	1	ENSMUSG00000073458	missense	C/R	138	Smok2a	ENSMUST00000080647.4:c.412T>C	ENSMUSP00000094432.2:p.Cys138Arg	H-2-Kb	9	8	4	INYRHNQGI	INYCHNQGI	NetMHCpan	30	54.9	1.83	743	0.097	105.887	125.761	1.188	188.04	80.78	54.9	30	133.6934098	144.9138851	117.8284053	130.9935766	M5_p20	-1.7	-1.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.107	743	0	0	NA	17qA1	chr17-3079405-14959781	4	2	2	0.97	4.169990295	NA	1	0.45998862	sgMsh2	cell line
chr16	97951903	97951903	CT	C	ENSMUST00000113734.8	2	ENSMUSG00000046962	FS	K/X	421	Zbtb21	ENSMUST00000113734.8:c.1263del	ENSMUSP00000109363.2:p.Ala422LeufsTer31	H-2-Kb	9	20	0	SSLIASGPL	NA	NetMHC	110.71	NA	NA	108	0.176	293.067	NA	NA	NA	110.71	NA	223.8	NA	362.3347605	NA	466.9280884	M5_p20	1.585714286	1.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1759	108	0	0	NA	16qC4	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	sgMsh2	cell line
chr17	37751964	37751964	A	G	ENSMUST00000174675.3	5	ENSMUSG00000060017	missense	I/V	37	Olfr121	ENSMUST00000174675.3:c.109A>G	ENSMUSP00000133865.3:p.Ile37Val	H-2-Kb	9	11	1	VLLMFLVSL	ILLMFLVSL	NetMHC	127.87	166.59	1.303	673	0.241	185.568	235.147	1.267	166.59	127.87	243.7	206.3	294.5167504	200.0368468	226.5948317	171.0999962	M5_p20	2.785714286	3.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.248	673	0	0	NA	17qB1	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr17	32774731	32774731	T	C	ENSMUST00000159086.9	1	ENSMUSG00000024298	missense	K/R	490	Zfp871	ENSMUST00000159086.9:c.1469A>G	ENSMUSP00000127178.1:p.Lys490Arg	H-2-Kb	9	7	5	SQFQRHKAL	SQFQKHKAL	NetMHC	137.22	270.99	1.975	182	0.187	206.635	341.188	1.651	270.99	137.22	269.6	151.3	460.3731641	307.6876041	411.386466	261.9690589	M5_p20	-0.957142857	-0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.191	182	0	0	NA	17qB1	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.821101182	sgMsh2	cell line
chr17	37701005	37701005	AT	A	ENSMUST00000213732.1	5	ENSMUSG00000059964	FS	F/X	112	Olfr119	ENSMUST00000213732.1:c.339del	ENSMUSP00000150099.1:p.Phe113LeufsTer3	H-2-Kb	9	5	8	QMFFFTFLV	QMFFFTFFG	SMM	56.378	416.016	7.379	499	0.232	130.663	1702.349	13.029	3181.25	152.62	2823.6	205	416.0159675	56.37804345	581.0988286	108.7051201	M5_p20	2.642857143	2.642857143	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.224	499	0	0	NA	17qB1	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.962966831	sgMsh2	cell line
chr17	37382656	37382656	T	C	ENSMUST00000215518.1	5	ENSMUSG00000094884	missense	Y/H	30	Olfr105-ps	ENSMUST00000215518.1:c.88T>C	ENSMUSP00000154753.1:p.Tyr30His	H-2-Kb	9	7	5	VLAMHFINV	VLAMYFINV	NetMHCpan	171.6	152.5	0.889	506	0.217	293.012	230.854	0.788	138.03	197.65	152.5	171.6	338.9299909	422.7756832	309.2074862	388.3738676	M5_p20	1.214285714	2.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.233	506	0	0	NA	17qB1	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr17	20502548	20502548	A	G	ENSMUST00000233982.1	NA	ENSMUSG00000043537	missense	I/V	84	Vmn1r225	ENSMUST00000233982.1:c.250A>G	ENSMUSP00000156633.1:p.Ile84Val	H-2-Kb	9	9	3	KHVLYIQRL	KHILYIQRL	NetMHCpan	229.1	133.9	0.584	252	0.321	487.214	317.745	0.652	155.48	277.4	133.9	229.1	489.9028884	716.3248211	480.0096849	697.02764	M5_p20	1	1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.334	252	0	0	NA	17qA3.2	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	2	1	sgMsh2	cell line
chr17	19053653	19053653	C	A	ENSMUST00000170424.2	5	ENSMUSG00000096717	missense	S/Y	54	Vmn2r98	ENSMUST00000170424.2:c.161C>A	ENSMUSP00000131261.1:p.Ser54Tyr	H-2-Kb	9	7	5	HTFYYLKKM	HTFYSLKKM	NetMHCpan	162.4	2676.5	16.481	218	0.183	315.655	1812.209	5.741	2171.47	303.78	2676.5	162.4	1432.550696	345.2311699	1452.947761	327.5291816	M5_p20	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.197	218	0	0	NA	17qA3.2	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.846894936	sgMsh2	cell line
chr17	18929203	18929203	T	G	ENSMUST00000168710.2	5	ENSMUSG00000091491	missense	I/M	284	Vmn2r97	ENSMUST00000168710.2:c.852T>G	ENSMUSP00000129313.1:p.Ile284Met	H-2-Kb	9	10	2	IMRNIEQRL	IIRNIEQRL	SMM	377.668	845.493	2.239	746	0.255	431.344	837.911	1.943	800.92	461.59	1635	1041.5	845.4929682	377.6678362	830.3286055	401.0975415	M5_p20	-1.6	-0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.258	746	0	0	NA	17qA3.2	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr17	34135711	34135711	T	C	ENSMUST00000042121.10	1	ENSMUSG00000037649	missense	L/P	14	H2-DMa	ENSMUST00000042121.10:c.41T>C	ENSMUSP00000037088.9:p.Leu14Pro	H-2-Kb	9	6	6	AVLLRPLRL	AVLLRLLRL	SMM	353.273	150.006	0.425	136	0.132	413.976	150.031	0.362	118.9	469.65	167.1	478.9	150.006473	353.2726369	150.0548372	358.3026333	M5_p20	0.657142857	1.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.156	136	0	0	NA	17qB1	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.670637614	sgMsh2	cell line
chr17	20687637	20687637	G	T	ENSMUST00000232708.1	NA	ENSMUSG00000042848	missense	D/Y	44	Vmn1r226	ENSMUST00000232708.1:c.130G>T	ENSMUSP00000156517.1:p.Asp44Tyr	H-2-Kb	9	6	6	TMKKIYMIL	TMKKIDMIL	SMMPMBEC	378.66	2340.184	6.18	214	0.178	495.583	4735.419	9.555	9617.94	2080.05	6632.2	550.5	2838.63792	440.6664633	2340.183969	378.6604965	M5_p20	0.8	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.205	214	0	0	NA	17qA3.2	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.881286609	sgMsh2	cell line
chr17	56632320	56632320	T	G	ENSMUST00000112979.3	1	ENSMUSG00000040828	missense	F/V	50	Catsperd	ENSMUST00000112979.3:c.148T>G	ENSMUSP00000108603.2:p.Phe50Val	H-2-Db	9	5	7	YAFPNTVVL	YAFPNTFVL	NetMHCpan	9.1	7.6	0.835	281	0.189	33.615	30.922	0.92	12.57	10.27	7.6	9.1	49.27424743	62.03260224	49.83907806	56.96000254	M5_p20	1.314285714	1.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.191	281	0	0	NA	17qD	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.821101182	sgMsh2	cell line
chr18	37680939	37680939	G	T	ENSMUST00000192931.1	1	ENSMUSG00000103037	missense	S/I	161	Pcdhgb1	ENSMUST00000192931.1:c.482G>T	ENSMUSP00000141348.1:p.Ser161Ile	H-2-Db	9	3	9	NSLKMYTVI	NSLKMYTVS	NetMHC	158.89	19903.22	125.264	261	0.452	356.594	9153.28	25.669	19903.22	158.89	14990.9	524.3	2996.539453	391.3992598	3315.660076	321.7881152	M5_p20	1.214285714	1.214285714	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.445	261	0	0	NA	18qB3	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	2	1	sgMsh2	cell line
chr18	37021442	37021442	T	C	ENSMUST00000047614.3	1	ENSMUSG00000103310	missense	Y/H	405	Pcdha12	ENSMUST00000047614.3:c.1213T>C	ENSMUSP00000047609.1:p.Tyr405His	H-2-Db	9	5	7	STFKNYHSL	STFKNYYSL	NetMHCpan	36.5	34.8	0.953	254	0.311	221.131	155.833	0.705	81.22	180.1	34.8	36.5	270.7821299	272.659102	230.4464382	262.162156	M5_p20	-0.871428571	-0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.317	254	0	0	NA	18qB2	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr18	87757090	87757090	A	G	ENSMUST00000091776.6	NA	ENSMUSG00000069324	missense	S/G	246	Gm5096	ENSMUST00000091776.6:c.736A>G	ENSMUSP00000135956.1:p.Ser246Gly	H-2-Db	9	6	6	KAYLMGQPL	KAYLMSQPL	SMMPMBEC	194.343	201.173	1.035	51	0.235	223.071	228.146	1.023	466.71	249.99	203	196.9	253.2911408	249.2412955	201.1731425	194.3434911	M5_p20	0.385714286	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.214	51	0	0	NA	18qE4	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	0.91997724	sgMsh2	cell line
chr17	84697532	84697532	T	C	ENSMUST00000045714.14	1	ENSMUSG00000024254	missense	F/L	576	Abcg8	ENSMUST00000045714.14:c.1726T>C	ENSMUSP00000035246.8:p.Phe576Leu	H-2-Db	9	10	2	GLMINLDNL	GFMINLDNL	NetMHCpan	367.1	1384.4	3.771	94	0.319	482.343	875.659	1.815	1955.18	698.93	1384.4	367.1	313.0545354	536.5621085	366.91883	428.1244195	M5_p20	0.5	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.329	94	0	0	NA	17qE4	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	2	1	sgMsh2	cell line
chr17	84697532	84697532	T	C	ENSMUST00000045714.14	1	ENSMUSG00000024254	missense	F/L	576	Abcg8	ENSMUST00000045714.14:c.1726T>C	ENSMUSP00000035246.8:p.Phe576Leu	H-2-Kb	8	4	8	SFYLTAGL	SFYLTAGF	NetMHC	15.37	172.25	11.207	94	0.319	31.057	352.868	11.362	172.25	15.37	298.6	61	482.7696948	29.69887511	407.1364636	32.41455024	M5_p20	1.4	1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.329	94	0	0	NA	17qE4	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	2	1	sgMsh2	cell line
chr18	61697778	61697778	T	C	ENSMUST00000025472.6	1	ENSMUSG00000024579	missense	Y/C	341	Pcyox1l	ENSMUST00000025472.6:c.1022A>G	ENSMUSP00000025472.1:p.Tyr341Cys	H-2-Kb	8	5	7	VSLVHGCL	VSLVHGYL	NetMHC	42.26	7.17	0.17	93	0.28	48.333	15.42	0.319	7.17	42.26	15	81.6	15.83944645	48.27696948	17.44777291	48.38825938	M5_p20	1.414285714	1.471428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.311	93	0	0	NA	18qE1	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr18	75519813	75519813	T	C	ENSMUST00000165559.2	5	ENSMUSG00000052928	missense	K/E	458	Ctif	ENSMUST00000165559.2:c.1372A>G	ENSMUSP00000129974.1:p.Lys458Glu	H-2-Kb	8	5	7	FAFTAAEL	FAFTAAKL	NetMHC	81.29	76.52	0.941	55	0.236	124.469	90.585	0.728	76.52	81.29	76	111.3	104.6501849	137.6385219	105.6185011	153.0171117	M5_p20	1.114285714	1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.229	55	0	0	NA	18qE3	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	0.984461626	sgMsh2	cell line
chr18	47248715	47248715	G	T	ENSMUST00000019791.13	1	ENSMUSG00000019647	missense	P/T	922	Sema6a	ENSMUST00000019791.13:c.2764C>A	ENSMUSP00000019791.7:p.Pro922Thr	H-2-Kb	8	8	4	RSYTTNSL	RSYPTNSL	NetMHC	93.98	244.83	2.605	80	0.225	116.078	230.832	1.989	244.83	93.98	226.3	149.3	193.5263029	115.2762924	235.3639803	116.8799454	M5_p20	-0.571428571	-0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.241	80	0	0	NA	18qC	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr17	56777470	56777470	T	C	ENSMUST00000002444.14	1	ENSMUSG00000024206	missense	N/S	668	Rfx2	ENSMUST00000002444.14:c.2003A>G	ENSMUSP00000002444.7:p.Asn668Ser	H-2-Kb	8	6	6	VMGEFSDL	VMGEFNDL	NetMHC	113.49	324.64	2.861	113	0.257	192.202	326.647	1.699	324.64	113.49	576.2	261.7	313.8629122	193.9724271	328.6548155	190.4320313	M5_p20	0.042857143	0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.282	113	0	0	NA	17qD	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr18	56491908	56491908	A	C	ENSMUST00000237355.1	NA	ENSMUSG00000001700	missense	I/L	358	Gramd3	ENSMUST00000237355.1:c.1072A>C	ENSMUSP00000157710.1:p.Ile358Leu	H-2-Kb	8	4	8	AIIVCALL	AIIVCALI	NetMHC	138.87	1449.26	10.436	121	0.157	182.51	1386.404	7.596	1449.26	138.87	2402.7	511.3	1323.548926	204.0515979	924.1447486	160.9681675	M5_p20	3.585714286	3.585714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.149	121	0	0	NA	18qD3	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	0.640544901	sgMsh2	cell line
chr19	4271293	4271293	C	T	ENSMUST00000056888.12	1	ENSMUSG00000005986	missense	S/N	425	Ankrd13d	ENSMUST00000056888.12:c.1274G>A	ENSMUSP00000053783.6:p.Ser425Asn	H-2-Kb	8	6	6	ARITFNNL	ARITFSNL	NetMHC	150.52	49.13	0.326	254	0.201	154.3	92.311	0.598	49.13	150.52	253.9	536	93.0550614	150.5705372	91.56721386	158.0301673	M5_p20	-0.157142857	-0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.212	254	0	0	NA	19qA	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	sgMsh2	cell line
chr17	83477824	83477824	T	C	ENSMUST00000096766.11	1	ENSMUSG00000032624	missense	L/P	875	Eml4	ENSMUST00000096766.11:c.2624T>C	ENSMUSP00000094528.4:p.Leu875Pro	H-2-Kb	8	5	7	SIIQWKPV	SIIQWKLV	SMMPMBEC	267.141	735.766	2.754	151	0.199	337.819	1037.14	3.07	1227.56	355.94	1662.3	657.1	846.7203545	319.6980594	735.7664827	267.1406633	M5_p20	0.471428571	0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.206	151	0	0	NA	17qE4	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.885585568	sgMsh2	cell line
chr18	37941753	37941753	A	G	ENSMUST00000043498.8	1	ENSMUSG00000024454	missense	S/P	312	Hdac3	ENSMUST00000043498.8:c.934T>C	ENSMUSP00000037981.7:p.Ser312Pro	H-2-Kb	8	6	6	WTYETPLL	WTYETSLL	SMMPMBEC	359.534	238.638	0.664	309	0.217	430.684	272.762	0.633	289.23	493.46	348.5	494.9	256.2949211	367.908651	238.6382195	359.5340277	M5_p20	-0.028571429	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.223	309	0	0	NA	18qB3	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	0.958667872	sgMsh2	cell line
chr18	37021442	37021442	T	C	ENSMUST00000047614.3	1	ENSMUSG00000103310	missense	Y/H	405	Pcdha12	ENSMUST00000047614.3:c.1213T>C	ENSMUSP00000047609.1:p.Tyr405His	H-2-Kb	8	8	4	KNYHSLVL	KNYYSLVL	NetMHCpan	150	57	0.38	254	0.311	428.416	356.888	0.833	345.02	673.56	57	150	368.7567681	366.2182643	518.4895408	490.6140712	M5_p20	0.428571429	0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.317	254	0	0	NA	18qB2	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr17	87717533	87717533	A	G	ENSMUST00000024967.13	1	ENSMUSG00000024151	missense	N/S	613	Msh2	ENSMUST00000024967.13:c.1838A>G	ENSMUSP00000024967.7:p.Asn613Ser	H-2-Kb	8	4	8	VSFAHVSS	VSFAHVSN	SMM	72.4	63.203	0.873	542	0.065	302.725	552.478	1.825	2397.03	700.89	1016.7	488.3	63.20333573	72.40023903	88.25513833	117.1493815	M5_p20	0.457142857	1.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.063	542	0	0	NA	17qE4	chr17-87672302-87723786	18.50797381	15.50797381	3	0.97	4.169990295	NA	1	0.270834421	sgMsh2	cell line
chr18	37473936	37473936	T	C	ENSMUST00000050034.2	NA	ENSMUSG00000047033	missense	F/L	74	Pcdhb15	ENSMUST00000050034.2:c.220T>C	ENSMUSP00000059598.1:p.Phe74Leu	H-2-Kb	8	10	2	RLLLLSPL	RFLLLSPL	SMMPMBEC	429.279	192.637	0.449	74	0.23	459.126	249.124	0.543	305.61	971.72	348.4	437.7	163.5836898	480.5515695	192.6371303	429.2793522	M5_p20	2.371428571	2.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.244	74	0	0	NA	18qB3	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr18	37021442	37021442	T	C	ENSMUST00000047614.3	1	ENSMUSG00000103310	missense	Y/H	405	Pcdha12	ENSMUST00000047614.3:c.1213T>C	ENSMUSP00000047609.1:p.Tyr405His	H-2-Kb	8	6	6	TFKNYHSL	TFKNYYSL	SMM	267.756	194.42	0.726	254	0.311	366.723	239.62	0.653	359	1171.72	262.6	447.2	194.4195797	267.7564861	216.6406749	286.246378	M5_p20	-0.871428571	-0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.317	254	0	0	NA	18qB2	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr18	37021442	37021442	T	C	ENSMUST00000047614.3	1	ENSMUSG00000103310	missense	Y/H	405	Pcdha12	ENSMUST00000047614.3:c.1213T>C	ENSMUSP00000047609.1:p.Tyr405His	H-2-Kb	9	5	7	STFKNYHSL	STFKNYYSL	NetMHCpan	15.4	13.9	0.903	254	0.311	61.313	45.651	0.745	16.12	22.6	13.9	15.4	75.18132925	100.0253316	87.34740358	104.5321782	M5_p20	-0.871428571	-0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.317	254	0	0	NA	18qB2	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr19	3948632	3948632	A	G	ENSMUST00000162708.6	1	ENSMUSG00000036908	missense	K/R	517	Unc93b1	ENSMUST00000162708.6:c.1550A>G	ENSMUSP00000124272.1:p.Lys517Arg	H-2-Kb	9	4	8	SSLPMKARL	SSLPMKAKL	NetMHC	44.92	155.55	3.463	111	0.432	188.011	364.422	1.938	155.55	44.92	303	126.5	455.1033161	249.5226649	425.8434778	282.000579	M5_p20	0.185714286	0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.451	111	0	0	NA	19qA	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	sgMsh2	cell line
chr18	87757090	87757090	A	G	ENSMUST00000091776.6	NA	ENSMUSG00000069324	missense	S/G	246	Gm5096	ENSMUST00000091776.6:c.736A>G	ENSMUSP00000135956.1:p.Ser246Gly	H-2-Kb	9	6	6	KAYLMGQPL	KAYLMSQPL	NetMHC	51.85	22.64	0.437	51	0.235	113.449	50.898	0.449	22.64	51.85	38.1	76.2	63.69568317	150.6988715	108.4551052	189.7798067	M5_p20	0.385714286	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.214	51	0	0	NA	18qE4	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	0.91997724	sgMsh2	cell line
chr17	84697532	84697532	T	C	ENSMUST00000045714.14	1	ENSMUSG00000024254	missense	F/L	576	Abcg8	ENSMUST00000045714.14:c.1726T>C	ENSMUSP00000035246.8:p.Phe576Leu	H-2-Kb	9	3	9	NSFYLTAGL	NSFYLTAGF	NetMHC	85.47	432.59	5.061	94	0.319	225.767	521.843	2.311	432.59	85.47	325	89.2	611.0967866	362.3347605	709.9863514	410.4403034	M5_p20	1.4	1.4	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.329	94	0	0	NA	17qE4	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	2	1	sgMsh2	cell line
chr18	71682179	71682179	C	T	ENSMUST00000114943.10	1	ENSMUSG00000060534	missense	D/N	375	Dcc	ENSMUST00000114943.10:c.1123G>A	ENSMUSP00000110593.3:p.Asp375Asn	H-2-Kb	9	7	5	VIPSNYFQI	VIPSDYFQI	NetMHC	117.25	765.54	6.529	122	0.287	245.899	656.978	2.672	765.54	117.25	949	251.3	548.4158525	240.4971865	537.3410257	285.9235978	M5_p20	-0.485714286	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.332	122	0	0	NA	18qE2	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr17	87717533	87717533	A	G	ENSMUST00000024967.13	1	ENSMUSG00000024151	missense	N/S	613	Msh2	ENSMUST00000024967.13:c.1838A>G	ENSMUSP00000024967.7:p.Asn613Ser	H-2-Kb	9	4	8	VSFAHVSSA	VSFAHVSNA	NetMHCpan	97.1	60.3	0.621	542	0.065	246.187	172.601	0.701	61.9	173.77	60.3	97.1	341.2793414	397.2921646	283.3022345	318.6031021	M5_p20	0.828571429	1.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.063	542	0	0	NA	17qE4	chr17-87672302-87723786	18.50797381	15.50797381	3	0.97	4.169990295	NA	1	0.270834421	sgMsh2	cell line
chr17	52894041	52894041	A	T	ENSMUST00000039366.10	1	ENSMUSG00000035580	missense	Q/L	501	Kcnh8	ENSMUST00000039366.10:c.1502A>T	ENSMUSP00000049206.9:p.Gln501Leu	H-2-Kb	9	3	9	FIRVHHLPL	FIRVHHLPQ	NetMHC	175.02	10465.78	59.798	189	0.307	216.13	5778.924	26.738	10465.78	175.02	13812	231.3	1049.808295	200.9601749	1092.068801	232.4074256	M5_p20	-0.1	0.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.322	189	0	0	NA	17qC	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr18	37302556	37302556	A	G	ENSMUST00000051754.1	NA	ENSMUSG00000045498	missense	Q/R	525	Pcdhb3	ENSMUST00000051754.1:c.1574A>G	ENSMUSP00000059180.1:p.Gln525Arg	H-2-Kb	9	11	1	RAFEFHVGA	QAFEFHVGA	NetMHCpan	110.2	284.7	2.583	243	0.21	481.759	390.709	0.811	172.28	176.02	284.7	110.2	496.7181164	857.254947	579.7623384	787.4989801	M5_p20	0.642857143	0.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.221	243	0	0	NA	18qB3	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	0.950069954	sgMsh2	cell line
chr17	84697532	84697532	T	C	ENSMUST00000045714.14	1	ENSMUSG00000024254	missense	F/L	576	Abcg8	ENSMUST00000045714.14:c.1726T>C	ENSMUSP00000035246.8:p.Phe576Leu	H-2-Kb	9	4	8	SFYLTAGLM	SFYLTAGFM	NetMHC	185.37	344.02	1.856	94	0.319	368.163	542.485	1.473	344.02	185.37	582.5	462.1	502.4698412	274.2268658	867.4610828	521.4948213	M5_p20	1.271428571	1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.329	94	0	0	NA	17qE4	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	2	1	sgMsh2	cell line
chr17	57450038	57450038	T	C	ENSMUST00000086763.12	1	ENSMUSG00000004730	missense	L/P	765	Adgre1	ENSMUST00000086763.12:c.2294T>C	ENSMUSP00000083971.5:p.Leu765Pro	H-2-Kb	9	5	7	CAFGYGPPV	CAFGYGLPV	NetMHCpan	162.5	159.8	0.983	65	0.215	222.987	320.635	1.438	334.29	190.64	159.8	162.5	306.9799422	255.3347944	378.6604965	325.2744865	M5_p20	0.242857143	0.485714286	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.201	65	0	0	NA	17qD	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.864090772	sgMsh2	cell line
chr18	37680939	37680939	G	T	ENSMUST00000192931.1	1	ENSMUSG00000103037	missense	S/I	161	Pcdhgb1	ENSMUST00000192931.1:c.482G>T	ENSMUSP00000141348.1:p.Ser161Ile	H-2-Kb	9	10	2	VIPNPHFSL	VSPNPHFSL	NetMHC	211.65	119.37	0.564	261	0.452	410.119	267.215	0.652	119.37	211.65	107.8	235.3	415.0591573	584.9382211	522.696991	774.9077422	M5_p20	-0.585714286	0.228571429	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.445	261	0	0	NA	18qB3	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	2	1	sgMsh2	cell line
chr18	5063222	5063222	C	T	ENSMUST00000126977.7	5	ENSMUSG00000024236	missense	S/F	831	Svil	ENSMUST00000126977.7:c.2492C>T	ENSMUSP00000115078.1:p.Ser831Phe	H-2-Kb	9	6	6	KLISFFPTV	KLISFSPTV	NetMHCpan	74.3	576.3	7.756	70	0.129	393.149	1306.593	3.323	1067.54	244.16	576.3	74.3	1545.645878	542.1381881	2519.126636	711.6230389	M5_p20	1.6	1.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.127	70	0	0	NA	18qA1	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	0.545967801	sgMsh2	cell line
chr17	56632320	56632320	T	G	ENSMUST00000112979.3	1	ENSMUSG00000040828	missense	F/V	50	Catsperd	ENSMUST00000112979.3:c.148T>G	ENSMUSP00000108603.2:p.Phe50Val	H-2-Kb	9	3	9	LFYAFPNTV	LFYAFPNTF	NetMHCpan	233	338.6	1.453	281	0.189	281.738	333.442	1.184	338.69	258.61	338.6	233	228.6177783	304.8667072	328.2842143	424.864065	M5_p20	0.242857143	0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.191	281	0	0	NA	17qD	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.821101182	sgMsh2	cell line
chr18	25340381	25340381	A	G	ENSMUST00000097643.9	5	ENSMUSG00000033632	missense	N/S	414	AW554918	ENSMUST00000097643.9:c.1241A>G	ENSMUSP00000095248.3:p.Asn414Ser	H-2-Kb	9	10	2	YSWLRTQAM	YNWLRTQAM	NetMHCpan	246.9	389.9	1.579	45	0.267	285.227	354.619	1.243	397.05	289.33	389.9	246.9	301.3769268	283.2109234	319.3375581	287.2433612	M5_p20	-0.3	-0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.234	45	0	0	NA	18qA2	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr18	44847844	44847844	A	G	ENSMUST00000037763.10	1	ENSMUSG00000034653	missense	Q/R	502	Ythdc2	ENSMUST00000037763.10:c.1505A>G	ENSMUSP00000048340.7:p.Gln502Arg	H-2-Kb	9	9	3	FARVFHLIL	FAQVFHLIL	SMM	224.962	422.776	1.879	159	0.145	340.8	495.95	1.455	462.4	364.46	529.5	447.6	422.7756832	224.9624328	563.9622051	317.1392538	M5_p20	1.628571429	1.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.137	159	0	0	NA	18qB3	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	0.588957392	sgMsh2	cell line
chr18	37941753	37941753	A	G	ENSMUST00000043498.8	1	ENSMUSG00000024454	missense	S/P	312	Hdac3	ENSMUST00000043498.8:c.934T>C	ENSMUSP00000037981.7:p.Ser312Pro	H-2-Kb	9	4	8	RCWTYETPL	RCWTYETSL	SMMPMBEC	408.555	698.634	1.71	309	0.217	457.95	789.442	1.724	880.25	477.4	638	438.5	1244.829868	714.6773197	698.6344547	408.5545015	M5_p20	-0.7	-0.7	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.223	309	0	0	NA	18qB3	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	0.958667872	sgMsh2	cell line
chr18	75519813	75519813	T	C	ENSMUST00000165559.2	5	ENSMUSG00000052928	missense	K/E	458	Ctif	ENSMUST00000165559.2:c.1372A>G	ENSMUSP00000129974.1:p.Lys458Glu	H-2-Kb	9	3	9	RSFAFTAAE	RSFAFTAAK	SMM	476.552	1897.186	3.981	55	0.236	497.378	1583.55	3.184	1412.21	511.42	1327.6	1067	1897.186388	476.5516746	1754.890407	483.3369531	M5_p20	0.971428571	1.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.229	55	0	0	NA	18qE3	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	0.984461626	sgMsh2	cell line
chr18	24017798	24017798	CA	C	ENSMUST00000066497.11	1	ENSMUSG00000051469	FS	L/X	97	Zfp24	ENSMUST00000066497.11:c.290del	ENSMUSP00000064637.5:p.Leu97TrpfsTer31	H-2-Kb	9	16	0	PSYPRSYRL	NA	SMM	79.82	NA	NA	51	0.353	228.119	NA	NA	NA	511.59	NA	329.4	NA	79.81968324	NA	126.8381795	M5_p20	-1.457142857	-1.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.357	51	0	0	NA	18qA2	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr17	87679899	87679899	G	A	ENSMUST00000024967.13	1	ENSMUSG00000024151	missense	D/N	156	Msh2	ENSMUST00000024967.13:c.466G>A	ENSMUSP00000024967.7:p.Asp156Asn	H-2-Kb	9	10	2	VNGQRHVGV	VDGQRHVGV	SMMPMBEC	285.924	1183.723	4.14	606	0.101	489.72	7481.039	15.276	13020.7	594.75	16443.9	1559.9	1941.377536	384.6892055	1183.722765	285.9235978	M5_p20	-0.514285714	-0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.101	606	0	0	NA	17qE4	chr17-87672302-87723786	18.50797381	15.50797381	3	0.97	4.169990295	NA	2	0.434194866	sgMsh2	cell line
chr18	44847844	44847844	A	G	ENSMUST00000037763.10	1	ENSMUSG00000034653	missense	Q/R	502	Ythdc2	ENSMUST00000037763.10:c.1505A>G	ENSMUSP00000048340.7:p.Gln502Arg	H-2-Kb	9	7	5	DAFARVFHL	DAFAQVFHL	NetMHCpan	355	1026.1	2.89	159	0.145	436.068	1456.594	3.34	1952.22	609.77	1026.1	355	1233.417199	408.4228203	1679.770694	463.713778	M5_p20	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.137	159	0	0	NA	18qB3	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	0.588957392	sgMsh2	cell line
chr2	24953277	24953277	T	C	ENSMUST00000028350.8	1	ENSMUSG00000026974	missense	V/A	87	Zmynd19	ENSMUST00000028350.8:c.260T>C	ENSMUSP00000028350.3:p.Val87Ala	H-2-Db	9	10	2	VAHLNAVTV	VVHLNAVTV	NetMHC	8.32	172.04	20.678	153	0.248	28.28	261.657	9.252	172.04	8.32	293.9	20.7	229.4140437	35.86080216	327.0167515	51.23538453	M5_p20	0.942857143	1.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.242	153	0	0	NA	2qA3	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Db	9	5	9	SNVVNHFFV	SNVVNHFFC	NetMHC	33.28	4264.52	128.141	317	0.136	169.809	3110.826	18.32	4264.52	33.28	4326.5	48.8	1957.131469	290.8171406	1310.901318	321.7881152	M5_p20	1.642857143	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.134	317	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.576060515	sgMsh2	cell line
chr19	4623890	4623890	GA	G	ENSMUST00000025823.5	1	ENSMUSG00000024889	FS	F/X	209	Rce1	ENSMUST00000025823.5:c.627del	ENSMUSP00000025823.3:p.His210ThrfsTer45	H-2-Db	9	6	7	FGVAHFTTL	FGVAHFHHI	NetMHC	78.17	566.54	7.248	121	0.182	379.077	1263.979	3.334	566.54	78.17	279.3	137.9	2796.533332	844.5395646	1961.417293	620.2546088	M5_p20	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.177	121	0	0	NA	19qA	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	sgMsh2	cell line
chr2	24687761	24687761	A	G	ENSMUST00000041342.11	1	ENSMUSG00000004113	missense	L/P	700	Cacna1b	ENSMUST00000041342.11:c.2099T>C	ENSMUSP00000037416.5:p.Leu700Pro	H-2-Db	9	4	8	TLFGNYTPL	TLFGNYTLL	NetMHCpan	113.2	549.8	4.857	106	0.236	218.505	712.435	3.26	2806.17	647.6	549.8	113.2	840.6592577	260.9876759	584.2113633	176.0232357	M5_p20	-0.128571429	-1.27E-16	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	106	0	0	NA	2qA3	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr2	22577871	22577871	T	C	ENSMUST00000044749.13	5	ENSMUSG00000025716	missense	V/A	1317	Myo3a	ENSMUST00000044749.13:c.3950T>C	ENSMUSP00000046329.7:p.Val1317Ala	H-2-Db	9	10	2	SAVTQNAPL	SVVTQNAPL	SMMPMBEC	357.742	2283.337	6.383	110	0.209	496.921	3714.743	7.476	9108.98	745.43	4105.8	474.3	3323.686094	519.5412082	2283.336925	357.7420571	M5_p20	0.071428571	0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.208	110	0	0	NA	2qA3	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	0.894183486	sgMsh2	cell line
chr19	10207246	10207246	T	G	ENSMUST00000040372.13	1	ENSMUSG00000036372	missense	F/V	66	Tmem258	ENSMUST00000040372.13:c.196T>G	ENSMUSP00000044751.7:p.Phe66Val	H-2-Kb	8	11	1	VGVLFLLL	FGVLFLLL	NetMHC	19.2	194.49	10.13	270	0.137	37.169	178.287	4.797	194.49	19.2	271.5	29.8	162.0839455	44.53895263	157.666708	44.53895263	M5_p20	3.114285714	3.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.142	270	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.610452187	sgMsh2	cell line
chr19	44973627	44973627	T	C	ENSMUST00000096053.4	1	ENSMUSG00000036097	missense	I/T	1081	Slf2	ENSMUST00000096053.4:c.3242T>C	ENSMUSP00000093758.3:p.Ile1081Thr	H-2-Kb	8	8	4	LTYTLLHL	LTYILLHL	NetMHCpan	21.4	34.2	1.598	803	0.139	46.318	52.591	1.135	36.2	30.3	34.2	21.4	74.08665723	69.6209588	68.98267002	62.33615346	M5_p20	0.785714286	0.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.141	803	0	0	NA	19qC3	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.606153228	sgMsh2	cell line
chr19	10207246	10207246	T	G	ENSMUST00000040372.13	1	ENSMUSG00000036372	missense	F/V	66	Tmem258	ENSMUST00000040372.13:c.196T>G	ENSMUSP00000044751.7:p.Phe66Val	H-2-Kb	8	4	8	VASLFMGV	VASLFMGF	NetMHC	37.83	202.78	5.36	270	0.137	128.266	476.977	3.719	202.78	37.83	174.7	78.4	810.4757034	178.1312026	751.173053	216.6406749	M5_p20	1.9	1.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.142	270	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.610452187	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	8	13	1	VTFPHYWL	NA	NetMHCpan	13.9	NA	NA	317	0.136	31.617	NA	NA	NA	50.29	NA	13.9	NA	24.5323979	NA	38.70258739	M5_p20	-0.157142857	-0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.134	317	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.576060515	sgMsh2	cell line
chr2	23511388	23511388	T	G	ENSMUST00000132484.6	5	ENSMUSG00000026771	missense	E/D	369	Spopl	ENSMUST00000132484.6:c.1107A>C	ENSMUSP00000114974.1:p.Glu369Asp	H-2-Kb	8	9	3	VADAFRAL	VAEAFRAL	SMM	49.061	49.974	1.019	220	0.214	56.349	52.832	0.938	55.69	51.78	164.6	187.5	49.97352678	49.06140712	47.06954498	60.91720937	M5_p20	0.571428571	0.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.198	220	0	0	NA	2qA3	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	0.851193895	sgMsh2	cell line
chr19	31585637	31585637	CG	C	ENSMUST00000073581.5	1	ENSMUSG00000052920	FS	P/X	136	Prkg1	ENSMUST00000073581.5:c.408del	ENSMUSP00000073268.4:p.Val137TrpfsTer34	H-2-Kb	8	31	0	TSWKMGRL	NA	NetMHCpan	56.5	NA	NA	209	0.1	63.201	NA	NA	NA	69.55	NA	56.5	NA	82.36448742	NA	56.85124764	M5_p20	-0.685714286	-0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.093	209	0	0	NA	19qC1	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.399803193	sgMsh2	cell line
chr19	10848751	10848751	T	C	ENSMUST00000025646.2	1	ENSMUSG00000024737	missense	F/L	269	Slc15a3	ENSMUST00000025646.2:c.805T>C	ENSMUSP00000025646.2:p.Phe269Leu	H-2-Kb	8	4	8	SSMLKLAL	SSMLKLAF	NetMHC	146.88	1357.02	9.239	133	0.15	360.455	4049.132	11.233	1357.02	146.88	989	184.2	10179.81768	626.2388407	6741.243274	536.7103866	M5_p20	1.485714286	1.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.146	133	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.627648024	sgMsh2	cell line
chr19	44973627	44973627	T	C	ENSMUST00000096053.4	1	ENSMUSG00000036097	missense	I/T	1081	Slf2	ENSMUST00000096053.4:c.3242T>C	ENSMUSP00000093758.3:p.Ile1081Thr	H-2-Kb	8	5	7	AYYLTYTL	AYYLTYIL	NetMHC	157.88	325.67	2.063	803	0.139	364.856	839.945	2.302	325.67	157.88	374.5	180.5	1305.389154	569.823033	1434.630303	549.2119775	M5_p20	0.328571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.141	803	0	0	NA	19qC3	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.606153228	sgMsh2	cell line
chr19	44973627	44973627	T	C	ENSMUST00000096053.4	1	ENSMUSG00000036097	missense	I/T	1081	Slf2	ENSMUST00000096053.4:c.3242T>C	ENSMUSP00000093758.3:p.Ile1081Thr	H-2-Kb	8	6	6	YYLTYTLL	YYLTYILL	NetMHCpan	165.3	361.7	2.188	803	0.139	245.167	350.171	1.428	417.91	195.39	361.7	165.3	333.2268594	301.8144301	338.6413603	294.9442949	M5_p20	1.057142857	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.141	803	0	0	NA	19qC3	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.606153228	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	8	8	6	VNHFFVTF	VNHFFCDI	NetMHCpan	52.1	72.4	1.39	317	0.136	262.687	291.68	1.11	265.13	217.24	72.4	52.1	318.2291802	353.7854762	330.1718172	308.1342684	M5_p20	0.742857143	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.134	317	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.576060515	sgMsh2	cell line
chr19	8931147	8931147	AC	A	ENSMUST00000096241.5	1	ENSMUSG00000071647	FS	P/X	100	Eml3	ENSMUST00000096241.5:c.302del	ENSMUSP00000093960.4:p.Pro101LeufsTer3	H-2-Kb	8	5	8	IVPSSGPL	IVPSSGPP	NetMHC	224.96	26425.71	117.468	120	0.125	321.776	15819.215	49.162	26425.71	224.96	22974	540.7	7494.454029	309.5565516	8664.430052	333.9950266	M5_p20	0.4	0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.121	120	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.520174047	sgMsh2	cell line
chr2	24687761	24687761	A	G	ENSMUST00000041342.11	1	ENSMUSG00000004113	missense	L/P	700	Cacna1b	ENSMUST00000041342.11:c.2099T>C	ENSMUSP00000037416.5:p.Leu700Pro	H-2-Kb	8	5	7	LFGNYTPL	LFGNYTLL	SMMPMBEC	165.097	454.716	2.754	106	0.236	222.376	562.888	2.531	663.17	251.67	614.4	324.9	511.3755976	193.0812048	454.715753	165.0973111	M5_p20	-0.128571429	-0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	106	0	0	NA	2qA3	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr19	6071366	6071366	C	T	ENSMUST00000025711.12	1	ENSMUSG00000024797	missense	V/M	209	Vps51	ENSMUST00000025711.12:c.625G>A	ENSMUSP00000025711.5:p.Val209Met	H-2-Kb	8	11	1	MLQQYQHL	VLQQYQHL	SMM	169.723	79.568	0.469	181	0.11	237.403	85.462	0.36	52.88	281.28	106.4	327.7	79.56828547	169.7227266	91.35661511	193.5263029	M5_p20	-1.057142857	-1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.113	181	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.485782375	sgMsh2	cell line
chr19	9006308	9006308	A	C	ENSMUST00000092956.3	1	ENSMUSG00000069833	missense	N/T	1652	Ahnak	ENSMUST00000092956.3:c.4955A>C	ENSMUSP00000090633.2:p.Asn1652Thr	H-2-Kb	8	10	2	VTLQKANI	VNLQKANI	SMMPMBEC	266.526	332.46	1.247	343	0.19	287.35	306.278	1.066	289.9	285.14	268.5	411.4	322.6561891	289.5609548	332.4604589	266.5262568	M5_p20	-0.214285714	-0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.195	343	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.838297018	sgMsh2	cell line
chr19	34112952	34112952	GA	G	ENSMUST00000025685.7	1	ENSMUSG00000056078	FS	K/X	178	Lipm	ENSMUST00000025685.7:c.536del	ENSMUSP00000025685.6:p.Lys179ArgfsTer24	H-2-Kb	8	20	0	RAPPWALL	NA	NetMHCpan	207	NA	NA	391	0.182	415.089	NA	NA	NA	290.99	NA	207	NA	539.1877292	NA	614.8086937	M5_p20	1.014285714	1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.18	391	0	0	NA	19qC1	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.773812632	sgMsh2	cell line
chr19	6927164	6927164	A	T	ENSMUST00000025908.7	1	ENSMUSG00000024957	missense	L/Q	244	Kcnk4	ENSMUST00000025908.7:c.731T>A	ENSMUSP00000025908.6:p.Leu244Gln	H-2-Kb	8	11	1	QAYFASVL	LAYFASVL	NetMHCpan	116.4	47.7	0.41	145	0.207	327.256	250.624	0.766	249.63	311.95	47.7	116.4	251.6170116	342.5626424	286.906244	584.4400914	M5_p20	1.757142857	1.757142857	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.208	145	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.894183486	sgMsh2	cell line
chr19	54046882	54046882	C	A	ENSMUST00000036700.6	NA	ENSMUSG00000033717	missense	P/H	223	Adra2a	ENSMUST00000036700.6:c.668C>A	ENSMUSP00000036203.5:p.Pro223His	H-2-Kb	8	7	5	SFFAHCLI	SFFAPCLI	SMM	221.687	1238.055	5.585	114	0.281	278.718	1509.566	5.416	1724.04	357.12	1306.2	257.7	1238.055176	221.6868845	1712.931516	299.7367541	M5_p20	2.142857143	2.142857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.273	114	0	0	NA	19qD2	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	2	1	sgMsh2	cell line
chr19	10054643	10054643	A	G	ENSMUST00000115995.3	1	ENSMUSG00000024664	missense	H/R	266	Fads3	ENSMUST00000115995.3:c.797A>G	ENSMUSP00000111659.2:p.His266Arg	H-2-Kb	8	11	1	RQHLYFFL	HQHLYFFL	SMMPMBEC	135.75	290.228	2.138	346	0.113	153.427	437.353	2.851	1305.83	369.59	505.1	167.3	369.6068402	139.5532644	290.2284617	135.7500506	M5_p20	0.742857143	0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.113	346	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.485782375	sgMsh2	cell line
chr19	54046882	54046882	C	A	ENSMUST00000036700.6	NA	ENSMUSG00000033717	missense	P/H	223	Adra2a	ENSMUST00000036700.6:c.668C>A	ENSMUSP00000036203.5:p.Pro223His	H-2-Kb	8	5	7	IGSFFAHC	IGSFFAPC	NetMHCpan	249.3	191.4	0.768	114	0.281	393.799	262.109	0.666	416.7	493.59	191.4	249.3	253.3611374	388.8123042	270.8569601	398.7860888	M5_p20	0.785714286	1.071428571	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.273	114	0	0	NA	19qD2	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	2	1	sgMsh2	cell line
chr19	5336070	5336070	AC	A	ENSMUST00000043380.4	1	ENSMUSG00000038498	FS	H/X	110	Catsper1	ENSMUST00000043380.4:c.334del	ENSMUSP00000045430.3:p.Ala113LeufsTer182	H-2-Kb	8	140	0	ISIIAPQV	NA	SMM	432.255	NA	NA	374	0.19	485.488	NA	NA	NA	526.61	NA	568.7	NA	432.2549746	NA	444.3651588	M5_p20	1.3	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.185	374	0	0	NA	19qA	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	8	17	0	HYWLFLAL	NA	SMMPMBEC	198.948	NA	NA	317	0.136	324.952	NA	NA	NA	632.06	NA	372.1	NA	277.8049629	NA	198.9481935	M5_p20	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.134	317	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.576060515	sgMsh2	cell line
chr19	16383254	16383254	G	A	ENSMUST00000025541.5	1	ENSMUSG00000024639	missense	V/M	314	Gnaq	ENSMUST00000025541.5:c.940G>A	ENSMUSP00000025541.5:p.Val314Met	H-2-Kb	8	6	6	ILKMFMDL	ILKMFVDL	NetMHCpan	249.7	319.7	1.28	249	0.43	388.374	474.546	1.222	1460.9	633.96	319.7	249.7	595.3056439	459.9811133	353.7854762	316.7670499	M5_p20	0.971428571	1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.436	249	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	3	1	sgMsh2	cell line
chr19	5336070	5336070	AC	A	ENSMUST00000043380.4	1	ENSMUSG00000038498	FS	H/X	110	Catsper1	ENSMUST00000043380.4:c.334del	ENSMUSP00000045430.3:p.Ala113LeufsTer182	H-2-Kb	8	60	0	INNTMRGL	NA	SMM	218.645	NA	NA	374	0.19	495.63	NA	NA	NA	903.69	NA	746.5	NA	218.6452264	NA	244.7597495	M5_p20	-0.985714286	-0.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.185	374	0	0	NA	19qA	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	sgMsh2	cell line
chr19	13479544	13479544	A	T	ENSMUST00000080801.1	NA	ENSMUSG00000096708	missense	L/H	218	Olfr1475	ENSMUST00000080801.1:c.653T>A	ENSMUSP00000079616.1:p.Leu218His	H-2-Kb	8	7	5	NTYLHIFI	NTYLLIFI	NetMHCpan	431.8	1823.5	4.223	724	0.098	465.707	1406.869	3.021	3886.7	1649.52	1823.5	431.8	990.238939	446.4162552	974.4061133	484.9980584	M5_p20	1.485714286	1.485714286	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.098	724	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.421297989	sgMsh2	cell line
chr19	5336070	5336070	AC	A	ENSMUST00000043380.4	1	ENSMUSG00000038498	FS	H/X	110	Catsper1	ENSMUST00000043380.4:c.334del	ENSMUSP00000045430.3:p.Ala113LeufsTer182	H-2-Kb	9	181	0	LALKFSAKL	NA	NetMHC	22.93	NA	NA	374	0.19	106.573	NA	NA	NA	22.93	NA	26.4	NA	191.9154771	NA	186.7454375	M5_p20	0.514285714	1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.185	374	0	0	NA	19qA	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	sgMsh2	cell line
chr19	6071366	6071366	C	T	ENSMUST00000025711.12	1	ENSMUSG00000024797	missense	V/M	209	Vps51	ENSMUST00000025711.12:c.625G>A	ENSMUSP00000025711.5:p.Val209Met	H-2-Kb	9	10	2	AMLQQYQHL	AVLQQYQHL	NetMHC	38.61	44.27	1.147	181	0.11	105.972	175.274	1.654	44.27	38.61	101.6	97.1	248.9487787	114.8444468	263.7849417	129.7926202	M5_p20	-1.057142857	-0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.113	181	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.485782375	sgMsh2	cell line
chr19	44973627	44973627	T	C	ENSMUST00000096053.4	1	ENSMUSG00000036097	missense	I/T	1081	Slf2	ENSMUST00000096053.4:c.3242T>C	ENSMUSP00000093758.3:p.Ile1081Thr	H-2-Kb	9	5	7	AYYLTYTLL	AYYLTYILL	NetMHC	38.65	71.83	1.858	803	0.139	52.197	70.367	1.348	71.83	38.65	163.4	63.7	44.06664633	41.69749833	68.90488306	62.69746764	M5_p20	1.057142857	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.141	803	0	0	NA	19qC3	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.606153228	sgMsh2	cell line
chr2	24687761	24687761	A	G	ENSMUST00000041342.11	1	ENSMUSG00000004113	missense	L/P	700	Cacna1b	ENSMUST00000041342.11:c.2099T>C	ENSMUSP00000037416.5:p.Leu700Pro	H-2-Kb	9	4	8	TLFGNYTPL	TLFGNYTLL	NetMHCpan	51	85.6	1.678	106	0.236	88.814	134.728	1.517	105.68	60.07	85.6	51	193.2457716	151.7434661	163.775902	117.5574075	M5_p20	-0.128571429	-1.27E-16	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	106	0	0	NA	2qA3	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr19	13479544	13479544	A	T	ENSMUST00000080801.1	NA	ENSMUSG00000096708	missense	L/H	218	Olfr1475	ENSMUST00000080801.1:c.653T>A	ENSMUSP00000079616.1:p.Leu218His	H-2-Kb	9	4	8	VILNTYLHI	VILNTYLLI	NetMHC	67.3	135.34	2.011	724	0.098	145.859	203.471	1.395	135.34	67.3	239	102	180.3474475	189.7186388	226.5948317	217.8963724	M5_p20	0.485714286	1.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.098	724	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.421297989	sgMsh2	cell line
chr19	6927164	6927164	A	T	ENSMUST00000025908.7	1	ENSMUSG00000024957	missense	L/Q	244	Kcnk4	ENSMUST00000025908.7:c.731T>A	ENSMUSP00000025908.6:p.Leu244Gln	H-2-Kb	9	9	3	FGQAYFASV	FGLAYFASV	NetMHC	69.21	25.06	0.362	145	0.207	485.11	182.98	0.377	25.06	69.21	27.7	76.4	409.3643322	1049.808295	338.259498	893.8198597	M5_p20	0.714285714	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.208	145	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.894183486	sgMsh2	cell line
chr19	4623890	4623890	GA	G	ENSMUST00000025823.5	1	ENSMUSG00000024889	FS	F/X	209	Rce1	ENSMUST00000025823.5:c.627del	ENSMUSP00000025823.3:p.His210ThrfsTer45	H-2-Kb	9	6	7	FGVAHFTTL	FGVAHFHHI	NetMHCpan	50.7	186.1	3.671	121	0.182	234.465	853.581	3.641	718.04	82.34	186.1	50.7	1191.543769	453.0123063	989.1223154	386.5894518	M5_p20	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.177	121	0	0	NA	19qA	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	9	13	1	VTFPHYWLF	NA	NetMHCpan	32	NA	NA	317	0.136	35.13	NA	NA	NA	109.74	NA	32	NA	35.08407252	NA	35.17628732	M5_p20	0.342857143	0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.134	317	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.576060515	sgMsh2	cell line
chr19	54046882	54046882	C	A	ENSMUST00000036700.6	NA	ENSMUSG00000033717	missense	P/H	223	Adra2a	ENSMUST00000036700.6:c.668C>A	ENSMUSP00000036203.5:p.Pro223His	H-2-Kb	9	4	8	SIGSFFAHC	SIGSFFAPC	NetMHC	139.75	131.22	0.939	114	0.281	383.447	327.792	0.855	131.22	139.75	327.3	327.1	332.7438214	445.7691405	328.2842143	439.7947088	M5_p20	0.785714286	1.414285714	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.273	114	0	0	NA	19qD2	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	2	1	sgMsh2	cell line
chr19	44973627	44973627	T	C	ENSMUST00000096053.4	1	ENSMUSG00000036097	missense	I/T	1081	Slf2	ENSMUST00000096053.4:c.3242T>C	ENSMUSP00000093758.3:p.Ile1081Thr	H-2-Kb	9	4	8	QAYYLTYTL	QAYYLTYIL	NetMHCpan	118.9	287.1	2.415	803	0.139	148.952	306.938	2.061	357.17	145.46	287.1	118.9	170.2589693	152.4438821	326.7758854	276.8534884	M5_p20	0.328571429	0.328571429	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.141	803	0	0	NA	19qC3	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.606153228	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	9	7	7	VVNHFFVTF	VVNHFFCDI	SMM	104.018	301.377	2.897	317	0.136	110.553	279.147	2.525	290.84	180.67	126.9	112.4	301.3769268	104.0183595	267.4545558	108.7051201	M5_p20	0.742857143	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.134	317	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.576060515	sgMsh2	cell line
chr19	18854204	18854204	TA	T	ENSMUST00000040489.8	1	ENSMUSG00000024727	FS	K/X	1478	Trpm6	ENSMUST00000040489.8:c.4439del	ENSMUSP00000037443.7:p.Lys1480SerfsTer79	H-2-Kb	9	8	6	FSFKKSGKL	FSFKKKWKT	NetMHCpan	109.2	5384.2	49.306	245	0.208	190.937	4032.024	21.117	9553.84	214.17	5384.2	109.2	2679.847002	205.1681772	1619.011748	176.7054726	M5_p20	-0.9	-0.6	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2082	245	0	0	NA	19qB	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.895043278	sgMsh2	cell line
chr19	13586087	13586087	C	A	ENSMUST00000216014.2	2	ENSMUSG00000096289	missense	P/H	261	Olfr1484	ENSMUST00000216014.2:c.782C>A	ENSMUSP00000150019.2:p.Pro261His	H-2-Kb	9	4	8	IIFMYLQHS	IIFMYLQPS	SMM	112.748	84.161	0.746	1062	0.109	190.322	166.471	0.875	218.06	226.74	229.3	233.4	84.16082809	112.7482994	114.8814742	153.9040328	M5_p20	-0.042857143	1.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.123	1062	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.528771965	sgMsh2	cell line
chr19	5336070	5336070	AC	A	ENSMUST00000043380.4	1	ENSMUSG00000038498	FS	H/X	110	Catsper1	ENSMUST00000043380.4:c.334del	ENSMUSP00000045430.3:p.Ala113LeufsTer182	H-2-Kb	9	43	0	VNLCPTPPL	NA	SMM	191.034	NA	NA	374	0.19	220.98	NA	NA	NA	228.86	NA	213.1	NA	191.0337056	NA	262.57296	M5_p20	0.657142857	0.657142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.185	374	0	0	NA	19qA	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	sgMsh2	cell line
chr19	13705333	13705333	A	G	ENSMUST00000216366.1	5	ENSMUSG00000051156	missense	T/A	169	Olfr1491	ENSMUST00000216366.1:c.505A>G	ENSMUSP00000149071.1:p.Thr169Ala	H-2-Kb	9	6	6	TALIFALPF	TALIFTLPF	NetMHC	239.87	221.04	0.921	549	0.144	260.671	213.815	0.82	221.04	239.87	225.8	251.5	206.5903351	269.8422814	205.7074402	286.5827198	M5_p20	2.557142857	2.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.153	549	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.657740737	sgMsh2	cell line
chr19	5336070	5336070	AC	A	ENSMUST00000043380.4	1	ENSMUSG00000038498	FS	H/X	110	Catsper1	ENSMUST00000043380.4:c.334del	ENSMUSP00000045430.3:p.Ala113LeufsTer182	H-2-Kb	9	32	0	IIPTKMTPI	NA	NetMHC	258.37	NA	NA	374	0.19	447.852	NA	NA	NA	258.37	NA	377.8	NA	680.9418088	NA	517.9048762	M5_p20	-0.3	0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.185	374	0	0	NA	19qA	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	sgMsh2	cell line
chr19	16383254	16383254	G	A	ENSMUST00000025541.5	1	ENSMUSG00000024639	missense	V/M	314	Gnaq	ENSMUST00000025541.5:c.940G>A	ENSMUSP00000025541.5:p.Val314Met	H-2-Kb	9	5	7	FILKMFMDL	FILKMFVDL	NetMHC	268.8	623.27	2.319	249	0.43	358.268	502.216	1.402	623.27	268.8	645.4	411.6	381.1623536	362.3347605	317.8703353	354.201177	M5_p20	0.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.436	249	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	3	1	sgMsh2	cell line
chr19	54046882	54046882	C	A	ENSMUST00000036700.6	NA	ENSMUSG00000033717	missense	P/H	223	Adra2a	ENSMUST00000036700.6:c.668C>A	ENSMUSP00000036203.5:p.Pro223His	H-2-Kb	9	7	5	SFFAHCLIM	SFFAPCLIM	SMM	248.376	801.881	3.228	114	0.281	292.476	1028.88	3.518	884.89	340.13	1386.2	303.6	801.8811416	248.3762124	1172.87033	281.3519957	M5_p20	2.014285714	2.142857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.273	114	0	0	NA	19qD2	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	2	1	sgMsh2	cell line
chr19	13814832	13814832	C	CA	ENSMUST00000216659.1	5	ENSMUSG00000045395	FS	-/X	252-253	Olfr1499	ENSMUST00000216659.1:c.756dup	ENSMUSP00000150330.1:p.Gly253TrpfsTer20	H-2-Kb	9	8	5	ALFFWDPHL	NA	NetMHCpan	244.5	NA	NA	191	0.44	402.29	NA	NA	NA	436.24	NA	244.5	NA	462.4981501	NA	368.3409467	M5_p20	0.028571429	0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.426	191	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	3	1	sgMsh2	cell line
chr19	44973627	44973627	T	C	ENSMUST00000096053.4	1	ENSMUSG00000036097	missense	I/T	1081	Slf2	ENSMUST00000096053.4:c.3242T>C	ENSMUSP00000093758.3:p.Ile1081Thr	H-2-Kb	9	8	4	LTYTLLHLV	LTYILLHLV	NetMHCpan	420.8	764.9	1.818	803	0.139	426.798	410.951	0.963	451.86	440.77	764.9	420.8	360.6699835	420.8332054	370.0411313	432.7628777	M5_p20	1.485714286	1.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.141	803	0	0	NA	19qC3	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.606153228	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	9	17	0	HYWLFLALV	NA	SMM	304.166	NA	NA	317	0.136	437.286	NA	NA	NA	459.38	NA	1465.1	NA	304.1655332	NA	415.1929781	M5_p20	2.757142857	2.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.134	317	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.576060515	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	9	14	0	TFPHYWLFL	NA	NetMHCpan	353	NA	NA	317	0.136	400.076	NA	NA	NA	462.8	NA	353	NA	426.6875784	NA	373.4650797	M5_p20	0.485714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.134	317	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.576060515	sgMsh2	cell line
chr19	36089200	36089200	A	C	ENSMUST00000025714.8	1	ENSMUSG00000024800	missense	K/T	111	Rpp30	ENSMUST00000025714.8:c.332A>C	ENSMUSP00000025714.7:p.Lys111Thr	H-2-Kb	9	4	8	AVFPKTETL	AVFPKTEKL	NetMHCpan	271.7	319.8	1.177	467	0.167	491.68	554.98	1.129	1063.81	799.24	319.8	271.7	621.0263106	489.9028884	488.9337312	493.4577793	M5_p20	-0.542857143	-0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.165	467	0	0	NA	19qC2	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.709328246	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	9	16	0	PHYWLFLAL	NA	SMM	166.001	NA	NA	317	0.136	366.318	NA	NA	NA	971.99	NA	541.1	NA	166.0007308	NA	191.5358177	M5_p20	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.134	317	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.576060515	sgMsh2	cell line
chr2	87457903	87457903	C	T	ENSMUST00000213366.2	3	ENSMUSG00000058194	missense	T/I	246	Olfr1126	ENSMUST00000213366.2:c.737C>T	ENSMUSP00000150504.1:p.Thr246Ile	H-2-Db	9	9	3	FSICSSHLL	FSTCSSHLL	NetMHCpan	122.1	1810.1	14.825	556	0.169	310.97	2403.511	7.729	2360.1	147.02	1810.1	122.1	2446.921292	474.9194979	3225.299134	620.2546088	M5_p20	1.4	1.4	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.185	556	0	0	NA	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.795307427	sgMsh2	cell line
chr2	88006632	88006632	T	G	ENSMUST00000099839.3	NA	ENSMUSG00000075141	missense	M/L	49	Olfr1160	ENSMUST00000099839.3:c.145A>C	ENSMUSP00000097427.3:p.Met49Leu	H-2-Db	9	3	9	FSIYSITLL	FSIYSITLM	NetMHC	196.44	127.02	0.647	473	0.192	334.623	267.366	0.799	127.02	196.44	241.9	253.7	292.8329887	415.5468552	336.9535219	439.1066356	M5_p20	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.187	473	0	0	NA	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.803905345	sgMsh2	cell line
chr2	88006632	88006632	T	G	ENSMUST00000099839.3	NA	ENSMUSG00000075141	missense	M/L	49	Olfr1160	ENSMUST00000099839.3:c.145A>C	ENSMUSP00000097427.3:p.Met49Leu	H-2-Db	9	6	6	YSITLLGNI	YSITLMGNI	NetMHC	256.69	185.65	0.723	473	0.192	487.354	413.213	0.848	185.65	256.69	1299.1	1238	453.5445995	515.9647117	372.8807814	458.7435806	M5_p20	1.714285714	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.187	473	0	0	NA	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.803905345	sgMsh2	cell line
chr2	31207697	31207697	A	G	ENSMUST00000056433.6	1	ENSMUSG00000000194	missense	K/R	441	Gpr107	ENSMUST00000056433.6:c.1322A>G	ENSMUSP00000056739.5:p.Lys441Arg	H-2-Db	9	4	8	KAAINLARL	KAAINLAKL	NetMHCpan	101.4	102.4	1.01	238	0.231	325.555	235.751	0.724	167.68	392.01	102.4	101.4	303.8225469	298.2771604	364.3929785	352.8336521	M5_p20	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.234	238	0	0	NA	2qB	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr2	30103420	30103420	T	A	ENSMUST00000044751.13	1	ENSMUSG00000039686	missense	E/V	558	Zer1	ENSMUST00000044751.13:c.1673A>T	ENSMUSP00000046441.8:p.Glu558Val	H-2-Kb	8	10	2	MVFSWSAL	MEFSWSAL	NetMHCpan	15.7	862	54.904	84	0.143	18.808	400.12	21.274	683.36	17.07	862	15.7	116.8799454	23.16007706	104.169361	20.5466016	M5_p20	1.442857143	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.13	84	0	0	NA	2qB	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	0.558864679	sgMsh2	cell line
chr2	88006632	88006632	T	G	ENSMUST00000099839.3	NA	ENSMUSG00000075141	missense	M/L	49	Olfr1160	ENSMUST00000099839.3:c.145A>C	ENSMUSP00000097427.3:p.Met49Leu	H-2-Kb	8	4	8	SIYSITLL	SIYSITLM	NetMHC	23.89	82.42	3.45	473	0.192	68.167	260.849	3.827	82.42	23.89	64.5	24.2	480.5515695	119.8781411	439.2785529	112.1346934	M5_p20	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.187	473	0	0	NA	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.803905345	sgMsh2	cell line
chr2	88728850	88728850	C	CA	ENSMUST00000213118.1	5	ENSMUSG00000075119	FS	-/X	249-250	Olfr1197	ENSMUST00000213118.1:c.747dup	ENSMUSP00000150290.1:p.Gly250TrpfsTer14	H-2-Kb	8	7	6	VVLFFWAL	VVLFFGPC	SMM	13.205	97.441	7.379	421	0.159	22.017	195.967	8.901	359.72	30.82	282.1	27.9	97.44061133	13.20504848	109.8348092	16.13392375	M5_p20	2.614285714	2.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.169	421	0	0	NA	2qE1	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.726524082	sgMsh2	cell line
chr2	87434741	87434741	C	T	ENSMUST00000215909.1	5	ENSMUSG00000050772	missense	P/S	85	Olfr1124	ENSMUST00000215909.1:c.253C>T	ENSMUSP00000150244.1:p.Pro85Ser	H-2-Kb	8	6	6	VSITLSRM	VSITLPRM	NetMHC	33.46	65.95	1.971	216	0.046	81.965	113.523	1.385	65.95	33.46	78.2	62.6	148.8469706	103.6907462	152.6651821	101.3304567	M5_p20	0.485714286	0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.06	216	0	0	NA	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.257937544	sgMsh2	cell line
chr2	31207697	31207697	A	G	ENSMUST00000056433.6	1	ENSMUSG00000000194	missense	K/R	441	Gpr107	ENSMUST00000056433.6:c.1322A>G	ENSMUSP00000056739.5:p.Lys441Arg	H-2-Kb	8	5	7	AAINLARL	AAINLAKL	NetMHC	45.63	189.95	4.163	238	0.231	104.51	266.237	2.547	189.95	45.63	211.3	91.6	351.3500341	122.9532464	321.1737185	117.4194387	M5_p20	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.234	238	0	0	NA	2qB	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr2	85786374	85786374	T	C	ENSMUST00000215945.1	5	ENSMUSG00000033850	missense	F/L	288	Olfr1015	ENSMUST00000215945.1:c.862T>C	ENSMUSP00000148957.1:p.Phe288Leu	H-2-Kb	8	4	8	INPLLNPL	INPLLNPF	NetMHC	54.38	1179.23	21.685	213	0.197	137.353	1709.61	12.447	1179.23	54.38	1406.7	150.9	2012.51905	123.8055176	2012.51905	160.228586	M5_p20	0.171428571	0.271428571	FALSE	FALSE	FALSE	0	FALSE	2	Mutect2;Strelka2;MuSe;Vardict	4	0.217	213	0	0	NA	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.932874117	sgMsh2	cell line
chr2	69397705	69397705	GA	G	ENSMUST00000063690.3	1	ENSMUSG00000027068	FS	E/X	221	Dhrs9	ENSMUST00000063690.3:c.669del	ENSMUSP00000069631.3:p.Lys223AsnfsTer28	H-2-Kb	8	12	2	KNWPFGNI	NA	NetMHCpan	40.3	NA	NA	125	0.288	93.17	NA	NA	NA	62.82	NA	40.3	NA	125.8171954	NA	123.5207728	M5_p20	-0.371428571	-0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.285	125	0	0	NA	2qC2	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr2	40928017	40928017	CA	C	ENSMUST00000052550.12	1	ENSMUSG00000049252	FS	I/X	2400	Lrp1b	ENSMUST00000052550.12:c.7200del	ENSMUSP00000054275.7:p.Ile2400MetfsTer55	H-2-Kb	8	20	0	LVWQFMTV	NA	NetMHC	66.45	NA	NA	36	0.222	106.185	NA	NA	NA	66.45	NA	108.2	NA	133.2723329	NA	104.169361	M5_p20	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.282	36	0	0	NA	2qB	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr2	35715376	35715376	T	A	ENSMUST00000091010.11	1	ENSMUSG00000026883	missense	L/H	523	Dab2ip	ENSMUST00000091010.11:c.1568T>A	ENSMUSP00000088532.5:p.Leu523His	H-2-Kb	8	7	5	ASLFHRFL	ASLFLRFL	SMM	67.412	149.534	2.218	72	0.222	79.724	161.206	2.022	287.23	94.04	128.6	73.4	149.534017	67.41243274	172.8781076	86.04784535	M5_p20	0.671428571	0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.245	72	0	0	NA	2qB	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr2	86423160	86423160	T	A	ENSMUST00000217481.1	5	ENSMUSG00000090059	missense	N/I	172	Olfr1062	ENSMUST00000217481.1:c.515A>T	ENSMUSP00000149742.1:p.Asn172Ile	H-2-Kb	8	5	7	VSYCSSIV	VSYCSSNV	NetMHC	116.26	13.15	0.113	496	0.177	156.842	27.874	0.178	13.15	116.26	30	138.4	25.74779247	175.2830817	38.70258739	288.8949831	M5_p20	1.071428571	1.071428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.18	496	0	0	NA	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.773812632	sgMsh2	cell line
chr2	87002837	87002837	T	G	ENSMUST00000214002.1	5	ENSMUSG00000049843	missense	F/L	289	Olfr1102	ENSMUST00000214002.1:c.867T>G	ENSMUSP00000149634.1:p.Phe289Leu	H-2-Kb	8	8	4	VSTLYTIV	VSTFYTIV	NetMHC	116.69	148.52	1.273	387	0.225	152.172	177.23	1.165	148.52	116.69	49	120.8	205.9396641	183.5439188	295.6242117	245.8895091	M5_p20	1.285714286	1.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.235	387	0	0	NA	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr2	59815484	59815484	A	G	ENSMUST00000037526.10	5	ENSMUSG00000035168	missense	N/S	967	Tanc1	ENSMUST00000037526.10:c.2900A>G	ENSMUSP00000036003.4:p.Asn967Ser	H-2-Kb	8	11	1	SALCYAAA	NALCYAAA	NetMHC	120.24	4005.34	33.311	176	0.239	233.819	2621.952	11.214	4005.34	120.24	3796	459.3	1447.904774	227.8977303	1360.629867	239.7397234	M5_p20	1.742857143	1.742857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.235	176	0	0	NA	2qC1.1	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr2	31207697	31207697	A	G	ENSMUST00000056433.6	1	ENSMUSG00000000194	missense	K/R	441	Gpr107	ENSMUST00000056433.6:c.1322A>G	ENSMUSP00000056739.5:p.Lys441Arg	H-2-Kb	8	7	5	INLARLRL	INLAKLRL	NetMHCpan	74.3	156.3	2.104	238	0.231	185.389	321.112	1.732	315.08	157.11	156.3	74.3	327.1447838	213.6682534	353.7854762	227.3735801	M5_p20	0.1	0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.234	238	0	0	NA	2qB	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr2	88093684	88093684	C	T	ENSMUST00000099834.4	NA	ENSMUSG00000075136	missense	C/Y	84	Olfr1164	ENSMUST00000099834.4:c.251G>A	ENSMUSP00000097422.2:p.Cys84Tyr	H-2-Kb	8	8	4	VDFYYTSV	VDFCYTSV	SMMPMBEC	79.752	92.841	1.164	191	0.183	86.567	126.971	1.467	332.01	162.85	161.1	91.9	85.25895396	81.23440428	92.84104069	79.75170931	M5_p20	-0.085714286	-0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.18	191	0	0	NA	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.773812632	sgMsh2	cell line
chr2	76633559	76633559	C	G	ENSMUST00000002808.6	1	ENSMUSG00000002731	missense	G/A	253	Prkra	ENSMUST00000002808.6:c.758G>C	ENSMUSP00000002808.6:p.Gly253Ala	H-2-Kb	8	10	2	QAFNITYL	QGFNITYL	NetMHC	165.08	354.06	2.145	148	0.169	336.593	461.286	1.37	354.06	165.08	338	183.7	568.5124764	489.4856902	598.0534499	544.1767718	M5_p20	1.057142857	1.057142857	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.204	148	0	0	NA	2qC3	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	0.87698765	sgMsh2	cell line
chr2	87434741	87434741	C	T	ENSMUST00000215909.1	5	ENSMUSG00000050772	missense	P/S	85	Olfr1124	ENSMUST00000215909.1:c.253C>T	ENSMUSP00000150244.1:p.Pro85Ser	H-2-Kb	8	10	2	LSRMVFNL	LPRMVFNL	NetMHCpan	190.9	3693.1	19.346	216	0.046	207.26	2565.519	12.378	9794.89	309.84	3693.1	190.9	1424.754378	214.6545013	1437.937467	199.8664966	M5_p20	0.557142857	0.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.06	216	0	0	NA	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.257937544	sgMsh2	cell line
chr2	37405335	37405335	A	C	ENSMUST00000100143.9	5	ENSMUSG00000075376	missense	V/G	223	Rc3h2	ENSMUST00000100143.9:c.668T>G	ENSMUSP00000097721.3:p.Val223Gly	H-2-Kb	8	8	4	VLFGVQRL	VLFVVQRL	NetMHCpan	165.8	52.4	0.316	185	0.249	207.26	71.12	0.343	63.22	364.58	52.4	165.8	79.02054124	199.8664966	79.93555598	214.6545013	M5_p20	0.885714286	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.268	185	0	0	NA	2qB	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr2	88559672	88559672	T	G	ENSMUST00000090701.4	NA	ENSMUSG00000068809	missense	L/V	68	Olfr1188	ENSMUST00000090701.4:c.202T>G	ENSMUSP00000088202.2:p.Leu68Val	H-2-Kb	8	9	3	FFVTFLSL	FFLTFLSL	SMM	112.393	50.669	0.451	286	0.077	259.024	142.948	0.552	223.56	392.23	296.5	427	50.66872779	112.3931906	62.33615346	125.8171954	M5_p20	2.271428571	2.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.091	286	0	0	NA	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.391205275	sgMsh2	cell line
chr2	87457903	87457903	C	T	ENSMUST00000213366.2	3	ENSMUSG00000058194	missense	T/I	246	Olfr1126	ENSMUST00000213366.2:c.737C>T	ENSMUSP00000150504.1:p.Thr246Ile	H-2-Kb	8	9	3	FSICSSHL	FSTCSSHL	SMM	313.141	992.522	3.17	556	0.169	383.816	2090.074	5.446	3147.7	400.57	2856.6	454.8	992.5216755	313.1410475	1323.548926	367.0624846	M5_p20	0.742857143	0.742857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.185	556	0	0	NA	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.795307427	sgMsh2	cell line
chr2	86217093	86217093	A	G	ENSMUST00000213987.2	5	ENSMUSG00000075197	missense	S/P	206	Olfr1046	ENSMUST00000213987.2:c.616T>C	ENSMUSP00000148873.1:p.Ser206Pro	H-2-Kb	8	8	4	LIFPGCNL	LIFSGCNL	NetMHCpan	204.5	147.7	0.722	153	0.203	257.593	158.907	0.617	227.03	423.9	147.7	204.5	170.1139779	265.3016799	133.88749	249.8848923	M5_p20	1.157142857	1.157142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.224	153	0	0	NA	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.962966831	sgMsh2	cell line
chr2	86553750	86553750	C	A	ENSMUST00000213185.1	2	ENSMUSG00000110912	missense	A/S	125	Olfr1080	ENSMUST00000213185.1:c.373G>T	ENSMUSP00000150502.1:p.Ala125Ser	H-2-Kb	8	10	2	VSICKPLL	VAICKPLL	NetMHCpan	231.5	462.1	1.996	524	0.189	478.015	1095.373	2.292	826.98	424.24	462.1	231.5	1363.766443	531.7897962	1544.329616	584.4400914	M5_p20	1.185714286	1.242857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.196	524	0	0	NA	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.842595977	sgMsh2	cell line
chr2	86217093	86217093	A	G	ENSMUST00000213987.2	5	ENSMUSG00000075197	missense	S/P	206	Olfr1046	ENSMUST00000213987.2:c.616T>C	ENSMUSP00000148873.1:p.Ser206Pro	H-2-Kb	8	6	6	IILIFPGC	IILIFSGC	SMM	156.581	109.079	0.697	153	0.203	323.297	152.907	0.473	174.37	448.56	693	1041.5	109.0787117	156.5813381	131.4437679	198.0341096	M5_p20	2.3	2.585714286	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.224	153	0	0	NA	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.962966831	sgMsh2	cell line
chr2	85951347	85951347	A	G	ENSMUST00000080698.2	NA	ENSMUSG00000057207	missense	I/V	95	Olfr1028	ENSMUST00000080698.2:c.283A>G	ENSMUSP00000079522.1:p.Ile95Val	H-2-Kb	8	8	4	ISFVGCFI	ISFIGCFI	NetMHCpan	112.1	114.8	1.024	64	0.125	226.957	256.136	1.129	668.24	498.09	114.8	112.1	289.5609548	266.5262568	222.7101447	187.3872337	M5_p20	2.228571429	2.228571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;MuSe	2	0.147	64	0	0	NA	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.631946983	sgMsh2	cell line
chr2	88559672	88559672	T	G	ENSMUST00000090701.4	NA	ENSMUSG00000068809	missense	L/V	68	Olfr1188	ENSMUST00000090701.4:c.202T>G	ENSMUSP00000088202.2:p.Leu68Val	H-2-Kb	8	7	5	MYFFVTFL	MYFFLTFL	NetMHCpan	127.4	116.4	0.914	286	0.077	263.278	193.929	0.737	386.88	556.03	116.4	127.4	181.4429089	236.9954455	206.414404	289.5609548	M5_p20	2.057142857	2.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.091	286	0	0	NA	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.391205275	sgMsh2	cell line
chr2	88728850	88728850	C	CA	ENSMUST00000213118.1	5	ENSMUSG00000075119	FS	-/X	249-250	Olfr1197	ENSMUST00000213118.1:c.747dup	ENSMUSP00000150290.1:p.Gly250TrpfsTer14	H-2-Kb	8	9	4	LFFWALYL	NA	SMM	208.805	NA	NA	421	0.159	427.243	NA	NA	NA	599.39	NA	597.6	NA	208.8045702	NA	256.8857419	M5_p20	1.828571429	1.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.169	421	0	0	NA	2qE1	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.726524082	sgMsh2	cell line
chr2	88559672	88559672	T	G	ENSMUST00000090701.4	NA	ENSMUSG00000068809	missense	L/V	68	Olfr1188	ENSMUST00000090701.4:c.202T>G	ENSMUSP00000088202.2:p.Leu68Val	H-2-Kb	8	4	8	NSPMYFFV	NSPMYFFL	NetMHCpan	421.8	70.7	0.168	286	0.077	469.658	114.491	0.244	101.12	624.48	70.7	421.8	133.2723329	476.1458462	127.8615603	463.16955	M5_p20	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.091	286	0	0	NA	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.391205275	sgMsh2	cell line
chr2	87418268	87418268	AT	A	ENSMUST00000054974.1	NA	ENSMUSG00000043274	FS	Y/X	73	Olfr1123	ENSMUST00000054974.1:c.225del	ENSMUSP00000058786.1:p.Ser77AlafsTer11	H-2-Kb	8	11	5	YFFLATFL	YFFLSNFS	SMM	163.584	3004.277	18.365	191	0.241	388.902	8546.417	21.976	15586.04	709.46	11112.3	569	3004.277187	163.5836898	5980.534499	208.8045702	M5_p20	2.442857143	2.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.244	191	0	0	NA	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr2	85951575	85951575	T	C	ENSMUST00000080698.2	NA	ENSMUSG00000057207	missense	S/P	171	Olfr1028	ENSMUST00000080698.2:c.511T>C	ENSMUSP00000079522.1:p.Ser171Pro	H-2-Kb	8	6	6	MTFCKPNV	MTFCKSNV	NetMHCpan	389.7	283.5	0.727	225	0.191	482.997	327.825	0.679	552.24	987.77	283.5	389.7	306.71852	440.2911945	348.9313575	525.7024488	M5_p20	-0.028571429	-0.028571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.184	225	0	0	NA	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.791008468	sgMsh2	cell line
chr2	86553750	86553750	C	A	ENSMUST00000213185.1	2	ENSMUSG00000110912	missense	A/S	125	Olfr1080	ENSMUST00000213185.1:c.373G>T	ENSMUSP00000150502.1:p.Ala125Ser	H-2-Kb	9	4	8	MSYDRYVSI	MSYDRYVAI	NetMHCpan	8.9	9.3	1.045	524	0.189	21.999	21.056	0.957	15.55	17.13	9.3	8.9	32.36756285	33.50502914	26.56134116	26.86890699	M5_p20	-0.385714286	-0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.196	524	0	0	NA	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.842595977	sgMsh2	cell line
chr2	35715376	35715376	T	A	ENSMUST00000091010.11	1	ENSMUSG00000026883	missense	L/H	523	Dab2ip	ENSMUST00000091010.11:c.1568T>A	ENSMUSP00000088532.5:p.Leu523His	H-2-Kb	9	6	6	SASLFHRFL	SASLFLRFL	NetMHC	50.51	111.37	2.205	72	0.222	320.723	313.509	0.978	111.37	50.51	130.3	85.4	496.7181164	556.045077	701.8592048	674.916429	M5_p20	0.671428571	0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.245	72	0	0	NA	2qB	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr2	88728850	88728850	C	CA	ENSMUST00000213118.1	5	ENSMUSG00000075119	FS	-/X	249-250	Olfr1197	ENSMUST00000213118.1:c.747dup	ENSMUSP00000150290.1:p.Gly250TrpfsTer14	H-2-Kb	9	6	7	VVVLFFWAL	VVVLFFGPC	SMM	49.901	198.66	3.981	421	0.159	61.706	177.713	2.88	109.04	67.79	393.4	137.7	198.6598028	49.90108631	156.7653224	55.62243536	M5_p20	2.614285714	3.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.169	421	0	0	NA	2qE1	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.726524082	sgMsh2	cell line
chr2	30103420	30103420	T	A	ENSMUST00000044751.13	1	ENSMUSG00000039686	missense	E/V	558	Zer1	ENSMUST00000044751.13:c.1673A>T	ENSMUSP00000046441.8:p.Glu558Val	H-2-Kb	9	9	3	VMVFSWSAL	VMEFSWSAL	NetMHC	78.3	280.39	3.581	84	0.143	86.565	266.401	3.077	280.39	78.3	647.6	84.8	252.4120012	88.33035991	199.6411211	93.5944292	M5_p20	1.442857143	1.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.13	84	0	0	NA	2qB	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	0.558864679	sgMsh2	cell line
chr2	68118819	68118819	A	G	ENSMUST00000112346.2	NA	ENSMUSG00000034780	missense	S/G	293	B3galt1	ENSMUST00000112346.2:c.877A>G	ENSMUSP00000107965.2:p.Ser293Gly	H-2-Kb	9	10	2	YGLCRYRRV	YSLCRYRRV	NetMHC	124.84	39.29	0.315	366	0.164	342.339	134.347	0.392	39.29	124.84	116.2	280.8	165.6189397	475.4556362	152.4930322	403.8778168	M5_p20	-0.614285714	-0.614285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.166	366	0	0	NA	2qC1.3	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	0.713627205	sgMsh2	cell line
chr2	87418268	87418268	AT	A	ENSMUST00000054974.1	NA	ENSMUSG00000043274	FS	Y/X	73	Olfr1123	ENSMUST00000054974.1:c.225del	ENSMUSP00000058786.1:p.Ser77AlafsTer11	H-2-Kb	9	9	7	PMYFFLATF	PMYFFLSNF	SMM	28.848	25.889	0.897	191	0.241	98.916	75.468	0.763	107.26	153.65	210.7	394.8	25.88868552	28.84762076	43.67671833	44.18247089	M5_p20	1.714285714	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.244	191	0	0	NA	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr2	85777152	85777152	C	CA	ENSMUST00000213453.2	3	ENSMUSG00000059379	FS	-/X	189-190	Olfr1014	ENSMUST00000213453.2:c.572dup	ENSMUSP00000150352.1:p.Lys192GlufsTer78	H-2-Kb	9	72	0	VLWLHSLHL	NA	NetMHCpan	66.6	NA	NA	424	0.179	178.01	NA	NA	NA	157.36	NA	66.6	NA	198.6598028	NA	213.4273146	M5_p20	0.471428571	1.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.18	424	0	0	NA	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.773812632	sgMsh2	cell line
chr2	87418268	87418268	AT	A	ENSMUST00000054974.1	NA	ENSMUSG00000043274	FS	Y/X	73	Olfr1123	ENSMUST00000054974.1:c.225del	ENSMUSP00000058786.1:p.Ser77AlafsTer11	H-2-Kb	9	15	1	ATFLLWRYV	NA	NetMHC	157.8	NA	NA	191	0.241	303.496	NA	NA	NA	157.8	NA	209.7	NA	397.2921646	NA	406.6773641	M5_p20	1.128571429	1.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.244	191	0	0	NA	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr2	86423160	86423160	T	A	ENSMUST00000217481.1	5	ENSMUSG00000090059	missense	N/I	172	Olfr1062	ENSMUST00000217481.1:c.515A>T	ENSMUSP00000149742.1:p.Asn172Ile	H-2-Kb	9	3	9	FSVSYCSSI	FSVSYCSSN	NetMHC	168.7	11217.63	66.495	496	0.177	344.088	5986.187	17.397	11217.63	168.7	9824	192.6	2148.374555	495.5756965	1486.791262	526.3201534	M5_p20	1.071428571	1.071428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.18	496	0	0	NA	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.773812632	sgMsh2	cell line
chr2	88559672	88559672	T	G	ENSMUST00000090701.4	NA	ENSMUSG00000068809	missense	L/V	68	Olfr1188	ENSMUST00000090701.4:c.202T>G	ENSMUSP00000088202.2:p.Leu68Val	H-2-Kb	9	8	4	YFFVTFLSL	YFFLTFLSL	SMM	162.222	158.529	0.977	286	0.077	200.895	206.039	1.026	177.52	171.39	262.9	230.4	158.5294672	162.2220929	234.557865	251.9126636	M5_p20	2.271428571	2.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.091	286	0	0	NA	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.391205275	sgMsh2	cell line
chr2	31207697	31207697	A	G	ENSMUST00000056433.6	1	ENSMUSG00000000194	missense	K/R	441	Gpr107	ENSMUST00000056433.6:c.1322A>G	ENSMUSP00000056739.5:p.Lys441Arg	H-2-Kb	9	7	5	INLARLRLF	INLAKLRLF	SMM	221.366	331.215	1.496	238	0.231	236.336	355.812	1.506	295.92	230.43	501.3	275	331.2150024	221.3655323	380.4083139	242.2423104	M5_p20	1	1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.234	238	0	0	NA	2qB	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr2	30103420	30103420	T	A	ENSMUST00000044751.13	1	ENSMUSG00000039686	missense	E/V	558	Zer1	ENSMUST00000044751.13:c.1673A>T	ENSMUSP00000046441.8:p.Glu558Val	H-2-Kb	9	10	2	MVFSWSALW	MEFSWSALW	NetMHC	234.27	3276.8	13.987	84	0.143	425.683	2422.227	5.69	3276.8	234.27	3942.4	694.9	1510.462682	398.2080176	1567.653224	453.1583638	M5_p20	0.714285714	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.13	84	0	0	NA	2qB	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	0.558864679	sgMsh2	cell line
chr2	85777152	85777152	C	CA	ENSMUST00000213453.2	3	ENSMUSG00000059379	FS	-/X	189-190	Olfr1014	ENSMUST00000213453.2:c.572dup	ENSMUSP00000150352.1:p.Lys192GlufsTer78	H-2-Kb	9	39	0	LSLHHCHYL	NA	NetMHCpan	145.4	NA	NA	424	0.179	249.438	NA	NA	NA	237.51	NA	145.4	NA	312.6871254	NA	261.3665468	M5_p20	-0.114285714	-0.042857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.18	424	0	0	NA	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.773812632	sgMsh2	cell line
chr2	88559672	88559672	T	G	ENSMUST00000090701.4	NA	ENSMUSG00000068809	missense	L/V	68	Olfr1188	ENSMUST00000090701.4:c.202T>G	ENSMUSP00000088202.2:p.Leu68Val	H-2-Kb	9	6	6	PMYFFVTFL	PMYFFLTFL	SMM	58.225	29.861	0.513	286	0.077	128.913	104.842	0.813	173.72	251.11	165.4	182.1	29.86138865	58.22506741	44.28432201	75.72686885	M5_p20	2.057142857	2.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.091	286	0	0	NA	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.391205275	sgMsh2	cell line
chr2	35715376	35715376	T	A	ENSMUST00000091010.11	1	ENSMUSG00000026883	missense	L/H	523	Dab2ip	ENSMUST00000091010.11:c.1568T>A	ENSMUSP00000088532.5:p.Leu523His	H-2-Kb	9	5	7	ISASLFHRF	ISASLFLRF	NetMHCpan	141.1	141.7	1.004	72	0.222	241.26	183.257	0.76	281.9	294.17	141.7	141.1	162.2220929	209.4642929	204.2913602	273.0549161	M5_p20	0.385714286	1.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.245	72	0	0	NA	2qB	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr2	88728850	88728850	C	CA	ENSMUST00000213118.1	5	ENSMUSG00000075119	FS	-/X	249-250	Olfr1197	ENSMUST00000213118.1:c.747dup	ENSMUSP00000150290.1:p.Gly250TrpfsTer14	H-2-Kb	9	8	5	VLFFWALYL	NA	NetMHCpan	159.2	NA	NA	421	0.159	200.074	NA	NA	NA	315.14	NA	159.2	NA	198.6598028	NA	201.4883776	M5_p20	1.828571429	2.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.169	421	0	0	NA	2qE1	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.726524082	sgMsh2	cell line
chr2	86423160	86423160	T	A	ENSMUST00000217481.1	5	ENSMUSG00000090059	missense	N/I	172	Olfr1062	ENSMUST00000217481.1:c.515A>T	ENSMUSP00000149742.1:p.Asn172Ile	H-2-Kb	9	5	7	VSYCSSIVI	VSYCSSNVI	SMM	223.929	194.585	0.869	496	0.177	269.289	272.085	1.01	472.86	367.58	305.8	288.4	194.5852873	223.9288243	238.3691237	250.1785091	M5_p20	1.828571429	1.828571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.18	496	0	0	NA	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.773812632	sgMsh2	cell line
chr2	88728850	88728850	C	CA	ENSMUST00000213118.1	5	ENSMUSG00000075119	FS	-/X	249-250	Olfr1197	ENSMUST00000213118.1:c.747dup	ENSMUSP00000150290.1:p.Gly250TrpfsTer14	H-2-Kb	9	7	6	VVLFFWALY	VVLFFGPCI	SMM	53.47	466.778	8.73	421	0.159	218.622	436.26	1.996	939.54	368.97	287.4	2497.6	466.7775928	53.46997733	405.7420321	68.27315929	M5_p20	1.828571429	2.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.169	421	0	0	NA	2qE1	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.726524082	sgMsh2	cell line
chr2	58287755	58287755	C	T	ENSMUST00000028178.13	1	ENSMUSG00000026834	missense	R/H	234	Acvr1c	ENSMUST00000028178.13:c.701G>A	ENSMUSP00000028178.7:p.Arg234His	H-2-Kb	9	7	5	RSWFHEAEI	RSWFREAEI	NetMHCpan	299.2	426.6	1.426	301	0.249	422.907	435.985	1.031	445.37	406.02	426.6	299.2	502.4698412	520.1277201	400.1750427	439.7947088	M5_p20	-0.285714286	-0.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.245	301	0	0	NA	2qC1.1	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr2	88093684	88093684	C	T	ENSMUST00000099834.4	NA	ENSMUSG00000075136	missense	C/Y	84	Olfr1164	ENSMUST00000099834.4:c.251G>A	ENSMUSP00000097422.2:p.Cys84Tyr	H-2-Kb	9	7	5	FVDFYYTSV	FVDFCYTSV	SMMPMBEC	337.482	1087.051	3.221	191	0.183	417.989	1398.541	3.346	1529.11	457.44	4358.1	764.7	1267.972983	378.5384504	1087.051201	337.4815227	M5_p20	-0.085714286	0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.18	191	0	0	NA	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.773812632	sgMsh2	cell line
chr2	85786374	85786374	T	C	ENSMUST00000215945.1	5	ENSMUSG00000033850	missense	F/L	288	Olfr1015	ENSMUST00000215945.1:c.862T>C	ENSMUSP00000148957.1:p.Phe288Leu	H-2-Kb	9	3	9	IINPLLNPL	IINPLLNPF	NetMHCpan	438.7	1653.4	3.769	213	0.197	476.268	1172.73	2.462	1420.23	481.44	1653.4	438.7	794.5294511	471.0966327	925.2306262	534.872168	M5_p20	0.171428571	1.142857143	FALSE	FALSE	FALSE	0	FALSE	2	Mutect2;Strelka2;MuSe;Vardict	4	0.217	213	0	0	NA	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.932874117	sgMsh2	cell line
chr2	87656102	87656102	A	AT	ENSMUST00000135875.3	5	ENSMUSG00000111747	FS	M/NX	273	Olfr1134	ENSMUST00000135875.3:c.817dup	ENSMUSP00000150837.1:p.Met273AsnfsTer23	H-2-Kb	9	20	0	DSYVKPTYL	NA	SMM	254.748	NA	NA	304	0.207	435.96	NA	NA	NA	486.22	NA	545.4	NA	254.7475407	NA	385.7003207	M5_p20	-0.114285714	-0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.204	304	0	0	NA	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.87698765	sgMsh2	cell line
chr2	88728850	88728850	C	CA	ENSMUST00000213118.1	5	ENSMUSG00000075119	FS	-/X	249-250	Olfr1197	ENSMUST00000213118.1:c.747dup	ENSMUSP00000150290.1:p.Gly250TrpfsTer14	H-2-Kb	9	10	3	FFWALYLYL	NA	SMM	227.567	NA	NA	421	0.159	401.182	NA	NA	NA	569.42	NA	1860.7	NA	227.567375	NA	232.9431801	M5_p20	1.385714286	1.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.169	421	0	0	NA	2qE1	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.726524082	sgMsh2	cell line
chr2	88093684	88093684	C	T	ENSMUST00000099834.4	NA	ENSMUSG00000075136	missense	C/Y	84	Olfr1164	ENSMUST00000099834.4:c.251G>A	ENSMUSP00000097422.2:p.Cys84Tyr	H-2-Kb	9	8	4	VDFYYTSVI	VDFCYTSVI	SMMPMBEC	259.567	326.024	1.256	191	0.183	355.835	517.65	1.455	1441.74	1032.28	592.6	391.7	442.7004873	319.9705442	326.0243217	259.5673122	M5_p20	1.057142857	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.18	191	0	0	NA	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.773812632	sgMsh2	cell line
chr2	158768178	158768178	C	T	ENSMUST00000029183.2	1	ENSMUSG00000027654	missense	P/L	22	Fam83d	ENSMUST00000029183.2:c.65C>T	ENSMUSP00000029183.2:p.Pro22Leu	H-2-Db	9	8	4	CGPLNPTEL	CGPPNPTEL	NetMHC	65.56	425.32	6.487	33	0.273	216.905	644.766	2.973	425.32	65.56	306.4	93.7	864.2114181	340.1104688	1154.968129	410.7428385	M5_p20	-0.471428571	-0.214285714	TRUE	FALSE	FALSE	1	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.336	33	0	0	NA	2qH1	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	2	1	sgMsh2	cell line
chr2	157120489	157120489	CT	C	ENSMUST00000057725.9	1	ENSMUSG00000027639	FS	K/X	262	Samhd1	ENSMUST00000057725.9:c.785del	ENSMUSP00000059717.3:p.Lys262SerfsTer25	H-2-Db	9	11	1	SGSTNRAPL	NA	SMMPMBEC	152.957	NA	NA	108	0.324	184.814	NA	NA	NA	213.09	NA	238.9	NA	156.538079	NA	152.9572264	M5_p20	-0.785714286	-0.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.314	108	0	0	NA	2qH1	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr2	121336461	121336461	T	G	ENSMUST00000052029.9	1	ENSMUSG00000033526	missense	S/R	870	Ppip5k1	ENSMUST00000052029.9:c.2608A>C	ENSMUSP00000057632.3:p.Ser870Arg	H-2-Db	9	11	1	RAISELNYM	SAISELNYM	NetMHCpan	138.7	63.8	0.46	183	0.251	375.561	214.339	0.571	146.47	381.66	63.8	138.7	340.1104688	520.7388744	282.2084413	369.4621898	M5_p20	0.157142857	0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.247	183	0	0	NA	2qE5	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr2	167617965	167617965	G	A	ENSMUST00000125544.2	5	ENSMUSG00000089739	missense	P/L	236	Gm20431	ENSMUST00000125544.2:c.707C>T	ENSMUSP00000118416.2:p.Pro236Leu	H-2-Db	9	9	3	KVLRNFRLL	KVPRNFRLL	SMM	356.96	1160.433	3.251	150	0.233	462.19	1382.892	2.992	2391.93	1641.49	845.3	441.8	1160.432811	356.9603675	1605.350989	482.5807566	M5_p20	0.242857143	0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.232	150	0	0	NA	2qH3	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	0.997358503	sgMsh2	cell line
chr2	131274254	131274254	T	C	ENSMUST00000183349.1	3	ENSMUSG00000037514	missense	I/T	24	Pank2	ENSMUST00000183349.1:c.70T>C	ENSMUSP00000139203.1:p.Ile24Thr	H-2-Kb	8	8	4	LSRTFSHL	LSRIFSHL	NetMHC	6.68	6.6	0.988	55	0.218	22.689	20.587	0.907	6.6	6.68	16.3	22.9	26.10597994	24.5323979	24.87367755	22.47708563	M5_p20	-0.485714286	-0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	55	0	0	NA	2qF1	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr2	153203878	153203878	G	T	ENSMUST00000089027.2	1	ENSMUSG00000068040	missense	V/L	557	Tm9sf4	ENSMUST00000089027.2:c.1669G>T	ENSMUSP00000086422.2:p.Val557Leu	H-2-Kb	8	8	4	IVMLYFQL	IVMVYFQL	NetMHC	8.02	7.34	0.915	70	0.214	10.703	11.07	1.034	7.34	8.02	9.5	9.5	20.88045702	18.78192059	12.63979412	11.90529058	M5_p20	1.671428571	1.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.186	70	0	0	NA	2qH1	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	0.799606386	sgMsh2	cell line
chr2	167617965	167617965	G	A	ENSMUST00000125544.2	5	ENSMUSG00000089739	missense	P/L	236	Gm20431	ENSMUST00000125544.2:c.707C>T	ENSMUSP00000118416.2:p.Pro236Leu	H-2-Kb	8	10	2	VLRNFRLL	VPRNFRLL	NetMHC	42.93	179.86	4.19	150	0.233	82.815	143.105	1.728	179.86	42.93	1509.6	100.7	75.1173053	77.57825382	106.3506136	88.05215715	M5_p20	0.242857143	0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.232	150	0	0	NA	2qH3	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	0.997358503	sgMsh2	cell line
chr2	132240580	132240580	A	G	ENSMUST00000110164.7	2	ENSMUSG00000027341	missense	F/S	90	Tmem230	ENSMUST00000110164.7:c.269T>C	ENSMUSP00000105793.1:p.Phe90Ser	H-2-Kb	8	11	1	SLPGFYHL	FLPGFYHL	NetMHCpan	98.2	522.1	5.317	161	0.217	164.475	459.527	2.794	694.44	114.79	522.1	98.2	387.9180607	214.1608096	396.9538331	229.4774419	M5_p20	0.557142857	0.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.229	161	0	0	NA	2qF2	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	0.984461626	sgMsh2	cell line
chr2	152004194	152004194	T	C	ENSMUST00000073228.11	1	ENSMUSG00000027463	missense	V/A	25	Slc52a3	ENSMUST00000073228.11:c.74T>C	ENSMUSP00000072961.5:p.Val25Ala	H-2-Kb	8	6	6	INGLWAEL	INGLWVEL	SMMPMBEC	144.125	415.662	2.884	79	0.203	176.594	546.352	3.094	646.97	156.97	525.5	212.8	567.204934	196.218522	415.6616909	144.1252256	M5_p20	0.157142857	0.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.225	79	0	0	NA	2qG3	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	0.96726579	sgMsh2	cell line
chr2	157120489	157120489	CT	C	ENSMUST00000057725.9	1	ENSMUSG00000027639	FS	K/X	262	Samhd1	ENSMUST00000057725.9:c.785del	ENSMUSP00000059717.3:p.Lys262SerfsTer25	H-2-Kb	8	26	0	SILMNSNL	NA	SMMPMBEC	145.459	NA	NA	108	0.324	177.292	NA	NA	NA	197.28	NA	272.8	NA	157.3040847	NA	145.4587999	M5_p20	0.885714286	0.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.314	108	0	0	NA	2qH1	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr2	119774213	119774213	C	A	ENSMUST00000110793.7	5	ENSMUSG00000034032	missense	G/W	405	Rpap1	ENSMUST00000110793.7:c.1213G>T	ENSMUSP00000106420.1:p.Gly405Trp	H-2-Kb	8	10	2	AWYSLQEL	AGYSLQEL	NetMHC	226.35	163.52	0.722	160	0.188	489.02	233.364	0.477	163.52	226.35	163.4	328.3	303.2075422	649.7405923	343.3523309	704.2713151	M5_p20	-0.342857143	-0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.181	160	0	0	NA	2qE5	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	0.778111591	sgMsh2	cell line
chr2	119139420	119139420	GT	G	ENSMUST00000094695.11	1	ENSMUSG00000070730	FS	T/X	387	Rmdn3	ENSMUST00000094695.11:c.1159del	ENSMUSP00000092283.5:p.Thr387ArgfsTer46	H-2-Kb	8	37	0	YSQDFQKL	NA	SMM	227.898	NA	NA	110	0.291	263.57	NA	NA	NA	233.55	NA	302.9	NA	227.8977303	NA	293.5891489	M5_p20	-1.228571429	-1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.259	110	0	0	NA	2qE5	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr2	167617965	167617965	G	A	ENSMUST00000125544.2	5	ENSMUSG00000089739	missense	P/L	236	Gm20431	ENSMUST00000125544.2:c.707C>T	ENSMUSP00000118416.2:p.Pro236Leu	H-2-Kb	8	9	3	KVLRNFRL	KVPRNFRL	NetMHC	274.86	581.44	2.115	150	0.233	336.838	777.83	2.309	581.44	274.86	616.5	308.3	1073.346637	457.867692	939.1608928	365.3759857	M5_p20	0.3	0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.232	150	0	0	NA	2qH3	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	0.997358503	sgMsh2	cell line
chr2	122798101	122798101	G	A	ENSMUST00000110506.8	1	ENSMUSG00000005803	missense	V/M	175	Sqor	ENSMUST00000110506.8:c.523G>A	ENSMUSP00000106133.2:p.Val175Met	H-2-Kb	8	4	8	SNYSVKTM	SNYSVKTV	NetMHCpan	208.3	441.3	2.119	123	0.301	422.209	474.578	1.124	553.57	406.15	441.3	208.3	390.6069803	438.2682402	507.8553127	549.2119775	M5_p20	-0.585714286	-0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.299	123	0	0	NA	2qE5	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr2	158495606	158495606	C	A	ENSMUST00000109485.8	1	ENSMUSG00000027652	missense	L/I	1496	Ralgapb	ENSMUST00000109485.8:c.4486C>A	ENSMUSP00000105111.2:p.Leu1496Ile	H-2-Kb	8	10	2	AIFQEVGL	ALFQEVGL	SMMPMBEC	137.006	468.533	3.42	153	0.235	277.086	992.844	3.583	2896.55	412.65	1197.3	363.3	788.3879904	190.8710225	468.5328006	137.0061303	M5_p20	1.128571429	1.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.261	153	0	0	NA	2qH1	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr2	155716199	155716199	C	T	ENSMUST00000040833.4	1	ENSMUSG00000038312	missense	M/I	171	Edem2	ENSMUST00000040833.4:c.513G>A	ENSMUSP00000041202.4:p.Met171Ile	H-2-Kb	8	9	3	TGIPYGTV	TGMPYGTV	NetMHCpan	219.8	186.7	0.849	79	0.241	430.483	515.16	1.197	467.02	419.66	186.7	219.8	652.7396586	441.3061706	563.3003227	468.5328006	M5_p20	0.614285714	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.249	79	0	0	NA	2qH1	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr2	94377654	94377654	A	C	ENSMUST00000111238.7	5	ENSMUSG00000027194	missense	L/V	204	Ttc17	ENSMUST00000111238.7:c.610T>G	ENSMUSP00000106869.1:p.Leu204Val	H-2-Kb	8	4	8	FTYLSKRV	FTYLSKRL	SMM	340.204	95.223	0.28	182	0.154	459.323	103.549	0.225	112.95	549.89	105.3	785.9	95.22259222	340.2044578	101.7981768	368.7567681	M5_p20	-0.457142857	-0.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.162	182	0	0	NA	2qE1	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.696431369	sgMsh2	cell line
chr2	155716199	155716199	C	T	ENSMUST00000040833.4	1	ENSMUSG00000038312	missense	M/I	171	Edem2	ENSMUST00000040833.4:c.513G>A	ENSMUSP00000041202.4:p.Met171Ile	H-2-Kb	8	11	1	IPYGTVNL	MPYGTVNL	SMM	153.723	307.426	2	79	0.241	415.142	1423.261	3.428	2508.66	674.78	2785.9	1338	307.4255792	153.7234066	337.8625068	155.5034397	M5_p20	0.071428571	0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.249	79	0	0	NA	2qH1	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr2	112241488	112241488	T	C	ENSMUST00000028554.3	1	ENSMUSG00000027134	missense	V/A	51	Lpcat4	ENSMUST00000028554.3:c.152T>C	ENSMUSP00000028554.3:p.Val51Ala	H-2-Kb	8	11	1	ALLAFIVL	VLLAFIVL	SMMPMBEC	224.254	65.424	0.292	110	0.091	421.067	108.762	0.258	278.12	1447.57	152.1	610	61.62259741	232.1346655	65.42443789	224.2538976	M5_p20	3.528571429	3.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.112	110	0	0	NA	2qE3	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	0.481483415	sgMsh2	cell line
chr2	132240580	132240580	A	G	ENSMUST00000110164.7	2	ENSMUSG00000027341	missense	F/S	90	Tmem230	ENSMUST00000110164.7:c.269T>C	ENSMUSP00000105793.1:p.Phe90Ser	H-2-Kb	9	10	2	VSLPGFYHL	VFLPGFYHL	NetMHC	22.77	187.13	8.218	161	0.217	93.901	246.108	2.621	187.13	22.77	200.4	30	291.8166046	157.8010905	341.3893746	169.9221522	M5_p20	0.557142857	0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.229	161	0	0	NA	2qF2	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	0.984461626	sgMsh2	cell line
chr2	172454295	172454295	T	C	ENSMUST00000099060.1	1	ENSMUSG00000074569	missense	H/R	203	Gcnt7	ENSMUST00000099060.1:c.608A>G	ENSMUSP00000096659.1:p.His203Arg	H-2-Kb	9	8	4	FQWRYVMNL	FQWHYVMNL	NetMHC	44.73	91.86	2.054	148	0.203	378.766	352.119	0.93	91.86	44.73	121.8	74.8	680.9418088	764.0292757	582.4383998	682.7315929	M5_p20	-0.042857143	-0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.218	148	0	0	NA	2qH3	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	0.937173077	sgMsh2	cell line
chr2	167617965	167617965	G	A	ENSMUST00000125544.2	5	ENSMUSG00000089739	missense	P/L	236	Gm20431	ENSMUST00000125544.2:c.707C>T	ENSMUSP00000118416.2:p.Pro236Leu	H-2-Kb	9	9	3	KVLRNFRLL	KVPRNFRLL	NetMHC	66.24	83.46	1.26	150	0.233	343.432	560.289	1.631	83.46	66.24	216.7	159.5	903.878383	527.3634174	1291.962773	684.3054518	M5_p20	0.242857143	0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.232	150	0	0	NA	2qH3	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	0.997358503	sgMsh2	cell line
chr2	153203878	153203878	G	T	ENSMUST00000089027.2	1	ENSMUSG00000068040	missense	V/L	557	Tm9sf4	ENSMUST00000089027.2:c.1669G>T	ENSMUSP00000086422.2:p.Val557Leu	H-2-Kb	9	7	5	SIVMLYFQL	SIVMVYFQL	NetMHC	70.15	150.66	2.148	70	0.214	130.943	265.72	2.029	150.66	70.15	264.6	126.6	338.1504736	162.2220929	266.8394274	135.2851103	M5_p20	1.671428571	2.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.186	70	0	0	NA	2qH1	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	0.799606386	sgMsh2	cell line
chr2	111335694	111335694	C	A	ENSMUST00000099618.1	NA	ENSMUSG00000096554	missense	R/M	128	Olfr1282	ENSMUST00000099618.1:c.383G>T	ENSMUSP00000097213.1:p.Arg128Met	H-2-Kb	9	10	2	CMPLHYSSI	CRPLHYSSI	NetMHC	94.4	1410.95	14.947	1111	0.249	136.949	1266.807	9.25	1410.95	94.4	2800.2	169.4	724.6194716	104.4984864	1122.664526	174.2809827	M5_p20	0.085714286	0.185714286	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.259	1111	0	0	NA	2qE3	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr2	89325694	89325694	G	T	ENSMUST00000213860.1	3	ENSMUSG00000075092	missense	T/N	162	Olfr1232	ENSMUST00000213860.1:c.485C>A	ENSMUSP00000150860.1:p.Thr162Asn	H-2-Kb	9	6	6	VQIIFNLQL	VQIIFTLQL	NetMHCpan	122.8	69.3	0.564	342	0.064	184.621	132.582	0.718	86	145.24	69.3	122.8	215.8291001	317.7678825	179.1636906	224.0010221	M5_p20	1.771428571	1.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.067	342	0	0	NA	2qE1	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.288030257	sgMsh2	cell line
chr2	89325694	89325694	G	T	ENSMUST00000213860.1	3	ENSMUSG00000075092	missense	T/N	162	Olfr1232	ENSMUST00000213860.1:c.485C>A	ENSMUSP00000150860.1:p.Thr162Asn	H-2-Kb	9	8	4	IIFNLQLPF	IIFTLQLPF	NetMHCpan	117	134.9	1.153	342	0.064	184.475	222.786	1.208	234.59	159.9	134.9	117	229.67303	221.3655323	215.8986864	209.0499173	M5_p20	0.657142857	1.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.067	342	0	0	NA	2qE1	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.288030257	sgMsh2	cell line
chr2	91284247	91284247	A	G	ENSMUST00000102594.10	1	ENSMUSG00000040591	missense	F/L	147	1110051M20Rik	ENSMUST00000102594.10:c.439T>C	ENSMUSP00000099654.4:p.Phe147Leu	H-2-Kb	9	8	4	QIQLYYSEF	QIQFYYSEF	SMM	177.873	191.034	1.074	228	0.193	233.567	248.13	1.062	224.46	181.21	352.1	442.3	191.0337056	177.8729877	271.8003427	285.9235978	M5_p20	-0.542857143	-0.3	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.199	228	0	0	NA	2qE1	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.855492854	sgMsh2	cell line
chr2	119139420	119139420	GT	G	ENSMUST00000094695.11	1	ENSMUSG00000070730	FS	T/X	387	Rmdn3	ENSMUST00000094695.11:c.1159del	ENSMUSP00000092283.5:p.Thr387ArgfsTer46	H-2-Kb	9	45	0	DGYIFLSAI	NA	NetMHC	187.49	NA	NA	110	0.291	309.473	NA	NA	NA	187.49	NA	212.4	NA	406.5462879	NA	510.7989549	M5_p20	2.185714286	2.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.259	110	0	0	NA	2qE5	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr2	91284247	91284247	A	G	ENSMUST00000102594.10	1	ENSMUSG00000040591	missense	F/L	147	1110051M20Rik	ENSMUST00000102594.10:c.439T>C	ENSMUSP00000099654.4:p.Phe147Leu	H-2-Kb	9	9	3	IQLYYSEFL	IQFYYSEFL	NetMHCpan	192.4	29.6	0.154	228	0.193	382.31	125.453	0.328	51.33	204.72	29.6	192.4	199.5767748	559.8993973	219.4067579	608.4851727	M5_p20	0.5	0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.199	228	0	0	NA	2qE1	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.855492854	sgMsh2	cell line
chr2	153203878	153203878	G	T	ENSMUST00000089027.2	1	ENSMUSG00000068040	missense	V/L	557	Tm9sf4	ENSMUST00000089027.2:c.1669G>T	ENSMUSP00000086422.2:p.Val557Leu	H-2-Kb	9	8	4	IVMLYFQLC	IVMVYFQLC	NetMHC	208.19	187.6	0.901	70	0.214	241.817	252.885	1.046	187.6	208.19	284.2	321.9	275.4926395	269.2216614	230.2767015	214.4124503	M5_p20	1.428571429	1.771428571	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.186	70	0	0	NA	2qH1	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	0.799606386	sgMsh2	cell line
chr2	91284247	91284247	A	G	ENSMUST00000102594.10	1	ENSMUSG00000040591	missense	F/L	147	1110051M20Rik	ENSMUST00000102594.10:c.439T>C	ENSMUSP00000099654.4:p.Phe147Leu	H-2-Kb	9	3	9	FLFAFQIQL	FLFAFQIQF	NetMHCpan	235.9	1129.7	4.789	228	0.193	317.333	742.822	2.341	735.56	268.86	1129.7	235.9	750.0841699	444.7438999	632.7760017	365.8053055	M5_p20	1.242857143	2.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.199	228	0	0	NA	2qE1	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.855492854	sgMsh2	cell line
chr2	117177703	117177703	A	G	ENSMUST00000028829.12	1	ENSMUSG00000027351	missense	I/M	363	Spred1	ENSMUST00000028829.12:c.1089A>G	ENSMUSP00000028829.6:p.Ile363Met	H-2-Kb	9	10	2	CMYQVSCML	CIYQVSCML	SMM	228.618	511.811	2.239	139	0.23	331.205	563.356	1.701	483.81	295.31	614.9	367.1	511.811453	228.6177783	851.6281337	411.386466	M5_p20	0.971428571	0.971428571	TRUE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.243	139	0	0	NA	2qE5	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr2	111379635	111379635	T	C	ENSMUST00000062407.5	5	ENSMUSG00000108931	missense	F/L	212	Olfr1284	ENSMUST00000062407.5:c.634T>C	ENSMUSP00000052153.4:p.Phe212Leu	H-2-Kb	9	5	7	MTLGTFLLL	MTLGTFFLL	NetMHCpan	246.9	192.4	0.779	328	0.299	312.574	264.729	0.847	258.37	322.38	192.4	246.9	271.0878168	302.7680195	408.5545015	416.1500968	M5_p20	2.414285714	2.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.274	328	0	0	NA	2qE3	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr2	119774213	119774213	C	A	ENSMUST00000110793.7	5	ENSMUSG00000034032	missense	G/W	405	Rpap1	ENSMUST00000110793.7:c.1213G>T	ENSMUSP00000106420.1:p.Gly405Trp	H-2-Kb	9	10	2	AWYSLQELF	AGYSLQELF	SMM	200.037	798.197	3.99	160	0.188	395.394	1041.581	2.634	1401.72	386.91	1071	1517.9	798.1968324	200.0368468	1012.161934	403.8778168	M5_p20	0.185714286	0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.181	160	0	0	NA	2qE5	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	0.778111591	sgMsh2	cell line
chr2	110794971	110794971	T	C	ENSMUST00000099623.9	5	ENSMUSG00000074968	missense	D/G	178	Ano3	ENSMUST00000099623.9:c.533A>G	ENSMUSP00000097219.3:p.Asp178Gly	H-2-Kb	9	8	4	IQYGKRNTF	IQYDKRNTF	SMM	282.56	301.377	1.067	184	0.261	497.094	448.238	0.902	1030.55	873.76	569.7	681.4	301.3769268	282.5595563	326.7758854	312.7879401	M5_p20	-1.642857143	-1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.282	184	0	0	NA	2qE3	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr2	180583499	180583499	A	G	ENSMUST00000029085.8	1	ENSMUSG00000027569	missense	T/A	83	Mrgbp	ENSMUST00000029085.8:c.247A>G	ENSMUSP00000029085.8:p.Thr83Ala	H-2-Db	9	10	2	SAMYDMQAL	STMYDMQAL	NetMHCpan	338.9	3104.4	9.16	136	0.176	412.293	3121.081	7.57	4556.07	341.95	3104.4	338.9	3137.762006	482.636319	2975.568825	520.6789256	M5_p20	0.157142857	0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.185	136	0	0	NA	2qH4	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	0.795307427	sgMsh2	cell line
chr3	80860236	80860236	AT	A	ENSMUST00000029654.14	1	ENSMUSG00000028020	FS	I/X	226	Glrb	ENSMUST00000029654.14:c.676del	ENSMUSP00000029654.8:p.Ile226LeufsTer37	H-2-Db	9	20	0	RRISNMATV	NA	SMMPMBEC	200.249	NA	NA	143	0.189	384.587	NA	NA	NA	531.15	NA	1363	NA	238.0235894	NA	200.2488359	M5_p20	1.057142857	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.193	143	0	0	NA	3qE3	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.8296991	sgMsh2	cell line
chr3	88895604	88895604	C	A	ENSMUST00000107498.8	1	ENSMUSG00000054199	missense	T/N	1174	Gon4l	ENSMUST00000107498.8:c.3521C>A	ENSMUSP00000103122.2:p.Thr1174Asn	H-2-Db	9	11	1	NLLVNPTTF	TLLVNPTTF	SMM	246.388	198.893	0.807	743	0.21	480.352	282.202	0.587	470.94	651.98	355.2	780.8	198.8932297	246.388254	209.2040077	308.7237209	M5_p20	0.614285714	0.757142857	FALSE	FALSE	FALSE	0	TRUE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.215	743	0	0	NA	3qF1	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.924276199	sgMsh2	cell line
chr3	86998896	86998896	T	G	ENSMUST00000029717.3	1	ENSMUSG00000028076	missense	K/T	24	Cd1d1	ENSMUST00000029717.3:c.71A>C	ENSMUSP00000029717.2:p.Lys24Thr	H-2-Kb	8	11	1	TNYTFRCL	KNYTFRCL	NetMHC	4.97	6.62	1.332	246	0.138	9.139	11.656	1.275	6.62	4.97	9.8	8.8	13.51263357	9.478508415	14.8504632	9.971029474	M5_p20	-0.128571429	-0.128571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.13	246	0	0	NA	3qF1	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.558864679	sgMsh2	cell line
chr2	180714861	180714861	A	G	ENSMUST00000078687.5	1	ENSMUSG00000027573	missense	N/S	97	Gid8	ENSMUST00000078687.5:c.290A>G	ENSMUSP00000077753.5:p.Asn97Ser	H-2-Kb	8	11	1	SRYLYFHL	NRYLYFHL	NetMHC	8.14	142.06	17.452	138	0.225	15.146	118.423	7.819	142.06	8.14	235.5	34.2	94.78508415	14.91900983	87.24489012	15.37234066	M5_p20	0.014285714	0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.204	138	0	0	NA	2qH4	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	0.87698765	sgMsh2	cell line
chr3	105005546	105005546	C	A	ENSMUST00000077548.11	1	ENSMUSG00000062127	missense	A/S	341	Cttnbp2nl	ENSMUST00000077548.11:c.1021G>T	ENSMUSP00000076751.5:p.Ala341Ser	H-2-Kb	8	11	1	SAYSYAKA	AAYSYAKA	NetMHC	11.09	24.13	2.176	123	0.228	44.921	75.024	1.67	24.13	11.09	53.5	32.2	129.0446488	68.82401428	96.54727043	57.64212727	M5_p20	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.247	123	0	0	NA	3qF2.2	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr3	89094889	89094889	A	T	ENSMUST00000196709.4	5	ENSMUSG00000059743	missense	Y/N	207	Fdps	ENSMUST00000196709.4:c.619T>A	ENSMUSP00000142770.1:p.Tyr207Asn	H-2-Kb	8	5	7	TAFYSFNL	TAFYSFYL	NetMHCpan	13.6	23	1.691	268	0.187	47.201	84.318	1.786	45.4	23.65	23	13.6	123.2366829	70.75220838	134.8155538	81.60936526	M5_p20	0.8	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.189	268	0	0	NA	3qF1	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.812503264	sgMsh2	cell line
chr3	108624645	108624645	A	G	ENSMUST00000051145.14	1	ENSMUSG00000040389	missense	Q/R	449	Wdr47	ENSMUST00000051145.14:c.1346A>G	ENSMUSP00000057482.8:p.Gln449Arg	H-2-Kb	8	11	1	RMYQQMLL	QMYQQMLL	NetMHC	67.4	94.29	1.399	172	0.198	121.812	213.148	1.75	94.29	67.4	182.1	93.4	244.1968177	150.2242346	524.4933667	251.0383085	M5_p20	0.442857143	0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.196	172	0	0	NA	3qF3	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.842595977	sgMsh2	cell line
chr3	105978389	105978389	T	G	ENSMUST00000000573.8	1	ENSMUSG00000074340	missense	L/R	200	Ovgp1	ENSMUST00000000573.8:c.599T>G	ENSMUSP00000000573.2:p.Leu200Arg	H-2-Kb	8	5	7	TSYDALRL	TSYDALLL	NetMHCpan	51.2	92.7	1.811	166	0.247	65.195	129.261	1.983	119.93	68.34	92.7	51.2	138.5925865	62.04974485	172.480499	72.90209351	M5_p20	-0.1	-0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.257	166	0	0	NA	3qF2.2	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr2	180583499	180583499	A	G	ENSMUST00000029085.8	1	ENSMUSG00000027569	missense	T/A	83	Mrgbp	ENSMUST00000029085.8:c.247A>G	ENSMUSP00000029085.8:p.Thr83Ala	H-2-Kb	8	11	1	AMYDMQAL	TMYDMQAL	NetMHCpan	73.9	56.7	0.767	136	0.176	127.758	106.842	0.836	70.22	74.49	56.7	73.9	143.4630303	181.0256018	185.6692572	236.4503711	M5_p20	0.157142857	0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.185	136	0	0	NA	2qH4	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	0.795307427	sgMsh2	cell line
chr3	28794409	28794409	G	A	ENSMUST00000060500.8	1	ENSMUSG00000050192	missense	C/Y	139	Eif5a2	ENSMUST00000060500.8:c.416G>A	ENSMUSP00000050289.7:p.Cys139Tyr	H-2-Kb	8	7	5	VSVMYAMS	VSVMCAMS	SMM	72.734	814.217	11.194	368	0.326	100.979	2855.808	28.281	5114.17	120.91	4897.4	389.8	814.2166892	72.73442335	792.027024	81.04757034	M5_p20	0.985714286	1.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.321	368	0	0	NA	3qA3	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	2	1	sgMsh2	cell line
chr3	88449737	88449737	A	G	ENSMUST00000029700.11	1	ENSMUSG00000028064	missense	L/P	309	Sema4a	ENSMUST00000029700.11:c.926T>C	ENSMUSP00000029700.5:p.Leu309Pro	H-2-Kb	8	5	7	IIRHAVPL	IIRHAVLL	SMM	169.332	448.477	2.649	114	0.325	247.434	538.144	2.175	1021.35	349.03	569.6	310.9	448.476819	169.3323751	506.6872779	183.9670312	M5_p20	0.714285714	0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.346	114	0	0	NA	3qF1	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	2	1	sgMsh2	cell line
chr3	107311516	107311516	C	CT	ENSMUST00000029502.13	1	ENSMUSG00000027896	FS	L/LX	478	Slc16a4	ENSMUST00000029502.13:c.1440dup	ENSMUSP00000029502.7:p.Val481CysfsTer5	H-2-Kb	8	9	6	VSLFFCTT	VSLFFVPL	NetMHCpan	99	3.7	0.037	187	0.209	150.102	2.995	0.02	3.56	384.31	3.7	99	2.252890066	166.6249377	2.430748352	133.5795574	M5_p20	1.385714286	2.085714286	FALSE	FALSE	FALSE	1	FALSE	0	Strelka2;Vardict	2	0.2086	187	0	0	NA	3qF2.3	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.896762861	sgMsh2	cell line
chr3	90190923	90190923	C	T	ENSMUST00000029548.8	5	ENSMUSG00000027939	missense	S/L	1394	Nup210l	ENSMUST00000029548.8:c.4181C>T	ENSMUSP00000029548.4:p.Ser1394Leu	H-2-Kb	8	8	4	RTLLAFPL	RTLSAFPL	NetMHCpan	184	237.9	1.293	313	0.217	202.884	249.781	1.231	490.66	429.13	237.9	184	235.9065504	193.0812048	261.6616044	212.686537	M5_p20	1.957142857	1.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	313	0	0	NA	3qF1	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.971564749	sgMsh2	cell line
chr3	68927791	68927791	A	G	ENSMUST00000107812.7	5	ENSMUSG00000027778	missense	I/T	439	Ift80	ENSMUST00000107812.7:c.1316T>C	ENSMUSP00000103442.1:p.Ile439Thr	H-2-Kb	8	11	1	TIFLFEAS	IIFLFEAS	SMM	114.483	40.902	0.357	144	0.125	496.639	214.122	0.431	378.83	1363.31	368.3	827.8	40.90157201	114.482736	59.94321055	165.4778997	M5_p20	1.628571429	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.126	144	0	0	NA	3qE1	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.541668842	sgMsh2	cell line
chr3	89266743	89266743	T	G	ENSMUST00000107462.7	3	ENSMUSG00000042737	missense	L/V	4	Dpm3	ENSMUST00000107462.7:c.10T>G	ENSMUSP00000103086.1:p.Leu4Val	H-2-Kb	8	4	1	VTQWLWGL	LTQWLWGL	SMM	283.622	1434.63	5.058	101	0.337	404.513	1559.675	3.856	6651.54	1488.78	1453.1	408.4	1434.630303	283.6220554	1666.249377	400.6268017	M5_p20	0.171428571	0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.388	101	0	0	NA	3qF1	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	2	1	sgMsh2	cell line
chr3	88083991	88083991	A	G	ENSMUST00000071812.10	1	ENSMUSG00000028068	missense	Y/C	33	Iqgap3	ENSMUST00000071812.10:c.98A>G	ENSMUSP00000071715.5:p.Tyr33Cys	H-2-Kb	9	7	5	VAYQCLCRL	VAYQYLCRL	NetMHC	18.28	4.91	0.269	147	0.327	35.488	9.601	0.271	4.91	18.28	4.3	23.1	14.29255921	47.87513372	15.42588183	49.68782653	M5_p20	0.471428571	1.428571429	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.319	147	0	0	NA	3qF1	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	2	1	sgMsh2	cell line
chr3	83837498	83837498	T	C	ENSMUST00000029623.10	1	ENSMUSG00000027995	missense	H/R	426	Tlr2	ENSMUST00000029623.10:c.1277A>G	ENSMUSP00000029623.9:p.His426Arg	H-2-Kb	9	5	7	ISRNTFRPM	ISRNTFHPM	NetMHC	27	47.58	1.762	210	0.31	174.184	149.869	0.86	47.58	27	105.6	143.2	194.1377536	205.1681772	239.4693856	265.6134116	M5_p20	-1.442857143	-0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.319	210	0	0	NA	3qE3	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	2	1	sgMsh2	cell line
chr2	180714861	180714861	A	G	ENSMUST00000078687.5	1	ENSMUSG00000027573	missense	N/S	97	Gid8	ENSMUST00000078687.5:c.290A>G	ENSMUSP00000077753.5:p.Asn97Ser	H-2-Kb	9	10	2	TSRYLYFHL	TNRYLYFHL	NetMHC	31.73	61.26	1.931	138	0.225	64.842	81.222	1.253	61.26	31.73	45.4	34.6	101.1835704	95.08455975	115.9444594	104.2917608	M5_p20	0.014285714	0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.204	138	0	0	NA	2qH4	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	0.87698765	sgMsh2	cell line
chr3	89231054	89231054	T	C	ENSMUST00000041142.3	1	ENSMUSG00000042784	missense	V/A	401	Muc1	ENSMUST00000041142.3:c.1202T>C	ENSMUSP00000041963.3:p.Val401Ala	H-2-Kb	9	5	7	SSYYSTAPF	SSYYSTVPF	NetMHC	39.69	96.89	2.441	241	0.349	59.853	105.341	1.76	96.89	39.69	82.9	40.8	113.7915466	78.90599489	136.536888	100.7511472	M5_p20	-0.157142857	-0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.356	241	0	0	NA	3qF1	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	2	1	sgMsh2	cell line
chr2	180583499	180583499	A	G	ENSMUST00000029085.8	1	ENSMUSG00000027569	missense	T/A	83	Mrgbp	ENSMUST00000029085.8:c.247A>G	ENSMUSP00000029085.8:p.Thr83Ala	H-2-Kb	9	4	8	VIWDHLSAM	VIWDHLSTM	NetMHCpan	73.8	57.5	0.779	136	0.176	77.793	86.56	1.113	88.57	75.95	57.5	73.8	84.54929682	79.63610307	91.88613834	85.35913393	M5_p20	-0.128571429	0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.185	136	0	0	NA	2qH4	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	0.795307427	sgMsh2	cell line
chr3	89094889	89094889	A	T	ENSMUST00000196709.4	5	ENSMUSG00000059743	missense	Y/N	207	Fdps	ENSMUST00000196709.4:c.619T>A	ENSMUSP00000142770.1:p.Tyr207Asn	H-2-Kb	9	6	6	AFYSFNLPI	AFYSFYLPI	NetMHCpan	93	24.1	0.259	268	0.187	133.272	23.85	0.179	23.6	125.58	24.1	93	19.05943402	140.9645794	27.30549161	179.5767056	M5_p20	0.557142857	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.189	268	0	0	NA	3qF1	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.812503264	sgMsh2	cell line
chr3	68927791	68927791	A	G	ENSMUST00000107812.7	5	ENSMUSG00000027778	missense	I/T	439	Ift80	ENSMUST00000107812.7:c.1316T>C	ENSMUSP00000103442.1:p.Ile439Thr	H-2-Kb	9	11	1	TIFLFEAST	IIFLFEAST	NetMHC	181.4	78.59	0.433	144	0.125	236.705	140.504	0.594	78.59	181.4	219.4	418.7	139.6722084	239.3922023	141.3350901	234.0183969	M5_p20	0.885714286	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.126	144	0	0	NA	3qE1	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.541668842	sgMsh2	cell line
chr3	80860236	80860236	AT	A	ENSMUST00000029654.14	1	ENSMUSG00000028020	FS	I/X	226	Glrb	ENSMUST00000029654.14:c.676del	ENSMUSP00000029654.8:p.Ile226LeufsTer37	H-2-Kb	9	6	6	VQLEKLLYL	VQLEKIALP	NetMHC	204.77	13999.81	68.368	143	0.189	281.513	8030.813	28.527	13999.81	204.77	16761.3	288.8	1256.348137	274.2268658	2061.816449	309.2074862	M5_p20	0.928571429	0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.193	143	0	0	NA	3qE3	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.8296991	sgMsh2	cell line
chr3	95008482	95008482	T	C	ENSMUST00000019482.7	1	ENSMUSG00000019338	missense	K/R	993	Zfp687	ENSMUST00000019482.7:c.2978A>G	ENSMUSP00000019482.1:p.Lys993Arg	H-2-Kb	9	8	4	SVKRFPCRL	SVKKFPCRL	NetMHCpan	181.6	255.5	1.407	64	0.328	436.752	462.473	1.059	295.28	204.99	255.5	181.6	629.6656471	668.5132201	679.5947262	729.8775406	M5_p20	-0.771428571	-0.185714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.325	64	0	0	NA	3qF2.1	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	2	1	sgMsh2	cell line
chr3	28895683	28895683	GA	G	ENSMUST00000099170.1	1	ENSMUSG00000074655	FS	K/X	31	Gm1527	ENSMUST00000099170.1:c.100del	ENSMUSP00000096773.1:p.Arg34AspfsTer16	H-2-Kb	9	19	0	LMMSWLCRV	NA	SMM	184.974	NA	NA	96	0.385	260.623	NA	NA	NA	265.24	NA	399.7	NA	184.9737069	NA	256.0059151	M5_p20	0.885714286	1.742857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.402	96	0	0	NA	3qA3	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	2	1	sgMsh2	cell line
chr3	89094889	89094889	A	T	ENSMUST00000196709.4	5	ENSMUSG00000059743	missense	Y/N	207	Fdps	ENSMUST00000196709.4:c.619T>A	ENSMUSP00000142770.1:p.Tyr207Asn	H-2-Kb	9	4	8	KTAFYSFNL	KTAFYSFYL	NetMHCpan	77.9	114.4	1.469	268	0.187	368.731	477.313	1.294	513.96	265.28	114.4	77.9	440.6664633	472.1826226	644.5401859	668.728758	M5_p20	0.8	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.189	268	0	0	NA	3qF1	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.812503264	sgMsh2	cell line
chr3	86998896	86998896	T	G	ENSMUST00000029717.3	1	ENSMUSG00000028076	missense	K/T	24	Cd1d1	ENSMUST00000029717.3:c.71A>C	ENSMUSP00000029717.2:p.Lys24Thr	H-2-Kb	9	11	1	TNYTFRCLQ	KNYTFRCLQ	SMM	213.85	324.422	1.517	246	0.138	353.035	540.441	1.531	688.01	483.61	1400.9	960.8	324.4217779	213.850367	392.8710251	222.4590099	M5_p20	-0.128571429	-0.128571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.13	246	0	0	NA	3qF1	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.558864679	sgMsh2	cell line
chr3	125713338	125713338	G	T	ENSMUST00000173932.7	5	ENSMUSG00000027971	missense	R/M	717	Ndst4	ENSMUST00000173932.7:c.2150G>T	ENSMUSP00000133341.2:p.Arg717Met	H-2-Db	9	9	3	ALMFNFYEV	ALRFNFYEV	NetMHC	197.64	8177.77	41.377	159	0.346	266.339	3452.617	12.963	8177.77	197.64	3672.5	234.4	2948.6281	298.2771604	3232.734217	309.4354026	M5_p20	0.485714286	1.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.342	159	0	0	NA	3qG1	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	2	1	sgMsh2	cell line
chr4	45307923	45307923	CT	C	ENSMUST00000044673.8	1	ENSMUSG00000035601	FS	L/X	203	Trmt10b	ENSMUST00000044673.8:c.612del	ENSMUSP00000041052.2:p.Pro205LeufsTer8	H-2-Db	9	9	5	FSLFLWKPL	FSLFPLETL	SMM	212.628	545.281	2.564	297	0.367	281.074	540.89	1.924	345.62	310.63	884.2	463.6	545.2805415	212.6277776	536.5003381	251.518538	M5_p20	1.114285714	1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.366	297	0	0	NA	4qB1	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr3	155137385	155137385	AT	A	ENSMUST00000194376.1	1	ENSMUSG00000028182	FS	N/X	298	Lrriq3	ENSMUST00000194376.1:c.897del	ENSMUSP00000142127.1:p.His300ThrfsTer32	H-2-Db	9	7	7	KLWVNFTEV	NA	SMMPMBEC	272.001	NA	NA	229	0.166	443.324	NA	NA	NA	666.64	NA	596.5	NA	290.1482797	NA	272.0006864	M5_p20	0.371428571	0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.17	229	0	0	NA	3qH4	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.730823041	sgMsh2	cell line
chr3	123479673	123479673	A	G	ENSMUST00000029603.9	1	ENSMUSG00000027978	missense	N/S	306	Prss12	ENSMUST00000029603.9:c.917A>G	ENSMUSP00000029603.8:p.Asn306Ser	H-2-Kb	8	11	1	STYVACRL	NTYVACRL	NetMHC	12.64	327.83	25.936	263	0.24	25.429	206.593	8.124	327.83	12.64	224.5	22.3	181.4429089	28.55880296	188.68614	33.24604589	M5_p20	0.828571429	0.828571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	263	0	0	NA	3qG1	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr3	125713338	125713338	G	T	ENSMUST00000173932.7	5	ENSMUSG00000027971	missense	R/M	717	Ndst4	ENSMUST00000173932.7:c.2150G>T	ENSMUSP00000133341.2:p.Arg717Met	H-2-Kb	8	10	2	LMFNFYEV	LRFNFYEV	NetMHCpan	25.1	578.3	23.04	159	0.346	74.441	555.658	7.464	820.11	36.23	578.3	25.1	530.5667136	112.6522836	533.0156983	114.482736	M5_p20	0.485714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.342	159	0	0	NA	3qG1	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	2	1	sgMsh2	cell line
chr4	48204258	48204258	C	A	ENSMUST00000030028.4	1	ENSMUSG00000028343	missense	C/F	301	Erp44	ENSMUST00000030028.4:c.902G>T	ENSMUSP00000030028.4:p.Cys301Phe	H-2-Kb	8	4	8	INFLHADF	INFLHADC	NetMHCpan	41.7	258.4	6.197	95	0.211	92.95	217.044	2.335	375.25	65.19	258.4	41.7	137.6385219	137.3219621	175.6871509	120.7090967	M5_p20	0.142857143	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.237	95	0	0	NA	4qB1	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr4	45307923	45307923	CT	C	ENSMUST00000044673.8	1	ENSMUSG00000035601	FS	L/X	203	Trmt10b	ENSMUST00000044673.8:c.612del	ENSMUSP00000041052.2:p.Pro205LeufsTer8	H-2-Kb	8	10	4	SLFLWKPL	SLFPLETL	NetMHCpan	45.9	278.7	6.072	297	0.367	65.889	861.472	13.075	1564.85	78.53	278.7	45.9	803.0452175	78.47656766	919.8986892	53.30156983	M5_p20	1.114285714	1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.366	297	0	0	NA	4qB1	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr4	115068554	115068554	TC	T	ENSMUST00000030489.8	1	ENSMUSG00000028717	FS	I/X	273	Tal1	ENSMUST00000030489.8:c.824del	ENSMUSP00000030489.2:p.Pro275LeufsTer82	H-2-Kb	8	77	0	QAGAFRPL	NA	NetMHC	137.79	NA	NA	18	0.222	228.578	NA	NA	NA	137.79	NA	588.8	NA	207.8452003	NA	249.310173	M5_p20	0.528571429	0.528571429	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.293	18	0	0	NA	4qD1	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr4	120886945	120886945	C	T	ENSMUST00000071093.8	1	ENSMUSG00000032890	missense	P/L	124	Rims3	ENSMUST00000071093.8:c.371C>T	ENSMUSP00000068178.2:p.Pro124Leu	H-2-Kb	8	7	5	TFIFLTRL	TFIFPTRL	NetMHCpan	49.6	106	2.137	71	0.254	194.02	549.467	2.832	531.73	162.75	106	49.6	567.204934	225.2890066	685.0779666	240.8463117	M5_p20	1.785714286	1.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.278	71	0	0	NA	4qD2.2	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr3	146584619	146584619	A	C	ENSMUST00000200633.1	1	ENSMUSG00000028185	missense	L/R	199	Dnase2b	ENSMUST00000200633.1:c.596T>G	ENSMUSP00000142872.1:p.Leu199Arg	H-2-Kb	8	5	7	STFHWKRI	STFHWKLI	SMMPMBEC	144.457	341.775	2.366	133	0.414	192.819	354.532	1.839	367.29	243.23	186.2	161.9	499.7352678	223.738128	341.7747702	144.4574685	M5_p20	-0.842857143	-0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.433	133	0	0	NA	3qH2	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	2	1	sgMsh2	cell line
chr4	108014876	108014876	AT	A	ENSMUST00000146851.7	1	ENSMUSG00000028600	FS	N/X	390	Podn	ENSMUST00000146851.7:c.1169del	ENSMUSP00000121478.1:p.Asn390IlefsTer19	H-2-Kb	8	18	0	SKLIFFLL	NA	SMM	91.567	NA	NA	26	0.385	194.11	NA	NA	NA	277.14	NA	276.6	NA	91.56721386	NA	111.6194813	M5_p20	2.514285714	2.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.3846	26	0	0	NA	4qC7	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr4	20064005	20064005	A	C	ENSMUST00000098242.3	1	ENSMUSG00000073987	missense	K/T	234	Ggh	ENSMUST00000098242.3:c.701A>C	ENSMUSP00000095843.3:p.Lys234Thr	H-2-Kb	8	10	2	FTYPVYAV	FKYPVYAV	SMM	232.135	1272.741	5.483	168	0.339	311.21	3820.621	12.277	5414.14	319.82	5562.8	302.6	1272.740898	232.1346655	2227.101447	387.9180607	M5_p20	0.757142857	0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.358	168	0	0	NA	4qA3	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr4	96479086	96479086	T	A	ENSMUST00000124729.3	5	ENSMUSG00000082932	missense	D/V	265	Cyp2j8	ENSMUST00000124729.3:c.794A>T	ENSMUSP00000134591.1:p.Asp265Val	H-2-Kb	8	4	8	LFFSHVMV	LFFSHVMD	SMM	259.263	1732.766	6.683	133	0.286	393.873	6808.358	17.286	11883.95	500.84	12681.9	699	1732.766328	259.2626764	1632.074578	286.906244	M5_p20	1.7	1.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.305	133	0	0	NA	4qC5	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr4	53083890	53083890	A	G	ENSMUST00000030010.3	1	ENSMUSG00000015243	missense	W/R	648	Abca1	ENSMUST00000030010.3:c.1942T>C	ENSMUSP00000030010.3:p.Trp648Arg	H-2-Kb	8	11	1	RIYSVAVI	WIYSVAVI	SMM	334.765	451.586	1.349	87	0.322	400.859	795.858	1.985	1140.13	619.27	1407.1	446.3	451.5855118	334.7649647	409.0157201	355.4184757	M5_p20	2.442857143	2.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.309	87	0	0	NA	4qB2	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr4	108014876	108014876	AT	A	ENSMUST00000146851.7	1	ENSMUSG00000028600	FS	N/X	390	Podn	ENSMUST00000146851.7:c.1169del	ENSMUSP00000121478.1:p.Asn390IlefsTer19	H-2-Kb	8	17	0	ISKLIFFL	NA	NetMHCpan	368.7	NA	NA	26	0.385	452.395	NA	NA	NA	1932.36	NA	368.7	NA	525.7024488	NA	379.0879676	M5_p20	1.857142857	1.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.3846	26	0	0	NA	4qC7	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr4	124942369	124942369	T	C	ENSMUST00000094769.12	1	ENSMUSG00000044730	missense	Y/H	158	9930104L06Rik	ENSMUST00000094769.12:c.472T>C	ENSMUSP00000154851.1:p.Tyr158His	H-2-Kb	9	4	8	SSYLKRKHL	SSYLKRKYL	NetMHC	33.01	28.82	0.873	107	0.346	69.015	66.097	0.958	28.82	33.01	64.1	72.7	68.09418088	65.32960014	84.382036	77.13473645	M5_p20	-1.314285714	-1.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.353	107	0	0	NA	4qD2.2	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr4	120886945	120886945	C	T	ENSMUST00000071093.8	1	ENSMUSG00000032890	missense	P/L	124	Rims3	ENSMUST00000071093.8:c.371C>T	ENSMUSP00000068178.2:p.Pro124Leu	H-2-Kb	9	6	6	GTFIFLTRL	GTFIFPTRL	NetMHCpan	28.1	39.6	1.409	71	0.254	60.436	144.364	2.389	86.31	36.1	39.6	28.1	215.332707	91.43448014	202.4184057	84.77152578	M5_p20	1.785714286	1.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.278	71	0	0	NA	4qD2.2	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr3	123479673	123479673	A	G	ENSMUST00000029603.9	1	ENSMUSG00000027978	missense	N/S	306	Prss12	ENSMUST00000029603.9:c.917A>G	ENSMUSP00000029603.8:p.Asn306Ser	H-2-Kb	9	11	1	STYVACRLL	NTYVACRLL	NetMHC	39.19	569.67	14.536	263	0.24	135.345	730.573	5.398	569.67	39.19	439.1	64.1	891.4767066	206.5903351	1337.365144	333.6184037	M5_p20	1.471428571	1.471428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	263	0	0	NA	3qG1	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr3	125713338	125713338	G	T	ENSMUST00000173932.7	5	ENSMUSG00000027971	missense	R/M	717	Ndst4	ENSMUST00000173932.7:c.2150G>T	ENSMUSP00000133341.2:p.Arg717Met	H-2-Kb	9	10	2	LMFNFYEVI	LRFNFYEVI	NetMHCpan	20.1	409.7	20.383	159	0.346	48.786	390.665	8.008	545.32	58.25	409.7	20.1	371.6293451	53.59323836	283.3022345	43.97947088	M5_p20	0.857142857	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.342	159	0	0	NA	3qG1	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	2	1	sgMsh2	cell line
chr3	157312902	157312902	C	T	ENSMUST00000074015.10	1	ENSMUSG00000040037	missense	L/F	347	Negr1	ENSMUST00000074015.10:c.1039C>T	ENSMUSP00000073664.4:p.Leu347Phe	H-2-Kb	9	12	9	IFYLKNAIF	IFYLKNAIL	SMM	146.592	86.918	0.593	165	0.182	161.23	88.179	0.547	89.44	172.75	131.7	353.4	86.91805512	146.5919088	86.54659777	149.7097207	M5_p20	0.6	0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.178	165	0	0	NA	3qH4	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.765214714	sgMsh2	cell line
chr4	45307923	45307923	CT	C	ENSMUST00000044673.8	1	ENSMUSG00000035601	FS	L/X	203	Trmt10b	ENSMUST00000044673.8:c.612del	ENSMUSP00000041052.2:p.Pro205LeufsTer8	H-2-Kb	9	9	5	FSLFLWKPL	FSLFPLETL	NetMHCpan	127.2	1483.2	11.66	297	0.367	215.539	984.497	4.568	761.94	209.13	1483.2	127.2	889.4263671	253.577082	1079.567993	221.9473684	M5_p20	1.114285714	1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.366	297	0	0	NA	4qB1	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr3	155137385	155137385	AT	A	ENSMUST00000194376.1	1	ENSMUSG00000028182	FS	N/X	298	Lrriq3	ENSMUST00000194376.1:c.897del	ENSMUSP00000142127.1:p.His300ThrfsTer32	H-2-Kb	9	21	0	LTFHQYKGI	NA	NetMHCpan	249.3	NA	NA	229	0.166	334.616	NA	NA	NA	317.47	NA	249.3	NA	377.6678362	NA	351.7628732	M5_p20	-0.714285714	-0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.17	229	0	0	NA	3qH4	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.730823041	sgMsh2	cell line
chr3	129633453	129633453	A	G	ENSMUST00000071402.6	1	ENSMUSG00000041220	missense	Y/C	256	Elovl6	ENSMUST00000071402.6:c.767A>G	ENSMUSP00000071351.2:p.Tyr256Cys	H-2-Kb	9	4	8	CHFFFEACI	CHFFFEAYI	NetMHCpan	341.5	130.1	0.381	129	0.264	390.203	172.808	0.443	145.58	477.24	130.1	341.5	200.0368468	362.3347605	282.000579	418.0709584	M5_p20	1.957142857	1.957142857	TRUE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.26	129	0	0	NA	3qG3	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr4	108014876	108014876	AT	A	ENSMUST00000146851.7	1	ENSMUSG00000028600	FS	N/X	390	Podn	ENSMUST00000146851.7:c.1169del	ENSMUSP00000121478.1:p.Asn390IlefsTer19	H-2-Kb	9	17	0	ISKLIFFLL	NA	NetMHCpan	189.5	NA	NA	26	0.385	243.552	NA	NA	NA	514.43	NA	189.5	NA	254.1616376	NA	232.9431801	M5_p20	2.514285714	2.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.3846	26	0	0	NA	4qC7	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr3	155137385	155137385	AT	A	ENSMUST00000194376.1	1	ENSMUSG00000028182	FS	N/X	298	Lrriq3	ENSMUST00000194376.1:c.897del	ENSMUSP00000142127.1:p.His300ThrfsTer32	H-2-Kb	9	10	4	VNFTEVGWM	NA	SMMPMBEC	346.937	NA	NA	229	0.166	357.03	NA	NA	NA	962.72	NA	361.6	NA	352.4601324	NA	346.9365057	M5_p20	0.485714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.17	229	0	0	NA	3qH4	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.730823041	sgMsh2	cell line
chr4	136554214	136554214	T	A	ENSMUST00000105847.7	5	ENSMUSG00000036940	missense	K/M	682	Kdm1a	ENSMUST00000105847.7:c.2045A>T	ENSMUSP00000101473.1:p.Lys682Met	H-2-Db	9	6	6	FGNLNMVVL	FGNLNKVVL	NetMHC	15.68	50.61	3.228	156	0.391	76.126	173.018	2.273	50.61	15.68	144.4	54.4	281.5917975	138.8736979	201.6368945	97.8520661	M5_p20	1.557142857	1.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.366	156	0	0	NA	4qD3	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr5	34848948	34848948	T	A	ENSMUST00000080036.2	1	ENSMUSG00000029104	missense	H/Q	1400	Htt	ENSMUST00000080036.2:c.4200T>A	ENSMUSP00000078945.2:p.His1400Gln	H-2-Db	9	8	4	NAIQNHIRL	NAIHNHIRL	NetMHCpan	42.5	130.5	3.071	207	0.266	128.892	250.646	1.945	219.7	50.95	130.5	42.5	281.5917975	206.8330804	333.8643134	252.6794949	M5_p20	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.264	207	0	0	NA	5qB2	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr4	155268251	155268251	T	G	ENSMUST00000030922.14	1	ENSMUSG00000029053	missense	K/T	473	Prkcz	ENSMUST00000030922.14:c.1418A>C	ENSMUSP00000030922.7:p.Lys473Thr	H-2-Db	9	5	7	FQVILETPI	FQVILEKPI	NetMHC	96.91	1744.74	18.004	130	0.262	220.135	1380.05	6.269	1744.74	96.91	2345.3	278.3	1015.359882	224.7087583	992.1332393	215.5609059	M5_p20	1.6	1.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.253	130	0	0	NA	4qE2	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr5	63806698	63806698	A	T	ENSMUST00000159584.2	1	ENSMUSG00000090061	missense	K/N	1208	Nwd2	ENSMUST00000159584.2:c.3624A>T	ENSMUSP00000124712.1:p.Lys1208Asn	H-2-Db	9	7	5	ILICNALSI	ILICKALSI	NetMHCpan	141.1	7481.9	53.026	272	0.287	238.859	9795.44	41.009	18580.86	208.18	7481.9	141.1	8762.337965	269.537999	10828.54237	322.5299134	M5_p20	1.828571429	2.485714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.296	272	0	0	NA	5qC3.1	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr4	149106266	149106266	A	G	ENSMUST00000030816.3	1	ENSMUSG00000028974	missense	K/R	84	Dffa	ENSMUST00000030816.3:c.251A>G	ENSMUSP00000030816.3:p.Lys84Arg	H-2-Kb	8	8	4	SNTRFVAL	SNTKFVAL	NetMHC	13.69	27.26	1.991	181	0.343	28.582	49.82	1.743	27.26	13.69	38.3	23.3	61.33946729	33.86413603	84.08915726	46.10414792	M5_p20	0.557142857	0.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe	3	0.323	181	0	0	NA	4qE2	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr5	57721359	57721359	T	C	ENSMUST00000191837.5	1	ENSMUSG00000029108	missense	L/S	752	Pcdh7	ENSMUST00000191837.5:c.2255T>C	ENSMUSP00000142319.1:p.Leu752Ser	H-2-Kb	8	5	7	RNISYTSL	RNISYTLL	NetMHC	17.31	17.09	0.987	249	0.245	37.571	44.968	1.197	17.09	17.31	18.2	19.2	71.73646964	55.94225905	78.83879904	59.94321055	M5_p20	0.171428571	0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.254	249	0	0	NA	5qC1	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr5	20886561	20886561	A	G	ENSMUST00000115259.2	1	ENSMUSG00000045435	missense	Y/C	108	Tmem60	ENSMUST00000115259.2:c.323A>G	ENSMUSP00000110914.2:p.Tyr108Cys	H-2-Kb	8	9	3	LSCVFIPL	LSYVFIPL	SMMPMBEC	18.739	1.883	0.1	271	0.24	26.189	2.268	0.087	2.35	26.63	3.4	62.9	2.186452264	25.74779247	1.882521739	18.73872337	M5_p20	2.2	2.2	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.269	271	0	0	NA	5qA3	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr5	8397252	8397252	GA	G	ENSMUST00000171808.7	1	ENSMUSG00000002297	FS	S/X	653	Dbf4	ENSMUST00000171808.7:c.1957del	ENSMUSP00000132906.1:p.Ser653LeufsTer20	H-2-Kb	8	6	6	LSTFFLPL	LSTFFSSP	NetMHCpan	19	5938	312.526	69	0.217	50.419	3863.767	76.632	12957.18	47.66	5938	19	1639.607892	53.17897962	1789.534189	54.54312289	M5_p20	1.442857143	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.242	69	0	0	NA	5qA1	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr4	155966486	155966486	T	C	ENSMUST00000024338.4	1	ENSMUSG00000023571	missense	M/T	304	C1qtnf12	ENSMUST00000024338.4:c.911T>C	ENSMUSP00000024338.4:p.Met304Thr	H-2-Kb	8	12	6	SSFSGTLL	SSFSGMLL	NetMHCpan	66.9	50.3	0.752	223	0.372	86.988	70.723	0.813	34.09	71	50.3	66.9	95.22259222	121.8260042	91.14650073	102.9769442	M5_p20	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.372	223	0	0	NA	4qE2	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr4	139640665	139640665	A	G	ENSMUST00000039818.9	1	ENSMUSG00000028737	missense	T/A	306	Aldh4a1	ENSMUST00000039818.9:c.916A>G	ENSMUSP00000043821.9:p.Thr306Ala	H-2-Kb	8	8	4	RFRAFPRL	RFRTFPRL	SMM	54.293	53.179	0.979	95	0.432	87.052	74.246	0.853	78.71	97.59	160.4	151.2	53.17897962	54.29252	69.78145169	76.51384027	M5_p20	0.085714286	0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.414	95	0	0	NA	4qD3	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr5	86538011	86538011	T	C	ENSMUST00000116553.8	1	ENSMUSG00000048764	missense	M/V	166	Tmprss11f	ENSMUST00000116553.8:c.496A>G	ENSMUSP00000112252.2:p.Met166Val	H-2-Kb	8	9	3	ISVPSFSL	ISMPSFSL	NetMHCpan	102.9	36.1	0.351	200	0.165	207.483	135.317	0.652	55.98	137.8	36.1	102.9	214.6545013	277.1660292	219.1492557	335.5366776	M5_p20	0.971428571	1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.165	200	0	0	NA	5qE1	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	0.709328246	sgMsh2	cell line
chr5	16359028	16359028	T	C	ENSMUST00000039370.13	1	ENSMUSG00000040118	missense	V/A	903	Cacna2d1	ENSMUST00000039370.13:c.2708T>C	ENSMUSP00000049457.7:p.Val903Ala	H-2-Kb	8	4	8	KSYDYQSA	KSYDYQSV	NetMHCpan	154.7	15.4	0.1	145	0.152	204.33	27.778	0.136	12.68	168.92	15.4	154.7	40.15503419	239.7397234	51.49202839	247.5939338	M5_p20	-1.342857143	-1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.156	145	0	0	NA	5qA3	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	0.670637614	sgMsh2	cell line
chr4	141860564	141860564	T	C	ENSMUST00000036854.3	1	ENSMUSG00000040659	missense	N/S	192	Efhd2	ENSMUST00000036854.3:c.575A>G	ENSMUSP00000044502.3:p.Asn192Ser	H-2-Kb	8	10	2	KSFFEAKV	KNFFEAKV	NetMHCpan	179.1	204.1	1.14	53	0.358	248.675	448.272	1.803	437.62	277.19	204.1	179.1	583.0959165	315.3116375	458.9231861	220.1608027	M5_p20	0.485714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.353	53	0	0	NA	4qE1	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr4	155069021	155069021	T	G	ENSMUST00000103180.3	1	ENSMUSG00000029047	missense	I/M	182	Pex10	ENSMUST00000103180.3:c.546T>G	ENSMUSP00000099469.3:p.Ile182Met	H-2-Kb	8	11	1	MHGTFYHL	IHGTFYHL	SMMPMBEC	155.503	71.571	0.46	82	0.293	235.779	80.872	0.343	80.51	309.1	169.9	352	81.23440428	162.4575876	71.57148034	155.5034397	M5_p20	-0.314285714	-0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.327	82	0	0	NA	4qE2	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr5	34848948	34848948	T	A	ENSMUST00000080036.2	1	ENSMUSG00000029104	missense	H/Q	1400	Htt	ENSMUST00000080036.2:c.4200T>A	ENSMUSP00000078945.2:p.His1400Gln	H-2-Kb	8	9	3	AIQNHIRL	AIHNHIRL	SMM	233.206	203.582	0.873	207	0.266	335.761	210.611	0.627	187.86	352.56	450.7	1017.2	203.5822922	233.2061504	217.6406428	318.9627742	M5_p20	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.264	207	0	0	NA	5qB2	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr5	3673162	3673162	T	C	ENSMUST00000014673.8	1	ENSMUSG00000014529	missense	I/T	231	Tmbim7	ENSMUST00000014673.8:c.692T>C	ENSMUSP00000014673.2:p.Ile231Thr	H-2-Kb	8	7	5	LIYGTIAL	LIYGIIAL	SMMPMBEC	338.641	366.218	1.081	319	0.27	379.899	400.735	1.055	501.32	404.38	344.3	444	435.2512229	355.4184757	366.2182643	338.6413603	M5_p20	1.742857143	1.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.271	319	0	0	NA	5qA1	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr5	3673162	3673162	T	C	ENSMUST00000014673.8	1	ENSMUSG00000014529	missense	I/T	231	Tmbim7	ENSMUST00000014673.8:c.692T>C	ENSMUSP00000014673.2:p.Ile231Thr	H-2-Kb	8	5	7	VLLIYGTI	VLLIYGII	NetMHCpan	142	579.7	4.082	319	0.27	310.354	756.542	2.438	1677.7	445.42	579.7	142	772.2181412	337.0854446	740.8665723	283.6220554	M5_p20	2.028571429	2.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.271	319	0	0	NA	5qA1	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr5	29478259	29478259	T	A	ENSMUST00000165512.3	1	ENSMUSG00000001566	missense	N/I	6	Mnx1	ENSMUST00000165512.3:c.17A>T	ENSMUSP00000129503.2:p.Asn6Ile	H-2-Kb	8	5	2	KIFRIDAL	KNFRIDAL	NetMHCpan	239.7	176.2	0.735	77	0.325	312.442	360.883	1.155	460.29	468.11	176.2	239.7	352.1599796	316.0385059	369.6068402	308.8445912	M5_p20	1.342857143	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.329	77	0	0	NA	5qB1	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	2	1	sgMsh2	cell line
chr5	8397252	8397252	GA	G	ENSMUST00000171808.7	1	ENSMUSG00000002297	FS	S/X	653	Dbf4	ENSMUST00000171808.7:c.1957del	ENSMUSP00000132906.1:p.Ser653LeufsTer20	H-2-Kb	8	8	4	TFFLPLQL	NA	SMM	230.537	NA	NA	69	0.217	298.985	NA	NA	NA	479.66	NA	335.1	NA	230.5366617	NA	262.8693795	M5_p20	1.7	1.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.242	69	0	0	NA	5qA1	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr4	155069021	155069021	T	G	ENSMUST00000103180.3	1	ENSMUSG00000029047	missense	I/M	182	Pex10	ENSMUST00000103180.3:c.546T>G	ENSMUSP00000099469.3:p.Ile182Met	H-2-Kb	8	6	6	VAWFYMHG	VAWFYIHG	SMM	88.052	124.377	1.413	82	0.293	255.688	481.612	1.884	1556.42	599.87	818.1	399.5	124.3769779	88.05215715	145.1242539	111.8767908	M5_p20	0.1	0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.327	82	0	0	NA	4qE2	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr4	150897465	150897465	T	C	ENSMUST00000105674.7	5	ENSMUSG00000028964	missense	Y/C	139	Park7	ENSMUST00000105674.7:c.416A>G	ENSMUSP00000101299.1:p.Tyr139Cys	H-2-Kb	8	11	1	CSYSESRV	YSYSESRV	SMMPMBEC	265.302	171.688	0.647	40	0.225	428.947	279.259	0.651	332.19	655.1	385.1	583.9	226.3288934	273.9933359	171.6880231	265.3016799	M5_p20	-1.071428571	-1.071428571	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.266	40	0	0	NA	4qE2	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr5	87694728	87694728	C	T	ENSMUST00000197422.4	1	ENSMUSG00000063157	missense	A/T	147	Csn2	ENSMUST00000197422.4:c.439G>A	ENSMUSP00000143341.1:p.Ala147Thr	H-2-Kb	8	9	3	SLTSLANL	SLASLANL	SMM	381.716	341.775	0.895	120	0.417	487.6	375.638	0.77	720.32	664.91	348.8	569	341.7747702	381.7156799	402.476011	406.2000757	M5_p20	1.171428571	1.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.416	120	0	0	NA	5qE1	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	2	1	sgMsh2	cell line
chr4	143895385	143895385	T	C	ENSMUST00000105767.1	5	ENSMUSG00000078512	missense	I/V	467	Pramef6	ENSMUST00000105767.1:c.1399A>G	ENSMUSP00000101393.1:p.Ile467Val	H-2-Kb	9	13	2	CVYSFVGNI	CIYSFVGNI	NetMHC	23.45	22.06	0.941	255	0.278	90.759	96.799	1.067	22.06	23.45	42.9	35.6	150.6988715	145.9183802	252.4933823	247.8848587	M5_p20	0.785714286	1.6	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.272	255	0	0	NA	4qE1	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr5	92454754	92454754	G	A	ENSMUST00000031377.8	1	ENSMUSG00000029426	missense	L/F	268	Scarb2	ENSMUST00000031377.8:c.802C>T	ENSMUSP00000031377.7:p.Leu268Phe	H-2-Kb	9	8	4	VLYFFPSDL	VLYLFPSDL	NetMHCpan	19.1	22	1.152	168	0.262	86.179	72.626	0.843	28.81	53.44	22	19.1	116.4420922	125.0575741	125.0978944	118.9186581	M5_p20	0.314285714	1.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.28	168	0	0	NA	5qE2	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr5	101944143	101944143	T	A	ENSMUST00000053177.13	1	ENSMUSG00000043940	missense	K/N	443	Wdfy3	ENSMUST00000053177.13:c.1329A>T	ENSMUSP00000052607.7:p.Lys443Asn	H-2-Kb	9	8	4	VQNNYFEML	VQNKYFEML	NetMHC	62.66	107.77	1.72	89	0.236	165.336	170.625	1.032	107.77	62.66	106.6	107.7	272.3391013	275.4926395	233.4801695	222.9718309	M5_p20	-0.471428571	-0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.233	89	0	0	NA	5qE5	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr5	52848016	52848016	A	G	ENSMUST00000031072.13	1	ENSMUSG00000029176	missense	Q/R	301	Anapc4	ENSMUST00000031072.13:c.902A>G	ENSMUSP00000031072.7:p.Gln301Arg	H-2-Kb	9	9	3	SVRDEFMHL	SVQDEFMHL	NetMHCpan	107.4	185.5	1.727	62	0.129	228.321	411.963	1.804	155.92	116.93	185.5	107.4	638.4251688	339.7113053	843.82036	474.5150595	M5_p20	-0.885714286	-0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.179	62	0	0	NA	5qC1	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	0.769513673	sgMsh2	cell line
chr5	8397252	8397252	GA	G	ENSMUST00000171808.7	1	ENSMUSG00000002297	FS	S/X	653	Dbf4	ENSMUST00000171808.7:c.1957del	ENSMUSP00000132906.1:p.Ser653LeufsTer20	H-2-Kb	9	8	4	TFFLPLQLL	NA	NetMHC	150.3	NA	NA	69	0.217	272.968	NA	NA	NA	150.3	NA	424.1	NA	213.850367	NA	332.0855664	M5_p20	1.842857143	1.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.242	69	0	0	NA	5qA1	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr4	155069021	155069021	T	G	ENSMUST00000103180.3	1	ENSMUSG00000029047	missense	I/M	182	Pex10	ENSMUST00000103180.3:c.546T>G	ENSMUSP00000099469.3:p.Ile182Met	H-2-Kb	9	10	2	YMHGTFYHL	YIHGTFYHL	NetMHC	159.62	219.23	1.373	82	0.293	188.296	355.71	1.889	219.23	159.62	277.8	182.9	433.6206938	193.6912491	687.4640623	332.0855664	M5_p20	-0.314285714	-0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.327	82	0	0	NA	4qE2	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr4	155069021	155069021	T	G	ENSMUST00000103180.3	1	ENSMUSG00000029047	missense	I/M	182	Pex10	ENSMUST00000103180.3:c.546T>G	ENSMUSP00000099469.3:p.Ile182Met	H-2-Kb	9	7	5	AWFYMHGTF	AWFYIHGTF	SMM	130.05	341.279	2.624	82	0.293	193.94	435.221	2.244	455.25	209.54	926.2	545.8	341.2793414	130.0498932	415.1929781	178.3405083	M5_p20	0.271428571	0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.327	82	0	0	NA	4qE2	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr5	101944090	101944090	T	C	ENSMUST00000053177.13	1	ENSMUSG00000043940	missense	K/R	461	Wdfy3	ENSMUST00000053177.13:c.1382A>G	ENSMUSP00000052607.7:p.Lys461Arg	H-2-Kb	9	5	7	LNYIPCREL	LNYIPCKEL	NetMHCpan	162.8	323.2	1.985	107	0.318	262.115	363.046	1.385	484.84	218.66	323.2	162.8	341.2793414	305.5694975	384.8132346	375.1889162	M5_p20	-0.014285714	-0.014285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.325	107	0	0	NA	5qE5	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr4	143895385	143895385	T	C	ENSMUST00000105767.1	5	ENSMUSG00000078512	missense	I/V	467	Pramef6	ENSMUST00000105767.1:c.1399A>G	ENSMUSP00000101393.1:p.Ile467Val	H-2-Kb	9	10	5	RNFCVYSFV	RNFCIYSFV	NetMHCpan	85.7	73	0.852	255	0.278	357.494	308.946	0.864	234.97	248.06	73	85.7	382.9217191	472.1826226	388.3738676	466.9280884	M5_p20	2.057142857	2.057142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.272	255	0	0	NA	4qE1	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr5	3673162	3673162	T	C	ENSMUST00000014673.8	1	ENSMUSG00000014529	missense	I/T	231	Tmbim7	ENSMUST00000014673.8:c.692T>C	ENSMUSP00000014673.2:p.Ile231Thr	H-2-Kb	9	7	5	LIYGTIALV	LIYGIIALV	NetMHC	255.57	661.63	2.589	319	0.27	399.072	568.543	1.425	661.63	255.57	1069.9	902.4	475.4556362	346.02701	472.3348608	452.1161284	M5_p20	1.7	1.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.271	319	0	0	NA	5qA1	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr5	29478259	29478259	T	A	ENSMUST00000165512.3	1	ENSMUSG00000001566	missense	N/I	6	Mnx1	ENSMUST00000165512.3:c.17A>T	ENSMUSP00000129503.2:p.Asn6Ile	H-2-Kb	9	5	2	KIFRIDALL	KNFRIDALL	NetMHC	294.87	154.93	0.525	77	0.325	482.133	349.528	0.725	154.93	294.87	223.6	334.6	475.4556362	629.6656471	486.6872848	649.007925	M5_p20	1.242857143	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.329	77	0	0	NA	5qB1	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	2	1	sgMsh2	cell line
chr5	16359028	16359028	T	C	ENSMUST00000039370.13	1	ENSMUSG00000040118	missense	V/A	903	Cacna2d1	ENSMUST00000039370.13:c.2708T>C	ENSMUSP00000049457.7:p.Val903Ala	H-2-Kb	9	4	8	KSYDYQSAC	KSYDYQSVC	NetMHCpan	276.2	497	1.799	145	0.152	416.065	787.162	1.892	922.32	305.81	497	276.2	924.9324152	656.3114787	652.0036095	526.3201534	M5_p20	-0.871428571	-0.871428571	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.156	145	0	0	NA	5qA3	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	0.670637614	sgMsh2	cell line
chr4	139640665	139640665	A	G	ENSMUST00000039818.9	1	ENSMUSG00000028737	missense	T/A	306	Aldh4a1	ENSMUST00000039818.9:c.916A>G	ENSMUSP00000043821.9:p.Thr306Ala	H-2-Kb	9	4	8	QNLDRFRAF	QNLDRFRTF	SMM	226.001	239.944	1.062	95	0.432	312.457	354.948	1.136	385.37	323.44	1098.6	1301.5	239.9440583	226.0008122	324.526376	301.4740949	M5_p20	-0.185714286	-0.185714286	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.414	95	0	0	NA	4qD3	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr5	8397252	8397252	GA	G	ENSMUST00000171808.7	1	ENSMUSG00000002297	FS	S/X	653	Dbf4	ENSMUST00000171808.7:c.1957del	ENSMUSP00000132906.1:p.Ser653LeufsTer20	H-2-Kb	9	7	5	STFFLPLQL	NA	NetMHCpan	82.6	NA	NA	69	0.217	310.245	NA	NA	NA	335.88	NA	82.6	NA	345.2311699	NA	284.6098982	M5_p20	1.7	1.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.242	69	0	0	NA	5qA1	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr5	3673162	3673162	T	C	ENSMUST00000014673.8	1	ENSMUSG00000014529	missense	I/T	231	Tmbim7	ENSMUST00000014673.8:c.692T>C	ENSMUSP00000014673.2:p.Ile231Thr	H-2-Kb	9	4	8	SVLLIYGTI	SVLLIYGII	NetMHCpan	276.2	1014.9	3.675	319	0.27	446.055	804.767	1.804	1087.34	388.32	1014.9	276.2	565.0800826	505.9527957	594.6343592	503.7905305	M5_p20	2.028571429	2.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.271	319	0	0	NA	5qA1	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr4	155069021	155069021	T	G	ENSMUST00000103180.3	1	ENSMUSG00000029047	missense	I/M	182	Pex10	ENSMUST00000103180.3:c.546T>G	ENSMUSP00000099469.3:p.Ile182Met	H-2-Kb	9	6	6	VAWFYMHGT	VAWFYIHGT	SMMPMBEC	296.654	386.589	1.303	82	0.293	366.731	465.832	1.27	684.88	393.67	468.1	352.3	463.5643185	381.1623536	386.5894518	296.6538575	M5_p20	-0.257142857	0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.327	82	0	0	NA	4qE2	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr5	57721359	57721359	T	C	ENSMUST00000191837.5	1	ENSMUSG00000029108	missense	L/S	752	Pcdh7	ENSMUST00000191837.5:c.2255T>C	ENSMUSP00000142319.1:p.Leu752Ser	H-2-Kb	9	7	5	ISYTSLPPS	ISYTLLPPS	SMM	151.743	109.172	0.719	249	0.245	424.609	273.635	0.644	451.89	632.75	392.3	624.7	109.1716816	151.7434661	154.9708446	224.5173978	M5_p20	-0.428571429	0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.254	249	0	0	NA	5qC1	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr5	31040436	31040436	T	C	ENSMUST00000114668.6	1	ENSMUSG00000006641	missense	I/V	310	Slc5a6	ENSMUST00000114668.6:c.928A>G	ENSMUSP00000110316.1:p.Ile310Val	H-2-Kb	9	11	1	VGLVMFAYY	IGLVMFAYY	SMM	176.242	259.484	1.472	119	0.269	453.049	578.617	1.277	846.6	671.54	1237.9	1273.8	259.483651	176.2422384	310.6347231	234.557865	M5_p20	1.7	2.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.251	119	0	0	NA	5qB1	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr6	42286884	42286884	TG	T	ENSMUST00000031894.12	1	ENSMUSG00000029862	FS	G/X	40	Clcn1	ENSMUST00000031894.12:c.122del	ENSMUSP00000031894.6:p.Gly41AlafsTer70	H-2-Db	9	65	0	TTILNVKTV	NA	NetMHCpan	370.5	NA	NA	112	0.098	457.664	NA	NA	NA	742.55	NA	370.5	NA	495.0168702	NA	420.3102682	M5_p20	1.228571429	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0982	112	0	0	NA	6qB2.1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.42215778	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	8	4	8	VLVSYTRL	VLVSYTRI	NetMHC	19.39	171.38	8.839	173	0.266	31.763	209.772	6.604	171.38	19.39	99.5	20.3	348.1288376	53.67103866	248.1646968	43.22549746	M5_p20	0.642857143	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.282	173	0	0	NA	6qB2.1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	2	1	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	8	6	6	VSYTRLLV	VSYTRILV	NetMHCpan	35.2	39.9	1.134	173	0.266	94.957	84.621	0.891	32.04	39.69	39.9	35.2	129.3421274	150.2242346	135.1263357	158.7596015	M5_p20	0.642857143	0.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.282	173	0	0	NA	6qB2.1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	2	1	sgMsh2	cell line
chr5	110277756	110277756	A	G	ENSMUST00000031472.11	1	ENSMUSG00000029499	missense	F/L	138	Pxmp2	ENSMUST00000031472.11:c.412T>C	ENSMUSP00000031472.5:p.Phe138Leu	H-2-Kb	8	8	4	VSVLVAKM	VSVFVAKM	NetMHC	116.68	141.33	1.211	172	0.244	223.541	229.414	1.026	141.33	116.68	47.9	183	323.3999884	288.2305431	317.4972734	264.0827294	M5_p20	1.6	1.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.229	172	0	0	NA	5qF	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	0.984461626	sgMsh2	cell line
chr6	46988685	46988685	T	C	ENSMUST00000114641.7	1	ENSMUSG00000039419	missense	L/P	810	Cntnap2	ENSMUST00000114641.7:c.2429T>C	ENSMUSP00000110288.1:p.Leu810Pro	H-2-Kb	8	8	4	SSYPHFST	SSYLHFST	NetMHCpan	86.9	51.5	0.593	258	0.062	228.224	89.241	0.391	48.52	164.88	51.5	86.9	155.8619122	296.9887511	126.9813676	291.5680954	M5_p20	-0.8	-0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.07	258	0	0	NA	6qB2.3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.300927135	sgMsh2	cell line
chr6	35270381	35270381	A	G	ENSMUST00000031868.4	1	ENSMUSG00000029843	missense	I/T	568	Slc13a4	ENSMUST00000031868.4:c.1703T>C	ENSMUSP00000031868.4:p.Ile568Thr	H-2-Kb	8	11	1	TVFSYGHC	IVFSYGHC	SMMPMBEC	126.398	45.787	0.362	197	0.198	145.752	48.403	0.332	38.66	171.24	51.8	148.7	51.01994663	142.8038776	45.7867692	126.3979412	M5_p20	0.542857143	0.542857143	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.209	197	0	0	NA	6qB1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.898482445	sgMsh2	cell line
chr6	30815960	30815960	A	G	ENSMUST00000048774.12	1	ENSMUSG00000025607	missense	V/A	480	Copg2	ENSMUST00000048774.12:c.1439T>C	ENSMUSP00000038368.6:p.Val480Ala	H-2-Kb	8	6	6	FIFNRAVL	FIFNRVVL	SMM	138.912	401.55	2.891	162	0.16	159.887	404.813	2.532	524.31	178.28	359.2	181.6	401.5503419	138.9120754	408.0750101	141.4946437	M5_p20	1.3	1.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.155	162	0	0	NA	6qA3.3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.666338655	sgMsh2	cell line
chr6	42286884	42286884	TG	T	ENSMUST00000031894.12	1	ENSMUSG00000029862	FS	G/X	40	Clcn1	ENSMUST00000031894.12:c.122del	ENSMUSP00000031894.6:p.Gly41AlafsTer70	H-2-Kb	8	28	0	TQHRYMAI	NA	NetMHC	259.42	NA	NA	112	0.098	338.138	NA	NA	NA	259.42	NA	273.8	NA	443.3431473	NA	402.476011	M5_p20	-0.614285714	-0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0982	112	0	0	NA	6qB2.1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.42215778	sgMsh2	cell line
chr6	18405230	18405230	T	C	ENSMUST00000090601.11	1	ENSMUSG00000000416	missense	Y/C	1090	Cttnbp2	ENSMUST00000090601.11:c.3269A>G	ENSMUSP00000088089.5:p.Tyr1090Cys	H-2-Kb	8	7	5	SSVTCASM	SSVTYASM	NetMHC	276.55	6.31	0.023	444	0.185	362.299	24.523	0.068	6.31	276.55	15.8	475.5	35.70590129	399.7053856	33.24604589	324.8927349	M5_p20	1.157142857	1.157142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.191	444	0	0	NA	6qA2	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.821101182	sgMsh2	cell line
chr5	143373198	143373198	CA	C	ENSMUST00000110733.8	1	ENSMUSG00000010825	FS	A/X	252	Grid2ip	ENSMUST00000110733.8:c.757del	ENSMUSP00000106361.2:p.Thr253ProfsTer66	H-2-Kb	8	51	0	LSCLAARL	NA	SMMPMBEC	117.69	NA	NA	17	0.235	231.458	NA	NA	NA	310.25	NA	703.1	NA	152.6651821	NA	117.6901185	M5_p20	1.2	1.2	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.272	17	0	0	NA	5qG2	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr5	123758488	123758488	A	G	ENSMUST00000031366.11	1	ENSMUSG00000029414	missense	N/D	138	Kntc1	ENSMUST00000031366.11:c.412A>G	ENSMUSP00000031366.7:p.Asn138Asp	H-2-Kb	8	5	7	SQRTYRDL	SQRTYRNL	SMM	239.74	37.217	0.155	193	0.399	352.064	42.914	0.122	25.66	412.56	218.3	1756.2	37.21688324	239.7397234	48.61160944	291.5680954	M5_p20	-2.028571429	-2.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.409	193	0	0	NA	5qF	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	2	1	sgMsh2	cell line
chr5	143373198	143373198	CA	C	ENSMUST00000110733.8	1	ENSMUSG00000010825	FS	A/X	252	Grid2ip	ENSMUST00000110733.8:c.757del	ENSMUSP00000106361.2:p.Thr253ProfsTer66	H-2-Kb	8	17	0	VALALGVL	NA	SMM	226.851	NA	NA	17	0.235	270.856	NA	NA	NA	422.56	NA	272.1	NA	226.8506354	NA	269.6124854	M5_p20	2.685714286	2.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.272	17	0	0	NA	5qG2	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr6	38395159	38395159	A	G	ENSMUST00000162554.7	1	ENSMUSG00000056832	missense	N/S	228	Ttc26	ENSMUST00000162554.7:c.683A>G	ENSMUSP00000124369.1:p.Asn228Ser	H-2-Kb	8	8	4	KACSHFRL	KACNHFRL	SMMPMBEC	238.089	262.869	1.104	250	0.172	424.535	436.945	1.029	611.02	603.18	792.8	636.8	253.9451951	245.8895091	262.8693795	238.0893668	M5_p20	0.342857143	0.342857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.181	250	0	0	NA	6qB1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.778111591	sgMsh2	cell line
chr6	30815960	30815960	A	G	ENSMUST00000048774.12	1	ENSMUSG00000025607	missense	V/A	480	Copg2	ENSMUST00000048774.12:c.1439T>C	ENSMUSP00000038368.6:p.Val480Ala	H-2-Kb	8	4	8	IRFIFNRA	IRFIFNRV	SMMPMBEC	232.135	48.277	0.208	162	0.16	482.306	47.673	0.099	40.71	683.59	149.1	1240.7	47.06954498	281.0217928	48.27696948	232.1346655	M5_p20	-0.085714286	0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.155	162	0	0	NA	6qA3.3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.666338655	sgMsh2	cell line
chr6	46988685	46988685	T	C	ENSMUST00000114641.7	1	ENSMUSG00000039419	missense	L/P	810	Cntnap2	ENSMUST00000114641.7:c.2429T>C	ENSMUSP00000110288.1:p.Leu810Pro	H-2-Kb	9	8	4	SSYPHFSTF	SSYLHFSTF	NetMHCpan	7.9	6.6	0.835	258	0.062	17.262	10.622	0.615	8.21	12.59	6.6	7.9	13.03496892	21.93360409	17.14944225	28.13519957	M5_p20	-0.285714286	-0.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.07	258	0	0	NA	6qB2.3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.300927135	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	9	3	9	LVLVSYTRL	LVLVSYTRI	NetMHC	46.33	202.94	4.38	173	0.266	99.281	285.444	2.875	202.94	46.33	207.6	48.9	371.6293451	149.6614677	363.2871195	157.1267038	M5_p20	0.642857143	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.282	173	0	0	NA	6qB2.1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	2	1	sgMsh2	cell line
chr6	41394716	41394716	A	G	ENSMUST00000049079.8	1	ENSMUSG00000058119	missense	N/S	32	Gm5771	ENSMUST00000049079.8:c.95A>G	ENSMUSP00000039684.7:p.Asn32Ser	H-2-Kb	9	11	1	SSVPYQVSL	NSVPYQVSL	NetMHCpan	55	427.2	7.767	765	0.064	192.657	1089.876	5.657	863.77	57.03	427.2	55	1486.312054	344.4371603	1315.982154	328.2842143	M5_p20	0.714285714	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.072	765	0	0	NA	6qB1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.309525053	sgMsh2	cell line
chr5	145986842	145986842	GT	G	ENSMUST00000068317.12	1	ENSMUSG00000029630	FS	K/X	330	Cyp3a25	ENSMUST00000068317.12:c.990del	ENSMUSP00000065585.6:p.Lys330AsnfsTer21	H-2-Kb	9	8	4	VQKNFRMRL	NA	NetMHC	89.9	NA	NA	282	0.262	315.881	NA	NA	NA	89.9	NA	199	NA	496.7181164	NA	432.7628777	M5_p20	-1.128571429	-0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.264	282	0	0	NA	5qG2	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr6	48044616	48044616	G	A	ENSMUST00000114583.7	5	ENSMUSG00000071477	missense	P/L	68	Zfp777	ENSMUST00000114583.7:c.203C>T	ENSMUSP00000110230.1:p.Pro68Leu	H-2-Kb	9	6	6	SVRQALARL	SVRQAPARL	NetMHC	183.35	942.96	5.143	196	0.204	430.916	1431.822	3.323	942.96	183.35	1791.7	342.9	1222.109162	518.9314595	1641.534444	687.4640623	M5_p20	-0.185714286	0.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.225	196	0	0	NA	6qB2.3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.96726579	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	9	4	8	VLVSYTRLL	VLVSYTRIL	NetMHCpan	118.1	254.3	2.153	173	0.266	338.726	712.479	2.103	683.46	204.18	254.3	118.1	741.4980274	473.271116	959.9530659	622.6586131	M5_p20	0.642857143	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.282	173	0	0	NA	6qB2.1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	2	1	sgMsh2	cell line
chr5	137758482	137758482	TG	T	ENSMUST00000110985.1	2	ENSMUSG00000029723	FS	L/X	57	Tsc22d4	ENSMUST00000110985.1:c.177del	ENSMUSP00000106613.1:p.Pro60GlnfsTer18	H-2-Kb	9	22	0	VGWTKAFSL	NA	NetMHCpan	103.3	NA	NA	38	0.5	321.493	NA	NA	NA	216.16	NA	103.3	NA	472.1826226	NA	426.8251484	M5_p20	0.3	0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.532	38	0	0	NA	5qG2	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	2	1	sgMsh2	cell line
chr5	147315169	147315169	T	C	ENSMUST00000100433.4	1	ENSMUSG00000075543	missense	S/G	158	Urad	ENSMUST00000100433.4:c.472A>G	ENSMUSP00000098000.3:p.Ser158Gly	H-2-Kb	9	10	2	IGHLRLTDL	ISHLRLTDL	NetMHC	322.75	98.24	0.304	94	0.287	388.562	137.299	0.353	98.24	322.75	151.5	451.1	159.261206	457.2039776	123.0977174	326.0243217	M5_p20	-0.071428571	0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.288	94	0	0	NA	5qG3	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr6	42286884	42286884	TG	T	ENSMUST00000031894.12	1	ENSMUSG00000029862	FS	G/X	40	Clcn1	ENSMUST00000031894.12:c.122del	ENSMUSP00000031894.6:p.Gly41AlafsTer70	H-2-Kb	9	60	0	TAWMRTTIL	NA	NetMHCpan	157.5	NA	NA	112	0.098	221.615	NA	NA	NA	328.86	NA	157.5	NA	251.2522734	NA	191.9773533	M5_p20	0.485714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0982	112	0	0	NA	6qB2.1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.42215778	sgMsh2	cell line
chr5	138163817	138163817	T	C	ENSMUST00000019638.14	1	ENSMUSG00000019494	missense	F/L	306	Cops6	ENSMUST00000019638.14:c.916T>C	ENSMUSP00000019638.8:p.Phe306Leu	H-2-Kb	9	3	9	TMNQFVNKL	TMNQFVNKF	NetMHCpan	247.8	1202.9	4.854	203	0.241	353.705	942.706	2.665	1285.45	369.15	1202.9	247.8	682.5115418	404.6783774	585.1268133	338.259498	M5_p20	-0.514285714	-0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.256	203	0	0	NA	5qG2	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	9	6	6	VSYTRLLVA	VSYTRILVA	NetMHCpan	129.9	163.6	1.259	173	0.266	176.155	270.535	1.536	712.71	415.25	163.6	129.9	323.6756285	203.287184	217.3952246	149.021867	M5_p20	1.014285714	1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.282	173	0	0	NA	6qB2.1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	2	1	sgMsh2	cell line
chr6	15403822	15403822	CT	C	ENSMUST00000115477.7	1	ENSMUSG00000029563	FS	L/X	366	Foxp2	ENSMUST00000115477.7:c.1098del	ENSMUSP00000111137.1:p.Asn367ThrfsTer24	H-2-Kb	9	14	0	SMHWMTEAL	NA	SMM	342.855	NA	NA	360	0.186	450.119	NA	NA	NA	463.47	NA	482.4	NA	342.8546153	NA	436.7671833	M5_p20	-0.114285714	-0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.189	360	0	0	NA	6qA1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.812503264	sgMsh2	cell line
chr6	57600007	57600007	T	C	ENSMUST00000031817.9	1	ENSMUSG00000029798	missense	L/P	235	Herc6	ENSMUST00000031817.9:c.704T>C	ENSMUSP00000031817.8:p.Leu235Pro	H-2-Db	9	6	6	GALKNPSVI	GALKNLSVI	NetMHC	13.46	7.99	0.594	202	0.178	47.099	27.26	0.579	7.99	13.46	16.8	37.5	48.2636319	70.24574131	37.71985373	56.6982951	M5_p20	0.385714286	0.385714286	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.193	202	0	0	NA	6qB3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.8296991	sgMsh2	cell line
chr6	107567567	107567567	A	G	ENSMUST00000049285.9	1	ENSMUSG00000034648	missense	N/D	109	Lrrn1	ENSMUST00000049285.9:c.325A>G	ENSMUSP00000037096.8:p.Asn109Asp	H-2-Db	9	4	8	FSQNNFTDI	FSQNNFTNI	NetMHC	98.08	74.23	0.757	208	0.188	115.299	90.521	0.785	74.23	98.08	73.3	114.3	106.8119884	136.3389673	112.3492041	116.2973985	M5_p20	-1.057142857	-0.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.203	208	0	0	NA	6qE1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.872688691	sgMsh2	cell line
chr6	102165349	102165349	A	G	ENSMUST00000203619.2	1	ENSMUSG00000030075	missense	L/P	1019	Cntn3	ENSMUST00000203619.2:c.3056T>C	ENSMUSP00000145176.1:p.Leu1019Pro	H-2-Kb	8	6	7	SGYMSVPL	SGYMSVLL	NetMHC	12.64	35.42	2.802	294	0.207	39.225	92.197	2.35	35.42	12.64	42.9	26	141.4946437	53.42444264	144.4574685	52.44933667	M5_p20	0.828571429	0.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.202	294	0	0	NA	6qD3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.868389731	sgMsh2	cell line
chr6	69764667	69764667	A	G	ENSMUST00000103365.2	NA	ENSMUSG00000076564	missense	V/A	68	Igkv12-46	ENSMUST00000103365.2:c.203T>C	ENSMUSP00000100166.1:p.Val68Ala	H-2-Kb	8	10	2	LAYAATNL	LVYAATNL	NetMHC	23.51	26.96	1.147	429	0.231	54.108	53.293	0.985	26.96	23.51	27.2	30.1	79.38528349	78.11600059	82.93541077	89.68916897	M5_p20	0.528571429	0.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.228	429	0	0	NA	6qC1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.980162667	sgMsh2	cell line
chr6	114302629	114302629	A	G	ENSMUST00000032454.7	1	ENSMUSG00000030310	missense	K/R	123	Slc6a1	ENSMUST00000032454.7:c.368A>G	ENSMUSP00000032454.5:p.Lys123Arg	H-2-Kb	8	6	6	LAPMFRGV	LAPMFKGV	NetMHC	85.05	307.58	3.616	127	0.189	326.028	633.35	1.943	307.58	85.05	408.2	184.6	1126.522836	545.4312289	858.499408	467.4552051	M5_p20	0.6	0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.191	127	0	0	NA	6qE3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.821101182	sgMsh2	cell line
chr6	124908510	124908510	CG	C	ENSMUST00000032217.1	1	ENSMUSG00000030124	FS	P/X	302	Lag3	ENSMUST00000032217.1:c.906del	ENSMUSP00000032217.1:p.Val303TrpfsTer45	H-2-Kb	8	16	0	VAILPFTL	NA	NetMHC	108.05	NA	NA	84	0.179	209.178	NA	NA	NA	108.05	NA	108.8	NA	309.5565516	NA	376.4783444	M5_p20	2.057142857	2.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.192	84	0	0	NA	6qF2	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.825400141	sgMsh2	cell line
chr6	116702006	116702006	GC	G	ENSMUST00000056623.12	1	ENSMUSG00000048108	FS	G/X	36	Tmem72	ENSMUST00000056623.12:c.108del	ENSMUSP00000057942.6:p.Arg37GlyfsTer77	H-2-Kb	8	80	0	STLSWSGM	NA	NetMHC	165.56	NA	NA	70	0.157	251.323	NA	NA	NA	165.56	NA	224.2	NA	308.8445912	NA	278.4453695	M5_p20	0.3	0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.167	70	0	0	NA	6qE3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.717926164	sgMsh2	cell line
chr6	102165349	102165349	A	G	ENSMUST00000203619.2	1	ENSMUSG00000030075	missense	L/P	1019	Cntn3	ENSMUST00000203619.2:c.3056T>C	ENSMUSP00000145176.1:p.Leu1019Pro	H-2-Kb	8	10	3	SVPLFFIV	SVLLFFIV	NetMHC	165.71	136.51	0.824	294	0.207	287.957	185.213	0.643	136.51	165.71	344.1	182.6	167.7799266	393.3145385	202.6469166	520.8827797	M5_p20	2.957142857	2.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.202	294	0	0	NA	6qD3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.868389731	sgMsh2	cell line
chr6	123815817	123815817	T	C	ENSMUST00000075095.6	5	ENSMUSG00000072780	missense	M/T	701	Vmn2r24	ENSMUST00000075095.6:c.2102T>C	ENSMUSP00000074602.5:p.Met701Thr	H-2-Kb	8	6	6	QMWMVTRL	QMWMVMRL	NetMHC	249.67	165.69	0.664	903	0.194	456.149	439.641	0.964	165.69	249.67	358.4	310.1	520.8827797	666.4076901	533.0156983	602.1989584	M5_p20	0.814285714	0.814285714	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.19	903	0	0	NA	6qF2	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.816802223	sgMsh2	cell line
chr6	125980155	125980155	A	G	ENSMUST00000160496.7	1	ENSMUSG00000038115	missense	K/R	629	Ano2	ENSMUST00000160496.7:c.1886A>G	ENSMUSP00000125303.1:p.Lys629Arg	H-2-Kb	8	6	6	KAFLLRFV	KAFLLKFV	NetMHCpan	272.4	547.6	2.01	355	0.127	351.17	682.716	1.944	1229.78	480.77	547.6	272.4	681.9303192	330.1718172	683.502331	372.1688324	M5_p20	2.1	2.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.126	355	0	0	NA	6qF3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.541668842	sgMsh2	cell line
chr6	123786737	123786737	C	T	ENSMUST00000075095.6	5	ENSMUSG00000072780	missense	P/L	191	Vmn2r24	ENSMUST00000075095.6:c.572C>T	ENSMUSP00000074602.5:p.Pro191Leu	H-2-Kb	8	4	8	TSVQLQSL	TSVQLQSP	SMM	371.313	8989.592	24.21	560	0.182	474.886	16488.746	34.721	30943.58	569.81	23120.6	613.2	8989.592386	371.3128679	9856.892043	379.9618556	M5_p20	0.457142857	0.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.186	560	0	0	NA	6qF2	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.799606386	sgMsh2	cell line
chr6	85808552	85808552	G	T	ENSMUST00000174143.1	3	ENSMUSG00000079495	missense	S/Y	205	Nat8f6	ENSMUST00000174143.1:c.614C>A	ENSMUSP00000133846.1:p.Ser205Tyr	H-2-Kb	8	7	5	YTYLYRLR	YTYLSRLR	SMM	195.317	3025.102	15.488	266	0.143	483.949	7510.367	15.519	12503.92	670.91	9775.8	1412.4	3025.101842	195.3169797	5244.933667	296.9887511	M5_p20	-0.671428571	-0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.165	266	0	0	NA	6qC3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.709328246	sgMsh2	cell line
chr6	124908510	124908510	CG	C	ENSMUST00000032217.1	1	ENSMUSG00000030124	FS	P/X	302	Lag3	ENSMUST00000032217.1:c.906del	ENSMUSP00000032217.1:p.Val303TrpfsTer45	H-2-Kb	8	24	0	RLWVWHRL	NA	SMMPMBEC	207.367	NA	NA	84	0.179	336.204	NA	NA	NA	1111.14	NA	304.5	NA	367.908651	NA	207.3671696	M5_p20	0.328571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.192	84	0	0	NA	6qF2	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.825400141	sgMsh2	cell line
chr6	85808552	85808552	G	T	ENSMUST00000174143.1	3	ENSMUSG00000079495	missense	S/Y	205	Nat8f6	ENSMUST00000174143.1:c.614C>A	ENSMUSP00000133846.1:p.Ser205Tyr	H-2-Kb	9	5	7	TFYTYLYRL	TFYTYLSRL	NetMHCpan	18.5	10.9	0.589	266	0.143	36.103	23.831	0.66	14.91	27.63	10.9	18.5	33.65968133	44.57691405	32.75291816	47.34237051	M5_p20	-0.214285714	0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.165	266	0	0	NA	6qC3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.709328246	sgMsh2	cell line
chr6	124908510	124908510	CG	C	ENSMUST00000032217.1	1	ENSMUSG00000030124	FS	P/X	302	Lag3	ENSMUST00000032217.1:c.906del	ENSMUSP00000032217.1:p.Val303TrpfsTer45	H-2-Kb	9	17	0	AILPFTLRL	NA	NetMHCpan	45.3	NA	NA	84	0.179	185.425	NA	NA	NA	88.29	NA	45.3	NA	282.5595563	NA	326.7758854	M5_p20	1.057142857	2.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.192	84	0	0	NA	6qF2	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.825400141	sgMsh2	cell line
chr6	88376284	88376284	T	C	ENSMUST00000165242.3	1	ENSMUSG00000033216	missense	I/M	134	Eefsec	ENSMUST00000165242.3:c.402A>G	ENSMUSP00000131207.1:p.Ile134Met	H-2-Kb	9	6	6	VVLNKMDLL	VVLNKIDLL	NetMHC	194.98	282.9	1.451	264	0.129	240.347	302.184	1.257	282.9	194.98	707	550.8	308.3968972	253.577082	295.9715726	227.1171867	M5_p20	0.342857143	0.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.137	264	0	0	NA	6qD1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.588957392	sgMsh2	cell line
chr6	114701198	114701198	G	A	ENSMUST00000169310.9	1	ENSMUSG00000030314	missense	G/S	350	Atg7	ENSMUST00000169310.9:c.1048G>A	ENSMUSP00000133215.3:p.Gly350Ser	H-2-Kb	9	11	1	SMGPRMVNL	GMGPRMVNL	SMMPMBEC	209.05	519.099	2.483	304	0.188	229.621	1238.386	5.393	1812.86	224.76	2317.3	239.5	663.9112074	234.4822647	519.0987702	209.0499173	M5_p20	-0.014285714	0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.185	304	0	0	NA	6qE3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.795307427	sgMsh2	cell line
chr6	108399280	108399280	C	T	ENSMUST00000032192.8	1	ENSMUSG00000030102	missense	R/W	1235	Itpr1	ENSMUST00000032192.8:c.3703C>T	ENSMUSP00000032192.6:p.Arg1235Trp	H-2-Kb	9	9	3	IMWLAHEFL	IMRLAHEFL	NetMHCpan	173.3	364.8	2.105	151	0.159	275.443	622.207	2.259	738.74	227.21	364.8	173.3	566.3827268	323.6756285	678.0317017	326.7758854	M5_p20	0.657142857	0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.16	151	0	0	NA	6qE1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.687833451	sgMsh2	cell line
chr6	108380923	108380923	A	T	ENSMUST00000032192.8	1	ENSMUSG00000030102	missense	K/M	521	Itpr1	ENSMUST00000032192.8:c.1562A>T	ENSMUSP00000032192.6:p.Lys521Met	H-2-Kb	9	9	3	IFMLLQAPF	IFKLLQAPF	NetMHC	243.96	1098.72	4.504	88	0.239	381.453	1088.97	2.855	1098.72	243.96	1897.8	649.4	1079.220037	368.2222268	940.2644145	394.6844353	M5_p20	1.285714286	2.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.225	88	0	0	NA	6qE1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.96726579	sgMsh2	cell line
chr6	57258876	57258876	T	C	ENSMUST00000228297.1	NA	ENSMUSG00000115199	missense	V/A	243	Vmn1r15	ENSMUST00000228297.1:c.728T>C	ENSMUSP00000154252.1:p.Val243Ala	H-2-Kb	9	5	7	FVVMYWADF	FVVMYWVDF	NetMHC	306.14	761.72	2.488	424	0.167	379.005	706.007	1.863	761.72	306.14	3331.3	836.6	650.2943789	450.9309038	416.1500968	307.0789168	M5_p20	0.714285714	1.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.173	424	0	0	NA	6qB3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.743719919	sgMsh2	cell line
chr6	102165349	102165349	A	G	ENSMUST00000203619.2	1	ENSMUSG00000030075	missense	L/P	1019	Cntn3	ENSMUST00000203619.2:c.3056T>C	ENSMUSP00000145176.1:p.Leu1019Pro	H-2-Kb	9	6	7	SGYMSVPLF	SGYMSVLLF	NetMHCpan	163.2	245.5	1.504	294	0.207	445.705	500.316	1.123	368.06	365.26	245.5	163.2	632.5720517	526.1505152	653.5066331	561.3710342	M5_p20	1.285714286	1.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.202	294	0	0	NA	6qD3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.868389731	sgMsh2	cell line
chr6	123815817	123815817	T	C	ENSMUST00000075095.6	5	ENSMUSG00000072780	missense	M/T	701	Vmn2r24	ENSMUST00000075095.6:c.2102T>C	ENSMUSP00000074602.5:p.Met701Thr	H-2-Kb	9	8	4	WMVTRLSNV	WMVMRLSNV	SMMPMBEC	371.749	308.496	0.83	903	0.194	393.346	326.071	0.829	273.51	374.49	1055.2	1159.9	343.6449768	412.2019102	308.4963287	371.7491635	M5_p20	0.385714286	0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.19	903	0	0	NA	6qF2	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.816802223	sgMsh2	cell line
chr6	113578387	113578387	T	A	ENSMUST00000036340.11	1	ENSMUSG00000034023	missense	F/Y	1119	Fancd2	ENSMUST00000036340.11:c.3356T>A	ENSMUSP00000045667.5:p.Phe1119Tyr	H-2-Kb	9	3	9	QSFSYLQNY	QSFSYLQNF	SMM	108.67	62.389	0.574	196	0.133	297.381	61.045	0.205	32.08	374.85	59.7	1857.1	62.38928378	108.6700833	111.2371876	219.9125427	M5_p20	-0.542857143	-0.471428571	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.132	196	0	0	NA	6qE3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.567462597	sgMsh2	cell line
chr6	57258876	57258876	T	C	ENSMUST00000228297.1	NA	ENSMUSG00000115199	missense	V/A	243	Vmn1r15	ENSMUST00000228297.1:c.728T>C	ENSMUSP00000154252.1:p.Val243Ala	H-2-Kb	9	7	5	VMYWADFII	VMYWVDFII	SMM	154.565	218.328	1.413	424	0.167	312.379	430.03	1.377	602.28	395.01	1029	537.3	218.3282833	154.5645878	257.7804634	229.7470798	M5_p20	1.128571429	1.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.173	424	0	0	NA	6qB3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.743719919	sgMsh2	cell line
chr6	102165349	102165349	A	G	ENSMUST00000203619.2	1	ENSMUSG00000030075	missense	L/P	1019	Cntn3	ENSMUST00000203619.2:c.3056T>C	ENSMUSP00000145176.1:p.Leu1019Pro	H-2-Kb	9	5	8	LSGYMSVPL	LSGYMSVLL	SMM	338.15	430.636	1.274	294	0.207	473.33	733.728	1.55	954.3	578.32	2156.5	1287.4	430.63567	338.1504736	513.1566957	368.3409467	M5_p20	0.828571429	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.202	294	0	0	NA	6qD3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.868389731	sgMsh2	cell line
chr7	26611187	26611187	T	C	ENSMUST00000228367.1	NA	ENSMUSG00000091924	missense	M/V	298	Vmn1r185	ENSMUST00000228367.1:c.892A>G	ENSMUSP00000154816.1:p.Met298Val	H-2-Db	9	8	4	YSLVSRFNL	YSLMSRFNL	NetMHC	136.82	215.91	1.578	218	0.312	299.155	452.516	1.513	215.91	136.82	303	280.9	602.0325877	317.4095578	657.007005	372.8807814	M5_p20	0.828571429	0.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.312	218	0	0	NA	7qA3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr6	132737416	132737416	C	T	ENSMUST00000095394.3	NA	ENSMUSG00000071149	missense	G/S	191	Tas2r115	ENSMUST00000095394.3:c.571G>A	ENSMUSP00000093043.2:p.Gly191Ser	H-2-Db	9	10	2	FSVSLIAFL	FGVSLIAFL	NetMHC	146.19	426.79	2.919	228	0.11	287.49	902.345	3.139	426.79	146.19	1037.1	472.3	934.5875687	284.1973343	870.1016656	290.783661	M5_p20	2.871428571	2.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.115	228	0	0	NA	6qG1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.494380293	sgMsh2	cell line
chr7	25272796	25272796	A	G	ENSMUST00000169266.7	1	ENSMUSG00000005442	missense	I/V	651	Cic	ENSMUST00000169266.7:c.1951A>G	ENSMUSP00000132351.1:p.Ile651Val	H-2-Db	10	2	10	FSPINASPVV	FSPINASPVI	NetMHC	14.9	8.41	0.564	38	0.289	465.206	229.143	0.493	8.41	14.9	34.4	92.4	423.8869047	838.0115415	542.8376978	1013.141255	M5_p20	1.257142857	1.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.286	38	0	0	NA	7qA3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr7	19643130	19643130	A	C	ENSMUST00000055242.10	1	ENSMUSG00000002981	missense	F/V	170	Clptm1	ENSMUST00000055242.10:c.508T>G	ENSMUSP00000051293.9:p.Phe170Val	H-2-Kb	8	4	8	SIYIHVYV	SIYIHVYF	NetMHC	15.47	62.57	4.045	170	0.229	41.881	121.629	2.904	62.57	15.47	80.8	57.4	162.4575876	35.70590129	166.6249377	48.05515695	M5_p20	1.657142857	1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.23	170	0	0	NA	7qA3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	0.988760585	sgMsh2	cell line
chr6	134451069	134451069	T	C	ENSMUST00000032322.14	1	ENSMUSG00000030201	missense	Y/C	1520	Lrp6	ENSMUST00000032322.14:c.4559A>G	ENSMUSP00000032322.8:p.Tyr1520Cys	H-2-Kb	8	4	8	RSYSYRPC	RSYSYRPY	NetMHC	22.95	107.06	4.665	117	0.179	38.31	109.727	2.864	107.06	22.95	418.8	63.3	112.3931906	35.05419514	72.90209351	41.56616909	M5_p20	-1.114285714	-1.114285714	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.173	117	0	0	NA	6qG1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.743719919	sgMsh2	cell line
chr7	28320255	28320255	A	G	ENSMUST00000209141.1	1	ENSMUSG00000003435	missense	F/L	497	Supt5	ENSMUST00000209141.1:c.1489T>C	ENSMUSP00000147164.1:p.Phe497Leu	H-2-Kb	8	11	1	LVILFSDL	FVILFSDL	NetMHCpan	33.8	63.7	1.885	121	0.157	68.106	75.272	1.105	40.58	34.18	63.7	33.8	93.70008827	130.2386842	86.84403626	102.0328459	M5_p20	2.114285714	2.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.16	121	0	0	NA	7qA3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	0.687833451	sgMsh2	cell line
chr7	6461136	6461136	T	C	ENSMUST00000214301.2	5	ENSMUSG00000048620	missense	V/A	209	Olfr1336	ENSMUST00000214301.2:c.626T>C	ENSMUSP00000150162.1:p.Val209Ala	H-2-Kb	8	10	2	IAILWGSL	IVILWGSL	NetMHCpan	26.7	38.1	1.427	399	0.231	48.129	52.985	1.101	49.64	35.34	38.1	26.7	82.36448742	81.04757034	56.33003227	60.91720937	M5_p20	1.685714286	1.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	399	0	0	NA	7qA1	chr7-3489139-7297085	4	2	2	0.97	4.169990295	NA	1	0.975863708	sgMsh2	cell line
chr7	20811432	20811432	A	C	ENSMUST00000098737.1	NA	ENSMUSG00000094085	missense	L/R	252	Vmn1r114	ENSMUST00000098737.1:c.755T>G	ENSMUSP00000096333.1:p.Leu252Arg	H-2-Kb	8	5	7	TFVSFYRL	TFVSFYLL	SMM	34.414	76.867	2.234	176	0.29	37.833	93.225	2.464	110.25	39.38	100.6	57.1	76.86701211	34.41438398	85.8499408	36.28607551	M5_p20	1	1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.297	176	0	0	NA	7qA3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr7	20811432	20811432	A	C	ENSMUST00000098737.1	NA	ENSMUSG00000094085	missense	L/R	252	Vmn1r114	ENSMUST00000098737.1:c.755T>G	ENSMUSP00000096333.1:p.Leu252Arg	H-2-Kb	8	7	5	VSFYRLNF	VSFYLLNF	NetMHCpan	26.2	40.2	1.534	176	0.29	184.82	84.516	0.457	49.43	57.22	40.2	26.2	135.4378341	397.8689062	119.6024291	312.4208431	M5_p20	-0.1	0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.297	176	0	0	NA	7qA3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr6	141532679	141532679	A	G	ENSMUST00000032362.11	1	ENSMUSG00000030235	missense	K/R	56	Slco1c1	ENSMUST00000032362.11:c.167A>G	ENSMUSP00000032362.9:p.Lys56Arg	H-2-Kb	8	4	8	LSFVYFAR	LSFVYFAK	NetMHC	71.6	273.33	3.817	135	0.067	97.337	165.283	1.698	273.33	71.6	241.7	126.8	88.86689373	86.84403626	56.4598864	107.830098	M5_p20	0.714285714	1.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.089	135	0	0	NA	6qG2	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.382607357	sgMsh2	cell line
chr6	141532679	141532679	A	G	ENSMUST00000032362.11	1	ENSMUSG00000030235	missense	K/R	56	Slco1c1	ENSMUST00000032362.11:c.167A>G	ENSMUSP00000032362.9:p.Lys56Arg	H-2-Kb	8	5	7	SFVYFARA	SFVYFAKA	NetMHC	104.42	421.4	4.036	135	0.067	172.62	538.576	3.12	421.4	104.42	215.7	105.5	804.8964279	281.6696149	655.752568	239.7397234	M5_p20	1.085714286	1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.089	135	0	0	NA	6qG2	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.382607357	sgMsh2	cell line
chr6	141532679	141532679	A	G	ENSMUST00000032362.11	1	ENSMUSG00000030235	missense	K/R	56	Slco1c1	ENSMUST00000032362.11:c.167A>G	ENSMUSP00000032362.9:p.Lys56Arg	H-2-Kb	8	6	6	FVYFARAL	FVYFAKAL	NetMHCpan	53.9	100.9	1.872	135	0.067	100.957	211.274	2.093	281	106.91	100.9	53.9	196.218522	95.00358634	226.3288934	123.2366829	M5_p20	1.228571429	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.089	135	0	0	NA	6qG2	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.382607357	sgMsh2	cell line
chr7	4469203	4469203	GA	G	ENSMUST00000163893.7	1	ENSMUSG00000006154	FS	R/X	22	Eps8l1	ENSMUST00000163893.7:c.69del	ENSMUSP00000125840.1:p.Lys23AsnfsTer56	H-2-Kb	8	6	7	SIYEQRNV	SIYEQRKR	SMM	80.305	2021.808	25.177	227	0.251	140.518	10629.403	75.645	16431.11	121.91	19443.2	292.4	2021.808416	80.30452175	4827.696948	159.1255801	M5_p20	-1.085714286	-1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.249	227	0	0	NA	7qA1	chr7-3489139-7297085	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr6	134451076	134451076	T	C	ENSMUST00000032322.14	1	ENSMUSG00000030201	missense	R/G	1518	Lrp6	ENSMUST00000032322.14:c.4552A>G	ENSMUSP00000032322.8:p.Arg1518Gly	H-2-Kb	8	6	6	RSYSYGPY	RSYSYRPY	SMMPMBEC	72.902	72.902	1	109	0.193	122.156	109.727	0.898	107.06	123.88	418.8	436.7	112.3931906	120.4314735	72.90209351	72.90209351	M5_p20	-1.071428571	-1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.188	109	0	0	NA	6qG1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.808204305	sgMsh2	cell line
chr6	134451069	134451069	T	C	ENSMUST00000032322.14	1	ENSMUSG00000030201	missense	Y/C	1520	Lrp6	ENSMUST00000032322.14:c.4559A>G	ENSMUSP00000032322.8:p.Tyr1520Cys	H-2-Kb	8	11	1	CSYRHFAP	YSYRHFAP	NetMHC	134.9	77.72	0.576	117	0.179	195.012	134.543	0.69	77.72	134.9	80.4	161.6	188.68614	228.4230889	247.5939338	382.5956254	M5_p20	-0.971428571	-0.385714286	TRUE	FALSE	TRUE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.173	117	0	0	NA	6qG1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.743719919	sgMsh2	cell line
chr7	10715340	10715340	GT	G	ENSMUST00000117413.8	1	ENSMUSG00000034087	FS	V/X	490	Nlrp4b	ENSMUST00000117413.8:c.1475del	ENSMUSP00000113095.1:p.Leu492TrpfsTer29	H-2-Kb	8	11	3	VFWAVSSL	NA	SMM	90.728	NA	NA	44	0.295	123.855	NA	NA	NA	168.69	NA	143.3	NA	90.7277206	NA	104.4094962	M5_p20	1.442857143	1.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.274	44	0	0	NA	7qA1	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr7	30360056	30360056	TC	T	ENSMUST00000046351.6	1	ENSMUSG00000036957	FS	G/X	248	Lrfn3	ENSMUST00000046351.6:c.743del	ENSMUSP00000037616.5:p.Gly248GlufsTer51	H-2-Kb	8	52	0	RSLCVSHL	NA	NetMHC	210.36	NA	NA	42	0.333	246.033	NA	NA	NA	210.36	NA	400	NA	227.3735801	NA	264.691503	M5_p20	1.357142857	1.357142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.319	42	0	0	NA	7qB1	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr7	26611187	26611187	T	C	ENSMUST00000228367.1	NA	ENSMUSG00000091924	missense	M/V	298	Vmn1r185	ENSMUST00000228367.1:c.892A>G	ENSMUSP00000154816.1:p.Met298Val	H-2-Kb	8	4	8	FMRSYSLV	FMRSYSLM	NetMHC	238.94	166.52	0.697	218	0.312	450.026	344.108	0.765	166.52	238.94	202.1	466.8	486.1160944	433.2514252	558.1359543	516.1072977	M5_p20	0.357142857	0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.312	218	0	0	NA	7qA3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr7	20811432	20811432	A	C	ENSMUST00000098737.1	NA	ENSMUSG00000094085	missense	L/R	252	Vmn1r114	ENSMUST00000098737.1:c.755T>G	ENSMUSP00000096333.1:p.Leu252Arg	H-2-Kb	8	8	4	SFYRLNFI	SFYLLNFI	SMM	208.324	253.945	1.219	176	0.29	287.812	360.605	1.253	384.9	302.26	580.9	398	253.9451951	208.324333	336.3101696	273.3631687	M5_p20	0.657142857	0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.297	176	0	0	NA	7qA3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr7	10715340	10715340	GT	G	ENSMUST00000117413.8	1	ENSMUSG00000034087	FS	V/X	490	Nlrp4b	ENSMUST00000117413.8:c.1475del	ENSMUSP00000113095.1:p.Leu492TrpfsTer29	H-2-Kb	8	16	0	SSLVFYMK	NA	SMMPMBEC	146.467	NA	NA	44	0.295	418.089	NA	NA	NA	663.3	NA	1138.5	NA	172.8781076	NA	146.4670721	M5_p20	0.957142857	1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.274	44	0	0	NA	7qA1	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr7	10715340	10715340	GT	G	ENSMUST00000117413.8	1	ENSMUSG00000034087	FS	V/X	490	Nlrp4b	ENSMUST00000117413.8:c.1475del	ENSMUSP00000113095.1:p.Leu492TrpfsTer29	H-2-Kb	8	8	6	KQWVFWAV	KQWVFLGC	SMMPMBEC	237.542	1212.663	5.105	44	0.295	376.978	2692.26	7.142	6182.8	706.08	4011.3	486.2	1373.219621	267.7564861	1212.662646	237.5417764	M5_p20	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.274	44	0	0	NA	7qA1	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr7	13028552	13028552	C	A	ENSMUST00000005705.7	1	ENSMUSG00000005566	missense	L/M	368	Trim28	ENSMUST00000005705.7:c.1102C>A	ENSMUSP00000005705.7:p.Leu368Met	H-2-Kb	8	9	3	KKMIYFQL	KKLIYFQL	SMMPMBEC	242.516	183.967	0.759	106	0.292	424.719	506.319	1.192	828.67	832.15	1033.4	533.4	183.9670312	316.0385059	183.9670312	242.5157786	M5_p20	0.614285714	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.298	106	0	0	NA	7qA1	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr6	141532679	141532679	A	G	ENSMUST00000032362.11	1	ENSMUSG00000030235	missense	K/R	56	Slco1c1	ENSMUST00000032362.11:c.167A>G	ENSMUSP00000032362.9:p.Lys56Arg	H-2-Kb	9	4	8	LSFVYFARA	LSFVYFAKA	NetMHC	8.07	18.23	2.259	135	0.067	41.355	63.038	1.524	18.23	8.07	19.6	12.2	162.2220929	88.94263671	106.4755765	70.50988397	M5_p20	1.085714286	1.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.089	135	0	0	NA	6qG2	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.382607357	sgMsh2	cell line
chr7	20811432	20811432	A	C	ENSMUST00000098737.1	NA	ENSMUSG00000094085	missense	L/R	252	Vmn1r114	ENSMUST00000098737.1:c.755T>G	ENSMUSP00000096333.1:p.Leu252Arg	H-2-Kb	9	4	8	VTFVSFYRL	VTFVSFYLL	NetMHCpan	6.8	12.1	1.779	176	0.29	21.871	25.326	1.158	15.89	9.85	12.1	6.8	34.76241981	33.89299909	50.72826396	43.47604204	M5_p20	1	1.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.297	176	0	0	NA	7qA3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr7	20811432	20811432	A	C	ENSMUST00000098737.1	NA	ENSMUSG00000094085	missense	L/R	252	Vmn1r114	ENSMUST00000098737.1:c.755T>G	ENSMUSP00000096333.1:p.Leu252Arg	H-2-Kb	9	7	5	VSFYRLNFI	VSFYLLNFI	NetMHCpan	27.3	73.8	2.703	176	0.29	41.581	100.16	2.409	75.55	32.8	73.8	27.3	124.7699497	50.36281538	145.2947761	54.2312981	M5_p20	0.657142857	0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.297	176	0	0	NA	7qA3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr7	26611187	26611187	T	C	ENSMUST00000228367.1	NA	ENSMUSG00000091924	missense	M/V	298	Vmn1r185	ENSMUST00000228367.1:c.892A>G	ENSMUSP00000154816.1:p.Met298Val	H-2-Kb	9	11	1	VSRFNLAHL	MSRFNLAHL	NetMHC	34.25	88.62	2.587	218	0.312	91.603	217.283	2.372	88.62	34.25	130.4	64.6	304.1655332	118.6069123	327.5291816	126.5464598	M5_p20	0.142857143	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.312	218	0	0	NA	7qA3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr6	131689760	131689760	T	C	ENSMUST00000080619.2	NA	ENSMUSG00000063478	missense	S/G	102	Tas2r114	ENSMUST00000080619.2:c.304A>G	ENSMUSP00000079453.2:p.Ser102Gly	H-2-Kb	9	4	8	LNVWFATGL	LNVWFATSL	NetMHCpan	26.7	27.4	1.026	293	0.15	169.649	197.812	1.166	62.88	42.74	27.4	26.7	332.7438214	296.558243	351.7628732	346.1385739	M5_p20	1.514285714	1.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.162	293	0	0	NA	6qF3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.696431369	sgMsh2	cell line
chr6	134520435	134520435	A	C	ENSMUST00000032322.14	1	ENSMUSG00000030201	missense	L/R	203	Lrp6	ENSMUST00000032322.14:c.608T>G	ENSMUSP00000032322.8:p.Leu203Arg	H-2-Kb	9	11	1	RNFIHKSNL	LNFIHKSNL	NetMHCpan	24.8	15.1	0.609	231	0.208	96.035	60.832	0.633	39.77	43.78	15.1	24.8	87.5205423	148.2893631	81.893607	152.4930322	M5_p20	-0.042857143	-0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.209	231	0	0	NA	6qG1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.898482445	sgMsh2	cell line
chr7	25630422	25630422	G	T	ENSMUST00000205808.1	5	ENSMUSG00000060376	missense	P/H	92	Bckdha	ENSMUST00000205808.1:c.275C>A	ENSMUSP00000146018.1:p.Pro92His	H-2-Kb	9	10	5	RSWKHLSRL	RSWKPLSRL	NetMHCpan	40.3	284.5	7.06	35	0.2	90.509	379.431	4.192	202.73	43.85	284.5	40.3	474.3621186	146.9298381	571.8077009	137.1671136	M5_p20	-0.814285714	-0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.217	35	0	0	NA	7qA3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	0.932874117	sgMsh2	cell line
chr7	6461136	6461136	T	C	ENSMUST00000214301.2	5	ENSMUSG00000048620	missense	V/A	209	Olfr1336	ENSMUST00000214301.2:c.626T>C	ENSMUSP00000150162.1:p.Val209Ala	H-2-Kb	9	10	2	IAILWGSLL	IVILWGSLL	NetMHC	79.58	110.35	1.387	399	0.231	134.3	179.951	1.34	110.35	79.58	151.4	83.2	208.5018919	185.4001153	225.0349638	194.6480243	M5_p20	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	399	0	0	NA	7qA1	chr7-3489139-7297085	4	2	2	0.97	4.169990295	NA	1	0.975863708	sgMsh2	cell line
chr7	26611187	26611187	T	C	ENSMUST00000228367.1	NA	ENSMUSG00000091924	missense	M/V	298	Vmn1r185	ENSMUST00000228367.1:c.892A>G	ENSMUSP00000154816.1:p.Met298Val	H-2-Kb	9	3	9	VFMRSYSLV	VFMRSYSLM	NetMHC	86.79	66.95	0.771	218	0.312	195.423	101.978	0.522	66.95	86.79	103.7	265	100.2559138	171.4391481	132.8158787	219.4067579	M5_p20	0.357142857	0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.312	218	0	0	NA	7qA3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr6	141532679	141532679	A	G	ENSMUST00000032362.11	1	ENSMUSG00000030235	missense	K/R	56	Slco1c1	ENSMUST00000032362.11:c.167A>G	ENSMUSP00000032362.9:p.Lys56Arg	H-2-Kb	9	5	7	SFVYFARAL	SFVYFAKAL	NetMHC	90.76	210.98	2.325	135	0.067	303.576	377.92	1.245	210.98	90.76	211.2	119.5	544.6405843	487.6519891	802.1396792	782.0778752	M5_p20	1.228571429	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.089	135	0	0	NA	6qG2	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.382607357	sgMsh2	cell line
chr6	134451069	134451069	T	C	ENSMUST00000032322.14	1	ENSMUSG00000030201	missense	Y/C	1520	Lrp6	ENSMUST00000032322.14:c.4559A>G	ENSMUSP00000032322.8:p.Tyr1520Cys	H-2-Kb	9	11	1	CSYRHFAPP	YSYRHFAPP	SMM	43.965	47.985	1.091	117	0.179	101.949	75.581	0.741	74.91	111.8	101.8	153.6	47.9854973	43.96529586	76.25178243	92.09795777	M5_p20	-1.085714286	-0.385714286	TRUE	FALSE	TRUE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.173	117	0	0	NA	6qG1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.743719919	sgMsh2	cell line
chr7	10715340	10715340	GT	G	ENSMUST00000117413.8	1	ENSMUSG00000034087	FS	V/X	490	Nlrp4b	ENSMUST00000117413.8:c.1475del	ENSMUSP00000113095.1:p.Leu492TrpfsTer29	H-2-Kb	9	16	0	SSLVFYMKQ	NA	NetMHC	125.29	NA	NA	44	0.295	140.178	NA	NA	NA	125.29	NA	2072.5	NA	139.9941861	NA	140.3621462	M5_p20	0.571428571	1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.274	44	0	0	NA	7qA1	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr7	26611187	26611187	T	C	ENSMUST00000228367.1	NA	ENSMUSG00000091924	missense	M/V	298	Vmn1r185	ENSMUST00000228367.1:c.892A>G	ENSMUSP00000154816.1:p.Met298Val	H-2-Kb	9	6	6	RSYSLVSRF	RSYSLMSRF	NetMHCpan	141.6	108.4	0.766	218	0.312	189.696	134.173	0.707	111.27	145.45	108.4	141.6	157.0760603	233.9429705	198.2668013	302.8656361	M5_p20	0.485714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.312	218	0	0	NA	7qA3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr7	44860083	44860083	A	T	ENSMUST00000003044.13	1	ENSMUSG00000002963	missense	I/F	214	Pnkp	ENSMUST00000003044.13:c.640A>T	ENSMUSP00000003044.7:p.Ile214Phe	H-2-Kb	9	10	2	VFFTNQMGI	VIFTNQMGI	NetMHC	224.67	173.98	0.774	181	0.26	495.62	287.013	0.579	173.98	224.67	171	466.3	400.0460623	524.9404026	441.8247089	598.7561676	M5_p20	0.157142857	0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.284	181	0	0	NA	7qB3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr7	10715340	10715340	GT	G	ENSMUST00000117413.8	1	ENSMUSG00000034087	FS	V/X	490	Nlrp4b	ENSMUST00000117413.8:c.1475del	ENSMUSP00000113095.1:p.Leu492TrpfsTer29	H-2-Kb	9	10	4	WVFWAVSSL	NA	NetMHCpan	310.4	NA	NA	44	0.295	472.568	NA	NA	NA	324.11	NA	310.4	NA	621.0263106	NA	638.631006	M5_p20	1.442857143	1.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.274	44	0	0	NA	7qA1	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr7	6996630	6996630	G	T	ENSMUST00000086248.6	1	ENSMUSG00000070837	missense	K/N	84	Aurkc	ENSMUST00000086248.6:c.252G>T	ENSMUSP00000083426.5:p.Lys84Asn	H-2-Kb	9	10	2	LNVLFKSEI	LKVLFKSEI	NetMHCpan	277.1	6430	23.205	225	0.227	444.923	3344.176	7.516	3855.33	333.8	6430	277.1	2612.823058	556.045077	2833.022345	641.5787927	M5_p20	1.014285714	1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.249	225	0	0	NA	7qA1	chr7-3489139-7297085	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr6	134484391	134484391	T	G	ENSMUST00000032322.14	1	ENSMUSG00000030201	missense	E/A	701	Lrp6	ENSMUST00000032322.14:c.2102A>C	ENSMUSP00000032322.8:p.Glu701Ala	H-2-Kb	9	4	8	SALEHVVAF	SALEHVVEF	NetMHC	346.5	552.55	1.595	204	0.147	444.167	549.223	1.237	552.55	346.5	572.2	399.4	545.8961105	515.3591605	539.8212792	488.9337312	M5_p20	1.442857143	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.154	204	0	0	NA	6qG1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.662039696	sgMsh2	cell line
chr6	132803231	132803231	A	G	ENSMUST00000068302.3	NA	ENSMUSG00000058349	missense	T/A	111	Tas2r117	ENSMUST00000068302.3:c.331A>G	ENSMUSP00000069768.3:p.Thr111Ala	H-2-Kb	9	10	2	LAVLYFLKI	LTVLYFLKI	NetMHCpan	201.9	258.3	1.279	202	0.153	270.37	362.769	1.342	474.79	365.12	258.3	201.9	437.6329367	317.7678825	287.9055255	222.9718309	M5_p20	1.985714286	2.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.178	202	0	0	NA	6qG1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.765214714	sgMsh2	cell line
chr7	45897436	45897436	C	T	ENSMUST00000069772.15	1	ENSMUSG00000002781	missense	L/F	9	Tmem143	ENSMUST00000069772.15:c.25C>T	ENSMUSP00000070405.7:p.Leu9Phe	H-2-Kb	9	1	9	MTVARWLRF	MTVARWLRL	SMMPMBEC	346.937	200.563	0.578	56	0.286	447.198	172.436	0.386	144.31	476.98	90.6	447.6	264.9171047	446.7967444	200.5626226	346.9365057	M5_p20	0.385714286	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.266	56	0	0	NA	7qB3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr6	132711489	132711489	A	G	ENSMUST00000105077.1	NA	ENSMUSG00000078280	missense	F/S	147	Tas2r122	ENSMUST00000105077.1:c.440T>C	ENSMUSP00000100699.1:p.Phe147Ser	H-2-Kb	9	4	8	YFILFLISM	YFILFLIFM	SMM	276.764	370.775	1.34	192	0.188	446.557	765.882	1.715	1013.86	510.95	6463	3337.4	370.7746213	276.7642557	517.9048762	382.1641989	M5_p20	2.928571429	3.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.199	192	0	0	NA	6qG1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.855492854	sgMsh2	cell line
chr7	108845947	108845947	G	T	ENSMUST00000216092.1	5	ENSMUSG00000062434	missense	P/H	21	Olfr516	ENSMUST00000216092.1:c.62C>A	ENSMUSP00000149160.1:p.Pro21His	H-2-Db	9	5	7	LGFSNYHEL	LGFSNYPEL	NetMHCpan	50.7	117	2.308	215	0.288	175.701	268.441	1.528	393.62	116.13	117	50.7	288.8151695	242.4487783	248.0675743	235.2718676	M5_p20	-0.814285714	-0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.293	215	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr7	81101095	81101095	T	C	ENSMUST00000107348.1	1	ENSMUSG00000038763	missense	W/R	1538	Alpk3	ENSMUST00000107348.1:c.4612T>C	ENSMUSP00000102971.1:p.Trp1538Arg	H-2-Db	9	9	3	YQRTNGSFL	YQWTNGSFL	NetMHCpan	123.2	26.5	0.215	79	0.253	312.704	56.356	0.18	8.22	131.53	26.5	123.2	91.33137583	493.878363	86.21245256	572.2291797	M5_p20	-0.471428571	-0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.254	79	0	0	NA	7qD3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr7	66784798	66784798	T	C	ENSMUST00000066475.10	1	ENSMUSG00000030510	missense	W/R	216	Cers3	ENSMUST00000066475.10:c.646T>C	ENSMUSP00000069238.8:p.Trp216Arg	H-2-Kb	8	8	4	SQYRYYIL	SQYWYYIL	NetMHC	4.27	6.01	1.407	465	0.198	11.074	15.356	1.387	6.01	4.27	10.4	7.4	20.3114066	14.74823333	31.82291802	20.73671696	M5_p20	-0.514285714	-0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	465	0	0	NA	7qC	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	0.859791813	sgMsh2	cell line
chr7	99667112	99667112	T	C	ENSMUST00000107088.7	1	ENSMUSG00000030737	missense	T/A	404	Slco2b1	ENSMUST00000107088.7:c.1210A>G	ENSMUSP00000102703.1:p.Thr404Ala	H-2-Kb	8	10	2	IAASFANM	ITASFANM	NetMHC	5.86	5.92	1.01	76	0.237	17.404	13.8	0.793	5.92	5.86	10.9	9	16.70090478	25.80714726	19.75786438	31.24208431	M5_p20	0.828571429	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.265	76	0	0	NA	7qE1	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr7	108066532	108066532	T	C	ENSMUST00000071658.2	NA	ENSMUSG00000063120	missense	M/V	89	Olfr480	ENSMUST00000071658.2:c.265A>G	ENSMUSP00000071583.2:p.Met89Val	H-2-Kb	8	11	1	VYLFLSHL	MYLFLSHL	NetMHCpan	13.1	28.9	2.206	272	0.279	134.327	287.934	2.144	52.58	23.33	28.9	13.1	523.2870654	245.323979	556.8522772	262.8693795	M5_p20	1.271428571	1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.282	272	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr7	108031681	108031681	A	G	ENSMUST00000210173.2	3	ENSMUSG00000094426	missense	Y/H	221	Olfr478	ENSMUST00000210173.2:c.661T>C	ENSMUSP00000147713.1:p.Tyr221His	H-2-Kb	8	9	3	ISHIYILI	ISYIYILI	NetMHCpan	32.1	7	0.218	655	0.214	78.835	8.59	0.109	4.24	53.98	7	32.1	10.56185011	124.3769779	10.17981768	103.6907462	M5_p20	1.714285714	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.215	655	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	0.924276199	sgMsh2	cell line
chr7	102927910	102927910	T	A	ENSMUST00000215782.2	5	ENSMUSG00000073963	missense	I/N	94	Olfr572	ENSMUST00000215782.2:c.281T>A	ENSMUSP00000149174.1:p.Ile94Asn	H-2-Kb	8	6	6	FNYKFNTF	FNYKFITF	NetMHCpan	50.8	48.2	0.949	228	0.189	130.321	119.91	0.92	86.45	77.52	48.2	50.8	158.0301673	183.1217795	153.3698525	187.8192059	M5_p20	-1.042857143	-1.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.191	228	0	0	NA	7qE3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	0.821101182	sgMsh2	cell line
chr7	127905762	127905762	T	C	ENSMUST00000071056.13	1	ENSMUSG00000030802	missense	I/T	130	Bckdk	ENSMUST00000071056.13:c.389T>C	ENSMUSP00000070345.7:p.Ile130Thr	H-2-Kb	8	10	2	YTRAFQKL	YIRAFQKL	NetMHCpan	121.7	137.9	1.133	268	0.209	139.122	142.352	1.023	95.73	131.44	137.9	121.7	146.8047136	146.8047136	188.2521739	180.6092545	M5_p20	-0.6	-0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.204	268	0	0	NA	7qF3	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	0.87698765	sgMsh2	cell line
chr7	84916076	84916076	T	C	ENSMUST00000214501.2	5	ENSMUSG00000070459	missense	L/S	99	Olfr290	ENSMUST00000214501.2:c.296T>C	ENSMUSP00000149411.1:p.Leu99Ser	H-2-Kb	8	10	2	ASQLYFLV	ALQLYFLV	NetMHC	147.53	3327.57	22.555	535	0.202	175.029	2029.316	11.594	3327.57	147.53	2934.7	203.6	1123.931906	163.9607892	1108.510982	186.0972691	M5_p20	1.285714286	1.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.203	535	0	0	NA	7qD3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	0.872688691	sgMsh2	cell line
chr7	105555462	105555462	AC	A	ENSMUST00000046983.9	1	ENSMUSG00000037049	FS	P/X	183	Smpd1	ENSMUST00000046983.9:c.551del	ENSMUSP00000042187.8:p.Pro184GlnfsTer72	H-2-Kb	8	47	0	VQIHFAAA	NA	SMMPMBEC	150.918	NA	NA	144	0.201	175.233	NA	NA	NA	165.65	NA	488.7	NA	184.8161845	NA	150.9176382	M5_p20	0.857142857	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.211	144	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	0.907080363	sgMsh2	cell line
chr7	108171874	108171874	G	A	ENSMUST00000072035.3	NA	ENSMUSG00000096068	missense	P/L	290	Olfr486	ENSMUST00000072035.3:c.869C>T	ENSMUSP00000071918.3:p.Pro290Leu	H-2-Kb	8	5	7	VIPVLNLL	VIPVLNPL	NetMHC	173.73	43.03	0.248	330	0.197	354.134	130.801	0.369	43.03	173.73	146.4	422.9	115.8083836	306.71852	145.794117	401.5503419	M5_p20	2.142857143	2.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.206	330	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	0.885585568	sgMsh2	cell line
chr7	108031681	108031681	A	G	ENSMUST00000210173.2	3	ENSMUSG00000094426	missense	Y/H	221	Olfr478	ENSMUST00000210173.2:c.661T>C	ENSMUSP00000147713.1:p.Tyr221His	H-2-Kb	8	7	5	IAISHIYI	IAISYIYI	NetMHCpan	132.8	22.8	0.172	655	0.214	294.664	57.982	0.197	28.92	212.85	22.8	132.8	99.25216755	384.3616066	87.04423244	376.4783444	M5_p20	1.428571429	1.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.215	655	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	0.924276199	sgMsh2	cell line
chr7	91940074	91940074	T	A	ENSMUST00000107196.9	1	ENSMUSG00000052572	missense	I/N	227	Dlg2	ENSMUST00000107196.9:c.680T>A	ENSMUSP00000102814.2:p.Ile227Asn	H-2-Kb	8	5	7	SIYVTKNI	SIYVTKII	NetMHC	242.01	2437.57	10.072	208	0.312	286.831	2390.198	8.333	2437.57	242.01	1637.8	259.8	2481.646968	364.5356443	2342.825811	313.8629122	M5_p20	0.542857143	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.31	208	0	0	NA	7qE1	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr7	105555462	105555462	AC	A	ENSMUST00000046983.9	1	ENSMUSG00000037049	FS	P/X	183	Smpd1	ENSMUST00000046983.9:c.551del	ENSMUSP00000042187.8:p.Pro184GlnfsTer72	H-2-Kb	8	38	0	STWRAQTL	NA	NetMHCpan	140.5	NA	NA	144	0.201	249.349	NA	NA	NA	259.51	NA	140.5	NA	239.1883374	NA	262.2647967	M5_p20	-0.671428571	-0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.211	144	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	0.907080363	sgMsh2	cell line
chr7	108714066	108714066	C	A	ENSMUST00000074730.3	NA	ENSMUSG00000056946	missense	L/M	238	Olfr512	ENSMUST00000074730.3:c.712C>A	ENSMUSP00000074291.4:p.Leu238Met	H-2-Kb	8	6	6	ILFTIMRM	ILFTILRM	NetMHCpan	74.1	112.6	1.52	405	0.24	290.124	605.685	2.088	729.71	264.21	112.6	74.1	758.1235717	462.1042896	481.6593553	316.0385059	M5_p20	1.385714286	1.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.234	405	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr7	100503182	100503182	A	G	ENSMUST00000207405.1	1	ENSMUSG00000030708	missense	M/T	309	Dnajb13	ENSMUST00000207405.1:c.926T>C	ENSMUSP00000147019.1:p.Met309Thr	H-2-Kb	8	13	2	QTLRQALL	QMLRQALL	SMM	286.906	520.883	1.816	66	0.273	461.754	706.441	1.53	350.19	416.82	892	1408.6	520.8827797	286.906244	911.4650073	506.6872779	M5_p20	0.642857143	0.642857143	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.285	66	0	0	NA	7qE2	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr7	137453497	137453497	CT	C	ENSMUST00000064404.7	1	ENSMUSG00000031068	FS	F/X	123	Glrx3	ENSMUST00000064404.7:c.369del	ENSMUSP00000066621.6:p.Pro124LeufsTer16	H-2-Kb	8	7	6	SSGAFLLV	SSGAFPPS	SMM	298.36	369.607	1.239	102	0.216	366.649	2823.885	7.702	5143.41	426.58	5873.8	646.1	369.6068402	298.3595888	504.3592613	306.71852	M5_p20	2.171428571	2.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.234	102	0	0	NA	7qF4	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr7	108066532	108066532	T	C	ENSMUST00000071658.2	NA	ENSMUSG00000063120	missense	M/V	89	Olfr480	ENSMUST00000071658.2:c.265A>G	ENSMUSP00000071583.2:p.Met89Val	H-2-Kb	8	8	4	HTPVYLFL	HTPMYLFL	NetMHCpan	245.7	219.6	0.894	272	0.279	262.002	292.515	1.116	407.26	463.94	219.6	245.7	316.0385059	266.5262568	268.9923939	257.4779247	M5_p20	1.571428571	1.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.282	272	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr7	86811337	86811337	G	A	ENSMUST00000164996.1	5	ENSMUSG00000090949	missense	V/I	624	Vmn2r77	ENSMUST00000164996.1:c.1870G>A	ENSMUSP00000129540.1:p.Val624Ile	H-2-Kb	8	6	6	ETLSYILL	ETLSYVLL	SMMPMBEC	299.737	258.071	0.861	415	0.287	438.719	380.319	0.867	864.89	988.22	444.6	532.5	316.0385059	344.9371732	258.0714726	299.7367541	M5_p20	1.871428571	1.871428571	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.288	415	0	0	NA	7qD3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr7	86811337	86811337	G	A	ENSMUST00000164996.1	5	ENSMUSG00000090949	missense	V/I	624	Vmn2r77	ENSMUST00000164996.1:c.1870G>A	ENSMUSP00000129540.1:p.Val624Ile	H-2-Kb	9	8	4	LSYILLTSL	LSYVLLTSL	NetMHCpan	26.5	23.3	0.879	415	0.287	55.636	50.423	0.906	24.09	28.24	23.3	26.5	76.75558746	92.92017092	84.382036	83.03286055	M5_p20	1.871428571	1.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.288	415	0	0	NA	7qD3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr7	108066532	108066532	T	C	ENSMUST00000071658.2	NA	ENSMUSG00000063120	missense	M/V	89	Olfr480	ENSMUST00000071658.2:c.265A>G	ENSMUSP00000071583.2:p.Met89Val	H-2-Kb	9	10	2	PVYLFLSHL	PMYLFLSHL	SMM	27.74	12.797	0.461	272	0.279	31.825	25.891	0.814	28.38	30.85	39.4	32.8	12.79705392	27.74022632	23.40183969	47.56089297	M5_p20	1.271428571	1.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.282	272	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr7	99667112	99667112	T	C	ENSMUST00000107088.7	1	ENSMUSG00000030737	missense	T/A	404	Slco2b1	ENSMUST00000107088.7:c.1210A>G	ENSMUSP00000102703.1:p.Thr404Ala	H-2-Kb	9	10	2	IAASFANML	ITASFANML	NetMHC	49.5	59.95	1.211	76	0.237	106.089	142.925	1.347	59.95	49.5	72	56.9	213.850367	155.2780255	358.3026333	277.4917016	M5_p20	1.114285714	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.265	76	0	0	NA	7qE1	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr7	99667112	99667112	T	C	ENSMUST00000107088.7	1	ENSMUSG00000030737	missense	T/A	404	Slco2b1	ENSMUST00000107088.7:c.1210A>G	ENSMUSP00000102703.1:p.Thr404Ala	H-2-Kb	9	9	3	SIAASFANM	SITASFANM	NetMHC	52.64	67.03	1.273	76	0.237	261.476	391.398	1.497	67.03	52.64	142.9	83.3	639.8968908	439.6529586	738.3291242	556.2243536	M5_p20	0.828571429	1.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.265	76	0	0	NA	7qE1	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr7	84916076	84916076	T	C	ENSMUST00000214501.2	5	ENSMUSG00000070459	missense	L/S	99	Olfr290	ENSMUST00000214501.2:c.296T>C	ENSMUSP00000149411.1:p.Leu99Ser	H-2-Kb	9	11	1	SQLYFLVAL	LQLYFLVAL	NetMHC	66.9	251.74	3.763	535	0.202	144.691	319.716	2.21	251.74	66.9	421.8	80.4	313.4079437	208.9825384	326.0243217	254.2435828	M5_p20	2.7	2.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.203	535	0	0	NA	7qD3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	0.872688691	sgMsh2	cell line
chr7	108845947	108845947	G	T	ENSMUST00000216092.1	5	ENSMUSG00000062434	missense	P/H	21	Olfr516	ENSMUST00000216092.1:c.62C>A	ENSMUSP00000149160.1:p.Pro21His	H-2-Kb	9	5	7	LGFSNYHEL	LGFSNYPEL	NetMHCpan	53.7	43.5	0.81	215	0.288	137.858	83.806	0.608	46.8	88.17	43.5	53.7	120.8119794	187.5469475	141.0100284	219.4067579	M5_p20	-0.814285714	-0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.293	215	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr7	86230157	86230157	G	T	ENSMUST00000165771.1	5	ENSMUSG00000091239	missense	L/I	312	Vmn2r76	ENSMUST00000165771.1:c.934C>A	ENSMUSP00000127309.1:p.Leu312Ile	H-2-Kb	9	11	1	IFNSFHGTL	LFNSFHGTL	NetMHC	90.6	323.06	3.566	143	0.329	213.074	517.132	2.427	323.06	90.6	536.4	171.4	497.86317	254.7475407	565.2622723	289.2344371	M5_p20	-0.285714286	0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.344	143	0	0	NA	7qD3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	2	1	sgMsh2	cell line
chr7	103506578	103506578	C	T	ENSMUST00000217627.1	5	ENSMUSG00000045584	missense	D/N	123	Olfr610	ENSMUST00000217627.1:c.367G>A	ENSMUSP00000150921.1:p.Asp123Asn	H-2-Kb	9	8	4	MAFNRCVAI	MAFDRCVAI	NetMHCpan	110.3	206.1	1.869	129	0.217	173.167	220.003	1.27	220.6	147.61	206.1	110.3	295.876178	284.5181656	219.4067579	198.7238535	M5_p20	1.114285714	1.114285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	129	0	0	NA	7qE3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	0.971564749	sgMsh2	cell line
chr7	108031681	108031681	A	G	ENSMUST00000210173.2	3	ENSMUSG00000094426	missense	Y/H	221	Olfr478	ENSMUST00000210173.2:c.661T>C	ENSMUSP00000147713.1:p.Tyr221His	H-2-Kb	9	7	5	IAISHIYIL	IAISYIYIL	NetMHCpan	89.6	39.6	0.442	655	0.214	172.099	112.772	0.655	92.77	178.58	39.6	89.6	132.7730709	165.6189397	178.3405083	224.0010221	M5_p20	1.714285714	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.215	655	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	0.924276199	sgMsh2	cell line
chr7	66784798	66784798	T	C	ENSMUST00000066475.10	1	ENSMUSG00000030510	missense	W/R	216	Cers3	ENSMUST00000066475.10:c.646T>C	ENSMUSP00000069238.8:p.Trp216Arg	H-2-Kb	9	8	4	SQYRYYILE	SQYWYYILE	SMM	92.493	70.325	0.76	465	0.198	160.502	195.895	1.221	314.3	217.43	396.3	364.7	70.32504197	92.49324152	77.49077422	103.5738214	M5_p20	-0.514285714	-0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	465	0	0	NA	7qC	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	0.859791813	sgMsh2	cell line
chr7	138229856	138229856	A	G	ENSMUST00000160436.1	5	ENSMUSG00000091002	missense	M/T	464	Tcerg1l	ENSMUST00000160436.1:c.1391T>C	ENSMUSP00000124476.1:p.Met464Thr	H-2-Kb	9	5	7	VTHFRDTLL	VTHFRDMLL	SMMPMBEC	144.295	160.048	1.109	94	0.277	193.254	171.84	0.889	177.68	224.66	340.6	468.5	166.0007308	161.8489924	160.0479073	144.2945739	M5_p20	-0.214285714	-0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.259	94	0	0	NA	7qF4	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr7	55933103	55933103	G	A	ENSMUST00000119201.7	1	ENSMUSG00000030452	missense	A/V	298	Nipa2	ENSMUST00000119201.7:c.893C>T	ENSMUSP00000114020.1:p.Ala298Val	H-2-Kb	9	3	9	IVGIFLLHV	IVGIFLLHA	SMMPMBEC	293.934	1014.495	3.451	154	0.214	319.481	1799.346	5.632	2393.35	336.89	4122.3	831.1	1205.341196	302.0716724	1014.495208	293.9341186	M5_p20	2.214285714	3.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.208	154	0	0	NA	7qB5	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	0.894183486	sgMsh2	cell line
chr7	108317521	108317521	T	C	ENSMUST00000214605.1	2	ENSMUSG00000094612	missense	V/A	209	Olfr491	ENSMUST00000214605.1:c.626T>C	ENSMUSP00000150694.1:p.Val209Ala	H-2-Kb	9	10	2	VATVFVISV	VVTVFVISV	NetMHC	342.27	467.62	1.366	596	0.23	395.11	553.012	1.4	467.62	342.27	735.6	356.6	487.6519891	433.6206938	618.3722614	534.872168	M5_p20	2.628571429	3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.229	596	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	0.984461626	sgMsh2	cell line
chr7	137453497	137453497	CT	C	ENSMUST00000064404.7	1	ENSMUSG00000031068	FS	F/X	123	Glrx3	ENSMUST00000064404.7:c.369del	ENSMUSP00000066621.6:p.Pro124LeufsTer16	H-2-Kb	9	7	6	SSGAFLLVL	SSGAFPPST	SMM	296.558	2466.664	8.318	102	0.216	319.799	4709.883	14.728	6900.64	377.3	8490.6	340.2	2466.664026	296.558243	2519.126636	299.3987618	M5_p20	2.828571429	2.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.234	102	0	0	NA	7qF4	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr7	81348426	81348426	T	A	ENSMUST00000178892.2	1	ENSMUSG00000025586	missense	Y/F	535	Cpeb1	ENSMUST00000178892.2:c.1604A>T	ENSMUSP00000137079.1:p.Tyr535Phe	H-2-Kb	9	7	5	VCFKFFCRS	VCFKYFCRS	SMM	96.407	118.607	1.23	63	0.206	202.811	222.153	1.095	822.05	618.66	325.7	298.9	118.6069123	96.40731774	113.5664369	106.721028	M5_p20	0.242857143	1.957142857	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.225	63	0	0	NA	7qD3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	0.96726579	sgMsh2	cell line
chr7	104003305	104003305	G	A	ENSMUST00000209757.2	NA	ENSMUSG00000094063	missense	G/D	16	Olfr638	ENSMUST00000209757.2:c.47G>A	ENSMUSP00000148160.2:p.Gly16Asp	H-2-Kb	9	9	3	THDPFYFIL	THGPFYFIL	SMM	390.041	253.577	0.65	695	0.255	444.154	271.15	0.61	601.06	1145.75	260.3	447.5	253.577082	390.0407654	282.000579	440.8085403	M5_p20	1.071428571	1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.251	695	0	0	NA	7qE3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr8	13576361	13576361	T	C	ENSMUST00000117551.3	1	ENSMUSG00000031453	missense	M/V	741	Rasa3	ENSMUST00000117551.3:c.2221A>G	ENSMUSP00000112998.2:p.Met741Val	H-2-Db	9	4	8	YSLFNLYVG	YSLFNLYMG	NetMHC	87.93	363.82	4.138	176	0.227	182.548	418.279	2.291	363.82	87.93	556	201.2	472.737441	298.2771604	313.0184957	163.896621	M5_p20	1.342857143	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	176	0	0	NA	8qA1.1	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	0.971564749	sgMsh2	cell line
chr8	109551631	109551631	C	T	ENSMUST00000042601.8	1	ENSMUSG00000037993	missense	D/N	1138	Dhx38	ENSMUST00000042601.8:c.3412G>A	ENSMUSP00000047865.7:p.Asp1138Asn	H-2-Db	9	7	5	VTAVNGEWL	VTAVDGEWL	NetMHC	127.35	8821.39	69.269	173	0.254	384.136	9938.338	25.872	8821.39	127.35	6722.3	173.2	12723.89276	660.1156057	11055.28645	595.0726634	M5_p20	0.214285714	0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.273	173	0	0	NA	8qD3	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr8	68282404	68282404	CA	C	ENSMUST00000066594.3	1	ENSMUSG00000053886	FS	P/X	58	Sh2d4a	ENSMUST00000066594.3:c.180del	ENSMUSP00000070825.3:p.Glu61ArgfsTer20	H-2-Db	9	18	0	LSIGSWAPI	NA	NetMHCpan	310.2	NA	NA	91	0.297	355.655	NA	NA	NA	788.99	NA	310.2	NA	393.2058767	NA	318.1046371	M5_p20	1.014285714	1.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.311	91	0	0	NA	8qB3.3	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr8	113639733	113639733	C	A	ENSMUST00000035777.9	1	ENSMUSG00000078908	missense	L/M	454	Mon1b	ENSMUST00000035777.9:c.1360C>A	ENSMUSP00000045089.8:p.Leu454Met	H-2-Kb	8	11	1	MSDLYHRL	LSDLYHRL	SMM	37.822	89.689	2.371	188	0.234	62.731	139.46	2.223	189.23	87.64	275.9	149.4	89.68916897	37.82160895	74.25744462	37.82160895	M5_p20	-0.814285714	-0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.237	188	0	0	NA	8qE1	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr8	56110553	56110553	A	G	ENSMUST00000000275.8	1	ENSMUSG00000038257	missense	K/R	361	Glra3	ENSMUST00000000275.8:c.1082A>G	ENSMUSP00000000275.7:p.Lys361Arg	H-2-Kb	8	6	6	VSRQHREL	VSRQHKEL	SMM	69.621	143.794	2.065	282	0.238	100.959	250.036	2.477	322.76	105.37	1502.7	872.9	143.7937467	69.6209588	177.3127641	96.54727043	M5_p20	-2.314285714	-2.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.236	282	0	0	NA	8qB2	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr8	117758761	117758761	C	CA	ENSMUST00000034304.8	1	ENSMUSG00000031844	FS	P/PX	321	Hsd17b2	ENSMUST00000034304.8:c.962_963insA	ENSMUSP00000034304.7:p.Val322CysfsTer40	H-2-Kb	8	38	0	VGLLSSLL	NA	NetMHC	159.51	NA	NA	192	0.167	207.182	NA	NA	NA	159.51	NA	179	NA	235.3639803	NA	288.8949831	M5_p20	1.885714286	1.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.19	192	0	0	NA	8qE1	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	0.816802223	sgMsh2	cell line
chr8	105878842	105878842	T	C	ENSMUST00000008594.8	1	ENSMUSG00000008450	missense	F/S	103	Nutf2	ENSMUST00000008594.8:c.308T>C	ENSMUSP00000008594.7:p.Phe103Ser	H-2-Kb	8	5	7	MGFHQMSL	MGFHQMFL	NetMHCpan	61.8	73.9	1.196	211	0.256	150.906	134.413	0.891	345.7	271.66	73.9	61.8	105.6185011	124.0909187	163.2074578	177.7215122	M5_p20	0.085714286	0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.258	211	0	0	NA	8qD3	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr8	83725234	83725234	A	G	ENSMUST00000075843.12	1	ENSMUSG00000002885	missense	M/T	563	Adgre5	ENSMUST00000075843.12:c.1688T>C	ENSMUSP00000075240.6:p.Met563Thr	H-2-Kb	8	7	5	SSRTTVHL	SSRTMVHL	SMMPMBEC	310.27	134.196	0.433	210	0.214	344.132	130.589	0.379	73.79	367.09	280.6	1261.9	126.9813676	321.1737185	134.1961326	310.2701531	M5_p20	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.244	210	0	0	NA	8qC2	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr8	15921821	15921821	T	A	ENSMUST00000082104.6	1	ENSMUSG00000060924	missense	Y/F	3003	Csmd1	ENSMUST00000082104.6:c.9008A>T	ENSMUSP00000080751.6:p.Tyr3003Phe	H-2-Kb	8	7	5	SSVIFACW	SSVIYACW	SMM	167.78	205.94	1.227	87	0.23	328.887	422.333	1.284	530.08	401.48	2390.1	2043.8	205.9396641	167.7799266	314.5864409	256.2949211	M5_p20	2.014285714	2.028571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.254	87	0	0	NA	8qA1.1	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr8	117758761	117758761	C	CA	ENSMUST00000034304.8	1	ENSMUSG00000031844	FS	P/PX	321	Hsd17b2	ENSMUST00000034304.8:c.962_963insA	ENSMUSP00000034304.7:p.Val322CysfsTer40	H-2-Kb	8	42	0	SSLLPHQL	NA	SMM	231.068	NA	NA	192	0.167	354.972	NA	NA	NA	439.71	NA	595	NA	231.0681036	NA	270.2340064	M5_p20	0.328571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.19	192	0	0	NA	8qE1	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	0.816802223	sgMsh2	cell line
chr8	94870519	94870519	A	G	ENSMUST00000211939.1	2	ENSMUSG00000031783	missense	Q/R	276	Polr2c	ENSMUST00000211939.1:c.827A>G	ENSMUSP00000148830.1:p.Gln276Arg	H-2-Kb	8	8	4	LTLRSLPL	LTLQSLPL	NetMHCpan	327.6	685.7	2.093	90	0.189	335.545	550.203	1.64	950.43	499.98	685.7	327.6	394.2212222	333.2268594	414.7056956	337.8625068	M5_p20	0.542857143	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.182	90	0	0	NA	8qC5	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	0.78241055	sgMsh2	cell line
chr8	67960592	67960592	G	A	ENSMUST00000098696.9	1	ENSMUSG00000030465	missense	P/S	429	Psd3	ENSMUST00000098696.9:c.1285C>T	ENSMUSP00000096293.3:p.Pro429Ser	H-2-Kb	9	4	8	SYFSFEMSL	SYFSFEMPL	NetMHCpan	24.5	18.6	0.759	206	0.296	42.795	25.409	0.594	18.6	29.47	18.6	24.5	32.21884741	56.11900987	57.18077009	97.77999259	M5_p20	0.885714286	0.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.291	206	0	0	NA	8qB3.2	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr8	109551631	109551631	C	T	ENSMUST00000042601.8	1	ENSMUSG00000037993	missense	D/N	1138	Dhx38	ENSMUST00000042601.8:c.3412G>A	ENSMUSP00000047865.7:p.Asp1138Asn	H-2-Kb	9	10	2	VNGEWLAEL	VDGEWLAEL	NetMHC	116.53	3630.39	31.154	173	0.254	130.917	2132.941	16.292	3630.39	116.53	5738.1	292.5	635.4918716	125.9244318	562.6651281	135.909558	M5_p20	0.157142857	0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.273	173	0	0	NA	8qD3	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr8	114230323	114230323	TA	T	ENSMUST00000049509.6	1	ENSMUSG00000046844	FS	V/X	115	Vat1l	ENSMUST00000049509.6:c.348del	ENSMUSP00000053431.6:p.Gly117AspfsTer35	H-2-Kb	9	19	0	VSWHLSTTM	NA	NetMHCpan	114.3	NA	NA	192	0.208	170.81	NA	NA	NA	135.03	NA	114.3	NA	206.5903351	NA	228.165512	M5_p20	-0.085714286	0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.212	192	0	0	NA	8qE1	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	0.911379322	sgMsh2	cell line
chr8	105878842	105878842	T	C	ENSMUST00000008594.8	1	ENSMUSG00000008450	missense	F/S	103	Nutf2	ENSMUST00000008594.8:c.308T>C	ENSMUSP00000008594.7:p.Phe103Ser	H-2-Kb	9	4	8	IMGFHQMSL	IMGFHQMFL	SMMPMBEC	166.437	225.554	1.355	211	0.256	175.497	253.816	1.446	305.48	177.57	275.3	221.2	232.3325184	173.4243199	225.553723	166.4370463	M5_p20	0.085714286	0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.258	211	0	0	NA	8qD3	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr8	105878842	105878842	T	C	ENSMUST00000008594.8	1	ENSMUSG00000008450	missense	F/S	103	Nutf2	ENSMUST00000008594.8:c.308T>C	ENSMUSP00000008594.7:p.Phe103Ser	H-2-Kb	9	5	7	MGFHQMSLL	MGFHQMFLL	NetMHCpan	61.9	85	1.373	211	0.256	289.966	372.137	1.283	284.96	204	85	61.9	459.3143352	375.9326101	492.3228579	387.4806325	M5_p20	0.685714286	0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.258	211	0	0	NA	8qD3	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr8	68282404	68282404	CA	C	ENSMUST00000066594.3	1	ENSMUSG00000053886	FS	P/X	58	Sh2d4a	ENSMUST00000066594.3:c.180del	ENSMUSP00000070825.3:p.Glu61ArgfsTer20	H-2-Kb	9	18	0	LSIGSWAPI	NA	NetMHC	259.46	NA	NA	91	0.297	318.801	NA	NA	NA	259.46	NA	279.3	NA	480.961153	NA	358.3026333	M5_p20	1.014285714	1.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.311	91	0	0	NA	8qB3.3	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr8	86019109	86019109	C	T	ENSMUST00000053771.13	1	ENSMUSG00000036879	missense	H/Y	644	Phkb	ENSMUST00000053771.13:c.1930C>T	ENSMUSP00000050788.7:p.His644Tyr	H-2-Kb	9	10	2	VYVDRLQTL	VHVDRLQTL	SMM	212.868	295.196	1.387	209	0.263	274.298	427.078	1.557	558.96	333.69	690.3	490.7	295.1956816	212.8678139	283.9553136	214.9067221	M5_p20	-0.057142857	-0.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.279	209	0	0	NA	8qC3	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr8	56110553	56110553	A	G	ENSMUST00000000275.8	1	ENSMUSG00000038257	missense	K/R	361	Glra3	ENSMUST00000000275.8:c.1082A>G	ENSMUSP00000000275.7:p.Lys361Arg	H-2-Kb	9	6	6	VSRQHRELL	VSRQHKELL	SMM	223.414	253.577	1.135	282	0.238	294.719	447.137	1.517	629.88	360.22	1230.8	842.1	253.577082	223.4138023	264.3930288	229.2186762	M5_p20	-1.657142857	-1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.236	282	0	0	NA	8qB2	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr8	105178615	105178615	A	T	ENSMUST00000052209.8	1	ENSMUSG00000031885	missense	N/I	63	Cbfb	ENSMUST00000052209.8:c.188A>T	ENSMUSP00000059382.2:p.Asn63Ile	H-2-Kb	9	3	9	IAFVATGTI	IAFVATGTN	NetMHCpan	147.4	7924.2	53.76	146	0.274	476.809	5159.061	10.82	13674.64	401.4	7924.2	147.4	2393.922023	552.2172896	1762.990613	624.0939895	M5_p20	1.642857143	2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.278	146	0	0	NA	8qD3	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr8	105844945	105844945	T	C	ENSMUST00000040776.5	1	ENSMUSG00000036672	missense	Y/C	492	Cenpt	ENSMUST00000040776.5:c.1475A>G	ENSMUSP00000038188.4:p.Tyr492Cys	H-2-Kb	9	6	6	VLVERCLPL	VLVERYLPL	NetMHCpan	261	40.5	0.155	269	0.204	361.302	65.12	0.18	58.42	420.13	40.5	261	87.72229799	411.2538721	71.82076058	311.3508101	M5_p20	0.671428571	1.5	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.209	269	0	0	NA	8qD3	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	0.898482445	sgMsh2	cell line
chr9	80136750	80136750	GA	G	ENSMUST00000165607.8	1	ENSMUSG00000034252	FS	K/X	888	Senp6	ENSMUST00000165607.8:c.2672del	ENSMUSP00000126777.2:p.Asn891IlefsTer44	H-2-Db	9	42	0	ASGMNASVL	NA	NetMHC	36.8	NA	NA	123	0.293	141.593	NA	NA	NA	36.8	NA	75.9	NA	216.0827011	NA	207.2860138	M5_p20	1	1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.294	123	0	0	NA	9qE1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr9	15332156	15332156	G	A	ENSMUST00000098979.10	5	ENSMUSG00000046111	missense	A/V	1668	Cep295	ENSMUST00000098979.10:c.5003C>T	ENSMUSP00000096578.3:p.Ala1668Val	H-2-Db	9	5	7	HAAPNDVVI	HAAPNDAVI	NetMHCpan	170.5	195	1.144	204	0.284	340.528	276.16	0.811	415.32	374.26	195	170.5	280.9441543	357.7832461	271.3751022	323.2734217	M5_p20	0.871428571	0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.278	204	0	0	NA	9qA2	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr9	44402403	44402403	G	A	ENSMUST00000213388.1	1	ENSMUSG00000032114	missense	V/I	409	Slc37a4	ENSMUST00000213388.1:c.1225G>A	ENSMUSP00000150843.1:p.Val409Ile	H-2-Kb	8	9	3	STIVFFLL	STVVFFLL	NetMHC	8.18	13.88	1.697	111	0.315	17.327	30.659	1.769	13.88	8.18	28.3	16.8	34.09887101	17.85418375	33.01718172	17.93659491	M5_p20	3.028571429	3.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.311	111	0	0	NA	9qA5.2	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr9	38116618	38116618	AT	A	ENSMUST00000217286.1	5	ENSMUSG00000096356	FS	I/X	274	Olfr889	ENSMUST00000217286.1:c.826del	ENSMUSP00000148913.1:p.Tyr276IlefsTer8	H-2-Kb	8	8	6	LSTIFIPL	LSTIFYTI	NetMHC	31.19	498.24	15.974	284	0.261	42.462	521.208	12.275	498.24	31.19	135.1	36.2	560.7121928	49.28786429	544.1767718	48.72367077	M5_p20	1.785714286	1.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.242	284	0	0	NA	9qA4	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr8	124028933	124028933	T	C	ENSMUST00000034457.8	1	ENSMUSG00000031976	missense	Y/H	460	Urb2	ENSMUST00000034457.8:c.1378T>C	ENSMUSP00000034457.8:p.Tyr460His	H-2-Kb	8	7	5	VFQTHAKL	VFQTYAKL	SMM	70.915	18.312	0.258	230	0.226	106.19	20.473	0.193	16.15	114.49	51	301.1	18.31217795	70.91530907	22.63288934	97.89037676	M5_p20	-0.414285714	-0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.235	230	0	0	NA	8qE2	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr9	38581310	38581310	A	G	ENSMUST00000217160.2	2	ENSMUSG00000111448	missense	E/G	11	Olfr912	ENSMUST00000217160.2:c.32A>G	ENSMUSP00000150014.1:p.Glu11Gly	H-2-Kb	8	10	2	TGFILLGL	TEFILLGL	NetMHCpan	76	2780.8	36.589	229	0.227	133.538	1694.286	12.688	3753.82	131.95	2780.8	76	607.7710368	137.6385219	576.4212727	135.1263357	M5_p20	2.557142857	2.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.232	229	0	0	NA	9qA5.1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	0.997358503	sgMsh2	cell line
chr9	45950101	45950101	A	G	ENSMUST00000114573.8	1	ENSMUSG00000034908	missense	V/A	245	Sidt2	ENSMUST00000114573.8:c.734T>C	ENSMUSP00000110220.2:p.Val245Ala	H-2-Kb	8	6	6	SNSFYAVV	SNSFYVVV	NetMHCpan	71.6	174.3	2.434	163	0.215	223.164	943.486	4.228	1073.42	164.01	174.3	71.6	816.0936526	282.3189304	1070.878008	371.3128679	M5_p20	1.057142857	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.26	163	0	0	NA	9qA5.2	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr9	39258136	39258136	A	C	ENSMUST00000076903.2	NA	ENSMUSG00000063380	missense	C/G	182	Olfr945	ENSMUST00000076903.2:c.544T>G	ENSMUSP00000076169.2:p.Cys182Gly	H-2-Kb	8	6	6	INHYFGDI	INHYFCDI	NetMHCpan	102	90.9	0.891	367	0.46	276.289	313.213	1.134	217.41	182.12	90.9	102	466.380088	456.8146256	409.0157201	370.458872	M5_p20	-0.657142857	-0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.454	367	0	0	NA	9qA5.1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	2	1	sgMsh2	cell line
chr9	38848204	38848204	C	T	ENSMUST00000217350.1	5	ENSMUSG00000062103	missense	A/V	30	Olfr924	ENSMUST00000217350.1:c.89C>T	ENSMUSP00000149849.1:p.Ala30Val	H-2-Kb	8	11	1	VIYVITVV	AIYVITVV	NetMHC	202.6	1252.59	6.183	309	0.252	217.935	913.276	4.191	1252.59	202.6	849.9	203.2	976.6523514	259.2626764	797.5170931	232.6697911	M5_p20	2.8	2.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.248	309	0	0	NA	9qA5.1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr9	39018999	39018999	G	T	ENSMUST00000214410.1	5	ENSMUSG00000058820	missense	L/I	181	Olfr146	ENSMUST00000214410.1:c.541C>A	ENSMUSP00000149294.1:p.Leu181Ile	H-2-Kb	8	4	8	INHYFCDI	INHYFCDL	NetMHCpan	90.9	29.4	0.323	223	0.152	313.213	50.321	0.161	26.98	217.41	29.4	90.9	71.90183929	466.380088	71.24263926	409.0157201	M5_p20	-0.242857143	-0.242857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.16	223	0	0	NA	9qA5.1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	0.687833451	sgMsh2	cell line
chr9	8649519	8649519	T	C	ENSMUST00000050433.7	1	ENSMUSG00000031997	missense	Y/H	577	Trpc6	ENSMUST00000050433.7:c.1729T>C	ENSMUSP00000057965.6:p.Tyr577His	H-2-Kb	8	10	2	KHYNLARI	KYYNLARI	NetMHC	258.76	241.12	0.932	115	0.33	285.591	427.9	1.498	241.12	258.76	443	509.9	462.1042896	286.906244	412.800296	284.2758718	M5_p20	-0.342857143	-0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.329	115	0	0	NA	9qA1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	2	1	sgMsh2	cell line
chr9	21309648	21309648	T	G	ENSMUST00000115433.10	1	ENSMUSG00000003309	missense	S/R	63	Ap1m2	ENSMUST00000115433.10:c.187A>C	ENSMUSP00000111093.3:p.Ser63Arg	H-2-Kb	8	6	6	LWIKHRNL	LWIKHSNL	NetMHC	270.13	164.42	0.609	86	0.279	412.985	338.064	0.819	164.42	270.13	406.5	836.8	349.7357273	425.3436955	326.3923717	400.6268017	M5_p20	-1.1	-1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.271	86	0	0	NA	9qA3	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr9	88476836	88476836	A	G	ENSMUST00000173801.7	1	ENSMUSG00000032423	missense	F/L	207	Syncrip	ENSMUST00000173801.7:c.619T>C	ENSMUSP00000133649.1:p.Phe207Leu	H-2-Kb	8	5	7	LNRGYALV	LNRGYAFV	NetMHC	300.95	433.7	1.441	80	0.25	353.739	317.073	0.896	433.7	300.95	347.9	331	249.8848923	376.4783444	286.246378	409.9585987	M5_p20	0.014285714	0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.245	80	0	0	NA	9qE3.1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr9	71284968	71284968	GC	G	ENSMUST00000034723.5	1	ENSMUSG00000013584	FS	P/X	401	Aldh1a2	ENSMUST00000034723.5:c.1203del	ENSMUSP00000034723.5:p.Thr402ProfsTer25	H-2-Kb	8	16	0	TSLMTCGL	NA	SMMPMBEC	313.863	NA	NA	130	0.277	381.785	NA	NA	NA	343.87	NA	419.7	NA	422.4156501	NA	313.8629122	M5_p20	1.442857143	1.442857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.271	130	0	0	NA	9qD	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr9	41969739	41969739	T	G	ENSMUST00000060989.8	1	ENSMUSG00000049313	missense	K/T	2162	Sorl1	ENSMUST00000060989.8:c.6485A>C	ENSMUSP00000058613.8:p.Lys2162Thr	H-2-Kb	9	7	5	ILYTTHRRL	ILYTKHRRL	NetMHCpan	38.5	39.5	1.026	44	0.386	207.103	89.609	0.433	28.42	39.88	39.5	38.5	191.9154771	390.9399022	139.7172407	374.3260056	M5_p20	-1.585714286	-0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.364	44	0	0	NA	9qA5.1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	2	1	sgMsh2	cell line
chr9	39078200	39078200	A	G	ENSMUST00000056499.3	NA	ENSMUSG00000048501	missense	F/L	182	Olfr938	ENSMUST00000056499.3:c.544T>C	ENSMUSP00000055053.2:p.Phe182Leu	H-2-Kb	9	3	9	INHYFCDLL	INHYFCDLF	NetMHC	40.99	129.13	3.15	181	0.221	94.887	238.502	2.514	129.13	40.99	365.4	57	223.9288243	132.7730709	253.0754397	146.3019114	M5_p20	0.7	0.7	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.225	181	0	0	NA	9qA5.1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	0.96726579	sgMsh2	cell line
chr8	124028933	124028933	T	C	ENSMUST00000034457.8	1	ENSMUSG00000031976	missense	Y/H	460	Urb2	ENSMUST00000034457.8:c.1378T>C	ENSMUSP00000034457.8:p.Tyr460His	H-2-Kb	9	6	6	TVFQTHAKL	TVFQTYAKL	NetMHC	42.12	10.72	0.255	230	0.226	141.749	43.932	0.31	10.72	42.12	14.2	48.4	86.71814915	303.4659719	73.66310144	235.0985768	M5_p20	-0.414285714	0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.235	230	0	0	NA	8qE2	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr9	71725634	71725634	T	G	ENSMUST00000072899.8	5	ENSMUSG00000032232	missense	N/T	145	Cgnl1	ENSMUST00000072899.8:c.434A>C	ENSMUSP00000072672.2:p.Asn145Thr	H-2-Kb	9	10	2	LTFQRHPEL	LNFQRHPEL	NetMHCpan	36.8	28.1	0.764	95	0.189	90.799	70.924	0.781	73.26	81.31	28.1	36.8	84.74420308	133.0791444	68.58829388	100.2882377	M5_p20	-1.385714286	-0.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.206	95	0	0	NA	9qD	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	0.885585568	sgMsh2	cell line
chr9	44402403	44402403	G	A	ENSMUST00000213388.1	1	ENSMUSG00000032114	missense	V/I	409	Slc37a4	ENSMUST00000213388.1:c.1225G>A	ENSMUSP00000150843.1:p.Val409Ile	H-2-Kb	9	11	1	IVFFLLRNI	VVFFLLRNI	NetMHCpan	47.8	44.7	0.935	111	0.315	187.871	134.222	0.714	72.96	87.93	44.7	47.8	195.4834522	287.8127307	217.8963724	288.5692163	M5_p20	1.385714286	2.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.311	111	0	0	NA	9qA5.2	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr9	63146869	63146869	C	A	ENSMUST00000055281.7	1	ENSMUSG00000022245	missense	W/C	15	Skor1	ENSMUST00000055281.7:c.45G>T	ENSMUSP00000055037.7:p.Trp15Cys	H-2-Kb	9	6	6	VTLRLCVPL	VTLRLWVPL	NetMHCpan	76.9	45.6	0.593	64	0.172	150.019	84.544	0.564	69.03	88.08	45.6	76.9	126.2147176	266.7534224	100.0575812	211.9580913	M5_p20	1.714285714	1.9	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.175	64	0	0	NA	9qB	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	0.752317837	sgMsh2	cell line
chr9	80136750	80136750	GA	G	ENSMUST00000165607.8	1	ENSMUSG00000034252	FS	K/X	888	Senp6	ENSMUST00000165607.8:c.2672del	ENSMUSP00000126777.2:p.Asn891IlefsTer44	H-2-Kb	9	47	0	ASVLYIIQM	NA	NetMHC	227.71	NA	NA	123	0.293	259.534	NA	NA	NA	227.71	NA	259.5	NA	350.0338139	NA	259.5673122	M5_p20	2.014285714	2.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.294	123	0	0	NA	9qE1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr9	39258136	39258136	A	C	ENSMUST00000076903.2	NA	ENSMUSG00000063380	missense	C/G	182	Olfr945	ENSMUST00000076903.2:c.544T>G	ENSMUSP00000076169.2:p.Cys182Gly	H-2-Kb	9	5	7	VINHYFGDI	VINHYFCDI	NetMHC	248.12	402.57	1.622	367	0.46	313.678	336.411	1.072	402.57	248.12	262.7	378.9	382.9217191	379.4110717	289.9011913	248.4562923	M5_p20	-0.657142857	0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.454	367	0	0	NA	9qA5.1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	2	1	sgMsh2	cell line
chr9	39258136	39258136	A	C	ENSMUST00000076903.2	NA	ENSMUSG00000063380	missense	C/G	182	Olfr945	ENSMUST00000076903.2:c.544T>G	ENSMUSP00000076169.2:p.Cys182Gly	H-2-Kb	9	6	6	INHYFGDIL	INHYFCDIL	NetMHCpan	249.4	114.5	0.459	367	0.46	350.747	161.261	0.46	107.57	280.66	114.5	249.4	208.0223508	420.8332054	225.553723	456.2995075	M5_p20	0.385714286	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.454	367	0	0	NA	9qA5.1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	2	1	sgMsh2	cell line
chr9	39018999	39018999	G	T	ENSMUST00000214410.1	5	ENSMUSG00000058820	missense	L/I	181	Olfr146	ENSMUST00000214410.1:c.541C>A	ENSMUSP00000149294.1:p.Leu181Ile	H-2-Kb	9	4	8	INHYFCDII	INHYFCDLI	NetMHC	329.69	127.26	0.386	223	0.152	436.374	256.697	0.588	127.26	329.69	183.7	356.2	329.6932077	516.547186	338.259498	521.4948213	M5_p20	0.9	0.9	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.16	223	0	0	NA	9qA5.1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	0.687833451	sgMsh2	cell line
chr9	59324811	59324811	A	G	ENSMUST00000026265.7	1	ENSMUSG00000025235	missense	V/A	362	Bbs4	ENSMUST00000026265.7:c.1085T>C	ENSMUSP00000026265.6:p.Val362Ala	H-2-Kb	9	8	4	RAYAEAVRL	RAYVEAVRL	NetMHCpan	175.4	120.3	0.686	165	0.267	497.9	316.494	0.636	232.02	361.77	120.3	175.4	400.9682638	634.0302809	528.7495369	724.853099	M5_p20	0.328571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.272	165	0	0	NA	9qB	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr9	43791318	43791318	A	G	ENSMUST00000034510.8	1	ENSMUSG00000032012	missense	M/V	121	Nectin1	ENSMUST00000034510.8:c.361A>G	ENSMUSP00000034510.7:p.Met121Val	H-2-Kb	9	11	1	VYICEFATF	MYICEFATF	SMM	270.464	693.601	2.564	82	0.244	347.49	830.945	2.391	915.58	403.74	908.1	406.8	693.6014622	270.4643321	753.7893549	291.2393144	M5_p20	1.457142857	1.571428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.246	82	0	0	NA	9qA5.1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr9	105022362	105022362	C	T	ENSMUST00000057742.14	1	ENSMUSG00000032564	missense	P/S	415	Cpne4	ENSMUST00000057742.14:c.1243C>T	ENSMUSP00000049663.8:p.Pro415Ser	H-2-Db	9	4	8	YGPTNIASI	YGPTNIAPI	NetMHC	7.6	3.11	0.409	188	0.218	81.974	22.823	0.278	3.11	7.6	6.6	17.2	46.09141064	163.9154914	39.04541112	146.7472596	M5_p20	0.6	0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.207	188	0	0	NA	9qF1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	0.889884527	sgMsh2	cell line
chr9	100855832	100855832	A	T	ENSMUST00000129269.7	1	ENSMUSG00000037286	missense	E/V	414	Stag1	ENSMUST00000129269.7:c.1241A>T	ENSMUSP00000116205.1:p.Glu414Val	H-2-Db	9	3	9	EALSNEDCV	EALSNEDCE	NetMHC	162.17	20754.53	127.98	354	0.24	364.555	11513.819	31.583	20754.53	162.17	29954.3	951.5	2273.107631	411.7370988	1269.316718	317.3730167	M5_p20	-0.114285714	-0.114285714	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.241	354	0	0	NA	9qE3.3	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chrX	133588496	133588496	A	G	ENSMUST00000149154.7	1	ENSMUSG00000051323	missense	M/T	977	Pcdh19	ENSMUST00000149154.7:c.2930T>C	ENSMUSP00000116886.1:p.Met977Thr	H-2-Db	9	5	7	WMPRNPTPT	WMPRNPMPT	NetMHC	233.44	1377.14	5.899	58	0.517	363.988	1119.682	3.076	1377.14	233.44	3001.1	2034.1	862.223787	394.1123099	717.0839465	333.8643134	M5_p20	-2.028571429	-1.557142857	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.516	58	0	0	NA	XqE3	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	sgMsh2	cell line
chr9	106155782	106155782	A	G	ENSMUST00000036382.12	1	ENSMUSG00000020258	missense	V/A	344	Glyctk	ENSMUST00000036382.12:c.1031T>C	ENSMUSP00000047761.6:p.Val344Ala	H-2-Kb	8	10	2	RAARFYGL	RVARFYGL	NetMHCpan	27.8	30.5	1.097	54	0.093	63.802	70.784	1.109	50	37.5	30.5	27.8	91.56721386	90.10315536	110.8510982	119.8781411	M5_p20	0.571428571	0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.127	54	0	0	NA	9qF1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	0.545967801	sgMsh2	cell line
chr9	106155782	106155782	A	G	ENSMUST00000036382.12	1	ENSMUSG00000020258	missense	V/A	344	Glyctk	ENSMUST00000036382.12:c.1031T>C	ENSMUSP00000047761.6:p.Val344Ala	H-2-Kb	8	11	1	AARFYGLL	VARFYGLL	NetMHCpan	46.2	13.4	0.29	54	0.093	94.506	24.316	0.257	14.69	61.15	13.4	46.2	33.94220093	127.8615603	42.43654321	145.4587999	M5_p20	0.857142857	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.127	54	0	0	NA	9qF1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	0.545967801	sgMsh2	cell line
chrM	13256	13256	C	A	ENSMUST00000082418.1	NA	ENSMUSG00000064367	missense	N/K	505	mt-Nd5	ENSMUST00000082418.1:c.1515C>A	ENSMUSP00000081001.2:p.Asn505Lys	H-2-Kb	8	6	6	IALELKNL	IALELNNL	NetMHC	87.59	46.21	0.528	1066	0.04	127.031	78.924	0.621	46.21	87.59	70.2	118	87.64759423	136.0629867	115.0111643	150.2242346	M5_p20	0.328571429	0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.038	1066	0	0	NA	.	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	sgMsh2	cell line
chrX	13665387	13665387	T	C	ENSMUST00000053659.1	1	ENSMUSG00000047678	missense	V/A	58	Gpr82	ENSMUST00000053659.1:c.173T>C	ENSMUSP00000062535.1:p.Val58Ala	H-2-Kb	8	8	4	ANLATANL	ANLVTANL	NetMHC	110.98	65.42	0.589	166	0.494	127.103	105.176	0.827	65.42	110.98	97.7	151.4	116.611129	121.5458122	112.6522836	132.6600022	M5_p20	0.5	0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.518	166	0	0	NA	XqA1.1	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	sgMsh2	cell line
chrX	7616007	7616007	C	A	ENSMUST00000115726.8	1	ENSMUSG00000031142	missense	L/I	577	Cacna1f	ENSMUST00000115726.8:c.1729C>A	ENSMUSP00000111391.2:p.Leu577Ile	H-2-Kb	8	10	2	MILKLYGL	MLLKLYGL	SMM	170.114	702.652	4.13	66	0.379	210.772	766.476	3.637	2079.27	216.55	830.3	222	702.6515361	170.1139779	701.0354824	204.9934573	M5_p20	1.471428571	1.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.395	66	0	0	NA	XqA1.1	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	sgMsh2	cell line
chr9	99320290	99320290	C	T	ENSMUST00000042158.12	1	ENSMUSG00000037681	missense	V/M	523	Esyt3	ENSMUST00000042158.12:c.1567G>A	ENSMUSP00000038757.6:p.Val523Met	H-2-Kb	8	7	5	FSFFMHSV	FSFFVHSV	NetMHCpan	68.3	138.4	2.026	55	0.218	163.794	233.865	1.428	606.21	289.24	138.4	68.3	210.2519343	155.5034397	257.4779247	172.0838049	M5_p20	0.985714286	0.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.216	55	0	0	NA	9qE3.3	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	0.928575158	sgMsh2	cell line
chr9	108052065	108052065	A	G	ENSMUST00000162355.7	1	ENSMUSG00000041528	missense	V/A	1271	Rnf123	ENSMUST00000162355.7:c.3812T>C	ENSMUSP00000125745.1:p.Val1271Ala	H-2-Kb	8	8	4	ISAAFQPC	ISAVFQPC	SMM	176.092	168.943	0.959	178	0.23	417.672	294.935	0.706	357.2	561.35	396.1	585.7	168.9429215	176.0921516	232.6697911	273.9933359	M5_p20	0.428571429	0.714285714	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.246	178	0	0	NA	9qF1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr9	108305809	108305809	G	T	ENSMUST00000044725.8	1	ENSMUSG00000039461	missense	L/M	46	Tcta	ENSMUST00000044725.8:c.136C>A	ENSMUSP00000045063.7:p.Leu46Met	H-2-Kb	8	5	7	TLFKLLML	TLFKLLLL	NetMHCpan	208.3	199.1	0.956	52	0.231	403.808	481.343	1.192	974.89	814.26	199.1	208.3	517.2970479	430.2689433	445.3895263	377.3462166	M5_p20	2.285714286	2.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.249	52	0	0	NA	9qF1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr9	115257544	115257544	A	G	ENSMUST00000035010.9	1	ENSMUSG00000032437	missense	Y/H	336	Stt3b	ENSMUST00000035010.9:c.1006T>C	ENSMUSP00000035010.8:p.Tyr336His	H-2-Kb	9	4	8	QAYAFLQHL	QAYAFLQYL	NetMHC	5.62	6.61	1.176	37	0.351	20.241	21.852	1.08	6.61	5.62	8.7	6.9	35.00338139	33.58226621	61.83722614	56.52622723	M5_p20	0.6	0.6	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.348	37	0	0	NA	9qF3	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	2	1	sgMsh2	cell line
chr9	106155782	106155782	A	G	ENSMUST00000036382.12	1	ENSMUSG00000020258	missense	V/A	344	Glyctk	ENSMUST00000036382.12:c.1031T>C	ENSMUSP00000047761.6:p.Val344Ala	H-2-Kb	9	10	2	RAARFYGLL	RVARFYGLL	NetMHC	16.87	23.3	1.381	54	0.093	71.279	81.97	1.15	23.3	16.87	21.8	17.5	140.6403699	125.0575741	181.6561058	157.1267038	M5_p20	0.857142857	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.127	54	0	0	NA	9qF1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	0.545967801	sgMsh2	cell line
chr9	108305809	108305809	G	T	ENSMUST00000044725.8	1	ENSMUSG00000039461	missense	L/M	46	Tcta	ENSMUST00000044725.8:c.136C>A	ENSMUSP00000045063.7:p.Leu46Met	H-2-Kb	9	4	8	VTLFKLLML	VTLFKLLLL	SMMPMBEC	114.354	105.743	0.925	52	0.231	118.955	110.396	0.928	115.05	116.61	125.2	121.3	101.8849414	123.9110394	105.7426037	114.3536418	M5_p20	2.285714286	2.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.249	52	0	0	NA	9qF1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	sgMsh2	cell line
chr9	99320290	99320290	C	T	ENSMUST00000042158.12	1	ENSMUSG00000037681	missense	V/M	523	Esyt3	ENSMUST00000042158.12:c.1567G>A	ENSMUSP00000038757.6:p.Val523Met	H-2-Kb	9	5	7	QVFSFFMHS	QVFSFFVHS	SMM	57.559	60.549	1.052	55	0.218	164.785	259.089	1.572	363.92	157.68	405.2	235.7	60.54942175	57.55857057	154.2588183	171.8897579	M5_p20	0.785714286	1.5	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.216	55	0	0	NA	9qE3.3	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	0.928575158	sgMsh2	cell line
chrX	86747655	86747655	G	A	ENSMUST00000113966.7	5	ENSMUSG00000052372	missense	P/S	560	Il1rapl1	ENSMUST00000113966.7:c.1678C>T	ENSMUSP00000109599.1:p.Pro560Ser	H-2-Kb	9	10	2	MSFKRIEPI	MPFKRIEPI	NetMHCpan	58.3	2180.6	37.403	82	0.451	177.366	2262.711	12.757	4631.31	173.91	2180.6	58.3	2344.822647	233.4049166	1946.480243	180.8214719	M5_p20	-0.242857143	-0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.474	82	0	0	NA	XqC1	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	sgMsh2	cell line
chrX	9849913	9849913	T	C	ENSMUST00000057113.2	NA	ENSMUSG00000048994	missense	S/P	55	H2al3	ENSMUST00000057113.2:c.163T>C	ENSMUSP00000052025.1:p.Ser55Pro	H-2-Kb	9	6	6	LNYVTPSIL	LNYVTSSIL	SMM	217.325	118.334	0.545	200	0.56	286.985	138.425	0.482	151.65	320.37	125.2	253.6	118.334124	217.325156	242.8007366	383.9281887	M5_p20	1.157142857	1.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.55	200	0	0	NA	XqA1.1	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	sgMsh2	cell line
chrX	101673545	101673545	GA	G	ENSMUST00000044475.4	1	ENSMUSG00000034160	FS	K/X	757	Ogt	ENSMUST00000044475.4:c.2271del	ENSMUSP00000045409.4:p.Lys757AsnfsTer23	H-2-Kb	9	22	0	VTQLLICPL	NA	NetMHCpan	324.4	NA	NA	77	0.468	478.008	NA	NA	NA	401.25	NA	324.4	NA	554.7662088	NA	602.9065471	M5_p20	1.9	2.085714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.493	77	0	0	NA	XqD	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	sgMsh2	cell line
chr1	140570462	140570462	G	A	ENSMUST00000120796.7	5	ENSMUSG00000052726	missense	M/I	892	Kcnt2	ENSMUST00000120796.7:c.2676G>A	ENSMUSP00000113333.1:p.Met892Ile	H-2-Db	9	7	5	FSISILDTL	FSISMLDTL	NetMHCpan	50	19.8	0.396	89	0.169	159.513	32.575	0.204	11.14	97.4	19.8	50	46.62512402	221.6256386	45.34923862	266.4219484	M5	1.657142857	1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.166	89	0	0	NA	1qF	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.703856828	sgMsh2	cell line
chr1	85579187	85579187	CT	C	ENSMUST00000093508.6	1	ENSMUSG00000070034	FS	K/X	385	Sp110	ENSMUST00000093508.6:c.1154del	ENSMUSP00000091226.6:p.Lys385SerfsTer13	H-2-Db	9	11	1	SAFRMRQEI	NA	SMMPMBEC	212.114	NA	NA	155	0.09	246.936	NA	NA	NA	356.88	NA	263.4	NA	230.4729708	NA	212.1143253	M5	-0.971428571	-0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0903	155	0	0	NA	1qC5	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.382881154	sgMsh2	cell line
chr1	127412243	127412243	G	T	ENSMUST00000038361.10	1	ENSMUSG00000036155	missense	V/L	454	Mgat5	ENSMUST00000038361.10:c.1360G>T	ENSMUSP00000038359.4:p.Val454Leu	H-2-Kb	8	4	8	QSLVYGKL	QSLVYGKV	NetMHC	15.26	75.8	4.967	116	0.302	52.362	246.565	4.709	75.8	15.26	265.7	39.6	232.6697911	65.12383991	260.4593785	71.90183929	M5	0.771428571	0.771428571	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.303	116	65	12	0.184615385	1qE3	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr1	128364313	128364313	A	G	ENSMUST00000027602.14	1	ENSMUSG00000026356	missense	V/A	476	Dars	ENSMUST00000027602.14:c.1427T>C	ENSMUSP00000027602.8:p.Val476Ala	H-2-Kb	8	11	1	ATMLFLGL	VTMLFLGL	NetMHCpan	13.4	5.5	0.41	97	0.227	28.635	8.869	0.31	5.27	15.32	5.5	13.4	14.47904774	54.54312289	12.23883275	41.95077612	M5	2.142857143	2.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.24	97	254	55	0.216535433	1qE3	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr1	84912361	84912361	C	A	ENSMUST00000027422.6	1	ENSMUSG00000026220	missense	A/S	408	Slc16a14	ENSMUST00000027422.6:c.1222G>T	ENSMUSP00000027422.5:p.Ala408Ser	H-2-Kb	8	6	6	LMHTYSSL	LMHTYASL	NetMHC	32.78	13.28	0.405	98	0.173	74.006	33.853	0.457	13.28	32.78	20.2	35.1	63.64144033	143.7937467	47.50507412	112.911974	M5	-0.157142857	-0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.179	98	0	0	NA	1qC5	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.758978146	sgMsh2	cell line
chr1	74921451	74921451	A	C	ENSMUST00000094844.3	1	ENSMUSG00000047021	missense	F/V	787	Cfap65	ENSMUST00000094844.3:c.2359T>G	ENSMUSP00000092440.3:p.Phe787Val	H-2-Kb	8	4	8	IFYLNFNV	IFYLNFNF	NetMHC	47.65	119.23	2.502	52	0.288	59.119	234.727	3.97	119.23	47.65	254.8	175.9	256.2949211	56.33003227	214.6545013	61.9070344	M5	0.757142857	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.294	52	0	0	NA	1qC4	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr1	132014588	132014588	A	G	ENSMUST00000086556.11	1	ENSMUSG00000026436	missense	Y/C	66	Elk4	ENSMUST00000086556.11:c.197A>G	ENSMUSP00000083743.5:p.Tyr66Cys	H-2-Kb	8	6	6	RALRYCYV	RALRYYYV	NetMHC	53.18	33.42	0.628	64	0.266	95.601	68.626	0.718	33.42	53.18	49.2	71.6	88.05215715	119.6024291	102.2680559	132.3548926	M5	0.742857143	0.742857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.283	64	50	6	0.12	1qE4	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr1	20559431	20559431	TG	T	ENSMUST00000088448.11	1	ENSMUSG00000043760	FS	H/X	650	Pkhd1	ENSMUST00000088448.11:c.1948del	ENSMUSP00000085794.5:p.His650ThrfsTer61	H-2-Kb	8	28	0	VTLRISSL	NA	NetMHCpan	39.4	NA	NA	44	0.205	86.803	NA	NA	NA	55.1	NA	39.4	NA	139.2323008	NA	118.5059074	M5	0.757142857	0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.235	44	1	0	0	1qA4	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.996423823	sgMsh2	cell line
chr1	144753924	144753924	A	G	ENSMUST00000027603.3	1	ENSMUSG00000026357	missense	L/S	199	Rgs18	ENSMUST00000027603.3:c.596T>C	ENSMUSP00000027603.3:p.Leu199Ser	H-2-Kb	8	6	6	KSETYSHL	KSETYLHL	SMMPMBEC	57.642	95.442	1.656	112	0.295	86.926	176.61	2.032	217.47	90.15	351.5	285.2	135.7500506	83.70280268	95.44210297	57.64212727	M5	-0.928571429	-0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.278	112	0	0	NA	1qF	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr1	88277397	88277397	A	C	ENSMUST00000054674.14	1	ENSMUSG00000044783	missense	L/V	25	Hjurp	ENSMUST00000054674.14:c.73T>G	ENSMUSP00000054263.8:p.Leu25Val	H-2-Kb	8	4	8	SSSRFQTV	SSSRFQTL	NetMHC	96.2	19.62	0.204	121	0.074	224.912	53.233	0.237	19.62	96.2	37.8	204.5	68.66572344	245.323979	84.86722465	307.4255792	M5	-0.471428571	-0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.08	121	122	6	0.049180328	1qD	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.33920811	sgMsh2	cell line
chr1	58595689	58595689	A	T	ENSMUST00000027193.8	1	ENSMUSG00000026032	missense	I/F	67	Ndufb3	ENSMUST00000027193.8:c.199A>T	ENSMUSP00000027193.8:p.Ile67Phe	H-2-Kb	8	9	3	GNFTFPSV	GNITFPSV	NetMHCpan	49.1	289.6	5.898	85	0.188	107.5	583.368	5.427	915.1	105.67	289.6	49.1	648.2462304	133.5795574	518.4895408	109.3301641	M5	0.457142857	0.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.213	85	414	110	0.265700483	1qC1.3	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.903141593	sgMsh2	cell line
chr1	133320995	133320995	CT	C	ENSMUST00000094557.6	1	ENSMUSG00000103421	FS	F/X	101	Golt1a	ENSMUST00000094557.6:c.305del	ENSMUSP00000092136.3:p.Phe102SerfsTer17	H-2-Kb	8	9	4	KGFSLSSL	NA	NetMHCpan	89.7	NA	NA	69	0.203	116.583	NA	NA	NA	109.93	NA	89.7	NA	126.6893185	NA	123.2366829	M5	1.085714286	1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.216	69	8	0	0	1qE4	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.915861897	sgMsh2	cell line
chr1	133376953	133376953	G	A	ENSMUST00000135222.8	1	ENSMUSG00000070644	missense	V/M	305	Etnk2	ENSMUST00000135222.8:c.913G>A	ENSMUSP00000114272.2:p.Val305Met	H-2-Kb	8	11	1	MQWLRYYL	VQWLRYYL	NetMHCpan	133.3	60.7	0.455	48	0.25	316.14	133.557	0.422	49.73	195.02	60.7	133.3	244.7597495	522.0835386	206.414404	437.2602513	M5	-0.557142857	-0.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.244	48	8	2	0.25	1qE4	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr1	151351713	151351713	T	C	ENSMUST00000023918.12	1	ENSMUSG00000023150	missense	Y/H	91	Ivns1abp	ENSMUST00000023918.12:c.271T>C	ENSMUSP00000023918.6:p.Tyr91His	H-2-Kb	8	5	7	VLLNYAHT	VLLNYAYT	SMMPMBEC	192.637	198.034	1.028	152	0.243	277.822	339.303	1.221	371.18	233.73	1146.3	1299.8	307.4255792	321.9141004	198.0341096	192.6371303	M5	0.1	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.245	152	231	44	0.19047619	1qG1	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr1	59199042	59199042	T	C	ENSMUST00000027178.12	1	ENSMUSG00000026024	missense	I/M	710	Als2	ENSMUST00000027178.12:c.2130A>G	ENSMUSP00000027178.6:p.Ile710Met	H-2-Kb	8	8	4	KSQMLRPL	KSQILRPL	NetMHC	256.26	392.88	1.533	92	0.293	266.552	345.964	1.298	392.88	256.26	972.8	779.2	247.5939338	270.2340064	299.0473787	262.8693795	M5	-0.128571429	-0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.292	92	42	9	0.214285714	1qC1.3	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr1	140570462	140570462	G	A	ENSMUST00000120796.7	5	ENSMUSG00000052726	missense	M/I	892	Kcnt2	ENSMUST00000120796.7:c.2676G>A	ENSMUSP00000113333.1:p.Met892Ile	H-2-Kb	8	9	3	ISILDTLL	ISMLDTLL	SMMPMBEC	204.993	246.456	1.202	89	0.169	282.625	348.563	1.233	335.1	320.49	385.7	615.7	362.0261985	244.7597495	246.456343	204.9934573	M5	1.557142857	1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.166	89	0	0	NA	1qF	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.703856828	sgMsh2	cell line
chr1	20559431	20559431	TG	T	ENSMUST00000088448.11	1	ENSMUSG00000043760	FS	H/X	650	Pkhd1	ENSMUST00000088448.11:c.1948del	ENSMUSP00000085794.5:p.His650ThrfsTer61	H-2-Kb	8	23	0	GTHVYVTL	NA	NetMHCpan	210.9	NA	NA	44	0.205	301.336	NA	NA	NA	691.26	NA	210.9	NA	379.9618556	NA	222.7101447	M5	0.9	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.235	44	1	0	0	1qA4	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.996423823	sgMsh2	cell line
chr1	151351713	151351713	T	C	ENSMUST00000023918.12	1	ENSMUSG00000023150	missense	Y/H	91	Ivns1abp	ENSMUST00000023918.12:c.271T>C	ENSMUSP00000023918.6:p.Tyr91His	H-2-Kb	9	7	5	LNYAHTAQL	LNYAYTAQL	NetMHCpan	10.4	5.2	0.5	152	0.243	31.415	21.341	0.679	6.52	17.41	5.2	10.4	48.31811688	60.27122243	36.16179668	45.42030017	M5	-0.185714286	-0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.245	152	231	44	0.19047619	1qG1	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr1	20559431	20559431	TG	T	ENSMUST00000088448.11	1	ENSMUSG00000043760	FS	H/X	650	Pkhd1	ENSMUST00000088448.11:c.1948del	ENSMUSP00000085794.5:p.His650ThrfsTer61	H-2-Kb	9	28	0	VTLRISSLL	NA	NetMHC	146.04	NA	NA	44	0.205	256.023	NA	NA	NA	146.04	NA	147.2	NA	364.8463451	NA	488.9337312	M5	1.4	1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.235	44	1	0	0	1qA4	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.996423823	sgMsh2	cell line
chr1	128364313	128364313	A	G	ENSMUST00000027602.14	1	ENSMUSG00000026356	missense	V/A	476	Dars	ENSMUST00000027602.14:c.1427T>C	ENSMUSP00000027602.8:p.Val476Ala	H-2-Kb	9	6	6	IGLERATML	IGLERVTML	NetMHCpan	169.6	134.8	0.795	97	0.227	303	226.99	0.749	136.11	195.56	134.8	169.6	457.2039776	492.1641774	317.8703353	410.4403034	M5	0.371428571	0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.24	97	254	55	0.216535433	1qE3	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr1	59556301	59556301	C	T	ENSMUST00000114243.7	1	ENSMUSG00000047361	missense	P/L	417	Gm973	ENSMUST00000114243.7:c.1250C>T	ENSMUSP00000109881.1:p.Pro417Leu	H-2-Kb	9	3	9	IHFHAAQPL	IHFHAAQPP	NetMHCpan	115.2	9505.8	82.516	60	0.183	304.162	6515.769	21.422	16133.04	197.07	9505.8	115.2	1897.186388	411.2538721	3525.737704	478.9056933	M5	0.271428571	0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.182	60	0	0	NA	1qC2	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.77169845	sgMsh2	cell line
chr1	133320995	133320995	CT	C	ENSMUST00000094557.6	1	ENSMUSG00000103421	FS	F/X	101	Golt1a	ENSMUST00000094557.6:c.305del	ENSMUSP00000092136.3:p.Phe102SerfsTer17	H-2-Kb	9	5	8	ISLFKGFSL	ISLFKGFFP	NetMHCpan	103.6	10938.6	105.585	69	0.203	245.353	6837.722	27.869	14319.84	216.39	10938.6	103.6	2061.151905	333.5108752	2736.843727	274.3152803	M5	1.157142857	1.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.216	69	8	0	0	1qE4	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.915861897	sgMsh2	cell line
chr1	85579187	85579187	CT	C	ENSMUST00000093508.6	1	ENSMUSG00000070034	FS	K/X	385	Sp110	ENSMUST00000093508.6:c.1154del	ENSMUSP00000091226.6:p.Lys385SerfsTer13	H-2-Kb	9	11	1	SAFRMRQEI	NA	NetMHC	222.54	NA	NA	155	0.09	380.963	NA	NA	NA	222.54	NA	325.3	NA	436.6264089	NA	527.5334467	M5	-0.971428571	-0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0903	155	0	0	NA	1qC5	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.382881154	sgMsh2	cell line
chr1	93408448	93408448	TG	T	ENSMUST00000170883.7	1	ENSMUSG00000034088	FS	P/X	1214	Hdlbp	ENSMUST00000170883.7:c.3641del	ENSMUSP00000127903.1:p.Pro1214GlnfsTer31	H-2-Kb	9	5	7	QVYMKPQHM	QVYMKPPAH	SMM	193.246	1815.976	9.397	123	0.154	254.906	7255.011	28.462	12321	228.46	23646.8	535.4	1815.975563	193.2457716	2189.021363	281.3519957	M5	-1.385714286	-1.057142857	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.166	123	491	97	0.197556008	1qD	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.703856828	sgMsh2	cell line
chr1	111862558	111862558	TA	T	ENSMUST00000035462.6	1	ENSMUSG00000038702	FS	F/X	82	Dsel	ENSMUST00000035462.6:c.246del	ENSMUSP00000043570.5:p.Phe82LeufsTer8	H-2-Kb	9	5	7	TSHLHILEL	TSHLHIFRA	NetMHCpan	218.7	1985	9.076	232	0.28	272.148	1696.979	6.235	1834.01	285.05	1985	218.7	1559.947563	278.6826939	1288.991341	265.6134116	M5	0.857142857	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.279	232	0	0	NA	1qE2.1	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr1	12848191	12848191	C	T	ENSMUST00000177608.7	1	ENSMUSG00000016918	missense	A/V	793	Sulf1	ENSMUST00000177608.7:c.2378C>T	ENSMUSP00000137523.1:p.Ala793Val	H-2-Kb	9	3	9	HNFLFCEFV	HNFLFCEFA	NetMHCpan	194.7	792.4	4.07	202	0.203	410.496	2005.326	4.885	2531.29	320.83	792.4	194.7	1995.767748	500.1612019	2014.883776	583.781059	M5	2.2	2.2	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.21	202	0	0	NA	1qA3	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.890421289	sgMsh2	cell line
chr1	85642993	85642993	A	G	ENSMUST00000080204.10	1	ENSMUSG00000070031	missense	K/R	448	Sp140	ENSMUST00000080204.10:c.1343A>G	ENSMUSP00000079095.4:p.Lys448Arg	H-2-Kb	9	10	2	SRMPYYYYF	SKMPYYYYF	SMM	234.482	268.602	1.146	77	0.156	335.317	342.105	1.02	335.61	342.35	348.6	524.7	268.6024688	234.4822647	349.3413547	328.2842143	M5	-0.3	-0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.177	77	0	0	NA	1qC5	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.750497943	sgMsh2	cell line
chr1	133386824	133386824	CG	C	ENSMUST00000153799.7	1	ENSMUSG00000070643	FS	P/X	314	Sox13	ENSMUST00000153799.7:c.942del	ENSMUSP00000119729.2:p.Ala315ProfsTer83	H-2-Kb	9	54	0	VGLWKTPPI	NA	NetMHCpan	262	NA	NA	41	0.293	432.747	NA	NA	NA	453.16	NA	262	NA	472.1826226	NA	412.3348098	M5	-0.057142857	0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.307	41	34	4	0.117647059	1qE4	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr1	85642993	85642993	A	G	ENSMUST00000080204.10	1	ENSMUSG00000070031	missense	K/R	448	Sp140	ENSMUST00000080204.10:c.1343A>G	ENSMUSP00000079095.4:p.Lys448Arg	H-2-Kb	9	4	8	SESSFFSRM	SESSFFSKM	SMM	350.841	639.897	1.824	77	0.156	480.171	992.792	2.068	1226.57	457.71	1243.7	666.4	639.8968908	350.8407252	759.0143731	502.6318444	M5	0.085714286	0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.177	77	0	0	NA	1qC5	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.750497943	sgMsh2	cell line
chr1	127412243	127412243	G	T	ENSMUST00000038361.10	1	ENSMUSG00000036155	missense	V/L	454	Mgat5	ENSMUST00000038361.10:c.1360G>T	ENSMUSP00000038359.4:p.Val454Leu	H-2-Kb	9	6	6	LVYGKLDSF	LVYGKVDSF	SMM	278.042	542.138	1.95	116	0.302	372.202	726.824	1.953	911.51	463.7	1434.9	1078.9	542.1381881	278.0417415	480.0096849	280.704904	M5	-0.471428571	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.303	116	65	12	0.184615385	1qE3	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr1	150808584	150808584	C	A	ENSMUST00000074783.11	5	ENSMUSG00000066842	missense	G/C	412	Hmcn1	ENSMUST00000074783.11:c.1234G>T	ENSMUSP00000074340.5:p.Gly412Cys	H-2-Kb	9	5	7	TGYDKDCYL	TGYDKDGYL	SMMPMBEC	281.352	241.129	0.857	95	0.284	397.422	570.225	1.435	814.53	465.91	815.3	889.7	325.9192408	328.9349344	241.1293081	281.3519957	M5	-1.028571429	-1.028571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.273	95	0	0	NA	1qG1	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr1	20559431	20559431	TG	T	ENSMUST00000088448.11	1	ENSMUSG00000043760	FS	H/X	650	Pkhd1	ENSMUST00000088448.11:c.1948del	ENSMUSP00000085794.5:p.His650ThrfsTer61	H-2-Kb	9	60	0	MWMKLFLQI	NA	SMM	311.968	NA	NA	44	0.205	388.75	NA	NA	NA	776.69	NA	447.7	NA	311.967965	NA	329.7995054	M5	1.342857143	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.235	44	1	0	0	1qA4	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.996423823	sgMsh2	cell line
chr1	131758835	131758835	A	C	ENSMUST00000049027.9	1	ENSMUSG00000042268	missense	K/T	431	Slc26a9	ENSMUST00000049027.9:c.1292A>C	ENSMUSP00000036916.3:p.Lys431Thr	H-2-Kb	9	3	9	GSYLYPLPT	GSYLYPLPK	SMMPMBEC	391.967	1189.187	3.034	43	0.256	468.406	1892.113	4.039	9379.31	2289.35	2510.4	531.2	1273.82568	405.6112574	1189.186581	391.9674468	M5	0.157142857	0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.286	43	3	0	0	1qE4	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr10	68778643	68778643	T	C	ENSMUST00000080995.7	1	ENSMUSG00000060044	missense	L/P	296	Tmem26	ENSMUST00000080995.7:c.887T>C	ENSMUSP00000079789.6:p.Leu296Pro	H-2-Db	9	5	7	FAVKNSPVM	FAVKNSLVM	NetMHC	8.71	9.25	1.062	165	0.273	25.374	27.679	1.091	9.25	8.71	9.8	10.7	46.62512402	43.51309752	45.5585612	40.04700113	M5	0.071428571	0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.289	165	0	0	NA	10qB5.3	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr1	172599080	172599080	CT	C	ENSMUST00000094303.5	5	ENSMUSG00000070504	FS	S/X	100	Fcrl6	ENSMUST00000094303.5:c.298del	ENSMUSP00000091861.4:p.Ser100ValfsTer28	H-2-Db	9	26	0	CSLCNMKPL	NA	NetMHC	30.38	NA	NA	128	0.289	34.518	NA	NA	NA	30.38	NA	32	NA	37.03565246	NA	49.38215065	M5	0.428571429	0.428571429	TRUE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;Vardict	3	0.297	128	0	0	NA	1qH3	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr10	24244309	24244309	A	G	ENSMUST00000095784.2	1	ENSMUSG00000020000	missense	M/V	112	Moxd1	ENSMUST00000095784.2:c.334A>G	ENSMUSP00000093460.2:p.Met112Val	H-2-Db	9	9	3	YAVENSTHT	YAMENSTHT	NetMHC	73.96	39.04	0.528	188	0.218	278.875	128.413	0.46	39.04	73.96	85.6	282.6	197.0697656	337.7691648	171.2261138	275.1503059	M5	-1.171428571	-0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.228	188	2	0	0	10qA4	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	0.966743114	sgMsh2	cell line
chr10	75640498	75640498	AG	A	ENSMUST00000095541.10	1	ENSMUSG00000006342	FS	P/X	311	Susd2	ENSMUST00000095541.10:c.933del	ENSMUSP00000093197.3:p.Cys312AlafsTer62	H-2-Db	9	24	0	SSLTMVVTL	NA	NetMHC	85.8	NA	NA	38	0.237	141.249	NA	NA	NA	85.8	NA	122.7	NA	193.0278618	NA	159.7975071	M5	2.357142857	2.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.264	38	0	0	NA	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr1	165539831	165539831	A	G	ENSMUST00000027852.14	1	ENSMUSG00000026567	missense	T/A	557	Adcy10	ENSMUST00000027852.14:c.1669A>G	ENSMUSP00000027852.8:p.Thr557Ala	H-2-Db	9	4	8	SFHQNFYAI	SFHQNFYTI	SMM	105.104	62.176	0.592	113	0.221	167.108	96.911	0.58	73.99	141.21	379.5	647.3	62.17560216	105.1041828	119.8312253	193.0056399	M5	-0.342857143	-0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.231	113	0	0	NA	1qH2.3	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.979463418	sgMsh2	cell line
chr10	5222390	5222390	T	A	ENSMUST00000215295.1	5	ENSMUSG00000096054	missense	E/V	5017	Syne1	ENSMUST00000215295.1:c.15050A>T	ENSMUSP00000150262.1:p.Glu5017Val	H-2-Db	10	9	3	SAVENLRSHM	SAEENLRSHM	NetMHC	57.64	2664.44	46.226	138	0.225	385.591	1949.724	5.056	2664.44	57.64	2716	85.3	805.8421878	685.8829388	1235.008652	952.0724539	M5	-1.4	-0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.244	138	11	1	0.090909091	10qA1	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr10	68778643	68778643	T	C	ENSMUST00000080995.7	1	ENSMUSG00000060044	missense	L/P	296	Tmem26	ENSMUST00000080995.7:c.887T>C	ENSMUSP00000079789.6:p.Leu296Pro	H-2-Db	11	5	7	FAVKNSPVMAL	FAVKNSLVMAL	NetMHCpan	139.4	136.7	0.981	165	0.273	479.924	423.713	0.883	274.55	315.59	136.7	139.4	572.8751711	644.2582669	2605.313561	2641.557083	M5	0.828571429	0.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.289	165	0	0	NA	10qB5.3	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr10	50754122	50754122	G	T	ENSMUST00000035606.9	5	ENSMUSG00000038774	missense	S/I	1769	Ascc3	ENSMUST00000035606.9:c.5306G>T	ENSMUSP00000036726.8:p.Ser1769Ile	H-2-Kb	8	8	4	MNPIYYSL	MNPSYYSL	NetMHC	10.83	12.27	1.133	129	0.217	32.613	36.465	1.118	12.27	10.83	28.9	21.7	44.02911945	43.52512229	62.62388407	64.23030732	M5	-0.028571429	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.217	129	89	10	0.112359551	10qB3	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	0.920101999	sgMsh2	cell line
chr1	172599080	172599080	CT	C	ENSMUST00000094303.5	5	ENSMUSG00000070504	FS	S/X	100	Fcrl6	ENSMUST00000094303.5:c.298del	ENSMUSP00000091861.4:p.Ser100ValfsTer28	H-2-Kb	8	18	0	SGLLYPIL	NA	NetMHC	36.01	NA	NA	128	0.289	70.893	NA	NA	NA	36.01	NA	47	NA	94.78508415	NA	125.2391179	M5	1.8	1.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.297	128	0	0	NA	1qH3	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr1	152855898	152855898	T	C	ENSMUST00000043560.14	1	ENSMUSG00000042772	missense	R/G	379	Smg7	ENSMUST00000043560.14:c.1135A>G	ENSMUSP00000041241.8:p.Arg379Gly	H-2-Kb	8	5	7	VSMDWLGL	VSMDWLRL	NetMHCpan	34.7	24.7	0.712	169	0.225	70.049	45.03	0.643	38.45	50.82	24.7	34.7	69.30107956	116.611129	51.61072977	89.27708467	M5	0.557142857	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.235	169	62	17	0.274193548	1qG3	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.996423823	sgMsh2	cell line
chr10	62393777	62393777	GC	G	ENSMUST00000020277.8	1	ENSMUSG00000020080	FS	G/X	707	Hkdc1	ENSMUST00000020277.8:c.2120del	ENSMUSP00000020277.8:p.Gly707AlafsTer25	H-2-Kb	8	6	6	VNTEWAGL	VNTEWGGF	NetMHC	62.69	4726.48	75.394	104	0.317	87.051	3759.69	43.189	4726.48	62.69	3640.2	116	3879.180607	81.04757034	3409.887101	93.0550614	M5	-0.485714286	-0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.302	104	2	0	0	10qB4	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr10	81509375	81509375	A	G	ENSMUST00000043709.7	1	ENSMUSG00000034792	missense	W/R	219	Gna15	ENSMUST00000043709.7:c.655T>C	ENSMUSP00000049175.7:p.Trp219Arg	H-2-Kb	8	11	1	RIHCFENV	WIHCFENV	SMM	346.529	467.455	1.349	139	0.245	369.99	655.698	1.772	843.94	365.18	1509.8	374.8	467.4552051	346.5293309	451.5855118	392.4099402	M5	0.542857143	0.542857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.248	139	0	0	NA	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr1	154633618	154633618	A	G	ENSMUST00000187541.6	1	ENSMUSG00000004110	missense	L/P	297	Cacna1e	ENSMUST00000187541.6:c.890T>C	ENSMUSP00000140937.1:p.Leu297Pro	H-2-Kb	8	8	4	DNIPFAVL	DNILFAVL	SMM	178.131	93.485	0.525	84	0.262	412.973	165.678	0.401	220.76	608.34	374.2	572	93.48458404	178.1312026	110.5961477	253.9451951	M5	1.714285714	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.288	84	0	0	NA	1qG3	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr10	53073510	53073510	A	C	ENSMUST00000105473.2	1	ENSMUSG00000038602	missense	I/L	232	Slc35f1	ENSMUST00000105473.2:c.694A>C	ENSMUSP00000101113.2:p.Ile232Leu	H-2-Kb	8	7	5	TLYGLSNV	TLYGISNV	NetMHCpan	486.3	752.7	1.548	55	0.2	498.671	1333.552	2.674	2203.84	827.9	752.7	486.3	1519.637493	507.8553127	1147.46646	489.4856902	M5	0.828571429	0.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	55	0	0	NA	10qB3	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	0.848020275	sgMsh2	cell line
chr10	26271888	26271888	T	C	ENSMUST00000060716.5	5	ENSMUSG00000051354	missense	L/P	487	Samd3	ENSMUST00000060716.5:c.1460T>C	ENSMUSP00000057805.5:p.Leu487Pro	H-2-Kb	9	6	6	QTFNFPETL	QTFNFLETL	NetMHC	70.68	27.41	0.388	105	0.219	201.184	82.234	0.409	27.41	70.68	32	90.4	132.4677013	311.967965	170.7064772	407.6148523	M5	0.014285714	0.014285714	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.232	105	0	0	NA	10qA4	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	0.983703519	sgMsh2	cell line
chr10	40466671	40466671	C	A	ENSMUST00000044672.10	1	ENSMUSG00000038481	missense	P/H	183	Cdk19	ENSMUST00000044672.10:c.548C>A	ENSMUSP00000040936.4:p.Pro183His	H-2-Kb	9	4	8	FARLFNSHL	FARLFNSPL	NetMHC	77.99	65.66	0.842	203	0.227	186.909	138.226	0.74	65.66	77.99	105.8	145.2	170.6514568	228.6177783	218.9021363	293.2580889	M5	-0.228571429	0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.215	203	136	31	0.227941176	10qB1	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	0.911621796	sgMsh2	cell line
chr10	75640498	75640498	AG	A	ENSMUST00000095541.10	1	ENSMUSG00000006342	FS	P/X	311	Susd2	ENSMUST00000095541.10:c.933del	ENSMUSP00000093197.3:p.Cys312AlafsTer62	H-2-Kb	9	24	0	SSLTMVVTL	NA	NetMHC	155.35	NA	NA	38	0.237	294.571	NA	NA	NA	155.35	NA	183.4	NA	453.0123063	NA	405.7420321	M5	2.357142857	2.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.264	38	0	0	NA	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr1	172599080	172599080	CT	C	ENSMUST00000094303.5	5	ENSMUSG00000070504	FS	S/X	100	Fcrl6	ENSMUST00000094303.5:c.298del	ENSMUSP00000091861.4:p.Ser100ValfsTer28	H-2-Kb	9	17	0	SSGLLYPIL	NA	SMM	150.699	NA	NA	128	0.289	183.057	NA	NA	NA	190.22	NA	290.4	NA	150.6988715	NA	175.8935847	M5	1.8	1.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.297	128	0	0	NA	1qH3	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr10	50754122	50754122	G	T	ENSMUST00000035606.9	5	ENSMUSG00000038774	missense	S/I	1769	Ascc3	ENSMUST00000035606.9:c.5306G>T	ENSMUSP00000036726.8:p.Ser1769Ile	H-2-Kb	9	7	5	IMNPIYYSL	IMNPSYYSL	NetMHCpan	106.8	122.5	1.147	129	0.217	213.697	155.456	0.727	120.49	198.25	122.5	106.8	188.4126249	229.1447967	231.3396105	261.9690589	M5	-0.028571429	0.457142857	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.217	129	89	10	0.112359551	10qB3	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	0.920101999	sgMsh2	cell line
chr1	172599080	172599080	CT	C	ENSMUST00000094303.5	5	ENSMUSG00000070504	FS	S/X	100	Fcrl6	ENSMUST00000094303.5:c.298del	ENSMUSP00000091861.4:p.Ser100ValfsTer28	H-2-Kb	9	13	0	IWISSSGLL	NA	SMM	188.847	NA	NA	128	0.289	318.891	NA	NA	NA	244.91	NA	603.1	NA	188.8469608	NA	392.8710251	M5	1.328571429	1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.297	128	0	0	NA	1qH3	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr1	173270231	173270231	A	G	ENSMUST00000213420.1	5	ENSMUSG00000049605	missense	S/G	19	Olfr418	ENSMUST00000213420.1:c.55A>G	ENSMUSP00000150427.1:p.Ser19Gly	H-2-Kb	9	4	8	FVFQGFSGF	FVFQGFSSF	NetMHCpan	196.3	191.2	0.974	184	0.114	310.099	338.26	1.091	338.26	307.51	191.2	196.3	350.8407252	312.6871254	338.259498	332.8511027	M5	0.471428571	1.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.1	184	0	0	NA	1qH3	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.424010138	sgMsh2	cell line
chr10	62751842	62751842	CT	C	ENSMUST00000020268.6	1	ENSMUSG00000020074	FS	R/X	848	Ccar1	ENSMUST00000020268.6:c.2542del	ENSMUSP00000020268.5:p.Arg848GlufsTer40	H-2-Kb	9	13	1	MILKMMMKL	NA	NetMHCpan	322.1	NA	NA	103	0.175	459.096	NA	NA	NA	352.93	NA	322.1	NA	657.8244329	NA	565.2622723	M5	0.785714286	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.166	103	87	0	0	10qB4	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	0.703856828	sgMsh2	cell line
chr10	23897365	23897365	T	C	ENSMUST00000041416.7	1	ENSMUSG00000037440	missense	Y/H	97	Vnn1	ENSMUST00000041416.7:c.289T>C	ENSMUSP00000040599.7:p.Tyr97His	H-2-Kb	9	7	5	TIYPHLEEI	TIYPYLEEI	NetMHCpan	162.8	59.8	0.367	56	0.232	280.695	187.481	0.668	155.05	490.72	59.8	162.8	228.6177783	285.1740477	219.9125427	276.216743	M5	-0.685714286	-0.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	56	864	237	0.274305556	10qA4	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr11	36008549	36008549	T	C	ENSMUST00000102801.7	5	ENSMUSG00000049336	missense	Y/C	2594	Tenm2	ENSMUST00000102801.7:c.7781A>G	ENSMUSP00000099865.1:p.Tyr2594Cys	H-2-Db	9	5	7	SVLNNACYL	SVLNNAYYL	NetMHCpan	29.4	22.1	0.752	138	0.384	58.079	41.36	0.712	16.41	35.69	22.1	29.4	60.62056782	80.46740575	79.53714539	98.30373071	M5	0.514285714	0.642857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.385	138	0	0	NA	11qA4	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	2	1	sgMsh2	cell line
chr10	129842856	129842856	C	T	ENSMUST00000205013.2	5	ENSMUSG00000049052	missense	R/Q	62	Olfr812	ENSMUST00000205013.2:c.185G>A	ENSMUSP00000145482.2:p.Arg62Gln	H-2-Db	9	8	4	FFLQNFSFI	FFLRNFSFI	SMM	44.835	37.811	0.843	198	0.242	70.678	55.803	0.79	56.07	79.9	200.3	202.3	37.8111599	44.83529174	55.53541224	61.45680804	M5	0.871428571	0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.247	198	0	0	NA	10qD3	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	sgMsh2	cell line
chr11	43556667	43556667	G	T	ENSMUST00000050574.6	1	ENSMUSG00000044707	missense	R/L	59	Ccnjl	ENSMUST00000050574.6:c.176G>T	ENSMUSP00000058111.6:p.Arg59Leu	H-2-Db	9	9	3	SALHLAIYL	SARHLAIYL	NetMHC	172.76	6022.1	34.858	49	0.204	214.407	4374.189	20.401	6022.1	172.76	8244.8	501.5	2082.667788	190.8182902	2726.277127	237.9961875	M5	1.885714286	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.213	49	4	0	0	11qB1.1	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	0.903141593	sgMsh2	cell line
chr11	58757857	58757857	G	A	ENSMUST00000215071.1	5	ENSMUSG00000107677	missense	S/N	64	Olfr316	ENSMUST00000215071.1:c.191G>A	ENSMUSP00000151136.1:p.Ser64Asn	H-2-Db	9	7	5	YFLLNQLSI	YFLLSQLSI	SMM	53.164	1078.003	20.277	457	0.09	141.124	3409.713	24.161	8143.16	200.67	5247	352.8	1078.003076	53.16428776	1572.425217	81.57742638	M5	1.157142857	1.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.084	457	0	0	NA	11qB1.3	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	0.356168516	sgMsh2	cell line
chr11	16883544	16883544	A	C	ENSMUST00000020329.12	1	ENSMUSG00000020122	missense	N/T	604	Egfr	ENSMUST00000020329.12:c.1811A>C	ENSMUSP00000020329.6:p.Asn604Thr	H-2-Db	9	6	6	IMGENTTLV	IMGENNTLV	NetMHC	212.83	726.56	3.414	137	0.197	410.09	685.788	1.672	726.56	212.83	1407.9	883	499.5972049	333.1347981	645.0152757	487.0460214	M5	-0.114285714	-0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.212	137	2	1	0.5	11qA2	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	0.898901492	sgMsh2	cell line
chr10	129501829	129501829	T	C	ENSMUST00000218901.1	NA	ENSMUSG00000044025	missense	F/S	315	Olfr790	ENSMUST00000218901.1:c.944T>C	ENSMUSP00000151759.1:p.Phe315Ser	H-2-Kb	8	13	2	ISFSSKNL	IFFSSKNL	NetMHCpan	18.5	115.8	6.259	68	0.221	19.094	83.126	4.354	110.95	18.52	115.8	18.5	45.89231861	19.66708524	55.30189331	20.68902384	M5	-0.457142857	-0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.213	68	0	0	NA	10qD3	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	0.903141593	sgMsh2	cell line
chr10	127170070	127170070	CT	C	ENSMUST00000006914.10	1	ENSMUSG00000006731	FS	F/X	302	B4galnt1	ENSMUST00000006914.10:c.907del	ENSMUSP00000006914.9:p.Tyr303ThrfsTer6	H-2-Kb	8	6	7	ASIRRFTL	ASIRRFYP	NetMHC	29	3440.11	118.624	125	0.28	210.968	4453.498	21.11	3440.11	29	1848.8	57.4	6176.465217	435.2512229	5466.885777	364.5356443	M5	0.085714286	0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.279	125	121	10	0.082644628	10qD3	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr10	129626025	129626025	A	G	ENSMUST00000204979.2	2	ENSMUSG00000095002	missense	L/P	12	Olfr798	ENSMUST00000204979.2:c.35T>C	ENSMUSP00000144716.1:p.Leu12Pro	H-2-Kb	8	5	7	SVSEFIPL	SVSEFILL	NetMHC	38.39	159.69	4.16	95	0.358	72.402	215.586	2.978	159.69	38.39	96.3	42.3	271.4813499	102.5038081	318.9627742	115.8083836	M5	1.342857143	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.329	95	0	0	NA	10qD3	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	sgMsh2	cell line
chr11	66094123	66094123	T	C	ENSMUST00000080665.9	5	ENSMUSG00000056752	missense	R/G	1207	Dnah9	ENSMUST00000080665.9:c.3619A>G	ENSMUSP00000079494.3:p.Arg1207Gly	H-2-Kb	8	10	2	VGQQVAPL	VRQQVAPL	SMM	66.182	315.312	4.764	82	0.195	74.627	1070.287	14.342	1743.62	66.89	2996.9	350.4	315.3116375	66.18201718	396.9538331	82.36448742	M5	0.114285714	0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.208	82	0	0	NA	11qB3	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	0.881941086	sgMsh2	cell line
chr10	129842856	129842856	C	T	ENSMUST00000205013.2	5	ENSMUSG00000049052	missense	R/Q	62	Olfr812	ENSMUST00000205013.2:c.185G>A	ENSMUSP00000145482.2:p.Arg62Gln	H-2-Kb	8	11	1	QNFSFIEI	RNFSFIEI	NetMHCpan	44.2	23.5	0.532	198	0.242	162.873	110.677	0.68	76.23	89.84	23.5	44.2	145.1242539	235.9065504	149.534017	312.4208431	M5	0.971428571	0.971428571	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.247	198	0	0	NA	10qD3	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	sgMsh2	cell line
chr11	34688463	34688463	A	T	ENSMUST00000093193.11	1	ENSMUSG00000020143	missense	L/M	708	Dock2	ENSMUST00000093193.11:c.2122T>A	ENSMUSP00000090884.5:p.Leu708Met	H-2-Kb	8	9	3	ATMAYKKL	ATLAYKKL	NetMHCpan	62.7	80.7	1.287	166	0.295	117.441	94.582	0.805	84.03	96.29	80.7	62.7	118.7790917	204.0515979	105.1332282	138.5925865	M5	-0.328571429	-0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.291	166	0	0	NA	11qA4	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr11	58757857	58757857	G	A	ENSMUST00000215071.1	5	ENSMUSG00000107677	missense	S/N	64	Olfr316	ENSMUST00000215071.1:c.191G>A	ENSMUSP00000151136.1:p.Ser64Asn	H-2-Kb	8	6	6	MYFLLNQL	MYFLLSQL	NetMHCpan	183.7	77.4	0.421	457	0.09	238.921	133.441	0.559	129.56	253.53	77.4	183.7	148.8469706	240.8463117	137.3219621	236.9954455	M5	0.842857143	0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.084	457	0	0	NA	11qB1.3	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	0.356168516	sgMsh2	cell line
chr11	57528173	57528173	A	T	ENSMUST00000020830.13	1	ENSMUSG00000020522	missense	D/V	53	Mfap3	ENSMUST00000020830.13:c.158A>T	ENSMUSP00000020830.7:p.Asp53Val	H-2-Kb	8	4	8	SAGSYSGV	SAGSYSGD	NetMHC	397.02	22519.42	56.721	121	0.215	446.118	12796.838	28.685	22519.42	397.02	29869.5	1113.8	3074.255792	459.9811133	2458.895091	432.2549746	M5	0.328571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.212	121	63	16	0.253968254	11qB1.3	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	0.898901492	sgMsh2	cell line
chr10	88905051	88905051	C	T	ENSMUST00000020255.7	1	ENSMUSG00000020062	missense	A/V	276	Slc5a8	ENSMUST00000020255.7:c.827C>T	ENSMUSP00000020255.6:p.Ala276Val	H-2-Kb	8	6	6	KSRLHVKL	KSRLHAKL	SMM	244.197	84.477	0.346	150	0.247	339.486	88.128	0.26	81.22	414.28	429	755.3	84.47729517	244.1968177	91.77829809	264.691503	M5	-0.085714286	-0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.269	150	0	0	NA	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr10	129321725	129321725	T	C	ENSMUST00000215503.1	5	ENSMUSG00000049573	missense	L/P	34	Olfr780	ENSMUST00000215503.1:c.101T>C	ENSMUSP00000149258.1:p.Leu34Pro	H-2-Kb	8	5	7	FLFITYPL	FLFITYLL	SMMPMBEC	248.165	683.502	2.754	172	0.221	274.394	824.79	3.006	1199.73	510.58	893.2	263.2	756.3799359	285.5880296	683.502331	248.1646968	M5	1.614285714	1.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.236	172	0	0	NA	10qD3	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr11	50237259	50237259	T	A	ENSMUST00000102772.3	1	ENSMUSG00000020377	missense	N/I	55	Ltc4s	ENSMUST00000102772.3:c.164A>T	ENSMUSP00000099833.3:p.Asn55Ile	H-2-Kb	8	11	1	ICSEYFPL	NCSEYFPL	SMMPMBEC	163.207	1944.196	11.912	45	0.244	262.12	3149.402	12.015	8197	536.95	3700.2	307.1	2598.603386	217.1400833	1944.195797	163.2074578	M5	0.271428571	0.371428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.239	45	2	0	0	11qB1.3	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr10	130472110	130472110	CA	C	ENSMUST00000164227.3	5	ENSMUSG00000091511	FS	L/X	753	Vmn2r87	ENSMUST00000164227.3:c.2258del	ENSMUSP00000129215.2:p.Leu753TrpfsTer25	H-2-Kb	8	15	0	ASLWLSWL	NA	SMM	312.421	NA	NA	312	0.215	407.641	NA	NA	NA	717.62	NA	457.4	NA	312.4208431	NA	357.8821189	M5	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.215	312	0	0	NA	10qD3	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	sgMsh2	cell line
chr10	130472110	130472110	CA	C	ENSMUST00000164227.3	5	ENSMUSG00000091511	FS	L/X	753	Vmn2r87	ENSMUST00000164227.3:c.2258del	ENSMUSP00000129215.2:p.Leu753TrpfsTer25	H-2-Kb	8	19	0	LSWLGTFL	NA	SMMPMBEC	307.426	NA	NA	312	0.215	420.694	NA	NA	NA	1101.66	NA	318.1	NA	523.2870654	NA	307.4255792	M5	1.085714286	1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.215	312	0	0	NA	10qD3	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	sgMsh2	cell line
chr11	34688463	34688463	A	T	ENSMUST00000093193.11	1	ENSMUSG00000020143	missense	L/M	708	Dock2	ENSMUST00000093193.11:c.2122T>A	ENSMUSP00000090884.5:p.Leu708Met	H-2-Kb	9	11	1	MAYKKLMTV	LAYKKLMTV	NetMHCpan	53.3	93.4	1.752	166	0.295	111.459	136.253	1.222	92.9	63.29	93.4	53.3	179.1059444	159.628341	191.9773533	191.9773533	M5	0.014285714	0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.291	166	0	0	NA	11qA4	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr10	129626025	129626025	A	G	ENSMUST00000204979.2	2	ENSMUSG00000095002	missense	L/P	12	Olfr798	ENSMUST00000204979.2:c.35T>C	ENSMUSP00000144716.1:p.Leu12Pro	H-2-Kb	9	4	8	TSVSEFIPL	TSVSEFILL	NetMHC	66.41	157	2.364	95	0.358	133.399	221.183	1.658	157	66.41	211.1	85.2	231.2650474	181.5975563	301.4740949	216.3963843	M5	1.342857143	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.329	95	0	0	NA	10qD3	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	sgMsh2	cell line
chr11	34688463	34688463	A	T	ENSMUST00000093193.11	1	ENSMUSG00000020143	missense	L/M	708	Dock2	ENSMUST00000093193.11:c.2122T>A	ENSMUSP00000090884.5:p.Leu708Met	H-2-Kb	9	3	9	IQQHFSATM	IQQHFSATL	NetMHC	108.3	43.99	0.406	166	0.295	432.806	302.966	0.7	43.99	108.3	87	183.1	518.9314595	682.5115418	629.8686601	853.5913393	M5	-0.242857143	-0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.291	166	0	0	NA	11qA4	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr10	88905051	88905051	C	T	ENSMUST00000020255.7	1	ENSMUSG00000020062	missense	A/V	276	Slc5a8	ENSMUST00000020255.7:c.827C>T	ENSMUSP00000020255.6:p.Ala276Val	H-2-Kb	9	11	1	VKLSLYVNL	AKLSLYVNL	NetMHC	134.67	484.91	3.601	150	0.247	176.876	519.155	2.935	484.91	134.67	658.9	183.1	507.1191374	170.6514568	531.1901339	192.4199068	M5	1.428571429	1.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.269	150	0	0	NA	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr10	129842856	129842856	C	T	ENSMUST00000205013.2	5	ENSMUSG00000049052	missense	R/Q	62	Olfr812	ENSMUST00000205013.2:c.185G>A	ENSMUSP00000145482.2:p.Arg62Gln	H-2-Kb	9	5	7	PMYFFLQNF	PMYFFLRNF	SMM	35.819	48.207	1.346	198	0.242	102.805	114.491	1.114	145.18	146.42	291.9	336.2	48.20698829	35.81871488	83.80115415	59.19022625	M5	0.557142857	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.247	198	0	0	NA	10qD3	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	sgMsh2	cell line
chr11	50237259	50237259	T	A	ENSMUST00000102772.3	1	ENSMUSG00000020377	missense	N/I	55	Ltc4s	ENSMUST00000102772.3:c.164A>T	ENSMUSP00000099833.3:p.Asn55Ile	H-2-Kb	9	10	2	VICSEYFPL	VNCSEYFPL	SMM	116.174	87.722	0.755	45	0.244	137.523	100.849	0.733	107.02	148.79	115.7	213.3	87.72229799	116.1742828	94.67820161	126.255411	M5	0.271428571	1.2	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.239	45	2	0	0	11qB1.3	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr11	61546578	61546578	A	C	ENSMUST00000179936.7	1	ENSMUSG00000001036	missense	I/S	56	Epn2	ENSMUST00000179936.7:c.167T>G	ENSMUSP00000136950.1:p.Ile56Ser	H-2-Kb	9	6	6	VAFSESMSM	VAFSEIMSM	NetMHCpan	123.9	82.3	0.664	79	0.266	145.532	154.465	1.061	140.62	155.51	82.3	123.9	168.310031	135.5532704	254.8296748	263.7849417	M5	0.1	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.265	79	62	15	0.241935484	11qB2	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr11	62219339	62219339	T	C	ENSMUST00000201364.3	5	ENSMUSG00000042331	missense	Y/H	1048	Specc1	ENSMUST00000201364.3:c.3142T>C	ENSMUSP00000143853.1:p.Tyr1048His	H-2-Kb	9	7	5	SVMQHVAQI	SVMQYVAQI	NetMHCpan	185.3	48.9	0.264	69	0.304	307.66	190.111	0.618	45.96	199.17	48.9	185.3	501.3141926	625.3310593	331.3217908	416.1500968	M5	0.314285714	0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.342	69	56	16	0.285714286	11qB2	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	2	1	sgMsh2	cell line
chr10	121615116	121615116	CA	C	ENSMUST00000039810.7	5	ENSMUSG00000034667	FS	F/X	126	Xpot	ENSMUST00000039810.7:c.378del	ENSMUSP00000043488.7:p.Phe126LeufsTer9	H-2-Kb	9	8	4	KFFLTSSQL	NA	NetMHC	253.95	NA	NA	96	0.292	400.763	NA	NA	NA	253.95	NA	453.1	NA	348.4255546	NA	544.816184	M5	0.657142857	0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.299	96	201	22	0.109452736	10qD2	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr10	117676081	117676081	A	G	ENSMUST00000020399.5	1	ENSMUSG00000020183	missense	Q/R	310	Cpm	ENSMUST00000020399.5:c.929A>G	ENSMUSP00000020399.5:p.Gln310Arg	H-2-Kb	9	6	6	IEYIKRVHL	IEYIKQVHL	SMMPMBEC	156.765	166.437	1.062	118	0.229	241.371	256.344	1.062	299.82	274.72	556.9	577.1	212.8678139	208.0223508	166.4370463	156.7653224	M5	-0.057142857	1.27E-16	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.241	118	1	1	1	10qD2	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr10	130472110	130472110	CA	C	ENSMUST00000164227.3	5	ENSMUSG00000091511	FS	L/X	753	Vmn2r87	ENSMUST00000164227.3:c.2258del	ENSMUSP00000129215.2:p.Leu753TrpfsTer25	H-2-Kb	9	9	3	GSWLWGASL	NA	NetMHCpan	270.2	NA	NA	312	0.215	374.862	NA	NA	NA	300.72	NA	270.2	NA	563.7804345	NA	449.0037829	M5	0.914285714	0.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.215	312	0	0	NA	10qD3	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	sgMsh2	cell line
chr11	58757857	58757857	G	A	ENSMUST00000215071.1	5	ENSMUSG00000107677	missense	S/N	64	Olfr316	ENSMUST00000215071.1:c.191G>A	ENSMUSP00000151136.1:p.Ser64Asn	H-2-Kb	9	5	7	PMYFLLNQL	PMYFLLSQL	SMM	69.841	60.969	0.873	457	0.09	256.406	183.625	0.716	298.82	430.35	478.1	884.5	60.9691303	69.84092778	68.43054518	82.46126636	M5	0.842857143	0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.084	457	0	0	NA	11qB1.3	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	0.356168516	sgMsh2	cell line
chr10	130472110	130472110	CA	C	ENSMUST00000164227.3	5	ENSMUSG00000091511	FS	L/X	753	Vmn2r87	ENSMUST00000164227.3:c.2258del	ENSMUSP00000129215.2:p.Leu753TrpfsTer25	H-2-Kb	9	17	0	LWLSWLGTF	NA	SMM	245.533	NA	NA	312	0.215	456.634	NA	NA	NA	499.03	NA	2307.2	NA	245.5330734	NA	414.2380608	M5	1.085714286	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.215	312	0	0	NA	10qD3	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	sgMsh2	cell line
chr11	95969851	95969851	T	G	ENSMUST00000013559.2	1	ENSMUSG00000013415	missense	S/R	359	Igf2bp1	ENSMUST00000013559.2:c.1075A>C	ENSMUSP00000013559.2:p.Ser359Arg	H-2-Db	9	8	4	AAMRLQSHL	AAMSLQSHL	SMM	336.217	330.842	0.984	126	0.19	466.447	489.283	1.049	583.59	561.66	681.7	531.5	330.8415143	336.2172565	394.9753567	401.39319	M5	-0.357142857	0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.192	126	58	12	0.206896552	11qD	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	0.814099464	sgMsh2	cell line
chr11	110158302	110158302	T	TA	ENSMUST00000044850.3	1	ENSMUSG00000041797	FS	-/X	226-227	Abca9	ENSMUST00000044850.3:c.678dup	ENSMUSP00000036338.3:p.Ile227TyrfsTer140	H-2-Kb	8	114	0	VSYWLGYL	NA	NetMHC	3.31	NA	NA	86	0.221	5.817	NA	NA	NA	3.31	NA	5.3	NA	6.334903447	NA	7.477217263	M5	0.414285714	0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.233	86	1	0	0	11qE1	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	0.987943621	sgMsh2	cell line
chr11	99003065	99003065	A	C	ENSMUST00000068031.7	1	ENSMUSG00000020914	missense	L/R	1001	Top2a	ENSMUST00000068031.7:c.3002T>G	ENSMUSP00000068896.7:p.Leu1001Arg	H-2-Kb	8	8	4	SMVRFDHV	SMVLFDHV	NetMHC	72.71	103.13	1.418	108	0.333	211.214	250.193	1.185	103.13	72.71	146.6	132.2	353.7854762	290.2284617	374.7485835	304.6070846	M5	0.271428571	0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.32	108	328	62	0.18902439	11qD	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr11	72058021	72058021	G	A	ENSMUST00000075258.12	1	ENSMUSG00000040543	missense	R/W	769	Pitpnm3	ENSMUST00000075258.12:c.2305C>T	ENSMUSP00000074737.6:p.Arg769Trp	H-2-Kb	8	9	3	VVWHWQDL	VVRHWQDL	NetMHCpan	164	1200.7	7.321	102	0.275	222.002	907.754	4.089	1202.31	270.69	1200.7	164	614.8086937	260.4593785	592.570463	183.5439188	M5	-0.571428571	-0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.265	102	2	0	0	11qB4	chr11-69590981-82929860	4	4	0	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr11	110158302	110158302	T	TA	ENSMUST00000044850.3	1	ENSMUSG00000041797	FS	-/X	226-227	Abca9	ENSMUST00000044850.3:c.678dup	ENSMUSP00000036338.3:p.Ile227TyrfsTer140	H-2-Kb	8	17	0	YFLLFTYI	NA	SMM	210.737	NA	NA	86	0.221	342.228	NA	NA	NA	471.77	NA	1021.9	NA	210.7366151	NA	212.686537	M5	2.242857143	2.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.233	86	1	0	0	11qE1	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	0.987943621	sgMsh2	cell line
chr11	110158302	110158302	T	TA	ENSMUST00000044850.3	1	ENSMUSG00000041797	FS	-/X	226-227	Abca9	ENSMUST00000044850.3:c.678dup	ENSMUSP00000036338.3:p.Ile227TyrfsTer140	H-2-Kb	8	8	5	TDFFYFLL	TDFFIFFC	SMMPMBEC	49.061	12756.749	260.016	86	0.221	73.637	14347.604	194.843	19893.09	528.74	14804	97.3	13891.20754	49.97352678	12756.74869	49.06140712	M5	1.6	1.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.233	86	1	0	0	11qE1	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	0.987943621	sgMsh2	cell line
chr11	110158302	110158302	T	TA	ENSMUST00000044850.3	1	ENSMUSG00000041797	FS	-/X	226-227	Abca9	ENSMUST00000044850.3:c.678dup	ENSMUSP00000036338.3:p.Ile227TyrfsTer140	H-2-Kb	8	7	6	ATDFFYFL	ATDFFIFF	SMM	109.079	2527.784	23.174	86	0.221	144.17	2322.439	16.109	5760.3	597.4	1689.7	163.1	2527.784229	109.0787117	2117.093311	125.2391179	M5	0.957142857	0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.233	86	1	0	0	11qE1	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	0.987943621	sgMsh2	cell line
chr11	117772845	117772845	T	C	ENSMUST00000026659.9	1	ENSMUSG00000025572	missense	I/V	514	Tmc6	ENSMUST00000026659.9:c.1540A>G	ENSMUSP00000026659.3:p.Ile514Val	H-2-Kb	8	10	2	LVLKMAVL	LILKMAVL	SMMPMBEC	395.13	281.67	0.713	80	0.287	457.257	401.56	0.878	565.93	825.08	490.7	423.9	312.4208431	490.6140712	281.6696149	395.1299959	M5	2.257142857	2.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.294	80	28	5	0.178571429	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr11	110154560	110154560	T	C	ENSMUST00000044850.3	1	ENSMUSG00000041797	missense	T/A	316	Abca9	ENSMUST00000044850.3:c.946A>G	ENSMUSP00000036338.3:p.Thr316Ala	H-2-Kb	9	10	2	IALSFLMSV	ITLSFLMSV	NetMHC	26.53	31.48	1.187	57	0.228	80.227	110.086	1.372	31.48	26.53	42.3	31.3	177.8729877	129.1546361	241.1293081	186.7454375	M5	2.128571429	2.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.225	57	1	1	1	11qE1	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	0.95402281	sgMsh2	cell line
chr11	110158302	110158302	T	TA	ENSMUST00000044850.3	1	ENSMUSG00000041797	FS	-/X	226-227	Abca9	ENSMUST00000044850.3:c.678dup	ENSMUSP00000036338.3:p.Ile227TyrfsTer140	H-2-Kb	9	6	7	VATDFFYFL	VATDFFIFF	NetMHCpan	19.8	177.7	8.975	86	0.221	55.872	174.795	3.128	300.65	27	177.7	19.8	142.2689086	84.74420308	171.8897579	113.5664369	M5	0.957142857	0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.233	86	1	0	0	11qE1	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	0.987943621	sgMsh2	cell line
chr11	116080661	116080661	TG	T	ENSMUST00000074628.12	1	ENSMUSG00000034341	FS	P/X	139	Wbp2	ENSMUST00000074628.12:c.417del	ENSMUSP00000074204.6:p.Asn140MetfsTer46	H-2-Kb	9	25	0	MSFPRQSPM	NA	NetMHCpan	33.3	NA	NA	58	0.224	66.159	NA	NA	NA	56.09	NA	33.3	NA	76.22720572	NA	85.35913393	M5	-1.042857143	-0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.234	58	134	4	0.029850746	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	0.992183722	sgMsh2	cell line
chr11	110158302	110158302	T	TA	ENSMUST00000044850.3	1	ENSMUSG00000041797	FS	-/X	226-227	Abca9	ENSMUST00000044850.3:c.678dup	ENSMUSP00000036338.3:p.Ile227TyrfsTer140	H-2-Kb	9	118	0	LGYLHPYRL	NA	NetMHCpan	27.7	NA	NA	86	0.221	108.333	NA	NA	NA	56.3	NA	27.7	NA	160.3651519	NA	178.7516256	M5	-0.614285714	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.233	86	1	0	0	11qE1	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	0.987943621	sgMsh2	cell line
chr11	67211360	67211360	C	A	ENSMUST00000124516.7	1	ENSMUSG00000056328	missense	R/S	826	Myh1	ENSMUST00000124516.7:c.2476C>A	ENSMUSP00000117569.1:p.Arg826Ser	H-2-Kb	9	6	6	IQYNVSAFM	IQYNVRAFM	NetMHC	125.35	144.71	1.154	221	0.262	385.659	420.869	1.091	144.71	125.35	131.9	140.2	830.0609824	631.1171763	697.02764	656.5230826	M5	0.728571429	0.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.265	221	0	0	NA	11qB3	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr11	116047690	116047690	T	C	ENSMUST00000021116.11	1	ENSMUSG00000020770	missense	F/L	40	Unk	ENSMUST00000021116.11:c.118T>C	ENSMUSP00000021116.5:p.Phe40Leu	H-2-Kb	9	3	9	QHYTYLKEL	QHYTYLKEF	NetMHC	157.48	600.28	3.812	88	0.239	176.351	480.118	2.723	600.28	157.48	601.2	194.9	266.1399065	157.8010905	359.9564831	208.0894201	M5	-0.442857143	-0.442857143	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.244	88	22	6	0.272727273	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr11	95969851	95969851	T	G	ENSMUST00000013559.2	1	ENSMUSG00000013415	missense	S/R	359	Igf2bp1	ENSMUST00000013559.2:c.1075A>C	ENSMUSP00000013559.2:p.Ser359Arg	H-2-Kb	9	8	4	AAMRLQSHL	AAMSLQSHL	NetMHC	159.08	222.94	1.401	126	0.19	409.595	316.523	0.773	222.94	159.08	226.5	212.3	406.5462879	606.8900259	544.816184	635.696763	M5	-0.357142857	0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.192	126	58	12	0.206896552	11qD	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	0.814099464	sgMsh2	cell line
chr11	87035223	87035223	T	C	ENSMUST00000020804.7	1	ENSMUSG00000061666	missense	T/A	299	Gdpd1	ENSMUST00000020804.7:c.895A>G	ENSMUSP00000020804.7:p.Thr299Ala	H-2-Kb	9	9	3	VMADYPTKL	VMTDYPTKL	NetMHCpan	134	233	1.739	78	0.244	178.725	248.628	1.391	288.51	222.06	233	134	258.8868552	177.8729877	238.3691237	179.5767056	M5	-0.771428571	0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.253	78	181	50	0.276243094	11qC	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr11	110158302	110158302	T	TA	ENSMUST00000044850.3	1	ENSMUSG00000041797	FS	-/X	226-227	Abca9	ENSMUST00000044850.3:c.678dup	ENSMUSP00000036338.3:p.Ile227TyrfsTer140	H-2-Kb	9	7	6	ATDFFYFLL	ATDFFIFFC	SMM	120.534	11145.768	92.47	86	0.221	148.653	11782.909	79.265	12420.05	230.73	14181.4	165.1	11145.76803	120.5341196	7555.270188	132.2056452	M5	1.6	1.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.233	86	1	0	0	11qE1	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	0.987943621	sgMsh2	cell line
chr11	69944246	69944246	A	G	ENSMUST00000018710.12	1	ENSMUSG00000018566	missense	M/T	380	Slc2a4	ENSMUST00000018710.12:c.1139T>C	ENSMUSP00000018710.6:p.Met380Thr	H-2-Kb	9	11	1	TSYVSIVAI	MSYVSIVAI	NetMHCpan	173.5	137.8	0.794	57	0.158	288.038	313.641	1.089	235.44	232.32	137.8	173.5	391.8411118	385.5760057	405.7420321	343.7557727	M5	2.442857143	2.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.173	57	0	0	NA	11qB3	chr11-69590981-82929860	4	4	0	0.99	4.197700362	NA	1	0.733537538	sgMsh2	cell line
chr11	90276799	90276799	T	C	ENSMUST00000004050.6	1	ENSMUSG00000003948	missense	V/A	218	Mmd	ENSMUST00000004050.6:c.653T>C	ENSMUSP00000004050.6:p.Val218Ala	H-2-Kb	9	8	4	AAAAHYYAI	AAAVHYYAI	NetMHCpan	202.7	163.1	0.805	67	0.254	362.424	227.256	0.627	215.67	347.18	163.1	202.7	238.8416155	377.6678362	305.6680173	419.0347115	M5	0.585714286	0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.259	67	102	33	0.323529412	11qC	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr11	110158302	110158302	T	TA	ENSMUST00000044850.3	1	ENSMUSG00000041797	FS	-/X	226-227	Abca9	ENSMUST00000044850.3:c.678dup	ENSMUSP00000036338.3:p.Ile227TyrfsTer140	H-2-Kb	9	12	1	YFLLCYFLL	NA	SMM	188.847	NA	NA	86	0.221	300.564	NA	NA	NA	354.95	NA	3495.6	NA	188.8469608	NA	246.1784313	M5	2.742857143	2.742857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.233	86	1	0	0	11qE1	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	0.987943621	sgMsh2	cell line
chr11	102061618	102061618	G	A	ENSMUST00000017458.10	1	ENSMUSG00000017314	missense	A/V	343	Mpp2	ENSMUST00000017458.10:c.1028C>T	ENSMUSP00000017458.3:p.Ala343Val	H-2-Kb	9	5	7	LIYEEVVRM	LIYEEVARM	NetMHCpan	384	183	0.477	33	0.152	422.457	242.216	0.573	185.13	506.32	183	384	299.3022626	431.6283877	304.9650004	413.2853397	M5	-0.357142857	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.207	33	10	2	0.2	11qD	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	0.877700985	sgMsh2	cell line
chr11	110158302	110158302	T	TA	ENSMUST00000044850.3	1	ENSMUSG00000041797	FS	-/X	226-227	Abca9	ENSMUST00000044850.3:c.678dup	ENSMUSP00000036338.3:p.Ile227TyrfsTer140	H-2-Kb	9	16	0	CYFLLFTYI	NA	SMM	217.325	NA	NA	86	0.221	424.914	NA	NA	NA	542.75	NA	1310	NA	217.325156	NA	307.0789168	M5	2.242857143	2.242857143	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.233	86	1	0	0	11qE1	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	0.987943621	sgMsh2	cell line
chr11	110158302	110158302	T	TA	ENSMUST00000044850.3	1	ENSMUSG00000041797	FS	-/X	226-227	Abca9	ENSMUST00000044850.3:c.678dup	ENSMUSP00000036338.3:p.Ile227TyrfsTer140	H-2-Kb	9	10	3	FFYFLLCYF	NA	SMM	249.523	NA	NA	86	0.221	468.89	NA	NA	NA	607.98	NA	6288	NA	249.5226649	NA	329.7995054	M5	1.871428571	2.457142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.233	86	1	0	0	11qE1	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	0.987943621	sgMsh2	cell line
chr11	114987405	114987405	T	G	ENSMUST00000045075.2	1	ENSMUSG00000034641	missense	T/P	94	Cd300ld	ENSMUST00000045075.2:c.280A>C	ENSMUSP00000047022.2:p.Thr94Pro	H-2-Kb	9	4	8	RDFIFTVPM	RDFIFTVTM	SMMPMBEC	413.285	752.056	1.82	274	0.197	465.648	927.044	1.991	2749.39	1529.58	988.9	447	865.1870294	484.2950164	752.0556875	413.2853397	M5	1.985714286	1.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.196	274	0	0	NA	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	0.83105987	sgMsh2	cell line
chr12	69190025	69190025	GT	G	ENSMUST00000021356.5	1	ENSMUSG00000020973	FS	T/X	770	Dnaaf2	ENSMUST00000021356.5:c.2308del	ENSMUSP00000021356.5:p.Thr770LeufsTer12	H-2-Db	9	5	7	SSLLNKLWF	SSLLNKTVV	NetMHC	102.74	8.12	0.079	284	0.18	148.467	27.724	0.187	8.12	102.74	17.2	273.1	38.24899249	138.2356312	40.41755147	158.6974688	M5	0.842857143	0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.188	284	110	21	0.190909091	12qC2	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.797139059	sgMsh2	cell line
chr11	119436427	119436427	C	A	ENSMUST00000093902.11	5	ENSMUSG00000070327	missense	L/I	1748	Rnf213	ENSMUST00000093902.11:c.5242C>A	ENSMUSP00000091429.5:p.Leu1748Ile	H-2-Db	9	6	6	IMMQSIVYM	IMMQSLVYM	NetMHC	142.34	112.63	0.791	96	0.281	335.388	275.754	0.822	112.63	142.34	183.7	208.8	367.8070082	461.9766231	406.9771255	477.0567004	M5	0.985714286	1.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.278	96	18	3	0.166666667	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr11	119436427	119436427	C	A	ENSMUST00000093902.11	5	ENSMUSG00000070327	missense	L/I	1748	Rnf213	ENSMUST00000093902.11:c.5242C>A	ENSMUSP00000091429.5:p.Leu1748Ile	H-2-Kb	8	11	1	IVYMSAFL	LVYMSAFL	NetMHC	5.56	23.25	4.182	96	0.281	11.11	43.603	3.925	23.25	5.56	27.4	8.2	71.57148034	15.09176382	59.80534499	14.0197413	M5	1.771428571	1.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.278	96	18	3	0.166666667	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr12	83712466	83712466	A	G	ENSMUST00000101225.1	5	ENSMUSG00000019969	missense	M/V	84	Psen1	ENSMUST00000101225.1:c.250A>G	ENSMUSP00000098786.1:p.Met84Val	H-2-Kb	8	9	3	VIVLFVPV	VIMLFVPV	NetMHC	18.88	11.4	0.604	206	0.131	26.078	18.634	0.715	11.4	18.88	27.1	61.2	20.45219854	26.40827294	16.81666993	25.74779247	M5	3.157142857	3.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.142	206	195	26	0.133333333	12qD1	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.602094395	sgMsh2	cell line
chr12	98275382	98275382	T	C	ENSMUST00000075072.5	1	ENSMUSG00000021886	missense	M/T	98	Gpr65	ENSMUST00000075072.5:c.293T>C	ENSMUSP00000074581.4:p.Met98Thr	H-2-Kb	8	6	6	VFFTYTNF	VFFTYMNF	SMMPMBEC	20.358	18.019	0.885	291	0.141	21.686	17.92	0.826	17.82	22.25	45.7	37.4	16.50973111	21.12224132	18.01938647	20.35822922	M5	0.314285714	0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.154	291	0	0	NA	12qE	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.652975612	sgMsh2	cell line
chr12	13231462	13231462	G	T	ENSMUST00000071103.9	1	ENSMUSG00000037149	missense	L/M	367	Ddx1	ENSMUST00000071103.9:c.1099C>A	ENSMUSP00000065987.8:p.Leu367Met	H-2-Kb	8	6	6	SQVRFMVL	SQVRFLVL	NetMHC	46.29	208.16	4.497	279	0.136	75.25	158.09	2.101	208.16	46.29	84.1	56.8	153.7234066	93.70008827	162.4575876	106.5957771	M5	1.271428571	1.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.142	279	484	87	0.179752066	12qA1.1	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.602094395	sgMsh2	cell line
chr12	29987228	29987228	C	T	ENSMUST00000122328.7	1	ENSMUSG00000020674	missense	S/F	335	Pxdn	ENSMUST00000122328.7:c.1004C>T	ENSMUSP00000113703.1:p.Ser335Phe	H-2-Kb	8	4	8	VTLRYLGF	VTLRYLGS	NetMHC	53.05	934.01	17.606	224	0.147	86.021	550.51	6.4	934.01	53.05	1084.5	55.7	112.3931906	137.9558114	167.0090478	116.3429308	M5	0.5	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.154	224	131	11	0.083969466	12qA2	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.652975612	sgMsh2	cell line
chr12	108361203	108361203	T	C	ENSMUST00000021684.5	1	ENSMUSG00000021259	missense	F/L	425	Cyp46a1	ENSMUST00000021684.5:c.1273T>C	ENSMUSP00000021684.4:p.Phe425Leu	H-2-Kb	8	11	1	LTYFPFSL	FTYFPFSL	NetMHCpan	22.8	31.8	1.395	148	0.149	102.142	85.132	0.833	67.05	60.82	31.8	22.8	103.2143305	143.4630303	134.1961326	157.666708	M5	0.714285714	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.147	148	1	0	0	12qF1	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.623294902	sgMsh2	cell line
chr12	75716177	75716177	C	A	ENSMUST00000021450.5	1	ENSMUSG00000021054	missense	G/V	410	Sgpp1	ENSMUST00000021450.5:c.1229G>T	ENSMUSP00000021450.4:p.Gly410Val	H-2-Kb	8	8	4	ITYVMVGF	ITYGMVGF	NetMHCpan	71.7	131.8	1.838	190	0.195	126.749	402.15	3.173	373.04	92.9	131.8	71.7	585.787365	231.6007706	431.2608157	160.597951	M5	1.528571429	1.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.188	190	36	3	0.083333333	12qC3	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.797139059	sgMsh2	cell line
chr12	24955384	24955384	T	C	ENSMUST00000110942.10	1	ENSMUSG00000020646	missense	V/A	386	Mboat2	ENSMUST00000110942.10:c.1157T>C	ENSMUSP00000106567.3:p.Val386Ala	H-2-Kb	8	5	7	LTFLTGAL	LTFLTGVL	SMMPMBEC	126.398	284.276	2.249	253	0.186	148.313	332.574	2.242	970.17	184.97	290.4	137.5	374.7485835	159.1255801	284.2758718	126.3979412	M5	1.485714286	1.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.184	253	155	39	0.251612903	12qA1.3	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.780178653	sgMsh2	cell line
chr12	69190025	69190025	GT	G	ENSMUST00000021356.5	1	ENSMUSG00000020973	FS	T/X	770	Dnaaf2	ENSMUST00000021356.5:c.2308del	ENSMUSP00000021356.5:p.Thr770LeufsTer12	H-2-Kb	8	14	0	KTYLTLTL	NA	NetMHCpan	98.5	NA	NA	284	0.18	204.29	NA	NA	NA	217.21	NA	98.5	NA	205.466016	NA	203.114066	M5	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.188	284	110	21	0.190909091	12qC2	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.797139059	sgMsh2	cell line
chr12	103104843	103104843	CA	C	ENSMUST00000101099.11	1	ENSMUSG00000021198	FS	Q/X	1330	Unc79	ENSMUST00000101099.11:c.3994del	ENSMUSP00000098659.5:p.Met1332CysfsTer59	H-2-Kb	8	32	0	ITLTWANT	NA	SMMPMBEC	112.912	NA	NA	261	0.126	220.203	NA	NA	NA	238.69	NA	942.4	NA	201.7158386	NA	112.911974	M5	-0.128571429	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.124	261	0	0	NA	12qE	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.525772571	sgMsh2	cell line
chr12	72556654	72556654	T	A	ENSMUST00000044352.7	1	ENSMUSG00000034501	missense	S/T	489	Pcnx4	ENSMUST00000044352.7:c.1465T>A	ENSMUSP00000038916.6:p.Ser489Thr	H-2-Kb	8	10	2	VTIGFTRA	VSIGFTRA	SMMPMBEC	216.641	129.64	0.598	212	0.127	273.909	146.801	0.536	79.74	275.71	178.1	397.8	163.9607892	272.1071791	129.6402918	216.6406749	M5	0.4	0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.131	212	33	7	0.212121212	12qC3	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.55545328	sgMsh2	cell line
chr12	79261656	79261656	C	T	ENSMUST00000021547.7	1	ENSMUSG00000066440	missense	D/N	1705	Zfyve26	ENSMUST00000021547.7:c.5113G>A	ENSMUSP00000021547.6:p.Asp1705Asn	H-2-Kb	8	6	6	IGFTLNEV	IGFTLDEV	NetMHCpan	303.9	1187.3	3.907	153	0.124	375.252	970.102	2.585	1333.11	383.96	1187.3	303.9	696.209588	367.908651	752.9046857	382.5956254	M5	0.385714286	0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.137	153	38	2	0.052631579	12qC3	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.580893888	sgMsh2	cell line
chr12	54685943	54685943	TG	T	ENSMUST00000161592.7	1	ENSMUSG00000054302	FS	H/X	127	Eapp	ENSMUST00000161592.7:c.381del	ENSMUSP00000123698.1:p.His127GlnfsTer52	H-2-Kb	8	53	0	SLFQTVML	NA	SMMPMBEC	306.719	NA	NA	181	0.298	372.068	NA	NA	NA	617.01	NA	379.6	NA	364.5356443	NA	306.71852	M5	1.757142857	1.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.305	181	247	66	0.267206478	12qC1	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	2	1	sgMsh2	cell line
chr12	83712466	83712466	A	G	ENSMUST00000101225.1	5	ENSMUSG00000019969	missense	M/V	84	Psen1	ENSMUST00000101225.1:c.250A>G	ENSMUSP00000098786.1:p.Met84Val	H-2-Kb	8	11	1	VLFVPVTL	MLFVPVTL	NetMHCpan	144	452.2	3.14	206	0.131	238.949	507.964	2.126	2314.13	621.55	452.2	144	518.4895408	243.0748352	497.4391928	234.8226582	M5	2.357142857	2.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.142	206	195	26	0.133333333	12qD1	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.602094395	sgMsh2	cell line
chr12	31708932	31708932	A	G	ENSMUST00000236002.1	NA	ENSMUSG00000044067	missense	I/T	397	Gpr22	ENSMUST00000236002.1:c.1190T>C	ENSMUSP00000158030.1:p.Ile397Thr	H-2-Kb	8	8	4	GTTTFHPL	GTTIFHPL	SMMPMBEC	181.443	200.789	1.107	372	0.204	344.511	294.142	0.854	1035.85	893.41	338.4	454.2	249.8848923	234.8226582	200.7890385	181.4429089	M5	-0.042857143	-0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.206	372	0	0	NA	12qA3	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.873460883	sgMsh2	cell line
chr12	98275382	98275382	T	C	ENSMUST00000075072.5	1	ENSMUSG00000021886	missense	M/T	98	Gpr65	ENSMUST00000075072.5:c.293T>C	ENSMUSP00000074581.4:p.Met98Thr	H-2-Kb	9	5	7	SVFFTYTNF	SVFFTYMNF	NetMHCpan	31	33.7	1.087	291	0.141	50.82	51.291	1.009	31.09	34.48	33.7	31	68.88267433	67.15989369	103.5738214	93.37916798	M5	0.314285714	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.154	291	0	0	NA	12qE	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.652975612	sgMsh2	cell line
chr12	31709410	31709410	T	C	ENSMUST00000236002.1	NA	ENSMUSG00000044067	missense	S/G	238	Gpr22	ENSMUST00000236002.1:c.712A>G	ENSMUSP00000158030.1:p.Ser238Gly	H-2-Kb	9	9	3	STGEYYTEL	STSEYYTEL	NetMHC	37.25	32.97	0.885	288	0.181	75.815	105.246	1.388	32.97	37.25	31.7	45.4	181.1798935	108.9205937	177.521108	106.2306894	M5	-0.985714286	-0.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.184	288	0	0	NA	12qA3	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.780178653	sgMsh2	cell line
chr12	13231462	13231462	G	T	ENSMUST00000071103.9	1	ENSMUSG00000037149	missense	L/M	367	Ddx1	ENSMUST00000071103.9:c.1099C>A	ENSMUSP00000065987.8:p.Leu367Met	H-2-Kb	9	5	7	LSQVRFMVL	LSQVRFLVL	NetMHC	73.6	226.78	3.081	279	0.136	164.159	216.007	1.316	226.78	73.6	177.6	125.9	239.9440583	224.9624328	205.2343263	202.4184057	M5	1.271428571	1.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.142	279	484	87	0.179752066	12qA1.1	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.602094395	sgMsh2	cell line
chr11	119436427	119436427	C	A	ENSMUST00000093902.11	5	ENSMUSG00000070327	missense	L/I	1748	Rnf213	ENSMUST00000093902.11:c.5242C>A	ENSMUSP00000091429.5:p.Leu1748Ile	H-2-Kb	9	9	3	QSIVYMSAF	QSLVYMSAF	NetMHC	98.57	99.5	1.009	96	0.281	224.554	229.185	1.021	99.5	98.57	292.6	260.8	194.5852873	193.6912491	263.7849417	255.4171179	M5	1.871428571	1.871428571	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.278	96	18	3	0.166666667	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr11	120134832	120134832	A	G	ENSMUST00000103018.10	1	ENSMUSG00000061306	missense	M/T	226	Slc38a10	ENSMUST00000103018.10:c.677T>C	ENSMUSP00000099307.4:p.Met226Thr	H-2-Kb	9	11	1	TSSIFASSL	MSSIFASSL	NetMHCpan	80.7	63.8	0.791	113	0.186	321.872	325.304	1.011	80.3	100.18	63.8	80.7	570.3087043	561.1900987	641.5787927	543.5631415	M5	1.5	1.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.19	113	74	24	0.324324324	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	0.805619261	sgMsh2	cell line
chr12	84106461	84106461	G	T	ENSMUST00000056822.3	1	ENSMUSG00000043487	missense	G/V	159	Acot6	ENSMUST00000056822.3:c.476G>T	ENSMUSP00000056131.3:p.Gly159Val	H-2-Kb	9	11	1	VIIDLYGSI	GIIDLYGSI	NetMHCpan	77.9	1628.7	20.908	214	0.14	151.163	1429.64	9.458	2254.44	116.01	1628.7	77.9	1230.580418	226.5217979	933.7916798	186.3159349	M5	0.971428571	1.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.142	214	0	0	NA	12qD1	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.602094395	sgMsh2	cell line
chr12	31547124	31547124	T	C	ENSMUST00000001253.7	1	ENSMUSG00000020651	missense	N/S	248	Slc26a4	ENSMUST00000001253.7:c.743A>G	ENSMUSP00000001253.7:p.Asn248Ser	H-2-Kb	9	5	7	VSTKNYSGI	VSTKNYNGI	NetMHC	120.76	277.9	2.301	157	0.134	269.151	316.632	1.176	277.9	120.76	586.2	300.6	296.558243	258.8868552	336.7053368	279.4151821	M5	-0.871428571	-0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.144	157	0	0	NA	12qA2	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.610574598	sgMsh2	cell line
chr12	69190025	69190025	GT	G	ENSMUST00000021356.5	1	ENSMUSG00000020973	FS	T/X	770	Dnaaf2	ENSMUST00000021356.5:c.2308del	ENSMUSP00000021356.5:p.Thr770LeufsTer12	H-2-Kb	9	11	1	LWFKTYLTL	NA	SMM	52.736	NA	NA	284	0.18	87.638	NA	NA	NA	123.24	NA	86.1	NA	52.73634174	NA	89.17641311	M5	0.542857143	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.188	284	110	21	0.190909091	12qC2	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.797139059	sgMsh2	cell line
chr12	72556654	72556654	T	A	ENSMUST00000044352.7	1	ENSMUSG00000034501	missense	S/T	489	Pcnx4	ENSMUST00000044352.7:c.1465T>A	ENSMUSP00000038916.6:p.Ser489Thr	H-2-Kb	9	10	2	VTIGFTRAF	VSIGFTRAF	NetMHC	135.99	77.66	0.571	212	0.127	241.68	150.693	0.624	77.66	135.99	132.3	200.8	169.0869148	282.5595563	216.3963843	351.7628732	M5	0.9	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.131	212	33	7	0.212121212	12qC3	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.55545328	sgMsh2	cell line
chr11	119436427	119436427	C	A	ENSMUST00000093902.11	5	ENSMUSG00000070327	missense	L/I	1748	Rnf213	ENSMUST00000093902.11:c.5242C>A	ENSMUSP00000091429.5:p.Leu1748Ile	H-2-Kb	9	10	2	SIVYMSAFL	SLVYMSAFL	NetMHC	139.34	965.14	6.927	96	0.281	324.272	1119.483	3.452	965.14	139.34	728.7	275.2	1273.82568	373.3447082	1582.158541	547.3309412	M5	1.771428571	1.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.278	96	18	3	0.166666667	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr12	75716177	75716177	C	A	ENSMUST00000021450.5	1	ENSMUSG00000021054	missense	G/V	410	Sgpp1	ENSMUST00000021450.5:c.1229G>T	ENSMUSP00000021450.4:p.Gly410Val	H-2-Kb	9	11	1	VMVGFSITF	GMVGFSITF	SMM	93.349	507.119	5.433	190	0.195	171.911	1429.349	8.314	2096.18	191.68	3962.6	381.5	507.1191374	93.34907095	762.5178243	152.1423079	M5	1.771428571	2.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.188	190	36	3	0.083333333	12qC3	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.797139059	sgMsh2	cell line
chr12	55707969	55707969	A	G	ENSMUST00000085385.6	1	ENSMUSG00000021027	missense	L/S	1179	Ralgapa1	ENSMUST00000085385.6:c.3536T>C	ENSMUSP00000082503.5:p.Leu1179Ser	H-2-Kb	9	4	8	YNIMHCGSL	YNIMHCGLL	NetMHCpan	97.8	114.6	1.172	199	0.146	248.131	188.429	0.759	147.64	214.91	114.6	97.8	277.4022632	379.4110717	229.2186762	281.3519957	M5	1.185714286	1.185714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.141	199	47	9	0.191489362	12qC1	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.597854294	sgMsh2	cell line
chr12	98275382	98275382	T	C	ENSMUST00000075072.5	1	ENSMUSG00000021886	missense	M/T	98	Gpr65	ENSMUST00000075072.5:c.293T>C	ENSMUSP00000074581.4:p.Met98Thr	H-2-Kb	9	11	1	TNFYSSTAF	MNFYSSTAF	SMM	318.5	323.676	1.016	291	0.141	365.539	317.878	0.87	312.08	327.2	253.8	411.6	323.6756285	318.5004131	476.7053215	403.8778168	M5	0.542857143	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.154	291	0	0	NA	12qE	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.652975612	sgMsh2	cell line
chr12	24955384	24955384	T	C	ENSMUST00000110942.10	1	ENSMUSG00000020646	missense	V/A	386	Mboat2	ENSMUST00000110942.10:c.1157T>C	ENSMUSP00000106567.3:p.Val386Ala	H-2-Kb	9	5	7	LTFLTGALM	LTFLTGVLM	NetMHC	354.25	977.61	2.76	253	0.186	486.696	929.583	1.91	977.61	354.25	1440.3	432.5	780.0276543	540.8913049	881.5561915	650.5040428	M5	1.857142857	1.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.184	253	155	39	0.251612903	12qA1.3	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.780178653	sgMsh2	cell line
chr12	51999859	51999859	T	G	ENSMUST00000021339.7	1	ENSMUSG00000020956	missense	N/H	66	Dtd2	ENSMUST00000021339.7:c.196A>C	ENSMUSP00000021339.7:p.Asn66His	H-2-Kb	9	6	6	VNTLLHVKL	VNTLLNVKL	NetMHCpan	212.6	1257.5	5.915	86	0.233	402.088	1117.492	2.779	1647.25	460.42	1257.5	212.6	977.4847712	462.4981501	708.3534281	343.7557727	M5	1.114285714	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.244	86	112	17	0.151785714	12qC1	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	2	1	sgMsh2	cell line
chr11	119436427	119436427	C	A	ENSMUST00000093902.11	5	ENSMUSG00000070327	missense	L/I	1748	Rnf213	ENSMUST00000093902.11:c.5242C>A	ENSMUSP00000091429.5:p.Leu1748Ile	H-2-Kb	9	6	6	IMMQSIVYM	IMMQSLVYM	NetMHCpan	229.8	181.2	0.789	96	0.281	384.492	252.183	0.656	330.56	519.93	181.2	229.8	248.9487787	396.378418	255.4171179	372.6061339	M5	0.985714286	1.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.278	96	18	3	0.166666667	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr13	75878849	75878849	T	G	ENSMUST00000022078.11	1	ENSMUSG00000021589	missense	K/N	468	Rhobtb3	ENSMUST00000022078.11:c.1404A>C	ENSMUSP00000022078.5:p.Lys468Asn	H-2-Db	9	7	5	YGVSNETFL	YGVSKETFL	NetMHC	4.07	552.12	135.656	139	0.295	38.329	1708.94	44.587	552.12	4.07	1286.7	11.1	2131.179353	65.55714019	2236.505652	66.61468828	M5	0.328571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.302	139	90	28	0.311111111	13qC1	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr14	3225359	3225359	TG	T	ENSMUST00000225885.1	NA	ENSMUSG00000096039	FS	L/X	15	D830030K20Rik	ENSMUST00000225885.1:c.46del	ENSMUSP00000153088.1:p.Glu16AsnfsTer8	H-2-Db	9	8	5	GGILNFTYM	NA	NetMHC	8.49	NA	NA	289	0.042	23.482	NA	NA	NA	8.49	NA	11.6	NA	38.42554182	NA	35.36470177	M5	1.071428571	1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0415	289	0	0	NA	14qA1	chr14-3072210-6875339	1.74068474	1.74068474	0	0.99	4.197700362	NA	1	0.175964207	sgMsh2	cell line
chr12	119190648	119190648	C	T	ENSMUST00000026360.8	1	ENSMUSG00000025321	missense	C/Y	218	Itgb8	ENSMUST00000026360.8:c.653G>A	ENSMUSP00000026360.8:p.Cys218Tyr	H-2-Db	9	4	8	CSDYNLDYM	CSDYNLDCM	NetMHCpan	180.4	1458	8.082	132	0.129	201.211	1225.087	6.089	1341.97	254.97	1458	180.4	1108.204731	197.9793983	1001.313335	204.4419431	M5	-1.057142857	-0.9	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.15	132	0	0	NA	12qF2	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.636015206	sgMsh2	cell line
chr12	111097527	111097527	T	A	ENSMUST00000116388.3	1	ENSMUSG00000037896	missense	F/I	87	Rcor1	ENSMUST00000116388.3:c.259T>A	ENSMUSP00000112089.3:p.Phe87Ile	H-2-Db	9	3	9	ADLPNFTPI	ADLPNFTPF	SMM	152.272	557.982	3.664	265	0.155	289.055	1381.294	4.779	4602.14	434.55	2076.2	395.9	557.9817569	152.2719818	686.3885023	182.2090736	M5	0.528571429	0.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.161	265	133	23	0.172932331	12qF1	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.682656321	sgMsh2	cell line
chr13	21754253	21754253	A	G	ENSMUST00000091709.2	NA	ENSMUSG00000095217	missense	K/R	44	H2bc15	ENSMUST00000091709.2:c.131A>G	ENSMUSP00000089301.2:p.Lys44Arg	H-2-Kb	8	6	6	SVYVYRVL	SVYVYKVL	NetMHC	4	6.66	1.665	134	0.269	7.033	12.062	1.715	6.66	4	7.5	5.5	17.69049561	8.565249141	16.6241711	9.051905263	M5	1.328571429	1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.267	134	9	3	0.333333333	13qA3.1	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr14	3225359	3225359	TG	T	ENSMUST00000225885.1	NA	ENSMUSG00000096039	FS	L/X	15	D830030K20Rik	ENSMUST00000225885.1:c.46del	ENSMUSP00000153088.1:p.Glu16AsnfsTer8	H-2-Kb	8	11	2	LNFTYMRI	NA	NetMHCpan	7.1	NA	NA	289	0.042	22.296	NA	NA	NA	10.65	NA	7.1	NA	37.21688324	NA	33.94220093	M5	-0.114285714	-0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0415	289	0	0	NA	14qA1	chr14-3072210-6875339	1.74068474	1.74068474	0	0.99	4.197700362	NA	1	0.175964207	sgMsh2	cell line
chr12	117974938	117974938	G	A	ENSMUST00000084806.6	1	ENSMUSG00000018581	missense	A/V	3265	Dnah11	ENSMUST00000084806.6:c.9794C>T	ENSMUSP00000081867.6:p.Ala3265Val	H-2-Kb	8	7	5	KSFAVAGL	KSFAAAGL	NetMHC	11.66	16.83	1.443	133	0.15	23.502	30.038	1.278	16.83	11.66	34.2	31.4	28.6906244	22.52890066	31.38629122	24.47597495	M5	1.885714286	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.154	133	0	0	NA	12qF2	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.652975612	sgMsh2	cell line
chr14	29988224	29988224	G	T	ENSMUST00000224797.1	NA	ENSMUSG00000015971	missense	R/M	316	Actr8	ENSMUST00000224797.1:c.947G>T	ENSMUSP00000153076.1:p.Arg316Met	H-2-Kb	8	9	3	VSMCFYWL	VSRCFYWL	NetMHCpan	18	44.3	2.461	167	0.162	18.823	33.596	1.785	38.96	18.69	44.3	18	19.57672319	18.95570756	28.23189304	19.26371303	M5	1.142857143	1.2	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.178	167	47	11	0.234042553	14qB	chr14-7006943-52779282	4	2	2	0.99	4.197700362	NA	1	0.754738045	sgMsh2	cell line
chr13	119455737	119455737	CT	C	ENSMUST00000026520.13	1	ENSMUSG00000025451	FS	F/X	353	Paip1	ENSMUST00000026520.13:c.1062del	ENSMUSP00000026520.7:p.Pro355GlnfsTer88	H-2-Kb	8	65	0	TSFFFFFF	NA	SMMPMBEC	29.562	NA	NA	88	0.25	48.105	NA	NA	NA	60.34	NA	73.9	NA	35.87071224	NA	29.56242117	M5	2.285714286	2.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.261	88	420	67	0.15952381	13qD2.3	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr14	30565598	30565598	A	C	ENSMUST00000022529.7	1	ENSMUSG00000021957	missense	D/A	183	Tkt	ENSMUST00000022529.7:c.548A>C	ENSMUSP00000022529.6:p.Asp183Ala	H-2-Kb	8	8	4	AIFAINRL	AIFDINRL	NetMHCpan	63.2	123.2	1.949	70	0.343	133.004	297.159	2.234	429.52	121.55	123.2	63.2	314.5864409	164.7175978	279.7306149	144.4574685	M5	1.342857143	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.365	70	1429	311	0.21763471	14qB	chr14-7006943-52779282	4	2	2	0.99	4.197700362	NA	2	1	sgMsh2	cell line
chr13	119455737	119455737	CT	C	ENSMUST00000026520.13	1	ENSMUSG00000025451	FS	F/X	353	Paip1	ENSMUST00000026520.13:c.1062del	ENSMUSP00000026520.7:p.Pro355GlnfsTer88	H-2-Kb	8	70	0	FFFFFFFL	NA	SMM	6.277	NA	NA	88	0.25	74.217	NA	NA	NA	140.16	NA	795.6	NA	6.276824703	NA	8.274466462	M5	2.942857143	2.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.261	88	420	67	0.15952381	13qD2.3	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr13	54221267	54221267	TC	T	ENSMUST00000038101.3	1	ENSMUSG00000034987	FS	S/X	374	Hrh2	ENSMUST00000038101.3:c.1122del	ENSMUSP00000038170.3:p.Phe375SerfsTer53	H-2-Kb	8	26	0	SNHHYISV	NA	NetMHCpan	84.2	NA	NA	91	0.165	192.438	NA	NA	NA	148.97	NA	84.2	NA	235.9065504	NA	249.310173	M5	-0.471428571	-0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.19	91	0	0	NA	13qB1	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	0.805619261	sgMsh2	cell line
chr13	119455737	119455737	CT	C	ENSMUST00000026520.13	1	ENSMUSG00000025451	FS	F/X	353	Paip1	ENSMUST00000026520.13:c.1062del	ENSMUSP00000026520.7:p.Pro355GlnfsTer88	H-2-Kb	8	66	0	SFFFFFFF	NA	SMM	56.33	NA	NA	88	0.25	127.006	NA	NA	NA	193.93	NA	806.2	NA	56.33003227	NA	60.08139392	M5	2.8	2.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.261	88	420	67	0.15952381	13qD2.3	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr13	119455737	119455737	CT	C	ENSMUST00000026520.13	1	ENSMUSG00000025451	FS	F/X	353	Paip1	ENSMUST00000026520.13:c.1062del	ENSMUSP00000026520.7:p.Pro355GlnfsTer88	H-2-Kb	8	77	0	LKFRYGDL	NA	SMMPMBEC	103.452	NA	NA	88	0.25	175.557	NA	NA	NA	228.16	NA	542.1	NA	122.9532464	NA	103.4522641	M5	-1	-1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.261	88	420	67	0.15952381	13qD2.3	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr14	3225359	3225359	TG	T	ENSMUST00000225885.1	NA	ENSMUSG00000096039	FS	L/X	15	D830030K20Rik	ENSMUST00000225885.1:c.46del	ENSMUSP00000153088.1:p.Glu16AsnfsTer8	H-2-Kb	8	9	4	GILNFTYM	NA	NetMHC	252.86	NA	NA	289	0.042	291.618	NA	NA	NA	252.86	NA	283.5	NA	390.6069803	NA	299.7367541	M5	1.071428571	1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0415	289	0	0	NA	14qA1	chr14-3072210-6875339	1.74068474	1.74068474	0	0.99	4.197700362	NA	1	0.175964207	sgMsh2	cell line
chr13	22293541	22293541	T	C	ENSMUST00000228382.1	NA	ENSMUSG00000069295	missense	S/P	117	Vmn1r196	ENSMUST00000228382.1:c.349T>C	ENSMUSP00000154358.1:p.Ser117Pro	H-2-Kb	8	9	3	RAPWWGRL	RASWWGRL	NetMHCpan	195.9	896.8	4.578	222	0.185	341.715	1061.965	3.108	1423.61	271.58	896.8	195.9	1129.11974	421.444121	994.8096742	411.8508816	M5	-0.385714286	-0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.186	222	0	0	NA	13qA3.1	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	0.788658856	sgMsh2	cell line
chr13	116910900	116910900	A	G	ENSMUST00000022239.7	5	ENSMUSG00000021725	missense	L/P	251	Parp8	ENSMUST00000022239.7:c.752T>C	ENSMUSP00000022239.6:p.Leu251Pro	H-2-Kb	8	8	4	IVRPHCSL	IVRLHCSL	SMM	192.637	101.097	0.525	160	0.231	278.151	113.701	0.409	111.86	291	203	380.5	101.0974031	192.6371303	115.5420317	265.3016799	M5	0.057142857	0.157142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.24	160	10	2	0.2	13qD2.3	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr13	119455737	119455737	CT	C	ENSMUST00000026520.13	1	ENSMUSG00000025451	FS	F/X	353	Paip1	ENSMUST00000026520.13:c.1062del	ENSMUSP00000026520.7:p.Pro355GlnfsTer88	H-2-Kb	8	67	0	FFFFFFFF	NA	SMM	102.033	NA	NA	88	0.25	315.835	NA	NA	NA	527.74	NA	4102.8	NA	102.0328459	NA	103.9297781	M5	2.8	2.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.261	88	420	67	0.15952381	13qD2.3	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr13	119455737	119455737	CT	C	ENSMUST00000026520.13	1	ENSMUSG00000025451	FS	F/X	353	Paip1	ENSMUST00000026520.13:c.1062del	ENSMUSP00000026520.7:p.Pro355GlnfsTer88	H-2-Kb	8	68	0	FFFFFFFF	NA	SMM	102.033	NA	NA	88	0.25	315.835	NA	NA	NA	527.74	NA	4102.8	NA	102.0328459	NA	103.9297781	M5	2.8	2.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.261	88	420	67	0.15952381	13qD2.3	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr13	119455737	119455737	CT	C	ENSMUST00000026520.13	1	ENSMUSG00000025451	FS	F/X	353	Paip1	ENSMUST00000026520.13:c.1062del	ENSMUSP00000026520.7:p.Pro355GlnfsTer88	H-2-Kb	8	69	0	FFFFFFFF	NA	SMM	102.033	NA	NA	88	0.25	315.835	NA	NA	NA	527.74	NA	4102.8	NA	102.0328459	NA	103.9297781	M5	2.8	2.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.261	88	420	67	0.15952381	13qD2.3	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr13	119455737	119455737	CT	C	ENSMUST00000026520.13	1	ENSMUSG00000025451	FS	F/X	353	Paip1	ENSMUST00000026520.13:c.1062del	ENSMUSP00000026520.7:p.Pro355GlnfsTer88	H-2-Kb	8	72	0	FFFFFLKF	NA	SMMPMBEC	290.228	NA	NA	88	0.25	434.144	NA	NA	NA	548.59	NA	1959.2	NA	319.6980594	NA	290.2284617	M5	1.985714286	1.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.261	88	420	67	0.15952381	13qD2.3	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr14	23436016	23436016	TA	T	ENSMUST00000188285.6	1	ENSMUSG00000063142	FS	Y/X	680	Kcnma1	ENSMUST00000188285.6:c.2038del	ENSMUSP00000140275.1:p.Tyr680ThrfsTer31	H-2-Kb	8	8	4	AFFTARPV	NA	SMM	285.588	NA	NA	62	0.419	464.476	NA	NA	NA	585.6	NA	996.8	NA	285.5880296	NA	343.3523309	M5	0.685714286	0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.447	62	0	0	NA	14qA3	chr14-7006943-52779282	4	2	2	0.99	4.197700362	NA	2	1	sgMsh2	cell line
chr13	119455737	119455737	CT	C	ENSMUST00000026520.13	1	ENSMUSG00000025451	FS	F/X	353	Paip1	ENSMUST00000026520.13:c.1062del	ENSMUSP00000026520.7:p.Pro355GlnfsTer88	H-2-Kb	9	65	0	TSFFFFFFF	NA	SMM	30.769	NA	NA	88	0.25	42.356	NA	NA	NA	52.26	NA	101.5	NA	30.76876041	NA	32.4526376	M5	2.8	2.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.261	88	420	67	0.15952381	13qD2.3	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr14	29988224	29988224	G	T	ENSMUST00000224797.1	NA	ENSMUSG00000015971	missense	R/M	316	Actr8	ENSMUST00000224797.1:c.947G>T	ENSMUSP00000153076.1:p.Arg316Met	H-2-Kb	9	9	3	VSMCFYWLM	VSRCFYWLM	SMM	22.086	32.742	1.483	167	0.162	24.996	45.085	1.804	100.09	57.04	51.6	26.1	32.74236157	22.08564057	38.57003207	23.89186213	M5	1.528571429	1.528571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.178	167	47	11	0.234042553	14qB	chr14-7006943-52779282	4	2	2	0.99	4.197700362	NA	1	0.754738045	sgMsh2	cell line
chr13	119455737	119455737	CT	C	ENSMUST00000026520.13	1	ENSMUSG00000025451	FS	F/X	353	Paip1	ENSMUST00000026520.13:c.1062del	ENSMUSP00000026520.7:p.Pro355GlnfsTer88	H-2-Kb	9	33	0	SMMRWTQKL	NA	NetMHC	70.92	NA	NA	88	0.25	147.628	NA	NA	NA	70.92	NA	74.4	NA	220.8564057	NA	227.1171867	M5	-1.114285714	-0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.261	88	420	67	0.15952381	13qD2.3	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr13	67542395	67542395	TA	T	ENSMUST00000181892.8	1	ENSMUSG00000095432	FS	Y/X	249	Zfp748	ENSMUST00000181892.8:c.745del	ENSMUSP00000137928.1:p.Tyr249ThrfsTer47	H-2-Kb	9	44	0	VAMPFVHSI	NA	NetMHCpan	32.9	NA	NA	169	0.213	254.832	NA	NA	NA	98.41	NA	32.9	NA	411.2538721	NA	441.8247089	M5	1.114285714	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.217	169	42	5	0.119047619	13qB3	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	0.920101999	sgMsh2	cell line
chr13	54221267	54221267	TC	T	ENSMUST00000038101.3	1	ENSMUSG00000034987	FS	S/X	374	Hrh2	ENSMUST00000038101.3:c.1122del	ENSMUSP00000038170.3:p.Phe375SerfsTer53	H-2-Kb	9	26	0	SNHHYISVL	NA	NetMHCpan	68.7	NA	NA	91	0.165	178.271	NA	NA	NA	141.14	NA	68.7	NA	229.67303	NA	215.4021332	M5	0.571428571	0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.19	91	0	0	NA	13qB1	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	0.805619261	sgMsh2	cell line
chr13	119455737	119455737	CT	C	ENSMUST00000026520.13	1	ENSMUSG00000025451	FS	F/X	353	Paip1	ENSMUST00000026520.13:c.1062del	ENSMUSP00000026520.7:p.Pro355GlnfsTer88	H-2-Kb	9	66	0	SFFFFFFFF	NA	SMM	43.262	NA	NA	88	0.25	103.032	NA	NA	NA	146.05	NA	710.2	NA	43.26233939	NA	60.01364431	M5	2.8	2.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.261	88	420	67	0.15952381	13qD2.3	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr12	118008803	118008803	A	G	ENSMUST00000084806.6	1	ENSMUSG00000018581	missense	F/S	2882	Dnah11	ENSMUST00000084806.6:c.8645T>C	ENSMUSP00000081867.6:p.Phe2882Ser	H-2-Kb	9	10	2	VSLLTDAHV	VFLLTDAHV	NetMHC	151.93	528.66	3.48	317	0.177	432.793	838.709	1.938	528.66	151.93	3378.6	1196.3	713.0336075	385.5760057	964.3840079	480.0096849	M5	0.885714286	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.175	317	0	0	NA	12qF2	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.742017741	sgMsh2	cell line
chr13	75878849	75878849	T	G	ENSMUST00000022078.11	1	ENSMUSG00000021589	missense	K/N	468	Rhobtb3	ENSMUST00000022078.11:c.1404A>C	ENSMUSP00000022078.5:p.Lys468Asn	H-2-Kb	9	10	2	SNETFLSFL	SKETFLSFL	NetMHC	152.36	2784.6	18.276	139	0.295	305.223	2383.314	7.808	2784.6	152.36	3434.7	227.4	1982.028979	421.8033261	1691.414308	383.0451784	M5	1.171428571	1.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.302	139	90	28	0.311111111	13qC1	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr13	119455737	119455737	CT	C	ENSMUST00000026520.13	1	ENSMUSG00000025451	FS	F/X	353	Paip1	ENSMUST00000026520.13:c.1062del	ENSMUSP00000026520.7:p.Pro355GlnfsTer88	H-2-Kb	9	69	0	FFFFFFFFL	NA	SMM	39.547	NA	NA	88	0.25	102.645	NA	NA	NA	154.21	NA	682.5	NA	39.54667729	NA	51.07989549	M5	2.942857143	2.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.261	88	420	67	0.15952381	13qD2.3	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr12	119208553	119208553	T	C	ENSMUST00000026360.8	1	ENSMUSG00000025321	missense	Q/R	60	Itgb8	ENSMUST00000026360.8:c.179A>G	ENSMUSP00000026360.8:p.Gln60Arg	H-2-Kb	9	4	8	VSCARCLRL	VSCARCLQL	SMMPMBEC	122.815	130.092	1.059	236	0.153	197.912	280.768	1.419	265.66	168.78	517	335	295.876178	227.0439846	130.0918231	122.8146005	M5	0.771428571	1.357142857	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.142	236	2	0	0	12qF2	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.602094395	sgMsh2	cell line
chr14	30565598	30565598	A	C	ENSMUST00000022529.7	1	ENSMUSG00000021957	missense	D/A	183	Tkt	ENSMUST00000022529.7:c.548A>C	ENSMUSP00000022529.6:p.Asp183Ala	H-2-Kb	9	7	5	VAIFAINRL	VAIFDINRL	NetMHCpan	105.3	537.5	5.104	70	0.343	203.936	485.56	2.381	877.91	173.39	537.5	105.3	433.6206938	234.4822647	361.6179668	276.8534884	M5	1.342857143	2.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.365	70	1429	311	0.21763471	14qB	chr14-7006943-52779282	4	2	2	0.99	4.197700362	NA	2	1	sgMsh2	cell line
chr14	8253530	8253530	C	A	ENSMUST00000164598.7	1	ENSMUSG00000021751	missense	A/S	206	Acox2	ENSMUST00000164598.7:c.616G>T	ENSMUSP00000126464.1:p.Ala206Ser	H-2-Kb	9	8	4	VVLSHLICL	VVLAHLICL	SMM	100.719	166.383	1.652	61	0.344	162.661	236.642	1.455	331.13	202.79	306.9	222.8	166.383402	100.7186741	156.4047722	122.5321348	M5	2.057142857	2.357142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.312	61	5	0	0	14qA1	chr14-7006943-52779282	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr13	119455737	119455737	CT	C	ENSMUST00000026520.13	1	ENSMUSG00000025451	FS	F/X	353	Paip1	ENSMUST00000026520.13:c.1062del	ENSMUSP00000026520.7:p.Pro355GlnfsTer88	H-2-Kb	9	26	0	VTHIWMISM	NA	NetMHCpan	210.8	NA	NA	88	0.25	240.649	NA	NA	NA	242.38	NA	210.8	NA	278.6826939	NA	238.9186213	M5	1.128571429	1.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.261	88	420	67	0.15952381	13qD2.3	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr13	119455737	119455737	CT	C	ENSMUST00000026520.13	1	ENSMUSG00000025451	FS	F/X	353	Paip1	ENSMUST00000026520.13:c.1062del	ENSMUSP00000026520.7:p.Pro355GlnfsTer88	H-2-Kb	9	71	0	FFFFFFLKF	NA	SMMPMBEC	70.024	NA	NA	88	0.25	168.803	NA	NA	NA	265.31	NA	1611.5	NA	72.29528931	NA	70.02449734	M5	1.985714286	2.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.261	88	420	67	0.15952381	13qD2.3	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr12	116318844	116318844	A	C	ENSMUST00000100986.3	1	ENSMUSG00000021171	missense	E/A	138	Esyt2	ENSMUST00000100986.3:c.413A>C	ENSMUSP00000098548.2:p.Glu138Ala	H-2-Kb	9	5	7	FICQFIAKL	FICQFIEKL	NetMHC	274.03	1858.1	6.781	202	0.178	434.65	1868.7	4.299	1858.1	274.03	1879.3	413	1888.469608	820.5593529	1023.882217	456.2995075	M5	1.142857143	2.2	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.186	202	242	36	0.148760331	12qF2	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.788658856	sgMsh2	cell line
chr12	111678648	111678648	A	G	ENSMUST00000084947.9	1	ENSMUSG00000060950	missense	Y/C	6	Trmt61a	ENSMUST00000084947.9:c.17A>G	ENSMUSP00000082011.3:p.Tyr6Cys	H-2-Kb	9	1	6	MSFVACEEL	MSFVAYEEL	NetMHCpan	242.1	23.8	0.098	117	0.205	359.464	57.617	0.16	18.72	290.27	23.8	242.1	91.43448014	428.6570788	121.6886295	527.5334467	M5	1.157142857	1.271428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.215	117	22	1	0.045454545	12qF1	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.911621796	sgMsh2	cell line
chr14	29170631	29170631	A	T	ENSMUST00000022567.8	1	ENSMUSG00000021991	missense	F/Y	418	Cacna2d3	ENSMUST00000022567.8:c.1253T>A	ENSMUSP00000022567.7:p.Phe418Tyr	H-2-Kb	9	6	6	ANKGFYTQI	ANKGFFTQI	NetMHCpan	153.5	133	0.866	135	0.23	222.545	313.745	1.41	417.88	298.99	133	153.5	384.6892055	273.5961615	242.8007366	171.4944225	M5	-0.357142857	-0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.221	135	0	0	NA	14qA3	chr14-7006943-52779282	4	2	2	0.99	4.197700362	NA	1	0.937062404	sgMsh2	cell line
chr13	119455737	119455737	CT	C	ENSMUST00000026520.13	1	ENSMUSG00000025451	FS	F/X	353	Paip1	ENSMUST00000026520.13:c.1062del	ENSMUSP00000026520.7:p.Pro355GlnfsTer88	H-2-Kb	9	67	0	FFFFFFFFF	NA	SMM	66.698	NA	NA	88	0.25	203.329	NA	NA	NA	318.3	NA	2645.3	NA	66.69756823	NA	88.35883884	M5	2.8	2.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.261	88	420	67	0.15952381	13qD2.3	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr13	119455737	119455737	CT	C	ENSMUST00000026520.13	1	ENSMUSG00000025451	FS	F/X	353	Paip1	ENSMUST00000026520.13:c.1062del	ENSMUSP00000026520.7:p.Pro355GlnfsTer88	H-2-Kb	9	68	0	FFFFFFFFF	NA	SMM	66.698	NA	NA	88	0.25	203.329	NA	NA	NA	318.3	NA	2645.3	NA	66.69756823	NA	88.35883884	M5	2.8	2.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.261	88	420	67	0.15952381	13qD2.3	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr13	75878849	75878849	T	G	ENSMUST00000022078.11	1	ENSMUSG00000021589	missense	K/N	468	Rhobtb3	ENSMUST00000022078.11:c.1404A>C	ENSMUSP00000022078.5:p.Lys468Asn	H-2-Kb	9	9	3	VSNETFLSF	VSKETFLSF	SMM	343.645	425.706	1.239	139	0.295	405.045	443.114	1.094	688.38	363.15	407.4	540.2	425.7062242	343.6449768	460.5215948	446.9407979	M5	0.128571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.302	139	90	28	0.311111111	13qC1	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr13	119455737	119455737	CT	C	ENSMUST00000026520.13	1	ENSMUSG00000025451	FS	F/X	353	Paip1	ENSMUST00000026520.13:c.1062del	ENSMUSP00000026520.7:p.Pro355GlnfsTer88	H-2-Kb	10	65	0	TSFFFFFFFF	NA	SMMPMBEC	302.594	NA	NA	88	0.25	465.228	NA	NA	NA	342.52	NA	804.4	NA	587.9359278	NA	302.5937824	M5	2.8	2.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.261	88	420	67	0.15952381	13qD2.3	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr13	119455737	119455737	CT	C	ENSMUST00000026520.13	1	ENSMUSG00000025451	FS	F/X	353	Paip1	ENSMUST00000026520.13:c.1062del	ENSMUSP00000026520.7:p.Pro355GlnfsTer88	H-2-Kb	10	66	0	SFFFFFFFFF	NA	SMMPMBEC	275.969	NA	NA	88	0.25	487.086	NA	NA	NA	606.61	NA	3527.5	NA	367.5614871	NA	275.9688094	M5	2.8	2.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.261	88	420	67	0.15952381	13qD2.3	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr14	45614188	45614188	T	C	ENSMUST00000087320.12	1	ENSMUSG00000037697	missense	Y/C	511	Ddhd1	ENSMUST00000087320.12:c.1532A>G	ENSMUSP00000084577.5:p.Tyr511Cys	H-2-Kb	8	8	4	IMYCTSPL	IMYYTSPL	NetMHC	11.28	6.72	0.596	132	0.159	26.327	19.907	0.756	6.72	11.28	8.5	16.2	35.54184757	37.30267702	31.31410475	36.45356443	M5	0.542857143	0.642857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.17	132	37	4	0.108108108	14qC1	chr14-7006943-52779282	4	2	2	0.99	4.197700362	NA	1	0.720817234	sgMsh2	cell line
chr14	52036009	52036009	A	G	ENSMUST00000214071.1	5	ENSMUSG00000044286	missense	M/T	34	Olfr221	ENSMUST00000214071.1:c.101T>C	ENSMUSP00000150675.1:p.Met34Thr	H-2-Kb	8	10	2	VTYAITVL	VMYAITVL	NetMHCpan	26.2	23.8	0.908	126	0.349	60.149	92.464	1.537	54.39	47.73	23.8	26.2	137.3219621	75.63799359	130.5389154	72.56713881	M5	1.657142857	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.36	126	0	0	NA	14qC2	chr14-7006943-52779282	4	2	2	0.99	4.197700362	NA	2	1	sgMsh2	cell line
chr14	65975611	65975611	T	G	ENSMUST00000022616.13	1	ENSMUSG00000022037	missense	F/V	149	Clu	ENSMUST00000022616.13:c.445T>G	ENSMUSP00000022616.6:p.Phe149Val	H-2-Kb	8	8	4	SSPVYFWM	SSPFYFWM	NetMHCpan	60.6	40.4	0.667	119	0.244	147.752	201.93	1.367	223.25	116.55	40.4	60.6	180.6092545	178.9534189	234.2825811	206.8902384	M5	0.614285714	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.232	119	17302	4403	0.254479251	14qD1	chr14-53336808-123291781	4	2	2	0.99	4.197700362	NA	1	0.983703519	sgMsh2	cell line
chr14	123515710	123515710	C	A	ENSMUST00000000201.6	5	ENSMUSG00000000197	missense	R/I	288	Nalcn	ENSMUST00000000201.6:c.863G>T	ENSMUSP00000000201.5:p.Arg288Ile	H-2-Kb	8	6	6	VFLMYIAI	VFLMYRAI	SMM	80.675	70.265	0.871	112	0.241	117.27	70.672	0.603	62.95	152.93	94.9	239.3	70.26515361	80.67519058	71.07878574	81.60936526	M5	2.571428571	2.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.245	112	0	0	NA	14qE5	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	sgMsh2	cell line
chr14	66004100	66004100	T	A	ENSMUST00000059970.8	1	ENSMUSG00000034450	missense	H/L	103	Gulo	ENSMUST00000059970.8:c.308A>T	ENSMUSP00000060912.7:p.His103Leu	H-2-Kb	8	11	1	LGLALSNL	HGLALSNL	NetMHC	204.75	1235.08	6.032	65	0.262	230.187	887.134	3.854	1235.08	204.75	1375.1	217.3	539.1877292	243.0748352	512.5544401	245.8895091	M5	1.214285714	1.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.288	65	0	0	NA	14qD1	chr14-53336808-123291781	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr15	3325898	3325898	C	A	ENSMUST00000069451.10	1	ENSMUSG00000055737	missense	R/M	301	Ghr	ENSMUST00000069451.10:c.902G>T	ENSMUSP00000069457.4:p.Arg301Met	H-2-Kb	8	4	8	VIFSKQQM	VIFSKQQR	NetMHCpan	188.2	12750.8	67.751	126	0.31	363.498	6741.575	18.546	9458.39	228.41	12750.8	188.2	2790.872523	500.8872766	4024.76011	498.5859086	M5	-0.357142857	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.333	126	11	0	0	15qA1	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	2	1	sgMsh2	cell line
chr14	108912776	108912776	T	C	ENSMUST00000100322.3	NA	ENSMUSG00000075478	missense	T/A	168	Slitrk1	ENSMUST00000100322.3:c.502A>G	ENSMUSP00000097897.2:p.Thr168Ala	H-2-Kb	8	9	3	ISALPANV	ISTLPANV	SMM	194.868	217.641	1.117	62	0.177	278.341	278.464	1	284.82	287.07	1132.8	711.5	217.6406428	194.8677632	272.1071791	269.6124854	M5	0.814285714	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.207	62	0	0	NA	14qE3	chr14-53336808-123291781	4	2	2	0.99	4.197700362	NA	1	0.877700985	sgMsh2	cell line
chr15	55084094	55084094	A	G	ENSMUST00000023059.12	1	ENSMUSG00000022422	missense	V/A	230	Dscc1	ENSMUST00000023059.12:c.689T>C	ENSMUSP00000023059.6:p.Val230Ala	H-2-Kb	8	6	6	WSLDRAPL	WSLDRVPL	SMMPMBEC	220.668	636.414	2.884	82	0.22	309.984	790.887	2.551	1192.99	347.86	795.2	403.9	786.5747483	272.1071791	636.4144033	220.6683258	M5	-0.142857143	-0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.221	82	10	2	0.2	15qD1	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	0.937062404	sgMsh2	cell line
chr14	110750419	110750419	GT	G	ENSMUST00000078386.3	1	ENSMUSG00000045871	FS	T/X	619	Slitrk6	ENSMUST00000078386.3:c.1855del	ENSMUSP00000077492.2:p.Thr619LeufsTer25	H-2-Kb	8	8	4	VFILLYSV	NA	SMM	324.146	NA	NA	145	0.241	444.036	NA	NA	NA	474.32	NA	1041.2	NA	324.1455024	NA	413.7518989	M5	2.428571429	2.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.246	145	0	0	NA	14qE3	chr14-53336808-123291781	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr14	110750419	110750419	GT	G	ENSMUST00000078386.3	1	ENSMUSG00000045871	FS	T/X	619	Slitrk6	ENSMUST00000078386.3:c.1855del	ENSMUSP00000077492.2:p.Thr619LeufsTer25	H-2-Kb	8	5	7	LLIVFILL	LLIVFITI	SMMPMBEC	186.526	1017.982	5.458	145	0.241	388.485	1820.828	4.687	3883.8	517.11	2050.4	1179.4	1591.255801	259.8603386	1017.981768	186.5262676	M5	3.914285714	3.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.246	145	0	0	NA	14qE3	chr14-53336808-123291781	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr15	16823315	16823315	CA	C	ENSMUST00000228307.1	NA	ENSMUSG00000025370	FS	K/X	128	Cdh9	ENSMUST00000228307.1:c.383del	ENSMUSP00000154022.1:p.Lys128ArgfsTer3	H-2-Kb	9	4	8	SLYILRARL	SLYILRAKA	NetMHC	34.72	2987.65	86.05	114	0.149	138.433	2844.375	20.547	2987.65	34.72	2701.1	48.7	4386.417848	267.9847002	2662.257137	228.165512	M5	0.514285714	1.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.166	114	0	0	NA	15qA2	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	0.703856828	sgMsh2	cell line
chr14	121238629	121238629	G	T	ENSMUST00000026635.7	5	ENSMUSG00000025555	missense	S/I	286	Farp1	ENSMUST00000026635.7:c.857G>T	ENSMUSP00000026635.6:p.Ser286Ile	H-2-Kb	9	9	3	VNISYQDTL	VNSSYQDTL	NetMHC	52.53	521.07	9.919	121	0.198	110.471	549.749	4.976	521.07	52.53	795.6	79	475.4556362	141.9416992	578.428922	179.1636906	M5	-0.214285714	-0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.202	121	107	18	0.168224299	14qE5	chr14-53336808-123291781	4	2	2	0.99	4.197700362	NA	1	0.856500478	sgMsh2	cell line
chr14	56043442	56043442	T	C	ENSMUST00000015576.5	1	ENSMUSG00000022226	missense	F/L	96	Mcpt2	ENSMUST00000015576.5:c.286T>C	ENSMUSP00000015576.4:p.Phe96Leu	H-2-Kb	9	11	1	LVHPKFQYL	FVHPKFQYL	NetMHC	82.4	100.78	1.223	156	0.212	171.976	196.191	1.141	100.78	82.4	149.1	107.3	243.2820126	236.6519024	295.2908568	257.1875847	M5	-0.985714286	-0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.206	156	10	0	0	14qC3	chr14-53336808-123291781	4	2	2	0.99	4.197700362	NA	1	0.873460883	sgMsh2	cell line
chr15	3325898	3325898	C	A	ENSMUST00000069451.10	1	ENSMUSG00000055737	missense	R/M	301	Ghr	ENSMUST00000069451.10:c.902G>T	ENSMUSP00000069457.4:p.Arg301Met	H-2-Kb	9	4	8	VIFSKQQMI	VIFSKQQRI	NetMHC	128.02	112.77	0.881	126	0.31	167.824	129.667	0.773	112.77	128.02	141	229.5	118.334124	147.6080354	149.021867	188.039895	M5	-0.357142857	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.333	126	11	0	0	15qA1	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	2	1	sgMsh2	cell line
chr14	57480701	57480701	T	C	ENSMUST00000122063.7	1	ENSMUSG00000040040	missense	M/T	577	Ift88	ENSMUST00000122063.7:c.1730T>C	ENSMUSP00000113768.1:p.Met577Thr	H-2-Kb	9	5	7	QAIEWLTQL	QAIEWLMQL	NetMHC	144.21	130.29	0.903	182	0.247	232.952	219.487	0.942	130.29	144.21	188.3	221.5	250.6744092	244.4049514	289.2344371	260.7654204	M5	0.5	0.5	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.237	182	17	4	0.235294118	14qC3	chr14-53336808-123291781	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr14	110750419	110750419	GT	G	ENSMUST00000078386.3	1	ENSMUSG00000045871	FS	T/X	619	Slitrk6	ENSMUST00000078386.3:c.1855del	ENSMUSP00000077492.2:p.Thr619LeufsTer25	H-2-Kb	9	7	5	IVFILLYSV	NA	NetMHC	166.93	NA	NA	145	0.241	256.064	NA	NA	NA	166.93	NA	455.7	NA	248.9487787	NA	263.1782532	M5	2.428571429	3.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.246	145	0	0	NA	14qE3	chr14-53336808-123291781	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr14	56761852	56761852	A	C	ENSMUST00000022507.12	1	ENSMUSG00000021938	missense	L/V	316	Pspc1	ENSMUST00000022507.12:c.946T>G	ENSMUSP00000022507.5:p.Leu316Val	H-2-Kb	9	11	1	VMLMRQDLM	LMLMRQDLM	SMM	117.249	337.373	2.877	105	0.286	170.678	505.031	2.959	672.69	215.68	1505.6	463.1	337.3727491	117.2492302	325.2744865	125.6753201	M5	-0.014285714	0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.267	105	78	0	0	14qC3	chr14-53336808-123291781	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr14	123515710	123515710	C	A	ENSMUST00000000201.6	5	ENSMUSG00000000197	missense	R/I	288	Nalcn	ENSMUST00000000201.6:c.863G>T	ENSMUSP00000000201.5:p.Arg288Ile	H-2-Kb	9	5	7	WVFLMYIAI	WVFLMYRAI	SMM	126.506	178.694	1.413	112	0.241	190.437	187.572	0.985	117.77	251.38	308	1796.8	178.6940122	126.5056726	196.4490803	129.4941055	M5	2.571428571	2.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.245	112	0	0	NA	14qE5	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	sgMsh2	cell line
chr15	63824978	63824978	T	C	ENSMUST00000188691.1	1	ENSMUSG00000056293	missense	K/R	448	Gsdmc2	ENSMUST00000188691.1:c.1343A>G	ENSMUSP00000140487.1:p.Lys448Arg	H-2-Kb	9	4	8	STWDLEARM	STWDLEAKM	NetMHC	270.97	630.27	2.326	350	0.28	393.946	686.739	1.743	630.27	270.97	949.5	462.3	743.2073569	407.4834739	574.4470454	380.4083139	M5	-0.7	-0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.275	350	0	0	NA	15qD1	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr14	34594872	34594872	T	C	ENSMUST00000022331.2	1	ENSMUSG00000021799	missense	Y/C	320	Opn4	ENSMUST00000022331.2:c.959A>G	ENSMUSP00000022331.2:p.Tyr320Cys	H-2-Kb	9	6	6	VAFAGCSHI	VAFAGYSHI	NetMHCpan	125.5	15.8	0.126	73	0.233	316.575	52.299	0.165	26.39	294.11	15.8	125.5	87.5205423	410.3080144	78.20778752	339.0392667	M5	1.028571429	1.7	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	73	0	0	NA	14qB	chr14-7006943-52779282	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr14	50453867	50453867	G	T	ENSMUST00000214792.1	5	ENSMUSG00000095917	missense	A/S	272	Olfr740	ENSMUST00000214792.1:c.814G>T	ENSMUSP00000148916.1:p.Ala272Ser	H-2-Kb	9	11	1	SGMQKLVTL	AGMQKLVTL	NetMHCpan	247.6	429.1	1.733	192	0.24	423.556	718.749	1.697	707.62	313.47	429.1	247.6	968.523137	625.3310593	729.8775406	533.6419961	M5	0.8	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.232	192	0	0	NA	14qC1	chr14-7006943-52779282	4	2	2	0.99	4.197700362	NA	1	0.983703519	sgMsh2	cell line
chr14	52036009	52036009	A	G	ENSMUST00000214071.1	5	ENSMUSG00000044286	missense	M/T	34	Olfr221	ENSMUST00000214071.1:c.101T>C	ENSMUSP00000150675.1:p.Met34Thr	H-2-Kb	9	6	6	VVFLVTYAI	VVFLVMYAI	NetMHC	404.46	257.9	0.638	126	0.349	474.826	410.59	0.865	257.9	404.46	656.7	462	397.2921646	487.6519891	423.8869047	600.1364431	M5	2.157142857	2.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.36	126	0	0	NA	14qC2	chr14-7006943-52779282	4	2	2	0.99	4.197700362	NA	2	1	sgMsh2	cell line
chr14	47529305	47529305	A	G	ENSMUST00000043112.8	1	ENSMUSG00000037536	missense	S/G	92	Fbxo34	ENSMUST00000043112.8:c.274A>G	ENSMUSP00000044675.7:p.Ser92Gly	H-2-Kb	9	10	2	AGYMKPTVL	ASYMKPTVL	NetMHCpan	263.9	100	0.379	169	0.213	439.278	144.033	0.328	140.75	488.39	100	263.9	180.7631913	518.9314595	147.3160278	390.1665199	M5	0.342857143	0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.212	169	68	23	0.338235294	14qC1	chr14-7006943-52779282	4	2	2	0.99	4.197700362	NA	1	0.898901492	sgMsh2	cell line
chr14	45614188	45614188	T	C	ENSMUST00000087320.12	1	ENSMUSG00000037697	missense	Y/C	511	Ddhd1	ENSMUST00000087320.12:c.1532A>G	ENSMUSP00000084577.5:p.Tyr511Cys	H-2-Kb	9	8	4	IMYCTSPLY	IMYYTSPLY	SMM	100.487	72.629	0.723	132	0.159	436.085	328.486	0.753	479.86	649.71	1452	1280.4	72.6289892	100.4870276	177.1128208	222.4590099	M5	0.085714286	0.642857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.17	132	37	4	0.108108108	14qC1	chr14-7006943-52779282	4	2	2	0.99	4.197700362	NA	1	0.720817234	sgMsh2	cell line
chr14	50299113	50299113	A	C	ENSMUST00000216195.1	5	ENSMUSG00000090874	missense	N/K	65	Olfr733	ENSMUST00000216195.1:c.195T>G	ENSMUSP00000149807.1:p.Asn65Lys	H-2-Kb	9	4	8	PLYLFLGKL	PLYLFLGNL	SMMPMBEC	240.021	202.418	0.843	181	0.232	452.95	205.059	0.453	207.7	659.8	370.2	842.8	162.5960534	246.0990856	202.4184057	240.0214196	M5	1.228571429	1.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.251	181	0	0	NA	14qC1	chr14-7006943-52779282	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr16	16673096	16673096	T	C	ENSMUST00000206365.2	3	ENSMUSG00000048101	missense	K/R	295	Olfr19	ENSMUST00000206365.2:c.884A>G	ENSMUSP00000145655.2:p.Lys295Arg	H-2-Db	9	6	6	YSLRNRDLM	YSLRNKDLM	NetMHC	3.3	4.46	1.352	94	0.181	5.853	8.806	1.505	4.46	3.3	5.9	4.6	11.71170164	7.105914866	14.27479894	9.496640546	M5	-0.928571429	-0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.178	94	0	0	NA	16qA3	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	0.754738045	sgMsh2	cell line
chr15	75597834	75597834	A	G	ENSMUST00000023243.10	1	ENSMUSG00000022579	missense	T/A	133	Gpihbp1	ENSMUST00000023243.10:c.397A>G	ENSMUSP00000023243.4:p.Thr133Ala	H-2-Db	9	10	2	SALCNIPPW	STLCNIPPW	SMMPMBEC	43.709	249.787	5.715	78	0.231	85.973	425.163	4.945	1274.99	88.65	308.8	114.3	541.5268566	83.29520473	249.7870966	43.70891238	M5	0.457142857	0.957142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.24	78	0	0	NA	15qD3	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr16	59543197	59543197	AT	A	ENSMUST00000172910.2	5	ENSMUSG00000022723	FS	K/X	2441	Crybg3	ENSMUST00000172910.2:c.7323del	ENSMUSP00000156047.1:p.Lys2441AsnfsTer11	H-2-Db	9	7	5	AAEMNHCIL	NA	NetMHCpan	226	NA	NA	53	0.189	388.867	NA	NA	NA	644.6	NA	226	NA	423.2724481	NA	354.4622582	M5	0.357142857	0.357142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.224	53	7	0	0	16qC1.3	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	0.949782708	sgMsh2	cell line
chr16	3592590	3592590	A	G	ENSMUST00000216259.1	5	ENSMUSG00000051003	missense	S/G	65	Olfr161	ENSMUST00000216259.1:c.193A>G	ENSMUSP00000150825.1:p.Ser65Gly	H-2-Db	9	8	4	FFLGNLSFV	FFLSNLSFV	SMM	191.699	80.282	0.419	146	0.212	456.264	114.023	0.25	99.94	647.94	502	1445.2	80.28233585	191.6990674	128.1061561	264.5879126	M5	1.414285714	1.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.21	146	0	0	NA	16qA1	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	sgMsh2	cell line
chr16	31944927	31944927	T	G	ENSMUST00000052174.2	1	ENSMUSG00000045625	missense	F/V	268	Pigz	ENSMUST00000052174.2:c.802T>G	ENSMUSP00000057509.2:p.Phe268Val	H-2-Kb	8	9	3	ANVLYYNL	ANFLYYNL	NetMHC	7.37	2.69	0.365	147	0.238	17.766	2.966	0.167	2.69	7.37	3.4	11	2.64691503	24.5323979	3.241455024	28.29697428	M5	0.314285714	0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.237	147	0	0	NA	16qB2	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr16	3592590	3592590	A	G	ENSMUST00000216259.1	5	ENSMUSG00000051003	missense	S/G	65	Olfr161	ENSMUST00000216259.1:c.193A>G	ENSMUSP00000150825.1:p.Ser65Gly	H-2-Kb	8	6	6	MYFFLGNL	MYFFLSNL	NetMHCpan	34	14.7	0.432	146	0.212	89.071	59.088	0.663	49.51	88.66	14.7	34	68.66572344	89.4828896	80.11982647	98.3422182	M5	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.21	146	0	0	NA	16qA1	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	sgMsh2	cell line
chr16	59303332	59303332	CT	C	ENSMUST00000215893.1	5	ENSMUSG00000068182	FS	F/X	60	Olfr203	ENSMUST00000215893.1:c.182del	ENSMUSP00000149906.1:p.Phe61SerfsTer5	H-2-Kb	8	6	7	HTPMYFSL	HTPMYFFL	NetMHCpan	81	117.9	1.456	363	0.264	132.528	176.956	1.335	197.23	91.38	117.9	81	194.4195797	228.4230889	159.4924025	173.6760767	M5	0.585714286	0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.264	363	0	0	NA	16qC1.3	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr16	90767027	90767027	CA	C	ENSMUST00000140920.1	5	ENSMUSG00000039929	FS	L/X	1616	Urb1	ENSMUST00000140920.1:c.4847del	ENSMUSP00000114717.1:p.Leu1616ArgfsTer37	H-2-Kb	8	35	0	MTPAFFSI	NA	NetMHCpan	58.1	NA	NA	77	0.156	155.093	NA	NA	NA	108.47	NA	58.1	NA	201.7158386	NA	223.738128	M5	1.257142857	1.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.171	77	8	0	0	16qC3.3	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	0.725057335	sgMsh2	cell line
chr16	88729227	88729227	G	T	ENSMUST00000060494.7	NA	ENSMUSG00000056350	missense	G/V	113	Krtap13-1	ENSMUST00000060494.7:c.338G>T	ENSMUSP00000055537.6:p.Gly113Val	H-2-Kb	8	11	1	VSRSSYSL	GSRSSYSL	SMM	130.84	2092.859	15.996	74	0.338	160.626	3922.63	24.421	7459.39	133	5752.4	266.8	2092.859144	130.8398387	1966.708524	188.2521739	M5	-0.742857143	-0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.353	74	0	0	NA	16qC3.3	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	2	1	sgMsh2	cell line
chr16	58926453	58926453	T	C	ENSMUST00000205986.3	2	ENSMUSG00000090951	missense	I/M	39	Olfr181	ENSMUST00000205986.3:c.117A>G	ENSMUSP00000145877.2:p.Ile39Met	H-2-Kb	8	5	7	AIYLVTMV	AIYLVTIV	NetMHC	143.87	786.44	5.466	294	0.228	259.507	804.095	3.099	786.44	143.87	1131.3	680.2	620.4974485	238.6382195	821.7505435	280.3754606	M5	2.371428571	2.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	294	0	0	NA	16qC1.3	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	0.958262911	sgMsh2	cell line
chr15	98543729	98543729	A	C	ENSMUST00000169707.7	1	ENSMUSG00000011960	missense	L/V	553	Ccnt1	ENSMUST00000169707.7:c.1657T>G	ENSMUSP00000126874.1:p.Leu553Val	H-2-Kb	8	11	1	VAHKTYSL	LAHKTYSL	NetMHC	166.83	1240.91	7.438	103	0.194	441.392	1893.108	4.289	1240.91	166.83	1063.5	270.8	3294.124431	651.2383991	2545.305993	611.9839043	M5	-0.614285714	-0.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.204	103	81	18	0.222222222	15qF1	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	0.864980681	sgMsh2	cell line
chr16	44216308	44216308	C	A	ENSMUST00000119746.7	5	ENSMUSG00000068284	missense	P/T	384	Usf3	ENSMUST00000119746.7:c.1150C>A	ENSMUSP00000112620.1:p.Pro384Thr	H-2-Kb	8	8	4	STLTVSSL	STLPVSSL	SMM	168.943	283.622	1.679	131	0.267	203.876	394.379	1.934	526.3	204.17	378.8	262.7	283.6220554	168.9429215	409.9585987	203.5822922	M5	1.257142857	1.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.274	131	15	4	0.266666667	16qB4	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr15	100190056	100190056	T	C	ENSMUST00000100203.9	1	ENSMUSG00000023026	missense	V/A	957	Dip2b	ENSMUST00000100203.9:c.2870T>C	ENSMUSP00000097777.3:p.Val957Ala	H-2-Kb	8	7	5	ASVMAGNL	ASVMVGNL	NetMHC	249.4	155.85	0.625	156	0.276	304.177	234.725	0.772	155.85	249.4	254.3	361	261.0597994	332.4604589	215.149331	275.892567	M5	1	1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.259	156	34	9	0.264705882	15qF1	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr16	31944927	31944927	T	G	ENSMUST00000052174.2	1	ENSMUSG00000045625	missense	F/V	268	Pigz	ENSMUST00000052174.2:c.802T>G	ENSMUSP00000057509.2:p.Phe268Val	H-2-Kb	8	4	8	VFLTPANV	VFLTPANF	SMM	146.805	667.944	4.55	147	0.238	241.255	718.651	2.979	691.3	267.36	1047.3	902.1	667.9439184	146.8047136	746.0020141	215.149331	M5	0.971428571	0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.237	147	0	0	NA	16qB2	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr15	76185668	76185668	G	A	ENSMUST00000073418.12	5	ENSMUSG00000022565	missense	R/W	1153	Plec	ENSMUST00000073418.12:c.3457C>T	ENSMUSP00000073124.6:p.Arg1153Trp	H-2-Kb	8	7	5	VHRLWLPL	VHRLRLPL	SMM	145.794	747.722	5.129	42	0.167	184.366	805.542	4.369	756.53	292.75	951.2	214.3	747.7217263	145.794117	854.5549615	154.4329616	M5	0.171428571	0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe	3	0.19	42	92	26	0.282608696	15qD3	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	0.805619261	sgMsh2	cell line
chr16	3592523	3592523	GA	G	ENSMUST00000216259.1	5	ENSMUSG00000051003	FS	G/X	42	Olfr161	ENSMUST00000216259.1:c.128del	ENSMUSP00000150825.1:p.Asn43ThrfsTer46	H-2-Kb	8	47	0	LSLRYWPF	NA	NetMHCpan	130.4	NA	NA	114	0.246	210.41	NA	NA	NA	465.62	NA	130.4	NA	248.7367755	NA	172.0838049	M5	-0.357142857	-0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.245	114	0	0	NA	16qA1	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	sgMsh2	cell line
chr16	58915901	58915901	GA	G	ENSMUST00000171656.2	2	ENSMUSG00000090629	FS	S/X	247	Olfr180	ENSMUST00000171656.2:c.739del	ENSMUSP00000128358.1:p.Ser247LeufsTer31	H-2-Kb	8	31	0	KTYQWLYF	NA	NetMHCpan	200.7	NA	NA	192	0.25	382.912	NA	NA	NA	489.31	NA	200.7	NA	445.3895263	NA	320.4350395	M5	-0.157142857	-0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.247	192	0	0	NA	16qC1.2	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr16	58915901	58915901	GA	G	ENSMUST00000171656.2	2	ENSMUSG00000090629	FS	S/X	247	Olfr180	ENSMUST00000171656.2:c.739del	ENSMUSP00000128358.1:p.Ser247LeufsTer31	H-2-Kb	8	29	0	VIKTYQWL	NA	SMM	154.433	NA	NA	192	0.25	282.366	NA	NA	NA	556.53	NA	386.6	NA	154.4329616	NA	178.1312026	M5	-0.285714286	-0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.247	192	0	0	NA	16qC1.2	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr16	32961669	32961669	A	G	ENSMUST00000135193.8	5	ENSMUSG00000022801	missense	Y/C	271	Lrch3	ENSMUST00000135193.8:c.812A>G	ENSMUSP00000130708.1:p.Tyr271Cys	H-2-Kb	8	5	7	KIHIFKCL	KIHIFKYL	SMMPMBEC	256.886	92.628	0.361	207	0.237	319.381	76.184	0.239	59.74	598.73	59.4	324.9	102.9769442	313.8629122	92.62751223	256.8857419	M5	1.571428571	1.571428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.251	207	50	9	0.18	16qB3	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr16	3592590	3592590	A	G	ENSMUST00000216259.1	5	ENSMUSG00000051003	missense	S/G	65	Olfr161	ENSMUST00000216259.1:c.193A>G	ENSMUSP00000150825.1:p.Ser65Gly	H-2-Kb	9	5	7	PMYFFLGNL	PMYFFLSNL	SMM	22.862	15.35	0.671	146	0.212	43.133	26.875	0.623	34.5	54.11	28.5	71.6	15.35005727	22.86177783	25.24933823	32.15511003	M5	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.21	146	0	0	NA	16qA1	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	sgMsh2	cell line
chr15	98126427	98126427	G	T	ENSMUST00000051226.7	1	ENSMUSG00000033065	missense	G/C	439	Pfkm	ENSMUST00000051226.7:c.1315G>T	ENSMUSP00000059801.6:p.Gly439Cys	H-2-Kb	9	7	5	VVHDCFEGL	VVHDGFEGL	NetMHC	110.43	431.59	3.908	112	0.205	228.926	428.227	1.871	431.59	110.43	423.6	235.2	439.6529586	227.0439846	424.864065	230.8075441	M5	-0.214285714	0.5	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.214	112	137	28	0.204379562	15qF1	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	0.907381694	sgMsh2	cell line
chr16	20686853	20686853	A	G	ENSMUST00000115460.7	5	ENSMUSG00000045983	missense	I/V	1292	Eif4g1	ENSMUST00000115460.7:c.3874A>G	ENSMUSP00000111120.1:p.Ile1292Val	H-2-Kb	9	11	1	VAREHMGRL	IAREHMGRL	SMMPMBEC	106.967	141.661	1.324	60	0.25	116.472	149.63	1.285	127.43	113.79	157.6	170.6	175.4324789	119.1543769	141.6609011	106.9670454	M5	-1.485714286	-0.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.267	60	515	123	0.238834951	16qB1	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr15	76622252	76622252	GT	G	ENSMUST00000078803.4	1	ENSMUSG00000115987	FS	N/X	216	Vps28	ENSMUST00000078803.4:c.647del	ENSMUSP00000077856.3:p.Asn216ThrfsTer?	H-2-Kb	9	5	7	SAYNAFTAS	SAYNAFNRF	SMM	204.226	61.96	0.303	129	0.225	329.815	52.55	0.159	43.14	281.84	34.5	452.4	61.95979897	204.225515	87.54876014	377.7896015	M5	0.014285714	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.235	129	143	8	0.055944056	15qD3	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	0.996423823	sgMsh2	cell line
chr16	58915901	58915901	GA	G	ENSMUST00000171656.2	2	ENSMUSG00000090629	FS	S/X	247	Olfr180	ENSMUST00000171656.2:c.739del	ENSMUSP00000128358.1:p.Ser247LeufsTer31	H-2-Kb	9	31	0	KTYQWLYFI	NA	NetMHCpan	171.2	NA	NA	192	0.25	384.332	NA	NA	NA	307.23	NA	171.2	NA	461.4344339	NA	521.4948213	M5	0.585714286	0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.247	192	0	0	NA	16qC1.2	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr15	76185668	76185668	G	A	ENSMUST00000073418.12	5	ENSMUSG00000022565	missense	R/W	1153	Plec	ENSMUST00000073418.12:c.3457C>T	ENSMUSP00000073124.6:p.Arg1153Trp	H-2-Kb	9	6	6	TVHRLWLPL	TVHRLRLPL	NetMHCpan	140.4	473.4	3.372	42	0.167	302.662	666.334	2.202	585.79	318.08	473.4	140.4	790.8789199	332.7438214	746.8785726	287.2433612	M5	0.171428571	0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe	3	0.19	42	92	26	0.282608696	15qD3	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	0.805619261	sgMsh2	cell line
chr16	3592523	3592523	GA	G	ENSMUST00000216259.1	5	ENSMUSG00000051003	FS	G/X	42	Olfr161	ENSMUST00000216259.1:c.128del	ENSMUSP00000150825.1:p.Asn43ThrfsTer46	H-2-Kb	9	39	0	WMYASPPPL	NA	NetMHCpan	187.9	NA	NA	114	0.246	209.738	NA	NA	NA	330.1	NA	187.9	NA	192.357888	NA	227.1171867	M5	-0.185714286	-0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.245	114	0	0	NA	16qA1	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	sgMsh2	cell line
chr16	43898221	43898221	C	A	ENSMUST00000132859.7	5	ENSMUSG00000022701	missense	S/Y	4	Ccdc191	ENSMUST00000132859.7:c.11C>A	ENSMUSP00000116078.1:p.Ser4Tyr	H-2-Kb	9	2	3	MTYMKKELV	MTSMKKELV	NetMHC	416.43	10480.62	25.168	240	0.271	433.746	8552.231	19.717	10480.62	416.43	14641.3	616.9	6623.84254	440.6664633	5600.799166	426.8251484	M5	-0.385714286	-0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.251	240	22	0	0	16qB4	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr16	58926453	58926453	T	C	ENSMUST00000205986.3	2	ENSMUSG00000090951	missense	I/M	39	Olfr181	ENSMUST00000205986.3:c.117A>G	ENSMUSP00000145877.2:p.Ile39Met	H-2-Kb	9	3	9	FSAIYLVTM	FSAIYLVTI	SMM	339.711	641.372	1.888	294	0.228	388.31	695.236	1.79	910.5	521.58	749.1	436.8	641.3720055	339.7113053	579.7623384	339.8208329	M5	2.028571429	2.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	294	0	0	NA	16qC1.3	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	0.958262911	sgMsh2	cell line
chr16	32756512	32756512	A	G	ENSMUST00000096106.9	5	ENSMUSG00000079620	missense	T/A	2129	Muc4	ENSMUST00000096106.9:c.6385A>G	ENSMUSP00000093813.3:p.Thr2129Ala	H-2-Kb	9	9	3	VIATHGSTL	VITTHGSTL	SMM	403.748	587.638	1.455	237	0.19	431.743	696.919	1.614	857.84	657.9	806.2	439.6	587.6381732	403.747643	562.6651281	423.8869047	M5	-0.028571429	0.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.198	237	21	1	0.047619048	16qB3	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	0.839540072	sgMsh2	cell line
chr17	56632320	56632320	T	G	ENSMUST00000112979.3	1	ENSMUSG00000040828	missense	F/V	50	Catsperd	ENSMUST00000112979.3:c.148T>G	ENSMUSP00000108603.2:p.Phe50Val	H-2-Db	9	5	7	YAFPNTVVL	YAFPNTFVL	NetMHCpan	9.1	7.6	0.835	140	0.179	33.615	30.922	0.92	12.57	10.27	7.6	9.1	49.27424743	62.03260224	49.83907806	56.96000254	M5	1.314285714	1.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.195	140	0	0	NA	17qD	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.826819768	sgMsh2	cell line
chr17	45695545	45695545	G	A	ENSMUST00000024734.7	1	ENSMUSG00000023939	missense	S/N	15	Mrpl14	ENSMUST00000024734.7:c.44G>A	ENSMUSP00000024734.7:p.Ser15Asn	H-2-Db	9	7	5	FAHVNRAFS	FAHVSRAFS	SMM	38.514	780.944	20.277	71	0.296	60.359	3217.874	53.312	4988.41	45.63	5755.7	298.1	780.9441932	38.51412184	1447.338118	75.08790718	M5	-0.457142857	-0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.32	71	107	31	0.289719626	17qB3	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr17	37701005	37701005	AT	A	ENSMUST00000213732.1	5	ENSMUSG00000059964	FS	F/X	112	Olfr119	ENSMUST00000213732.1:c.339del	ENSMUSP00000150099.1:p.Phe113LeufsTer3	H-2-Kb	8	5	8	QMFFFTFL	QMFFFTFF	NetMHCpan	9.9	98.7	9.97	378	0.296	18.421	250.269	13.586	184.5	17.4	98.7	9.9	316.0385059	19.44195797	349.7357273	27.84453695	M5	2.314285714	2.314285714	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.283	378	0	0	NA	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr17	38082114	38082114	A	G	ENSMUST00000216523.1	5	ENSMUSG00000043312	missense	M/T	288	Olfr131	ENSMUST00000216523.1:c.863T>C	ENSMUSP00000150562.1:p.Met288Thr	H-2-Kb	8	8	4	ITPTLNPL	ITPMLNPL	NetMHC	80.3	53.48	0.666	173	0.243	136.287	121.388	0.891	53.48	80.3	100.3	182.4	146.4670721	126.107234	142.4754378	146.4670721	M5	-0.071428571	0.028571429	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.236	173	0	0	NA	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr17	56777470	56777470	T	C	ENSMUST00000002444.14	1	ENSMUSG00000024206	missense	N/S	668	Rfx2	ENSMUST00000002444.14:c.2003A>G	ENSMUSP00000002444.7:p.Asn668Ser	H-2-Kb	8	6	6	VMGEFSDL	VMGEFNDL	NetMHC	113.49	324.64	2.861	63	0.175	192.202	326.647	1.699	324.64	113.49	576.2	261.7	313.8629122	193.9724271	328.6548155	190.4320313	M5	0.042857143	0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.19	63	0	0	NA	17qD	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.805619261	sgMsh2	cell line
chr17	42592968	42592968	TA	T	ENSMUST00000068355.7	1	ENSMUSG00000043972	FS	Y/X	159	Opn5	ENSMUST00000068355.7:c.475del	ENSMUSP00000063542.6:p.Tyr159MetfsTer43	H-2-Kb	8	5	7	LAVIWAML	LAVIWAYA	NetMHCpan	147.2	3567.3	24.234	44	0.295	206.513	4062.47	19.672	6717.72	182.49	3567.3	147.2	4557.639811	321.1737185	2604.593785	230.5366617	M5	2.442857143	2.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.309	44	0	0	NA	17qB3	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr17	5712447	5712447	AT	A	ENSMUST00000089185.5	1	ENSMUSG00000034265	FS	F/X	209	Zdhhc14	ENSMUST00000089185.5:c.631del	ENSMUSP00000086589.4:p.Tyr211IlefsTer10	H-2-Kb	8	7	7	RNYRFFIC	RNYRFFYM	NetMHCpan	144.1	5.4	0.037	87	0.23	206.387	7.945	0.038	4.87	246.15	5.4	144.1	10.48914285	166.6249377	12.09873599	255.1173529	M5	0.471428571	0.471428571	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.215	87	0	0	NA	17qA1	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.911621796	sgMsh2	cell line
chr17	40228805	40228805	A	G	ENSMUST00000026499.5	1	ENSMUSG00000025433	missense	V/A	167	Crisp3	ENSMUST00000026499.5:c.500T>C	ENSMUSP00000026499.5:p.Val167Ala	H-2-Kb	8	10	2	YACRYCPV	YVCRYCPV	SMMPMBEC	174.478	161.339	0.925	410	0.232	239.579	312.449	1.304	429.13	286.52	494.4	303	195.7672319	192.6371303	161.3392375	174.4777291	M5	0.514285714	0.514285714	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.236	410	4	1	0.25	17qB2	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr17	44991768	44991768	G	T	ENSMUST00000050630.13	1	ENSMUSG00000038954	missense	G/V	74	Supt3	ENSMUST00000050630.13:c.221G>T	ENSMUSP00000050783.7:p.Gly74Val	H-2-Kb	8	7	5	SQLRVARV	SQLRGARV	SMM	311.702	892.771	2.864	74	0.216	348.489	1374.08	3.943	1855.39	352.04	3979	1438.4	892.7708467	311.7022951	724.0023903	344.9371732	M5	0.214285714	0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.198	74	69	18	0.260869565	17qB3	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.839540072	sgMsh2	cell line
chr17	38304994	38304994	T	C	ENSMUST00000213505.1	5	ENSMUSG00000054940	missense	T/A	156	Olfr137	ENSMUST00000213505.1:c.466A>G	ENSMUSP00000150173.1:p.Thr156Ala	H-2-Kb	8	7	5	CGFTASAL	CGFTTSAL	SMM	193.972	284.931	1.469	138	0.268	240.585	312.177	1.298	583.32	395.88	277.8	199.5	284.9311953	193.9724271	339.4220093	281.6696149	M5	1.185714286	1.185714286	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.278	138	0	0	NA	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr17	37751964	37751964	A	G	ENSMUST00000174675.3	5	ENSMUSG00000060017	missense	I/V	37	Olfr121	ENSMUST00000174675.3:c.109A>G	ENSMUSP00000133865.3:p.Ile37Val	H-2-Kb	8	4	8	CFLLFTLV	CFLLFTLI	SMM	253.945	461.041	1.816	410	0.227	479.578	724.227	1.51	850.4	581.81	2002	2533.9	461.0414792	253.9451951	598.0534499	377.3462166	M5	2.928571429	2.928571429	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.221	410	0	0	NA	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.937062404	sgMsh2	cell line
chr17	30761096	30761096	GT	G	ENSMUST00000236140.1	NA	ENSMUSG00000033826	FS	F/X	3035	Dnah8	ENSMUST00000236140.1:c.9108del	ENSMUSP00000157469.1:p.Phe3036LeufsTer5	H-2-Kb	8	5	8	TSLDLVFL	TSLDLVFF	SMM	245.89	3997.054	16.255	121	0.19	452.067	3837.777	8.489	5159.69	706.65	3678.5	633.9	3997.053856	245.8895091	3394.220093	270.2340064	M5	2.014285714	2.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.191	121	0	0	NA	17qA3.3	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.809859363	sgMsh2	cell line
chr17	34135711	34135711	T	C	ENSMUST00000042121.10	1	ENSMUSG00000037649	missense	L/P	14	H2-DMa	ENSMUST00000042121.10:c.41T>C	ENSMUSP00000037088.9:p.Leu14Pro	H-2-Kb	8	7	5	VLLRPLRL	VLLRLLRL	SMM	450.547	178.953	0.397	104	0.202	461.74	172.406	0.373	294.72	1135.8	114	451.7	178.9534189	450.5468939	165.8593656	471.7805149	M5	0.657142857	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.209	104	0	0	NA	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.886181188	sgMsh2	cell line
chr17	5712447	5712447	AT	A	ENSMUST00000089185.5	1	ENSMUSG00000034265	FS	F/X	209	Zdhhc14	ENSMUST00000089185.5:c.631del	ENSMUSP00000086589.4:p.Tyr211IlefsTer10	H-2-Kb	9	7	7	RNYRFFICL	RNYRFFYMF	NetMHCpan	6.8	18.7	2.75	87	0.23	22.441	28.629	1.276	16.93	7.72	18.7	6.8	38.55760057	37.16293451	54.85926694	40.01750427	M5	1.514285714	1.514285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.215	87	0	0	NA	17qA1	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.911621796	sgMsh2	cell line
chr17	37701005	37701005	AT	A	ENSMUST00000213732.1	5	ENSMUSG00000059964	FS	F/X	112	Olfr119	ENSMUST00000213732.1:c.339del	ENSMUSP00000150099.1:p.Phe113LeufsTer3	H-2-Kb	9	4	9	TQMFFFTFL	TQMFFFTFF	NetMHCpan	14.3	117.3	8.203	378	0.296	93.963	252.605	2.688	250.38	40.61	117.3	14.3	271.7127388	161.1053638	254.8296748	147.3160278	M5	2.314285714	2.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.283	378	0	0	NA	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr17	20994614	20994614	T	C	ENSMUST00000237195.1	NA	ENSMUSG00000045575	missense	I/V	25	Vmn1r233	ENSMUST00000237195.1:c.73A>G	ENSMUSP00000158452.1:p.Ile25Val	H-2-Kb	9	3	9	VIILFQTMV	VIILFQTMI	NetMHC	46.04	63.11	1.371	159	0.258	142.11	130.172	0.916	63.11	46.04	89.3	129.3	171.044849	154.920896	194.6480243	188.4733717	M5	1.857142857	2.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.264	159	0	0	NA	17qA3.2	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr17	44991768	44991768	G	T	ENSMUST00000050630.13	1	ENSMUSG00000038954	missense	G/V	74	Supt3	ENSMUST00000050630.13:c.221G>T	ENSMUSP00000050783.7:p.Gly74Val	H-2-Kb	9	6	6	VSQLRVARV	VSQLRGARV	NetMHC	46.24	140.54	3.039	74	0.216	247.023	411.993	1.668	140.54	46.24	676.5	247.3	442.7004873	284.5181656	381.2852457	246.7459312	M5	0.214285714	0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.198	74	69	18	0.260869565	17qB3	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.839540072	sgMsh2	cell line
chr17	13225949	13225949	T	C	ENSMUST00000080647.4	1	ENSMUSG00000073458	missense	C/R	138	Smok2a	ENSMUST00000080647.4:c.412T>C	ENSMUSP00000094432.2:p.Cys138Arg	H-2-Kb	9	8	4	INYRHNQGI	INYCHNQGI	NetMHCpan	30	54.9	1.83	855	0.127	105.887	125.761	1.188	188.04	80.78	54.9	30	133.6934098	144.9138851	117.8284053	130.9935766	M5	-1.7	-1.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.125	855	0	0	NA	17qA1	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.530012672	sgMsh2	cell line
chr16	97951903	97951903	CT	C	ENSMUST00000113734.8	2	ENSMUSG00000046962	FS	K/X	421	Zbtb21	ENSMUST00000113734.8:c.1263del	ENSMUSP00000109363.2:p.Ala422LeufsTer31	H-2-Kb	9	20	0	SSLIASGPL	NA	NetMHC	110.71	NA	NA	97	0.361	293.067	NA	NA	NA	110.71	NA	223.8	NA	362.3347605	NA	466.9280884	M5	1.585714286	1.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.342	97	43	12	0.279069767	16qC4	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	sgMsh2	cell line
chr17	37751964	37751964	A	G	ENSMUST00000174675.3	5	ENSMUSG00000060017	missense	I/V	37	Olfr121	ENSMUST00000174675.3:c.109A>G	ENSMUSP00000133865.3:p.Ile37Val	H-2-Kb	9	11	1	VLLMFLVSL	ILLMFLVSL	NetMHC	127.87	166.59	1.303	410	0.227	185.568	235.147	1.267	166.59	127.87	243.7	206.3	294.5167504	200.0368468	226.5948317	171.0999962	M5	2.785714286	3.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.221	410	0	0	NA	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.937062404	sgMsh2	cell line
chr17	32774731	32774731	T	C	ENSMUST00000159086.9	1	ENSMUSG00000024298	missense	K/R	490	Zfp871	ENSMUST00000159086.9:c.1469A>G	ENSMUSP00000127178.1:p.Lys490Arg	H-2-Kb	9	7	5	SQFQRHKAL	SQFQKHKAL	NetMHC	137.22	270.99	1.975	106	0.16	206.635	341.188	1.651	270.99	137.22	269.6	151.3	460.3731641	307.6876041	411.386466	261.9690589	M5	-0.957142857	-0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.154	106	59	14	0.237288136	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.652975612	sgMsh2	cell line
chr17	37701005	37701005	AT	A	ENSMUST00000213732.1	5	ENSMUSG00000059964	FS	F/X	112	Olfr119	ENSMUST00000213732.1:c.339del	ENSMUSP00000150099.1:p.Phe113LeufsTer3	H-2-Kb	9	5	8	QMFFFTFLV	QMFFFTFFG	SMM	56.378	416.016	7.379	378	0.296	130.663	1702.349	13.029	3181.25	152.62	2823.6	205	416.0159675	56.37804345	581.0988286	108.7051201	M5	2.642857143	2.642857143	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.283	378	0	0	NA	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr17	52894041	52894041	A	T	ENSMUST00000039366.10	1	ENSMUSG00000035580	missense	Q/L	501	Kcnh8	ENSMUST00000039366.10:c.1502A>T	ENSMUSP00000049206.9:p.Gln501Leu	H-2-Kb	9	3	9	FIRVHHLPL	FIRVHHLPQ	NetMHC	175.02	10465.78	59.798	123	0.301	216.13	5778.924	26.738	10465.78	175.02	13812	231.3	1049.808295	200.9601749	1092.068801	232.4074256	M5	-0.1	0.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.299	123	0	0	NA	17qC	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr17	56632320	56632320	T	G	ENSMUST00000112979.3	1	ENSMUSG00000040828	missense	F/V	50	Catsperd	ENSMUST00000112979.3:c.148T>G	ENSMUSP00000108603.2:p.Phe50Val	H-2-Kb	9	3	9	LFYAFPNTV	LFYAFPNTF	NetMHCpan	233	338.6	1.453	140	0.179	281.738	333.442	1.184	338.69	258.61	338.6	233	228.6177783	304.8667072	328.2842143	424.864065	M5	0.242857143	0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.195	140	0	0	NA	17qD	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.826819768	sgMsh2	cell line
chr17	20502548	20502548	A	G	ENSMUST00000233982.1	NA	ENSMUSG00000043537	missense	I/V	84	Vmn1r225	ENSMUST00000233982.1:c.250A>G	ENSMUSP00000156633.1:p.Ile84Val	H-2-Kb	9	9	3	KHVLYIQRL	KHILYIQRL	NetMHCpan	229.1	133.9	0.584	187	0.257	487.214	317.745	0.652	155.48	277.4	133.9	229.1	489.9028884	716.3248211	480.0096849	697.02764	M5	1	1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.249	187	0	0	NA	17qA3.2	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr17	19053653	19053653	C	A	ENSMUST00000170424.2	5	ENSMUSG00000096717	missense	S/Y	54	Vmn2r98	ENSMUST00000170424.2:c.161C>A	ENSMUSP00000131261.1:p.Ser54Tyr	H-2-Kb	9	7	5	HTFYYLKKM	HTFYSLKKM	NetMHCpan	162.4	2676.5	16.481	128	0.219	315.655	1812.209	5.741	2171.47	303.78	2676.5	162.4	1432.550696	345.2311699	1452.947761	327.5291816	M5	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.228	128	0	0	NA	17qA3.2	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.966743114	sgMsh2	cell line
chr17	18929203	18929203	T	G	ENSMUST00000168710.2	5	ENSMUSG00000091491	missense	I/M	284	Vmn2r97	ENSMUST00000168710.2:c.852T>G	ENSMUSP00000129313.1:p.Ile284Met	H-2-Kb	9	10	2	IMRNIEQRL	IIRNIEQRL	SMM	377.668	845.493	2.239	384	0.268	431.344	837.911	1.943	800.92	461.59	1635	1041.5	845.4929682	377.6678362	830.3286055	401.0975415	M5	-1.6	-0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.252	384	0	0	NA	17qA3.2	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr17	34135711	34135711	T	C	ENSMUST00000042121.10	1	ENSMUSG00000037649	missense	L/P	14	H2-DMa	ENSMUST00000042121.10:c.41T>C	ENSMUSP00000037088.9:p.Leu14Pro	H-2-Kb	9	6	6	AVLLRPLRL	AVLLRLLRL	SMM	353.273	150.006	0.425	104	0.202	413.976	150.031	0.362	118.9	469.65	167.1	478.9	150.006473	353.2726369	150.0548372	358.3026333	M5	0.657142857	1.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.209	104	0	0	NA	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.886181188	sgMsh2	cell line
chr17	20687637	20687637	G	T	ENSMUST00000232708.1	NA	ENSMUSG00000042848	missense	D/Y	44	Vmn1r226	ENSMUST00000232708.1:c.130G>T	ENSMUSP00000156517.1:p.Asp44Tyr	H-2-Kb	9	6	6	TMKKIYMIL	TMKKIDMIL	SMMPMBEC	378.66	2340.184	6.18	144	0.257	495.583	4735.419	9.555	9617.94	2080.05	6632.2	550.5	2838.63792	440.6664633	2340.183969	378.6604965	M5	0.8	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.267	144	0	0	NA	17qA3.2	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr19	4623890	4623890	GA	G	ENSMUST00000025823.5	1	ENSMUSG00000024889	FS	F/X	209	Rce1	ENSMUST00000025823.5:c.627del	ENSMUSP00000025823.3:p.His210ThrfsTer45	H-2-Db	9	6	7	FGVAHFTTL	FGVAHFHHI	NetMHC	78.17	566.54	7.248	138	0.159	379.077	1263.979	3.334	566.54	78.17	279.3	137.9	2796.533332	844.5395646	1961.417293	620.2546088	M5	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.162	138	50	0	0	19qA	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	sgMsh2	cell line
chr18	37680939	37680939	G	T	ENSMUST00000192931.1	1	ENSMUSG00000103037	missense	S/I	161	Pcdhgb1	ENSMUST00000192931.1:c.482G>T	ENSMUSP00000141348.1:p.Ser161Ile	H-2-Db	9	3	9	NSLKMYTVI	NSLKMYTVS	NetMHC	158.89	19903.22	125.264	235	0.523	356.594	9153.28	25.669	19903.22	158.89	14990.9	524.3	2996.539453	391.3992598	3315.660076	321.7881152	M5	1.214285714	1.214285714	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.525	235	4	0	0	18qB3	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	2	1	sgMsh2	cell line
chr18	37021442	37021442	T	C	ENSMUST00000047614.3	1	ENSMUSG00000103310	missense	Y/H	405	Pcdha12	ENSMUST00000047614.3:c.1213T>C	ENSMUSP00000047609.1:p.Tyr405His	H-2-Db	9	5	7	STFKNYHSL	STFKNYYSL	NetMHCpan	36.5	34.8	0.953	182	0.236	221.131	155.833	0.705	81.22	180.1	34.8	36.5	270.7821299	272.659102	230.4464382	262.162156	M5	-0.871428571	-0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.24	182	0	0	NA	18qB2	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr17	84697532	84697532	T	C	ENSMUST00000045714.14	1	ENSMUSG00000024254	missense	F/L	576	Abcg8	ENSMUST00000045714.14:c.1726T>C	ENSMUSP00000035246.8:p.Phe576Leu	H-2-Db	9	10	2	GLMINLDNL	GFMINLDNL	NetMHCpan	367.1	1384.4	3.771	103	0.155	482.343	875.659	1.815	1955.18	698.93	1384.4	367.1	313.0545354	536.5621085	366.91883	428.1244195	M5	0.5	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.168	103	0	0	NA	17qE4	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.712337031	sgMsh2	cell line
chr17	84697532	84697532	T	C	ENSMUST00000045714.14	1	ENSMUSG00000024254	missense	F/L	576	Abcg8	ENSMUST00000045714.14:c.1726T>C	ENSMUSP00000035246.8:p.Phe576Leu	H-2-Kb	8	4	8	SFYLTAGL	SFYLTAGF	NetMHC	15.37	172.25	11.207	103	0.155	31.057	352.868	11.362	172.25	15.37	298.6	61	482.7696948	29.69887511	407.1364636	32.41455024	M5	1.4	1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.168	103	0	0	NA	17qE4	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.712337031	sgMsh2	cell line
chr18	61697778	61697778	T	C	ENSMUST00000025472.6	1	ENSMUSG00000024579	missense	Y/C	341	Pcyox1l	ENSMUST00000025472.6:c.1022A>G	ENSMUSP00000025472.1:p.Tyr341Cys	H-2-Kb	8	5	7	VSLVHGCL	VSLVHGYL	NetMHC	42.26	7.17	0.17	112	0.196	48.333	15.42	0.319	7.17	42.26	15	81.6	15.83944645	48.27696948	17.44777291	48.38825938	M5	1.414285714	1.471428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.208	112	140	40	0.285714286	18qE1	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	0.881941086	sgMsh2	cell line
chr18	75519813	75519813	T	C	ENSMUST00000165559.2	5	ENSMUSG00000052928	missense	K/E	458	Ctif	ENSMUST00000165559.2:c.1372A>G	ENSMUSP00000129974.1:p.Lys458Glu	H-2-Kb	8	5	7	FAFTAAEL	FAFTAAKL	NetMHC	81.29	76.52	0.941	45	0.2	124.469	90.585	0.728	76.52	81.29	76	111.3	104.6501849	137.6385219	105.6185011	153.0171117	M5	1.114285714	1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.204	45	6	3	0.5	18qE3	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	0.864980681	sgMsh2	cell line
chr18	47248715	47248715	G	T	ENSMUST00000019791.13	1	ENSMUSG00000019647	missense	P/T	922	Sema6a	ENSMUST00000019791.13:c.2764C>A	ENSMUSP00000019791.7:p.Pro922Thr	H-2-Kb	8	8	4	RSYTTNSL	RSYPTNSL	NetMHC	93.98	244.83	2.605	88	0.239	116.078	230.832	1.989	244.83	93.98	226.3	149.3	193.5263029	115.2762924	235.3639803	116.8799454	M5	-0.571428571	-0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.242	88	0	0	NA	18qC	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr18	56491908	56491908	A	C	ENSMUST00000237355.1	NA	ENSMUSG00000001700	missense	I/L	358	Gramd3	ENSMUST00000237355.1:c.1072A>C	ENSMUSP00000157710.1:p.Ile358Leu	H-2-Kb	8	4	8	AIIVCALL	AIIVCALI	NetMHC	138.87	1449.26	10.436	77	0.234	182.51	1386.404	7.596	1449.26	138.87	2402.7	511.3	1323.548926	204.0515979	924.1447486	160.9681675	M5	3.585714286	3.585714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.258	77	10	0	0	18qD3	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr19	4271293	4271293	C	T	ENSMUST00000056888.12	1	ENSMUSG00000005986	missense	S/N	425	Ankrd13d	ENSMUST00000056888.12:c.1274G>A	ENSMUSP00000053783.6:p.Ser425Asn	H-2-Kb	8	6	6	ARITFNNL	ARITFSNL	NetMHC	150.52	49.13	0.326	202	0.183	154.3	92.311	0.598	49.13	150.52	253.9	536	93.0550614	150.5705372	91.56721386	158.0301673	M5	-0.157142857	-0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.192	202	9	2	0.222222222	19qA	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	sgMsh2	cell line
chr19	6071366	6071366	C	T	ENSMUST00000025711.12	1	ENSMUSG00000024797	missense	V/M	209	Vps51	ENSMUST00000025711.12:c.625G>A	ENSMUSP00000025711.5:p.Val209Met	H-2-Kb	8	11	1	MLQQYQHL	VLQQYQHL	SMM	169.723	79.568	0.469	103	0.204	237.403	85.462	0.36	52.88	281.28	106.4	327.7	79.56828547	169.7227266	91.35661511	193.5263029	M5	-1.057142857	-1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.209	103	68	6	0.088235294	19qA	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.886181188	sgMsh2	cell line
chr17	83477824	83477824	T	C	ENSMUST00000096766.11	1	ENSMUSG00000032624	missense	L/P	875	Eml4	ENSMUST00000096766.11:c.2624T>C	ENSMUSP00000094528.4:p.Leu875Pro	H-2-Kb	8	5	7	SIIQWKPV	SIIQWKLV	SMMPMBEC	267.141	735.766	2.754	100	0.17	337.819	1037.14	3.07	1227.56	355.94	1662.3	657.1	846.7203545	319.6980594	735.7664827	267.1406633	M5	0.471428571	0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.19	100	110	22	0.2	17qE4	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.805619261	sgMsh2	cell line
chr18	37941753	37941753	A	G	ENSMUST00000043498.8	1	ENSMUSG00000024454	missense	S/P	312	Hdac3	ENSMUST00000043498.8:c.934T>C	ENSMUSP00000037981.7:p.Ser312Pro	H-2-Kb	8	6	6	WTYETPLL	WTYETSLL	SMMPMBEC	359.534	238.638	0.664	244	0.254	430.684	272.762	0.633	289.23	493.46	348.5	494.9	256.2949211	367.908651	238.6382195	359.5340277	M5	-0.028571429	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.248	244	273	48	0.175824176	18qB3	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr19	5336070	5336070	AC	A	ENSMUST00000043380.4	1	ENSMUSG00000038498	FS	H/X	110	Catsper1	ENSMUST00000043380.4:c.334del	ENSMUSP00000045430.3:p.Ala113LeufsTer182	H-2-Kb	8	140	0	ISIIAPQV	NA	SMM	432.255	NA	NA	200	0.215	485.488	NA	NA	NA	526.61	NA	568.7	NA	432.2549746	NA	444.3651588	M5	1.3	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.218	200	0	0	NA	19qA	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	sgMsh2	cell line
chr18	37021442	37021442	T	C	ENSMUST00000047614.3	1	ENSMUSG00000103310	missense	Y/H	405	Pcdha12	ENSMUST00000047614.3:c.1213T>C	ENSMUSP00000047609.1:p.Tyr405His	H-2-Kb	8	8	4	KNYHSLVL	KNYYSLVL	NetMHCpan	150	57	0.38	182	0.236	428.416	356.888	0.833	345.02	673.56	57	150	368.7567681	366.2182643	518.4895408	490.6140712	M5	0.428571429	0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.24	182	0	0	NA	18qB2	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr17	87717533	87717533	A	G	ENSMUST00000024967.13	1	ENSMUSG00000024151	missense	N/S	613	Msh2	ENSMUST00000024967.13:c.1838A>G	ENSMUSP00000024967.7:p.Asn613Ser	H-2-Kb	8	4	8	VSFAHVSS	VSFAHVSN	SMM	72.4	63.203	0.873	511	0.072	302.725	552.478	1.825	2397.03	700.89	1016.7	488.3	63.20333573	72.40023903	88.25513833	117.1493815	M5	0.457142857	1.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.073	511	147	4	0.027210884	17qE4	chr17-87672302-87723786	12.82082004	9.82082004	3	0.99	4.197700362	NA	1	0.3095274	sgMsh2	cell line
chr19	5336070	5336070	AC	A	ENSMUST00000043380.4	1	ENSMUSG00000038498	FS	H/X	110	Catsper1	ENSMUST00000043380.4:c.334del	ENSMUSP00000045430.3:p.Ala113LeufsTer182	H-2-Kb	8	60	0	INNTMRGL	NA	SMM	218.645	NA	NA	200	0.215	495.63	NA	NA	NA	903.69	NA	746.5	NA	218.6452264	NA	244.7597495	M5	-0.985714286	-0.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.218	200	0	0	NA	19qA	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	sgMsh2	cell line
chr18	37473936	37473936	T	C	ENSMUST00000050034.2	NA	ENSMUSG00000047033	missense	F/L	74	Pcdhb15	ENSMUST00000050034.2:c.220T>C	ENSMUSP00000059598.1:p.Phe74Leu	H-2-Kb	8	10	2	RLLLLSPL	RFLLLSPL	SMMPMBEC	429.279	192.637	0.449	93	0.172	459.126	249.124	0.543	305.61	971.72	348.4	437.7	163.5836898	480.5515695	192.6371303	429.2793522	M5	2.371428571	2.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.171	93	0	0	NA	18qB3	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	0.725057335	sgMsh2	cell line
chr18	37021442	37021442	T	C	ENSMUST00000047614.3	1	ENSMUSG00000103310	missense	Y/H	405	Pcdha12	ENSMUST00000047614.3:c.1213T>C	ENSMUSP00000047609.1:p.Tyr405His	H-2-Kb	8	6	6	TFKNYHSL	TFKNYYSL	SMM	267.756	194.42	0.726	182	0.236	366.723	239.62	0.653	359	1171.72	262.6	447.2	194.4195797	267.7564861	216.6406749	286.246378	M5	-0.871428571	-0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.24	182	0	0	NA	18qB2	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr18	37021442	37021442	T	C	ENSMUST00000047614.3	1	ENSMUSG00000103310	missense	Y/H	405	Pcdha12	ENSMUST00000047614.3:c.1213T>C	ENSMUSP00000047609.1:p.Tyr405His	H-2-Kb	9	5	7	STFKNYHSL	STFKNYYSL	NetMHCpan	15.4	13.9	0.903	182	0.236	61.313	45.651	0.745	16.12	22.6	13.9	15.4	75.18132925	100.0253316	87.34740358	104.5321782	M5	-0.871428571	-0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.24	182	0	0	NA	18qB2	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr19	5336070	5336070	AC	A	ENSMUST00000043380.4	1	ENSMUSG00000038498	FS	H/X	110	Catsper1	ENSMUST00000043380.4:c.334del	ENSMUSP00000045430.3:p.Ala113LeufsTer182	H-2-Kb	9	181	0	LALKFSAKL	NA	NetMHC	22.93	NA	NA	200	0.215	106.573	NA	NA	NA	22.93	NA	26.4	NA	191.9154771	NA	186.7454375	M5	0.514285714	1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.218	200	0	0	NA	19qA	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	sgMsh2	cell line
chr19	6071366	6071366	C	T	ENSMUST00000025711.12	1	ENSMUSG00000024797	missense	V/M	209	Vps51	ENSMUST00000025711.12:c.625G>A	ENSMUSP00000025711.5:p.Val209Met	H-2-Kb	9	10	2	AMLQQYQHL	AVLQQYQHL	NetMHC	38.61	44.27	1.147	103	0.204	105.972	175.274	1.654	44.27	38.61	101.6	97.1	248.9487787	114.8444468	263.7849417	129.7926202	M5	-1.057142857	-0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.209	103	68	6	0.088235294	19qA	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.886181188	sgMsh2	cell line
chr19	3948632	3948632	A	G	ENSMUST00000162708.6	1	ENSMUSG00000036908	missense	K/R	517	Unc93b1	ENSMUST00000162708.6:c.1550A>G	ENSMUSP00000124272.1:p.Lys517Arg	H-2-Kb	9	4	8	SSLPMKARL	SSLPMKAKL	NetMHC	44.92	155.55	3.463	68	0.294	188.011	364.422	1.938	155.55	44.92	303	126.5	455.1033161	249.5226649	425.8434778	282.000579	M5	0.185714286	0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.305	68	24	15	0.625	19qA	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	sgMsh2	cell line
chr19	4623890	4623890	GA	G	ENSMUST00000025823.5	1	ENSMUSG00000024889	FS	F/X	209	Rce1	ENSMUST00000025823.5:c.627del	ENSMUSP00000025823.3:p.His210ThrfsTer45	H-2-Kb	9	6	7	FGVAHFTTL	FGVAHFHHI	NetMHCpan	50.7	186.1	3.671	138	0.159	234.465	853.581	3.641	718.04	82.34	186.1	50.7	1191.543769	453.0123063	989.1223154	386.5894518	M5	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.162	138	50	0	0	19qA	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	sgMsh2	cell line
chr17	84697532	84697532	T	C	ENSMUST00000045714.14	1	ENSMUSG00000024254	missense	F/L	576	Abcg8	ENSMUST00000045714.14:c.1726T>C	ENSMUSP00000035246.8:p.Phe576Leu	H-2-Kb	9	3	9	NSFYLTAGL	NSFYLTAGF	NetMHC	85.47	432.59	5.061	103	0.155	225.767	521.843	2.311	432.59	85.47	325	89.2	611.0967866	362.3347605	709.9863514	410.4403034	M5	1.4	1.4	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.168	103	0	0	NA	17qE4	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.712337031	sgMsh2	cell line
chr18	71682179	71682179	C	T	ENSMUST00000114943.10	1	ENSMUSG00000060534	missense	D/N	375	Dcc	ENSMUST00000114943.10:c.1123G>A	ENSMUSP00000110593.3:p.Asp375Asn	H-2-Kb	9	7	5	VIPSNYFQI	VIPSDYFQI	NetMHC	117.25	765.54	6.529	123	0.187	245.899	656.978	2.672	765.54	117.25	949	251.3	548.4158525	240.4971865	537.3410257	285.9235978	M5	-0.485714286	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.191	123	0	0	NA	18qE2	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	0.809859363	sgMsh2	cell line
chr17	87717533	87717533	A	G	ENSMUST00000024967.13	1	ENSMUSG00000024151	missense	N/S	613	Msh2	ENSMUST00000024967.13:c.1838A>G	ENSMUSP00000024967.7:p.Asn613Ser	H-2-Kb	9	4	8	VSFAHVSSA	VSFAHVSNA	NetMHCpan	97.1	60.3	0.621	511	0.072	246.187	172.601	0.701	61.9	173.77	60.3	97.1	341.2793414	397.2921646	283.3022345	318.6031021	M5	0.828571429	1.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.073	511	147	4	0.027210884	17qE4	chr17-87672302-87723786	12.82082004	9.82082004	3	0.99	4.197700362	NA	1	0.3095274	sgMsh2	cell line
chr17	84697532	84697532	T	C	ENSMUST00000045714.14	1	ENSMUSG00000024254	missense	F/L	576	Abcg8	ENSMUST00000045714.14:c.1726T>C	ENSMUSP00000035246.8:p.Phe576Leu	H-2-Kb	9	4	8	SFYLTAGLM	SFYLTAGFM	NetMHC	185.37	344.02	1.856	103	0.155	368.163	542.485	1.473	344.02	185.37	582.5	462.1	502.4698412	274.2268658	867.4610828	521.4948213	M5	1.271428571	1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.168	103	0	0	NA	17qE4	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.712337031	sgMsh2	cell line
chr17	57450038	57450038	T	C	ENSMUST00000086763.12	1	ENSMUSG00000004730	missense	L/P	765	Adgre1	ENSMUST00000086763.12:c.2294T>C	ENSMUSP00000083971.5:p.Leu765Pro	H-2-Kb	9	5	7	CAFGYGPPV	CAFGYGLPV	NetMHCpan	162.5	159.8	0.983	58	0.328	222.987	320.635	1.438	334.29	190.64	159.8	162.5	306.9799422	255.3347944	378.6604965	325.2744865	M5	0.242857143	0.485714286	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.327	58	0	0	NA	17qD	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr18	37680939	37680939	G	T	ENSMUST00000192931.1	1	ENSMUSG00000103037	missense	S/I	161	Pcdhgb1	ENSMUST00000192931.1:c.482G>T	ENSMUSP00000141348.1:p.Ser161Ile	H-2-Kb	9	10	2	VIPNPHFSL	VSPNPHFSL	NetMHC	211.65	119.37	0.564	235	0.523	410.119	267.215	0.652	119.37	211.65	107.8	235.3	415.0591573	584.9382211	522.696991	774.9077422	M5	-0.585714286	0.228571429	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.525	235	4	0	0	18qB3	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	2	1	sgMsh2	cell line
chr19	5336070	5336070	AC	A	ENSMUST00000043380.4	1	ENSMUSG00000038498	FS	H/X	110	Catsper1	ENSMUST00000043380.4:c.334del	ENSMUSP00000045430.3:p.Ala113LeufsTer182	H-2-Kb	9	43	0	VNLCPTPPL	NA	SMM	191.034	NA	NA	200	0.215	220.98	NA	NA	NA	228.86	NA	213.1	NA	191.0337056	NA	262.57296	M5	0.657142857	0.657142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.218	200	0	0	NA	19qA	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	sgMsh2	cell line
chr18	5063222	5063222	C	T	ENSMUST00000126977.7	5	ENSMUSG00000024236	missense	S/F	831	Svil	ENSMUST00000126977.7:c.2492C>T	ENSMUSP00000115078.1:p.Ser831Phe	H-2-Kb	9	6	6	KLISFFPTV	KLISFSPTV	NetMHCpan	74.3	576.3	7.756	77	0.247	393.149	1306.593	3.323	1067.54	244.16	576.3	74.3	1545.645878	542.1381881	2519.126636	711.6230389	M5	1.6	1.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.24	77	40	11	0.275	18qA1	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr19	5336070	5336070	AC	A	ENSMUST00000043380.4	1	ENSMUSG00000038498	FS	H/X	110	Catsper1	ENSMUST00000043380.4:c.334del	ENSMUSP00000045430.3:p.Ala113LeufsTer182	H-2-Kb	9	32	0	IIPTKMTPI	NA	NetMHC	258.37	NA	NA	200	0.215	447.852	NA	NA	NA	258.37	NA	377.8	NA	680.9418088	NA	517.9048762	M5	-0.3	0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.218	200	0	0	NA	19qA	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	sgMsh2	cell line
chr18	25340381	25340381	A	G	ENSMUST00000097643.9	5	ENSMUSG00000033632	missense	N/S	414	AW554918	ENSMUST00000097643.9:c.1241A>G	ENSMUSP00000095248.3:p.Asn414Ser	H-2-Kb	9	10	2	YSWLRTQAM	YNWLRTQAM	NetMHCpan	246.9	389.9	1.579	72	0.292	285.227	354.619	1.243	397.05	289.33	389.9	246.9	301.3769268	283.2109234	319.3375581	287.2433612	M5	-0.3	-0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.286	72	12	5	0.416666667	18qA2	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr18	44847844	44847844	A	G	ENSMUST00000037763.10	1	ENSMUSG00000034653	missense	Q/R	502	Ythdc2	ENSMUST00000037763.10:c.1505A>G	ENSMUSP00000048340.7:p.Gln502Arg	H-2-Kb	9	9	3	FARVFHLIL	FAQVFHLIL	SMM	224.962	422.776	1.879	122	0.197	340.8	495.95	1.455	462.4	364.46	529.5	447.6	422.7756832	224.9624328	563.9622051	317.1392538	M5	1.628571429	1.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.217	122	15	0	0	18qB3	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	0.920101999	sgMsh2	cell line
chr18	37941753	37941753	A	G	ENSMUST00000043498.8	1	ENSMUSG00000024454	missense	S/P	312	Hdac3	ENSMUST00000043498.8:c.934T>C	ENSMUSP00000037981.7:p.Ser312Pro	H-2-Kb	9	4	8	RCWTYETPL	RCWTYETSL	SMMPMBEC	408.555	698.634	1.71	244	0.254	457.95	789.442	1.724	880.25	477.4	638	438.5	1244.829868	714.6773197	698.6344547	408.5545015	M5	-0.7	-0.7	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.248	244	273	48	0.175824176	18qB3	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr18	75519813	75519813	T	C	ENSMUST00000165559.2	5	ENSMUSG00000052928	missense	K/E	458	Ctif	ENSMUST00000165559.2:c.1372A>G	ENSMUSP00000129974.1:p.Lys458Glu	H-2-Kb	9	3	9	RSFAFTAAE	RSFAFTAAK	SMM	476.552	1897.186	3.981	45	0.2	497.378	1583.55	3.184	1412.21	511.42	1327.6	1067	1897.186388	476.5516746	1754.890407	483.3369531	M5	0.971428571	1.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.204	45	6	3	0.5	18qE3	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	0.864980681	sgMsh2	cell line
chr18	24017798	24017798	CA	C	ENSMUST00000066497.11	1	ENSMUSG00000051469	FS	L/X	97	Zfp24	ENSMUST00000066497.11:c.290del	ENSMUSP00000064637.5:p.Leu97TrpfsTer31	H-2-Kb	9	16	0	PSYPRSYRL	NA	SMM	79.82	NA	NA	87	0.172	228.119	NA	NA	NA	511.59	NA	329.4	NA	79.81968324	NA	126.8381795	M5	-1.457142857	-1.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.179	87	51	2	0.039215686	18qA2	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	0.758978146	sgMsh2	cell line
chr17	87679899	87679899	G	A	ENSMUST00000024967.13	1	ENSMUSG00000024151	missense	D/N	156	Msh2	ENSMUST00000024967.13:c.466G>A	ENSMUSP00000024967.7:p.Asp156Asn	H-2-Kb	9	10	2	VNGQRHVGV	VDGQRHVGV	SMMPMBEC	285.924	1183.723	4.14	673	0.061	489.72	7481.039	15.276	13020.7	594.75	16443.9	1559.9	1941.377536	384.6892055	1183.722765	285.9235978	M5	-0.514285714	-0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.059	673	112	43	0.383928571	17qE4	chr17-87672302-87723786	12.82082004	9.82082004	3	0.99	4.197700362	NA	1	0.250165981	sgMsh2	cell line
chr18	44847844	44847844	A	G	ENSMUST00000037763.10	1	ENSMUSG00000034653	missense	Q/R	502	Ythdc2	ENSMUST00000037763.10:c.1505A>G	ENSMUSP00000048340.7:p.Gln502Arg	H-2-Kb	9	7	5	DAFARVFHL	DAFAQVFHL	NetMHCpan	355	1026.1	2.89	122	0.197	436.068	1456.594	3.34	1952.22	609.77	1026.1	355	1233.417199	408.4228203	1679.770694	463.713778	M5	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.217	122	15	0	0	18qB3	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	0.920101999	sgMsh2	cell line
chr2	24953277	24953277	T	C	ENSMUST00000028350.8	1	ENSMUSG00000026974	missense	V/A	87	Zmynd19	ENSMUST00000028350.8:c.260T>C	ENSMUSP00000028350.3:p.Val87Ala	H-2-Db	9	10	2	VAHLNAVTV	VVHLNAVTV	NetMHC	8.32	172.04	20.678	101	0.287	28.28	261.657	9.252	172.04	8.32	293.9	20.7	229.4140437	35.86080216	327.0167515	51.23538453	M5	0.942857143	1.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.284	101	135	30	0.222222222	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Db	9	5	9	SNVVNHFFV	SNVVNHFFC	NetMHC	33.28	4264.52	128.141	281	0.171	169.809	3110.826	18.32	4264.52	33.28	4326.5	48.8	1957.131469	290.8171406	1310.901318	321.7881152	M5	1.642857143	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1708	281	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.724209315	sgMsh2	cell line
chr2	31207697	31207697	A	G	ENSMUST00000056433.6	1	ENSMUSG00000000194	missense	K/R	441	Gpr107	ENSMUST00000056433.6:c.1322A>G	ENSMUSP00000056739.5:p.Lys441Arg	H-2-Db	9	4	8	KAAINLARL	KAAINLAKL	NetMHCpan	101.4	102.4	1.01	163	0.307	325.555	235.751	0.724	167.68	392.01	102.4	101.4	303.8225469	298.2771604	364.3929785	352.8336521	M5	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.303	163	98	35	0.357142857	2qB	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr2	24687761	24687761	A	G	ENSMUST00000041342.11	1	ENSMUSG00000004113	missense	L/P	700	Cacna1b	ENSMUST00000041342.11:c.2099T>C	ENSMUSP00000037416.5:p.Leu700Pro	H-2-Db	9	4	8	TLFGNYTPL	TLFGNYTLL	NetMHCpan	113.2	549.8	4.857	82	0.256	218.505	712.435	3.26	2806.17	647.6	549.8	113.2	840.6592577	260.9876759	584.2113633	176.0232357	M5	-0.128571429	-1.27E-16	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.269	82	0	0	NA	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr2	22577871	22577871	T	C	ENSMUST00000044749.13	5	ENSMUSG00000025716	missense	V/A	1317	Myo3a	ENSMUST00000044749.13:c.3950T>C	ENSMUSP00000046329.7:p.Val1317Ala	H-2-Db	9	10	2	SAVTQNAPL	SVVTQNAPL	SMMPMBEC	357.742	2283.337	6.383	130	0.246	496.921	3714.743	7.476	9108.98	745.43	4105.8	474.3	3323.686094	519.5412082	2283.336925	357.7420571	M5	0.071428571	0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.243	130	0	0	NA	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr19	10207246	10207246	T	G	ENSMUST00000040372.13	1	ENSMUSG00000036372	missense	F/V	66	Tmem258	ENSMUST00000040372.13:c.196T>G	ENSMUSP00000044751.7:p.Phe66Val	H-2-Kb	8	11	1	VGVLFLLL	FGVLFLLL	NetMHC	19.2	194.49	10.13	184	0.168	37.169	178.287	4.797	194.49	19.2	271.5	29.8	162.0839455	44.53895263	157.666708	44.53895263	M5	3.114285714	3.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.161	184	369	62	0.16802168	19qA	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.682656321	sgMsh2	cell line
chr19	44973627	44973627	T	C	ENSMUST00000096053.4	1	ENSMUSG00000036097	missense	I/T	1081	Slf2	ENSMUST00000096053.4:c.3242T>C	ENSMUSP00000093758.3:p.Ile1081Thr	H-2-Kb	8	8	4	LTYTLLHL	LTYILLHL	NetMHCpan	21.4	34.2	1.598	419	0.146	46.318	52.591	1.135	36.2	30.3	34.2	21.4	74.08665723	69.6209588	68.98267002	62.33615346	M5	0.785714286	0.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.149	419	98	19	0.193877551	19qC3	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.631775105	sgMsh2	cell line
chr19	10207246	10207246	T	G	ENSMUST00000040372.13	1	ENSMUSG00000036372	missense	F/V	66	Tmem258	ENSMUST00000040372.13:c.196T>G	ENSMUSP00000044751.7:p.Phe66Val	H-2-Kb	8	4	8	VASLFMGV	VASLFMGF	NetMHC	37.83	202.78	5.36	184	0.168	128.266	476.977	3.719	202.78	37.83	174.7	78.4	810.4757034	178.1312026	751.173053	216.6406749	M5	1.9	1.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.161	184	369	62	0.16802168	19qA	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.682656321	sgMsh2	cell line
chr2	31207697	31207697	A	G	ENSMUST00000056433.6	1	ENSMUSG00000000194	missense	K/R	441	Gpr107	ENSMUST00000056433.6:c.1322A>G	ENSMUSP00000056739.5:p.Lys441Arg	H-2-Kb	8	5	7	AAINLARL	AAINLAKL	NetMHC	45.63	189.95	4.163	163	0.307	104.51	266.237	2.547	189.95	45.63	211.3	91.6	351.3500341	122.9532464	321.1737185	117.4194387	M5	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.303	163	98	35	0.357142857	2qB	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	8	13	1	VTFPHYWL	NA	NetMHCpan	13.9	NA	NA	281	0.171	31.617	NA	NA	NA	50.29	NA	13.9	NA	24.5323979	NA	38.70258739	M5	-0.157142857	-0.1	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1708	281	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.724209315	sgMsh2	cell line
chr2	23511388	23511388	T	G	ENSMUST00000132484.6	5	ENSMUSG00000026771	missense	E/D	369	Spopl	ENSMUST00000132484.6:c.1107A>C	ENSMUSP00000114974.1:p.Glu369Asp	H-2-Kb	8	9	3	VADAFRAL	VAEAFRAL	SMM	49.061	49.974	1.019	141	0.298	56.349	52.832	0.938	55.69	51.78	164.6	187.5	49.97352678	49.06140712	47.06954498	60.91720937	M5	0.571428571	0.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.302	141	50	16	0.32	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr19	31585637	31585637	CG	C	ENSMUST00000073581.5	1	ENSMUSG00000052920	FS	P/X	136	Prkg1	ENSMUST00000073581.5:c.408del	ENSMUSP00000073268.4:p.Val137TrpfsTer34	H-2-Kb	8	31	0	TSWKMGRL	NA	NetMHCpan	56.5	NA	NA	132	0.136	63.201	NA	NA	NA	69.55	NA	56.5	NA	82.36448742	NA	56.85124764	M5	-0.685714286	-0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.132	132	0	0	NA	19qC1	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.559693382	sgMsh2	cell line
chr2	31207697	31207697	A	G	ENSMUST00000056433.6	1	ENSMUSG00000000194	missense	K/R	441	Gpr107	ENSMUST00000056433.6:c.1322A>G	ENSMUSP00000056739.5:p.Lys441Arg	H-2-Kb	8	7	5	INLARLRL	INLAKLRL	NetMHCpan	74.3	156.3	2.104	163	0.307	185.389	321.112	1.732	315.08	157.11	156.3	74.3	327.1447838	213.6682534	353.7854762	227.3735801	M5	0.1	0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.303	163	98	35	0.357142857	2qB	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr19	44973627	44973627	T	C	ENSMUST00000096053.4	1	ENSMUSG00000036097	missense	I/T	1081	Slf2	ENSMUST00000096053.4:c.3242T>C	ENSMUSP00000093758.3:p.Ile1081Thr	H-2-Kb	8	5	7	AYYLTYTL	AYYLTYIL	NetMHC	157.88	325.67	2.063	419	0.146	364.856	839.945	2.302	325.67	157.88	374.5	180.5	1305.389154	569.823033	1434.630303	549.2119775	M5	0.328571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.149	419	98	19	0.193877551	19qC3	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.631775105	sgMsh2	cell line
chr19	44973627	44973627	T	C	ENSMUST00000096053.4	1	ENSMUSG00000036097	missense	I/T	1081	Slf2	ENSMUST00000096053.4:c.3242T>C	ENSMUSP00000093758.3:p.Ile1081Thr	H-2-Kb	8	6	6	YYLTYTLL	YYLTYILL	NetMHCpan	165.3	361.7	2.188	419	0.146	245.167	350.171	1.428	417.91	195.39	361.7	165.3	333.2268594	301.8144301	338.6413603	294.9442949	M5	1.057142857	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.149	419	98	19	0.193877551	19qC3	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.631775105	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	8	8	6	VNHFFVTF	VNHFFCDI	NetMHCpan	52.1	72.4	1.39	281	0.171	262.687	291.68	1.11	265.13	217.24	72.4	52.1	318.2291802	353.7854762	330.1718172	308.1342684	M5	0.742857143	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1708	281	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.724209315	sgMsh2	cell line
chr19	8931147	8931147	AC	A	ENSMUST00000096241.5	1	ENSMUSG00000071647	FS	P/X	100	Eml3	ENSMUST00000096241.5:c.302del	ENSMUSP00000093960.4:p.Pro101LeufsTer3	H-2-Kb	8	5	8	IVPSSGPL	IVPSSGPP	NetMHC	224.96	26425.71	117.468	141	0.184	321.776	15819.215	49.162	26425.71	224.96	22974	540.7	7494.454029	309.5565516	8664.430052	333.9950266	M5	0.4	0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.178	141	68	1	0.014705882	19qA	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.754738045	sgMsh2	cell line
chr2	24687761	24687761	A	G	ENSMUST00000041342.11	1	ENSMUSG00000004113	missense	L/P	700	Cacna1b	ENSMUST00000041342.11:c.2099T>C	ENSMUSP00000037416.5:p.Leu700Pro	H-2-Kb	8	5	7	LFGNYTPL	LFGNYTLL	SMMPMBEC	165.097	454.716	2.754	82	0.256	222.376	562.888	2.531	663.17	251.67	614.4	324.9	511.3755976	193.0812048	454.715753	165.0973111	M5	-0.128571429	-0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.269	82	0	0	NA	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr19	9006308	9006308	A	C	ENSMUST00000092956.3	1	ENSMUSG00000069833	missense	N/T	1652	Ahnak	ENSMUST00000092956.3:c.4955A>C	ENSMUSP00000090633.2:p.Asn1652Thr	H-2-Kb	8	10	2	VTLQKANI	VNLQKANI	SMMPMBEC	266.526	332.46	1.247	255	0.161	287.35	306.278	1.066	289.9	285.14	268.5	411.4	322.6561891	289.5609548	332.4604589	266.5262568	M5	-0.214285714	-0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.162	255	509	85	0.166994106	19qA	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.686896423	sgMsh2	cell line
chr19	34112952	34112952	GA	G	ENSMUST00000025685.7	1	ENSMUSG00000056078	FS	K/X	178	Lipm	ENSMUST00000025685.7:c.536del	ENSMUSP00000025685.6:p.Lys179ArgfsTer24	H-2-Kb	8	20	0	RAPPWALL	NA	NetMHCpan	207	NA	NA	239	0.146	415.089	NA	NA	NA	290.99	NA	207	NA	539.1877292	NA	614.8086937	M5	1.014285714	1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.15	239	0	0	NA	19qC1	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.636015206	sgMsh2	cell line
chr19	6927164	6927164	A	T	ENSMUST00000025908.7	1	ENSMUSG00000024957	missense	L/Q	244	Kcnk4	ENSMUST00000025908.7:c.731T>A	ENSMUSP00000025908.6:p.Leu244Gln	H-2-Kb	8	11	1	QAYFASVL	LAYFASVL	NetMHCpan	116.4	47.7	0.41	128	0.18	327.256	250.624	0.766	249.63	311.95	47.7	116.4	251.6170116	342.5626424	286.906244	584.4400914	M5	1.757142857	1.757142857	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.178	128	2	0	0	19qA	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.754738045	sgMsh2	cell line
chr19	54046882	54046882	C	A	ENSMUST00000036700.6	NA	ENSMUSG00000033717	missense	P/H	223	Adra2a	ENSMUST00000036700.6:c.668C>A	ENSMUSP00000036203.5:p.Pro223His	H-2-Kb	8	7	5	SFFAHCLI	SFFAPCLI	SMM	221.687	1238.055	5.585	73	0.137	278.718	1509.566	5.416	1724.04	357.12	1306.2	257.7	1238.055176	221.6868845	1712.931516	299.7367541	M5	2.142857143	2.142857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.131	73	7	1	0.142857143	19qD2	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.55545328	sgMsh2	cell line
chr19	10054643	10054643	A	G	ENSMUST00000115995.3	1	ENSMUSG00000024664	missense	H/R	266	Fads3	ENSMUST00000115995.3:c.797A>G	ENSMUSP00000111659.2:p.His266Arg	H-2-Kb	8	11	1	RQHLYFFL	HQHLYFFL	SMMPMBEC	135.75	290.228	2.138	268	0.134	153.427	437.353	2.851	1305.83	369.59	505.1	167.3	369.6068402	139.5532644	290.2284617	135.7500506	M5	0.742857143	0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.128	268	408	67	0.164215686	19qA	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.542732976	sgMsh2	cell line
chr19	54046882	54046882	C	A	ENSMUST00000036700.6	NA	ENSMUSG00000033717	missense	P/H	223	Adra2a	ENSMUST00000036700.6:c.668C>A	ENSMUSP00000036203.5:p.Pro223His	H-2-Kb	8	5	7	IGSFFAHC	IGSFFAPC	NetMHCpan	249.3	191.4	0.768	73	0.137	393.799	262.109	0.666	416.7	493.59	191.4	249.3	253.3611374	388.8123042	270.8569601	398.7860888	M5	0.785714286	1.071428571	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.131	73	7	1	0.142857143	19qD2	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.55545328	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	8	17	0	HYWLFLAL	NA	SMMPMBEC	198.948	NA	NA	281	0.171	324.952	NA	NA	NA	632.06	NA	372.1	NA	277.8049629	NA	198.9481935	M5	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1708	281	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.724209315	sgMsh2	cell line
chr19	16383254	16383254	G	A	ENSMUST00000025541.5	1	ENSMUSG00000024639	missense	V/M	314	Gnaq	ENSMUST00000025541.5:c.940G>A	ENSMUSP00000025541.5:p.Val314Met	H-2-Kb	8	6	6	ILKMFMDL	ILKMFVDL	NetMHCpan	249.7	319.7	1.28	202	0.302	388.374	474.546	1.222	1460.9	633.96	319.7	249.7	595.3056439	459.9811133	353.7854762	316.7670499	M5	0.971428571	1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.308	202	318	109	0.342767296	19qA	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	2	1	sgMsh2	cell line
chr19	44973627	44973627	T	C	ENSMUST00000096053.4	1	ENSMUSG00000036097	missense	I/T	1081	Slf2	ENSMUST00000096053.4:c.3242T>C	ENSMUSP00000093758.3:p.Ile1081Thr	H-2-Kb	9	5	7	AYYLTYTLL	AYYLTYILL	NetMHC	38.65	71.83	1.858	419	0.146	52.197	70.367	1.348	71.83	38.65	163.4	63.7	44.06664633	41.69749833	68.90488306	62.69746764	M5	1.057142857	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.149	419	98	19	0.193877551	19qC3	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.631775105	sgMsh2	cell line
chr2	24687761	24687761	A	G	ENSMUST00000041342.11	1	ENSMUSG00000004113	missense	L/P	700	Cacna1b	ENSMUST00000041342.11:c.2099T>C	ENSMUSP00000037416.5:p.Leu700Pro	H-2-Kb	9	4	8	TLFGNYTPL	TLFGNYTLL	NetMHCpan	51	85.6	1.678	82	0.256	88.814	134.728	1.517	105.68	60.07	85.6	51	193.2457716	151.7434661	163.775902	117.5574075	M5	-0.128571429	-1.27E-16	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.269	82	0	0	NA	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr19	6927164	6927164	A	T	ENSMUST00000025908.7	1	ENSMUSG00000024957	missense	L/Q	244	Kcnk4	ENSMUST00000025908.7:c.731T>A	ENSMUSP00000025908.6:p.Leu244Gln	H-2-Kb	9	9	3	FGQAYFASV	FGLAYFASV	NetMHC	69.21	25.06	0.362	128	0.18	485.11	182.98	0.377	25.06	69.21	27.7	76.4	409.3643322	1049.808295	338.259498	893.8198597	M5	0.714285714	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.178	128	2	0	0	19qA	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.754738045	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	9	13	1	VTFPHYWLF	NA	NetMHCpan	32	NA	NA	281	0.171	35.13	NA	NA	NA	109.74	NA	32	NA	35.08407252	NA	35.17628732	M5	0.342857143	0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1708	281	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.724209315	sgMsh2	cell line
chr19	54046882	54046882	C	A	ENSMUST00000036700.6	NA	ENSMUSG00000033717	missense	P/H	223	Adra2a	ENSMUST00000036700.6:c.668C>A	ENSMUSP00000036203.5:p.Pro223His	H-2-Kb	9	4	8	SIGSFFAHC	SIGSFFAPC	NetMHC	139.75	131.22	0.939	73	0.137	383.447	327.792	0.855	131.22	139.75	327.3	327.1	332.7438214	445.7691405	328.2842143	439.7947088	M5	0.785714286	1.414285714	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.131	73	7	1	0.142857143	19qD2	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.55545328	sgMsh2	cell line
chr19	44973627	44973627	T	C	ENSMUST00000096053.4	1	ENSMUSG00000036097	missense	I/T	1081	Slf2	ENSMUST00000096053.4:c.3242T>C	ENSMUSP00000093758.3:p.Ile1081Thr	H-2-Kb	9	4	8	QAYYLTYTL	QAYYLTYIL	NetMHCpan	118.9	287.1	2.415	419	0.146	148.952	306.938	2.061	357.17	145.46	287.1	118.9	170.2589693	152.4438821	326.7758854	276.8534884	M5	0.328571429	0.328571429	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.149	419	98	19	0.193877551	19qC3	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.631775105	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	9	7	7	VVNHFFVTF	VVNHFFCDI	SMM	104.018	301.377	2.897	281	0.171	110.553	279.147	2.525	290.84	180.67	126.9	112.4	301.3769268	104.0183595	267.4545558	108.7051201	M5	0.742857143	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1708	281	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.724209315	sgMsh2	cell line
chr19	18854204	18854204	TA	T	ENSMUST00000040489.8	1	ENSMUSG00000024727	FS	K/X	1478	Trpm6	ENSMUST00000040489.8:c.4439del	ENSMUSP00000037443.7:p.Lys1480SerfsTer79	H-2-Kb	9	8	6	FSFKKSGKL	FSFKKKWKT	NetMHCpan	109.2	5384.2	49.306	162	0.204	190.937	4032.024	21.117	9553.84	214.17	5384.2	109.2	2679.847002	205.1681772	1619.011748	176.7054726	M5	-0.9	-0.6	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2037	162	0	0	NA	19qB	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.86370865	sgMsh2	cell line
chr19	13586087	13586087	C	A	ENSMUST00000216014.2	2	ENSMUSG00000096289	missense	P/H	261	Olfr1484	ENSMUST00000216014.2:c.782C>A	ENSMUSP00000150019.2:p.Pro261His	H-2-Kb	9	4	8	IIFMYLQHS	IIFMYLQPS	SMM	112.748	84.161	0.746	577	0.175	190.322	166.471	0.875	218.06	226.74	229.3	233.4	84.16082809	112.7482994	114.8814742	153.9040328	M5	-0.042857143	1.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.178	577	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.754738045	sgMsh2	cell line
chr2	31207697	31207697	A	G	ENSMUST00000056433.6	1	ENSMUSG00000000194	missense	K/R	441	Gpr107	ENSMUST00000056433.6:c.1322A>G	ENSMUSP00000056739.5:p.Lys441Arg	H-2-Kb	9	7	5	INLARLRLF	INLAKLRLF	SMM	221.366	331.215	1.496	163	0.307	236.336	355.812	1.506	295.92	230.43	501.3	275	331.2150024	221.3655323	380.4083139	242.2423104	M5	1	1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.303	163	98	35	0.357142857	2qB	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr19	13705333	13705333	A	G	ENSMUST00000216366.1	5	ENSMUSG00000051156	missense	T/A	169	Olfr1491	ENSMUST00000216366.1:c.505A>G	ENSMUSP00000149071.1:p.Thr169Ala	H-2-Kb	9	6	6	TALIFALPF	TALIFTLPF	NetMHC	239.87	221.04	0.921	339	0.159	260.671	213.815	0.82	221.04	239.87	225.8	251.5	206.5903351	269.8422814	205.7074402	286.5827198	M5	2.557142857	2.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.153	339	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.64873551	sgMsh2	cell line
chr19	16383254	16383254	G	A	ENSMUST00000025541.5	1	ENSMUSG00000024639	missense	V/M	314	Gnaq	ENSMUST00000025541.5:c.940G>A	ENSMUSP00000025541.5:p.Val314Met	H-2-Kb	9	5	7	FILKMFMDL	FILKMFVDL	NetMHC	268.8	623.27	2.319	202	0.302	358.268	502.216	1.402	623.27	268.8	645.4	411.6	381.1623536	362.3347605	317.8703353	354.201177	M5	0.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.308	202	318	109	0.342767296	19qA	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	2	1	sgMsh2	cell line
chr19	54046882	54046882	C	A	ENSMUST00000036700.6	NA	ENSMUSG00000033717	missense	P/H	223	Adra2a	ENSMUST00000036700.6:c.668C>A	ENSMUSP00000036203.5:p.Pro223His	H-2-Kb	9	7	5	SFFAHCLIM	SFFAPCLIM	SMM	248.376	801.881	3.228	73	0.137	292.476	1028.88	3.518	884.89	340.13	1386.2	303.6	801.8811416	248.3762124	1172.87033	281.3519957	M5	2.014285714	2.142857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.131	73	7	1	0.142857143	19qD2	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.55545328	sgMsh2	cell line
chr19	13814832	13814832	C	CA	ENSMUST00000216659.1	5	ENSMUSG00000045395	FS	-/X	252-253	Olfr1499	ENSMUST00000216659.1:c.756dup	ENSMUSP00000150330.1:p.Gly253TrpfsTer20	H-2-Kb	9	8	5	ALFFWDPHL	NA	NetMHCpan	244.5	NA	NA	176	0.182	402.29	NA	NA	NA	436.24	NA	244.5	NA	462.4981501	NA	368.3409467	M5	0.028571429	0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1818	176	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.77085043	sgMsh2	cell line
chr19	44973627	44973627	T	C	ENSMUST00000096053.4	1	ENSMUSG00000036097	missense	I/T	1081	Slf2	ENSMUST00000096053.4:c.3242T>C	ENSMUSP00000093758.3:p.Ile1081Thr	H-2-Kb	9	8	4	LTYTLLHLV	LTYILLHLV	NetMHCpan	420.8	764.9	1.818	419	0.146	426.798	410.951	0.963	451.86	440.77	764.9	420.8	360.6699835	420.8332054	370.0411313	432.7628777	M5	1.485714286	1.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.149	419	98	19	0.193877551	19qC3	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.631775105	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	9	17	0	HYWLFLALV	NA	SMM	304.166	NA	NA	281	0.171	437.286	NA	NA	NA	459.38	NA	1465.1	NA	304.1655332	NA	415.1929781	M5	2.757142857	2.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1708	281	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.724209315	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	9	14	0	TFPHYWLFL	NA	NetMHCpan	353	NA	NA	281	0.171	400.076	NA	NA	NA	462.8	NA	353	NA	426.6875784	NA	373.4650797	M5	0.485714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1708	281	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.724209315	sgMsh2	cell line
chr19	36089200	36089200	A	C	ENSMUST00000025714.8	1	ENSMUSG00000024800	missense	K/T	111	Rpp30	ENSMUST00000025714.8:c.332A>C	ENSMUSP00000025714.7:p.Lys111Thr	H-2-Kb	9	4	8	AVFPKTETL	AVFPKTEKL	NetMHCpan	271.7	319.8	1.177	270	0.122	491.68	554.98	1.129	1063.81	799.24	319.8	271.7	621.0263106	489.9028884	488.9337312	493.4577793	M5	-0.542857143	-0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.14	270	94	11	0.117021277	19qC2	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.593614193	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	9	16	0	PHYWLFLAL	NA	SMM	166.001	NA	NA	281	0.171	366.318	NA	NA	NA	971.99	NA	541.1	NA	166.0007308	NA	191.5358177	M5	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1708	281	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.724209315	sgMsh2	cell line
chr2	87457903	87457903	C	T	ENSMUST00000213366.2	3	ENSMUSG00000058194	missense	T/I	246	Olfr1126	ENSMUST00000213366.2:c.737C>T	ENSMUSP00000150504.1:p.Thr246Ile	H-2-Db	9	9	3	FSICSSHLL	FSTCSSHLL	NetMHCpan	122.1	1810.1	14.825	431	0.193	310.97	2403.511	7.729	2360.1	147.02	1810.1	122.1	2446.921292	474.9194979	3225.299134	620.2546088	M5	1.4	1.4	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.193	431	0	0	NA	2qD	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.818339565	sgMsh2	cell line
chr2	88006632	88006632	T	G	ENSMUST00000099839.3	NA	ENSMUSG00000075141	missense	M/L	49	Olfr1160	ENSMUST00000099839.3:c.145A>C	ENSMUSP00000097427.3:p.Met49Leu	H-2-Db	9	3	9	FSIYSITLL	FSIYSITLM	NetMHC	196.44	127.02	0.647	369	0.168	334.623	267.366	0.799	127.02	196.44	241.9	253.7	292.8329887	415.5468552	336.9535219	439.1066356	M5	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.18	369	0	0	NA	2qD	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.763218248	sgMsh2	cell line
chr2	88006632	88006632	T	G	ENSMUST00000099839.3	NA	ENSMUSG00000075141	missense	M/L	49	Olfr1160	ENSMUST00000099839.3:c.145A>C	ENSMUSP00000097427.3:p.Met49Leu	H-2-Db	9	6	6	YSITLLGNI	YSITLMGNI	NetMHC	256.69	185.65	0.723	369	0.168	487.354	413.213	0.848	185.65	256.69	1299.1	1238	453.5445995	515.9647117	372.8807814	458.7435806	M5	1.714285714	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.18	369	0	0	NA	2qD	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.763218248	sgMsh2	cell line
chr2	88006632	88006632	T	G	ENSMUST00000099839.3	NA	ENSMUSG00000075141	missense	M/L	49	Olfr1160	ENSMUST00000099839.3:c.145A>C	ENSMUSP00000097427.3:p.Met49Leu	H-2-Kb	8	4	8	SIYSITLL	SIYSITLM	NetMHC	23.89	82.42	3.45	369	0.168	68.167	260.849	3.827	82.42	23.89	64.5	24.2	480.5515695	119.8781411	439.2785529	112.1346934	M5	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.18	369	0	0	NA	2qD	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.763218248	sgMsh2	cell line
chr2	88728850	88728850	C	CA	ENSMUST00000213118.1	5	ENSMUSG00000075119	FS	-/X	249-250	Olfr1197	ENSMUST00000213118.1:c.747dup	ENSMUSP00000150290.1:p.Gly250TrpfsTer14	H-2-Kb	8	7	6	VVLFFWAL	VVLFFGPC	SMM	13.205	97.441	7.379	372	0.212	22.017	195.967	8.901	359.72	30.82	282.1	27.9	97.44061133	13.20504848	109.8348092	16.13392375	M5	2.614285714	2.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.218	372	0	0	NA	2qE1	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.9243421	sgMsh2	cell line
chr2	85786374	85786374	T	C	ENSMUST00000215945.1	5	ENSMUSG00000033850	missense	F/L	288	Olfr1015	ENSMUST00000215945.1:c.862T>C	ENSMUSP00000148957.1:p.Phe288Leu	H-2-Kb	8	4	8	INPLLNPL	INPLLNPF	NetMHC	54.38	1179.23	21.685	229	0.188	137.353	1709.61	12.447	1179.23	54.38	1406.7	150.9	2012.51905	123.8055176	2012.51905	160.228586	M5	0.171428571	0.271428571	FALSE	FALSE	FALSE	0	FALSE	2	Mutect2;Strelka2;MuSe;Vardict	4	0.177	229	0	0	NA	2qD	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.750497943	sgMsh2	cell line
chr2	69397705	69397705	GA	G	ENSMUST00000063690.3	1	ENSMUSG00000027068	FS	E/X	221	Dhrs9	ENSMUST00000063690.3:c.669del	ENSMUSP00000069631.3:p.Lys223AsnfsTer28	H-2-Kb	8	12	2	KNWPFGNI	NA	NetMHCpan	40.3	NA	NA	152	0.224	93.17	NA	NA	NA	62.82	NA	40.3	NA	125.8171954	NA	123.5207728	M5	-0.371428571	-0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2237	152	18	2	0.111111111	2qC2	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	0.948510678	sgMsh2	cell line
chr2	40928017	40928017	CA	C	ENSMUST00000052550.12	1	ENSMUSG00000049252	FS	I/X	2400	Lrp1b	ENSMUST00000052550.12:c.7200del	ENSMUSP00000054275.7:p.Ile2400MetfsTer55	H-2-Kb	8	20	0	LVWQFMTV	NA	NetMHC	66.45	NA	NA	65	0.277	106.185	NA	NA	NA	66.45	NA	108.2	NA	133.2723329	NA	104.169361	M5	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.274	65	0	0	NA	2qB	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr2	35715376	35715376	T	A	ENSMUST00000091010.11	1	ENSMUSG00000026883	missense	L/H	523	Dab2ip	ENSMUST00000091010.11:c.1568T>A	ENSMUSP00000088532.5:p.Leu523His	H-2-Kb	8	7	5	ASLFHRFL	ASLFLRFL	SMM	67.412	149.534	2.218	73	0.301	79.724	161.206	2.022	287.23	94.04	128.6	73.4	149.534017	67.41243274	172.8781076	86.04784535	M5	0.671428571	0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.306	73	62	11	0.177419355	2qB	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr2	86423160	86423160	T	A	ENSMUST00000217481.1	5	ENSMUSG00000090059	missense	N/I	172	Olfr1062	ENSMUST00000217481.1:c.515A>T	ENSMUSP00000149742.1:p.Asn172Ile	H-2-Kb	8	5	7	VSYCSSIV	VSYCSSNV	NetMHC	116.26	13.15	0.113	373	0.201	156.842	27.874	0.178	13.15	116.26	30	138.4	25.74779247	175.2830817	38.70258739	288.8949831	M5	1.071428571	1.071428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.201	373	0	0	NA	2qD	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.852260377	sgMsh2	cell line
chr2	87002837	87002837	T	G	ENSMUST00000214002.1	5	ENSMUSG00000049843	missense	F/L	289	Olfr1102	ENSMUST00000214002.1:c.867T>G	ENSMUSP00000149634.1:p.Phe289Leu	H-2-Kb	8	8	4	VSTLYTIV	VSTFYTIV	NetMHC	116.69	148.52	1.273	248	0.19	152.172	177.23	1.165	148.52	116.69	49	120.8	205.9396641	183.5439188	295.6242117	245.8895091	M5	1.285714286	1.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.191	248	0	0	NA	2qD	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.809859363	sgMsh2	cell line
chr2	59815484	59815484	A	G	ENSMUST00000037526.10	5	ENSMUSG00000035168	missense	N/S	967	Tanc1	ENSMUST00000037526.10:c.2900A>G	ENSMUSP00000036003.4:p.Asn967Ser	H-2-Kb	8	11	1	SALCYAAA	NALCYAAA	NetMHC	120.24	4005.34	33.311	142	0.324	233.819	2621.952	11.214	4005.34	120.24	3796	459.3	1447.904774	227.8977303	1360.629867	239.7397234	M5	1.742857143	1.742857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.326	142	78	18	0.230769231	2qC1.1	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr2	88093684	88093684	C	T	ENSMUST00000099834.4	NA	ENSMUSG00000075136	missense	C/Y	84	Olfr1164	ENSMUST00000099834.4:c.251G>A	ENSMUSP00000097422.2:p.Cys84Tyr	H-2-Kb	8	8	4	VDFYYTSV	VDFCYTSV	SMMPMBEC	79.752	92.841	1.164	176	0.227	86.567	126.971	1.467	332.01	162.85	161.1	91.9	85.25895396	81.23440428	92.84104069	79.75170931	M5	-0.085714286	-0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	176	0	0	NA	2qD	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.962503012	sgMsh2	cell line
chr2	76633559	76633559	C	G	ENSMUST00000002808.6	1	ENSMUSG00000002731	missense	G/A	253	Prkra	ENSMUST00000002808.6:c.758G>C	ENSMUSP00000002808.6:p.Gly253Ala	H-2-Kb	8	10	2	QAFNITYL	QGFNITYL	NetMHC	165.08	354.06	2.145	115	0.27	336.593	461.286	1.37	354.06	165.08	338	183.7	568.5124764	489.4856902	598.0534499	544.1767718	M5	1.057142857	1.057142857	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.27	115	111	25	0.225225225	2qC3	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr2	35661625	35661625	G	A	ENSMUST00000091010.11	1	ENSMUSG00000026883	missense	R/K	121	Dab2ip	ENSMUST00000091010.11:c.362G>A	ENSMUSP00000088532.5:p.Arg121Lys	H-2-Kb	8	11	1	KSHLMPRL	RSHLMPRL	SMMPMBEC	216.641	219.149	1.012	14	0.429	255.129	246.003	0.964	251.16	273.15	295	268.3	240.8463117	241.9580078	219.1492557	216.6406749	M5	-0.085714286	-0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.356	14	15	5	0.333333333	2qB	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	2	1	sgMsh2	cell line
chr2	37405335	37405335	A	C	ENSMUST00000100143.9	5	ENSMUSG00000075376	missense	V/G	223	Rc3h2	ENSMUST00000100143.9:c.668T>G	ENSMUSP00000097721.3:p.Val223Gly	H-2-Kb	8	8	4	VLFGVQRL	VLFVVQRL	NetMHCpan	165.8	52.4	0.316	139	0.223	207.26	71.12	0.343	63.22	364.58	52.4	165.8	79.02054124	199.8664966	79.93555598	214.6545013	M5	0.885714286	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.219	139	65	17	0.261538462	2qB	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	0.928582201	sgMsh2	cell line
chr2	87457903	87457903	C	T	ENSMUST00000213366.2	3	ENSMUSG00000058194	missense	T/I	246	Olfr1126	ENSMUST00000213366.2:c.737C>T	ENSMUSP00000150504.1:p.Thr246Ile	H-2-Kb	8	9	3	FSICSSHL	FSTCSSHL	SMM	313.141	992.522	3.17	431	0.193	383.816	2090.074	5.446	3147.7	400.57	2856.6	454.8	992.5216755	313.1410475	1323.548926	367.0624846	M5	0.742857143	0.742857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.193	431	0	0	NA	2qD	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.818339565	sgMsh2	cell line
chr2	86217093	86217093	A	G	ENSMUST00000213987.2	5	ENSMUSG00000075197	missense	S/P	206	Olfr1046	ENSMUST00000213987.2:c.616T>C	ENSMUSP00000148873.1:p.Ser206Pro	H-2-Kb	8	8	4	LIFPGCNL	LIFSGCNL	NetMHCpan	204.5	147.7	0.722	167	0.198	257.593	158.907	0.617	227.03	423.9	147.7	204.5	170.1139779	265.3016799	133.88749	249.8848923	M5	1.157142857	1.157142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.186	167	0	0	NA	2qD	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.788658856	sgMsh2	cell line
chr2	86553750	86553750	C	A	ENSMUST00000213185.1	2	ENSMUSG00000110912	missense	A/S	125	Olfr1080	ENSMUST00000213185.1:c.373G>T	ENSMUSP00000150502.1:p.Ala125Ser	H-2-Kb	8	10	2	VSICKPLL	VAICKPLL	NetMHCpan	231.5	462.1	1.996	418	0.194	478.015	1095.373	2.292	826.98	424.24	462.1	231.5	1363.766443	531.7897962	1544.329616	584.4400914	M5	1.185714286	1.242857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.189	418	0	0	NA	2qD	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.80137916	sgMsh2	cell line
chr2	86217093	86217093	A	G	ENSMUST00000213987.2	5	ENSMUSG00000075197	missense	S/P	206	Olfr1046	ENSMUST00000213987.2:c.616T>C	ENSMUSP00000148873.1:p.Ser206Pro	H-2-Kb	8	6	6	IILIFPGC	IILIFSGC	SMM	156.581	109.079	0.697	167	0.198	323.297	152.907	0.473	174.37	448.56	693	1041.5	109.0787117	156.5813381	131.4437679	198.0341096	M5	2.3	2.585714286	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.186	167	0	0	NA	2qD	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.788658856	sgMsh2	cell line
chr2	85951347	85951347	A	G	ENSMUST00000080698.2	NA	ENSMUSG00000057207	missense	I/V	95	Olfr1028	ENSMUST00000080698.2:c.283A>G	ENSMUSP00000079522.1:p.Ile95Val	H-2-Kb	8	8	4	ISFVGCFI	ISFIGCFI	NetMHCpan	112.1	114.8	1.024	81	0.185	226.957	256.136	1.129	668.24	498.09	114.8	112.1	289.5609548	266.5262568	222.7101447	187.3872337	M5	2.228571429	2.228571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.193	81	0	0	NA	2qD	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.818339565	sgMsh2	cell line
chr2	94377654	94377654	A	C	ENSMUST00000111238.7	5	ENSMUSG00000027194	missense	L/V	204	Ttc17	ENSMUST00000111238.7:c.610T>G	ENSMUSP00000106869.1:p.Leu204Val	H-2-Kb	8	4	8	FTYLSKRV	FTYLSKRL	SMM	340.204	95.223	0.28	113	0.239	459.323	103.549	0.225	112.95	549.89	105.3	785.9	95.22259222	340.2044578	101.7981768	368.7567681	M5	-0.457142857	-0.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.24	113	45	11	0.244444444	2qE1	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr2	88728850	88728850	C	CA	ENSMUST00000213118.1	5	ENSMUSG00000075119	FS	-/X	249-250	Olfr1197	ENSMUST00000213118.1:c.747dup	ENSMUSP00000150290.1:p.Gly250TrpfsTer14	H-2-Kb	8	9	4	LFFWALYL	NA	SMM	208.805	NA	NA	372	0.212	427.243	NA	NA	NA	599.39	NA	597.6	NA	208.8045702	NA	256.8857419	M5	1.828571429	1.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.218	372	0	0	NA	2qE1	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.9243421	sgMsh2	cell line
chr2	87418268	87418268	AT	A	ENSMUST00000054974.1	NA	ENSMUSG00000043274	FS	Y/X	73	Olfr1123	ENSMUST00000054974.1:c.225del	ENSMUSP00000058786.1:p.Ser77AlafsTer11	H-2-Kb	8	11	5	YFFLATFL	YFFLSNFS	SMM	163.584	3004.277	18.365	208	0.188	388.902	8546.417	21.976	15586.04	709.46	11112.3	569	3004.277187	163.5836898	5980.534499	208.8045702	M5	2.442857143	2.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.196	208	0	0	NA	2qD	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.83105987	sgMsh2	cell line
chr2	85951575	85951575	T	C	ENSMUST00000080698.2	NA	ENSMUSG00000057207	missense	S/P	171	Olfr1028	ENSMUST00000080698.2:c.511T>C	ENSMUSP00000079522.1:p.Ser171Pro	H-2-Kb	8	6	6	MTFCKPNV	MTFCKSNV	NetMHCpan	389.7	283.5	0.727	216	0.213	482.997	327.825	0.679	552.24	987.77	283.5	389.7	306.71852	440.2911945	348.9313575	525.7024488	M5	-0.028571429	-0.028571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.216	216	0	0	NA	2qD	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.915861897	sgMsh2	cell line
chr2	86553750	86553750	C	A	ENSMUST00000213185.1	2	ENSMUSG00000110912	missense	A/S	125	Olfr1080	ENSMUST00000213185.1:c.373G>T	ENSMUSP00000150502.1:p.Ala125Ser	H-2-Kb	9	4	8	MSYDRYVSI	MSYDRYVAI	NetMHCpan	8.9	9.3	1.045	418	0.194	21.999	21.056	0.957	15.55	17.13	9.3	8.9	32.36756285	33.50502914	26.56134116	26.86890699	M5	-0.385714286	-0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.189	418	0	0	NA	2qD	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.80137916	sgMsh2	cell line
chr2	35715376	35715376	T	A	ENSMUST00000091010.11	1	ENSMUSG00000026883	missense	L/H	523	Dab2ip	ENSMUST00000091010.11:c.1568T>A	ENSMUSP00000088532.5:p.Leu523His	H-2-Kb	9	6	6	SASLFHRFL	SASLFLRFL	NetMHC	50.51	111.37	2.205	73	0.301	320.723	313.509	0.978	111.37	50.51	130.3	85.4	496.7181164	556.045077	701.8592048	674.916429	M5	0.671428571	0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.306	73	62	11	0.177419355	2qB	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr2	88728850	88728850	C	CA	ENSMUST00000213118.1	5	ENSMUSG00000075119	FS	-/X	249-250	Olfr1197	ENSMUST00000213118.1:c.747dup	ENSMUSP00000150290.1:p.Gly250TrpfsTer14	H-2-Kb	9	6	7	VVVLFFWAL	VVVLFFGPC	SMM	49.901	198.66	3.981	372	0.212	61.706	177.713	2.88	109.04	67.79	393.4	137.7	198.6598028	49.90108631	156.7653224	55.62243536	M5	2.614285714	3.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.218	372	0	0	NA	2qE1	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.9243421	sgMsh2	cell line
chr2	111335694	111335694	C	A	ENSMUST00000099618.1	NA	ENSMUSG00000096554	missense	R/M	128	Olfr1282	ENSMUST00000099618.1:c.383G>T	ENSMUSP00000097213.1:p.Arg128Met	H-2-Kb	9	10	2	CMPLHYSSI	CRPLHYSSI	NetMHC	94.4	1410.95	14.947	560	0.271	136.949	1266.807	9.25	1410.95	94.4	2800.2	169.4	724.6194716	104.4984864	1122.664526	174.2809827	M5	0.085714286	0.185714286	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.277	560	0	0	NA	2qE3	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr2	68118819	68118819	A	G	ENSMUST00000112346.2	NA	ENSMUSG00000034780	missense	S/G	293	B3galt1	ENSMUST00000112346.2:c.877A>G	ENSMUSP00000107965.2:p.Ser293Gly	H-2-Kb	9	10	2	YGLCRYRRV	YSLCRYRRV	NetMHC	124.84	39.29	0.315	232	0.246	342.339	134.347	0.392	39.29	124.84	116.2	280.8	165.6189397	475.4556362	152.4930322	403.8778168	M5	-0.614285714	-0.614285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.26	232	0	0	NA	2qC1.3	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr2	87418268	87418268	AT	A	ENSMUST00000054974.1	NA	ENSMUSG00000043274	FS	Y/X	73	Olfr1123	ENSMUST00000054974.1:c.225del	ENSMUSP00000058786.1:p.Ser77AlafsTer11	H-2-Kb	9	9	7	PMYFFLATF	PMYFFLSNF	SMM	28.848	25.889	0.897	208	0.188	98.916	75.468	0.763	107.26	153.65	210.7	394.8	25.88868552	28.84762076	43.67671833	44.18247089	M5	1.714285714	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.196	208	0	0	NA	2qD	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.83105987	sgMsh2	cell line
chr2	85777152	85777152	C	CA	ENSMUST00000213453.2	3	ENSMUSG00000059379	FS	-/X	189-190	Olfr1014	ENSMUST00000213453.2:c.572dup	ENSMUSP00000150352.1:p.Lys192GlufsTer78	H-2-Kb	9	72	0	VLWLHSLHL	NA	NetMHCpan	66.6	NA	NA	312	0.212	178.01	NA	NA	NA	157.36	NA	66.6	NA	198.6598028	NA	213.4273146	M5	0.471428571	1.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.216	312	0	0	NA	2qD	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.915861897	sgMsh2	cell line
chr2	87418268	87418268	AT	A	ENSMUST00000054974.1	NA	ENSMUSG00000043274	FS	Y/X	73	Olfr1123	ENSMUST00000054974.1:c.225del	ENSMUSP00000058786.1:p.Ser77AlafsTer11	H-2-Kb	9	15	1	ATFLLWRYV	NA	NetMHC	157.8	NA	NA	208	0.188	303.496	NA	NA	NA	157.8	NA	209.7	NA	397.2921646	NA	406.6773641	M5	1.128571429	1.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.196	208	0	0	NA	2qD	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.83105987	sgMsh2	cell line
chr2	86423160	86423160	T	A	ENSMUST00000217481.1	5	ENSMUSG00000090059	missense	N/I	172	Olfr1062	ENSMUST00000217481.1:c.515A>T	ENSMUSP00000149742.1:p.Asn172Ile	H-2-Kb	9	3	9	FSVSYCSSI	FSVSYCSSN	NetMHC	168.7	11217.63	66.495	373	0.201	344.088	5986.187	17.397	11217.63	168.7	9824	192.6	2148.374555	495.5756965	1486.791262	526.3201534	M5	1.071428571	1.071428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.201	373	0	0	NA	2qD	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.852260377	sgMsh2	cell line
chr2	91284247	91284247	A	G	ENSMUST00000102594.10	1	ENSMUSG00000040591	missense	F/L	147	1110051M20Rik	ENSMUST00000102594.10:c.439T>C	ENSMUSP00000099654.4:p.Phe147Leu	H-2-Kb	9	8	4	QIQLYYSEF	QIQFYYSEF	SMM	177.873	191.034	1.074	178	0.225	233.567	248.13	1.062	224.46	181.21	352.1	442.3	191.0337056	177.8729877	271.8003427	285.9235978	M5	-0.542857143	-0.3	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.214	178	52	6	0.115384615	2qE1	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.907381694	sgMsh2	cell line
chr2	91284247	91284247	A	G	ENSMUST00000102594.10	1	ENSMUSG00000040591	missense	F/L	147	1110051M20Rik	ENSMUST00000102594.10:c.439T>C	ENSMUSP00000099654.4:p.Phe147Leu	H-2-Kb	9	9	3	IQLYYSEFL	IQFYYSEFL	NetMHCpan	192.4	29.6	0.154	178	0.225	382.31	125.453	0.328	51.33	204.72	29.6	192.4	199.5767748	559.8993973	219.4067579	608.4851727	M5	0.5	0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.214	178	52	6	0.115384615	2qE1	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.907381694	sgMsh2	cell line
chr2	85777152	85777152	C	CA	ENSMUST00000213453.2	3	ENSMUSG00000059379	FS	-/X	189-190	Olfr1014	ENSMUST00000213453.2:c.572dup	ENSMUSP00000150352.1:p.Lys192GlufsTer78	H-2-Kb	9	39	0	LSLHHCHYL	NA	NetMHCpan	145.4	NA	NA	312	0.212	249.438	NA	NA	NA	237.51	NA	145.4	NA	312.6871254	NA	261.3665468	M5	-0.114285714	-0.042857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.216	312	0	0	NA	2qD	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.915861897	sgMsh2	cell line
chr2	91284247	91284247	A	G	ENSMUST00000102594.10	1	ENSMUSG00000040591	missense	F/L	147	1110051M20Rik	ENSMUST00000102594.10:c.439T>C	ENSMUSP00000099654.4:p.Phe147Leu	H-2-Kb	9	3	9	FLFAFQIQL	FLFAFQIQF	NetMHCpan	235.9	1129.7	4.789	178	0.225	317.333	742.822	2.341	735.56	268.86	1129.7	235.9	750.0841699	444.7438999	632.7760017	365.8053055	M5	1.242857143	2.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.214	178	52	6	0.115384615	2qE1	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.907381694	sgMsh2	cell line
chr2	35715376	35715376	T	A	ENSMUST00000091010.11	1	ENSMUSG00000026883	missense	L/H	523	Dab2ip	ENSMUST00000091010.11:c.1568T>A	ENSMUSP00000088532.5:p.Leu523His	H-2-Kb	9	5	7	ISASLFHRF	ISASLFLRF	NetMHCpan	141.1	141.7	1.004	73	0.301	241.26	183.257	0.76	281.9	294.17	141.7	141.1	162.2220929	209.4642929	204.2913602	273.0549161	M5	0.385714286	1.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.306	73	62	11	0.177419355	2qB	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr2	88728850	88728850	C	CA	ENSMUST00000213118.1	5	ENSMUSG00000075119	FS	-/X	249-250	Olfr1197	ENSMUST00000213118.1:c.747dup	ENSMUSP00000150290.1:p.Gly250TrpfsTer14	H-2-Kb	9	8	5	VLFFWALYL	NA	NetMHCpan	159.2	NA	NA	372	0.212	200.074	NA	NA	NA	315.14	NA	159.2	NA	198.6598028	NA	201.4883776	M5	1.828571429	2.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.218	372	0	0	NA	2qE1	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.9243421	sgMsh2	cell line
chr2	111379635	111379635	T	C	ENSMUST00000062407.5	5	ENSMUSG00000108931	missense	F/L	212	Olfr1284	ENSMUST00000062407.5:c.634T>C	ENSMUSP00000052153.4:p.Phe212Leu	H-2-Kb	9	5	7	MTLGTFLLL	MTLGTFFLL	NetMHCpan	246.9	192.4	0.779	306	0.222	312.574	264.729	0.847	258.37	322.38	192.4	246.9	271.0878168	302.7680195	408.5545015	416.1500968	M5	2.414285714	2.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.218	306	0	0	NA	2qE3	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	0.9243421	sgMsh2	cell line
chr2	86423160	86423160	T	A	ENSMUST00000217481.1	5	ENSMUSG00000090059	missense	N/I	172	Olfr1062	ENSMUST00000217481.1:c.515A>T	ENSMUSP00000149742.1:p.Asn172Ile	H-2-Kb	9	5	7	VSYCSSIVI	VSYCSSNVI	SMM	223.929	194.585	0.869	373	0.201	269.289	272.085	1.01	472.86	367.58	305.8	288.4	194.5852873	223.9288243	238.3691237	250.1785091	M5	1.828571429	1.828571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.201	373	0	0	NA	2qD	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.852260377	sgMsh2	cell line
chr2	88728850	88728850	C	CA	ENSMUST00000213118.1	5	ENSMUSG00000075119	FS	-/X	249-250	Olfr1197	ENSMUST00000213118.1:c.747dup	ENSMUSP00000150290.1:p.Gly250TrpfsTer14	H-2-Kb	9	7	6	VVLFFWALY	VVLFFGPCI	SMM	53.47	466.778	8.73	372	0.212	218.622	436.26	1.996	939.54	368.97	287.4	2497.6	466.7775928	53.46997733	405.7420321	68.27315929	M5	1.828571429	2.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.218	372	0	0	NA	2qE1	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.9243421	sgMsh2	cell line
chr2	58287755	58287755	C	T	ENSMUST00000028178.13	1	ENSMUSG00000026834	missense	R/H	234	Acvr1c	ENSMUST00000028178.13:c.701G>A	ENSMUSP00000028178.7:p.Arg234His	H-2-Kb	9	7	5	RSWFHEAEI	RSWFREAEI	NetMHCpan	299.2	426.6	1.426	154	0.234	422.907	435.985	1.031	445.37	406.02	426.6	299.2	502.4698412	520.1277201	400.1750427	439.7947088	M5	-0.285714286	-0.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.236	154	0	0	NA	2qC1.1	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr2	88093684	88093684	C	T	ENSMUST00000099834.4	NA	ENSMUSG00000075136	missense	C/Y	84	Olfr1164	ENSMUST00000099834.4:c.251G>A	ENSMUSP00000097422.2:p.Cys84Tyr	H-2-Kb	9	7	5	FVDFYYTSV	FVDFCYTSV	SMMPMBEC	337.482	1087.051	3.221	176	0.227	417.989	1398.541	3.346	1529.11	457.44	4358.1	764.7	1267.972983	378.5384504	1087.051201	337.4815227	M5	-0.085714286	0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	176	0	0	NA	2qD	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.962503012	sgMsh2	cell line
chr2	85786374	85786374	T	C	ENSMUST00000215945.1	5	ENSMUSG00000033850	missense	F/L	288	Olfr1015	ENSMUST00000215945.1:c.862T>C	ENSMUSP00000148957.1:p.Phe288Leu	H-2-Kb	9	3	9	IINPLLNPL	IINPLLNPF	NetMHCpan	438.7	1653.4	3.769	229	0.188	476.268	1172.73	2.462	1420.23	481.44	1653.4	438.7	794.5294511	471.0966327	925.2306262	534.872168	M5	0.171428571	1.142857143	FALSE	FALSE	FALSE	0	FALSE	2	Mutect2;Strelka2;MuSe;Vardict	4	0.177	229	0	0	NA	2qD	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.750497943	sgMsh2	cell line
chr2	87656102	87656102	A	AT	ENSMUST00000135875.3	5	ENSMUSG00000111747	FS	M/NX	273	Olfr1134	ENSMUST00000135875.3:c.817dup	ENSMUSP00000150837.1:p.Met273AsnfsTer23	H-2-Kb	9	20	0	DSYVKPTYL	NA	SMM	254.748	NA	NA	307	0.169	435.96	NA	NA	NA	486.22	NA	545.4	NA	254.7475407	NA	385.7003207	M5	-0.114285714	-0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.175	307	0	0	NA	2qD	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.742017741	sgMsh2	cell line
chr2	88728850	88728850	C	CA	ENSMUST00000213118.1	5	ENSMUSG00000075119	FS	-/X	249-250	Olfr1197	ENSMUST00000213118.1:c.747dup	ENSMUSP00000150290.1:p.Gly250TrpfsTer14	H-2-Kb	9	10	3	FFWALYLYL	NA	SMM	227.567	NA	NA	372	0.212	401.182	NA	NA	NA	569.42	NA	1860.7	NA	227.567375	NA	232.9431801	M5	1.385714286	1.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.218	372	0	0	NA	2qE1	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.9243421	sgMsh2	cell line
chr2	110794971	110794971	T	C	ENSMUST00000099623.9	5	ENSMUSG00000074968	missense	D/G	178	Ano3	ENSMUST00000099623.9:c.533A>G	ENSMUSP00000097219.3:p.Asp178Gly	H-2-Kb	9	8	4	IQYGKRNTF	IQYDKRNTF	SMM	282.56	301.377	1.067	161	0.242	497.094	448.238	0.902	1030.55	873.76	569.7	681.4	301.3769268	282.5595563	326.7758854	312.7879401	M5	-1.642857143	-1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.265	161	0	0	NA	2qE3	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr2	88093684	88093684	C	T	ENSMUST00000099834.4	NA	ENSMUSG00000075136	missense	C/Y	84	Olfr1164	ENSMUST00000099834.4:c.251G>A	ENSMUSP00000097422.2:p.Cys84Tyr	H-2-Kb	9	8	4	VDFYYTSVI	VDFCYTSVI	SMMPMBEC	259.567	326.024	1.256	176	0.227	355.835	517.65	1.455	1441.74	1032.28	592.6	391.7	442.7004873	319.9705442	326.0243217	259.5673122	M5	1.057142857	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	176	0	0	NA	2qD	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.962503012	sgMsh2	cell line
chr2	158768178	158768178	C	T	ENSMUST00000029183.2	1	ENSMUSG00000027654	missense	P/L	22	Fam83d	ENSMUST00000029183.2:c.65C>T	ENSMUSP00000029183.2:p.Pro22Leu	H-2-Db	9	8	4	CGPLNPTEL	CGPPNPTEL	NetMHC	65.56	425.32	6.487	34	0.235	216.905	644.766	2.973	425.32	65.56	306.4	93.7	864.2114181	340.1104688	1154.968129	410.7428385	M5	-0.471428571	-0.214285714	TRUE	FALSE	FALSE	1	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.235	34	13	4	0.307692308	2qH1	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	0.996423823	sgMsh2	cell line
chr2	157120489	157120489	CT	C	ENSMUST00000057725.9	1	ENSMUSG00000027639	FS	K/X	262	Samhd1	ENSMUST00000057725.9:c.785del	ENSMUSP00000059717.3:p.Lys262SerfsTer25	H-2-Db	9	11	1	SGSTNRAPL	NA	SMMPMBEC	152.957	NA	NA	120	0.2	184.814	NA	NA	NA	213.09	NA	238.9	NA	156.538079	NA	152.9572264	M5	-0.785714286	-0.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.221	120	76	0	0	2qH1	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	0.937062404	sgMsh2	cell line
chr2	180583499	180583499	A	G	ENSMUST00000029085.8	1	ENSMUSG00000027569	missense	T/A	83	Mrgbp	ENSMUST00000029085.8:c.247A>G	ENSMUSP00000029085.8:p.Thr83Ala	H-2-Db	9	10	2	SAMYDMQAL	STMYDMQAL	NetMHCpan	338.9	3104.4	9.16	71	0.254	412.293	3121.081	7.57	4556.07	341.95	3104.4	338.9	3137.762006	482.636319	2975.568825	520.6789256	M5	0.157142857	0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.272	71	69	18	0.260869565	2qH4	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr2	121336461	121336461	T	G	ENSMUST00000052029.9	1	ENSMUSG00000033526	missense	S/R	870	Ppip5k1	ENSMUST00000052029.9:c.2608A>C	ENSMUSP00000057632.3:p.Ser870Arg	H-2-Db	9	11	1	RAISELNYM	SAISELNYM	NetMHCpan	138.7	63.8	0.46	116	0.241	375.561	214.339	0.571	146.47	381.66	63.8	138.7	340.1104688	520.7388744	282.2084413	369.4621898	M5	0.157142857	0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.245	116	20	3	0.15	2qE5	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr2	167617965	167617965	G	A	ENSMUST00000125544.2	5	ENSMUSG00000089739	missense	P/L	236	Gm20431	ENSMUST00000125544.2:c.707C>T	ENSMUSP00000118416.2:p.Pro236Leu	H-2-Db	9	9	3	KVLRNFRLL	KVPRNFRLL	SMM	356.96	1160.433	3.251	153	0.268	462.19	1382.892	2.992	2391.93	1641.49	845.3	441.8	1160.432811	356.9603675	1605.350989	482.5807566	M5	0.242857143	0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.258	153	62	13	0.209677419	2qH3	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr2	131274254	131274254	T	C	ENSMUST00000183349.1	3	ENSMUSG00000037514	missense	I/T	24	Pank2	ENSMUST00000183349.1:c.70T>C	ENSMUSP00000139203.1:p.Ile24Thr	H-2-Kb	8	8	4	LSRTFSHL	LSRIFSHL	NetMHC	6.68	6.6	0.988	53	0.245	22.689	20.587	0.907	6.6	6.68	16.3	22.9	26.10597994	24.5323979	24.87367755	22.47708563	M5	-0.485714286	-0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.247	53	85	12	0.141176471	2qF1	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr2	153203878	153203878	G	T	ENSMUST00000089027.2	1	ENSMUSG00000068040	missense	V/L	557	Tm9sf4	ENSMUST00000089027.2:c.1669G>T	ENSMUSP00000086422.2:p.Val557Leu	H-2-Kb	8	8	4	IVMLYFQL	IVMVYFQL	NetMHC	8.02	7.34	0.915	68	0.25	10.703	11.07	1.034	7.34	8.02	9.5	9.5	20.88045702	18.78192059	12.63979412	11.90529058	M5	1.671428571	1.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.272	68	100	28	0.28	2qH1	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr2	180714861	180714861	A	G	ENSMUST00000078687.5	1	ENSMUSG00000027573	missense	N/S	97	Gid8	ENSMUST00000078687.5:c.290A>G	ENSMUSP00000077753.5:p.Asn97Ser	H-2-Kb	8	11	1	SRYLYFHL	NRYLYFHL	NetMHC	8.14	142.06	17.452	96	0.156	15.146	118.423	7.819	142.06	8.14	235.5	34.2	94.78508415	14.91900983	87.24489012	15.37234066	M5	0.014285714	0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.176	96	117	39	0.333333333	2qH4	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	0.746257842	sgMsh2	cell line
chr2	167617965	167617965	G	A	ENSMUST00000125544.2	5	ENSMUSG00000089739	missense	P/L	236	Gm20431	ENSMUST00000125544.2:c.707C>T	ENSMUSP00000118416.2:p.Pro236Leu	H-2-Kb	8	10	2	VLRNFRLL	VPRNFRLL	NetMHC	42.93	179.86	4.19	153	0.268	82.815	143.105	1.728	179.86	42.93	1509.6	100.7	75.1173053	77.57825382	106.3506136	88.05215715	M5	0.242857143	0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.258	153	62	13	0.209677419	2qH3	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr2	180583499	180583499	A	G	ENSMUST00000029085.8	1	ENSMUSG00000027569	missense	T/A	83	Mrgbp	ENSMUST00000029085.8:c.247A>G	ENSMUSP00000029085.8:p.Thr83Ala	H-2-Kb	8	11	1	AMYDMQAL	TMYDMQAL	NetMHCpan	73.9	56.7	0.767	71	0.254	127.758	106.842	0.836	70.22	74.49	56.7	73.9	143.4630303	181.0256018	185.6692572	236.4503711	M5	0.157142857	0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.272	71	69	18	0.260869565	2qH4	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr2	132240580	132240580	A	G	ENSMUST00000110164.7	2	ENSMUSG00000027341	missense	F/S	90	Tmem230	ENSMUST00000110164.7:c.269T>C	ENSMUSP00000105793.1:p.Phe90Ser	H-2-Kb	8	11	1	SLPGFYHL	FLPGFYHL	NetMHCpan	98.2	522.1	5.317	157	0.242	164.475	459.527	2.794	694.44	114.79	522.1	98.2	387.9180607	214.1608096	396.9538331	229.4774419	M5	0.557142857	0.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.252	157	40	4	0.1	2qF2	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr3	28794409	28794409	G	A	ENSMUST00000060500.8	1	ENSMUSG00000050192	missense	C/Y	139	Eif5a2	ENSMUST00000060500.8:c.416G>A	ENSMUSP00000050289.7:p.Cys139Tyr	H-2-Kb	8	7	5	VSVMYAMS	VSVMCAMS	SMM	72.734	814.217	11.194	213	0.23	100.979	2855.808	28.281	5114.17	120.91	4897.4	389.8	814.2166892	72.73442335	792.027024	81.04757034	M5	0.985714286	1.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.237	213	10	4	0.4	3qA3	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr2	152004194	152004194	T	C	ENSMUST00000073228.11	1	ENSMUSG00000027463	missense	V/A	25	Slc52a3	ENSMUST00000073228.11:c.74T>C	ENSMUSP00000072961.5:p.Val25Ala	H-2-Kb	8	6	6	INGLWAEL	INGLWVEL	SMMPMBEC	144.125	415.662	2.884	48	0.271	176.594	546.352	3.094	646.97	156.97	525.5	212.8	567.204934	196.218522	415.6616909	144.1252256	M5	0.157142857	0.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.276	48	0	0	NA	2qG3	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr2	157120489	157120489	CT	C	ENSMUST00000057725.9	1	ENSMUSG00000027639	FS	K/X	262	Samhd1	ENSMUST00000057725.9:c.785del	ENSMUSP00000059717.3:p.Lys262SerfsTer25	H-2-Kb	8	26	0	SILMNSNL	NA	SMMPMBEC	145.459	NA	NA	120	0.2	177.292	NA	NA	NA	197.28	NA	272.8	NA	157.3040847	NA	145.4587999	M5	0.885714286	0.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.221	120	76	0	0	2qH1	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	0.937062404	sgMsh2	cell line
chr3	30936831	30936831	A	AG	ENSMUST00000168645.7	1	ENSMUSG00000037652	FS	P/PX	400	Phc3	ENSMUST00000168645.7:c.1199dup	ENSMUSP00000130142.1:p.His401SerfsTer39	H-2-Kb	8	17	0	VSYYNYPS	NA	SMM	150.918	NA	NA	104	0.221	209.986	NA	NA	NA	209.72	NA	321.3	NA	150.9176382	NA	210.2519343	M5	-1.514285714	-0.8	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2212	104	23	0	0	3qA3	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.937910424	sgMsh2	cell line
chr2	119774213	119774213	C	A	ENSMUST00000110793.7	5	ENSMUSG00000034032	missense	G/W	405	Rpap1	ENSMUST00000110793.7:c.1213G>T	ENSMUSP00000106420.1:p.Gly405Trp	H-2-Kb	8	10	2	AWYSLQEL	AGYSLQEL	NetMHC	226.35	163.52	0.722	113	0.106	489.02	233.364	0.477	163.52	226.35	163.4	328.3	303.2075422	649.7405923	343.3523309	704.2713151	M5	-0.342857143	-0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.125	113	21	0	0	2qE5	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	0.530012672	sgMsh2	cell line
chr2	119139420	119139420	GT	G	ENSMUST00000094695.11	1	ENSMUSG00000070730	FS	T/X	387	Rmdn3	ENSMUST00000094695.11:c.1159del	ENSMUSP00000092283.5:p.Thr387ArgfsTer46	H-2-Kb	8	37	0	YSQDFQKL	NA	SMM	227.898	NA	NA	132	0.235	263.57	NA	NA	NA	233.55	NA	302.9	NA	227.8977303	NA	293.5891489	M5	-1.228571429	-1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2348	132	37	3	0.081081081	2qE5	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	0.995575803	sgMsh2	cell line
chr2	167617965	167617965	G	A	ENSMUST00000125544.2	5	ENSMUSG00000089739	missense	P/L	236	Gm20431	ENSMUST00000125544.2:c.707C>T	ENSMUSP00000118416.2:p.Pro236Leu	H-2-Kb	8	9	3	KVLRNFRL	KVPRNFRL	NetMHC	274.86	581.44	2.115	153	0.268	336.838	777.83	2.309	581.44	274.86	616.5	308.3	1073.346637	457.867692	939.1608928	365.3759857	M5	0.3	0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.258	153	62	13	0.209677419	2qH3	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr3	30936831	30936831	A	AG	ENSMUST00000168645.7	1	ENSMUSG00000037652	FS	P/PX	400	Phc3	ENSMUST00000168645.7:c.1199dup	ENSMUSP00000130142.1:p.His401SerfsTer39	H-2-Kb	8	18	0	SYYNYPST	NA	NetMHC	356.49	NA	NA	104	0.221	497.388	NA	NA	NA	356.49	NA	483.4	NA	629.1294278	NA	511.3755976	M5	-1.5	-1.5	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2212	104	23	0	0	3qA3	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.937910424	sgMsh2	cell line
chr2	122798101	122798101	G	A	ENSMUST00000110506.8	1	ENSMUSG00000005803	missense	V/M	175	Sqor	ENSMUST00000110506.8:c.523G>A	ENSMUSP00000106133.2:p.Val175Met	H-2-Kb	8	4	8	SNYSVKTM	SNYSVKTV	NetMHCpan	208.3	441.3	2.119	127	0.205	422.209	474.578	1.124	553.57	406.15	441.3	208.3	390.6069803	438.2682402	507.8553127	549.2119775	M5	-0.585714286	-0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.218	127	191	34	0.178010471	2qE5	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	0.9243421	sgMsh2	cell line
chr2	158495606	158495606	C	A	ENSMUST00000109485.8	1	ENSMUSG00000027652	missense	L/I	1496	Ralgapb	ENSMUST00000109485.8:c.4486C>A	ENSMUSP00000105111.2:p.Leu1496Ile	H-2-Kb	8	10	2	AIFQEVGL	ALFQEVGL	SMMPMBEC	137.006	468.533	3.42	127	0.252	277.086	992.844	3.583	2896.55	412.65	1197.3	363.3	788.3879904	190.8710225	468.5328006	137.0061303	M5	1.128571429	1.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.228	127	85	26	0.305882353	2qH1	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	0.966743114	sgMsh2	cell line
chr2	155716199	155716199	C	T	ENSMUST00000040833.4	1	ENSMUSG00000038312	missense	M/I	171	Edem2	ENSMUST00000040833.4:c.513G>A	ENSMUSP00000041202.4:p.Met171Ile	H-2-Kb	8	9	3	TGIPYGTV	TGMPYGTV	NetMHCpan	219.8	186.7	0.849	62	0.323	430.483	515.16	1.197	467.02	419.66	186.7	219.8	652.7396586	441.3061706	563.3003227	468.5328006	M5	0.614285714	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.321	62	125	38	0.304	2qH1	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr2	155716199	155716199	C	T	ENSMUST00000040833.4	1	ENSMUSG00000038312	missense	M/I	171	Edem2	ENSMUST00000040833.4:c.513G>A	ENSMUSP00000041202.4:p.Met171Ile	H-2-Kb	8	11	1	IPYGTVNL	MPYGTVNL	SMM	153.723	307.426	2	62	0.323	415.142	1423.261	3.428	2508.66	674.78	2785.9	1338	307.4255792	153.7234066	337.8625068	155.5034397	M5	0.071428571	0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.321	62	125	38	0.304	2qH1	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr2	112241488	112241488	T	C	ENSMUST00000028554.3	1	ENSMUSG00000027134	missense	V/A	51	Lpcat4	ENSMUST00000028554.3:c.152T>C	ENSMUSP00000028554.3:p.Val51Ala	H-2-Kb	8	11	1	ALLAFIVL	VLLAFIVL	SMMPMBEC	224.254	65.424	0.292	110	0.2	421.067	108.762	0.258	278.12	1447.57	152.1	610	61.62259741	232.1346655	65.42443789	224.2538976	M5	3.528571429	3.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.215	110	131	30	0.229007634	2qE3	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	0.911621796	sgMsh2	cell line
chr3	30936831	30936831	A	AG	ENSMUST00000168645.7	1	ENSMUSG00000037652	FS	P/PX	400	Phc3	ENSMUST00000168645.7:c.1199dup	ENSMUSP00000130142.1:p.His401SerfsTer39	H-2-Kb	9	17	0	VSYYNYPST	NA	NetMHC	21.81	NA	NA	104	0.221	51.725	NA	NA	NA	21.81	NA	74.8	NA	51.1811453	NA	52.2696991	M5	-1.5	-0.8	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2212	104	23	0	0	3qA3	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.937910424	sgMsh2	cell line
chr2	132240580	132240580	A	G	ENSMUST00000110164.7	2	ENSMUSG00000027341	missense	F/S	90	Tmem230	ENSMUST00000110164.7:c.269T>C	ENSMUSP00000105793.1:p.Phe90Ser	H-2-Kb	9	10	2	VSLPGFYHL	VFLPGFYHL	NetMHC	22.77	187.13	8.218	157	0.242	93.901	246.108	2.621	187.13	22.77	200.4	30	291.8166046	157.8010905	341.3893746	169.9221522	M5	0.557142857	0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.252	157	40	4	0.1	2qF2	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr2	180714861	180714861	A	G	ENSMUST00000078687.5	1	ENSMUSG00000027573	missense	N/S	97	Gid8	ENSMUST00000078687.5:c.290A>G	ENSMUSP00000077753.5:p.Asn97Ser	H-2-Kb	9	10	2	TSRYLYFHL	TNRYLYFHL	NetMHC	31.73	61.26	1.931	96	0.156	64.842	81.222	1.253	61.26	31.73	45.4	34.6	101.1835704	95.08455975	115.9444594	104.2917608	M5	0.014285714	0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.176	96	117	39	0.333333333	2qH4	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	0.746257842	sgMsh2	cell line
chr2	172454295	172454295	T	C	ENSMUST00000099060.1	1	ENSMUSG00000074569	missense	H/R	203	Gcnt7	ENSMUST00000099060.1:c.608A>G	ENSMUSP00000096659.1:p.His203Arg	H-2-Kb	9	8	4	FQWRYVMNL	FQWHYVMNL	NetMHC	44.73	91.86	2.054	134	0.254	378.766	352.119	0.93	91.86	44.73	121.8	74.8	680.9418088	764.0292757	582.4383998	682.7315929	M5	-0.042857143	-0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.256	134	0	0	NA	2qH3	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr2	167617965	167617965	G	A	ENSMUST00000125544.2	5	ENSMUSG00000089739	missense	P/L	236	Gm20431	ENSMUST00000125544.2:c.707C>T	ENSMUSP00000118416.2:p.Pro236Leu	H-2-Kb	9	9	3	KVLRNFRLL	KVPRNFRLL	NetMHC	66.24	83.46	1.26	153	0.268	343.432	560.289	1.631	83.46	66.24	216.7	159.5	903.878383	527.3634174	1291.962773	684.3054518	M5	0.242857143	0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.258	153	62	13	0.209677419	2qH3	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr2	153203878	153203878	G	T	ENSMUST00000089027.2	1	ENSMUSG00000068040	missense	V/L	557	Tm9sf4	ENSMUST00000089027.2:c.1669G>T	ENSMUSP00000086422.2:p.Val557Leu	H-2-Kb	9	7	5	SIVMLYFQL	SIVMVYFQL	NetMHC	70.15	150.66	2.148	68	0.25	130.943	265.72	2.029	150.66	70.15	264.6	126.6	338.1504736	162.2220929	266.8394274	135.2851103	M5	1.671428571	2.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.272	68	100	28	0.28	2qH1	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr2	180583499	180583499	A	G	ENSMUST00000029085.8	1	ENSMUSG00000027569	missense	T/A	83	Mrgbp	ENSMUST00000029085.8:c.247A>G	ENSMUSP00000029085.8:p.Thr83Ala	H-2-Kb	9	4	8	VIWDHLSAM	VIWDHLSTM	NetMHCpan	73.8	57.5	0.779	71	0.254	77.793	86.56	1.113	88.57	75.95	57.5	73.8	84.54929682	79.63610307	91.88613834	85.35913393	M5	-0.128571429	0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.272	71	69	18	0.260869565	2qH4	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr2	119139420	119139420	GT	G	ENSMUST00000094695.11	1	ENSMUSG00000070730	FS	T/X	387	Rmdn3	ENSMUST00000094695.11:c.1159del	ENSMUSP00000092283.5:p.Thr387ArgfsTer46	H-2-Kb	9	45	0	DGYIFLSAI	NA	NetMHC	187.49	NA	NA	132	0.235	309.473	NA	NA	NA	187.49	NA	212.4	NA	406.5462879	NA	510.7989549	M5	2.185714286	2.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2348	132	37	3	0.081081081	2qE5	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	0.995575803	sgMsh2	cell line
chr2	153203878	153203878	G	T	ENSMUST00000089027.2	1	ENSMUSG00000068040	missense	V/L	557	Tm9sf4	ENSMUST00000089027.2:c.1669G>T	ENSMUSP00000086422.2:p.Val557Leu	H-2-Kb	9	8	4	IVMLYFQLC	IVMVYFQLC	NetMHC	208.19	187.6	0.901	68	0.25	241.817	252.885	1.046	187.6	208.19	284.2	321.9	275.4926395	269.2216614	230.2767015	214.4124503	M5	1.428571429	1.771428571	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.272	68	100	28	0.28	2qH1	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr3	28895683	28895683	GA	G	ENSMUST00000099170.1	1	ENSMUSG00000074655	FS	K/X	31	Gm1527	ENSMUST00000099170.1:c.100del	ENSMUSP00000096773.1:p.Arg34AspfsTer16	H-2-Kb	9	19	0	LMMSWLCRV	NA	SMM	184.974	NA	NA	55	0.436	260.623	NA	NA	NA	265.24	NA	399.7	NA	184.9737069	NA	256.0059151	M5	0.885714286	1.742857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.447	55	0	0	NA	3qA3	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	2	1	sgMsh2	cell line
chr2	117177703	117177703	A	G	ENSMUST00000028829.12	1	ENSMUSG00000027351	missense	I/M	363	Spred1	ENSMUST00000028829.12:c.1089A>G	ENSMUSP00000028829.6:p.Ile363Met	H-2-Kb	9	10	2	CMYQVSCML	CIYQVSCML	SMM	228.618	511.811	2.239	146	0.26	331.205	563.356	1.701	483.81	295.31	614.9	367.1	511.811453	228.6177783	851.6281337	411.386466	M5	0.971428571	0.971428571	TRUE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.257	146	184	44	0.239130435	2qE5	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr2	119774213	119774213	C	A	ENSMUST00000110793.7	5	ENSMUSG00000034032	missense	G/W	405	Rpap1	ENSMUST00000110793.7:c.1213G>T	ENSMUSP00000106420.1:p.Gly405Trp	H-2-Kb	9	10	2	AWYSLQELF	AGYSLQELF	SMM	200.037	798.197	3.99	113	0.106	395.394	1041.581	2.634	1401.72	386.91	1071	1517.9	798.1968324	200.0368468	1012.161934	403.8778168	M5	0.185714286	0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.125	113	21	0	0	2qE5	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	0.530012672	sgMsh2	cell line
chr3	125713338	125713338	G	T	ENSMUST00000173932.7	5	ENSMUSG00000027971	missense	R/M	717	Ndst4	ENSMUST00000173932.7:c.2150G>T	ENSMUSP00000133341.2:p.Arg717Met	H-2-Db	9	9	3	ALMFNFYEV	ALRFNFYEV	NetMHC	197.64	8177.77	41.377	91	0.198	266.339	3452.617	12.963	8177.77	197.64	3672.5	234.4	2948.6281	298.2771604	3232.734217	309.4354026	M5	0.485714286	1.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.223	91	0	0	NA	3qG1	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.945542607	sgMsh2	cell line
chr3	80860236	80860236	AT	A	ENSMUST00000029654.14	1	ENSMUSG00000028020	FS	I/X	226	Glrb	ENSMUST00000029654.14:c.676del	ENSMUSP00000029654.8:p.Ile226LeufsTer37	H-2-Db	9	20	0	RRISNMATV	NA	SMMPMBEC	200.249	NA	NA	78	0.218	384.587	NA	NA	NA	531.15	NA	1363	NA	238.0235894	NA	200.2488359	M5	1.057142857	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.213	78	3	0	0	3qE3	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.903141593	sgMsh2	cell line
chr3	88895604	88895604	C	A	ENSMUST00000107498.8	1	ENSMUSG00000054199	missense	T/N	1174	Gon4l	ENSMUST00000107498.8:c.3521C>A	ENSMUSP00000103122.2:p.Thr1174Asn	H-2-Db	9	11	1	NLLVNPTTF	TLLVNPTTF	SMM	246.388	198.893	0.807	503	0.239	480.352	282.202	0.587	470.94	651.98	355.2	780.8	198.8932297	246.388254	209.2040077	308.7237209	M5	0.614285714	0.757142857	FALSE	FALSE	FALSE	0	TRUE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.23	503	48	14	0.291666667	3qF1	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.975223316	sgMsh2	cell line
chr3	105005546	105005546	C	A	ENSMUST00000077548.11	1	ENSMUSG00000062127	missense	A/S	341	Cttnbp2nl	ENSMUST00000077548.11:c.1021G>T	ENSMUSP00000076751.5:p.Ala341Ser	H-2-Kb	8	11	1	SAYSYAKA	AAYSYAKA	NetMHC	11.09	24.13	2.176	104	0.202	44.921	75.024	1.67	24.13	11.09	53.5	32.2	129.0446488	68.82401428	96.54727043	57.64212727	M5	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.22	104	53	12	0.226415094	3qF2.2	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.932822303	sgMsh2	cell line
chr3	123479673	123479673	A	G	ENSMUST00000029603.9	1	ENSMUSG00000027978	missense	N/S	306	Prss12	ENSMUST00000029603.9:c.917A>G	ENSMUSP00000029603.8:p.Asn306Ser	H-2-Kb	8	11	1	STYVACRL	NTYVACRL	NetMHC	12.64	327.83	25.936	169	0.249	25.429	206.593	8.124	327.83	12.64	224.5	22.3	181.4429089	28.55880296	188.68614	33.24604589	M5	0.828571429	0.828571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.246	169	0	0	NA	3qG1	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr3	89094889	89094889	A	T	ENSMUST00000196709.4	5	ENSMUSG00000059743	missense	Y/N	207	Fdps	ENSMUST00000196709.4:c.619T>A	ENSMUSP00000142770.1:p.Tyr207Asn	H-2-Kb	8	5	7	TAFYSFNL	TAFYSFYL	NetMHCpan	13.6	23	1.691	209	0.225	47.201	84.318	1.786	45.4	23.65	23	13.6	123.2366829	70.75220838	134.8155538	81.60936526	M5	0.8	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.233	209	1079	222	0.205746061	3qF1	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.987943621	sgMsh2	cell line
chr3	125713338	125713338	G	T	ENSMUST00000173932.7	5	ENSMUSG00000027971	missense	R/M	717	Ndst4	ENSMUST00000173932.7:c.2150G>T	ENSMUSP00000133341.2:p.Arg717Met	H-2-Kb	8	10	2	LMFNFYEV	LRFNFYEV	NetMHCpan	25.1	578.3	23.04	91	0.198	74.441	555.658	7.464	820.11	36.23	578.3	25.1	530.5667136	112.6522836	533.0156983	114.482736	M5	0.485714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.223	91	0	0	NA	3qG1	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.945542607	sgMsh2	cell line
chr3	108624645	108624645	A	G	ENSMUST00000051145.14	1	ENSMUSG00000040389	missense	Q/R	449	Wdr47	ENSMUST00000051145.14:c.1346A>G	ENSMUSP00000057482.8:p.Gln449Arg	H-2-Kb	8	11	1	RMYQQMLL	QMYQQMLL	NetMHC	67.4	94.29	1.399	96	0.302	121.812	213.148	1.75	94.29	67.4	182.1	93.4	244.1968177	150.2242346	524.4933667	251.0383085	M5	0.442857143	0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.253	96	9	2	0.222222222	3qF3	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr3	105978389	105978389	T	G	ENSMUST00000000573.8	1	ENSMUSG00000074340	missense	L/R	200	Ovgp1	ENSMUST00000000573.8:c.599T>G	ENSMUSP00000000573.2:p.Leu200Arg	H-2-Kb	8	5	7	TSYDALRL	TSYDALLL	NetMHCpan	51.2	92.7	1.811	90	0.3	65.195	129.261	1.983	119.93	68.34	92.7	51.2	138.5925865	62.04974485	172.480499	72.90209351	M5	-0.1	-0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.297	90	0	0	NA	3qF2.2	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr3	146584619	146584619	A	C	ENSMUST00000200633.1	1	ENSMUSG00000028185	missense	L/R	199	Dnase2b	ENSMUST00000200633.1:c.596T>G	ENSMUSP00000142872.1:p.Leu199Arg	H-2-Kb	8	5	7	STFHWKRI	STFHWKLI	SMMPMBEC	144.457	341.775	2.366	73	0.247	192.819	354.532	1.839	367.29	243.23	186.2	161.9	499.7352678	223.738128	341.7747702	144.4574685	M5	-0.842857143	-0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.231	73	0	0	NA	3qH2	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.979463418	sgMsh2	cell line
chr3	88449737	88449737	A	G	ENSMUST00000029700.11	1	ENSMUSG00000028064	missense	L/P	309	Sema4a	ENSMUST00000029700.11:c.926T>C	ENSMUSP00000029700.5:p.Leu309Pro	H-2-Kb	8	5	7	IIRHAVPL	IIRHAVLL	SMM	169.332	448.477	2.649	64	0.219	247.434	538.144	2.175	1021.35	349.03	569.6	310.9	448.476819	169.3323751	506.6872779	183.9670312	M5	0.714285714	0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.237	64	18	5	0.277777778	3qF1	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr3	107311516	107311516	C	CT	ENSMUST00000029502.13	1	ENSMUSG00000027896	FS	L/LX	478	Slc16a4	ENSMUST00000029502.13:c.1440dup	ENSMUSP00000029502.7:p.Val481CysfsTer5	H-2-Kb	8	9	6	VSLFFCTT	VSLFFVPL	NetMHCpan	99	3.7	0.037	120	0.167	150.102	2.995	0.02	3.56	384.31	3.7	99	2.252890066	166.6249377	2.430748352	133.5795574	M5	1.385714286	2.085714286	FALSE	FALSE	FALSE	1	FALSE	0	Strelka2;Vardict	2	0.1667	120	2	0	0	3qF2.3	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.706824899	sgMsh2	cell line
chr3	90190923	90190923	C	T	ENSMUST00000029548.8	5	ENSMUSG00000027939	missense	S/L	1394	Nup210l	ENSMUST00000029548.8:c.4181C>T	ENSMUSP00000029548.4:p.Ser1394Leu	H-2-Kb	8	8	4	RTLLAFPL	RTLSAFPL	NetMHCpan	184	237.9	1.293	139	0.201	202.884	249.781	1.231	490.66	429.13	237.9	184	235.9065504	193.0812048	261.6616044	212.686537	M5	1.957142857	1.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.209	139	0	0	NA	3qF1	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.886181188	sgMsh2	cell line
chr3	68927791	68927791	A	G	ENSMUST00000107812.7	5	ENSMUSG00000027778	missense	I/T	439	Ift80	ENSMUST00000107812.7:c.1316T>C	ENSMUSP00000103442.1:p.Ile439Thr	H-2-Kb	8	11	1	TIFLFEAS	IIFLFEAS	SMM	114.483	40.902	0.357	66	0.303	496.639	214.122	0.431	378.83	1363.31	368.3	827.8	40.90157201	114.482736	59.94321055	165.4778997	M5	1.628571429	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.285	66	41	8	0.195121951	3qE1	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr3	89266743	89266743	T	G	ENSMUST00000107462.7	3	ENSMUSG00000042737	missense	L/V	4	Dpm3	ENSMUST00000107462.7:c.10T>G	ENSMUSP00000103086.1:p.Leu4Val	H-2-Kb	8	4	1	VTQWLWGL	LTQWLWGL	SMM	283.622	1434.63	5.058	65	0.138	404.513	1559.675	3.856	6651.54	1488.78	1453.1	408.4	1434.630303	283.6220554	1666.249377	400.6268017	M5	0.171428571	0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.145	65	85	11	0.129411765	3qF1	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.614814699	sgMsh2	cell line
chr3	88083991	88083991	A	G	ENSMUST00000071812.10	1	ENSMUSG00000028068	missense	Y/C	33	Iqgap3	ENSMUST00000071812.10:c.98A>G	ENSMUSP00000071715.5:p.Tyr33Cys	H-2-Kb	9	7	5	VAYQCLCRL	VAYQYLCRL	NetMHC	18.28	4.91	0.269	97	0.268	35.488	9.601	0.271	4.91	18.28	4.3	23.1	14.29255921	47.87513372	15.42588183	49.68782653	M5	0.471428571	1.428571429	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	97	27	9	0.333333333	3qF1	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr3	83837498	83837498	T	C	ENSMUST00000029623.10	1	ENSMUSG00000027995	missense	H/R	426	Tlr2	ENSMUST00000029623.10:c.1277A>G	ENSMUSP00000029623.9:p.His426Arg	H-2-Kb	9	5	7	ISRNTFRPM	ISRNTFHPM	NetMHC	27	47.58	1.762	201	0.239	174.184	149.869	0.86	47.58	27	105.6	143.2	194.1377536	205.1681772	239.4693856	265.6134116	M5	-1.442857143	-0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.243	201	4	1	0.25	3qE3	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr3	123479673	123479673	A	G	ENSMUST00000029603.9	1	ENSMUSG00000027978	missense	N/S	306	Prss12	ENSMUST00000029603.9:c.917A>G	ENSMUSP00000029603.8:p.Asn306Ser	H-2-Kb	9	11	1	STYVACRLL	NTYVACRLL	NetMHC	39.19	569.67	14.536	169	0.249	135.345	730.573	5.398	569.67	39.19	439.1	64.1	891.4767066	206.5903351	1337.365144	333.6184037	M5	1.471428571	1.471428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.246	169	0	0	NA	3qG1	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr3	89231054	89231054	T	C	ENSMUST00000041142.3	1	ENSMUSG00000042784	missense	V/A	401	Muc1	ENSMUST00000041142.3:c.1202T>C	ENSMUSP00000041963.3:p.Val401Ala	H-2-Kb	9	5	7	SSYYSTAPF	SSYYSTVPF	NetMHC	39.69	96.89	2.441	222	0.239	59.853	105.341	1.76	96.89	39.69	82.9	40.8	113.7915466	78.90599489	136.536888	100.7511472	M5	-0.157142857	-0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.246	222	521	130	0.249520154	3qF1	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr3	125713338	125713338	G	T	ENSMUST00000173932.7	5	ENSMUSG00000027971	missense	R/M	717	Ndst4	ENSMUST00000173932.7:c.2150G>T	ENSMUSP00000133341.2:p.Arg717Met	H-2-Kb	9	10	2	LMFNFYEVI	LRFNFYEVI	NetMHCpan	20.1	409.7	20.383	91	0.198	48.786	390.665	8.008	545.32	58.25	409.7	20.1	371.6293451	53.59323836	283.3022345	43.97947088	M5	0.857142857	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.223	91	0	0	NA	3qG1	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.945542607	sgMsh2	cell line
chr3	89094889	89094889	A	T	ENSMUST00000196709.4	5	ENSMUSG00000059743	missense	Y/N	207	Fdps	ENSMUST00000196709.4:c.619T>A	ENSMUSP00000142770.1:p.Tyr207Asn	H-2-Kb	9	6	6	AFYSFNLPI	AFYSFYLPI	NetMHCpan	93	24.1	0.259	209	0.225	133.272	23.85	0.179	23.6	125.58	24.1	93	19.05943402	140.9645794	27.30549161	179.5767056	M5	0.557142857	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.233	209	1079	222	0.205746061	3qF1	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.987943621	sgMsh2	cell line
chr3	68927791	68927791	A	G	ENSMUST00000107812.7	5	ENSMUSG00000027778	missense	I/T	439	Ift80	ENSMUST00000107812.7:c.1316T>C	ENSMUSP00000103442.1:p.Ile439Thr	H-2-Kb	9	11	1	TIFLFEAST	IIFLFEAST	NetMHC	181.4	78.59	0.433	66	0.303	236.705	140.504	0.594	78.59	181.4	219.4	418.7	139.6722084	239.3922023	141.3350901	234.0183969	M5	0.885714286	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.285	66	41	8	0.195121951	3qE1	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr3	80860236	80860236	AT	A	ENSMUST00000029654.14	1	ENSMUSG00000028020	FS	I/X	226	Glrb	ENSMUST00000029654.14:c.676del	ENSMUSP00000029654.8:p.Ile226LeufsTer37	H-2-Kb	9	6	6	VQLEKLLYL	VQLEKIALP	NetMHC	204.77	13999.81	68.368	78	0.218	281.513	8030.813	28.527	13999.81	204.77	16761.3	288.8	1256.348137	274.2268658	2061.816449	309.2074862	M5	0.928571429	0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.213	78	3	0	0	3qE3	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.903141593	sgMsh2	cell line
chr3	95008482	95008482	T	C	ENSMUST00000019482.7	1	ENSMUSG00000019338	missense	K/R	993	Zfp687	ENSMUST00000019482.7:c.2978A>G	ENSMUSP00000019482.1:p.Lys993Arg	H-2-Kb	9	8	4	SVKRFPCRL	SVKKFPCRL	NetMHCpan	181.6	255.5	1.407	68	0.206	436.752	462.473	1.059	295.28	204.99	255.5	181.6	629.6656471	668.5132201	679.5947262	729.8775406	M5	-0.771428571	-0.185714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.203	68	49	14	0.285714286	3qF2.1	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.860740579	sgMsh2	cell line
chr3	89094889	89094889	A	T	ENSMUST00000196709.4	5	ENSMUSG00000059743	missense	Y/N	207	Fdps	ENSMUST00000196709.4:c.619T>A	ENSMUSP00000142770.1:p.Tyr207Asn	H-2-Kb	9	4	8	KTAFYSFNL	KTAFYSFYL	NetMHCpan	77.9	114.4	1.469	209	0.225	368.731	477.313	1.294	513.96	265.28	114.4	77.9	440.6664633	472.1826226	644.5401859	668.728758	M5	0.8	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.233	209	1079	222	0.205746061	3qF1	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.987943621	sgMsh2	cell line
chr3	129633453	129633453	A	G	ENSMUST00000071402.6	1	ENSMUSG00000041220	missense	Y/C	256	Elovl6	ENSMUST00000071402.6:c.767A>G	ENSMUSP00000071351.2:p.Tyr256Cys	H-2-Kb	9	4	8	CHFFFEACI	CHFFFEAYI	NetMHCpan	341.5	130.1	0.381	71	0.183	390.203	172.808	0.443	145.58	477.24	130.1	341.5	200.0368468	362.3347605	282.000579	418.0709584	M5	1.957142857	1.957142857	TRUE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.194	71	137	27	0.197080292	3qG3	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.822579667	sgMsh2	cell line
chr4	136554214	136554214	T	A	ENSMUST00000105847.7	5	ENSMUSG00000036940	missense	K/M	682	Kdm1a	ENSMUST00000105847.7:c.2045A>T	ENSMUSP00000101473.1:p.Lys682Met	H-2-Db	9	6	6	FGNLNMVVL	FGNLNKVVL	NetMHC	15.68	50.61	3.228	86	0.43	76.126	173.018	2.273	50.61	15.68	144.4	54.4	281.5917975	138.8736979	201.6368945	97.8520661	M5	1.557142857	1.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.457	86	159	5	0.031446541	4qD3	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	2	1	sgMsh2	cell line
chr4	45307923	45307923	CT	C	ENSMUST00000044673.8	1	ENSMUSG00000035601	FS	L/X	203	Trmt10b	ENSMUST00000044673.8:c.612del	ENSMUSP00000041052.2:p.Pro205LeufsTer8	H-2-Db	9	9	5	FSLFLWKPL	FSLFPLETL	SMM	212.628	545.281	2.564	216	0.319	281.074	540.89	1.924	345.62	310.63	884.2	463.6	545.2805415	212.6277776	536.5003381	251.518538	M5	1.114285714	1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.328	216	33	4	0.121212121	4qB1	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr3	155137385	155137385	AT	A	ENSMUST00000194376.1	1	ENSMUSG00000028182	FS	N/X	298	Lrriq3	ENSMUST00000194376.1:c.897del	ENSMUSP00000142127.1:p.His300ThrfsTer32	H-2-Db	9	7	7	KLWVNFTEV	NA	SMMPMBEC	272.001	NA	NA	182	0.214	443.324	NA	NA	NA	666.64	NA	596.5	NA	290.1482797	NA	272.0006864	M5	0.371428571	0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.213	182	0	0	NA	3qH4	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.903141593	sgMsh2	cell line
chr4	149106266	149106266	A	G	ENSMUST00000030816.3	1	ENSMUSG00000028974	missense	K/R	84	Dffa	ENSMUST00000030816.3:c.251A>G	ENSMUSP00000030816.3:p.Lys84Arg	H-2-Kb	8	8	4	SNTRFVAL	SNTKFVAL	NetMHC	13.69	27.26	1.991	108	0.241	28.582	49.82	1.743	27.26	13.69	38.3	23.3	61.33946729	33.86413603	84.08915726	46.10414792	M5	0.557142857	0.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe	3	0.263	108	13	2	0.153846154	4qE2	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr4	3184754	3184754	T	C	ENSMUST00000105159.4	NA	ENSMUSG00000115466	missense	I/M	184	Vmn1r3	ENSMUST00000105159.4:c.552A>G	ENSMUSP00000100790.2:p.Ile184Met	H-2-Kb	8	6	6	ATTLYMSL	ATTLYISL	NetMHC	43.12	141.98	3.293	29	0.586	74.21	132.276	1.782	141.98	43.12	88.5	57.9	127.8615603	90.51905263	136.691025	105.3755853	M5	0.857142857	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe	3	0.59	29	0	0	NA	4qA1	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	2	1	sgMsh2	cell line
chr4	48204258	48204258	C	A	ENSMUST00000030028.4	1	ENSMUSG00000028343	missense	C/F	301	Erp44	ENSMUST00000030028.4:c.902G>T	ENSMUSP00000030028.4:p.Cys301Phe	H-2-Kb	8	4	8	INFLHADF	INFLHADC	NetMHCpan	41.7	258.4	6.197	78	0.308	92.95	217.044	2.335	375.25	65.19	258.4	41.7	137.6385219	137.3219621	175.6871509	120.7090967	M5	0.142857143	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.333	78	191	80	0.418848168	4qB1	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr4	45307923	45307923	CT	C	ENSMUST00000044673.8	1	ENSMUSG00000035601	FS	L/X	203	Trmt10b	ENSMUST00000044673.8:c.612del	ENSMUSP00000041052.2:p.Pro205LeufsTer8	H-2-Kb	8	10	4	SLFLWKPL	SLFPLETL	NetMHCpan	45.9	278.7	6.072	216	0.319	65.889	861.472	13.075	1564.85	78.53	278.7	45.9	803.0452175	78.47656766	919.8986892	53.30156983	M5	1.114285714	1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.328	216	33	4	0.121212121	4qB1	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr4	139640665	139640665	A	G	ENSMUST00000039818.9	1	ENSMUSG00000028737	missense	T/A	306	Aldh4a1	ENSMUST00000039818.9:c.916A>G	ENSMUSP00000043821.9:p.Thr306Ala	H-2-Kb	8	8	4	RFRAFPRL	RFRTFPRL	SMM	54.293	53.179	0.979	68	0.324	87.052	74.246	0.853	78.71	97.59	160.4	151.2	53.17897962	54.29252	69.78145169	76.51384027	M5	0.085714286	0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.342	68	15	4	0.266666667	4qD3	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr4	115068554	115068554	TC	T	ENSMUST00000030489.8	1	ENSMUSG00000028717	FS	I/X	273	Tal1	ENSMUST00000030489.8:c.824del	ENSMUSP00000030489.2:p.Pro275LeufsTer82	H-2-Kb	8	77	0	QAGAFRPL	NA	NetMHC	137.79	NA	NA	18	0.278	228.578	NA	NA	NA	137.79	NA	588.8	NA	207.8452003	NA	249.310173	M5	0.528571429	0.528571429	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.261	18	0	0	NA	4qD1	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr4	120886945	120886945	C	T	ENSMUST00000071093.8	1	ENSMUSG00000032890	missense	P/L	124	Rims3	ENSMUST00000071093.8:c.371C>T	ENSMUSP00000068178.2:p.Pro124Leu	H-2-Kb	8	7	5	TFIFLTRL	TFIFPTRL	NetMHCpan	49.6	106	2.137	57	0.281	194.02	549.467	2.832	531.73	162.75	106	49.6	567.204934	225.2890066	685.0779666	240.8463117	M5	1.785714286	1.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.291	57	0	0	NA	4qD2.2	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr4	141860564	141860564	T	C	ENSMUST00000036854.3	1	ENSMUSG00000040659	missense	N/S	192	Efhd2	ENSMUST00000036854.3:c.575A>G	ENSMUSP00000044502.3:p.Asn192Ser	H-2-Kb	8	10	2	KSFFEAKV	KNFFEAKV	NetMHCpan	179.1	204.1	1.14	33	0.364	248.675	448.272	1.803	437.62	277.19	204.1	179.1	583.0959165	315.3116375	458.9231861	220.1608027	M5	0.485714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.394	33	61	9	0.147540984	4qE1	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr4	20064005	20064005	A	C	ENSMUST00000098242.3	1	ENSMUSG00000073987	missense	K/T	234	Ggh	ENSMUST00000098242.3:c.701A>C	ENSMUSP00000095843.3:p.Lys234Thr	H-2-Kb	8	10	2	FTYPVYAV	FKYPVYAV	SMM	232.135	1272.741	5.483	81	0.432	311.21	3820.621	12.277	5414.14	319.82	5562.8	302.6	1272.740898	232.1346655	2227.101447	387.9180607	M5	0.757142857	0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.419	81	122	32	0.262295082	4qA3	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr4	96479086	96479086	T	A	ENSMUST00000124729.3	5	ENSMUSG00000082932	missense	D/V	265	Cyp2j8	ENSMUST00000124729.3:c.794A>T	ENSMUSP00000134591.1:p.Asp265Val	H-2-Kb	8	4	8	LFFSHVMV	LFFSHVMD	SMM	259.263	1732.766	6.683	111	0.351	393.873	6808.358	17.286	11883.95	500.84	12681.9	699	1732.766328	259.2626764	1632.074578	286.906244	M5	1.7	1.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.346	111	0	0	NA	4qC5	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr4	53083890	53083890	A	G	ENSMUST00000030010.3	1	ENSMUSG00000015243	missense	W/R	648	Abca1	ENSMUST00000030010.3:c.1942T>C	ENSMUSP00000030010.3:p.Trp648Arg	H-2-Kb	8	11	1	RIYSVAVI	WIYSVAVI	SMM	334.765	451.586	1.349	62	0.29	400.859	795.858	1.985	1140.13	619.27	1407.1	446.3	451.5855118	334.7649647	409.0157201	355.4184757	M5	2.442857143	2.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.296	62	0	0	NA	4qB2	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr4	150897465	150897465	T	C	ENSMUST00000105674.7	5	ENSMUSG00000028964	missense	Y/C	139	Park7	ENSMUST00000105674.7:c.416A>G	ENSMUSP00000101299.1:p.Tyr139Cys	H-2-Kb	8	11	1	CSYSESRV	YSYSESRV	SMMPMBEC	265.302	171.688	0.647	45	0.289	428.947	279.259	0.651	332.19	655.1	385.1	583.9	226.3288934	273.9933359	171.6880231	265.3016799	M5	-1.071428571	-1.071428571	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.301	45	394	96	0.243654822	4qE2	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr4	143895385	143895385	T	C	ENSMUST00000105767.1	5	ENSMUSG00000078512	missense	I/V	467	Pramef6	ENSMUST00000105767.1:c.1399A>G	ENSMUSP00000101393.1:p.Ile467Val	H-2-Kb	9	13	2	CVYSFVGNI	CIYSFVGNI	NetMHC	23.45	22.06	0.941	217	0.378	90.759	96.799	1.067	22.06	23.45	42.9	35.6	150.6988715	145.9183802	252.4933823	247.8848587	M5	0.785714286	1.6	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.38	217	0	0	NA	4qE1	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr4	124942369	124942369	T	C	ENSMUST00000094769.12	1	ENSMUSG00000044730	missense	Y/H	158	9930104L06Rik	ENSMUST00000094769.12:c.472T>C	ENSMUSP00000154851.1:p.Tyr158His	H-2-Kb	9	4	8	SSYLKRKHL	SSYLKRKYL	NetMHC	33.01	28.82	0.873	88	0.25	69.015	66.097	0.958	28.82	33.01	64.1	72.7	68.09418088	65.32960014	84.382036	77.13473645	M5	-1.314285714	-1.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.277	88	12	4	0.333333333	4qD2.2	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr4	120886945	120886945	C	T	ENSMUST00000071093.8	1	ENSMUSG00000032890	missense	P/L	124	Rims3	ENSMUST00000071093.8:c.371C>T	ENSMUSP00000068178.2:p.Pro124Leu	H-2-Kb	9	6	6	GTFIFLTRL	GTFIFPTRL	NetMHCpan	28.1	39.6	1.409	57	0.281	60.436	144.364	2.389	86.31	36.1	39.6	28.1	215.332707	91.43448014	202.4184057	84.77152578	M5	1.785714286	1.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.291	57	0	0	NA	4qD2.2	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr4	3184754	3184754	T	C	ENSMUST00000105159.4	NA	ENSMUSG00000115466	missense	I/M	184	Vmn1r3	ENSMUST00000105159.4:c.552A>G	ENSMUSP00000100790.2:p.Ile184Met	H-2-Kb	9	5	7	VATTLYMSL	VATTLYISL	NetMHCpan	39.8	70.5	1.771	29	0.586	104.861	146.566	1.398	135.28	50.46	70.5	39.8	164.1005362	159.261206	157.8519677	159.312554	M5	0.857142857	1.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe	3	0.59	29	0	0	NA	4qA1	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	2	1	sgMsh2	cell line
chr4	3184754	3184754	T	C	ENSMUST00000105159.4	NA	ENSMUSG00000115466	missense	I/M	184	Vmn1r3	ENSMUST00000105159.4:c.552A>G	ENSMUSP00000100790.2:p.Ile184Met	H-2-Kb	9	11	1	MSLVCFSDV	ISLVCFSDV	NetMHC	89.12	36.66	0.411	29	0.586	459.064	206.359	0.45	36.66	89.12	173.8	451.2	291.1454451	507.1191374	238.9186213	466.9280884	M5	1.885714286	1.942857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe	3	0.59	29	0	0	NA	4qA1	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	2	1	sgMsh2	cell line
chr3	157312902	157312902	C	T	ENSMUST00000074015.10	1	ENSMUSG00000040037	missense	L/F	347	Negr1	ENSMUST00000074015.10:c.1039C>T	ENSMUSP00000073664.4:p.Leu347Phe	H-2-Kb	9	12	9	IFYLKNAIF	IFYLKNAIL	SMM	146.592	86.918	0.593	104	0.288	161.23	88.179	0.547	89.44	172.75	131.7	353.4	86.91805512	146.5919088	86.54659777	149.7097207	M5	0.6	0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.297	104	0	0	NA	3qH4	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr4	45307923	45307923	CT	C	ENSMUST00000044673.8	1	ENSMUSG00000035601	FS	L/X	203	Trmt10b	ENSMUST00000044673.8:c.612del	ENSMUSP00000041052.2:p.Pro205LeufsTer8	H-2-Kb	9	9	5	FSLFLWKPL	FSLFPLETL	NetMHCpan	127.2	1483.2	11.66	216	0.319	215.539	984.497	4.568	761.94	209.13	1483.2	127.2	889.4263671	253.577082	1079.567993	221.9473684	M5	1.114285714	1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.328	216	33	4	0.121212121	4qB1	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr4	143895385	143895385	T	C	ENSMUST00000105767.1	5	ENSMUSG00000078512	missense	I/V	467	Pramef6	ENSMUST00000105767.1:c.1399A>G	ENSMUSP00000101393.1:p.Ile467Val	H-2-Kb	9	10	5	RNFCVYSFV	RNFCIYSFV	NetMHCpan	85.7	73	0.852	217	0.378	357.494	308.946	0.864	234.97	248.06	73	85.7	382.9217191	472.1826226	388.3738676	466.9280884	M5	2.057142857	2.057142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.38	217	0	0	NA	4qE1	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr3	155137385	155137385	AT	A	ENSMUST00000194376.1	1	ENSMUSG00000028182	FS	N/X	298	Lrriq3	ENSMUST00000194376.1:c.897del	ENSMUSP00000142127.1:p.His300ThrfsTer32	H-2-Kb	9	21	0	LTFHQYKGI	NA	NetMHCpan	249.3	NA	NA	182	0.214	334.616	NA	NA	NA	317.47	NA	249.3	NA	377.6678362	NA	351.7628732	M5	-0.714285714	-0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.213	182	0	0	NA	3qH4	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.903141593	sgMsh2	cell line
chr4	139640665	139640665	A	G	ENSMUST00000039818.9	1	ENSMUSG00000028737	missense	T/A	306	Aldh4a1	ENSMUST00000039818.9:c.916A>G	ENSMUSP00000043821.9:p.Thr306Ala	H-2-Kb	9	4	8	QNLDRFRAF	QNLDRFRTF	SMM	226.001	239.944	1.062	68	0.324	312.457	354.948	1.136	385.37	323.44	1098.6	1301.5	239.9440583	226.0008122	324.526376	301.4740949	M5	-0.185714286	-0.185714286	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.342	68	15	4	0.266666667	4qD3	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr3	155137385	155137385	AT	A	ENSMUST00000194376.1	1	ENSMUSG00000028182	FS	N/X	298	Lrriq3	ENSMUST00000194376.1:c.897del	ENSMUSP00000142127.1:p.His300ThrfsTer32	H-2-Kb	9	10	4	VNFTEVGWM	NA	SMMPMBEC	346.937	NA	NA	182	0.214	357.03	NA	NA	NA	962.72	NA	361.6	NA	352.4601324	NA	346.9365057	M5	0.485714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.213	182	0	0	NA	3qH4	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.903141593	sgMsh2	cell line
chr5	34848948	34848948	T	A	ENSMUST00000080036.2	1	ENSMUSG00000029104	missense	H/Q	1400	Htt	ENSMUST00000080036.2:c.4200T>A	ENSMUSP00000078945.2:p.His1400Gln	H-2-Db	9	8	4	NAIQNHIRL	NAIHNHIRL	NetMHCpan	42.5	130.5	3.071	188	0.271	128.892	250.646	1.945	219.7	50.95	130.5	42.5	281.5917975	206.8330804	333.8643134	252.6794949	M5	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.272	188	29	6	0.206896552	5qB2	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr4	155268251	155268251	T	G	ENSMUST00000030922.14	1	ENSMUSG00000029053	missense	K/T	473	Prkcz	ENSMUST00000030922.14:c.1418A>C	ENSMUSP00000030922.7:p.Lys473Thr	H-2-Db	9	5	7	FQVILETPI	FQVILEKPI	NetMHC	96.91	1744.74	18.004	159	0.296	220.135	1380.05	6.269	1744.74	96.91	2345.3	278.3	1015.359882	224.7087583	992.1332393	215.5609059	M5	1.6	1.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.303	159	14	0	0	4qE2	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr5	63806698	63806698	A	T	ENSMUST00000159584.2	1	ENSMUSG00000090061	missense	K/N	1208	Nwd2	ENSMUST00000159584.2:c.3624A>T	ENSMUSP00000124712.1:p.Lys1208Asn	H-2-Db	9	7	5	ILICNALSI	ILICKALSI	NetMHCpan	141.1	7481.9	53.026	178	0.191	238.859	9795.44	41.009	18580.86	208.18	7481.9	141.1	8762.337965	269.537999	10828.54237	322.5299134	M5	1.828571429	2.485714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	178	0	0	NA	5qC3.1	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	0.848020275	sgMsh2	cell line
chr5	57721359	57721359	T	C	ENSMUST00000191837.5	1	ENSMUSG00000029108	missense	L/S	752	Pcdh7	ENSMUST00000191837.5:c.2255T>C	ENSMUSP00000142319.1:p.Leu752Ser	H-2-Kb	8	5	7	RNISYTSL	RNISYTLL	NetMHC	17.31	17.09	0.987	209	0.196	37.571	44.968	1.197	17.09	17.31	18.2	19.2	71.73646964	55.94225905	78.83879904	59.94321055	M5	0.171428571	0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.186	209	34	0	0	5qC1	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	0.788658856	sgMsh2	cell line
chr5	20886561	20886561	A	G	ENSMUST00000115259.2	1	ENSMUSG00000045435	missense	Y/C	108	Tmem60	ENSMUST00000115259.2:c.323A>G	ENSMUSP00000110914.2:p.Tyr108Cys	H-2-Kb	8	9	3	LSCVFIPL	LSYVFIPL	SMMPMBEC	18.739	1.883	0.1	217	0.29	26.189	2.268	0.087	2.35	26.63	3.4	62.9	2.186452264	25.74779247	1.882521739	18.73872337	M5	2.2	2.2	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.284	217	71	14	0.197183099	5qA3	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr5	8397252	8397252	GA	G	ENSMUST00000171808.7	1	ENSMUSG00000002297	FS	S/X	653	Dbf4	ENSMUST00000171808.7:c.1957del	ENSMUSP00000132906.1:p.Ser653LeufsTer20	H-2-Kb	8	6	6	LSTFFLPL	LSTFFSSP	NetMHCpan	19	5938	312.526	74	0.108	50.419	3863.767	76.632	12957.18	47.66	5938	19	1639.607892	53.17897962	1789.534189	54.54312289	M5	1.442857143	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.106	74	111	22	0.198198198	5qA1	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	0.449450746	sgMsh2	cell line
chr4	155966486	155966486	T	C	ENSMUST00000024338.4	1	ENSMUSG00000023571	missense	M/T	304	C1qtnf12	ENSMUST00000024338.4:c.911T>C	ENSMUSP00000024338.4:p.Met304Thr	H-2-Kb	8	12	6	SSFSGTLL	SSFSGMLL	NetMHCpan	66.9	50.3	0.752	111	0.378	86.988	70.723	0.813	34.09	71	50.3	66.9	95.22259222	121.8260042	91.14650073	102.9769442	M5	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.379	111	1	1	1	4qE2	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr5	110277756	110277756	A	G	ENSMUST00000031472.11	1	ENSMUSG00000029499	missense	F/L	138	Pxmp2	ENSMUST00000031472.11:c.412T>C	ENSMUSP00000031472.5:p.Phe138Leu	H-2-Kb	8	8	4	VSVLVAKM	VSVFVAKM	NetMHC	116.68	141.33	1.211	99	0.263	223.541	229.414	1.026	141.33	116.68	47.9	183	323.3999884	288.2305431	317.4972734	264.0827294	M5	1.6	1.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.255	99	18	6	0.333333333	5qF	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr5	86538011	86538011	T	C	ENSMUST00000116553.8	1	ENSMUSG00000048764	missense	M/V	166	Tmprss11f	ENSMUST00000116553.8:c.496A>G	ENSMUSP00000112252.2:p.Met166Val	H-2-Kb	8	9	3	ISVPSFSL	ISMPSFSL	NetMHCpan	102.9	36.1	0.351	127	0.236	207.483	135.317	0.652	55.98	137.8	36.1	102.9	214.6545013	277.1660292	219.1492557	335.5366776	M5	0.971428571	1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.228	127	0	0	NA	5qE1	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	0.966743114	sgMsh2	cell line
chr5	16359028	16359028	T	C	ENSMUST00000039370.13	1	ENSMUSG00000040118	missense	V/A	903	Cacna2d1	ENSMUST00000039370.13:c.2708T>C	ENSMUSP00000049457.7:p.Val903Ala	H-2-Kb	8	4	8	KSYDYQSA	KSYDYQSV	NetMHCpan	154.7	15.4	0.1	87	0.184	204.33	27.778	0.136	12.68	168.92	15.4	154.7	40.15503419	239.7397234	51.49202839	247.5939338	M5	-1.342857143	-1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.195	87	0	0	NA	5qA3	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	0.826819768	sgMsh2	cell line
chr4	155069021	155069021	T	G	ENSMUST00000103180.3	1	ENSMUSG00000029047	missense	I/M	182	Pex10	ENSMUST00000103180.3:c.546T>G	ENSMUSP00000099469.3:p.Ile182Met	H-2-Kb	8	11	1	MHGTFYHL	IHGTFYHL	SMMPMBEC	155.503	71.571	0.46	59	0.22	235.779	80.872	0.343	80.51	309.1	169.9	352	81.23440428	162.4575876	71.57148034	155.5034397	M5	-0.314285714	-0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	59	5	0	0	4qE2	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	0.958262911	sgMsh2	cell line
chr5	34848948	34848948	T	A	ENSMUST00000080036.2	1	ENSMUSG00000029104	missense	H/Q	1400	Htt	ENSMUST00000080036.2:c.4200T>A	ENSMUSP00000078945.2:p.His1400Gln	H-2-Kb	8	9	3	AIQNHIRL	AIHNHIRL	SMM	233.206	203.582	0.873	188	0.271	335.761	210.611	0.627	187.86	352.56	450.7	1017.2	203.5822922	233.2061504	217.6406428	318.9627742	M5	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.272	188	29	6	0.206896552	5qB2	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr5	3673162	3673162	T	C	ENSMUST00000014673.8	1	ENSMUSG00000014529	missense	I/T	231	Tmbim7	ENSMUST00000014673.8:c.692T>C	ENSMUSP00000014673.2:p.Ile231Thr	H-2-Kb	8	7	5	LIYGTIAL	LIYGIIAL	SMMPMBEC	338.641	366.218	1.081	131	0.275	379.899	400.735	1.055	501.32	404.38	344.3	444	435.2512229	355.4184757	366.2182643	338.6413603	M5	1.742857143	1.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.263	131	0	0	NA	5qA1	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr5	123758488	123758488	A	G	ENSMUST00000031366.11	1	ENSMUSG00000029414	missense	N/D	138	Kntc1	ENSMUST00000031366.11:c.412A>G	ENSMUSP00000031366.7:p.Asn138Asp	H-2-Kb	8	5	7	SQRTYRDL	SQRTYRNL	SMM	239.74	37.217	0.155	138	0.464	352.064	42.914	0.122	25.66	412.56	218.3	1756.2	37.21688324	239.7397234	48.61160944	291.5680954	M5	-2.028571429	-2.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.432	138	62	25	0.403225806	5qF	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	2	1	sgMsh2	cell line
chr5	3673162	3673162	T	C	ENSMUST00000014673.8	1	ENSMUSG00000014529	missense	I/T	231	Tmbim7	ENSMUST00000014673.8:c.692T>C	ENSMUSP00000014673.2:p.Ile231Thr	H-2-Kb	8	5	7	VLLIYGTI	VLLIYGII	NetMHCpan	142	579.7	4.082	131	0.275	310.354	756.542	2.438	1677.7	445.42	579.7	142	772.2181412	337.0854446	740.8665723	283.6220554	M5	2.028571429	2.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.263	131	0	0	NA	5qA1	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr5	29478259	29478259	T	A	ENSMUST00000165512.3	1	ENSMUSG00000001566	missense	N/I	6	Mnx1	ENSMUST00000165512.3:c.17A>T	ENSMUSP00000129503.2:p.Asn6Ile	H-2-Kb	8	5	2	KIFRIDAL	KNFRIDAL	NetMHCpan	239.7	176.2	0.735	78	0.256	312.442	360.883	1.155	460.29	468.11	176.2	239.7	352.1599796	316.0385059	369.6068402	308.8445912	M5	1.342857143	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.265	78	0	0	NA	5qB1	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr5	8397252	8397252	GA	G	ENSMUST00000171808.7	1	ENSMUSG00000002297	FS	S/X	653	Dbf4	ENSMUST00000171808.7:c.1957del	ENSMUSP00000132906.1:p.Ser653LeufsTer20	H-2-Kb	8	8	4	TFFLPLQL	NA	SMM	230.537	NA	NA	74	0.108	298.985	NA	NA	NA	479.66	NA	335.1	NA	230.5366617	NA	262.8693795	M5	1.7	1.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.106	74	111	22	0.198198198	5qA1	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	0.449450746	sgMsh2	cell line
chr4	155069021	155069021	T	G	ENSMUST00000103180.3	1	ENSMUSG00000029047	missense	I/M	182	Pex10	ENSMUST00000103180.3:c.546T>G	ENSMUSP00000099469.3:p.Ile182Met	H-2-Kb	8	6	6	VAWFYMHG	VAWFYIHG	SMM	88.052	124.377	1.413	59	0.22	255.688	481.612	1.884	1556.42	599.87	818.1	399.5	124.3769779	88.05215715	145.1242539	111.8767908	M5	0.1	0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	59	5	0	0	4qE2	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	0.958262911	sgMsh2	cell line
chr5	87694728	87694728	C	T	ENSMUST00000197422.4	1	ENSMUSG00000063157	missense	A/T	147	Csn2	ENSMUST00000197422.4:c.439G>A	ENSMUSP00000143341.1:p.Ala147Thr	H-2-Kb	8	9	3	SLTSLANL	SLASLANL	SMM	381.716	341.775	0.895	155	0.465	487.6	375.638	0.77	720.32	664.91	348.8	569	341.7747702	381.7156799	402.476011	406.2000757	M5	1.171428571	1.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.466	155	0	0	NA	5qE1	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	2	1	sgMsh2	cell line
chr5	92454754	92454754	G	A	ENSMUST00000031377.8	1	ENSMUSG00000029426	missense	L/F	268	Scarb2	ENSMUST00000031377.8:c.802C>T	ENSMUSP00000031377.7:p.Leu268Phe	H-2-Kb	9	8	4	VLYFFPSDL	VLYLFPSDL	NetMHCpan	19.1	22	1.152	117	0.342	86.179	72.626	0.843	28.81	53.44	22	19.1	116.4420922	125.0575741	125.0978944	118.9186581	M5	0.314285714	1.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.331	117	251	51	0.203187251	5qE2	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr5	101944143	101944143	T	A	ENSMUST00000053177.13	1	ENSMUSG00000043940	missense	K/N	443	Wdfy3	ENSMUST00000053177.13:c.1329A>T	ENSMUSP00000052607.7:p.Lys443Asn	H-2-Kb	9	8	4	VQNNYFEML	VQNKYFEML	NetMHC	62.66	107.77	1.72	132	0.22	165.336	170.625	1.032	107.77	62.66	106.6	107.7	272.3391013	275.4926395	233.4801695	222.9718309	M5	-0.471428571	-0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.202	132	44	10	0.227272727	5qE5	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	0.856500478	sgMsh2	cell line
chr5	8397252	8397252	GA	G	ENSMUST00000171808.7	1	ENSMUSG00000002297	FS	S/X	653	Dbf4	ENSMUST00000171808.7:c.1957del	ENSMUSP00000132906.1:p.Ser653LeufsTer20	H-2-Kb	9	8	4	TFFLPLQLL	NA	NetMHC	150.3	NA	NA	74	0.108	272.968	NA	NA	NA	150.3	NA	424.1	NA	213.850367	NA	332.0855664	M5	1.842857143	1.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.106	74	111	22	0.198198198	5qA1	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	0.449450746	sgMsh2	cell line
chr4	155069021	155069021	T	G	ENSMUST00000103180.3	1	ENSMUSG00000029047	missense	I/M	182	Pex10	ENSMUST00000103180.3:c.546T>G	ENSMUSP00000099469.3:p.Ile182Met	H-2-Kb	9	10	2	YMHGTFYHL	YIHGTFYHL	NetMHC	159.62	219.23	1.373	59	0.22	188.296	355.71	1.889	219.23	159.62	277.8	182.9	433.6206938	193.6912491	687.4640623	332.0855664	M5	-0.314285714	-0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	59	5	0	0	4qE2	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	0.958262911	sgMsh2	cell line
chr4	155069021	155069021	T	G	ENSMUST00000103180.3	1	ENSMUSG00000029047	missense	I/M	182	Pex10	ENSMUST00000103180.3:c.546T>G	ENSMUSP00000099469.3:p.Ile182Met	H-2-Kb	9	7	5	AWFYMHGTF	AWFYIHGTF	SMM	130.05	341.279	2.624	59	0.22	193.94	435.221	2.244	455.25	209.54	926.2	545.8	341.2793414	130.0498932	415.1929781	178.3405083	M5	0.271428571	0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	59	5	0	0	4qE2	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	0.958262911	sgMsh2	cell line
chr5	101944090	101944090	T	C	ENSMUST00000053177.13	1	ENSMUSG00000043940	missense	K/R	461	Wdfy3	ENSMUST00000053177.13:c.1382A>G	ENSMUSP00000052607.7:p.Lys461Arg	H-2-Kb	9	5	7	LNYIPCREL	LNYIPCKEL	NetMHCpan	162.8	323.2	1.985	136	0.176	262.115	363.046	1.385	484.84	218.66	323.2	162.8	341.2793414	305.5694975	384.8132346	375.1889162	M5	-0.014285714	-0.014285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.169	136	44	8	0.181818182	5qE5	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	0.716577132	sgMsh2	cell line
chr5	3673162	3673162	T	C	ENSMUST00000014673.8	1	ENSMUSG00000014529	missense	I/T	231	Tmbim7	ENSMUST00000014673.8:c.692T>C	ENSMUSP00000014673.2:p.Ile231Thr	H-2-Kb	9	7	5	LIYGTIALV	LIYGIIALV	NetMHC	255.57	661.63	2.589	131	0.275	399.072	568.543	1.425	661.63	255.57	1069.9	902.4	475.4556362	346.02701	472.3348608	452.1161284	M5	1.7	1.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.263	131	0	0	NA	5qA1	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr5	29478259	29478259	T	A	ENSMUST00000165512.3	1	ENSMUSG00000001566	missense	N/I	6	Mnx1	ENSMUST00000165512.3:c.17A>T	ENSMUSP00000129503.2:p.Asn6Ile	H-2-Kb	9	5	2	KIFRIDALL	KNFRIDALL	NetMHC	294.87	154.93	0.525	78	0.256	482.133	349.528	0.725	154.93	294.87	223.6	334.6	475.4556362	629.6656471	486.6872848	649.007925	M5	1.242857143	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.265	78	0	0	NA	5qB1	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr5	16359028	16359028	T	C	ENSMUST00000039370.13	1	ENSMUSG00000040118	missense	V/A	903	Cacna2d1	ENSMUST00000039370.13:c.2708T>C	ENSMUSP00000049457.7:p.Val903Ala	H-2-Kb	9	4	8	KSYDYQSAC	KSYDYQSVC	NetMHCpan	276.2	497	1.799	87	0.184	416.065	787.162	1.892	922.32	305.81	497	276.2	924.9324152	656.3114787	652.0036095	526.3201534	M5	-0.871428571	-0.871428571	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.195	87	0	0	NA	5qA3	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	0.826819768	sgMsh2	cell line
chr5	8397252	8397252	GA	G	ENSMUST00000171808.7	1	ENSMUSG00000002297	FS	S/X	653	Dbf4	ENSMUST00000171808.7:c.1957del	ENSMUSP00000132906.1:p.Ser653LeufsTer20	H-2-Kb	9	7	5	STFFLPLQL	NA	NetMHCpan	82.6	NA	NA	74	0.108	310.245	NA	NA	NA	335.88	NA	82.6	NA	345.2311699	NA	284.6098982	M5	1.7	1.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.106	74	111	22	0.198198198	5qA1	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	0.449450746	sgMsh2	cell line
chr5	3673162	3673162	T	C	ENSMUST00000014673.8	1	ENSMUSG00000014529	missense	I/T	231	Tmbim7	ENSMUST00000014673.8:c.692T>C	ENSMUSP00000014673.2:p.Ile231Thr	H-2-Kb	9	4	8	SVLLIYGTI	SVLLIYGII	NetMHCpan	276.2	1014.9	3.675	131	0.275	446.055	804.767	1.804	1087.34	388.32	1014.9	276.2	565.0800826	505.9527957	594.6343592	503.7905305	M5	2.028571429	2.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.263	131	0	0	NA	5qA1	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr4	155069021	155069021	T	G	ENSMUST00000103180.3	1	ENSMUSG00000029047	missense	I/M	182	Pex10	ENSMUST00000103180.3:c.546T>G	ENSMUSP00000099469.3:p.Ile182Met	H-2-Kb	9	6	6	VAWFYMHGT	VAWFYIHGT	SMMPMBEC	296.654	386.589	1.303	59	0.22	366.731	465.832	1.27	684.88	393.67	468.1	352.3	463.5643185	381.1623536	386.5894518	296.6538575	M5	-0.257142857	0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	59	5	0	0	4qE2	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	0.958262911	sgMsh2	cell line
chr5	57721359	57721359	T	C	ENSMUST00000191837.5	1	ENSMUSG00000029108	missense	L/S	752	Pcdh7	ENSMUST00000191837.5:c.2255T>C	ENSMUSP00000142319.1:p.Leu752Ser	H-2-Kb	9	7	5	ISYTSLPPS	ISYTLLPPS	SMM	151.743	109.172	0.719	209	0.196	424.609	273.635	0.644	451.89	632.75	392.3	624.7	109.1716816	151.7434661	154.9708446	224.5173978	M5	-0.428571429	0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.186	209	34	0	0	5qC1	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	0.788658856	sgMsh2	cell line
chr5	31040436	31040436	T	C	ENSMUST00000114668.6	1	ENSMUSG00000006641	missense	I/V	310	Slc5a6	ENSMUST00000114668.6:c.928A>G	ENSMUSP00000110316.1:p.Ile310Val	H-2-Kb	9	11	1	VGLVMFAYY	IGLVMFAYY	SMM	176.242	259.484	1.472	70	0.157	453.049	578.617	1.277	846.6	671.54	1237.9	1273.8	259.483651	176.2422384	310.6347231	234.557865	M5	1.7	2.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.159	70	5	0	0	5qB1	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	0.674176119	sgMsh2	cell line
chr6	57600007	57600007	T	C	ENSMUST00000031817.9	1	ENSMUSG00000029798	missense	L/P	235	Herc6	ENSMUST00000031817.9:c.704T>C	ENSMUSP00000031817.8:p.Leu235Pro	H-2-Db	9	6	6	GALKNPSVI	GALKNLSVI	NetMHC	13.46	7.99	0.594	146	0.192	47.099	27.26	0.579	7.99	13.46	16.8	37.5	48.2636319	70.24574131	37.71985373	56.6982951	M5	0.385714286	0.385714286	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.175	146	9	5	0.555555556	6qB3	chr6-56956255-70704451	5	4	1	0.99	4.197700362	NA	1	0.742017741	sgMsh2	cell line
chr6	42286884	42286884	TG	T	ENSMUST00000031894.12	1	ENSMUSG00000029862	FS	G/X	40	Clcn1	ENSMUST00000031894.12:c.122del	ENSMUSP00000031894.6:p.Gly41AlafsTer70	H-2-Db	9	65	0	TTILNVKTV	NA	NetMHCpan	370.5	NA	NA	73	0.123	457.664	NA	NA	NA	742.55	NA	370.5	NA	495.0168702	NA	420.3102682	M5	1.228571429	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.138	73	0	0	NA	6qB2.1	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.58513399	sgMsh2	cell line
chr6	13193189	13193189	T	C	ENSMUST00000054530.6	1	ENSMUSG00000079679	missense	T/A	384	Vwde	ENSMUST00000054530.6:c.1150A>G	ENSMUSP00000058110.5:p.Thr384Ala	H-2-Kb	8	6	6	AVLYYAAV	AVLYYTAV	NetMHC	18.5	70.64	3.818	135	0.193	51.667	133.063	2.575	70.64	18.5	72.6	37	198.0341096	69.30107956	193.5263029	66.33458249	M5	1.885714286	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.207	135	0	0	NA	6qA1	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.877700985	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	8	4	8	VLVSYTRL	VLVSYTRI	NetMHC	19.39	171.38	8.839	175	0.154	31.763	209.772	6.604	171.38	19.39	99.5	20.3	348.1288376	53.67103866	248.1646968	43.22549746	M5	0.642857143	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.158	175	0	0	NA	6qB2.1	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.669936017	sgMsh2	cell line
chr6	69764667	69764667	A	G	ENSMUST00000103365.2	NA	ENSMUSG00000076564	missense	V/A	68	Igkv12-46	ENSMUST00000103365.2:c.203T>C	ENSMUSP00000100166.1:p.Val68Ala	H-2-Kb	8	10	2	LAYAATNL	LVYAATNL	NetMHC	23.51	26.96	1.147	305	0.18	54.108	53.293	0.985	26.96	23.51	27.2	30.1	79.38528349	78.11600059	82.93541077	89.68916897	M5	0.528571429	0.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.189	305	0	0	NA	6qC1	chr6-56956255-70704451	5	4	1	0.99	4.197700362	NA	1	0.80137916	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	8	6	6	VSYTRLLV	VSYTRILV	NetMHCpan	35.2	39.9	1.134	175	0.154	94.957	84.621	0.891	32.04	39.69	39.9	35.2	129.3421274	150.2242346	135.1263357	158.7596015	M5	0.642857143	0.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.158	175	0	0	NA	6qB2.1	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.669936017	sgMsh2	cell line
chr6	46988685	46988685	T	C	ENSMUST00000114641.7	1	ENSMUSG00000039419	missense	L/P	810	Cntnap2	ENSMUST00000114641.7:c.2429T>C	ENSMUSP00000110288.1:p.Leu810Pro	H-2-Kb	8	8	4	SSYPHFST	SSYLHFST	NetMHCpan	86.9	51.5	0.593	211	0.185	228.224	89.241	0.391	48.52	164.88	51.5	86.9	155.8619122	296.9887511	126.9813676	291.5680954	M5	-0.8	-0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.184	211	0	0	NA	6qB2.3	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.780178653	sgMsh2	cell line
chr6	35270381	35270381	A	G	ENSMUST00000031868.4	1	ENSMUSG00000029843	missense	I/T	568	Slc13a4	ENSMUST00000031868.4:c.1703T>C	ENSMUSP00000031868.4:p.Ile568Thr	H-2-Kb	8	11	1	TVFSYGHC	IVFSYGHC	SMMPMBEC	126.398	45.787	0.362	164	0.14	145.752	48.403	0.332	38.66	171.24	51.8	148.7	51.01994663	142.8038776	45.7867692	126.3979412	M5	0.542857143	0.542857143	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.152	164	0	0	NA	6qB1	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.644495409	sgMsh2	cell line
chr6	30815960	30815960	A	G	ENSMUST00000048774.12	1	ENSMUSG00000025607	missense	V/A	480	Copg2	ENSMUST00000048774.12:c.1439T>C	ENSMUSP00000038368.6:p.Val480Ala	H-2-Kb	8	6	6	FIFNRAVL	FIFNRVVL	SMM	138.912	401.55	2.891	135	0.178	159.887	404.813	2.532	524.31	178.28	359.2	181.6	401.5503419	138.9120754	408.0750101	141.4946437	M5	1.3	1.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.179	135	88	12	0.136363636	6qA3.3	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.758978146	sgMsh2	cell line
chr6	42286884	42286884	TG	T	ENSMUST00000031894.12	1	ENSMUSG00000029862	FS	G/X	40	Clcn1	ENSMUST00000031894.12:c.122del	ENSMUSP00000031894.6:p.Gly41AlafsTer70	H-2-Kb	8	28	0	TQHRYMAI	NA	NetMHC	259.42	NA	NA	73	0.123	338.138	NA	NA	NA	259.42	NA	273.8	NA	443.3431473	NA	402.476011	M5	-0.614285714	-0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.138	73	0	0	NA	6qB2.1	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.58513399	sgMsh2	cell line
chr6	18405230	18405230	T	C	ENSMUST00000090601.11	1	ENSMUSG00000000416	missense	Y/C	1090	Cttnbp2	ENSMUST00000090601.11:c.3269A>G	ENSMUSP00000088089.5:p.Tyr1090Cys	H-2-Kb	8	7	5	SSVTCASM	SSVTYASM	NetMHC	276.55	6.31	0.023	319	0.204	362.299	24.523	0.068	6.31	276.55	15.8	475.5	35.70590129	399.7053856	33.24604589	324.8927349	M5	1.157142857	1.157142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.193	319	4	0	0	6qA2	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.818339565	sgMsh2	cell line
chr6	69283934	69283934	TA	T	ENSMUST00000103349.1	NA	ENSMUSG00000076548	FS	Y/X	70	Igkv4-69	ENSMUST00000103349.1:c.208del	ENSMUSP00000100150.1:p.Tyr70MetfsTer26	H-2-Kb	8	25	0	VAVGLGPL	NA	NetMHC	277.12	NA	NA	435	0.186	319.498	NA	NA	NA	277.12	NA	307.3	NA	344.9371732	NA	331.6958211	M5	1.6	1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1862	435	0	0	NA	6qC1	chr6-56956255-70704451	5	4	1	0.99	4.197700362	NA	1	0.789506876	sgMsh2	cell line
chr5	143373198	143373198	CA	C	ENSMUST00000110733.8	1	ENSMUSG00000010825	FS	A/X	252	Grid2ip	ENSMUST00000110733.8:c.757del	ENSMUSP00000106361.2:p.Thr253ProfsTer66	H-2-Kb	8	51	0	LSCLAARL	NA	SMMPMBEC	117.69	NA	NA	39	0.128	231.458	NA	NA	NA	310.25	NA	703.1	NA	152.6651821	NA	117.6901185	M5	1.2	1.2	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.149	39	0	0	NA	5qG2	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	0.631775105	sgMsh2	cell line
chr5	143373198	143373198	CA	C	ENSMUST00000110733.8	1	ENSMUSG00000010825	FS	A/X	252	Grid2ip	ENSMUST00000110733.8:c.757del	ENSMUSP00000106361.2:p.Thr253ProfsTer66	H-2-Kb	8	17	0	VALALGVL	NA	SMM	226.851	NA	NA	39	0.128	270.856	NA	NA	NA	422.56	NA	272.1	NA	226.8506354	NA	269.6124854	M5	2.685714286	2.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.149	39	0	0	NA	5qG2	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	0.631775105	sgMsh2	cell line
chr6	38395159	38395159	A	G	ENSMUST00000162554.7	1	ENSMUSG00000056832	missense	N/S	228	Ttc26	ENSMUST00000162554.7:c.683A>G	ENSMUSP00000124369.1:p.Asn228Ser	H-2-Kb	8	8	4	KACSHFRL	KACNHFRL	SMMPMBEC	238.089	262.869	1.104	199	0.09	424.535	436.945	1.029	611.02	603.18	792.8	636.8	253.9451951	245.8895091	262.8693795	238.0893668	M5	0.342857143	0.342857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.098	199	11	0	0	6qB1	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.415529935	sgMsh2	cell line
chr6	30815960	30815960	A	G	ENSMUST00000048774.12	1	ENSMUSG00000025607	missense	V/A	480	Copg2	ENSMUST00000048774.12:c.1439T>C	ENSMUSP00000038368.6:p.Val480Ala	H-2-Kb	8	4	8	IRFIFNRA	IRFIFNRV	SMMPMBEC	232.135	48.277	0.208	135	0.178	482.306	47.673	0.099	40.71	683.59	149.1	1240.7	47.06954498	281.0217928	48.27696948	232.1346655	M5	-0.085714286	0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.179	135	88	12	0.136363636	6qA3.3	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.758978146	sgMsh2	cell line
chr6	46988685	46988685	T	C	ENSMUST00000114641.7	1	ENSMUSG00000039419	missense	L/P	810	Cntnap2	ENSMUST00000114641.7:c.2429T>C	ENSMUSP00000110288.1:p.Leu810Pro	H-2-Kb	9	8	4	SSYPHFSTF	SSYLHFSTF	NetMHCpan	7.9	6.6	0.835	211	0.185	17.262	10.622	0.615	8.21	12.59	6.6	7.9	13.03496892	21.93360409	17.14944225	28.13519957	M5	-0.285714286	-0.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.184	211	0	0	NA	6qB2.3	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.780178653	sgMsh2	cell line
chr6	13193189	13193189	T	C	ENSMUST00000054530.6	1	ENSMUSG00000079679	missense	T/A	384	Vwde	ENSMUST00000054530.6:c.1150A>G	ENSMUSP00000058110.5:p.Thr384Ala	H-2-Kb	9	5	7	QAVLYYAAV	QAVLYYTAV	NetMHC	15.98	41.44	2.593	135	0.193	75.31	108.396	1.439	41.44	15.98	80.3	48.5	136.4928808	102.1198104	174.2809827	128.0117987	M5	1.885714286	1.885714286	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.207	135	0	0	NA	6qA1	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.877700985	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	9	3	9	LVLVSYTRL	LVLVSYTRI	NetMHC	46.33	202.94	4.38	175	0.154	99.281	285.444	2.875	202.94	46.33	207.6	48.9	371.6293451	149.6614677	363.2871195	157.1267038	M5	0.642857143	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.158	175	0	0	NA	6qB2.1	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.669936017	sgMsh2	cell line
chr6	41394716	41394716	A	G	ENSMUST00000049079.8	1	ENSMUSG00000058119	missense	N/S	32	Gm5771	ENSMUST00000049079.8:c.95A>G	ENSMUSP00000039684.7:p.Asn32Ser	H-2-Kb	9	11	1	SSVPYQVSL	NSVPYQVSL	NetMHCpan	55	427.2	7.767	459	0.176	192.657	1089.876	5.657	863.77	57.03	427.2	55	1486.312054	344.4371603	1315.982154	328.2842143	M5	0.714285714	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.178	459	0	0	NA	6qB1	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.754738045	sgMsh2	cell line
chr5	145986842	145986842	GT	G	ENSMUST00000068317.12	1	ENSMUSG00000029630	FS	K/X	330	Cyp3a25	ENSMUST00000068317.12:c.990del	ENSMUSP00000065585.6:p.Lys330AsnfsTer21	H-2-Kb	9	8	4	VQKNFRMRL	NA	NetMHC	89.9	NA	NA	187	0.246	315.881	NA	NA	NA	89.9	NA	199	NA	496.7181164	NA	432.7628777	M5	-1.128571429	-0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.235	187	0	0	NA	5qG2	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	0.996423823	sgMsh2	cell line
chr6	48044616	48044616	G	A	ENSMUST00000114583.7	5	ENSMUSG00000071477	missense	P/L	68	Zfp777	ENSMUST00000114583.7:c.203C>T	ENSMUSP00000110230.1:p.Pro68Leu	H-2-Kb	9	6	6	SVRQALARL	SVRQAPARL	NetMHC	183.35	942.96	5.143	190	0.158	430.916	1431.822	3.323	942.96	183.35	1791.7	342.9	1222.109162	518.9314595	1641.534444	687.4640623	M5	-0.185714286	0.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.173	190	41	6	0.146341463	6qB2.3	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.733537538	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	9	4	8	VLVSYTRLL	VLVSYTRIL	NetMHCpan	118.1	254.3	2.153	175	0.154	338.726	712.479	2.103	683.46	204.18	254.3	118.1	741.4980274	473.271116	959.9530659	622.6586131	M5	0.642857143	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.158	175	0	0	NA	6qB2.1	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.669936017	sgMsh2	cell line
chr5	137758482	137758482	TG	T	ENSMUST00000110985.1	2	ENSMUSG00000029723	FS	L/X	57	Tsc22d4	ENSMUST00000110985.1:c.177del	ENSMUSP00000106613.1:p.Pro60GlnfsTer18	H-2-Kb	9	22	0	VGWTKAFSL	NA	NetMHCpan	103.3	NA	NA	72	0.556	321.493	NA	NA	NA	216.16	NA	103.3	NA	472.1826226	NA	426.8251484	M5	0.3	0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.538	72	0	0	NA	5qG2	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	2	1	sgMsh2	cell line
chr6	57258876	57258876	T	C	ENSMUST00000228297.1	NA	ENSMUSG00000115199	missense	V/A	243	Vmn1r15	ENSMUST00000228297.1:c.728T>C	ENSMUSP00000154252.1:p.Val243Ala	H-2-Kb	9	5	7	FVVMYWADF	FVVMYWVDF	NetMHC	306.14	761.72	2.488	300	0.14	379.005	706.007	1.863	761.72	306.14	3331.3	836.6	650.2943789	450.9309038	416.1500968	307.0789168	M5	0.714285714	1.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.141	300	0	0	NA	6qB3	chr6-56956255-70704451	5	4	1	0.99	4.197700362	NA	1	0.597854294	sgMsh2	cell line
chr5	147315169	147315169	T	C	ENSMUST00000100433.4	1	ENSMUSG00000075543	missense	S/G	158	Urad	ENSMUST00000100433.4:c.472A>G	ENSMUSP00000098000.3:p.Ser158Gly	H-2-Kb	9	10	2	IGHLRLTDL	ISHLRLTDL	NetMHC	322.75	98.24	0.304	86	0.151	388.562	137.299	0.353	98.24	322.75	151.5	451.1	159.261206	457.2039776	123.0977174	326.0243217	M5	-0.071428571	0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.167	86	0	0	NA	5qG3	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	0.70809693	sgMsh2	cell line
chr6	42286884	42286884	TG	T	ENSMUST00000031894.12	1	ENSMUSG00000029862	FS	G/X	40	Clcn1	ENSMUST00000031894.12:c.122del	ENSMUSP00000031894.6:p.Gly41AlafsTer70	H-2-Kb	9	60	0	TAWMRTTIL	NA	NetMHCpan	157.5	NA	NA	73	0.123	221.615	NA	NA	NA	328.86	NA	157.5	NA	251.2522734	NA	191.9773533	M5	0.485714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.138	73	0	0	NA	6qB2.1	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.58513399	sgMsh2	cell line
chr5	138163817	138163817	T	C	ENSMUST00000019638.14	1	ENSMUSG00000019494	missense	F/L	306	Cops6	ENSMUST00000019638.14:c.916T>C	ENSMUSP00000019638.8:p.Phe306Leu	H-2-Kb	9	3	9	TMNQFVNKL	TMNQFVNKF	NetMHCpan	247.8	1202.9	4.854	135	0.2	353.705	942.706	2.665	1285.45	369.15	1202.9	247.8	682.5115418	404.6783774	585.1268133	338.259498	M5	-0.514285714	-0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.199	135	285	63	0.221052632	5qG2	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	0.843780174	sgMsh2	cell line
chr6	57258876	57258876	T	C	ENSMUST00000228297.1	NA	ENSMUSG00000115199	missense	V/A	243	Vmn1r15	ENSMUST00000228297.1:c.728T>C	ENSMUSP00000154252.1:p.Val243Ala	H-2-Kb	9	7	5	VMYWADFII	VMYWVDFII	SMM	154.565	218.328	1.413	300	0.14	312.379	430.03	1.377	602.28	395.01	1029	537.3	218.3282833	154.5645878	257.7804634	229.7470798	M5	1.128571429	1.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.141	300	0	0	NA	6qB3	chr6-56956255-70704451	5	4	1	0.99	4.197700362	NA	1	0.597854294	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	9	6	6	VSYTRLLVA	VSYTRILVA	NetMHCpan	129.9	163.6	1.259	175	0.154	176.155	270.535	1.536	712.71	415.25	163.6	129.9	323.6756285	203.287184	217.3952246	149.021867	M5	1.014285714	1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.158	175	0	0	NA	6qB2.1	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.669936017	sgMsh2	cell line
chr6	15403822	15403822	CT	C	ENSMUST00000115477.7	1	ENSMUSG00000029563	FS	L/X	366	Foxp2	ENSMUST00000115477.7:c.1098del	ENSMUSP00000111137.1:p.Asn367ThrfsTer24	H-2-Kb	9	14	0	SMHWMTEAL	NA	SMM	342.855	NA	NA	218	0.156	450.119	NA	NA	NA	463.47	NA	482.4	NA	342.8546153	NA	436.7671833	M5	-0.114285714	-0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.163	218	0	0	NA	6qA1	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.691136524	sgMsh2	cell line
chr6	107567567	107567567	A	G	ENSMUST00000049285.9	1	ENSMUSG00000034648	missense	N/D	109	Lrrn1	ENSMUST00000049285.9:c.325A>G	ENSMUSP00000037096.8:p.Asn109Asp	H-2-Db	9	4	8	FSQNNFTDI	FSQNNFTNI	NetMHC	98.08	74.23	0.757	219	0.169	115.299	90.521	0.785	74.23	98.08	73.3	114.3	106.8119884	136.3389673	112.3492041	116.2973985	M5	-1.057142857	-0.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.185	219	2	0	0	6qE1	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.784418754	sgMsh2	cell line
chr6	132737416	132737416	C	T	ENSMUST00000095394.3	NA	ENSMUSG00000071149	missense	G/S	191	Tas2r115	ENSMUST00000095394.3:c.571G>A	ENSMUSP00000093043.2:p.Gly191Ser	H-2-Db	9	10	2	FSVSLIAFL	FGVSLIAFL	NetMHC	146.19	426.79	2.919	220	0.136	287.49	902.345	3.139	426.79	146.19	1037.1	472.3	934.5875687	284.1973343	870.1016656	290.783661	M5	2.871428571	2.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.142	220	0	0	NA	6qG1	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.602094395	sgMsh2	cell line
chr6	102165349	102165349	A	G	ENSMUST00000203619.2	1	ENSMUSG00000030075	missense	L/P	1019	Cntn3	ENSMUST00000203619.2:c.3056T>C	ENSMUSP00000145176.1:p.Leu1019Pro	H-2-Kb	8	6	7	SGYMSVPL	SGYMSVLL	NetMHC	12.64	35.42	2.802	269	0.141	39.225	92.197	2.35	35.42	12.64	42.9	26	141.4946437	53.42444264	144.4574685	52.44933667	M5	0.828571429	0.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.15	269	0	0	NA	6qD3	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.636015206	sgMsh2	cell line
chr6	134451069	134451069	T	C	ENSMUST00000032322.14	1	ENSMUSG00000030201	missense	Y/C	1520	Lrp6	ENSMUST00000032322.14:c.4559A>G	ENSMUSP00000032322.8:p.Tyr1520Cys	H-2-Kb	8	4	8	RSYSYRPC	RSYSYRPY	NetMHC	22.95	107.06	4.665	86	0.151	38.31	109.727	2.864	107.06	22.95	418.8	63.3	112.3931906	35.05419514	72.90209351	41.56616909	M5	-1.114285714	-1.114285714	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.169	86	96	11	0.114583333	6qG1	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.716577132	sgMsh2	cell line
chr6	114302629	114302629	A	G	ENSMUST00000032454.7	1	ENSMUSG00000030310	missense	K/R	123	Slc6a1	ENSMUST00000032454.7:c.368A>G	ENSMUSP00000032454.5:p.Lys123Arg	H-2-Kb	8	6	6	LAPMFRGV	LAPMFKGV	NetMHC	85.05	307.58	3.616	149	0.134	326.028	633.35	1.943	307.58	85.05	408.2	184.6	1126.522836	545.4312289	858.499408	467.4552051	M5	0.6	0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.145	149	0	0	NA	6qE3	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.614814699	sgMsh2	cell line
chr6	124908510	124908510	CG	C	ENSMUST00000032217.1	1	ENSMUSG00000030124	FS	P/X	302	Lag3	ENSMUST00000032217.1:c.906del	ENSMUSP00000032217.1:p.Val303TrpfsTer45	H-2-Kb	8	16	0	VAILPFTL	NA	NetMHC	108.05	NA	NA	90	0.133	209.178	NA	NA	NA	108.05	NA	108.8	NA	309.5565516	NA	376.4783444	M5	2.057142857	2.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.158	90	0	0	NA	6qF2	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.669936017	sgMsh2	cell line
chr6	134451076	134451076	T	C	ENSMUST00000032322.14	1	ENSMUSG00000030201	missense	R/G	1518	Lrp6	ENSMUST00000032322.14:c.4552A>G	ENSMUSP00000032322.8:p.Arg1518Gly	H-2-Kb	8	6	6	RSYSYGPY	RSYSYRPY	SMMPMBEC	72.902	72.902	1	83	0.157	122.156	109.727	0.898	107.06	123.88	418.8	436.7	112.3931906	120.4314735	72.90209351	72.90209351	M5	-1.071428571	-1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.176	83	95	10	0.105263158	6qG1	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.746257842	sgMsh2	cell line
chr6	134451069	134451069	T	C	ENSMUST00000032322.14	1	ENSMUSG00000030201	missense	Y/C	1520	Lrp6	ENSMUST00000032322.14:c.4559A>G	ENSMUSP00000032322.8:p.Tyr1520Cys	H-2-Kb	8	11	1	CSYRHFAP	YSYRHFAP	NetMHC	134.9	77.72	0.576	86	0.151	195.012	134.543	0.69	77.72	134.9	80.4	161.6	188.68614	228.4230889	247.5939338	382.5956254	M5	-0.971428571	-0.385714286	TRUE	FALSE	TRUE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.169	86	96	11	0.114583333	6qG1	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.716577132	sgMsh2	cell line
chr6	116702006	116702006	GC	G	ENSMUST00000056623.12	1	ENSMUSG00000048108	FS	G/X	36	Tmem72	ENSMUST00000056623.12:c.108del	ENSMUSP00000057942.6:p.Arg37GlyfsTer77	H-2-Kb	8	80	0	STLSWSGM	NA	NetMHC	165.56	NA	NA	68	0.162	251.323	NA	NA	NA	165.56	NA	224.2	NA	308.8445912	NA	278.4453695	M5	0.3	0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.179	68	0	0	NA	6qE3	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.758978146	sgMsh2	cell line
chr6	102165349	102165349	A	G	ENSMUST00000203619.2	1	ENSMUSG00000030075	missense	L/P	1019	Cntn3	ENSMUST00000203619.2:c.3056T>C	ENSMUSP00000145176.1:p.Leu1019Pro	H-2-Kb	8	10	3	SVPLFFIV	SVLLFFIV	NetMHC	165.71	136.51	0.824	269	0.141	287.957	185.213	0.643	136.51	165.71	344.1	182.6	167.7799266	393.3145385	202.6469166	520.8827797	M5	2.957142857	2.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.15	269	0	0	NA	6qD3	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.636015206	sgMsh2	cell line
chr6	123815817	123815817	T	C	ENSMUST00000075095.6	5	ENSMUSG00000072780	missense	M/T	701	Vmn2r24	ENSMUST00000075095.6:c.2102T>C	ENSMUSP00000074602.5:p.Met701Thr	H-2-Kb	8	6	6	QMWMVTRL	QMWMVMRL	NetMHC	249.67	165.69	0.664	563	0.176	456.149	439.641	0.964	165.69	249.67	358.4	310.1	520.8827797	666.4076901	533.0156983	602.1989584	M5	0.814285714	0.814285714	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.177	563	0	0	NA	6qF2	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.750497943	sgMsh2	cell line
chr6	125980155	125980155	A	G	ENSMUST00000160496.7	1	ENSMUSG00000038115	missense	K/R	629	Ano2	ENSMUST00000160496.7:c.1886A>G	ENSMUSP00000125303.1:p.Lys629Arg	H-2-Kb	8	6	6	KAFLLRFV	KAFLLKFV	NetMHCpan	272.4	547.6	2.01	298	0.158	351.17	682.716	1.944	1229.78	480.77	547.6	272.4	681.9303192	330.1718172	683.502331	372.1688324	M5	2.1	2.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.151	298	0	0	NA	6qF3	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.640255308	sgMsh2	cell line
chr6	123786737	123786737	C	T	ENSMUST00000075095.6	5	ENSMUSG00000072780	missense	P/L	191	Vmn2r24	ENSMUST00000075095.6:c.572C>T	ENSMUSP00000074602.5:p.Pro191Leu	H-2-Kb	8	4	8	TSVQLQSL	TSVQLQSP	SMM	371.313	8989.592	24.21	440	0.145	474.886	16488.746	34.721	30943.58	569.81	23120.6	613.2	8989.592386	371.3128679	9856.892043	379.9618556	M5	0.457142857	0.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.152	440	0	0	NA	6qF2	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.644495409	sgMsh2	cell line
chr6	85808552	85808552	G	T	ENSMUST00000174143.1	3	ENSMUSG00000079495	missense	S/Y	205	Nat8f6	ENSMUST00000174143.1:c.614C>A	ENSMUSP00000133846.1:p.Ser205Tyr	H-2-Kb	8	7	5	YTYLYRLR	YTYLSRLR	SMM	195.317	3025.102	15.488	162	0.111	483.949	7510.367	15.519	12503.92	670.91	9775.8	1412.4	3025.101842	195.3169797	5244.933667	296.9887511	M5	-0.671428571	-0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.101	162	0	0	NA	6qC3	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.428250239	sgMsh2	cell line
chr6	124908510	124908510	CG	C	ENSMUST00000032217.1	1	ENSMUSG00000030124	FS	P/X	302	Lag3	ENSMUST00000032217.1:c.906del	ENSMUSP00000032217.1:p.Val303TrpfsTer45	H-2-Kb	8	24	0	RLWVWHRL	NA	SMMPMBEC	207.367	NA	NA	90	0.133	336.204	NA	NA	NA	1111.14	NA	304.5	NA	367.908651	NA	207.3671696	M5	0.328571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.158	90	0	0	NA	6qF2	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.669936017	sgMsh2	cell line
chr6	85808552	85808552	G	T	ENSMUST00000174143.1	3	ENSMUSG00000079495	missense	S/Y	205	Nat8f6	ENSMUST00000174143.1:c.614C>A	ENSMUSP00000133846.1:p.Ser205Tyr	H-2-Kb	9	5	7	TFYTYLYRL	TFYTYLSRL	NetMHCpan	18.5	10.9	0.589	162	0.111	36.103	23.831	0.66	14.91	27.63	10.9	18.5	33.65968133	44.57691405	32.75291816	47.34237051	M5	-0.214285714	0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.101	162	0	0	NA	6qC3	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.428250239	sgMsh2	cell line
chr6	131689760	131689760	T	C	ENSMUST00000080619.2	NA	ENSMUSG00000063478	missense	S/G	102	Tas2r114	ENSMUST00000080619.2:c.304A>G	ENSMUSP00000079453.2:p.Ser102Gly	H-2-Kb	9	4	8	LNVWFATGL	LNVWFATSL	NetMHCpan	26.7	27.4	1.026	253	0.146	169.649	197.812	1.166	62.88	42.74	27.4	26.7	332.7438214	296.558243	351.7628732	346.1385739	M5	1.514285714	1.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.138	253	0	0	NA	6qF3	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.58513399	sgMsh2	cell line
chr6	134520435	134520435	A	C	ENSMUST00000032322.14	1	ENSMUSG00000030201	missense	L/R	203	Lrp6	ENSMUST00000032322.14:c.608T>G	ENSMUSP00000032322.8:p.Leu203Arg	H-2-Kb	9	11	1	RNFIHKSNL	LNFIHKSNL	NetMHCpan	24.8	15.1	0.609	173	0.15	96.035	60.832	0.633	39.77	43.78	15.1	24.8	87.5205423	148.2893631	81.893607	152.4930322	M5	-0.042857143	-0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.166	173	94	15	0.159574468	6qG1	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.703856828	sgMsh2	cell line
chr6	124908510	124908510	CG	C	ENSMUST00000032217.1	1	ENSMUSG00000030124	FS	P/X	302	Lag3	ENSMUST00000032217.1:c.906del	ENSMUSP00000032217.1:p.Val303TrpfsTer45	H-2-Kb	9	17	0	AILPFTLRL	NA	NetMHCpan	45.3	NA	NA	90	0.133	185.425	NA	NA	NA	88.29	NA	45.3	NA	282.5595563	NA	326.7758854	M5	1.057142857	2.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.158	90	0	0	NA	6qF2	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.669936017	sgMsh2	cell line
chr6	134451069	134451069	T	C	ENSMUST00000032322.14	1	ENSMUSG00000030201	missense	Y/C	1520	Lrp6	ENSMUST00000032322.14:c.4559A>G	ENSMUSP00000032322.8:p.Tyr1520Cys	H-2-Kb	9	11	1	CSYRHFAPP	YSYRHFAPP	SMM	43.965	47.985	1.091	86	0.151	101.949	75.581	0.741	74.91	111.8	101.8	153.6	47.9854973	43.96529586	76.25178243	92.09795777	M5	-1.085714286	-0.385714286	TRUE	FALSE	TRUE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.169	86	96	11	0.114583333	6qG1	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.716577132	sgMsh2	cell line
chr6	88376284	88376284	T	C	ENSMUST00000165242.3	1	ENSMUSG00000033216	missense	I/M	134	Eefsec	ENSMUST00000165242.3:c.402A>G	ENSMUSP00000131207.1:p.Ile134Met	H-2-Kb	9	6	6	VVLNKMDLL	VVLNKIDLL	NetMHC	194.98	282.9	1.451	177	0.164	240.347	302.184	1.257	282.9	194.98	707	550.8	308.3968972	253.577082	295.9715726	227.1171867	M5	0.342857143	0.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.176	177	65	10	0.153846154	6qD1	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.746257842	sgMsh2	cell line
chr6	114701198	114701198	G	A	ENSMUST00000169310.9	1	ENSMUSG00000030314	missense	G/S	350	Atg7	ENSMUST00000169310.9:c.1048G>A	ENSMUSP00000133215.3:p.Gly350Ser	H-2-Kb	9	11	1	SMGPRMVNL	GMGPRMVNL	SMMPMBEC	209.05	519.099	2.483	337	0.125	229.621	1238.386	5.393	1812.86	224.76	2317.3	239.5	663.9112074	234.4822647	519.0987702	209.0499173	M5	-0.014285714	0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.133	337	90	8	0.088888889	6qE3	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.563933483	sgMsh2	cell line
chr6	108399280	108399280	C	T	ENSMUST00000032192.8	1	ENSMUSG00000030102	missense	R/W	1235	Itpr1	ENSMUST00000032192.8:c.3703C>T	ENSMUSP00000032192.6:p.Arg1235Trp	H-2-Kb	9	9	3	IMWLAHEFL	IMRLAHEFL	NetMHCpan	173.3	364.8	2.105	110	0.118	275.443	622.207	2.259	738.74	227.21	364.8	173.3	566.3827268	323.6756285	678.0317017	326.7758854	M5	0.657142857	0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.113	110	17	0	0	6qE1	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.479131455	sgMsh2	cell line
chr6	108380923	108380923	A	T	ENSMUST00000032192.8	1	ENSMUSG00000030102	missense	K/M	521	Itpr1	ENSMUST00000032192.8:c.1562A>T	ENSMUSP00000032192.6:p.Lys521Met	H-2-Kb	9	9	3	IFMLLQAPF	IFKLLQAPF	NetMHC	243.96	1098.72	4.504	118	0.127	381.453	1088.97	2.855	1098.72	243.96	1897.8	649.4	1079.220037	368.2222268	940.2644145	394.6844353	M5	1.285714286	2.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.117	118	26	2	0.076923077	6qE1	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.496091861	sgMsh2	cell line
chr6	134484391	134484391	T	G	ENSMUST00000032322.14	1	ENSMUSG00000030201	missense	E/A	701	Lrp6	ENSMUST00000032322.14:c.2102A>C	ENSMUSP00000032322.8:p.Glu701Ala	H-2-Kb	9	4	8	SALEHVVAF	SALEHVVEF	NetMHC	346.5	552.55	1.595	215	0.163	444.167	549.223	1.237	552.55	346.5	572.2	399.4	545.8961105	515.3591605	539.8212792	488.9337312	M5	1.442857143	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.162	215	110	17	0.154545455	6qG1	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.686896423	sgMsh2	cell line
chr6	132803231	132803231	A	G	ENSMUST00000068302.3	NA	ENSMUSG00000058349	missense	T/A	111	Tas2r117	ENSMUST00000068302.3:c.331A>G	ENSMUSP00000069768.3:p.Thr111Ala	H-2-Kb	9	10	2	LAVLYFLKI	LTVLYFLKI	NetMHCpan	201.9	258.3	1.279	215	0.149	270.37	362.769	1.342	474.79	365.12	258.3	201.9	437.6329367	317.7678825	287.9055255	222.9718309	M5	1.985714286	2.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.154	215	0	0	NA	6qG1	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.652975612	sgMsh2	cell line
chr6	102165349	102165349	A	G	ENSMUST00000203619.2	1	ENSMUSG00000030075	missense	L/P	1019	Cntn3	ENSMUST00000203619.2:c.3056T>C	ENSMUSP00000145176.1:p.Leu1019Pro	H-2-Kb	9	6	7	SGYMSVPLF	SGYMSVLLF	NetMHCpan	163.2	245.5	1.504	269	0.141	445.705	500.316	1.123	368.06	365.26	245.5	163.2	632.5720517	526.1505152	653.5066331	561.3710342	M5	1.285714286	1.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.15	269	0	0	NA	6qD3	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.636015206	sgMsh2	cell line
chr6	123815817	123815817	T	C	ENSMUST00000075095.6	5	ENSMUSG00000072780	missense	M/T	701	Vmn2r24	ENSMUST00000075095.6:c.2102T>C	ENSMUSP00000074602.5:p.Met701Thr	H-2-Kb	9	8	4	WMVTRLSNV	WMVMRLSNV	SMMPMBEC	371.749	308.496	0.83	563	0.176	393.346	326.071	0.829	273.51	374.49	1055.2	1159.9	343.6449768	412.2019102	308.4963287	371.7491635	M5	0.385714286	0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.177	563	0	0	NA	6qF2	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.750497943	sgMsh2	cell line
chr6	113578387	113578387	T	A	ENSMUST00000036340.11	1	ENSMUSG00000034023	missense	F/Y	1119	Fancd2	ENSMUST00000036340.11:c.3356T>A	ENSMUSP00000045667.5:p.Phe1119Tyr	H-2-Kb	9	3	9	QSFSYLQNY	QSFSYLQNF	SMM	108.67	62.389	0.574	236	0.153	297.381	61.045	0.205	32.08	374.85	59.7	1857.1	62.38928378	108.6700833	111.2371876	219.9125427	M5	-0.542857143	-0.471428571	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.162	236	40	4	0.1	6qE3	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.686896423	sgMsh2	cell line
chr6	132711489	132711489	A	G	ENSMUST00000105077.1	NA	ENSMUSG00000078280	missense	F/S	147	Tas2r122	ENSMUST00000105077.1:c.440T>C	ENSMUSP00000100699.1:p.Phe147Ser	H-2-Kb	9	4	8	YFILFLISM	YFILFLIFM	SMM	276.764	370.775	1.34	213	0.16	446.557	765.882	1.715	1013.86	510.95	6463	3337.4	370.7746213	276.7642557	517.9048762	382.1641989	M5	2.928571429	3.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.157	213	0	0	NA	6qG1	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.665695916	sgMsh2	cell line
chr6	102165349	102165349	A	G	ENSMUST00000203619.2	1	ENSMUSG00000030075	missense	L/P	1019	Cntn3	ENSMUST00000203619.2:c.3056T>C	ENSMUSP00000145176.1:p.Leu1019Pro	H-2-Kb	9	5	8	LSGYMSVPL	LSGYMSVLL	SMM	338.15	430.636	1.274	269	0.141	473.33	733.728	1.55	954.3	578.32	2156.5	1287.4	430.63567	338.1504736	513.1566957	368.3409467	M5	0.828571429	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.15	269	0	0	NA	6qD3	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.636015206	sgMsh2	cell line
chr7	26611187	26611187	T	C	ENSMUST00000228367.1	NA	ENSMUSG00000091924	missense	M/V	298	Vmn1r185	ENSMUST00000228367.1:c.892A>G	ENSMUSP00000154816.1:p.Met298Val	H-2-Db	9	8	4	YSLVSRFNL	YSLMSRFNL	NetMHC	136.82	215.91	1.578	191	0.251	299.155	452.516	1.513	215.91	136.82	303	280.9	602.0325877	317.4095578	657.007005	372.8807814	M5	0.828571429	0.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.255	191	0	0	NA	7qA3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr7	25272796	25272796	A	G	ENSMUST00000169266.7	1	ENSMUSG00000005442	missense	I/V	651	Cic	ENSMUST00000169266.7:c.1951A>G	ENSMUSP00000132351.1:p.Ile651Val	H-2-Db	10	2	10	FSPINASPVV	FSPINASPVI	NetMHC	14.9	8.41	0.564	52	0.192	465.206	229.143	0.493	8.41	14.9	34.4	92.4	423.8869047	838.0115415	542.8376978	1013.141255	M5	1.257142857	1.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.212	52	28	7	0.25	7qA3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.898901492	sgMsh2	cell line
chr7	66784798	66784798	T	C	ENSMUST00000066475.10	1	ENSMUSG00000030510	missense	W/R	216	Cers3	ENSMUST00000066475.10:c.646T>C	ENSMUSP00000069238.8:p.Trp216Arg	H-2-Kb	8	8	4	SQYRYYIL	SQYWYYIL	NetMHC	4.27	6.01	1.407	299	0.164	11.074	15.356	1.387	6.01	4.27	10.4	7.4	20.3114066	14.74823333	31.82291802	20.73671696	M5	-0.514285714	-0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.18	299	0	0	NA	7qC	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.763218248	sgMsh2	cell line
chr7	19643130	19643130	A	C	ENSMUST00000055242.10	1	ENSMUSG00000002981	missense	F/V	170	Clptm1	ENSMUST00000055242.10:c.508T>G	ENSMUSP00000051293.9:p.Phe170Val	H-2-Kb	8	4	8	SIYIHVYV	SIYIHVYF	NetMHC	15.47	62.57	4.045	138	0.246	41.881	121.629	2.904	62.57	15.47	80.8	57.4	162.4575876	35.70590129	166.6249377	48.05515695	M5	1.657142857	1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.262	138	214	65	0.303738318	7qA3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr7	28320255	28320255	A	G	ENSMUST00000209141.1	1	ENSMUSG00000003435	missense	F/L	497	Supt5	ENSMUST00000209141.1:c.1489T>C	ENSMUSP00000147164.1:p.Phe497Leu	H-2-Kb	8	11	1	LVILFSDL	FVILFSDL	NetMHCpan	33.8	63.7	1.885	109	0.239	68.106	75.272	1.105	40.58	34.18	63.7	33.8	93.70008827	130.2386842	86.84403626	102.0328459	M5	2.114285714	2.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.248	109	149	36	0.241610738	7qA3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr7	6461136	6461136	T	C	ENSMUST00000214301.2	5	ENSMUSG00000048620	missense	V/A	209	Olfr1336	ENSMUST00000214301.2:c.626T>C	ENSMUSP00000150162.1:p.Val209Ala	H-2-Kb	8	10	2	IAILWGSL	IVILWGSL	NetMHCpan	26.7	38.1	1.427	270	0.237	48.129	52.985	1.101	49.64	35.34	38.1	26.7	82.36448742	81.04757034	56.33003227	60.91720937	M5	1.685714286	1.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.239	270	0	0	NA	7qA1	chr7-3896664-7472715	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr7	62419972	62419972	TC	T	ENSMUST00000094340.3	NA	ENSMUSG00000070527	FS	E/X	24	Mkrn3	ENSMUST00000094340.3:c.70del	ENSMUSP00000091898.3:p.Glu24ArgfsTer36	H-2-Kb	8	11	1	RVCLFPPL	NA	SMMPMBEC	44.951	NA	NA	25	0.16	58.684	NA	NA	NA	65.4	NA	82.2	NA	51.96847826	NA	44.95106648	M5	1.985714286	1.985714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.199	25	0	0	NA	7qC	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.843780174	sgMsh2	cell line
chr6	141532679	141532679	A	G	ENSMUST00000032362.11	1	ENSMUSG00000030235	missense	K/R	56	Slco1c1	ENSMUST00000032362.11:c.167A>G	ENSMUSP00000032362.9:p.Lys56Arg	H-2-Kb	8	4	8	LSFVYFAR	LSFVYFAK	NetMHC	71.6	273.33	3.817	148	0.128	97.337	165.283	1.698	273.33	71.6	241.7	126.8	88.86689373	86.84403626	56.4598864	107.830098	M5	0.714285714	1.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.132	148	0	0	NA	6qG2	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.559693382	sgMsh2	cell line
chr6	141532679	141532679	A	G	ENSMUST00000032362.11	1	ENSMUSG00000030235	missense	K/R	56	Slco1c1	ENSMUST00000032362.11:c.167A>G	ENSMUSP00000032362.9:p.Lys56Arg	H-2-Kb	8	5	7	SFVYFARA	SFVYFAKA	NetMHC	104.42	421.4	4.036	148	0.128	172.62	538.576	3.12	421.4	104.42	215.7	105.5	804.8964279	281.6696149	655.752568	239.7397234	M5	1.085714286	1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.132	148	0	0	NA	6qG2	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.559693382	sgMsh2	cell line
chr6	141532679	141532679	A	G	ENSMUST00000032362.11	1	ENSMUSG00000030235	missense	K/R	56	Slco1c1	ENSMUST00000032362.11:c.167A>G	ENSMUSP00000032362.9:p.Lys56Arg	H-2-Kb	8	6	6	FVYFARAL	FVYFAKAL	NetMHCpan	53.9	100.9	1.872	148	0.128	100.957	211.274	2.093	281	106.91	100.9	53.9	196.218522	95.00358634	226.3288934	123.2366829	M5	1.228571429	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.132	148	0	0	NA	6qG2	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.559693382	sgMsh2	cell line
chr7	4469203	4469203	GA	G	ENSMUST00000163893.7	1	ENSMUSG00000006154	FS	R/X	22	Eps8l1	ENSMUST00000163893.7:c.69del	ENSMUSP00000125840.1:p.Lys23AsnfsTer56	H-2-Kb	8	6	7	SIYEQRNV	SIYEQRKR	SMM	80.305	2021.808	25.177	208	0.24	140.518	10629.403	75.645	16431.11	121.91	19443.2	292.4	2021.808416	80.30452175	4827.696948	159.1255801	M5	-1.085714286	-1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.247	208	0	0	NA	7qA1	chr7-3896664-7472715	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr7	10715340	10715340	GT	G	ENSMUST00000117413.8	1	ENSMUSG00000034087	FS	V/X	490	Nlrp4b	ENSMUST00000117413.8:c.1475del	ENSMUSP00000113095.1:p.Leu492TrpfsTer29	H-2-Kb	8	11	3	VFWAVSSL	NA	SMM	90.728	NA	NA	82	0.268	123.855	NA	NA	NA	168.69	NA	143.3	NA	90.7277206	NA	104.4094962	M5	1.442857143	1.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.282	82	0	0	NA	7qA1	chr7-7473826-12260948	3	2	1	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr7	30360056	30360056	TC	T	ENSMUST00000046351.6	1	ENSMUSG00000036957	FS	G/X	248	Lrfn3	ENSMUST00000046351.6:c.743del	ENSMUSP00000037616.5:p.Gly248GlufsTer51	H-2-Kb	8	52	0	RSLCVSHL	NA	NetMHC	210.36	NA	NA	47	0.34	246.033	NA	NA	NA	210.36	NA	400	NA	227.3735801	NA	264.691503	M5	1.357142857	1.357142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.31	47	4	0	0	7qB1	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr7	26611187	26611187	T	C	ENSMUST00000228367.1	NA	ENSMUSG00000091924	missense	M/V	298	Vmn1r185	ENSMUST00000228367.1:c.892A>G	ENSMUSP00000154816.1:p.Met298Val	H-2-Kb	8	4	8	FMRSYSLV	FMRSYSLM	NetMHC	238.94	166.52	0.697	191	0.251	450.026	344.108	0.765	166.52	238.94	202.1	466.8	486.1160944	433.2514252	558.1359543	516.1072977	M5	0.357142857	0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.255	191	0	0	NA	7qA3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr7	62419972	62419972	TC	T	ENSMUST00000094340.3	NA	ENSMUSG00000070527	FS	E/X	24	Mkrn3	ENSMUST00000094340.3:c.70del	ENSMUSP00000091898.3:p.Glu24ArgfsTer36	H-2-Kb	8	19	0	LSLRLLEL	NA	NetMHCpan	293.7	NA	NA	25	0.16	477.609	NA	NA	NA	496.72	NA	293.7	NA	496.2951144	NA	458.9231861	M5	0.914285714	0.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.199	25	0	0	NA	7qC	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.843780174	sgMsh2	cell line
chr7	10715340	10715340	GT	G	ENSMUST00000117413.8	1	ENSMUSG00000034087	FS	V/X	490	Nlrp4b	ENSMUST00000117413.8:c.1475del	ENSMUSP00000113095.1:p.Leu492TrpfsTer29	H-2-Kb	8	16	0	SSLVFYMK	NA	SMMPMBEC	146.467	NA	NA	82	0.268	418.089	NA	NA	NA	663.3	NA	1138.5	NA	172.8781076	NA	146.4670721	M5	0.957142857	1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.282	82	0	0	NA	7qA1	chr7-7473826-12260948	3	2	1	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr7	10715340	10715340	GT	G	ENSMUST00000117413.8	1	ENSMUSG00000034087	FS	V/X	490	Nlrp4b	ENSMUST00000117413.8:c.1475del	ENSMUSP00000113095.1:p.Leu492TrpfsTer29	H-2-Kb	8	8	6	KQWVFWAV	KQWVFLGC	SMMPMBEC	237.542	1212.663	5.105	82	0.268	376.978	2692.26	7.142	6182.8	706.08	4011.3	486.2	1373.219621	267.7564861	1212.662646	237.5417764	M5	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.282	82	0	0	NA	7qA1	chr7-7473826-12260948	3	2	1	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr7	13028552	13028552	C	A	ENSMUST00000005705.7	1	ENSMUSG00000005566	missense	L/M	368	Trim28	ENSMUST00000005705.7:c.1102C>A	ENSMUSP00000005705.7:p.Leu368Met	H-2-Kb	8	9	3	KKMIYFQL	KKLIYFQL	SMMPMBEC	242.516	183.967	0.759	99	0.343	424.719	506.319	1.192	828.67	832.15	1033.4	533.4	183.9670312	316.0385059	183.9670312	242.5157786	M5	0.614285714	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.342	99	647	161	0.248840804	7qA1	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	2	1	sgMsh2	cell line
chr6	141532679	141532679	A	G	ENSMUST00000032362.11	1	ENSMUSG00000030235	missense	K/R	56	Slco1c1	ENSMUST00000032362.11:c.167A>G	ENSMUSP00000032362.9:p.Lys56Arg	H-2-Kb	9	4	8	LSFVYFARA	LSFVYFAKA	NetMHC	8.07	18.23	2.259	148	0.128	41.355	63.038	1.524	18.23	8.07	19.6	12.2	162.2220929	88.94263671	106.4755765	70.50988397	M5	1.085714286	1.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.132	148	0	0	NA	6qG2	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.559693382	sgMsh2	cell line
chr7	26611187	26611187	T	C	ENSMUST00000228367.1	NA	ENSMUSG00000091924	missense	M/V	298	Vmn1r185	ENSMUST00000228367.1:c.892A>G	ENSMUSP00000154816.1:p.Met298Val	H-2-Kb	9	11	1	VSRFNLAHL	MSRFNLAHL	NetMHC	34.25	88.62	2.587	191	0.251	91.603	217.283	2.372	88.62	34.25	130.4	64.6	304.1655332	118.6069123	327.5291816	126.5464598	M5	0.142857143	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.255	191	0	0	NA	7qA3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr7	25630422	25630422	G	T	ENSMUST00000205808.1	5	ENSMUSG00000060376	missense	P/H	92	Bckdha	ENSMUST00000205808.1:c.275C>A	ENSMUSP00000146018.1:p.Pro92His	H-2-Kb	9	10	5	RSWKHLSRL	RSWKPLSRL	NetMHCpan	40.3	284.5	7.06	41	0.317	90.509	379.431	4.192	202.73	43.85	284.5	40.3	474.3621186	146.9298381	571.8077009	137.1671136	M5	-0.814285714	-0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.341	41	100	25	0.25	7qA3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	2	1	sgMsh2	cell line
chr7	6461136	6461136	T	C	ENSMUST00000214301.2	5	ENSMUSG00000048620	missense	V/A	209	Olfr1336	ENSMUST00000214301.2:c.626T>C	ENSMUSP00000150162.1:p.Val209Ala	H-2-Kb	9	10	2	IAILWGSLL	IVILWGSLL	NetMHC	79.58	110.35	1.387	270	0.237	134.3	179.951	1.34	110.35	79.58	151.4	83.2	208.5018919	185.4001153	225.0349638	194.6480243	M5	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.239	270	0	0	NA	7qA1	chr7-3896664-7472715	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr7	26611187	26611187	T	C	ENSMUST00000228367.1	NA	ENSMUSG00000091924	missense	M/V	298	Vmn1r185	ENSMUST00000228367.1:c.892A>G	ENSMUSP00000154816.1:p.Met298Val	H-2-Kb	9	3	9	VFMRSYSLV	VFMRSYSLM	NetMHC	86.79	66.95	0.771	191	0.251	195.423	101.978	0.522	66.95	86.79	103.7	265	100.2559138	171.4391481	132.8158787	219.4067579	M5	0.357142857	0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.255	191	0	0	NA	7qA3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr6	141532679	141532679	A	G	ENSMUST00000032362.11	1	ENSMUSG00000030235	missense	K/R	56	Slco1c1	ENSMUST00000032362.11:c.167A>G	ENSMUSP00000032362.9:p.Lys56Arg	H-2-Kb	9	5	7	SFVYFARAL	SFVYFAKAL	NetMHC	90.76	210.98	2.325	148	0.128	303.576	377.92	1.245	210.98	90.76	211.2	119.5	544.6405843	487.6519891	802.1396792	782.0778752	M5	1.228571429	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.132	148	0	0	NA	6qG2	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.559693382	sgMsh2	cell line
chr7	10715340	10715340	GT	G	ENSMUST00000117413.8	1	ENSMUSG00000034087	FS	V/X	490	Nlrp4b	ENSMUST00000117413.8:c.1475del	ENSMUSP00000113095.1:p.Leu492TrpfsTer29	H-2-Kb	9	16	0	SSLVFYMKQ	NA	NetMHC	125.29	NA	NA	82	0.268	140.178	NA	NA	NA	125.29	NA	2072.5	NA	139.9941861	NA	140.3621462	M5	0.571428571	1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.282	82	0	0	NA	7qA1	chr7-7473826-12260948	3	2	1	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr7	26611187	26611187	T	C	ENSMUST00000228367.1	NA	ENSMUSG00000091924	missense	M/V	298	Vmn1r185	ENSMUST00000228367.1:c.892A>G	ENSMUSP00000154816.1:p.Met298Val	H-2-Kb	9	6	6	RSYSLVSRF	RSYSLMSRF	NetMHCpan	141.6	108.4	0.766	191	0.251	189.696	134.173	0.707	111.27	145.45	108.4	141.6	157.0760603	233.9429705	198.2668013	302.8656361	M5	0.485714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.255	191	0	0	NA	7qA3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr7	66784798	66784798	T	C	ENSMUST00000066475.10	1	ENSMUSG00000030510	missense	W/R	216	Cers3	ENSMUST00000066475.10:c.646T>C	ENSMUSP00000069238.8:p.Trp216Arg	H-2-Kb	9	8	4	SQYRYYILE	SQYWYYILE	SMM	92.493	70.325	0.76	299	0.164	160.502	195.895	1.221	314.3	217.43	396.3	364.7	70.32504197	92.49324152	77.49077422	103.5738214	M5	-0.514285714	-0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.18	299	0	0	NA	7qC	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.763218248	sgMsh2	cell line
chr7	44860083	44860083	A	T	ENSMUST00000003044.13	1	ENSMUSG00000002963	missense	I/F	214	Pnkp	ENSMUST00000003044.13:c.640A>T	ENSMUSP00000003044.7:p.Ile214Phe	H-2-Kb	9	10	2	VFFTNQMGI	VIFTNQMGI	NetMHC	224.67	173.98	0.774	129	0.225	495.62	287.013	0.579	173.98	224.67	171	466.3	400.0460623	524.9404026	441.8247089	598.7561676	M5	0.157142857	0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.257	129	91	16	0.175824176	7qB3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr7	10715340	10715340	GT	G	ENSMUST00000117413.8	1	ENSMUSG00000034087	FS	V/X	490	Nlrp4b	ENSMUST00000117413.8:c.1475del	ENSMUSP00000113095.1:p.Leu492TrpfsTer29	H-2-Kb	9	10	4	WVFWAVSSL	NA	NetMHCpan	310.4	NA	NA	82	0.268	472.568	NA	NA	NA	324.11	NA	310.4	NA	621.0263106	NA	638.631006	M5	1.442857143	1.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.282	82	0	0	NA	7qA1	chr7-7473826-12260948	3	2	1	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr7	6996630	6996630	G	T	ENSMUST00000086248.6	1	ENSMUSG00000070837	missense	K/N	84	Aurkc	ENSMUST00000086248.6:c.252G>T	ENSMUSP00000083426.5:p.Lys84Asn	H-2-Kb	9	10	2	LNVLFKSEI	LKVLFKSEI	NetMHCpan	277.1	6430	23.205	135	0.378	444.923	3344.176	7.516	3855.33	333.8	6430	277.1	2612.823058	556.045077	2833.022345	641.5787927	M5	1.014285714	1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.364	135	0	0	NA	7qA1	chr7-3896664-7472715	4	2	2	0.99	4.197700362	NA	2	1	sgMsh2	cell line
chr7	55933103	55933103	G	A	ENSMUST00000119201.7	1	ENSMUSG00000030452	missense	A/V	298	Nipa2	ENSMUST00000119201.7:c.893C>T	ENSMUSP00000114020.1:p.Ala298Val	H-2-Kb	9	3	9	IVGIFLLHV	IVGIFLLHA	SMMPMBEC	293.934	1014.495	3.451	168	0.232	319.481	1799.346	5.632	2393.35	336.89	4122.3	831.1	1205.341196	302.0716724	1014.495208	293.9341186	M5	2.214285714	3.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	168	100	20	0.2	7qB5	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.958262911	sgMsh2	cell line
chr7	45897436	45897436	C	T	ENSMUST00000069772.15	1	ENSMUSG00000002781	missense	L/F	9	Tmem143	ENSMUST00000069772.15:c.25C>T	ENSMUSP00000070405.7:p.Leu9Phe	H-2-Kb	9	1	9	MTVARWLRF	MTVARWLRL	SMMPMBEC	346.937	200.563	0.578	43	0.186	447.198	172.436	0.386	144.31	476.98	90.6	447.6	264.9171047	446.7967444	200.5626226	346.9365057	M5	0.385714286	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.221	43	19	4	0.210526316	7qB3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.937062404	sgMsh2	cell line
chr8	13576361	13576361	T	C	ENSMUST00000117551.3	1	ENSMUSG00000031453	missense	M/V	741	Rasa3	ENSMUST00000117551.3:c.2221A>G	ENSMUSP00000112998.2:p.Met741Val	H-2-Db	9	4	8	YSLFNLYVG	YSLFNLYMG	NetMHC	87.93	363.82	4.138	133	0.286	182.548	418.279	2.291	363.82	87.93	556	201.2	472.737441	298.2771604	313.0184957	163.896621	M5	1.342857143	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.288	133	73	19	0.260273973	8qA1.1	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr7	108845947	108845947	G	T	ENSMUST00000216092.1	5	ENSMUSG00000062434	missense	P/H	21	Olfr516	ENSMUST00000216092.1:c.62C>A	ENSMUSP00000149160.1:p.Pro21His	H-2-Db	9	5	7	LGFSNYHEL	LGFSNYPEL	NetMHCpan	50.7	117	2.308	186	0.274	175.701	268.441	1.528	393.62	116.13	117	50.7	288.8151695	242.4487783	248.0675743	235.2718676	M5	-0.814285714	-0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.286	186	0	0	NA	7qE3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr7	81101095	81101095	T	C	ENSMUST00000107348.1	1	ENSMUSG00000038763	missense	W/R	1538	Alpk3	ENSMUST00000107348.1:c.4612T>C	ENSMUSP00000102971.1:p.Trp1538Arg	H-2-Db	9	9	3	YQRTNGSFL	YQWTNGSFL	NetMHCpan	123.2	26.5	0.215	65	0.2	312.704	56.356	0.18	8.22	131.53	26.5	123.2	91.33137583	493.878363	86.21245256	572.2291797	M5	-0.471428571	-0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.21	65	0	0	NA	7qD3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.890421289	sgMsh2	cell line
chr7	99667112	99667112	T	C	ENSMUST00000107088.7	1	ENSMUSG00000030737	missense	T/A	404	Slco2b1	ENSMUST00000107088.7:c.1210A>G	ENSMUSP00000102703.1:p.Thr404Ala	H-2-Kb	8	10	2	IAASFANM	ITASFANM	NetMHC	5.86	5.92	1.01	83	0.217	17.404	13.8	0.793	5.92	5.86	10.9	9	16.70090478	25.80714726	19.75786438	31.24208431	M5	0.828571429	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.234	83	0	0	NA	7qE1	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.992183722	sgMsh2	cell line
chr7	108066532	108066532	T	C	ENSMUST00000071658.2	NA	ENSMUSG00000063120	missense	M/V	89	Olfr480	ENSMUST00000071658.2:c.265A>G	ENSMUSP00000071583.2:p.Met89Val	H-2-Kb	8	11	1	VYLFLSHL	MYLFLSHL	NetMHCpan	13.1	28.9	2.206	184	0.228	134.327	287.934	2.144	52.58	23.33	28.9	13.1	523.2870654	245.323979	556.8522772	262.8693795	M5	1.271428571	1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.238	184	0	0	NA	7qE3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr7	108031681	108031681	A	G	ENSMUST00000210173.2	3	ENSMUSG00000094426	missense	Y/H	221	Olfr478	ENSMUST00000210173.2:c.661T>C	ENSMUSP00000147713.1:p.Tyr221His	H-2-Kb	8	9	3	ISHIYILI	ISYIYILI	NetMHCpan	32.1	7	0.218	322	0.23	78.835	8.59	0.109	4.24	53.98	7	32.1	10.56185011	124.3769779	10.17981768	103.6907462	M5	1.714285714	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.233	322	0	0	NA	7qE3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.987943621	sgMsh2	cell line
chr7	102927910	102927910	T	A	ENSMUST00000215782.2	5	ENSMUSG00000073963	missense	I/N	94	Olfr572	ENSMUST00000215782.2:c.281T>A	ENSMUSP00000149174.1:p.Ile94Asn	H-2-Kb	8	6	6	FNYKFNTF	FNYKFITF	NetMHCpan	50.8	48.2	0.949	172	0.209	130.321	119.91	0.92	86.45	77.52	48.2	50.8	158.0301673	183.1217795	153.3698525	187.8192059	M5	-1.042857143	-1.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.224	172	0	0	NA	7qE3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.949782708	sgMsh2	cell line
chr7	127905762	127905762	T	C	ENSMUST00000071056.13	1	ENSMUSG00000030802	missense	I/T	130	Bckdk	ENSMUST00000071056.13:c.389T>C	ENSMUSP00000070345.7:p.Ile130Thr	H-2-Kb	8	10	2	YTRAFQKL	YIRAFQKL	NetMHCpan	121.7	137.9	1.133	202	0.243	139.122	142.352	1.023	95.73	131.44	137.9	121.7	146.8047136	146.8047136	188.2521739	180.6092545	M5	-0.6	-0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.238	202	210	45	0.214285714	7qF3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr7	84916076	84916076	T	C	ENSMUST00000214501.2	5	ENSMUSG00000070459	missense	L/S	99	Olfr290	ENSMUST00000214501.2:c.296T>C	ENSMUSP00000149411.1:p.Leu99Ser	H-2-Kb	8	10	2	ASQLYFLV	ALQLYFLV	NetMHC	147.53	3327.57	22.555	503	0.221	175.029	2029.316	11.594	3327.57	147.53	2934.7	203.6	1123.931906	163.9607892	1108.510982	186.0972691	M5	1.285714286	1.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.224	503	0	0	NA	7qD3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.949782708	sgMsh2	cell line
chr7	105555462	105555462	AC	A	ENSMUST00000046983.9	1	ENSMUSG00000037049	FS	P/X	183	Smpd1	ENSMUST00000046983.9:c.551del	ENSMUSP00000042187.8:p.Pro184GlnfsTer72	H-2-Kb	8	47	0	VQIHFAAA	NA	SMMPMBEC	150.918	NA	NA	83	0.277	175.233	NA	NA	NA	165.65	NA	488.7	NA	184.8161845	NA	150.9176382	M5	0.857142857	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.288	83	47	3	0.063829787	7qE3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr7	108171874	108171874	G	A	ENSMUST00000072035.3	NA	ENSMUSG00000096068	missense	P/L	290	Olfr486	ENSMUST00000072035.3:c.869C>T	ENSMUSP00000071918.3:p.Pro290Leu	H-2-Kb	8	5	7	VIPVLNLL	VIPVLNPL	NetMHC	173.73	43.03	0.248	229	0.214	354.134	130.801	0.369	43.03	173.73	146.4	422.9	115.8083836	306.71852	145.794117	401.5503419	M5	2.142857143	2.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.216	229	0	0	NA	7qE3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.915861897	sgMsh2	cell line
chr7	108031681	108031681	A	G	ENSMUST00000210173.2	3	ENSMUSG00000094426	missense	Y/H	221	Olfr478	ENSMUST00000210173.2:c.661T>C	ENSMUSP00000147713.1:p.Tyr221His	H-2-Kb	8	7	5	IAISHIYI	IAISYIYI	NetMHCpan	132.8	22.8	0.172	322	0.23	294.664	57.982	0.197	28.92	212.85	22.8	132.8	99.25216755	384.3616066	87.04423244	376.4783444	M5	1.428571429	1.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.233	322	0	0	NA	7qE3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.987943621	sgMsh2	cell line
chr7	91940074	91940074	T	A	ENSMUST00000107196.9	1	ENSMUSG00000052572	missense	I/N	227	Dlg2	ENSMUST00000107196.9:c.680T>A	ENSMUSP00000102814.2:p.Ile227Asn	H-2-Kb	8	5	7	SIYVTKNI	SIYVTKII	NetMHC	242.01	2437.57	10.072	100	0.23	286.831	2390.198	8.333	2437.57	242.01	1637.8	259.8	2481.646968	364.5356443	2342.825811	313.8629122	M5	0.542857143	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.233	100	0	0	NA	7qE1	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.987943621	sgMsh2	cell line
chr7	105555462	105555462	AC	A	ENSMUST00000046983.9	1	ENSMUSG00000037049	FS	P/X	183	Smpd1	ENSMUST00000046983.9:c.551del	ENSMUSP00000042187.8:p.Pro184GlnfsTer72	H-2-Kb	8	38	0	STWRAQTL	NA	NetMHCpan	140.5	NA	NA	83	0.277	249.349	NA	NA	NA	259.51	NA	140.5	NA	239.1883374	NA	262.2647967	M5	-0.671428571	-0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.288	83	47	3	0.063829787	7qE3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr7	143781688	143781688	A	T	ENSMUST00000054048.9	1	ENSMUSG00000048965	missense	L/H	26	Mrgpre	ENSMUST00000054048.9:c.77T>A	ENSMUSP00000058000.8:p.Leu26His	H-2-Kb	8	7	5	TILSHTEL	TILSLTEL	SMM	254.531	564.599	2.218	70	0.286	270.59	569.599	2.105	574.6	263.48	405.1	277.7	564.598864	254.5305993	580.4168341	288.8949831	M5	0.557142857	0.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.286	70	2	0	0	7qF5	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr7	108714066	108714066	C	A	ENSMUST00000074730.3	NA	ENSMUSG00000056946	missense	L/M	238	Olfr512	ENSMUST00000074730.3:c.712C>A	ENSMUSP00000074291.4:p.Leu238Met	H-2-Kb	8	6	6	ILFTIMRM	ILFTILRM	NetMHCpan	74.1	112.6	1.52	304	0.286	290.124	605.685	2.088	729.71	264.21	112.6	74.1	758.1235717	462.1042896	481.6593553	316.0385059	M5	1.385714286	1.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.292	304	0	0	NA	7qE3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr7	100503182	100503182	A	G	ENSMUST00000207405.1	1	ENSMUSG00000030708	missense	M/T	309	Dnajb13	ENSMUST00000207405.1:c.926T>C	ENSMUSP00000147019.1:p.Met309Thr	H-2-Kb	8	13	2	QTLRQALL	QMLRQALL	SMM	286.906	520.883	1.816	57	0.105	461.754	706.441	1.53	350.19	416.82	892	1408.6	520.8827797	286.906244	911.4650073	506.6872779	M5	0.642857143	0.642857143	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.115	57	5	2	0.4	7qE2	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.487611658	sgMsh2	cell line
chr7	137453497	137453497	CT	C	ENSMUST00000064404.7	1	ENSMUSG00000031068	FS	F/X	123	Glrx3	ENSMUST00000064404.7:c.369del	ENSMUSP00000066621.6:p.Pro124LeufsTer16	H-2-Kb	8	7	6	SSGAFLLV	SSGAFPPS	SMM	298.36	369.607	1.239	107	0.308	366.649	2823.885	7.702	5143.41	426.58	5873.8	646.1	369.6068402	298.3595888	504.3592613	306.71852	M5	2.171428571	2.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.313	107	305	0	0	7qF4	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr7	108066532	108066532	T	C	ENSMUST00000071658.2	NA	ENSMUSG00000063120	missense	M/V	89	Olfr480	ENSMUST00000071658.2:c.265A>G	ENSMUSP00000071583.2:p.Met89Val	H-2-Kb	8	8	4	HTPVYLFL	HTPMYLFL	NetMHCpan	245.7	219.6	0.894	184	0.228	262.002	292.515	1.116	407.26	463.94	219.6	245.7	316.0385059	266.5262568	268.9923939	257.4779247	M5	1.571428571	1.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.238	184	0	0	NA	7qE3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr7	86811337	86811337	G	A	ENSMUST00000164996.1	5	ENSMUSG00000090949	missense	V/I	624	Vmn2r77	ENSMUST00000164996.1:c.1870G>A	ENSMUSP00000129540.1:p.Val624Ile	H-2-Kb	8	6	6	ETLSYILL	ETLSYVLL	SMMPMBEC	299.737	258.071	0.861	231	0.247	438.719	380.319	0.867	864.89	988.22	444.6	532.5	316.0385059	344.9371732	258.0714726	299.7367541	M5	1.871428571	1.871428571	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.254	231	0	0	NA	7qD3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr7	86811337	86811337	G	A	ENSMUST00000164996.1	5	ENSMUSG00000090949	missense	V/I	624	Vmn2r77	ENSMUST00000164996.1:c.1870G>A	ENSMUSP00000129540.1:p.Val624Ile	H-2-Kb	9	8	4	LSYILLTSL	LSYVLLTSL	NetMHCpan	26.5	23.3	0.879	231	0.247	55.636	50.423	0.906	24.09	28.24	23.3	26.5	76.75558746	92.92017092	84.382036	83.03286055	M5	1.871428571	1.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.254	231	0	0	NA	7qD3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr7	108066532	108066532	T	C	ENSMUST00000071658.2	NA	ENSMUSG00000063120	missense	M/V	89	Olfr480	ENSMUST00000071658.2:c.265A>G	ENSMUSP00000071583.2:p.Met89Val	H-2-Kb	9	10	2	PVYLFLSHL	PMYLFLSHL	SMM	27.74	12.797	0.461	184	0.228	31.825	25.891	0.814	28.38	30.85	39.4	32.8	12.79705392	27.74022632	23.40183969	47.56089297	M5	1.271428571	1.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.238	184	0	0	NA	7qE3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr7	99667112	99667112	T	C	ENSMUST00000107088.7	1	ENSMUSG00000030737	missense	T/A	404	Slco2b1	ENSMUST00000107088.7:c.1210A>G	ENSMUSP00000102703.1:p.Thr404Ala	H-2-Kb	9	10	2	IAASFANML	ITASFANML	NetMHC	49.5	59.95	1.211	83	0.217	106.089	142.925	1.347	59.95	49.5	72	56.9	213.850367	155.2780255	358.3026333	277.4917016	M5	1.114285714	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.234	83	0	0	NA	7qE1	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.992183722	sgMsh2	cell line
chr7	99667112	99667112	T	C	ENSMUST00000107088.7	1	ENSMUSG00000030737	missense	T/A	404	Slco2b1	ENSMUST00000107088.7:c.1210A>G	ENSMUSP00000102703.1:p.Thr404Ala	H-2-Kb	9	9	3	SIAASFANM	SITASFANM	NetMHC	52.64	67.03	1.273	83	0.217	261.476	391.398	1.497	67.03	52.64	142.9	83.3	639.8968908	439.6529586	738.3291242	556.2243536	M5	0.828571429	1.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.234	83	0	0	NA	7qE1	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.992183722	sgMsh2	cell line
chr7	84916076	84916076	T	C	ENSMUST00000214501.2	5	ENSMUSG00000070459	missense	L/S	99	Olfr290	ENSMUST00000214501.2:c.296T>C	ENSMUSP00000149411.1:p.Leu99Ser	H-2-Kb	9	11	1	SQLYFLVAL	LQLYFLVAL	NetMHC	66.9	251.74	3.763	503	0.221	144.691	319.716	2.21	251.74	66.9	421.8	80.4	313.4079437	208.9825384	326.0243217	254.2435828	M5	2.7	2.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.224	503	0	0	NA	7qD3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.949782708	sgMsh2	cell line
chr7	108845947	108845947	G	T	ENSMUST00000216092.1	5	ENSMUSG00000062434	missense	P/H	21	Olfr516	ENSMUST00000216092.1:c.62C>A	ENSMUSP00000149160.1:p.Pro21His	H-2-Kb	9	5	7	LGFSNYHEL	LGFSNYPEL	NetMHCpan	53.7	43.5	0.81	186	0.274	137.858	83.806	0.608	46.8	88.17	43.5	53.7	120.8119794	187.5469475	141.0100284	219.4067579	M5	-0.814285714	-0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.286	186	0	0	NA	7qE3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr7	86230157	86230157	G	T	ENSMUST00000165771.1	5	ENSMUSG00000091239	missense	L/I	312	Vmn2r76	ENSMUST00000165771.1:c.934C>A	ENSMUSP00000127309.1:p.Leu312Ile	H-2-Kb	9	11	1	IFNSFHGTL	LFNSFHGTL	NetMHC	90.6	323.06	3.566	125	0.248	213.074	517.132	2.427	323.06	90.6	536.4	171.4	497.86317	254.7475407	565.2622723	289.2344371	M5	-0.285714286	0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.246	125	0	0	NA	7qD3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr7	114415719	114415719	T	A	ENSMUST00000032909.8	1	ENSMUSG00000030671	missense	F/I	57	Pde3b	ENSMUST00000032909.8:c.169T>A	ENSMUSP00000032909.8:p.Phe57Ile	H-2-Kb	9	3	9	SFFFHLCRI	SFFFHLCRF	NetMHCpan	72.6	139.3	1.919	9	0.222	129.869	106.423	0.819	99.54	117.47	139.3	72.6	96.62955956	142.2689086	113.3052413	151.4432775	M5	1.242857143	1.528571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;MuSe	2	0.3	9	0	0	NA	7qF1	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr7	103506578	103506578	C	T	ENSMUST00000217627.1	5	ENSMUSG00000045584	missense	D/N	123	Olfr610	ENSMUST00000217627.1:c.367G>A	ENSMUSP00000150921.1:p.Asp123Asn	H-2-Kb	9	8	4	MAFNRCVAI	MAFDRCVAI	NetMHCpan	110.3	206.1	1.869	136	0.287	173.167	220.003	1.27	220.6	147.61	206.1	110.3	295.876178	284.5181656	219.4067579	198.7238535	M5	1.114285714	1.114285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.292	136	0	0	NA	7qE3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr7	108031681	108031681	A	G	ENSMUST00000210173.2	3	ENSMUSG00000094426	missense	Y/H	221	Olfr478	ENSMUST00000210173.2:c.661T>C	ENSMUSP00000147713.1:p.Tyr221His	H-2-Kb	9	7	5	IAISHIYIL	IAISYIYIL	NetMHCpan	89.6	39.6	0.442	322	0.23	172.099	112.772	0.655	92.77	178.58	39.6	89.6	132.7730709	165.6189397	178.3405083	224.0010221	M5	1.714285714	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.233	322	0	0	NA	7qE3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.987943621	sgMsh2	cell line
chr7	103041581	103041581	T	G	ENSMUST00000098212.1	NA	ENSMUSG00000073961	missense	V/G	34	Olfr582	ENSMUST00000098212.1:c.101T>G	ENSMUSP00000095813.1:p.Val34Gly	H-2-Kb	9	5	7	ENYQFWGAF	ENYQFWVAF	SMMPMBEC	145.63	130.994	0.899	213	0.211	188.164	213.022	1.132	272.19	206.07	320.9	263.7	153.854428	170.2589693	130.9935766	145.6297151	M5	0.185714286	0.185714286	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.208	213	0	0	NA	7qE3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.881941086	sgMsh2	cell line
chr7	138229856	138229856	A	G	ENSMUST00000160436.1	5	ENSMUSG00000091002	missense	M/T	464	Tcerg1l	ENSMUST00000160436.1:c.1391T>C	ENSMUSP00000124476.1:p.Met464Thr	H-2-Kb	9	5	7	VTHFRDTLL	VTHFRDMLL	SMMPMBEC	144.295	160.048	1.109	60	0.233	193.254	171.84	0.889	177.68	224.66	340.6	468.5	166.0007308	161.8489924	160.0479073	144.2945739	M5	-0.214285714	-0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.223	60	0	0	NA	7qF4	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.945542607	sgMsh2	cell line
chr7	108317521	108317521	T	C	ENSMUST00000214605.1	2	ENSMUSG00000094612	missense	V/A	209	Olfr491	ENSMUST00000214605.1:c.626T>C	ENSMUSP00000150694.1:p.Val209Ala	H-2-Kb	9	10	2	VATVFVISV	VVTVFVISV	NetMHC	342.27	467.62	1.366	335	0.209	395.11	553.012	1.4	467.62	342.27	735.6	356.6	487.6519891	433.6206938	618.3722614	534.872168	M5	2.628571429	3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.215	335	0	0	NA	7qE3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.911621796	sgMsh2	cell line
chr7	137453497	137453497	CT	C	ENSMUST00000064404.7	1	ENSMUSG00000031068	FS	F/X	123	Glrx3	ENSMUST00000064404.7:c.369del	ENSMUSP00000066621.6:p.Pro124LeufsTer16	H-2-Kb	9	7	6	SSGAFLLVL	SSGAFPPST	SMM	296.558	2466.664	8.318	107	0.308	319.799	4709.883	14.728	6900.64	377.3	8490.6	340.2	2466.664026	296.558243	2519.126636	299.3987618	M5	2.828571429	2.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.313	107	305	0	0	7qF4	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr7	81348426	81348426	T	A	ENSMUST00000178892.2	1	ENSMUSG00000025586	missense	Y/F	535	Cpeb1	ENSMUST00000178892.2:c.1604A>T	ENSMUSP00000137079.1:p.Tyr535Phe	H-2-Kb	9	7	5	VCFKFFCRS	VCFKYFCRS	SMM	96.407	118.607	1.23	49	0.265	202.811	222.153	1.095	822.05	618.66	325.7	298.9	118.6069123	96.40731774	113.5664369	106.721028	M5	0.242857143	1.957142857	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.262	49	4	1	0.25	7qD3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr7	104003305	104003305	G	A	ENSMUST00000209757.2	NA	ENSMUSG00000094063	missense	G/D	16	Olfr638	ENSMUST00000209757.2:c.47G>A	ENSMUSP00000148160.2:p.Gly16Asp	H-2-Kb	9	9	3	THDPFYFIL	THGPFYFIL	SMM	390.041	253.577	0.65	313	0.256	444.154	271.15	0.61	601.06	1145.75	260.3	447.5	253.577082	390.0407654	282.000579	440.8085403	M5	1.071428571	1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.251	313	0	0	NA	7qE3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr7	114415719	114415719	T	A	ENSMUST00000032909.8	1	ENSMUSG00000030671	missense	F/I	57	Pde3b	ENSMUST00000032909.8:c.169T>A	ENSMUSP00000032909.8:p.Phe57Ile	H-2-Kb	10	2	10	RSFFFHLCRI	RSFFFHLCRF	NetMHCpan	64.9	96	1.479	9	0.222	469.201	408.578	0.871	275.33	313.43	96	64.9	957.9216746	1214.311198	541.8261981	624.9711934	M5	1.242857143	1.528571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;MuSe	2	0.3	9	0	0	NA	7qF1	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr8	109551631	109551631	C	T	ENSMUST00000042601.8	1	ENSMUSG00000037993	missense	D/N	1138	Dhx38	ENSMUST00000042601.8:c.3412G>A	ENSMUSP00000047865.7:p.Asp1138Asn	H-2-Db	9	7	5	VTAVNGEWL	VTAVDGEWL	NetMHC	127.35	8821.39	69.269	79	0.241	384.136	9938.338	25.872	8821.39	127.35	6722.3	173.2	12723.89276	660.1156057	11055.28645	595.0726634	M5	0.214285714	0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.239	79	62	23	0.370967742	8qD3	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr8	68282404	68282404	CA	C	ENSMUST00000066594.3	1	ENSMUSG00000053886	FS	P/X	58	Sh2d4a	ENSMUST00000066594.3:c.180del	ENSMUSP00000070825.3:p.Glu61ArgfsTer20	H-2-Db	9	18	0	LSIGSWAPI	NA	NetMHCpan	310.2	NA	NA	95	0.221	355.655	NA	NA	NA	788.99	NA	310.2	NA	393.2058767	NA	318.1046371	M5	1.014285714	1.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.227	95	114	0	0	8qB3.3	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	0.962503012	sgMsh2	cell line
chr8	113639733	113639733	C	A	ENSMUST00000035777.9	1	ENSMUSG00000078908	missense	L/M	454	Mon1b	ENSMUST00000035777.9:c.1360C>A	ENSMUSP00000045089.8:p.Leu454Met	H-2-Kb	8	11	1	MSDLYHRL	LSDLYHRL	SMM	37.822	89.689	2.371	123	0.211	62.731	139.46	2.223	189.23	87.64	275.9	149.4	89.68916897	37.82160895	74.25744462	37.82160895	M5	-0.814285714	-0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.228	123	21	5	0.238095238	8qE1	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	0.966743114	sgMsh2	cell line
chr8	56110553	56110553	A	G	ENSMUST00000000275.8	1	ENSMUSG00000038257	missense	K/R	361	Glra3	ENSMUST00000000275.8:c.1082A>G	ENSMUSP00000000275.7:p.Lys361Arg	H-2-Kb	8	6	6	VSRQHREL	VSRQHKEL	SMM	69.621	143.794	2.065	194	0.268	100.959	250.036	2.477	322.76	105.37	1502.7	872.9	143.7937467	69.6209588	177.3127641	96.54727043	M5	-2.314285714	-2.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.266	194	0	0	NA	8qB2	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr8	124028933	124028933	T	C	ENSMUST00000034457.8	1	ENSMUSG00000031976	missense	Y/H	460	Urb2	ENSMUST00000034457.8:c.1378T>C	ENSMUSP00000034457.8:p.Tyr460His	H-2-Kb	8	7	5	VFQTHAKL	VFQTYAKL	SMM	70.915	18.312	0.258	178	0.219	106.19	20.473	0.193	16.15	114.49	51	301.1	18.31217795	70.91530907	22.63288934	97.89037676	M5	-0.414285714	-0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.216	178	66	21	0.318181818	8qE2	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	0.915861897	sgMsh2	cell line
chr8	117758761	117758761	C	CA	ENSMUST00000034304.8	1	ENSMUSG00000031844	FS	P/PX	321	Hsd17b2	ENSMUST00000034304.8:c.962_963insA	ENSMUSP00000034304.7:p.Val322CysfsTer40	H-2-Kb	8	38	0	VGLLSSLL	NA	NetMHC	159.51	NA	NA	113	0.23	207.182	NA	NA	NA	159.51	NA	179	NA	235.3639803	NA	288.8949831	M5	1.885714286	1.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.243	113	4	1	0.25	8qE1	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr8	105878842	105878842	T	C	ENSMUST00000008594.8	1	ENSMUSG00000008450	missense	F/S	103	Nutf2	ENSMUST00000008594.8:c.308T>C	ENSMUSP00000008594.7:p.Phe103Ser	H-2-Kb	8	5	7	MGFHQMSL	MGFHQMFL	NetMHCpan	61.8	73.9	1.196	121	0.24	150.906	134.413	0.891	345.7	271.66	73.9	61.8	105.6185011	124.0909187	163.2074578	177.7215122	M5	0.085714286	0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.262	121	2	1	0.5	8qD3	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr8	83725234	83725234	A	G	ENSMUST00000075843.12	1	ENSMUSG00000002885	missense	M/T	563	Adgre5	ENSMUST00000075843.12:c.1688T>C	ENSMUSP00000075240.6:p.Met563Thr	H-2-Kb	8	7	5	SSRTTVHL	SSRTMVHL	SMMPMBEC	310.27	134.196	0.433	93	0.194	344.132	130.589	0.379	73.79	367.09	280.6	1261.9	126.9813676	321.1737185	134.1961326	310.2701531	M5	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.202	93	86	19	0.220930233	8qC2	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	0.856500478	sgMsh2	cell line
chr8	15921821	15921821	T	A	ENSMUST00000082104.6	1	ENSMUSG00000060924	missense	Y/F	3003	Csmd1	ENSMUST00000082104.6:c.9008A>T	ENSMUSP00000080751.6:p.Tyr3003Phe	H-2-Kb	8	7	5	SSVIFACW	SSVIYACW	SMM	167.78	205.94	1.227	36	0.333	328.887	422.333	1.284	530.08	401.48	2390.1	2043.8	205.9396641	167.7799266	314.5864409	256.2949211	M5	2.014285714	2.028571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.333	36	0	0	NA	8qA1.1	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	2	1	sgMsh2	cell line
chr8	117758761	117758761	C	CA	ENSMUST00000034304.8	1	ENSMUSG00000031844	FS	P/PX	321	Hsd17b2	ENSMUST00000034304.8:c.962_963insA	ENSMUSP00000034304.7:p.Val322CysfsTer40	H-2-Kb	8	42	0	SSLLPHQL	NA	SMM	231.068	NA	NA	113	0.23	354.972	NA	NA	NA	439.71	NA	595	NA	231.0681036	NA	270.2340064	M5	0.328571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.243	113	4	1	0.25	8qE1	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr8	94870519	94870519	A	G	ENSMUST00000211939.1	2	ENSMUSG00000031783	missense	Q/R	276	Polr2c	ENSMUST00000211939.1:c.827A>G	ENSMUSP00000148830.1:p.Gln276Arg	H-2-Kb	8	8	4	LTLRSLPL	LTLQSLPL	NetMHCpan	327.6	685.7	2.093	42	0.167	335.545	550.203	1.64	950.43	499.98	685.7	327.6	394.2212222	333.2268594	414.7056956	337.8625068	M5	0.542857143	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.208	42	0	0	NA	8qC5	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	0.881941086	sgMsh2	cell line
chr8	67960592	67960592	G	A	ENSMUST00000098696.9	1	ENSMUSG00000030465	missense	P/S	429	Psd3	ENSMUST00000098696.9:c.1285C>T	ENSMUSP00000096293.3:p.Pro429Ser	H-2-Kb	9	4	8	SYFSFEMSL	SYFSFEMPL	NetMHCpan	24.5	18.6	0.759	138	0.312	42.795	25.409	0.594	18.6	29.47	18.6	24.5	32.21884741	56.11900987	57.18077009	97.77999259	M5	0.885714286	0.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.304	138	24	5	0.208333333	8qB3.2	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr8	124028933	124028933	T	C	ENSMUST00000034457.8	1	ENSMUSG00000031976	missense	Y/H	460	Urb2	ENSMUST00000034457.8:c.1378T>C	ENSMUSP00000034457.8:p.Tyr460His	H-2-Kb	9	6	6	TVFQTHAKL	TVFQTYAKL	NetMHC	42.12	10.72	0.255	178	0.219	141.749	43.932	0.31	10.72	42.12	14.2	48.4	86.71814915	303.4659719	73.66310144	235.0985768	M5	-0.414285714	0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.216	178	66	21	0.318181818	8qE2	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	0.915861897	sgMsh2	cell line
chr8	109551631	109551631	C	T	ENSMUST00000042601.8	1	ENSMUSG00000037993	missense	D/N	1138	Dhx38	ENSMUST00000042601.8:c.3412G>A	ENSMUSP00000047865.7:p.Asp1138Asn	H-2-Kb	9	10	2	VNGEWLAEL	VDGEWLAEL	NetMHC	116.53	3630.39	31.154	79	0.241	130.917	2132.941	16.292	3630.39	116.53	5738.1	292.5	635.4918716	125.9244318	562.6651281	135.909558	M5	0.157142857	0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.239	79	62	23	0.370967742	8qD3	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr8	114230323	114230323	TA	T	ENSMUST00000049509.6	1	ENSMUSG00000046844	FS	V/X	115	Vat1l	ENSMUST00000049509.6:c.348del	ENSMUSP00000053431.6:p.Gly117AspfsTer35	H-2-Kb	9	19	0	VSWHLSTTM	NA	NetMHCpan	114.3	NA	NA	100	0.25	170.81	NA	NA	NA	135.03	NA	114.3	NA	206.5903351	NA	228.165512	M5	-0.085714286	0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.244	100	0	0	NA	8qE1	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr8	105878842	105878842	T	C	ENSMUST00000008594.8	1	ENSMUSG00000008450	missense	F/S	103	Nutf2	ENSMUST00000008594.8:c.308T>C	ENSMUSP00000008594.7:p.Phe103Ser	H-2-Kb	9	4	8	IMGFHQMSL	IMGFHQMFL	SMMPMBEC	166.437	225.554	1.355	121	0.24	175.497	253.816	1.446	305.48	177.57	275.3	221.2	232.3325184	173.4243199	225.553723	166.4370463	M5	0.085714286	0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.262	121	2	1	0.5	8qD3	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr8	105878842	105878842	T	C	ENSMUST00000008594.8	1	ENSMUSG00000008450	missense	F/S	103	Nutf2	ENSMUST00000008594.8:c.308T>C	ENSMUSP00000008594.7:p.Phe103Ser	H-2-Kb	9	5	7	MGFHQMSLL	MGFHQMFLL	NetMHCpan	61.9	85	1.373	121	0.24	289.966	372.137	1.283	284.96	204	85	61.9	459.3143352	375.9326101	492.3228579	387.4806325	M5	0.685714286	0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.262	121	2	1	0.5	8qD3	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr8	68282404	68282404	CA	C	ENSMUST00000066594.3	1	ENSMUSG00000053886	FS	P/X	58	Sh2d4a	ENSMUST00000066594.3:c.180del	ENSMUSP00000070825.3:p.Glu61ArgfsTer20	H-2-Kb	9	18	0	LSIGSWAPI	NA	NetMHC	259.46	NA	NA	95	0.221	318.801	NA	NA	NA	259.46	NA	279.3	NA	480.961153	NA	358.3026333	M5	1.014285714	1.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.227	95	114	0	0	8qB3.3	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	0.962503012	sgMsh2	cell line
chr8	86019109	86019109	C	T	ENSMUST00000053771.13	1	ENSMUSG00000036879	missense	H/Y	644	Phkb	ENSMUST00000053771.13:c.1930C>T	ENSMUSP00000050788.7:p.His644Tyr	H-2-Kb	9	10	2	VYVDRLQTL	VHVDRLQTL	SMM	212.868	295.196	1.387	130	0.3	274.298	427.078	1.557	558.96	333.69	690.3	490.7	295.1956816	212.8678139	283.9553136	214.9067221	M5	-0.057142857	-0.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.287	130	45	11	0.244444444	8qC3	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr8	56110553	56110553	A	G	ENSMUST00000000275.8	1	ENSMUSG00000038257	missense	K/R	361	Glra3	ENSMUST00000000275.8:c.1082A>G	ENSMUSP00000000275.7:p.Lys361Arg	H-2-Kb	9	6	6	VSRQHRELL	VSRQHKELL	SMM	223.414	253.577	1.135	194	0.268	294.719	447.137	1.517	629.88	360.22	1230.8	842.1	253.577082	223.4138023	264.3930288	229.2186762	M5	-1.657142857	-1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.266	194	0	0	NA	8qB2	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr8	105178615	105178615	A	T	ENSMUST00000052209.8	1	ENSMUSG00000031885	missense	N/I	63	Cbfb	ENSMUST00000052209.8:c.188A>T	ENSMUSP00000059382.2:p.Asn63Ile	H-2-Kb	9	3	9	IAFVATGTI	IAFVATGTN	NetMHCpan	147.4	7924.2	53.76	117	0.248	476.809	5159.061	10.82	13674.64	401.4	7924.2	147.4	2393.922023	552.2172896	1762.990613	624.0939895	M5	1.642857143	2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.251	117	199	49	0.246231156	8qD3	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr8	105844945	105844945	T	C	ENSMUST00000040776.5	1	ENSMUSG00000036672	missense	Y/C	492	Cenpt	ENSMUST00000040776.5:c.1475A>G	ENSMUSP00000038188.4:p.Tyr492Cys	H-2-Kb	9	6	6	VLVERCLPL	VLVERYLPL	NetMHCpan	261	40.5	0.155	165	0.242	361.302	65.12	0.18	58.42	420.13	40.5	261	87.72229799	411.2538721	71.82076058	311.3508101	M5	0.671428571	1.5	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.256	165	50	15	0.3	8qD3	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr9	105022362	105022362	C	T	ENSMUST00000057742.14	1	ENSMUSG00000032564	missense	P/S	415	Cpne4	ENSMUST00000057742.14:c.1243C>T	ENSMUSP00000049663.8:p.Pro415Ser	H-2-Db	9	4	8	YGPTNIASI	YGPTNIAPI	NetMHC	7.6	3.11	0.409	129	0.202	81.974	22.823	0.278	3.11	7.6	6.6	17.2	46.09141064	163.9154914	39.04541112	146.7472596	M5	0.6	0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	129	0	0	NA	9qF1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.958262911	sgMsh2	cell line
chr9	80136750	80136750	GA	G	ENSMUST00000165607.8	1	ENSMUSG00000034252	FS	K/X	888	Senp6	ENSMUST00000165607.8:c.2672del	ENSMUSP00000126777.2:p.Asn891IlefsTer44	H-2-Db	9	42	0	ASGMNASVL	NA	NetMHC	36.8	NA	NA	73	0.342	141.593	NA	NA	NA	36.8	NA	75.9	NA	216.0827011	NA	207.2860138	M5	1	1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.362	73	223	20	0.089686099	9qE1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	2	1	sgMsh2	cell line
chr9	100855832	100855832	A	T	ENSMUST00000129269.7	1	ENSMUSG00000037286	missense	E/V	414	Stag1	ENSMUST00000129269.7:c.1241A>T	ENSMUSP00000116205.1:p.Glu414Val	H-2-Db	9	3	9	EALSNEDCV	EALSNEDCE	NetMHC	162.17	20754.53	127.98	235	0.277	364.555	11513.819	31.583	20754.53	162.17	29954.3	951.5	2273.107631	411.7370988	1269.316718	317.3730167	M5	-0.114285714	-0.114285714	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.278	235	75	14	0.186666667	9qE3.3	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr9	15332156	15332156	G	A	ENSMUST00000098979.10	5	ENSMUSG00000046111	missense	A/V	1668	Cep295	ENSMUST00000098979.10:c.5003C>T	ENSMUSP00000096578.3:p.Ala1668Val	H-2-Db	9	5	7	HAAPNDVVI	HAAPNDAVI	NetMHCpan	170.5	195	1.144	167	0.228	340.528	276.16	0.811	415.32	374.26	195	170.5	280.9441543	357.7832461	271.3751022	323.2734217	M5	0.871428571	0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.219	167	33	8	0.242424242	9qA2	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.928582201	sgMsh2	cell line
chr9	44402403	44402403	G	A	ENSMUST00000213388.1	1	ENSMUSG00000032114	missense	V/I	409	Slc37a4	ENSMUST00000213388.1:c.1225G>A	ENSMUSP00000150843.1:p.Val409Ile	H-2-Kb	8	9	3	STIVFFLL	STVVFFLL	NetMHC	8.18	13.88	1.697	83	0.277	17.327	30.659	1.769	13.88	8.18	28.3	16.8	34.09887101	17.85418375	33.01718172	17.93659491	M5	3.028571429	3.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.3	83	28	7	0.25	9qA5.2	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr9	38116618	38116618	AT	A	ENSMUST00000217286.1	5	ENSMUSG00000096356	FS	I/X	274	Olfr889	ENSMUST00000217286.1:c.826del	ENSMUSP00000148913.1:p.Tyr276IlefsTer8	H-2-Kb	8	8	6	LSTIFIPL	LSTIFYTI	NetMHC	31.19	498.24	15.974	184	0.272	42.462	521.208	12.275	498.24	31.19	135.1	36.2	560.7121928	49.28786429	544.1767718	48.72367077	M5	1.785714286	1.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.271	184	0	0	NA	9qA4	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr9	38581310	38581310	A	G	ENSMUST00000217160.2	2	ENSMUSG00000111448	missense	E/G	11	Olfr912	ENSMUST00000217160.2:c.32A>G	ENSMUSP00000150014.1:p.Glu11Gly	H-2-Kb	8	10	2	TGFILLGL	TEFILLGL	NetMHCpan	76	2780.8	36.589	173	0.225	133.538	1694.286	12.688	3753.82	131.95	2780.8	76	607.7710368	137.6385219	576.4212727	135.1263357	M5	2.557142857	2.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.238	173	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr9	45950101	45950101	A	G	ENSMUST00000114573.8	1	ENSMUSG00000034908	missense	V/A	245	Sidt2	ENSMUST00000114573.8:c.734T>C	ENSMUSP00000110220.2:p.Val245Ala	H-2-Kb	8	6	6	SNSFYAVV	SNSFYVVV	NetMHCpan	71.6	174.3	2.434	101	0.188	223.164	943.486	4.228	1073.42	164.01	174.3	71.6	816.0936526	282.3189304	1070.878008	371.3128679	M5	1.057142857	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.211	101	106	25	0.235849057	9qA5.2	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.89466139	sgMsh2	cell line
chr9	39258136	39258136	A	C	ENSMUST00000076903.2	NA	ENSMUSG00000063380	missense	C/G	182	Olfr945	ENSMUST00000076903.2:c.544T>G	ENSMUSP00000076169.2:p.Cys182Gly	H-2-Kb	8	6	6	INHYFGDI	INHYFCDI	NetMHCpan	102	90.9	0.891	214	0.491	276.289	313.213	1.134	217.41	182.12	90.9	102	466.380088	456.8146256	409.0157201	370.458872	M5	-0.657142857	-0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.492	214	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	2	1	sgMsh2	cell line
chr9	38848204	38848204	C	T	ENSMUST00000217350.1	5	ENSMUSG00000062103	missense	A/V	30	Olfr924	ENSMUST00000217350.1:c.89C>T	ENSMUSP00000149849.1:p.Ala30Val	H-2-Kb	8	11	1	VIYVITVV	AIYVITVV	NetMHC	202.6	1252.59	6.183	253	0.233	217.935	913.276	4.191	1252.59	202.6	849.9	203.2	976.6523514	259.2626764	797.5170931	232.6697911	M5	2.8	2.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.242	253	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr9	39018999	39018999	G	T	ENSMUST00000214410.1	5	ENSMUSG00000058820	missense	L/I	181	Olfr146	ENSMUST00000214410.1:c.541C>A	ENSMUSP00000149294.1:p.Leu181Ile	H-2-Kb	8	4	8	INHYFCDI	INHYFCDL	NetMHCpan	90.9	29.4	0.323	210	0.243	313.213	50.321	0.161	26.98	217.41	29.4	90.9	71.90183929	466.380088	71.24263926	409.0157201	M5	-0.242857143	-0.242857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.249	210	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr9	8649519	8649519	T	C	ENSMUST00000050433.7	1	ENSMUSG00000031997	missense	Y/H	577	Trpc6	ENSMUST00000050433.7:c.1729T>C	ENSMUSP00000057965.6:p.Tyr577His	H-2-Kb	8	10	2	KHYNLARI	KYYNLARI	NetMHC	258.76	241.12	0.932	95	0.242	285.591	427.9	1.498	241.12	258.76	443	509.9	462.1042896	286.906244	412.800296	284.2758718	M5	-0.342857143	-0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.242	95	0	0	NA	9qA1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr9	21309648	21309648	T	G	ENSMUST00000115433.10	1	ENSMUSG00000003309	missense	S/R	63	Ap1m2	ENSMUST00000115433.10:c.187A>C	ENSMUSP00000111093.3:p.Ser63Arg	H-2-Kb	8	6	6	LWIKHRNL	LWIKHSNL	NetMHC	270.13	164.42	0.609	90	0.267	412.985	338.064	0.819	164.42	270.13	406.5	836.8	349.7357273	425.3436955	326.3923717	400.6268017	M5	-1.1	-1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.273	90	0	0	NA	9qA3	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr9	99320290	99320290	C	T	ENSMUST00000042158.12	1	ENSMUSG00000037681	missense	V/M	523	Esyt3	ENSMUST00000042158.12:c.1567G>A	ENSMUSP00000038757.6:p.Val523Met	H-2-Kb	8	7	5	FSFFMHSV	FSFFVHSV	NetMHCpan	68.3	138.4	2.026	48	0.146	163.794	233.865	1.428	606.21	289.24	138.4	68.3	210.2519343	155.5034397	257.4779247	172.0838049	M5	0.985714286	0.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.174	48	0	0	NA	9qE3.3	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.737777639	sgMsh2	cell line
chr9	88476836	88476836	A	G	ENSMUST00000173801.7	1	ENSMUSG00000032423	missense	F/L	207	Syncrip	ENSMUST00000173801.7:c.619T>C	ENSMUSP00000133649.1:p.Phe207Leu	H-2-Kb	8	5	7	LNRGYALV	LNRGYAFV	NetMHC	300.95	433.7	1.441	54	0.296	353.739	317.073	0.896	433.7	300.95	347.9	331	249.8848923	376.4783444	286.246378	409.9585987	M5	0.014285714	0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.316	54	59	10	0.169491525	9qE3.1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr9	71284968	71284968	GC	G	ENSMUST00000034723.5	1	ENSMUSG00000013584	FS	P/X	401	Aldh1a2	ENSMUST00000034723.5:c.1203del	ENSMUSP00000034723.5:p.Thr402ProfsTer25	H-2-Kb	8	16	0	TSLMTCGL	NA	SMMPMBEC	313.863	NA	NA	98	0.245	381.785	NA	NA	NA	343.87	NA	419.7	NA	422.4156501	NA	313.8629122	M5	1.442857143	1.442857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.249	98	0	0	NA	9qD	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr9	41969739	41969739	T	G	ENSMUST00000060989.8	1	ENSMUSG00000049313	missense	K/T	2162	Sorl1	ENSMUST00000060989.8:c.6485A>C	ENSMUSP00000058613.8:p.Lys2162Thr	H-2-Kb	9	7	5	ILYTTHRRL	ILYTKHRRL	NetMHCpan	38.5	39.5	1.026	30	0.267	207.103	89.609	0.433	28.42	39.88	39.5	38.5	191.9154771	390.9399022	139.7172407	374.3260056	M5	-1.585714286	-0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.276	30	7	4	0.571428571	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr9	39078200	39078200	A	G	ENSMUST00000056499.3	NA	ENSMUSG00000048501	missense	F/L	182	Olfr938	ENSMUST00000056499.3:c.544T>C	ENSMUSP00000055053.2:p.Phe182Leu	H-2-Kb	9	3	9	INHYFCDLL	INHYFCDLF	NetMHC	40.99	129.13	3.15	184	0.277	94.887	238.502	2.514	129.13	40.99	365.4	57	223.9288243	132.7730709	253.0754397	146.3019114	M5	0.7	0.7	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.266	184	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr9	71725634	71725634	T	G	ENSMUST00000072899.8	5	ENSMUSG00000032232	missense	N/T	145	Cgnl1	ENSMUST00000072899.8:c.434A>C	ENSMUSP00000072672.2:p.Asn145Thr	H-2-Kb	9	10	2	LTFQRHPEL	LNFQRHPEL	NetMHCpan	36.8	28.1	0.764	128	0.258	90.799	70.924	0.781	73.26	81.31	28.1	36.8	84.74420308	133.0791444	68.58829388	100.2882377	M5	-1.385714286	-0.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.269	128	142	33	0.232394366	9qD	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr9	96297705	96297705	G	GA	ENSMUST00000165768.3	1	ENSMUSG00000032411	FS	E/EX	140	Tfdp2	ENSMUST00000165768.3:c.426dup	ENSMUSP00000128260.2:p.Glu143ArgfsTer47	H-2-Kb	9	20	0	PAYQFCSGM	NA	NetMHC	85.15	NA	NA	126	0.317	106.96	NA	NA	NA	85.15	NA	165.8	NA	88.53398242	NA	125.3862749	M5	0.171428571	0.171428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.311	126	96	0	0	9qE3.3	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr9	44402403	44402403	G	A	ENSMUST00000213388.1	1	ENSMUSG00000032114	missense	V/I	409	Slc37a4	ENSMUST00000213388.1:c.1225G>A	ENSMUSP00000150843.1:p.Val409Ile	H-2-Kb	9	11	1	IVFFLLRNI	VVFFLLRNI	NetMHCpan	47.8	44.7	0.935	83	0.277	187.871	134.222	0.714	72.96	87.93	44.7	47.8	195.4834522	287.8127307	217.8963724	288.5692163	M5	1.385714286	2.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.3	83	28	7	0.25	9qA5.2	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr9	63146869	63146869	C	A	ENSMUST00000055281.7	1	ENSMUSG00000022245	missense	W/C	15	Skor1	ENSMUST00000055281.7:c.45G>T	ENSMUSP00000055037.7:p.Trp15Cys	H-2-Kb	9	6	6	VTLRLCVPL	VTLRLWVPL	NetMHCpan	76.9	45.6	0.593	57	0.263	150.019	84.544	0.564	69.03	88.08	45.6	76.9	126.2147176	266.7534224	100.0575812	211.9580913	M5	1.714285714	1.9	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.292	57	0	0	NA	9qB	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr9	99320290	99320290	C	T	ENSMUST00000042158.12	1	ENSMUSG00000037681	missense	V/M	523	Esyt3	ENSMUST00000042158.12:c.1567G>A	ENSMUSP00000038757.6:p.Val523Met	H-2-Kb	9	5	7	QVFSFFMHS	QVFSFFVHS	SMM	57.559	60.549	1.052	48	0.146	164.785	259.089	1.572	363.92	157.68	405.2	235.7	60.54942175	57.55857057	154.2588183	171.8897579	M5	0.785714286	1.5	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.174	48	0	0	NA	9qE3.3	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.737777639	sgMsh2	cell line
chr9	80136750	80136750	GA	G	ENSMUST00000165607.8	1	ENSMUSG00000034252	FS	K/X	888	Senp6	ENSMUST00000165607.8:c.2672del	ENSMUSP00000126777.2:p.Asn891IlefsTer44	H-2-Kb	9	47	0	ASVLYIIQM	NA	NetMHC	227.71	NA	NA	73	0.342	259.534	NA	NA	NA	227.71	NA	259.5	NA	350.0338139	NA	259.5673122	M5	2.014285714	2.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.362	73	223	20	0.089686099	9qE1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	2	1	sgMsh2	cell line
chr9	39258136	39258136	A	C	ENSMUST00000076903.2	NA	ENSMUSG00000063380	missense	C/G	182	Olfr945	ENSMUST00000076903.2:c.544T>G	ENSMUSP00000076169.2:p.Cys182Gly	H-2-Kb	9	5	7	VINHYFGDI	VINHYFCDI	NetMHC	248.12	402.57	1.622	214	0.491	313.678	336.411	1.072	402.57	248.12	262.7	378.9	382.9217191	379.4110717	289.9011913	248.4562923	M5	-0.657142857	0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.492	214	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	2	1	sgMsh2	cell line
chr9	39258136	39258136	A	C	ENSMUST00000076903.2	NA	ENSMUSG00000063380	missense	C/G	182	Olfr945	ENSMUST00000076903.2:c.544T>G	ENSMUSP00000076169.2:p.Cys182Gly	H-2-Kb	9	6	6	INHYFGDIL	INHYFCDIL	NetMHCpan	249.4	114.5	0.459	214	0.491	350.747	161.261	0.46	107.57	280.66	114.5	249.4	208.0223508	420.8332054	225.553723	456.2995075	M5	0.385714286	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.492	214	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	2	1	sgMsh2	cell line
chr9	39018999	39018999	G	T	ENSMUST00000214410.1	5	ENSMUSG00000058820	missense	L/I	181	Olfr146	ENSMUST00000214410.1:c.541C>A	ENSMUSP00000149294.1:p.Leu181Ile	H-2-Kb	9	4	8	INHYFCDII	INHYFCDLI	NetMHC	329.69	127.26	0.386	210	0.243	436.374	256.697	0.588	127.26	329.69	183.7	356.2	329.6932077	516.547186	338.259498	521.4948213	M5	0.9	0.9	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.249	210	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr9	59324811	59324811	A	G	ENSMUST00000026265.7	1	ENSMUSG00000025235	missense	V/A	362	Bbs4	ENSMUST00000026265.7:c.1085T>C	ENSMUSP00000026265.6:p.Val362Ala	H-2-Kb	9	8	4	RAYAEAVRL	RAYVEAVRL	NetMHCpan	175.4	120.3	0.686	169	0.207	497.9	316.494	0.636	232.02	361.77	120.3	175.4	400.9682638	634.0302809	528.7495369	724.853099	M5	0.328571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.201	169	13	3	0.230769231	9qB	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.852260377	sgMsh2	cell line
chr9	43791318	43791318	A	G	ENSMUST00000034510.8	1	ENSMUSG00000032012	missense	M/V	121	Nectin1	ENSMUST00000034510.8:c.361A>G	ENSMUSP00000034510.7:p.Met121Val	H-2-Kb	9	11	1	VYICEFATF	MYICEFATF	SMM	270.464	693.601	2.564	80	0.263	347.49	830.945	2.391	915.58	403.74	908.1	406.8	693.6014622	270.4643321	753.7893549	291.2393144	M5	1.457142857	1.571428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.284	80	12	4	0.333333333	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chrX	133588496	133588496	A	G	ENSMUST00000149154.7	1	ENSMUSG00000051323	missense	M/T	977	Pcdh19	ENSMUST00000149154.7:c.2930T>C	ENSMUSP00000116886.1:p.Met977Thr	H-2-Db	9	5	7	WMPRNPTPT	WMPRNPMPT	NetMHC	233.44	1377.14	5.899	47	0.426	363.988	1119.682	3.076	1377.14	233.44	3001.1	2034.1	862.223787	394.1123099	717.0839465	333.8643134	M5	-2.028571429	-1.557142857	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.432	47	0	0	NA	XqE3	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	sgMsh2	cell line
chr9	106155782	106155782	A	G	ENSMUST00000036382.12	1	ENSMUSG00000020258	missense	V/A	344	Glyctk	ENSMUST00000036382.12:c.1031T>C	ENSMUSP00000047761.6:p.Val344Ala	H-2-Kb	8	10	2	RAARFYGL	RVARFYGL	NetMHCpan	27.8	30.5	1.097	65	0.292	63.802	70.784	1.109	50	37.5	30.5	27.8	91.56721386	90.10315536	110.8510982	119.8781411	M5	0.571428571	0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.287	65	0	0	NA	9qF1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr9	106155782	106155782	A	G	ENSMUST00000036382.12	1	ENSMUSG00000020258	missense	V/A	344	Glyctk	ENSMUST00000036382.12:c.1031T>C	ENSMUSP00000047761.6:p.Val344Ala	H-2-Kb	8	11	1	AARFYGLL	VARFYGLL	NetMHCpan	46.2	13.4	0.29	65	0.292	94.506	24.316	0.257	14.69	61.15	13.4	46.2	33.94220093	127.8615603	42.43654321	145.4587999	M5	0.857142857	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.287	65	0	0	NA	9qF1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chrX	13665387	13665387	T	C	ENSMUST00000053659.1	1	ENSMUSG00000047678	missense	V/A	58	Gpr82	ENSMUST00000053659.1:c.173T>C	ENSMUSP00000062535.1:p.Val58Ala	H-2-Kb	8	8	4	ANLATANL	ANLVTANL	NetMHC	110.98	65.42	0.589	135	0.548	127.103	105.176	0.827	65.42	110.98	97.7	151.4	116.611129	121.5458122	112.6522836	132.6600022	M5	0.5	0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.525	135	0	0	NA	XqA1.1	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	sgMsh2	cell line
chrX	7616007	7616007	C	A	ENSMUST00000115726.8	1	ENSMUSG00000031142	missense	L/I	577	Cacna1f	ENSMUST00000115726.8:c.1729C>A	ENSMUSP00000111391.2:p.Leu577Ile	H-2-Kb	8	10	2	MILKLYGL	MLLKLYGL	SMM	170.114	702.652	4.13	55	0.636	210.772	766.476	3.637	2079.27	216.55	830.3	222	702.6515361	170.1139779	701.0354824	204.9934573	M5	1.471428571	1.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.604	55	0	0	NA	XqA1.1	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	sgMsh2	cell line
chr9	108052065	108052065	A	G	ENSMUST00000162355.7	1	ENSMUSG00000041528	missense	V/A	1271	Rnf123	ENSMUST00000162355.7:c.3812T>C	ENSMUSP00000125745.1:p.Val1271Ala	H-2-Kb	8	8	4	ISAAFQPC	ISAVFQPC	SMM	176.092	168.943	0.959	157	0.166	417.672	294.935	0.706	357.2	561.35	396.1	585.7	168.9429215	176.0921516	232.6697911	273.9933359	M5	0.428571429	0.714285714	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.176	157	33	9	0.272727273	9qF1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.746257842	sgMsh2	cell line
chr9	108305809	108305809	G	T	ENSMUST00000044725.8	1	ENSMUSG00000039461	missense	L/M	46	Tcta	ENSMUST00000044725.8:c.136C>A	ENSMUSP00000045063.7:p.Leu46Met	H-2-Kb	8	5	7	TLFKLLML	TLFKLLLL	NetMHCpan	208.3	199.1	0.956	38	0.184	403.808	481.343	1.192	974.89	814.26	199.1	208.3	517.2970479	430.2689433	445.3895263	377.3462166	M5	2.285714286	2.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.158	38	9	3	0.333333333	9qF1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.669936017	sgMsh2	cell line
chr9	115257544	115257544	A	G	ENSMUST00000035010.9	1	ENSMUSG00000032437	missense	Y/H	336	Stt3b	ENSMUST00000035010.9:c.1006T>C	ENSMUSP00000035010.8:p.Tyr336His	H-2-Kb	9	4	8	QAYAFLQHL	QAYAFLQYL	NetMHC	5.62	6.61	1.176	34	0.235	20.241	21.852	1.08	6.61	5.62	8.7	6.9	35.00338139	33.58226621	61.83722614	56.52622723	M5	0.6	0.6	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.243	34	274	45	0.164233577	9qF3	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr9	106155782	106155782	A	G	ENSMUST00000036382.12	1	ENSMUSG00000020258	missense	V/A	344	Glyctk	ENSMUST00000036382.12:c.1031T>C	ENSMUSP00000047761.6:p.Val344Ala	H-2-Kb	9	10	2	RAARFYGLL	RVARFYGLL	NetMHC	16.87	23.3	1.381	65	0.292	71.279	81.97	1.15	23.3	16.87	21.8	17.5	140.6403699	125.0575741	181.6561058	157.1267038	M5	0.857142857	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.287	65	0	0	NA	9qF1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	sgMsh2	cell line
chr9	108305809	108305809	G	T	ENSMUST00000044725.8	1	ENSMUSG00000039461	missense	L/M	46	Tcta	ENSMUST00000044725.8:c.136C>A	ENSMUSP00000045063.7:p.Leu46Met	H-2-Kb	9	4	8	VTLFKLLML	VTLFKLLLL	SMMPMBEC	114.354	105.743	0.925	38	0.184	118.955	110.396	0.928	115.05	116.61	125.2	121.3	101.8849414	123.9110394	105.7426037	114.3536418	M5	2.285714286	2.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.158	38	9	3	0.333333333	9qF1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.669936017	sgMsh2	cell line
chrX	86747655	86747655	G	A	ENSMUST00000113966.7	5	ENSMUSG00000052372	missense	P/S	560	Il1rapl1	ENSMUST00000113966.7:c.1678C>T	ENSMUSP00000109599.1:p.Pro560Ser	H-2-Kb	9	10	2	MSFKRIEPI	MPFKRIEPI	NetMHCpan	58.3	2180.6	37.403	76	0.592	177.366	2262.711	12.757	4631.31	173.91	2180.6	58.3	2344.822647	233.4049166	1946.480243	180.8214719	M5	-0.242857143	-0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.597	76	0	0	NA	XqC1	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	sgMsh2	cell line
chrX	9849913	9849913	T	C	ENSMUST00000057113.2	NA	ENSMUSG00000048994	missense	S/P	55	H2al3	ENSMUST00000057113.2:c.163T>C	ENSMUSP00000052025.1:p.Ser55Pro	H-2-Kb	9	6	6	LNYVTPSIL	LNYVTSSIL	SMM	217.325	118.334	0.545	141	0.461	286.985	138.425	0.482	151.65	320.37	125.2	253.6	118.334124	217.325156	242.8007366	383.9281887	M5	1.157142857	1.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.473	141	0	0	NA	XqA1.1	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	sgMsh2	cell line
chrX	101673545	101673545	GA	G	ENSMUST00000044475.4	1	ENSMUSG00000034160	FS	K/X	757	Ogt	ENSMUST00000044475.4:c.2271del	ENSMUSP00000045409.4:p.Lys757AsnfsTer23	H-2-Kb	9	22	0	VTQLLICPL	NA	NetMHCpan	324.4	NA	NA	65	0.492	478.008	NA	NA	NA	401.25	NA	324.4	NA	554.7662088	NA	602.9065471	M5	1.9	2.085714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.486	65	131	0	0	XqD	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	sgMsh2	cell line
chr1	85579187	85579187	CT	C	ENSMUST00000093508.6	1	ENSMUSG00000070034	FS	K/X	385	Sp110	ENSMUST00000093508.6:c.1154del	ENSMUSP00000091226.6:p.Lys385SerfsTer13	H-2-Db	9	11	1	SAFRMRQEI	NA	SMMPMBEC	212.114	NA	NA	52	0.115	246.936	NA	NA	NA	356.88	NA	263.4	NA	230.4729708	NA	212.1143253	M6_p20	-0.971428571	-0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.113	52	0	0	NA	1qC5	chr1-85027661-85662926	7.35797826	5.35797826	2	0.93	4.367554902	NA	1	0.530681402	sgMsh2	cell line
chr1	26683454	26683454	T	A	ENSMUST00000097801.3	1	ENSMUSG00000073722	missense	T/S	882	4931408C20Rik	ENSMUST00000097801.3:c.2644A>T	ENSMUSP00000095410.3:p.Thr882Ser	H-2-Db	9	11	1	SAVELQVLI	TAVELQVLI	SMM	277.089	572.295	2.065	215	0.191	359.953	1249.888	3.472	1927.48	412.6	2926.1	1007.5	572.2950638	277.089456	515.9053125	307.3052643	M6_p20	1.928571429	1.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe	3	0.186	215	0	0	NA	1qA5	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.87351098	sgMsh2	cell line
chr1	4352795	4352795	T	C	ENSMUST00000027032.5	1	ENSMUSG00000025900	missense	M/V	11	Rp1	ENSMUST00000027032.5:c.31A>G	ENSMUSP00000027032.4:p.Met11Val	H-2-Kb	8	7	5	TSFSVIHL	TSFSMIHL	NetMHC	20.73	12.72	0.614	147	0.17	35.302	20.485	0.58	12.72	20.73	14.5	31	29.90473787	40.43337559	26.4691503	39.60408646	M6_p20	1.5	1.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.156	147	0	0	NA	1qA1	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.732622113	sgMsh2	cell line
chr1	84912361	84912361	C	A	ENSMUST00000027422.6	1	ENSMUSG00000026220	missense	A/S	408	Slc16a14	ENSMUST00000027422.6:c.1222G>T	ENSMUSP00000027422.5:p.Ala408Ser	H-2-Kb	8	6	6	LMHTYSSL	LMHTYASL	NetMHC	32.78	13.28	0.405	119	0.109	74.006	33.853	0.457	13.28	32.78	20.2	35.1	63.64144033	143.7937467	47.50507412	112.911974	M6_p20	-0.157142857	-0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.129	119	0	0	NA	1qC5	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.605822132	sgMsh2	cell line
chr1	55078678	55078678	T	A	ENSMUST00000027123.14	1	ENSMUSG00000025980	missense	I/F	474	Hspd1	ENSMUST00000027123.14:c.1420A>T	ENSMUSP00000027123.8:p.Ile474Phe	H-2-Kb	8	7	5	RALKFPAM	RALKIPAM	NetMHC	57.84	5027.16	86.915	77	0.143	145.525	5762.283	39.597	5027.16	57.84	1724.8	71.9	6914.16915	219.1492557	6497.405923	259.8603386	M6_p20	0.942857143	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.13	77	0	0	NA	1qC1.2	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.610518427	sgMsh2	cell line
chr1	54988042	54988042	T	C	ENSMUST00000027127.13	1	ENSMUSG00000025982	missense	N/S	1218	Sf3b1	ENSMUST00000027127.13:c.3653A>G	ENSMUSP00000027127.7:p.Asn1218Ser	H-2-Kb	8	5	7	LNYVWPSV	LNYVWPNV	NetMHCpan	41.5	29.8	0.718	240	0.087	120.034	49.952	0.416	24.5	79.84	29.8	41.5	75.46403103	185.2422298	70.10354824	160.228586	M6_p20	0.042857143	0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.091	240	0	0	NA	1qC1.2	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.427362899	sgMsh2	cell line
chr1	25117350	25117350	C	T	ENSMUST00000151309.7	1	ENSMUSG00000033569	missense	V/I	1043	Adgrb3	ENSMUST00000151309.7:c.3127G>A	ENSMUSP00000116231.1:p.Val1043Ile	H-2-Kb	8	8	4	GILIFNKL	GILVFNKL	SMMPMBEC	210.252	176.905	0.841	153	0.118	288.696	261.073	0.904	271	383.34	268.2	301.5	253.9451951	275.892567	176.9049561	210.2519343	M6_p20	1.714285714	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.132	153	0	0	NA	1qA5	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.619911018	sgMsh2	cell line
chr1	81241326	81241326	A	G	ENSMUST00000068275.11	1	ENSMUSG00000054976	missense	I/M	354	Nyap2	ENSMUST00000068275.11:c.1062A>G	ENSMUSP00000065468.5:p.Ile354Met	H-2-Kb	8	11	1	MPPPFPNL	IPPPFPNL	SMM	119.878	59.943	0.5	94	0.17	336.945	97.636	0.29	100.05	467	442.6	658.9	59.94321055	119.8781411	95.22259222	206.8902384	M6_p20	-0.471428571	-0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.208	94	0	0	NA	1qC5	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.976829483	sgMsh2	cell line
chr1	4347311	4347311	A	G	ENSMUST00000027032.5	1	ENSMUSG00000025900	missense	C/R	1193	Rp1	ENSMUST00000027032.5:c.3577T>C	ENSMUSP00000027032.4:p.Cys1193Arg	H-2-Kb	8	9	3	VNRTASSL	VNCTASSL	SMM	211.709	249.31	1.178	290	0.138	418.183	628.434	1.503	1220.97	528.94	969.3	728.2	249.310173	211.7093311	287.5676312	307.4255792	M6_p20	-0.671428571	-0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.146	290	0	0	NA	1qA1	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.685659157	sgMsh2	cell line
chr1	25117350	25117350	C	T	ENSMUST00000151309.7	1	ENSMUSG00000033569	missense	V/I	1043	Adgrb3	ENSMUST00000151309.7:c.3127G>A	ENSMUSP00000116231.1:p.Val1043Ile	H-2-Kb	9	7	5	IGILIFNKL	IGILVFNKL	NetMHCpan	46.9	53.6	1.143	153	0.118	218.729	255.566	1.168	109.11	103.07	53.6	46.9	553.4902819	448.8590645	402.0221668	334.3874735	M6_p20	1.714285714	2.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.132	153	0	0	NA	1qA5	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.619911018	sgMsh2	cell line
chr1	26687339	26687339	C	T	ENSMUST00000097801.3	1	ENSMUSG00000073722	missense	A/T	30	4931408C20Rik	ENSMUST00000097801.3:c.88G>A	ENSMUSP00000095410.3:p.Ala30Thr	H-2-Kb	9	8	4	ISFTIMCGV	ISFAIMCGV	NetMHCpan	74.6	91	1.22	709	0.028	250.461	298.272	1.191	128.54	108.05	91	74.6	533.469998	476.5516746	468.0044688	392.8710251	M6_p20	2.114285714	2.114285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.032	709	0	0	NA	1qA5	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.150281459	sgMsh2	cell line
chr1	5916369	5916369	A	G	ENSMUST00000044180.4	NA	ENSMUSG00000033774	missense	Y/H	309	Npbwr1	ENSMUST00000044180.4:c.925T>C	ENSMUSP00000046233.4:p.Tyr309His	H-2-Kb	9	6	6	LNPFLHAFL	LNPFLYAFL	NetMHCpan	98	28.5	0.291	106	0.132	405.724	118.863	0.293	40.37	181.58	28.5	98	212.3782315	743.2073569	197.3558481	629.8686601	M6_p20	1.457142857	1.457142857	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.132	106	0	0	NA	1qA1	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.619911018	sgMsh2	cell line
chr1	85579187	85579187	CT	C	ENSMUST00000093508.6	1	ENSMUSG00000070034	FS	K/X	385	Sp110	ENSMUST00000093508.6:c.1154del	ENSMUSP00000091226.6:p.Lys385SerfsTer13	H-2-Kb	9	11	1	SAFRMRQEI	NA	NetMHC	222.54	NA	NA	52	0.115	380.963	NA	NA	NA	222.54	NA	325.3	NA	436.6264089	NA	527.5334467	M6_p20	-0.971428571	-0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.113	52	0	0	NA	1qC5	chr1-85027661-85662926	7.35797826	5.35797826	2	0.93	4.367554902	NA	1	0.530681402	sgMsh2	cell line
chr1	62344084	62344084	A	C	ENSMUST00000075374.9	5	ENSMUSG00000052062	missense	E/A	779	Pard3b	ENSMUST00000075374.9:c.2336A>C	ENSMUSP00000074837.3:p.Glu779Ala	H-2-Kb	9	9	3	CNASFRAAI	CNESFRAAI	NetMHCpan	230.4	1751.1	7.6	32	0.094	372.631	1474.805	3.958	925.35	239.31	1751.1	230.4	1300.498932	505.9527957	1649.111423	995.9785837	M6_p20	1.057142857	1.057142857	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.136	32	0	0	NA	1qC2	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.638696201	sgMsh2	cell line
chr1	54988042	54988042	T	C	ENSMUST00000027127.13	1	ENSMUSG00000025982	missense	N/S	1218	Sf3b1	ENSMUST00000027127.13:c.3653A>G	ENSMUSP00000027127.7:p.Asn1218Ser	H-2-Kb	9	11	1	SVFETSPHV	NVFETSPHV	NetMHC	281.5	2163.05	7.684	240	0.087	438.894	2456.263	5.596	2163.05	281.5	3287.7	519.6	1545.645878	358.1871488	2749.476424	685.8829388	M6_p20	-0.4	-0.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.091	240	0	0	NA	1qC1.2	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.427362899	sgMsh2	cell line
chr1	75315970	75315970	G	A	ENSMUST00000185797.6	1	ENSMUSG00000026209	missense	T/I	135	Dnpep	ENSMUST00000185797.6:c.404C>T	ENSMUSP00000140864.1:p.Thr135Ile	H-2-Kb	9	4	8	TWFDRDLIL	TWFDRDLTL	SMM	114.844	102.828	0.895	129	0.225	213.694	153.769	0.72	190.52	289.27	390.9	776.8	102.8276712	114.8444468	117.0172803	138.1179106	M6_p20	0.485714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.231	129	0	0	NA	1qC4	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr1	54988042	54988042	T	C	ENSMUST00000027127.13	1	ENSMUSG00000025982	missense	N/S	1218	Sf3b1	ENSMUST00000027127.13:c.3653A>G	ENSMUSP00000027127.7:p.Asn1218Ser	H-2-Kb	9	5	7	LNYVWPSVF	LNYVWPNVF	NetMHCpan	129	276.3	2.142	240	0.087	192.609	263.817	1.37	587.37	373.41	276.3	129	202.3531643	176.6485187	251.3332806	208.5691158	M6_p20	0.942857143	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.091	240	0	0	NA	1qC1.2	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.427362899	sgMsh2	cell line
chr1	9745771	9745771	A	G	ENSMUST00000057438.6	1	ENSMUSG00000045210	missense	F/L	796	Vcpip1	ENSMUST00000057438.6:c.2386T>C	ENSMUSP00000051248.6:p.Phe796Leu	H-2-Kb	9	3	9	VTLKPSTTL	VTLKPSTTF	NetMHC	417.94	963.6	2.306	248	0.065	497.577	1098.707	2.208	963.6	417.94	1895.1	515.3	809.3008565	479.854973	1233.81487	713.2634994	M6_p20	-0.014285714	0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.078	248	0	0	NA	1qA2	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.366311056	sgMsh2	cell line
chr1	82453791	82453791	A	G	ENSMUST00000087050.6	1	ENSMUSG00000067158	missense	Y/H	1591	Col4a4	ENSMUST00000087050.6:c.4771T>C	ENSMUSP00000084282.5:p.Tyr1591His	H-2-Kb	9	7	5	LWIGHSFLM	LWIGYSFLM	SMM	166.001	133.079	0.802	52	0.115	372.616	310.628	0.834	364.66	422.94	715	1156.1	133.0791444	166.0007308	256.5960697	322.2923521	M6_p20	1.228571429	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.155	52	0	0	NA	1qC5	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.727925817	sgMsh2	cell line
chr1	92888774	92888774	G	A	ENSMUST00000160548.7	2	ENSMUSG00000034212	missense	P/L	206	Ankmy1	ENSMUST00000160548.7:c.617C>T	ENSMUSP00000123787.1:p.Pro206Leu	H-2-Db	9	5	7	FSLVNYLEF	FSLVNYPEF	NetMHC	9	11.11	1.234	91	0.077	26.2	23.688	0.904	11.11	9	28.6	33.9	22.6266365	24.24487783	24.74970347	28.15593799	M6_p20	0.9	1.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.085	91	0	0	NA	1qD	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.399185125	sgMsh2	cell line
chr1	165539831	165539831	A	G	ENSMUST00000027852.14	1	ENSMUSG00000026567	missense	T/A	557	Adcy10	ENSMUST00000027852.14:c.1669A>G	ENSMUSP00000027852.8:p.Thr557Ala	H-2-Db	9	4	8	SFHQNFYAI	SFHQNFYTI	SMM	105.104	62.176	0.592	183	0.268	167.108	96.911	0.58	73.99	141.21	379.5	647.3	62.17560216	105.1041828	119.8312253	193.0056399	M6_p20	-0.342857143	-0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.27	183	0	0	NA	1qH2.3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	2	1	sgMsh2	cell line
chr1	92888774	92888774	G	A	ENSMUST00000160548.7	2	ENSMUSG00000034212	missense	P/L	206	Ankmy1	ENSMUST00000160548.7:c.617C>T	ENSMUSP00000123787.1:p.Pro206Leu	H-2-Db	10	5	7	FSLVNYLEFL	FSLVNYPEFL	NetMHC	7.54	7.11	0.943	91	0.077	369.027	511.456	1.386	7.11	7.54	12.1	13.2	1023.882217	724.853099	1010.811094	725.5544332	M6_p20	0.9	1.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.085	91	0	0	NA	1qD	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.399185125	sgMsh2	cell line
chr1	127412243	127412243	G	T	ENSMUST00000038361.10	1	ENSMUSG00000036155	missense	V/L	454	Mgat5	ENSMUST00000038361.10:c.1360G>T	ENSMUSP00000038359.4:p.Val454Leu	H-2-Kb	8	4	8	QSLVYGKL	QSLVYGKV	NetMHC	15.26	75.8	4.967	127	0.071	52.362	246.565	4.709	75.8	15.26	265.7	39.6	232.6697911	65.12383991	260.4593785	71.90183929	M6_p20	0.771428571	0.771428571	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.086	127	0	0	NA	1qE3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.403881421	sgMsh2	cell line
chr1	128364313	128364313	A	G	ENSMUST00000027602.14	1	ENSMUSG00000026356	missense	V/A	476	Dars	ENSMUST00000027602.14:c.1427T>C	ENSMUSP00000027602.8:p.Val476Ala	H-2-Kb	8	11	1	ATMLFLGL	VTMLFLGL	NetMHCpan	13.4	5.5	0.41	152	0.072	28.635	8.869	0.31	5.27	15.32	5.5	13.4	14.47904774	54.54312289	12.23883275	41.95077612	M6_p20	2.142857143	2.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.079	152	0	0	NA	1qE3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.371007352	sgMsh2	cell line
chr1	152855898	152855898	T	C	ENSMUST00000043560.14	1	ENSMUSG00000042772	missense	R/G	379	Smg7	ENSMUST00000043560.14:c.1135A>G	ENSMUSP00000041241.8:p.Arg379Gly	H-2-Kb	8	5	7	VSMDWLGL	VSMDWLRL	NetMHCpan	34.7	24.7	0.712	238	0.055	70.049	45.03	0.643	38.45	50.82	24.7	34.7	69.30107956	116.611129	51.61072977	89.27708467	M6_p20	0.557142857	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.061	238	0	0	NA	1qG3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.286474031	sgMsh2	cell line
chr1	132014588	132014588	A	G	ENSMUST00000086556.11	1	ENSMUSG00000026436	missense	Y/C	66	Elk4	ENSMUST00000086556.11:c.197A>G	ENSMUSP00000083743.5:p.Tyr66Cys	H-2-Kb	8	6	6	RALRYCYV	RALRYYYV	NetMHC	53.18	33.42	0.628	75	0.12	95.601	68.626	0.718	33.42	53.18	49.2	71.6	88.05215715	119.6024291	102.2680559	132.3548926	M6_p20	0.742857143	0.742857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.122	75	0	0	NA	1qE4	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.572948062	sgMsh2	cell line
chr1	165551108	165551108	T	C	ENSMUST00000027852.14	1	ENSMUSG00000026567	missense	M/T	822	Adcy10	ENSMUST00000027852.14:c.2465T>C	ENSMUSP00000027852.8:p.Met822Thr	H-2-Kb	8	11	1	TSLSHQML	MSLSHQML	NetMHC	75.85	50.29	0.663	240	0.075	115.039	86.865	0.755	50.29	75.85	102.4	165.3	72.40023903	101.3304567	101.3304567	128.7478543	M6_p20	0.171428571	0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.076	240	0	0	NA	1qH2.3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.356918465	sgMsh2	cell line
chr1	151433827	151433827	A	G	ENSMUST00000065625.11	1	ENSMUSG00000053286	missense	D/G	87	Trmt1l	ENSMUST00000065625.11:c.260A>G	ENSMUSP00000068309.5:p.Asp87Gly	H-2-Kb	8	5	7	IQRRLAGL	IQRRLADL	NetMHC	80.71	561.26	6.954	133	0.068	106.97	428.102	4.002	561.26	80.71	1249.6	337.9	287.5676312	105.8619769	294.9442949	108.0786721	M6_p20	-0.5	-0.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.08	133	0	0	NA	1qG1	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.375703647	sgMsh2	cell line
chr1	172290712	172290712	T	A	ENSMUST00000085913.10	1	ENSMUSG00000007097	missense	I/F	132	Atp1a2	ENSMUST00000085913.10:c.394A>T	ENSMUSP00000083077.4:p.Ile132Phe	H-2-Kb	8	9	3	LGFVLAAV	LGIVLAAV	NetMHC	85.07	805.62	9.47	231	0.1	128.59	785.379	6.108	805.62	85.07	822.4	123.6	765.1384027	157.666708	633.4903447	133.5795574	M6_p20	2.6	2.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.097	231	0	0	NA	1qH3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.455540673	sgMsh2	cell line
chr1	139733178	139733178	CT	C	ENSMUST00000111989.8	1	ENSMUSG00000070594	FS	R/X	591	Gm4788	ENSMUST00000111989.8:c.1771del	ENSMUSP00000107620.2:p.Arg591GlyfsTer32	H-2-Kb	8	30	0	VMMVSGYL	NA	NetMHCpan	76.9	NA	NA	173	0.214	186.839	NA	NA	NA	91.36	NA	76.9	NA	327.8989304	NA	282.3189304	M6_p20	1.328571429	1.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.211	173	0	0	NA	1qF	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.99091837	sgMsh2	cell line
chr1	139423488	139423488	A	G	ENSMUST00000039867.9	1	ENSMUSG00000033964	missense	Y/C	113	Zbtb41	ENSMUST00000039867.9:c.338A>G	ENSMUSP00000045570.7:p.Tyr113Cys	H-2-Kb	8	9	3	SSCFHACL	SSYFHACL	SMM	69.461	5.898	0.085	261	0.088	99.305	5.649	0.057	4.17	129.15	5.4	160.4	5.89847849	69.46083504	6.978145169	69.46083504	M6_p20	1.342857143	1.342857143	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.092	261	0	0	NA	1qE4	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.432059195	sgMsh2	cell line
chr1	135167045	135167045	T	C	ENSMUST00000027682.8	1	ENSMUSG00000026424	missense	I/V	154	Gpr37l1	ENSMUST00000027682.8:c.460A>G	ENSMUSP00000027682.8:p.Ile154Val	H-2-Kb	8	11	1	VVWHSYYL	IVWHSYYL	NetMHCpan	50.2	54.3	1.082	197	0.157	124.72	127.484	1.022	148.38	135.33	54.3	50.2	137.0061303	128.4517425	117.9614222	120.9873599	M6_p20	0.071428571	0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.146	197	0	0	NA	1qE4	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.685659157	sgMsh2	cell line
chr1	151351713	151351713	T	C	ENSMUST00000023918.12	1	ENSMUSG00000023150	missense	Y/H	91	Ivns1abp	ENSMUST00000023918.12:c.271T>C	ENSMUSP00000023918.6:p.Tyr91His	H-2-Kb	8	5	7	VLLNYAHT	VLLNYAYT	SMMPMBEC	192.637	198.034	1.028	247	0.101	277.822	339.303	1.221	371.18	233.73	1146.3	1299.8	307.4255792	321.9141004	198.0341096	192.6371303	M6_p20	0.1	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.111	247	0	0	NA	1qG1	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.521288811	sgMsh2	cell line
chr1	154633618	154633618	A	G	ENSMUST00000187541.6	1	ENSMUSG00000004110	missense	L/P	297	Cacna1e	ENSMUST00000187541.6:c.890T>C	ENSMUSP00000140937.1:p.Leu297Pro	H-2-Kb	8	8	4	DNIPFAVL	DNILFAVL	SMM	178.131	93.485	0.525	186	0.086	412.973	165.678	0.401	220.76	608.34	374.2	572	93.48458404	178.1312026	110.5961477	253.9451951	M6_p20	1.714285714	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.082	186	0	0	NA	1qG3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.385096239	sgMsh2	cell line
chr1	119527237	119527237	T	C	ENSMUST00000183952.1	NA	ENSMUSG00000098923	missense	Y/H	243	Tmem185b	ENSMUST00000183952.1:c.727T>C	ENSMUSP00000139021.1:p.Tyr243His	H-2-Kb	8	11	1	HISIFIPL	YISIFIPL	SMMPMBEC	277.805	143.463	0.516	306	0.19	366.678	142.732	0.389	159.19	639.82	142	423.8	132.0504848	309.5565516	143.4630303	277.8049629	M6_p20	2.528571429	2.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.191	306	0	0	NA	1qE2.3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.896992458	sgMsh2	cell line
chr1	151351713	151351713	T	C	ENSMUST00000023918.12	1	ENSMUSG00000023150	missense	Y/H	91	Ivns1abp	ENSMUST00000023918.12:c.271T>C	ENSMUSP00000023918.6:p.Tyr91His	H-2-Kb	9	7	5	LNYAHTAQL	LNYAYTAQL	NetMHCpan	10.4	5.2	0.5	247	0.101	31.415	21.341	0.679	6.52	17.41	5.2	10.4	48.31811688	60.27122243	36.16179668	45.42030017	M6_p20	-0.185714286	-0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.111	247	0	0	NA	1qG1	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.521288811	sgMsh2	cell line
chr1	151433827	151433827	A	G	ENSMUST00000065625.11	1	ENSMUSG00000053286	missense	D/G	87	Trmt1l	ENSMUST00000065625.11:c.260A>G	ENSMUSP00000068309.5:p.Asp87Gly	H-2-Kb	9	4	8	SIQRRLAGL	SIQRRLADL	NetMHC	38.6	168.94	4.377	133	0.068	266.454	605.833	2.274	168.94	38.6	719	212.2	650.2943789	320.7081525	561.3710342	365.8053055	M6_p20	-0.5	-0.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.08	133	0	0	NA	1qG1	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.375703647	sgMsh2	cell line
chr1	92888774	92888774	G	A	ENSMUST00000160548.7	2	ENSMUSG00000034212	missense	P/L	206	Ankmy1	ENSMUST00000160548.7:c.617C>T	ENSMUSP00000123787.1:p.Pro206Leu	H-2-Kb	9	8	4	VNYLEFLAF	VNYPEFLAF	SMM	35.003	58.899	1.683	91	0.077	45.511	69.006	1.516	92.65	58.66	53.7	42.8	58.89928191	35.00338139	79.11339102	48.22253089	M6_p20	1.457142857	1.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.085	91	0	0	NA	1qD	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.399185125	sgMsh2	cell line
chr1	92888774	92888774	G	A	ENSMUST00000160548.7	2	ENSMUSG00000034212	missense	P/L	206	Ankmy1	ENSMUST00000160548.7:c.617C>T	ENSMUSP00000123787.1:p.Pro206Leu	H-2-Kb	9	3	9	SGFSLVNYL	SGFSLVNYP	NetMHC	71.49	16264.67	227.51	91	0.077	199.561	5858.469	29.357	16264.67	71.49	8516.2	74.7	1496.614677	324.4217779	3200.737072	434.7604204	M6_p20	1.285714286	1.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.085	91	0	0	NA	1qD	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.399185125	sgMsh2	cell line
chr1	132938193	132938193	A	G	ENSMUST00000027706.3	1	ENSMUSG00000026443	missense	H/R	332	Lrrn2	ENSMUST00000027706.3:c.995A>G	ENSMUSP00000027706.3:p.His332Arg	H-2-Kb	9	8	4	RAFRHLPQM	RAFHHLPQM	NetMHCpan	47.9	70	1.461	251	0.068	112.066	133.23	1.189	139.33	75.11	70	47.9	150.006473	168.310031	127.1305717	149.021867	M6_p20	-0.614285714	-0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.074	251	0	0	NA	1qE4	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.347525874	sgMsh2	cell line
chr1	133658840	133658840	T	G	ENSMUST00000179598.3	1	ENSMUSG00000094410	missense	N/T	253	Gm38394	ENSMUST00000179598.3:c.758A>C	ENSMUSP00000136026.1:p.Asn253Thr	H-2-Kb	9	10	2	STIVKHALI	SNIVKHALI	NetMHC	100.82	69.65	0.691	174	0.126	310.42	175.923	0.567	69.65	100.82	127.4	281.8	224.4450336	352.4601324	231.8729034	339.0392667	M6_p20	1.671428571	1.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.132	174	0	0	NA	1qE4	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.619911018	sgMsh2	cell line
chr1	116157474	116157474	C	A	ENSMUST00000043725.8	2	ENSMUSG00000070695	missense	P/T	381	Cntnap5a	ENSMUST00000043725.8:c.1141C>A	ENSMUSP00000035732.8:p.Pro381Thr	H-2-Kb	9	5	7	SSYLMLTGT	SSYLMLPGT	NetMHC	112.24	148.49	1.323	466	0.142	189.714	178.614	0.941	148.49	112.24	320.2	244.5	151.0462682	166.0007308	206.1816449	213.4273146	M6_p20	0.914285714	0.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.153	466	0	0	NA	1qE2.3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.718533226	sgMsh2	cell line
chr1	110925087	110925087	A	T	ENSMUST00000094626.4	1	ENSMUSG00000047216	missense	Y/N	373	Cdh19	ENSMUST00000094626.4:c.1117T>A	ENSMUSP00000092210.3:p.Tyr373Asn	H-2-Kb	9	5	7	VFLLPYNIL	VFLLPYYIL	SMM	98.653	114.054	1.156	272	0.129	176.295	208.175	1.181	208.26	179.11	561.9	499.8	114.0538632	98.65293264	208.0894201	173.4802343	M6_p20	1.357142857	1.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.136	272	0	0	NA	1qE2.1	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.638696201	sgMsh2	cell line
chr1	123445299	123445299	A	G	ENSMUST00000112606.7	1	ENSMUSG00000036815	missense	I/T	204	Dpp10	ENSMUST00000112606.7:c.611T>C	ENSMUSP00000108225.1:p.Ile204Thr	H-2-Kb	9	3	9	LIYIFENNT	LIYIFENNI	NetMHC	184.51	25.12	0.136	168	0.321	233.18	68.152	0.292	25.12	184.51	41	757.3	95.3037523	221.8758325	112.5252535	244.4837509	M6_p20	-0.742857143	1.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.297	168	0	0	NA	1qE2.3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	2	1	sgMsh2	cell line
chr1	119527237	119527237	T	C	ENSMUST00000183952.1	NA	ENSMUSG00000098923	missense	Y/H	243	Tmem185b	ENSMUST00000183952.1:c.727T>C	ENSMUSP00000139021.1:p.Tyr243His	H-2-Kb	9	10	2	SHISIFIPL	SYISIFIPL	NetMHCpan	99	117	1.182	306	0.19	224.362	220.237	0.982	296.53	185.63	117	99	189.7186388	263.0934282	250.7552301	331.3217908	M6_p20	2.528571429	2.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.191	306	0	0	NA	1qE2.3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.896992458	sgMsh2	cell line
chr1	139733178	139733178	CT	C	ENSMUST00000111989.8	1	ENSMUSG00000070594	FS	R/X	591	Gm4788	ENSMUST00000111989.8:c.1771del	ENSMUSP00000107620.2:p.Arg591GlyfsTer32	H-2-Kb	9	20	0	MNMELHSAM	NA	NetMHCpan	174.7	NA	NA	173	0.214	314.32	NA	NA	NA	185.94	NA	174.7	NA	442.7004873	NA	477.8042407	M6_p20	0.271428571	0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.211	173	0	0	NA	1qF	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.99091837	sgMsh2	cell line
chr1	165551108	165551108	T	C	ENSMUST00000027852.14	1	ENSMUSG00000026567	missense	M/T	822	Adcy10	ENSMUST00000027852.14:c.2465T>C	ENSMUSP00000027852.8:p.Met822Thr	H-2-Kb	9	11	1	TSLSHQMLV	MSLSHQMLV	NetMHC	188.72	170.9	0.906	240	0.075	404.261	366.256	0.906	170.9	188.72	373.5	576.1	359.0128555	353.2726369	537.3410257	455.2500477	M6_p20	0.885714286	0.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.076	240	0	0	NA	1qH2.3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.356918465	sgMsh2	cell line
chr1	128364313	128364313	A	G	ENSMUST00000027602.14	1	ENSMUSG00000026356	missense	V/A	476	Dars	ENSMUST00000027602.14:c.1427T>C	ENSMUSP00000027602.8:p.Val476Ala	H-2-Kb	9	6	6	IGLERATML	IGLERVTML	NetMHCpan	169.6	134.8	0.795	152	0.072	303	226.99	0.749	136.11	195.56	134.8	169.6	457.2039776	492.1641774	317.8703353	410.4403034	M6_p20	0.371428571	0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.079	152	0	0	NA	1qE3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.371007352	sgMsh2	cell line
chr1	92888774	92888774	G	A	ENSMUST00000160548.7	2	ENSMUSG00000034212	missense	P/L	206	Ankmy1	ENSMUST00000160548.7:c.617C>T	ENSMUSP00000123787.1:p.Pro206Leu	H-2-Kb	9	5	7	FSLVNYLEF	FSLVNYPEF	SMM	257.105	213.85	0.832	91	0.077	306.405	239.375	0.781	213.83	294.94	264.9	404.6	213.850367	257.1046906	273.0549161	317.8703353	M6_p20	0.9	1.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.085	91	0	0	NA	1qD	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.399185125	sgMsh2	cell line
chr1	158572975	158572975	A	G	ENSMUST00000193042.5	1	ENSMUSG00000026587	missense	Q/R	524	Astn1	ENSMUST00000193042.5:c.1571A>G	ENSMUSP00000142322.1:p.Gln524Arg	H-2-Kb	9	8	4	TIFRRGFDL	TIFQRGFDL	NetMHCpan	180.2	304.1	1.688	368	0.166	346.875	421.912	1.216	601.62	363.19	304.1	180.2	507.1191374	472.1826226	336.7053368	330.5597718	M6_p20	-0.5	-6.34E-17	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.17	368	0	0	NA	1qH1	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.798370251	sgMsh2	cell line
chr1	127412243	127412243	G	T	ENSMUST00000038361.10	1	ENSMUSG00000036155	missense	V/L	454	Mgat5	ENSMUST00000038361.10:c.1360G>T	ENSMUSP00000038359.4:p.Val454Leu	H-2-Kb	9	6	6	LVYGKLDSF	LVYGKVDSF	SMM	278.042	542.138	1.95	127	0.071	372.202	726.824	1.953	911.51	463.7	1434.9	1078.9	542.1381881	278.0417415	480.0096849	280.704904	M6_p20	-0.471428571	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.086	127	0	0	NA	1qE3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.403881421	sgMsh2	cell line
chr1	135167045	135167045	T	C	ENSMUST00000027682.8	1	ENSMUSG00000026424	missense	I/V	154	Gpr37l1	ENSMUST00000027682.8:c.460A>G	ENSMUSP00000027682.8:p.Ile154Val	H-2-Kb	9	10	2	CVVWHSYYL	CIVWHSYYL	SMM	366.53	378.538	1.033	197	0.157	457.755	527.6	1.153	517.1	471.51	538.1	444	378.5384504	366.5303993	726.524058	713.2634994	M6_p20	0.071428571	0.671428571	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.146	197	0	0	NA	1qE4	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.685659157	sgMsh2	cell line
chr10	68778643	68778643	T	C	ENSMUST00000080995.7	1	ENSMUSG00000060044	missense	L/P	296	Tmem26	ENSMUST00000080995.7:c.887T>C	ENSMUSP00000079789.6:p.Leu296Pro	H-2-Db	9	5	7	FAVKNSPVM	FAVKNSLVM	NetMHC	8.71	9.25	1.062	184	0.054	25.374	27.679	1.091	9.25	8.71	9.8	10.7	46.62512402	43.51309752	45.5585612	40.04700113	M6_p20	0.071428571	0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.064	184	0	0	NA	10qB5.3	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.300562918	sgMsh2	cell line
chr10	5022126	5022126	T	A	ENSMUST00000215295.1	5	ENSMUSG00000096054	missense	I/F	8761	Syne1	ENSMUST00000215295.1:c.26281A>T	ENSMUSP00000150262.1:p.Ile8761Phe	H-2-Db	9	11	1	FGLTCLVPM	IGLTCLVPM	NetMHC	60.15	506.36	8.418	23	0.304	306.28	885.956	2.893	506.36	60.15	862.9	223.9	1229.192778	523.1424958	909.0128028	388.6601375	M6_p20	1.985714286	2.285714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.375	23	0	0	NA	10qA1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	2	1	sgMsh2	cell line
chr1	193240306	193240306	C	T	ENSMUST00000016338.14	1	ENSMUSG00000016194	missense	V/M	148	Hsd11b1	ENSMUST00000016338.14:c.442G>A	ENSMUSP00000016338.8:p.Val148Met	H-2-Db	9	10	2	YMVMSTAAL	YVVMSTAAL	NetMHC	125.99	1911.42	15.171	231	0.061	473.688	2143.091	4.524	1911.42	125.99	1809.3	404.6	2374.761503	542.7752049	2396.458982	603.3509488	M6_p20	1.714285714	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.066	231	0	0	NA	1qH6	chr1-176139660-195166209	4	2	2	0.93	4.367554902	NA	1	0.309955509	sgMsh2	cell line
chr10	59892714	59892714	G	T	ENSMUST00000146590.7	1	ENSMUSG00000020109	missense	R/M	168	Dnajb12	ENSMUST00000146590.7:c.503G>T	ENSMUSP00000122056.1:p.Arg168Met	H-2-Db	9	3	9	AVLSNPEKM	AVLSNPEKR	NetMHCpan	183.8	35737	194.434	136	0.088	216.309	25132.835	116.189	34826.64	209.97	35737	183.8	15439.02961	222.6486161	9387.933401	276.420342	M6_p20	-1.085714286	0.057142857	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.094	136	0	0	NA	10qB4	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.441451786	sgMsh2	cell line
chr1	175785577	175785577	T	C	ENSMUST00000094288.9	5	ENSMUSG00000026523	missense	W/R	683	Wdr64	ENSMUST00000094288.9:c.2047T>C	ENSMUSP00000091846.4:p.Trp683Arg	H-2-Db	9	6	6	GMIILRNFI	GMIILWNFI	NetMHC	388.34	346.85	0.893	306	0.105	486.579	380.934	0.783	346.85	388.34	1792.4	1581.3	409.8453386	511.2343188	352.0221572	461.9234392	M6_p20	1.728571429	1.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.1	306	0	0	NA	1qH3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.469629559	sgMsh2	cell line
chr10	68778643	68778643	T	C	ENSMUST00000080995.7	1	ENSMUSG00000060044	missense	L/P	296	Tmem26	ENSMUST00000080995.7:c.887T>C	ENSMUSP00000079789.6:p.Leu296Pro	H-2-Db	11	5	7	FAVKNSPVMAL	FAVKNSLVMAL	NetMHCpan	139.4	136.7	0.981	184	0.054	479.924	423.713	0.883	274.55	315.59	136.7	139.4	572.8751711	644.2582669	2605.313561	2641.557083	M6_p20	0.828571429	0.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.064	184	0	0	NA	10qB5.3	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.300562918	sgMsh2	cell line
chr10	50754122	50754122	G	T	ENSMUST00000035606.9	5	ENSMUSG00000038774	missense	S/I	1769	Ascc3	ENSMUST00000035606.9:c.5306G>T	ENSMUSP00000036726.8:p.Ser1769Ile	H-2-Kb	8	8	4	MNPIYYSL	MNPSYYSL	NetMHC	10.83	12.27	1.133	193	0.259	32.613	36.465	1.118	12.27	10.83	28.9	21.7	44.02911945	43.52512229	62.62388407	64.23030732	M6_p20	-0.028571429	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.266	193	0	0	NA	10qB3	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr1	193240306	193240306	C	T	ENSMUST00000016338.14	1	ENSMUSG00000016194	missense	V/M	148	Hsd11b1	ENSMUST00000016338.14:c.442G>A	ENSMUSP00000016338.8:p.Val148Met	H-2-Kb	8	5	7	VNFLSYMV	VNFLSYVV	NetMHCpan	33.3	58.8	1.766	231	0.061	72.069	139.342	1.933	115.1	42.34	58.8	33.3	163.5836898	101.7981768	247.0244836	154.0777756	M6_p20	1.014285714	1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.066	231	0	0	NA	1qH6	chr1-176139660-195166209	4	2	2	0.93	4.367554902	NA	1	0.309955509	sgMsh2	cell line
chr10	20357669	20357669	A	C	ENSMUST00000169712.2	1	ENSMUSG00000019992	missense	N/T	328	Mtfr2	ENSMUST00000169712.2:c.983A>C	ENSMUSP00000129315.1:p.Asn328Thr	H-2-Kb	8	6	6	VSLISTAL	VSLISNAL	NetMHC	49.7	94.67	1.905	120	0.108	79.504	112.755	1.418	94.67	49.7	172.8	90.5	87.64759423	68.50779666	130.8398387	93.0550614	M6_p20	1.657142857	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.139	120	0	0	NA	10qA3	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.652785087	sgMsh2	cell line
chr1	181054895	181054895	TA	T	ENSMUST00000036819.6	1	ENSMUSG00000038768	FS	Y/X	74	9130409I23Rik	ENSMUST00000036819.6:c.221del	ENSMUSP00000042889.6:p.Tyr74LeufsTer11	H-2-Kb	8	6	6	VIFCALYL	VIFCAYVF	SMM	42.047	997.103	23.714	140	0.157	53.689	801.466	14.928	605.83	70.34	352.4	50	997.1029474	42.04748265	1126.522836	57.37728575	M6_p20	2.557142857	2.614285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.186	140	0	0	NA	1qH4	chr1-176139660-195166209	4	2	2	0.93	4.367554902	NA	1	0.87351098	sgMsh2	cell line
chr1	194780562	194780562	A	G	ENSMUST00000027952.11	1	ENSMUSG00000026640	missense	H/R	879	Plxna2	ENSMUST00000027952.11:c.2636A>G	ENSMUSP00000027952.5:p.His879Arg	H-2-Kb	8	8	4	VTIRGVNL	VTIHGVNL	NetMHC	74.49	317.58	4.263	232	0.185	88.972	181.985	2.045	317.58	74.49	167.3	91.3	196.6708524	105.3755853	154.0777756	86.64430052	M6_p20	0.485714286	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.191	232	0	0	NA	1qH6	chr1-176139660-195166209	4	2	2	0.93	4.367554902	NA	1	0.896992458	sgMsh2	cell line
chr1	173203457	173203457	A	C	ENSMUST00000216603.1	5	ENSMUSG00000046643	missense	T/P	34	Olfr218	ENSMUST00000216603.1:c.100A>C	ENSMUSP00000150815.1:p.Thr34Pro	H-2-Kb	8	7	5	IVFLPLYL	IVFLTLYL	NetMHCpan	37.9	34.2	0.902	271	0.041	67.83	56.074	0.827	58.97	83.69	34.2	37.9	63.93519587	65.87793843	53.17897962	69.78145169	M6_p20	2.214285714	2.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.058	271	0	0	NA	1qH3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.272385144	sgMsh2	cell line
chr1	173203457	173203457	A	C	ENSMUST00000216603.1	5	ENSMUSG00000046643	missense	T/P	34	Olfr218	ENSMUST00000216603.1:c.100A>C	ENSMUSP00000150815.1:p.Thr34Pro	H-2-Kb	8	5	7	FFIVFLPL	FFIVFLTL	SMM	27.909	69.781	2.5	271	0.041	68.58	190.089	2.772	300.61	106.77	1046.7	483.3	69.78145169	27.90872523	79.56828547	30.39065077	M6_p20	2.9	2.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.058	271	0	0	NA	1qH3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.272385144	sgMsh2	cell line
chr10	64088725	64088725	T	C	ENSMUST00000105439.1	1	ENSMUSG00000042846	missense	N/S	221	Lrrtm3	ENSMUST00000105439.1:c.662A>G	ENSMUSP00000101079.1:p.Asn221Ser	H-2-Kb	8	11	1	SLALFPRL	NLALFPRL	NetMHCpan	46.8	449.4	9.603	94	0.16	114.638	781.235	6.815	1915.21	108.01	449.4	46.8	770.4420888	121.2662646	792.027024	139.5532644	M6_p20	1.414285714	1.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.172	94	0	0	NA	10qB4	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.807762842	sgMsh2	cell line
chr1	194796987	194796987	A	G	ENSMUST00000027952.11	1	ENSMUSG00000026640	missense	T/A	1319	Plxna2	ENSMUST00000027952.11:c.3955A>G	ENSMUSP00000027952.5:p.Thr1319Ala	H-2-Kb	8	10	2	RAYAMRVL	RTYAMRVL	NetMHC	151.2	152.87	1.011	117	0.197	169.91	135.28	0.796	152.87	151.2	159.2	187.8	99.48096742	153.7234066	117.6901185	186.0972691	M6_p20	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.219	117	0	0	NA	1qH6	chr1-176139660-195166209	4	2	2	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr1	174836908	174836908	G	A	ENSMUST00000055294.3	1	ENSMUSG00000050069	missense	P/L	125	Grem2	ENSMUST00000055294.3:c.374C>T	ENSMUSP00000049640.3:p.Pro125Leu	H-2-Kb	8	4	8	QSCAFCKL	QSCAFCKP	SMM	117.961	2855.88	24.21	73	0.137	147.089	12242.245	83.23	25277.15	156.54	20913.9	503.9	2855.880296	117.9614222	3570.590129	137.6385219	M6_p20	1.242857143	1.242857143	TRUE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.133	73	0	0	NA	1qH3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.624607314	sgMsh2	cell line
chr1	191058906	191058906	T	C	ENSMUST00000110893.9	1	ENSMUSG00000026632	missense	N/S	57	Tatdn3	ENSMUST00000110893.9:c.170A>G	ENSMUSP00000106518.3:p.Asn57Ser	H-2-Kb	8	11	1	SGFVLPCL	NGFVLPCL	SMMPMBEC	163.961	930.551	5.675	191	0.147	168.271	1269.873	7.547	5091.47	186.82	1466.4	167.6	1073.346637	168.9429215	930.550614	163.9607892	M6_p20	2.157142857	2.157142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.138	191	0	0	NA	1qH6	chr1-176139660-195166209	4	2	2	0.93	4.367554902	NA	1	0.648088792	sgMsh2	cell line
chr1	175785577	175785577	T	C	ENSMUST00000094288.9	5	ENSMUSG00000026523	missense	W/R	683	Wdr64	ENSMUST00000094288.9:c.2047T>C	ENSMUSP00000091846.4:p.Trp683Arg	H-2-Kb	8	11	1	RNFIAASV	WNFIAASV	NetMHCpan	116.2	398.6	3.43	306	0.105	211.246	344.08	1.629	485.5	218.91	398.6	116.2	274.6249558	203.5822922	289.5609548	251.6170116	M6_p20	1.542857143	1.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.1	306	0	0	NA	1qH3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.469629559	sgMsh2	cell line
chr1	193240306	193240306	C	T	ENSMUST00000016338.14	1	ENSMUSG00000016194	missense	V/M	148	Hsd11b1	ENSMUST00000016338.14:c.442G>A	ENSMUSP00000016338.8:p.Val148Met	H-2-Kb	8	11	1	MVMSTAAL	VVMSTAAL	NetMHC	219.52	49.67	0.226	231	0.061	262.464	93.471	0.356	49.67	219.52	80.1	298.6	147.1431334	313.8629122	106.8415057	226.3288934	M6_p20	1.714285714	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.066	231	0	0	NA	1qH6	chr1-176139660-195166209	4	2	2	0.93	4.367554902	NA	1	0.309955509	sgMsh2	cell line
chr1	181054895	181054895	TA	T	ENSMUST00000036819.6	1	ENSMUSG00000038768	FS	Y/X	74	9130409I23Rik	ENSMUST00000036819.6:c.221del	ENSMUSP00000042889.6:p.Tyr74LeufsTer11	H-2-Kb	8	4	8	KWVIFCAL	KWVIFCAY	NetMHC	228.19	8748.78	38.34	140	0.157	228.423	10340.758	45.27	8748.78	228.19	12501.6	432.8	11932.73511	228.4230889	7323.859428	228.4230889	M6_p20	2.671428571	2.671428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.186	140	0	0	NA	1qH4	chr1-176139660-195166209	4	2	2	0.93	4.367554902	NA	1	0.87351098	sgMsh2	cell line
chr1	173203457	173203457	A	C	ENSMUST00000216603.1	5	ENSMUSG00000046643	missense	T/P	34	Olfr218	ENSMUST00000216603.1:c.100A>C	ENSMUSP00000150815.1:p.Thr34Pro	H-2-Kb	8	8	4	VFLPLYLL	VFLTLYLL	SMM	190.871	113.695	0.596	271	0.041	286.393	189.811	0.663	226.98	326.11	223.4	258.2	113.6946424	190.8710225	156.221211	314.5864409	M6_p20	2.157142857	2.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.058	271	0	0	NA	1qH3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.272385144	sgMsh2	cell line
chr10	57512133	57512133	C	T	ENSMUST00000079833.5	1	ENSMUSG00000019878	missense	L/F	497	Hsf2	ENSMUST00000079833.5:c.1489C>T	ENSMUSP00000078761.4:p.Leu497Phe	H-2-Kb	8	10	2	TFFYLCEL	TLFYLCEL	NetMHCpan	111.4	155.6	1.397	171	0.158	267.258	684.998	2.563	919.06	328.13	155.6	111.4	740.8665723	252.1970487	629.1294278	282.3189304	M6_p20	1.557142857	1.557142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.177	171	0	0	NA	10qB4	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.83124432	sgMsh2	cell line
chr10	21382316	21382316	C	T	ENSMUST00000042699.13	1	ENSMUSG00000037542	missense	T/I	104	Aldh8a1	ENSMUST00000042699.13:c.311C>T	ENSMUSP00000038878.7:p.Thr104Ile	H-2-Kb	8	4	8	KTLTLARI	KTLTLART	SMMPMBEC	381.716	1249.511	3.273	157	0.185	479.453	3929.981	8.197	5879.62	507.32	7377.9	548.4	1980.341096	451.5855118	1249.510759	381.7156799	M6_p20	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.183	157	0	0	NA	10qA3	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.859422094	sgMsh2	cell line
chr1	191356936	191356936	A	G	ENSMUST00000067976.8	1	ENSMUSG00000026626	missense	V/A	275	Ppp2r5a	ENSMUST00000067976.8:c.824T>C	ENSMUSP00000070726.3:p.Val275Ala	H-2-Kb	8	5	7	KQFLMKAL	KQFLMKVL	SMMPMBEC	271.481	610.576	2.249	247	0.182	341.253	792.939	2.324	2306.93	531.29	910.2	395.6	675.6783445	286.906244	610.5763804	271.4813499	M6_p20	0.957142857	0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.185	247	0	0	NA	1qH6	chr1-176139660-195166209	4	2	2	0.93	4.367554902	NA	1	0.868814685	sgMsh2	cell line
chr1	181054895	181054895	TA	T	ENSMUST00000036819.6	1	ENSMUSG00000038768	FS	Y/X	74	9130409I23Rik	ENSMUST00000036819.6:c.221del	ENSMUSP00000042889.6:p.Tyr74LeufsTer11	H-2-Kb	8	10	2	ALYLVVLL	NA	SMMPMBEC	308.845	NA	NA	140	0.157	482.538	NA	NA	NA	629.54	NA	1005.1	NA	335.5366776	NA	308.8445912	M6_p20	3.185714286	3.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.186	140	0	0	NA	1qH4	chr1-176139660-195166209	4	2	2	0.93	4.367554902	NA	1	0.87351098	sgMsh2	cell line
chr1	188948540	188948540	A	T	ENSMUST00000060479.13	1	ENSMUSG00000026609	missense	E/V	4905	Ush2a	ENSMUST00000060479.13:c.14714A>T	ENSMUSP00000050454.7:p.Glu4905Val	H-2-Kb	8	7	5	VAYNVAGS	VAYNEAGS	SMM	145.124	345.732	2.382	117	0.154	446.247	1560.008	3.496	2714.75	644.33	4761.1	1559.4	345.7323355	145.1242539	405.2658414	248.1646968	M6_p20	0.257142857	0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.159	117	0	0	NA	1qH6	chr1-176139660-195166209	4	2	2	0.93	4.367554902	NA	1	0.746710999	sgMsh2	cell line
chr1	179529275	179529275	G	T	ENSMUST00000027769.5	1	ENSMUSG00000026492	missense	P/T	365	Tfb2m	ENSMUST00000027769.5:c.1093C>A	ENSMUSP00000027769.5:p.Pro365Thr	H-2-Kb	8	10	2	YTHDFKKL	YPHDFKKL	NetMHCpan	290.1	6458.7	22.264	25	0.32	445.62	4210.443	9.448	10645.54	954.87	6458.7	290.1	1962.18522	490.6140712	1724.80499	400.6268017	M6_p20	-1.228571429	-1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.264	25	0	0	NA	1qH4	chr1-176139660-195166209	4	2	2	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr10	64088725	64088725	T	C	ENSMUST00000105439.1	1	ENSMUSG00000042846	missense	N/S	221	Lrrtm3	ENSMUST00000105439.1:c.662A>G	ENSMUSP00000101079.1:p.Asn221Ser	H-2-Kb	9	10	2	LSLALFPRL	LNLALFPRL	NetMHC	26.49	54.51	2.058	94	0.16	83.109	104.919	1.262	54.51	26.49	33.9	26.5	169.8673846	159.628341	155.3280893	139.7172407	M6_p20	1.414285714	1.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.172	94	0	0	NA	10qB4	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.807762842	sgMsh2	cell line
chr1	193240306	193240306	C	T	ENSMUST00000016338.14	1	ENSMUSG00000016194	missense	V/M	148	Hsd11b1	ENSMUST00000016338.14:c.442G>A	ENSMUSP00000016338.8:p.Val148Met	H-2-Kb	9	5	7	VNFLSYMVM	VNFLSYVVM	NetMHCpan	14.9	23.7	1.591	231	0.061	35.48	37.563	1.059	63.67	34.56	23.7	14.9	38.29217191	36.40072218	36.83409467	41.04403034	M6_p20	1.785714286	1.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.066	231	0	0	NA	1qH6	chr1-176139660-195166209	4	2	2	0.93	4.367554902	NA	1	0.309955509	sgMsh2	cell line
chr1	175899449	175899449	GA	G	ENSMUST00000039725.11	1	ENSMUSG00000039748	FS	E/X	442	Exo1	ENSMUST00000039725.11:c.1328del	ENSMUSP00000039376.6:p.Asn443MetfsTer35	H-2-Kb	9	14	0	VGMAHHLTL	NA	NetMHCpan	32.3	NA	NA	155	0.168	137.244	NA	NA	NA	58.59	NA	32.3	NA	263.6999212	NA	215.8986864	M6_p20	0.6	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.182	155	0	0	NA	1qH4	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.854725798	sgMsh2	cell line
chr1	173203457	173203457	A	C	ENSMUST00000216603.1	5	ENSMUSG00000046643	missense	T/P	34	Olfr218	ENSMUST00000216603.1:c.100A>C	ENSMUSP00000150815.1:p.Thr34Pro	H-2-Kb	9	7	5	IVFLPLYLL	IVFLTLYLL	NetMHC	67.8	62.99	0.929	271	0.041	112.814	100.286	0.889	62.99	67.8	120.2	137.5	80.37296686	88.12720572	142.3147781	154.9708446	M6_p20	2.157142857	2.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.058	271	0	0	NA	1qH3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.272385144	sgMsh2	cell line
chr10	57512133	57512133	C	T	ENSMUST00000079833.5	1	ENSMUSG00000019878	missense	L/F	497	Hsf2	ENSMUST00000079833.5:c.1489C>T	ENSMUSP00000078761.4:p.Leu497Phe	H-2-Kb	9	9	3	ATFFYLCEL	ATLFYLCEL	NetMHCpan	16	70.9	4.431	171	0.158	83.58	243.834	2.917	237.49	76.95	70.9	16	258.8868552	92.28051297	250.1785091	90.20902731	M6_p20	1.557142857	1.671428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.177	171	0	0	NA	10qB4	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.83124432	sgMsh2	cell line
chr1	174836908	174836908	G	A	ENSMUST00000055294.3	1	ENSMUSG00000050069	missense	P/L	125	Grem2	ENSMUST00000055294.3:c.374C>T	ENSMUSP00000049640.3:p.Pro125Leu	H-2-Kb	9	6	6	CAFCKLQRV	CAFCKPQRV	NetMHC	190.08	651.95	3.43	73	0.137	267.939	693.443	2.588	651.95	190.08	1302.8	373	537.1678354	228.091972	734.93681	307.7868068	M6_p20	0.2	0.857142857	TRUE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.133	73	0	0	NA	1qH3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.624607314	sgMsh2	cell line
chr10	50754122	50754122	G	T	ENSMUST00000035606.9	5	ENSMUSG00000038774	missense	S/I	1769	Ascc3	ENSMUST00000035606.9:c.5306G>T	ENSMUSP00000036726.8:p.Ser1769Ile	H-2-Kb	9	7	5	IMNPIYYSL	IMNPSYYSL	NetMHCpan	106.8	122.5	1.147	193	0.259	213.697	155.456	0.727	120.49	198.25	122.5	106.8	188.4126249	229.1447967	231.3396105	261.9690589	M6_p20	-0.028571429	0.457142857	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.266	193	0	0	NA	10qB3	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr1	181054895	181054895	TA	T	ENSMUST00000036819.6	1	ENSMUSG00000038768	FS	Y/X	74	9130409I23Rik	ENSMUST00000036819.6:c.221del	ENSMUSP00000042889.6:p.Tyr74LeufsTer11	H-2-Kb	9	6	6	VIFCALYLV	VIFCAYVFG	SMM	205.168	492.164	2.399	140	0.157	275.378	1652.982	6.003	4140.3	218.67	2813.8	587	492.1641774	205.1681772	423.8869047	332.0855664	M6_p20	2.514285714	2.614285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.186	140	0	0	NA	1qH4	chr1-176139660-195166209	4	2	2	0.93	4.367554902	NA	1	0.87351098	sgMsh2	cell line
chr1	174250568	174250568	A	G	ENSMUST00000214725.1	5	ENSMUSG00000050788	missense	F/L	120	Olfr419	ENSMUST00000214725.1:c.358T>C	ENSMUSP00000149512.1:p.Phe120Leu	H-2-Kb	9	9	3	MGLDRYVAI	MGFDRYVAI	NetMHCpan	176	25.6	0.145	168	0.143	267.445	86.898	0.325	67.32	239.6	25.6	176	149.3172559	418.8996524	106.4755765	295.2908568	M6_p20	0.714285714	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.152	168	0	0	NA	1qH3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.71383693	sgMsh2	cell line
chr10	62563277	62563277	A	G	ENSMUST00000065887.13	1	ENSMUSG00000036955	missense	Y/H	313	Kif1bp	ENSMUST00000065887.13:c.937T>C	ENSMUSP00000065160.7:p.Tyr313His	H-2-Kb	9	7	5	CWIKHCLTL	CWIKYCLTL	SMM	252.412	202.353	0.802	267	0.172	411.623	333.985	0.811	328.15	396.42	599.6	854.8	202.3531643	252.4120012	339.8208329	426.8251484	M6_p20	0.971428571	0.971428571	TRUE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.17	267	0	0	NA	10qB4	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.798370251	sgMsh2	cell line
chr1	194796987	194796987	A	G	ENSMUST00000027952.11	1	ENSMUSG00000026640	missense	T/A	1319	Plxna2	ENSMUST00000027952.11:c.3955A>G	ENSMUSP00000027952.5:p.Thr1319Ala	H-2-Kb	9	10	2	RAYAMRVLF	RTYAMRVLF	NetMHCpan	300.6	298.8	0.994	117	0.197	395.227	525.832	1.33	610.51	463.88	298.8	300.6	496.7181164	360.6699835	554.9450731	429.783759	M6_p20	1.242857143	1.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.219	117	0	0	NA	1qH6	chr1-176139660-195166209	4	2	2	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr10	23897365	23897365	T	C	ENSMUST00000041416.7	1	ENSMUSG00000037440	missense	Y/H	97	Vnn1	ENSMUST00000041416.7:c.289T>C	ENSMUSP00000040599.7:p.Tyr97His	H-2-Kb	9	7	5	TIYPHLEEI	TIYPYLEEI	NetMHCpan	162.8	59.8	0.367	90	0.178	280.695	187.481	0.668	155.05	490.72	59.8	162.8	228.6177783	285.1740477	219.9125427	276.216743	M6_p20	-0.685714286	-0.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.203	90	0	0	NA	10qA4	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.953348005	sgMsh2	cell line
chr10	57523171	57523171	G	A	ENSMUST00000020027.10	1	ENSMUSG00000019877	missense	A/V	212	Serinc1	ENSMUST00000020027.10:c.635C>T	ENSMUSP00000020027.4:p.Ala212Val	H-2-Kb	9	3	9	LNYLLSLVV	LNYLLSLVA	SMM	342.855	1368.075	3.99	144	0.125	438.089	1841.661	4.204	4884.69	850.08	2279.7	469.5	1368.075294	342.8546153	1403.621462	406.6773641	M6_p20	2.528571429	2.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.142	144	0	0	NA	10qB4	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.666873974	sgMsh2	cell line
chr10	57523171	57523171	G	A	ENSMUST00000020027.10	1	ENSMUSG00000019877	missense	A/V	212	Serinc1	ENSMUST00000020027.10:c.635C>T	ENSMUSP00000020027.4:p.Ala212Val	H-2-Kb	9	11	1	VVVLFFVYY	AVVLFFVYY	SMM	72.629	215.829	2.972	144	0.125	491.804	1280.069	2.603	2285.19	884.01	9116.8	5740.5	215.8291001	72.6289892	274.9476424	99.59785837	M6_p20	2.171428571	3.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.142	144	0	0	NA	10qB4	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.666873974	sgMsh2	cell line
chr10	79997840	79997840	AC	A	ENSMUST00000171637.7	1	ENSMUSG00000035722	FS	H/X	46	Abca7	ENSMUST00000171637.7:c.143del	ENSMUSP00000128121.1:p.Pro48LeufsTer30	H-2-Db	9	5	9	VAVRHSHPL	VAVRHSHPP	NetMHC	149.41	14883.63	99.616	38	0.263	252.796	7089.259	28.043	14883.63	149.41	9705.3	158.4	4473.217343	377.2419664	4391.066356	347.1922322	M6_p20	-0.757142857	-0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.262	38	0	0	NA	10qC1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr10	79997840	79997840	AC	A	ENSMUST00000171637.7	1	ENSMUSG00000035722	FS	H/X	46	Abca7	ENSMUST00000171637.7:c.143del	ENSMUSP00000128121.1:p.Pro48LeufsTer30	H-2-Db	9	14	0	WSITNATFQ	NA	SMMPMBEC	202.568	NA	NA	38	0.263	296.897	NA	NA	NA	220.01	NA	4624.1	NA	373.7833913	NA	202.5676081	M6_p20	0.1	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.262	38	0	0	NA	10qC1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr10	80730907	80730907	A	C	ENSMUST00000020420.8	1	ENSMUSG00000020198	missense	I/M	80	Ap3d1	ENSMUST00000020420.8:c.240T>G	ENSMUSP00000020420.7:p.Ile80Met	H-2-Db	9	5	7	WAAFNIMEV	WAAFNIIEV	NetMHCpan	142.9	122.7	0.859	304	0.128	398.595	303.122	0.76	236.74	407.59	122.7	142.9	369.5047282	389.6009436	406.9771255	433.0818667	M6_p20	1.171428571	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.133	304	0	0	NA	10qC1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.624607314	sgMsh2	cell line
chr10	103404331	103404331	A	G	ENSMUST00000074204.11	1	ENSMUSG00000019894	missense	Q/R	305	Slc6a15	ENSMUST00000074204.11:c.914A>G	ENSMUSP00000073829.4:p.Gln305Arg	H-2-Kb	8	9	3	ATRVFFAL	ATQVFFAL	NetMHC	11.81	16.33	1.383	173	0.116	30.496	37.025	1.214	16.33	11.81	34.9	33.2	39.15074224	29.02284617	44.8476819	31.96980594	M6_p20	1.457142857	1.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.126	173	0	0	NA	10qD1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.591733245	sgMsh2	cell line
chr10	129501829	129501829	T	C	ENSMUST00000218901.1	NA	ENSMUSG00000044025	missense	F/S	315	Olfr790	ENSMUST00000218901.1:c.944T>C	ENSMUSP00000151759.1:p.Phe315Ser	H-2-Kb	8	13	2	ISFSSKNL	IFFSSKNL	NetMHCpan	18.5	115.8	6.259	99	0.121	19.094	83.126	4.354	110.95	18.52	115.8	18.5	45.89231861	19.66708524	55.30189331	20.68902384	M6_p20	-0.457142857	-0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.126	99	0	0	NA	10qD3	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.591733245	sgMsh2	cell line
chr10	129462699	129462699	A	G	ENSMUST00000213329.1	5	ENSMUSG00000096497	missense	T/A	8	Olfr787	ENSMUST00000213329.1:c.22A>G	ENSMUSP00000149391.1:p.Thr8Ala	H-2-Kb	8	6	3	VIAEFVLL	VITEFVLL	NetMHCpan	30.7	45.4	1.479	307	0.244	39.298	45.805	1.166	35.18	37.22	45.4	30.7	46.21042896	41.37518989	60.91720937	60.35871704	M6_p20	2.485714286	2.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.243	307	0	0	NA	10qD3	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr10	129659829	129659829	A	G	ENSMUST00000217094.1	3	ENSMUSG00000108114	missense	T/A	8	Olfr800	ENSMUST00000217094.1:c.22A>G	ENSMUSP00000151047.1:p.Thr8Ala	H-2-Kb	8	7	2	TAFILLGL	TTFILLGL	NetMHCpan	41.4	46	1.111	342	0.129	102.198	77.224	0.756	83.13	85.89	46	41.4	76.69022289	118.5059074	77.75709016	122.9532464	M6_p20	2.871428571	2.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.141	342	0	0	NA	10qD3	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	sgMsh2	cell line
chr10	129160683	129160683	TA	T	ENSMUST00000214271.1	5	ENSMUSG00000061367	FS	F/X	100	Olfr771	ENSMUST00000214271.1:c.300del	ENSMUSP00000151108.1:p.Phe100LeufsTer7	H-2-Kb	8	6	6	VIQVFLLM	VIQVFFTD	NetMHC	93.83	5112.29	54.485	142	0.225	119.114	2777.307	23.316	5112.29	93.83	6812.6	118.9	412.800296	119.3273511	442.3234863	149.1900983	M6_p20	2.5	2.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.232	142	0	0	NA	10qD3	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr10	109693190	109693190	C	A	ENSMUST00000032719.14	5	ENSMUSG00000020181	missense	G/C	2170	Nav3	ENSMUST00000032719.14:c.6508G>T	ENSMUSP00000032719.7:p.Gly2170Cys	H-2-Kb	8	7	5	KGFLCRYL	KGFLGRYL	SMMPMBEC	99.94	261.662	2.618	65	0.138	114.301	319.282	2.793	592.08	111.99	303.8	121.9	334.7649647	116.611129	261.6616044	99.9401507	M6_p20	0.957142857	0.957142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.149	65	0	0	NA	10qD1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.699748043	sgMsh2	cell line
chr10	128225954	128225954	T	C	ENSMUST00000026455.7	1	ENSMUSG00000025389	missense	F/L	25	Mip	ENSMUST00000026455.7:c.73T>C	ENSMUSP00000026455.7:p.Phe25Leu	H-2-Kb	8	7	5	LFYVLFGL	LFYVFFGL	SMMPMBEC	75.29	7.059	0.094	100	0.25	94.735	7.697	0.081	8.12	112.78	60.9	291.1	7.273442335	76.69022289	7.058948282	75.29046857	M6_p20	2.242857143	2.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.257	100	0	0	NA	10qD3	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr10	129160683	129160683	TA	T	ENSMUST00000214271.1	5	ENSMUSG00000061367	FS	F/X	100	Olfr771	ENSMUST00000214271.1:c.300del	ENSMUSP00000151108.1:p.Phe100LeufsTer7	H-2-Kb	8	8	4	QVFLLMFL	NA	SMM	123.521	NA	NA	142	0.225	158.776	NA	NA	NA	139.83	NA	308.1	NA	123.5207728	NA	177.7215122	M6_p20	3.3	3.3	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.232	142	0	0	NA	10qD3	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr10	129659829	129659829	A	G	ENSMUST00000217094.1	3	ENSMUSG00000108114	missense	T/A	8	Olfr800	ENSMUST00000217094.1:c.22A>G	ENSMUSP00000151047.1:p.Thr8Ala	H-2-Kb	8	5	4	TITAFILL	TITTFILL	SMM	122.67	120.154	0.979	342	0.129	167.994	138.046	0.822	154.73	186.11	139.4	188.3	120.1544888	122.6704617	136.691025	149.8787285	M6_p20	2.928571429	2.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.141	342	0	0	NA	10qD3	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	sgMsh2	cell line
chr10	93516261	93516261	C	T	ENSMUST00000129421.7	1	ENSMUSG00000020017	missense	A/V	638	Hal	ENSMUST00000129421.7:c.1913C>T	ENSMUSP00000123336.1:p.Ala638Val	H-2-Kb	8	10	2	TVFSLESL	TAFSLESL	NetMHCpan	70.3	122.4	1.741	191	0.162	221.948	218.218	0.983	206.43	231.21	122.4	70.3	236.4503711	240.2923806	230.0064421	212.686537	M6_p20	1.357142857	1.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.199	191	0	0	NA	10qC2	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.934562823	sgMsh2	cell line
chr10	128225954	128225954	T	C	ENSMUST00000026455.7	1	ENSMUSG00000025389	missense	F/L	25	Mip	ENSMUST00000026455.7:c.73T>C	ENSMUSP00000026455.7:p.Phe25Leu	H-2-Kb	8	4	8	FATLFYVL	FATLFYVF	SMM	186.956	3039.065	16.255	100	0.25	256.251	3026.083	11.809	3020.09	366.72	2498.3	271.1	3039.065077	186.956255	3032.075422	241.4015198	M6_p20	2.057142857	2.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.257	100	0	0	NA	10qD3	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr10	130163110	130163110	A	G	ENSMUST00000216530.1	5	ENSMUSG00000058084	missense	I/T	72	Olfr825	ENSMUST00000216530.1:c.215T>C	ENSMUSP00000149981.1:p.Ile72Thr	H-2-Kb	8	6	6	GNLSFTDL	GNLSFIDL	SMMPMBEC	301.12	345.732	1.148	226	0.164	382.006	453.04	1.186	814.89	549.22	476.8	375.2	429.2793522	388.8123042	345.7323355	301.1202761	M6_p20	0.271428571	0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.163	226	0	0	NA	10qD3	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	sgMsh2	cell line
chr10	103404331	103404331	A	G	ENSMUST00000074204.11	1	ENSMUSG00000019894	missense	Q/R	305	Slc6a15	ENSMUST00000074204.11:c.914A>G	ENSMUSP00000073829.4:p.Gln305Arg	H-2-Kb	8	11	1	RVFFALGL	QVFFALGL	NetMHCpan	56.1	116.2	2.071	173	0.116	278.836	511.295	1.834	593.31	569.36	116.2	56.1	429.2793522	264.0827294	613.3946729	293.5891489	M6_p20	2.685714286	2.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.126	173	0	0	NA	10qD1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.591733245	sgMsh2	cell line
chr10	130472110	130472110	CA	C	ENSMUST00000164227.3	5	ENSMUSG00000091511	FS	L/X	753	Vmn2r87	ENSMUST00000164227.3:c.2258del	ENSMUSP00000129215.2:p.Leu753TrpfsTer25	H-2-Kb	8	15	0	ASLWLSWL	NA	SMM	312.421	NA	NA	372	0.03	407.641	NA	NA	NA	717.62	NA	457.4	NA	312.4208431	NA	357.8821189	M6_p20	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.028	372	0	0	NA	10qD3	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	sgMsh2	cell line
chr10	130472110	130472110	CA	C	ENSMUST00000164227.3	5	ENSMUSG00000091511	FS	L/X	753	Vmn2r87	ENSMUST00000164227.3:c.2258del	ENSMUSP00000129215.2:p.Leu753TrpfsTer25	H-2-Kb	8	19	0	LSWLGTFL	NA	SMMPMBEC	307.426	NA	NA	372	0.03	420.694	NA	NA	NA	1101.66	NA	318.1	NA	523.2870654	NA	307.4255792	M6_p20	1.085714286	1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.028	372	0	0	NA	10qD3	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	sgMsh2	cell line
chr10	78752673	78752673	T	A	ENSMUST00000105383.3	1	ENSMUSG00000078442	missense	K/M	101	Ccdc105	ENSMUST00000105383.3:c.302A>T	ENSMUSP00000101022.2:p.Lys101Met	H-2-Kb	9	11	1	MPPAWYARL	KPPAWYARL	NetMHC	50.07	103.1	2.059	19	0.316	416.089	633.533	1.523	103.1	50.07	200.2	117.5	1066.866308	714.6773197	1154.11743	771.3473645	M6_p20	-0.128571429	0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.353	19	0	0	NA	10qC1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	2	1	sgMsh2	cell line
chr10	79997840	79997840	AC	A	ENSMUST00000171637.7	1	ENSMUSG00000035722	FS	H/X	46	Abca7	ENSMUST00000171637.7:c.143del	ENSMUSP00000128121.1:p.Pro48LeufsTer30	H-2-Kb	9	5	9	VAVRHSHPL	VAVRHSHPP	NetMHC	53.67	10302.53	191.961	38	0.263	106.08	5759.708	54.296	10302.53	53.67	11737.6	80.3	608.2890519	131.8590675	1216.886295	165.2913018	M6_p20	-0.757142857	-0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.262	38	0	0	NA	10qC1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr10	128110868	128110868	TA	T	ENSMUST00000220049.1	5	ENSMUSG00000040054	FS	N/X	84	Baz2a	ENSMUST00000220049.1:c.251del	ENSMUSP00000151961.1:p.Asn84ThrfsTer93	H-2-Kb	9	34	0	THPFFLSSL	NA	NetMHCpan	84.2	NA	NA	220	0.186	202.234	NA	NA	NA	95.36	NA	84.2	NA	309.1078255	NA	342.9651563	M6_p20	1.428571429	1.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.207	220	0	0	NA	10qD3	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.972133188	sgMsh2	cell line
chr10	80730907	80730907	A	C	ENSMUST00000020420.8	1	ENSMUSG00000020198	missense	I/M	80	Ap3d1	ENSMUST00000020420.8:c.240T>G	ENSMUSP00000020420.7:p.Ile80Met	H-2-Kb	9	3	9	ISWAAFNIM	ISWAAFNII	NetMHCpan	77.2	105.8	1.37	304	0.128	160.434	309.664	1.93	240.79	120.37	105.8	77.2	378.5384504	200.4979793	405.7420321	237.82089	M6_p20	1.2	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.133	304	0	0	NA	10qC1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.624607314	sgMsh2	cell line
chr10	115423268	115423268	C	A	ENSMUST00000036044.8	1	ENSMUSG00000034163	missense	P/Q	1606	Zfc3h1	ENSMUST00000036044.8:c.4817C>A	ENSMUSP00000044069.8:p.Pro1606Gln	H-2-Kb	9	8	4	VCLQLYTNM	VCLPLYTNM	NetMHCpan	126.6	116	0.916	257	0.128	170.628	204.029	1.196	192.16	160.85	116	126.6	301.3769268	281.2613131	215.8986864	180.405594	M6_p20	0.071428571	1.257142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.131	257	0	0	NA	10qD2	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.615214723	sgMsh2	cell line
chr10	130163110	130163110	A	G	ENSMUST00000216530.1	5	ENSMUSG00000058084	missense	I/T	72	Olfr825	ENSMUST00000216530.1:c.215T>C	ENSMUSP00000149981.1:p.Ile72Thr	H-2-Kb	9	10	2	FTDLFYSSV	FIDLFYSSV	NetMHC	172.77	202.67	1.173	226	0.164	302.521	266.244	0.88	202.67	172.77	803	499.9	237.1974414	281.2613131	295.2908568	323.779986	M6_p20	0.628571429	0.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.163	226	0	0	NA	10qD3	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	sgMsh2	cell line
chr10	129462699	129462699	A	G	ENSMUST00000213329.1	5	ENSMUSG00000096497	missense	T/A	8	Olfr787	ENSMUST00000213329.1:c.22A>G	ENSMUSP00000149391.1:p.Thr8Ala	H-2-Kb	9	5	4	SVIAEFVLL	SVITEFVLL	NetMHCpan	102.3	87.8	0.858	307	0.244	229.822	200.378	0.872	153.52	182.88	87.8	102.3	247.2350273	276.7642557	269.9292823	321.5511003	M6_p20	2.485714286	2.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.243	307	0	0	NA	10qD3	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr10	128110868	128110868	TA	T	ENSMUST00000220049.1	5	ENSMUSG00000040054	FS	N/X	84	Baz2a	ENSMUST00000220049.1:c.251del	ENSMUSP00000151961.1:p.Asn84ThrfsTer93	H-2-Kb	9	92	0	CMILFLIRI	NA	SMM	116.174	NA	NA	220	0.186	203.714	NA	NA	NA	211.43	NA	1650.6	NA	116.1742828	NA	195.99726	M6_p20	2.771428571	3.4	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.207	220	0	0	NA	10qD3	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.972133188	sgMsh2	cell line
chr10	129160683	129160683	TA	T	ENSMUST00000214271.1	5	ENSMUSG00000061367	FS	F/X	100	Olfr771	ENSMUST00000214271.1:c.300del	ENSMUSP00000151108.1:p.Phe100LeufsTer7	H-2-Kb	9	6	6	VIQVFLLMF	VIQVFFTDV	SMM	194.138	216.327	1.114	142	0.225	285.635	144.013	0.504	38.81	289.27	71.7	2223	216.3266376	194.1377536	237.2739171	282.000579	M6_p20	2.257142857	2.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.232	142	0	0	NA	10qD3	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr10	130472110	130472110	CA	C	ENSMUST00000164227.3	5	ENSMUSG00000091511	FS	L/X	753	Vmn2r87	ENSMUST00000164227.3:c.2258del	ENSMUSP00000129215.2:p.Leu753TrpfsTer25	H-2-Kb	9	9	3	GSWLWGASL	NA	NetMHCpan	270.2	NA	NA	372	0.03	374.862	NA	NA	NA	300.72	NA	270.2	NA	563.7804345	NA	449.0037829	M6_p20	0.914285714	0.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.028	372	0	0	NA	10qD3	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	sgMsh2	cell line
chr10	81420728	81420728	A	G	ENSMUST00000020461.14	1	ENSMUSG00000055053	missense	L/P	34	Nfic	ENSMUST00000020461.14:c.101T>C	ENSMUSP00000020461.8:p.Leu34Pro	H-2-Kb	9	4	8	FAYTWFNPQ	FAYTWFNLQ	SMM	83.581	106.441	1.274	105	0.133	199.198	371.599	1.865	621.79	311.25	2214.7	982.5	106.4412583	83.58146902	121.4087534	87.14651012	M6_p20	-1.242857143	0.142857143	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.14	105	0	0	NA	10qC1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.657481383	sgMsh2	cell line
chr10	129463212	129463212	T	C	ENSMUST00000213329.1	5	ENSMUSG00000096497	missense	Y/H	179	Olfr787	ENSMUST00000213329.1:c.535T>C	ENSMUSP00000149391.1:p.Tyr179His	H-2-Kb	9	7	5	FSCDHFPIL	FSCDYFPIL	SMMPMBEC	181.656	144.627	0.796	366	0.158	286.881	186.193	0.649	172.35	324.24	204.4	459.8	200.0368468	249.5226649	144.6272072	181.6561058	M6_p20	0.757142857	0.757142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.151	366	0	0	NA	10qD3	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.709140635	sgMsh2	cell line
chr10	128225954	128225954	T	C	ENSMUST00000026455.7	1	ENSMUSG00000025389	missense	F/L	25	Mip	ENSMUST00000026455.7:c.73T>C	ENSMUSP00000026455.7:p.Phe25Leu	H-2-Kb	9	10	2	VLFGLGASL	VFFGLGASL	NetMHCpan	191.6	151	0.788	100	0.25	419.773	188.797	0.45	142.36	356.21	151	191.6	238.8416155	621.0263106	226.5948317	483.3369531	M6_p20	1.514285714	2.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.257	100	0	0	NA	10qD3	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr10	128225954	128225954	T	C	ENSMUST00000026455.7	1	ENSMUSG00000025389	missense	F/L	25	Mip	ENSMUST00000026455.7:c.73T>C	ENSMUSP00000026455.7:p.Phe25Leu	H-2-Kb	9	4	8	FATLFYVLF	FATLFYVFF	SMM	115.109	210.916	1.832	100	0.25	258.835	462.582	1.787	677.85	368.99	1957.7	1319.2	210.91623	115.1091906	247.3147393	148.6791262	M6_p20	2.2	2.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.257	100	0	0	NA	10qD3	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr10	130472110	130472110	CA	C	ENSMUST00000164227.3	5	ENSMUSG00000091511	FS	L/X	753	Vmn2r87	ENSMUST00000164227.3:c.2258del	ENSMUSP00000129215.2:p.Leu753TrpfsTer25	H-2-Kb	9	17	0	LWLSWLGTF	NA	SMM	245.533	NA	NA	372	0.03	456.634	NA	NA	NA	499.03	NA	2307.2	NA	245.5330734	NA	414.2380608	M6_p20	1.085714286	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.028	372	0	0	NA	10qD3	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	sgMsh2	cell line
chr11	36008549	36008549	T	C	ENSMUST00000102801.7	5	ENSMUSG00000049336	missense	Y/C	2594	Tenm2	ENSMUST00000102801.7:c.7781A>G	ENSMUSP00000099865.1:p.Tyr2594Cys	H-2-Db	9	5	7	SVLNNACYL	SVLNNAYYL	NetMHCpan	29.4	22.1	0.752	245	0.065	58.079	41.36	0.712	16.41	35.69	22.1	29.4	60.62056782	80.46740575	79.53714539	98.30373071	M6_p20	0.514285714	0.642857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.08	245	0	0	NA	11qA4	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	0.375703647	sgMsh2	cell line
chr11	57201163	57201163	A	T	ENSMUST00000036315.15	1	ENSMUSG00000020524	missense	Y/F	228	Gria1	ENSMUST00000036315.15:c.683A>T	ENSMUSP00000044494.9:p.Tyr228Phe	H-2-Db	9	11	1	FILANLGFM	YILANLGFM	NetMHC	63.12	25.28	0.401	198	0.141	125.151	99.133	0.792	25.28	63.12	83.3	121.9	124.342616	143.4233955	114.9661532	128.4014713	M6_p20	1.457142857	1.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.164	198	0	0	NA	11qB1.3	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	0.770192477	sgMsh2	cell line
chr11	43556667	43556667	G	T	ENSMUST00000050574.6	1	ENSMUSG00000044707	missense	R/L	59	Ccnjl	ENSMUST00000050574.6:c.176G>T	ENSMUSP00000058111.6:p.Arg59Leu	H-2-Db	9	9	3	SALHLAIYL	SARHLAIYL	NetMHC	172.76	6022.1	34.858	84	0.119	214.407	4374.189	20.401	6022.1	172.76	8244.8	501.5	2082.667788	190.8182902	2726.277127	237.9961875	M6_p20	1.885714286	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.124	84	0	0	NA	11qB1.1	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	0.582340654	sgMsh2	cell line
chr11	57201163	57201163	A	T	ENSMUST00000036315.15	1	ENSMUSG00000020524	missense	Y/F	228	Gria1	ENSMUST00000036315.15:c.683A>T	ENSMUSP00000044494.9:p.Tyr228Phe	H-2-Kb	8	9	3	YHFILANL	YHYILANL	NetMHC	27.26	13.26	0.486	198	0.141	48.534	37.11	0.765	13.26	27.26	50	68.8	33.78625068	45.57639811	40.43337559	51.49202839	M6_p20	1.428571429	1.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.164	198	0	0	NA	11qB1.3	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	0.770192477	sgMsh2	cell line
chr11	9331622	9331622	GC	G	ENSMUST00000042740.12	5	ENSMUSG00000004668	FS	A/X	3168	Abca13	ENSMUST00000042740.12:c.9505del	ENSMUSP00000040465.6:p.Gln3169SerfsTer45	H-2-Kb	8	18	0	SLSFFTHL	NA	NetMHCpan	17.2	NA	NA	198	0.061	151.882	NA	NA	NA	29.77	NA	17.2	NA	295.6242117	NA	273.9933359	M6_p20	1.214285714	1.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.061	198	0	0	NA	11qA1	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	0.286474031	sgMsh2	cell line
chr11	66094123	66094123	T	C	ENSMUST00000080665.9	5	ENSMUSG00000056752	missense	R/G	1207	Dnah9	ENSMUST00000080665.9:c.3619A>G	ENSMUSP00000079494.3:p.Arg1207Gly	H-2-Kb	8	10	2	VGQQVAPL	VRQQVAPL	SMM	66.182	315.312	4.764	118	0.11	74.627	1070.287	14.342	1743.62	66.89	2996.9	350.4	315.3116375	66.18201718	396.9538331	82.36448742	M6_p20	0.114285714	0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.111	118	0	0	NA	11qB3	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	0.521288811	sgMsh2	cell line
chr11	57201163	57201163	A	T	ENSMUST00000036315.15	1	ENSMUSG00000020524	missense	Y/F	228	Gria1	ENSMUST00000036315.15:c.683A>T	ENSMUSP00000044494.9:p.Tyr228Phe	H-2-Kb	8	7	5	IGYHFILA	IGYHYILA	NetMHCpan	28.2	28.7	1.018	198	0.141	76.461	89.21	1.167	75.68	69.22	28.7	28.2	131.1414557	106.8415057	102.7401038	83.70280268	M6_p20	1.142857143	1.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.164	198	0	0	NA	11qB1.3	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	0.770192477	sgMsh2	cell line
chr11	35234893	35234893	C	T	ENSMUST00000069837.3	1	ENSMUSG00000056427	missense	P/L	133	Slit3	ENSMUST00000069837.3:c.398C>T	ENSMUSP00000066857.3:p.Pro133Leu	H-2-Kb	8	9	3	STLKLTRL	STPKLTRL	NetMHC	72.92	219.81	3.014	332	0.108	111.877	309.582	2.767	219.81	72.92	396.1	100.8	288.2305431	122.9532464	330.9329418	128.7478543	M6_p20	0.228571429	0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.115	332	0	0	NA	11qA4	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	0.540073993	sgMsh2	cell line
chr11	34688463	34688463	A	T	ENSMUST00000093193.11	1	ENSMUSG00000020143	missense	L/M	708	Dock2	ENSMUST00000093193.11:c.2122T>A	ENSMUSP00000090884.5:p.Leu708Met	H-2-Kb	8	9	3	ATMAYKKL	ATLAYKKL	NetMHCpan	62.7	80.7	1.287	377	0.114	117.441	94.582	0.805	84.03	96.29	80.7	62.7	118.7790917	204.0515979	105.1332282	138.5925865	M6_p20	-0.328571429	-0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.117	377	0	0	NA	11qA4	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	0.549466584	sgMsh2	cell line
chr11	61491124	61491124	G	T	ENSMUST00000079080.12	1	ENSMUSG00000001034	missense	L/I	321	Mapk7	ENSMUST00000079080.12:c.961C>A	ENSMUSP00000078087.6:p.Leu321Ile	H-2-Kb	8	11	1	ISLLGRML	LSLLGRML	SMMPMBEC	146.13	623.362	4.266	86	0.105	171.567	951.229	5.544	1370.14	166.23	1063.5	247.8	838.9575756	176.9049561	623.3615346	146.1302072	M6_p20	1.085714286	1.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.111	86	0	0	NA	11qB2	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	0.521288811	sgMsh2	cell line
chr11	46389319	46389319	A	G	ENSMUST00000109237.8	1	ENSMUSG00000020395	missense	F/S	31	Itk	ENSMUST00000109237.8:c.92T>C	ENSMUSP00000104860.2:p.Phe31Ser	H-2-Kb	8	11	1	SVLTKASL	FVLTKASL	NetMHC	297.35	809.77	2.723	91	0.22	375.03	752.993	2.008	809.77	297.35	773.6	387.2	732.3859428	404.3337559	627.6824703	362.8607551	M6_p20	1.171428571	1.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.232	91	0	0	NA	11qB1.1	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr11	54493324	54493324	A	G	ENSMUST00000046835.13	1	ENSMUSG00000035992	missense	N/S	349	Fnip1	ENSMUST00000046835.13:c.1046A>G	ENSMUSP00000049026.7:p.Asn349Ser	H-2-Kb	8	11	1	SEFFFSHF	NEFFFSHF	SMMPMBEC	217.14	1232.367	5.675	124	0.145	285.252	1836.74	6.439	3606.75	338.27	1908.5	292.7	1764.980859	277.8049629	1232.366829	217.1400833	M6_p20	0.528571429	0.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.157	124	0	0	NA	11qB1.3	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	0.737318408	sgMsh2	cell line
chr11	65855384	65855384	T	C	ENSMUST00000080665.9	5	ENSMUSG00000056752	missense	T/A	3968	Dnah9	ENSMUST00000080665.9:c.11902A>G	ENSMUSP00000079494.3:p.Thr3968Ala	H-2-Kb	8	5	7	VAKWLSAL	VAKWLSTL	NetMHCpan	256.9	254.4	0.99	42	0.19	396.113	672.266	1.697	664.17	383.21	254.4	256.9	680.361923	409.0157201	758.1235717	481.6593553	M6_p20	0.8	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.214	42	0	0	NA	11qB3	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr11	57528173	57528173	A	T	ENSMUST00000020830.13	1	ENSMUSG00000020522	missense	D/V	53	Mfap3	ENSMUST00000020830.13:c.158A>T	ENSMUSP00000020830.7:p.Asp53Val	H-2-Kb	8	4	8	SAGSYSGV	SAGSYSGD	NetMHC	397.02	22519.42	56.721	141	0.05	446.118	12796.838	28.685	22519.42	397.02	29869.5	1113.8	3074.255792	459.9811133	2458.895091	432.2549746	M6_p20	0.328571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.067	141	0	0	NA	11qB1.3	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	0.314651805	sgMsh2	cell line
chr11	61671685	61671685	T	A	ENSMUST00000004959.2	1	ENSMUSG00000004837	missense	C/S	161	Grap	ENSMUST00000004959.2:c.481T>A	ENSMUSP00000004959.2:p.Cys161Ser	H-2-Kb	8	10	2	ASFAQAQF	ACFAQAQF	NetMHCpan	311.8	2356.7	7.558	41	0.22	388.581	3968.216	10.212	6741.31	657.24	2356.7	311.8	4761.458462	401.5503419	3174.972734	375.6124682	M6_p20	0.2	0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.24	41	0	0	NA	11qB2	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr11	69760935	69760935	G	A	ENSMUST00000231829.1	NA	ENSMUSG00000018776	missense	L/F	97	Slc35g3	ENSMUST00000231829.1:c.289C>T	ENSMUSP00000156297.1:p.Leu97Phe	H-2-Kb	8	9	3	ELFIFRCL	ELLIFRCL	SMMPMBEC	273.993	1185.059	4.325	122	0.238	473.352	2367.272	5.001	9945.58	2604.04	3049	543.3	1685.543635	403.403814	1185.059074	273.9933359	M6_p20	2.242857143	2.242857143	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.231	122	0	0	NA	11qB3	chr11-69590981-82929860	4	4	0	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr11	9331622	9331622	GC	G	ENSMUST00000042740.12	5	ENSMUSG00000004668	FS	A/X	3168	Abca13	ENSMUST00000042740.12:c.9505del	ENSMUSP00000040465.6:p.Gln3169SerfsTer45	H-2-Kb	9	17	0	TSLSFFTHL	NA	NetMHC	3.22	NA	NA	198	0.061	15.48	NA	NA	NA	3.22	NA	3.6	NA	27.35961615	NA	33.05597718	M6_p20	1.214285714	1.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.061	198	0	0	NA	11qA1	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	0.286474031	sgMsh2	cell line
chr11	34688463	34688463	A	T	ENSMUST00000093193.11	1	ENSMUSG00000020143	missense	L/M	708	Dock2	ENSMUST00000093193.11:c.2122T>A	ENSMUSP00000090884.5:p.Leu708Met	H-2-Kb	9	11	1	MAYKKLMTV	LAYKKLMTV	NetMHCpan	53.3	93.4	1.752	377	0.114	111.459	136.253	1.222	92.9	63.29	93.4	53.3	179.1059444	159.628341	191.9773533	191.9773533	M6_p20	0.014285714	0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.117	377	0	0	NA	11qA4	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	0.549466584	sgMsh2	cell line
chr11	51586645	51586645	A	G	ENSMUST00000167797.7	1	ENSMUSG00000020359	missense	N/S	88	Phykpl	ENSMUST00000167797.7:c.263A>G	ENSMUSP00000132190.1:p.Asn88Ser	H-2-Kb	9	11	1	SIVDYAQRL	NIVDYAQRL	NetMHC	65.03	1198.66	18.432	133	0.12	224.193	1403.004	6.258	1198.66	65.03	777.7	75.9	1607.348318	372.4860392	1683.642965	420.0006862	M6_p20	-0.428571429	0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.139	133	0	0	NA	11qB1.3	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	0.652785087	sgMsh2	cell line
chr11	51048724	51048724	T	G	ENSMUST00000073543.1	NA	ENSMUSG00000057890	missense	L/V	206	Olfr1375	ENSMUST00000073543.1:c.616T>G	ENSMUSP00000144756.1:p.Leu206Val	H-2-Kb	9	10	2	TVFLFVAPC	TLFLFVAPC	NetMHC	95.5	658.85	6.899	256	0.133	222.429	737.169	3.314	658.85	95.5	783.7	210.3	1175.195176	333.5108752	690.6372522	234.557865	M6_p20	2.328571429	2.7	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.144	256	0	0	NA	11qB1.3	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	0.676266565	sgMsh2	cell line
chr11	34688463	34688463	A	T	ENSMUST00000093193.11	1	ENSMUSG00000020143	missense	L/M	708	Dock2	ENSMUST00000093193.11:c.2122T>A	ENSMUSP00000090884.5:p.Leu708Met	H-2-Kb	9	3	9	IQQHFSATM	IQQHFSATL	NetMHC	108.3	43.99	0.406	377	0.114	432.806	302.966	0.7	43.99	108.3	87	183.1	518.9314595	682.5115418	629.8686601	853.5913393	M6_p20	-0.242857143	-0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.117	377	0	0	NA	11qA4	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	0.549466584	sgMsh2	cell line
chr11	9331622	9331622	GC	G	ENSMUST00000042740.12	5	ENSMUSG00000004668	FS	A/X	3168	Abca13	ENSMUST00000042740.12:c.9505del	ENSMUSP00000040465.6:p.Gln3169SerfsTer45	H-2-Kb	9	20	0	SFFTHLKSL	NA	NetMHCpan	60.5	NA	NA	198	0.061	129.036	NA	NA	NA	108.41	NA	60.5	NA	149.6614677	NA	161.5288124	M6_p20	0.257142857	0.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.061	198	0	0	NA	11qA1	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	0.286474031	sgMsh2	cell line
chr11	67211360	67211360	C	A	ENSMUST00000124516.7	1	ENSMUSG00000056328	missense	R/S	826	Myh1	ENSMUST00000124516.7:c.2476C>A	ENSMUSP00000117569.1:p.Arg826Ser	H-2-Kb	9	6	6	IQYNVSAFM	IQYNVRAFM	NetMHC	125.35	144.71	1.154	353	0.051	385.659	420.869	1.091	144.71	125.35	131.9	140.2	830.0609824	631.1171763	697.02764	656.5230826	M6_p20	0.728571429	0.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.056	353	0	0	NA	11qB3	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	0.262992553	sgMsh2	cell line
chr11	69760935	69760935	G	A	ENSMUST00000231829.1	NA	ENSMUSG00000018776	missense	L/F	97	Slc35g3	ENSMUST00000231829.1:c.289C>T	ENSMUSP00000156297.1:p.Leu97Phe	H-2-Kb	9	11	1	FIFRCLFHL	LIFRCLFHL	NetMHC	137.67	122.76	0.892	122	0.238	231.857	187.574	0.809	122.76	137.67	165.2	290.1	209.947158	215.8291001	215.8986864	247.8848587	M6_p20	1.142857143	2.1	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.231	122	0	0	NA	11qB3	chr11-69590981-82929860	4	4	0	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr11	41971878	41971878	T	A	ENSMUST00000070735.9	1	ENSMUSG00000020436	missense	K/N	126	Gabrg2	ENSMUST00000070735.9:c.378A>T	ENSMUSP00000063812.2:p.Lys126Asn	H-2-Kb	9	4	8	TWYDRRLNF	TWYDRRLKF	SMM	73.979	111.972	1.514	101	0.109	118.503	165.095	1.393	216.1	140.79	744.9	438.1	111.9721455	73.97926292	114.0906357	96.21659863	M6_p20	-1.528571429	-1.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.117	101	0	0	NA	11qA5	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	0.549466584	sgMsh2	cell line
chr11	59589837	59589837	T	G	ENSMUST00000215626.1	5	ENSMUSG00000048919	missense	Q/P	84	Olfr223	ENSMUST00000215626.1:c.251A>C	ENSMUSP00000149991.1:p.Gln84Pro	H-2-Kb	9	8	4	IVPPLLVNL	IVPQLLVNL	NetMHCpan	129.6	141.4	1.091	131	0.076	391.079	352.033	0.9	130.07	151.04	141.4	129.6	588.9928191	631.1171763	562.6651281	673.3641643	M6_p20	1.271428571	2.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.085	131	0	0	NA	11qB1.3	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	0.399185125	sgMsh2	cell line
chr11	61546578	61546578	A	C	ENSMUST00000179936.7	1	ENSMUSG00000001036	missense	I/S	56	Epn2	ENSMUST00000179936.7:c.167T>G	ENSMUSP00000136950.1:p.Ile56Ser	H-2-Kb	9	6	6	VAFSESMSM	VAFSEIMSM	NetMHCpan	123.9	82.3	0.664	119	0.269	145.532	154.465	1.061	140.62	155.51	82.3	123.9	168.310031	135.5532704	254.8296748	263.7849417	M6_p20	0.1	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.274	119	0	0	NA	11qB2	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr11	9331622	9331622	GC	G	ENSMUST00000042740.12	5	ENSMUSG00000004668	FS	A/X	3168	Abca13	ENSMUST00000042740.12:c.9505del	ENSMUSP00000040465.6:p.Gln3169SerfsTer45	H-2-Kb	9	5	8	SSILARASM	SSILARAQH	NetMHC	234.54	16379.8	69.838	198	0.061	481.84	10518.42	21.83	16379.8	234.54	20483.5	414	4657.040341	549.6800816	3883.738676	698.6344547	M6_p20	1.214285714	1.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.061	198	0	0	NA	11qA1	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	0.286474031	sgMsh2	cell line
chr11	54493324	54493324	A	G	ENSMUST00000046835.13	1	ENSMUSG00000035992	missense	N/S	349	Fnip1	ENSMUST00000046835.13:c.1046A>G	ENSMUSP00000049026.7:p.Asn349Ser	H-2-Kb	9	10	2	FSEFFFSHF	FNEFFFSHF	SMMPMBEC	166.437	185.033	1.112	124	0.145	216.734	259.001	1.195	307.57	235.72	668.8	321.4	210.4311361	197.7470439	185.033345	166.4370463	M6_p20	0.528571429	0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.157	124	0	0	NA	11qB1.3	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	0.737318408	sgMsh2	cell line
chr11	60487239	60487239	A	G	ENSMUST00000071880.8	5	ENSMUSG00000042678	missense	E/G	1360	Myo15	ENSMUST00000071880.8:c.4079A>G	ENSMUSP00000071777.2:p.Glu1360Gly	H-2-Kb	9	4	8	SRFGKFVGI	SRFGKFVEI	NetMHC	261.93	462.04	1.764	42	0.071	307.74	408.472	1.327	462.04	261.93	726.3	622.1	354.9032693	309.1078255	339.8208329	306.3726549	M6_p20	1.371428571	1.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.103	42	0	0	NA	11qB2	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	0.483718446	sgMsh2	cell line
chr11	9331622	9331622	GC	G	ENSMUST00000042740.12	5	ENSMUSG00000004668	FS	A/X	3168	Abca13	ENSMUST00000042740.12:c.9505del	ENSMUSP00000040465.6:p.Gln3169SerfsTer45	H-2-Kb	9	47	0	VQLSPLSSL	NA	NetMHC	321.1	NA	NA	198	0.061	448.437	NA	NA	NA	321.1	NA	479.9	NA	416.9749833	NA	741.7370966	M6_p20	1.057142857	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.061	198	0	0	NA	11qA1	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	0.286474031	sgMsh2	cell line
chr11	30149994	30149994	T	A	ENSMUST00000006629.13	5	ENSMUSG00000020315	missense	I/F	195	Sptbn1	ENSMUST00000006629.13:c.583A>T	ENSMUSP00000006629.7:p.Ile195Phe	H-2-Kb	9	9	3	VNFHNFTTS	VNIHNFTTS	SMM	120.812	337.373	2.793	301	0.176	276.273	966.303	3.498	1450.38	372.97	2294.1	416.4	337.3727491	120.8119794	482.2253089	179.5767056	M6_p20	-0.471428571	-0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.171	301	0	0	NA	11qA3.3	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	0.803066546	sgMsh2	cell line
chr11	65855384	65855384	T	C	ENSMUST00000080665.9	5	ENSMUSG00000056752	missense	T/A	3968	Dnah9	ENSMUST00000080665.9:c.11902A>G	ENSMUSP00000079494.3:p.Thr3968Ala	H-2-Kb	9	4	8	LVAKWLSAL	LVAKWLSTL	NetMHCpan	330.3	316.2	0.957	42	0.19	385.746	454.022	1.177	486.24	374.2	316.2	330.3	421.8033261	397.2921646	509.6241499	473.4237051	M6_p20	0.8	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.214	42	0	0	NA	11qB3	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr11	35234893	35234893	C	T	ENSMUST00000069837.3	1	ENSMUSG00000056427	missense	P/L	133	Slit3	ENSMUST00000069837.3:c.398C>T	ENSMUSP00000066857.3:p.Pro133Leu	H-2-Kb	9	8	4	QSTLKLTRL	QSTPKLTRL	SMM	336.597	566.383	1.683	332	0.108	433.519	1078.084	2.487	1426.29	422.15	2368	1961.7	566.3827268	336.5968133	729.8775406	444.8872915	M6_p20	0.228571429	0.228571429	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.115	332	0	0	NA	11qA4	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	0.540073993	sgMsh2	cell line
chr11	57201163	57201163	A	T	ENSMUST00000036315.15	1	ENSMUSG00000020524	missense	Y/F	228	Gria1	ENSMUST00000036315.15:c.683A>T	ENSMUSP00000044494.9:p.Tyr228Phe	H-2-Kb	10	7	5	IGYHFILANL	IGYHYILANL	NetMHC	6.2	6.99	1.127	198	0.141	352.854	457.27	1.296	6.99	6.2	9.1	7.7	1378.256343	975.7307681	905.4406743	698.0073568	M6_p20	1.428571429	1.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.164	198	0	0	NA	11qB1.3	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	0.770192477	sgMsh2	cell line
chr11	80226108	80226108	A	T	ENSMUST00000055056.15	1	ENSMUSG00000017686	missense	I/F	103	Rhot1	ENSMUST00000055056.15:c.307A>T	ENSMUSP00000057669.9:p.Ile103Phe	H-2-Db	9	3	9	YAVNNKHSF	YAVNNKHSI	NetMHC	62.07	8.6	0.139	115	0.104	103.772	22.725	0.219	8.6	62.07	14	92.3	31.44995295	115.2444448	36.43929785	137.2682193	M6_p20	-1.128571429	-1.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.111	115	0	0	NA	11qB5	chr11-69590981-82929860	4	4	0	0.93	4.367554902	NA	1	0.521288811	sgMsh2	cell line
chr11	77777511	77777511	A	G	ENSMUST00000168348.7	1	ENSMUSG00000000631	missense	I/V	66	Myo18a	ENSMUST00000168348.7:c.196A>G	ENSMUSP00000130696.1:p.Ile66Val	H-2-Db	9	5	7	LEISNPVPI	LEISNPIPI	NetMHC	149.56	225.92	1.511	83	0.181	205.022	256.005	1.249	225.92	149.56	560.1	439	262.796756	223.1618741	249.2126022	186.8830873	M6_p20	0.814285714	0.814285714	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.2	83	0	0	NA	11qB5	chr11-69590981-82929860	4	4	0	0.93	4.367554902	NA	1	0.939259119	sgMsh2	cell line
chr11	80226080	80226080	A	G	ENSMUST00000055056.15	1	ENSMUSG00000017686	missense	I/M	93	Rhot1	ENSMUST00000055056.15:c.279A>G	ENSMUSP00000057669.9:p.Ile93Met	H-2-Db	9	3	9	ISQANVICM	ISQANVICI	NetMHC	253.99	234.96	0.925	119	0.101	477.277	443.691	0.93	234.96	253.99	320.4	330	761.412496	745.7959146	566.982951	624.5540084	M6_p20	1.128571429	1.128571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.107	119	0	0	NA	11qB5	chr11-69590981-82929860	4	4	0	0.93	4.367554902	NA	1	0.502503628	sgMsh2	cell line
chr11	73814500	73814500	A	G	ENSMUST00000144724.2	2	ENSMUSG00000061984	missense	V/A	194	Olfr392	ENSMUST00000144724.2:c.581T>C	ENSMUSP00000123649.2:p.Val194Ala	H-2-Db	9	10	2	FANELMIFI	FVNELMIFI	SMM	200.734	1284.163	6.397	226	0.195	314.94	2543.055	8.075	3658.63	406.23	7290.5	928.5	1284.162549	200.7335661	1427.479894	223.6505652	M6_p20	1.5	1.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.199	226	0	0	NA	11qB4	chr11-69590981-82929860	4	4	0	0.93	4.367554902	NA	1	0.934562823	sgMsh2	cell line
chr11	95969851	95969851	T	G	ENSMUST00000013559.2	1	ENSMUSG00000013415	missense	S/R	359	Igf2bp1	ENSMUST00000013559.2:c.1075A>C	ENSMUSP00000013559.2:p.Ser359Arg	H-2-Db	9	8	4	AAMRLQSHL	AAMSLQSHL	SMM	336.217	330.842	0.984	160	0.087	466.447	489.283	1.049	583.59	561.66	681.7	531.5	330.8415143	336.2172565	394.9753567	401.39319	M6_p20	-0.357142857	0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.098	160	0	0	NA	11qD	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.460236968	sgMsh2	cell line
chr11	86491688	86491688	T	C	ENSMUST00000020827.6	1	ENSMUSG00000020521	missense	Y/H	246	Rnft1	ENSMUST00000020827.6:c.736T>C	ENSMUSP00000020827.6:p.Tyr246His	H-2-Kb	8	7	5	KGYWHMLL	KGYWYMLL	NetMHC	10.51	3.53	0.336	181	0.188	32.065	9.208	0.287	3.53	10.51	5.6	14.5	12.81563117	49.62951144	16.13392375	69.78145169	M6_p20	0.528571429	0.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.18	181	0	0	NA	11qC	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.845333207	sgMsh2	cell line
chr11	106330112	106330112	GT	G	ENSMUST00000021056.7	1	ENSMUSG00000001027	FS	N/X	907	Scn4a	ENSMUST00000021056.7:c.2720del	ENSMUSP00000021056.7:p.Asn907ThrfsTer87	H-2-Kb	8	17	0	TSLSMCPL	NA	NetMHC	45.53	NA	NA	148	0.216	76.175	NA	NA	NA	45.53	NA	115.9	NA	77.57825382	NA	74.77217263	M6_p20	1.257142857	1.257142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.203	148	0	0	NA	11qE1	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.953348005	sgMsh2	cell line
chr11	106330112	106330112	GT	G	ENSMUST00000021056.7	1	ENSMUSG00000001027	FS	N/X	907	Scn4a	ENSMUST00000021056.7:c.2720del	ENSMUSP00000021056.7:p.Asn907ThrfsTer87	H-2-Kb	8	47	0	TSRSHYSL	NA	NetMHC	83.9	NA	NA	148	0.216	110.878	NA	NA	NA	83.9	NA	310.7	NA	97.66523514	NA	124.0909187	M6_p20	-1.085714286	-1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.203	148	0	0	NA	11qE1	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.953348005	sgMsh2	cell line
chr11	94463486	94463486	A	G	ENSMUST00000100561.9	1	ENSMUSG00000020866	missense	V/A	201	Cacna1g	ENSMUST00000100561.9:c.602T>C	ENSMUSP00000098127.3:p.Val201Ala	H-2-Kb	8	6	6	SMRILATL	SMRILVTL	NetMHC	125.84	682.84	5.426	73	0.164	204.421	684.749	3.35	682.84	125.84	351.5	171.3	686.6572344	237.5417764	846.7203545	293.5891489	M6_p20	1.514285714	1.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.17	73	0	0	NA	11qD	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.798370251	sgMsh2	cell line
chr11	106376336	106376336	A	G	ENSMUST00000106816.7	1	ENSMUSG00000009210	missense	Y/C	109	Prr29	ENSMUST00000106816.7:c.326A>G	ENSMUSP00000102429.1:p.Tyr109Cys	H-2-Kb	8	5	7	LVYHHHCL	LVYHHHYL	NetMHCpan	79.1	15.7	0.198	54	0.204	148.987	42.351	0.284	35.3	220.6	15.7	79.1	52.8128981	160.9681675	49.40148455	137.0061303	M6_p20	-0.057142857	-0.057142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.199	54	0	0	NA	11qE1	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.934562823	sgMsh2	cell line
chr11	72058021	72058021	G	A	ENSMUST00000075258.12	1	ENSMUSG00000040543	missense	R/W	769	Pitpnm3	ENSMUST00000075258.12:c.2305C>T	ENSMUSP00000074737.6:p.Arg769Trp	H-2-Kb	8	9	3	VVWHWQDL	VVRHWQDL	NetMHCpan	164	1200.7	7.321	137	0.19	222.002	907.754	4.089	1202.31	270.69	1200.7	164	614.8086937	260.4593785	592.570463	183.5439188	M6_p20	-0.571428571	-0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.185	137	0	0	NA	11qB4	chr11-69590981-82929860	4	4	0	0.93	4.367554902	NA	1	0.868814685	sgMsh2	cell line
chr11	80330582	80330582	T	C	ENSMUST00000017836.7	1	ENSMUSG00000017692	missense	V/A	182	Rhbdl3	ENSMUST00000017836.7:c.545T>C	ENSMUSP00000017836.7:p.Val182Ala	H-2-Kb	8	6	6	FLYNGALL	FLYNGVLL	SMMPMBEC	315.312	909.369	2.884	90	0.156	431.283	1158.447	2.686	2001.54	549.03	1145.4	457.3	1171.493815	405.2658414	909.3686959	315.3116375	M6_p20	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.166	90	0	0	NA	11qB5	chr11-69590981-82929860	4	4	0	0.93	4.367554902	NA	1	0.779585069	sgMsh2	cell line
chr11	95969851	95969851	T	G	ENSMUST00000013559.2	1	ENSMUSG00000013415	missense	S/R	359	Igf2bp1	ENSMUST00000013559.2:c.1075A>C	ENSMUSP00000013559.2:p.Ser359Arg	H-2-Kb	9	8	4	AAMRLQSHL	AAMSLQSHL	NetMHC	159.08	222.94	1.401	160	0.087	409.595	316.523	0.773	222.94	159.08	226.5	212.3	406.5462879	606.8900259	544.816184	635.696763	M6_p20	-0.357142857	0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.098	160	0	0	NA	11qD	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.460236968	sgMsh2	cell line
chr11	87035223	87035223	T	C	ENSMUST00000020804.7	1	ENSMUSG00000061666	missense	T/A	299	Gdpd1	ENSMUST00000020804.7:c.895A>G	ENSMUSP00000020804.7:p.Thr299Ala	H-2-Kb	9	9	3	VMADYPTKL	VMTDYPTKL	NetMHCpan	134	233	1.739	61	0.066	178.725	248.628	1.391	288.51	222.06	233	134	258.8868552	177.8729877	238.3691237	179.5767056	M6_p20	-0.771428571	0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.108	61	0	0	NA	11qC	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.507199924	sgMsh2	cell line
chr11	80330582	80330582	T	C	ENSMUST00000017836.7	1	ENSMUSG00000017692	missense	V/A	182	Rhbdl3	ENSMUST00000017836.7:c.545T>C	ENSMUSP00000017836.7:p.Val182Ala	H-2-Kb	9	4	8	ALFLYNGAL	ALFLYNGVL	NetMHCpan	136.3	280.8	2.06	90	0.156	313.442	623.902	1.99	841.75	242.07	280.8	136.3	771.0987516	547.154531	476.7053215	384.8132346	M6_p20	1	1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.166	90	0	0	NA	11qB5	chr11-69590981-82929860	4	4	0	0.93	4.367554902	NA	1	0.779585069	sgMsh2	cell line
chr11	71759877	71759877	A	C	ENSMUST00000108510.1	5	ENSMUSG00000020811	missense	K/T	10	Wscd1	ENSMUST00000108510.1:c.29A>C	ENSMUSP00000104150.1:p.Lys10Thr	H-2-Kb	9	9	2	QTFLRRTQF	QKFLRRTQF	SMMPMBEC	202.885	612.703	3.02	37	0.135	226.778	895.214	3.948	1159.31	242.64	6232.2	486.7	631.1171763	210.91623	612.7029904	202.8850284	M6_p20	-0.542857143	-0.542857143	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.16	37	0	0	NA	11qB4	chr11-69590981-82929860	4	4	0	0.93	4.367554902	NA	1	0.751407295	sgMsh2	cell line
chr11	73354368	73354368	T	G	ENSMUST00000120137.2	2	ENSMUSG00000062128	missense	L/R	205	Olfr20	ENSMUST00000120137.2:c.614T>G	ENSMUSP00000114110.1:p.Leu205Arg	H-2-Kb	9	4	8	VIFVTGGRI	VIFVTGGLI	NetMHC	266.9	418.75	1.569	615	0.128	431.376	548.238	1.271	418.75	266.9	607.7	386.2	488.776143	476.5516746	632.7760017	542.312981	M6_p20	0.785714286	2.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.133	615	0	0	NA	11qB4	chr11-69590981-82929860	4	4	0	0.93	4.367554902	NA	1	0.624607314	sgMsh2	cell line
chr11	105972931	105972931	T	C	ENSMUST00000001963.13	1	ENSMUSG00000020681	missense	Y/H	402	Ace	ENSMUST00000001963.13:c.1204T>C	ENSMUSP00000001963.7:p.Tyr402His	H-2-Kb	9	10	2	QHYLQYKDL	QYYLQYKDL	SMM	224.445	161.849	0.721	193	0.197	298.92	270.261	0.904	320.61	307.27	725.7	731.3	161.8489924	224.4450336	219.9125427	290.5694826	M6_p20	-0.842857143	-0.842857143	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.198	193	0	0	NA	11qE1	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.929866528	sgMsh2	cell line
chr11	80330582	80330582	T	C	ENSMUST00000017836.7	1	ENSMUSG00000017692	missense	V/A	182	Rhbdl3	ENSMUST00000017836.7:c.545T>C	ENSMUSP00000017836.7:p.Val182Ala	H-2-Kb	9	3	9	VALFLYNGA	VALFLYNGV	SMM	359.84	90.18	0.251	90	0.156	384.378	85.49	0.222	42.89	402.95	80.8	710.1	90.17995204	359.8404656	105.9863656	365.8053055	M6_p20	1	1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.166	90	0	0	NA	11qB5	chr11-69590981-82929860	4	4	0	0.93	4.367554902	NA	1	0.779585069	sgMsh2	cell line
chr11	94463486	94463486	A	G	ENSMUST00000100561.9	1	ENSMUSG00000020866	missense	V/A	201	Cacna1g	ENSMUST00000100561.9:c.602T>C	ENSMUSP00000098127.3:p.Val201Ala	H-2-Kb	9	6	6	SMRILATLL	SMRILVTLL	SMM	368.222	342.066	0.929	73	0.164	455.245	372.507	0.818	338.86	407.89	502.9	502.6	342.0660715	368.2222268	402.9489236	520.2954165	M6_p20	1.785714286	1.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.17	73	0	0	NA	11qD	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.798370251	sgMsh2	cell line
chr11	106330112	106330112	GT	G	ENSMUST00000021056.7	1	ENSMUSG00000001027	FS	N/X	907	Scn4a	ENSMUST00000021056.7:c.2720del	ENSMUSP00000021056.7:p.Asn907ThrfsTer87	H-2-Kb	9	47	0	TSRSHYSLC	NA	SMMPMBEC	297.338	NA	NA	148	0.216	415.337	NA	NA	NA	515.82	NA	873.8	NA	314.8545691	NA	297.3377153	M6_p20	-0.614285714	-0.614285714	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.203	148	0	0	NA	11qE1	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.953348005	sgMsh2	cell line
chr11	86491688	86491688	T	C	ENSMUST00000020827.6	1	ENSMUSG00000020521	missense	Y/H	246	Rnft1	ENSMUST00000020827.6:c.736T>C	ENSMUSP00000020827.6:p.Tyr246His	H-2-Kb	9	5	7	KSKGYWHML	KSKGYWYML	NetMHCpan	348.4	234.8	0.674	181	0.188	428.564	337.443	0.787	397.97	561.05	234.8	348.4	369.9218633	492.1641774	304.9650004	364.9639766	M6_p20	-0.571428571	-0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.18	181	0	0	NA	11qC	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.845333207	sgMsh2	cell line
chr12	69190025	69190025	GT	G	ENSMUST00000021356.5	1	ENSMUSG00000020973	FS	T/X	770	Dnaaf2	ENSMUST00000021356.5:c.2308del	ENSMUSP00000021356.5:p.Thr770LeufsTer12	H-2-Db	9	5	7	SSLLNKLWF	SSLLNKTVV	NetMHC	102.74	8.12	0.079	345	0.104	148.467	27.724	0.187	8.12	102.74	17.2	273.1	38.24899249	138.2356312	40.41755147	158.6974688	M6_p20	0.842857143	0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.103	345	0	0	NA	12qC2	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.483718446	sgMsh2	cell line
chr12	64471562	64471562	C	A	ENSMUST00000059833.7	NA	ENSMUSG00000043060	missense	K/N	1043	Fscb	ENSMUST00000059833.7:c.3129G>T	ENSMUSP00000051554.6:p.Lys1043Asn	H-2-Db	9	7	5	VSGTNDDQI	VSGTKDDQI	NetMHC	119.37	17286.61	144.815	199	0.191	145.259	9508.967	65.462	17286.61	119.37	14214.3	388.9	4793.138739	147.4415881	4803.634994	143.0770575	M6_p20	-1.514285714	-1.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.195	199	0	0	NA	12qC1	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.915777641	sgMsh2	cell line
chr12	85139623	85139623	T	A	ENSMUST00000221972.1	1	ENSMUSG00000019235	missense	Y/F	237	Rps6kl1	ENSMUST00000221972.1:c.710A>T	ENSMUSP00000152336.1:p.Tyr237Phe	H-2-Kb	8	7	5	DHFQFSGL	DHFQYSGL	SMM	68.824	84.477	1.227	58	0.19	111.998	168.647	1.506	236.43	141.82	972.8	631.6	84.47729517	68.82401428	100.8648855	82.17505435	M6_p20	0.214285714	0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.206	58	0	0	NA	12qD1	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.967436892	sgMsh2	cell line
chr12	24955384	24955384	T	C	ENSMUST00000110942.10	1	ENSMUSG00000020646	missense	V/A	386	Mboat2	ENSMUST00000110942.10:c.1157T>C	ENSMUSP00000106567.3:p.Val386Ala	H-2-Kb	8	5	7	LTFLTGAL	LTFLTGVL	SMMPMBEC	126.398	284.276	2.249	249	0.048	148.313	332.574	2.242	970.17	184.97	290.4	137.5	374.7485835	159.1255801	284.2758718	126.3979412	M6_p20	1.485714286	1.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.05	249	0	0	NA	12qA1.3	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.23481478	sgMsh2	cell line
chr12	69190025	69190025	GT	G	ENSMUST00000021356.5	1	ENSMUSG00000020973	FS	T/X	770	Dnaaf2	ENSMUST00000021356.5:c.2308del	ENSMUSP00000021356.5:p.Thr770LeufsTer12	H-2-Kb	8	14	0	KTYLTLTL	NA	NetMHCpan	98.5	NA	NA	345	0.104	204.29	NA	NA	NA	217.21	NA	98.5	NA	205.466016	NA	203.114066	M6_p20	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.103	345	0	0	NA	12qC2	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.483718446	sgMsh2	cell line
chr11	117812466	117812466	C	T	ENSMUST00000026649.13	1	ENSMUSG00000048277	missense	A/V	36	Syngr2	ENSMUST00000026649.13:c.107C>T	ENSMUSP00000026649.7:p.Ala36Val	H-2-Kb	8	6	6	VSMVLVLI	VSMVLALI	NetMHCpan	211	48.7	0.231	122	0.139	416.557	107.089	0.257	46.99	355.87	48.7	211	240.2923806	694.6083504	165.4778997	477.2434758	M6_p20	3.085714286	3.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.16	122	0	0	NA	11qE2	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.751407295	sgMsh2	cell line
chr12	79261656	79261656	C	T	ENSMUST00000021547.7	1	ENSMUSG00000066440	missense	D/N	1705	Zfyve26	ENSMUST00000021547.7:c.5113G>A	ENSMUSP00000021547.6:p.Asp1705Asn	H-2-Kb	8	6	6	IGFTLNEV	IGFTLDEV	NetMHCpan	303.9	1187.3	3.907	169	0.053	375.252	970.102	2.585	1333.11	383.96	1187.3	303.9	696.209588	367.908651	752.9046857	382.5956254	M6_p20	0.385714286	0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.053	169	0	0	NA	12qC3	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.248903666	sgMsh2	cell line
chr11	117812466	117812466	C	T	ENSMUST00000026649.13	1	ENSMUSG00000048277	missense	A/V	36	Syngr2	ENSMUST00000026649.13:c.107C>T	ENSMUSP00000026649.7:p.Ala36Val	H-2-Kb	8	11	1	VLIVFSCI	ALIVFSCI	NetMHCpan	183.7	735.4	4.003	122	0.139	340.461	1235.282	3.628	2919.74	536.25	735.4	183.7	1516.142424	402.476011	954.4210297	278.4453695	M6_p20	3.071428571	3.071428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.16	122	0	0	NA	11qE2	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.751407295	sgMsh2	cell line
chr12	54685943	54685943	TG	T	ENSMUST00000161592.7	1	ENSMUSG00000054302	FS	H/X	127	Eapp	ENSMUST00000161592.7:c.381del	ENSMUSP00000123698.1:p.His127GlnfsTer52	H-2-Kb	8	53	0	SLFQTVML	NA	SMMPMBEC	306.719	NA	NA	129	0.109	372.068	NA	NA	NA	617.01	NA	379.6	NA	364.5356443	NA	306.71852	M6_p20	1.757142857	1.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.111	129	0	0	NA	12qC1	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.521288811	sgMsh2	cell line
chr11	117772845	117772845	T	C	ENSMUST00000026659.9	1	ENSMUSG00000025572	missense	I/V	514	Tmc6	ENSMUST00000026659.9:c.1540A>G	ENSMUSP00000026659.3:p.Ile514Val	H-2-Kb	8	10	2	LVLKMAVL	LILKMAVL	SMMPMBEC	395.13	281.67	0.713	91	0.11	457.257	401.56	0.878	565.93	825.08	490.7	423.9	312.4208431	490.6140712	281.6696149	395.1299959	M6_p20	2.257142857	2.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.122	91	0	0	NA	11qE2	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.572948062	sgMsh2	cell line
chr12	31708932	31708932	A	G	ENSMUST00000236002.1	NA	ENSMUSG00000044067	missense	I/T	397	Gpr22	ENSMUST00000236002.1:c.1190T>C	ENSMUSP00000158030.1:p.Ile397Thr	H-2-Kb	8	8	4	GTTTFHPL	GTTIFHPL	SMMPMBEC	181.443	200.789	1.107	431	0.042	344.511	294.142	0.854	1035.85	893.41	338.4	454.2	249.8848923	234.8226582	200.7890385	181.4429089	M6_p20	-0.042857143	-0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.047	431	0	0	NA	12qA3	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.220725893	sgMsh2	cell line
chr11	120444528	120444528	G	A	ENSMUST00000044105.8	1	ENSMUSG00000039691	missense	A/T	155	Tspan10	ENSMUST00000044105.8:c.463G>A	ENSMUSP00000041883.8:p.Ala155Thr	H-2-Kb	8	11	1	TVLFCLAL	AVLFCLAL	NetMHCpan	383.4	488.4	1.274	70	0.229	447.087	566.688	1.268	1269.72	1057.48	488.4	383.4	579.0819124	458.9231861	554.2937734	435.2512229	M6_p20	3.242857143	3.242857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.223	70	0	0	NA	11qE2	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr12	64967733	64967733	T	C	ENSMUST00000066296.8	1	ENSMUSG00000035614	missense	V/A	586	Togaram1	ENSMUST00000066296.8:c.1757T>C	ENSMUSP00000070382.7:p.Val586Ala	H-2-Kb	9	8	4	QGFAEYAIL	QGFVEYAIL	NetMHCpan	84.6	72.4	0.856	278	0.165	170.949	111.203	0.651	66.96	104.7	72.4	84.6	150.006473	237.1974414	224.5173978	307.7868068	M6_p20	1.414285714	1.414285714	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.167	278	0	0	NA	12qC1	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.784281364	sgMsh2	cell line
chr12	16822106	16822106	A	T	ENSMUST00000020908.8	1	ENSMUSG00000057469	missense	T/S	184	E2f6	ENSMUST00000020908.8:c.550A>T	ENSMUSP00000020908.7:p.Thr184Ser	H-2-Kb	9	7	5	LAYVSYQDI	LAYVTYQDI	NetMHC	112.91	79.49	0.704	376	0.101	164.028	168.168	1.025	79.49	112.91	153.9	137.4	182.4357725	206.1151905	206.6569426	190.6557905	M6_p20	-0.242857143	0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.11	376	0	0	NA	12qA1.1	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.516592515	sgMsh2	cell line
chr12	69190025	69190025	GT	G	ENSMUST00000021356.5	1	ENSMUSG00000020973	FS	T/X	770	Dnaaf2	ENSMUST00000021356.5:c.2308del	ENSMUSP00000021356.5:p.Thr770LeufsTer12	H-2-Kb	9	11	1	LWFKTYLTL	NA	SMM	52.736	NA	NA	345	0.104	87.638	NA	NA	NA	123.24	NA	86.1	NA	52.73634174	NA	89.17641311	M6_p20	0.542857143	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.103	345	0	0	NA	12qC2	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.483718446	sgMsh2	cell line
chr11	116047690	116047690	T	C	ENSMUST00000021116.11	1	ENSMUSG00000020770	missense	F/L	40	Unk	ENSMUST00000021116.11:c.118T>C	ENSMUSP00000021116.5:p.Phe40Leu	H-2-Kb	9	3	9	QHYTYLKEL	QHYTYLKEF	NetMHC	157.48	600.28	3.812	114	0.07	176.351	480.118	2.723	600.28	157.48	601.2	194.9	266.1399065	157.8010905	359.9564831	208.0894201	M6_p20	-0.442857143	-0.442857143	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.082	114	0	0	NA	11qE2	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.385096239	sgMsh2	cell line
chr12	3984561	3984561	T	C	ENSMUST00000111178.1	1	ENSMUSG00000020658	missense	N/S	203	Efr3b	ENSMUST00000111178.1:c.608A>G	ENSMUSP00000106809.1:p.Asn203Ser	H-2-Kb	9	4	8	IVPSLLFSL	IVPSLLFNL	NetMHCpan	166.1	98.3	0.592	64	0.297	314.099	222.32	0.708	111.13	239.95	98.3	166.1	333.5108752	388.2486909	525.1096507	590.540925	M6_p20	1.571428571	2.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.308	64	0	0	NA	12qA1.1	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr12	72470286	72470286	T	C	ENSMUST00000162159.7	1	ENSMUSG00000021090	missense	V/A	603	Lrrc9	ENSMUST00000162159.7:c.1808T>C	ENSMUSP00000124394.1:p.Val603Ala	H-2-Kb	9	4	8	FVFDHDLAL	FVFDHDLVL	SMM	222.9	314.13	1.409	244	0.16	235.276	444.635	1.89	575.14	247.58	741.4	377.4	314.1304236	222.8999649	276.216743	222.9718309	M6_p20	0.285714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.165	244	0	0	NA	12qC3	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.774888773	sgMsh2	cell line
chr12	24044796	24044796	A	G	ENSMUST00000101538.4	1	ENSMUSG00000073158	missense	C/R	125	9030624G23Rik	ENSMUST00000101538.4:c.373T>C	ENSMUSP00000099077.3:p.Cys125Arg	H-2-Kb	9	6	6	SWVLRRCRI	SWVLRCCRI	NetMHC	298.07	249.64	0.838	254	0.102	409.78	346.62	0.846	249.64	298.07	1480.4	1958.9	304.8667072	342.8546153	388.3738676	476.7053215	M6_p20	0.214285714	0.214285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.097	254	0	0	NA	12qA1.3	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.455540673	sgMsh2	cell line
chr12	24955384	24955384	T	C	ENSMUST00000110942.10	1	ENSMUSG00000020646	missense	V/A	386	Mboat2	ENSMUST00000110942.10:c.1157T>C	ENSMUSP00000106567.3:p.Val386Ala	H-2-Kb	9	5	7	LTFLTGALM	LTFLTGVLM	NetMHC	354.25	977.61	2.76	249	0.048	486.696	929.583	1.91	977.61	354.25	1440.3	432.5	780.0276543	540.8913049	881.5561915	650.5040428	M6_p20	1.857142857	1.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.05	249	0	0	NA	12qA1.3	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.23481478	sgMsh2	cell line
chr12	51999859	51999859	T	G	ENSMUST00000021339.7	1	ENSMUSG00000020956	missense	N/H	66	Dtd2	ENSMUST00000021339.7:c.196A>C	ENSMUSP00000021339.7:p.Asn66His	H-2-Kb	9	6	6	VNTLLHVKL	VNTLLNVKL	NetMHCpan	212.6	1257.5	5.915	41	0.122	402.088	1117.492	2.779	1647.25	460.42	1257.5	212.6	977.4847712	462.4981501	708.3534281	343.7557727	M6_p20	1.114285714	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.16	41	0	0	NA	12qC1	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.751407295	sgMsh2	cell line
chr12	101058739	101058739	T	C	ENSMUST00000163095.8	5	ENSMUSG00000041846	missense	E/G	167	Ppp4r3a	ENSMUST00000163095.8:c.500A>G	ENSMUSP00000129654.1:p.Glu167Gly	H-2-Db	9	6	6	LALENGGYI	LALENEGYI	NetMHC	10.51	14.84	1.412	139	0.094	31.457	35.527	1.129	14.84	10.51	31.1	20.2	43.01500721	44.01695544	39.95489558	42.71397607	M6_p20	-0.114285714	0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.1	139	0	0	NA	12qE	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.469629559	sgMsh2	cell line
chr12	103950807	103950807	A	G	ENSMUST00000122229.7	1	ENSMUSG00000072849	missense	V/A	201	Serpina1e	ENSMUST00000122229.7:c.602T>C	ENSMUSP00000113606.1:p.Val201Ala	H-2-Db	9	10	2	FALANYILF	FVLANYILF	NetMHC	10.9	298.56	27.391	290	0.041	33.881	270.226	7.976	298.56	10.9	616.6	30.9	241.8911616	37.8111599	235.2718676	36.86124504	M6_p20	1.7	1.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.058	290	0	0	NA	12qE	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.272385144	sgMsh2	cell line
chr12	113490367	113490367	T	C	ENSMUST00000063317.3	NA	ENSMUSG00000051804	missense	V/A	268	Adam6b	ENSMUST00000063317.3:c.803T>C	ENSMUSP00000065529.2:p.Val268Ala	H-2-Db	9	10	2	TAYTNSDPF	TVYTNSDPF	NetMHCpan	15.4	81.5	5.292	410	0.137	23.883	201.28	8.428	445.31	19.02	81.5	15.4	219.0887109	34.2468002	183.4720865	28.74550879	M6_p20	-1.228571429	-1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.135	410	0	0	NA	12qF1	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.633999905	sgMsh2	cell line
chr13	12212733	12212733	T	A	ENSMUST00000099856.5	1	ENSMUSG00000021311	missense	I/F	736	Mtr	ENSMUST00000099856.5:c.2206A>T	ENSMUSP00000097442.4:p.Ile736Phe	H-2-Kb	8	7	5	VGHLFPFM	VGHLIPFM	NetMHCpan	31.3	763.8	24.403	160	0.2	68.083	2828.237	41.541	3698.75	37.37	763.8	31.3	3117.022951	98.79614526	2539.451951	101.5640475	M6_p20	0.871428571	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.212	160	0	0	NA	13qA1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.995614666	sgMsh2	cell line
chr13	11595649	11595649	A	G	ENSMUST00000021750.14	1	ENSMUSG00000021313	missense	V/A	4097	Ryr2	ENSMUST00000021750.14:c.12290T>C	ENSMUSP00000021750.7:p.Val4097Ala	H-2-Kb	8	7	5	IGFNAAVL	IGFNVAVL	SMM	41.375	32.489	0.785	190	0.095	43.132	33.691	0.781	30.94	41.52	51.9	57.1	32.48927349	41.37518989	34.89313575	44.74453509	M6_p20	1.5	1.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.116	190	0	0	NA	13qA1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.544770289	sgMsh2	cell line
chr12	108361203	108361203	T	C	ENSMUST00000021684.5	1	ENSMUSG00000021259	missense	F/L	425	Cyp46a1	ENSMUST00000021684.5:c.1273T>C	ENSMUSP00000021684.4:p.Phe425Leu	H-2-Kb	8	11	1	LTYFPFSL	FTYFPFSL	NetMHCpan	22.8	31.8	1.395	92	0.141	102.142	85.132	0.833	67.05	60.82	31.8	22.8	103.2143305	143.4630303	134.1961326	157.666708	M6_p20	0.714285714	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.135	92	0	0	NA	12qF1	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.633999905	sgMsh2	cell line
chr13	27245800	27245800	A	C	ENSMUST00000035273.3	1	ENSMUSG00000038891	missense	T/P	74	Prl3b1	ENSMUST00000035273.3:c.220A>C	ENSMUSP00000047680.2:p.Thr74Pro	H-2-Kb	8	8	4	TAWPYGLM	TAWTYGLM	NetMHCpan	43.7	33.9	0.776	187	0.214	173.631	86.002	0.495	40.56	82.57	33.9	43.7	174.0764414	292.2402293	131.4437679	264.691503	M6_p20	0.471428571	0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.215	187	0	0	NA	13qA3.1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr12	116841323	116841323	T	A	ENSMUST00000070733.8	1	ENSMUSG00000056553	missense	Y/N	153	Ptprn2	ENSMUST00000070733.8:c.457T>A	ENSMUSP00000064046.7:p.Tyr153Asn	H-2-Kb	8	10	2	RNLPYLEL	RYLPYLEL	NetMHCpan	108.5	442.5	4.078	340	0.203	174.548	1081.609	6.197	1195.52	141.25	442.5	108.5	967.6983488	207.8452003	1215.458122	303.2075422	M6_p20	0.214285714	0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.206	340	0	0	NA	12qF2	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.967436892	sgMsh2	cell line
chr13	11595649	11595649	A	G	ENSMUST00000021750.14	1	ENSMUSG00000021313	missense	V/A	4097	Ryr2	ENSMUST00000021750.14:c.12290T>C	ENSMUSP00000021750.7:p.Val4097Ala	H-2-Kb	8	11	1	AAVLLTNL	VAVLLTNL	NetMHCpan	153.4	37.5	0.244	190	0.095	270.468	68.835	0.255	27.06	175.56	37.5	153.4	100.1705365	377.3462166	106.5957771	365.3759857	M6_p20	1.885714286	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.116	190	0	0	NA	13qA1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.544770289	sgMsh2	cell line
chr13	9575459	9575459	A	G	ENSMUST00000174552.7	1	ENSMUSG00000048264	missense	I/M	618	Dip2c	ENSMUST00000174552.7:c.1854A>G	ENSMUSP00000133806.1:p.Ile618Met	H-2-Kb	8	5	7	SSLRMLMV	SSLRMLIV	NetMHC	227.75	1260.38	5.534	189	0.127	362.114	1029.923	2.844	1260.38	227.75	922.9	467.1	874.4601036	336.3101696	1136.946424	387.9180607	M6_p20	1.471428571	1.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.133	189	0	0	NA	13qA1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.624607314	sgMsh2	cell line
chr13	22293541	22293541	T	C	ENSMUST00000228382.1	NA	ENSMUSG00000069295	missense	S/P	117	Vmn1r196	ENSMUST00000228382.1:c.349T>C	ENSMUSP00000154358.1:p.Ser117Pro	H-2-Kb	8	9	3	RAPWWGRL	RASWWGRL	NetMHCpan	195.9	896.8	4.578	214	0.061	341.715	1061.965	3.108	1423.61	271.58	896.8	195.9	1129.11974	421.444121	994.8096742	411.8508816	M6_p20	-0.385714286	-0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.058	214	0	0	NA	13qA3.1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.272385144	sgMsh2	cell line
chr13	64793242	64793242	T	C	ENSMUST00000091554.5	5	ENSMUSG00000033063	missense	D/G	308	Cntnap3	ENSMUST00000091554.5:c.923A>G	ENSMUSP00000089140.4:p.Asp308Gly	H-2-Kb	8	7	5	TSYLGLNF	TSYLDLNF	NetMHCpan	202.2	703.1	3.477	303	0.112	476.558	690.72	1.449	688.43	465.88	703.1	202.2	693.0107956	727.3442335	528.128981	487.2367077	M6_p20	0.628571429	0.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.113	303	0	0	NA	13qB3	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.530681402	sgMsh2	cell line
chr12	88795504	88795504	G	A	ENSMUST00000163134.7	5	ENSMUSG00000066392	missense	S/N	107	Nrxn3	ENSMUST00000163134.7:c.320G>A	ENSMUSP00000129678.1:p.Ser107Asn	H-2-Kb	8	11	1	NSWHFLMV	SSWHFLMV	NetMHCpan	158.7	22.1	0.139	263	0.11	264.274	32.335	0.122	23.39	637.57	22.1	158.7	46.316955	294.2659418	41.2800296	234.2825811	M6_p20	1.114285714	1.114285714	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.114	263	0	0	NA	12qD3	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.535377698	sgMsh2	cell line
chr13	23543231	23543231	T	C	ENSMUST00000224359.1	NA	ENSMUSG00000114456	missense	Y/C	41	H2bc9	ENSMUST00000224359.1:c.122A>G	ENSMUSP00000153277.1:p.Tyr41Cys	H-2-Kb	8	9	3	SVCVYKVL	SVYVYKVL	SMMPMBEC	165.478	16.624	0.1	280	0.136	338.312	12.062	0.036	6.66	683.22	7.5	468.3	17.69049561	208.324333	16.6241711	165.4778997	M6_p20	1.957142857	1.957142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.141	280	0	0	NA	13qA3.1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.662177679	sgMsh2	cell line
chr13	23574069	23574069	T	C	ENSMUST00000105106.1	NA	ENSMUSG00000069268	missense	Y/C	41	H2bc7	ENSMUST00000105106.1:c.122A>G	ENSMUSP00000100738.1:p.Tyr41Cys	H-2-Kb	8	9	3	SVCVYKVL	SVYVYKVL	SMMPMBEC	165.478	16.624	0.1	237	0.198	338.312	12.062	0.036	6.66	683.22	7.5	468.3	17.69049561	208.324333	16.6241711	165.4778997	M6_p20	1.957142857	1.957142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.18	237	0	0	NA	13qA3.1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.845333207	sgMsh2	cell line
chr13	55247836	55247836	GT	G	ENSMUST00000099490.2	5	ENSMUSG00000021488	FS	G/X	1186	Nsd1	ENSMUST00000099490.2:c.3558del	ENSMUSP00000097089.2:p.Ala1187LeufsTer19	H-2-Kb	8	14	0	ESYFLLTL	NA	NetMHCpan	120.7	NA	NA	28	0.214	313.904	NA	NA	NA	892.84	NA	120.7	NA	318.9627742	NA	308.8445912	M6_p20	1.628571429	1.628571429	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.226	28	0	0	NA	13qB1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr12	88795285	88795285	C	T	ENSMUST00000163134.7	5	ENSMUSG00000066392	missense	P/L	34	Nrxn3	ENSMUST00000163134.7:c.101C>T	ENSMUSP00000129678.1:p.Pro34Leu	H-2-Kb	9	3	9	LGLEFMGLL	LGLEFMGLP	NetMHCpan	62.8	7527.5	119.865	41	0.098	204.373	5023.313	24.579	12735.62	66.57	7527.5	62.8	1832.778578	397.2921646	2519.126636	342.1763584	M6_p20	1.742857143	1.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.137	41	0	0	NA	12qD3	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.643392496	sgMsh2	cell line
chr13	49722263	49722263	G	A	ENSMUST00000165316.7	1	ENSMUSG00000037851	missense	V/I	809	Iars	ENSMUST00000165316.7:c.2425G>A	ENSMUSP00000132082.1:p.Val809Ile	H-2-Kb	9	3	9	IHYLMLPRI	IHYLMLPRV	NetMHCpan	73.9	81.8	1.107	94	0.16	93.551	87.682	0.937	62.46	83.8	81.8	73.9	93.56426278	103.3023021	109.7109561	113.3052413	M6_p20	0.942857143	1.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.148	94	0	0	NA	13qA5	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.695051748	sgMsh2	cell line
chr13	13759442	13759442	T	C	ENSMUST00000110559.2	1	ENSMUSG00000019726	missense	I/T	3575	Lyst	ENSMUST00000110559.2:c.10724T>C	ENSMUSP00000106188.1:p.Ile3575Thr	H-2-Kb	9	10	2	VTTAYTNRL	VITAYTNRL	NetMHC	98.57	85.53	0.868	193	0.181	195.95	171.394	0.875	85.53	98.57	120.4	128.2	222.3873092	263.6999212	253.0754397	277.4917016	M6_p20	-0.728571429	-0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.189	193	0	0	NA	13qA1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.887599867	sgMsh2	cell line
chr12	116059469	116059469	A	T	ENSMUST00000183125.1	1	ENSMUSG00000042063	missense	E/V	269	Zfp386	ENSMUST00000183125.1:c.806A>T	ENSMUSP00000138305.1:p.Glu269Val	H-2-Kb	9	11	1	VTPYMYKEI	ETPYMYKEI	NetMHC	148.16	6532.43	44.09	214	0.15	252.595	4784.034	18.94	6532.43	148.16	6871.4	218.7	2979.270937	286.4903513	3035.638135	345.3424772	M6_p20	-0.742857143	-0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.156	214	0	0	NA	12qF2	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.732622113	sgMsh2	cell line
chr13	65194380	65194380	T	C	ENSMUST00000221659.1	5	ENSMUSG00000032999	missense	M/V	484	Nlrp4f	ENSMUST00000221659.1:c.1450A>G	ENSMUSP00000152151.1:p.Met484Val	H-2-Kb	9	8	4	VLFVFLKKV	VLFMFLKKV	NetMHCpan	130.4	93.3	0.715	65	0.123	205.17	193.134	0.941	136.09	148.37	93.3	130.4	322.1884741	273.5961615	250.1785091	261.9690589	M6_p20	1.428571429	2.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.148	65	0	0	NA	13qB3	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.695051748	sgMsh2	cell line
chr12	118008803	118008803	A	G	ENSMUST00000084806.6	1	ENSMUSG00000018581	missense	F/S	2882	Dnah11	ENSMUST00000084806.6:c.8645T>C	ENSMUSP00000081867.6:p.Phe2882Ser	H-2-Kb	9	10	2	VSLLTDAHV	VFLLTDAHV	NetMHC	151.93	528.66	3.48	470	0.064	432.793	838.709	1.938	528.66	151.93	3378.6	1196.3	713.0336075	385.5760057	964.3840079	480.0096849	M6_p20	0.885714286	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.068	470	0	0	NA	12qF2	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.3193481	sgMsh2	cell line
chr13	11595649	11595649	A	G	ENSMUST00000021750.14	1	ENSMUSG00000021313	missense	V/A	4097	Ryr2	ENSMUST00000021750.14:c.12290T>C	ENSMUSP00000021750.7:p.Val4097Ala	H-2-Kb	9	7	5	IGFNAAVLL	IGFNVAVLL	NetMHCpan	79.4	111.6	1.406	190	0.095	378.446	470.176	1.242	259.19	154.18	111.6	79.4	851.3536455	602.7122243	681.1613539	607.0856956	M6_p20	2.1	2.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.116	190	0	0	NA	13qA1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.544770289	sgMsh2	cell line
chr13	53118802	53118802	G	A	ENSMUST00000021918.8	1	ENSMUSG00000021464	missense	L/F	276	Ror2	ENSMUST00000021918.8:c.826C>T	ENSMUSP00000021918.8:p.Leu276Phe	H-2-Kb	9	8	4	SNPFILMRL	SNPLILMRL	NetMHCpan	123.2	176.6	1.433	62	0.258	355.403	342.444	0.964	133.05	164.91	176.6	123.2	508.2881677	545.8961105	685.8829388	652.0036095	M6_p20	1.528571429	1.528571429	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.256	62	0	0	NA	13qB1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr12	116841323	116841323	T	A	ENSMUST00000070733.8	1	ENSMUSG00000056553	missense	Y/N	153	Ptprn2	ENSMUST00000070733.8:c.457T>A	ENSMUSP00000064046.7:p.Tyr153Asn	H-2-Kb	9	10	2	RNLPYLELL	RYLPYLELL	NetMHC	181.95	954.58	5.246	340	0.203	335.862	809.025	2.409	954.58	181.95	605.4	239.1	760.5188801	432.6233939	857.5313379	491.1905468	M6_p20	1.257142857	1.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.206	340	0	0	NA	12qF2	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.967436892	sgMsh2	cell line
chr13	27245800	27245800	A	C	ENSMUST00000035273.3	1	ENSMUSG00000038891	missense	T/P	74	Prl3b1	ENSMUST00000035273.3:c.220A>C	ENSMUSP00000047680.2:p.Thr74Pro	H-2-Kb	9	8	4	TAWPYGLML	TAWTYGLML	NetMHCpan	89.7	86.7	0.967	187	0.214	280.853	209.973	0.748	153.72	208.32	86.7	89.7	400.9682638	466.7775928	266.2257137	353.3865369	M6_p20	0.757142857	0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.215	187	0	0	NA	13qA3.1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr13	19630076	19630076	C	T	ENSMUST00000002883.6	1	ENSMUSG00000021319	missense	L/F	268	Sfrp4	ENSMUST00000002883.6:c.802C>T	ENSMUSP00000002883.5:p.Leu268Phe	H-2-Kb	9	7	5	RMMLFENCL	RMMLLENCL	SMM	164.479	604.102	3.673	148	0.162	257.546	1549.88	6.018	2651.64	298.14	2354.6	286.4	604.1016195	164.478827	745.1607995	228.6914879	M6_p20	1.114285714	1.114285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.163	148	0	0	NA	13qA2	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.765496182	sgMsh2	cell line
chr13	60896722	60896722	C	T	ENSMUST00000225859.1	NA	ENSMUSG00000114432	missense	C/Y	22	Gm49391	ENSMUST00000225859.1:c.65G>A	ENSMUSP00000153232.1:p.Cys22Tyr	H-2-Kb	9	4	8	AVFLLILYL	AVFLLILCL	SMM	237.197	429.645	1.811	286	0.133	295.089	881.363	2.987	1333.08	330.61	2138.5	779.8	429.6452354	237.1974414	384.8132346	259.5673122	M6_p20	3.028571429	3.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.141	286	0	0	NA	13qB2	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.662177679	sgMsh2	cell line
chr12	103950807	103950807	A	G	ENSMUST00000122229.7	1	ENSMUSG00000072849	missense	V/A	201	Serpina1e	ENSMUST00000122229.7:c.602T>C	ENSMUSP00000113606.1:p.Val201Ala	H-2-Kb	9	10	2	FALANYILF	FVLANYILF	SMM	340.494	382.922	1.125	290	0.041	400.253	477.294	1.192	491.94	400.33	1285	555.1	382.9217191	340.4944207	462.6472659	400.1750427	M6_p20	1.7	1.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.058	290	0	0	NA	12qE	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.272385144	sgMsh2	cell line
chr12	113490367	113490367	T	C	ENSMUST00000063317.3	NA	ENSMUSG00000051804	missense	V/A	268	Adam6b	ENSMUST00000063317.3:c.803T>C	ENSMUSP00000065529.2:p.Val268Ala	H-2-Kb	9	10	2	TAYTNSDPF	TVYTNSDPF	SMM	336.597	378.538	1.125	410	0.137	436.156	441.835	1.013	455.86	502.27	668.7	603.2	378.5384504	336.5968133	427.809082	370.0411313	M6_p20	-1.228571429	-1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.135	410	0	0	NA	12qF1	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.633999905	sgMsh2	cell line
chr13	105444804	105444804	C	A	ENSMUST00000022235.5	NA	ENSMUSG00000021721	missense	P/H	184	Htr1a	ENSMUST00000022235.5:c.551C>A	ENSMUSP00000022235.4:p.Pro184His	H-2-Db	9	8	4	RSNHNECTI	RSNPNECTI	SMMPMBEC	82.522	130.488	1.581	102	0.127	93.833	193.026	2.057	245.57	86.13	327.8	392	140.4817795	101.5359882	130.4878273	82.52204846	M6_p20	-1.057142857	-1.057142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.151	102	0	0	NA	13qD1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.709140635	sgMsh2	cell line
chr14	45614188	45614188	T	C	ENSMUST00000087320.12	1	ENSMUSG00000037697	missense	Y/C	511	Ddhd1	ENSMUST00000087320.12:c.1532A>G	ENSMUSP00000084577.5:p.Tyr511Cys	H-2-Kb	8	8	4	IMYCTSPL	IMYYTSPL	NetMHC	11.28	6.72	0.596	189	0.095	26.327	19.907	0.756	6.72	11.28	8.5	16.2	35.54184757	37.30267702	31.31410475	36.45356443	M6_p20	0.542857143	0.642857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.091	189	0	0	NA	14qC1	chr14-44852972-53079320	3	2	1	0.93	4.367554902	NA	1	0.427362899	sgMsh2	cell line
chr14	30565598	30565598	A	C	ENSMUST00000022529.7	1	ENSMUSG00000021957	missense	D/A	183	Tkt	ENSMUST00000022529.7:c.548A>C	ENSMUSP00000022529.6:p.Asp183Ala	H-2-Kb	8	8	4	AIFAINRL	AIFDINRL	NetMHCpan	63.2	123.2	1.949	64	0.094	133.004	297.159	2.234	429.52	121.55	123.2	63.2	314.5864409	164.7175978	279.7306149	144.4574685	M6_p20	1.342857143	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.127	64	0	0	NA	14qB	chr14-19751082-41183403	3	2	1	0.93	4.367554902	NA	1	0.59642954	sgMsh2	cell line
chr13	84294848	84294848	C	T	ENSMUST00000057495.9	1	ENSMUSG00000035762	missense	L/F	478	Tmem161b	ENSMUST00000057495.9:c.1432C>T	ENSMUSP00000055208.7:p.Leu478Phe	H-2-Kb	8	11	2	GFFYHQYL	GLFYHQYL	NetMHCpan	110.4	348	3.152	71	0.183	251.634	651.008	2.587	1503.26	289.27	348	110.4	747.7217263	254.5305993	554.2937734	248.7367755	M6_p20	0.014285714	0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.191	71	0	0	NA	13qC3	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.896992458	sgMsh2	cell line
chr14	50393400	50393400	AT	A	ENSMUST00000215227.1	5	ENSMUSG00000047716	FS	F/X	215	Olfr736	ENSMUST00000215227.1:c.649del	ENSMUSP00000150611.1:p.Tyr217IlefsTer8	H-2-Kb	8	7	7	IFGTFFIL	IFGTFFYI	SMM	134.816	223.738	1.66	132	0.28	228.095	379.619	1.664	894.35	393.47	535.5	311.4	223.738128	134.8155538	183.9670312	144.7904774	M6_p20	2.228571429	2.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.278	132	0	0	NA	14qC1	chr14-44852972-53079320	3	2	1	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr14	21660934	21660934	A	G	ENSMUST00000182405.8	1	ENSMUSG00000021767	missense	T/A	650	Kat6b	ENSMUST00000182405.8:c.1948A>G	ENSMUSP00000138377.1:p.Thr650Ala	H-2-Kb	8	10	2	TALQHLHM	TTLQHLHM	NetMHC	413.65	463.09	1.12	58	0.224	490.709	386.044	0.787	463.09	413.65	393	428.4	357.8821189	553.0189331	379.0879676	599.4321055	M6_p20	0.2	0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.243	58	0	0	NA	14qA3	chr14-19751082-41183403	3	2	1	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr13	112895502	112895502	T	C	ENSMUST00000022281.4	1	ENSMUSG00000016018	missense	H/R	592	Mtrex	ENSMUST00000022281.4:c.1775A>G	ENSMUSP00000022281.3:p.His592Arg	H-2-Kb	8	5	7	SFYQFQRY	SFYQFQHY	SMMPMBEC	116.075	146.805	1.265	142	0.141	281.85	316.134	1.122	460.58	431.04	1059	1188.1	171.6880231	132.6600022	146.8047136	116.0753495	M6_p20	-1.214285714	-1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.154	142	0	0	NA	13qD2.2	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.723229521	sgMsh2	cell line
chr14	14771285	14771285	A	G	ENSMUST00000057015.7	1	ENSMUSG00000021733	missense	S/G	672	Slc4a7	ENSMUST00000057015.7:c.2014A>G	ENSMUSP00000058313.6:p.Ser672Gly	H-2-Kb	8	10	2	YGVSWGNL	YSVSWGNL	NetMHCpan	215.4	96.8	0.449	246	0.244	353.079	100.846	0.286	88.72	481.4	96.8	215.4	134.8155538	401.5503419	104.8914285	304.6070846	M6_p20	0.285714286	0.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.247	246	0	0	NA	14qA1	chr14-7548571-19566630	4	2	2	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr14	50767276	50767276	A	C	ENSMUST00000006451.7	1	ENSMUSG00000006288	missense	L/W	357	Ttc5	ENSMUST00000006451.7:c.1070T>G	ENSMUSP00000006451.6:p.Leu357Trp	H-2-Kb	8	5	7	VPFTFGWV	VPFTFGLV	SMM	58.444	34.893	0.597	73	0.26	289.376	48.781	0.169	58.86	512.57	161.8	603.5	34.89313575	58.44400914	38.70258739	66.18201718	M6_p20	0.885714286	0.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.244	73	0	0	NA	14qC1	chr14-44852972-53079320	3	2	1	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr14	50360968	50360968	CT	C	ENSMUST00000185091.1	2	ENSMUSG00000051969	FS	L/X	137	Tlr11	ENSMUST00000185091.1:c.417del	ENSMUSP00000138814.1:p.Phe139LeufsTer9	H-2-Kb	8	8	6	LQYLFLII	LQYLFFDH	NetMHCpan	189.6	2553.5	13.468	233	0.27	389.759	3288.15	8.436	4022.8	567.16	2553.5	189.6	4273.069928	396.0408646	1376.385219	383.4775994	M6_p20	2.085714286	2.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.255	233	0	0	NA	14qC1	chr14-44852972-53079320	3	2	1	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr14	23436016	23436016	TA	T	ENSMUST00000188285.6	1	ENSMUSG00000063142	FS	Y/X	680	Kcnma1	ENSMUST00000188285.6:c.2038del	ENSMUSP00000140275.1:p.Tyr680ThrfsTer31	H-2-Kb	8	8	4	AFFTARPV	NA	SMM	285.588	NA	NA	61	0.213	464.476	NA	NA	NA	585.6	NA	996.8	NA	285.5880296	NA	343.3523309	M6_p20	0.685714286	0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.206	61	0	0	NA	14qA3	chr14-19751082-41183403	3	2	1	0.93	4.367554902	NA	1	0.967436892	sgMsh2	cell line
chr14	50393400	50393400	AT	A	ENSMUST00000215227.1	5	ENSMUSG00000047716	FS	F/X	215	Olfr736	ENSMUST00000215227.1:c.649del	ENSMUSP00000150611.1:p.Tyr217IlefsTer8	H-2-Kb	8	8	6	FGTFFILL	FGTFFYII	NetMHCpan	233.4	976.5	4.184	132	0.28	287.949	2952.352	10.253	4758.3	648.51	976.5	233.4	2557.054591	259.8603386	3347.649647	316.0385059	M6_p20	2.371428571	2.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.278	132	0	0	NA	14qC1	chr14-44852972-53079320	3	2	1	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr13	93663296	93663296	C	A	ENSMUST00000015941.7	1	ENSMUSG00000042118	missense	G/W	211	Bhmt2	ENSMUST00000015941.7:c.631G>T	ENSMUSP00000015941.7:p.Gly211Trp	H-2-Kb	8	9	3	RFWPWTSL	RFGPWTSL	SMMPMBEC	321.174	2337.437	7.278	43	0.256	381.821	2469.673	6.468	4511.67	801.43	2457.7	413.1	2481.646968	350.5419514	2337.437461	321.1737185	M6_p20	0.242857143	0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.259	43	0	0	NA	13qC3	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr13	84294848	84294848	C	T	ENSMUST00000057495.9	1	ENSMUSG00000035762	missense	L/F	478	Tmem161b	ENSMUST00000057495.9:c.1432C>T	ENSMUSP00000055208.7:p.Leu478Phe	H-2-Kb	9	10	3	FGFFYHQYL	FGLFYHQYL	NetMHCpan	8.2	34.1	4.159	71	0.183	63.013	177.21	2.812	52.25	17.07	34.1	8.2	357.3633412	127.382568	302.1690645	108.9557112	M6_p20	0.014285714	0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.191	71	0	0	NA	13qC3	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.896992458	sgMsh2	cell line
chr13	104493669	104493669	A	G	ENSMUST00000224208.1	NA	ENSMUSG00000046169	missense	R/G	1107	Adamts6	ENSMUST00000224208.1:c.3319A>G	ENSMUSP00000153359.1:p.Arg1107Gly	H-2-Kb	9	5	7	CSRAYFGQM	CSRAYFRQM	NetMHC	56.05	51.56	0.92	200	0.165	123.245	150.428	1.221	51.56	56.05	80	71	220.8564057	176.6485187	264.3930288	175.4890407	M6_p20	-0.457142857	0.014285714	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.168	200	0	0	NA	13qD1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.78897766	sgMsh2	cell line
chr13	67542395	67542395	TA	T	ENSMUST00000181892.8	1	ENSMUSG00000095432	FS	Y/X	249	Zfp748	ENSMUST00000181892.8:c.745del	ENSMUSP00000137928.1:p.Tyr249ThrfsTer47	H-2-Kb	9	44	0	VAMPFVHSI	NA	NetMHCpan	32.9	NA	NA	111	0.072	254.832	NA	NA	NA	98.41	NA	32.9	NA	411.2538721	NA	441.8247089	M6_p20	1.114285714	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.106	111	0	0	NA	13qB3	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.497807333	sgMsh2	cell line
chr14	20409093	20409093	G	A	ENSMUST00000056073.13	1	ENSMUSG00000039543	missense	T/I	734	Cfap70	ENSMUST00000056073.13:c.2201C>T	ENSMUSP00000056869.6:p.Thr734Ile	H-2-Kb	9	11	1	INVIAWTLL	TNVIAWTLL	NetMHCpan	95	296.1	3.117	102	0.245	184.149	351.857	1.911	278.03	122.12	296.1	95	435.622196	254.1616376	407.6148523	246.1784313	M6_p20	2.357142857	2.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.235	102	0	0	NA	14qA3	chr14-19751082-41183403	3	2	1	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr13	112895502	112895502	T	C	ENSMUST00000022281.4	1	ENSMUSG00000016018	missense	H/R	592	Mtrex	ENSMUST00000022281.4:c.1775A>G	ENSMUSP00000022281.3:p.His592Arg	H-2-Kb	9	7	5	YQFQRYRAI	YQFQHYRAI	NetMHCpan	110.6	73.7	0.666	142	0.141	222.659	230.365	1.035	120.91	136.11	73.7	110.6	356.5414284	344.4371603	339.8208329	309.2074862	M6_p20	-0.671428571	-0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.154	142	0	0	NA	13qD2.2	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.723229521	sgMsh2	cell line
chr13	66956472	66956472	A	G	ENSMUST00000021990.3	1	ENSMUSG00000021518	missense	N/S	136	Ptdss1	ENSMUST00000021990.3:c.407A>G	ENSMUSP00000021990.3:p.Asn136Ser	H-2-Kb	9	4	8	LMYWLDPSL	LMYWLDPNL	SMM	98.426	84.549	0.859	324	0.105	121.089	87.587	0.723	75.17	140.26	113.3	198.7	84.54929682	98.4260372	90.62541326	101.9177905	M6_p20	-0.071428571	0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.108	324	0	0	NA	13qB3	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.507199924	sgMsh2	cell line
chr14	50393400	50393400	AT	A	ENSMUST00000215227.1	5	ENSMUSG00000047716	FS	F/X	215	Olfr736	ENSMUST00000215227.1:c.649del	ENSMUSP00000150611.1:p.Tyr217IlefsTer8	H-2-Kb	9	7	7	IFGTFFILL	IFGTFFYII	SMM	87.722	342.855	3.908	132	0.28	128.608	558.548	4.343	742.77	165.33	925.1	237.1	342.8546153	87.72229799	374.3260056	91.88613834	M6_p20	2.371428571	2.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.278	132	0	0	NA	14qC1	chr14-44852972-53079320	3	2	1	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr14	30565598	30565598	A	C	ENSMUST00000022529.7	1	ENSMUSG00000021957	missense	D/A	183	Tkt	ENSMUST00000022529.7:c.548A>C	ENSMUSP00000022529.6:p.Asp183Ala	H-2-Kb	9	7	5	VAIFAINRL	VAIFDINRL	NetMHCpan	105.3	537.5	5.104	64	0.094	203.936	485.56	2.381	877.91	173.39	537.5	105.3	433.6206938	234.4822647	361.6179668	276.8534884	M6_p20	1.342857143	2.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.127	64	0	0	NA	14qB	chr14-19751082-41183403	3	2	1	0.93	4.367554902	NA	1	0.59642954	sgMsh2	cell line
chr13	84294848	84294848	C	T	ENSMUST00000057495.9	1	ENSMUSG00000035762	missense	L/F	478	Tmem161b	ENSMUST00000057495.9:c.1432C>T	ENSMUSP00000055208.7:p.Leu478Phe	H-2-Kb	9	12	1	FFYHQYLTV	LFYHQYLTV	SMM	182.856	177.873	0.973	71	0.183	249.969	228.71	0.915	259.61	272.82	311.4	457.9	177.8729877	182.8563304	197.8108003	227.1171867	M6_p20	-0.285714286	0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.191	71	0	0	NA	13qC3	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.896992458	sgMsh2	cell line
chr14	50360968	50360968	CT	C	ENSMUST00000185091.1	2	ENSMUSG00000051969	FS	L/X	137	Tlr11	ENSMUST00000185091.1:c.417del	ENSMUSP00000138814.1:p.Phe139LeufsTer9	H-2-Kb	9	8	6	LQYLFLIIM	LQYLFFDHH	SMM	108.921	557.327	5.117	233	0.27	221.413	1537.683	6.945	2518.04	289.63	4225.9	983.6	557.3268932	108.9205937	533.6419961	153.196908	M6_p20	2.857142857	2.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.255	233	0	0	NA	14qC1	chr14-44852972-53079320	3	2	1	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr14	34594872	34594872	T	C	ENSMUST00000022331.2	1	ENSMUSG00000021799	missense	Y/C	320	Opn4	ENSMUST00000022331.2:c.959A>G	ENSMUSP00000022331.2:p.Tyr320Cys	H-2-Kb	9	6	6	VAFAGCSHI	VAFAGYSHI	NetMHCpan	125.5	15.8	0.126	120	0.133	316.575	52.299	0.165	26.39	294.11	15.8	125.5	87.5205423	410.3080144	78.20778752	339.0392667	M6_p20	1.028571429	1.7	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.154	120	0	0	NA	14qB	chr14-19751082-41183403	3	2	1	0.93	4.367554902	NA	1	0.723229521	sgMsh2	cell line
chr14	29170631	29170631	A	T	ENSMUST00000022567.8	1	ENSMUSG00000021991	missense	F/Y	418	Cacna2d3	ENSMUST00000022567.8:c.1253T>A	ENSMUSP00000022567.7:p.Phe418Tyr	H-2-Kb	9	6	6	ANKGFYTQI	ANKGFFTQI	NetMHCpan	153.5	133	0.866	135	0.104	222.545	313.745	1.41	417.88	298.99	133	153.5	384.6892055	273.5961615	242.8007366	171.4944225	M6_p20	-0.357142857	-0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.125	135	0	0	NA	14qA3	chr14-19751082-41183403	3	2	1	0.93	4.367554902	NA	1	0.587036949	sgMsh2	cell line
chr14	50453867	50453867	G	T	ENSMUST00000214792.1	5	ENSMUSG00000095917	missense	A/S	272	Olfr740	ENSMUST00000214792.1:c.814G>T	ENSMUSP00000148916.1:p.Ala272Ser	H-2-Kb	9	11	1	SGMQKLVTL	AGMQKLVTL	NetMHCpan	247.6	429.1	1.733	205	0.146	423.556	718.749	1.697	707.62	313.47	429.1	247.6	968.523137	625.3310593	729.8775406	533.6419961	M6_p20	0.8	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.143	205	0	0	NA	14qC1	chr14-44852972-53079320	3	2	1	0.93	4.367554902	NA	1	0.67157027	sgMsh2	cell line
chr14	50393400	50393400	AT	A	ENSMUST00000215227.1	5	ENSMUSG00000047716	FS	F/X	215	Olfr736	ENSMUST00000215227.1:c.649del	ENSMUSP00000150611.1:p.Tyr217IlefsTer8	H-2-Kb	9	6	8	LIFGTFFIL	LIFGTFFYI	SMM	143.255	248.949	1.738	132	0.28	231.417	341.288	1.475	398.81	333.22	355.8	255.7	248.9487787	143.2550696	326.7758854	207.1333361	M6_p20	2.228571429	2.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.278	132	0	0	NA	14qC1	chr14-44852972-53079320	3	2	1	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr13	78163545	78163545	A	G	ENSMUST00000163257.8	5	ENSMUSG00000064138	missense	S/G	382	Fam172a	ENSMUST00000163257.8:c.1144A>G	ENSMUSP00000133140.1:p.Ser382Gly	H-2-Kb	9	7	5	TSWKGFPSI	TSWKSFPSI	NetMHCpan	129	77.4	0.6	15	0.4	443.474	263.364	0.594	180.59	424.3	77.4	129	449.8937915	703.2504197	346.1385739	462.6472659	M6_p20	-0.042857143	-0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.454	15	0	0	NA	13qC1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	2	1	sgMsh2	cell line
chr13	112895502	112895502	T	C	ENSMUST00000022281.4	1	ENSMUSG00000016018	missense	H/R	592	Mtrex	ENSMUST00000022281.4:c.1775A>G	ENSMUSP00000022281.3:p.His592Arg	H-2-Kb	9	4	8	KSFYQFQRY	KSFYQFQHY	SMM	199.118	214.837	1.079	142	0.141	358.496	409.089	1.141	506.11	438.86	1456.1	1472	214.8374555	199.1177609	312.0685478	278.131386	M6_p20	-1.214285714	-1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.154	142	0	0	NA	13qD2.2	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.723229521	sgMsh2	cell line
chr14	45614188	45614188	T	C	ENSMUST00000087320.12	1	ENSMUSG00000037697	missense	Y/C	511	Ddhd1	ENSMUST00000087320.12:c.1532A>G	ENSMUSP00000084577.5:p.Tyr511Cys	H-2-Kb	9	8	4	IMYCTSPLY	IMYYTSPLY	SMM	100.487	72.629	0.723	189	0.095	436.085	328.486	0.753	479.86	649.71	1452	1280.4	72.6289892	100.4870276	177.1128208	222.4590099	M6_p20	0.085714286	0.642857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.091	189	0	0	NA	14qC1	chr14-44852972-53079320	3	2	1	0.93	4.367554902	NA	1	0.427362899	sgMsh2	cell line
chr15	76072463	76072463	A	G	ENSMUST00000100527.12	1	ENSMUSG00000002524	missense	F/L	157	Puf60	ENSMUST00000100527.12:c.469T>C	ENSMUSP00000098096.4:p.Phe157Leu	H-2-Kb	8	4	8	IRQAFAPL	IRQAFAPF	NetMHC	23.31	759.6	32.587	94	0.181	30.786	616.779	20.035	759.6	23.31	901.1	147.5	473.9581548	29.15680954	407.1364636	32.41455024	M6_p20	0.085714286	0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.169	94	0	0	NA	15qD3	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.793673955	sgMsh2	cell line
chr14	65975611	65975611	T	G	ENSMUST00000022616.13	1	ENSMUSG00000022037	missense	F/V	149	Clu	ENSMUST00000022616.13:c.445T>G	ENSMUSP00000022616.6:p.Phe149Val	H-2-Kb	8	8	4	SSPVYFWM	SSPFYFWM	NetMHCpan	60.6	40.4	0.667	86	0.233	147.752	201.93	1.367	223.25	116.55	40.4	60.6	180.6092545	178.9534189	234.2825811	206.8902384	M6_p20	0.614285714	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.255	86	0	0	NA	14qD1	chr14-53105048-123291781	3	2	1	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr14	103177262	103177262	GA	G	ENSMUST00000159855.7	1	ENSMUSG00000033004	FS	F/X	2571	Mycbp2	ENSMUST00000159855.7:c.7713del	ENSMUSP00000124710.1:p.Gln2573ArgfsTer14	H-2-Kb	8	8	6	KAFFPRNL	KAFFPQEP	NetMHCpan	57.6	16323.4	283.392	169	0.349	126.941	20665.292	162.795	19059.57	128.93	16323.4	57.6	22271.01447	124.9510759	33553.66776	167.3940435	M6_p20	0.228571429	0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.359	169	0	0	NA	14qE2.3	chr14-53105048-123291781	3	2	1	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr14	123515710	123515710	C	A	ENSMUST00000000201.6	5	ENSMUSG00000000197	missense	R/I	288	Nalcn	ENSMUST00000000201.6:c.863G>T	ENSMUSP00000000201.5:p.Arg288Ile	H-2-Kb	8	6	6	VFLMYIAI	VFLMYRAI	SMM	80.675	70.265	0.871	182	0.093	117.27	70.672	0.603	62.95	152.93	94.9	239.3	70.26515361	80.67519058	71.07878574	81.60936526	M6_p20	2.571428571	2.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.11	182	0	0	NA	14qE5	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	sgMsh2	cell line
chr14	64861558	64861558	CT	C	ENSMUST00000176128.7	5	ENSMUSG00000021972	FS	R/X	219	Hmbox1	ENSMUST00000176128.7:c.655del	ENSMUSP00000135448.1:p.Arg219GlyfsTer18	H-2-Kb	8	17	0	INLRRQTL	NA	NetMHCpan	173.9	NA	NA	216	0.231	256.2	NA	NA	NA	179.94	NA	173.9	NA	332.4604589	NA	378.2160895	M6_p20	-1.3	-1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.224	216	0	0	NA	14qD1	chr14-53105048-123291781	3	2	1	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr14	66004100	66004100	T	A	ENSMUST00000059970.8	1	ENSMUSG00000034450	missense	H/L	103	Gulo	ENSMUST00000059970.8:c.308A>T	ENSMUSP00000060912.7:p.His103Leu	H-2-Kb	8	11	1	LGLALSNL	HGLALSNL	NetMHC	204.75	1235.08	6.032	96	0.083	230.187	887.134	3.854	1235.08	204.75	1375.1	217.3	539.1877292	243.0748352	512.5544401	245.8895091	M6_p20	1.214285714	1.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.109	96	0	0	NA	14qD1	chr14-53105048-123291781	3	2	1	0.93	4.367554902	NA	1	0.51189622	sgMsh2	cell line
chr14	108912776	108912776	T	C	ENSMUST00000100322.3	NA	ENSMUSG00000075478	missense	T/A	168	Slitrk1	ENSMUST00000100322.3:c.502A>G	ENSMUSP00000097897.2:p.Thr168Ala	H-2-Kb	8	9	3	ISALPANV	ISTLPANV	SMM	194.868	217.641	1.117	61	0.115	278.341	278.464	1	284.82	287.07	1132.8	711.5	217.6406428	194.8677632	272.1071791	269.6124854	M6_p20	0.814285714	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.127	61	0	0	NA	14qE3	chr14-53105048-123291781	3	2	1	0.93	4.367554902	NA	1	0.59642954	sgMsh2	cell line
chr15	35878713	35878713	A	G	ENSMUST00000048646.8	5	ENSMUSG00000037646	missense	T/A	2953	Vps13b	ENSMUST00000048646.8:c.8857A>G	ENSMUSP00000045490.7:p.Thr2953Ala	H-2-Kb	8	6	6	KPYVRALL	KPYVRTLL	SMMPMBEC	299.047	872.449	2.917	284	0.183	444.969	1488.139	3.344	2139.21	572.44	2069	1065.6	907.277206	317.4972734	872.4489012	299.0473787	M6_p20	0.885714286	0.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.187	284	0	0	NA	15qB3.1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.878207276	sgMsh2	cell line
chr15	76072463	76072463	A	G	ENSMUST00000100527.12	1	ENSMUSG00000002524	missense	F/L	157	Puf60	ENSMUST00000100527.12:c.469T>C	ENSMUSP00000098096.4:p.Phe157Leu	H-2-Kb	9	3	9	TIRQAFAPL	TIRQAFAPF	NetMHC	20.13	228.85	11.369	94	0.181	160.367	329.743	2.056	228.85	20.13	205.2	65.4	430.63567	255.3347944	470.1646793	271.8003427	M6_p20	0.085714286	0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.169	94	0	0	NA	15qD3	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.793673955	sgMsh2	cell line
chr15	16823315	16823315	CA	C	ENSMUST00000228307.1	NA	ENSMUSG00000025370	FS	K/X	128	Cdh9	ENSMUST00000228307.1:c.383del	ENSMUSP00000154022.1:p.Lys128ArgfsTer3	H-2-Kb	9	4	8	SLYILRARL	SLYILRAKA	NetMHC	34.72	2987.65	86.05	136	0.051	138.433	2844.375	20.547	2987.65	34.72	2701.1	48.7	4386.417848	267.9847002	2662.257137	228.165512	M6_p20	0.514285714	1.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.059	136	0	0	NA	15qA2	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.27708144	sgMsh2	cell line
chr15	28378421	28378421	T	C	ENSMUST00000067048.7	5	ENSMUSG00000022262	missense	F/L	2968	Dnah5	ENSMUST00000067048.7:c.8902T>C	ENSMUSP00000069751.6:p.Phe2968Leu	H-2-Kb	9	3	9	QSLTRLASL	QSLTRLASF	NetMHC	48.02	238.26	4.962	210	0.143	133.757	254.704	1.904	238.26	48.02	526.7	122.6	244.4049514	144.9138851	265.0025177	153.196908	M6_p20	1.028571429	1.028571429	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.14	210	0	0	NA	15qB1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.657481383	sgMsh2	cell line
chr15	28421022	28421022	A	G	ENSMUST00000067048.7	5	ENSMUSG00000022262	missense	E/G	3835	Dnah5	ENSMUST00000067048.7:c.11504A>G	ENSMUSP00000069751.6:p.Glu3835Gly	H-2-Kb	9	9	3	VNGMYQTSL	VNEMYQTSL	NetMHCpan	62.8	176.2	2.806	353	0.04	116.107	209.221	1.802	162.72	81.12	176.2	62.8	362.3347605	174.6264398	242.2423104	151.0949676	M6_p20	-0.142857143	-0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.043	353	0	0	NA	15qB1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.201940711	sgMsh2	cell line
chr14	57480701	57480701	T	C	ENSMUST00000122063.7	1	ENSMUSG00000040040	missense	M/T	577	Ift88	ENSMUST00000122063.7:c.1730T>C	ENSMUSP00000113768.1:p.Met577Thr	H-2-Kb	9	5	7	QAIEWLTQL	QAIEWLMQL	NetMHC	144.21	130.29	0.903	220	0.073	232.952	219.487	0.942	130.29	144.21	188.3	221.5	250.6744092	244.4049514	289.2344371	260.7654204	M6_p20	0.5	0.5	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.074	220	0	0	NA	14qC3	chr14-53105048-123291781	3	2	1	0.93	4.367554902	NA	1	0.347525874	sgMsh2	cell line
chr14	56804452	56804452	AT	A	ENSMUST00000173954.2	1	ENSMUSG00000040123	FS	N/X	123	Zmym5	ENSMUST00000173954.2:c.368del	ENSMUSP00000134057.1:p.Asn123MetfsTer18	H-2-Kb	9	8	4	STKMWISPL	NA	NetMHCpan	170.5	NA	NA	100	0.28	280.012	NA	NA	NA	207.45	NA	170.5	NA	447.8267173	NA	352.5737704	M6_p20	0.428571429	0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.291	100	0	0	NA	14qC3	chr14-53105048-123291781	3	2	1	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr14	56761852	56761852	A	C	ENSMUST00000022507.12	1	ENSMUSG00000021938	missense	L/V	316	Pspc1	ENSMUST00000022507.12:c.946T>G	ENSMUSP00000022507.5:p.Leu316Val	H-2-Kb	9	11	1	VMLMRQDLM	LMLMRQDLM	SMM	117.249	337.373	2.877	136	0.301	170.678	505.031	2.959	672.69	215.68	1505.6	463.1	337.3727491	117.2492302	325.2744865	125.6753201	M6_p20	-0.014285714	0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.313	136	0	0	NA	14qC3	chr14-53105048-123291781	3	2	1	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr15	74839366	74839366	T	G	ENSMUST00000170259.2	1	ENSMUSG00000075604	missense	K/N	154	Cyp11b1	ENSMUST00000170259.2:c.462A>C	ENSMUSP00000127888.1:p.Lys154Asn	H-2-Kb	9	11	1	NAVQKFVPL	KAVQKFVPL	NetMHCpan	220.9	59.7	0.27	185	0.168	302.852	117.78	0.389	61.28	241.58	59.7	220.9	209.947158	454.0566075	174.2809827	364.1245828	M6_p20	0.857142857	0.857142857	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.158	185	0	0	NA	15qD3	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.742014704	sgMsh2	cell line
chr14	123515710	123515710	C	A	ENSMUST00000000201.6	5	ENSMUSG00000000197	missense	R/I	288	Nalcn	ENSMUST00000000201.6:c.863G>T	ENSMUSP00000000201.5:p.Arg288Ile	H-2-Kb	9	5	7	WVFLMYIAI	WVFLMYRAI	SMM	126.506	178.694	1.413	182	0.093	190.437	187.572	0.985	117.77	251.38	308	1796.8	178.6940122	126.5056726	196.4490803	129.4941055	M6_p20	2.571428571	2.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.11	182	0	0	NA	14qE5	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	sgMsh2	cell line
chr15	76622252	76622252	GT	G	ENSMUST00000078803.4	1	ENSMUSG00000115987	FS	N/X	216	Vps28	ENSMUST00000078803.4:c.647del	ENSMUSP00000077856.3:p.Asn216ThrfsTer?	H-2-Kb	9	5	7	SAYNAFTAS	SAYNAFNRF	SMM	204.226	61.96	0.303	287	0.073	329.815	52.55	0.159	43.14	281.84	34.5	452.4	61.95979897	204.225515	87.54876014	377.7896015	M6_p20	0.014285714	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.073	287	0	0	NA	15qD3	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.342829578	sgMsh2	cell line
chr15	10988924	10988924	T	C	ENSMUST00000070877.6	1	ENSMUSG00000022244	missense	F/L	239	Amacr	ENSMUST00000070877.6:c.715T>C	ENSMUSP00000066915.5:p.Phe239Leu	H-2-Kb	9	7	5	IEPQLYALL	IEPQFYALL	NetMHC	319.08	19.25	0.06	145	0.214	409.155	102.272	0.25	19.25	319.08	89.7	836.6	114.8444468	421.8033261	121.6886295	396.5062159	M6_p20	0.971428571	0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.213	145	0	0	NA	15qA1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr15	58889378	58889378	T	G	ENSMUST00000036904.6	1	ENSMUSG00000037075	missense	L/R	22	Rnf139	ENSMUST00000036904.6:c.65T>G	ENSMUSP00000046467.6:p.Leu22Arg	H-2-Kb	9	7	5	VWAAREVAL	VWAALEVAL	SMM	127.09	314.855	2.477	52	0.154	252.097	659.527	2.616	830.12	321.7	1526	1179.2	314.8545691	127.0895963	488.9337312	182.4945923	M6_p20	0.771428571	0.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	52	0	0	NA	15qD1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.939259119	sgMsh2	cell line
chr15	8186270	8186270	T	C	ENSMUST00000110617.1	5	ENSMUSG00000039801	missense	S/P	437	Cplane1	ENSMUST00000110617.1:c.1309T>C	ENSMUSP00000106247.1:p.Ser437Pro	H-2-Kb	9	6	6	TMLMRPLLL	TMLMRSLLL	SMMPMBEC	167.591	105.986	0.632	274	0.182	198.772	126.543	0.637	157.73	391.88	147.1	226.5	93.13437404	171.044849	105.9863656	167.5907328	M6_p20	1.571428571	1.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.174	274	0	0	NA	15qA1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.817155433	sgMsh2	cell line
chr15	44529215	44529215	G	A	ENSMUST00000209244.1	5	ENSMUSG00000038725	missense	A/T	1649	Pkhd1l1	ENSMUST00000209244.1:c.4945G>A	ENSMUSP00000147447.1:p.Ala1649Thr	H-2-Kb	9	10	2	KTFDRRFVL	KAFDRRFVL	NetMHCpan	135.6	169	1.246	446	0.143	330.834	247.696	0.749	323.78	401.27	169	135.6	255.9234019	352.4601324	239.4693856	309.2074862	M6_p20	0.157142857	0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.148	446	0	0	NA	15qB3.2	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.695051748	sgMsh2	cell line
chr15	60823463	60823463	A	T	ENSMUST00000100635.4	1	ENSMUSG00000072568	missense	L/M	145	Lratd2	ENSMUST00000100635.4:c.433T>A	ENSMUSP00000098200.3:p.Leu145Met	H-2-Kb	9	8	4	VVHMHRLEV	VVHLHRLEV	NetMHC	414.3	407.58	0.984	79	0.114	438.755	420.67	0.959	407.58	414.3	821.9	739.1	359.0128555	432.6233939	433.7604991	444.8872915	M6_p20	-0.642857143	0.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.132	79	0	0	NA	15qD1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.619911018	sgMsh2	cell line
chr14	103177262	103177262	GA	G	ENSMUST00000159855.7	1	ENSMUSG00000033004	FS	F/X	2571	Mycbp2	ENSMUST00000159855.7:c.7713del	ENSMUSP00000124710.1:p.Gln2573ArgfsTer14	H-2-Kb	9	9	5	AFFPRNLKL	AFFPQEPKT	NetMHCpan	344.2	14946.7	43.424	169	0.349	446.4	7207.152	16.145	10007.64	580.16	14946.7	344.2	4406.664633	526.1505152	4001.750427	366.6485738	M6_p20	-0.442857143	0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.359	169	0	0	NA	14qE2.3	chr14-53105048-123291781	3	2	1	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr15	44529215	44529215	G	A	ENSMUST00000209244.1	5	ENSMUSG00000038725	missense	A/T	1649	Pkhd1l1	ENSMUST00000209244.1:c.4945G>A	ENSMUSP00000147447.1:p.Ala1649Thr	H-2-Kb	9	11	1	TFDRRFVLL	AFDRRFVLL	SMMPMBEC	285.266	359.129	1.259	446	0.143	470.294	571.727	1.216	726.48	586.5	1323.1	1051.3	416.9749833	354.0870144	359.1286062	285.2659918	M6_p20	0.3	0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.148	446	0	0	NA	15qB3.2	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.695051748	sgMsh2	cell line
chr16	16673096	16673096	T	C	ENSMUST00000206365.2	3	ENSMUSG00000048101	missense	K/R	295	Olfr19	ENSMUST00000206365.2:c.884A>G	ENSMUSP00000145655.2:p.Lys295Arg	H-2-Db	9	6	6	YSLRNRDLM	YSLRNKDLM	NetMHC	3.3	4.46	1.352	142	0.176	5.853	8.806	1.505	4.46	3.3	5.9	4.6	11.71170164	7.105914866	14.27479894	9.496640546	M6_p20	-0.928571429	-0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.185	142	0	0	NA	16qA3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.868814685	sgMsh2	cell line
chr16	3592590	3592590	A	G	ENSMUST00000216259.1	5	ENSMUSG00000051003	missense	S/G	65	Olfr161	ENSMUST00000216259.1:c.193A>G	ENSMUSP00000150825.1:p.Ser65Gly	H-2-Db	9	8	4	FFLGNLSFV	FFLSNLSFV	SMM	191.699	80.282	0.419	170	0.041	456.264	114.023	0.25	99.94	647.94	502	1445.2	80.28233585	191.6990674	128.1061561	264.5879126	M6_p20	1.414285714	1.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.054	170	0	0	NA	16qA1	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	sgMsh2	cell line
chr15	83879517	83879517	A	G	ENSMUST00000156187.7	1	ENSMUSG00000022441	missense	F/L	1205	Efcab6	ENSMUST00000156187.7:c.3613T>C	ENSMUSP00000114909.1:p.Phe1205Leu	H-2-Kb	8	4	8	IVQEFENL	IVQEFENF	NetMHC	14.19	459.52	32.383	363	0.096	32.907	530.167	16.111	459.52	14.19	438.8	27.2	627.6824703	38.61357391	600.8139392	47.83436356	M6_p20	-0.457142857	-0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.104	363	0	0	NA	15qE2	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.488414742	sgMsh2	cell line
chr15	85816500	85816500	A	G	ENSMUST00000064370.5	NA	ENSMUSG00000052496	missense	V/A	1745	Pkdrej	ENSMUST00000064370.5:c.5234T>C	ENSMUSP00000086352.2:p.Val1745Ala	H-2-Kb	8	5	7	VYHSYGAL	VYHSYGVL	NetMHC	51.44	205.07	3.987	296	0.145	81.16	186.929	2.303	205.07	51.44	153.8	90.3	195.3169797	82.93541077	178.5418375	79.38528349	M6_p20	-0.2	-0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.141	296	0	0	NA	15qE2	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.662177679	sgMsh2	cell line
chr16	3592590	3592590	A	G	ENSMUST00000216259.1	5	ENSMUSG00000051003	missense	S/G	65	Olfr161	ENSMUST00000216259.1:c.193A>G	ENSMUSP00000150825.1:p.Ser65Gly	H-2-Kb	8	6	6	MYFFLGNL	MYFFLSNL	NetMHCpan	34	14.7	0.432	170	0.041	89.071	59.088	0.663	49.51	88.66	14.7	34	68.66572344	89.4828896	80.11982647	98.3422182	M6_p20	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.054	170	0	0	NA	16qA1	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	sgMsh2	cell line
chr15	94338749	94338749	A	C	ENSMUST00000035342.10	1	ENSMUSG00000022449	missense	S/A	797	Adamts20	ENSMUST00000035342.10:c.2389T>G	ENSMUSP00000036330.4:p.Ser797Ala	H-2-Kb	8	4	8	AVFEYSGA	AVFEYSGS	NetMHC	141.13	803.55	5.694	114	0.114	224.534	515.987	2.298	803.55	141.13	976.2	228.4	170.1139779	273.9933359	228.4230889	220.6683258	M6_p20	0.4	0.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.117	114	0	0	NA	15qE3	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.549466584	sgMsh2	cell line
chr15	100190056	100190056	T	C	ENSMUST00000100203.9	1	ENSMUSG00000023026	missense	V/A	957	Dip2b	ENSMUST00000100203.9:c.2870T>C	ENSMUSP00000097777.3:p.Val957Ala	H-2-Kb	8	7	5	ASVMAGNL	ASVMVGNL	NetMHC	249.4	155.85	0.625	246	0.065	304.177	234.725	0.772	155.85	249.4	254.3	361	261.0597994	332.4604589	215.149331	275.892567	M6_p20	1	1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.069	246	0	0	NA	15qF1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.324044396	sgMsh2	cell line
chr16	3592523	3592523	GA	G	ENSMUST00000216259.1	5	ENSMUSG00000051003	FS	G/X	42	Olfr161	ENSMUST00000216259.1:c.128del	ENSMUSP00000150825.1:p.Asn43ThrfsTer46	H-2-Kb	8	47	0	LSLRYWPF	NA	NetMHCpan	130.4	NA	NA	146	0.062	210.41	NA	NA	NA	465.62	NA	130.4	NA	248.7367755	NA	172.0838049	M6_p20	-0.357142857	-0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.078	146	0	0	NA	16qA1	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	sgMsh2	cell line
chr15	100312997	100312997	AG	A	ENSMUST00000067752.4	1	ENSMUSG00000054619	FS	G/X	168	Mettl7a1	ENSMUST00000067752.4:c.505del	ENSMUSP00000065271.3:p.Ala169LeufsTer36	H-2-Kb	8	36	0	LSGSFFLM	NA	NetMHCpan	303	NA	NA	161	0.13	470.002	NA	NA	NA	668.95	NA	303	NA	546.6885777	NA	393.3145385	M6_p20	1.328571429	1.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.129	161	0	0	NA	15qF1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.605822132	sgMsh2	cell line
chr16	17278046	17278046	T	C	ENSMUST00000164950.10	3	ENSMUSG00000055692	missense	V/A	260	Tmem191c	ENSMUST00000164950.10:c.779T>C	ENSMUSP00000131127.1:p.Val260Ala	H-2-Kb	8	6	6	LPLIYAVL	LPLIYVVL	SMMPMBEC	121.546	350.542	2.884	18	0.278	389.144	1197.543	3.077	4905.08	889.63	2041.3	655.9	353.7854762	122.3883275	350.5419514	121.5458122	M6_p20	2.171428571	2.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.334	18	0	0	NA	16qA3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	2	1	sgMsh2	cell line
chr15	83496310	83496310	T	G	ENSMUST00000016897.11	1	ENSMUSG00000022442	missense	I/L	285	Ttll1	ENSMUST00000016897.11:c.853A>C	ENSMUSP00000016897.4:p.Ile285Leu	H-2-Kb	8	4	8	TSKLFDEL	TSKLFDEI	SMMPMBEC	347.328	1994.068	5.741	69	0.072	428.98	2320.22	5.409	5756.24	956.85	2286.8	495.1	2353.639803	362.8607551	1994.068165	347.3281635	M6_p20	-0.185714286	-0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.091	69	0	0	NA	15qE1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.427362899	sgMsh2	cell line
chr15	85816500	85816500	A	G	ENSMUST00000064370.5	NA	ENSMUSG00000052496	missense	V/A	1745	Pkdrej	ENSMUST00000064370.5:c.5234T>C	ENSMUSP00000086352.2:p.Val1745Ala	H-2-Kb	9	4	8	WVYHSYGAL	WVYHSYGVL	NetMHC	52.34	145.67	2.783	296	0.145	78.726	132.471	1.683	145.67	52.34	123	69.5	141.9416992	100.7186741	108.9557112	87.95286685	M6_p20	-0.2	-0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.141	296	0	0	NA	15qE2	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.662177679	sgMsh2	cell line
chr16	3592590	3592590	A	G	ENSMUST00000216259.1	5	ENSMUSG00000051003	missense	S/G	65	Olfr161	ENSMUST00000216259.1:c.193A>G	ENSMUSP00000150825.1:p.Ser65Gly	H-2-Kb	9	5	7	PMYFFLGNL	PMYFFLSNL	SMM	22.862	15.35	0.671	170	0.041	43.133	26.875	0.623	34.5	54.11	28.5	71.6	15.35005727	22.86177783	25.24933823	32.15511003	M6_p20	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.054	170	0	0	NA	16qA1	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	sgMsh2	cell line
chr16	16262686	16262686	C	T	ENSMUST00000039408.2	1	ENSMUSG00000041957	missense	T/I	612	Pkp2	ENSMUST00000039408.2:c.1835C>T	ENSMUSP00000036890.2:p.Thr612Ile	H-2-Kb	9	8	4	RNYIQEASL	RNYTQEASL	NetMHCpan	98.4	119	1.209	181	0.16	155.481	189.736	1.22	136.19	102.46	119	98.4	243.2820126	208.5018919	276.216743	236.1837425	M6_p20	0.142857143	0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.148	181	0	0	NA	16qA2	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.695051748	sgMsh2	cell line
chr15	98126427	98126427	G	T	ENSMUST00000051226.7	1	ENSMUSG00000033065	missense	G/C	439	Pfkm	ENSMUST00000051226.7:c.1315G>T	ENSMUSP00000059801.6:p.Gly439Cys	H-2-Kb	9	7	5	VVHDCFEGL	VVHDGFEGL	NetMHC	110.43	431.59	3.908	203	0.064	228.926	428.227	1.871	431.59	110.43	423.6	235.2	439.6529586	227.0439846	424.864065	230.8075441	M6_p20	-0.214285714	0.5	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.077	203	0	0	NA	15qF1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.361614761	sgMsh2	cell line
chr15	98722600	98722600	T	C	ENSMUST00000003444.5	1	ENSMUSG00000003354	missense	V/A	373	Ccdc65	ENSMUST00000003444.5:c.1118T>C	ENSMUSP00000003444.4:p.Val373Ala	H-2-Kb	9	4	8	VLPFYSSAL	VLPFYSSVL	NetMHCpan	74.7	120	1.606	66	0.197	232.404	459.991	1.979	432.33	118.78	120	74.7	487.6519891	346.02701	514.3396441	415.1929781	M6_p20	0.557142857	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.203	66	0	0	NA	15qF1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.953348005	sgMsh2	cell line
chr15	98722600	98722600	T	C	ENSMUST00000003444.5	1	ENSMUSG00000003354	missense	V/A	373	Ccdc65	ENSMUST00000003444.5:c.1118T>C	ENSMUSP00000003444.4:p.Val373Ala	H-2-Kb	9	3	9	KVLPFYSSA	KVLPFYSSV	NetMHC	163.72	20.12	0.123	66	0.197	422.853	92.661	0.219	20.12	163.72	23.1	198.4	162.2220929	647.3065476	211.9580913	731.5600821	M6_p20	0.557142857	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.203	66	0	0	NA	15qF1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.953348005	sgMsh2	cell line
chr16	21937998	21937998	T	G	ENSMUST00000023562.8	1	ENSMUSG00000022856	missense	S/R	124	Tmem41a	ENSMUST00000023562.8:c.370A>C	ENSMUSP00000023562.7:p.Ser124Arg	H-2-Kb	9	9	3	LSRLFGKQL	LSSLFGKQL	NetMHC	258.33	976.86	3.781	35	0.114	469.166	1017.143	2.168	976.86	258.33	813.4	435.7	1442.480663	590.3505878	1057.426037	502.6318444	M6_p20	-0.271428571	0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.147	35	0	0	NA	16qB1	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.690355452	sgMsh2	cell line
chr16	3592523	3592523	GA	G	ENSMUST00000216259.1	5	ENSMUSG00000051003	FS	G/X	42	Olfr161	ENSMUST00000216259.1:c.128del	ENSMUSP00000150825.1:p.Asn43ThrfsTer46	H-2-Kb	9	39	0	WMYASPPPL	NA	NetMHCpan	187.9	NA	NA	146	0.062	209.738	NA	NA	NA	330.1	NA	187.9	NA	192.357888	NA	227.1171867	M6_p20	-0.185714286	-0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.078	146	0	0	NA	16qA1	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	sgMsh2	cell line
chr16	17278046	17278046	T	C	ENSMUST00000164950.10	3	ENSMUSG00000055692	missense	V/A	260	Tmem191c	ENSMUST00000164950.10:c.779T>C	ENSMUSP00000131127.1:p.Val260Ala	H-2-Kb	9	5	7	VLPLIYAVL	VLPLIYVVL	NetMHCpan	106.2	467.7	4.404	18	0.278	396.138	695.276	1.755	1957.98	333.87	467.7	106.2	769.3252737	533.469998	621.2265381	458.4056903	M6_p20	2.171428571	2.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.334	18	0	0	NA	16qA3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	2	1	sgMsh2	cell line
chr16	17342352	17342352	T	C	ENSMUST00000023450.14	1	ENSMUSG00000022766	missense	V/A	371	Serpind1	ENSMUST00000023450.14:c.1112T>C	ENSMUSP00000023450.6:p.Val371Ala	H-2-Kb	9	5	7	TNRTREALL	TNRTREVLL	SMMPMBEC	176.299	238.919	1.355	75	0.107	291.863	432.697	1.483	594.93	396.18	2092.8	1411.6	270.4643321	187.5469475	238.9186213	176.2990613	M6_p20	-0.542857143	-0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.142	75	0	0	NA	16qA3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.666873974	sgMsh2	cell line
chr17	3453370	3453370	T	G	ENSMUST00000072156.6	1	ENSMUSG00000023800	missense	F/V	941	Tiam2	ENSMUST00000072156.6:c.2821T>G	ENSMUSP00000072020.6:p.Phe941Val	H-2-Db	9	4	8	HQHLNRIVI	HQHLNRIFI	NetMHC	52.68	34.23	0.65	528	0.172	177.453	103.995	0.586	34.23	52.68	102.4	240	105.5893217	162.7871051	145.4018727	192.1188596	M6_p20	0.828571429	0.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.168	528	0	0	NA	17qA1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.78897766	sgMsh2	cell line
chr16	70492004	70492004	A	G	ENSMUST00000163832.7	5	ENSMUSG00000022707	missense	Y/C	469	Gbe1	ENSMUST00000163832.7:c.1406A>G	ENSMUSP00000132603.1:p.Tyr469Cys	H-2-Db	9	4	8	YTLTNRRCL	YTLTNRRYL	NetMHC	57.62	16.28	0.283	505	0.182	263.904	44.932	0.17	16.28	57.62	25.8	169.2	64.06487749	358.6080216	77.90583738	381.5662905	M6_p20	-0.442857143	-0.442857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.182	505	0	0	NA	16qC2	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.854725798	sgMsh2	cell line
chr16	36615278	36615278	A	G	ENSMUST00000089620.10	1	ENSMUSG00000022901	missense	L/P	259	Cd86	ENSMUST00000089620.10:c.776T>C	ENSMUSP00000087047.4:p.Leu259Pro	H-2-Db	9	4	8	VALLLVMPL	VALLLVMLL	SMM	119.845	386.029	3.221	231	0.165	259.265	1602.2	6.18	2784.09	391.89	5782.3	529.9	386.0290606	119.8450221	420.3102682	126.639737	M6_p20	2.814285714	3.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.158	231	0	0	NA	16qB3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.742014704	sgMsh2	cell line
chr17	19812337	19812337	C	A	ENSMUST00000172203.1	5	ENSMUSG00000091771	missense	T/N	791	Vmn2r103	ENSMUST00000172203.1:c.2372C>A	ENSMUSP00000126756.1:p.Thr791Asn	H-2-Db	9	7	5	CVWVNFLPV	CVWVTFLPV	SMM	162.787	7899.871	48.529	383	0.209	365.39	9389.201	25.696	10878.53	567.26	12089.5	717.2	7899.871007	162.7871051	7154.346992	163.5196692	M6_p20	1.285714286	1.871428571	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.22	383	0	0	NA	17qA3.2	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr16	37818952	37818952	T	C	ENSMUST00000114763.2	1	ENSMUSG00000022816	missense	Y/H	71	Fstl1	ENSMUST00000114763.2:c.211T>C	ENSMUSP00000110411.2:p.Tyr71His	H-2-Db	9	9	3	KTHLNHCEL	KTYLNHCEL	NetMHCpan	269.5	150.1	0.557	196	0.153	479.168	336.922	0.703	635.98	663.95	150.1	269.5	368.6548909	458.7963984	305.1897897	499.53969	M6_p20	-0.471428571	-0.471428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.169	196	0	0	NA	16qB3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.793673955	sgMsh2	cell line
chr17	21262216	21262216	A	T	ENSMUST00000236821.1	NA	ENSMUSG00000050102	missense	I/L	268	Vmn1r235	ENSMUST00000236821.1:c.802A>T	ENSMUSP00000158023.1:p.Ile268Leu	H-2-Kb	8	4	8	STFMLCYL	STFMLCYI	NetMHC	17.34	131.75	7.598	368	0.098	25.435	157.647	6.198	131.75	17.34	66.9	18.9	220.1608027	33.94220093	183.5439188	31.96980594	M6_p20	1.828571429	1.828571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.105	368	0	0	NA	17qA3.2	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.493111037	sgMsh2	cell line
chr16	32959460	32959460	T	C	ENSMUST00000135193.8	5	ENSMUSG00000022801	missense	C/R	236	Lrch3	ENSMUST00000135193.8:c.706T>C	ENSMUSP00000130708.1:p.Cys236Arg	H-2-Kb	8	8	4	IPVRYRNL	IPVCYRNL	SMM	25.395	50.089	1.972	116	0.164	26.67	75.164	2.818	92.42	26.87	346.6	278.9	50.08872766	25.39451951	57.90819124	26.4691503	M6_p20	-1.057142857	-0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.169	116	0	0	NA	16qB3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.793673955	sgMsh2	cell line
chr17	19812337	19812337	C	A	ENSMUST00000172203.1	5	ENSMUSG00000091771	missense	T/N	791	Vmn2r103	ENSMUST00000172203.1:c.2372C>A	ENSMUSP00000126756.1:p.Thr791Asn	H-2-Kb	8	8	4	VWVNFLPV	VWVTFLPV	NetMHC	75.65	99.44	1.314	383	0.209	162.833	141.568	0.869	99.44	75.65	190.6	182	146.1302072	162.4575876	137.0061303	163.2074578	M6_p20	1.285714286	1.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.22	383	0	0	NA	17qA3.2	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr17	18277423	18277423	T	A	ENSMUST00000172190.3	5	ENSMUSG00000090417	missense	D/V	29	Vmn2r94	ENSMUST00000172190.3:c.86A>T	ENSMUSP00000126386.2:p.Asp29Val	H-2-Kb	8	11	1	VNYVQYNF	DNYVQYNF	NetMHCpan	60.6	3963.3	65.401	281	0.146	102.319	3678.76	35.954	5001.49	77.07	3963.3	60.6	2258.083514	127.5674869	3394.220093	183.9670312	M6_p20	-0.871428571	-0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.155	281	0	0	NA	17qA3.2	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.727925817	sgMsh2	cell line
chr16	58926453	58926453	T	C	ENSMUST00000205986.3	2	ENSMUSG00000090951	missense	I/M	39	Olfr181	ENSMUST00000205986.3:c.117A>G	ENSMUSP00000145877.2:p.Ile39Met	H-2-Kb	8	5	7	AIYLVTMV	AIYLVTIV	NetMHC	143.87	786.44	5.466	354	0.172	259.507	804.095	3.099	786.44	143.87	1131.3	680.2	620.4974485	238.6382195	821.7505435	280.3754606	M6_p20	2.371428571	2.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.17	354	0	0	NA	16qC1.3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.798370251	sgMsh2	cell line
chr16	64926197	64926197	G	A	ENSMUST00000063076.5	1	ENSMUSG00000050783	missense	S/F	244	Htr1f	ENSMUST00000063076.5:c.731C>T	ENSMUSP00000063136.4:p.Ser244Phe	H-2-Kb	8	7	5	LVSTFYML	LVSTSYML	NetMHCpan	110.1	3406	30.936	213	0.174	233.792	5453.403	23.326	4857.02	174.67	3406	110.1	6049.785825	318.2291802	6349.506908	292.9139126	M6_p20	1.414285714	1.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.181	213	0	0	NA	16qC1.3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.850029502	sgMsh2	cell line
chr16	95295629	95295629	A	C	ENSMUST00000113862.7	1	ENSMUSG00000062609	missense	S/R	37	Kcnj15	ENSMUST00000113862.7:c.109A>C	ENSMUSP00000109493.1:p.Ser37Arg	H-2-Kb	8	7	5	LGMSRAPL	LGMSSAPL	NetMHC	207.08	176.94	0.854	195	0.077	301.698	266.937	0.885	176.94	207.08	236.2	220.8	417.5802981	680.361923	297.6733808	382.5956254	M6_p20	0.028571429	0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.083	195	0	0	NA	16qC4	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.389792534	sgMsh2	cell line
chr16	63773391	63773391	C	CA	ENSMUST00000064405.7	1	ENSMUSG00000052504	FS	L/FX	111	Epha3	ENSMUST00000064405.7:c.332dup	ENSMUSP00000066554.6:p.Leu111PhefsTer11	H-2-Kb	8	9	3	IPFGFGDL	NA	SMMPMBEC	51.968	NA	NA	102	0.127	131.126	NA	NA	NA	209.44	NA	512	NA	52.8128981	NA	51.96847826	M6_p20	0.5	0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.129	102	0	0	NA	16qC1.3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.605822132	sgMsh2	cell line
chr16	58915901	58915901	GA	G	ENSMUST00000171656.2	2	ENSMUSG00000090629	FS	S/X	247	Olfr180	ENSMUST00000171656.2:c.739del	ENSMUSP00000128358.1:p.Ser247LeufsTer31	H-2-Kb	8	31	0	KTYQWLYF	NA	NetMHCpan	200.7	NA	NA	176	0.097	382.912	NA	NA	NA	489.31	NA	200.7	NA	445.3895263	NA	320.4350395	M6_p20	-0.157142857	-0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.085	176	0	0	NA	16qC1.2	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.399185125	sgMsh2	cell line
chr16	58915901	58915901	GA	G	ENSMUST00000171656.2	2	ENSMUSG00000090629	FS	S/X	247	Olfr180	ENSMUST00000171656.2:c.739del	ENSMUSP00000128358.1:p.Ser247LeufsTer31	H-2-Kb	8	29	0	VIKTYQWL	NA	SMM	154.433	NA	NA	176	0.097	282.366	NA	NA	NA	556.53	NA	386.6	NA	154.4329616	NA	178.1312026	M6_p20	-0.285714286	-0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.085	176	0	0	NA	16qC1.2	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.399185125	sgMsh2	cell line
chr16	32961669	32961669	A	G	ENSMUST00000135193.8	5	ENSMUSG00000022801	missense	Y/C	271	Lrch3	ENSMUST00000135193.8:c.812A>G	ENSMUSP00000130708.1:p.Tyr271Cys	H-2-Kb	8	5	7	KIHIFKCL	KIHIFKYL	SMMPMBEC	256.886	92.628	0.361	183	0.087	319.381	76.184	0.239	59.74	598.73	59.4	324.9	102.9769442	313.8629122	92.62751223	256.8857419	M6_p20	1.571428571	1.571428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.095	183	0	0	NA	16qB3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.446148081	sgMsh2	cell line
chr17	20540614	20540614	G	T	ENSMUST00000167093.2	5	ENSMUSG00000090572	missense	P/H	827	Vmn2r109	ENSMUST00000167093.2:c.2480C>A	ENSMUSP00000132641.1:p.Pro827His	H-2-Kb	8	5	7	LGFIFAHK	LGFIFAPK	SMMPMBEC	60.22	40.902	0.679	284	0.113	399.253	288.671	0.723	784.23	932.66	508.2	692.4	69.1416915	106.106014	40.90157201	60.21989584	M6_p20	0.628571429	1.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.11	284	0	0	NA	17qA3.2	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.516592515	sgMsh2	cell line
chr16	32959460	32959460	T	C	ENSMUST00000135193.8	5	ENSMUSG00000022801	missense	C/R	236	Lrch3	ENSMUST00000135193.8:c.706T>C	ENSMUSP00000130708.1:p.Cys236Arg	H-2-Kb	9	7	5	VIPVRYRNL	VIPVCYRNL	NetMHC	4.32	5.83	1.35	116	0.164	39.398	84.597	2.147	5.83	4.32	35.5	30.7	133.6934098	48.0961153	179.9906727	63.8631006	M6_p20	-1.057142857	0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.169	116	0	0	NA	16qB3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.793673955	sgMsh2	cell line
chr16	70495379	70495379	GA	G	ENSMUST00000163832.7	5	ENSMUSG00000022707	FS	E/X	533	Gbe1	ENSMUST00000163832.7:c.1599del	ENSMUSP00000132603.1:p.Gly534AlafsTer36	H-2-Kb	9	13	0	ISISWVMSL	NA	NetMHC	16.3	NA	NA	220	0.141	93.705	NA	NA	NA	16.3	NA	19.1	NA	168.310031	NA	180.8214719	M6_p20	1.7	1.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.141	220	0	0	NA	16qC2	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.662177679	sgMsh2	cell line
chr17	20994614	20994614	T	C	ENSMUST00000237195.1	NA	ENSMUSG00000045575	missense	I/V	25	Vmn1r233	ENSMUST00000237195.1:c.73A>G	ENSMUSP00000158452.1:p.Ile25Val	H-2-Kb	9	3	9	VIILFQTMV	VIILFQTMI	NetMHC	46.04	63.11	1.371	247	0.061	142.11	130.172	0.916	63.11	46.04	89.3	129.3	171.044849	154.920896	194.6480243	188.4733717	M6_p20	1.857142857	2.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.063	247	0	0	NA	17qA3.2	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.295866622	sgMsh2	cell line
chr16	36615278	36615278	A	G	ENSMUST00000089620.10	1	ENSMUSG00000022901	missense	L/P	259	Cd86	ENSMUST00000089620.10:c.776T>C	ENSMUSP00000087047.4:p.Leu259Pro	H-2-Kb	9	4	8	VALLLVMPL	VALLLVMLL	NetMHC	63.11	150.8	2.389	231	0.165	124.012	228.193	1.84	150.8	63.11	354.9	84.3	208.5018919	163.7231154	247.8848587	177.9303365	M6_p20	2.814285714	3.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.158	231	0	0	NA	16qB3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.742014704	sgMsh2	cell line
chr17	13225949	13225949	T	C	ENSMUST00000080647.4	1	ENSMUSG00000073458	missense	C/R	138	Smok2a	ENSMUST00000080647.4:c.412T>C	ENSMUSP00000094432.2:p.Cys138Arg	H-2-Kb	9	8	4	INYRHNQGI	INYCHNQGI	NetMHCpan	30	54.9	1.83	1124	0.028	105.887	125.761	1.188	188.04	80.78	54.9	30	133.6934098	144.9138851	117.8284053	130.9935766	M6_p20	-1.7	-1.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.03	1124	0	0	NA	17qA1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.140888868	sgMsh2	cell line
chr16	32959460	32959460	T	C	ENSMUST00000135193.8	5	ENSMUSG00000022801	missense	C/R	236	Lrch3	ENSMUST00000135193.8:c.706T>C	ENSMUSP00000130708.1:p.Cys236Arg	H-2-Kb	9	10	2	VRYRNLRHL	VCYRNLRHL	NetMHC	134.72	74.69	0.554	116	0.164	264.699	138.58	0.524	74.69	134.72	91.7	491.7	220.8564057	228.6177783	185.4598909	300.7807237	M6_p20	-1.342857143	-1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.169	116	0	0	NA	16qB3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.793673955	sgMsh2	cell line
chr16	70495379	70495379	GA	G	ENSMUST00000163832.7	5	ENSMUSG00000022707	FS	E/X	533	Gbe1	ENSMUST00000163832.7:c.1599del	ENSMUSP00000132603.1:p.Gly534AlafsTer36	H-2-Kb	9	15	0	ISWVMSLGI	NA	NetMHCpan	153.2	NA	NA	220	0.141	220.364	NA	NA	NA	164.6	NA	153.2	NA	276.1277156	NA	353.3865369	M6_p20	1.757142857	1.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.141	220	0	0	NA	16qC2	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.662177679	sgMsh2	cell line
chr17	19812337	19812337	C	A	ENSMUST00000172203.1	5	ENSMUSG00000091771	missense	T/N	791	Vmn2r103	ENSMUST00000172203.1:c.2372C>A	ENSMUSP00000126756.1:p.Thr791Asn	H-2-Kb	9	8	4	VWVNFLPVF	VWVTFLPVF	SMM	97.524	101.184	1.038	383	0.209	160.102	200.409	1.252	253.84	177.89	795.3	731	101.1835704	97.52366186	146.9772103	142.3147781	M6_p20	1.814285714	1.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.22	383	0	0	NA	17qA3.2	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr16	33975874	33975874	A	G	ENSMUST00000076810.11	5	ENSMUSG00000061751	missense	L/P	2846	Kalrn	ENSMUST00000076810.11:c.8537T>C	ENSMUSP00000076088.5:p.Leu2846Pro	H-2-Kb	9	6	6	LTYVMPSGV	LTYVMLSGV	NetMHC	188	49.73	0.265	146	0.137	325.494	137.237	0.422	49.73	188	141.7	338.3	132.7730709	312.6871254	185.033345	441.8247089	M6_p20	0.885714286	0.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.164	146	0	0	NA	16qB3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.770192477	sgMsh2	cell line
chr17	21262216	21262216	A	T	ENSMUST00000236821.1	NA	ENSMUSG00000050102	missense	I/L	268	Vmn1r235	ENSMUST00000236821.1:c.802A>T	ENSMUSP00000158023.1:p.Ile268Leu	H-2-Kb	9	4	8	STFMLCYLI	STFMLCYII	NetMHC	193.55	530.74	2.742	368	0.098	380.177	659.855	1.736	530.74	193.55	586.7	292.5	733.0101696	467.8536263	736.6310144	477.8042407	M6_p20	2.571428571	2.571428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.105	368	0	0	NA	17qA3.2	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.493111037	sgMsh2	cell line
chr17	19812337	19812337	C	A	ENSMUST00000172203.1	5	ENSMUSG00000091771	missense	T/N	791	Vmn2r103	ENSMUST00000172203.1:c.2372C>A	ENSMUSP00000126756.1:p.Thr791Asn	H-2-Kb	9	7	5	CVWVNFLPV	CVWVTFLPV	NetMHC	225.74	335.96	1.488	383	0.209	373.645	454.543	1.217	335.96	225.74	1083.8	583.7	309.8203926	301.3769268	573.1258538	445.9128626	M6_p20	1.285714286	1.871428571	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.22	383	0	0	NA	17qA3.2	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr16	64926197	64926197	G	A	ENSMUST00000063076.5	1	ENSMUSG00000050783	missense	S/F	244	Htr1f	ENSMUST00000063076.5:c.731C>T	ENSMUSP00000063136.4:p.Ser244Phe	H-2-Kb	9	10	2	TFYMLEKSL	TSYMLEKSL	NetMHCpan	295.4	99.7	0.338	213	0.174	314.513	130.789	0.416	100.05	304.5	99.7	295.4	180.3474475	333.5108752	161.5288124	324.526376	M6_p20	-1.27E-16	-1.27E-16	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.181	213	0	0	NA	16qC1.3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.850029502	sgMsh2	cell line
chr16	58915901	58915901	GA	G	ENSMUST00000171656.2	2	ENSMUSG00000090629	FS	S/X	247	Olfr180	ENSMUST00000171656.2:c.739del	ENSMUSP00000128358.1:p.Ser247LeufsTer31	H-2-Kb	9	31	0	KTYQWLYFI	NA	NetMHCpan	171.2	NA	NA	176	0.097	384.332	NA	NA	NA	307.23	NA	171.2	NA	461.4344339	NA	521.4948213	M6_p20	0.585714286	0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.085	176	0	0	NA	16qC1.2	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.399185125	sgMsh2	cell line
chr17	19812337	19812337	C	A	ENSMUST00000172203.1	5	ENSMUSG00000091771	missense	T/N	791	Vmn2r103	ENSMUST00000172203.1:c.2372C>A	ENSMUSP00000126756.1:p.Thr791Asn	H-2-Kb	9	4	8	VFFCVWVNF	VFFCVWVTF	SMMPMBEC	208.089	249.029	1.197	383	0.209	303.189	414.473	1.367	540.47	364.77	2015	1419.2	288.4762076	241.607271	249.0290432	208.0894201	M6_p20	1.728571429	2.828571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.22	383	0	0	NA	17qA3.2	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr16	43982105	43982105	A	G	ENSMUST00000036174.9	1	ENSMUSG00000036292	missense	F/L	443	Gramd1c	ENSMUST00000036174.9:c.1327T>C	ENSMUSP00000036739.3:p.Phe443Leu	H-2-Kb	9	5	7	IMLQKTLDL	IMLQKTFDL	SMMPMBEC	261.367	256.596	0.982	177	0.158	403.129	347.19	0.861	400.54	478.08	556.5	644	293.8393807	328.178405	256.5960697	261.3665468	M6_p20	-0.028571429	0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.185	177	0	0	NA	16qB4	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.868814685	sgMsh2	cell line
chr16	58926453	58926453	T	C	ENSMUST00000205986.3	2	ENSMUSG00000090951	missense	I/M	39	Olfr181	ENSMUST00000205986.3:c.117A>G	ENSMUSP00000145877.2:p.Ile39Met	H-2-Kb	9	3	9	FSAIYLVTM	FSAIYLVTI	SMM	339.711	641.372	1.888	354	0.172	388.31	695.236	1.79	910.5	521.58	749.1	436.8	641.3720055	339.7113053	579.7623384	339.8208329	M6_p20	2.028571429	2.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.17	354	0	0	NA	16qC1.3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.798370251	sgMsh2	cell line
chr17	56632320	56632320	T	G	ENSMUST00000112979.3	1	ENSMUSG00000040828	missense	F/V	50	Catsperd	ENSMUST00000112979.3:c.148T>G	ENSMUSP00000108603.2:p.Phe50Val	H-2-Db	9	5	7	YAFPNTVVL	YAFPNTFVL	NetMHCpan	9.1	7.6	0.835	263	0.179	33.615	30.922	0.92	12.57	10.27	7.6	9.1	49.27424743	62.03260224	49.83907806	56.96000254	M6_p20	1.314285714	1.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.194	263	0	0	NA	17qD	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.911081345	sgMsh2	cell line
chr17	43450308	43450308	G	T	ENSMUST00000113599.1	5	ENSMUSG00000056492	missense	G/W	965	Adgrf5	ENSMUST00000113599.1:c.2893G>T	ENSMUSP00000109229.1:p.Gly965Trp	H-2-Db	9	4	8	FSLANNTWG	FSLANNTGG	SMMPMBEC	238.545	894.479	3.75	168	0.101	358.662	2507.529	6.991	9490.48	300.82	3154.6	501.4	1860.458556	416.5047897	894.4786932	238.5448253	M6_p20	-0.485714286	-0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.102	168	0	0	NA	17qB3	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.479022151	sgMsh2	cell line
chr17	37701005	37701005	AT	A	ENSMUST00000213732.1	5	ENSMUSG00000059964	FS	F/X	112	Olfr119	ENSMUST00000213732.1:c.339del	ENSMUSP00000150099.1:p.Phe113LeufsTer3	H-2-Kb	8	5	8	QMFFFTFL	QMFFFTFF	NetMHCpan	9.9	98.7	9.97	433	0.102	18.421	250.269	13.586	184.5	17.4	98.7	9.9	316.0385059	19.44195797	349.7357273	27.84453695	M6_p20	2.314285714	2.314285714	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.089	433	0	0	NA	17qB1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.417970308	sgMsh2	cell line
chr17	37382656	37382656	T	C	ENSMUST00000215518.1	5	ENSMUSG00000094884	missense	Y/H	30	Olfr105-ps	ENSMUST00000215518.1:c.88T>C	ENSMUSP00000154753.1:p.Tyr30His	H-2-Kb	8	8	4	LAMHFINV	LAMYFINV	NetMHCpan	38.2	31.6	0.827	663	0.077	115.449	106.2	0.92	39.92	67.69	31.6	38.2	226.3288934	224.7708563	172.480499	163.2074578	M6_p20	1.214285714	1.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.079	663	0	0	NA	17qB1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.371007352	sgMsh2	cell line
chr17	56777470	56777470	T	C	ENSMUST00000002444.14	1	ENSMUSG00000024206	missense	N/S	668	Rfx2	ENSMUST00000002444.14:c.2003A>G	ENSMUSP00000002444.7:p.Asn668Ser	H-2-Kb	8	6	6	VMGEFSDL	VMGEFNDL	NetMHC	113.49	324.64	2.861	153	0.105	192.202	326.647	1.699	324.64	113.49	576.2	261.7	313.8629122	193.9724271	328.6548155	190.4320313	M6_p20	0.042857143	0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.102	153	0	0	NA	17qD	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.479022151	sgMsh2	cell line
chr17	25299878	25299878	A	G	ENSMUST00000037453.3	1	ENSMUSG00000056399	missense	K/R	278	Prss34	ENSMUST00000037453.3:c.833A>G	ENSMUSP00000045672.2:p.Lys278Arg	H-2-Kb	8	7	5	VSWIRCYV	VSWIKCYV	NetMHCpan	83.8	156.6	1.869	115	0.209	200.65	344.633	1.718	284	140.84	156.6	83.8	470.6954498	307.4255792	405.2658414	260.4593785	M6_p20	0.528571429	0.528571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.237	115	0	0	NA	17qA3.3	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr17	24891473	24891473	T	A	ENSMUST00000168265.7	1	ENSMUSG00000024160	missense	Y/N	425	Spsb3	ENSMUST00000168265.7:c.1273T>A	ENSMUSP00000126878.1:p.Tyr425Asn	H-2-Kb	8	5	7	SSTSLQNL	SSTSLQYL	SMM	212.687	370.459	1.742	56	0.125	273.05	497.39	1.822	490.42	240.79	1191.4	724.7	370.458872	212.686537	504.3592613	305.3092764	M6_p20	-0.242857143	-0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.151	56	0	0	NA	17qA3.3	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.709140635	sgMsh2	cell line
chr17	40228805	40228805	A	G	ENSMUST00000026499.5	1	ENSMUSG00000025433	missense	V/A	167	Crisp3	ENSMUST00000026499.5:c.500T>C	ENSMUSP00000026499.5:p.Val167Ala	H-2-Kb	8	10	2	YACRYCPV	YVCRYCPV	SMMPMBEC	174.478	161.339	0.925	669	0.061	239.579	312.449	1.304	429.13	286.52	494.4	303	195.7672319	192.6371303	161.3392375	174.4777291	M6_p20	0.514285714	0.514285714	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.065	669	0	0	NA	17qB2	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.305259214	sgMsh2	cell line
chr17	37672151	37672151	G	A	ENSMUST00000216551.1	5	ENSMUSG00000080990	missense	V/I	43	Olfr118	ENSMUST00000216551.1:c.127G>A	ENSMUSP00000151212.1:p.Val43Ile	H-2-Kb	8	11	1	ISLTGNAL	VSLTGNAL	SMMPMBEC	167.009	171.293	1.026	890	0.136	244.445	226.992	0.929	282.69	306.61	583	591.8	170.8991883	182.2804114	171.2931516	167.0090478	M6_p20	0.571428571	0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.146	890	0	0	NA	17qB1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.685659157	sgMsh2	cell line
chr17	31946715	31946715	C	A	ENSMUST00000238192.1	NA	ENSMUSG00000002076	missense	S/I	302	Hsf2bp	ENSMUST00000238192.1:c.905G>T	ENSMUSP00000157466.1:p.Ser302Ile	H-2-Kb	8	11	1	ISLPLQRI	SSLPLQRI	NetMHCpan	342.3	795.3	2.323	19	0.158	429.765	936.272	2.179	1048.9	422.27	795.3	342.3	823.6448742	437.2602513	1051.332282	500.8872766	M6_p20	0.242857143	0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.188	19	0	0	NA	17qB1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.882903572	sgMsh2	cell line
chr17	37751964	37751964	A	G	ENSMUST00000174675.3	5	ENSMUSG00000060017	missense	I/V	37	Olfr121	ENSMUST00000174675.3:c.109A>G	ENSMUSP00000133865.3:p.Ile37Val	H-2-Kb	8	4	8	CFLLFTLV	CFLLFTLI	SMM	253.945	461.041	1.816	695	0.068	479.578	724.227	1.51	850.4	581.81	2002	2533.9	461.0414792	253.9451951	598.0534499	377.3462166	M6_p20	2.928571429	2.928571429	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;MuSe;Vardict	3	0.064	695	0	0	NA	17qB1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.300562918	sgMsh2	cell line
chr17	37701005	37701005	AT	A	ENSMUST00000213732.1	5	ENSMUSG00000059964	FS	F/X	112	Olfr119	ENSMUST00000213732.1:c.339del	ENSMUSP00000150099.1:p.Phe113LeufsTer3	H-2-Kb	9	4	9	TQMFFFTFL	TQMFFFTFF	NetMHCpan	14.3	117.3	8.203	433	0.102	93.963	252.605	2.688	250.38	40.61	117.3	14.3	271.7127388	161.1053638	254.8296748	147.3160278	M6_p20	2.314285714	2.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.089	433	0	0	NA	17qB1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.417970308	sgMsh2	cell line
chr17	37751964	37751964	A	G	ENSMUST00000174675.3	5	ENSMUSG00000060017	missense	I/V	37	Olfr121	ENSMUST00000174675.3:c.109A>G	ENSMUSP00000133865.3:p.Ile37Val	H-2-Kb	9	11	1	VLLMFLVSL	ILLMFLVSL	NetMHC	127.87	166.59	1.303	695	0.068	185.568	235.147	1.267	166.59	127.87	243.7	206.3	294.5167504	200.0368468	226.5948317	171.0999962	M6_p20	2.785714286	3.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.064	695	0	0	NA	17qB1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.300562918	sgMsh2	cell line
chr17	32774731	32774731	T	C	ENSMUST00000159086.9	1	ENSMUSG00000024298	missense	K/R	490	Zfp871	ENSMUST00000159086.9:c.1469A>G	ENSMUSP00000127178.1:p.Lys490Arg	H-2-Kb	9	7	5	SQFQRHKAL	SQFQKHKAL	NetMHC	137.22	270.99	1.975	200	0.055	206.635	341.188	1.651	270.99	137.22	269.6	151.3	460.3731641	307.6876041	411.386466	261.9690589	M6_p20	-0.957142857	-0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.057	200	0	0	NA	17qB1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.267688849	sgMsh2	cell line
chr17	37701005	37701005	AT	A	ENSMUST00000213732.1	5	ENSMUSG00000059964	FS	F/X	112	Olfr119	ENSMUST00000213732.1:c.339del	ENSMUSP00000150099.1:p.Phe113LeufsTer3	H-2-Kb	9	5	8	QMFFFTFLV	QMFFFTFFG	SMM	56.378	416.016	7.379	433	0.102	130.663	1702.349	13.029	3181.25	152.62	2823.6	205	416.0159675	56.37804345	581.0988286	108.7051201	M6_p20	2.642857143	2.642857143	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.089	433	0	0	NA	17qB1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.417970308	sgMsh2	cell line
chr17	37672151	37672151	G	A	ENSMUST00000216551.1	5	ENSMUSG00000080990	missense	V/I	43	Olfr118	ENSMUST00000216551.1:c.127G>A	ENSMUSP00000151212.1:p.Val43Ile	H-2-Kb	9	5	7	ILLMFLISL	ILLMFLVSL	NetMHC	178.03	166.59	0.936	890	0.136	269.327	235.147	0.873	166.59	178.03	243.7	345.5	294.5167504	288.4762076	226.5948317	250.1785091	M6_p20	2.828571429	3.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.146	890	0	0	NA	17qB1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.685659157	sgMsh2	cell line
chr17	37382656	37382656	T	C	ENSMUST00000215518.1	5	ENSMUSG00000094884	missense	Y/H	30	Olfr105-ps	ENSMUST00000215518.1:c.88T>C	ENSMUSP00000154753.1:p.Tyr30His	H-2-Kb	9	7	5	VLAMHFINV	VLAMYFINV	NetMHCpan	171.6	152.5	0.889	663	0.077	293.012	230.854	0.788	138.03	197.65	152.5	171.6	338.9299909	422.7756832	309.2074862	388.3738676	M6_p20	1.214285714	2.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.079	663	0	0	NA	17qB1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.371007352	sgMsh2	cell line
chr17	56632320	56632320	T	G	ENSMUST00000112979.3	1	ENSMUSG00000040828	missense	F/V	50	Catsperd	ENSMUST00000112979.3:c.148T>G	ENSMUSP00000108603.2:p.Phe50Val	H-2-Kb	9	3	9	LFYAFPNTV	LFYAFPNTF	NetMHCpan	233	338.6	1.453	263	0.179	281.738	333.442	1.184	338.69	258.61	338.6	233	228.6177783	304.8667072	328.2842143	424.864065	M6_p20	0.242857143	0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.194	263	0	0	NA	17qD	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.911081345	sgMsh2	cell line
chr17	25299878	25299878	A	G	ENSMUST00000037453.3	1	ENSMUSG00000056399	missense	K/R	278	Prss34	ENSMUST00000037453.3:c.833A>G	ENSMUSP00000045672.2:p.Lys278Arg	H-2-Kb	9	4	8	MSYVSWIRC	MSYVSWIKC	SMMPMBEC	410.44	619.798	1.51	115	0.209	483.38	914.881	1.893	1246.75	517.21	889.8	451.4	939.9613579	515.3591605	619.7977567	410.4403034	M6_p20	0.528571429	0.971428571	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.237	115	0	0	NA	17qA3.3	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr18	37680939	37680939	G	T	ENSMUST00000192931.1	1	ENSMUSG00000103037	missense	S/I	161	Pcdhgb1	ENSMUST00000192931.1:c.482G>T	ENSMUSP00000141348.1:p.Ser161Ile	H-2-Db	9	3	9	NSLKMYTVI	NSLKMYTVS	NetMHC	158.89	19903.22	125.264	245	0.576	356.594	9153.28	25.669	19903.22	158.89	14990.9	524.3	2996.539453	391.3992598	3315.660076	321.7881152	M6_p20	1.214285714	1.214285714	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.575	245	0	0	NA	18qB3	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	2	1	sgMsh2	cell line
chr18	37021442	37021442	T	C	ENSMUST00000047614.3	1	ENSMUSG00000103310	missense	Y/H	405	Pcdha12	ENSMUST00000047614.3:c.1213T>C	ENSMUSP00000047609.1:p.Tyr405His	H-2-Db	9	5	7	STFKNYHSL	STFKNYYSL	NetMHCpan	36.5	34.8	0.953	238	0.168	221.131	155.833	0.705	81.22	180.1	34.8	36.5	270.7821299	272.659102	230.4464382	262.162156	M6_p20	-0.871428571	-0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.171	238	0	0	NA	18qB2	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.803066546	sgMsh2	cell line
chr17	78934740	78934740	G	A	ENSMUST00000024885.9	1	ENSMUSG00000024081	missense	P/L	495	Cebpz	ENSMUST00000024885.9:c.1484C>T	ENSMUSP00000024885.8:p.Pro495Leu	H-2-Db	9	3	9	LTGVNRAYL	LTGVNRAYP	NetMHC	219.87	18677.21	84.947	150	0.133	301.794	8814.504	29.207	18677.21	219.87	13900.2	363.9	3661.170885	308.7592661	3728.807814	294.8288646	M6_p20	0.014285714	0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.132	150	0	0	NA	17qE3	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.619911018	sgMsh2	cell line
chr17	84697532	84697532	T	C	ENSMUST00000045714.14	1	ENSMUSG00000024254	missense	F/L	576	Abcg8	ENSMUST00000045714.14:c.1726T>C	ENSMUSP00000035246.8:p.Phe576Leu	H-2-Db	9	10	2	GLMINLDNL	GFMINLDNL	NetMHCpan	367.1	1384.4	3.771	92	0.065	482.343	875.659	1.815	1955.18	698.93	1384.4	367.1	313.0545354	536.5621085	366.91883	428.1244195	M6_p20	0.5	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.08	92	0	0	NA	17qE4	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.375703647	sgMsh2	cell line
chr17	78934740	78934740	G	A	ENSMUST00000024885.9	1	ENSMUSG00000024081	missense	P/L	495	Cebpz	ENSMUST00000024885.9:c.1484C>T	ENSMUSP00000024885.8:p.Pro495Leu	H-2-Kb	8	8	4	RAYLYSQI	RAYPYSQI	NetMHC	6.83	14.98	2.193	150	0.133	27.013	58.558	2.168	14.98	6.83	23.2	10.9	93.91608928	49.28786429	99.0238939	43.12608157	M6_p20	0.457142857	0.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.132	150	0	0	NA	17qE3	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.619911018	sgMsh2	cell line
chr17	84697532	84697532	T	C	ENSMUST00000045714.14	1	ENSMUSG00000024254	missense	F/L	576	Abcg8	ENSMUST00000045714.14:c.1726T>C	ENSMUSP00000035246.8:p.Phe576Leu	H-2-Kb	8	4	8	SFYLTAGL	SFYLTAGF	NetMHC	15.37	172.25	11.207	92	0.065	31.057	352.868	11.362	172.25	15.37	298.6	61	482.7696948	29.69887511	407.1364636	32.41455024	M6_p20	1.4	1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.08	92	0	0	NA	17qE4	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.375703647	sgMsh2	cell line
chr18	61697778	61697778	T	C	ENSMUST00000025472.6	1	ENSMUSG00000024579	missense	Y/C	341	Pcyox1l	ENSMUST00000025472.6:c.1022A>G	ENSMUSP00000025472.1:p.Tyr341Cys	H-2-Kb	8	5	7	VSLVHGCL	VSLVHGYL	NetMHC	42.26	7.17	0.17	91	0.066	48.333	15.42	0.319	7.17	42.26	15	81.6	15.83944645	48.27696948	17.44777291	48.38825938	M6_p20	1.414285714	1.471428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.1	91	0	0	NA	18qE1	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.469629559	sgMsh2	cell line
chr18	34425065	34425065	T	C	ENSMUST00000014647.8	1	ENSMUSG00000014503	missense	F/L	266	Pkd2l2	ENSMUST00000014647.8:c.796T>C	ENSMUSP00000014647.7:p.Phe266Leu	H-2-Kb	8	7	5	TSWQLYSV	TSWQFYSV	NetMHCpan	224.1	15.8	0.071	113	0.168	243.655	18.534	0.076	8.36	286.6	15.8	224.1	24.70244836	260.4593785	21.2686537	226.8506354	M6_p20	0.1	0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.185	113	0	0	NA	18qB1	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.868814685	sgMsh2	cell line
chr17	83477824	83477824	T	C	ENSMUST00000096766.11	1	ENSMUSG00000032624	missense	L/P	875	Eml4	ENSMUST00000096766.11:c.2624T>C	ENSMUSP00000094528.4:p.Leu875Pro	H-2-Kb	8	5	7	SIIQWKPV	SIIQWKLV	SMMPMBEC	267.141	735.766	2.754	205	0.088	337.819	1037.14	3.07	1227.56	355.94	1662.3	657.1	846.7203545	319.6980594	735.7664827	267.1406633	M6_p20	0.471428571	0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.089	205	0	0	NA	17qE4	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.417970308	sgMsh2	cell line
chr17	86168897	86168897	T	A	ENSMUST00000097275.8	1	ENSMUSG00000045038	missense	F/Y	102	Prkce	ENSMUST00000097275.8:c.305T>A	ENSMUSP00000094874.2:p.Phe102Tyr	H-2-Kb	8	7	5	CTIQYEEL	CTIQFEEL	NetMHCpan	215.2	148.3	0.689	71	0.085	326.052	254.206	0.78	274.13	397.36	148.3	215.2	234.2825811	287.5676312	296.9887511	364.5356443	M6_p20	-0.6	-0.6	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.093	71	0	0	NA	17qE4	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.43675549	sgMsh2	cell line
chr18	37941753	37941753	A	G	ENSMUST00000043498.8	1	ENSMUSG00000024454	missense	S/P	312	Hdac3	ENSMUST00000043498.8:c.934T>C	ENSMUSP00000037981.7:p.Ser312Pro	H-2-Kb	8	6	6	WTYETPLL	WTYETSLL	SMMPMBEC	359.534	238.638	0.664	340	0.088	430.684	272.762	0.633	289.23	493.46	348.5	494.9	256.2949211	367.908651	238.6382195	359.5340277	M6_p20	-0.028571429	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.1	340	0	0	NA	18qB3	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.469629559	sgMsh2	cell line
chr18	37021442	37021442	T	C	ENSMUST00000047614.3	1	ENSMUSG00000103310	missense	Y/H	405	Pcdha12	ENSMUST00000047614.3:c.1213T>C	ENSMUSP00000047609.1:p.Tyr405His	H-2-Kb	8	8	4	KNYHSLVL	KNYYSLVL	NetMHCpan	150	57	0.38	238	0.168	428.416	356.888	0.833	345.02	673.56	57	150	368.7567681	366.2182643	518.4895408	490.6140712	M6_p20	0.428571429	0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.171	238	0	0	NA	18qB2	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.803066546	sgMsh2	cell line
chr18	37473936	37473936	T	C	ENSMUST00000050034.2	NA	ENSMUSG00000047033	missense	F/L	74	Pcdhb15	ENSMUST00000050034.2:c.220T>C	ENSMUSP00000059598.1:p.Phe74Leu	H-2-Kb	8	10	2	RLLLLSPL	RFLLLSPL	SMMPMBEC	429.279	192.637	0.449	60	0.133	459.126	249.124	0.543	305.61	971.72	348.4	437.7	163.5836898	480.5515695	192.6371303	429.2793522	M6_p20	2.371428571	2.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.131	60	0	0	NA	18qB3	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.615214723	sgMsh2	cell line
chr18	37021442	37021442	T	C	ENSMUST00000047614.3	1	ENSMUSG00000103310	missense	Y/H	405	Pcdha12	ENSMUST00000047614.3:c.1213T>C	ENSMUSP00000047609.1:p.Tyr405His	H-2-Kb	8	6	6	TFKNYHSL	TFKNYYSL	SMM	267.756	194.42	0.726	238	0.168	366.723	239.62	0.653	359	1171.72	262.6	447.2	194.4195797	267.7564861	216.6406749	286.246378	M6_p20	-0.871428571	-0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.171	238	0	0	NA	18qB2	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.803066546	sgMsh2	cell line
chr18	37021442	37021442	T	C	ENSMUST00000047614.3	1	ENSMUSG00000103310	missense	Y/H	405	Pcdha12	ENSMUST00000047614.3:c.1213T>C	ENSMUSP00000047609.1:p.Tyr405His	H-2-Kb	9	5	7	STFKNYHSL	STFKNYYSL	NetMHCpan	15.4	13.9	0.903	238	0.168	61.313	45.651	0.745	16.12	22.6	13.9	15.4	75.18132925	100.0253316	87.34740358	104.5321782	M6_p20	-0.871428571	-0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.171	238	0	0	NA	18qB2	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.803066546	sgMsh2	cell line
chr17	84697532	84697532	T	C	ENSMUST00000045714.14	1	ENSMUSG00000024254	missense	F/L	576	Abcg8	ENSMUST00000045714.14:c.1726T>C	ENSMUSP00000035246.8:p.Phe576Leu	H-2-Kb	9	3	9	NSFYLTAGL	NSFYLTAGF	NetMHC	85.47	432.59	5.061	92	0.065	225.767	521.843	2.311	432.59	85.47	325	89.2	611.0967866	362.3347605	709.9863514	410.4403034	M6_p20	1.4	1.4	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.08	92	0	0	NA	17qE4	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.375703647	sgMsh2	cell line
chr18	37302556	37302556	A	G	ENSMUST00000051754.1	NA	ENSMUSG00000045498	missense	Q/R	525	Pcdhb3	ENSMUST00000051754.1:c.1574A>G	ENSMUSP00000059180.1:p.Gln525Arg	H-2-Kb	9	11	1	RAFEFHVGA	QAFEFHVGA	NetMHCpan	110.2	284.7	2.583	154	0.143	481.759	390.709	0.811	172.28	176.02	284.7	110.2	496.7181164	857.254947	579.7623384	787.4989801	M6_p20	0.642857143	0.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.157	154	0	0	NA	18qB3	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.737318408	sgMsh2	cell line
chr18	34425065	34425065	T	C	ENSMUST00000014647.8	1	ENSMUSG00000014503	missense	F/L	266	Pkd2l2	ENSMUST00000014647.8:c.796T>C	ENSMUSP00000014647.7:p.Phe266Leu	H-2-Kb	9	8	4	SWQLYSVKL	SWQFYSVKL	NetMHC	179.84	220.95	1.229	113	0.168	295.887	262.711	0.888	220.95	179.84	256.2	341.1	269.2216614	250.6744092	353.3865369	371.7491635	M6_p20	0.328571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.185	113	0	0	NA	18qB1	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.868814685	sgMsh2	cell line
chr17	84697532	84697532	T	C	ENSMUST00000045714.14	1	ENSMUSG00000024254	missense	F/L	576	Abcg8	ENSMUST00000045714.14:c.1726T>C	ENSMUSP00000035246.8:p.Phe576Leu	H-2-Kb	9	4	8	SFYLTAGLM	SFYLTAGFM	NetMHC	185.37	344.02	1.856	92	0.065	368.163	542.485	1.473	344.02	185.37	582.5	462.1	502.4698412	274.2268658	867.4610828	521.4948213	M6_p20	1.271428571	1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.08	92	0	0	NA	17qE4	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.375703647	sgMsh2	cell line
chr18	37680939	37680939	G	T	ENSMUST00000192931.1	1	ENSMUSG00000103037	missense	S/I	161	Pcdhgb1	ENSMUST00000192931.1:c.482G>T	ENSMUSP00000141348.1:p.Ser161Ile	H-2-Kb	9	10	2	VIPNPHFSL	VSPNPHFSL	NetMHC	211.65	119.37	0.564	245	0.576	410.119	267.215	0.652	119.37	211.65	107.8	235.3	415.0591573	584.9382211	522.696991	774.9077422	M6_p20	-0.585714286	0.228571429	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.575	245	0	0	NA	18qB3	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	2	1	sgMsh2	cell line
chr18	63106236	63106236	A	G	ENSMUST00000047480.12	1	ENSMUSG00000041482	missense	Y/H	758	Piezo2	ENSMUST00000047480.12:c.2272T>C	ENSMUSP00000040019.5:p.Tyr758His	H-2-Kb	9	11	1	HQFENFPGL	YQFENFPGL	NetMHC	224.35	73.89	0.329	68	0.25	340.194	176.67	0.519	73.89	224.35	81	253.7	272.3391013	426.6875784	329.7995054	557.5065832	M6_p20	0.057142857	0.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.256	68	0	0	NA	18qE1	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr18	63106236	63106236	A	G	ENSMUST00000047480.12	1	ENSMUSG00000041482	missense	Y/H	758	Piezo2	ENSMUST00000047480.12:c.2272T>C	ENSMUSP00000040019.5:p.Tyr758His	H-2-Kb	9	5	7	LIFIYTHQF	LIFIYTYQF	NetMHCpan	147.6	417.1	2.826	68	0.25	209.18	182.911	0.874	177.41	232.9	417.1	147.6	188.4126249	250.6744092	154.9708446	185.4598909	M6_p20	0.2	1.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.256	68	0	0	NA	18qE1	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr18	25340381	25340381	A	G	ENSMUST00000097643.9	5	ENSMUSG00000033632	missense	N/S	414	AW554918	ENSMUST00000097643.9:c.1241A>G	ENSMUSP00000095248.3:p.Asn414Ser	H-2-Kb	9	10	2	YSWLRTQAM	YNWLRTQAM	NetMHCpan	246.9	389.9	1.579	71	0.141	285.227	354.619	1.243	397.05	289.33	389.9	246.9	301.3769268	283.2109234	319.3375581	287.2433612	M6_p20	-0.3	-0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.162	71	0	0	NA	18qA2	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.760799886	sgMsh2	cell line
chr18	37941753	37941753	A	G	ENSMUST00000043498.8	1	ENSMUSG00000024454	missense	S/P	312	Hdac3	ENSMUST00000043498.8:c.934T>C	ENSMUSP00000037981.7:p.Ser312Pro	H-2-Kb	9	4	8	RCWTYETPL	RCWTYETSL	SMMPMBEC	408.555	698.634	1.71	340	0.088	457.95	789.442	1.724	880.25	477.4	638	438.5	1244.829868	714.6773197	698.6344547	408.5545015	M6_p20	-0.7	-0.7	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.1	340	0	0	NA	18qB3	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.469629559	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Db	9	5	9	SNVVNHFFV	SNVVNHFFC	NetMHC	33.28	4264.52	128.141	254	0.071	169.809	3110.826	18.32	4264.52	33.28	4326.5	48.8	1957.131469	290.8171406	1310.901318	321.7881152	M6_p20	1.642857143	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.063	254	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.295866622	sgMsh2	cell line
chr19	5770781	5770781	GA	G	ENSMUST00000236978.1	NA	ENSMUSG00000024941	FS	F/X	65	Scyl1	ENSMUST00000236978.1:c.194del	ENSMUSP00000157476.1:p.Phe65SerfsTer28	H-2-Db	9	8	4	KAASNASKL	NA	NetMHC	168.17	NA	NA	105	0.048	326.882	NA	NA	NA	168.17	NA	236.3	NA	417.4649324	NA	585.5581095	M6_p20	-0.228571429	-0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.084	105	0	0	NA	19qA	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	sgMsh2	cell line
chr19	25171612	25171612	A	G	ENSMUST00000025831.7	1	ENSMUSG00000052085	missense	T/A	1485	Dock8	ENSMUST00000025831.7:c.4453A>G	ENSMUSP00000025831.6:p.Thr1485Ala	H-2-Kb	8	5	7	LTHCFAAL	LTHCFATL	NetMHC	13.46	20.98	1.559	121	0.058	24.126	31.465	1.304	20.98	13.46	18.6	21.6	49.28786429	29.63056959	41.95077612	26.65262568	M6_p20	1.257142857	1.257142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.078	121	0	0	NA	19qB	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.366311056	sgMsh2	cell line
chr19	13502426	13502426	A	G	ENSMUST00000217001.1	2	ENSMUSG00000071629	missense	I/V	28	Olfr1477	ENSMUST00000217001.1:c.82A>G	ENSMUSP00000149565.1:p.Ile28Val	H-2-Kb	8	11	1	VIFTLIYL	IIFTLIYL	SMM	15.267	16.283	1.067	706	0.037	17.014	18.256	1.073	19.54	16.62	27.2	23.8	16.2832091	15.26651821	16.97227266	17.40764414	M6_p20	2.485714286	2.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.041	706	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.192548119	sgMsh2	cell line
chr19	25409764	25409764	T	C	ENSMUST00000049400.14	5	ENSMUSG00000032702	missense	V/A	239	Kank1	ENSMUST00000049400.14:c.716T>C	ENSMUSP00000042177.8:p.Val239Ala	H-2-Kb	8	9	3	SSARHSPL	SSVRHSPL	NetMHC	29.15	10.11	0.347	183	0.148	49.084	28.486	0.58	10.11	29.15	53.9	118.6	27.27344509	40.52658414	29.69887511	57.64212727	M6_p20	-0.757142857	-0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.14	183	0	0	NA	19qB	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.657481383	sgMsh2	cell line
chr19	8161659	8161659	A	G	ENSMUST00000113298.8	1	ENSMUSG00000075044	missense	F/L	480	Slc22a29	ENSMUST00000113298.8:c.1438T>C	ENSMUSP00000108923.2:p.Phe480Leu	H-2-Kb	8	8	4	SGLLLSPL	SGLFLSPL	NetMHC	34.25	53.46	1.561	253	0.099	89.462	82.283	0.92	53.46	34.25	38.3	79.9	111.1066364	99.0238939	126.9813676	105.6185011	M6_p20	1.771428571	1.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.096	253	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.450844377	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	8	13	1	VTFPHYWL	NA	NetMHCpan	13.9	NA	NA	254	0.071	31.617	NA	NA	NA	50.29	NA	13.9	NA	24.5323979	NA	38.70258739	M6_p20	-0.157142857	-0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.063	254	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.295866622	sgMsh2	cell line
chr18	87756730	87756730	C	G	ENSMUST00000091776.6	NA	ENSMUSG00000069324	missense	P/A	126	Gm5096	ENSMUST00000091776.6:c.376C>G	ENSMUSP00000135956.1:p.Pro126Ala	H-2-Kb	8	7	5	VSQTASYL	VSQTPSYL	SMM	109.582	165.859	1.514	391	0.156	131.957	250.56	1.899	264.67	114.38	836.3	352.8	165.8593656	109.5821962	236.4503711	149.534017	M6_p20	-0.214285714	-0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.161	391	0	0	NA	18qE4	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.756103591	sgMsh2	cell line
chr19	34039172	34039172	A	G	ENSMUST00000054260.7	1	ENSMUSG00000024771	missense	S/G	267	Lipk	ENSMUST00000054260.7:c.799A>G	ENSMUSP00000053913.6:p.Ser267Gly	H-2-Kb	8	4	8	SNFLFSLG	SNFLFSLS	SMM	51.492	48.949	0.951	200	0.13	115.861	82.255	0.71	98.25	207.49	82.9	150.3	48.94856902	51.49202839	81.60936526	81.42166892	M6_p20	1.214285714	1.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.139	200	0	0	NA	19qC1	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.652785087	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	8	8	6	VNHFFVTF	VNHFFCDI	NetMHCpan	52.1	72.4	1.39	254	0.071	262.687	291.68	1.11	265.13	217.24	72.4	52.1	318.2291802	353.7854762	330.1718172	308.1342684	M6_p20	0.742857143	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.063	254	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.295866622	sgMsh2	cell line
chr19	5655062	5655062	A	G	ENSMUST00000071857.12	1	ENSMUSG00000056917	missense	F/L	502	Sipa1	ENSMUST00000071857.12:c.1504T>C	ENSMUSP00000073618.5:p.Phe502Leu	H-2-Kb	8	4	8	ANADFRAL	ANADFRAF	SMM	145.794	2369.954	16.255	48	0.208	201.668	2632.782	13.055	4044.23	265.27	1742.8	172.8	2369.954455	145.794117	2895.609548	230.5366617	M6_p20	-0.185714286	-0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.181	48	0	0	NA	19qA	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	sgMsh2	cell line
chr19	10054643	10054643	A	G	ENSMUST00000115995.3	1	ENSMUSG00000024664	missense	H/R	266	Fads3	ENSMUST00000115995.3:c.797A>G	ENSMUSP00000111659.2:p.His266Arg	H-2-Kb	8	11	1	RQHLYFFL	HQHLYFFL	SMMPMBEC	135.75	290.228	2.138	310	0.048	153.427	437.353	2.851	1305.83	369.59	505.1	167.3	369.6068402	139.5532644	290.2284617	135.7500506	M6_p20	0.742857143	0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.05	310	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.23481478	sgMsh2	cell line
chr19	25158466	25158466	A	G	ENSMUST00000025831.7	1	ENSMUSG00000052085	missense	Y/C	1216	Dock8	ENSMUST00000025831.7:c.3647A>G	ENSMUSP00000025831.6:p.Tyr1216Cys	H-2-Kb	8	7	5	IAALCLPL	IAALYLPL	NetMHCpan	307.8	11.6	0.038	168	0.137	324.653	23.093	0.071	18.02	559.33	11.6	307.8	28.16696149	315.3116375	34.17747702	333.9950266	M6_p20	2.271428571	2.371428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.137	168	0	0	NA	19qB	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.643392496	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	8	17	0	HYWLFLAL	NA	SMMPMBEC	198.948	NA	NA	254	0.071	324.952	NA	NA	NA	632.06	NA	372.1	NA	277.8049629	NA	198.9481935	M6_p20	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.063	254	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.295866622	sgMsh2	cell line
chr19	16383254	16383254	G	A	ENSMUST00000025541.5	1	ENSMUSG00000024639	missense	V/M	314	Gnaq	ENSMUST00000025541.5:c.940G>A	ENSMUSP00000025541.5:p.Val314Met	H-2-Kb	8	6	6	ILKMFMDL	ILKMFVDL	NetMHCpan	249.7	319.7	1.28	276	0.127	388.374	474.546	1.222	1460.9	633.96	319.7	249.7	595.3056439	459.9811133	353.7854762	316.7670499	M6_p20	0.971428571	1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.138	276	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.648088792	sgMsh2	cell line
chr19	5751857	5751857	AG	A	ENSMUST00000081496.5	5	ENSMUSG00000024940	FS	Q/X	734	Ltbp3	ENSMUST00000081496.5:c.2207del	ENSMUSP00000080214.5:p.Gly736AlafsTer46	H-2-Kb	8	34	0	RTFRVLTV	NA	NetMHCpan	354.1	NA	NA	34	0.147	465.42	NA	NA	NA	1425.62	NA	354.1	NA	432.2549746	NA	498.5859086	M6_p20	1.3	1.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.164	34	0	0	NA	19qA	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	sgMsh2	cell line
chr19	5655062	5655062	A	G	ENSMUST00000071857.12	1	ENSMUSG00000056917	missense	F/L	502	Sipa1	ENSMUST00000071857.12:c.1504T>C	ENSMUSP00000073618.5:p.Phe502Leu	H-2-Kb	9	4	8	ANADFRALL	ANADFRAFL	NetMHC	68.93	102.13	1.482	48	0.208	144.716	251.549	1.738	102.13	68.93	70.4	70.6	400.9682638	218.831582	458.4056903	275.5814621	M6_p20	0.857142857	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.181	48	0	0	NA	19qA	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	sgMsh2	cell line
chr19	5026119	5026119	A	G	ENSMUST00000236152.1	NA	ENSMUSG00000024891	missense	N/S	68	Slc29a2	ENSMUST00000236152.1:c.203A>G	ENSMUSP00000157780.1:p.Asn68Ser	H-2-Kb	9	7	5	FNFNSWVTL	FNFNNWVTL	NetMHCpan	92.5	81.4	0.88	201	0.129	139.525	113.18	0.811	76.92	107.16	81.4	92.5	172.6275075	200.4979793	144.9606074	171.8897579	M6_p20	0.7	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.127	201	0	0	NA	19qA	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	9	13	1	VTFPHYWLF	NA	NetMHCpan	32	NA	NA	254	0.071	35.13	NA	NA	NA	109.74	NA	32	NA	35.08407252	NA	35.17628732	M6_p20	0.342857143	0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.063	254	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.295866622	sgMsh2	cell line
chr19	13445599	13445599	A	G	ENSMUST00000217249.1	5	ENSMUSG00000096320	missense	T/A	196	Olfr1471	ENSMUST00000217249.1:c.586A>G	ENSMUSP00000150749.1:p.Thr196Ala	H-2-Kb	9	10	2	IALLVLATL	ITLLVLATL	NetMHC	124.05	139.69	1.126	1191	0.107	228.715	283.656	1.24	139.69	124.05	144.4	129.9	462.4981501	335.8226621	422.9119919	327.5291816	M6_p20	2.928571429	3.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.111	1191	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.521288811	sgMsh2	cell line
chr19	13453837	13453837	G	A	ENSMUST00000096201.3	5	ENSMUSG00000095189	missense	R/C	227	Olfr1472	ENSMUST00000096201.3:c.679C>T	ENSMUSP00000093915.3:p.Arg227Cys	H-2-Kb	9	5	7	IAILRMCSV	IAILRMRSV	NetMHCpan	154	207.9	1.35	697	0.075	210.333	264.356	1.257	135.27	172.21	207.9	154	370.7746213	299.3022626	320.8115533	248.4562923	M6_p20	1.657142857	2.071428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;MuSe;Vardict	3	0.071	697	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.333436987	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	9	7	7	VVNHFFVTF	VVNHFFCDI	SMM	104.018	301.377	2.897	254	0.071	110.553	279.147	2.525	290.84	180.67	126.9	112.4	301.3769268	104.0183595	267.4545558	108.7051201	M6_p20	0.742857143	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.063	254	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.295866622	sgMsh2	cell line
chr19	20804657	20804657	T	C	ENSMUST00000039500.3	1	ENSMUSG00000024749	missense	T/A	566	Tmc1	ENSMUST00000039500.3:c.1696A>G	ENSMUSP00000040859.3:p.Thr566Ala	H-2-Kb	9	5	7	YGYPSYAEF	YGYPSYTEF	NetMHCpan	53	104.8	1.977	809	0.129	218.192	346.66	1.589	479.59	191.98	104.8	53	326.6705622	244.4049514	366.6485738	269.3084622	M6_p20	-0.557142857	-0.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.127	809	0	0	NA	19qB	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.59642954	sgMsh2	cell line
chr19	5026119	5026119	A	G	ENSMUST00000236152.1	NA	ENSMUSG00000024891	missense	N/S	68	Slc29a2	ENSMUST00000236152.1:c.203A>G	ENSMUSP00000157780.1:p.Asn68Ser	H-2-Kb	9	11	1	SWVTLLSQL	NWVTLLSQL	NetMHC	203.93	1456.57	7.142	201	0.129	278.863	1336.728	4.793	1456.57	203.93	1841.7	356.6	1096.755952	254.1616376	1216.886295	303.5638135	M6_p20	1.514285714	1.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.127	201	0	0	NA	19qA	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	sgMsh2	cell line
chr18	75230060	75230060	A	G	ENSMUST00000039608.8	1	ENSMUSG00000035765	missense	N/S	545	Dym	ENSMUST00000039608.8:c.1634A>G	ENSMUSP00000047054.7:p.Asn545Ser	H-2-Kb	9	11	1	SSLHHNPNL	NSLHHNPNL	NetMHCpan	126.1	1041.7	8.261	214	0.107	216.613	1010.719	4.666	2904.31	228.11	1041.7	126.1	979.7381063	227.0439846	826.5135921	206.1816449	M6_p20	-1.057142857	-1.057142857	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.116	214	0	0	NA	18qE3	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.544770289	sgMsh2	cell line
chr19	13705333	13705333	A	G	ENSMUST00000216366.1	5	ENSMUSG00000051156	missense	T/A	169	Olfr1491	ENSMUST00000216366.1:c.505A>G	ENSMUSP00000149071.1:p.Thr169Ala	H-2-Kb	9	6	6	TALIFALPF	TALIFTLPF	NetMHC	239.87	221.04	0.921	523	0.054	260.671	213.815	0.82	221.04	239.87	225.8	251.5	206.5903351	269.8422814	205.7074402	286.5827198	M6_p20	2.557142857	2.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.059	523	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.27708144	sgMsh2	cell line
chr18	77361795	77361795	A	G	ENSMUST00000096547.10	1	ENSMUSG00000032818	missense	K/E	682	Loxhd1	ENSMUST00000096547.10:c.2044A>G	ENSMUSP00000094294.3:p.Lys682Glu	H-2-Kb	9	11	1	ENFRYHISV	KNFRYHISV	NetMHCpan	106.9	11.7	0.109	152	0.079	356.364	116.659	0.327	27.61	245.8	11.7	106.9	222.3873092	604.1016195	205.7074402	466.9280884	M6_p20	0.242857143	0.242857143	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2	2	0.08	152	0	0	NA	18qE3	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.375703647	sgMsh2	cell line
chr19	7025374	7025374	AG	A	ENSMUST00000025918.8	1	ENSMUSG00000024966	FS	L/X	396	Stip1	ENSMUST00000025918.8:c.1186del	ENSMUSP00000025918.7:p.Leu396CysfsTer28	H-2-Kb	9	23	0	WSFSWHSRT	NA	NetMHC	256.34	NA	NA	114	0.079	302.987	NA	NA	NA	256.34	NA	591.5	NA	320.7081525	NA	285.2659918	M6_p20	-1.157142857	-0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.098	114	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.460236968	sgMsh2	cell line
chr19	16383254	16383254	G	A	ENSMUST00000025541.5	1	ENSMUSG00000024639	missense	V/M	314	Gnaq	ENSMUST00000025541.5:c.940G>A	ENSMUSP00000025541.5:p.Val314Met	H-2-Kb	9	5	7	FILKMFMDL	FILKMFVDL	NetMHC	268.8	623.27	2.319	276	0.127	358.268	502.216	1.402	623.27	268.8	645.4	411.6	381.1623536	362.3347605	317.8703353	354.201177	M6_p20	0.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.138	276	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.648088792	sgMsh2	cell line
chr19	23350619	23350619	T	C	ENSMUST00000036069.7	1	ENSMUSG00000033207	missense	K/E	462	Mamdc2	ENSMUST00000036069.7:c.1384A>G	ENSMUSP00000045432.6:p.Lys462Glu	H-2-Kb	9	8	4	ISFEKPMPT	ISFKKPMPT	SMMPMBEC	350.954	347.736	0.991	286	0.108	411.952	407.077	0.988	422.41	431.16	402.9	464.7	411.2538721	392.7443988	347.7362769	350.9538411	M6_p20	-0.942857143	-0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.109	286	0	0	NA	19qB	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.51189622	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	9	17	0	HYWLFLALV	NA	SMM	304.166	NA	NA	254	0.071	437.286	NA	NA	NA	459.38	NA	1465.1	NA	304.1655332	NA	415.1929781	M6_p20	2.757142857	2.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.063	254	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.295866622	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	9	14	0	TFPHYWLFL	NA	NetMHCpan	353	NA	NA	254	0.071	400.076	NA	NA	NA	462.8	NA	353	NA	426.6875784	NA	373.4650797	M6_p20	0.485714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.063	254	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.295866622	sgMsh2	cell line
chr19	34039172	34039172	A	G	ENSMUST00000054260.7	1	ENSMUSG00000024771	missense	S/G	267	Lipk	ENSMUST00000054260.7:c.799A>G	ENSMUSP00000053913.6:p.Ser267Gly	H-2-Kb	9	4	8	SNFLFSLGG	SNFLFSLSG	SMM	263.7	295.876	1.122	200	0.13	383.954	383.395	0.999	645.93	475	380.2	387.5	295.876178	263.6999212	386.5894518	380.4083139	M6_p20	1.657142857	1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.139	200	0	0	NA	19qC1	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.652785087	sgMsh2	cell line
chr19	23708921	23708921	C	T	ENSMUST00000237333.1	NA	ENSMUSG00000074925	missense	S/F	199	Ptar1	ENSMUST00000237333.1:c.596C>T	ENSMUSP00000157782.1:p.Ser199Phe	H-2-Kb	9	9	3	AWFHRIWVL	AWSHRIWVL	SMMPMBEC	169.141	1466.392	8.67	117	0.128	268.674	2576.438	9.589	6934.24	803.61	3426.6	352.8	1726.275075	184.5482792	1466.391721	169.1414308	M6_p20	0.957142857	0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.154	117	0	0	NA	19qB	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.723229521	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	9	16	0	PHYWLFLAL	NA	SMM	166.001	NA	NA	254	0.071	366.318	NA	NA	NA	971.99	NA	541.1	NA	166.0007308	NA	191.5358177	M6_p20	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.063	254	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.295866622	sgMsh2	cell line
chr2	24953277	24953277	T	C	ENSMUST00000028350.8	1	ENSMUSG00000026974	missense	V/A	87	Zmynd19	ENSMUST00000028350.8:c.260T>C	ENSMUSP00000028350.3:p.Val87Ala	H-2-Db	9	10	2	VAHLNAVTV	VVHLNAVTV	NetMHC	8.32	172.04	20.678	144	0.076	28.28	261.657	9.252	172.04	8.32	293.9	20.7	229.4140437	35.86080216	327.0167515	51.23538453	M6_p20	0.942857143	1.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.096	144	0	0	NA	2qA3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.450844377	sgMsh2	cell line
chr2	10126177	10126177	T	G	ENSMUST00000042290.13	1	ENSMUSG00000037254	missense	K/N	116	Itih2	ENSMUST00000042290.13:c.348A>C	ENSMUSP00000046530.7:p.Lys116Asn	H-2-Db	9	7	5	VQIPNGAFI	VQIPKGAFI	NetMHC	15.68	3324.83	212.043	151	0.152	65.122	3234.913	49.675	3324.83	15.68	2541.1	33.5	3144.995295	96.74310008	3833.275205	114.1747318	M6_p20	1.157142857	1.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.171	151	0	0	NA	2qA1	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.803066546	sgMsh2	cell line
chr19	39638726	39638726	G	T	ENSMUST00000067328.6	1	ENSMUSG00000062624	missense	P/H	220	Cyp2c67	ENSMUST00000067328.6:c.659C>A	ENSMUSP00000065796.6:p.Pro220His	H-2-Db	9	4	8	CQIFNAVHI	CQIFNAVPI	NetMHC	62.56	9.62	0.154	77	0.091	143.043	29.107	0.203	9.62	62.56	14.7	70.5	43.51309752	215.5857247	45.76884996	230.9776721	M6_p20	1.585714286	1.585714286	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.111	77	0	0	NA	19qC3	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.521288811	sgMsh2	cell line
chr19	47129189	47129189	GA	G	ENSMUST00000072141.3	1	ENSMUSG00000025047	FS	E/X	1659	Pdcd11	ENSMUST00000072141.3:c.4979del	ENSMUSP00000072008.2:p.Asn1660ThrfsTer9	H-2-Db	9	5	8	VALLNLETC	VALLNLENM	SMMPMBEC	54.647	20.633	0.378	158	0.063	159.116	15.88	0.1	10.3	226.9	11.5	489.4	20.25909309	91.33137583	20.63336211	54.64746241	M6_p20	0.885714286	1.485714286	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.069	158	0	0	NA	19qC3	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.324044396	sgMsh2	cell line
chr19	41232352	41232352	CA	C	ENSMUST00000237871.1	NA	ENSMUSG00000025016	FS	F/X	390	Tm9sf3	ENSMUST00000237871.1:c.1170del	ENSMUSP00000158318.1:p.Phe390LeufsTer18	H-2-Db	9	19	0	ASVSLLSFL	NA	NetMHC	310.91	NA	NA	238	0.105	402.645	NA	NA	NA	310.91	NA	997.3	NA	371.2102845	NA	434.0802235	M6_p20	2.4	2.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.094	238	0	0	NA	19qC3	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.441451786	sgMsh2	cell line
chr2	24687761	24687761	A	G	ENSMUST00000041342.11	1	ENSMUSG00000004113	missense	L/P	700	Cacna1b	ENSMUST00000041342.11:c.2099T>C	ENSMUSP00000037416.5:p.Leu700Pro	H-2-Db	9	4	8	TLFGNYTPL	TLFGNYTLL	NetMHCpan	113.2	549.8	4.857	165	0.097	218.505	712.435	3.26	2806.17	647.6	549.8	113.2	840.6592577	260.9876759	584.2113633	176.0232357	M6_p20	-0.128571429	-1.27E-16	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.112	165	0	0	NA	2qA3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.525985106	sgMsh2	cell line
chr2	22577871	22577871	T	C	ENSMUST00000044749.13	5	ENSMUSG00000025716	missense	V/A	1317	Myo3a	ENSMUST00000044749.13:c.3950T>C	ENSMUSP00000046329.7:p.Val1317Ala	H-2-Db	9	10	2	SAVTQNAPL	SVVTQNAPL	SMMPMBEC	357.742	2283.337	6.383	177	0.096	496.921	3714.743	7.476	9108.98	745.43	4105.8	474.3	3323.686094	519.5412082	2283.336925	357.7420571	M6_p20	0.071428571	0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.097	177	0	0	NA	2qA3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.455540673	sgMsh2	cell line
chr19	47733582	47733582	A	G	ENSMUST00000099353.5	1	ENSMUSG00000025066	missense	S/G	146	Sfr1	ENSMUST00000099353.5:c.436A>G	ENSMUSP00000096954.4:p.Ser146Gly	H-2-Kb	8	5	7	SSHSFCGV	SSHSFCSV	NetMHC	18.13	24.06	1.327	373	0.123	65.319	62.76	0.961	24.06	18.13	46.5	54.3	79.02054124	76.33786332	79.75170931	76.69022289	M6_p20	0.614285714	0.614285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.122	373	0	0	NA	19qD1	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.572948062	sgMsh2	cell line
chr19	44153684	44153684	A	G	ENSMUST00000042026.4	1	ENSMUSG00000037578	missense	V/A	545	Pkd2l1	ENSMUST00000042026.4:c.1634T>C	ENSMUSP00000045675.4:p.Val545Ala	H-2-Kb	8	8	4	VTYAFFVF	VTYVFFVF	NetMHC	23.26	20.43	0.878	236	0.093	26.478	27.127	1.024	20.43	23.26	46.7	23.8	29.49442949	30.74255792	24.75939338	29.15680954	M6_p20	1.771428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.1	236	0	0	NA	19qC3	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.469629559	sgMsh2	cell line
chr19	44973627	44973627	T	C	ENSMUST00000096053.4	1	ENSMUSG00000036097	missense	I/T	1081	Slf2	ENSMUST00000096053.4:c.3242T>C	ENSMUSP00000093758.3:p.Ile1081Thr	H-2-Kb	8	8	4	LTYTLLHL	LTYILLHL	NetMHCpan	21.4	34.2	1.598	707	0.05	46.318	52.591	1.135	36.2	30.3	34.2	21.4	74.08665723	69.6209588	68.98267002	62.33615346	M6_p20	0.785714286	0.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.055	707	0	0	NA	19qC3	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.258296258	sgMsh2	cell line
chr19	44153684	44153684	A	G	ENSMUST00000042026.4	1	ENSMUSG00000037578	missense	V/A	545	Pkd2l1	ENSMUST00000042026.4:c.1634T>C	ENSMUSP00000045675.4:p.Val545Ala	H-2-Kb	8	11	1	AFFVFFVL	VFFVFFVL	SMM	12.964	3.441	0.265	236	0.093	32.287	10.863	0.336	17.71	50.81	79.7	179.2	3.441438398	12.96402918	4.015503419	13.76385219	M6_p20	3.342857143	3.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.1	236	0	0	NA	19qC3	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.469629559	sgMsh2	cell line
chr2	27018384	27018384	T	C	ENSMUST00000114007.7	1	ENSMUSG00000015488	missense	V/A	110	Cacfd1	ENSMUST00000114007.7:c.329T>C	ENSMUSP00000109640.1:p.Val110Ala	H-2-Kb	8	10	2	IAPIVMSL	IVPIVMSL	NetMHC	149.05	202.13	1.356	128	0.117	267.587	302.714	1.131	202.13	149.05	258.1	193.4	347.3281635	341.7747702	438.2682402	473.9581548	M6_p20	1.971428571	2.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.139	128	0	0	NA	2qA3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.652785087	sgMsh2	cell line
chr19	44973627	44973627	T	C	ENSMUST00000096053.4	1	ENSMUSG00000036097	missense	I/T	1081	Slf2	ENSMUST00000096053.4:c.3242T>C	ENSMUSP00000093758.3:p.Ile1081Thr	H-2-Kb	8	5	7	AYYLTYTL	AYYLTYIL	NetMHC	157.88	325.67	2.063	707	0.05	364.856	839.945	2.302	325.67	157.88	374.5	180.5	1305.389154	569.823033	1434.630303	549.2119775	M6_p20	0.328571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.055	707	0	0	NA	19qC3	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.258296258	sgMsh2	cell line
chr2	16357184	16357184	T	C	ENSMUST00000028081.12	1	ENSMUSG00000026748	missense	F/S	20	Plxdc2	ENSMUST00000028081.12:c.59T>C	ENSMUSP00000028081.6:p.Phe20Ser	H-2-Kb	8	5	7	VMLLCHSL	VMLLCHFL	NetMHCpan	111.4	240.8	2.162	123	0.138	167.948	200.33	1.193	262.88	161.82	240.8	111.4	154.0777756	181.0256018	159.8600704	174.0764414	M6_p20	1.685714286	1.742857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.143	123	0	0	NA	2qA2	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.67157027	sgMsh2	cell line
chr19	44973627	44973627	T	C	ENSMUST00000096053.4	1	ENSMUSG00000036097	missense	I/T	1081	Slf2	ENSMUST00000096053.4:c.3242T>C	ENSMUSP00000093758.3:p.Ile1081Thr	H-2-Kb	8	6	6	YYLTYTLL	YYLTYILL	NetMHCpan	165.3	361.7	2.188	707	0.05	245.167	350.171	1.428	417.91	195.39	361.7	165.3	333.2268594	301.8144301	338.6413603	294.9442949	M6_p20	1.057142857	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.055	707	0	0	NA	19qC3	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.258296258	sgMsh2	cell line
chr2	20859758	20859758	T	G	ENSMUST00000154230.8	1	ENSMUSG00000036591	missense	K/N	1228	Arhgap21	ENSMUST00000154230.8:c.3684A>C	ENSMUSP00000122497.2:p.Lys1228Asn	H-2-Kb	8	10	2	LNSFFRKL	LKSFFRKL	NetMHCpan	63	1547.8	24.568	167	0.144	325.727	2018.704	6.198	4540.17	230.01	1547.8	63	2097.683683	426.324214	1939.724271	421.444121	M6_p20	-0.471428571	-0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.138	167	0	0	NA	2qA3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.648088792	sgMsh2	cell line
chr2	24687761	24687761	A	G	ENSMUST00000041342.11	1	ENSMUSG00000004113	missense	L/P	700	Cacna1b	ENSMUST00000041342.11:c.2099T>C	ENSMUSP00000037416.5:p.Leu700Pro	H-2-Kb	8	5	7	LFGNYTPL	LFGNYTLL	SMMPMBEC	165.097	454.716	2.754	165	0.097	222.376	562.888	2.531	663.17	251.67	614.4	324.9	511.3755976	193.0812048	454.715753	165.0973111	M6_p20	-0.128571429	-0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.112	165	0	0	NA	2qA3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.525985106	sgMsh2	cell line
chr19	41256264	41256264	T	C	ENSMUST00000237871.1	NA	ENSMUSG00000025016	missense	Y/C	58	Tm9sf3	ENSMUST00000237871.1:c.173A>G	ENSMUSP00000158318.1:p.Tyr58Cys	H-2-Kb	8	7	5	ETYKCFSL	ETYKYFSL	SMMPMBEC	339.422	34.733	0.102	236	0.102	423.919	29.141	0.069	23.55	728.5	20.1	383.6	41.47056956	464.2372661	34.73281635	339.4220093	M6_p20	0.342857143	0.342857143	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.096	236	0	0	NA	19qC3	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.450844377	sgMsh2	cell line
chr19	38795525	38795525	A	G	ENSMUST00000025963.7	1	ENSMUSG00000024999	missense	Y/H	580	Noc3l	ENSMUST00000025963.7:c.1738T>C	ENSMUSP00000025963.7:p.Tyr580His	H-2-Kb	8	11	1	HTHLYKTL	YTHLYKTL	SMMPMBEC	323.4	167.009	0.516	738	0.137	480.348	160.895	0.335	154.78	777.63	65.4	490	200.7890385	470.6954498	167.0090478	323.3999884	M6_p20	-0.314285714	-0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.14	738	0	0	NA	19qC3	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.657481383	sgMsh2	cell line
chr19	44153684	44153684	A	G	ENSMUST00000042026.4	1	ENSMUSG00000037578	missense	V/A	545	Pkd2l1	ENSMUST00000042026.4:c.1634T>C	ENSMUSP00000045675.4:p.Val545Ala	H-2-Kb	9	8	4	VTYAFFVFF	VTYVFFVFF	NetMHC	18.25	16.24	0.89	236	0.093	21.619	16.215	0.75	16.24	18.25	64.3	35.8	13.30791444	21.04311361	16.19011748	22.19473684	M6_p20	2.271428571	2.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.1	236	0	0	NA	19qC3	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.469629559	sgMsh2	cell line
chr19	44973627	44973627	T	C	ENSMUST00000096053.4	1	ENSMUSG00000036097	missense	I/T	1081	Slf2	ENSMUST00000096053.4:c.3242T>C	ENSMUSP00000093758.3:p.Ile1081Thr	H-2-Kb	9	5	7	AYYLTYTLL	AYYLTYILL	NetMHC	38.65	71.83	1.858	707	0.05	52.197	70.367	1.348	71.83	38.65	163.4	63.7	44.06664633	41.69749833	68.90488306	62.69746764	M6_p20	1.057142857	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.055	707	0	0	NA	19qC3	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.258296258	sgMsh2	cell line
chr19	44153684	44153684	A	G	ENSMUST00000042026.4	1	ENSMUSG00000037578	missense	V/A	545	Pkd2l1	ENSMUST00000042026.4:c.1634T>C	ENSMUSP00000045675.4:p.Val545Ala	H-2-Kb	9	11	1	AFFVFFVLL	VFFVFFVLL	SMM	22.757	7.658	0.337	236	0.093	34.218	15.048	0.44	19.57	39.38	85	173.7	7.657905451	22.7567375	10.52567606	29.05694826	M6_p20	3.485714286	3.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.1	236	0	0	NA	19qC3	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.469629559	sgMsh2	cell line
chr2	24687761	24687761	A	G	ENSMUST00000041342.11	1	ENSMUSG00000004113	missense	L/P	700	Cacna1b	ENSMUST00000041342.11:c.2099T>C	ENSMUSP00000037416.5:p.Leu700Pro	H-2-Kb	9	4	8	TLFGNYTPL	TLFGNYTLL	NetMHCpan	51	85.6	1.678	165	0.097	88.814	134.728	1.517	105.68	60.07	85.6	51	193.2457716	151.7434661	163.775902	117.5574075	M6_p20	-0.128571429	-1.27E-16	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.112	165	0	0	NA	2qA3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.525985106	sgMsh2	cell line
chr19	44153684	44153684	A	G	ENSMUST00000042026.4	1	ENSMUSG00000037578	missense	V/A	545	Pkd2l1	ENSMUST00000042026.4:c.1634T>C	ENSMUSP00000045675.4:p.Val545Ala	H-2-Kb	9	5	7	VYFVTYAFF	VYFVTYVFF	SMM	53.347	76.933	1.442	236	0.093	78.174	169.486	2.168	233.23	78.32	694.7	138.5	76.93252737	53.3469998	105.7426037	78.02791461	M6_p20	1.771428571	1.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.1	236	0	0	NA	19qC3	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.469629559	sgMsh2	cell line
chr19	47733582	47733582	A	G	ENSMUST00000099353.5	1	ENSMUSG00000025066	missense	S/G	146	Sfr1	ENSMUST00000099353.5:c.436A>G	ENSMUSP00000096954.4:p.Ser146Gly	H-2-Kb	9	5	7	SSHSFCGVV	SSHSFCSVV	NetMHC	126.54	73.19	0.578	373	0.123	302.608	204.113	0.675	73.19	126.54	128.9	189.2	279.3251239	416.0159675	366.6485738	466.9280884	M6_p20	1.328571429	1.328571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.122	373	0	0	NA	19qD1	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.572948062	sgMsh2	cell line
chr2	23110710	23110710	A	G	ENSMUST00000114529.9	1	ENSMUSG00000026781	missense	I/M	488	Acbd5	ENSMUST00000114529.9:c.1464A>G	ENSMUSP00000110175.2:p.Ile488Met	H-2-Kb	9	10	2	IMWPFIAQW	IIWPFIAQW	NetMHC	145.25	189.33	1.303	218	0.151	256.387	559.523	2.182	189.33	145.25	850.1	568	764.0292757	341.2793414	355.017695	171.4944225	M6_p20	0.314285714	1.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.161	218	0	0	NA	2qA3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.756103591	sgMsh2	cell line
chr19	44973627	44973627	T	C	ENSMUST00000096053.4	1	ENSMUSG00000036097	missense	I/T	1081	Slf2	ENSMUST00000096053.4:c.3242T>C	ENSMUSP00000093758.3:p.Ile1081Thr	H-2-Kb	9	4	8	QAYYLTYTL	QAYYLTYIL	NetMHCpan	118.9	287.1	2.415	707	0.05	148.952	306.938	2.061	357.17	145.46	287.1	118.9	170.2589693	152.4438821	326.7758854	276.8534884	M6_p20	0.328571429	0.328571429	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.055	707	0	0	NA	19qC3	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.258296258	sgMsh2	cell line
chr19	41232352	41232352	CA	C	ENSMUST00000237871.1	NA	ENSMUSG00000025016	FS	F/X	390	Tm9sf3	ENSMUST00000237871.1:c.1170del	ENSMUSP00000158318.1:p.Phe390LeufsTer18	H-2-Kb	9	13	0	QWWPFVASV	NA	NetMHC	158.39	NA	NA	238	0.105	351.035	NA	NA	NA	158.39	NA	422.1	NA	279.9690348	NA	484.4511598	M6_p20	1.385714286	1.385714286	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.094	238	0	0	NA	19qC3	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.441451786	sgMsh2	cell line
chr2	13444324	13444324	T	C	ENSMUST00000091436.6	5	ENSMUSG00000026726	missense	E/G	980	Cubn	ENSMUST00000091436.6:c.2939A>G	ENSMUSP00000089009.5:p.Glu980Gly	H-2-Kb	9	4	8	VFSSFYLGF	VFSSFYLEF	SMM	101.651	116.711	1.148	183	0.148	184.67	276.944	1.5	372.65	205.94	425.2	408.8	116.7105189	101.6506125	181.2383084	163.3992279	M6_p20	0.871428571	1.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.153	183	0	0	NA	2qA1	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.718533226	sgMsh2	cell line
chr19	46585712	46585712	C	T	ENSMUST00000026011.7	1	ENSMUSG00000025036	missense	P/S	114	Sfxn2	ENSMUST00000026011.7:c.340C>T	ENSMUSP00000026011.6:p.Pro114Ser	H-2-Kb	9	11	1	SAVIFWQWV	PAVIFWQWV	SMM	269.842	653.296	2.421	203	0.054	287.27	3278	11.411	5802.21	279.25	9993.3	454.7	653.2960014	269.8422814	753.7893549	295.2908568	M6_p20	1.485714286	1.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.058	203	0	0	NA	19qC3	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.272385144	sgMsh2	cell line
chr19	41232352	41232352	CA	C	ENSMUST00000237871.1	NA	ENSMUSG00000025016	FS	F/X	390	Tm9sf3	ENSMUST00000237871.1:c.1170del	ENSMUSP00000158318.1:p.Phe390LeufsTer18	H-2-Kb	9	19	0	ASVSLLSFL	NA	NetMHC	310.28	NA	NA	238	0.105	433.65	NA	NA	NA	310.28	NA	332.6	NA	534.6997733	NA	671.8154697	M6_p20	2.4	2.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.094	238	0	0	NA	19qC3	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.441451786	sgMsh2	cell line
chr19	50333459	50333459	C	A	ENSMUST00000209413.1	1	ENSMUSG00000043531	missense	K/N	295	Sorcs1	ENSMUST00000209413.1:c.885G>T	ENSMUSP00000147463.1:p.Lys295Asn	H-2-Kb	9	4	8	LAYSQDQNL	LAYSQDQKL	SMM	213.359	322.931	1.514	179	0.078	330.13	670.548	2.031	984.44	359.48	1692.8	600	322.9311952	213.3585248	356.6563823	300.7807237	M6_p20	-1.757142857	-1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.095	179	0	0	NA	19qD1	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.446148081	sgMsh2	cell line
chr19	44973627	44973627	T	C	ENSMUST00000096053.4	1	ENSMUSG00000036097	missense	I/T	1081	Slf2	ENSMUST00000096053.4:c.3242T>C	ENSMUSP00000093758.3:p.Ile1081Thr	H-2-Kb	9	8	4	LTYTLLHLV	LTYILLHLV	NetMHCpan	420.8	764.9	1.818	707	0.05	426.798	410.951	0.963	451.86	440.77	764.9	420.8	360.6699835	420.8332054	370.0411313	432.7628777	M6_p20	1.485714286	1.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.055	707	0	0	NA	19qC3	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.258296258	sgMsh2	cell line
chr19	44153684	44153684	A	G	ENSMUST00000042026.4	1	ENSMUSG00000037578	missense	V/A	545	Pkd2l1	ENSMUST00000042026.4:c.1634T>C	ENSMUSP00000045675.4:p.Val545Ala	H-2-Kb	9	10	2	YAFFVFFVL	YVFFVFFVL	SMMPMBEC	210.984	243.921	1.156	236	0.093	312.217	409.242	1.311	559	489.13	827.6	393.7	259.483651	230.7331526	243.9214539	210.9842323	M6_p20	3.342857143	3.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.1	236	0	0	NA	19qC3	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.469629559	sgMsh2	cell line
chr19	44153684	44153684	A	G	ENSMUST00000042026.4	1	ENSMUSG00000037578	missense	V/A	545	Pkd2l1	ENSMUST00000042026.4:c.1634T>C	ENSMUSP00000045675.4:p.Val545Ala	H-2-Kb	10	8	4	VTYAFFVFFV	VTYVFFVFFV	NetMHC	55.76	45.18	0.81	236	0.093	458.736	672.477	1.466	45.18	55.76	412	191.6	1433.276565	902.2564596	932.9535036	725.8719263	M6_p20	3.057142857	3.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.1	236	0	0	NA	19qC3	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.469629559	sgMsh2	cell line
chr19	44153684	44153684	A	G	ENSMUST00000042026.4	1	ENSMUSG00000037578	missense	V/A	545	Pkd2l1	ENSMUST00000042026.4:c.1634T>C	ENSMUSP00000045675.4:p.Val545Ala	H-2-Kb	11	8	4	VTYAFFVFFVL	VTYVFFVFFVL	NetMHC	35.43	29.25	0.826	236	0.093	424.25	451.635	1.065	29.25	35.43	165.4	84.7	1782.871325	1782.871325	737.8702492	763.8006085	M6_p20	3.342857143	3.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.1	236	0	0	NA	19qC3	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.469629559	sgMsh2	cell line
chr2	65763849	65763849	T	C	ENSMUST00000028377.13	5	ENSMUSG00000075318	missense	S/P	1681	Scn2a	ENSMUST00000028377.13:c.5041T>C	ENSMUSP00000028377.7:p.Ser1681Pro	H-2-Db	9	8	4	FGMPNFAYV	FGMSNFAYV	NetMHCpan	10.7	5.9	0.551	340	0.159	61.961	27.758	0.448	4.26	11.3	5.9	10.7	49.6158002	112.621161	50.5324087	118.732606	M6_p20	0.614285714	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.158	340	0	0	NA	2qC1.3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.742014704	sgMsh2	cell line
chr2	37790466	37790466	T	C	ENSMUST00000050372.9	5	ENSMUSG00000035403	missense	F/L	469	Crb2	ENSMUST00000050372.9:c.1405T>C	ENSMUSP00000058007.7:p.Phe469Leu	H-2-Db	9	7	5	LALRLRTTL	LALRFRTTL	SMM	127.826	330.081	2.582	75	0.213	152.598	365.275	2.394	278.88	139.02	657.5	644.7	330.0806	127.8262358	400.4700113	166.1766501	M6_p20	0.142857143	0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	75	0	0	NA	2qB	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.939259119	sgMsh2	cell line
chr2	76915603	76915603	A	G	ENSMUST00000099980.9	5	ENSMUSG00000051747	missense	V/A	5034	Ttn	ENSMUST00000099980.9:c.15101T>C	ENSMUSP00000097560.3:p.Val5034Ala	H-2-Db	9	10	2	NASRNLSEL	NVSRNLSEL	SMM	183.916	1176.576	6.397	181	0.11	271.57	2250.955	8.289	9774.46	689.86	3057.9	316.9	1176.57604	183.9162063	1444.009332	226.2403167	M6_p20	-0.785714286	-0.785714286	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.105	181	0	0	NA	2qC3	chr2-76867311-82253895	5	3	2	0.93	4.367554902	NA	1	0.493111037	sgMsh2	cell line
chr2	36422162	36422162	A	T	ENSMUST00000216645.1	3	ENSMUSG00000094464	missense	I/F	255	Olfr339	ENSMUST00000216645.1:c.763A>T	ENSMUSP00000149068.1:p.Ile255Phe	H-2-Kb	8	4	8	VSLYYGAF	VSLYYGAI	NetMHC	20.3	8.51	0.419	623	0.144	56.21	23.161	0.412	8.51	20.3	9.7	32.3	37.73462166	94.56708451	36.62182643	80.11982647	M6_p20	0.657142857	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.143	623	0	0	NA	2qB	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.67157027	sgMsh2	cell line
chr2	52137428	52137428	AT	A	ENSMUST00000036934.11	5	ENSMUSG00000026950	FS	I/X	7097	Neb	ENSMUST00000036934.11:c.21289del	ENSMUSP00000047763.5:p.Ile7097SerfsTer9	H-2-Kb	8	11	1	SSVLYMTI	NA	NetMHC	21.86	NA	NA	86	0.174	84.519	NA	NA	NA	21.86	NA	31.4	NA	137.6385219	NA	137.9558114	M6_p20	1.657142857	1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.187	86	0	0	NA	2qC1.1	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.878207276	sgMsh2	cell line
chr2	36422142	36422142	T	C	ENSMUST00000216645.1	3	ENSMUSG00000094464	missense	V/A	248	Olfr339	ENSMUST00000216645.1:c.743T>C	ENSMUSP00000149068.1:p.Val248Ala	H-2-Kb	8	11	1	ASLYYGAI	VSLYYGAI	NetMHCpan	32.7	9.7	0.297	725	0.146	79.694	23.161	0.291	8.51	33.86	9.7	32.7	37.73462166	142.1477533	36.62182643	125.5278239	M6_p20	0.9	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.139	725	0	0	NA	2qB	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.652785087	sgMsh2	cell line
chr2	75891847	75891847	TA	T	ENSMUST00000047232.13	1	ENSMUSG00000042410	FS	L/X	460	Agps	ENSMUST00000047232.13:c.1385del	ENSMUSP00000041967.7:p.Lys462SerfsTer15	H-2-Kb	8	12	2	KSFILQSL	NA	NetMHCpan	35.3	NA	NA	52	0.212	53.579	NA	NA	NA	36.08	NA	35.3	NA	71.07878574	NA	81.98605697	M6_p20	1.4	1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.208	52	0	0	NA	2qC3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.976829483	sgMsh2	cell line
chr2	83803240	83803240	A	T	ENSMUST00000028499.10	1	ENSMUSG00000027087	missense	M/L	1014	Itgav	ENSMUST00000028499.10:c.3040A>T	ENSMUSP00000028499.4:p.Met1014Leu	H-2-Kb	8	4	8	LVFVMYRL	LVFVMYRM	NetMHCpan	26.5	84.2	3.177	274	0.099	44.564	166.85	3.744	135.21	38.46	84.2	26.5	261.0597994	65.12383991	198.4906254	50.66872779	M6_p20	1.585714286	1.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.09	274	0	0	NA	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.422666603	sgMsh2	cell line
chr2	32673367	32673367	A	G	ENSMUST00000009705.13	1	ENSMUSG00000026814	missense	T/A	312	Eng	ENSMUST00000009705.13:c.934A>G	ENSMUSP00000009705.7:p.Thr312Ala	H-2-Kb	8	9	3	IVASFVEL	IVTSFVEL	NetMHCpan	22.7	36.5	1.608	83	0.108	84.25	86.074	1.022	64.07	68.33	36.5	22.7	111.8767908	100.1705365	108.0786721	107.0878008	M6_p20	1.785714286	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.109	83	0	0	NA	2qB	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.51189622	sgMsh2	cell line
chr2	32673367	32673367	A	G	ENSMUST00000009705.13	1	ENSMUSG00000026814	missense	T/A	312	Eng	ENSMUST00000009705.13:c.934A>G	ENSMUSP00000009705.7:p.Thr312Ala	H-2-Kb	8	11	1	ASFVELPL	TSFVELPL	SMMPMBEC	56.72	44.539	0.785	83	0.108	72.04	60.417	0.839	73.04	82.88	54.5	61.2	66.33458249	83.70280268	44.53895263	56.7204934	M6_p20	1.242857143	1.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.109	83	0	0	NA	2qB	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.51189622	sgMsh2	cell line
chr2	55437642	55437642	T	C	ENSMUST00000067101.9	1	ENSMUSG00000026824	missense	Y/H	148	Kcnj3	ENSMUST00000067101.9:c.442T>C	ENSMUSP00000063329.3:p.Tyr148His	H-2-Kb	8	7	5	IGYGHRYI	IGYGYRYI	NetMHCpan	87.5	14.1	0.161	106	0.104	112.821	23.035	0.204	8.7	88.95	14.1	87.5	35.29717922	136.691025	31.96980594	138.2738324	M6_p20	-0.942857143	-0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.125	106	0	0	NA	2qC1.1	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.587036949	sgMsh2	cell line
chr2	83803240	83803240	A	T	ENSMUST00000028499.10	1	ENSMUSG00000027087	missense	M/L	1014	Itgav	ENSMUST00000028499.10:c.3040A>T	ENSMUSP00000028499.4:p.Met1014Leu	H-2-Kb	8	7	5	VMYRLGFF	VMYRMGFF	NetMHCpan	53.3	49	0.919	274	0.099	165.952	152.3	0.918	85.45	98.16	49	53.3	261.0597994	270.2340064	219.1492557	233.7437461	M6_p20	0.728571429	0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.09	274	0	0	NA	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.422666603	sgMsh2	cell line
chr2	65763849	65763849	T	C	ENSMUST00000028377.13	5	ENSMUSG00000075318	missense	S/P	1681	Scn2a	ENSMUST00000028377.13:c.5041T>C	ENSMUSP00000028377.7:p.Ser1681Pro	H-2-Kb	8	9	3	GMPNFAYV	GMSNFAYV	NetMHC	188.79	1429.79	7.573	340	0.159	469.967	1409.455	2.999	1429.79	188.79	1598	782.9	1389.120754	518.4895408	1017.981768	421.444121	M6_p20	0.614285714	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.158	340	0	0	NA	2qC1.3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.742014704	sgMsh2	cell line
chr2	76732118	76732118	GT	G	ENSMUST00000111846.8	5	ENSMUSG00000051747	FS	K/X	27048	Ttn	ENSMUST00000111846.8:c.81144del	ENSMUSP00000107477.2:p.Lys27048AsnfsTer39	H-2-Kb	8	24	0	KIWKSASL	NA	SMMPMBEC	197.124	NA	NA	256	0.168	216.815	NA	NA	NA	218.48	NA	312.2	NA	215.149331	NA	197.1242255	M6_p20	0.528571429	0.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.171	256	0	0	NA	2qC3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.803066546	sgMsh2	cell line
chr2	84612086	84612086	CT	C	ENSMUST00000189772.1	5	ENSMUSG00000101645	FS	K/X	634	Gm28635	ENSMUST00000189772.1:c.1901del	ENSMUSP00000141166.1:p.Lys634SerfsTer48	H-2-Kb	8	42	0	CEYTFHSL	NA	SMM	67.103	NA	NA	137	0.175	164.226	NA	NA	NA	320.59	NA	242.8	NA	67.10270075	NA	85.65249141	M6_p20	-0.414285714	-0.414285714	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.171	137	0	0	NA	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.803066546	sgMsh2	cell line
chr2	37405335	37405335	A	C	ENSMUST00000100143.9	5	ENSMUSG00000075376	missense	V/G	223	Rc3h2	ENSMUST00000100143.9:c.668T>G	ENSMUSP00000097721.3:p.Val223Gly	H-2-Kb	8	8	4	VLFGVQRL	VLFVVQRL	NetMHCpan	165.8	52.4	0.316	162	0.068	207.26	71.12	0.343	63.22	364.58	52.4	165.8	79.02054124	199.8664966	79.93555598	214.6545013	M6_p20	0.885714286	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.079	162	0	0	NA	2qB	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.371007352	sgMsh2	cell line
chr2	73568222	73568222	A	G	ENSMUST00000028515.3	1	ENSMUSG00000027107	missense	V/A	291	Chrna1	ENSMUST00000028515.3:c.872T>C	ENSMUSP00000028515.3:p.Val291Ala	H-2-Kb	8	6	6	STSSAAPL	STSSAVPL	SMM	311.702	901.032	2.891	260	0.2	403.465	1443.597	3.578	1873.89	455.58	2427.9	1290.8	901.0315536	311.7022951	1013.304567	351.3500341	M6_p20	0.5	0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.213	260	0	0	NA	2qC3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr2	76732118	76732118	GT	G	ENSMUST00000111846.8	5	ENSMUSG00000051747	FS	K/X	27048	Ttn	ENSMUST00000111846.8:c.81144del	ENSMUSP00000107477.2:p.Lys27048AsnfsTer39	H-2-Kb	8	29	0	ASLQLPKL	NA	SMMPMBEC	291.568	NA	NA	256	0.168	323.533	NA	NA	NA	467.13	NA	352.8	NA	294.2659418	NA	291.5680954	M6_p20	0.228571429	0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.171	256	0	0	NA	2qC3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.803066546	sgMsh2	cell line
chr2	67513258	67513258	GA	G	ENSMUST00000028410.3	1	ENSMUSG00000027022	FS	K/X	1948	Xirp2	ENSMUST00000028410.3:c.5846del	ENSMUSP00000028410.3:p.Asn1949MetfsTer20	H-2-Kb	8	11	2	KMRRAFNL	NA	NetMHCpan	331.8	NA	NA	51	0.255	482.42	NA	NA	NA	533.58	NA	331.8	NA	431.2608157	NA	544.1767718	M6_p20	-0.314285714	-0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.285	51	0	0	NA	2qC1.3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	2	1	sgMsh2	cell line
chr2	36422162	36422162	A	T	ENSMUST00000216645.1	3	ENSMUSG00000094464	missense	I/F	255	Olfr339	ENSMUST00000216645.1:c.763A>T	ENSMUSP00000149068.1:p.Ile255Phe	H-2-Kb	9	4	8	VSLYYGAFI	VSLYYGAII	NetMHCpan	33.9	59	1.74	623	0.144	143.531	163.782	1.141	101.49	43.14	59	33.9	247.8049629	289.8077532	226.073678	243.9214539	M6_p20	1.414285714	1.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.143	623	0	0	NA	2qB	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.67157027	sgMsh2	cell line
chr2	35422190	35422190	A	G	ENSMUST00000102794.7	1	ENSMUSG00000035778	missense	Y/H	59	Ggta1	ENSMUST00000102794.7:c.175T>C	ENSMUSP00000099858.1:p.Tyr59His	H-2-Kb	9	4	8	VVVVFWEHV	VVVVFWEYV	NetMHC	48.89	78.19	1.599	188	0.16	111.82	155.423	1.39	78.19	48.89	170.7	86.2	143.2550696	137.4390042	167.5907328	153.196908	M6_p20	1.114285714	2.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.168	188	0	0	NA	2qB	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.78897766	sgMsh2	cell line
chr2	36422142	36422142	T	C	ENSMUST00000216645.1	3	ENSMUSG00000094464	missense	V/A	248	Olfr339	ENSMUST00000216645.1:c.743T>C	ENSMUSP00000149068.1:p.Val248Ala	H-2-Kb	9	10	2	VASLYYGAI	VVSLYYGAI	NetMHCpan	41.6	59.5	1.43	725	0.146	87.035	105.607	1.213	66.92	49.26	59.5	41.6	164.1005362	145.9183802	144.2945739	124.8101773	M6_p20	0.9	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.139	725	0	0	NA	2qB	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.652785087	sgMsh2	cell line
chr2	71421695	71421695	T	C	ENSMUST00000028408.2	1	ENSMUSG00000027018	missense	V/A	257	Hat1	ENSMUST00000028408.2:c.770T>C	ENSMUSP00000028408.2:p.Val257Ala	H-2-Kb	9	10	2	TAHRYYISF	TVHRYYISF	NetMHCpan	47.9	55.5	1.159	103	0.126	103.154	124.62	1.208	116.73	91.69	55.5	47.9	142.5968723	126.7972983	132.5104107	114.6172542	M6_p20	-0.542857143	-0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.14	103	0	0	NA	2qC2	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.657481383	sgMsh2	cell line
chr2	36422162	36422162	A	T	ENSMUST00000216645.1	3	ENSMUSG00000094464	missense	I/F	255	Olfr339	ENSMUST00000216645.1:c.763A>T	ENSMUSP00000149068.1:p.Ile255Phe	H-2-Kb	9	3	9	VVSLYYGAF	VVSLYYGAI	NetMHC	95.95	66.92	0.697	623	0.144	109.707	105.607	0.963	66.92	95.95	59.5	150.8	164.1005362	111.4576803	144.2945739	107.9567993	M6_p20	0.657142857	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.143	623	0	0	NA	2qB	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.67157027	sgMsh2	cell line
chr2	36890485	36890485	T	C	ENSMUST00000217215.2	5	ENSMUSG00000075382	missense	Y/C	121	Olfr353	ENSMUST00000217215.2:c.362A>G	ENSMUSP00000149378.1:p.Tyr121Cys	H-2-Kb	9	6	6	MAYDRCVAI	MAYDRYVAI	NetMHCpan	132.7	14.4	0.109	547	0.137	145.305	30.259	0.208	27.08	145.65	14.4	132.7	39.27443988	184.1238299	33.43874735	144.9606074	M6_p20	0.528571429	0.528571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.142	547	0	0	NA	2qB	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.666873974	sgMsh2	cell line
chr2	36422162	36422162	A	T	ENSMUST00000216645.1	3	ENSMUSG00000094464	missense	I/F	255	Olfr339	ENSMUST00000216645.1:c.763A>T	ENSMUSP00000149068.1:p.Ile255Phe	H-2-Kb	9	6	6	LYYGAFIGL	LYYGAIIGL	SMM	119.154	421.803	3.54	623	0.144	154.202	569.436	3.693	766.3	168.39	604	152	421.8033261	119.1543769	534.872168	156.4047722	M6_p20	1.542857143	1.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.143	623	0	0	NA	2qB	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.67157027	sgMsh2	cell line
chr2	76713049	76713049	T	C	ENSMUST00000111846.8	5	ENSMUSG00000051747	missense	T/A	31452	Ttn	ENSMUST00000111846.8:c.94354A>G	ENSMUSP00000107477.2:p.Thr31452Ala	H-2-Kb	9	11	1	AAPEYYAPE	TAPEYYAPE	NetMHC	172.14	138.74	0.806	145	0.138	194.053	159.64	0.823	138.74	172.14	746	697.8	170.2589693	200.4979793	149.021867	187.6074152	M6_p20	-1.571428571	-0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.116	145	0	0	NA	2qC3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.544770289	sgMsh2	cell line
chr2	52105483	52105483	C	T	ENSMUST00000112693.9	5	ENSMUSG00000036202	missense	L/F	905	Rif1	ENSMUST00000112693.9:c.2713C>T	ENSMUSP00000108313.2:p.Leu905Phe	H-2-Kb	9	3	9	VACLQFSYF	VACLQFSYL	NetMHC	191.1	33.73	0.177	285	0.2	209.082	96.414	0.461	33.73	191.1	75	428	127.0895963	214.3433431	117.8284053	203.8215031	M6_p20	0.9	1.542857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	285	0	0	NA	2qC1.1	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.939259119	sgMsh2	cell line
chr2	32673367	32673367	A	G	ENSMUST00000009705.13	1	ENSMUSG00000026814	missense	T/A	312	Eng	ENSMUST00000009705.13:c.934A>G	ENSMUSP00000009705.7:p.Thr312Ala	H-2-Kb	9	8	4	SIVASFVEL	SIVTSFVEL	NetMHCpan	172	152.9	0.889	83	0.108	379.729	326.134	0.859	207.38	242.91	152.9	172	461.4344339	516.547186	444.8872915	529.9684305	M6_p20	1.785714286	2.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.109	83	0	0	NA	2qB	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.51189622	sgMsh2	cell line
chr2	83803240	83803240	A	T	ENSMUST00000028499.10	1	ENSMUSG00000027087	missense	M/L	1014	Itgav	ENSMUST00000028499.10:c.3040A>T	ENSMUSP00000028499.4:p.Met1014Leu	H-2-Kb	9	5	7	VFVMYRLGF	VFVMYRMGF	NetMHC	295.03	169.93	0.576	274	0.099	362.064	348.471	0.962	169.93	295.03	481.2	705.8	331.9785319	354.0870144	364.9639766	370.0411313	M6_p20	0.928571429	1.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.09	274	0	0	NA	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.422666603	sgMsh2	cell line
chr2	84612086	84612086	CT	C	ENSMUST00000189772.1	5	ENSMUSG00000101645	FS	K/X	634	Gm28635	ENSMUST00000189772.1:c.1901del	ENSMUSP00000141166.1:p.Lys634SerfsTer48	H-2-Kb	9	22	0	ISLKELVLL	NA	NetMHCpan	270.3	NA	NA	137	0.175	297.293	NA	NA	NA	304.61	NA	270.3	NA	295.876178	NA	298.7101638	M6_p20	1.714285714	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.171	137	0	0	NA	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.803066546	sgMsh2	cell line
chr2	32673367	32673367	A	G	ENSMUST00000009705.13	1	ENSMUSG00000026814	missense	T/A	312	Eng	ENSMUST00000009705.13:c.934A>G	ENSMUSP00000009705.7:p.Thr312Ala	H-2-Kb	9	11	1	ASFVELPLV	TSFVELPLV	SMM	299.992	254.748	0.849	83	0.108	371.47	300.368	0.809	268.65	327.64	378.9	415.3	254.7475407	299.9922256	332.0855664	418.0709584	M6_p20	1.957142857	1.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.109	83	0	0	NA	2qB	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.51189622	sgMsh2	cell line
chr2	90139121	90139121	A	C	ENSMUST00000215153.2	2	ENSMUSG00000075066	missense	V/G	6	Olfr32	ENSMUST00000215153.2:c.17T>G	ENSMUSP00000150246.1:p.Val6Gly	H-2-Db	9	1	6	MAFVNGTEL	MAFVNVTEL	NetMHCpan	5.5	5.1	0.927	624	0.082	14.228	13.219	0.929	9.55	8.2	5.1	5.5	20.21249847	23.04729708	16.88768035	20.25676081	M6_p20	0.385714286	0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.083	624	0	0	NA	2qE1	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.389792534	sgMsh2	cell line
chr2	86170923	86170923	T	G	ENSMUST00000215171.1	5	ENSMUSG00000075200	missense	K/T	298	Olfr1044	ENSMUST00000215171.1:c.893A>C	ENSMUSP00000150199.1:p.Lys298Thr	H-2-Db	9	3	9	YSLRNKEVT	YSLRNKEVK	NetMHC	87.92	1335.88	15.194	362	0.108	176.299	819.153	4.646	1335.88	87.92	5047.6	192.8	302.4266091	282.2409336	223.1361832	159.7975071	M6_p20	-1.157142857	-1.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.111	362	0	0	NA	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.521288811	sgMsh2	cell line
chr2	87418564	87418564	CA	C	ENSMUST00000054974.1	NA	ENSMUSG00000043274	FS	Q/X	172	Olfr1123	ENSMUST00000054974.1:c.517del	ENSMUSP00000058786.1:p.Thr173HisfsTer35	H-2-Db	9	34	0	HQYSNLLVV	NA	NetMHC	103.9	NA	NA	542	0.089	214.459	NA	NA	NA	103.9	NA	140.8	NA	292.8329887	NA	288.1177403	M6_p20	1.485714286	1.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.089	542	0	0	NA	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.417970308	sgMsh2	cell line
chr2	87418564	87418564	CA	C	ENSMUST00000054974.1	NA	ENSMUSG00000043274	FS	Q/X	172	Olfr1123	ENSMUST00000054974.1:c.517del	ENSMUSP00000058786.1:p.Thr173HisfsTer35	H-2-Db	9	15	0	FSLCLFVAL	NA	NetMHC	117.88	NA	NA	542	0.089	212.776	NA	NA	NA	117.88	NA	482.2	NA	196.1643123	NA	229.387633	M6_p20	3.242857143	3.242857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.089	542	0	0	NA	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.417970308	sgMsh2	cell line
chr2	88006632	88006632	T	G	ENSMUST00000099839.3	NA	ENSMUSG00000075141	missense	M/L	49	Olfr1160	ENSMUST00000099839.3:c.145A>C	ENSMUSP00000097427.3:p.Met49Leu	H-2-Db	9	3	9	FSIYSITLL	FSIYSITLM	NetMHC	196.44	127.02	0.647	593	0.103	334.623	267.366	0.799	127.02	196.44	241.9	253.7	292.8329887	415.5468552	336.9535219	439.1066356	M6_p20	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.114	593	0	0	NA	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.535377698	sgMsh2	cell line
chr2	88006632	88006632	T	G	ENSMUST00000099839.3	NA	ENSMUSG00000075141	missense	M/L	49	Olfr1160	ENSMUST00000099839.3:c.145A>C	ENSMUSP00000097427.3:p.Met49Leu	H-2-Db	9	6	6	YSITLLGNI	YSITLMGNI	NetMHC	256.69	185.65	0.723	593	0.103	487.354	413.213	0.848	185.65	256.69	1299.1	1238	453.5445995	515.9647117	372.8807814	458.7435806	M6_p20	1.714285714	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.114	593	0	0	NA	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.535377698	sgMsh2	cell line
chr2	88392008	88392008	T	A	ENSMUST00000214040.2	5	ENSMUSG00000056995	missense	F/I	254	Olfr1178	ENSMUST00000214040.2:c.760T>A	ENSMUSP00000150036.1:p.Phe254Ile	H-2-Db	9	6	6	FAPLLIIYI	FAPLLFIYI	SMM	198.436	173.628	0.875	359	0.103	268.987	188.901	0.702	188.32	328.77	508	725.7	173.6280949	198.4357879	189.48289	209.2040077	M6_p20	2.6	2.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.107	359	0	0	NA	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.502503628	sgMsh2	cell line
chr2	86146018	86146018	GA	G	ENSMUST00000099909.1	NA	ENSMUSG00000075203	FS	S/X	239	Olfr1040	ENSMUST00000099909.1:c.715del	ENSMUSP00000097493.1:p.Ser239ProfsTer7	H-2-Db	9	8	4	KAFPLVHPI	NA	SMMPMBEC	409.798	NA	NA	756	0.152	473.396	NA	NA	NA	679.45	NA	527.4	NA	419.3918629	NA	409.7981561	M6_p20	1.271428571	1.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.142	756	0	0	NA	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.666873974	sgMsh2	cell line
chr2	87802800	87802800	C	T	ENSMUST00000090708.1	NA	ENSMUSG00000068815	missense	T/I	137	Olfr1143	ENSMUST00000090708.1:c.410C>T	ENSMUSP00000088210.1:p.Thr137Ile	H-2-Db	10	2	10	QAISNPLLYI	QAISNPLLYT	NetMHC	29.98	1996.39	66.591	431	0.107	271.095	2118.552	7.815	1996.39	29.98	3906.9	51	2158.986864	491.1905468	2078.117023	633.3882463	M6_p20	0.7	1.142857143	TRUE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.113	431	0	0	NA	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.530681402	sgMsh2	cell line
chr2	87418564	87418564	CA	C	ENSMUST00000054974.1	NA	ENSMUSG00000043274	FS	Q/X	172	Olfr1123	ENSMUST00000054974.1:c.517del	ENSMUSP00000058786.1:p.Thr173HisfsTer35	H-2-Kb	8	32	0	ISHQYSNL	NA	NetMHC	3.34	NA	NA	542	0.089	3.438	NA	NA	NA	3.34	NA	5.1	NA	3.505419514	NA	3.370854446	M6_p20	-1.328571429	-1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.089	542	0	0	NA	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.417970308	sgMsh2	cell line
chr2	88402653	88402653	CT	C	ENSMUST00000213157.1	5	ENSMUSG00000075127	FS	S/X	94	Olfr1179	ENSMUST00000213157.1:c.280del	ENSMUSP00000151174.1:p.Ser94AlafsTer22	H-2-Kb	8	7	5	ISYTAAWL	ISYTSCMA	NetMHC	9	378.66	42.073	274	0.08	12.197	394.013	32.305	378.66	9	387.4	15	400.6268017	11.60753495	401.5503419	12.78615603	M6_p20	0.528571429	0.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.077	274	0	0	NA	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.361614761	sgMsh2	cell line
chr2	87252590	87252590	G	C	ENSMUST00000213513.1	5	ENSMUSG00000070856	missense	V/L	218	Olfr1115	ENSMUST00000213513.1:c.652G>C	ENSMUSP00000150221.1:p.Val218Leu	H-2-Kb	8	6	6	VVFIFLVL	VVFIFVVL	SMM	6.788	5.355	0.789	846	0.117	9.969	7.681	0.77	9.97	12.58	14.7	14.8	5.35475987	6.78797134	5.391877292	7.357664827	M6_p20	3.728571429	3.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.118	846	0	0	NA	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.55416288	sgMsh2	cell line
chr2	91606329	91606329	G	T	ENSMUST00000111338.9	1	ENSMUSG00000040549	missense	Q/H	1591	Ckap5	ENSMUST00000111338.9:c.4773G>T	ENSMUSP00000106970.3:p.Gln1591His	H-2-Kb	8	7	5	ATFMHLRL	ATFMQLRL	NetMHCpan	9.6	49.4	5.146	642	0.115	20.833	103.303	4.959	131.56	16.62	49.4	9.6	99.0238939	28.29697428	107.5820957	25.04609364	M6_p20	0.557142857	0.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.112	642	0	0	NA	2qE1	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.525985106	sgMsh2	cell line
chr2	85923475	85923475	T	C	ENSMUST00000217615.1	5	ENSMUSG00000042863	missense	V/A	69	Olfr1026	ENSMUST00000217615.1:c.206T>C	ENSMUSP00000150995.1:p.Val69Ala	H-2-Kb	8	6	6	SHLSFADL	SHLSFVDL	NetMHC	17.51	106.99	6.11	887	0.085	52.608	151.886	2.887	106.99	17.51	226.6	124.2	142.8038776	49.40148455	160.9681675	55.81359543	M6_p20	0.671428571	0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.088	887	0	0	NA	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.413274012	sgMsh2	cell line
chr2	86085539	86085539	TG	T	ENSMUST00000216886.1	5	ENSMUSG00000075205	FS	P/X	79	Olfr1037	ENSMUST00000216886.1:c.237del	ENSMUSP00000150319.1:p.Lys80SerfsTer26	H-2-Kb	8	9	4	VAPSFWRL	VAPKFLET	NetMHCpan	16.7	1284.3	76.904	96	0.115	23.918	2351.537	98.316	2294.61	21.67	1284.3	16.7	2882.305431	26.16616044	2408.463117	32.11737185	M6_p20	0.085714286	0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.121	96	0	0	NA	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.568251767	sgMsh2	cell line
chr2	88006632	88006632	T	G	ENSMUST00000099839.3	NA	ENSMUSG00000075141	missense	M/L	49	Olfr1160	ENSMUST00000099839.3:c.145A>C	ENSMUSP00000097427.3:p.Met49Leu	H-2-Kb	8	4	8	SIYSITLL	SIYSITLM	NetMHC	23.89	82.42	3.45	593	0.103	68.167	260.849	3.827	82.42	23.89	64.5	24.2	480.5515695	119.8781411	439.2785529	112.1346934	M6_p20	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.114	593	0	0	NA	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.535377698	sgMsh2	cell line
chr2	91606329	91606329	G	T	ENSMUST00000111338.9	1	ENSMUSG00000040549	missense	Q/H	1591	Ckap5	ENSMUST00000111338.9:c.4773G>T	ENSMUSP00000106970.3:p.Gln1591His	H-2-Kb	8	5	7	LIATFMHL	LIATFMQL	NetMHC	24.58	57.14	2.325	642	0.115	54.236	83.255	1.535	57.14	24.58	66.8	33.7	99.71029474	74.77217263	110.5961477	86.24620612	M6_p20	1.557142857	1.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.112	642	0	0	NA	2qE1	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.525985106	sgMsh2	cell line
chr2	87149894	87149894	G	T	ENSMUST00000216378.1	5	ENSMUSG00000075158	missense	L/M	256	Olfr1111	ENSMUST00000216378.1:c.766C>A	ENSMUSP00000150760.1:p.Leu256Met	H-2-Kb	8	8	4	GTLMFMYL	GTLLFMYL	NetMHC	38.64	47.16	1.22	228	0.11	66.312	54.097	0.816	47.16	38.64	125.6	93.6	60.35871704	79.56828547	47.83436356	53.05667136	M6_p20	1.742857143	1.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.125	228	0	0	NA	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.587036949	sgMsh2	cell line
chr2	89112332	89112332	A	G	ENSMUST00000217635.1	5	ENSMUSG00000075102	missense	F/S	60	Olfr1221	ENSMUST00000217635.1:c.179T>C	ENSMUSP00000149330.1:p.Phe60Ser	H-2-Kb	8	11	1	SFLVFLSL	FFLVFLSL	SMM	27.399	49.63	1.811	975	0.096	36.332	140.561	3.869	223.08	39.11	800.4	69.8	49.62951144	27.39933359	58.04168341	33.55366776	M6_p20	2.914285714	2.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.097	975	0	0	NA	2qE1	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.455540673	sgMsh2	cell line
chr2	85786374	85786374	T	C	ENSMUST00000215945.1	5	ENSMUSG00000033850	missense	F/L	288	Olfr1015	ENSMUST00000215945.1:c.862T>C	ENSMUSP00000148957.1:p.Phe288Leu	H-2-Kb	8	4	8	INPLLNPL	INPLLNPF	NetMHC	54.38	1179.23	21.685	259	0.147	137.353	1709.61	12.447	1179.23	54.38	1406.7	150.9	2012.51905	123.8055176	2012.51905	160.228586	M6_p20	0.171428571	0.271428571	FALSE	FALSE	FALSE	0	FALSE	2	Mutect2;Strelka2;MuSe;Vardict	4	0.156	259	0	0	NA	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.732622113	sgMsh2	cell line
chr2	86042133	86042133	G	A	ENSMUST00000218397.1	5	ENSMUSG00000045392	missense	A/T	273	Olfr1033	ENSMUST00000218397.1:c.817G>A	ENSMUSP00000151539.1:p.Ala273Thr	H-2-Kb	8	10	2	VTVFYTTV	VAVFYTTV	NetMHCpan	22.6	24.1	1.066	682	0.128	74.783	98.991	1.324	59.07	59.67	24.1	22.6	138.9120754	89.89592386	152.6651821	96.54727043	M6_p20	1.114285714	1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.131	682	0	0	NA	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.615214723	sgMsh2	cell line
chr2	89574963	89574963	TA	T	ENSMUST00000217402.1	5	ENSMUSG00000111456	FS	F/X	254	Olfr1245	ENSMUST00000217402.1:c.762del	ENSMUSP00000150791.1:p.Phe254LeufsTer27	H-2-Kb	8	25	0	VLLFFIQL	NA	SMMPMBEC	31.75	NA	NA	243	0.103	46.747	NA	NA	NA	80.51	NA	59	NA	34.49371732	NA	31.74972734	M6_p20	2.571428571	2.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.104	243	0	0	NA	2qE1	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.488414742	sgMsh2	cell line
chr2	89112332	89112332	A	G	ENSMUST00000217635.1	5	ENSMUSG00000075102	missense	F/S	60	Olfr1221	ENSMUST00000217635.1:c.179T>C	ENSMUSP00000149330.1:p.Phe60Ser	H-2-Kb	8	6	6	GSPMYSFL	GSPMYFFL	NetMHC	84.6	125.97	1.489	975	0.096	108.775	120.491	1.108	125.97	84.6	88.1	100.4	167.0090478	167.3940435	115.0111643	117.1493815	M6_p20	0.571428571	0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.097	975	0	0	NA	2qE1	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.455540673	sgMsh2	cell line
chr2	85799973	85799973	T	A	ENSMUST00000217410.2	3	ENSMUSG00000075209	missense	Q/L	99	Olfr1016	ENSMUST00000217410.2:c.296A>T	ENSMUSP00000149631.1:p.Gln99Leu	H-2-Kb	8	11	1	LFFFSAGL	QFFFSAGL	NetMHCpan	47.8	94.6	1.979	369	0.1	89.039	120.397	1.352	127.1	103.3	94.6	47.8	113.6946424	83.51029157	192.6371303	94.56708451	M6_p20	1.828571429	1.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.104	369	0	0	NA	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.488414742	sgMsh2	cell line
chr2	88423567	88423567	G	T	ENSMUST00000213190.1	5	ENSMUSG00000075125	missense	H/N	153	Olfr1181	ENSMUST00000213190.1:c.457C>A	ENSMUSP00000150939.1:p.His153Asn	H-2-Kb	8	9	3	VANSFPQV	VAHSFPQV	NetMHC	106.43	30.02	0.282	561	0.087	136.536	77.757	0.569	30.02	106.43	52.3	223.2	107.830098	129.9391436	103.2143305	143.1330745	M6_p20	-0.085714286	-0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.086	561	0	0	NA	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.403881421	sgMsh2	cell line
chr2	89112330	89112330	A	G	ENSMUST00000217635.1	5	ENSMUSG00000075102	missense	F/L	61	Olfr1221	ENSMUST00000217635.1:c.181T>C	ENSMUSP00000149330.1:p.Phe61Leu	H-2-Kb	8	5	7	GSPMYFLL	GSPMYFFL	NetMHCpan	74.2	88.1	1.187	977	0.112	138.779	120.491	0.868	125.97	112.84	88.1	74.2	167.0090478	251.6170116	115.0111643	164.7175978	M6_p20	1.228571429	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.117	977	0	0	NA	2qE1	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.549466584	sgMsh2	cell line
chr2	86483115	86483115	G	T	ENSMUST00000217292.2	5	ENSMUSG00000111772	missense	T/N	209	Olfr228	ENSMUST00000217292.2:c.626C>A	ENSMUSP00000149449.1:p.Thr209Asn	H-2-Kb	8	7	5	INLINSPL	INLITSPL	NetMHCpan	94.6	46.6	0.493	190	0.116	102.154	73.158	0.716	49.99	135.69	46.6	94.6	96.32521787	101.3304567	98.79614526	102.9769442	M6_p20	0.385714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.128	190	0	0	NA	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.601125836	sgMsh2	cell line
chr2	87252877	87252877	A	AG	ENSMUST00000213513.1	5	ENSMUSG00000070856	FS	-/X	313-314	Olfr1115	ENSMUST00000213513.1:c.943dup	ENSMUSP00000150221.1:p.Ala315GlyfsTer16	H-2-Kb	8	17	0	IIYQIVSI	NA	NetMHCpan	77.2	NA	NA	143	0.105	172.093	NA	NA	NA	157.23	NA	77.2	NA	258.6663888	NA	186.956255	M6_p20	1.728571429	1.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.091	143	0	0	NA	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.427362899	sgMsh2	cell line
chr2	87212904	87212904	A	T	ENSMUST00000215611.1	5	ENSMUSG00000070857	missense	K/I	4	Olfr1113	ENSMUST00000215611.1:c.11A>T	ENSMUSP00000150991.1:p.Lys4Ile	H-2-Kb	8	1	4	MQSIYVNL	MQSKYVNL	NetMHCpan	125	156.4	1.251	307	0.101	166.743	189.039	1.134	185.44	177.98	156.4	125	192.6371303	156.5813381	207.8452003	176.9049561	M6_p20	0.485714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.116	307	0	0	NA	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.544770289	sgMsh2	cell line
chr2	89574963	89574963	TA	T	ENSMUST00000217402.1	5	ENSMUSG00000111456	FS	F/X	254	Olfr1245	ENSMUST00000217402.1:c.762del	ENSMUSP00000150791.1:p.Phe254LeufsTer27	H-2-Kb	8	18	0	TTFPLINV	NA	SMM	156.942	NA	NA	243	0.103	192.715	NA	NA	NA	186.94	NA	206.6	NA	156.9422953	NA	198.4906254	M6_p20	1.357142857	1.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.104	243	0	0	NA	2qE1	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.488414742	sgMsh2	cell line
chr2	88070610	88070610	T	C	ENSMUST00000215268.1	5	ENSMUSG00000075137	missense	I/M	257	Olfr1163	ENSMUST00000215268.1:c.771A>G	ENSMUSP00000149399.1:p.Ile257Met	H-2-Kb	8	4	8	ITIFHGTM	ITIFHGTI	NetMHCpan	54.6	90.7	1.661	369	0.106	222.92	357.12	1.602	513.54	221.07	90.7	54.6	363.6972355	224.7708563	350.5419514	239.1883374	M6_p20	0.6	0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.105	369	0	0	NA	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.493111037	sgMsh2	cell line
chr2	88339985	88339985	A	G	ENSMUST00000213778.1	5	ENSMUSG00000050023	missense	K/R	140	Olfr1176	ENSMUST00000213778.1:c.419A>G	ENSMUSP00000149943.1:p.Lys140Arg	H-2-Kb	8	8	4	MSQRLCAL	MSQKLCAL	SMM	138.593	251.038	1.811	577	0.106	204.523	445.279	2.177	549.57	222.09	971.5	567.4	251.0383085	138.5925865	340.9887101	186.956255	M6_p20	0.442857143	0.442857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.103	577	0	0	NA	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.483718446	sgMsh2	cell line
chr2	85799973	85799973	T	A	ENSMUST00000217410.2	3	ENSMUSG00000075209	missense	Q/L	99	Olfr1016	ENSMUST00000217410.2:c.296A>T	ENSMUSP00000149631.1:p.Gln99Leu	H-2-Kb	8	9	3	VALFFFSA	VAQFFFSA	NetMHCpan	119	226.9	1.907	369	0.1	194.024	494.393	2.548	849.18	276.29	226.9	119	475.0507412	198.4906254	513.7360001	189.5570756	M6_p20	2.142857143	2.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.104	369	0	0	NA	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.488414742	sgMsh2	cell line
chr2	89609883	89609883	G	T	ENSMUST00000111532.3	5	ENSMUSG00000075081	missense	T/N	73	Olfr1247	ENSMUST00000111532.3:c.218C>A	ENSMUSP00000107157.1:p.Thr73Asn	H-2-Kb	8	7	5	AVYSNAIL	AVYSTAIL	NetMHCpan	181	103.3	0.571	893	0.101	222.81	159.389	0.715	111.41	306.87	103.3	181	218.1423563	229.4774419	207.3671696	216.1424152	M6_p20	1.242857143	1.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.111	893	0	0	NA	2qE1	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.521288811	sgMsh2	cell line
chr2	87418564	87418564	CA	C	ENSMUST00000054974.1	NA	ENSMUSG00000043274	FS	Q/X	172	Olfr1123	ENSMUST00000054974.1:c.517del	ENSMUSP00000058786.1:p.Thr173HisfsTer35	H-2-Kb	8	16	0	SLCLFVAL	NA	SMMPMBEC	74.087	NA	NA	542	0.089	189.772	NA	NA	NA	350.34	NA	292.7	NA	86.84403626	NA	74.08665723	M6_p20	3.242857143	3.242857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.089	542	0	0	NA	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.417970308	sgMsh2	cell line
chr2	86085539	86085539	TG	T	ENSMUST00000216886.1	5	ENSMUSG00000075205	FS	P/X	79	Olfr1037	ENSMUST00000216886.1:c.237del	ENSMUSP00000150319.1:p.Lys80SerfsTer26	H-2-Kb	8	12	1	SFWRLSSV	NA	NetMHCpan	321.7	NA	NA	96	0.115	355.839	NA	NA	NA	442.87	NA	321.7	NA	352.9717922	NA	358.7071224	M6_p20	0.542857143	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.121	96	0	0	NA	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.568251767	sgMsh2	cell line
chr2	86170996	86170996	C	T	ENSMUST00000215171.1	5	ENSMUSG00000075200	missense	A/T	274	Olfr1044	ENSMUST00000215171.1:c.820G>A	ENSMUSP00000150199.1:p.Ala274Thr	H-2-Kb	8	10	2	MTSVFYTV	MASVFYTV	NetMHCpan	238.2	211.8	0.889	393	0.135	362.779	490.422	1.352	456.35	458.08	211.8	238.2	524.4933667	339.4220093	610.5763804	386.1357391	M6_p20	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.137	393	0	0	NA	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.643392496	sgMsh2	cell line
chr2	91585795	91585795	A	G	ENSMUST00000111338.9	1	ENSMUSG00000040549	missense	H/R	1022	Ckap5	ENSMUST00000111338.9:c.3065A>G	ENSMUSP00000106970.3:p.His1022Arg	H-2-Kb	8	9	3	VPRLYSCL	VPHLYSCL	SMM	101.33	119.327	1.178	224	0.089	318.244	249.374	0.784	379.42	517.16	776.4	1216.5	119.3273511	101.3304567	114.219433	119.3273511	M6_p20	0.271428571	0.328571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.089	224	0	0	NA	2qE1	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.417970308	sgMsh2	cell line
chr2	89112330	89112330	A	G	ENSMUST00000217635.1	5	ENSMUSG00000075102	missense	F/L	61	Olfr1221	ENSMUST00000217635.1:c.181T>C	ENSMUSP00000149330.1:p.Phe61Leu	H-2-Kb	8	10	2	FLLVFLSL	FFLVFLSL	SMMPMBEC	129.342	58.042	0.449	977	0.112	335.362	140.561	0.419	223.08	524.93	800.4	653.9	49.62951144	145.794117	58.04168341	129.3421274	M6_p20	3.057142857	3.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.117	977	0	0	NA	2qE1	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.549466584	sgMsh2	cell line
chr2	88070610	88070610	T	C	ENSMUST00000215268.1	5	ENSMUSG00000075137	missense	I/M	257	Olfr1163	ENSMUST00000215268.1:c.771A>G	ENSMUSP00000149399.1:p.Ile257Met	H-2-Kb	8	5	7	TIFHGTML	TIFHGTIL	SMMPMBEC	234.823	688.24	2.931	369	0.106	278.821	751.228	2.694	1955.18	540.11	524	244.5	814.2166892	313.1410475	688.2401428	234.8226582	M6_p20	1.242857143	1.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.105	369	0	0	NA	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.493111037	sgMsh2	cell line
chr2	86170996	86170996	C	T	ENSMUST00000215171.1	5	ENSMUSG00000075200	missense	A/T	274	Olfr1044	ENSMUST00000215171.1:c.820G>A	ENSMUSP00000150199.1:p.Ala274Thr	H-2-Kb	8	11	1	TSVFYTVI	ASVFYTVI	NetMHCpan	83.2	92.1	1.107	393	0.135	383.911	486.485	1.267	737.68	618.3	92.1	83.2	524.4933667	415.6616909	448.476819	352.1599796	M6_p20	1.842857143	1.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.137	393	0	0	NA	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.643392496	sgMsh2	cell line
chr2	89112330	89112330	A	G	ENSMUST00000217635.1	5	ENSMUSG00000075102	missense	F/L	61	Olfr1221	ENSMUST00000217635.1:c.181T>C	ENSMUSP00000149330.1:p.Phe61Leu	H-2-Kb	8	8	4	MYFLLVFL	MYFFLVFL	SMM	163.584	183.544	1.122	977	0.112	438.111	328.176	0.749	702.49	706.5	452.3	748.7	183.5439188	163.5836898	204.0515979	169.7227266	M6_p20	2.842857143	2.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.117	977	0	0	NA	2qE1	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.549466584	sgMsh2	cell line
chr2	89574963	89574963	TA	T	ENSMUST00000217402.1	5	ENSMUSG00000111456	FS	F/X	254	Olfr1245	ENSMUST00000217402.1:c.762del	ENSMUSP00000150791.1:p.Phe254LeufsTer27	H-2-Kb	8	27	0	LFFIQLSL	NA	SMM	298.36	NA	NA	243	0.103	416.803	NA	NA	NA	715.85	NA	406.3	NA	298.3595888	NA	427.3069928	M6_p20	1.914285714	1.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.104	243	0	0	NA	2qE1	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.488414742	sgMsh2	cell line
chr2	87833436	87833436	A	G	ENSMUST00000215230.1	5	ENSMUSG00000061875	missense	I/M	132	Olfr1148	ENSMUST00000215230.1:c.396A>G	ENSMUSP00000149438.1:p.Ile132Met	H-2-Kb	9	3	9	MSYDRYVAM	MSYDRYVAI	NetMHCpan	7.7	9.3	1.208	660	0.108	12.844	21.056	1.639	15.55	10.12	9.3	7.7	32.36756285	17.14391481	26.56134116	15.56861575	M6_p20	-0.385714286	-0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.116	660	0	0	NA	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.544770289	sgMsh2	cell line
chr2	88929956	88929956	C	T	ENSMUST00000215205.1	5	ENSMUSG00000075112	missense	D/N	120	Olfr1211	ENSMUST00000215205.1:c.358G>A	ENSMUSP00000150571.1:p.Asp120Asn	H-2-Kb	9	8	4	MAYNRYVAI	MAYDRYVAI	NetMHCpan	10.6	14.4	1.358	640	0.066	22.873	30.259	1.323	27.08	15.46	14.4	10.6	39.27443988	37.76678362	33.43874735	30.28656361	M6_p20	-0.014285714	-0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.068	640	0	0	NA	2qE1	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.3193481	sgMsh2	cell line
chr2	87418564	87418564	CA	C	ENSMUST00000054974.1	NA	ENSMUSG00000043274	FS	Q/X	172	Olfr1123	ENSMUST00000054974.1:c.517del	ENSMUSP00000058786.1:p.Thr173HisfsTer35	H-2-Kb	9	32	0	ISHQYSNLL	NA	NetMHC	24.78	NA	NA	542	0.089	68.39	NA	NA	NA	24.78	NA	37.9	NA	98.88035114	NA	125.9650316	M6_p20	-0.671428571	-0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.089	542	0	0	NA	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.417970308	sgMsh2	cell line
chr2	85799973	85799973	T	A	ENSMUST00000217410.2	3	ENSMUSG00000075209	missense	Q/L	99	Olfr1016	ENSMUST00000217410.2:c.296A>T	ENSMUSP00000149631.1:p.Gln99Leu	H-2-Kb	9	10	2	ALFFFSAGL	AQFFFSAGL	NetMHCpan	19.9	13.5	0.678	369	0.1	88.676	58.879	0.664	12.74	27.69	13.5	19.9	104.2581466	149.6614677	137.1671136	173.0812408	M6_p20	1.828571429	2.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.104	369	0	0	NA	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.488414742	sgMsh2	cell line
chr2	89112332	89112332	A	G	ENSMUST00000217635.1	5	ENSMUSG00000075102	missense	F/S	60	Olfr1221	ENSMUST00000217635.1:c.179T>C	ENSMUSP00000149330.1:p.Phe60Ser	H-2-Kb	9	11	1	SFLVFLSLL	FFLVFLSLL	NetMHC	33.6	120.88	3.598	975	0.096	86.997	149.201	1.715	120.88	33.6	1133	105.9	104.9808295	68.09418088	177.521108	120.5729815	M6_p20	3.057142857	3.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.097	975	0	0	NA	2qE1	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.455540673	sgMsh2	cell line
chr2	87418564	87418564	CA	C	ENSMUST00000054974.1	NA	ENSMUSG00000043274	FS	Q/X	172	Olfr1123	ENSMUST00000054974.1:c.517del	ENSMUSP00000058786.1:p.Thr173HisfsTer35	H-2-Kb	9	31	0	VISHQYSNL	NA	NetMHC	46.03	NA	NA	542	0.089	153.473	NA	NA	NA	46.03	NA	113.7	NA	193.2457716	NA	213.4273146	M6_p20	-1.328571429	-0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.089	542	0	0	NA	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.417970308	sgMsh2	cell line
chr2	87252590	87252590	G	C	ENSMUST00000213513.1	5	ENSMUSG00000070856	missense	V/L	218	Olfr1115	ENSMUST00000213513.1:c.652G>C	ENSMUSP00000150221.1:p.Val218Leu	H-2-Kb	9	6	6	VVFIFLVLI	VVFIFVVLI	SMM	37.767	73.639	1.95	846	0.117	47.234	71.591	1.516	63.58	53.8	235.6	218.1	73.63935909	37.76678362	69.54245209	40.66773641	M6_p20	3.771428571	3.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.118	846	0	0	NA	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.55416288	sgMsh2	cell line
chr2	85923475	85923475	T	C	ENSMUST00000217615.1	5	ENSMUSG00000042863	missense	V/A	69	Olfr1026	ENSMUST00000217615.1:c.206T>C	ENSMUSP00000150995.1:p.Val69Ala	H-2-Kb	9	5	7	LSHLSFADL	LSHLSFVDL	NetMHC	57.08	299.86	5.253	887	0.085	205.392	360.403	1.755	299.86	57.08	324.3	118.2	520.1277201	360.6699835	396.5062159	292.583614	M6_p20	0.671428571	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.088	887	0	0	NA	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.413274012	sgMsh2	cell line
chr2	89112332	89112332	A	G	ENSMUST00000217635.1	5	ENSMUSG00000075102	missense	F/S	60	Olfr1221	ENSMUST00000217635.1:c.179T>C	ENSMUSP00000149330.1:p.Phe60Ser	H-2-Kb	9	10	2	YSFLVFLSL	YFFLVFLSL	NetMHCpan	60.7	1055.3	17.386	975	0.096	104.309	382.366	3.666	470.12	63.37	1055.3	60.7	268.6024688	145.2479461	294.6117067	146.6391721	M6_p20	2.914285714	2.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.097	975	0	0	NA	2qE1	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.455540673	sgMsh2	cell line
chr2	86042133	86042133	G	A	ENSMUST00000218397.1	5	ENSMUSG00000045392	missense	A/T	273	Olfr1033	ENSMUST00000218397.1:c.817G>A	ENSMUSP00000151539.1:p.Ala273Thr	H-2-Kb	9	9	3	MVTVFYTTV	MVAVFYTTV	NetMHC	66.55	59.05	0.887	682	0.128	134.859	97.929	0.726	59.05	66.55	49.9	70.6	136.8075294	199.1177609	205.7074402	273.0549161	M6_p20	1.114285714	1.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.131	682	0	0	NA	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.615214723	sgMsh2	cell line
chr2	85799973	85799973	T	A	ENSMUST00000217410.2	3	ENSMUSG00000075209	missense	Q/L	99	Olfr1016	ENSMUST00000217410.2:c.296A>T	ENSMUSP00000149631.1:p.Gln99Leu	H-2-Kb	9	3	9	ISFASCVAL	ISFASCVAQ	NetMHCpan	41.2	6248.9	151.672	369	0.1	118.535	2718.814	22.937	4304.94	70.25	6248.9	41.2	1132.687219	216.825322	783.8807509	166.8207233	M6_p20	2.3	2.3	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.104	369	0	0	NA	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.488414742	sgMsh2	cell line
chr2	87645506	87645506	A	C	ENSMUST00000217368.1	5	ENSMUSG00000075155	missense	C/G	206	Olfr1133	ENSMUST00000217368.1:c.616T>G	ENSMUSP00000149460.1:p.Cys206Gly	H-2-Kb	9	4	8	VMFTLIGGV	VMFTLIGCV	NetMHC	79.18	384.39	4.855	1058	0.117	142.014	310.521	2.187	384.39	79.18	387.5	139.4	236.6519024	145.2479461	186.7454375	144.6272072	M6_p20	1.971428571	2.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.116	1058	0	0	NA	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.544770289	sgMsh2	cell line
chr2	89575481	89575481	C	T	ENSMUST00000217402.1	5	ENSMUSG00000111456	missense	D/N	82	Olfr1245	ENSMUST00000217402.1:c.244G>A	ENSMUSP00000150791.1:p.Asp82Asn	H-2-Kb	9	4	8	ISPKLIVNL	ISPKLIVDL	NetMHCpan	63.9	452.5	7.081	404	0.067	298.903	819.774	2.743	764.06	82.28	452.5	63.9	1267.972983	602.7122243	875.4876014	515.5253194	M6_p20	1.042857143	1.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.072	404	0	0	NA	2qE1	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.338133283	sgMsh2	cell line
chr2	91606329	91606329	G	T	ENSMUST00000111338.9	1	ENSMUSG00000040549	missense	Q/H	1591	Ckap5	ENSMUST00000111338.9:c.4773G>T	ENSMUSP00000106970.3:p.Gln1591His	H-2-Kb	9	7	5	ATFMHLRLI	ATFMQLRLI	NetMHCpan	83	452.8	5.455	642	0.115	187.728	640.476	3.412	370.21	103.03	452.8	83	828.1518951	283.863792	897.9455448	272.4269072	M6_p20	1.3	1.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.112	642	0	0	NA	2qE1	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.525985106	sgMsh2	cell line
chr2	89574963	89574963	TA	T	ENSMUST00000217402.1	5	ENSMUSG00000111456	FS	F/X	254	Olfr1245	ENSMUST00000217402.1:c.762del	ENSMUSP00000150791.1:p.Phe254LeufsTer27	H-2-Kb	9	24	0	NVLLFFIQL	NA	NetMHC	106.64	NA	NA	243	0.103	159.654	NA	NA	NA	106.64	NA	185	NA	159.628341	NA	159.6798074	M6_p20	2.571428571	2.628571429	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Vardict	2	0.104	243	0	0	NA	2qE1	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.488414742	sgMsh2	cell line
chr2	86131294	86131294	T	C	ENSMUST00000216566.2	5	ENSMUSG00000075204	missense	Y/C	123	Olfr1039	ENSMUST00000216566.2:c.368A>G	ENSMUSP00000149830.1:p.Tyr123Cys	H-2-Kb	9	6	6	MAYDRCVAI	MAYDRYVAI	NetMHCpan	132.7	14.4	0.109	847	0.109	145.305	30.259	0.208	27.08	145.65	14.4	132.7	39.27443988	184.1238299	33.43874735	144.9606074	M6_p20	0.528571429	0.528571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.109	847	0	0	NA	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.51189622	sgMsh2	cell line
chr2	88402653	88402653	CT	C	ENSMUST00000213157.1	5	ENSMUSG00000075127	FS	S/X	94	Olfr1179	ENSMUST00000213157.1:c.280del	ENSMUSP00000151174.1:p.Ser94AlafsTer22	H-2-Kb	9	14	0	LSFLPCISL	NA	NetMHC	146.85	NA	NA	274	0.08	216.149	NA	NA	NA	146.85	NA	174.6	NA	257.6973782	NA	291.9106903	M6_p20	2.142857143	2.142857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.077	274	0	0	NA	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.361614761	sgMsh2	cell line
chr2	87149894	87149894	G	T	ENSMUST00000216378.1	5	ENSMUSG00000075158	missense	L/M	256	Olfr1111	ENSMUST00000216378.1:c.766C>A	ENSMUSP00000150760.1:p.Leu256Met	H-2-Kb	9	3	9	VTLFYGTLM	VTLFYGTLL	NetMHCpan	69.1	32.2	0.466	228	0.11	171.989	108.473	0.631	78.51	156.37	32.2	69.1	156.7147954	206.1151905	138.4363053	187.6074152	M6_p20	1.414285714	1.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.125	228	0	0	NA	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.587036949	sgMsh2	cell line
chr2	91284247	91284247	A	G	ENSMUST00000102594.10	1	ENSMUSG00000040591	missense	F/L	147	1110051M20Rik	ENSMUST00000102594.10:c.439T>C	ENSMUSP00000099654.4:p.Phe147Leu	H-2-Kb	9	8	4	QIQLYYSEF	QIQFYYSEF	SMM	177.873	191.034	1.074	286	0.133	233.567	248.13	1.062	224.46	181.21	352.1	442.3	191.0337056	177.8729877	271.8003427	285.9235978	M6_p20	-0.542857143	-0.3	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.137	286	0	0	NA	2qE1	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.643392496	sgMsh2	cell line
chr2	87149894	87149894	G	T	ENSMUST00000216378.1	5	ENSMUSG00000075158	missense	L/M	256	Olfr1111	ENSMUST00000216378.1:c.766C>A	ENSMUSP00000150760.1:p.Leu256Met	H-2-Kb	9	7	5	YGTLMFMYL	YGTLLFMYL	NetMHC	190.96	357.16	1.87	228	0.11	445.848	684.384	1.535	357.16	190.96	375.4	251.8	993.367621	639.8968908	1109.813491	782.0778752	M6_p20	1.742857143	1.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.125	228	0	0	NA	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.587036949	sgMsh2	cell line
chr2	87418564	87418564	CA	C	ENSMUST00000054974.1	NA	ENSMUSG00000043274	FS	Q/X	172	Olfr1123	ENSMUST00000054974.1:c.517del	ENSMUSP00000058786.1:p.Thr173HisfsTer35	H-2-Kb	9	15	0	FSLCLFVAL	NA	SMMPMBEC	192.42	NA	NA	542	0.089	206.906	NA	NA	NA	193.97	NA	286.4	NA	219.8416627	NA	192.4199068	M6_p20	3.242857143	3.242857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.089	542	0	0	NA	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.417970308	sgMsh2	cell line
chr2	88070610	88070610	T	C	ENSMUST00000215268.1	5	ENSMUSG00000075137	missense	I/M	257	Olfr1163	ENSMUST00000215268.1:c.771A>G	ENSMUSP00000149399.1:p.Ile257Met	H-2-Kb	9	4	8	ITIFHGTML	ITIFHGTIL	NetMHCpan	99.3	211.2	2.127	369	0.106	218.84	396.307	1.811	552.76	196.55	211.2	99.3	448.8590645	348.4255546	343.7557727	241.1293081	M6_p20	1.242857143	1.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.105	369	0	0	NA	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.493111037	sgMsh2	cell line
chr2	86923173	86923173	A	G	ENSMUST00000111574.2	3	ENSMUSG00000075169	missense	Y/H	120	Olfr1098	ENSMUST00000111574.2:c.358T>C	ENSMUSP00000107200.1:p.Tyr120His	H-2-Kb	9	9	3	MAHDRYVAI	MAYDRYVAI	SMMPMBEC	181.656	33.439	0.184	567	0.102	201.4	30.259	0.15	27.08	200.2	14.4	202.6	39.27443988	223.4138023	33.43874735	181.6561058	M6_p20	-0.285714286	-0.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.109	567	0	0	NA	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.51189622	sgMsh2	cell line
chr2	91284247	91284247	A	G	ENSMUST00000102594.10	1	ENSMUSG00000040591	missense	F/L	147	1110051M20Rik	ENSMUST00000102594.10:c.439T>C	ENSMUSP00000099654.4:p.Phe147Leu	H-2-Kb	9	9	3	IQLYYSEFL	IQFYYSEFL	NetMHCpan	192.4	29.6	0.154	286	0.133	382.31	125.453	0.328	51.33	204.72	29.6	192.4	199.5767748	559.8993973	219.4067579	608.4851727	M6_p20	0.5	0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.137	286	0	0	NA	2qE1	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.643392496	sgMsh2	cell line
chr2	87418564	87418564	CA	C	ENSMUST00000054974.1	NA	ENSMUSG00000043274	FS	Q/X	172	Olfr1123	ENSMUST00000054974.1:c.517del	ENSMUSP00000058786.1:p.Thr173HisfsTer35	H-2-Kb	9	37	0	SNLLVVTHL	NA	NetMHCpan	181.8	NA	NA	542	0.089	482.157	NA	NA	NA	214.23	NA	181.8	NA	750.0841699	NA	755.5270188	M6_p20	2.271428571	2.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.089	542	0	0	NA	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.417970308	sgMsh2	cell line
chr2	87149894	87149894	G	T	ENSMUST00000216378.1	5	ENSMUSG00000075158	missense	L/M	256	Olfr1111	ENSMUST00000216378.1:c.766C>A	ENSMUSP00000150760.1:p.Leu256Met	H-2-Kb	9	10	2	LMFMYLRPT	LLFMYLRPT	SMMPMBEC	139.717	836.084	5.984	228	0.11	164.772	997.578	6.054	1583.65	214.37	740.9	177.8	1159.070894	151.7434661	836.0841685	139.7172407	M6_p20	0.057142857	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.125	228	0	0	NA	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.587036949	sgMsh2	cell line
chr2	89112332	89112332	A	G	ENSMUST00000217635.1	5	ENSMUSG00000075102	missense	F/S	60	Olfr1221	ENSMUST00000217635.1:c.179T>C	ENSMUSP00000149330.1:p.Phe60Ser	H-2-Kb	9	8	4	PMYSFLVFL	PMYFFLVFL	SMM	29.384	32.219	1.096	975	0.096	135.439	202.29	1.494	360.5	217.39	910.3	281.5	32.21884741	29.38393807	44.08085403	53.4872168	M6_p20	2.185714286	2.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.097	975	0	0	NA	2qE1	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.455540673	sgMsh2	cell line
chr2	88896799	88896799	T	C	ENSMUST00000214297.1	5	ENSMUSG00000075114	missense	K/R	266	Olfr1208	ENSMUST00000214297.1:c.797A>G	ENSMUSP00000149695.1:p.Lys266Arg	H-2-Kb	9	11	1	RVFALFYTM	KVFALFYTM	NetMHCpan	58.6	48.3	0.824	634	0.118	255.728	205.981	0.805	183.87	220.98	48.3	58.6	228.091972	290.4758291	294.6117067	366.6485738	M6_p20	1.585714286	1.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.116	634	0	0	NA	2qE1	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.544770289	sgMsh2	cell line
chr2	89112330	89112330	A	G	ENSMUST00000217635.1	5	ENSMUSG00000075102	missense	F/L	61	Olfr1221	ENSMUST00000217635.1:c.181T>C	ENSMUSP00000149330.1:p.Phe61Leu	H-2-Kb	9	10	2	FLLVFLSLL	FFLVFLSLL	NetMHC	229.34	120.88	0.527	977	0.112	325.814	149.201	0.458	120.88	229.34	1133	1179.6	104.9808295	272.9669078	177.521108	378.6604965	M6_p20	3.057142857	3.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.117	977	0	0	NA	2qE1	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.549466584	sgMsh2	cell line
chr2	89112330	89112330	A	G	ENSMUST00000217635.1	5	ENSMUSG00000075102	missense	F/L	61	Olfr1221	ENSMUST00000217635.1:c.181T>C	ENSMUSP00000149330.1:p.Phe61Leu	H-2-Kb	9	5	7	GSPMYFLLV	GSPMYFFLV	NetMHCpan	143	135.5	0.948	977	0.112	298.693	265.97	0.89	211.97	244	135.5	143	319.9705442	357.3633412	346.9365057	353.3865369	M6_p20	1.942857143	1.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.117	977	0	0	NA	2qE1	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.549466584	sgMsh2	cell line
chr2	86181246	86181246	C	CA	ENSMUST00000215138.2	5	ENSMUSG00000075199	FS	L/FX	288	Olfr52	ENSMUST00000215138.2:c.863dup	ENSMUSP00000150060.1:p.Leu288PhefsTer21	H-2-Kb	9	3	9	VIIPMLNPF	VIIPMLNPL	SMM	158.895	94.213	0.593	191	0.131	244.521	83.706	0.342	56.36	265.04	73.2	301.4	94.21281926	158.8949154	129.4941055	224.0010221	M6_p20	0.9	1.971428571	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Vardict	2	0.131	191	0	0	NA	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.615214723	sgMsh2	cell line
chr2	91606329	91606329	G	T	ENSMUST00000111338.9	1	ENSMUSG00000040549	missense	Q/H	1591	Ckap5	ENSMUST00000111338.9:c.4773G>T	ENSMUSP00000106970.3:p.Gln1591His	H-2-Kb	9	6	6	IATFMHLRL	IATFMQLRL	NetMHCpan	115.5	368.7	3.192	642	0.115	262.767	458.862	1.746	535.38	267.16	368.7	115.5	460.3731641	298.6138865	457.3513865	258.3747087	M6_p20	0.557142857	1.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.112	642	0	0	NA	2qE1	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.525985106	sgMsh2	cell line
chr2	91284247	91284247	A	G	ENSMUST00000102594.10	1	ENSMUSG00000040591	missense	F/L	147	1110051M20Rik	ENSMUST00000102594.10:c.439T>C	ENSMUSP00000099654.4:p.Phe147Leu	H-2-Kb	9	3	9	FLFAFQIQL	FLFAFQIQF	NetMHCpan	235.9	1129.7	4.789	286	0.133	317.333	742.822	2.341	735.56	268.86	1129.7	235.9	750.0841699	444.7438999	632.7760017	365.8053055	M6_p20	1.242857143	2.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.137	286	0	0	NA	2qE1	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.643392496	sgMsh2	cell line
chr2	91585795	91585795	A	G	ENSMUST00000111338.9	1	ENSMUSG00000040549	missense	H/R	1022	Ckap5	ENSMUST00000111338.9:c.3065A>G	ENSMUSP00000106970.3:p.His1022Arg	H-2-Kb	9	8	4	CVPRLYSCL	CVPHLYSCL	NetMHC	292.36	535.28	1.831	224	0.089	399.682	540.048	1.351	535.28	292.36	573.1	335.8	413.1521337	463.5643185	544.816184	638.631006	M6_p20	0.271428571	0.328571429	TRUE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.089	224	0	0	NA	2qE1	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.417970308	sgMsh2	cell line
chr2	85799973	85799973	T	A	ENSMUST00000217410.2	3	ENSMUSG00000075209	missense	Q/L	99	Olfr1016	ENSMUST00000217410.2:c.296A>T	ENSMUSP00000149631.1:p.Gln99Leu	H-2-Kb	9	9	3	VALFFFSAG	VAQFFFSAG	SMMPMBEC	123.381	326.024	2.642	369	0.1	160.728	366.586	2.281	661.85	317.36	395.8	189.9	337.3727491	131.5558	326.0243217	123.381487	M6_p20	1.828571429	2.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.104	369	0	0	NA	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.488414742	sgMsh2	cell line
chr2	88959354	88959354	C	T	ENSMUST00000215781.1	5	ENSMUSG00000048226	missense	A/V	296	Olfr1212	ENSMUST00000215781.1:c.887C>T	ENSMUSP00000149781.1:p.Ala296Val	H-2-Kb	9	11	1	VIRKMWNRF	AIRKMWNRF	SMM	157.076	466.778	2.972	149	0.094	259.694	769.516	2.963	1005.39	326.08	2454.1	883.5	466.7775928	157.0760603	533.6419961	193.3080768	M6_p20	-1.8	-0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.113	149	0	0	NA	2qE1	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.530681402	sgMsh2	cell line
chr2	88070610	88070610	T	C	ENSMUST00000215268.1	5	ENSMUSG00000075137	missense	I/M	257	Olfr1163	ENSMUST00000215268.1:c.771A>G	ENSMUSP00000149399.1:p.Ile257Met	H-2-Kb	9	3	9	AITIFHGTM	AITIFHGTI	NetMHCpan	325.5	543	1.668	369	0.106	486.627	930.513	1.912	796.27	349.16	543	325.5	1330.791444	704.8715793	1064.755765	624.0939895	M6_p20	0.6	1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.105	369	0	0	NA	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.493111037	sgMsh2	cell line
chr2	87418564	87418564	CA	C	ENSMUST00000054974.1	NA	ENSMUSG00000043274	FS	Q/X	172	Olfr1123	ENSMUST00000054974.1:c.517del	ENSMUSP00000058786.1:p.Thr173HisfsTer35	H-2-Kb	9	7	6	VVIGQHTRF	VVIGQTYQI	SMM	355.721	1040.184	2.924	542	0.089	366.693	1316.506	3.59	1587.69	376.73	2075.4	782.4	1040.183595	355.7214058	1045.321782	356.6563823	M6_p20	-0.714285714	0.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.089	542	0	0	NA	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.417970308	sgMsh2	cell line
chr2	90149482	90149482	A	G	ENSMUST00000215578.1	5	ENSMUSG00000075065	missense	Y/H	175	Olfr1270	ENSMUST00000215578.1:c.523T>C	ENSMUSP00000151124.1:p.Tyr175His	H-2-Kb	9	7	5	VIDHHFCDL	VIDHYFCDL	SMMPMBEC	216.396	172.286	0.796	480	0.129	328.55	236.774	0.721	255.22	384.76	345.2	850.8	218.3282833	272.3391013	172.2860048	216.3963843	M6_p20	-0.614285714	0.585714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.134	480	0	0	NA	2qE1	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.62930361	sgMsh2	cell line
chr2	90139121	90139121	A	C	ENSMUST00000215153.2	2	ENSMUSG00000075066	missense	V/G	6	Olfr32	ENSMUST00000215153.2:c.17T>G	ENSMUSP00000150246.1:p.Val6Gly	H-2-Kb	9	1	6	MAFVNGTEL	MAFVNVTEL	NetMHCpan	300.4	116.7	0.388	624	0.082	451.798	244.575	0.541	170.65	408.02	116.7	300.4	318.5004131	495.5756965	366.6485738	566.5653364	M6_p20	0.385714286	0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.083	624	0	0	NA	2qE1	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.389792534	sgMsh2	cell line
chr2	88392008	88392008	T	A	ENSMUST00000214040.2	5	ENSMUSG00000056995	missense	F/I	254	Olfr1178	ENSMUST00000214040.2:c.760T>A	ENSMUSP00000150036.1:p.Phe254Ile	H-2-Kb	9	11	1	IIYIRPATT	FIYIRPATT	SMMPMBEC	220.419	494.595	2.244	359	0.103	362.375	1243.044	3.43	1918.4	442.19	1950.8	534.8	567.6883738	282.5595563	494.595317	220.4194935	M6_p20	-0.357142857	1.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.107	359	0	0	NA	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.502503628	sgMsh2	cell line
chr2	85868829	85868829	C	CA	ENSMUST00000054736.3	NA	ENSMUSG00000057761	FS	P/PX	79	Olfr1022	ENSMUST00000054736.3:c.239dup	ENSMUSP00000059312.3:p.Asn80LysfsTer32	H-2-Kb	9	28	0	WMLHTVSPL	NA	SMM	450.931	NA	NA	1170	0.097	489.579	NA	NA	NA	460.06	NA	635.3	NA	450.9309038	NA	519.0987702	M6_p20	0.785714286	0.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.094	1170	0	0	NA	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.441451786	sgMsh2	cell line
chr2	85786374	85786374	T	C	ENSMUST00000215945.1	5	ENSMUSG00000033850	missense	F/L	288	Olfr1015	ENSMUST00000215945.1:c.862T>C	ENSMUSP00000148957.1:p.Phe288Leu	H-2-Kb	9	3	9	IINPLLNPL	IINPLLNPF	NetMHCpan	438.7	1653.4	3.769	259	0.147	476.268	1172.73	2.462	1420.23	481.44	1653.4	438.7	794.5294511	471.0966327	925.2306262	534.872168	M6_p20	0.171428571	1.142857143	FALSE	FALSE	FALSE	0	FALSE	2	Mutect2;Strelka2;MuSe;Vardict	4	0.156	259	0	0	NA	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.732622113	sgMsh2	cell line
chr2	87656102	87656102	A	AT	ENSMUST00000135875.3	5	ENSMUSG00000111747	FS	M/NX	273	Olfr1134	ENSMUST00000135875.3:c.817dup	ENSMUSP00000150837.1:p.Met273AsnfsTer23	H-2-Kb	9	20	0	DSYVKPTYL	NA	SMM	254.748	NA	NA	348	0.279	435.96	NA	NA	NA	486.22	NA	545.4	NA	254.7475407	NA	385.7003207	M6_p20	-0.114285714	-0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.252	348	0	0	NA	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	2	1	sgMsh2	cell line
chr2	86170996	86170996	C	T	ENSMUST00000215171.1	5	ENSMUSG00000075200	missense	A/T	274	Olfr1044	ENSMUST00000215171.1:c.820G>A	ENSMUSP00000150199.1:p.Ala274Thr	H-2-Kb	9	10	2	MTSVFYTVI	MASVFYTVI	NetMHCpan	104.1	93.9	0.902	393	0.135	488.601	366.17	0.749	403.78	514.62	93.9	104.1	367.3753391	505.9527957	364.9639766	471.2485208	M6_p20	1.842857143	1.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.137	393	0	0	NA	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.643392496	sgMsh2	cell line
chr2	88402653	88402653	CT	C	ENSMUST00000213157.1	5	ENSMUSG00000075127	FS	S/X	94	Olfr1179	ENSMUST00000213157.1:c.280del	ENSMUSP00000151174.1:p.Ser94AlafsTer22	H-2-Kb	9	12	0	AWLSFLPCI	NA	SMM	219.842	NA	NA	274	0.08	459.983	NA	NA	NA	571.32	NA	546.5	NA	219.8416627	NA	373.4650797	M6_p20	2.142857143	2.142857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.077	274	0	0	NA	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.361614761	sgMsh2	cell line
chr2	86085539	86085539	TG	T	ENSMUST00000216886.1	5	ENSMUSG00000075205	FS	P/X	79	Olfr1037	ENSMUST00000216886.1:c.237del	ENSMUSP00000150319.1:p.Lys80SerfsTer26	H-2-Kb	9	11	2	PSFWRLSSV	NA	SMM	157.438	NA	NA	96	0.115	356.241	NA	NA	NA	572.63	NA	539.4	NA	157.438158	NA	173.0812408	M6_p20	0.542857143	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.121	96	0	0	NA	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.568251767	sgMsh2	cell line
chr2	88340206	88340206	A	G	ENSMUST00000213778.1	5	ENSMUSG00000050023	missense	I/V	214	Olfr1176	ENSMUST00000213778.1:c.640A>G	ENSMUSP00000149943.1:p.Ile214Val	H-2-Kb	9	11	1	VIIVSYVVI	IIIVSYVVI	SMMPMBEC	241.685	320.074	1.324	716	0.108	368.298	440.96	1.197	841.42	664.37	479.1	463	402.8190492	273.5961615	320.0737072	241.6851686	M6_p20	2.785714286	2.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.108	716	0	0	NA	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.507199924	sgMsh2	cell line
chr2	86042133	86042133	G	A	ENSMUST00000218397.1	5	ENSMUSG00000045392	missense	A/T	273	Olfr1033	ENSMUST00000218397.1:c.817G>A	ENSMUSP00000151539.1:p.Ala273Thr	H-2-Kb	9	10	2	VTVFYTTVI	VAVFYTTVI	NetMHCpan	210	167.6	0.798	682	0.128	482.177	359.921	0.746	537.74	716.72	167.6	210	405.6112574	558.6116644	314.2317036	405.7420321	M6_p20	1.857142857	1.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.131	682	0	0	NA	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.615214723	sgMsh2	cell line
chr2	121336461	121336461	T	G	ENSMUST00000052029.9	1	ENSMUSG00000033526	missense	S/R	870	Ppip5k1	ENSMUST00000052029.9:c.2608A>C	ENSMUSP00000057632.3:p.Ser870Arg	H-2-Db	9	11	1	RAISELNYM	SAISELNYM	NetMHCpan	138.7	63.8	0.46	158	0.095	375.561	214.339	0.571	146.47	381.66	63.8	138.7	340.1104688	520.7388744	282.2084413	369.4621898	M6_p20	0.157142857	0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.102	158	0	0	NA	2qE5	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.479022151	sgMsh2	cell line
chr2	104645002	104645002	G	T	ENSMUST00000028599.7	1	ENSMUSG00000027176	missense	K/N	94	Cstf3	ENSMUST00000028599.7:c.282G>T	ENSMUSP00000028599.7:p.Lys94Asn	H-2-Db	9	7	5	RCLMNVLHI	RCLMKVLHI	NetMHCpan	378.6	12097.2	31.952	161	0.13	476.602	19084.164	40.042	19821.12	406.73	12097.2	378.6	21213.87473	652.5593249	18347.20865	546.4746241	M6_p20	1.642857143	1.642857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.144	161	0	0	NA	2qE2	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.676266565	sgMsh2	cell line
chr2	118790755	118790755	A	C	ENSMUST00000037547.8	1	ENSMUSG00000040035	missense	K/T	656	Disp2	ENSMUST00000037547.8:c.1967A>C	ENSMUSP00000037136.2:p.Lys656Thr	H-2-Kb	8	10	2	ITFRYIWI	IKFRYIWI	SMMPMBEC	23.864	137.006	5.741	135	0.059	26.75	336.241	12.57	1065.87	53.31	525	26.6	147.4823333	26.89923939	137.0061303	23.86382195	M6_p20	0.628571429	0.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.07	135	0	0	NA	2qE5	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.328740692	sgMsh2	cell line
chr2	130137453	130137453	G	A	ENSMUST00000028888.4	1	ENSMUSG00000027403	missense	V/M	168	Tgm6	ENSMUST00000028888.4:c.502G>A	ENSMUSP00000028888.4:p.Val168Met	H-2-Kb	8	4	8	SGVIFRGM	SGVIFRGV	NetMHC	54.28	72.19	1.33	163	0.129	150.598	161.821	1.075	72.19	54.28	105.5	57	218.1423563	244.7597495	225.8083514	244.1968177	M6_p20	1.157142857	1.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.137	163	0	0	NA	2qF1	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.643392496	sgMsh2	cell line
chr2	132240580	132240580	A	G	ENSMUST00000110164.7	2	ENSMUSG00000027341	missense	F/S	90	Tmem230	ENSMUST00000110164.7:c.269T>C	ENSMUSP00000105793.1:p.Phe90Ser	H-2-Kb	8	11	1	SLPGFYHL	FLPGFYHL	NetMHCpan	98.2	522.1	5.317	233	0.185	164.475	459.527	2.794	694.44	114.79	522.1	98.2	387.9180607	214.1608096	396.9538331	229.4774419	M6_p20	0.557142857	0.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.197	233	0	0	NA	2qF2	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.925170232	sgMsh2	cell line
chr2	152004194	152004194	T	C	ENSMUST00000073228.11	1	ENSMUSG00000027463	missense	V/A	25	Slc52a3	ENSMUST00000073228.11:c.74T>C	ENSMUSP00000072961.5:p.Val25Ala	H-2-Kb	8	6	6	INGLWAEL	INGLWVEL	SMMPMBEC	144.125	415.662	2.884	56	0.161	176.594	546.352	3.094	646.97	156.97	525.5	212.8	567.204934	196.218522	415.6616909	144.1252256	M6_p20	0.157142857	0.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.166	56	0	0	NA	2qG3	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.779585069	sgMsh2	cell line
chr2	119139420	119139420	GT	G	ENSMUST00000094695.11	1	ENSMUSG00000070730	FS	T/X	387	Rmdn3	ENSMUST00000094695.11:c.1159del	ENSMUSP00000092283.5:p.Thr387ArgfsTer46	H-2-Kb	8	37	0	YSQDFQKL	NA	SMM	227.898	NA	NA	146	0.219	263.57	NA	NA	NA	233.55	NA	302.9	NA	227.8977303	NA	293.5891489	M6_p20	-1.228571429	-1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2192	146	0	0	NA	2qE5	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr2	121343482	121343482	C	A	ENSMUST00000052029.9	1	ENSMUSG00000033526	missense	G/V	386	Ppip5k1	ENSMUST00000052029.9:c.1157G>T	ENSMUSP00000057632.3:p.Gly386Val	H-2-Kb	8	9	3	TSVTMMEL	TSGTMMEL	NetMHC	281.07	2080.14	7.401	332	0.139	498.949	1674.977	3.357	2080.14	281.07	3652.7	480.6	1269.813676	529.3464441	1116.194813	517.2970479	M6_p20	0.971428571	0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.134	332	0	0	NA	2qE5	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.62930361	sgMsh2	cell line
chr2	110265593	110265593	T	A	ENSMUST00000046233.8	1	ENSMUSG00000041660	missense	N/I	342	Bbox1	ENSMUST00000046233.8:c.1025A>T	ENSMUSP00000046302.2:p.Asn342Ile	H-2-Kb	8	7	5	ITFDIWRL	ITFDNWRL	NetMHCpan	54.2	79.3	1.463	168	0.208	96.512	87.498	0.907	262.12	458.63	79.3	54.2	90.51905263	105.3755853	84.47729517	87.64759423	M6_p20	0.214285714	0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.223	168	0	0	NA	2qE3	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr2	111449611	111449611	T	C	ENSMUST00000075390.1	NA	ENSMUSG00000095586	missense	M/T	157	Olfr1287	ENSMUST00000075390.1:c.470T>C	ENSMUSP00000074850.1:p.Met157Thr	H-2-Kb	8	5	7	IGFIHATS	IGFIHAMS	SMM	100.401	88.459	0.881	1172	0.151	214.062	182.421	0.852	651.86	981.33	235.5	283	88.45858744	100.4014535	129.3421274	145.1242539	M6_p20	0.571428571	1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.152	1172	0	0	NA	2qE3	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.71383693	sgMsh2	cell line
chr2	132240580	132240580	A	G	ENSMUST00000110164.7	2	ENSMUSG00000027341	missense	F/S	90	Tmem230	ENSMUST00000110164.7:c.269T>C	ENSMUSP00000105793.1:p.Phe90Ser	H-2-Kb	9	10	2	VSLPGFYHL	VFLPGFYHL	NetMHC	22.77	187.13	8.218	233	0.185	93.901	246.108	2.621	187.13	22.77	200.4	30	291.8166046	157.8010905	341.3893746	169.9221522	M6_p20	0.557142857	0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.197	233	0	0	NA	2qF2	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.925170232	sgMsh2	cell line
chr2	111537918	111537918	C	G	ENSMUST00000208675.2	2	ENSMUSG00000109547	missense	V/L	124	Olfr1294	ENSMUST00000208675.2:c.370G>C	ENSMUSP00000146438.1:p.Val124Leu	H-2-Kb	9	5	7	MAYDRYLAI	MAYDRYVAI	NetMHCpan	14.8	14.4	0.973	627	0.159	34.154	30.259	0.886	27.08	30.53	14.4	14.8	39.27443988	39.82080176	33.43874735	37.77896015	M6_p20	-0.071428571	-0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.16	627	0	0	NA	2qE3	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.751407295	sgMsh2	cell line
chr2	111537918	111537918	C	G	ENSMUST00000208675.2	2	ENSMUSG00000109547	missense	V/L	124	Olfr1294	ENSMUST00000208675.2:c.370G>C	ENSMUSP00000146438.1:p.Val124Leu	H-2-Kb	9	3	9	VAMAYDRYL	VAMAYDRYV	NetMHC	34.74	105.62	3.04	627	0.159	119.516	324.279	2.713	105.62	34.74	254	63.6	394.5572246	175.4324789	422.9119919	188.9078477	M6_p20	-0.442857143	0.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.16	627	0	0	NA	2qE3	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.751407295	sgMsh2	cell line
chr2	112130499	112130499	A	G	ENSMUST00000099596.1	NA	ENSMUSG00000109801	missense	I/T	106	Olfr1316	ENSMUST00000099596.1:c.317T>C	ENSMUSP00000097191.1:p.Ile106Thr	H-2-Kb	9	5	7	VIQIFSTHV	VIQIFSIHV	NetMHC	47.46	117.78	2.482	622	0.093	217.784	332.011	1.524	117.78	47.46	328.2	117.8	335.8226621	317.7678825	471.2485208	428.7952838	M6_p20	0.471428571	1.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.095	622	0	0	NA	2qE3	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.446148081	sgMsh2	cell line
chr2	110265593	110265593	T	A	ENSMUST00000046233.8	1	ENSMUSG00000041660	missense	N/I	342	Bbox1	ENSMUST00000046233.8:c.1025A>T	ENSMUSP00000046302.2:p.Asn342Ile	H-2-Kb	9	7	5	ITFDIWRLL	ITFDNWRLL	NetMHCpan	45.4	49.9	1.099	168	0.208	134.553	91.818	0.682	47.54	89.53	49.9	45.4	138.3916859	195.4834522	133.7365144	179.5767056	M6_p20	0.857142857	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.223	168	0	0	NA	2qE3	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr2	154009883	154009883	A	C	ENSMUST00000048103.8	1	ENSMUSG00000042459	missense	S/R	80	Bpifa2	ENSMUST00000048103.8:c.238A>C	ENSMUSP00000046080.2:p.Ser80Arg	H-2-Kb	9	7	5	GNLKRFTSL	GNLKSFTSL	NetMHCpan	89.5	315.6	3.526	240	0.079	143.67	567.398	3.949	632.69	145.68	315.6	89.5	584.9382211	169.8673846	549.8573061	141.6609011	M6_p20	0.071428571	0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.081	240	0	0	NA	2qH1	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.380399943	sgMsh2	cell line
chr2	155632414	155632414	G	A	ENSMUST00000092995.5	5	ENSMUSG00000074652	missense	R/H	1683	Myh7b	ENSMUST00000092995.5:c.5048G>A	ENSMUSP00000090672.5:p.Arg1683His	H-2-Kb	9	7	5	QALEHRAAL	QALERRAAL	NetMHC	150.12	211.77	1.411	37	0.243	306.799	286.735	0.935	211.77	150.12	1066.6	619.8	260.6813732	269.8422814	312.7879401	343.7557727	M6_p20	-1.27E-16	-1.27E-16	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.269	37	0	0	NA	2qH1	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	2	1	sgMsh2	cell line
chr2	126459694	126459694	A	G	ENSMUST00000040128.11	5	ENSMUSG00000060131	missense	I/T	82	Atp8b4	ENSMUST00000040128.11:c.245T>C	ENSMUSP00000046444.5:p.Ile82Thr	H-2-Kb	9	6	6	TWFTTTVPL	TWFTTIVPL	SMM	134.62	133.386	0.991	323	0.139	173.938	143.61	0.826	148.82	157.22	138.4	194.4	133.3859235	134.6201283	175.4890407	190.6557905	M6_p20	1.014285714	1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.149	323	0	0	NA	2qF1	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.699748043	sgMsh2	cell line
chr2	126459694	126459694	A	G	ENSMUST00000040128.11	5	ENSMUSG00000060131	missense	I/T	82	Atp8b4	ENSMUST00000040128.11:c.245T>C	ENSMUSP00000046444.5:p.Ile82Thr	H-2-Kb	9	3	9	SSLTWFTTT	SSLTWFTTI	NetMHC	177.03	22.12	0.125	323	0.139	294.724	95.436	0.324	22.12	177.03	21.6	222.8	186.2558834	433.6206938	168.7524163	366.6485738	M6_p20	0.414285714	0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.149	323	0	0	NA	2qF1	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.699748043	sgMsh2	cell line
chr2	119139420	119139420	GT	G	ENSMUST00000094695.11	1	ENSMUSG00000070730	FS	T/X	387	Rmdn3	ENSMUST00000094695.11:c.1159del	ENSMUSP00000092283.5:p.Thr387ArgfsTer46	H-2-Kb	9	45	0	DGYIFLSAI	NA	NetMHC	187.49	NA	NA	146	0.219	309.473	NA	NA	NA	187.49	NA	212.4	NA	406.5462879	NA	510.7989549	M6_p20	2.185714286	2.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2192	146	0	0	NA	2qE5	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr2	121348531	121348531	C	T	ENSMUST00000052029.9	1	ENSMUSG00000033526	missense	S/N	238	Ppip5k1	ENSMUST00000052029.9:c.713G>A	ENSMUSP00000057632.3:p.Ser238Asn	H-2-Kb	9	4	8	SVYSPESNV	SVYSPESSV	SMM	190.594	221.876	1.164	325	0.145	308.084	401.872	1.304	330.32	195.2	875.3	523.6	221.8758325	190.5943402	473.4237051	420.9688878	M6_p20	-1.042857143	-0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.163	325	0	0	NA	2qE5	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.765496182	sgMsh2	cell line
chr2	122123858	122123858	C	T	ENSMUST00000028665.4	1	ENSMUSG00000027233	missense	G/S	411	Patl2	ENSMUST00000028665.4:c.1231G>A	ENSMUSP00000028665.4:p.Gly411Ser	H-2-Kb	9	11	1	SLHMLFKPL	GLHMLFKPL	NetMHCpan	116.1	1434.7	12.357	337	0.125	452.867	1779.655	3.93	3440.74	281.64	1434.7	116.1	2009.601749	709.7575157	1549.708446	624.0939895	M6_p20	0.514285714	0.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.114	337	0	0	NA	2qE5	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.535377698	sgMsh2	cell line
chr2	117177703	117177703	A	G	ENSMUST00000028829.12	1	ENSMUSG00000027351	missense	I/M	363	Spred1	ENSMUST00000028829.12:c.1089A>G	ENSMUSP00000028829.6:p.Ile363Met	H-2-Kb	9	10	2	CMYQVSCML	CIYQVSCML	SMM	228.618	511.811	2.239	242	0.207	331.205	563.356	1.701	483.81	295.31	614.9	367.1	511.811453	228.6177783	851.6281337	411.386466	M6_p20	0.971428571	0.971428571	TRUE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.223	242	0	0	NA	2qE5	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr2	111379635	111379635	T	C	ENSMUST00000062407.5	5	ENSMUSG00000108931	missense	F/L	212	Olfr1284	ENSMUST00000062407.5:c.634T>C	ENSMUSP00000052153.4:p.Phe212Leu	H-2-Kb	9	5	7	MTLGTFLLL	MTLGTFFLL	NetMHCpan	246.9	192.4	0.779	431	0.077	312.574	264.729	0.847	258.37	322.38	192.4	246.9	271.0878168	302.7680195	408.5545015	416.1500968	M6_p20	2.414285714	2.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.085	431	0	0	NA	2qE3	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.399185125	sgMsh2	cell line
chr2	146460717	146460717	T	C	ENSMUST00000109986.8	5	ENSMUSG00000037110	missense	I/V	109	Ralgapa2	ENSMUST00000109986.8:c.325A>G	ENSMUSP00000105613.2:p.Ile109Val	H-2-Kb	9	3	9	FFRWHYQSV	FFRWHYQSI	SMM	325.17	359.013	1.104	231	0.16	353.047	397.168	1.125	411.29	335.2	1082	1393.4	359.0128555	325.1696473	383.0451784	370.8941642	M6_p20	-1.428571429	-1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.163	231	0	0	NA	2qG1	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.765496182	sgMsh2	cell line
chr2	127804943	127804943	A	G	ENSMUST00000028858.7	1	ENSMUSG00000027379	missense	F/L	806	Bub1	ENSMUST00000028858.7:c.2416T>C	ENSMUSP00000028858.7:p.Phe806Leu	H-2-Kb	9	7	5	NSWELYIGM	NSWEFYIGM	NetMHCpan	313.5	33.5	0.107	196	0.204	385.433	70.587	0.183	26.27	375.4	33.5	313.5	107.67379	395.4667729	126.5464598	412.3348098	M6_p20	0.585714286	0.585714286	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.211	196	0	0	NA	2qF1	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.99091837	sgMsh2	cell line
chr2	93704611	93704611	A	G	ENSMUST00000028623.12	1	ENSMUSG00000027198	missense	Y/H	603	Ext2	ENSMUST00000028623.12:c.1807T>C	ENSMUSP00000028623.6:p.Tyr603His	H-2-Kb	9	7	5	FYHKHFNYL	FYHKYFNYL	SMM	156.354	125.346	0.802	234	0.064	281.658	187.186	0.665	225.35	376.14	230.6	511.4	125.3458616	156.3543614	149.021867	187.1759302	M6_p20	-1.214285714	-1.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.085	234	0	0	NA	2qE1	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.399185125	sgMsh2	cell line
chr2	93704611	93704611	A	G	ENSMUST00000028623.12	1	ENSMUSG00000027198	missense	Y/H	603	Ext2	ENSMUST00000028623.12:c.1807T>C	ENSMUSP00000028623.6:p.Tyr603His	H-2-Kb	10	6	6	AFYHKHFNYL	AFYHKYFNYL	NetMHC	113.13	52.58	0.465	234	0.064	444.609	403.633	0.908	52.58	113.13	93	199.2	987.0291979	987.0291979	714.2660368	690.0173327	M6_p20	-1.214285714	-0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.085	234	0	0	NA	2qE1	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.399185125	sgMsh2	cell line
chr2	158768178	158768178	C	T	ENSMUST00000029183.2	1	ENSMUSG00000027654	missense	P/L	22	Fam83d	ENSMUST00000029183.2:c.65C>T	ENSMUSP00000029183.2:p.Pro22Leu	H-2-Db	9	8	4	CGPLNPTEL	CGPPNPTEL	NetMHC	65.56	425.32	6.487	32	0.375	216.905	644.766	2.973	425.32	65.56	306.4	93.7	864.2114181	340.1104688	1154.968129	410.7428385	M6_p20	-0.471428571	-0.214285714	TRUE	FALSE	FALSE	1	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.373	32	0	0	NA	2qH1	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	2	1	sgMsh2	cell line
chr3	38483027	38483027	T	C	ENSMUST00000120875.7	1	ENSMUSG00000044864	missense	N/S	59	Ankrd50	ENSMUST00000120875.7:c.176A>G	ENSMUSP00000113349.1:p.Asn59Ser	H-2-Db	9	8	4	NAGSNASAI	NAGNNASAI	NetMHC	88.49	219.73	2.483	80	0.212	174.461	235.624	1.351	219.73	88.49	839.4	508.8	212.1387473	162.0391663	251.518538	186.8830873	M6_p20	0.371428571	0.371428571	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.214	80	0	0	NA	3qB	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr3	59319877	59319877	CT	C	ENSMUST00000039419.11	5	ENSMUSG00000036334	FS	K/X	2125	Igsf10	ENSMUST00000039419.11:c.6374del	ENSMUSP00000037246.6:p.Lys2125ArgfsTer50	H-2-Db	9	21	0	RSLGNPSQM	NA	SMM	101.069	NA	NA	265	0.162	166.796	NA	NA	NA	272.27	NA	231.6	NA	101.0694727	NA	101.992914	M6_p20	-0.585714286	-0.585714286	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;Vardict	3	0.167	265	0	0	NA	3qD	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.784281364	sgMsh2	cell line
chr2	180583499	180583499	A	G	ENSMUST00000029085.8	1	ENSMUSG00000027569	missense	T/A	83	Mrgbp	ENSMUST00000029085.8:c.247A>G	ENSMUSP00000029085.8:p.Thr83Ala	H-2-Db	9	10	2	SAMYDMQAL	STMYDMQAL	NetMHCpan	338.9	3104.4	9.16	164	0.049	412.293	3121.081	7.57	4556.07	341.95	3104.4	338.9	3137.762006	482.636319	2975.568825	520.6789256	M6_p20	0.157142857	0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.061	164	0	0	NA	2qH4	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.286474031	sgMsh2	cell line
chr3	27239540	27239540	T	G	ENSMUST00000046515.14	1	ENSMUSG00000027698	missense	L/R	149	Nceh1	ENSMUST00000046515.14:c.446T>G	ENSMUSP00000045864.8:p.Leu149Arg	H-2-Kb	8	5	7	VSIEYRRV	VSIEYRLV	NetMHC	5.85	8.14	1.391	170	0.135	16.448	28.261	1.718	8.14	5.85	19.9	16.5	36.62182643	16.39607892	43.62545806	18.4391119	M6_p20	-0.842857143	-0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.155	170	0	0	NA	3qA3	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.727925817	sgMsh2	cell line
chr2	180714861	180714861	A	G	ENSMUST00000078687.5	1	ENSMUSG00000027573	missense	N/S	97	Gid8	ENSMUST00000078687.5:c.290A>G	ENSMUSP00000077753.5:p.Asn97Ser	H-2-Kb	8	11	1	SRYLYFHL	NRYLYFHL	NetMHC	8.14	142.06	17.452	181	0.21	15.146	118.423	7.819	142.06	8.14	235.5	34.2	94.78508415	14.91900983	87.24489012	15.37234066	M6_p20	0.014285714	0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.214	181	0	0	NA	2qH4	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr3	49744983	49744983	A	G	ENSMUST00000035931.12	1	ENSMUSG00000037892	missense	V/A	1010	Pcdh18	ENSMUST00000035931.12:c.3029T>C	ENSMUSP00000039245.7:p.Val1010Ala	H-2-Kb	8	8	4	MSSAFQRL	MSSVFQRL	NetMHC	25.6	16.67	0.651	126	0.167	49.318	38.527	0.781	16.67	25.6	30.2	49.8	46.85328006	48.83599043	51.01994663	60.08139392	M6_p20	-0.171428571	-0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.173	126	0	0	NA	3qC	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.812459138	sgMsh2	cell line
chr2	180583499	180583499	A	G	ENSMUST00000029085.8	1	ENSMUSG00000027569	missense	T/A	83	Mrgbp	ENSMUST00000029085.8:c.247A>G	ENSMUSP00000029085.8:p.Thr83Ala	H-2-Kb	8	11	1	AMYDMQAL	TMYDMQAL	NetMHCpan	73.9	56.7	0.767	164	0.049	127.758	106.842	0.836	70.22	74.49	56.7	73.9	143.4630303	181.0256018	185.6692572	236.4503711	M6_p20	0.157142857	0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.061	164	0	0	NA	2qH4	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.286474031	sgMsh2	cell line
chr3	59217615	59217615	A	G	ENSMUST00000196583.4	5	ENSMUSG00000036353	missense	V/A	213	P2ry12	ENSMUST00000196583.4:c.638T>C	ENSMUSP00000143036.1:p.Val213Ala	H-2-Kb	8	8	4	IVIACYSL	IVIVCYSL	NetMHC	84.61	66.24	0.783	178	0.163	116.467	110.623	0.95	66.24	84.61	99.7	89.8	156.5813381	163.2074578	121.5458122	143.1330745	M6_p20	2.1	2.2	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.183	178	0	0	NA	3qD	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.859422094	sgMsh2	cell line
chr3	59319877	59319877	CT	C	ENSMUST00000039419.11	5	ENSMUSG00000036334	FS	K/X	2125	Igsf10	ENSMUST00000039419.11:c.6374del	ENSMUSP00000037246.6:p.Lys2125ArgfsTer50	H-2-Kb	8	45	0	TGSYFMPM	NA	NetMHCpan	71.2	NA	NA	265	0.162	309.636	NA	NA	NA	93.57	NA	71.2	NA	535.475987	NA	525.7024488	M6_p20	0.357142857	0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.167	265	0	0	NA	3qD	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.784281364	sgMsh2	cell line
chr3	28794409	28794409	G	A	ENSMUST00000060500.8	1	ENSMUSG00000050192	missense	C/Y	139	Eif5a2	ENSMUST00000060500.8:c.416G>A	ENSMUSP00000050289.7:p.Cys139Tyr	H-2-Kb	8	7	5	VSVMYAMS	VSVMCAMS	SMM	72.734	814.217	11.194	351	0.265	100.979	2855.808	28.281	5114.17	120.91	4897.4	389.8	814.2166892	72.73442335	792.027024	81.04757034	M6_p20	0.985714286	1.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.271	351	0	0	NA	3qA3	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	2	1	sgMsh2	cell line
chr2	164820502	164820502	C	T	ENSMUST00000052107.4	1	ENSMUSG00000045822	missense	L/F	301	Zswim3	ENSMUST00000052107.4:c.901C>T	ENSMUSP00000050970.3:p.Leu301Phe	H-2-Kb	8	7	5	SARTFLSI	SARTLLSI	NetMHCpan	150.2	2729.6	18.173	147	0.177	269.723	3724.819	13.81	3719.37	185.66	2729.6	150.2	3730.267702	353.7854762	4214.44121	395.1299959	M6_p20	0.985714286	0.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.181	147	0	0	NA	2qH3	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.850029502	sgMsh2	cell line
chr3	59217615	59217615	A	G	ENSMUST00000196583.4	5	ENSMUSG00000036353	missense	V/A	213	P2ry12	ENSMUST00000196583.4:c.638T>C	ENSMUSP00000143036.1:p.Val213Ala	H-2-Kb	8	9	3	VIACYSLI	VIVCYSLI	NetMHCpan	203.7	96.5	0.474	178	0.163	265.587	146.812	0.553	73.1	238.26	96.5	203.7	197.1242255	292.9139126	202.1808416	392.4099402	M6_p20	2.142857143	2.142857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.183	178	0	0	NA	3qD	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.859422094	sgMsh2	cell line
chr3	59319877	59319877	CT	C	ENSMUST00000039419.11	5	ENSMUSG00000036334	FS	K/X	2125	Igsf10	ENSMUST00000039419.11:c.6374del	ENSMUSP00000037246.6:p.Lys2125ArgfsTer50	H-2-Kb	8	16	0	LSWTVRSL	NA	NetMHCpan	175.3	NA	NA	265	0.162	208.072	NA	NA	NA	288.96	NA	175.3	NA	234.2825811	NA	181.861178	M6_p20	0.042857143	0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.167	265	0	0	NA	3qD	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.784281364	sgMsh2	cell line
chr2	164025647	164025647	A	G	ENSMUST00000067715.4	1	ENSMUSG00000054582	missense	Y/C	56	Pabpc1l	ENSMUST00000067715.4:c.167A>G	ENSMUSP00000096701.3:p.Tyr56Cys	H-2-Kb	8	5	7	RSLGYACI	RSLGYAYI	SMMPMBEC	239.74	86.445	0.361	60	0.1	315.363	69.973	0.222	31.14	336.46	53.5	359.4	96.54727043	294.2659418	86.44502416	239.7397234	M6_p20	1.442857143	1.442857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.131	60	0	0	NA	2qH3	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.615214723	sgMsh2	cell line
chr3	69575824	69575824	A	G	ENSMUST00000061826.2	1	ENSMUSG00000043300	missense	Y/H	35	B3galnt1	ENSMUST00000061826.2:c.103T>C	ENSMUSP00000058363.1:p.Tyr35His	H-2-Kb	8	7	5	LVIWHLSL	LVIWYLSL	NetMHCpan	130.4	33.6	0.258	182	0.11	429.29	80.664	0.188	62.76	492.62	33.6	130.4	111.6194813	432.2549746	98.56892043	426.324214	M6_p20	1.628571429	1.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.12	182	0	0	NA	3qE1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.563555471	sgMsh2	cell line
chr3	68927791	68927791	A	G	ENSMUST00000107812.7	5	ENSMUSG00000027778	missense	I/T	439	Ift80	ENSMUST00000107812.7:c.1316T>C	ENSMUSP00000103442.1:p.Ile439Thr	H-2-Kb	8	11	1	TIFLFEAS	IIFLFEAS	SMM	114.483	40.902	0.357	133	0.278	496.639	214.122	0.431	378.83	1363.31	368.3	827.8	40.90157201	114.482736	59.94321055	165.4778997	M6_p20	1.628571429	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.312	133	0	0	NA	3qE1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	2	1	sgMsh2	cell line
chr2	178420663	178420663	A	G	ENSMUST00000094251.10	1	ENSMUSG00000070476	missense	E/G	140	Fam217b	ENSMUST00000094251.10:c.419A>G	ENSMUSP00000091805.4:p.Glu140Gly	H-2-Kb	9	4	8	VSFSLHPGL	VSFSLHPEL	NetMHC	7.47	15.63	2.092	85	0.106	22.824	29.199	1.279	15.63	7.47	12.7	8.4	42.76711949	37.24860392	53.73410257	48.44511598	M6_p20	0.628571429	0.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.125	85	0	0	NA	2qH4	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.587036949	sgMsh2	cell line
chr2	180714861	180714861	A	G	ENSMUST00000078687.5	1	ENSMUSG00000027573	missense	N/S	97	Gid8	ENSMUST00000078687.5:c.290A>G	ENSMUSP00000077753.5:p.Asn97Ser	H-2-Kb	9	10	2	TSRYLYFHL	TNRYLYFHL	NetMHC	31.73	61.26	1.931	181	0.21	64.842	81.222	1.253	61.26	31.73	45.4	34.6	101.1835704	95.08455975	115.9444594	104.2917608	M6_p20	0.014285714	0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.214	181	0	0	NA	2qH4	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr3	59319877	59319877	CT	C	ENSMUST00000039419.11	5	ENSMUSG00000036334	FS	K/X	2125	Igsf10	ENSMUST00000039419.11:c.6374del	ENSMUSP00000037246.6:p.Lys2125ArgfsTer50	H-2-Kb	9	44	0	MTGSYFMPM	NA	NetMHC	50.32	NA	NA	265	0.162	82.887	NA	NA	NA	50.32	NA	50.4	NA	115.3745446	NA	141.6609011	M6_p20	0.357142857	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.167	265	0	0	NA	3qD	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.784281364	sgMsh2	cell line
chr3	49754760	49754760	A	T	ENSMUST00000035931.12	1	ENSMUSG00000037892	missense	I/K	702	Pcdh18	ENSMUST00000035931.12:c.2105T>A	ENSMUSP00000039245.7:p.Ile702Lys	H-2-Kb	9	7	5	VSMIKIISL	VSMIIIISL	NetMHCpan	40.7	239.5	5.885	326	0.052	93.33	330.577	3.542	335.13	70.18	239.5	40.7	381.1623536	136.1789559	326.0243217	116.4796347	M6_p20	2.071428571	2.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.057	326	0	0	NA	3qC	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.267688849	sgMsh2	cell line
chr2	180583499	180583499	A	G	ENSMUST00000029085.8	1	ENSMUSG00000027569	missense	T/A	83	Mrgbp	ENSMUST00000029085.8:c.247A>G	ENSMUSP00000029085.8:p.Thr83Ala	H-2-Kb	9	4	8	VIWDHLSAM	VIWDHLSTM	NetMHCpan	73.8	57.5	0.779	164	0.049	77.793	86.56	1.113	88.57	75.95	57.5	73.8	84.54929682	79.63610307	91.88613834	85.35913393	M6_p20	-0.128571429	0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.061	164	0	0	NA	2qH4	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.286474031	sgMsh2	cell line
chr3	59217615	59217615	A	G	ENSMUST00000196583.4	5	ENSMUSG00000036353	missense	V/A	213	P2ry12	ENSMUST00000196583.4:c.638T>C	ENSMUSP00000143036.1:p.Val213Ala	H-2-Kb	9	8	4	IVIACYSLI	IVIVCYSLI	NetMHC	82.85	63.52	0.767	178	0.163	152.628	129.073	0.846	63.52	82.85	149.1	123.6	125.6348137	198.6598028	132.5104107	181.6561058	M6_p20	2.142857143	2.2	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.183	178	0	0	NA	3qD	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.859422094	sgMsh2	cell line
chr3	53043350	53043350	T	G	ENSMUST00000059562.13	1	ENSMUSG00000048332	missense	L/R	15	Lhfp	ENSMUST00000059562.13:c.44T>G	ENSMUSP00000056364.7:p.Leu15Arg	H-2-Kb	9	6	6	VIWALRSFL	VIWALLSFL	NetMHCpan	126.9	167.1	1.317	166	0.12	268.467	195.773	0.729	119.48	160.88	167.1	126.9	224.4450336	378.5384504	234.557865	376.053816	M6_p20	0.857142857	1.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.121	166	0	0	NA	3qC	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.568251767	sgMsh2	cell line
chr3	68927791	68927791	A	G	ENSMUST00000107812.7	5	ENSMUSG00000027778	missense	I/T	439	Ift80	ENSMUST00000107812.7:c.1316T>C	ENSMUSP00000103442.1:p.Ile439Thr	H-2-Kb	9	11	1	TIFLFEAST	IIFLFEAST	NetMHC	181.4	78.59	0.433	133	0.278	236.705	140.504	0.594	78.59	181.4	219.4	418.7	139.6722084	239.3922023	141.3350901	234.0183969	M6_p20	0.885714286	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.312	133	0	0	NA	3qE1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	2	1	sgMsh2	cell line
chr3	59319877	59319877	CT	C	ENSMUST00000039419.11	5	ENSMUSG00000036334	FS	K/X	2125	Igsf10	ENSMUST00000039419.11:c.6374del	ENSMUSP00000037246.6:p.Lys2125ArgfsTer50	H-2-Kb	9	36	0	PTMSFHSPM	NA	SMM	151.743	NA	NA	265	0.162	205.998	NA	NA	NA	181.72	NA	235.2	NA	151.7434661	NA	230.2767015	M6_p20	0.028571429	0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.167	265	0	0	NA	3qD	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.784281364	sgMsh2	cell line
chr2	158120220	158120220	T	C	ENSMUST00000103122.9	1	ENSMUSG00000037820	missense	I/V	560	Tgm2	ENSMUST00000103122.9:c.1678A>G	ENSMUSP00000099411.3:p.Ile560Val	H-2-Kb	9	8	4	SNLVKVRGL	SNLIKVRGL	NetMHC	221.73	256.46	1.157	97	0.113	313.145	361.082	1.153	256.46	221.73	250.6	241.6	465.7040341	384.6892055	496.8782653	504.9518876	M6_p20	1.028571429	1.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.144	97	0	0	NA	2qH1	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.676266565	sgMsh2	cell line
chr3	49744983	49744983	A	G	ENSMUST00000035931.12	1	ENSMUSG00000037892	missense	V/A	1010	Pcdh18	ENSMUST00000035931.12:c.3029T>C	ENSMUSP00000039245.7:p.Val1010Ala	H-2-Kb	9	10	2	SAFQRLLPA	SVFQRLLPA	NetMHCpan	169.1	221.8	1.312	126	0.167	325.995	371.397	1.139	424.18	359.31	221.8	169.1	391.8411118	348.4255546	350.9538411	303.5638135	M6_p20	0.371428571	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.173	126	0	0	NA	3qC	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.812459138	sgMsh2	cell line
chr2	157169951	157169951	T	A	ENSMUST00000029170.7	1	ENSMUSG00000027641	missense	I/F	695	Rbl1	ENSMUST00000029170.7:c.2083A>T	ENSMUSP00000029170.7:p.Ile695Phe	H-2-Kb	9	9	3	LSFSPGQAL	LSISPGQAL	NetMHC	401.58	1818.42	4.528	174	0.138	492.319	1877.978	3.815	1818.42	401.58	2647.2	466.9	1445.805924	517.7379503	1937.536979	721.5227015	M6_p20	0.3	0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.151	174	0	0	NA	2qH1	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.709140635	sgMsh2	cell line
chr3	15543244	15543244	G	A	ENSMUST00000091319.6	1	ENSMUSG00000095028	missense	S/F	147	Sirpb1b	ENSMUST00000091319.6:c.440C>T	ENSMUSP00000088869.4:p.Ser147Phe	H-2-Kb	9	6	6	VLAKPFSPM	VLAKPSSPM	NetMHCpan	157.9	1906.4	12.073	398	0.058	462.819	2055.297	4.441	2662.62	463.14	1906.4	157.9	1318.590675	462.4981501	2204.194935	622.6586131	M6_p20	-0.2	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.059	398	0	0	NA	3qA1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.27708144	sgMsh2	cell line
chr3	59319877	59319877	CT	C	ENSMUST00000039419.11	5	ENSMUSG00000036334	FS	K/X	2125	Igsf10	ENSMUST00000039419.11:c.6374del	ENSMUSP00000037246.6:p.Lys2125ArgfsTer50	H-2-Kb	9	46	0	GSYFMPMEL	NA	NetMHCpan	233.3	NA	NA	265	0.162	268.388	NA	NA	NA	477.81	NA	233.3	NA	242.1642333	NA	294.6117067	M6_p20	0.571428571	0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.167	265	0	0	NA	3qD	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.784281364	sgMsh2	cell line
chr2	160753658	160753658	T	C	ENSMUST00000103115.7	1	ENSMUSG00000016933	missense	Y/H	509	Plcg1	ENSMUST00000103115.7:c.1525T>C	ENSMUSP00000099404.1:p.Tyr509His	H-2-Kb	9	6	6	EWYPHHFVL	EWYPHYFVL	SMM	204.696	58.494	0.286	97	0.196	326.923	129.606	0.396	278.91	720.61	181.9	407.1	58.49382211	204.6963035	77.31255038	246.7459312	M6_p20	0.214285714	0.214285714	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.19	97	0	0	NA	2qH2	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.892296163	sgMsh2	cell line
chr3	80860236	80860236	AT	A	ENSMUST00000029654.14	1	ENSMUSG00000028020	FS	I/X	226	Glrb	ENSMUST00000029654.14:c.676del	ENSMUSP00000029654.8:p.Ile226LeufsTer37	H-2-Db	9	20	0	RRISNMATV	NA	SMMPMBEC	200.249	NA	NA	133	0.15	384.587	NA	NA	NA	531.15	NA	1363	NA	238.0235894	NA	200.2488359	M6_p20	1.057142857	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.131	133	0	0	NA	3qE3	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.615214723	sgMsh2	cell line
chr3	105005546	105005546	C	A	ENSMUST00000077548.11	1	ENSMUSG00000062127	missense	A/S	341	Cttnbp2nl	ENSMUST00000077548.11:c.1021G>T	ENSMUSP00000076751.5:p.Ala341Ser	H-2-Kb	8	11	1	SAYSYAKA	AAYSYAKA	NetMHC	11.09	24.13	2.176	115	0.27	44.921	75.024	1.67	24.13	11.09	53.5	32.2	129.0446488	68.82401428	96.54727043	57.64212727	M6_p20	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.269	115	0	0	NA	3qF2.2	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	2	1	sgMsh2	cell line
chr3	88245865	88245865	T	G	ENSMUST00000171887.3	1	ENSMUSG00000104445	missense	S/R	261	Rhbg	ENSMUST00000171887.3:c.781A>C	ENSMUSP00000130767.1:p.Ser261Arg	H-2-Kb	8	8	4	STLRTFAL	STLSTFAL	NetMHC	23.82	41.85	1.757	239	0.155	131.83	198.362	1.505	41.85	23.82	149.7	97.8	247.0244836	165.8593656	264.691503	174.8799418	M6_p20	0.9	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.149	239	0	0	NA	3qF1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.699748043	sgMsh2	cell line
chr3	126981840	126981840	T	G	ENSMUST00000182078.8	5	ENSMUSG00000032826	missense	N/H	831	Ank2	ENSMUST00000182078.8:c.2491A>C	ENSMUSP00000138753.3:p.Asn831His	H-2-Kb	8	10	2	MHYLRYSL	MNYLRYSL	NetMHC	24.95	7.35	0.295	254	0.098	127.674	38.762	0.304	7.35	24.95	8.7	56.4	68.82401428	198.9481935	81.60936526	225.2890066	M6_p20	-0.5	-0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.11	254	0	0	NA	3qG2	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.516592515	sgMsh2	cell line
chr3	88245865	88245865	T	G	ENSMUST00000171887.3	1	ENSMUSG00000104445	missense	S/R	261	Rhbg	ENSMUST00000171887.3:c.781A>C	ENSMUSP00000130767.1:p.Ser261Arg	H-2-Kb	8	11	1	RTFALSAL	STFALSAL	NetMHC	38.74	14.57	0.376	239	0.155	51.2	21.65	0.423	14.57	38.74	20.3	53.9	23.00064421	48.49980584	29.22402293	57.90819124	M6_p20	1.785714286	1.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.149	239	0	0	NA	3qF1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.699748043	sgMsh2	cell line
chr3	95324761	95324761	T	C	ENSMUST00000015841.11	1	ENSMUSG00000015697	missense	T/A	1197	Setdb1	ENSMUST00000015841.11:c.3589A>G	ENSMUSP00000015841.5:p.Thr1197Ala	H-2-Kb	8	6	6	IAIKSANM	IAIKSTNM	NetMHC	52.92	235.57	4.451	187	0.107	168.576	468.607	2.78	235.57	52.92	336.4	126.9	600.8139392	210.2519343	666.4076901	228.4230889	M6_p20	0.257142857	0.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.101	187	0	0	NA	3qF2.1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.474325855	sgMsh2	cell line
chr3	108624645	108624645	A	G	ENSMUST00000051145.14	1	ENSMUSG00000040389	missense	Q/R	449	Wdr47	ENSMUST00000051145.14:c.1346A>G	ENSMUSP00000057482.8:p.Gln449Arg	H-2-Kb	8	11	1	RMYQQMLL	QMYQQMLL	NetMHC	67.4	94.29	1.399	162	0.056	121.812	213.148	1.75	94.29	67.4	182.1	93.4	244.1968177	150.2242346	524.4933667	251.0383085	M6_p20	0.442857143	0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.074	162	0	0	NA	3qF3	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.347525874	sgMsh2	cell line
chr3	127032016	127032016	T	C	ENSMUST00000182994.7	1	ENSMUSG00000032826	missense	T/A	445	Ank2	ENSMUST00000182994.7:c.1333A>G	ENSMUSP00000138089.1:p.Thr445Ala	H-2-Kb	8	12	1	AAKLFPPL	TAKLFPPL	NetMHCpan	52.4	50	0.954	222	0.113	91.882	75.718	0.824	63.18	71.37	50	52.4	97.89037676	123.5207728	88.25513833	112.3931906	M6_p20	0.728571429	0.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.125	222	0	0	NA	3qG2	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.587036949	sgMsh2	cell line
chr3	116895535	116895535	T	C	ENSMUST00000195905.4	5	ENSMUSG00000033386	missense	Y/H	352	Frrs1	ENSMUST00000195905.4:c.1054T>C	ENSMUSP00000143255.1:p.Tyr352His	H-2-Kb	8	6	6	ITYEKHNV	ITYEKYNV	NetMHCpan	72.9	26.7	0.366	222	0.162	114.948	62.295	0.542	19.92	95.08	26.7	72.9	97.89037676	134.8155538	117.9614222	155.8619122	M6_p20	-1.7	-1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.168	222	0	0	NA	3qG1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.78897766	sgMsh2	cell line
chr3	87913145	87913145	CT	C	ENSMUST00000005017.14	1	ENSMUSG00000004897	FS	F/X	48	Hdgf	ENSMUST00000005017.14:c.150del	ENSMUSP00000005017.8:p.Phe50LeufsTer91	H-2-Kb	8	9	5	QVFFLGPM	QVFFFGTH	NetMHCpan	133.5	6279.1	47.034	244	0.156	329.335	4621.078	14.032	8076.13	242.05	6279.1	133.5	2963.056959	416.6198901	1332.723329	491.7450535	M6_p20	1.928571429	1.928571429	TRUE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1557	244	0	0	NA	3qF1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.731213224	sgMsh2	cell line
chr3	122262639	122262639	T	G	ENSMUST00000029769.13	1	ENSMUSG00000028124	missense	I/S	126	Gclm	ENSMUST00000029769.13:c.377T>G	ENSMUSP00000029769.7:p.Ile126Ser	H-2-Kb	8	10	2	VSMASPPI	VIMASPPI	NetMHCpan	237.2	501.5	2.114	177	0.056	431.065	792.941	1.839	688.99	347.21	501.5	237.2	917.7829809	553.0189331	896.8916897	514.9202839	M6_p20	0.485714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.07	177	0	0	NA	3qG1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.328740692	sgMsh2	cell line
chr3	88449737	88449737	A	G	ENSMUST00000029700.11	1	ENSMUSG00000028064	missense	L/P	309	Sema4a	ENSMUST00000029700.11:c.926T>C	ENSMUSP00000029700.5:p.Leu309Pro	H-2-Kb	8	5	7	IIRHAVPL	IIRHAVLL	SMM	169.332	448.477	2.649	106	0.142	247.434	538.144	2.175	1021.35	349.03	569.6	310.9	448.476819	169.3323751	506.6872779	183.9670312	M6_p20	0.714285714	0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.161	106	0	0	NA	3qF1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.756103591	sgMsh2	cell line
chr3	87913145	87913145	CT	C	ENSMUST00000005017.14	1	ENSMUSG00000004897	FS	F/X	48	Hdgf	ENSMUST00000005017.14:c.150del	ENSMUSP00000005017.8:p.Phe50LeufsTer91	H-2-Kb	8	54	0	TTLQSRPL	NA	SMM	174.478	NA	NA	244	0.156	286.989	NA	NA	NA	375.03	NA	851.1	NA	174.4777291	NA	198.9481935	M6_p20	-0.5	-0.5	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1557	244	0	0	NA	3qF1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.731213224	sgMsh2	cell line
chr3	108883558	108883558	T	C	ENSMUST00000102620.9	1	ENSMUSG00000045326	missense	T/A	51	Fndc7	ENSMUST00000102620.9:c.151A>G	ENSMUSP00000099680.3:p.Thr51Ala	H-2-Kb	8	5	7	ITVEWTAV	ITVEWTTV	SMMPMBEC	324.146	510.199	1.574	402	0.167	373.787	554.126	1.482	686.4	388.04	465.6	437.7	598.0534499	359.5340277	510.1994663	324.1455024	M6_p20	0.628571429	0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.159	402	0	0	NA	3qF3	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.746710999	sgMsh2	cell line
chr3	108464426	108464426	AT	A	ENSMUST00000106625.9	5	ENSMUSG00000040412	FS	M/X	711	5330417C22Rik	ENSMUST00000106625.9:c.2131del	ENSMUSP00000102236.3:p.Met711TrpfsTer38	H-2-Kb	8	34	0	SQPMSARL	NA	NetMHC	403.32	NA	NA	51	0.176	468.776	NA	NA	NA	403.32	NA	1378.8	NA	453.6699358	NA	483.8825938	M6_p20	-0.414285714	-0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.177	51	0	0	NA	3qF3	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.83124432	sgMsh2	cell line
chr3	89948174	89948174	A	T	ENSMUST00000168276.7	5	ENSMUSG00000060671	missense	N/K	505	Atp8b2	ENSMUST00000168276.7:c.1515T>A	ENSMUSP00000128423.1:p.Asn505Lys	H-2-Kb	8	8	4	AARKFGFV	AARNFGFV	SMM	327.145	277.805	0.849	197	0.061	387.103	320.286	0.827	301.93	404.6	568.9	578.9	277.8049629	327.1447838	338.6413603	369.6068402	M6_p20	0.4	0.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.075	197	0	0	NA	3qF1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.35222217	sgMsh2	cell line
chr3	108464426	108464426	AT	A	ENSMUST00000106625.9	5	ENSMUSG00000040412	FS	M/X	711	5330417C22Rik	ENSMUST00000106625.9:c.2131del	ENSMUSP00000102236.3:p.Met711TrpfsTer38	H-2-Kb	8	17	0	MSLTSGSL	NA	SMM	194.42	NA	NA	51	0.176	316.602	NA	NA	NA	408.95	NA	475.7	NA	194.4195797	NA	224.2538976	M6_p20	0.585714286	0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.177	51	0	0	NA	3qF3	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.83124432	sgMsh2	cell line
chr3	90190923	90190923	C	T	ENSMUST00000029548.8	5	ENSMUSG00000027939	missense	S/L	1394	Nup210l	ENSMUST00000029548.8:c.4181C>T	ENSMUSP00000029548.4:p.Ser1394Leu	H-2-Kb	8	8	4	RTLLAFPL	RTLSAFPL	NetMHCpan	184	237.9	1.293	233	0.069	202.884	249.781	1.231	490.66	429.13	237.9	184	235.9065504	193.0812048	261.6616044	212.686537	M6_p20	1.957142857	1.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.078	233	0	0	NA	3qF1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.366311056	sgMsh2	cell line
chr3	106164811	106164811	A	G	ENSMUST00000063062.8	1	ENSMUSG00000040809	missense	V/A	16	Chil3	ENSMUST00000063062.8:c.47T>C	ENSMUSP00000053923.8:p.Val16Ala	H-2-Kb	8	6	6	AILLNAQL	AILLNVQL	SMMPMBEC	190.432	549.212	2.884	709	0.079	366.043	1259.005	3.439	1937.13	491.24	1821.8	847.9	696.209588	240.8463117	549.2119775	190.4320313	M6_p20	1.528571429	1.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.083	709	0	0	NA	3qF2.2	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.389792534	sgMsh2	cell line
chr3	123360923	123360923	T	C	ENSMUST00000047923.11	1	ENSMUSG00000039234	missense	M/T	927	Sec24d	ENSMUST00000047923.11:c.2780T>C	ENSMUSP00000035823.7:p.Met927Thr	H-2-Kb	8	10	2	NTFLWFGV	NMFLWFGV	SMMPMBEC	269.612	484.998	1.799	187	0.134	372.487	552.748	1.484	466.83	493.76	688.1	403.2	620.4974485	341.7747702	484.9980584	269.6124854	M6_p20	1.657142857	1.657142857	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.134	187	0	0	NA	3qG1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.62930361	sgMsh2	cell line
chr3	89266743	89266743	T	G	ENSMUST00000107462.7	3	ENSMUSG00000042737	missense	L/V	4	Dpm3	ENSMUST00000107462.7:c.10T>G	ENSMUSP00000103086.1:p.Leu4Val	H-2-Kb	8	4	1	VTQWLWGL	LTQWLWGL	SMM	283.622	1434.63	5.058	67	0.104	404.513	1559.675	3.856	6651.54	1488.78	1453.1	408.4	1434.630303	283.6220554	1666.249377	400.6268017	M6_p20	0.171428571	0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.111	67	0	0	NA	3qF1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.521288811	sgMsh2	cell line
chr3	127032016	127032016	T	C	ENSMUST00000182994.7	1	ENSMUSG00000032826	missense	T/A	445	Ank2	ENSMUST00000182994.7:c.1333A>G	ENSMUSP00000138089.1:p.Thr445Ala	H-2-Kb	9	11	2	IAAKLFPPL	ITAKLFPPL	NetMHCpan	24.7	26.4	1.069	222	0.113	78.474	101.297	1.291	52.54	47.02	26.4	24.7	151.3944658	109.9284236	150.0548372	116.211739	M6_p20	0.728571429	1.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.125	222	0	0	NA	3qG2	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.587036949	sgMsh2	cell line
chr3	89092053	89092053	C	T	ENSMUST00000200659.1	5	ENSMUSG00000105204	missense	G/S	410	Gm43738	ENSMUST00000200659.1:c.1228G>A	ENSMUSP00000142694.1:p.Gly410Ser	H-2-Kb	9	6	6	STLELSSPL	STLELGSPL	NetMHC	97.07	267.13	2.752	112	0.161	229.295	508.353	2.217	267.13	97.07	324.7	166.1	692.0062231	292.4893114	709.9863514	405.7420321	M6_p20	0.671428571	0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.166	112	0	0	NA	3qF1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.779585069	sgMsh2	cell line
chr3	138480720	138480720	A	G	ENSMUST00000029804.12	1	ENSMUSG00000005813	missense	Y/H	83	Metap1	ENSMUST00000029804.12:c.247T>C	ENSMUSP00000029804.8:p.Tyr83His	H-2-Kb	9	7	5	AGYRHTGKL	AGYRYTGKL	NetMHCpan	63.1	17.5	0.277	422	0.161	163.612	99.448	0.608	18.49	100.63	17.5	63.1	271.7127388	338.9299909	180.405594	226.5948317	M6_p20	-1.457142857	-1.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.169	422	0	0	NA	3qG3	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.793673955	sgMsh2	cell line
chr3	116605233	116605233	GT	G	ENSMUST00000198311.4	1	ENSMUSG00000027959	FS	F/X	55	Sass6	ENSMUST00000198311.4:c.168del	ENSMUSP00000143233.1:p.Leu57CysfsTer14	H-2-Kb	9	14	0	ITLLYLRKI	NA	NetMHCpan	81.7	NA	NA	56	0.179	238.592	NA	NA	NA	113.06	NA	81.7	NA	466.7775928	NA	364.1245828	M6_p20	0.885714286	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.186	56	0	0	NA	3qG1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.87351098	sgMsh2	cell line
chr3	80860236	80860236	AT	A	ENSMUST00000029654.14	1	ENSMUSG00000028020	FS	I/X	226	Glrb	ENSMUST00000029654.14:c.676del	ENSMUSP00000029654.8:p.Ile226LeufsTer37	H-2-Kb	9	6	6	VQLEKLLYL	VQLEKIALP	NetMHC	204.77	13999.81	68.368	133	0.15	281.513	8030.813	28.527	13999.81	204.77	16761.3	288.8	1256.348137	274.2268658	2061.816449	309.2074862	M6_p20	0.928571429	0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.131	133	0	0	NA	3qE3	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.615214723	sgMsh2	cell line
chr3	144696887	144696887	T	C	ENSMUST00000198254.4	1	ENSMUSG00000037062	missense	Q/R	264	Sh3glb1	ENSMUST00000198254.4:c.791A>G	ENSMUSP00000143312.1:p.Gln264Arg	H-2-Kb	9	8	4	QCYRYMLDL	QCYQYMLDL	NetMHCpan	222.6	360.9	1.621	385	0.143	289.053	391.838	1.356	522.7	322.1	360.9	222.6	422.7756832	393.6497682	260.7654204	256.0059151	M6_p20	-0.157142857	-0.157142857	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.152	385	0	0	NA	3qH2	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.71383693	sgMsh2	cell line
chr3	108464426	108464426	AT	A	ENSMUST00000106625.9	5	ENSMUSG00000040412	FS	M/X	711	5330417C22Rik	ENSMUST00000106625.9:c.2131del	ENSMUSP00000102236.3:p.Met711TrpfsTer38	H-2-Kb	9	38	0	SARLSSSPL	NA	SMM	306.274	NA	NA	51	0.176	447.926	NA	NA	NA	360.98	NA	1051.3	NA	306.2739079	NA	534.872168	M6_p20	-0.128571429	-0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.177	51	0	0	NA	3qF3	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.83124432	sgMsh2	cell line
chr3	87913145	87913145	CT	C	ENSMUST00000005017.14	1	ENSMUSG00000004897	FS	F/X	48	Hdgf	ENSMUST00000005017.14:c.150del	ENSMUSP00000005017.8:p.Phe50LeufsTer91	H-2-Kb	9	8	6	YQVFFLGPM	YQVFFFGTH	NetMHCpan	208	10598.6	50.955	244	0.156	455.442	6575.522	14.438	9408.99	400.25	10598.6	208	3742.053566	510.6343193	3063.726549	525.1096507	M6_p20	1.928571429	1.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1557	244	0	0	NA	3qF1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.731213224	sgMsh2	cell line
chr3	126981840	126981840	T	G	ENSMUST00000182078.8	5	ENSMUSG00000032826	missense	N/H	831	Ank2	ENSMUST00000182078.8:c.2491A>C	ENSMUSP00000138753.3:p.Asn831His	H-2-Kb	9	10	2	MHYLRYSLE	MNYLRYSLE	SMM	59.856	24.553	0.41	254	0.098	255.108	63.301	0.248	97.41	442.88	277.7	550	24.55330734	59.85631826	29.19106903	67.33641643	M6_p20	-0.542857143	-0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.11	254	0	0	NA	3qG2	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.516592515	sgMsh2	cell line
chr3	93443526	93443526	A	G	ENSMUST00000064257.5	5	ENSMUSG00000052415	missense	Q/R	91	Tchh	ENSMUST00000064257.5:c.272A>G	ENSMUSP00000069525.5:p.Gln91Arg	H-2-Kb	9	7	5	YALDRAAEL	YALDQAAEL	SMM	453.012	1368.075	3.02	130	0.169	474.117	1769.9	3.733	2087.83	556.82	1828.8	475.9	1368.075294	453.0123063	1710.999962	472.3348608	M6_p20	-0.042857143	-0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.168	130	0	0	NA	3qF2.1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.78897766	sgMsh2	cell line
chr3	138282520	138282520	G	A	ENSMUST00000004232.9	1	ENSMUSG00000074207	missense	S/N	115	Adh1	ENSMUST00000004232.9:c.344G>A	ENSMUSP00000004232.9:p.Ser115Asn	H-2-Kb	9	5	7	SNFCSRNDL	SNFCSRSDL	NetMHCpan	447.4	283	0.633	262	0.176	453.632	386.125	0.851	602.55	1034.69	283	447.4	391.8411118	448.8590645	380.4083139	458.4056903	M6_p20	-0.457142857	-0.457142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.167	262	0	0	NA	3qG3	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.784281364	sgMsh2	cell line
chr4	15976113	15976113	T	C	ENSMUST00000029879.14	1	ENSMUSG00000028224	missense	V/A	358	Nbn	ENSMUST00000029879.14:c.1073T>C	ENSMUSP00000029879.8:p.Val358Ala	H-2-Db	9	8	4	SAPANMTTY	SAPVNMTTY	NetMHC	96.63	49.38	0.511	75	0.16	191.873	113.819	0.593	49.38	96.63	233	314.7	133.5426531	235.2989559	94.09574822	148.4465128	M6_p20	-0.585714286	-0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.18	75	0	0	NA	4qA2	chr4-3184901-60740166	3	2	1	0.93	4.367554902	NA	1	0.845333207	sgMsh2	cell line
chr4	70433397	70433397	A	G	ENSMUST00000107359.8	1	ENSMUSG00000039270	missense	S/P	496	Megf9	ENSMUST00000107359.8:c.1486T>C	ENSMUSP00000102982.2:p.Ser496Pro	H-2-Db	9	9	3	SSPENSTSA	SSSENSTSA	NetMHC	122.38	4730.47	38.654	117	0.316	327.502	1353.736	4.134	4730.47	122.38	1651.7	300.5	723.8023686	354.5030696	1055.77166	543.9638013	M6_p20	-1.3	-1.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.32	117	0	0	NA	4qC2	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr3	159515518	159515518	A	T	ENSMUST00000120272.7	1	ENSMUSG00000028175	missense	K/M	162	Depdc1a	ENSMUST00000120272.7:c.485A>T	ENSMUSP00000113216.1:p.Lys162Met	H-2-Db	9	4	8	FSQENTEMI	FSQENTEKI	NetMHCpan	102.5	156.8	1.53	196	0.148	139.828	186.102	1.331	162.01	143.12	156.8	102.5	210.1938476	139.8363244	224.6828893	139.8202261	M6_p20	-1.185714286	-1.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.146	196	0	0	NA	3qH4	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.685659157	sgMsh2	cell line
chr4	101137712	101137712	T	C	ENSMUST00000038463.14	1	ENSMUSG00000035275	missense	V/A	544	Raver2	ENSMUST00000038463.14:c.1631T>C	ENSMUSP00000043142.8:p.Val544Ala	H-2-Db	9	11	1	AASKNQTSL	VASKNQTSL	SMM	116.043	148.806	1.282	87	0.149	127.192	176.848	1.39	287.14	241.2	174.4	116.8	148.8058483	116.0432811	179.295752	137.5846553	M6_p20	-1.342857143	-1.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.143	87	0	0	NA	4qC6	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.67157027	sgMsh2	cell line
chr4	70272739	70272739	CT	C	ENSMUST00000144099.7	1	ENSMUSG00000039298	FS	Q/X	1023	Cdk5rap2	ENSMUST00000144099.7:c.3068del	ENSMUSP00000119891.1:p.Gln1023ArgfsTer56	H-2-Db	9	32	0	WTVTNIQAL	NA	NetMHCpan	206.8	NA	NA	108	0.324	342.414	NA	NA	NA	288.03	NA	206.8	NA	582.9348234	NA	396.7984801	M6_p20	0.942857143	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.328	108	0	0	NA	4qC2	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr4	98973478	98973478	A	G	ENSMUST00000030286.13	5	ENSMUSG00000028556	missense	V/A	1334	Dock7	ENSMUST00000030286.13:c.4001T>C	ENSMUSP00000030286.7:p.Val1334Ala	H-2-Db	9	10	2	WALKNADET	WVLKNADET	SMMPMBEC	178.061	1136.501	6.383	92	0.315	273.241	2878.792	10.536	7340.81	297.24	4163.1	531.5	1594.483392	249.2412955	1136.501465	178.0614887	M6_p20	-1.357142857	-0.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.304	92	0	0	NA	4qC6	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr4	45307923	45307923	CT	C	ENSMUST00000044673.8	1	ENSMUSG00000035601	FS	L/X	203	Trmt10b	ENSMUST00000044673.8:c.612del	ENSMUSP00000041052.2:p.Pro205LeufsTer8	H-2-Db	9	9	5	FSLFLWKPL	FSLFPLETL	SMM	212.628	545.281	2.564	302	0.066	281.074	540.89	1.924	345.62	310.63	884.2	463.6	545.2805415	212.6277776	536.5003381	251.518538	M6_p20	1.114285714	1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.059	302	0	0	NA	4qB1	chr4-3184901-60740166	3	2	1	0.93	4.367554902	NA	1	0.27708144	sgMsh2	cell line
chr3	155137385	155137385	AT	A	ENSMUST00000194376.1	1	ENSMUSG00000028182	FS	N/X	298	Lrriq3	ENSMUST00000194376.1:c.897del	ENSMUSP00000142127.1:p.His300ThrfsTer32	H-2-Db	9	7	7	KLWVNFTEV	NA	SMMPMBEC	272.001	NA	NA	270	0.141	443.324	NA	NA	NA	666.64	NA	596.5	NA	290.1482797	NA	272.0006864	M6_p20	0.371428571	0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.14	270	0	0	NA	3qH4	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.657481383	sgMsh2	cell line
chr4	15976113	15976113	T	C	ENSMUST00000029879.14	1	ENSMUSG00000028224	missense	V/A	358	Nbn	ENSMUST00000029879.14:c.1073T>C	ENSMUSP00000029879.8:p.Val358Ala	H-2-Db	10	8	4	SAPANMTTYV	SAPVNMTTYV	NetMHC	5.4	4.11	0.761	75	0.16	291.09	280.708	0.964	4.11	5.4	16.6	22.1	544.816184	560.0799166	587.0431165	624.6978338	M6_p20	0.242857143	0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.18	75	0	0	NA	4qA2	chr4-3184901-60740166	3	2	1	0.93	4.367554902	NA	1	0.845333207	sgMsh2	cell line
chr4	45307923	45307923	CT	C	ENSMUST00000044673.8	1	ENSMUSG00000035601	FS	L/X	203	Trmt10b	ENSMUST00000044673.8:c.612del	ENSMUSP00000041052.2:p.Pro205LeufsTer8	H-2-Kb	8	10	4	SLFLWKPL	SLFPLETL	NetMHCpan	45.9	278.7	6.072	302	0.066	65.889	861.472	13.075	1564.85	78.53	278.7	45.9	803.0452175	78.47656766	919.8986892	53.30156983	M6_p20	1.114285714	1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.059	302	0	0	NA	4qB1	chr4-3184901-60740166	3	2	1	0.93	4.367554902	NA	1	0.27708144	sgMsh2	cell line
chr3	146913305	146913305	GC	G	ENSMUST00000037942.10	5	ENSMUSG00000036745	FS	P/X	322	Ttll7	ENSMUST00000037942.10:c.969del	ENSMUSP00000043753.7:p.Ser325AlafsTer48	H-2-Kb	8	32	0	SSHGFWRL	NA	NetMHCpan	33.2	NA	NA	68	0.206	41.759	NA	NA	NA	103.94	NA	33.2	NA	42.04748265	NA	41.47056956	M6_p20	-0.457142857	-0.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.19	68	0	0	NA	3qH2	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.892296163	sgMsh2	cell line
chr4	19366491	19366491	C	T	ENSMUST00000102999.1	1	ENSMUSG00000056494	missense	P/L	184	Cngb3	ENSMUST00000102999.1:c.551C>T	ENSMUSP00000100064.1:p.Pro184Leu	H-2-Kb	8	7	5	FSFKLQRV	FSFKPQRV	NetMHC	132.45	670.28	5.061	85	0.176	162.332	578.758	3.565	670.28	132.45	886.1	178.2	386.1357391	153.3698525	487.2367077	171.2931516	M6_p20	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.195	85	0	0	NA	4qA3	chr4-3184901-60740166	3	2	1	0.93	4.367554902	NA	1	0.915777641	sgMsh2	cell line
chr3	148837574	148837574	C	A	ENSMUST00000197567.4	2	ENSMUSG00000028184	missense	R/M	838	Adgrl2	ENSMUST00000197567.4:c.2513G>T	ENSMUSP00000143626.1:p.Arg838Met	H-2-Kb	8	4	8	FAILMAHM	FAILMAHR	NetMHC	134.67	11710.49	86.957	209	0.115	323.503	7529.07	23.274	11710.49	134.67	13904.9	232.3	2628.693795	471.7805149	3347.649647	414.7056956	M6_p20	1.785714286	1.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.12	209	0	0	NA	3qH3	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.563555471	sgMsh2	cell line
chr4	70272739	70272739	CT	C	ENSMUST00000144099.7	1	ENSMUSG00000039298	FS	Q/X	1023	Cdk5rap2	ENSMUST00000144099.7:c.3068del	ENSMUSP00000119891.1:p.Gln1023ArgfsTer56	H-2-Kb	8	42	0	SILKSVHL	NA	NetMHC	164.45	NA	NA	108	0.324	314.914	NA	NA	NA	164.45	NA	339.6	NA	290.2284617	NA	340.9887101	M6_p20	1.2	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.328	108	0	0	NA	4qC2	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr3	146584619	146584619	A	C	ENSMUST00000200633.1	1	ENSMUSG00000028185	missense	L/R	199	Dnase2b	ENSMUST00000200633.1:c.596T>G	ENSMUSP00000142872.1:p.Leu199Arg	H-2-Kb	8	5	7	STFHWKRI	STFHWKLI	SMMPMBEC	144.457	341.775	2.366	140	0.064	192.819	354.532	1.839	367.29	243.23	186.2	161.9	499.7352678	223.738128	341.7747702	144.4574685	M6_p20	-0.842857143	-0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.082	140	0	0	NA	3qH2	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.385096239	sgMsh2	cell line
chr4	20064005	20064005	A	C	ENSMUST00000098242.3	1	ENSMUSG00000073987	missense	K/T	234	Ggh	ENSMUST00000098242.3:c.701A>C	ENSMUSP00000095843.3:p.Lys234Thr	H-2-Kb	8	10	2	FTYPVYAV	FKYPVYAV	SMM	232.135	1272.741	5.483	167	0.114	311.21	3820.621	12.277	5414.14	319.82	5562.8	302.6	1272.740898	232.1346655	2227.101447	387.9180607	M6_p20	0.757142857	0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.114	167	0	0	NA	4qA3	chr4-3184901-60740166	3	2	1	0.93	4.367554902	NA	1	0.535377698	sgMsh2	cell line
chr4	94569414	94569414	CT	C	ENSMUST00000107107.8	1	ENSMUSG00000028577	FS	K/X	773	Plaa	ENSMUST00000107107.8:c.2318del	ENSMUSP00000102724.2:p.Lys773SerfsTer11	H-2-Kb	8	12	0	MSPYQSQL	NA	NetMHC	375.41	NA	NA	106	0.094	396.675	NA	NA	NA	375.41	NA	381.5	NA	411.8508816	NA	596.6779652	M6_p20	-1.1	-1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.101	106	0	0	NA	4qC5	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.474325855	sgMsh2	cell line
chr4	52995837	52995837	C	T	ENSMUST00000188045.6	1	ENSMUSG00000015242	missense	A/V	95	Nipsnap3a	ENSMUST00000188045.6:c.284C>T	ENSMUSP00000140727.1:p.Ala95Val	H-2-Kb	8	10	2	RVAVYKAL	RAAVYKAL	SMM	294.266	289.561	0.984	162	0.29	307.769	334.747	1.088	327.72	438.89	367.5	299.5	289.5609548	294.2659418	341.7747702	316.0385059	M6_p20	1.514285714	1.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.304	162	0	0	NA	4qB2	chr4-3184901-60740166	3	2	1	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr3	146650711	146650711	TG	T	ENSMUST00000049703.5	1	ENSMUSG00000090202	FS	P/X	147	4930503B20Rik	ENSMUST00000049703.5:c.441del	ENSMUSP00000051453.5:p.Ile148SerfsTer28	H-2-Kb	8	13	0	WTQDFLRL	NA	SMM	151.614	NA	NA	130	0.2	313.889	NA	NA	NA	463.44	NA	520.5	NA	151.6142424	NA	164.3387578	M6_p20	-0.257142857	-0.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.195	130	0	0	NA	3qH2	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.915777641	sgMsh2	cell line
chr4	41121239	41121239	A	G	ENSMUST00000030138.8	1	ENSMUSG00000028430	missense	V/A	339	Nol6	ENSMUST00000030138.8:c.1016T>C	ENSMUSP00000030138.8:p.Val339Ala	H-2-Kb	8	6	6	VALLKAWL	VALLKVWL	SMM	374.749	1083.278	2.891	88	0.261	406.808	1087.033	2.672	1746.99	486.53	971.2	435.4	1083.278191	374.7485835	1090.787117	378.2160895	M6_p20	1.457142857	1.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.323	88	0	0	NA	4qA5	chr4-3184901-60740166	3	2	1	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr4	53083890	53083890	A	G	ENSMUST00000030010.3	1	ENSMUSG00000015243	missense	W/R	648	Abca1	ENSMUST00000030010.3:c.1942T>C	ENSMUSP00000030010.3:p.Trp648Arg	H-2-Kb	8	11	1	RIYSVAVI	WIYSVAVI	SMM	334.765	451.586	1.349	89	0.146	400.859	795.858	1.985	1140.13	619.27	1407.1	446.3	451.5855118	334.7649647	409.0157201	355.4184757	M6_p20	2.442857143	2.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.167	89	0	0	NA	4qB2	chr4-3184901-60740166	3	2	1	0.93	4.367554902	NA	1	0.784281364	sgMsh2	cell line
chr4	58486647	58486647	A	G	ENSMUST00000107571.7	5	ENSMUSG00000038668	missense	V/A	208	Lpar1	ENSMUST00000107571.7:c.623T>C	ENSMUSP00000103197.1:p.Val208Ala	H-2-Kb	8	11	1	AFWAIFNL	VFWAIFNL	SMMPMBEC	256.886	74.945	0.292	143	0.063	395.615	131.289	0.332	180.51	754.4	178.1	473	84.47729517	318.2291802	74.94454029	256.8857419	M6_p20	1.614285714	1.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.079	143	0	0	NA	4qB3	chr4-3184901-60740166	3	2	1	0.93	4.367554902	NA	1	0.371007352	sgMsh2	cell line
chr3	146913305	146913305	GC	G	ENSMUST00000037942.10	5	ENSMUSG00000036745	FS	P/X	322	Ttll7	ENSMUST00000037942.10:c.969del	ENSMUSP00000043753.7:p.Ser325AlafsTer48	H-2-Kb	9	32	0	SSHGFWRLI	NA	NetMHC	88.95	NA	NA	68	0.206	163.427	NA	NA	NA	88.95	NA	124.5	NA	202.3531643	NA	250.1785091	M6_p20	0.3	0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.19	68	0	0	NA	3qH2	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.892296163	sgMsh2	cell line
chr4	70272739	70272739	CT	C	ENSMUST00000144099.7	1	ENSMUSG00000039298	FS	Q/X	1023	Cdk5rap2	ENSMUST00000144099.7:c.3068del	ENSMUSP00000119891.1:p.Gln1023ArgfsTer56	H-2-Kb	9	50	0	MTLPYYQHA	NA	NetMHC	103.06	NA	NA	108	0.324	432.025	NA	NA	NA	103.06	NA	247.1	NA	695.2003787	NA	616.9500447	M6_p20	-0.757142857	-0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.328	108	0	0	NA	4qC2	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr4	58486647	58486647	A	G	ENSMUST00000107571.7	5	ENSMUSG00000038668	missense	V/A	208	Lpar1	ENSMUST00000107571.7:c.623T>C	ENSMUSP00000103197.1:p.Val208Ala	H-2-Kb	9	10	2	LAFWAIFNL	LVFWAIFNL	NetMHCpan	87.5	156.6	1.79	143	0.063	234.249	267.626	1.142	173.75	147.05	156.6	87.5	361.5014137	321.4474612	438.783209	379.5333991	M6_p20	1.614285714	2.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.079	143	0	0	NA	4qB3	chr4-3184901-60740166	3	2	1	0.93	4.367554902	NA	1	0.371007352	sgMsh2	cell line
chr3	157312902	157312902	C	T	ENSMUST00000074015.10	1	ENSMUSG00000040037	missense	L/F	347	Negr1	ENSMUST00000074015.10:c.1039C>T	ENSMUSP00000073664.4:p.Leu347Phe	H-2-Kb	9	12	9	IFYLKNAIF	IFYLKNAIL	SMM	146.592	86.918	0.593	106	0.113	161.23	88.179	0.547	89.44	172.75	131.7	353.4	86.91805512	146.5919088	86.54659777	149.7097207	M6_p20	0.6	0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.124	106	0	0	NA	3qH4	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.582340654	sgMsh2	cell line
chr4	70272739	70272739	CT	C	ENSMUST00000144099.7	1	ENSMUSG00000039298	FS	Q/X	1023	Cdk5rap2	ENSMUST00000144099.7:c.3068del	ENSMUSP00000119891.1:p.Gln1023ArgfsTer56	H-2-Kb	9	41	0	RSILKSVHL	NA	NetMHC	173.88	NA	NA	108	0.324	296.765	NA	NA	NA	173.88	NA	227	NA	366.5303993	NA	410.4403034	M6_p20	1.2	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.328	108	0	0	NA	4qC2	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr4	45307923	45307923	CT	C	ENSMUST00000044673.8	1	ENSMUSG00000035601	FS	L/X	203	Trmt10b	ENSMUST00000044673.8:c.612del	ENSMUSP00000041052.2:p.Pro205LeufsTer8	H-2-Kb	9	9	5	FSLFLWKPL	FSLFPLETL	NetMHCpan	127.2	1483.2	11.66	302	0.066	215.539	984.497	4.568	761.94	209.13	1483.2	127.2	889.4263671	253.577082	1079.567993	221.9473684	M6_p20	1.114285714	1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.059	302	0	0	NA	4qB1	chr4-3184901-60740166	3	2	1	0.93	4.367554902	NA	1	0.27708144	sgMsh2	cell line
chr4	47405561	47405561	T	C	ENSMUST00000007757.14	1	ENSMUSG00000007613	missense	I/T	388	Tgfbr1	ENSMUST00000007757.14:c.1163T>C	ENSMUSP00000007757.8:p.Ile388Thr	H-2-Kb	9	11	1	TNMKHFESF	INMKHFESF	SMMPMBEC	178.752	107.957	0.604	272	0.129	231.064	113.058	0.489	118.16	274.51	88.1	243.8	127.382568	218.3282833	107.9567993	178.7516256	M6_p20	-0.557142857	-0.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.137	272	0	0	NA	4qB1	chr4-3184901-60740166	3	2	1	0.93	4.367554902	NA	1	0.643392496	sgMsh2	cell line
chr4	94569414	94569414	CT	C	ENSMUST00000107107.8	1	ENSMUSG00000028577	FS	K/X	773	Plaa	ENSMUST00000107107.8:c.2318del	ENSMUSP00000102724.2:p.Lys773SerfsTer11	H-2-Kb	9	11	1	SMSPYQSQL	NA	NetMHCpan	192.6	NA	NA	106	0.094	306.356	NA	NA	NA	275.23	NA	192.6	NA	342.8546153	NA	337.4815227	M6_p20	-1.1	-0.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.101	106	0	0	NA	4qC5	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.474325855	sgMsh2	cell line
chr4	58486647	58486647	A	G	ENSMUST00000107571.7	5	ENSMUSG00000038668	missense	V/A	208	Lpar1	ENSMUST00000107571.7:c.623T>C	ENSMUSP00000103197.1:p.Val208Ala	H-2-Kb	9	8	4	SYLAFWAIF	SYLVFWAIF	SMM	190.594	120.534	0.632	143	0.063	249.569	190.076	0.762	218.25	277.19	797	406.4	120.5341196	190.5943402	161.9011748	221.9473684	M6_p20	2.371428571	2.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.079	143	0	0	NA	4qB3	chr4-3184901-60740166	3	2	1	0.93	4.367554902	NA	1	0.371007352	sgMsh2	cell line
chr4	106407959	106407959	A	T	ENSMUST00000094933.4	5	ENSMUSG00000028514	missense	E/V	1762	Usp24	ENSMUST00000094933.4:c.5285A>T	ENSMUSP00000092538.4:p.Glu1762Val	H-2-Kb	9	3	9	KIFKMWNKV	KIFKMWNKE	NetMHC	304.04	5185.09	17.054	194	0.088	368.529	2979.874	8.086	5185.09	304.04	11986.2	414.7	774.6579817	382.0410236	665.6562285	355.017695	M6_p20	-0.471428571	-0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.096	194	0	0	NA	4qC7	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.450844377	sgMsh2	cell line
chr3	155137385	155137385	AT	A	ENSMUST00000194376.1	1	ENSMUSG00000028182	FS	N/X	298	Lrriq3	ENSMUST00000194376.1:c.897del	ENSMUSP00000142127.1:p.His300ThrfsTer32	H-2-Kb	9	21	0	LTFHQYKGI	NA	NetMHCpan	249.3	NA	NA	270	0.141	334.616	NA	NA	NA	317.47	NA	249.3	NA	377.6678362	NA	351.7628732	M6_p20	-0.714285714	-0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.14	270	0	0	NA	3qH4	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.657481383	sgMsh2	cell line
chr3	146650711	146650711	TG	T	ENSMUST00000049703.5	1	ENSMUSG00000090202	FS	P/X	147	4930503B20Rik	ENSMUST00000049703.5:c.441del	ENSMUSP00000051453.5:p.Ile148SerfsTer28	H-2-Kb	9	30	0	MTLKHLYHI	NA	NetMHCpan	217.1	NA	NA	130	0.2	488.474	NA	NA	NA	389.31	NA	217.1	NA	587.6381732	NA	626.9746764	M6_p20	0.071428571	0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.195	130	0	0	NA	3qH2	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.915777641	sgMsh2	cell line
chr4	41121239	41121239	A	G	ENSMUST00000030138.8	1	ENSMUSG00000028430	missense	V/A	339	Nol6	ENSMUST00000030138.8:c.1016T>C	ENSMUSP00000030138.8:p.Val339Ala	H-2-Kb	9	10	2	KAWLRQREL	KVWLRQREL	NetMHC	411.44	379.85	0.923	88	0.261	461.856	516.33	1.118	379.85	411.44	523.2	470.7	509.4598929	453.0123063	594.6343592	514.3396441	M6_p20	-1.328571429	-1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.323	88	0	0	NA	4qA5	chr4-3184901-60740166	3	2	1	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr3	155137385	155137385	AT	A	ENSMUST00000194376.1	1	ENSMUSG00000028182	FS	N/X	298	Lrriq3	ENSMUST00000194376.1:c.897del	ENSMUSP00000142127.1:p.His300ThrfsTer32	H-2-Kb	9	10	4	VNFTEVGWM	NA	SMMPMBEC	346.937	NA	NA	270	0.141	357.03	NA	NA	NA	962.72	NA	361.6	NA	352.4601324	NA	346.9365057	M6_p20	0.485714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.14	270	0	0	NA	3qH4	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.657481383	sgMsh2	cell line
chr4	136554214	136554214	T	A	ENSMUST00000105847.7	5	ENSMUSG00000036940	missense	K/M	682	Kdm1a	ENSMUST00000105847.7:c.2045A>T	ENSMUSP00000101473.1:p.Lys682Met	H-2-Db	9	6	6	FGNLNMVVL	FGNLNKVVL	NetMHC	15.68	50.61	3.228	133	0.06	76.126	173.018	2.273	50.61	15.68	144.4	54.4	281.5917975	138.8736979	201.6368945	97.8520661	M6_p20	1.557142857	1.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.072	133	0	0	NA	4qD3	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.338133283	sgMsh2	cell line
chr4	155268251	155268251	T	G	ENSMUST00000030922.14	1	ENSMUSG00000029053	missense	K/T	473	Prkcz	ENSMUST00000030922.14:c.1418A>C	ENSMUSP00000030922.7:p.Lys473Thr	H-2-Db	9	5	7	FQVILETPI	FQVILEKPI	NetMHC	96.91	1744.74	18.004	147	0.15	220.135	1380.05	6.269	1744.74	96.91	2345.3	278.3	1015.359882	224.7087583	992.1332393	215.5609059	M6_p20	1.6	1.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.151	147	0	0	NA	4qE2	chr4-147681972-156223608	3	2	1	0.93	4.367554902	NA	1	0.709140635	sgMsh2	cell line
chr4	148013719	148013719	C	A	ENSMUST00000030879.11	1	ENSMUSG00000029016	missense	G/C	585	Clcn6	ENSMUST00000030879.11:c.1753G>T	ENSMUSP00000030879.5:p.Gly585Cys	H-2-Kb	8	7	5	IGLRCVPL	IGLRGVPL	NetMHC	43.77	214.71	4.905	84	0.155	63.858	210.562	3.297	214.71	43.77	245.3	104.6	206.414404	71.90183929	146.1302072	55.81359543	M6_p20	1.114285714	1.214285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.148	84	0	0	NA	4qE2	chr4-147681972-156223608	3	2	1	0.93	4.367554902	NA	1	0.695051748	sgMsh2	cell line
chr4	135960883	135960883	T	C	ENSMUST00000030432.7	1	ENSMUSG00000028672	missense	M/T	284	Hmgcl	ENSMUST00000030432.7:c.851T>C	ENSMUSP00000030432.7:p.Met284Thr	H-2-Kb	8	8	4	LVYTLNGL	LVYMLNGL	NetMHCpan	43.1	32.9	0.763	89	0.146	89.42	80.399	0.899	34.4	48.9	32.9	43.1	164.7175978	141.8208226	126.3979412	129.9391436	M6_p20	0.842857143	0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.166	89	0	0	NA	4qD3	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.779585069	sgMsh2	cell line
chr4	139640665	139640665	A	G	ENSMUST00000039818.9	1	ENSMUSG00000028737	missense	T/A	306	Aldh4a1	ENSMUST00000039818.9:c.916A>G	ENSMUSP00000043821.9:p.Thr306Ala	H-2-Kb	8	8	4	RFRAFPRL	RFRTFPRL	SMM	54.293	53.179	0.979	80	0.087	87.052	74.246	0.853	78.71	97.59	160.4	151.2	53.17897962	54.29252	69.78145169	76.51384027	M6_p20	0.085714286	0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.097	80	0	0	NA	4qD3	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.455540673	sgMsh2	cell line
chr4	115068554	115068554	TC	T	ENSMUST00000030489.8	1	ENSMUSG00000028717	FS	I/X	273	Tal1	ENSMUST00000030489.8:c.824del	ENSMUSP00000030489.2:p.Pro275LeufsTer82	H-2-Kb	8	77	0	QAGAFRPL	NA	NetMHC	137.79	NA	NA	21	0.238	228.578	NA	NA	NA	137.79	NA	588.8	NA	207.8452003	NA	249.310173	M6_p20	0.528571429	0.528571429	TRUE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2381	21	0	0	NA	4qD1	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr4	118709712	118709712	T	C	ENSMUST00000215117.2	5	ENSMUSG00000046790	missense	Y/H	102	Olfr1341	ENSMUST00000215117.2:c.304T>C	ENSMUSP00000149466.1:p.Tyr102His	H-2-Kb	8	7	5	VAQMHIFL	VAQMYIFL	SMM	148.163	38.26	0.258	162	0.185	165.39	32.63	0.197	19.66	154.18	27	176.6	38.25956254	148.1630809	44.02911945	190.4320313	M6_p20	1.157142857	1.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.175	162	0	0	NA	4qD2.1	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.821851729	sgMsh2	cell line
chr4	120886945	120886945	C	T	ENSMUST00000071093.8	1	ENSMUSG00000032890	missense	P/L	124	Rims3	ENSMUST00000071093.8:c.371C>T	ENSMUSP00000068178.2:p.Pro124Leu	H-2-Kb	8	7	5	TFIFLTRL	TFIFPTRL	NetMHCpan	49.6	106	2.137	63	0.111	194.02	549.467	2.832	531.73	162.75	106	49.6	567.204934	225.2890066	685.0779666	240.8463117	M6_p20	1.785714286	1.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.112	63	0	0	NA	4qD2.2	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.525985106	sgMsh2	cell line
chr4	155069021	155069021	T	G	ENSMUST00000103180.3	1	ENSMUSG00000029047	missense	I/M	182	Pex10	ENSMUST00000103180.3:c.546T>G	ENSMUSP00000099469.3:p.Ile182Met	H-2-Kb	8	11	1	MHGTFYHL	IHGTFYHL	SMMPMBEC	155.503	71.571	0.46	103	0.117	235.779	80.872	0.343	80.51	309.1	169.9	352	81.23440428	162.4575876	71.57148034	155.5034397	M6_p20	-0.314285714	-0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.124	103	0	0	NA	4qE2	chr4-147681972-156223608	3	2	1	0.93	4.367554902	NA	1	0.582340654	sgMsh2	cell line
chr4	150897465	150897465	T	A	ENSMUST00000105674.7	5	ENSMUSG00000028964	missense	Y/F	139	Park7	ENSMUST00000105674.7:c.416A>T	ENSMUSP00000101299.1:p.Tyr139Phe	H-2-Kb	8	11	1	FSYSESRV	YSYSESRV	SMMPMBEC	135.75	171.688	1.265	35	0.171	244.427	279.259	1.143	332.19	316.77	385.1	417.5	226.3288934	172.0838049	171.6880231	135.7500506	M6_p20	-1.071428571	-1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.217	35	0	0	NA	4qE2	chr4-147681972-156223608	3	2	1	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr4	155069021	155069021	T	G	ENSMUST00000103180.3	1	ENSMUSG00000029047	missense	I/M	182	Pex10	ENSMUST00000103180.3:c.546T>G	ENSMUSP00000099469.3:p.Ile182Met	H-2-Kb	8	6	6	VAWFYMHG	VAWFYIHG	SMM	88.052	124.377	1.413	103	0.117	255.688	481.612	1.884	1556.42	599.87	818.1	399.5	124.3769779	88.05215715	145.1242539	111.8767908	M6_p20	0.1	0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.124	103	0	0	NA	4qE2	chr4-147681972-156223608	3	2	1	0.93	4.367554902	NA	1	0.582340654	sgMsh2	cell line
chr4	145110843	145110843	A	G	ENSMUST00000036579.13	5	ENSMUSG00000020220	missense	L/P	2730	Vps13d	ENSMUST00000036579.13:c.8189T>C	ENSMUSP00000043240.7:p.Leu2730Pro	H-2-Kb	8	9	3	AEPTFSRL	AELTFSRL	SMMPMBEC	241.402	93.916	0.389	59	0.237	485.047	174.205	0.359	243.76	724.77	1066.5	3183.6	104.6501849	245.323979	93.91608928	241.4015198	M6_p20	-0.642857143	-0.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.242	59	0	0	NA	4qE1	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr4	143895385	143895385	T	C	ENSMUST00000105767.1	5	ENSMUSG00000078512	missense	I/V	467	Pramef6	ENSMUST00000105767.1:c.1399A>G	ENSMUSP00000101393.1:p.Ile467Val	H-2-Kb	9	13	2	CVYSFVGNI	CIYSFVGNI	NetMHC	23.45	22.06	0.941	222	0.095	90.759	96.799	1.067	22.06	23.45	42.9	35.6	150.6988715	145.9183802	252.4933823	247.8848587	M6_p20	0.785714286	1.6	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.091	222	0	0	NA	4qE1	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.427362899	sgMsh2	cell line
chr4	106753796	106753796	A	C	ENSMUST00000065253.12	1	ENSMUSG00000034853	missense	V/G	406	Acot11	ENSMUST00000065253.12:c.1217T>G	ENSMUSP00000069636.6:p.Val406Gly	H-2-Kb	9	10	2	QGYLSYYNV	QVYLSYYNV	NetMHC	26.12	27.78	1.064	85	0.094	125.251	83.323	0.665	27.78	26.12	75	57.7	91.64525838	192.8013187	171.0999962	311.3508101	M6_p20	-0.028571429	-0.028571429	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.111	85	0	0	NA	4qC7	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.521288811	sgMsh2	cell line
chr4	120886945	120886945	C	T	ENSMUST00000071093.8	1	ENSMUSG00000032890	missense	P/L	124	Rims3	ENSMUST00000071093.8:c.371C>T	ENSMUSP00000068178.2:p.Pro124Leu	H-2-Kb	9	6	6	GTFIFLTRL	GTFIFPTRL	NetMHCpan	28.1	39.6	1.409	63	0.111	60.436	144.364	2.389	86.31	36.1	39.6	28.1	215.332707	91.43448014	202.4184057	84.77152578	M6_p20	1.785714286	1.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.112	63	0	0	NA	4qD2.2	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.525985106	sgMsh2	cell line
chr4	155069021	155069021	T	G	ENSMUST00000103180.3	1	ENSMUSG00000029047	missense	I/M	182	Pex10	ENSMUST00000103180.3:c.546T>G	ENSMUSP00000099469.3:p.Ile182Met	H-2-Kb	9	10	2	YMHGTFYHL	YIHGTFYHL	NetMHC	159.62	219.23	1.373	103	0.117	188.296	355.71	1.889	219.23	159.62	277.8	182.9	433.6206938	193.6912491	687.4640623	332.0855664	M6_p20	-0.314285714	-0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.124	103	0	0	NA	4qE2	chr4-147681972-156223608	3	2	1	0.93	4.367554902	NA	1	0.582340654	sgMsh2	cell line
chr4	121082857	121082857	TA	T	ENSMUST00000058754.8	1	ENSMUSG00000043207	FS	F/X	197	Zmpste24	ENSMUST00000058754.8:c.591del	ENSMUSP00000053900.2:p.Phe197LeufsTer9	H-2-Kb	9	5	7	IGGDYFLYM	IGGDYFFIY	NetMHCpan	84.1	5310.6	63.146	52	0.288	202.807	3020.239	14.892	6860.81	204.59	5310.6	84.1	716.3248211	250.6744092	729.8775406	201.0249672	M6_p20	0.285714286	0.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.29	52	0	0	NA	4qD2.2	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr4	155069021	155069021	T	G	ENSMUST00000103180.3	1	ENSMUSG00000029047	missense	I/M	182	Pex10	ENSMUST00000103180.3:c.546T>G	ENSMUSP00000099469.3:p.Ile182Met	H-2-Kb	9	7	5	AWFYMHGTF	AWFYIHGTF	SMM	130.05	341.279	2.624	103	0.117	193.94	435.221	2.244	455.25	209.54	926.2	545.8	341.2793414	130.0498932	415.1929781	178.3405083	M6_p20	0.271428571	0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.124	103	0	0	NA	4qE2	chr4-147681972-156223608	3	2	1	0.93	4.367554902	NA	1	0.582340654	sgMsh2	cell line
chr4	120162006	120162006	T	G	ENSMUST00000030384.4	1	ENSMUSG00000028635	missense	I/S	64	Edn2	ENSMUST00000030384.4:c.191T>G	ENSMUSP00000030384.4:p.Ile64Ser	H-2-Kb	9	4	8	VYFCHLDSI	VYFCHLDII	SMMPMBEC	195.997	246.178	1.256	80	0.212	229.431	322.023	1.404	397.38	243.53	800.5	302.1	246.6664026	215.332707	246.1784313	195.99726	M6_p20	0.871428571	0.871428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.234	80	0	0	NA	4qD2.1	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr4	143895385	143895385	T	C	ENSMUST00000105767.1	5	ENSMUSG00000078512	missense	I/V	467	Pramef6	ENSMUST00000105767.1:c.1399A>G	ENSMUSP00000101393.1:p.Ile467Val	H-2-Kb	9	10	5	RNFCVYSFV	RNFCIYSFV	NetMHCpan	85.7	73	0.852	222	0.095	357.494	308.946	0.864	234.97	248.06	73	85.7	382.9217191	472.1826226	388.3738676	466.9280884	M6_p20	2.057142857	2.057142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.091	222	0	0	NA	4qE1	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.427362899	sgMsh2	cell line
chr4	143726070	143726070	A	G	ENSMUST00000078695.4	5	ENSMUSG00000046435	missense	T/A	24	Gm13078	ENSMUST00000078695.4:c.70A>G	ENSMUSP00000077761.4:p.Thr24Ala	H-2-Kb	9	10	2	LAISALPNL	LTISALPNL	NetMHCpan	254.7	300.1	1.178	111	0.459	387.777	507.146	1.308	378.8	314.12	300.1	254.7	635.4918716	461.4344339	904.1698059	700.2449734	M6_p20	1.142857143	1.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.458	111	0	0	NA	4qE1	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	2	1	sgMsh2	cell line
chr4	139640665	139640665	A	G	ENSMUST00000039818.9	1	ENSMUSG00000028737	missense	T/A	306	Aldh4a1	ENSMUST00000039818.9:c.916A>G	ENSMUSP00000043821.9:p.Thr306Ala	H-2-Kb	9	4	8	QNLDRFRAF	QNLDRFRTF	SMM	226.001	239.944	1.062	80	0.087	312.457	354.948	1.136	385.37	323.44	1098.6	1301.5	239.9440583	226.0008122	324.526376	301.4740949	M6_p20	-0.185714286	-0.185714286	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.097	80	0	0	NA	4qD3	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.455540673	sgMsh2	cell line
chr4	118709712	118709712	T	C	ENSMUST00000215117.2	5	ENSMUSG00000046790	missense	Y/H	102	Olfr1341	ENSMUST00000215117.2:c.304T>C	ENSMUSP00000149466.1:p.Tyr102His	H-2-Kb	9	7	5	VAQMHIFLV	VAQMYIFLV	NetMHC	354.8	239.97	0.676	162	0.185	498.042	380.269	0.764	239.97	354.8	382	584.1	378.5384504	472.1826226	417.1094219	523.901932	M6_p20	1.5	1.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.175	162	0	0	NA	4qD2.1	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.821851729	sgMsh2	cell line
chr4	155069021	155069021	T	G	ENSMUST00000103180.3	1	ENSMUSG00000029047	missense	I/M	182	Pex10	ENSMUST00000103180.3:c.546T>G	ENSMUSP00000099469.3:p.Ile182Met	H-2-Kb	9	6	6	VAWFYMHGT	VAWFYIHGT	SMMPMBEC	296.654	386.589	1.303	103	0.117	366.731	465.832	1.27	684.88	393.67	468.1	352.3	463.5643185	381.1623536	386.5894518	296.6538575	M6_p20	-0.257142857	0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.124	103	0	0	NA	4qE2	chr4-147681972-156223608	3	2	1	0.93	4.367554902	NA	1	0.582340654	sgMsh2	cell line
chr4	125641560	125641560	T	C	ENSMUST00000030676.7	1	ENSMUSG00000001985	missense	M/T	250	Grik3	ENSMUST00000030676.7:c.749T>C	ENSMUSP00000030676.7:p.Met250Thr	H-2-Kb	9	11	1	TMTEYYHFI	MMTEYYHFI	NetMHCpan	222.7	208.8	0.938	113	0.195	286.573	314.364	1.097	429.61	412.07	208.8	222.7	295.876178	291.1454451	332.8511027	282.000579	M6_p20	-0.385714286	-0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.212	113	0	0	NA	4qD2.2	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.995614666	sgMsh2	cell line
chr4	120715830	120715830	T	C	ENSMUST00000030376.7	5	ENSMUSG00000028631	missense	Y/C	258	Kcnq4	ENSMUST00000030376.7:c.773A>G	ENSMUSP00000030376.7:p.Tyr258Cys	H-2-Kb	9	4	8	IFASFLVCL	IFASFLVYL	SMM	216.327	119.429	0.552	98	0.061	431.074	194.37	0.451	203.28	670.39	208.1	587.2	119.4290561	216.3266376	185.4598909	274.9476424	M6_p20	2.585714286	2.728571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.085	98	0	0	NA	4qD2.2	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.399185125	sgMsh2	cell line
chr5	8579047	8579047	T	G	ENSMUST00000115378.1	5	ENSMUSG00000040570	missense	N/T	118	Rundc3b	ENSMUST00000115378.1:c.353A>C	ENSMUSP00000111036.1:p.Asn118Thr	H-2-Db	9	4	8	CSIENMETV	CSIENMENV	NetMHC	7.92	44.59	5.63	97	0.072	23.913	88.07	3.683	44.59	7.92	49.5	11.8	130.2027029	36.02632811	126.639737	36.43929785	M6_p20	-0.085714286	-0.085714286	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.075	97	0	0	NA	5qA1	chr5-3344388-14859185	4	2	2	0.93	4.367554902	NA	1	0.35222217	sgMsh2	cell line
chr5	72136781	72136781	T	C	ENSMUST00000031122.8	1	ENSMUSG00000029212	missense	V/A	466	Gabrb1	ENSMUST00000031122.8:c.1397T>C	ENSMUSP00000031122.7:p.Val466Ala	H-2-Db	9	8	6	FSLFNAVYW	FSLFNVVYW	NetMHC	94.1	147.67	1.569	142	0.19	178.854	212.699	1.189	147.67	94.1	543.8	445.4	277.7282132	246.388254	112.0908081	111.3191804	M6_p20	0.985714286	1.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.194	142	0	0	NA	5qC3.2	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.911081345	sgMsh2	cell line
chr5	63806698	63806698	A	T	ENSMUST00000159584.2	1	ENSMUSG00000090061	missense	K/N	1208	Nwd2	ENSMUST00000159584.2:c.3624A>T	ENSMUSP00000124712.1:p.Lys1208Asn	H-2-Db	9	7	5	ILICNALSI	ILICKALSI	NetMHCpan	141.1	7481.9	53.026	237	0.089	238.859	9795.44	41.009	18580.86	208.18	7481.9	141.1	8762.337965	269.537999	10828.54237	322.5299134	M6_p20	1.828571429	2.485714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.102	237	0	0	NA	5qC3.1	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.479022151	sgMsh2	cell line
chr5	77345396	77345396	T	C	ENSMUST00000031167.5	1	ENSMUSG00000029250	missense	M/T	1075	Polr2b	ENSMUST00000031167.5:c.3224T>C	ENSMUSP00000031167.5:p.Met1075Thr	H-2-Db	9	3	9	IQILNRQPT	IQILNRQPM	NetMHC	257.87	9.72	0.038	141	0.177	332.261	20.79	0.063	9.72	257.87	15.3	681.9	26.2796756	384.2554182	30.3088878	280.265732	M6_p20	-0.785714286	-0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.181	141	0	0	NA	5qC3.3	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.850029502	sgMsh2	cell line
chr5	24415437	24415437	AG	A	ENSMUST00000196296.1	5	ENSMUSG00000038276	FS	Q/X	195	Asic3	ENSMUST00000196296.1:c.589del	ENSMUSP00000143083.1:p.Ala197GlnfsTer77	H-2-Db	9	59	0	TARRNPLPL	NA	SMM	164.672	NA	NA	56	0.232	227.965	NA	NA	NA	391.53	NA	273.3	NA	164.6720909	NA	182.6291089	M6_p20	-1.157142857	-1.157142857	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Vardict	2	0.244	56	0	0	NA	5qA3	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr5	49987499	49987499	C	T	ENSMUST00000030971.6	1	ENSMUSG00000029090	missense	S/N	584	Adgra3	ENSMUST00000030971.6:c.1751G>A	ENSMUSP00000030971.5:p.Ser584Asn	H-2-Kb	8	9	3	VSNTFSSL	VSSTFSSL	NetMHC	6.05	7.18	1.187	37	0.162	9.733	17.653	1.814	7.18	6.05	12.2	12.2	23.10681036	9.262751223	24.70244836	10.20328459	M6_p20	0	0.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.207	37	0	0	NA	5qB3	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.972133188	sgMsh2	cell line
chr5	16359015	16359015	G	A	ENSMUST00000039370.13	1	ENSMUSG00000040118	missense	D/N	899	Cacna2d1	ENSMUST00000039370.13:c.2695G>A	ENSMUSP00000049457.7:p.Asp899Asn	H-2-Kb	8	8	4	KSYNYQSV	KSYDYQSV	NetMHC	6.19	12.68	2.048	153	0.196	17.147	27.778	1.62	12.68	6.19	15.4	11.4	40.15503419	22.89496585	51.49202839	28.88949831	M6_p20	-1	-1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.213	153	0	0	NA	5qA3	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr5	35087007	35087007	T	C	ENSMUST00000050709.3	1	ENSMUSG00000044716	missense	S/P	532	Dok7	ENSMUST00000050709.3:c.1594T>C	ENSMUSP00000059538.3:p.Ser532Pro	H-2-Kb	8	9	3	STPRYAQI	STSRYAQI	NetMHC	12.58	63.7	5.064	40	0.175	64.57	177.694	2.752	63.7	12.58	195.8	62.5	194.4195797	72.56713881	160.9681675	66.64076901	M6_p20	-0.757142857	-0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.192	40	0	0	NA	5qB2	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.901688754	sgMsh2	cell line
chr5	20886561	20886561	A	G	ENSMUST00000115259.2	1	ENSMUSG00000045435	missense	Y/C	108	Tmem60	ENSMUST00000115259.2:c.323A>G	ENSMUSP00000110914.2:p.Tyr108Cys	H-2-Kb	8	9	3	LSCVFIPL	LSYVFIPL	SMMPMBEC	18.739	1.883	0.1	252	0.067	26.189	2.268	0.087	2.35	26.63	3.4	62.9	2.186452264	25.74779247	1.882521739	18.73872337	M6_p20	2.2	2.2	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.073	252	0	0	NA	5qA3	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.342829578	sgMsh2	cell line
chr4	155966486	155966486	T	C	ENSMUST00000024338.4	1	ENSMUSG00000023571	missense	M/T	304	C1qtnf12	ENSMUST00000024338.4:c.911T>C	ENSMUSP00000024338.4:p.Met304Thr	H-2-Kb	8	12	6	SSFSGTLL	SSFSGMLL	NetMHCpan	66.9	50.3	0.752	174	0.046	86.988	70.723	0.813	34.09	71	50.3	66.9	95.22259222	121.8260042	91.14650073	102.9769442	M6_p20	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.062	174	0	0	NA	4qE2	chr4-147681972-156223608	3	2	1	0.93	4.367554902	NA	1	0.291170327	sgMsh2	cell line
chr5	72136781	72136781	T	C	ENSMUST00000031122.8	1	ENSMUSG00000029212	missense	V/A	466	Gabrb1	ENSMUST00000031122.8:c.1397T>C	ENSMUSP00000031122.7:p.Val466Ala	H-2-Kb	8	13	1	AVYWLYYV	VVYWLYYV	NetMHC	91.79	21.25	0.232	142	0.19	165.905	50.397	0.304	21.25	91.79	59.6	164.8	44.33431473	167.0090478	56.4598864	193.5263029	M6_p20	1.057142857	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.194	142	0	0	NA	5qC3.2	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.911081345	sgMsh2	cell line
chr5	41828848	41828848	C	T	ENSMUST00000050556.10	5	ENSMUSG00000061755	missense	V/I	464	Bod1l	ENSMUST00000050556.10:c.1390G>A	ENSMUSP00000058618.7:p.Val464Ile	H-2-Kb	8	9	3	RGIRHAYV	RGVRHAYV	NetMHC	158.45	452.49	2.856	310	0.077	211.003	424.722	2.013	452.49	158.45	749.7	324.6	396.9538331	207.8452003	394.2212222	214.1608096	M6_p20	0.157142857	0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.084	310	0	0	NA	5qB3	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.39448883	sgMsh2	cell line
chr5	16359028	16359028	T	C	ENSMUST00000039370.13	1	ENSMUSG00000040118	missense	V/A	903	Cacna2d1	ENSMUST00000039370.13:c.2708T>C	ENSMUSP00000049457.7:p.Val903Ala	H-2-Kb	8	4	8	KSYDYQSA	KSYDYQSV	NetMHCpan	154.7	15.4	0.1	175	0.04	204.33	27.778	0.136	12.68	168.92	15.4	154.7	40.15503419	239.7397234	51.49202839	247.5939338	M6_p20	-1.342857143	-1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.046	175	0	0	NA	5qA3	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.216029597	sgMsh2	cell line
chr5	72136781	72136781	T	C	ENSMUST00000031122.8	1	ENSMUSG00000029212	missense	V/A	466	Gabrb1	ENSMUST00000031122.8:c.1397T>C	ENSMUSP00000031122.7:p.Val466Ala	H-2-Kb	8	6	8	ITFSLFNA	ITFSLFNV	SMMPMBEC	129.045	26.837	0.208	142	0.19	166.635	25.674	0.154	25.66	325.35	23.2	179.9	25.68857419	153.3698525	26.83737286	129.0446488	M6_p20	0.885714286	1.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.194	142	0	0	NA	5qC3.2	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.911081345	sgMsh2	cell line
chr5	53700084	53700084	A	G	ENSMUST00000031093.4	1	ENSMUSG00000029193	missense	V/A	328	Cckar	ENSMUST00000031093.4:c.983T>C	ENSMUSP00000031093.3:p.Val328Ala	H-2-Kb	8	8	4	VIVALFFL	VIVVLFFL	SMM	123.806	118.779	0.959	153	0.248	250.341	189.98	0.759	254.72	356.15	789.3	353.2	118.7790917	123.8055176	125.2391179	147.4823333	M6_p20	3.385714286	3.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	153	0	0	NA	5qC1	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr5	16618861	16618861	C	CA	ENSMUST00000199581.4	1	ENSMUSG00000028864	FS	-/X	685-686	Hgf	ENSMUST00000199581.4:c.2059dup	ENSMUSP00000143424.1:p.Met687AsnfsTer59	H-2-Kb	8	31	0	SSWYFCSS	NA	SMM	132.966	NA	NA	228	0.175	211.846	NA	NA	NA	521.79	NA	264.2	NA	132.965815	NA	159.4924025	M6_p20	0.1	0.1	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.167	228	0	0	NA	5qA3	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.784281364	sgMsh2	cell line
chr5	44541790	44541790	T	C	ENSMUST00000070748.9	1	ENSMUSG00000039706	missense	Y/C	102	Ldb2	ENSMUST00000070748.9:c.305A>G	ENSMUSP00000067737.5:p.Tyr102Cys	H-2-Kb	8	6	6	VTDLYCIL	VTDLYYIL	SMM	140.197	103.214	0.736	197	0.294	259.244	165.93	0.64	223.19	600.89	199.2	346.8	103.2143305	140.197413	132.6600022	171.6880231	M6_p20	1.3	1.357142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.296	197	0	0	NA	5qB3	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr5	87694728	87694728	C	T	ENSMUST00000197422.4	1	ENSMUSG00000063157	missense	A/T	147	Csn2	ENSMUST00000197422.4:c.439G>A	ENSMUSP00000143341.1:p.Ala147Thr	H-2-Kb	8	9	3	SLTSLANL	SLASLANL	SMM	381.716	341.775	0.895	102	0.127	487.6	375.638	0.77	720.32	664.91	348.8	569	341.7747702	381.7156799	402.476011	406.2000757	M6_p20	1.171428571	1.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.156	102	0	0	NA	5qE1	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.732622113	sgMsh2	cell line
chr5	72136781	72136781	T	C	ENSMUST00000031122.8	1	ENSMUSG00000029212	missense	V/A	466	Gabrb1	ENSMUST00000031122.8:c.1397T>C	ENSMUSP00000031122.7:p.Val466Ala	H-2-Kb	9	6	8	ITFSLFNAV	ITFSLFNVV	NetMHCpan	22.2	42.2	1.901	142	0.19	58.568	114.168	1.949	100.66	26.54	42.2	22.2	127.6762152	90.59620379	139.7172407	112.784651	M6_p20	1.585714286	1.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.194	142	0	0	NA	5qC3.2	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.911081345	sgMsh2	cell line
chr5	35087007	35087007	T	C	ENSMUST00000050709.3	1	ENSMUSG00000044716	missense	S/P	532	Dok7	ENSMUST00000050709.3:c.1594T>C	ENSMUSP00000059538.3:p.Ser532Pro	H-2-Kb	9	8	4	ASTPRYAQI	ASTSRYAQI	NetMHC	109.33	62.84	0.575	40	0.175	205.599	158.66	0.772	62.84	109.33	229.2	215.2	179.5188262	308.3968972	137.8002483	195.99726	M6_p20	-0.757142857	-0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.192	40	0	0	NA	5qB2	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.901688754	sgMsh2	cell line
chr5	16618861	16618861	C	CA	ENSMUST00000199581.4	1	ENSMUSG00000028864	FS	-/X	685-686	Hgf	ENSMUST00000199581.4:c.2059dup	ENSMUSP00000143424.1:p.Met687AsnfsTer59	H-2-Kb	9	32	0	SWYFCSSSI	NA	SMM	110.69	NA	NA	228	0.175	162.07	NA	NA	NA	127.69	NA	222.7	NA	110.690411	NA	196.4490803	M6_p20	0.871428571	0.871428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.167	228	0	0	NA	5qA3	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.784281364	sgMsh2	cell line
chr5	87887345	87887345	C	T	ENSMUST00000129757.8	5	ENSMUSG00000009580	missense	P/L	56	Odam	ENSMUST00000129757.8:c.167C>T	ENSMUSP00000117898.2:p.Pro56Leu	H-2-Kb	9	7	5	SWIPLFPGF	SWIPPFPGF	SMM	167.151	225.481	1.349	46	0.196	248.263	377.632	1.521	237.36	193.66	1017.7	578.5	225.4810248	167.1513929	517.9048762	302.8656361	M6_p20	1.471428571	1.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	46	0	0	NA	5qE1	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.939259119	sgMsh2	cell line
chr5	87887345	87887345	C	T	ENSMUST00000129757.8	5	ENSMUSG00000009580	missense	P/L	56	Odam	ENSMUST00000129757.8:c.167C>T	ENSMUSP00000117898.2:p.Pro56Leu	H-2-Kb	9	3	9	GAFNSWIPL	GAFNSWIPP	SMMPMBEC	199.182	1466.392	7.362	46	0.196	221.206	6480.976	29.298	11495.56	212.21	12317	257.9	1061.964502	230.202481	1466.391721	199.1819593	M6_p20	0.614285714	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	46	0	0	NA	5qE1	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.939259119	sgMsh2	cell line
chr5	3818616	3818616	A	G	ENSMUST00000080085.8	1	ENSMUSG00000000600	missense	H/R	360	Krit1	ENSMUST00000080085.8:c.1079A>G	ENSMUSP00000078985.4:p.His360Arg	H-2-Kb	9	7	5	SSPLRFAAG	SSPLHFAAG	NetMHC	218.11	205.07	0.94	108	0.213	431.596	459.66	1.065	205.07	218.11	544.5	672.9	475.4556362	459.3143352	443.8640791	403.8778168	M6_p20	0.528571429	0.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.229	108	0	0	NA	5qA1	chr5-3344388-14859185	4	2	2	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr5	16618861	16618861	C	CA	ENSMUST00000199581.4	1	ENSMUSG00000028864	FS	-/X	685-686	Hgf	ENSMUST00000199581.4:c.2059dup	ENSMUSP00000143424.1:p.Met687AsnfsTer59	H-2-Kb	9	31	0	SSWYFCSSS	NA	SMM	211.402	NA	NA	228	0.175	263.69	NA	NA	NA	254.38	NA	273	NA	211.4024421	NA	341.3893746	M6_p20	0.1	0.1	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.167	228	0	0	NA	5qA3	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.784281364	sgMsh2	cell line
chr5	16359028	16359028	T	C	ENSMUST00000039370.13	1	ENSMUSG00000040118	missense	V/A	903	Cacna2d1	ENSMUST00000039370.13:c.2708T>C	ENSMUSP00000049457.7:p.Val903Ala	H-2-Kb	9	4	8	KSYDYQSAC	KSYDYQSVC	NetMHCpan	276.2	497	1.799	175	0.04	416.065	787.162	1.892	922.32	305.81	497	276.2	924.9324152	656.3114787	652.0036095	526.3201534	M6_p20	-0.871428571	-0.871428571	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.046	175	0	0	NA	5qA3	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.216029597	sgMsh2	cell line
chr5	53700084	53700084	A	G	ENSMUST00000031093.4	1	ENSMUSG00000029193	missense	V/A	328	Cckar	ENSMUST00000031093.4:c.983T>C	ENSMUSP00000031093.3:p.Val328Ala	H-2-Kb	9	10	2	VALFFLCWM	VVLFFLCWM	SMM	75.008	84.355	1.125	153	0.248	212.356	265.535	1.25	414.59	323.96	871.7	448.6	84.35483883	75.00841699	116.4796347	100.7511472	M6_p20	2.385714286	3.1	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	153	0	0	NA	5qC1	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr5	87587646	87587646	C	T	ENSMUST00000031201.8	1	ENSMUSG00000029272	missense	V/M	58	Sult1e1	ENSMUST00000031201.8:c.172G>A	ENSMUSP00000031201.7:p.Val58Met	H-2-Kb	9	10	2	VMYMIYKEG	VVYMIYKEG	SMMPMBEC	147.996	300.781	2.032	269	0.171	482.069	832.844	1.728	2244.42	1489.03	1307.5	798.9	358.1871488	165.2380267	300.7807237	147.9960077	M6_p20	-0.571428571	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.18	269	0	0	NA	5qE1	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.845333207	sgMsh2	cell line
chr5	122334415	122334415	G	C	ENSMUST00000049009.6	1	ENSMUSG00000038569	missense	L/V	228	Rad9b	ENSMUST00000049009.6:c.682C>G	ENSMUSP00000036177.6:p.Leu228Val	H-2-Kb	8	4	8	ITFCFKEV	ITFCFKEL	NetMHCpan	16.5	4.9	0.297	148	0.203	33.639	9.744	0.29	7.88	25.23	4.9	16.5	12.04314735	43.02689433	11.60753495	42.04748265	M6_p20	0.6	0.642857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.208	148	0	0	NA	5qF	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.976829483	sgMsh2	cell line
chr5	110277756	110277756	A	G	ENSMUST00000031472.11	1	ENSMUSG00000029499	missense	F/L	138	Pxmp2	ENSMUST00000031472.11:c.412T>C	ENSMUSP00000031472.5:p.Phe138Leu	H-2-Kb	8	8	4	VSVLVAKM	VSVFVAKM	NetMHC	116.68	141.33	1.211	185	0.227	223.541	229.414	1.026	141.33	116.68	47.9	183	323.3999884	288.2305431	317.4972734	264.0827294	M6_p20	1.6	1.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.222	185	0	0	NA	5qF	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr5	128602175	128602175	T	G	ENSMUST00000117102.3	NA	ENSMUSG00000081683	missense	F/V	320	Fzd10	ENSMUST00000117102.3:c.958T>G	ENSMUSP00000114114.2:p.Phe320Val	H-2-Kb	8	6	6	LVLYYVGM	LVLYYFGM	NetMHCpan	67.9	82.6	1.216	76	0.092	231.943	180.72	0.779	115.55	159.98	82.6	67.9	312.4208431	400.6268017	245.8895091	303.9065077	M6_p20	1.585714286	1.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.106	76	0	0	NA	5qG1.3	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.497807333	sgMsh2	cell line
chr5	124646720	124646720	G	C	ENSMUST00000037865.12	1	ENSMUSG00000038023	missense	M/I	314	Atp6v0a2	ENSMUST00000037865.12:c.942G>C	ENSMUSP00000039737.8:p.Met314Ile	H-2-Kb	8	4	8	AIYHMLNI	AIYHMLNM	NetMHCpan	91.3	50.6	0.554	63	0.254	200.452	111.002	0.554	73.5	173.53	50.6	91.3	148.504632	240.2923806	155.1457917	227.3735801	M6_p20	0.957142857	0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.268	63	0	0	NA	5qF	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr5	122559719	122559719	T	C	ENSMUST00000031426.13	1	ENSMUSG00000029469	missense	H/R	565	Ift81	ENSMUST00000031426.13:c.1694A>G	ENSMUSP00000031426.7:p.His565Arg	H-2-Kb	8	8	4	SKYRYTNC	SKYHYTNC	SMM	88.867	165.859	1.866	279	0.254	164.978	520.745	3.156	824.85	208.13	921.7	665.9	165.8593656	88.86689373	216.6406749	121.8260042	M6_p20	-1.814285714	-1.814285714	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.254	279	0	0	NA	5qF	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr5	123029094	123029094	A	G	ENSMUST00000121652.7	1	ENSMUSG00000049686	missense	Q/R	110	Orai1	ENSMUST00000121652.7:c.329A>G	ENSMUSP00000113097.1:p.Gln110Arg	H-2-Kb	8	5	7	VAMVEVRL	VAMVEVQL	NetMHCpan	161.3	312.1	1.935	63	0.349	224.693	395.574	1.761	446.21	236.7	312.1	161.3	660.2980276	382.5956254	344.9371732	212.686537	M6_p20	1.128571429	1.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.353	63	0	0	NA	5qF	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	2	1	sgMsh2	cell line
chr5	114446235	114446235	A	G	ENSMUST00000112239.8	1	ENSMUSG00000041939	missense	N/S	52	Mvk	ENSMUST00000112239.8:c.155A>G	ENSMUSP00000107858.2:p.Asn52Ser	H-2-Kb	8	8	4	VSVSLPNI	VSVNLPNI	NetMHC	241.52	285.96	1.184	125	0.192	297.918	341.33	1.146	285.96	241.52	319.8	246.1	362.8607551	351.3500341	386.1357391	349.7357273	M6_p20	0.828571429	0.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	125	0	0	NA	5qF	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.939259119	sgMsh2	cell line
chr5	115127330	115127330	A	G	ENSMUST00000060798.5	1	ENSMUSG00000046562	missense	F/L	148	Unc119b	ENSMUST00000060798.5:c.442T>C	ENSMUSP00000055475.5:p.Phe148Leu	H-2-Kb	8	5	7	YQFTPALL	YQFTPAFL	SMM	296.306	196.671	0.664	125	0.12	335.523	309.714	0.923	532.95	346.9	393.1	369.1	196.6708524	296.3056959	226.3288934	324.1455024	M6_p20	0.914285714	0.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.143	125	0	0	NA	5qF	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.67157027	sgMsh2	cell line
chr5	123758488	123758488	A	G	ENSMUST00000031366.11	1	ENSMUSG00000029414	missense	N/D	138	Kntc1	ENSMUST00000031366.11:c.412A>G	ENSMUSP00000031366.7:p.Asn138Asp	H-2-Kb	8	5	7	SQRTYRDL	SQRTYRNL	SMM	239.74	37.217	0.155	207	0.174	352.064	42.914	0.122	25.66	412.56	218.3	1756.2	37.21688324	239.7397234	48.61160944	291.5680954	M6_p20	-2.028571429	-2.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.172	207	0	0	NA	5qF	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.807762842	sgMsh2	cell line
chr5	101849358	101849358	T	C	ENSMUST00000053177.13	1	ENSMUSG00000043940	missense	I/V	3134	Wdfy3	ENSMUST00000053177.13:c.9400A>G	ENSMUSP00000052607.7:p.Ile3134Val	H-2-Kb	8	11	1	VIWDLNKL	IIWDLNKL	NetMHCpan	215.6	262.8	1.219	71	0.254	248.459	264.97	1.066	452.92	420.56	262.8	215.6	267.1406633	250.4609364	240.2923806	246.456343	M6_p20	0.042857143	0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.265	71	0	0	NA	5qE4	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr5	97938118	97938118	A	G	ENSMUST00000031281.13	1	ENSMUSG00000029338	missense	V/A	465	Antxr2	ENSMUST00000031281.13:c.1394T>C	ENSMUSP00000031281.9:p.Val465Ala	H-2-Kb	8	6	6	KQYDRASL	KQYDRVSL	NetMHCpan	244.9	441.5	1.803	96	0.083	342.196	988.056	2.887	1221.63	468.04	441.5	244.9	1001.705365	346.5293309	974.4061133	337.8625068	M6_p20	-1.142857143	-1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.092	96	0	0	NA	5qE3	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.432059195	sgMsh2	cell line
chr5	127650704	127650704	T	C	ENSMUST00000118139.2	1	ENSMUSG00000049971	missense	V/A	80	Glt1d1	ENSMUST00000118139.2:c.239T>C	ENSMUSP00000113864.1:p.Val80Ala	H-2-Kb	8	5	7	HSIPFGAI	HSIPFGVI	NetMHCpan	293.7	660.3	2.248	48	0.208	460.739	1062.469	2.306	2797.35	496.24	660.3	293.7	1166.11129	495.1536674	958.826437	426.324214	M6_p20	1.542857143	1.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.266	48	0	0	NA	5qG1.2	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr5	128602175	128602175	T	G	ENSMUST00000117102.3	NA	ENSMUSG00000081683	missense	F/V	320	Fzd10	ENSMUST00000117102.3:c.958T>G	ENSMUSP00000114114.2:p.Phe320Val	H-2-Kb	8	4	8	VFLVLYYV	VFLVLYYF	SMM	220.161	1001.705	4.55	76	0.092	469.155	1030.407	2.196	1056.8	648.75	5057.8	2653.3	1001.705365	220.1608027	1004.014535	289.5609548	M6_p20	2.314285714	2.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.106	76	0	0	NA	5qG1.3	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.497807333	sgMsh2	cell line
chr5	115127330	115127330	A	G	ENSMUST00000060798.5	1	ENSMUSG00000046562	missense	F/L	148	Unc119b	ENSMUST00000060798.5:c.442T>C	ENSMUSP00000055475.5:p.Phe148Leu	H-2-Kb	9	3	9	VRYQFTPAL	VRYQFTPAF	NetMHC	25.89	145.31	5.613	125	0.12	64.362	149.784	2.327	145.31	25.89	263.6	60	115.9070894	68.72424857	154.2588183	89.17641311	M6_p20	0.185714286	0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.143	125	0	0	NA	5qF	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.67157027	sgMsh2	cell line
chr5	134597889	134597889	A	G	ENSMUST00000023867.7	1	ENSMUSG00000023104	missense	N/S	327	Rfc2	ENSMUST00000023867.7:c.980A>G	ENSMUSP00000023867.6:p.Asn327Ser	H-2-Kb	9	11	1	SSLLQMAGL	NSLLQMAGL	NetMHC	33.64	596.53	17.733	137	0.095	159.422	846.202	5.308	596.53	33.64	657	78.9	1035.404385	239.9440583	1127.84651	281.3519957	M6_p20	1.6	1.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.106	137	0	0	NA	5qG2	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.497807333	sgMsh2	cell line
chr5	108797917	108797917	T	A	ENSMUST00000172140.2	5	ENSMUSG00000090961	missense	K/M	608	Vmn2r8	ENSMUST00000172140.2:c.1823A>T	ENSMUSP00000126953.1:p.Lys608Met	H-2-Kb	9	5	7	VTFVKYMDT	VTFVKYKDT	NetMHC	118.73	352.78	2.971	830	0.155	133.741	296.916	2.22	352.78	118.73	835.9	251.6	241.0515897	148.2893631	183.7595844	119.1927939	M6_p20	-0.071428571	1.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.162	830	0	0	NA	5qF	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.760799886	sgMsh2	cell line
chr5	100783064	100783064	T	C	ENSMUST00000044684.13	1	ENSMUSG00000035266	missense	T/A	607	Helq	ENSMUST00000044684.13:c.1819A>G	ENSMUSP00000041599.7:p.Thr607Ala	H-2-Kb	9	3	9	IAYHHSGLA	IAYHHSGLT	NetMHC	247.31	291.01	1.177	97	0.103	252.751	227.555	0.9	291.01	247.31	501.5	312.5	164.1005362	254.7475407	163.0234201	250.7552301	M6_p20	-0.471428571	-0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.116	97	0	0	NA	5qE4	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.544770289	sgMsh2	cell line
chr5	87980456	87980456	C	T	ENSMUST00000008051.4	1	ENSMUSG00000007907	missense	A/V	322	Cabs1	ENSMUST00000008051.4:c.965C>T	ENSMUSP00000008051.3:p.Ala322Val	H-2-Kb	9	3	9	SRYDFIVTV	SRYDFIVTA	NetMHC	247.69	1919.8	7.751	443	0.163	296.64	1365.153	4.602	1919.8	247.69	1245.9	252	1361.789559	341.2793414	1368.51638	396.5062159	M6_p20	1.457142857	1.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.157	443	0	0	NA	5qE1	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.737318408	sgMsh2	cell line
chr5	124646720	124646720	G	C	ENSMUST00000037865.12	1	ENSMUSG00000038023	missense	M/I	314	Atp6v0a2	ENSMUST00000037865.12:c.942G>C	ENSMUSP00000039737.8:p.Met314Ile	H-2-Kb	9	3	9	KAIYHMLNI	KAIYHMLNM	NetMHCpan	142.3	108.5	0.762	63	0.254	457.411	270.709	0.592	183.23	299.29	108.5	142.3	358.1871488	676.2542383	360.7862685	615.5310989	M6_p20	0.957142857	0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.268	63	0	0	NA	5qF	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr5	110303958	110303958	A	G	ENSMUST00000007296.11	1	ENSMUSG00000007080	missense	T/A	889	Pole	ENSMUST00000007296.11:c.2665A>G	ENSMUSP00000007296.5:p.Thr889Ala	H-2-Kb	9	10	2	LAISYPGAM	LTISYPGAM	NetMHC	321.94	443.75	1.378	213	0.136	444.326	551.545	1.241	443.75	321.94	412.2	409.9	659.3408748	478.7513372	692.2293355	536.1051757	M6_p20	0.585714286	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.136	213	0	0	NA	5qF	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.638696201	sgMsh2	cell line
chr5	122559719	122559719	T	C	ENSMUST00000031426.13	1	ENSMUSG00000029469	missense	H/R	565	Ift81	ENSMUST00000031426.13:c.1694A>G	ENSMUSP00000031426.7:p.His565Arg	H-2-Kb	9	8	4	SKYRYTNCM	SKYHYTNCM	SMM	345.231	307.688	0.891	279	0.254	387.24	525.106	1.356	727.92	396.69	751.5	482.5	307.6876041	345.2311699	322.2923521	377.7896015	M6_p20	-0.985714286	-0.985714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.254	279	0	0	NA	5qF	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr5	128602175	128602175	T	G	ENSMUST00000117102.3	NA	ENSMUSG00000081683	missense	F/V	320	Fzd10	ENSMUST00000117102.3:c.958T>G	ENSMUSP00000114114.2:p.Phe320Val	H-2-Kb	9	5	7	FLVLYYVGM	FLVLYYFGM	SMMPMBEC	298.023	330.56	1.109	76	0.092	376.102	368.465	0.98	406.37	422.51	1212.2	922.2	299.3022626	329.6932077	330.5597718	298.0231495	M6_p20	1.585714286	2.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.106	76	0	0	NA	5qG1.3	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.497807333	sgMsh2	cell line
chr5	128601265	128601265	A	G	ENSMUST00000117102.3	NA	ENSMUSG00000081683	missense	I/M	16	Fzd10	ENSMUST00000117102.3:c.48A>G	ENSMUSP00000114114.2:p.Ile16Met	H-2-Kb	9	9	3	VMMGSCTAI	VMIGSCTAI	SMMPMBEC	459.462	483.337	1.052	11	0.364	484.839	559.431	1.154	618.7	507.18	1098.8	926.3	500.1612019	462.4981501	483.3369531	459.4624246	M6_p20	1.257142857	1.257142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.3	11	0	0	NA	5qG1.3	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr5	97938118	97938118	A	G	ENSMUST00000031281.13	1	ENSMUSG00000029338	missense	V/A	465	Antxr2	ENSMUST00000031281.13:c.1394T>C	ENSMUSP00000031281.9:p.Val465Ala	H-2-Kb	9	6	6	KQYDRASLM	KQYDRVSLM	SMM	316.308	293.839	0.929	96	0.083	367.205	308.437	0.84	396.11	566.31	270.2	317.3	293.8393807	316.3078717	323.0353127	417.1094219	M6_p20	-0.371428571	-0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.092	96	0	0	NA	5qE3	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.432059195	sgMsh2	cell line
chr6	43167977	43167977	G	T	ENSMUST00000205175.2	5	ENSMUSG00000071481	missense	K/N	306	Olfr437	ENSMUST00000205175.2:c.918G>T	ENSMUSP00000145490.1:p.Lys306Asn	H-2-Db	9	13	5	RALQNKRSV	RALQKKRSV	SMM	153.681	4995.972	32.509	84	0.25	206.324	11301.911	54.778	20445.39	223.6	16256.8	364.5	4995.972049	153.6809371	6347.021946	189.0470915	M6_p20	-1.171428571	-1.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.261	84	0	0	NA	6qB2.1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	2	1	sgMsh2	cell line
chr6	41657965	41657965	T	C	ENSMUST00000031901.10	1	ENSMUSG00000036899	missense	T/A	526	Trpv5	ENSMUST00000031901.10:c.1576A>G	ENSMUSP00000031901.5:p.Thr526Ala	H-2-Db	9	10	2	SAFELFLTI	STFELFLTI	SMM	159.448	1036.621	6.501	217	0.152	215.606	1263.539	5.86	1725.03	319.56	1449.2	242.6	1036.620994	159.4483392	1077.878973	188.6122952	M6_p20	1.928571429	1.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.163	217	0	0	NA	6qB2.1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.765496182	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	8	4	8	VLVSYTRL	VLVSYTRI	NetMHC	19.39	171.38	8.839	117	0.171	31.763	209.772	6.604	171.38	19.39	99.5	20.3	348.1288376	53.67103866	248.1646968	43.22549746	M6_p20	0.642857143	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.199	117	0	0	NA	6qB2.1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.934562823	sgMsh2	cell line
chr6	41059465	41059465	G	A	ENSMUST00000103265.4	NA	ENSMUSG00000107486	missense	C/Y	8	Trbv4	ENSMUST00000103265.4:c.23G>A	ENSMUSP00000144909.1:p.Cys8Tyr	H-2-Kb	8	6	3	LSYVAFCL	LSCVAFCL	NetMHC	38.35	2963.86	77.284	306	0.173	79.509	2202.556	27.702	2963.86	38.35	3210.1	53.4	1441.252256	122.3883275	1051.332282	105.6185011	M6_p20	1.857142857	1.857142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.185	306	0	0	NA	6qB1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.868814685	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	8	6	6	VSYTRLLV	VSYTRILV	NetMHCpan	35.2	39.9	1.134	117	0.171	94.957	84.621	0.891	32.04	39.69	39.9	35.2	129.3421274	150.2242346	135.1263357	158.7596015	M6_p20	0.642857143	0.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.199	117	0	0	NA	6qB2.1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.934562823	sgMsh2	cell line
chr6	38818458	38818458	T	C	ENSMUST00000161779.7	1	ENSMUSG00000061436	missense	K/R	292	Hipk2	ENSMUST00000161779.7:c.875A>G	ENSMUSP00000124133.1:p.Lys292Arg	H-2-Kb	8	8	4	KQNRFSPL	KQNKFSPL	NetMHC	61.41	154.24	2.512	162	0.086	64.826	136.646	2.108	154.24	61.41	353.3	182.8	116.611129	64.37837347	119.0529058	65.27396586	M6_p20	-1.042857143	-1.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.114	162	0	0	NA	6qB1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.535377698	sgMsh2	cell line
chr6	41539131	41539131	G	T	ENSMUST00000192856.5	NA	ENSMUSG00000076490	missense	A/S	132	Trbc1	ENSMUST00000192856.5:c.393G>T	ENSMUSP00000141715.1:p.Ala132Ser	H-2-Kb	8	11	1	SSYQQGVL	ASYQQGVL	SMM	41.662	78.116	1.875	348	0.106	81.698	170.164	2.083	259.72	98.72	232	133.6	78.11600059	41.66198901	108.3278191	64.67553055	M6_p20	-0.214285714	-0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.107	348	0	0	NA	6qB1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.502503628	sgMsh2	cell line
chr6	38982203	38982203	T	C	ENSMUST00000003017.12	1	ENSMUSG00000029925	missense	F/L	107	Tbxas1	ENSMUST00000003017.12:c.319T>C	ENSMUSP00000003017.6:p.Phe107Leu	H-2-Kb	8	4	8	LVENFSNL	LVENFSNF	SMMPMBEC	88.255	1108.511	12.56	447	0.125	120.109	1881.33	15.664	2784.54	111.47	1669.8	195.6	2092.859144	128.7478543	1108.510982	88.25513833	M6_p20	-0.071428571	-0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.135	447	0	0	NA	6qB1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.633999905	sgMsh2	cell line
chr6	41059465	41059465	G	A	ENSMUST00000103265.4	NA	ENSMUSG00000107486	missense	C/Y	8	Trbv4	ENSMUST00000103265.4:c.23G>A	ENSMUSP00000144909.1:p.Cys8Tyr	H-2-Kb	8	7	2	SYVAFCLL	SCVAFCLL	NetMHCpan	77.4	267.2	3.452	306	0.173	180.57	305.061	1.689	558.92	115.25	267.2	77.4	338.6413603	245.8895091	271.4813499	268.3737286	M6_p20	2.514285714	2.514285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.185	306	0	0	NA	6qB1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.868814685	sgMsh2	cell line
chr5	150067253	150067253	T	C	ENSMUST00000065745.9	1	ENSMUSG00000053368	missense	V/A	493	Rxfp2	ENSMUST00000065745.9:c.1478T>C	ENSMUSP00000067897.3:p.Val493Ala	H-2-Kb	8	10	2	SALLLTFL	SVLLLTFL	NetMHC	144.17	209.19	1.451	38	0.132	172.629	200.914	1.164	209.19	144.17	172.1	155.7	192.6371303	189.5570756	209.7683683	226.8506354	M6_p20	2.728571429	2.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.148	38	0	0	NA	5qG3	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.695051748	sgMsh2	cell line
chr6	35270381	35270381	A	G	ENSMUST00000031868.4	1	ENSMUSG00000029843	missense	I/T	568	Slc13a4	ENSMUST00000031868.4:c.1703T>C	ENSMUSP00000031868.4:p.Ile568Thr	H-2-Kb	8	11	1	TVFSYGHC	IVFSYGHC	SMMPMBEC	126.398	45.787	0.362	156	0.064	145.752	48.403	0.332	38.66	171.24	51.8	148.7	51.01994663	142.8038776	45.7867692	126.3979412	M6_p20	0.542857143	0.542857143	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.082	156	0	0	NA	6qB1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.385096239	sgMsh2	cell line
chr6	41657965	41657965	T	C	ENSMUST00000031901.10	1	ENSMUSG00000036899	missense	T/A	526	Trpv5	ENSMUST00000031901.10:c.1576A>G	ENSMUSP00000031901.5:p.Thr526Ala	H-2-Kb	8	7	5	AMFSAFEL	AMFSTFEL	NetMHCpan	61	77.7	1.274	217	0.152	314.735	337.058	1.071	162.74	223.27	77.7	61	596.6779652	406.2000757	511.3755976	424.3654321	M6_p20	1.257142857	1.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.163	217	0	0	NA	6qB2.1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.765496182	sgMsh2	cell line
chr5	142451467	142451467	A	G	ENSMUST00000072837.6	1	ENSMUSG00000056493	missense	N/S	346	Foxk1	ENSMUST00000072837.6:c.1037A>G	ENSMUSP00000072616.5:p.Asn346Ser	H-2-Kb	8	10	2	LSRYFIKV	LNRYFIKV	NetMHCpan	133.4	160.9	1.206	113	0.265	289.37	648.139	2.24	617.48	246.28	160.9	133.4	678.797134	367.0624846	693.0107956	332.4604589	M6_p20	0.142857143	0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.272	113	0	0	NA	5qG2	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr5	142472335	142472335	A	C	ENSMUST00000038699.12	1	ENSMUSG00000039623	missense	D/A	421	Ap5z1	ENSMUST00000038699.12:c.1262A>C	ENSMUSP00000041863.8:p.Asp421Ala	H-2-Kb	8	11	1	ASHFLSLL	DSHFLSLL	NetMHCpan	104.9	1978.2	18.858	72	0.236	316.048	1993.045	6.306	4351.3	259.07	1978.2	104.9	1818.61178	387.0258739	2007.890385	373.0267702	M6_p20	1.342857143	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.267	72	0	0	NA	5qG2	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr6	18405230	18405230	T	C	ENSMUST00000090601.11	1	ENSMUSG00000000416	missense	Y/C	1090	Cttnbp2	ENSMUST00000090601.11:c.3269A>G	ENSMUSP00000088089.5:p.Tyr1090Cys	H-2-Kb	8	7	5	SSVTCASM	SSVTYASM	NetMHC	276.55	6.31	0.023	420	0.188	362.299	24.523	0.068	6.31	276.55	15.8	475.5	35.70590129	399.7053856	33.24604589	324.8927349	M6_p20	1.157142857	1.157142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.186	420	0	0	NA	6qA2	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.87351098	sgMsh2	cell line
chr6	23969343	23969343	A	G	ENSMUST00000062463.3	NA	ENSMUSG00000043865	missense	S/P	240	Tas2r118	ENSMUST00000062463.3:c.718T>C	ENSMUSP00000053700.3:p.Ser240Pro	H-2-Kb	8	7	5	TFFTPYFL	TFFTSYFL	SMM	135.75	97.217	0.716	229	0.153	250.491	178.628	0.713	321.44	393.85	219.3	307.9	97.21650414	135.7500506	137.9558114	193.0812048	M6_p20	1.228571429	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.168	229	0	0	NA	6qA3.1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.78897766	sgMsh2	cell line
chr6	38395159	38395159	A	G	ENSMUST00000162554.7	1	ENSMUSG00000056832	missense	N/S	228	Ttc26	ENSMUST00000162554.7:c.683A>G	ENSMUSP00000124369.1:p.Asn228Ser	H-2-Kb	8	8	4	KACSHFRL	KACNHFRL	SMMPMBEC	238.089	262.869	1.104	244	0.057	424.535	436.945	1.029	611.02	603.18	792.8	636.8	253.9451951	245.8895091	262.8693795	238.0893668	M6_p20	0.342857143	0.342857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.072	244	0	0	NA	6qB1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.338133283	sgMsh2	cell line
chr5	142472335	142472335	A	C	ENSMUST00000038699.12	1	ENSMUSG00000039623	missense	D/A	421	Ap5z1	ENSMUST00000038699.12:c.1262A>C	ENSMUSP00000041863.8:p.Asp421Ala	H-2-Kb	8	10	2	FASHFLSL	FDSHFLSL	NetMHCpan	141.3	3750.8	26.545	72	0.236	478.389	3001.845	6.275	9890.2	763.7	3750.8	141.3	2252.890066	471.7805149	2176.406428	484.9980584	M6_p20	1.057142857	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.267	72	0	0	NA	5qG2	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr6	40245585	40245585	A	G	ENSMUST00000061740.7	1	ENSMUSG00000057716	missense	Y/C	78	Tmem178b	ENSMUST00000061740.7:c.233A>G	ENSMUSP00000055268.6:p.Tyr78Cys	H-2-Kb	8	4	8	INFELSRC	INFELSRY	SMM	214.655	688.24	3.206	283	0.049	295.309	1524.17	5.161	2418.68	801.15	2360.1	308.3	688.2401428	214.6545013	495.1536674	282.3189304	M6_p20	-0.457142857	-0.171428571	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.056	283	0	0	NA	6qB1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.262992553	sgMsh2	cell line
chr6	23969343	23969343	A	G	ENSMUST00000062463.3	NA	ENSMUSG00000043865	missense	S/P	240	Tas2r118	ENSMUST00000062463.3:c.718T>C	ENSMUSP00000053700.3:p.Ser240Pro	H-2-Kb	8	4	8	TFFTFFTP	TFFTFFTS	SMM	179.366	98.116	0.547	229	0.153	380.318	326.834	0.859	1485.04	1110.12	507.2	549.9	98.11603738	179.3659491	146.4670721	210.7366151	M6_p20	1.171428571	1.3	FALSE	FALSE	TRUE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.168	229	0	0	NA	6qA3.1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.78897766	sgMsh2	cell line
chr5	140634832	140634832	G	A	ENSMUST00000042661.7	1	ENSMUSG00000036565	missense	L/F	217	Ttyh3	ENSMUST00000042661.7:c.649C>T	ENSMUSP00000037447.3:p.Leu217Phe	H-2-Kb	8	5	7	LGYLGLFL	LGYLGLLL	NetMHCpan	299	206.2	0.69	31	0.097	418.578	617.037	1.474	874.79	1225.62	206.2	299	710.7878574	471.7805149	523.2870654	365.3759857	M6_p20	1.728571429	1.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.136	31	0	0	NA	5qG2	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.638696201	sgMsh2	cell line
chr6	41059465	41059465	G	A	ENSMUST00000103265.4	NA	ENSMUSG00000107486	missense	C/Y	8	Trbv4	ENSMUST00000103265.4:c.23G>A	ENSMUSP00000144909.1:p.Cys8Tyr	H-2-Kb	9	6	3	LSYVAFCLL	LSCVAFCLL	NetMHC	12.4	422.88	34.103	306	0.173	30.943	494.808	15.991	422.88	12.4	541.3	17	511.811453	44.88590645	477.8042407	66.56562285	M6_p20	2.514285714	2.514285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.185	306	0	0	NA	6qB1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.868814685	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	9	3	9	LVLVSYTRL	LVLVSYTRI	NetMHC	46.33	202.94	4.38	117	0.171	99.281	285.444	2.875	202.94	46.33	207.6	48.9	371.6293451	149.6614677	363.2871195	157.1267038	M6_p20	0.642857143	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.199	117	0	0	NA	6qB2.1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.934562823	sgMsh2	cell line
chr6	38982203	38982203	T	C	ENSMUST00000003017.12	1	ENSMUSG00000029925	missense	F/L	107	Tbxas1	ENSMUST00000003017.12:c.319T>C	ENSMUSP00000003017.6:p.Phe107Leu	H-2-Kb	9	3	9	VLVENFSNL	VLVENFSNF	NetMHC	52.53	313.76	5.973	447	0.125	222.433	495.007	2.225	313.76	52.53	154.3	53.8	676.2542383	400.9682638	676.4722721	391.0659467	M6_p20	-0.071428571	1.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.135	447	0	0	NA	6qB1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.633999905	sgMsh2	cell line
chr6	40612821	40612821	CA	C	ENSMUST00000076565.2	NA	ENSMUSG00000058250	FS	C/X	164	Tas2r138	ENSMUST00000076565.2:c.490del	ENSMUSP00000075876.2:p.Cys164AlafsTer13	H-2-Kb	9	5	7	CLWDFFADL	CLWDFFCRS	NetMHC	103.62	3815.78	36.825	63	0.222	231.884	2401.986	10.359	3815.78	103.62	3432.3	158.1	783.6280984	327.4236157	1371.671136	305.6680173	M6_p20	0.471428571	1.328571429	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.266	63	0	0	NA	6qB1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	2	1	sgMsh2	cell line
chr6	41657965	41657965	T	C	ENSMUST00000031901.10	1	ENSMUSG00000036899	missense	T/A	526	Trpv5	ENSMUST00000031901.10:c.1576A>G	ENSMUSP00000031901.5:p.Thr526Ala	H-2-Kb	9	10	2	SAFELFLTI	STFELFLTI	NetMHCpan	31.6	33.2	1.051	217	0.152	136.727	180.488	1.32	139.61	112.72	33.2	31.6	221.3655323	160.7348318	225.0349638	174.2809827	M6_p20	1.928571429	1.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.163	217	0	0	NA	6qB2.1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.765496182	sgMsh2	cell line
chr6	4624427	4624427	A	G	ENSMUST00000015333.11	1	ENSMUSG00000015189	missense	I/V	407	Casd1	ENSMUST00000015333.11:c.1219A>G	ENSMUSP00000015333.5:p.Ile407Val	H-2-Kb	9	10	2	IVYILVLGV	IIYILVLGV	NetMHC	130.29	132.63	1.018	211	0.071	269.686	276.665	1.026	132.63	130.29	481.2	368.5	286.4903513	277.4022632	266.8394274	261.9690589	M6_p20	2.685714286	3.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.08	211	0	0	NA	6qA1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.375703647	sgMsh2	cell line
chr6	25753197	25753197	T	G	ENSMUST00000115330.7	1	ENSMUSG00000029676	missense	N/H	447	Pot1a	ENSMUST00000115330.7:c.1339A>C	ENSMUSP00000110986.1:p.Asn447His	H-2-Kb	9	6	6	VHFVKHNGI	VHFVKNNGI	NetMHC	140.7	1007.74	7.162	162	0.154	161.359	521.923	3.235	1007.74	140.7	693.7	180.5	322.9311952	152.7953016	350.1466697	169.9221522	M6_p20	0.071428571	0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.159	162	0	0	NA	6qA3.1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.746710999	sgMsh2	cell line
chr6	41657965	41657965	T	C	ENSMUST00000031901.10	1	ENSMUSG00000036899	missense	T/A	526	Trpv5	ENSMUST00000031901.10:c.1576A>G	ENSMUSP00000031901.5:p.Thr526Ala	H-2-Kb	9	7	5	AMFSAFELF	AMFSTFELF	SMM	108.171	90.18	0.834	217	0.152	145.735	135.545	0.93	126.29	169.67	144.8	121.8	90.17995204	108.1707896	163.0234201	182.4945923	M6_p20	1.385714286	1.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.163	217	0	0	NA	6qB2.1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.765496182	sgMsh2	cell line
chr5	142472335	142472335	A	C	ENSMUST00000038699.12	1	ENSMUSG00000039623	missense	D/A	421	Ap5z1	ENSMUST00000038699.12:c.1262A>C	ENSMUSP00000041863.8:p.Asp421Ala	H-2-Kb	9	10	2	FASHFLSLL	FDSHFLSLL	NetMHC	190.64	4486.45	23.534	72	0.236	246.595	2634.748	10.685	4486.45	190.64	3910.4	200.7	1294.523683	292.4893114	1359.09558	371.7491635	M6_p20	1.342857143	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.267	72	0	0	NA	5qG2	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	9	4	8	VLVSYTRLL	VLVSYTRIL	NetMHCpan	118.1	254.3	2.153	117	0.171	338.726	712.479	2.103	683.46	204.18	254.3	118.1	741.4980274	473.271116	959.9530659	622.6586131	M6_p20	0.642857143	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.199	117	0	0	NA	6qB2.1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.934562823	sgMsh2	cell line
chr5	150067253	150067253	T	C	ENSMUST00000065745.9	1	ENSMUSG00000053368	missense	V/A	493	Rxfp2	ENSMUST00000065745.9:c.1478T>C	ENSMUSP00000067897.3:p.Val493Ala	H-2-Kb	9	9	3	VSALLLTFL	VSVLLLTFL	NetMHC	227.34	114.55	0.504	38	0.132	241.674	202.722	0.839	114.55	227.34	176.3	228.6	229.1447967	254.7475407	242.8007366	312.7879401	M6_p20	2.728571429	2.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.148	38	0	0	NA	5qG3	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.695051748	sgMsh2	cell line
chr6	4756881	4756881	A	G	ENSMUST00000166678.1	5	ENSMUSG00000092035	missense	T/A	887	Peg10	ENSMUST00000166678.1:c.2659A>G	ENSMUSP00000127306.1:p.Thr887Ala	H-2-Kb	9	10	2	VAYNCRAPQ	VTYNCRAPQ	SMMPMBEC	155.686	201.025	1.291	110	0.1	256.873	337.294	1.313	416.89	326.63	3547.1	2769.3	257.6973782	187.1156015	201.0249672	155.6861575	M6_p20	-1.442857143	0.142857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.127	110	0	0	NA	6qA1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.59642954	sgMsh2	cell line
chr6	23969343	23969343	A	G	ENSMUST00000062463.3	NA	ENSMUSG00000043865	missense	S/P	240	Tas2r118	ENSMUST00000062463.3:c.718T>C	ENSMUSP00000053700.3:p.Ser240Pro	H-2-Kb	9	4	8	TFFTFFTPY	TFFTFFTSY	SMM	58.359	101.651	1.742	229	0.153	196.971	288.699	1.466	465.39	328.44	714.6	450.5	101.6506125	58.35929005	112.0082469	65.50131214	M6_p20	0.585714286	1.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.168	229	0	0	NA	6qA3.1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.78897766	sgMsh2	cell line
chr5	142472335	142472335	A	C	ENSMUST00000038699.12	1	ENSMUSG00000039623	missense	D/A	421	Ap5z1	ENSMUST00000038699.12:c.1262A>C	ENSMUSP00000041863.8:p.Asp421Ala	H-2-Kb	9	9	3	LFASHFLSL	LFDSHFLSL	SMM	203.756	388.249	1.905	72	0.236	276.613	632.632	2.287	825.47	341.07	1414.4	280.8	388.2486909	203.7558094	439.7947088	272.4269072	M6_p20	1.057142857	1.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.267	72	0	0	NA	5qG2	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr6	38818458	38818458	T	C	ENSMUST00000161779.7	1	ENSMUSG00000061436	missense	K/R	292	Hipk2	ENSMUST00000161779.7:c.875A>G	ENSMUSP00000124133.1:p.Lys292Arg	H-2-Kb	9	7	5	LKQNRFSPL	LKQNKFSPL	NetMHC	346.05	529.23	1.529	162	0.086	459.514	702.894	1.53	529.23	346.05	2230.7	1526.9	755.2835049	504.7891366	650.5040428	414.2380608	M6_p20	-1.042857143	-1.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.114	162	0	0	NA	6qB1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.535377698	sgMsh2	cell line
chr6	27363252	27363252	A	G	ENSMUST00000115323.7	1	ENSMUSG00000024211	missense	Y/H	755	Grm8	ENSMUST00000115323.7:c.2263T>C	ENSMUSP00000110978.1:p.Tyr755His	H-2-Kb	9	7	5	CSLGHSILL	CSLGYSILL	SMM	204.696	164.101	0.802	244	0.176	364.907	235.996	0.647	182.09	365.69	295.7	809.6	164.1005362	204.6963035	289.9011913	364.1245828	M6_p20	1.642857143	1.642857143	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.185	244	0	0	NA	6qA3.1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.868814685	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	9	6	6	VSYTRLLVA	VSYTRILVA	NetMHCpan	129.9	163.6	1.259	117	0.171	176.155	270.535	1.536	712.71	415.25	163.6	129.9	323.6756285	203.287184	217.3952246	149.021867	M6_p20	1.014285714	1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.199	117	0	0	NA	6qB2.1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.934562823	sgMsh2	cell line
chr5	140634832	140634832	G	A	ENSMUST00000042661.7	1	ENSMUSG00000036565	missense	L/F	217	Ttyh3	ENSMUST00000042661.7:c.649C>T	ENSMUSP00000037447.3:p.Leu217Phe	H-2-Kb	9	5	7	LGYLGLFLL	LGYLGLLLL	SMM	335.05	374.205	1.117	31	0.097	406.321	414.153	1.019	567.64	450.19	454.1	458.6	374.2053566	335.0502914	369.1900603	362.4515823	M6_p20	2.328571429	2.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.136	31	0	0	NA	5qG2	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.638696201	sgMsh2	cell line
chr5	140634832	140634832	G	A	ENSMUST00000042661.7	1	ENSMUSG00000036565	missense	L/F	217	Ttyh3	ENSMUST00000042661.7:c.649C>T	ENSMUSP00000037447.3:p.Leu217Phe	H-2-Kb	9	3	9	RWLGYLGLF	RWLGYLGLL	SMM	276.128	163.723	0.593	31	0.097	485.165	256.043	0.528	270.4	552.26	342.1	1736.8	163.7231154	276.1277156	241.6851686	418.0709584	M6_p20	1.728571429	1.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.136	31	0	0	NA	5qG2	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.638696201	sgMsh2	cell line
chr6	57600007	57600007	T	C	ENSMUST00000031817.9	1	ENSMUSG00000029798	missense	L/P	235	Herc6	ENSMUST00000031817.9:c.704T>C	ENSMUSP00000031817.8:p.Leu235Pro	H-2-Db	9	6	6	GALKNPSVI	GALKNLSVI	NetMHC	13.46	7.99	0.594	223	0.081	47.099	27.26	0.579	7.99	13.46	16.8	37.5	48.2636319	70.24574131	37.71985373	56.6982951	M6_p20	0.385714286	0.385714286	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.084	223	0	0	NA	6qB3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.39448883	sgMsh2	cell line
chr6	87588585	87588585	G	T	ENSMUST00000204682.2	1	ENSMUSG00000049409	missense	L/I	93	Prokr1	ENSMUST00000204682.2:c.277C>A	ENSMUSP00000144999.1:p.Leu93Ile	H-2-Db	9	9	3	KKIRNLTNL	KKLRNLTNL	NetMHC	385.54	618.51	1.604	225	0.209	484.199	619.382	1.279	618.51	385.54	1829.6	1152.1	484.864067	433.1317299	620.2546088	535.2664216	M6_p20	-0.014285714	-0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.202	225	0	0	NA	6qD1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.94865171	sgMsh2	cell line
chr6	122850369	122850369	TA	T	ENSMUST00000042081.8	1	ENSMUSG00000040552	FS	P/X	296	C3ar1	ENSMUST00000042081.8:c.888del	ENSMUSP00000048092.8:p.Thr297LeufsTer30	H-2-Db	9	4	9	SAHTELFPL	SAHTELFPT	NetMHCpan	218.3	4631	21.214	196	0.128	409.612	4501.197	10.989	10902.8	576.21	4631	218.3	4371.394485	424.2481918	2802.65732	394.9753567	M6_p20	0.2	0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.132	196	0	0	NA	6qF2	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.619911018	sgMsh2	cell line
chr6	122850369	122850369	TA	T	ENSMUST00000042081.8	1	ENSMUSG00000040552	FS	P/X	296	C3ar1	ENSMUST00000042081.8:c.888del	ENSMUSP00000048092.8:p.Thr297LeufsTer30	H-2-Db	10	26	0	IMLTNSRMTI	NA	NetMHC	60.3	NA	NA	196	0.128	487.762	NA	NA	NA	60.3	NA	280.1	NA	695.4245209	NA	814.0854636	M6_p20	-0.542857143	0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.132	196	0	0	NA	6qF2	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.619911018	sgMsh2	cell line
chr6	90179503	90179503	T	C	ENSMUST00000228665.1	NA	ENSMUSG00000060816	missense	I/T	263	Vmn1r52	ENSMUST00000228665.1:c.788T>C	ENSMUSP00000154275.1:p.Ile263Thr	H-2-Kb	8	5	7	ISYSRTTL	ISYSRTIL	NetMHC	11.01	22.38	2.033	435	0.166	21.895	51.901	2.37	22.38	11.01	20.6	11.3	81.42166892	35.54184757	84.86722465	32.48927349	M6_p20	-0.714285714	-0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.168	435	0	0	NA	6qD1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.78897766	sgMsh2	cell line
chr6	69016689	69016689	A	G	ENSMUST00000103341.3	NA	ENSMUSG00000076540	missense	S/P	73	Igkv4-80	ENSMUST00000103341.3:c.217T>C	ENSMUSP00000100142.3:p.Ser73Pro	H-2-Kb	8	6	6	LIYSTPNL	LIYSTSNL	NetMHC	42.91	22.03	0.513	421	0.116	70.274	48.507	0.69	22.03	42.91	39.9	54.5	61.9070344	88.86689373	57.11366107	86.04784535	M6_p20	0.057142857	0.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.123	421	0	0	NA	6qC1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.577644358	sgMsh2	cell line
chr6	89870010	89870010	TG	T	ENSMUST00000226983.1	NA	ENSMUSG00000068231	FS	Q/X	165	Vmn1r43	ENSMUST00000226983.1:c.493del	ENSMUSP00000153713.1:p.Gln165AsnfsTer12	H-2-Kb	8	10	2	SNSWYQSL	NA	NetMHCpan	54.4	NA	NA	429	0.058	119.666	NA	NA	NA	62.02	NA	54.4	NA	177.3127641	NA	266.5262568	M6_p20	-1	-1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.055	429	0	0	NA	6qD1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.258296258	sgMsh2	cell line
chr6	122850369	122850369	TA	T	ENSMUST00000042081.8	1	ENSMUSG00000040552	FS	P/X	296	C3ar1	ENSMUST00000042081.8:c.888del	ENSMUSP00000048092.8:p.Thr297LeufsTer30	H-2-Kb	8	14	0	LVVIYTPM	NA	NetMHCpan	73	NA	NA	196	0.128	177.665	NA	NA	NA	100.8	NA	73	NA	344.9371732	NA	254.5305993	M6_p20	1.6	1.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.132	196	0	0	NA	6qF2	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.619911018	sgMsh2	cell line
chr6	124908510	124908510	CG	C	ENSMUST00000032217.1	1	ENSMUSG00000030124	FS	P/X	302	Lag3	ENSMUST00000032217.1:c.906del	ENSMUSP00000032217.1:p.Val303TrpfsTer45	H-2-Kb	8	16	0	VAILPFTL	NA	NetMHC	108.05	NA	NA	54	0.13	209.178	NA	NA	NA	108.05	NA	108.8	NA	309.5565516	NA	376.4783444	M6_p20	2.057142857	2.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.155	54	0	0	NA	6qF2	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.727925817	sgMsh2	cell line
chr6	124039164	124039164	A	C	ENSMUST00000032238.4	1	ENSMUSG00000096630	missense	M/L	196	Vmn2r26	ENSMUST00000032238.4:c.586A>C	ENSMUSP00000032238.3:p.Met196Leu	H-2-Kb	8	9	3	FSLHTAAL	FSMHTAAL	SMMPMBEC	137.956	181.861	1.318	451	0.177	181.639	226.185	1.245	236.87	213.4	215.5	305.7	257.4779247	149.8787285	181.861178	137.9558114	M6_p20	0.928571429	0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.178	451	0	0	NA	6qF2	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.835940616	sgMsh2	cell line
chr6	123815817	123815817	T	C	ENSMUST00000075095.6	5	ENSMUSG00000072780	missense	M/T	701	Vmn2r24	ENSMUST00000075095.6:c.2102T>C	ENSMUSP00000074602.5:p.Met701Thr	H-2-Kb	8	6	6	QMWMVTRL	QMWMVMRL	NetMHC	249.67	165.69	0.664	910	0.118	456.149	439.641	0.964	165.69	249.67	358.4	310.1	520.8827797	666.4076901	533.0156983	602.1989584	M6_p20	0.814285714	0.814285714	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.119	910	0	0	NA	6qF2	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.558859176	sgMsh2	cell line
chr6	124702305	124702305	A	G	ENSMUST00000004381.13	1	ENSMUSG00000004270	missense	T/A	286	Lpcat3	ENSMUST00000004381.13:c.856A>G	ENSMUSP00000004381.7:p.Thr286Ala	H-2-Kb	8	5	7	VLYKYVAC	VLYKYVTC	SMM	109.079	181.443	1.663	277	0.108	207.544	193.816	0.934	537.41	308.5	197.2	294.1	181.4429089	109.0787117	190.4320313	120.9873599	M6_p20	0.828571429	1.071428571	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.116	277	0	0	NA	6qF2	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.544770289	sgMsh2	cell line
chr6	87588585	87588585	G	T	ENSMUST00000204682.2	1	ENSMUSG00000049409	missense	L/I	93	Prokr1	ENSMUST00000204682.2:c.277C>A	ENSMUSP00000144999.1:p.Leu93Ile	H-2-Kb	8	10	2	KIRNLTNL	KLRNLTNL	SMM	278.445	1150.112	4.13	225	0.209	416.474	1652.446	3.968	3704.4	466.73	2052.5	1001	1150.111643	278.4453695	1252.391179	366.2182643	M6_p20	-0.014285714	-0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.202	225	0	0	NA	6qD1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.94865171	sgMsh2	cell line
chr6	124908510	124908510	CG	C	ENSMUST00000032217.1	1	ENSMUSG00000030124	FS	P/X	302	Lag3	ENSMUST00000032217.1:c.906del	ENSMUSP00000032217.1:p.Val303TrpfsTer45	H-2-Kb	8	24	0	RLWVWHRL	NA	SMMPMBEC	207.367	NA	NA	54	0.13	336.204	NA	NA	NA	1111.14	NA	304.5	NA	367.908651	NA	207.3671696	M6_p20	0.328571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.155	54	0	0	NA	6qF2	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.727925817	sgMsh2	cell line
chr6	89870010	89870010	TG	T	ENSMUST00000226983.1	NA	ENSMUSG00000068231	FS	Q/X	165	Vmn1r43	ENSMUST00000226983.1:c.493del	ENSMUSP00000153713.1:p.Gln165AsnfsTer12	H-2-Kb	9	9	3	SSNSWYQSL	NA	NetMHC	14.29	NA	NA	429	0.058	70.368	NA	NA	NA	14.29	NA	55.6	NA	85.13536455	NA	113.3052413	M6_p20	-1	-1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.055	429	0	0	NA	6qD1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.258296258	sgMsh2	cell line
chr6	89870010	89870010	TG	T	ENSMUST00000226983.1	NA	ENSMUSG00000068231	FS	Q/X	165	Vmn1r43	ENSMUST00000226983.1:c.493del	ENSMUSP00000153713.1:p.Gln165AsnfsTer12	H-2-Kb	9	12	0	SWYQSLPPL	NA	SMM	41.031	NA	NA	429	0.058	60.05	NA	NA	NA	48.2	NA	71.9	NA	41.03080144	NA	72.6524058	M6_p20	-0.171428571	-0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.055	429	0	0	NA	6qD1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.258296258	sgMsh2	cell line
chr6	103691644	103691644	A	G	ENSMUST00000066905.8	1	ENSMUSG00000030077	missense	E/G	446	Chl1	ENSMUST00000066905.8:c.1337A>G	ENSMUSP00000063933.6:p.Glu446Gly	H-2-Kb	9	5	7	SAFLHCGYF	SAFLHCEYF	NetMHCpan	46	94.3	2.05	148	0.081	82.781	133.169	1.609	124.07	66.91	94.3	46	142.2689086	98.65293264	152.8445649	102.6242509	M6_p20	1	1	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.093	148	0	0	NA	6qE1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.43675549	sgMsh2	cell line
chr6	124837668	124837668	T	A	ENSMUST00000024206.5	1	ENSMUSG00000023439	missense	K/M	89	Gnb3	ENSMUST00000024206.5:c.266A>T	ENSMUSP00000024206.5:p.Lys89Met	H-2-Kb	9	9	3	TNMVHAIPL	TNKVHAIPL	NetMHCpan	46.3	608.2	13.136	228	0.197	121.892	535.882	4.396	791.79	85.62	608.2	46.3	463.5643185	158.1648595	425.8434778	178.7516256	M6_p20	1.628571429	1.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	228	0	0	NA	6qF2	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.939259119	sgMsh2	cell line
chr6	124908510	124908510	CG	C	ENSMUST00000032217.1	1	ENSMUSG00000030124	FS	P/X	302	Lag3	ENSMUST00000032217.1:c.906del	ENSMUSP00000032217.1:p.Val303TrpfsTer45	H-2-Kb	9	17	0	AILPFTLRL	NA	NetMHCpan	45.3	NA	NA	54	0.13	185.425	NA	NA	NA	88.29	NA	45.3	NA	282.5595563	NA	326.7758854	M6_p20	1.057142857	2.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.155	54	0	0	NA	6qF2	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.727925817	sgMsh2	cell line
chr6	108399280	108399280	C	T	ENSMUST00000032192.8	1	ENSMUSG00000030102	missense	R/W	1235	Itpr1	ENSMUST00000032192.8:c.3703C>T	ENSMUSP00000032192.6:p.Arg1235Trp	H-2-Kb	9	9	3	IMWLAHEFL	IMRLAHEFL	NetMHCpan	173.3	364.8	2.105	103	0.262	275.443	622.207	2.259	738.74	227.21	364.8	173.3	566.3827268	323.6756285	678.0317017	326.7758854	M6_p20	0.657142857	0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	103	0	0	NA	6qE1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr6	78376435	78376435	G	A	ENSMUST00000089667.7	1	ENSMUSG00000068341	missense	H/Y	142	Reg3d	ENSMUST00000089667.7:c.424C>T	ENSMUSP00000087096.1:p.His142Tyr	H-2-Kb	9	10	2	AYHGYCAAL	AHHGYCAAL	NetMHC	233.75	211.3	0.904	246	0.114	376.342	460.876	1.225	211.3	233.75	464.4	454.2	563.7804345	406.5462879	457.3513865	346.1385739	M6_p20	0.714285714	0.714285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.126	246	0	0	NA	6qC3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.591733245	sgMsh2	cell line
chr6	124837668	124837668	T	A	ENSMUST00000024206.5	1	ENSMUSG00000023439	missense	K/M	89	Gnb3	ENSMUST00000024206.5:c.266A>T	ENSMUSP00000024206.5:p.Lys89Met	H-2-Kb	9	3	9	VWDTYTTNM	VWDTYTTNK	SMM	229.145	3163.079	13.804	228	0.197	308.787	7373.407	23.879	11332.92	314.01	17062.3	1071.2	3163.078717	229.1447967	3413.893746	303.5638135	M6_p20	-1.214285714	-0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	228	0	0	NA	6qF2	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.939259119	sgMsh2	cell line
chr6	123815817	123815817	T	C	ENSMUST00000075095.6	5	ENSMUSG00000072780	missense	M/T	701	Vmn2r24	ENSMUST00000075095.6:c.2102T>C	ENSMUSP00000074602.5:p.Met701Thr	H-2-Kb	9	8	4	WMVTRLSNV	WMVMRLSNV	SMMPMBEC	371.749	308.496	0.83	910	0.118	393.346	326.071	0.829	273.51	374.49	1055.2	1159.9	343.6449768	412.2019102	308.4963287	371.7491635	M6_p20	0.385714286	0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.119	910	0	0	NA	6qF2	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.558859176	sgMsh2	cell line
chr6	57360638	57360638	T	C	ENSMUST00000227186.1	NA	ENSMUSG00000115644	missense	I/M	247	Vmn1r17	ENSMUST00000227186.1:c.741A>G	ENSMUSP00000154334.1:p.Ile247Met	H-2-Kb	9	3	9	VMYWVDFIM	VMYWVDFII	SMM	115.641	218.328	1.888	617	0.182	275.792	430.03	1.559	602.28	400.49	1029	521.4	218.3282833	115.6405104	257.7804634	151.0949676	M6_p20	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.182	617	0	0	NA	6qB3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.854725798	sgMsh2	cell line
chr6	87588585	87588585	G	T	ENSMUST00000204682.2	1	ENSMUSG00000049409	missense	L/I	93	Prokr1	ENSMUST00000204682.2:c.277C>A	ENSMUSP00000144999.1:p.Leu93Ile	H-2-Kb	9	3	9	TALARYKKI	TALARYKKL	SMMPMBEC	242.801	105.015	0.433	225	0.209	406.444	119.207	0.293	88.89	408.21	133.4	665.8	162.970876	404.6783774	105.0146768	242.8007366	M6_p20	-0.5	-0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.202	225	0	0	NA	6qD1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.94865171	sgMsh2	cell line
chr6	122850369	122850369	TA	T	ENSMUST00000042081.8	1	ENSMUSG00000040552	FS	P/X	296	C3ar1	ENSMUST00000042081.8:c.888del	ENSMUSP00000048092.8:p.Thr297LeufsTer30	H-2-Kb	9	4	9	SAHTELFPL	SAHTELFPT	NetMHCpan	438.2	6282	14.336	196	0.128	442.376	4341.538	9.814	5757.24	443.07	6282	438.2	2553.347944	441.6823044	2925.83614	582.4383998	M6_p20	0.2	0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.132	196	0	0	NA	6qF2	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.619911018	sgMsh2	cell line
chr6	82091907	82091907	TC	T	ENSMUST00000042974.14	1	ENSMUSG00000035104	FS	P/X	72	Eva1a	ENSMUST00000042974.14:c.217del	ENSMUSP00000037422.8:p.Arg73GlyfsTer39	H-2-Kb	9	28	0	RMVARTQPL	NA	SMM	350.841	NA	NA	77	0.156	370.097	NA	NA	NA	464.57	NA	369.3	NA	350.8407252	NA	370.8941642	M6_p20	-0.071428571	-0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.139	77	0	0	NA	6qC3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.652785087	sgMsh2	cell line
chr6	90179503	90179503	T	C	ENSMUST00000228665.1	NA	ENSMUSG00000060816	missense	I/T	263	Vmn1r52	ENSMUST00000228665.1:c.788T>C	ENSMUSP00000154275.1:p.Ile263Thr	H-2-Kb	9	5	7	ISYSRTTLQ	ISYSRTILQ	SMM	93.134	98.426	1.057	435	0.166	401.692	520.741	1.296	926.07	698.37	2548.2	2161.6	98.4260372	93.13437404	115.411743	105.0146768	M6_p20	-1.1	-0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.168	435	0	0	NA	6qD1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.78897766	sgMsh2	cell line
chr6	78376435	78376435	G	A	ENSMUST00000089667.7	1	ENSMUSG00000068341	missense	H/Y	142	Reg3d	ENSMUST00000089667.7:c.424C>T	ENSMUSP00000087096.1:p.His142Tyr	H-2-Kb	10	9	3	SAYHGYCAAL	SAHHGYCAAL	NetMHC	16.5	239.43	14.511	246	0.114	357.454	1524.234	4.264	239.43	16.5	388.6	23.3	2973.924919	793.1037439	2659.867482	691.6079869	M6_p20	0.714285714	0.714285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.126	246	0	0	NA	6qC3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.591733245	sgMsh2	cell line
chr6	142003500	142003500	A	G	ENSMUST00000181791.7	5	ENSMUSG00000079263	missense	L/P	50	Gm6614	ENSMUST00000181791.7:c.149T>C	ENSMUSP00000137696.1:p.Leu50Pro	H-2-Db	9	6	6	FGIGNPLLI	FGIGNLLLI	NetMHCpan	55.6	40	0.719	208	0.12	115.692	74.539	0.644	51.9	85.31	40	55.6	109.8044649	159.8159056	97.17845721	146.0730172	M6_p20	1.585714286	1.585714286	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.134	208	0	0	NA	6qG2	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.62930361	sgMsh2	cell line
chr7	10447363	10447363	G	A	ENSMUST00000055964.7	NA	ENSMUSG00000046716	missense	V/M	185	Vmn1r67	ENSMUST00000055964.7:c.553G>A	ENSMUSP00000060746.4:p.Val185Met	H-2-Db	9	7	5	TALVMCPEI	TALVVCPEI	SMMPMBEC	112.091	615.985	5.495	546	0.148	418.092	2187.778	5.233	11128.06	1102.55	3746.6	698.9	628.955617	137.2840238	615.9848061	112.0908081	M6_p20	1.685714286	1.7	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.143	546	0	0	NA	7qA1	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.67157027	sgMsh2	cell line
chr7	25272796	25272796	A	G	ENSMUST00000169266.7	1	ENSMUSG00000005442	missense	I/V	651	Cic	ENSMUST00000169266.7:c.1951A>G	ENSMUSP00000132351.1:p.Ile651Val	H-2-Db	10	2	10	FSPINASPVV	FSPINASPVI	NetMHC	14.9	8.41	0.564	28	0.25	465.206	229.143	0.493	8.41	14.9	34.4	92.4	423.8869047	838.0115415	542.8376978	1013.141255	M6_p20	1.257142857	1.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.238	28	0	0	NA	7qA3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr7	5410476	5410476	T	C	ENSMUST00000108569.3	1	ENSMUSG00000078808	missense	I/V	252	Vmn1r58	ENSMUST00000108569.3:c.754A>G	ENSMUSP00000104209.2:p.Ile252Val	H-2-Kb	8	11	1	VSFVESRL	ISFVESRL	SMMPMBEC	11.634	11.343	0.975	201	0.164	14.49	14.995	1.035	14.39	13.68	15.6	15.3	17.32766328	16.24575876	11.3433152	11.63429308	M6_p20	0.171428571	0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.169	201	0	0	NA	7qA1	chr7-3489139-7214089	4	2	2	0.93	4.367554902	NA	1	0.793673955	sgMsh2	cell line
chr6	132980733	132980733	A	G	ENSMUST00000067539.3	NA	ENSMUSG00000062528	missense	L/P	78	Tas2r109	ENSMUST00000067539.3:c.233T>C	ENSMUSP00000069300.3:p.Leu78Pro	H-2-Kb	8	8	4	ISSPYPYL	ISSLYPYL	NetMHC	20.58	8.61	0.418	334	0.09	36.815	19.424	0.528	8.61	20.58	11.7	21.9	27.14813499	51.72970479	28.23189304	64.82462304	M6_p20	-0.514285714	-0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.097	334	0	0	NA	6qG1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.455540673	sgMsh2	cell line
chr6	148846202	148846202	T	A	ENSMUST00000111569.8	1	ENSMUSG00000030309	missense	Q/L	805	Caprin2	ENSMUST00000111569.8:c.2414A>T	ENSMUSP00000107195.2:p.Gln805Leu	H-2-Kb	8	5	7	SSGNYSLL	SSGNYSQL	NetMHC	34.49	38.02	1.102	128	0.203	68.509	49.962	0.729	38.02	34.49	149.3	135.8	53.17897962	68.82401428	46.74552051	68.19303192	M6_p20	0.114285714	0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.187	128	0	0	NA	6qG3	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	sgMsh2	cell line
chr7	6461136	6461136	T	C	ENSMUST00000214301.2	5	ENSMUSG00000048620	missense	V/A	209	Olfr1336	ENSMUST00000214301.2:c.626T>C	ENSMUSP00000150162.1:p.Val209Ala	H-2-Kb	8	10	2	IAILWGSL	IVILWGSL	NetMHCpan	26.7	38.1	1.427	461	0.069	48.129	52.985	1.101	49.64	35.34	38.1	26.7	82.36448742	81.04757034	56.33003227	60.91720937	M6_p20	1.685714286	1.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.073	461	0	0	NA	7qA1	chr7-3489139-7214089	4	2	2	0.93	4.367554902	NA	1	0.342829578	sgMsh2	cell line
chr7	18681013	18681013	A	G	ENSMUST00000076677.3	5	ENSMUSG00000063305	missense	I/T	319	Psg20	ENSMUST00000076677.3:c.956T>C	ENSMUSP00000075973.3:p.Ile319Thr	H-2-Kb	8	5	7	STPYFRTV	STPYFRIV	NetMHC	39.77	154.5	3.885	475	0.175	151.333	360.148	2.38	154.5	39.77	249.6	97.2	470.6954498	205.466016	680.361923	260.4593785	M6_p20	-0.257142857	-0.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.177	475	0	0	NA	7qA3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.83124432	sgMsh2	cell line
chr7	19159634	19159634	T	C	ENSMUST00000094790.4	5	ENSMUSG00000030406	missense	T/A	341	Gipr	ENSMUST00000094790.4:c.1021A>G	ENSMUSP00000092384.3:p.Thr341Ala	H-2-Kb	8	8	4	STLALVPL	STLTLVPL	NetMHC	73.27	63.08	0.861	74	0.068	87	82.104	0.944	63.08	73.27	93.4	107.6	80.11982647	81.79749427	84.08915726	92.20192747	M6_p20	2.157142857	2.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.102	74	0	0	NA	7qA3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.479022151	sgMsh2	cell line
chr7	4469203	4469203	GA	G	ENSMUST00000163893.7	1	ENSMUSG00000006154	FS	R/X	22	Eps8l1	ENSMUST00000163893.7:c.69del	ENSMUSP00000125840.1:p.Lys23AsnfsTer56	H-2-Kb	8	6	7	SIYEQRNV	SIYEQRKR	SMM	80.305	2021.808	25.177	299	0.07	140.518	10629.403	75.645	16431.11	121.91	19443.2	292.4	2021.808416	80.30452175	4827.696948	159.1255801	M6_p20	-1.085714286	-1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.071	299	0	0	NA	7qA1	chr7-3489139-7214089	4	2	2	0.93	4.367554902	NA	1	0.333436987	sgMsh2	cell line
chr7	5075496	5075496	T	C	ENSMUST00000209099.1	1	ENSMUSG00000030435	missense	L/P	358	U2af2	ENSMUST00000209099.1:c.1073T>C	ENSMUSP00000147013.1:p.Leu358Pro	H-2-Kb	8	9	3	VTPQVPGL	VTLQVPGL	SMM	233.744	99.71	0.427	107	0.14	357.713	130.504	0.365	134.9	391.28	180.8	683.6	99.71029474	233.7437461	126.107234	324.1455024	M6_p20	0.028571429	0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.143	107	0	0	NA	7qA1	chr7-3489139-7214089	4	2	2	0.93	4.367554902	NA	1	0.67157027	sgMsh2	cell line
chr6	125980155	125980155	A	G	ENSMUST00000160496.7	1	ENSMUSG00000038115	missense	K/R	629	Ano2	ENSMUST00000160496.7:c.1886A>G	ENSMUSP00000125303.1:p.Lys629Arg	H-2-Kb	8	6	6	KAFLLRFV	KAFLLKFV	NetMHCpan	272.4	547.6	2.01	332	0.048	351.17	682.716	1.944	1229.78	480.77	547.6	272.4	681.9303192	330.1718172	683.502331	372.1688324	M6_p20	2.1	2.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.052	332	0	0	NA	6qF3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.244207371	sgMsh2	cell line
chr6	148846202	148846202	T	A	ENSMUST00000111569.8	1	ENSMUSG00000030309	missense	Q/L	805	Caprin2	ENSMUST00000111569.8:c.2414A>T	ENSMUSP00000107195.2:p.Gln805Leu	H-2-Kb	8	7	5	GNYSLLQL	GNYSQLQL	NetMHCpan	200.9	585.8	2.916	128	0.203	311.197	581.775	1.869	1886.79	647.72	585.8	200.9	555.5715525	352.1599796	577.750061	270.2340064	M6_p20	0.328571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.187	128	0	0	NA	6qG3	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	sgMsh2	cell line
chr7	24908411	24908411	A	G	ENSMUST00000098683.10	1	ENSMUSG00000040940	missense	E/G	69	Arhgef1	ENSMUST00000098683.10:c.206A>G	ENSMUSP00000096280.4:p.Glu69Gly	H-2-Kb	8	6	6	VALQFGPG	VALQFEPG	SMM	70.915	168.167	2.371	32	0.25	436.511	1319.111	3.022	2396.82	776.03	3737.4	1563.1	168.1666993	70.91530907	241.4015198	96.99291239	M6_p20	0.357142857	1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.273	32	0	0	NA	7qA3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr7	13028552	13028552	C	A	ENSMUST00000005705.7	1	ENSMUSG00000005566	missense	L/M	368	Trim28	ENSMUST00000005705.7:c.1102C>A	ENSMUSP00000005705.7:p.Leu368Met	H-2-Kb	8	9	3	KKMIYFQL	KKLIYFQL	SMMPMBEC	242.516	183.967	0.759	81	0.049	424.719	506.319	1.192	828.67	832.15	1033.4	533.4	183.9670312	316.0385059	183.9670312	242.5157786	M6_p20	0.614285714	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.074	81	0	0	NA	7qA1	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.347525874	sgMsh2	cell line
chr6	134520435	134520435	A	C	ENSMUST00000032322.14	1	ENSMUSG00000030201	missense	L/R	203	Lrp6	ENSMUST00000032322.14:c.608T>G	ENSMUSP00000032322.8:p.Leu203Arg	H-2-Kb	9	11	1	RNFIHKSNL	LNFIHKSNL	NetMHCpan	24.8	15.1	0.609	217	0.069	96.035	60.832	0.633	39.77	43.78	15.1	24.8	87.5205423	148.2893631	81.893607	152.4930322	M6_p20	-0.042857143	-0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.075	217	0	0	NA	6qG1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.35222217	sgMsh2	cell line
chr7	23541176	23541176	A	G	ENSMUST00000098704.2	NA	ENSMUSG00000074291	missense	I/V	153	Vmn1r168	ENSMUST00000098704.2:c.457A>G	ENSMUSP00000096301.2:p.Ile153Val	H-2-Kb	9	5	7	ILYNVYVPM	ILYNVYIPM	NetMHCpan	31.9	38.5	1.207	513	0.094	84.52	90.886	1.075	75.05	72.38	38.5	31.9	136.8075294	139.6722084	106.721028	96.66071427	M6_p20	0.371428571	1.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.092	513	0	0	NA	7qA3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.432059195	sgMsh2	cell line
chr6	148846202	148846202	T	A	ENSMUST00000111569.8	1	ENSMUSG00000030309	missense	Q/L	805	Caprin2	ENSMUST00000111569.8:c.2414A>T	ENSMUSP00000107195.2:p.Gln805Leu	H-2-Kb	9	4	8	VSSGNYSLL	VSSGNYSQL	NetMHC	73.92	85.39	1.155	128	0.203	125.362	135.468	1.081	85.39	73.92	186	161.8	151.7434661	119.4290561	119.1927939	131.2955479	M6_p20	0.114285714	0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.187	128	0	0	NA	6qG3	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	sgMsh2	cell line
chr7	6461136	6461136	T	C	ENSMUST00000214301.2	5	ENSMUSG00000048620	missense	V/A	209	Olfr1336	ENSMUST00000214301.2:c.626T>C	ENSMUSP00000150162.1:p.Val209Ala	H-2-Kb	9	10	2	IAILWGSLL	IVILWGSLL	NetMHC	79.58	110.35	1.387	461	0.069	134.3	179.951	1.34	110.35	79.58	151.4	83.2	208.5018919	185.4001153	225.0349638	194.6480243	M6_p20	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.073	461	0	0	NA	7qA1	chr7-3489139-7214089	4	2	2	0.93	4.367554902	NA	1	0.342829578	sgMsh2	cell line
chr7	5410476	5410476	T	C	ENSMUST00000108569.3	1	ENSMUSG00000078808	missense	I/V	252	Vmn1r58	ENSMUST00000108569.3:c.754A>G	ENSMUSP00000104209.2:p.Ile252Val	H-2-Kb	9	5	7	ITILFHVSF	ITILFHISF	NetMHC	88.07	93.98	1.067	201	0.164	134.087	152.688	1.139	93.98	88.07	188.8	133.2	156.3543614	159.628341	149.021867	134.9739632	M6_p20	2.014285714	2.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.169	201	0	0	NA	7qA1	chr7-3489139-7214089	4	2	2	0.93	4.367554902	NA	1	0.793673955	sgMsh2	cell line
chr6	134484391	134484391	T	G	ENSMUST00000032322.14	1	ENSMUSG00000030201	missense	E/A	701	Lrp6	ENSMUST00000032322.14:c.2102A>C	ENSMUSP00000032322.8:p.Glu701Ala	H-2-Kb	9	4	8	SALEHVVAF	SALEHVVEF	NetMHC	346.5	552.55	1.595	170	0.165	444.167	549.223	1.237	552.55	346.5	572.2	399.4	545.8961105	515.3591605	539.8212792	488.9337312	M6_p20	1.442857143	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.192	170	0	0	NA	6qG1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.901688754	sgMsh2	cell line
chr6	127146068	127146068	G	T	ENSMUST00000000188.11	1	ENSMUSG00000000184	missense	L/M	175	Ccnd2	ENSMUST00000000188.11:c.523C>A	ENSMUSP00000000188.8:p.Leu175Met	H-2-Kb	9	10	2	SMIRKHAQT	SLIRKHAQT	SMMPMBEC	369.19	2209.276	5.984	101	0.079	493.24	4167.215	8.449	4047.86	425.29	6721.4	2796.9	4286.570788	561.1900987	2209.276129	369.1900603	M6_p20	-1.357142857	-0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.079	101	0	0	NA	6qF3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.371007352	sgMsh2	cell line
chr7	80463793	80463793	G	T	ENSMUST00000170315.2	1	ENSMUSG00000030528	missense	A/D	1252	Blm	ENSMUST00000170315.2:c.3755C>A	ENSMUSP00000127995.1:p.Ala1252Asp	H-2-Db	9	5	7	FNIFNTDTL	FNIFNTATL	NetMHC	9.67	16.74	1.731	106	0.085	33.938	52.94	1.56	16.74	9.67	26.7	15.2	79.18082091	52.67687464	88.0176968	59.91975101	M6_p20	0.385714286	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.091	106	0	0	NA	7qD2	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.427362899	sgMsh2	cell line
chr7	81101095	81101095	T	C	ENSMUST00000107348.1	1	ENSMUSG00000038763	missense	W/R	1538	Alpk3	ENSMUST00000107348.1:c.4612T>C	ENSMUSP00000102971.1:p.Trp1538Arg	H-2-Db	9	9	3	YQRTNGSFL	YQWTNGSFL	NetMHCpan	123.2	26.5	0.215	77	0.117	312.704	56.356	0.18	8.22	131.53	26.5	123.2	91.33137583	493.878363	86.21245256	572.2291797	M6_p20	-0.471428571	-0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.122	77	0	0	NA	7qD3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.572948062	sgMsh2	cell line
chr7	26611187	26611187	T	C	ENSMUST00000228367.1	NA	ENSMUSG00000091924	missense	M/V	298	Vmn1r185	ENSMUST00000228367.1:c.892A>G	ENSMUSP00000154816.1:p.Met298Val	H-2-Db	9	8	4	YSLVSRFNL	YSLMSRFNL	NetMHC	136.82	215.91	1.578	207	0.024	299.155	452.516	1.513	215.91	136.82	303	280.9	602.0325877	317.4095578	657.007005	372.8807814	M6_p20	0.828571429	0.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.031	207	0	0	NA	7qA3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.145585163	sgMsh2	cell line
chr7	86488673	86488673	T	C	ENSMUST00000217110.1	5	ENSMUSG00000062878	missense	S/G	293	Olfr298	ENSMUST00000217110.1:c.877A>G	ENSMUSP00000150228.1:p.Ser293Gly	H-2-Db	9	6	6	YSLRNGDVK	YSLRNSDVK	SMMPMBEC	155.443	160.905	1.035	239	0.146	236.8	279.325	1.18	384.22	301.96	2214.7	2374.5	174.4295257	171.6405905	160.9051705	155.4425814	M6_p20	-1.114285714	-0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.143	239	0	0	NA	7qD3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.67157027	sgMsh2	cell line
chr7	66784798	66784798	T	C	ENSMUST00000066475.10	1	ENSMUSG00000030510	missense	W/R	216	Cers3	ENSMUST00000066475.10:c.646T>C	ENSMUSP00000069238.8:p.Trp216Arg	H-2-Kb	8	8	4	SQYRYYIL	SQYWYYIL	NetMHC	4.27	6.01	1.407	546	0.092	11.074	15.356	1.387	6.01	4.27	10.4	7.4	20.3114066	14.74823333	31.82291802	20.73671696	M6_p20	-0.514285714	-0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.096	546	0	0	NA	7qC	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.450844377	sgMsh2	cell line
chr7	29225257	29225257	A	G	ENSMUST00000085818.5	1	ENSMUSG00000046410	missense	Y/H	241	Kcnk6	ENSMUST00000085818.5:c.721T>C	ENSMUSP00000082975.4:p.Tyr241His	H-2-Kb	8	9	3	TAHLFLGL	TAYLFLGL	NetMHCpan	18.5	3.7	0.2	73	0.164	49.985	5.299	0.106	3.02	26.9	3.7	18.5	6.898267002	81.23440428	7.173646964	73.07015019	M6_p20	1.771428571	1.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	73	0	0	NA	7qB1	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.939259119	sgMsh2	cell line
chr7	28320255	28320255	A	G	ENSMUST00000209141.1	1	ENSMUSG00000003435	missense	F/L	497	Supt5	ENSMUST00000209141.1:c.1489T>C	ENSMUSP00000147164.1:p.Phe497Leu	H-2-Kb	8	11	1	LVILFSDL	FVILFSDL	NetMHCpan	33.8	63.7	1.885	176	0.034	68.106	75.272	1.105	40.58	34.18	63.7	33.8	93.70008827	130.2386842	86.84403626	102.0328459	M6_p20	2.114285714	2.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.046	176	0	0	NA	7qA3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.216029597	sgMsh2	cell line
chr7	46259908	46259908	T	C	ENSMUST00000164538.1	5	ENSMUSG00000009487	missense	S/P	601	Otog	ENSMUST00000164538.1:c.1801T>C	ENSMUSP00000130949.1:p.Ser601Pro	H-2-Kb	8	9	3	LSPVFLRV	LSSVFLRV	NetMHC	38.96	344.21	8.835	158	0.089	104.525	331.586	3.172	344.21	38.96	293.5	77	380.8377582	142.1477533	318.9627742	132.0504848	M6_p20	1.157142857	1.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.097	158	0	0	NA	7qB3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.455540673	sgMsh2	cell line
chr7	27240043	27240043	A	G	ENSMUST00000108378.9	1	ENSMUSG00000003762	missense	N/S	166	Coq8b	ENSMUST00000108378.9:c.497A>G	ENSMUSP00000104015.3:p.Asn166Ser	H-2-Kb	8	11	1	SSFISPQL	NSFISPQL	NetMHCpan	37.1	365.8	9.86	149	0.128	46.041	356.964	7.753	1095.41	41.18	365.8	37.1	323.3999884	50.90260401	348.1288376	61.33946729	M6_p20	0.628571429	0.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.148	149	0	0	NA	7qA3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.695051748	sgMsh2	cell line
chr7	41837597	41837597	T	C	ENSMUST00000171671.2	5	ENSMUSG00000090383	missense	T/A	625	Vmn2r58	ENSMUST00000171671.2:c.1873A>G	ENSMUSP00000126966.1:p.Thr625Ala	H-2-Kb	8	10	2	RALSYILL	RTLSYILL	NetMHCpan	43.9	45.4	1.034	442	0.048	69.404	53.299	0.768	43.72	44.24	45.4	43.9	61.19839043	94.56708451	66.18201718	104.6501849	M6_p20	2.228571429	2.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.051	442	0	0	NA	7qB3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.239511075	sgMsh2	cell line
chr7	29061567	29061567	T	G	ENSMUST00000179893.8	5	ENSMUSG00000030592	missense	E/A	3210	Ryr1	ENSMUST00000179893.8:c.9629A>C	ENSMUSP00000137123.1:p.Glu3210Ala	H-2-Kb	8	5	7	VAFLEPAL	VAFLEPEL	SMMPMBEC	62.336	172.878	2.773	56	0.125	71.002	166.794	2.349	160.71	73.81	135.6	77.4	202.1808416	68.19303192	172.8781076	62.33615346	M6_p20	1.271428571	1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.138	56	0	0	NA	7qB1	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.648088792	sgMsh2	cell line
chr7	46287691	46287691	C	T	ENSMUST00000164538.1	5	ENSMUSG00000009487	missense	P/L	1608	Otog	ENSMUST00000164538.1:c.4823C>T	ENSMUSP00000130949.1:p.Pro1608Leu	H-2-Kb	8	11	1	LIPRFPLM	PIPRFPLM	NetMHC	74.61	3822.18	51.229	201	0.189	250.668	3165.294	12.627	3822.18	74.61	2849.3	115.2	2683.737286	386.1357391	3481.288376	409.9585987	M6_p20	0.757142857	1.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.204	201	0	0	NA	7qB3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.958044301	sgMsh2	cell line
chr7	29225257	29225257	A	G	ENSMUST00000085818.5	1	ENSMUSG00000046410	missense	Y/H	241	Kcnk6	ENSMUST00000085818.5:c.721T>C	ENSMUSP00000082975.4:p.Tyr241His	H-2-Kb	8	5	7	KVLVTAHL	KVLVTAYL	NetMHC	175.61	259.86	1.48	73	0.164	245.282	288.63	1.177	259.86	175.61	317.4	242.4	323.3999884	338.6413603	255.1173529	248.1646968	M6_p20	1.985714286	1.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	73	0	0	NA	7qB1	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.939259119	sgMsh2	cell line
chr7	86269480	86269480	A	G	ENSMUST00000217724.1	5	ENSMUSG00000057540	missense	L/S	103	Olfr310	ENSMUST00000217724.1:c.308T>C	ENSMUSP00000151989.1:p.Leu103Ser	H-2-Kb	8	8	4	FSFSFCAC	FSFLFCAC	SMM	54.418	44.539	0.818	285	0.161	127.801	128.47	1.005	200.74	186.46	446.3	218.3	44.53895263	54.41767718	56.20047679	69.1416915	M6_p20	1.542857143	1.585714286	FALSE	TRUE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.157	285	0	0	NA	7qD3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.737318408	sgMsh2	cell line
chr7	83618603	83618603	CA	C	ENSMUST00000039317.13	1	ENSMUSG00000038540	FS	S/X	758	Tmc3	ENSMUST00000039317.13:c.2276del	ENSMUSP00000046028.7:p.Lys759SerfsTer20	H-2-Kb	8	11	2	SSQRLSKL	NA	SMM	221.177	NA	NA	53	0.113	245.789	NA	NA	NA	236.46	NA	774.2	NA	221.1770188	NA	255.1173529	M6_p20	-0.842857143	-0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.135	53	0	0	NA	7qD3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.633999905	sgMsh2	cell line
chr7	26611187	26611187	T	C	ENSMUST00000228367.1	NA	ENSMUSG00000091924	missense	M/V	298	Vmn1r185	ENSMUST00000228367.1:c.892A>G	ENSMUSP00000154816.1:p.Met298Val	H-2-Kb	8	4	8	FMRSYSLV	FMRSYSLM	NetMHC	238.94	166.52	0.697	207	0.024	450.026	344.108	0.765	166.52	238.94	202.1	466.8	486.1160944	433.2514252	558.1359543	516.1072977	M6_p20	0.357142857	0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.031	207	0	0	NA	7qA3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.145585163	sgMsh2	cell line
chr7	85222219	85222219	T	C	ENSMUST00000061074.9	5	ENSMUSG00000096861	missense	S/G	619	Vmn2r68	ENSMUST00000061074.9:c.1855A>G	ENSMUSP00000129411.1:p.Ser619Gly	H-2-Kb	8	8	4	QTLGYVLL	QTLSYVLL	SMM	209.768	91.147	0.435	290	0.134	235.525	83.173	0.353	53.12	242.55	75.2	228.5	91.14650073	209.7683683	119.0529058	275.892567	M6_p20	1.885714286	1.885714286	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.15	290	0	0	NA	7qD3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.704444339	sgMsh2	cell line
chr7	46033961	46033961	T	C	ENSMUST00000033121.6	1	ENSMUSG00000030835	missense	S/P	44	Nomo1	ENSMUST00000033121.6:c.130T>C	ENSMUSP00000033121.5:p.Ser44Pro	H-2-Kb	8	8	4	INYPLIEI	INYSLIEI	NetMHCpan	77.5	43.5	0.561	42	0.214	353.93	215.929	0.61	146.27	262.47	43.5	77.5	285.5880296	445.3895263	301.1202761	562.0047679	M6_p20	0.414285714	0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.23	42	0	0	NA	7qB3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr7	42047016	42047016	T	C	ENSMUST00000168489.2	5	ENSMUSG00000092032	missense	I/V	101	Vmn2r59	ENSMUST00000168489.2:c.301A>G	ENSMUSP00000131856.1:p.Ile101Val	H-2-Kb	8	11	1	VGYGIYNI	IGYGIYNI	NetMHCpan	68.1	66.5	0.977	98	0.122	316.229	328.125	1.038	319.94	287.52	66.5	68.1	419.5077612	393.3145385	336.3101696	344.9371732	M6_p20	0.3	0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.134	98	0	0	NA	7qB3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.62930361	sgMsh2	cell line
chr7	30057402	30057402	A	G	ENSMUST00000080834.14	5	ENSMUSG00000098022	missense	L/P	115	Zfp82	ENSMUST00000080834.14:c.344T>C	ENSMUSP00000079647.7:p.Leu115Pro	H-2-Kb	8	5	7	SGLKSLPL	SGLKSLLL	NetMHC	384.78	1345.27	3.496	43	0.116	478.592	1371.785	2.866	1345.27	384.78	1398.3	687.5	1139.567356	430.2689433	1451.242539	526.9143181	M6_p20	0.671428571	0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.167	43	0	0	NA	7qB1	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.784281364	sgMsh2	cell line
chr7	55979873	55979873	A	G	ENSMUST00000052204.5	1	ENSMUSG00000047037	missense	L/P	164	Nipa1	ENSMUST00000052204.5:c.491T>C	ENSMUSP00000053871.5:p.Leu164Pro	H-2-Kb	8	8	4	IVLPMLLL	IVLLMLLL	NetMHCpan	194	302.9	1.561	68	0.206	389.679	217.781	0.559	244.69	427.5	302.9	194	190.8710225	363.6972355	181.0256018	415.6616909	M6_p20	2.814285714	2.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.172	68	0	0	NA	7qB5	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.807762842	sgMsh2	cell line
chr7	86269480	86269480	A	G	ENSMUST00000217724.1	5	ENSMUSG00000057540	missense	L/S	103	Olfr310	ENSMUST00000217724.1:c.308T>C	ENSMUSP00000151989.1:p.Leu103Ser	H-2-Kb	8	6	6	QIFSFSFC	QIFSFLFC	SMM	150.224	243.635	1.622	285	0.161	367.79	1091.668	2.968	2008.42	489.69	1776.2	513.2	243.6351806	150.2242346	407.1364636	245.8895091	M6_p20	1.971428571	1.971428571	TRUE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.157	285	0	0	NA	7qD3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.737318408	sgMsh2	cell line
chr7	86269480	86269480	A	G	ENSMUST00000217724.1	5	ENSMUSG00000057540	missense	L/S	103	Olfr310	ENSMUST00000217724.1:c.308T>C	ENSMUSP00000151989.1:p.Leu103Ser	H-2-Kb	9	8	4	FSFSFCACV	FSFLFCACV	NetMHC	21.87	27.03	1.236	285	0.161	92.895	118.99	1.281	27.03	21.87	164.9	64.7	123.6260519	121.0904798	114.3536418	131.9015807	M6_p20	2.257142857	2.257142857	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.157	285	0	0	NA	7qD3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.737318408	sgMsh2	cell line
chr7	26611187	26611187	T	C	ENSMUST00000228367.1	NA	ENSMUSG00000091924	missense	M/V	298	Vmn1r185	ENSMUST00000228367.1:c.892A>G	ENSMUSP00000154816.1:p.Met298Val	H-2-Kb	9	11	1	VSRFNLAHL	MSRFNLAHL	NetMHC	34.25	88.62	2.587	207	0.024	91.603	217.283	2.372	88.62	34.25	130.4	64.6	304.1655332	118.6069123	327.5291816	126.5464598	M6_p20	0.142857143	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.031	207	0	0	NA	7qA3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.145585163	sgMsh2	cell line
chr7	25630422	25630422	G	T	ENSMUST00000205808.1	5	ENSMUSG00000060376	missense	P/H	92	Bckdha	ENSMUST00000205808.1:c.275C>A	ENSMUSP00000146018.1:p.Pro92His	H-2-Kb	9	10	5	RSWKHLSRL	RSWKPLSRL	NetMHCpan	40.3	284.5	7.06	28	0.214	90.509	379.431	4.192	202.73	43.85	284.5	40.3	474.3621186	146.9298381	571.8077009	137.1671136	M6_p20	-0.814285714	-0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.235	28	0	0	NA	7qA3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr7	45618973	45618973	A	C	ENSMUST00000008605.5	1	ENSMUSG00000008461	missense	E/A	117	Fut1	ENSMUST00000008605.5:c.350A>C	ENSMUSP00000008605.5:p.Glu117Ala	H-2-Kb	9	8	4	IQPAMHAAL	IQPEMHAAL	NetMHC	48.29	53.37	1.105	111	0.099	495.39	457.032	0.923	53.37	48.29	240.7	206.9	680.9418088	837.7414421	673.3641643	783.8807509	M6_p20	0.9	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.132	111	0	0	NA	7qB3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.619911018	sgMsh2	cell line
chr7	45632407	45632407	C	A	ENSMUST00000057927.9	1	ENSMUSG00000044562	missense	R/S	445	Rasip1	ENSMUST00000057927.9:c.1333C>A	ENSMUSP00000062429.7:p.Arg445Ser	H-2-Kb	9	10	2	VSPSRGAPV	VRPSRGAPV	NetMHC	66.6	2171.37	32.603	29	0.103	229.852	1692.729	7.364	2171.37	66.6	7410.3	226.3	1018.849414	233.4049166	1214.087534	263.1782532	M6_p20	-0.414285714	-0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.11	29	0	0	NA	7qB3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.516592515	sgMsh2	cell line
chr7	26611187	26611187	T	C	ENSMUST00000228367.1	NA	ENSMUSG00000091924	missense	M/V	298	Vmn1r185	ENSMUST00000228367.1:c.892A>G	ENSMUSP00000154816.1:p.Met298Val	H-2-Kb	9	3	9	VFMRSYSLV	VFMRSYSLM	NetMHC	86.79	66.95	0.771	207	0.024	195.423	101.978	0.522	66.95	86.79	103.7	265	100.2559138	171.4391481	132.8158787	219.4067579	M6_p20	0.357142857	0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.031	207	0	0	NA	7qA3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.145585163	sgMsh2	cell line
chr7	86230157	86230157	G	T	ENSMUST00000165771.1	5	ENSMUSG00000091239	missense	L/I	312	Vmn2r76	ENSMUST00000165771.1:c.934C>A	ENSMUSP00000127309.1:p.Leu312Ile	H-2-Kb	9	11	1	IFNSFHGTL	LFNSFHGTL	NetMHC	90.6	323.06	3.566	168	0.095	213.074	517.132	2.427	323.06	90.6	536.4	171.4	497.86317	254.7475407	565.2622723	289.2344371	M6_p20	-0.285714286	0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.097	168	0	0	NA	7qD3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.455540673	sgMsh2	cell line
chr7	29225257	29225257	A	G	ENSMUST00000085818.5	1	ENSMUSG00000046410	missense	Y/H	241	Kcnk6	ENSMUST00000085818.5:c.721T>C	ENSMUSP00000082975.4:p.Tyr241His	H-2-Kb	9	8	4	VTAHLFLGL	VTAYLFLGL	NetMHCpan	60.3	48	0.796	73	0.164	154.464	101.378	0.656	66.89	127.33	48	60.3	135.865753	181.5975563	170.7064772	203.3527266	M6_p20	1.771428571	1.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	73	0	0	NA	7qB1	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.939259119	sgMsh2	cell line
chr7	80082188	80082188	A	T	ENSMUST00000164056.8	1	ENSMUSG00000048897	missense	H/L	371	Zfp710	ENSMUST00000164056.8:c.1112A>T	ENSMUSP00000132361.2:p.His371Leu	H-2-Kb	9	6	6	SHLKRLMLL	SHLKRHMLL	NetMHC	135.38	88.46	0.653	31	0.226	224.071	227.686	1.016	88.46	135.38	187.3	204.3	272.9669078	243.8428356	268.0711022	278.7725451	M6_p20	1.242857143	1.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.303	31	0	0	NA	7qD2	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr7	29225257	29225257	A	G	ENSMUST00000085818.5	1	ENSMUSG00000046410	missense	Y/H	241	Kcnk6	ENSMUST00000085818.5:c.721T>C	ENSMUSP00000082975.4:p.Tyr241His	H-2-Kb	9	9	3	TAHLFLGLV	TAYLFLGLV	NetMHC	140.53	16.05	0.114	73	0.164	228.011	38.334	0.168	16.05	140.53	34	213.3	42.66875784	242.7224795	51.90987702	282.000579	M6_p20	2.114285714	2.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	73	0	0	NA	7qB1	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.939259119	sgMsh2	cell line
chr7	26611187	26611187	T	C	ENSMUST00000228367.1	NA	ENSMUSG00000091924	missense	M/V	298	Vmn1r185	ENSMUST00000228367.1:c.892A>G	ENSMUSP00000154816.1:p.Met298Val	H-2-Kb	9	6	6	RSYSLVSRF	RSYSLMSRF	NetMHCpan	141.6	108.4	0.766	207	0.024	189.696	134.173	0.707	111.27	145.45	108.4	141.6	157.0760603	233.9429705	198.2668013	302.8656361	M6_p20	0.485714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.031	207	0	0	NA	7qA3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.145585163	sgMsh2	cell line
chr7	85222219	85222219	T	C	ENSMUST00000061074.9	5	ENSMUSG00000096861	missense	S/G	619	Vmn2r68	ENSMUST00000061074.9:c.1855A>G	ENSMUSP00000129411.1:p.Ser619Gly	H-2-Kb	9	10	2	LGYVLLISL	LSYVLLISL	NetMHC	167.43	52.29	0.312	290	0.134	225.284	86.926	0.386	52.29	167.43	102	217.7	81.11664876	232.8681001	92.73635031	245.6122367	M6_p20	2.571428571	2.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.15	290	0	0	NA	7qD3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.704444339	sgMsh2	cell line
chr7	41837597	41837597	T	C	ENSMUST00000171671.2	5	ENSMUSG00000090383	missense	T/A	625	Vmn2r58	ENSMUST00000171671.2:c.1873A>G	ENSMUSP00000126966.1:p.Thr625Ala	H-2-Kb	9	10	2	RALSYILLL	RTLSYILLL	NetMHCpan	108.3	113.1	1.044	442	0.048	251.553	336.393	1.337	272.74	212.63	113.1	108.3	400.0460623	290.4758291	502.6318444	389.2691619	M6_p20	2.514285714	2.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.051	442	0	0	NA	7qB3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.239511075	sgMsh2	cell line
chr7	66784798	66784798	T	C	ENSMUST00000066475.10	1	ENSMUSG00000030510	missense	W/R	216	Cers3	ENSMUST00000066475.10:c.646T>C	ENSMUSP00000069238.8:p.Trp216Arg	H-2-Kb	9	8	4	SQYRYYILE	SQYWYYILE	SMM	92.493	70.325	0.76	546	0.092	160.502	195.895	1.221	314.3	217.43	396.3	364.7	70.32504197	92.49324152	77.49077422	103.5738214	M6_p20	-0.514285714	-0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.096	546	0	0	NA	7qC	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.450844377	sgMsh2	cell line
chr7	44860083	44860083	A	T	ENSMUST00000003044.13	1	ENSMUSG00000002963	missense	I/F	214	Pnkp	ENSMUST00000003044.13:c.640A>T	ENSMUSP00000003044.7:p.Ile214Phe	H-2-Kb	9	10	2	VFFTNQMGI	VIFTNQMGI	NetMHC	224.67	173.98	0.774	137	0.182	495.62	287.013	0.579	173.98	224.67	171	466.3	400.0460623	524.9404026	441.8247089	598.7561676	M6_p20	0.157142857	0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.173	137	0	0	NA	7qB3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.812459138	sgMsh2	cell line
chr7	45918149	45918149	A	G	ENSMUST00000164119.2	1	ENSMUSG00000040212	missense	Y/H	137	Emp3	ENSMUST00000164119.2:c.409T>C	ENSMUSP00000132519.1:p.Tyr137His	H-2-Kb	9	7	5	GSFGHCFAL	GSFGYCFAL	NetMHCpan	167.9	76.2	0.454	40	0.35	176.796	128.603	0.727	121.61	260.39	76.2	167.9	146.9298381	183.2778578	135.5969747	170.3138632	M6_p20	1.442857143	1.442857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.36	40	0	0	NA	7qB3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	2	1	sgMsh2	cell line
chr7	55979873	55979873	A	G	ENSMUST00000052204.5	1	ENSMUSG00000047037	missense	L/P	164	Nipa1	ENSMUST00000052204.5:c.491T>C	ENSMUSP00000053871.5:p.Leu164Pro	H-2-Kb	9	8	4	IVLPMLLLL	IVLLMLLLL	SMM	204.696	121.649	0.594	68	0.206	235.633	198.63	0.843	238.68	304.54	1026.3	211.1	121.6494081	204.6963035	158.5805793	260.1656766	M6_p20	2.757142857	2.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.172	68	0	0	NA	7qB5	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.807762842	sgMsh2	cell line
chr7	80082188	80082188	A	T	ENSMUST00000164056.8	1	ENSMUSG00000048897	missense	H/L	371	Zfp710	ENSMUST00000164056.8:c.1112A>T	ENSMUSP00000132361.2:p.His371Leu	H-2-Kb	9	5	7	TSHLKRLML	TSHLKRHML	NetMHC	308.14	679.21	2.204	31	0.226	353.74	578.981	1.637	679.21	308.14	1396.6	945.4	478.7513372	370.7746213	450.0388435	336.7053368	M6_p20	0.242857143	0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.303	31	0	0	NA	7qD2	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr7	25307111	25307111	T	C	ENSMUST00000108409.1	2	ENSMUSG00000043843	missense	F/S	48	Tmem145	ENSMUST00000108409.1:c.143T>C	ENSMUSP00000104046.1:p.Phe48Ser	H-2-Kb	9	6	6	VFLTRSCFL	VFLTRFCFL	SMM	262.488	92.068	0.351	169	0.26	329.079	87.828	0.267	80.84	346.09	87.5	440.4	92.06827368	262.4883301	88.15561915	312.0685478	M6_p20	0.985714286	1.042857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.235	169	0	0	NA	7qA3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr7	25761460	25761460	T	C	ENSMUST00000002677.10	1	ENSMUSG00000002602	missense	K/R	708	Axl	ENSMUST00000002677.10:c.2123A>G	ENSMUSP00000002677.4:p.Lys708Arg	H-2-Kb	9	7	5	KMPVRWIAI	KMPVKWIAI	NetMHC	351.78	378.59	1.076	147	0.088	387.454	595.076	1.536	378.59	351.78	864.2	468.7	539.6472894	360.6699835	650.5040428	414.2380608	M6_p20	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.099	147	0	0	NA	7qA3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.464933264	sgMsh2	cell line
chr7	44905812	44905812	A	G	ENSMUST00000166972.8	1	ENSMUSG00000060279	missense	V/A	443	Ap2a1	ENSMUST00000166972.8:c.1328T>C	ENSMUSP00000127842.1:p.Val443Ala	H-2-Kb	9	5	7	VDYSWYADT	VDYSWYVDT	SMMPMBEC	136.852	185.46	1.355	214	0.112	430.402	1354.693	3.148	2462.72	689.76	3036.3	1824.5	246.6664026	171.044849	185.4598909	136.851638	M6_p20	-0.957142857	-0.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.127	214	0	0	NA	7qB3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.59642954	sgMsh2	cell line
chr7	106886682	106886682	A	G	ENSMUST00000213918.1	5	ENSMUSG00000109354	missense	L/P	45	Olfr706	ENSMUST00000213918.1:c.134T>C	ENSMUSP00000150075.1:p.Leu45Pro	H-2-Db	9	4	8	ALISNGLPL	ALISNGLLL	NetMHC	33.8	360.48	10.665	436	0.17	70.033	297.93	4.254	360.48	33.8	314.3	56	270.7821299	84.06592577	281.5593799	84.83401077	M6_p20	0.828571429	1.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.176	436	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.826548024	sgMsh2	cell line
chr7	112894450	112894450	T	A	ENSMUST00000059768.16	1	ENSMUSG00000055320	missense	F/I	395	Tead1	ENSMUST00000059768.16:c.1183T>A	ENSMUSP00000060671.9:p.Phe395Ile	H-2-Db	9	6	6	SVLENITIL	SVLENFTIL	NetMHCpan	36.9	25.6	0.694	158	0.146	88.888	86.275	0.971	63.25	52.86	25.6	36.9	109.2999592	124.9165554	142.7479894	157.6050032	M6_p20	1.271428571	1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.147	158	0	0	NA	7qF1	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.690355452	sgMsh2	cell line
chr7	108565457	108565457	A	G	ENSMUST00000075595.2	NA	ENSMUSG00000060105	missense	F/L	113	Olfr504	ENSMUST00000075595.2:c.337T>C	ENSMUSP00000075025.1:p.Phe113Leu	H-2-Db	9	6	6	YAIHCLVSM	YAIHCFVSM	NetMHC	93.71	107.99	1.152	379	0.198	321.339	304.71	0.948	107.99	93.71	252.5	306.5	430.1500721	391.3992598	356.9192732	336.1785503	M6_p20	1.842857143	1.842857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.204	379	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.958044301	sgMsh2	cell line
chr7	105337497	105337497	A	G	ENSMUST00000213290.1	5	ENSMUSG00000043948	missense	I/T	73	Olfr691	ENSMUST00000213290.1:c.218T>C	ENSMUSP00000150297.1:p.Ile73Thr	H-2-Db	9	4	8	SMLAITDTL	SMLAITDIL	NetMHCpan	179	464.6	2.596	201	0.214	364.26	1326.091	3.641	1789.51	388.41	464.6	179	1136.632317	340.1104688	1515.549062	485.9258466	M6_p20	1.285714286	1.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.222	201	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr7	102804243	102804243	T	C	ENSMUST00000061096.6	NA	ENSMUSG00000048469	missense	I/T	255	Olfr564	ENSMUST00000061096.6:c.764T>C	ENSMUSP00000129376.1:p.Ile255Thr	H-2-Kb	8	6	6	VAVFYTPL	VAVFYIPL	NetMHCpan	5.1	7.7	1.51	490	0.171	10.935	14.209	1.299	11.25	6.32	7.7	5.1	17.16880231	15.55034397	18.48161845	16.09681675	M6_p20	1.285714286	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.176	490	0	0	NA	7qE3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.826548024	sgMsh2	cell line
chr7	86695231	86695231	TA	T	ENSMUST00000080165.4	2	ENSMUSG00000060688	FS	L/X	258	Olfr292	ENSMUST00000080165.4:c.777del	ENSMUSP00000079060.3:p.Lys259AsnfsTer8	H-2-Kb	8	6	7	GAYVYLNL	GAYVYLKP	NetMHC	6.75	12486.07	1849.788	170	0.176	12.305	3750.636	304.809	12486.07	6.75	5427.6	8.1	2073.671696	21.2686537	1488.469706	16.50973111	M6_p20	1.071428571	1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.163	170	0	0	NA	7qD3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.765496182	sgMsh2	cell line
chr7	108755711	108755711	A	G	ENSMUST00000214670.1	5	ENSMUSG00000051200	missense	N/S	285	Olfr513	ENSMUST00000214670.1:c.854A>G	ENSMUSP00000149440.1:p.Asn285Ser	H-2-Kb	8	6	6	VIPMLSPL	VIPMLNPL	NetMHC	16.15	38.51	2.385	123	0.13	69.634	131.561	1.889	38.51	16.15	125.8	54.4	137.3219621	84.86722465	152.3140619	88.25513833	M6_p20	1.428571429	1.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.137	123	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.643392496	sgMsh2	cell line
chr7	108066532	108066532	T	C	ENSMUST00000071658.2	NA	ENSMUSG00000063120	missense	M/V	89	Olfr480	ENSMUST00000071658.2:c.265A>G	ENSMUSP00000071583.2:p.Met89Val	H-2-Kb	8	11	1	VYLFLSHL	MYLFLSHL	NetMHCpan	13.1	28.9	2.206	282	0.074	134.327	287.934	2.144	52.58	23.33	28.9	13.1	523.2870654	245.323979	556.8522772	262.8693795	M6_p20	1.271428571	1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.083	282	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.389792534	sgMsh2	cell line
chr7	103597434	103597434	A	G	ENSMUST00000214883.1	5	ENSMUSG00000073945	missense	I/M	39	Olfr618	ENSMUST00000214883.1:c.117A>G	ENSMUSP00000151147.1:p.Ile39Met	H-2-Kb	8	8	4	SMYMVALI	SMYIVALI	NetMHC	27.68	39.74	1.436	335	0.149	127.783	146.838	1.149	39.74	27.68	80.5	50.1	213.1768301	232.6697911	233.7437461	205.466016	M6_p20	2.4	2.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.138	335	0	0	NA	7qE3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.648088792	sgMsh2	cell line
chr7	104636454	104636454	T	C	ENSMUST00000215454.2	5	ENSMUSG00000073923	missense	V/A	260	Olfr657	ENSMUST00000215454.2:c.779T>C	ENSMUSP00000150070.1:p.Val260Ala	H-2-Kb	8	5	7	ILFFYTAV	ILFFYTVV	NetMHCpan	19.7	38.2	1.939	391	0.156	25.054	57.71	2.303	225.91	42.54	38.2	19.7	60.49785825	25.68857419	54.92119775	24.41968177	M6_p20	1.914285714	1.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.162	391	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.760799886	sgMsh2	cell line
chr7	120139766	120139766	T	G	ENSMUST00000033207.5	1	ENSMUSG00000030911	missense	Q/H	199	Zp2	ENSMUST00000033207.5:c.597A>C	ENSMUSP00000033207.4:p.Gln199His	H-2-Kb	8	9	3	IVHGFNLL	IVQGFNLL	NetMHCpan	35.1	96.2	2.741	253	0.182	71.965	111.009	1.543	76.52	44.45	96.2	35.1	125.8171954	109.8348092	145.794117	99.48096742	M6_p20	1.071428571	1.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.183	253	0	0	NA	7qF2	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.859422094	sgMsh2	cell line
chr7	108031681	108031681	A	G	ENSMUST00000210173.2	3	ENSMUSG00000094426	missense	Y/H	221	Olfr478	ENSMUST00000210173.2:c.661T>C	ENSMUSP00000147713.1:p.Tyr221His	H-2-Kb	8	9	3	ISHIYILI	ISYIYILI	NetMHCpan	32.1	7	0.218	657	0.075	78.835	8.59	0.109	4.24	53.98	7	32.1	10.56185011	124.3769779	10.17981768	103.6907462	M6_p20	1.714285714	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.07	657	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.328740692	sgMsh2	cell line
chr7	102927910	102927910	T	A	ENSMUST00000215782.2	5	ENSMUSG00000073963	missense	I/N	94	Olfr572	ENSMUST00000215782.2:c.281T>A	ENSMUSP00000149174.1:p.Ile94Asn	H-2-Kb	8	6	6	FNYKFNTF	FNYKFITF	NetMHCpan	50.8	48.2	0.949	232	0.06	130.321	119.91	0.92	86.45	77.52	48.2	50.8	158.0301673	183.1217795	153.3698525	187.8192059	M6_p20	-1.042857143	-1.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.071	232	0	0	NA	7qE3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.333436987	sgMsh2	cell line
chr7	120799594	120799594	A	C	ENSMUST00000033180.12	5	ENSMUSG00000030889	missense	Q/P	989	Vwa3a	ENSMUST00000033180.12:c.2966A>C	ENSMUSP00000033180.6:p.Gln989Pro	H-2-Kb	8	9	3	AMPWVAHL	AMQWVAHL	NetMHC	100.16	217.79	2.174	102	0.059	312.053	382.273	1.225	217.79	100.16	314	182.8	450.5468939	441.3061706	537.9476318	510.1994663	M6_p20	0.857142857	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.077	102	0	0	NA	7qF2	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.361614761	sgMsh2	cell line
chr7	105555462	105555462	AC	A	ENSMUST00000046983.9	1	ENSMUSG00000037049	FS	P/X	183	Smpd1	ENSMUST00000046983.9:c.551del	ENSMUSP00000042187.8:p.Pro184GlnfsTer72	H-2-Kb	8	47	0	VQIHFAAA	NA	SMMPMBEC	150.918	NA	NA	108	0.315	175.233	NA	NA	NA	165.65	NA	488.7	NA	184.8161845	NA	150.9176382	M6_p20	0.857142857	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.322	108	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	2	1	sgMsh2	cell line
chr7	108171874	108171874	G	A	ENSMUST00000072035.3	NA	ENSMUSG00000096068	missense	P/L	290	Olfr486	ENSMUST00000072035.3:c.869C>T	ENSMUSP00000071918.3:p.Pro290Leu	H-2-Kb	8	5	7	VIPVLNLL	VIPVLNPL	NetMHC	173.73	43.03	0.248	327	0.076	354.134	130.801	0.369	43.03	173.73	146.4	422.9	115.8083836	306.71852	145.794117	401.5503419	M6_p20	2.142857143	2.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.086	327	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.403881421	sgMsh2	cell line
chr7	104939177	104939177	C	T	ENSMUST00000214260.1	5	ENSMUSG00000073916	missense	S/F	217	Olfr669	ENSMUST00000214260.1:c.650C>T	ENSMUSP00000150928.1:p.Ser217Phe	H-2-Kb	8	10	2	IFVSYTMI	ISVSYTMI	NetMHC	191.09	18.91	0.099	508	0.163	211.47	52.961	0.25	18.91	191.09	24.5	205.3	100.6329027	234.8226582	81.42166892	217.6406428	M6_p20	1.514285714	1.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.157	508	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.737318408	sgMsh2	cell line
chr7	108031681	108031681	A	G	ENSMUST00000210173.2	3	ENSMUSG00000094426	missense	Y/H	221	Olfr478	ENSMUST00000210173.2:c.661T>C	ENSMUSP00000147713.1:p.Tyr221His	H-2-Kb	8	7	5	IAISHIYI	IAISYIYI	NetMHCpan	132.8	22.8	0.172	657	0.075	294.664	57.982	0.197	28.92	212.85	22.8	132.8	99.25216755	384.3616066	87.04423244	376.4783444	M6_p20	1.428571429	1.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.07	657	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.328740692	sgMsh2	cell line
chr7	91940074	91940074	T	A	ENSMUST00000107196.9	1	ENSMUSG00000052572	missense	I/N	227	Dlg2	ENSMUST00000107196.9:c.680T>A	ENSMUSP00000102814.2:p.Ile227Asn	H-2-Kb	8	5	7	SIYVTKNI	SIYVTKII	NetMHC	242.01	2437.57	10.072	253	0.091	286.831	2390.198	8.333	2437.57	242.01	1637.8	259.8	2481.646968	364.5356443	2342.825811	313.8629122	M6_p20	0.542857143	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.087	253	0	0	NA	7qE1	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.408577717	sgMsh2	cell line
chr7	105555462	105555462	AC	A	ENSMUST00000046983.9	1	ENSMUSG00000037049	FS	P/X	183	Smpd1	ENSMUST00000046983.9:c.551del	ENSMUSP00000042187.8:p.Pro184GlnfsTer72	H-2-Kb	8	38	0	STWRAQTL	NA	NetMHCpan	140.5	NA	NA	108	0.315	249.349	NA	NA	NA	259.51	NA	140.5	NA	239.1883374	NA	262.2647967	M6_p20	-0.671428571	-0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.322	108	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	2	1	sgMsh2	cell line
chr7	108714066	108714066	C	A	ENSMUST00000074730.3	NA	ENSMUSG00000056946	missense	L/M	238	Olfr512	ENSMUST00000074730.3:c.712C>A	ENSMUSP00000074291.4:p.Leu238Met	H-2-Kb	8	6	6	ILFTIMRM	ILFTILRM	NetMHCpan	74.1	112.6	1.52	460	0.067	290.124	605.685	2.088	729.71	264.21	112.6	74.1	758.1235717	462.1042896	481.6593553	316.0385059	M6_p20	1.385714286	1.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.072	460	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.338133283	sgMsh2	cell line
chr7	103597434	103597434	A	G	ENSMUST00000214883.1	5	ENSMUSG00000073945	missense	I/M	39	Olfr618	ENSMUST00000214883.1:c.117A>G	ENSMUSP00000151147.1:p.Ile39Met	H-2-Kb	8	7	5	CSMYMVAL	CSMYIVAL	NetMHCpan	140	209.7	1.498	335	0.149	375.731	935.687	2.49	699.88	282.93	209.7	140	1461.302072	471.7805149	1171.493815	468.5328006	M6_p20	1.642857143	1.642857143	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.138	335	0	0	NA	7qE3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.648088792	sgMsh2	cell line
chr7	92624080	92624080	A	G	ENSMUST00000118157.7	1	ENSMUSG00000041343	missense	I/T	113	Ankrd42	ENSMUST00000118157.7:c.338T>C	ENSMUSP00000113767.1:p.Ile113Thr	H-2-Kb	8	10	2	LTINGANL	LIINGANL	SMMPMBEC	208.805	217.641	1.042	88	0.284	312.671	267.751	0.856	251.88	341.72	448	484.5	283.6220554	283.6220554	217.6406428	208.8045702	M6_p20	0.285714286	0.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.309	88	0	0	NA	7qE1	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr7	107902860	107902860	T	G	ENSMUST00000216937.2	3	ENSMUSG00000073893	missense	L/V	48	Olfr472	ENSMUST00000216937.2:c.142T>G	ENSMUSP00000150404.2:p.Leu48Val	H-2-Kb	8	11	1	VIRISSQL	LIRISSQL	SMM	217.14	1098.348	5.058	515	0.171	318.27	1856.107	5.832	2507.9	346.98	2954.6	880.8	1098.348092	217.1400833	1204.314735	289.5609548	M6_p20	0.457142857	0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.176	515	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.826548024	sgMsh2	cell line
chr7	104553663	104553663	T	C	ENSMUST00000216904.1	5	ENSMUSG00000073928	missense	I/T	248	Olfr651	ENSMUST00000216904.1:c.743T>C	ENSMUSP00000150776.1:p.Ile248Thr	H-2-Kb	8	10	2	VTLMFYTP	VILMFYTP	SMM	203.582	203.582	1	285	0.196	249.877	303.105	1.213	377.26	372.21	680.5	280.1	203.5822922	203.5822922	228.9496585	219.6544469	M6_p20	0.6	1.428571429	FALSE	FALSE	TRUE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.204	285	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.958044301	sgMsh2	cell line
chr7	102640431	102640431	T	C	ENSMUST00000214841.2	5	ENSMUSG00000073971	missense	Y/H	62	Olfr554	ENSMUST00000214841.2:c.184T>C	ENSMUSP00000150312.1:p.Tyr62His	H-2-Kb	8	10	2	MHFFLCML	MYFFLCML	SMM	148.505	239.188	1.611	200	0.135	175.216	257.858	1.472	379.78	401.79	221.3	160	239.1883374	148.504632	276.528565	190.4320313	M6_p20	2.057142857	2.057142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.15	200	0	0	NA	7qE3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.704444339	sgMsh2	cell line
chr7	100503182	100503182	A	G	ENSMUST00000207405.1	1	ENSMUSG00000030708	missense	M/T	309	Dnajb13	ENSMUST00000207405.1:c.926T>C	ENSMUSP00000147019.1:p.Met309Thr	H-2-Kb	8	13	2	QTLRQALL	QMLRQALL	SMM	286.906	520.883	1.816	65	0.169	461.754	706.441	1.53	350.19	416.82	892	1408.6	520.8827797	286.906244	911.4650073	506.6872779	M6_p20	0.642857143	0.642857143	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.178	65	0	0	NA	7qE2	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.835940616	sgMsh2	cell line
chr7	108066532	108066532	T	C	ENSMUST00000071658.2	NA	ENSMUSG00000063120	missense	M/V	89	Olfr480	ENSMUST00000071658.2:c.265A>G	ENSMUSP00000071583.2:p.Met89Val	H-2-Kb	8	8	4	HTPVYLFL	HTPMYLFL	NetMHCpan	245.7	219.6	0.894	282	0.074	262.002	292.515	1.116	407.26	463.94	219.6	245.7	316.0385059	266.5262568	268.9923939	257.4779247	M6_p20	1.571428571	1.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.083	282	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.389792534	sgMsh2	cell line
chr7	100029349	100029349	A	C	ENSMUST00000107084.7	1	ENSMUSG00000030732	missense	K/T	376	Chrdl2	ENSMUST00000107084.7:c.1127A>C	ENSMUSP00000102699.1:p.Lys376Thr	H-2-Kb	8	10	2	VTGIYHLV	VKGIYHLV	SMMPMBEC	259.263	1488.47	5.741	75	0.227	418.532	4047.185	9.67	7154.5	645.35	6605.9	574.8	1437.937467	262.2647967	1488.469706	259.2626764	M6_p20	0.985714286	0.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.235	75	0	0	NA	7qE2	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr7	104635816	104635816	CA	C	ENSMUST00000215454.2	5	ENSMUSG00000073923	FS	T/X	47	Olfr657	ENSMUST00000215454.2:c.143del	ENSMUSP00000150070.1:p.Asn48ThrfsTer14	H-2-Kb	8	13	0	CSFSSSSV	NA	NetMHCpan	347.8	NA	NA	367	0.172	456.107	NA	NA	NA	759.7	NA	347.8	NA	373.0267702	NA	539.1877292	M6_p20	0.428571429	0.428571429	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.161	367	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.756103591	sgMsh2	cell line
chr7	106677976	106677976	T	C	ENSMUST00000215541.1	5	ENSMUSG00000051680	missense	K/R	170	Olfr693	ENSMUST00000215541.1:c.509A>G	ENSMUSP00000150203.1:p.Lys170Arg	H-2-Kb	8	5	7	MQYPFCRS	MQYPFCKS	SMM	110.342	315.312	2.858	264	0.178	395.159	833.205	2.109	3782.69	1164.02	1129.7	594.1	315.3116375	110.3417837	536.7103866	196.218522	M6_p20	-0.914285714	-0.528571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.185	264	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.868814685	sgMsh2	cell line
chr7	102804243	102804243	T	C	ENSMUST00000061096.6	NA	ENSMUSG00000048469	missense	I/T	255	Olfr564	ENSMUST00000061096.6:c.764T>C	ENSMUSP00000129376.1:p.Ile255Thr	H-2-Kb	9	5	7	AVAVFYTPL	AVAVFYIPL	NetMHC	9.55	22.58	2.364	490	0.171	25.078	36.449	1.453	22.58	9.55	31.2	10.7	41.69749833	39.45572246	59.19022625	53.85797247	M6_p20	1.285714286	1.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.176	490	0	0	NA	7qE3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.826548024	sgMsh2	cell line
chr7	104553663	104553663	T	C	ENSMUST00000216904.1	5	ENSMUSG00000073928	missense	I/T	248	Olfr651	ENSMUST00000216904.1:c.743T>C	ENSMUSP00000150776.1:p.Ile248Thr	H-2-Kb	9	10	2	VTLMFYTPA	VILMFYTPA	NetMHC	14.99	17.47	1.165	285	0.196	56.633	69.028	1.219	17.47	14.99	57.1	24.5	89.55915762	106.1964502	80.95617863	88.76668471	M6_p20	0.957142857	1.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.204	285	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.958044301	sgMsh2	cell line
chr7	108066532	108066532	T	C	ENSMUST00000071658.2	NA	ENSMUSG00000063120	missense	M/V	89	Olfr480	ENSMUST00000071658.2:c.265A>G	ENSMUSP00000071583.2:p.Met89Val	H-2-Kb	9	10	2	PVYLFLSHL	PMYLFLSHL	SMM	27.74	12.797	0.461	282	0.074	31.825	25.891	0.814	28.38	30.85	39.4	32.8	12.79705392	27.74022632	23.40183969	47.56089297	M6_p20	1.271428571	1.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.083	282	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.389792534	sgMsh2	cell line
chr7	103383210	103383210	C	A	ENSMUST00000218246.1	5	ENSMUSG00000059874	missense	R/M	264	Olfr603	ENSMUST00000218246.1:c.791G>T	ENSMUSP00000151321.1:p.Arg264Met	H-2-Kb	9	3	9	AFFSFMTHM	AFFSFMTHR	NetMHC	35.33	1084.45	30.695	212	0.127	58.802	1265.361	21.519	1084.45	35.33	5417.8	36.3	914.3448014	81.30364195	1446.272072	107.2136299	M6_p20	0.671428571	1.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.148	212	0	0	NA	7qE3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.695051748	sgMsh2	cell line
chr7	120799594	120799594	A	C	ENSMUST00000033180.12	5	ENSMUSG00000030889	missense	Q/P	989	Vwa3a	ENSMUST00000033180.12:c.2966A>C	ENSMUSP00000033180.6:p.Gln989Pro	H-2-Kb	9	8	4	KAMPWVAHL	KAMQWVAHL	NetMHCpan	42	40.6	0.967	102	0.059	257.499	215.383	0.836	37.01	48.07	40.6	42	441.6823044	473.271116	390.1665199	466.9280884	M6_p20	0.857142857	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.077	102	0	0	NA	7qF2	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.361614761	sgMsh2	cell line
chr7	104636454	104636454	T	C	ENSMUST00000215454.2	5	ENSMUSG00000073923	missense	V/A	260	Olfr657	ENSMUST00000215454.2:c.779T>C	ENSMUSP00000150070.1:p.Val260Ala	H-2-Kb	9	4	8	LILFFYTAV	LILFFYTVV	NetMHC	50.71	214.25	4.225	391	0.156	95.984	175.371	1.827	214.25	50.71	256.3	101.2	136.4928808	96.8523137	117.8284053	95.11521633	M6_p20	1.914285714	2.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.162	391	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.760799886	sgMsh2	cell line
chr7	102804243	102804243	T	C	ENSMUST00000061096.6	NA	ENSMUSG00000048469	missense	I/T	255	Olfr564	ENSMUST00000061096.6:c.764T>C	ENSMUSP00000129376.1:p.Ile255Thr	H-2-Kb	9	8	4	VFYTPLISL	VFYIPLISL	NetMHC	89.79	84.86	0.945	490	0.171	100.968	103.132	1.021	84.86	89.79	198.8	102.6	85.13536455	99.3367621	121.129521	141.6609011	M6_p20	1.1	1.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.176	490	0	0	NA	7qE3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.826548024	sgMsh2	cell line
chr7	86695231	86695231	TA	T	ENSMUST00000080165.4	2	ENSMUSG00000060688	FS	L/X	258	Olfr292	ENSMUST00000080165.4:c.777del	ENSMUSP00000079060.3:p.Lys259AsnfsTer8	H-2-Kb	9	5	8	SGAYVYLNL	SGAYVYLKP	NetMHCpan	70.7	14371.7	203.277	170	0.176	383.983	10270.6	26.748	20568.75	128.07	14371.7	70.7	4467.967444	639.8968908	6169.500447	706.7242604	M6_p20	1.071428571	1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.163	170	0	0	NA	7qD3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.765496182	sgMsh2	cell line
chr7	104939177	104939177	C	T	ENSMUST00000214260.1	5	ENSMUSG00000073916	missense	S/F	217	Olfr669	ENSMUST00000214260.1:c.650C>T	ENSMUSP00000150928.1:p.Ser217Phe	H-2-Kb	9	9	3	CIFVSYTMI	CISVSYTMI	NetMHC	149.05	2150.19	14.426	508	0.163	170.35	2223.83	13.054	2150.19	149.05	3023.9	157	1718.343562	183.7003569	2297.470798	265.0025177	M6_p20	1.514285714	1.6	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.157	508	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.737318408	sgMsh2	cell line
chr7	108755711	108755711	A	G	ENSMUST00000214670.1	5	ENSMUSG00000051200	missense	N/S	285	Olfr513	ENSMUST00000214670.1:c.854A>G	ENSMUSP00000149440.1:p.Asn285Ser	H-2-Kb	9	5	7	LVIPMLSPL	LVIPMLNPL	NetMHCpan	136.3	272.5	1.999	123	0.13	191.537	274.23	1.432	275.96	153.93	272.5	136.3	262.4883301	229.1447967	329.0409876	273.0549161	M6_p20	1.428571429	2.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.137	123	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.643392496	sgMsh2	cell line
chr7	108031681	108031681	A	G	ENSMUST00000210173.2	3	ENSMUSG00000094426	missense	Y/H	221	Olfr478	ENSMUST00000210173.2:c.661T>C	ENSMUSP00000147713.1:p.Tyr221His	H-2-Kb	9	7	5	IAISHIYIL	IAISYIYIL	NetMHCpan	89.6	39.6	0.442	657	0.075	172.099	112.772	0.655	92.77	178.58	39.6	89.6	132.7730709	165.6189397	178.3405083	224.0010221	M6_p20	1.714285714	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.07	657	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.328740692	sgMsh2	cell line
chr7	102804243	102804243	T	C	ENSMUST00000061096.6	NA	ENSMUSG00000048469	missense	I/T	255	Olfr564	ENSMUST00000061096.6:c.764T>C	ENSMUSP00000129376.1:p.Ile255Thr	H-2-Kb	9	6	6	VAVFYTPLI	VAVFYIPLI	NetMHCpan	95.1	97.3	1.023	490	0.171	190.906	181.259	0.949	176.63	183.61	97.3	95.1	196.3857628	198.2028979	185.8874201	201.9528563	M6_p20	1.671428571	1.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.176	490	0	0	NA	7qE3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.826548024	sgMsh2	cell line
chr7	108466294	108466294	C	A	ENSMUST00000217616.2	NA	ENSMUSG00000096679	missense	H/Q	323	Olfr498	ENSMUST00000217616.2:c.969C>A	ENSMUSP00000150971.1:p.His323Gln	H-2-Kb	9	13	2	TQYNHNYPV	THYNHNYPV	NetMHCpan	244.2	296.1	1.213	405	0.185	335.309	309.144	0.922	322.41	309	296.1	244.2	322.1884741	416.0159675	273.0549161	361.6179668	M6_p20	-1.457142857	-1.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.187	405	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.878207276	sgMsh2	cell line
chr7	104939177	104939177	C	T	ENSMUST00000214260.1	5	ENSMUSG00000073916	missense	S/F	217	Olfr669	ENSMUST00000214260.1:c.650C>T	ENSMUSP00000150928.1:p.Ser217Phe	H-2-Kb	9	10	2	IFVSYTMIL	ISVSYTMIL	NetMHCpan	247.3	36.2	0.146	508	0.163	301.603	100.437	0.333	44.88	314.73	36.2	247.3	155.9947563	288.4762076	197.3558481	396.5062159	M6_p20	1.657142857	1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.157	508	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.737318408	sgMsh2	cell line
chr7	104636454	104636454	T	C	ENSMUST00000215454.2	5	ENSMUSG00000073923	missense	V/A	260	Olfr657	ENSMUST00000215454.2:c.779T>C	ENSMUSP00000150070.1:p.Val260Ala	H-2-Kb	9	5	7	ILFFYTAVV	ILFFYTVVV	NetMHCpan	79.8	372.6	4.669	391	0.156	297.047	469.491	1.581	1148.93	335.72	372.6	79.8	566.3827268	392.7443988	350.1466697	258.3747087	M6_p20	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.162	391	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.760799886	sgMsh2	cell line
chr7	108317521	108317521	T	C	ENSMUST00000214605.1	2	ENSMUSG00000094612	missense	V/A	209	Olfr491	ENSMUST00000214605.1:c.626T>C	ENSMUSP00000150694.1:p.Val209Ala	H-2-Kb	9	10	2	VATVFVISV	VVTVFVISV	NetMHC	342.27	467.62	1.366	678	0.066	395.11	553.012	1.4	467.62	342.27	735.6	356.6	487.6519891	433.6206938	618.3722614	534.872168	M6_p20	2.628571429	3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.072	678	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.338133283	sgMsh2	cell line
chr7	127905762	127905762	T	C	ENSMUST00000071056.13	1	ENSMUSG00000030802	missense	I/T	130	Bckdk	ENSMUST00000071056.13:c.389T>C	ENSMUSP00000070345.7:p.Ile130Thr	H-2-Kb	8	10	2	YTRAFQKL	YIRAFQKL	NetMHCpan	121.7	137.9	1.133	216	0.065	139.122	142.352	1.023	95.73	131.44	137.9	121.7	146.8047136	146.8047136	188.2521739	180.6092545	M6_p20	-0.6	-0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.076	216	0	0	NA	7qF3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.356918465	sgMsh2	cell line
chr7	130626370	130626370	C	T	ENSMUST00000084513.11	5	ENSMUSG00000030852	missense	A/V	1595	Tacc2	ENSMUST00000084513.11:c.4784C>T	ENSMUSP00000081561.4:p.Ala1595Val	H-2-Kb	8	11	1	VAVSTANM	AAVSTANM	NetMHC	158.19	1148.94	7.263	142	0.141	342.658	1254.349	3.661	1148.94	158.19	1200.3	303.6	1580.301673	419.5077612	1308.398387	381.7156799	M6_p20	0.671428571	1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.158	142	0	0	NA	7qF3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.742014704	sgMsh2	cell line
chr7	143764865	143764865	A	G	ENSMUST00000058092.7	1	ENSMUSG00000050276	missense	V/A	170	Mrgprg	ENSMUST00000058092.7:c.509T>C	ENSMUSP00000060411.6:p.Val170Ala	H-2-Kb	8	5	7	SVTWLAAL	SVTWLAVL	NetMHC	159.87	1117.42	6.99	163	0.172	214.27	627.213	2.927	1117.42	159.87	483.5	188.8	564.598864	239.7397234	689.8267002	306.71852	M6_p20	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.176	163	0	0	NA	7qF5	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.826548024	sgMsh2	cell line
chr8	66704576	66704576	T	G	ENSMUST00000039303.6	1	ENSMUSG00000036437	missense	V/G	216	Npy1r	ENSMUST00000039303.6:c.647T>G	ENSMUSP00000045530.5:p.Val216Gly	H-2-Kb	8	11	1	GLQYFGPL	VLQYFGPL	NetMHC	232.2	21.27	0.092	165	0.079	412.807	40.168	0.097	21.27	232.2	29.9	298.7	51.72970479	827.4466462	50.43592613	526.9143181	M6_p20	0.514285714	0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.096	165	0	0	NA	8qB3.1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.450844377	sgMsh2	cell line
chr7	139511443	139511443	TA	T	ENSMUST00000026550.13	1	ENSMUSG00000025477	FS	L/X	114	Inpp5a	ENSMUST00000026550.13:c.347del	ENSMUSP00000026550.7:p.Asn116ThrfsTer66	H-2-Kb	8	47	0	SSHRTTFL	NA	SMMPMBEC	279.731	NA	NA	99	0.192	346.663	NA	NA	NA	383.77	NA	829.5	NA	309.5565516	NA	279.7306149	M6_p20	-0.471428571	-0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.194	99	0	0	NA	7qF4	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.911081345	sgMsh2	cell line
chr7	133721362	133721362	T	C	ENSMUST00000033290.11	1	ENSMUSG00000030986	missense	N/D	708	Dhx32	ENSMUST00000033290.11:c.2122A>G	ENSMUSP00000033290.5:p.Asn708Asp	H-2-Kb	8	5	7	PQYYFSDL	PQYYFSNL	SMM	381.716	59.257	0.155	139	0.151	426.377	54.129	0.127	23.37	432.28	49	468.5	59.2570463	381.7156799	70.10354824	420.4748265	M6_p20	-0.542857143	-0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.162	139	0	0	NA	7qF3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.760799886	sgMsh2	cell line
chr7	144595572	144595572	T	C	ENSMUST00000121758.7	1	ENSMUSG00000031075	missense	M/V	851	Ano1	ENSMUST00000121758.7:c.2551A>G	ENSMUSP00000112616.2:p.Met851Val	H-2-Kb	8	6	6	LVYLYVYS	LVYLYMYS	SMM	111.877	86.445	0.773	206	0.068	452.351	193.098	0.427	274.32	779.75	666	956.6	86.44502416	111.8767908	111.8767908	124.9510759	M6_p20	1.071428571	1.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.085	206	0	0	NA	7qF5	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.399185125	sgMsh2	cell line
chr8	53587238	53587238	A	T	ENSMUST00000047768.10	1	ENSMUSG00000039396	missense	N/K	576	Neil3	ENSMUST00000047768.10:c.1728T>A	ENSMUSP00000041909.4:p.Asn576Lys	H-2-Kb	8	10	2	KKFFVCPL	KNFFVCPL	SMM	299.047	60.777	0.203	86	0.14	453.597	69.627	0.153	97.25	1737.39	18	546	60.77710368	299.0473787	78.47656766	361.1935614	M6_p20	1.514285714	1.514285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.16	86	0	0	NA	8qB1.3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.751407295	sgMsh2	cell line
chr8	66704576	66704576	T	G	ENSMUST00000039303.6	1	ENSMUSG00000036437	missense	V/G	216	Npy1r	ENSMUST00000039303.6:c.647T>G	ENSMUSP00000045530.5:p.Val216Gly	H-2-Kb	9	10	2	LGLQYFGPL	LVLQYFGPL	NetMHC	9.41	10.49	1.115	165	0.079	60.128	37.163	0.618	10.49	9.41	15	12.3	74.83590241	157.438158	59.32667381	107.9567993	M6_p20	0.514285714	0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.096	165	0	0	NA	8qB3.1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.450844377	sgMsh2	cell line
chr7	132982489	132982489	C	T	ENSMUST00000106157.7	5	ENSMUSG00000030967	missense	T/I	556	Zranb1	ENSMUST00000106157.7:c.1667C>T	ENSMUSP00000101763.1:p.Thr556Ile	H-2-Kb	9	8	4	LGYIRFQGV	LGYTRFQGV	NetMHC	12.99	16.14	1.242	75	0.093	57.917	67.015	1.157	16.14	12.99	27.8	25	125.6348137	107.67379	106.2306894	90.83432641	M6_p20	0.257142857	0.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.098	75	0	0	NA	7qF3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.460236968	sgMsh2	cell line
chr8	44953091	44953091	T	G	ENSMUST00000191428.6	5	ENSMUSG00000070047	missense	S/A	960	Fat1	ENSMUST00000191428.6:c.2878T>G	ENSMUSP00000140596.1:p.Ser960Ala	H-2-Kb	9	11	1	ASQVRYSLL	SSQVRYSLL	NetMHC	15.12	8.94	0.591	232	0.069	71.23	43.741	0.614	8.94	15.12	42.7	73.1	44.78267173	69.36014622	58.10988286	79.47856184	M6_p20	0.242857143	0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.079	232	0	0	NA	8qB1.1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.371007352	sgMsh2	cell line
chr7	143764865	143764865	A	G	ENSMUST00000058092.7	1	ENSMUSG00000050276	missense	V/A	170	Mrgprg	ENSMUST00000058092.7:c.509T>C	ENSMUSP00000060411.6:p.Val170Ala	H-2-Kb	9	4	8	TSVTWLAAL	TSVTWLAVL	NetMHC	23.2	97.58	4.206	163	0.172	112.97	169.914	1.504	97.58	23.2	118.9	47.6	317.0370367	224.9624328	220.9276129	178.3405083	M6_p20	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.176	163	0	0	NA	7qF5	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.826548024	sgMsh2	cell line
chr8	64968763	64968763	T	A	ENSMUST00000026595.12	1	ENSMUSG00000025521	missense	Y/N	244	Tmem192	ENSMUST00000026595.12:c.730T>A	ENSMUSP00000026595.5:p.Tyr244Asn	H-2-Kb	9	10	2	VNLKRHNAL	VYLKRHNAL	NetMHC	34.04	134.06	3.938	196	0.107	64.478	127.715	1.981	134.06	34.04	385.2	63	121.3696222	69.04146529	115.1463034	65.95534555	M6_p20	-0.814285714	-0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.125	196	0	0	NA	8qB3.1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.587036949	sgMsh2	cell line
chr7	141067584	141067584	A	C	ENSMUST00000048002.6	1	ENSMUSG00000055629	missense	K/T	388	B4galnt4	ENSMUST00000048002.6:c.1163A>C	ENSMUSP00000039758.5:p.Lys388Thr	H-2-Kb	9	11	1	TCFYRESPL	KCFYRESPL	SMMPMBEC	72.485	128.012	1.766	255	0.063	143.566	204.651	1.425	242.15	176.95	364.5	291.9	167.1513929	110.1818348	128.0117987	72.4853099	M6_p20	-0.728571429	-0.728571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.067	255	0	0	NA	7qF5	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.314651805	sgMsh2	cell line
chr8	64968767	64968767	T	C	ENSMUST00000026595.12	1	ENSMUSG00000025521	missense	L/P	245	Tmem192	ENSMUST00000026595.12:c.734T>C	ENSMUSP00000026595.5:p.Leu245Pro	H-2-Kb	9	9	3	VYPKRHNAL	VYLKRHNAL	SMM	208.022	121.37	0.583	192	0.109	252.033	127.715	0.507	134.06	286.67	385.2	1208.2	121.3696222	208.0223508	115.1463034	217.3952246	M6_p20	-1.585714286	-1.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.127	192	0	0	NA	8qB3.1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.59642954	sgMsh2	cell line
chr8	111688682	111688682	T	G	ENSMUST00000034435.6	1	ENSMUSG00000031957	missense	D/A	120	Ctrb1	ENSMUST00000034435.6:c.359A>C	ENSMUSP00000034435.5:p.Asp120Ala	H-2-Db	9	6	6	FTVRNAITL	FTVRNDITL	NetMHC	11.76	23.98	2.039	91	0.088	69.176	86.239	1.247	23.98	11.76	37.7	23.9	134.778308	114.4511076	138.2197172	117.9152565	M6_p20	0.8	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.1	91	0	0	NA	8qE1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.469629559	sgMsh2	cell line
chr8	109551631	109551631	C	T	ENSMUST00000042601.8	1	ENSMUSG00000037993	missense	D/N	1138	Dhx38	ENSMUST00000042601.8:c.3412G>A	ENSMUSP00000047865.7:p.Asp1138Asn	H-2-Db	9	7	5	VTAVNGEWL	VTAVDGEWL	NetMHC	127.35	8821.39	69.269	211	0.071	384.136	9938.338	25.872	8821.39	127.35	6722.3	173.2	12723.89276	660.1156057	11055.28645	595.0726634	M6_p20	0.214285714	0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.077	211	0	0	NA	8qD3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.361614761	sgMsh2	cell line
chr8	107052821	107052821	A	T	ENSMUST00000095517.11	1	ENSMUSG00000031916	missense	F/I	275	Cog8	ENSMUST00000095517.11:c.823T>A	ENSMUSP00000093173.5:p.Phe275Ile	H-2-Db	10	2	10	TAIPNDDPYI	TAIPNDDPYF	NetMHC	26.6	504.75	18.976	241	0.12	154.582	530.116	3.429	504.75	26.6	349.9	37.1	791.1339102	320.0737072	555.4820122	272.0633241	M6_p20	-1.5	-0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.131	241	0	0	NA	8qD3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.615214723	sgMsh2	cell line
chr8	88308681	88308681	T	G	ENSMUST00000171456.8	1	ENSMUSG00000031659	missense	L/R	71	Adcy7	ENSMUST00000171456.8:c.212T>G	ENSMUSP00000132528.1:p.Leu71Arg	H-2-Kb	8	8	4	TAFRMLTL	TAFLMLTL	NetMHCpan	29.4	51.9	1.765	202	0.158	80.349	113.425	1.412	108.07	64.15	51.9	29.4	118.7790917	97.44061133	118.7790917	96.54727043	M6_p20	1.271428571	1.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.173	202	0	0	NA	8qC3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.812459138	sgMsh2	cell line
chr8	111504457	111504457	A	G	ENSMUST00000034437.7	1	ENSMUSG00000031959	missense	Y/H	40	Wdr59	ENSMUST00000034437.7:c.118T>C	ENSMUSP00000034437.7:p.Tyr40His	H-2-Kb	8	5	7	SGRRFLHI	SGRRFLYI	NetMHC	86.4	125.88	1.457	245	0.163	194.02	184.068	0.949	125.88	86.4	157.4	170.4	210.7366151	220.6683258	223.738128	217.6406428	M6_p20	-0.214285714	-0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.173	245	0	0	NA	8qE1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.812459138	sgMsh2	cell line
chr8	91096777	91096777	A	C	ENSMUST00000034091.7	1	ENSMUSG00000031666	missense	K/N	487	Rbl2	ENSMUST00000034091.7:c.1461A>C	ENSMUSP00000034091.7:p.Lys487Asn	H-2-Kb	8	11	1	NHFRFAEM	KHFRFAEM	NetMHC	86.94	15.02	0.173	152	0.184	143.663	41.161	0.287	15.02	86.94	27.4	128.2	55.42937734	166.241711	54.92119775	159.1255801	M6_p20	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	152	0	0	NA	8qC4	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.939259119	sgMsh2	cell line
chr8	91087019	91087019	A	T	ENSMUST00000034091.7	1	ENSMUSG00000031666	missense	L/F	340	Rbl2	ENSMUST00000034091.7:c.1020A>T	ENSMUSP00000034091.7:p.Leu340Phe	H-2-Kb	8	9	3	YVFAAGNL	YVLAAGNL	NetMHCpan	70.5	600.1	8.512	205	0.18	98.87	545.923	5.522	778.93	93.33	600.1	70.5	436.2545806	104.4094962	491.7450535	113.6946424	M6_p20	1.5	1.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.188	205	0	0	NA	8qC4	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.882903572	sgMsh2	cell line
chr8	83573085	83573085	A	G	ENSMUST00000019382.16	1	ENSMUSG00000031708	missense	V/A	109	Tecr	ENSMUST00000019382.16:c.326T>C	ENSMUSP00000019382.9:p.Val109Ala	H-2-Kb	8	6	6	LFYFRAPF	LFYFRVPF	NetMHCpan	137.5	354.9	2.581	12	0.167	392.858	1090.355	2.775	463.83	190.41	354.9	137.5	2375.417764	821.7505435	1716.880231	595.3056439	M6_p20	0.4	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe	2	0.273	12	0	0	NA	8qC2	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	2	1	sgMsh2	cell line
chr8	88308681	88308681	T	G	ENSMUST00000171456.8	1	ENSMUSG00000031659	missense	L/R	71	Adcy7	ENSMUST00000171456.8:c.212T>G	ENSMUSP00000132528.1:p.Leu71Arg	H-2-Kb	8	6	6	LGTAFRML	LGTAFLML	NetMHC	239.18	645.82	2.7	202	0.158	277.583	372.362	1.341	645.82	239.18	297.2	304.6	360.3628392	270.2340064	384.3616066	284.9311953	M6_p20	0.671428571	0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.173	202	0	0	NA	8qC3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.812459138	sgMsh2	cell line
chr8	106131676	106131676	A	C	ENSMUST00000115979.8	1	ENSMUSG00000084128	missense	F/L	684	Esrp2	ENSMUST00000115979.8:c.2052T>G	ENSMUSP00000111639.2:p.Phe684Leu	H-2-Kb	8	9	3	SVLQAYQL	SVFQAYQL	NetMHCpan	279.8	34.1	0.122	177	0.169	297.844	56.276	0.189	45.45	340.13	34.1	279.8	67.10270075	280.3754606	72.90209351	315.3116375	M6_p20	0.757142857	0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.171	177	0	0	NA	8qD3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.803066546	sgMsh2	cell line
chr8	83725234	83725234	A	G	ENSMUST00000075843.12	1	ENSMUSG00000002885	missense	M/T	563	Adgre5	ENSMUST00000075843.12:c.1688T>C	ENSMUSP00000075240.6:p.Met563Thr	H-2-Kb	8	7	5	SSRTTVHL	SSRTMVHL	SMMPMBEC	310.27	134.196	0.433	192	0.094	344.132	130.589	0.379	73.79	367.09	280.6	1261.9	126.9813676	321.1737185	134.1961326	310.2701531	M6_p20	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.095	192	0	0	NA	8qC2	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.446148081	sgMsh2	cell line
chr8	111713461	111713461	T	A	ENSMUST00000166232.3	1	ENSMUSG00000031955	missense	S/C	634	Bcar1	ENSMUST00000166232.3:c.1900A>T	ENSMUSP00000129584.2:p.Ser634Cys	H-2-Kb	8	11	1	CSIQSRPL	SSIQSRPL	SMM	236.995	82.175	0.347	108	0.102	403.653	90.714	0.225	64.83	471.77	297.7	602.8	82.17505435	236.9954455	99.25216755	335.5366776	M6_p20	-0.414285714	-0.414285714	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.11	108	0	0	NA	8qE1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.516592515	sgMsh2	cell line
chr8	71461477	71461477	A	G	ENSMUST00000008094.9	1	ENSMUSG00000007950	missense	V/A	169	Abhd8	ENSMUST00000008094.9:c.506T>C	ENSMUSP00000008094.8:p.Val169Ala	H-2-Kb	9	10	2	VALFFIHGV	VVLFFIHGV	NetMHCpan	51	110.7	2.171	98	0.102	130.445	161.051	1.235	106.1	72.91	110.7	51	211.4024421	187.9792879	261.3665468	226.073678	M6_p20	2.071428571	2.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.116	98	0	0	NA	8qB3.3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.544770289	sgMsh2	cell line
chr8	104954091	104954091	A	G	ENSMUST00000076384.5	1	ENSMUSG00000062826	missense	N/S	495	Ces2f	ENSMUST00000076384.5:c.1484A>G	ENSMUSP00000075722.5:p.Asn495Ser	H-2-Kb	9	4	8	KMMKYWASF	KMMKYWANF	NetMHC	79.26	47.46	0.599	429	0.091	95.046	77.397	0.814	47.46	79.26	62.3	85.8	92.49324152	107.67379	92.73635031	104.2917608	M6_p20	-0.057142857	-0.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.097	429	0	0	NA	8qD3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.455540673	sgMsh2	cell line
chr8	83573085	83573085	A	G	ENSMUST00000019382.16	1	ENSMUSG00000031708	missense	V/A	109	Tecr	ENSMUST00000019382.16:c.326T>C	ENSMUSP00000019382.9:p.Val109Ala	H-2-Kb	9	5	7	LLFYFRAPF	LLFYFRVPF	NetMHCpan	61.1	204.7	3.35	12	0.167	140.778	257.224	1.827	369.34	101.98	204.7	61.1	271.0878168	187.9792879	243.3604501	179.5767056	M6_p20	0.4	1.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe	2	0.273	12	0	0	NA	8qC2	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	2	1	sgMsh2	cell line
chr8	109551631	109551631	C	T	ENSMUST00000042601.8	1	ENSMUSG00000037993	missense	D/N	1138	Dhx38	ENSMUST00000042601.8:c.3412G>A	ENSMUSP00000047865.7:p.Asp1138Asn	H-2-Kb	9	10	2	VNGEWLAEL	VDGEWLAEL	NetMHC	116.53	3630.39	31.154	211	0.071	130.917	2132.941	16.292	3630.39	116.53	5738.1	292.5	635.4918716	125.9244318	562.6651281	135.909558	M6_p20	0.157142857	0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.077	211	0	0	NA	8qD3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.361614761	sgMsh2	cell line
chr8	88308681	88308681	T	G	ENSMUST00000171456.8	1	ENSMUSG00000031659	missense	L/R	71	Adcy7	ENSMUST00000171456.8:c.212T>G	ENSMUSP00000132528.1:p.Leu71Arg	H-2-Kb	9	8	4	TAFRMLTLF	TAFLMLTLF	NetMHCpan	130.1	292.7	2.25	202	0.158	139.907	123.623	0.884	121.28	130.84	292.7	130.1	101.8849414	148.9738357	125.9650316	169.531342	M6_p20	1.414285714	1.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.173	202	0	0	NA	8qC3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.812459138	sgMsh2	cell line
chr8	91096777	91096777	A	C	ENSMUST00000034091.7	1	ENSMUSG00000031666	missense	K/N	487	Rbl2	ENSMUST00000034091.7:c.1461A>C	ENSMUSP00000034091.7:p.Lys487Asn	H-2-Kb	9	10	2	NNHFRFAEM	NKHFRFAEM	NetMHC	229.62	1954.12	8.51	152	0.184	250.217	1579.731	6.313	1954.12	229.62	4212.7	309.8	1205.341196	256.5133662	1077.085055	243.9214539	M6_p20	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	152	0	0	NA	8qC4	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.939259119	sgMsh2	cell line
chr8	72002469	72002469	A	T	ENSMUST00000003574.4	1	ENSMUSG00000003484	missense	C/S	88	Cyp4f18	ENSMUST00000003574.4:c.262T>A	ENSMUSP00000003574.4:p.Cys88Ser	H-2-Kb	9	10	2	ASCWWVGPL	ACCWWVGPL	NetMHCpan	203.7	2136.6	10.489	142	0.141	285.435	2448.939	8.58	3889.69	231.83	2136.6	203.7	2761.277156	654.8020042	964.3840079	339.0392667	M6_p20	0.957142857	0.957142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.147	142	0	0	NA	8qB3.3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.690355452	sgMsh2	cell line
chr8	88308681	88308681	T	G	ENSMUST00000171456.8	1	ENSMUSG00000031659	missense	L/R	71	Adcy7	ENSMUST00000171456.8:c.212T>G	ENSMUSP00000132528.1:p.Leu71Arg	H-2-Kb	9	11	1	RMLTLFVAL	LMLTLFVAL	NetMHCpan	133.8	233.9	1.748	202	0.158	236.285	189.074	0.8	243.12	268.08	233.9	133.8	144.2480663	244.4049514	122.5321348	228.165512	M6_p20	2.785714286	2.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.173	202	0	0	NA	8qC3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.812459138	sgMsh2	cell line
chr8	111504457	111504457	A	G	ENSMUST00000034437.7	1	ENSMUSG00000031959	missense	Y/H	40	Wdr59	ENSMUST00000034437.7:c.118T>C	ENSMUSP00000034437.7:p.Tyr40His	H-2-Kb	9	4	8	LSGRRFLHI	LSGRRFLYI	SMMPMBEC	269.308	294.612	1.094	245	0.163	326.091	405.846	1.245	419.85	276.25	493.2	412.7	391.8411118	375.9326101	294.6117067	269.3084622	M6_p20	-0.214285714	0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.173	245	0	0	NA	8qE1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.812459138	sgMsh2	cell line
chr8	83368168	83368168	G	T	ENSMUST00000038692.5	1	ENSMUSG00000035057	missense	W/L	278	Mgat4d	ENSMUST00000038692.5:c.833G>T	ENSMUSP00000041629.5:p.Trp278Leu	H-2-Kb	9	11	1	LFFIEFSVL	WFFIEFSVL	NetMHCpan	181.7	616	3.39	167	0.144	206.5	409.13	1.981	504.13	333.75	616	181.7	314.1304236	213.3585248	280.0593007	199.6411211	M6_p20	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.156	167	0	0	NA	8qC2	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.732622113	sgMsh2	cell line
chr8	83573085	83573085	A	G	ENSMUST00000019382.16	1	ENSMUSG00000031708	missense	V/A	109	Tecr	ENSMUST00000019382.16:c.326T>C	ENSMUSP00000019382.9:p.Val109Ala	H-2-Kb	9	3	9	IYLLFYFRA	IYLLFYFRV	SMM	176.649	44.27	0.251	12	0.167	265.748	61.295	0.231	70.32	351.09	272.6	828.8	44.27004873	176.6485187	52.2696991	180.405594	M6_p20	1.314285714	2.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe	2	0.273	12	0	0	NA	8qC2	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	2	1	sgMsh2	cell line
chr8	86527358	86527358	TA	T	ENSMUST00000131423.7	5	ENSMUSG00000036872	FS	F/X	932	Abcc12	ENSMUST00000131423.7:c.2796del	ENSMUSP00000122402.1:p.Phe932LeufsTer8	H-2-Kb	9	8	4	QQFLWWCLF	NA	SMM	208.502	NA	NA	59	0.186	339.211	NA	NA	NA	364.19	NA	826.8	NA	208.5018919	NA	314.2317036	M6_p20	1.985714286	1.985714286	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.19	59	0	0	NA	8qC3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.892296163	sgMsh2	cell line
chr8	91220227	91220227	G	A	ENSMUST00000047783.13	1	ENSMUSG00000033282	missense	H/Y	1249	Rpgrip1l	ENSMUST00000047783.13:c.3745C>T	ENSMUSP00000042702.7:p.His1249Tyr	H-2-Kb	9	5	7	VTVEALYAL	VTVEALHAL	NetMHCpan	344.5	439.4	1.275	241	0.129	475.124	773.172	1.627	789.32	381.25	439.4	344.5	757.0246132	568.9970306	962.1659863	803.9888022	M6_p20	1.514285714	1.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.146	241	0	0	NA	8qC4	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.685659157	sgMsh2	cell line
chr8	105178615	105178615	A	T	ENSMUST00000052209.8	1	ENSMUSG00000031885	missense	N/I	63	Cbfb	ENSMUST00000052209.8:c.188A>T	ENSMUSP00000059382.2:p.Asn63Ile	H-2-Kb	9	3	9	IAFVATGTI	IAFVATGTN	NetMHCpan	147.4	7924.2	53.76	104	0.087	476.809	5159.061	10.82	13674.64	401.4	7924.2	147.4	2393.922023	552.2172896	1762.990613	624.0939895	M6_p20	1.642857143	2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.094	104	0	0	NA	8qD3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.441451786	sgMsh2	cell line
chr8	111504457	111504457	A	G	ENSMUST00000034437.7	1	ENSMUSG00000031959	missense	Y/H	40	Wdr59	ENSMUST00000034437.7:c.118T>C	ENSMUSP00000034437.7:p.Tyr40His	H-2-Kb	9	7	5	RRFLHIVNL	RRFLYIVNL	NetMHCpan	322.2	193.1	0.599	245	0.163	490.433	359.657	0.733	288.54	439.8	193.1	322.2	440.6664633	549.6800816	430.7745129	541.0656958	M6_p20	1.771428571	1.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.173	245	0	0	NA	8qE1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.812459138	sgMsh2	cell line
chr8	83573085	83573085	A	G	ENSMUST00000019382.16	1	ENSMUSG00000031708	missense	V/A	109	Tecr	ENSMUST00000019382.16:c.326T>C	ENSMUSP00000019382.9:p.Val109Ala	H-2-Kb	9	6	6	LFYFRAPFI	LFYFRVPFI	SMMPMBEC	374.326	289.901	0.774	12	0.167	405.671	425.202	1.048	509.23	586.97	495.5	429.3	354.9032693	382.0410236	289.9011913	374.3260056	M6_p20	0.642857143	0.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe	2	0.273	12	0	0	NA	8qC2	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	2	1	sgMsh2	cell line
chr8	104954091	104954091	A	G	ENSMUST00000076384.5	1	ENSMUSG00000062826	missense	N/S	495	Ces2f	ENSMUST00000076384.5:c.1484A>G	ENSMUSP00000075722.5:p.Asn495Ser	H-2-Kb	9	10	2	ASFARYGNP	ANFARYGNP	SMM	123.058	130.951	1.064	429	0.091	497.296	611.771	1.23	1518.19	842.45	1054.4	872.8	130.951356	123.0580418	169.1414308	152.1423079	M6_p20	-0.957142857	-0.085714286	FALSE	FALSE	TRUE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.097	429	0	0	NA	8qD3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.455540673	sgMsh2	cell line
chr9	18312832	18312832	A	T	ENSMUST00000001825.8	1	ENSMUSG00000001774	missense	T/S	303	Chordc1	ENSMUST00000001825.8:c.907A>T	ENSMUSP00000001825.7:p.Thr303Ser	H-2-Db	9	10	2	ISMRKAEPM	ITMRKAEPM	NetMHCpan	192.6	893.7	4.64	244	0.09	316.395	1499.69	4.74	1501.18	222	893.7	192.6	1620.391663	410.7901297	1498.200715	440.1188809	M6_p20	-1.128571429	-0.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.098	244	0	0	NA	9qA2	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.460236968	sgMsh2	cell line
chr9	38877830	38877830	T	C	ENSMUST00000078289.2	NA	ENSMUSG00000064333	missense	I/T	218	Olfr926	ENSMUST00000078289.2:c.653T>C	ENSMUSP00000077405.2:p.Ile218Thr	H-2-Db	9	8	4	YAFTLTSIL	YAFILTSIL	NetMHC	302.44	508.52	1.681	628	0.174	427.2	529.423	1.239	508.52	302.44	347.5	317.9	550.3259602	541.5268566	555.3541224	536.5003381	M6_p20	1.814285714	1.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.177	628	0	0	NA	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.83124432	sgMsh2	cell line
chr9	19921049	19921049	T	C	ENSMUST00000057596.9	1	ENSMUSG00000051118	missense	V/A	280	Olfr77	ENSMUST00000057596.9:c.839T>C	ENSMUSP00000058810.7:p.Val280Ala	H-2-Db	9	7	5	IMYTAVTPM	IMYTVVTPM	NetMHC	315.26	884.72	2.806	269	0.156	386.76	635.171	1.642	884.72	315.26	665.6	378.5	540.2813794	395.0208326	604.7418164	527.9222909	M6_p20	0.514285714	1.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.152	269	0	0	NA	9qA3	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.71383693	sgMsh2	cell line
chr9	39018653	39018653	T	C	ENSMUST00000214410.1	5	ENSMUSG00000058820	missense	D/G	296	Olfr146	ENSMUST00000214410.1:c.887A>G	ENSMUSP00000149294.1:p.Asp296Gly	H-2-Db	10	5	7	YSLRNKGVKI	YSLRNKDVKI	NetMHC	25.83	9.54	0.369	207	0.082	498.433	501.526	1.006	9.54	25.83	27.5	125.4	975.5510484	871.4651012	1495.099169	1357.28172	M6_p20	-1.071428571	-0.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.088	207	0	0	NA	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.413274012	sgMsh2	cell line
chr9	38877830	38877830	T	C	ENSMUST00000078289.2	NA	ENSMUSG00000064333	missense	I/T	218	Olfr926	ENSMUST00000078289.2:c.653T>C	ENSMUSP00000077405.2:p.Ile218Thr	H-2-Kb	8	6	6	ISYAFTLT	ISYAFILT	NetMHC	8.32	17.61	2.117	628	0.174	18.314	25.95	1.417	17.61	8.32	25	13.2	36.20261985	32.78989304	26.89923939	23.42825811	M6_p20	0.7	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.177	628	0	0	NA	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.83124432	sgMsh2	cell line
chr9	21343176	21343176	T	C	ENSMUST00000034697.7	1	ENSMUSG00000057193	missense	V/A	251	Slc44a2	ENSMUST00000034697.7:c.752T>C	ENSMUSP00000034697.7:p.Val251Ala	H-2-Kb	8	5	7	LSLLFIAL	LSLLFIVL	NetMHC	10.35	60.08	5.805	285	0.084	16.454	49.66	3.018	60.08	10.35	81.3	24	39.24099402	16.66249377	36.53759857	16.24575876	M6_p20	2.814285714	2.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.089	285	0	0	NA	9qA3	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.417970308	sgMsh2	cell line
chr9	19921049	19921049	T	C	ENSMUST00000057596.9	1	ENSMUSG00000051118	missense	V/A	280	Olfr77	ENSMUST00000057596.9:c.839T>C	ENSMUSP00000058810.7:p.Val280Ala	H-2-Kb	8	5	7	TSIMYTAV	TSIMYTVV	NetMHC	11.61	60.48	5.209	269	0.156	34.958	85.921	2.458	60.48	11.61	48.7	20.4	140.8445349	59.80534499	111.3627636	49.51536674	M6_p20	1.371428571	1.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.152	269	0	0	NA	9qA3	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.71383693	sgMsh2	cell line
chr9	39426542	39426542	G	T	ENSMUST00000073895.3	NA	ENSMUSG00000058856	missense	H/Q	176	Olfr952	ENSMUST00000073895.3:c.528C>A	ENSMUSP00000073558.3:p.His176Gln	H-2-Kb	8	9	3	INQYFCDL	INHYFCDL	NetMHC	37.83	26.98	0.713	156	0.179	77.132	50.321	0.652	26.98	37.83	29.4	71.9	71.90183929	82.36448742	71.24263926	104.4094962	M6_p20	-0.385714286	-0.285714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.183	156	0	0	NA	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.859422094	sgMsh2	cell line
chr9	38539211	38539211	GT	G	ENSMUST00000215122.1	5	ENSMUSG00000060114	FS	C/X	105	Olfr910	ENSMUST00000215122.1:c.321del	ENSMUSP00000149263.1:p.Phe107LeufsTer9	H-2-Kb	8	6	8	QLYFFCFL	QLYFFCFF	SMM	34.494	560.712	16.255	678	0.058	54.717	600.357	10.972	1082.4	86.51	599.9	61.6	560.7121928	34.49371732	600.8139392	47.83436356	M6_p20	2.457142857	2.457142857	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.054	678	0	0	NA	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.253599962	sgMsh2	cell line
chr9	38877830	38877830	T	C	ENSMUST00000078289.2	NA	ENSMUSG00000064333	missense	I/T	218	Olfr926	ENSMUST00000078289.2:c.653T>C	ENSMUSP00000077405.2:p.Ile218Thr	H-2-Kb	8	4	8	VIISYAFT	VIISYAFI	SMMPMBEC	73.07	22.322	0.305	628	0.174	96.651	20.161	0.209	9	92.9	18	419.9	22.89496585	100.4014535	22.32235446	73.07015019	M6_p20	1.542857143	2.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.177	628	0	0	NA	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.83124432	sgMsh2	cell line
chr8	124028933	124028933	T	C	ENSMUST00000034457.8	1	ENSMUSG00000031976	missense	Y/H	460	Urb2	ENSMUST00000034457.8:c.1378T>C	ENSMUSP00000034457.8:p.Tyr460His	H-2-Kb	8	7	5	VFQTHAKL	VFQTYAKL	SMM	70.915	18.312	0.258	204	0.044	106.19	20.473	0.193	16.15	114.49	51	301.1	18.31217795	70.91530907	22.63288934	97.89037676	M6_p20	-0.414285714	-0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.062	204	0	0	NA	8qE2	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.291170327	sgMsh2	cell line
chr9	31426949	31426949	T	C	ENSMUST00000048050.8	1	ENSMUSG00000041737	missense	T/A	245	Tmem45b	ENSMUST00000048050.8:c.733A>G	ENSMUSP00000042313.7:p.Thr245Ala	H-2-Kb	8	6	6	VYCFLARV	VYCFLTRV	NetMHCpan	104	145.5	1.399	160	0.206	344.012	994.74	2.892	319.39	115.57	145.5	104	1789.534189	626.2388407	1670.090478	572.4532166	M6_p20	1.328571429	1.328571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.241	160	0	0	NA	9qA4	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr9	35214258	35214258	A	G	ENSMUST00000034541.11	1	ENSMUSG00000032042	missense	M/V	373	Srpr	ENSMUST00000034541.11:c.1117A>G	ENSMUSP00000034541.5:p.Met373Val	H-2-Kb	8	10	2	VVGTFSTV	VMGTFSTV	NetMHC	153.46	124.82	0.813	259	0.131	185.776	206.103	1.109	124.82	153.46	176.3	179.8	255.1173529	220.6683258	235.9065504	191.7520431	M6_p20	1.228571429	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.138	259	0	0	NA	9qA4	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.648088792	sgMsh2	cell line
chr9	39258136	39258136	A	C	ENSMUST00000076903.2	NA	ENSMUSG00000063380	missense	C/G	182	Olfr945	ENSMUST00000076903.2:c.544T>G	ENSMUSP00000076169.2:p.Cys182Gly	H-2-Kb	8	6	6	INHYFGDI	INHYFCDI	NetMHCpan	102	90.9	0.891	375	0.523	276.289	313.213	1.134	217.41	182.12	90.9	102	466.380088	456.8146256	409.0157201	370.458872	M6_p20	-0.657142857	-0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.53	375	0	0	NA	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	2	1	sgMsh2	cell line
chr9	38848204	38848204	C	T	ENSMUST00000217350.1	5	ENSMUSG00000062103	missense	A/V	30	Olfr924	ENSMUST00000217350.1:c.89C>T	ENSMUSP00000149849.1:p.Ala30Val	H-2-Kb	8	11	1	VIYVITVV	AIYVITVV	NetMHC	202.6	1252.59	6.183	255	0.047	217.935	913.276	4.191	1252.59	202.6	849.9	203.2	976.6523514	259.2626764	797.5170931	232.6697911	M6_p20	2.8	2.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.057	255	0	0	NA	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.267688849	sgMsh2	cell line
chr9	39018999	39018999	G	T	ENSMUST00000214410.1	5	ENSMUSG00000058820	missense	L/I	181	Olfr146	ENSMUST00000214410.1:c.541C>A	ENSMUSP00000149294.1:p.Leu181Ile	H-2-Kb	8	4	8	INHYFCDI	INHYFCDL	NetMHCpan	90.9	29.4	0.323	230	0.052	313.213	50.321	0.161	26.98	217.41	29.4	90.9	71.90183929	466.380088	71.24263926	409.0157201	M6_p20	-0.242857143	-0.242857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.05	230	0	0	NA	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.23481478	sgMsh2	cell line
chr9	18945178	18945178	CT	C	ENSMUST00000218385.1	5	ENSMUSG00000095957	FS	F/X	177	Olfr832	ENSMUST00000218385.1:c.535del	ENSMUSP00000151834.1:p.Cys179ValfsTer24	H-2-Kb	8	14	0	NWLIFSSL	NA	NetMHC	230.76	NA	NA	243	0.193	292.404	NA	NA	NA	230.76	NA	280.2	NA	318.9627742	NA	304.6070846	M6_p20	1.771428571	1.771428571	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;Vardict	3	0.198	243	0	0	NA	9qA2	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.929866528	sgMsh2	cell line
chr9	38728677	38728677	T	C	ENSMUST00000001544.11	1	ENSMUSG00000023186	missense	V/A	407	Vwa5a	ENSMUST00000001544.11:c.1220T>C	ENSMUSP00000001544.5:p.Val407Ala	H-2-Kb	8	6	6	SVIREAKL	SVIREVKL	SMMPMBEC	243.075	701.035	2.884	301	0.176	376.099	942.164	2.505	1317.77	366.95	770.7	434	1113.627636	385.2476516	701.0354824	243.0748352	M6_p20	0.342857143	0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.184	301	0	0	NA	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.864118389	sgMsh2	cell line
chr8	122813653	122813653	A	G	ENSMUST00000015160.5	5	ENSMUSG00000015016	missense	D/G	530	Acsf3	ENSMUST00000015160.5:c.1589A>G	ENSMUSP00000015160.5:p.Asp530Gly	H-2-Kb	8	5	7	HSLSHGGL	HSLSHGDL	SMMPMBEC	233.206	636.414	2.729	161	0.124	416.617	1748.884	4.198	2775.43	567.32	4133.4	1087.4	722.337231	265.9132635	636.4144033	233.2061504	M6_p20	0.285714286	0.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.136	161	0	0	NA	8qE1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.638696201	sgMsh2	cell line
chr9	4664969	4664969	C	CA	ENSMUST00000027020.12	5	ENSMUSG00000025892	FS	-/X	95-96	Gria4	ENSMUST00000027020.12:c.285dup	ENSMUSP00000027020.6:p.Gly96TrpfsTer4	H-2-Kb	8	7	6	VFAIFWTL	VFAIFGLY	SMM	69.781	2628.694	37.67	121	0.198	175.11	4715.847	26.931	7797.57	572.28	6803	236	2628.693795	69.78145169	2386.382195	114.219433	M6_p20	2.014285714	2.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.185	121	0	0	NA	9qA1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.868814685	sgMsh2	cell line
chr8	113775269	113775269	G	A	ENSMUST00000093113.4	1	ENSMUSG00000053399	missense	T/I	320	Adamts18	ENSMUST00000093113.4:c.959C>T	ENSMUSP00000090801.4:p.Thr320Ile	H-2-Kb	8	6	6	TTYILIVM	TTYILTVM	SMM	348.129	315.312	0.906	295	0.122	404.208	322.362	0.798	371.96	735.65	145.7	430.2	315.3116375	348.1288376	329.4124431	378.2160895	M6_p20	2.414285714	2.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.136	295	0	0	NA	8qE1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.638696201	sgMsh2	cell line
chr9	31327436	31327436	T	C	ENSMUST00000074510.3	5	ENSMUSG00000042496	missense	I/T	159	Prdm10	ENSMUST00000074510.3:c.476T>C	ENSMUSP00000074104.3:p.Ile159Thr	H-2-Kb	8	8	4	VLYTDRFL	VLYIDRFL	SMMPMBEC	165.097	182.701	1.107	78	0.128	351.288	303.271	0.863	810.78	784.8	421.3	528.5	185.2422298	174.0764414	182.7006111	165.0973111	M6_p20	0.057142857	0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.129	78	0	0	NA	9qA4	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.605822132	sgMsh2	cell line
chr9	21343176	21343176	T	C	ENSMUST00000034697.7	1	ENSMUSG00000057193	missense	V/A	251	Slc44a2	ENSMUST00000034697.7:c.752T>C	ENSMUSP00000034697.7:p.Val251Ala	H-2-Kb	9	5	7	LSLLFIALL	LSLLFIVLL	NetMHC	12.96	84.48	6.519	285	0.084	59.694	117.692	1.972	84.48	12.96	351.8	39.2	115.6405104	80.18811416	119.7429629	88.35883884	M6_p20	3.471428571	3.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.089	285	0	0	NA	9qA3	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.417970308	sgMsh2	cell line
chr9	31426949	31426949	T	C	ENSMUST00000048050.8	1	ENSMUSG00000041737	missense	T/A	245	Tmem45b	ENSMUST00000048050.8:c.733A>G	ENSMUSP00000042313.7:p.Thr245Ala	H-2-Kb	9	5	7	LVYCFLARV	LVYCFLTRV	NetMHC	14.04	29.65	2.112	160	0.206	37.647	48.836	1.297	29.65	14.04	37.4	30.2	60.27122243	45.09309038	66.41252616	48.78092149	M6_p20	1.328571429	2.514285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.241	160	0	0	NA	9qA4	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr9	18945178	18945178	CT	C	ENSMUST00000218385.1	5	ENSMUSG00000095957	FS	F/X	177	Olfr832	ENSMUST00000218385.1:c.535del	ENSMUSP00000151834.1:p.Cys179ValfsTer24	H-2-Kb	9	13	1	VNWLIFSSL	NA	NetMHCpan	13.8	NA	NA	243	0.193	37.802	NA	NA	NA	16.16	NA	13.8	NA	59.44427026	NA	61.69500447	M6_p20	1.771428571	1.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.198	243	0	0	NA	9qA2	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.929866528	sgMsh2	cell line
chr9	39238389	39238389	A	C	ENSMUST00000073248.1	NA	ENSMUSG00000096109	missense	F/V	15	Olfr1537	ENSMUST00000073248.1:c.43T>G	ENSMUSP00000072979.1:p.Phe15Val	H-2-Kb	9	8	4	VTEVFLAGL	VTEFFLAGL	NetMHC	23.57	45.53	1.932	152	0.066	115.598	107.847	0.933	45.53	23.57	84.7	83.2	159.261206	151.7434661	130.9935766	147.9960077	M6_p20	1.785714286	1.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.074	152	0	0	NA	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.347525874	sgMsh2	cell line
chr8	124028714	124028714	T	C	ENSMUST00000034457.8	1	ENSMUSG00000031976	missense	F/L	387	Urb2	ENSMUST00000034457.8:c.1159T>C	ENSMUSP00000034457.8:p.Phe387Leu	H-2-Kb	9	9	3	TQLHFYRRV	TQFHFYRRV	NetMHC	29.79	12.91	0.433	253	0.166	159.586	53.794	0.337	12.91	29.79	11.9	56.6	96.18558706	269.8422814	94.67820161	262.57296	M6_p20	-0.385714286	-0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.166	253	0	0	NA	8qE2	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.779585069	sgMsh2	cell line
chr9	19921049	19921049	T	C	ENSMUST00000057596.9	1	ENSMUSG00000051118	missense	V/A	280	Olfr77	ENSMUST00000057596.9:c.839T>C	ENSMUSP00000058810.7:p.Val280Ala	H-2-Kb	9	7	5	IMYTAVTPM	IMYTVVTPM	NetMHCpan	21.8	29.2	1.339	269	0.156	55.223	74.818	1.355	54.52	34.57	29.2	21.8	107.1790739	75.87697352	95.11521633	84.77152578	M6_p20	0.514285714	1.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.152	269	0	0	NA	9qA3	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.71383693	sgMsh2	cell line
chr9	39078200	39078200	A	G	ENSMUST00000056499.3	NA	ENSMUSG00000048501	missense	F/L	182	Olfr938	ENSMUST00000056499.3:c.544T>C	ENSMUSP00000055053.2:p.Phe182Leu	H-2-Kb	9	3	9	INHYFCDLL	INHYFCDLF	NetMHC	40.99	129.13	3.15	236	0.089	94.887	238.502	2.514	129.13	40.99	365.4	57	223.9288243	132.7730709	253.0754397	146.3019114	M6_p20	0.7	0.7	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.088	236	0	0	NA	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.413274012	sgMsh2	cell line
chr8	124028933	124028933	T	C	ENSMUST00000034457.8	1	ENSMUSG00000031976	missense	Y/H	460	Urb2	ENSMUST00000034457.8:c.1378T>C	ENSMUSP00000034457.8:p.Tyr460His	H-2-Kb	9	6	6	TVFQTHAKL	TVFQTYAKL	NetMHC	42.12	10.72	0.255	204	0.044	141.749	43.932	0.31	10.72	42.12	14.2	48.4	86.71814915	303.4659719	73.66310144	235.0985768	M6_p20	-0.414285714	0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.062	204	0	0	NA	8qE2	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.291170327	sgMsh2	cell line
chr9	38539211	38539211	GT	G	ENSMUST00000215122.1	5	ENSMUSG00000060114	FS	C/X	105	Olfr910	ENSMUST00000215122.1:c.321del	ENSMUSP00000149263.1:p.Phe107LeufsTer9	H-2-Kb	9	5	9	TQLYFFCFL	TQLYFFCFF	NetMHCpan	42.2	412.6	9.777	678	0.058	119.532	347.361	2.906	332.27	47.59	412.6	42.2	322.9311952	191.4740838	362.4515823	209.5318271	M6_p20	2.457142857	2.457142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.054	678	0	0	NA	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.253599962	sgMsh2	cell line
chr9	38877830	38877830	T	C	ENSMUST00000078289.2	NA	ENSMUSG00000064333	missense	I/T	218	Olfr926	ENSMUST00000078289.2:c.653T>C	ENSMUSP00000077405.2:p.Ile218Thr	H-2-Kb	9	4	8	VIISYAFTL	VIISYAFIL	NetMHCpan	24.7	68.8	2.785	628	0.174	81.467	135.846	1.668	144.31	48.88	68.8	24.7	127.382568	114.0538632	210.9842323	178.7516256	M6_p20	1.442857143	2.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.177	628	0	0	NA	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.83124432	sgMsh2	cell line
chr8	113775269	113775269	G	A	ENSMUST00000093113.4	1	ENSMUSG00000053399	missense	T/I	320	Adamts18	ENSMUST00000093113.4:c.959C>T	ENSMUSP00000090801.4:p.Thr320Ile	H-2-Kb	9	11	1	IVMNMVSSL	TVMNMVSSL	NetMHCpan	52.8	154	2.917	295	0.122	176.346	339.812	1.927	210.54	69.39	154	52.8	522.5285205	304.8667072	469.0833305	283.3022345	M6_p20	0.957142857	1.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.136	295	0	0	NA	8qE1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.638696201	sgMsh2	cell line
chr9	37381811	37381811	A	G	ENSMUST00000051839.8	1	ENSMUSG00000046240	missense	I/V	233	Hepacam	ENSMUST00000051839.8:c.697A>G	ENSMUSP00000054105.7:p.Ile233Val	H-2-Kb	9	11	1	VTVYRRSSL	ITVYRRSSL	NetMHC	110.69	128.71	1.163	154	0.182	149.029	208.618	1.4	128.71	110.69	305.3	322.1	223.9288243	152.0932709	193.3080768	145.9654263	M6_p20	-0.557142857	-0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.186	154	0	0	NA	9qA4	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.87351098	sgMsh2	cell line
chr9	19318903	19318903	A	G	ENSMUST00000220268.1	5	ENSMUSG00000049229	missense	Y/C	129	Olfr844	ENSMUST00000220268.1:c.386A>G	ENSMUSP00000153910.1:p.Tyr129Cys	H-2-Kb	9	6	6	MAYDRCVAI	MAYDRYVAI	NetMHCpan	132.7	14.4	0.109	312	0.144	145.305	30.259	0.208	27.08	145.65	14.4	132.7	39.27443988	184.1238299	33.43874735	144.9606074	M6_p20	0.528571429	0.528571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.147	312	0	0	NA	9qA2	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.690355452	sgMsh2	cell line
chr9	38539211	38539211	GT	G	ENSMUST00000215122.1	5	ENSMUSG00000060114	FS	C/X	105	Olfr910	ENSMUST00000215122.1:c.321del	ENSMUSP00000149263.1:p.Phe107LeufsTer9	H-2-Kb	9	6	8	QLYFFCFLL	QLYFFCFFV	SMM	111.201	458.258	4.121	678	0.058	155.068	657.156	4.238	725.13	151.92	2713.3	336.2	458.2579416	111.2013347	589.1827186	158.2158541	M6_p20	2.457142857	2.457142857	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.054	678	0	0	NA	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.253599962	sgMsh2	cell line
chr9	18312832	18312832	A	T	ENSMUST00000001825.8	1	ENSMUSG00000001774	missense	T/S	303	Chordc1	ENSMUST00000001825.8:c.907A>T	ENSMUSP00000001825.7:p.Thr303Ser	H-2-Kb	9	10	2	ISMRKAEPM	ITMRKAEPM	NetMHC	163.53	340.06	2.079	244	0.09	267.893	457.254	1.707	340.06	163.53	323.5	182.4	641.3720055	383.8044448	574.4470454	353.3865369	M6_p20	-1.128571429	-0.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.098	244	0	0	NA	9qA2	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.460236968	sgMsh2	cell line
chr9	19361075	19361075	A	C	ENSMUST00000214810.1	5	ENSMUSG00000058692	missense	S/R	93	Olfr846	ENSMUST00000214810.1:c.279T>G	ENSMUSP00000150672.1:p.Ser93Arg	H-2-Kb	9	8	4	QSIRYTGCL	QSISYTGCL	NetMHC	171.76	233.43	1.359	575	0.07	352.648	334.783	0.949	233.43	171.76	415.7	276.5	302.0716724	450.9309038	367.4937861	428.7952838	M6_p20	0.557142857	0.557142857	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.072	575	0	0	NA	9qA2	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.338133283	sgMsh2	cell line
chr9	39426542	39426542	G	T	ENSMUST00000073895.3	NA	ENSMUSG00000058856	missense	H/Q	176	Olfr952	ENSMUST00000073895.3:c.528C>A	ENSMUSP00000073558.3:p.His176Gln	H-2-Kb	9	9	3	INQYFCDLF	INHYFCDLF	NetMHC	190.01	129.13	0.68	156	0.179	485.909	238.502	0.491	129.13	190.01	365.4	979.6	223.9288243	455.1033161	253.0754397	516.713728	M6_p20	0.514285714	0.514285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.183	156	0	0	NA	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.859422094	sgMsh2	cell line
chr9	38539211	38539211	GT	G	ENSMUST00000215122.1	5	ENSMUSG00000060114	FS	C/X	105	Olfr910	ENSMUST00000215122.1:c.321del	ENSMUSP00000149263.1:p.Phe107LeufsTer9	H-2-Kb	9	8	6	YFFCFLLSL	YFFCFFVIS	SMM	105.223	201.423	1.914	678	0.058	162.986	1508.892	9.258	2677.18	195.88	7780.1	333.6	201.4234359	105.2228353	340.6042008	130.0918231	M6_p20	2.671428571	2.671428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.054	678	0	0	NA	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.253599962	sgMsh2	cell line
chr9	19921049	19921049	T	C	ENSMUST00000057596.9	1	ENSMUSG00000051118	missense	V/A	280	Olfr77	ENSMUST00000057596.9:c.839T>C	ENSMUSP00000058810.7:p.Val280Ala	H-2-Kb	9	4	8	ITSIMYTAV	ITSIMYTVV	NetMHC	220.87	1139.98	5.161	269	0.156	327.422	640.54	1.956	1139.98	220.87	465.9	229	753.5464011	534.6997733	527.5334467	425.8434778	M6_p20	1.371428571	1.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.152	269	0	0	NA	9qA3	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.71383693	sgMsh2	cell line
chr9	39258136	39258136	A	C	ENSMUST00000076903.2	NA	ENSMUSG00000063380	missense	C/G	182	Olfr945	ENSMUST00000076903.2:c.544T>G	ENSMUSP00000076169.2:p.Cys182Gly	H-2-Kb	9	5	7	VINHYFGDI	VINHYFCDI	NetMHC	248.12	402.57	1.622	375	0.523	313.678	336.411	1.072	402.57	248.12	262.7	378.9	382.9217191	379.4110717	289.9011913	248.4562923	M6_p20	-0.657142857	0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.53	375	0	0	NA	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	2	1	sgMsh2	cell line
chr9	15999264	15999264	G	T	ENSMUST00000082170.5	5	ENSMUSG00000074505	missense	T/N	1814	Fat3	ENSMUST00000082170.5:c.5441C>A	ENSMUSP00000080808.5:p.Thr1814Asn	H-2-Kb	9	10	2	SNAKKFFTV	STAKKFFTV	NetMHCpan	202.5	308.7	1.524	220	0.15	290.184	427.855	1.474	340.35	252.19	308.7	202.5	515.3591605	328.178405	624.0939895	426.8251484	M6_p20	0.442857143	0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.156	220	0	0	NA	9qA2	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.732622113	sgMsh2	cell line
chr9	39258136	39258136	A	C	ENSMUST00000076903.2	NA	ENSMUSG00000063380	missense	C/G	182	Olfr945	ENSMUST00000076903.2:c.544T>G	ENSMUSP00000076169.2:p.Cys182Gly	H-2-Kb	9	6	6	INHYFGDIL	INHYFCDIL	NetMHCpan	249.4	114.5	0.459	375	0.523	350.747	161.261	0.46	107.57	280.66	114.5	249.4	208.0223508	420.8332054	225.553723	456.2995075	M6_p20	0.385714286	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.53	375	0	0	NA	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	2	1	sgMsh2	cell line
chr9	38728677	38728677	T	C	ENSMUST00000001544.11	1	ENSMUSG00000023186	missense	V/A	407	Vwa5a	ENSMUST00000001544.11:c.1220T>C	ENSMUSP00000001544.5:p.Val407Ala	H-2-Kb	9	5	7	FSVIREAKL	FSVIREVKL	SMMPMBEC	225.035	304.965	1.355	301	0.176	311.161	550.888	1.77	617.48	286.5	1285.3	628	484.2950164	335.8226621	304.9650004	225.0349638	M6_p20	0.342857143	0.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.184	301	0	0	NA	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.864118389	sgMsh2	cell line
chr9	38877830	38877830	T	C	ENSMUST00000078289.2	NA	ENSMUSG00000064333	missense	I/T	218	Olfr926	ENSMUST00000078289.2:c.653T>C	ENSMUSP00000077405.2:p.Ile218Thr	H-2-Kb	9	6	6	ISYAFTLTS	ISYAFILTS	SMM	114.844	113.792	0.991	628	0.174	154.609	145.943	0.944	348.34	311.88	116.8	119	113.7915466	114.8444468	175.0854271	190.2172944	M6_p20	0.7	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.177	628	0	0	NA	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.83124432	sgMsh2	cell line
chr9	39018999	39018999	G	T	ENSMUST00000214410.1	5	ENSMUSG00000058820	missense	L/I	181	Olfr146	ENSMUST00000214410.1:c.541C>A	ENSMUSP00000149294.1:p.Leu181Ile	H-2-Kb	9	4	8	INHYFCDII	INHYFCDLI	NetMHC	329.69	127.26	0.386	230	0.052	436.374	256.697	0.588	127.26	329.69	183.7	356.2	329.6932077	516.547186	338.259498	521.4948213	M6_p20	0.9	0.9	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.05	230	0	0	NA	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.23481478	sgMsh2	cell line
chr9	39426542	39426542	G	T	ENSMUST00000073895.3	NA	ENSMUSG00000058856	missense	H/Q	176	Olfr952	ENSMUST00000073895.3:c.528C>A	ENSMUSP00000073558.3:p.His176Gln	H-2-Kb	9	8	4	KINQYFCDL	KINHYFCDL	NetMHCpan	305.8	312.7	1.023	156	0.179	468.801	471.489	1.006	457.41	357.84	312.7	305.8	590.3505878	711.3936757	485.5679351	579.7623384	M6_p20	-0.385714286	-0.285714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.183	156	0	0	NA	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.859422094	sgMsh2	cell line
chr9	38877830	38877830	T	C	ENSMUST00000078289.2	NA	ENSMUSG00000064333	missense	I/T	218	Olfr926	ENSMUST00000078289.2:c.653T>C	ENSMUSP00000077405.2:p.Ile218Thr	H-2-Kb	9	8	4	YAFTLTSIL	YAFILTSIL	NetMHCpan	225.9	241.6	1.069	628	0.174	371.69	335.393	0.902	407.04	376.85	241.6	225.9	314.1304236	366.5303993	356.6563823	417.1094219	M6_p20	1.814285714	1.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.177	628	0	0	NA	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.83124432	sgMsh2	cell line
chr9	27319526	27319526	A	G	ENSMUST00000133213.2	5	ENSMUSG00000034275	missense	D/G	275	Igsf9b	ENSMUST00000133213.2:c.824A>G	ENSMUSP00000117017.1:p.Asp275Gly	H-2-Kb	9	6	6	VYFQNGLKL	VYFQNDLKL	NetMHCpan	424.6	721.3	1.699	267	0.225	494.857	455.569	0.921	479.51	521.71	721.3	424.6	431.6283877	635.4918716	329.7995054	468.0044688	M6_p20	-0.128571429	0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	267	0	0	NA	9qA4	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr9	38877830	38877830	T	C	ENSMUST00000078289.2	NA	ENSMUSG00000064333	missense	I/T	218	Olfr926	ENSMUST00000078289.2:c.653T>C	ENSMUSP00000077405.2:p.Ile218Thr	H-2-Kb	10	6	6	ISYAFTLTSI	ISYAFILTSI	NetMHCpan	22.8	25.1	1.101	628	0.174	444.623	466.58	1.049	45.33	40.34	25.1	22.8	887.8303764	883.7511664	893.0175625	848.9067757	M6_p20	1.528571429	1.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.177	628	0	0	NA	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.83124432	sgMsh2	cell line
chr9	71725437	71725437	T	C	ENSMUST00000072899.8	5	ENSMUSG00000032232	missense	K/E	211	Cgnl1	ENSMUST00000072899.8:c.631A>G	ENSMUSP00000072672.2:p.Lys211Glu	H-2-Db	9	9	3	LAETNMTAI	LAKTNMTAI	NetMHC	56.8	39.51	0.696	164	0.091	78.127	105.768	1.354	39.51	56.8	373.7	298.9	117.657604	85.03936332	93.87933401	71.21475754	M6_p20	-0.028571429	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.108	164	0	0	NA	9qD	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.507199924	sgMsh2	cell line
chr9	40978194	40978194	A	G	ENSMUST00000180384.2	1	ENSMUSG00000032021	missense	L/P	295	Crtam	ENSMUST00000180384.2:c.884T>C	ENSMUSP00000137837.1:p.Leu295Pro	H-2-Db	9	4	8	SGILLLTPV	SGILLLTLV	NetMHC	128.59	1036.29	8.059	183	0.169	206.747	925.094	4.475	1036.29	128.59	1887.2	193.9	707.3266152	219.5937625	813.8980351	245.2279683	M6_p20	2.542857143	2.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.179	183	0	0	NA	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.840636911	sgMsh2	cell line
chr9	39873961	39873961	TA	T	ENSMUST00000215303.2	2	ENSMUSG00000094449	FS	K/X	229	Olfr972	ENSMUST00000215303.2:c.687del	ENSMUSP00000150389.1:p.Lys229AsnfsTer57	H-2-Db	9	5	7	ASILQINPL	ASILQIKST	NetMHCpan	210.7	26622.6	126.353	338	0.183	343.127	27752.058	80.88	38748.74	660.68	26622.6	210.7	28881.51695	411.7370988	16276.83646	274.5174778	M6_p20	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;Vardict	3	0.18	338	0	0	NA	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.845333207	sgMsh2	cell line
chr9	39719434	39719434	T	C	ENSMUST00000215164.2	5	ENSMUSG00000095839	missense	I/T	69	Olfr965	ENSMUST00000215164.2:c.206T>C	ENSMUSP00000150401.1:p.Ile69Thr	H-2-Kb	8	6	6	SSLSFTDL	SSLSFIDL	NetMHC	7.06	8.67	1.228	483	0.17	21.504	26.028	1.21	8.67	7.06	22.9	16.6	29.15680954	26.40827294	32.48927349	28.29697428	M6_p20	0.657142857	0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.166	483	0	0	NA	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.779585069	sgMsh2	cell line
chr9	44694061	44694061	T	C	ENSMUST00000034611.14	1	ENSMUSG00000048537	missense	D/G	1286	Phldb1	ENSMUST00000034611.14:c.3857A>G	ENSMUSP00000034611.8:p.Asp1286Gly	H-2-Kb	8	6	6	RWFVFGRL	RWFVFDRL	NetMHC	11.26	31.59	2.806	185	0.076	15.782	40.028	2.536	31.59	11.26	99.4	40.6	40.99585987	17.44777291	39.06069803	14.11692151	M6_p20	1.114285714	1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.079	185	0	0	NA	9qA5.2	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.371007352	sgMsh2	cell line
chr9	44810718	44810718	A	G	ENSMUST00000002095.10	5	ENSMUSG00000002028	missense	F/L	3774	Kmt2a	ENSMUST00000002095.10:c.11320T>C	ENSMUSP00000002095.3:p.Phe3774Leu	H-2-Kb	8	4	8	SAFDMFNL	SAFDMFNF	NetMHCpan	12.6	87.3	6.929	125	0.168	27.661	422.512	15.275	275.2	18.7	87.3	12.6	595.3056439	36.62182643	569.823033	45.36699358	M6_p20	0.871428571	0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.166	125	0	0	NA	9qA5.2	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.779585069	sgMsh2	cell line
chr9	39470406	39470406	A	G	ENSMUST00000220176.1	5	ENSMUSG00000063176	missense	F/L	107	Olfr955	ENSMUST00000220176.1:c.319T>C	ENSMUSP00000151246.1:p.Phe107Leu	H-2-Kb	8	4	8	QFYFFCTL	QFYFFCTF	SMM	16.701	271.481	16.255	534	0.062	33.212	325.341	9.796	283.62	43.53	387.2	37.2	271.4813499	16.70090478	367.0624846	29.22402293	M6_p20	1.814285714	1.814285714	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;MuSe;Vardict	3	0.065	534	0	0	NA	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.305259214	sgMsh2	cell line
chr9	39873961	39873961	TA	T	ENSMUST00000215303.2	2	ENSMUSG00000094449	FS	K/X	229	Olfr972	ENSMUST00000215303.2:c.687del	ENSMUSP00000150389.1:p.Lys229AsnfsTer57	H-2-Kb	8	23	0	AAHTYQLL	NA	NetMHC	46.15	NA	NA	338	0.183	132.589	NA	NA	NA	46.15	NA	67.6	NA	197.5786438	NA	202.6469166	M6_p20	0.1	0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.18	338	0	0	NA	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.845333207	sgMsh2	cell line
chr9	57612601	57612601	G	A	ENSMUST00000093832.10	1	ENSMUSG00000056271	missense	T/I	251	Lman1l	ENSMUST00000093832.10:c.752C>T	ENSMUSP00000091352.4:p.Thr251Ile	H-2-Kb	8	7	5	LSFLIFSL	LSFLTFSL	NetMHCpan	36.2	25.9	0.715	220	0.141	64.782	51.031	0.788	19.37	47.2	25.9	36.2	100.8648855	123.5207728	76.16229111	82.36448742	M6_p20	2.3	2.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.144	220	0	0	NA	9qB	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.676266565	sgMsh2	cell line
chr9	91364112	91364112	GA	G	ENSMUST00000034927.12	1	ENSMUSG00000032368	FS	F/X	302	Zic1	ENSMUST00000034927.12:c.906del	ENSMUSP00000034927.6:p.Cys304AlafsTer78	H-2-Kb	8	17	0	AAARFSRV	NA	NetMHC	63.39	NA	NA	158	0.127	159.488	NA	NA	NA	63.39	NA	145.3	NA	173.6760767	NA	202.6469166	M6_p20	0.114285714	0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.139	158	0	0	NA	9qE3.2	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.652785087	sgMsh2	cell line
chr9	45183178	45183178	C	A	ENSMUST00000034599.14	1	ENSMUSG00000032091	missense	S/I	145	Tmprss4	ENSMUST00000034599.14:c.434G>T	ENSMUSP00000034599.8:p.Ser145Ile	H-2-Kb	8	11	1	IQPAFRAV	SQPAFRAV	NetMHC	87.31	206.86	2.369	205	0.156	159.809	320.511	2.006	206.86	87.31	724.3	373.3	261.0597994	138.5925865	379.9618556	181.0256018	M6_p20	0.142857143	0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.162	205	0	0	NA	9qA5.2	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.760799886	sgMsh2	cell line
chr9	39470583	39470583	A	C	ENSMUST00000220176.1	5	ENSMUSG00000063176	missense	L/V	48	Olfr955	ENSMUST00000220176.1:c.142T>G	ENSMUSP00000151246.1:p.Leu48Val	H-2-Kb	8	11	1	VILISSQL	LILISSQL	NetMHC	98.86	821.42	8.309	340	0.206	136.134	722.391	5.306	821.42	98.86	855.9	166.2	619.070344	122.3883275	623.3615346	149.8787285	M6_p20	1.642857143	1.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	340	0	0	NA	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.939259119	sgMsh2	cell line
chr9	91364112	91364112	GA	G	ENSMUST00000034927.12	1	ENSMUSG00000032368	FS	F/X	302	Zic1	ENSMUST00000034927.12:c.906del	ENSMUSP00000034927.6:p.Cys304AlafsTer78	H-2-Kb	8	68	0	TSPTFARC	NA	NetMHC	99.41	NA	NA	158	0.127	112.143	NA	NA	NA	99.41	NA	411.3	NA	106.5957771	NA	117.6901185	M6_p20	-0.071428571	-0.071428571	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.139	158	0	0	NA	9qE3.2	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.652785087	sgMsh2	cell line
chr9	39795557	39795557	CT	C	ENSMUST00000213266.1	2	ENSMUSG00000094254	FS	F/X	61	Olfr969	ENSMUST00000213266.1:c.186del	ENSMUSP00000149551.1:p.Leu63SerfsTer21	H-2-Kb	8	8	6	PMYFFSAV	PMYFFLSS	NetMHCpan	120.6	2859.6	23.711	501	0.18	174.056	2636.808	15.149	7386.46	170.39	2859.6	120.6	1468.047136	177.7215122	2414.015198	232.6697911	M6_p20	1.628571429	1.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.178	501	0	0	NA	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.835940616	sgMsh2	cell line
chr9	39873961	39873961	TA	T	ENSMUST00000215303.2	2	ENSMUSG00000094449	FS	K/X	229	Olfr972	ENSMUST00000215303.2:c.687del	ENSMUSP00000150389.1:p.Lys229AsnfsTer57	H-2-Kb	8	6	6	SILQINPL	SILQIKST	NetMHC	181.44	24299.42	133.925	338	0.183	244.103	20486.719	83.927	24299.42	181.44	17328.4	232.5	23645.03711	259.2626764	13144.37679	255.7054591	M6_p20	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;Vardict	3	0.18	338	0	0	NA	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.845333207	sgMsh2	cell line
chr9	64212673	64212673	C	A	ENSMUST00000005066.8	1	ENSMUSG00000004936	missense	V/L	117	Map2k1	ENSMUST00000005066.8:c.349G>T	ENSMUSP00000005066.8:p.Val117Leu	H-2-Kb	8	5	7	IIRELQLL	IIRELQVL	SMM	330.933	442.323	1.337	68	0.221	423.71	939.42	2.217	1585.88	379.92	1226.1	467.5	442.3234863	330.9329418	652.7396586	480.5515695	M6_p20	0.628571429	0.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.238	68	0	0	NA	9qC	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr9	79682114	79682114	T	C	ENSMUST00000071750.12	5	ENSMUSG00000032332	missense	K/R	1053	Col12a1	ENSMUST00000071750.12:c.3158A>G	ENSMUSP00000071662.6:p.Lys1053Arg	H-2-Kb	8	6	6	TSTVLRRL	TSTVLKRL	SMMPMBEC	286.906	526.914	1.837	196	0.061	444.959	1183.139	2.659	1764.08	598.35	2718.1	1355.8	602.1989584	291.5680954	526.9143181	286.906244	M6_p20	0.185714286	0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.074	196	0	0	NA	9qE1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.347525874	sgMsh2	cell line
chr9	39873961	39873961	TA	T	ENSMUST00000215303.2	2	ENSMUSG00000094449	FS	K/X	229	Olfr972	ENSMUST00000215303.2:c.687del	ENSMUSP00000150389.1:p.Lys229AsnfsTer57	H-2-Kb	8	55	0	CPLYFIPL	NA	SMM	129.939	NA	NA	338	0.183	300.671	NA	NA	NA	688.28	NA	422.8	NA	129.9391436	NA	178.5418375	M6_p20	1.485714286	1.485714286	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.18	338	0	0	NA	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.845333207	sgMsh2	cell line
chr9	44810718	44810718	A	G	ENSMUST00000002095.10	5	ENSMUSG00000002028	missense	F/L	3774	Kmt2a	ENSMUST00000002095.10:c.11320T>C	ENSMUSP00000002095.3:p.Phe3774Leu	H-2-Kb	8	5	7	AFDMFNLL	AFDMFNFL	SMMPMBEC	436.255	304.607	0.698	125	0.168	475.688	456.604	0.96	1299.15	783.28	608.6	502.9	297.6733808	448.476819	304.6070846	436.2545806	M6_p20	1.157142857	1.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.166	125	0	0	NA	9qA5.2	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.779585069	sgMsh2	cell line
chr9	59868201	59868201	A	G	ENSMUST00000136740.7	5	ENSMUSG00000039585	missense	R/G	1032	Myo9a	ENSMUST00000136740.7:c.3094A>G	ENSMUSP00000122852.1:p.Arg1032Gly	H-2-Kb	8	6	6	LQRWFGVL	LQRWFRVL	SMM	342.563	319.698	0.933	337	0.128	377.767	367.717	0.973	710.56	858.71	375.9	396	319.6980594	342.5626424	359.5340277	359.5340277	M6_p20	0.214285714	0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.126	337	0	0	NA	9qB	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.591733245	sgMsh2	cell line
chr9	56885911	56885911	A	C	ENSMUST00000035661.6	1	ENSMUSG00000032911	missense	N/T	310	Cspg4	ENSMUST00000035661.6:c.929A>C	ENSMUSP00000038909.5:p.Asn310Thr	H-2-Kb	8	8	4	RTFTRGVL	RTFNRGVL	NetMHCpan	331.6	397.1	1.198	136	0.096	404.565	464.908	1.149	1203.57	1063.51	397.1	331.6	476.1458462	428.2920371	453.6699358	380.8377582	M6_p20	0.642857143	0.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.11	136	0	0	NA	9qB	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.516592515	sgMsh2	cell line
chr9	44810718	44810718	A	G	ENSMUST00000002095.10	5	ENSMUSG00000002028	missense	F/L	3774	Kmt2a	ENSMUST00000002095.10:c.11320T>C	ENSMUSP00000002095.3:p.Phe3774Leu	H-2-Kb	9	4	8	SAFDMFNLL	SAFDMFNFL	NetMHCpan	13.1	14.6	1.115	125	0.168	20.978	33.061	1.576	15.76	14.47	14.6	13.1	50.36281538	27.4859024	65.80365246	39.55942769	M6_p20	1.157142857	1.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.166	125	0	0	NA	9qA5.2	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.779585069	sgMsh2	cell line
chr9	39470406	39470406	A	G	ENSMUST00000220176.1	5	ENSMUSG00000063176	missense	F/L	107	Olfr955	ENSMUST00000220176.1:c.319T>C	ENSMUSP00000151246.1:p.Phe107Leu	H-2-Kb	9	3	9	AQFYFFCTL	AQFYFFCTF	NetMHCpan	9.5	51.1	5.379	534	0.062	39.402	100.23	2.544	96.68	17.27	51.1	9.5	103.7791239	61.53327071	129.1962773	74.68785726	M6_p20	1.814285714	1.814285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;MuSe;Vardict	3	0.065	534	0	0	NA	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.305259214	sgMsh2	cell line
chr9	39511354	39511354	C	T	ENSMUST00000216177.1	3	ENSMUSG00000095322	missense	R/H	122	Olfr957	ENSMUST00000216177.1:c.365G>A	ENSMUSP00000149559.1:p.Arg122His	H-2-Kb	9	7	5	MAYDHYVAI	MAYDRYVAI	NetMHCpan	10.8	14.4	1.333	309	0.071	29.47	30.259	1.027	27.08	22.19	14.4	10.8	39.27443988	40.65462879	33.43874735	36.74937861	M6_p20	0.171428571	0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.075	309	0	0	NA	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.35222217	sgMsh2	cell line
chr9	50649706	50649706	T	C	ENSMUST00000034567.3	1	ENSMUSG00000000168	missense	K/R	347	Dlat	ENSMUST00000034567.3:c.1040A>G	ENSMUSP00000034567.3:p.Lys347Arg	H-2-Kb	9	11	1	RGRVFVSPL	KGRVFVSPL	NetMHC	37.12	36.92	0.995	124	0.129	322.745	257.283	0.797	36.92	37.12	73.9	84.3	440.6664633	561.1900987	556.2243536	692.2293355	M6_p20	1.157142857	1.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.125	124	0	0	NA	9qA5.3	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.587036949	sgMsh2	cell line
chr9	71725634	71725634	T	G	ENSMUST00000072899.8	5	ENSMUSG00000032232	missense	N/T	145	Cgnl1	ENSMUST00000072899.8:c.434A>C	ENSMUSP00000072672.2:p.Asn145Thr	H-2-Kb	9	10	2	LTFQRHPEL	LNFQRHPEL	NetMHCpan	36.8	28.1	0.764	73	0.123	90.799	70.924	0.781	73.26	81.31	28.1	36.8	84.74420308	133.0791444	68.58829388	100.2882377	M6_p20	-1.385714286	-0.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.122	73	0	0	NA	9qD	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.572948062	sgMsh2	cell line
chr9	39470406	39470406	A	G	ENSMUST00000220176.1	5	ENSMUSG00000063176	missense	F/L	107	Olfr955	ENSMUST00000220176.1:c.319T>C	ENSMUSP00000151246.1:p.Phe107Leu	H-2-Kb	9	4	8	QFYFFCTLV	QFYFFCTFV	SMM	98.2	179.933	1.832	534	0.062	131.98	226.449	1.716	202.72	113.56	870.8	481	179.9326599	98.19966359	250.1785091	150.4007493	M6_p20	2.014285714	2.014285714	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;MuSe;Vardict	3	0.065	534	0	0	NA	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.305259214	sgMsh2	cell line
chr9	73034488	73034488	A	G	ENSMUST00000184035.7	1	ENSMUSG00000079469	missense	V/A	163	Pigb	ENSMUST00000184035.7:c.488T>C	ENSMUSP00000139269.1:p.Val163Ala	H-2-Kb	9	8	4	AQWAFLCQL	AQWVFLCQL	NetMHCpan	121.2	201.9	1.666	264	0.068	251.33	235.604	0.937	96.87	133.47	201.9	121.2	284.5181656	449.8937915	269.3084622	369.1900603	M6_p20	1.471428571	1.471428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.067	264	0	0	NA	9qD	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.314651805	sgMsh2	cell line
chr9	39795557	39795557	CT	C	ENSMUST00000213266.1	2	ENSMUSG00000094254	FS	F/X	61	Olfr969	ENSMUST00000213266.1:c.186del	ENSMUSP00000149551.1:p.Leu63SerfsTer21	H-2-Kb	9	7	7	TPMYFFSAV	TPMYFFLSS	NetMHC	139.15	5874.91	42.22	501	0.18	398.204	2540.476	6.38	5874.91	139.15	2912	226.1	1349.304597	570.3087043	2168.952295	671.8154697	M6_p20	1.628571429	1.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.178	501	0	0	NA	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.835940616	sgMsh2	cell line
chr9	91364112	91364112	GA	G	ENSMUST00000034927.12	1	ENSMUSG00000032368	FS	F/X	302	Zic1	ENSMUST00000034927.12:c.906del	ENSMUSP00000034927.6:p.Cys304AlafsTer78	H-2-Kb	9	16	0	LAAARFSRV	NA	NetMHC	139.71	NA	NA	158	0.127	245.072	NA	NA	NA	139.71	NA	284.4	NA	250.6744092	NA	239.4693856	M6_p20	0.114285714	0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.139	158	0	0	NA	9qE3.2	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.652785087	sgMsh2	cell line
chr9	91364112	91364112	GA	G	ENSMUST00000034927.12	1	ENSMUSG00000032368	FS	F/X	302	Zic1	ENSMUST00000034927.12:c.906del	ENSMUSP00000034927.6:p.Cys304AlafsTer78	H-2-Kb	9	77	0	ISPTRTPAL	NA	NetMHCpan	77.4	NA	NA	158	0.127	189.365	NA	NA	NA	156.27	NA	77.4	NA	244.4049514	NA	222.4590099	M6_p20	-0.5	-0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.139	158	0	0	NA	9qE3.2	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.652785087	sgMsh2	cell line
chr9	58908457	58908457	T	C	ENSMUST00000068664.6	1	ENSMUSG00000032340	missense	N/S	845	Neo1	ENSMUST00000068664.6:c.2534A>G	ENSMUSP00000063656.5:p.Asn845Ser	H-2-Kb	9	4	8	ITLKAFNSV	ITLKAFNNV	NetMHCpan	158.6	92	0.58	214	0.168	352.943	280.466	0.795	48.67	159.99	92	158.6	468.9321403	545.8961105	537.3410257	604.2963902	M6_p20	0.628571429	0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.176	214	0	0	NA	9qB	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.826548024	sgMsh2	cell line
chr9	44106252	44106252	A	G	ENSMUST00000034654.8	1	ENSMUSG00000034739	missense	S/G	514	Mfrp	ENSMUST00000034654.8:c.1540A>G	ENSMUSP00000034654.7:p.Ser514Gly	H-2-Kb	9	4	8	RGYKSLTGL	RGYKSLTSL	NetMHC	175.39	239.04	1.363	178	0.096	399.879	468.725	1.172	239.04	175.39	160.8	177.3	698.4092778	622.4579241	703.4771574	692.2293355	M6_p20	0.071428571	0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.102	178	0	0	NA	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.479022151	sgMsh2	cell line
chr9	39470583	39470583	A	C	ENSMUST00000220176.1	5	ENSMUSG00000063176	missense	L/V	48	Olfr955	ENSMUST00000220176.1:c.142T>G	ENSMUSP00000151246.1:p.Leu48Val	H-2-Kb	9	10	2	VVILISSQL	VLILISSQL	NetMHC	181.26	873.32	4.818	340	0.206	223.649	857.6	3.835	873.32	181.26	544.2	189.6	908.050496	257.6973782	841.8796271	285.9235978	M6_p20	1.642857143	2.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	340	0	0	NA	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.939259119	sgMsh2	cell line
chr9	39873961	39873961	TA	T	ENSMUST00000215303.2	2	ENSMUSG00000094449	FS	K/X	229	Olfr972	ENSMUST00000215303.2:c.687del	ENSMUSP00000150389.1:p.Lys229AsnfsTer57	H-2-Kb	9	54	0	KCPLYFIPL	NA	NetMHCpan	54.1	NA	NA	338	0.183	209.432	NA	NA	NA	181.59	NA	54.1	NA	297.2418804	NA	237.2739171	M6_p20	1.485714286	1.485714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.18	338	0	0	NA	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.845333207	sgMsh2	cell line
chr9	39873961	39873961	TA	T	ENSMUST00000215303.2	2	ENSMUSG00000094449	FS	K/X	229	Olfr972	ENSMUST00000215303.2:c.687del	ENSMUSP00000150389.1:p.Lys229AsnfsTer57	H-2-Kb	9	23	0	AAHTYQLLL	NA	NetMHCpan	152.4	NA	NA	338	0.183	271.062	NA	NA	NA	184.76	NA	152.4	NA	357.3633412	NA	360.7862685	M6_p20	0.385714286	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.18	338	0	0	NA	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.845333207	sgMsh2	cell line
chr9	53490136	53490136	T	C	ENSMUST00000232179.1	NA	ENSMUSG00000034218	missense	T/A	1478	Atm	ENSMUST00000232179.1:c.4432A>G	ENSMUSP00000156344.1:p.Thr1478Ala	H-2-Kb	9	8	4	VIYALIHYI	VIYTLIHYI	NetMHCpan	83.8	67.5	0.805	99	0.152	235.155	203.232	0.864	168.72	204.17	67.5	83.8	237.7442379	266.1399065	241.6851686	287.9055255	M6_p20	1.257142857	2.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.158	99	0	0	NA	9qA5.3	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.742014704	sgMsh2	cell line
chr9	83847153	83847153	T	A	ENSMUST00000070326.13	1	ENSMUSG00000038379	missense	L/M	330	Ttk	ENSMUST00000070326.13:c.988T>A	ENSMUSP00000064839.7:p.Leu330Met	H-2-Kb	9	8	4	TIYMKDSLV	TIYLKDSLV	SMMPMBEC	175.085	170.706	0.975	231	0.221	199.929	188.083	0.941	205.46	216.58	1000.8	778.6	152.0932709	183.2778578	170.7064772	175.0854271	M6_p20	0.057142857	0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.232	231	0	0	NA	9qE2	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr9	73012712	73012712	A	C	ENSMUST00000085350.10	1	ENSMUSG00000034563	missense	K/N	536	Ccpg1	ENSMUST00000085350.10:c.1608A>C	ENSMUSP00000082458.4:p.Lys536Asn	H-2-Kb	9	5	7	STFRHFNDT	STFRHFKDT	NetMHC	253.98	561.83	2.212	34	0.265	303.15	536.715	1.77	561.83	253.98	511.6	324.3	642.8505207	354.0870144	460.5215948	282.000579	M6_p20	-1.4	-1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.23	34	0	0	NA	9qD	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chr9	87707833	87707833	A	T	ENSMUST00000034991.7	1	ENSMUSG00000032419	missense	Y/N	351	Tbx18	ENSMUST00000034991.7:c.1051T>A	ENSMUSP00000034991.7:p.Tyr351Asn	H-2-Kb	9	10	2	SNAFWRPSL	SYAFWRPSL	NetMHCpan	127.5	399.5	3.133	143	0.112	289.697	603.78	2.084	646.37	260.16	399.5	127.5	561.1900987	319.2346324	673.3641643	385.7003207	M6_p20	0.085714286	0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.122	143	0	0	NA	9qE3.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.572948062	sgMsh2	cell line
chr9	39873961	39873961	TA	T	ENSMUST00000215303.2	2	ENSMUSG00000094449	FS	K/X	229	Olfr972	ENSMUST00000215303.2:c.687del	ENSMUSP00000150389.1:p.Lys229AsnfsTer57	H-2-Kb	9	5	7	ASILQINPL	ASILQIKST	NetMHCpan	248.1	11342.7	45.718	338	0.183	319.911	8922.822	27.892	15545.63	284.1	11342.7	248.1	6502.943789	355.7214058	5770.985724	411.386466	M6_p20	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;Vardict	3	0.18	338	0	0	NA	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.845333207	sgMsh2	cell line
chr9	95907371	95907371	T	C	ENSMUST00000215311.1	5	ENSMUSG00000032409	missense	Y/H	1527	Atr	ENSMUST00000215311.1:c.4579T>C	ENSMUSP00000149953.1:p.Tyr1527His	H-2-Kb	9	8	4	VTIHLLPHI	VTIYLLPHI	NetMHCpan	224.9	152.9	0.68	513	0.082	368.019	265.023	0.72	198.83	333.09	152.9	224.9	331.2150024	442.7004873	338.259498	402.9489236	M6_p20	1.228571429	1.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.074	513	0	0	NA	9qE3.3	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.347525874	sgMsh2	cell line
chr9	59324811	59324811	A	G	ENSMUST00000026265.7	1	ENSMUSG00000025235	missense	V/A	362	Bbs4	ENSMUST00000026265.7:c.1085T>C	ENSMUSP00000026265.6:p.Val362Ala	H-2-Kb	9	8	4	RAYAEAVRL	RAYVEAVRL	NetMHCpan	175.4	120.3	0.686	170	0.065	497.9	316.494	0.636	232.02	361.77	120.3	175.4	400.9682638	634.0302809	528.7495369	724.853099	M6_p20	0.328571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.077	170	0	0	NA	9qB	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.361614761	sgMsh2	cell line
chrX	89754344	89754344	C	T	ENSMUST00000113958.1	1	ENSMUSG00000079513	missense	A/V	594	4932429P05Rik	ENSMUST00000113958.1:c.1781C>T	ENSMUSP00000109591.1:p.Ala594Val	H-2-Db	9	5	7	YNMLNSVII	YNMLNSAII	NetMHCpan	19.4	16.2	0.835	38	0.132	119.584	101.86	0.852	35.62	38.92	16.2	19.4	181.3927813	231.0042659	168.100885	200.2488359	M6_p20	2.085714286	2.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.184	38	0	0	NA	XqC1	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	sgMsh2	cell line
chr9	100855832	100855832	A	T	ENSMUST00000129269.7	1	ENSMUSG00000037286	missense	E/V	414	Stag1	ENSMUST00000129269.7:c.1241A>T	ENSMUSP00000116205.1:p.Glu414Val	H-2-Db	9	3	9	EALSNEDCV	EALSNEDCE	NetMHC	162.17	20754.53	127.98	433	0.076	364.555	11513.819	31.583	20754.53	162.17	29954.3	951.5	2273.107631	411.7370988	1269.316718	317.3730167	M6_p20	-0.114285714	-0.114285714	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.091	433	0	0	NA	9qE3.3	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.427362899	sgMsh2	cell line
chrX	133588496	133588496	A	G	ENSMUST00000149154.7	1	ENSMUSG00000051323	missense	M/T	977	Pcdh19	ENSMUST00000149154.7:c.2930T>C	ENSMUSP00000116886.1:p.Met977Thr	H-2-Db	9	5	7	WMPRNPTPT	WMPRNPMPT	NetMHC	233.44	1377.14	5.899	62	0.145	363.988	1119.682	3.076	1377.14	233.44	3001.1	2034.1	862.223787	394.1123099	717.0839465	333.8643134	M6_p20	-2.028571429	-1.557142857	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.162	62	0	0	NA	XqE3	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	sgMsh2	cell line
chrX	13665387	13665387	T	C	ENSMUST00000053659.1	1	ENSMUSG00000047678	missense	V/A	58	Gpr82	ENSMUST00000053659.1:c.173T>C	ENSMUSP00000062535.1:p.Val58Ala	H-2-Kb	8	8	4	ANLATANL	ANLVTANL	NetMHC	110.98	65.42	0.589	159	0.239	127.103	105.176	0.827	65.42	110.98	97.7	151.4	116.611129	121.5458122	112.6522836	132.6600022	M6_p20	0.5	0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.262	159	0	0	NA	XqA1.1	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	sgMsh2	cell line
chrX	7166122	7166122	C	T	ENSMUST00000115746.7	5	ENSMUSG00000004317	missense	V/I	339	Clcn5	ENSMUST00000115746.7:c.1015G>A	ENSMUSP00000111412.1:p.Val339Ile	H-2-Kb	8	11	1	ISYYFPLK	VSYYFPLK	SMMPMBEC	30.956	31.75	1.026	52	0.096	80.598	70.351	0.873	103.4	121.41	276.1	261.1	37.30267702	39.78689062	31.74972734	30.95565516	M6_p20	-0.328571429	0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.125	52	0	0	NA	XqA1.1	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	sgMsh2	cell line
chr9	103343982	103343982	T	C	ENSMUST00000035164.9	1	ENSMUSG00000032555	missense	S/P	1269	Topbp1	ENSMUST00000035164.9:c.3805T>C	ENSMUSP00000035164.3:p.Ser1269Pro	H-2-Kb	8	6	6	YVFQMPSL	YVFQMSSL	NetMHCpan	89.7	53.6	0.598	87	0.241	134.991	77.001	0.57	65.95	140.12	53.6	89.7	95.66211974	137.3219621	88.05215715	132.6600022	M6_p20	0.971428571	0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.235	87	0	0	NA	9qF1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chrX	106930585	106930585	G	A	ENSMUST00000060576.7	1	ENSMUSG00000049929	missense	S/N	125	Lpar4	ENSMUST00000060576.7:c.374G>A	ENSMUSP00000053986.7:p.Ser125Asn	H-2-Kb	8	5	7	LTNIYGNM	LTNIYGSM	SMMPMBEC	202.647	463.17	2.286	147	0.299	240.886	656.883	2.727	1047.53	265.63	783.2	426.7	530.5667136	216.1424152	463.16955	202.6469166	M6_p20	-0.428571429	-0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.326	147	0	0	NA	XqD	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	sgMsh2	cell line
chrX	8273656	8273656	T	A	ENSMUST00000033512.10	1	ENSMUSG00000031170	missense	I/N	140	Slc38a5	ENSMUST00000033512.10:c.419T>A	ENSMUSP00000033512.4:p.Ile140Asn	H-2-Kb	8	10	2	INICLHNV	IIICLHNV	NetMHCpan	217.8	441.4	2.027	115	0.357	286.068	322.017	1.126	373.8	423.14	441.4	217.8	223.2235446	248.7367755	270.2340064	323.3999884	M6_p20	0.685714286	0.728571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.38	115	0	0	NA	XqA1.1	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	sgMsh2	cell line
chrX	94197377	94197377	G	A	ENSMUST00000050328.14	1	ENSMUSG00000035150	missense	P/S	365	Eif2s3x	ENSMUST00000050328.14:c.1093C>T	ENSMUSP00000059395.8:p.Pro365Ser	H-2-Kb	8	10	2	LSEIFTEL	LPEIFTEL	SMMPMBEC	207.367	1491.901	7.194	98	0.296	351.034	2982.81	8.497	13083.12	456.6	3863.1	385.3	2102.519343	316.7670499	1491.900983	207.3671696	M6_p20	0.371428571	0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.301	98	0	0	NA	XqC3	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	sgMsh2	cell line
chr9	108052065	108052065	A	G	ENSMUST00000162355.7	1	ENSMUSG00000041528	missense	V/A	1271	Rnf123	ENSMUST00000162355.7:c.3812T>C	ENSMUSP00000125745.1:p.Val1271Ala	H-2-Kb	8	8	4	ISAAFQPC	ISAVFQPC	SMM	176.092	168.943	0.959	171	0.099	417.672	294.935	0.706	357.2	561.35	396.1	585.7	168.9429215	176.0921516	232.6697911	273.9933359	M6_p20	0.428571429	0.714285714	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.11	171	0	0	NA	9qF1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.516592515	sgMsh2	cell line
chr9	124028825	124028825	T	C	ENSMUST00000039171.8	1	ENSMUSG00000035448	missense	Y/H	66	Ccr3	ENSMUST00000039171.8:c.196T>C	ENSMUSP00000039107.7:p.Tyr66His	H-2-Kb	8	7	5	ILIKHRKL	ILIKYRKL	SMMPMBEC	326.392	75.464	0.231	145	0.221	400.409	61.132	0.153	42.64	603.41	46.8	412.9	100.1705365	387.9180607	75.46403103	326.3923717	M6_p20	-0.485714286	-0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.235	145	0	0	NA	9qF4	chr9-119511849-124127055	4	3	1	0.93	4.367554902	NA	1	1	sgMsh2	cell line
chrX	20644940	20644940	A	T	ENSMUST00000115374.7	1	ENSMUSG00000031060	missense	Q/L	267	Rbm10	ENSMUST00000115374.7:c.800A>T	ENSMUSP00000111032.1:p.Gln267Leu	H-2-Kb	8	9	3	LSLGLLPL	LSQGLLPL	SMMPMBEC	348.931	945.671	2.71	80	0.438	402.308	1359.735	3.38	2509.64	710.55	1773.8	422.9	913.5661511	381.7156799	945.6708451	348.9313575	M6_p20	1.771428571	1.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.423	80	0	0	NA	XqA1.3	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	sgMsh2	cell line
chr9	105418083	105418083	CA	C	ENSMUST00000085133.12	1	ENSMUSG00000032570	FS	F/X	851	Atp2c1	ENSMUST00000085133.12:c.2553del	ENSMUSP00000082220.6:p.Phe851LeufsTer7	H-2-Kb	8	4	8	TFTCFVFL	TFTCFVFF	SMM	146.467	2380.894	16.255	311	0.145	393.785	3114.872	7.91	4770.82	1201.85	3759.5	590.9	2380.893668	146.4670721	2470.244836	196.6708524	M6_p20	2.6	2.6	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.144	311	0	0	NA	9qF1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.676266565	sgMsh2	cell line
chr9	105418083	105418083	CA	C	ENSMUST00000085133.12	1	ENSMUSG00000032570	FS	F/X	851	Atp2c1	ENSMUST00000085133.12:c.2553del	ENSMUSP00000082220.6:p.Phe851LeufsTer7	H-2-Kb	9	3	9	MTFTCFVFL	MTFTCFVFF	NetMHC	62.13	426.85	6.87	311	0.145	106.964	362.117	3.385	426.85	62.13	405	69.3	319.2346324	189.282298	250.1785091	144.6272072	M6_p20	2.6	2.6	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.144	311	0	0	NA	9qF1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.676266565	sgMsh2	cell line
chrX	86747655	86747655	G	A	ENSMUST00000113966.7	5	ENSMUSG00000052372	missense	P/S	560	Il1rapl1	ENSMUST00000113966.7:c.1678C>T	ENSMUSP00000109599.1:p.Pro560Ser	H-2-Kb	9	10	2	MSFKRIEPI	MPFKRIEPI	NetMHCpan	58.3	2180.6	37.403	75	0.227	177.366	2262.711	12.757	4631.31	173.91	2180.6	58.3	2344.822647	233.4049166	1946.480243	180.8214719	M6_p20	-0.242857143	-0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.244	75	0	0	NA	XqC1	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	sgMsh2	cell line
chrX	48263598	48263598	T	A	ENSMUST00000080713.4	1	ENSMUSG00000063785	missense	F/Y	168	Utp14a	ENSMUST00000080713.4:c.503T>A	ENSMUSP00000079538.4:p.Phe168Tyr	H-2-Kb	9	9	3	SSYAPMEHV	SSFAPMEHV	NetMHC	205.1	379.33	1.849	61	0.361	345.153	552.142	1.6	379.33	205.1	420.2	264.6	684.0848933	425.7062242	755.5270188	499.1717511	M6_p20	-0.242857143	-0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.375	61	0	0	NA	XqA5	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	sgMsh2	cell line
chrX	7166122	7166122	C	T	ENSMUST00000115746.7	5	ENSMUSG00000004317	missense	V/I	339	Clcn5	ENSMUST00000115746.7:c.1015G>A	ENSMUSP00000111412.1:p.Val339Ile	H-2-Kb	9	11	1	ISYYFPLKT	VSYYFPLKT	NetMHCpan	74.4	75.4	1.013	52	0.096	183.217	130.859	0.714	174.01	226.18	75.4	74.4	134.001605	197.2922383	127.7173798	169.1414308	M6_p20	-0.314285714	0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.125	52	0	0	NA	XqA1.1	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	sgMsh2	cell line
chrX	9849913	9849913	T	C	ENSMUST00000057113.2	NA	ENSMUSG00000048994	missense	S/P	55	H2al3	ENSMUST00000057113.2:c.163T>C	ENSMUSP00000052025.1:p.Ser55Pro	H-2-Kb	9	6	6	LNYVTPSIL	LNYVTSSIL	SMM	217.325	118.334	0.545	189	0.169	286.985	138.425	0.482	151.65	320.37	125.2	253.6	118.334124	217.325156	242.8007366	383.9281887	M6_p20	1.157142857	1.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.172	189	0	0	NA	XqA1.1	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	sgMsh2	cell line
chr9	108563479	108563479	A	G	ENSMUST00000081111.13	1	ENSMUSG00000062867	missense	K/R	293	Impdh2	ENSMUST00000081111.13:c.878A>G	ENSMUSP00000079888.8:p.Lys293Arg	H-2-Kb	9	7	5	YIKERYPSL	YIKEKYPSL	SMMPMBEC	191.977	301.474	1.57	290	0.11	279.752	401.364	1.435	594.46	397.74	453.5	326.1	349.2287585	233.4049166	301.4740949	191.9773533	M6_p20	-1.685714286	-1.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.121	290	0	0	NA	9qF2	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.568251767	sgMsh2	cell line
chrX	101673545	101673545	GA	G	ENSMUST00000044475.4	1	ENSMUSG00000034160	FS	K/X	757	Ogt	ENSMUST00000044475.4:c.2271del	ENSMUSP00000045409.4:p.Lys757AsnfsTer23	H-2-Kb	9	22	0	VTQLLICPL	NA	NetMHCpan	324.4	NA	NA	62	0.177	478.008	NA	NA	NA	401.25	NA	324.4	NA	554.7662088	NA	602.9065471	M6_p20	1.9	2.085714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.214	62	0	0	NA	XqD	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	sgMsh2	cell line
chrX	7166122	7166122	C	T	ENSMUST00000115746.7	5	ENSMUSG00000004317	missense	V/I	339	Clcn5	ENSMUST00000115746.7:c.1015G>A	ENSMUSP00000111412.1:p.Val339Ile	H-2-Kb	10	11	1	ISYYFPLKTL	VSYYFPLKTL	NetMHCpan	13.3	13.1	0.985	52	0.096	243.414	260.719	1.071	16.94	20.32	13.1	13.3	847.8714271	832.3960295	504.4986402	466.5089713	M6_p20	0.414285714	0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.125	52	0	0	NA	XqA1.1	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	sgMsh2	cell line
chrX	167306156	167306156	A	G	ENSMUST00000112161.7	1	ENSMUSG00000044583	missense	M/T	778	Tlr7	ENSMUST00000112161.7:c.2333T>C	ENSMUSP00000107787.1:p.Met778Thr	H-2-Db	9	4	8	NVLNNLETL	NVLNNLEML	NetMHCpan	106.4	677.9	6.371	185	0.308	138.652	575.836	4.153	938.34	167.72	677.9	106.4	433.1317299	133.2355135	473.7726652	144.0688203	M6_p20	0.028571429	0.085714286	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.316	185	0	0	NA	XqF5	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	sgMsh2	cell line
chrX	153392828	153392828	A	T	ENSMUST00000112574.8	1	ENSMUSG00000041649	missense	D/V	343	Klf8	ENSMUST00000112574.8:c.1028A>T	ENSMUSP00000108193.2:p.Asp343Val	H-2-Kb	9	5	7	RSFSRSVHL	RSFSRSDHL	NetMHCpan	26.9	121.5	4.517	37	0.27	59.407	161.552	2.719	166.75	32.89	121.5	26.9	156.3543614	85.92311238	215.8986864	112.2664526	M6_p20	0.214285714	0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.261	37	0	0	NA	XqF3	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	sgMsh2	cell line
chrX	135613266	135613266	C	T	ENSMUST00000113159.7	5	ENSMUSG00000031411	missense	E/K	425	Prame	ENSMUST00000113159.7:c.1273G>A	ENSMUSP00000108784.1:p.Glu425Lys	H-2-Kb	9	11	1	KQWQFHGRL	EQWQFHGRL	NetMHC	34.51	455.42	13.197	151	0.331	226.444	653.524	2.886	455.42	34.51	390.2	77.7	1300.498932	478.7513372	851.6281337	375.1889162	M6_p20	-0.842857143	-0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.356	151	0	0	NA	XqF1	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	sgMsh2	cell line
chr1	92888774	92888774	G	A	ENSMUST00000160548.7	2	ENSMUSG00000034212	missense	P/L	206	Ankmy1	ENSMUST00000160548.7:c.617C>T	ENSMUSP00000123787.1:p.Pro206Leu	H-2-Db	9	5	7	FSLVNYLEF	FSLVNYPEF	NetMHC	9	11.11	1.234	108	0.222	26.2	23.688	0.904	11.11	9	28.6	33.9	22.6266365	24.24487783	24.74970347	28.15593799	M6	0.9	1.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.205	108	0	0	NA	1qD	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr1	26683454	26683454	T	A	ENSMUST00000097801.3	1	ENSMUSG00000073722	missense	T/S	882	4931408C20Rik	ENSMUST00000097801.3:c.2644A>T	ENSMUSP00000095410.3:p.Thr882Ser	H-2-Db	9	11	1	SAVELQVLI	TAVELQVLI	SMM	277.089	572.295	2.065	193	0.135	359.953	1249.888	3.472	1927.48	412.6	2926.1	1007.5	572.2950638	277.089456	515.9053125	307.3052643	M6	1.928571429	1.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe	3	0.14	193	0	0	NA	1qA5	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.751066585	sgMsh2	cell line
chr1	92888774	92888774	G	A	ENSMUST00000160548.7	2	ENSMUSG00000034212	missense	P/L	206	Ankmy1	ENSMUST00000160548.7:c.617C>T	ENSMUSP00000123787.1:p.Pro206Leu	H-2-Db	10	5	7	FSLVNYLEFL	FSLVNYPEFL	NetMHC	7.54	7.11	0.943	108	0.222	369.027	511.456	1.386	7.11	7.54	12.1	13.2	1023.882217	724.853099	1010.811094	725.5544332	M6	0.9	1.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.205	108	0	0	NA	1qD	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr1	4352795	4352795	T	C	ENSMUST00000027032.5	1	ENSMUSG00000025900	missense	M/V	11	Rp1	ENSMUST00000027032.5:c.31A>G	ENSMUSP00000027032.4:p.Met11Val	H-2-Kb	8	7	5	TSFSVIHL	TSFSMIHL	NetMHC	20.73	12.72	0.614	120	0.192	35.302	20.485	0.58	12.72	20.73	14.5	31	29.90473787	40.43337559	26.4691503	39.60408646	M6	1.5	1.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.189	120	0	0	NA	1qA1	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr1	55078678	55078678	T	A	ENSMUST00000027123.14	1	ENSMUSG00000025980	missense	I/F	474	Hspd1	ENSMUST00000027123.14:c.1420A>T	ENSMUSP00000027123.8:p.Ile474Phe	H-2-Kb	8	7	5	RALKFPAM	RALKIPAM	NetMHC	57.84	5027.16	86.915	123	0.195	145.525	5762.283	39.597	5027.16	57.84	1724.8	71.9	6914.16915	219.1492557	6497.405923	259.8603386	M6	0.942857143	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.198	123	264	56	0.212121212	1qC1.2	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr1	25117350	25117350	C	T	ENSMUST00000151309.7	1	ENSMUSG00000033569	missense	V/I	1043	Adgrb3	ENSMUST00000151309.7:c.3127G>A	ENSMUSP00000116231.1:p.Val1043Ile	H-2-Kb	8	8	4	GILIFNKL	GILVFNKL	SMMPMBEC	210.252	176.905	0.841	161	0.205	288.696	261.073	0.904	271	383.34	268.2	301.5	253.9451951	275.892567	176.9049561	210.2519343	M6	1.714285714	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.204	161	0	0	NA	1qA5	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr1	81241326	81241326	A	G	ENSMUST00000068275.11	1	ENSMUSG00000054976	missense	I/M	354	Nyap2	ENSMUST00000068275.11:c.1062A>G	ENSMUSP00000065468.5:p.Ile354Met	H-2-Kb	8	11	1	MPPPFPNL	IPPPFPNL	SMM	119.878	59.943	0.5	116	0.207	336.945	97.636	0.29	100.05	467	442.6	658.9	59.94321055	119.8781411	95.22259222	206.8902384	M6	-0.471428571	-0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.217	116	0	0	NA	1qC5	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr1	4347311	4347311	A	G	ENSMUST00000027032.5	1	ENSMUSG00000025900	missense	C/R	1193	Rp1	ENSMUST00000027032.5:c.3577T>C	ENSMUSP00000027032.4:p.Cys1193Arg	H-2-Kb	8	9	3	VNRTASSL	VNCTASSL	SMM	211.709	249.31	1.178	241	0.141	418.183	628.434	1.503	1220.97	528.94	969.3	728.2	249.310173	211.7093311	287.5676312	307.4255792	M6	-0.671428571	-0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.144	241	0	0	NA	1qA1	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.772525631	sgMsh2	cell line
chr1	92888774	92888774	G	A	ENSMUST00000160548.7	2	ENSMUSG00000034212	missense	P/L	206	Ankmy1	ENSMUST00000160548.7:c.617C>T	ENSMUSP00000123787.1:p.Pro206Leu	H-2-Kb	9	8	4	VNYLEFLAF	VNYPEFLAF	SMM	35.003	58.899	1.683	108	0.222	45.511	69.006	1.516	92.65	58.66	53.7	42.8	58.89928191	35.00338139	79.11339102	48.22253089	M6	1.457142857	1.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.205	108	0	0	NA	1qD	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr1	92888774	92888774	G	A	ENSMUST00000160548.7	2	ENSMUSG00000034212	missense	P/L	206	Ankmy1	ENSMUST00000160548.7:c.617C>T	ENSMUSP00000123787.1:p.Pro206Leu	H-2-Kb	9	3	9	SGFSLVNYL	SGFSLVNYP	NetMHC	71.49	16264.67	227.51	108	0.222	199.561	5858.469	29.357	16264.67	71.49	8516.2	74.7	1496.614677	324.4217779	3200.737072	434.7604204	M6	1.285714286	1.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.205	108	0	0	NA	1qD	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr1	25117350	25117350	C	T	ENSMUST00000151309.7	1	ENSMUSG00000033569	missense	V/I	1043	Adgrb3	ENSMUST00000151309.7:c.3127G>A	ENSMUSP00000116231.1:p.Val1043Ile	H-2-Kb	9	7	5	IGILIFNKL	IGILVFNKL	NetMHCpan	46.9	53.6	1.143	161	0.205	218.729	255.566	1.168	109.11	103.07	53.6	46.9	553.4902819	448.8590645	402.0221668	334.3874735	M6	1.714285714	2.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.204	161	0	0	NA	1qA5	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr1	88277396	88277396	A	G	ENSMUST00000054674.14	1	ENSMUSG00000044783	missense	L/S	25	Hjurp	ENSMUST00000054674.14:c.74T>C	ENSMUSP00000054263.8:p.Leu25Ser	H-2-Kb	9	4	8	SSSRFQTSM	SSSRFQTLM	NetMHC	103.3	91.09	0.882	177	0.028	439.538	351.009	0.799	91.09	103.3	205.3	199.7	496.7181164	679.3756861	624.0939895	766.0374466	M6	-0.8	-0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.036	177	86	2	0.023255814	1qD	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.193131408	sgMsh2	cell line
chr1	26687339	26687339	C	T	ENSMUST00000097801.3	1	ENSMUSG00000073722	missense	A/T	30	4931408C20Rik	ENSMUST00000097801.3:c.88G>A	ENSMUSP00000095410.3:p.Ala30Thr	H-2-Kb	9	8	4	ISFTIMCGV	ISFAIMCGV	NetMHCpan	74.6	91	1.22	551	0.025	250.461	298.272	1.191	128.54	108.05	91	74.6	533.469998	476.5516746	468.0044688	392.8710251	M6	2.114285714	2.114285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.024	551	0	0	NA	1qA5	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.128754272	sgMsh2	cell line
chr1	5916369	5916369	A	G	ENSMUST00000044180.4	NA	ENSMUSG00000033774	missense	Y/H	309	Npbwr1	ENSMUST00000044180.4:c.925T>C	ENSMUSP00000046233.4:p.Tyr309His	H-2-Kb	9	6	6	LNPFLHAFL	LNPFLYAFL	NetMHCpan	98	28.5	0.291	120	0.267	405.724	118.863	0.293	40.37	181.58	28.5	98	212.3782315	743.2073569	197.3558481	629.8686601	M6	1.457142857	1.457142857	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.269	120	0	0	NA	1qA1	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr1	62344084	62344084	A	C	ENSMUST00000075374.9	5	ENSMUSG00000052062	missense	E/A	779	Pard3b	ENSMUST00000075374.9:c.2336A>C	ENSMUSP00000074837.3:p.Glu779Ala	H-2-Kb	9	9	3	CNASFRAAI	CNESFRAAI	NetMHCpan	230.4	1751.1	7.6	53	0.113	372.631	1474.805	3.958	925.35	239.31	1751.1	230.4	1300.498932	505.9527957	1649.111423	995.9785837	M6	1.057142857	1.057142857	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.129	53	4	0	0	1qC2	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.692054211	sgMsh2	cell line
chr1	75315970	75315970	G	A	ENSMUST00000185797.6	1	ENSMUSG00000026209	missense	T/I	135	Dnpep	ENSMUST00000185797.6:c.404C>T	ENSMUSP00000140864.1:p.Thr135Ile	H-2-Kb	9	4	8	TWFDRDLIL	TWFDRDLTL	SMM	114.844	102.828	0.895	150	0.193	213.694	153.769	0.72	190.52	289.27	390.9	776.8	102.8276712	114.8444468	117.0172803	138.1179106	M6	0.485714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.197	150	278	57	0.205035971	1qC4	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr1	88277237	88277238	TT	CC	ENSMUST00000054674.14	1	ENSMUSG00000044783	missense	LT/LA	48-49	Hjurp	ENSMUST00000054674.14:c.144_145delinsGG	ENSMUSP00000054263.8:p.Thr49Ala	H-2-Kb	9	11	2	LAYETPQGL	LTYETPQGL	NetMHC	290.54	361.36	1.244	349	0.037	443.209	518.341	1.17	361.36	290.54	564.5	588.3	472.1826226	342.8546153	701.8592048	543.5631415	M6	-1.028571429	-0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.044	349	121	3	0.024793388	1qD	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.236049498	sgMsh2	cell line
chr1	92888774	92888774	G	A	ENSMUST00000160548.7	2	ENSMUSG00000034212	missense	P/L	206	Ankmy1	ENSMUST00000160548.7:c.617C>T	ENSMUSP00000123787.1:p.Pro206Leu	H-2-Kb	9	5	7	FSLVNYLEF	FSLVNYPEF	SMM	257.105	213.85	0.832	108	0.222	306.405	239.375	0.781	213.83	294.94	264.9	404.6	213.850367	257.1046906	273.0549161	317.8703353	M6	0.9	1.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.205	108	0	0	NA	1qD	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr1	9745771	9745771	A	G	ENSMUST00000057438.6	1	ENSMUSG00000045210	missense	F/L	796	Vcpip1	ENSMUST00000057438.6:c.2386T>C	ENSMUSP00000051248.6:p.Phe796Leu	H-2-Kb	9	3	9	VTLKPSTTL	VTLKPSTTF	NetMHC	417.94	963.6	2.306	258	0.039	497.577	1098.707	2.208	963.6	417.94	1895.1	515.3	809.3008565	479.854973	1233.81487	713.2634994	M6	-0.014285714	0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.046	258	97	4	0.041237113	1qA2	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.246779021	sgMsh2	cell line
chr1	165539831	165539831	A	G	ENSMUST00000027852.14	1	ENSMUSG00000026567	missense	T/A	557	Adcy10	ENSMUST00000027852.14:c.1669A>G	ENSMUSP00000027852.8:p.Thr557Ala	H-2-Db	9	4	8	SFHQNFYAI	SFHQNFYTI	SMM	105.104	62.176	0.592	178	0.112	167.108	96.911	0.58	73.99	141.21	379.5	647.3	62.17560216	105.1041828	119.8312253	193.0056399	M6	-0.342857143	-0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.133	178	0	0	NA	1qH2.3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.713513256	sgMsh2	cell line
chr1	153807711	153807711	T	C	ENSMUST00000124558.9	5	ENSMUSG00000042641	missense	K/E	698	Rgsl1	ENSMUST00000124558.9:c.2092A>G	ENSMUSP00000135642.1:p.Lys698Glu	H-2-Db	9	4	8	TSLENITET	TSLENITKT	SMMPMBEC	239.095	836.7	3.499	123	0.049	329.155	1229.334	3.735	1457.24	347.41	2354.2	595	1001.428622	310.8994831	836.7004451	239.0947279	M6	-0.514285714	-0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.07	123	0	0	NA	1qG3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.375533293	sgMsh2	cell line
chr1	181054895	181054895	TA	T	ENSMUST00000036819.6	1	ENSMUSG00000038768	FS	Y/X	74	9130409I23Rik	ENSMUST00000036819.6:c.221del	ENSMUSP00000042889.6:p.Tyr74LeufsTer11	H-2-Kb	8	6	6	VIFCALYL	VIFCAYVF	SMM	42.047	997.103	23.714	198	0.222	53.689	801.466	14.928	605.83	70.34	352.4	50	997.1029474	42.04748265	1126.522836	57.37728575	M6	2.557142857	2.614285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.225	198	0	0	NA	1qH4	chr1-176213282-195166209	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr1	165551108	165551108	T	C	ENSMUST00000027852.14	1	ENSMUSG00000026567	missense	M/T	822	Adcy10	ENSMUST00000027852.14:c.2465T>C	ENSMUSP00000027852.8:p.Met822Thr	H-2-Kb	8	11	1	TSLSHQML	MSLSHQML	NetMHC	75.85	50.29	0.663	161	0.031	115.039	86.865	0.755	50.29	75.85	102.4	165.3	72.40023903	101.3304567	101.3304567	128.7478543	M6	0.171428571	0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.041	161	0	0	NA	1qH2.3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.219955214	sgMsh2	cell line
chr1	173203457	173203457	A	C	ENSMUST00000216603.1	5	ENSMUSG00000046643	missense	T/P	34	Olfr218	ENSMUST00000216603.1:c.100A>C	ENSMUSP00000150815.1:p.Thr34Pro	H-2-Kb	8	7	5	IVFLPLYL	IVFLTLYL	NetMHCpan	37.9	34.2	0.902	240	0.017	67.83	56.074	0.827	58.97	83.69	34.2	37.9	63.93519587	65.87793843	53.17897962	69.78145169	M6	2.214285714	2.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.023	240	0	0	NA	1qH3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.12338951	sgMsh2	cell line
chr1	172290712	172290712	T	A	ENSMUST00000085913.10	1	ENSMUSG00000007097	missense	I/F	132	Atp1a2	ENSMUST00000085913.10:c.394A>T	ENSMUSP00000083077.4:p.Ile132Phe	H-2-Kb	8	9	3	LGFVLAAV	LGIVLAAV	NetMHC	85.07	805.62	9.47	181	0.16	128.59	785.379	6.108	805.62	85.07	822.4	123.6	765.1384027	157.666708	633.4903447	133.5795574	M6	2.6	2.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.173	181	0	0	NA	1qH3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.928103709	sgMsh2	cell line
chr1	139733178	139733178	CT	C	ENSMUST00000111989.8	1	ENSMUSG00000070594	FS	R/X	591	Gm4788	ENSMUST00000111989.8:c.1771del	ENSMUSP00000107620.2:p.Arg591GlyfsTer32	H-2-Kb	8	30	0	VMMVSGYL	NA	NetMHCpan	76.9	NA	NA	235	0.162	186.839	NA	NA	NA	91.36	NA	76.9	NA	327.8989304	NA	282.3189304	M6	1.328571429	1.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.168	235	0	0	NA	1qF	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.901279903	sgMsh2	cell line
chr1	173203457	173203457	A	C	ENSMUST00000216603.1	5	ENSMUSG00000046643	missense	T/P	34	Olfr218	ENSMUST00000216603.1:c.100A>C	ENSMUSP00000150815.1:p.Thr34Pro	H-2-Kb	8	5	7	FFIVFLPL	FFIVFLTL	SMM	27.909	69.781	2.5	240	0.017	68.58	190.089	2.772	300.61	106.77	1046.7	483.3	69.78145169	27.90872523	79.56828547	30.39065077	M6	2.9	2.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.023	240	0	0	NA	1qH3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.12338951	sgMsh2	cell line
chr1	139423488	139423488	A	G	ENSMUST00000039867.9	1	ENSMUSG00000033964	missense	Y/C	113	Zbtb41	ENSMUST00000039867.9:c.338A>G	ENSMUSP00000045570.7:p.Tyr113Cys	H-2-Kb	8	9	3	SSCFHACL	SSYFHACL	SMM	69.461	5.898	0.085	225	0.022	99.305	5.649	0.057	4.17	129.15	5.4	160.4	5.89847849	69.46083504	6.978145169	69.46083504	M6	1.342857143	1.342857143	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Vardict	2	0.029	225	60	6	0.1	1qE4	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.155578078	sgMsh2	cell line
chr1	135167045	135167045	T	C	ENSMUST00000027682.8	1	ENSMUSG00000026424	missense	I/V	154	Gpr37l1	ENSMUST00000027682.8:c.460A>G	ENSMUSP00000027682.8:p.Ile154Val	H-2-Kb	8	11	1	VVWHSYYL	IVWHSYYL	NetMHCpan	50.2	54.3	1.082	152	0.178	124.72	127.484	1.022	148.38	135.33	54.3	50.2	137.0061303	128.4517425	117.9614222	120.9873599	M6	0.071428571	0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.186	152	0	0	NA	1qE4	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.997845606	sgMsh2	cell line
chr1	171641147	171641147	A	G	ENSMUST00000192195.5	1	ENSMUSG00000038179	missense	F/S	59	Slamf7	ENSMUST00000192195.5:c.176T>C	ENSMUSP00000141871.1:p.Phe59Ser	H-2-Kb	8	5	7	WTFNTFSL	WTFNTFFL	NetMHC	140.19	303.54	2.165	192	0.099	192.736	253.327	1.314	303.54	140.19	304.3	191.5	203.114066	238.6382195	178.1312026	193.9724271	M6	0.528571429	0.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.103	192	0	0	NA	1qH3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.552570416	sgMsh2	cell line
chr1	174836908	174836908	G	A	ENSMUST00000055294.3	1	ENSMUSG00000050069	missense	P/L	125	Grem2	ENSMUST00000055294.3:c.374C>T	ENSMUSP00000049640.3:p.Pro125Leu	H-2-Kb	8	4	8	QSCAFCKL	QSCAFCKP	SMM	117.961	2855.88	24.21	103	0.175	147.089	12242.245	83.23	25277.15	156.54	20913.9	503.9	2855.880296	117.9614222	3570.590129	137.6385219	M6	1.242857143	1.242857143	TRUE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.175	103	0	0	NA	1qH3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.938833232	sgMsh2	cell line
chr1	181054895	181054895	TA	T	ENSMUST00000036819.6	1	ENSMUSG00000038768	FS	Y/X	74	9130409I23Rik	ENSMUST00000036819.6:c.221del	ENSMUSP00000042889.6:p.Tyr74LeufsTer11	H-2-Kb	8	4	8	KWVIFCAL	KWVIFCAY	NetMHC	228.19	8748.78	38.34	198	0.222	228.423	10340.758	45.27	8748.78	228.19	12501.6	432.8	11932.73511	228.4230889	7323.859428	228.4230889	M6	2.671428571	2.671428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.225	198	0	0	NA	1qH4	chr1-176213282-195166209	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr1	151351713	151351713	T	C	ENSMUST00000023918.12	1	ENSMUSG00000023150	missense	Y/H	91	Ivns1abp	ENSMUST00000023918.12:c.271T>C	ENSMUSP00000023918.6:p.Tyr91His	H-2-Kb	8	5	7	VLLNYAHT	VLLNYAYT	SMMPMBEC	192.637	198.034	1.028	239	0.025	277.822	339.303	1.221	371.18	233.73	1146.3	1299.8	307.4255792	321.9141004	198.0341096	192.6371303	M6	0.1	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.034	239	411	15	0.03649635	1qG1	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.182401885	sgMsh2	cell line
chr1	173203457	173203457	A	C	ENSMUST00000216603.1	5	ENSMUSG00000046643	missense	T/P	34	Olfr218	ENSMUST00000216603.1:c.100A>C	ENSMUSP00000150815.1:p.Thr34Pro	H-2-Kb	8	8	4	VFLPLYLL	VFLTLYLL	SMM	190.871	113.695	0.596	240	0.017	286.393	189.811	0.663	226.98	326.11	223.4	258.2	113.6946424	190.8710225	156.221211	314.5864409	M6	2.157142857	2.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.023	240	0	0	NA	1qH3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.12338951	sgMsh2	cell line
chr1	154633618	154633618	A	G	ENSMUST00000187541.6	1	ENSMUSG00000004110	missense	L/P	297	Cacna1e	ENSMUST00000187541.6:c.890T>C	ENSMUSP00000140937.1:p.Leu297Pro	H-2-Kb	8	8	4	DNIPFAVL	DNILFAVL	SMM	178.131	93.485	0.525	126	0.032	412.973	165.678	0.401	220.76	608.34	374.2	572	93.48458404	178.1312026	110.5961477	253.9451951	M6	1.714285714	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.042	126	0	0	NA	1qG3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.225319976	sgMsh2	cell line
chr1	181054895	181054895	TA	T	ENSMUST00000036819.6	1	ENSMUSG00000038768	FS	Y/X	74	9130409I23Rik	ENSMUST00000036819.6:c.221del	ENSMUSP00000042889.6:p.Tyr74LeufsTer11	H-2-Kb	8	10	2	ALYLVVLL	NA	SMMPMBEC	308.845	NA	NA	198	0.222	482.538	NA	NA	NA	629.54	NA	1005.1	NA	335.5366776	NA	308.8445912	M6	3.185714286	3.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.225	198	0	0	NA	1qH4	chr1-176213282-195166209	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr1	119527237	119527237	T	C	ENSMUST00000183952.1	NA	ENSMUSG00000098923	missense	Y/H	243	Tmem185b	ENSMUST00000183952.1:c.727T>C	ENSMUSP00000139021.1:p.Tyr243His	H-2-Kb	8	11	1	HISIFIPL	YISIFIPL	SMMPMBEC	277.805	143.463	0.516	210	0.371	366.678	142.732	0.389	159.19	639.82	142	423.8	132.0504848	309.5565516	143.4630303	277.8049629	M6	2.528571429	2.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.374	210	120	28	0.233333333	1qE2.3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr1	179529275	179529275	G	T	ENSMUST00000027769.5	1	ENSMUSG00000026492	missense	P/T	365	Tfb2m	ENSMUST00000027769.5:c.1093C>A	ENSMUSP00000027769.5:p.Pro365Thr	H-2-Kb	8	10	2	YTHDFKKL	YPHDFKKL	NetMHCpan	290.1	6458.7	22.264	37	0.243	445.62	4210.443	9.448	10645.54	954.87	6458.7	290.1	1962.18522	490.6140712	1724.80499	400.6268017	M6	-1.228571429	-1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.243	37	2	1	0.5	1qH4	chr1-176213282-195166209	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr1	151351713	151351713	T	C	ENSMUST00000023918.12	1	ENSMUSG00000023150	missense	Y/H	91	Ivns1abp	ENSMUST00000023918.12:c.271T>C	ENSMUSP00000023918.6:p.Tyr91His	H-2-Kb	9	7	5	LNYAHTAQL	LNYAYTAQL	NetMHCpan	10.4	5.2	0.5	239	0.025	31.415	21.341	0.679	6.52	17.41	5.2	10.4	48.31811688	60.27122243	36.16179668	45.42030017	M6	-0.185714286	-0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.034	239	411	15	0.03649635	1qG1	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.182401885	sgMsh2	cell line
chr1	175899449	175899449	GA	G	ENSMUST00000039725.11	1	ENSMUSG00000039748	FS	E/X	442	Exo1	ENSMUST00000039725.11:c.1328del	ENSMUSP00000039376.6:p.Asn443MetfsTer35	H-2-Kb	9	14	0	VGMAHHLTL	NA	NetMHCpan	32.3	NA	NA	179	0.257	137.244	NA	NA	NA	58.59	NA	32.3	NA	263.6999212	NA	215.8986864	M6	0.6	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.249	179	38	0	0	1qH4	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr1	173203457	173203457	A	C	ENSMUST00000216603.1	5	ENSMUSG00000046643	missense	T/P	34	Olfr218	ENSMUST00000216603.1:c.100A>C	ENSMUSP00000150815.1:p.Thr34Pro	H-2-Kb	9	7	5	IVFLPLYLL	IVFLTLYLL	NetMHC	67.8	62.99	0.929	240	0.017	112.814	100.286	0.889	62.99	67.8	120.2	137.5	80.37296686	88.12720572	142.3147781	154.9708446	M6	2.157142857	2.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.023	240	0	0	NA	1qH3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.12338951	sgMsh2	cell line
chr1	133658840	133658840	T	G	ENSMUST00000179598.3	1	ENSMUSG00000094410	missense	N/T	253	Gm38394	ENSMUST00000179598.3:c.758A>C	ENSMUSP00000136026.1:p.Asn253Thr	H-2-Kb	9	10	2	STIVKHALI	SNIVKHALI	NetMHC	100.82	69.65	0.691	259	0.154	310.42	175.923	0.567	69.65	100.82	127.4	281.8	224.4450336	352.4601324	231.8729034	339.0392667	M6	1.671428571	1.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.169	259	164	25	0.152439024	1qE4	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.906644664	sgMsh2	cell line
chr1	110925087	110925087	A	T	ENSMUST00000094626.4	1	ENSMUSG00000047216	missense	Y/N	373	Cdh19	ENSMUST00000094626.4:c.1117T>A	ENSMUSP00000092210.3:p.Tyr373Asn	H-2-Kb	9	5	7	VFLLPYNIL	VFLLPYYIL	SMM	98.653	114.054	1.156	227	0.119	176.295	208.175	1.181	208.26	179.11	561.9	499.8	114.0538632	98.65293264	208.0894201	173.4802343	M6	1.357142857	1.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.114	227	0	0	NA	1qE2.1	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.611582791	sgMsh2	cell line
chr1	123445299	123445299	A	G	ENSMUST00000112606.7	1	ENSMUSG00000036815	missense	I/T	204	Dpp10	ENSMUST00000112606.7:c.611T>C	ENSMUSP00000108225.1:p.Ile204Thr	H-2-Kb	9	3	9	LIYIFENNT	LIYIFENNI	NetMHC	184.51	25.12	0.136	132	0.311	233.18	68.152	0.292	25.12	184.51	41	757.3	95.3037523	221.8758325	112.5252535	244.4837509	M6	-0.742857143	1.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.306	132	0	0	NA	1qE2.3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr1	119527237	119527237	T	C	ENSMUST00000183952.1	NA	ENSMUSG00000098923	missense	Y/H	243	Tmem185b	ENSMUST00000183952.1:c.727T>C	ENSMUSP00000139021.1:p.Tyr243His	H-2-Kb	9	10	2	SHISIFIPL	SYISIFIPL	NetMHCpan	99	117	1.182	210	0.371	224.362	220.237	0.982	296.53	185.63	117	99	189.7186388	263.0934282	250.7552301	331.3217908	M6	2.528571429	2.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.374	210	120	28	0.233333333	1qE2.3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr1	139733178	139733178	CT	C	ENSMUST00000111989.8	1	ENSMUSG00000070594	FS	R/X	591	Gm4788	ENSMUST00000111989.8:c.1771del	ENSMUSP00000107620.2:p.Arg591GlyfsTer32	H-2-Kb	9	20	0	MNMELHSAM	NA	NetMHCpan	174.7	NA	NA	235	0.162	314.32	NA	NA	NA	185.94	NA	174.7	NA	442.7004873	NA	477.8042407	M6	0.271428571	0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.168	235	0	0	NA	1qF	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.901279903	sgMsh2	cell line
chr1	165551108	165551108	T	C	ENSMUST00000027852.14	1	ENSMUSG00000026567	missense	M/T	822	Adcy10	ENSMUST00000027852.14:c.2465T>C	ENSMUSP00000027852.8:p.Met822Thr	H-2-Kb	9	11	1	TSLSHQMLV	MSLSHQMLV	NetMHC	188.72	170.9	0.906	161	0.031	404.261	366.256	0.906	170.9	188.72	373.5	576.1	359.0128555	353.2726369	537.3410257	455.2500477	M6	0.885714286	0.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.041	161	0	0	NA	1qH2.3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.219955214	sgMsh2	cell line
chr1	174836908	174836908	G	A	ENSMUST00000055294.3	1	ENSMUSG00000050069	missense	P/L	125	Grem2	ENSMUST00000055294.3:c.374C>T	ENSMUSP00000049640.3:p.Pro125Leu	H-2-Kb	9	6	6	CAFCKLQRV	CAFCKPQRV	NetMHC	190.08	651.95	3.43	103	0.175	267.939	693.443	2.588	651.95	190.08	1302.8	373	537.1678354	228.091972	734.93681	307.7868068	M6	0.2	0.857142857	TRUE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.175	103	0	0	NA	1qH3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.938833232	sgMsh2	cell line
chr1	181054895	181054895	TA	T	ENSMUST00000036819.6	1	ENSMUSG00000038768	FS	Y/X	74	9130409I23Rik	ENSMUST00000036819.6:c.221del	ENSMUSP00000042889.6:p.Tyr74LeufsTer11	H-2-Kb	9	6	6	VIFCALYLV	VIFCAYVFG	SMM	205.168	492.164	2.399	198	0.222	275.378	1652.982	6.003	4140.3	218.67	2813.8	587	492.1641774	205.1681772	423.8869047	332.0855664	M6	2.514285714	2.614285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.225	198	0	0	NA	1qH4	chr1-176213282-195166209	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr1	174250568	174250568	A	G	ENSMUST00000214725.1	5	ENSMUSG00000050788	missense	F/L	120	Olfr419	ENSMUST00000214725.1:c.358T>C	ENSMUSP00000149512.1:p.Phe120Leu	H-2-Kb	9	9	3	MGLDRYVAI	MGFDRYVAI	NetMHCpan	176	25.6	0.145	152	0.23	267.445	86.898	0.325	67.32	239.6	25.6	176	149.3172559	418.8996524	106.4755765	295.2908568	M6	0.714285714	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.218	152	0	0	NA	1qH3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr1	158572975	158572975	A	G	ENSMUST00000193042.5	1	ENSMUSG00000026587	missense	Q/R	524	Astn1	ENSMUST00000193042.5:c.1571A>G	ENSMUSP00000142322.1:p.Gln524Arg	H-2-Kb	9	8	4	TIFRRGFDL	TIFQRGFDL	NetMHCpan	180.2	304.1	1.688	251	0.187	346.875	421.912	1.216	601.62	363.19	304.1	180.2	507.1191374	472.1826226	336.7053368	330.5597718	M6	-0.5	-6.34E-17	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.198	251	0	0	NA	1qH1	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr1	135167045	135167045	T	C	ENSMUST00000027682.8	1	ENSMUSG00000026424	missense	I/V	154	Gpr37l1	ENSMUST00000027682.8:c.460A>G	ENSMUSP00000027682.8:p.Ile154Val	H-2-Kb	9	10	2	CVVWHSYYL	CIVWHSYYL	SMM	366.53	378.538	1.033	152	0.178	457.755	527.6	1.153	517.1	471.51	538.1	444	378.5384504	366.5303993	726.524058	713.2634994	M6	0.071428571	0.671428571	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.186	152	0	0	NA	1qE4	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.997845606	sgMsh2	cell line
chr10	5022126	5022126	T	A	ENSMUST00000215295.1	5	ENSMUSG00000096054	missense	I/F	8761	Syne1	ENSMUST00000215295.1:c.26281A>T	ENSMUSP00000150262.1:p.Ile8761Phe	H-2-Db	9	11	1	FGLTCLVPM	IGLTCLVPM	NetMHC	60.15	506.36	8.418	74	0.176	306.28	885.956	2.893	506.36	60.15	862.9	223.9	1229.192778	523.1424958	909.0128028	388.6601375	M6	1.985714286	2.285714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.188	74	18	5	0.277777778	10qA1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr1	193240306	193240306	C	T	ENSMUST00000016338.14	1	ENSMUSG00000016194	missense	V/M	148	Hsd11b1	ENSMUST00000016338.14:c.442G>A	ENSMUSP00000016338.8:p.Val148Met	H-2-Db	9	10	2	YMVMSTAAL	YVVMSTAAL	NetMHC	125.99	1911.42	15.171	167	0.066	473.688	2143.091	4.524	1911.42	125.99	1809.3	404.6	2374.761503	542.7752049	2396.458982	603.3509488	M6	1.714285714	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.064	167	0	0	NA	1qH6	chr1-176213282-195166209	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.343344725	sgMsh2	cell line
chr10	79997840	79997840	AC	A	ENSMUST00000171637.7	1	ENSMUSG00000035722	FS	H/X	46	Abca7	ENSMUST00000171637.7:c.143del	ENSMUSP00000128121.1:p.Pro48LeufsTer30	H-2-Db	9	5	9	VAVRHSHPL	VAVRHSHPP	NetMHC	149.41	14883.63	99.616	54	0.204	252.796	7089.259	28.043	14883.63	149.41	9705.3	158.4	4473.217343	377.2419664	4391.066356	347.1922322	M6	-0.757142857	-0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.207	54	21	3	0.142857143	10qC1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr10	79997840	79997840	AC	A	ENSMUST00000171637.7	1	ENSMUSG00000035722	FS	H/X	46	Abca7	ENSMUST00000171637.7:c.143del	ENSMUSP00000128121.1:p.Pro48LeufsTer30	H-2-Db	9	14	0	WSITNATFQ	NA	SMMPMBEC	202.568	NA	NA	54	0.204	296.897	NA	NA	NA	220.01	NA	4624.1	NA	373.7833913	NA	202.5676081	M6	0.1	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.207	54	21	3	0.142857143	10qC1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr10	80730907	80730907	A	C	ENSMUST00000020420.8	1	ENSMUSG00000020198	missense	I/M	80	Ap3d1	ENSMUST00000020420.8:c.240T>G	ENSMUSP00000020420.7:p.Ile80Met	H-2-Db	9	5	7	WAAFNIMEV	WAAFNIIEV	NetMHCpan	142.9	122.7	0.859	222	0.162	398.595	303.122	0.76	236.74	407.59	122.7	142.9	369.5047282	389.6009436	406.9771255	433.0818667	M6	1.171428571	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.186	222	98	13	0.132653061	10qC1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.997845606	sgMsh2	cell line
chr10	50754122	50754122	G	T	ENSMUST00000035606.9	5	ENSMUSG00000038774	missense	S/I	1769	Ascc3	ENSMUST00000035606.9:c.5306G>T	ENSMUSP00000036726.8:p.Ser1769Ile	H-2-Kb	8	8	4	MNPIYYSL	MNPSYYSL	NetMHC	10.83	12.27	1.133	150	0.247	32.613	36.465	1.118	12.27	10.83	28.9	21.7	44.02911945	43.52512229	62.62388407	64.23030732	M6	-0.028571429	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.241	150	52	8	0.153846154	10qB3	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr1	193240306	193240306	C	T	ENSMUST00000016338.14	1	ENSMUSG00000016194	missense	V/M	148	Hsd11b1	ENSMUST00000016338.14:c.442G>A	ENSMUSP00000016338.8:p.Val148Met	H-2-Kb	8	5	7	VNFLSYMV	VNFLSYVV	NetMHCpan	33.3	58.8	1.766	167	0.066	72.069	139.342	1.933	115.1	42.34	58.8	33.3	163.5836898	101.7981768	247.0244836	154.0777756	M6	1.014285714	1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.064	167	0	0	NA	1qH6	chr1-176213282-195166209	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.343344725	sgMsh2	cell line
chr10	20357669	20357669	A	C	ENSMUST00000169712.2	1	ENSMUSG00000019992	missense	N/T	328	Mtfr2	ENSMUST00000169712.2:c.983A>C	ENSMUSP00000129315.1:p.Asn328Thr	H-2-Kb	8	6	6	VSLISTAL	VSLISNAL	NetMHC	49.7	94.67	1.905	138	0.138	79.504	112.755	1.418	94.67	49.7	172.8	90.5	87.64759423	68.50779666	130.8398387	93.0550614	M6	1.657142857	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.15	138	13	3	0.230769231	10qA3	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.804714199	sgMsh2	cell line
chr1	194780562	194780562	A	G	ENSMUST00000027952.11	1	ENSMUSG00000026640	missense	H/R	879	Plxna2	ENSMUST00000027952.11:c.2636A>G	ENSMUSP00000027952.5:p.His879Arg	H-2-Kb	8	8	4	VTIRGVNL	VTIHGVNL	NetMHC	74.49	317.58	4.263	118	0.237	88.972	181.985	2.045	317.58	74.49	167.3	91.3	196.6708524	105.3755853	154.0777756	86.64430052	M6	0.485714286	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.259	118	18	3	0.166666667	1qH6	chr1-176213282-195166209	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr10	64088725	64088725	T	C	ENSMUST00000105439.1	1	ENSMUSG00000042846	missense	N/S	221	Lrrtm3	ENSMUST00000105439.1:c.662A>G	ENSMUSP00000101079.1:p.Asn221Ser	H-2-Kb	8	11	1	SLALFPRL	NLALFPRL	NetMHCpan	46.8	449.4	9.603	109	0.183	114.638	781.235	6.815	1915.21	108.01	449.4	46.8	770.4420888	121.2662646	792.027024	139.5532644	M6	1.414285714	1.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.185	109	0	0	NA	10qB4	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.992480845	sgMsh2	cell line
chr1	194796987	194796987	A	G	ENSMUST00000027952.11	1	ENSMUSG00000026640	missense	T/A	1319	Plxna2	ENSMUST00000027952.11:c.3955A>G	ENSMUSP00000027952.5:p.Thr1319Ala	H-2-Kb	8	10	2	RAYAMRVL	RTYAMRVL	NetMHC	151.2	152.87	1.011	152	0.23	169.91	135.28	0.796	152.87	151.2	159.2	187.8	99.48096742	153.7234066	117.6901185	186.0972691	M6	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.233	152	44	8	0.181818182	1qH6	chr1-176213282-195166209	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr1	191058906	191058906	T	C	ENSMUST00000110893.9	1	ENSMUSG00000026632	missense	N/S	57	Tatdn3	ENSMUST00000110893.9:c.170A>G	ENSMUSP00000106518.3:p.Asn57Ser	H-2-Kb	8	11	1	SGFVLPCL	NGFVLPCL	SMMPMBEC	163.961	930.551	5.675	133	0.158	168.271	1269.873	7.547	5091.47	186.82	1466.4	167.6	1073.346637	168.9429215	930.550614	163.9607892	M6	2.157142857	2.157142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.165	133	17	3	0.176470588	1qH6	chr1-176213282-195166209	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.885185619	sgMsh2	cell line
chr1	193240306	193240306	C	T	ENSMUST00000016338.14	1	ENSMUSG00000016194	missense	V/M	148	Hsd11b1	ENSMUST00000016338.14:c.442G>A	ENSMUSP00000016338.8:p.Val148Met	H-2-Kb	8	11	1	MVMSTAAL	VVMSTAAL	NetMHC	219.52	49.67	0.226	167	0.066	262.464	93.471	0.356	49.67	219.52	80.1	298.6	147.1431334	313.8629122	106.8415057	226.3288934	M6	1.714285714	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.064	167	0	0	NA	1qH6	chr1-176213282-195166209	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.343344725	sgMsh2	cell line
chr10	57512133	57512133	C	T	ENSMUST00000079833.5	1	ENSMUSG00000019878	missense	L/F	497	Hsf2	ENSMUST00000079833.5:c.1489C>T	ENSMUSP00000078761.4:p.Leu497Phe	H-2-Kb	8	10	2	TFFYLCEL	TLFYLCEL	NetMHCpan	111.4	155.6	1.397	158	0.19	267.258	684.998	2.563	919.06	328.13	155.6	111.4	740.8665723	252.1970487	629.1294278	282.3189304	M6	1.557142857	1.557142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.214	158	56	7	0.125	10qB4	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr10	21382316	21382316	C	T	ENSMUST00000042699.13	1	ENSMUSG00000037542	missense	T/I	104	Aldh8a1	ENSMUST00000042699.13:c.311C>T	ENSMUSP00000038878.7:p.Thr104Ile	H-2-Kb	8	4	8	KTLTLARI	KTLTLART	SMMPMBEC	381.716	1249.511	3.273	88	0.216	479.453	3929.981	8.197	5879.62	507.32	7377.9	548.4	1980.341096	451.5855118	1249.510759	381.7156799	M6	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.234	88	0	0	NA	10qA3	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr1	191356936	191356936	A	G	ENSMUST00000067976.8	1	ENSMUSG00000026626	missense	V/A	275	Ppp2r5a	ENSMUST00000067976.8:c.824T>C	ENSMUSP00000070726.3:p.Val275Ala	H-2-Kb	8	5	7	KQFLMKAL	KQFLMKVL	SMMPMBEC	271.481	610.576	2.249	255	0.153	341.253	792.939	2.324	2306.93	531.29	910.2	395.6	675.6783445	286.906244	610.5763804	271.4813499	M6	0.957142857	0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.147	255	99	14	0.141414141	1qH6	chr1-176213282-195166209	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.788619915	sgMsh2	cell line
chr1	188948540	188948540	A	T	ENSMUST00000060479.13	1	ENSMUSG00000026609	missense	E/V	4905	Ush2a	ENSMUST00000060479.13:c.14714A>T	ENSMUSP00000050454.7:p.Glu4905Val	H-2-Kb	8	7	5	VAYNVAGS	VAYNEAGS	SMM	145.124	345.732	2.382	103	0.155	446.247	1560.008	3.496	2714.75	644.33	4761.1	1559.4	345.7323355	145.1242539	405.2658414	248.1646968	M6	0.257142857	0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.165	103	0	0	NA	1qH6	chr1-176213282-195166209	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.885185619	sgMsh2	cell line
chr10	64088725	64088725	T	C	ENSMUST00000105439.1	1	ENSMUSG00000042846	missense	N/S	221	Lrrtm3	ENSMUST00000105439.1:c.662A>G	ENSMUSP00000101079.1:p.Asn221Ser	H-2-Kb	9	10	2	LSLALFPRL	LNLALFPRL	NetMHC	26.49	54.51	2.058	109	0.183	83.109	104.919	1.262	54.51	26.49	33.9	26.5	169.8673846	159.628341	155.3280893	139.7172407	M6	1.414285714	1.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.185	109	0	0	NA	10qB4	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.992480845	sgMsh2	cell line
chr1	193240306	193240306	C	T	ENSMUST00000016338.14	1	ENSMUSG00000016194	missense	V/M	148	Hsd11b1	ENSMUST00000016338.14:c.442G>A	ENSMUSP00000016338.8:p.Val148Met	H-2-Kb	9	5	7	VNFLSYMVM	VNFLSYVVM	NetMHCpan	14.9	23.7	1.591	167	0.066	35.48	37.563	1.059	63.67	34.56	23.7	14.9	38.29217191	36.40072218	36.83409467	41.04403034	M6	1.785714286	1.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.064	167	0	0	NA	1qH6	chr1-176213282-195166209	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.343344725	sgMsh2	cell line
chr10	78752673	78752673	T	A	ENSMUST00000105383.3	1	ENSMUSG00000078442	missense	K/M	101	Ccdc105	ENSMUST00000105383.3:c.302A>T	ENSMUSP00000101022.2:p.Lys101Met	H-2-Kb	9	11	1	MPPAWYARL	KPPAWYARL	NetMHC	50.07	103.1	2.059	53	0.17	416.089	633.533	1.523	103.1	50.07	200.2	117.5	1066.866308	714.6773197	1154.11743	771.3473645	M6	-0.128571429	0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.188	53	0	0	NA	10qC1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr10	79997840	79997840	AC	A	ENSMUST00000171637.7	1	ENSMUSG00000035722	FS	H/X	46	Abca7	ENSMUST00000171637.7:c.143del	ENSMUSP00000128121.1:p.Pro48LeufsTer30	H-2-Kb	9	5	9	VAVRHSHPL	VAVRHSHPP	NetMHC	53.67	10302.53	191.961	54	0.204	106.08	5759.708	54.296	10302.53	53.67	11737.6	80.3	608.2890519	131.8590675	1216.886295	165.2913018	M6	-0.757142857	-0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.207	54	21	3	0.142857143	10qC1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr10	26271888	26271888	T	C	ENSMUST00000060716.5	5	ENSMUSG00000051354	missense	L/P	487	Samd3	ENSMUST00000060716.5:c.1460T>C	ENSMUSP00000057805.5:p.Leu487Pro	H-2-Kb	9	6	6	QTFNFPETL	QTFNFLETL	NetMHC	70.68	27.41	0.388	99	0.051	201.184	82.234	0.409	27.41	70.68	32	90.4	132.4677013	311.967965	170.7064772	407.6148523	M6	0.014285714	0.014285714	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.061	99	0	0	NA	10qA4	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.327250441	sgMsh2	cell line
chr10	77065287	77065287	AG	A	ENSMUST00000105409.7	1	ENSMUSG00000001435	FS	P/X	1031	Col18a1	ENSMUST00000105409.7:c.3092del	ENSMUSP00000101049.1:p.Pro1031LeufsTer67	H-2-Kb	9	52	0	VTKERWAHL	NA	NetMHC	74.2	NA	NA	67	0.373	89.638	NA	NA	NA	74.2	NA	103.2	NA	114.8444468	NA	76.07640819	M6	-1.485714286	-1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.422	67	492	9	0.018292683	10qC1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr10	57512133	57512133	C	T	ENSMUST00000079833.5	1	ENSMUSG00000019878	missense	L/F	497	Hsf2	ENSMUST00000079833.5:c.1489C>T	ENSMUSP00000078761.4:p.Leu497Phe	H-2-Kb	9	9	3	ATFFYLCEL	ATLFYLCEL	NetMHCpan	16	70.9	4.431	158	0.19	83.58	243.834	2.917	237.49	76.95	70.9	16	258.8868552	92.28051297	250.1785091	90.20902731	M6	1.557142857	1.671428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.214	158	56	7	0.125	10qB4	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr10	80730907	80730907	A	C	ENSMUST00000020420.8	1	ENSMUSG00000020198	missense	I/M	80	Ap3d1	ENSMUST00000020420.8:c.240T>G	ENSMUSP00000020420.7:p.Ile80Met	H-2-Kb	9	3	9	ISWAAFNIM	ISWAAFNII	NetMHCpan	77.2	105.8	1.37	222	0.162	160.434	309.664	1.93	240.79	120.37	105.8	77.2	378.5384504	200.4979793	405.7420321	237.82089	M6	1.2	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.186	222	98	13	0.132653061	10qC1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.997845606	sgMsh2	cell line
chr10	50754122	50754122	G	T	ENSMUST00000035606.9	5	ENSMUSG00000038774	missense	S/I	1769	Ascc3	ENSMUST00000035606.9:c.5306G>T	ENSMUSP00000036726.8:p.Ser1769Ile	H-2-Kb	9	7	5	IMNPIYYSL	IMNPSYYSL	NetMHCpan	106.8	122.5	1.147	150	0.247	213.697	155.456	0.727	120.49	198.25	122.5	106.8	188.4126249	229.1447967	231.3396105	261.9690589	M6	-0.028571429	0.457142857	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.241	150	52	8	0.153846154	10qB3	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr10	62563277	62563277	A	G	ENSMUST00000065887.13	1	ENSMUSG00000036955	missense	Y/H	313	Kif1bp	ENSMUST00000065887.13:c.937T>C	ENSMUSP00000065160.7:p.Tyr313His	H-2-Kb	9	7	5	CWIKHCLTL	CWIKYCLTL	SMM	252.412	202.353	0.802	152	0.197	411.623	333.985	0.811	328.15	396.42	599.6	854.8	202.3531643	252.4120012	339.8208329	426.8251484	M6	0.971428571	0.971428571	TRUE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.19	152	69	13	0.188405797	10qB4	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr1	194796987	194796987	A	G	ENSMUST00000027952.11	1	ENSMUSG00000026640	missense	T/A	1319	Plxna2	ENSMUST00000027952.11:c.3955A>G	ENSMUSP00000027952.5:p.Thr1319Ala	H-2-Kb	9	10	2	RAYAMRVLF	RTYAMRVLF	NetMHCpan	300.6	298.8	0.994	152	0.23	395.227	525.832	1.33	610.51	463.88	298.8	300.6	496.7181164	360.6699835	554.9450731	429.783759	M6	1.242857143	1.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.233	152	44	8	0.181818182	1qH6	chr1-176213282-195166209	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr10	23897365	23897365	T	C	ENSMUST00000041416.7	1	ENSMUSG00000037440	missense	Y/H	97	Vnn1	ENSMUST00000041416.7:c.289T>C	ENSMUSP00000040599.7:p.Tyr97His	H-2-Kb	9	7	5	TIYPHLEEI	TIYPYLEEI	NetMHCpan	162.8	59.8	0.367	95	0.242	280.695	187.481	0.668	155.05	490.72	59.8	162.8	228.6177783	285.1740477	219.9125427	276.216743	M6	-0.685714286	-0.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.262	95	640	160	0.25	10qA4	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr10	57523171	57523171	G	A	ENSMUST00000020027.10	1	ENSMUSG00000019877	missense	A/V	212	Serinc1	ENSMUST00000020027.10:c.635C>T	ENSMUSP00000020027.4:p.Ala212Val	H-2-Kb	9	3	9	LNYLLSLVV	LNYLLSLVA	SMM	342.855	1368.075	3.99	181	0.182	438.089	1841.661	4.204	4884.69	850.08	2279.7	469.5	1368.075294	342.8546153	1403.621462	406.6773641	M6	2.528571429	2.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.202	181	606	164	0.270627063	10qB4	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr10	57523171	57523171	G	A	ENSMUST00000020027.10	1	ENSMUSG00000019877	missense	A/V	212	Serinc1	ENSMUST00000020027.10:c.635C>T	ENSMUSP00000020027.4:p.Ala212Val	H-2-Kb	9	11	1	VVVLFFVYY	AVVLFFVYY	SMM	72.629	215.829	2.972	181	0.182	491.804	1280.069	2.603	2285.19	884.01	9116.8	5740.5	215.8291001	72.6289892	274.9476424	99.59785837	M6	2.171428571	3.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.202	181	606	164	0.270627063	10qB4	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr10	83191774	83191774	T	C	ENSMUST00000040110.7	1	ENSMUSG00000034612	missense	V/A	345	Chst11	ENSMUST00000040110.7:c.1034T>C	ENSMUSP00000045349.7:p.Val345Ala	H-2-Db	9	12	3	YSAPNYLKL	YSVPNYLKL	NetMHCpan	122.5	52.9	0.432	61	0.197	309.537	121.64	0.393	26.34	143.06	52.9	122.5	190.3794203	476.0143004	241.3070442	699.1494173	M6	-0.128571429	-0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.217	61	0	0	NA	10qC1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr10	103404331	103404331	A	G	ENSMUST00000074204.11	1	ENSMUSG00000019894	missense	Q/R	305	Slc6a15	ENSMUST00000074204.11:c.914A>G	ENSMUSP00000073829.4:p.Gln305Arg	H-2-Kb	8	9	3	ATRVFFAL	ATQVFFAL	NetMHC	11.81	16.33	1.383	178	0.208	30.496	37.025	1.214	16.33	11.81	34.9	33.2	39.15074224	29.02284617	44.8476819	31.96980594	M6	1.457142857	1.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.188	178	0	0	NA	10qD1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr10	129501829	129501829	T	C	ENSMUST00000218901.1	NA	ENSMUSG00000044025	missense	F/S	315	Olfr790	ENSMUST00000218901.1:c.944T>C	ENSMUSP00000151759.1:p.Phe315Ser	H-2-Kb	8	13	2	ISFSSKNL	IFFSSKNL	NetMHCpan	18.5	115.8	6.259	77	0.039	19.094	83.126	4.354	110.95	18.52	115.8	18.5	45.89231861	19.66708524	55.30189331	20.68902384	M6	-0.457142857	-0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.053	77	0	0	NA	10qD3	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.28433235	sgMsh2	cell line
chr11	9331622	9331622	GC	G	ENSMUST00000042740.12	5	ENSMUSG00000004668	FS	A/X	3168	Abca13	ENSMUST00000042740.12:c.9505del	ENSMUSP00000040465.6:p.Gln3169SerfsTer45	H-2-Kb	8	18	0	SLSFFTHL	NA	NetMHCpan	17.2	NA	NA	139	0.058	151.882	NA	NA	NA	29.77	NA	17.2	NA	295.6242117	NA	273.9933359	M6	1.214285714	1.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.062	139	0	0	NA	11qA1	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.332615202	sgMsh2	cell line
chr10	83191774	83191774	T	C	ENSMUST00000040110.7	1	ENSMUSG00000034612	missense	V/A	345	Chst11	ENSMUST00000040110.7:c.1034T>C	ENSMUSP00000045349.7:p.Val345Ala	H-2-Kb	8	13	2	SAPNYLKL	SVPNYLKL	NetMHC	34.27	40.77	1.19	61	0.197	109.37	115.98	1.06	40.77	34.27	68	57.4	163.9607892	161.3392375	188.2521739	203.5822922	M6	-0.128571429	-0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.217	61	0	0	NA	10qC1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr10	129462699	129462699	A	G	ENSMUST00000213329.1	5	ENSMUSG00000096497	missense	T/A	8	Olfr787	ENSMUST00000213329.1:c.22A>G	ENSMUSP00000149391.1:p.Thr8Ala	H-2-Kb	8	6	3	VIAEFVLL	VITEFVLL	NetMHCpan	30.7	45.4	1.479	255	0.235	39.298	45.805	1.166	35.18	37.22	45.4	30.7	46.21042896	41.37518989	60.91720937	60.35871704	M6	2.485714286	2.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.236	255	0	0	NA	10qD3	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr10	129626025	129626025	A	G	ENSMUST00000204979.2	2	ENSMUSG00000095002	missense	L/P	12	Olfr798	ENSMUST00000204979.2:c.35T>C	ENSMUSP00000144716.1:p.Leu12Pro	H-2-Kb	8	5	7	SVSEFIPL	SVSEFILL	NetMHC	38.39	159.69	4.16	112	0.036	72.402	215.586	2.978	159.69	38.39	96.3	42.3	271.4813499	102.5038081	318.9627742	115.8083836	M6	1.342857143	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.042	112	0	0	NA	10qD3	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr10	129659829	129659829	A	G	ENSMUST00000217094.1	3	ENSMUSG00000108114	missense	T/A	8	Olfr800	ENSMUST00000217094.1:c.22A>G	ENSMUSP00000151047.1:p.Thr8Ala	H-2-Kb	8	7	2	TAFILLGL	TTFILLGL	NetMHCpan	41.4	46	1.111	245	0.196	102.198	77.224	0.756	83.13	85.89	46	41.4	76.69022289	118.5059074	77.75709016	122.9532464	M6	2.871428571	2.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.202	245	0	0	NA	10qD3	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr10	129160683	129160683	TA	T	ENSMUST00000214271.1	5	ENSMUSG00000061367	FS	F/X	100	Olfr771	ENSMUST00000214271.1:c.300del	ENSMUSP00000151108.1:p.Phe100LeufsTer7	H-2-Kb	8	6	6	VIQVFLLM	VIQVFFTD	NetMHC	93.83	5112.29	54.485	199	0.261	119.114	2777.307	23.316	5112.29	93.83	6812.6	118.9	412.800296	119.3273511	442.3234863	149.1900983	M6	2.5	2.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2613	199	0	0	NA	10qD3	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr10	128225954	128225954	T	C	ENSMUST00000026455.7	1	ENSMUSG00000025389	missense	F/L	25	Mip	ENSMUST00000026455.7:c.73T>C	ENSMUSP00000026455.7:p.Phe25Leu	H-2-Kb	8	7	5	LFYVLFGL	LFYVFFGL	SMMPMBEC	75.29	7.059	0.094	97	0.247	94.735	7.697	0.081	8.12	112.78	60.9	291.1	7.273442335	76.69022289	7.058948282	75.29046857	M6	2.242857143	2.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.238	97	0	0	NA	10qD3	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr10	129160683	129160683	TA	T	ENSMUST00000214271.1	5	ENSMUSG00000061367	FS	F/X	100	Olfr771	ENSMUST00000214271.1:c.300del	ENSMUSP00000151108.1:p.Phe100LeufsTer7	H-2-Kb	8	8	4	QVFLLMFL	NA	SMM	123.521	NA	NA	199	0.261	158.776	NA	NA	NA	139.83	NA	308.1	NA	123.5207728	NA	177.7215122	M6	3.3	3.3	TRUE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2613	199	0	0	NA	10qD3	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr10	129659829	129659829	A	G	ENSMUST00000217094.1	3	ENSMUSG00000108114	missense	T/A	8	Olfr800	ENSMUST00000217094.1:c.22A>G	ENSMUSP00000151047.1:p.Thr8Ala	H-2-Kb	8	5	4	TITAFILL	TITTFILL	SMM	122.67	120.154	0.979	245	0.196	167.994	138.046	0.822	154.73	186.11	139.4	188.3	120.1544888	122.6704617	136.691025	149.8787285	M6	2.928571429	2.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.202	245	0	0	NA	10qD3	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr10	93516261	93516261	C	T	ENSMUST00000129421.7	1	ENSMUSG00000020017	missense	A/V	638	Hal	ENSMUST00000129421.7:c.1913C>T	ENSMUSP00000123336.1:p.Ala638Val	H-2-Kb	8	10	2	TVFSLESL	TAFSLESL	NetMHCpan	70.3	122.4	1.741	188	0.186	221.948	218.218	0.983	206.43	231.21	122.4	70.3	236.4503711	240.2923806	230.0064421	212.686537	M6	1.357142857	1.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.179	188	1	1	1	10qC2	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.960292277	sgMsh2	cell line
chr10	128225954	128225954	T	C	ENSMUST00000026455.7	1	ENSMUSG00000025389	missense	F/L	25	Mip	ENSMUST00000026455.7:c.73T>C	ENSMUSP00000026455.7:p.Phe25Leu	H-2-Kb	8	4	8	FATLFYVL	FATLFYVF	SMM	186.956	3039.065	16.255	97	0.247	256.251	3026.083	11.809	3020.09	366.72	2498.3	271.1	3039.065077	186.956255	3032.075422	241.4015198	M6	2.057142857	2.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.238	97	0	0	NA	10qD3	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr10	130163110	130163110	A	G	ENSMUST00000216530.1	5	ENSMUSG00000058084	missense	I/T	72	Olfr825	ENSMUST00000216530.1:c.215T>C	ENSMUSP00000149981.1:p.Ile72Thr	H-2-Kb	8	6	6	GNLSFTDL	GNLSFIDL	SMMPMBEC	301.12	345.732	1.148	265	0.215	382.006	453.04	1.186	814.89	549.22	476.8	375.2	429.2793522	388.8123042	345.7323355	301.1202761	M6	0.271428571	0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.22	265	0	0	NA	10qD3	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr10	103404331	103404331	A	G	ENSMUST00000074204.11	1	ENSMUSG00000019894	missense	Q/R	305	Slc6a15	ENSMUST00000074204.11:c.914A>G	ENSMUSP00000073829.4:p.Gln305Arg	H-2-Kb	8	11	1	RVFFALGL	QVFFALGL	NetMHCpan	56.1	116.2	2.071	178	0.208	278.836	511.295	1.834	593.31	569.36	116.2	56.1	429.2793522	264.0827294	613.3946729	293.5891489	M6	2.685714286	2.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.188	178	0	0	NA	10qD1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr10	130472110	130472110	CA	C	ENSMUST00000164227.3	5	ENSMUSG00000091511	FS	L/X	753	Vmn2r87	ENSMUST00000164227.3:c.2258del	ENSMUSP00000129215.2:p.Leu753TrpfsTer25	H-2-Kb	8	15	0	ASLWLSWL	NA	SMM	312.421	NA	NA	431	0.026	407.641	NA	NA	NA	717.62	NA	457.4	NA	312.4208431	NA	357.8821189	M6	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.025	431	0	0	NA	10qD3	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr10	130472110	130472110	CA	C	ENSMUST00000164227.3	5	ENSMUSG00000091511	FS	L/X	753	Vmn2r87	ENSMUST00000164227.3:c.2258del	ENSMUSP00000129215.2:p.Leu753TrpfsTer25	H-2-Kb	8	19	0	LSWLGTFL	NA	SMMPMBEC	307.426	NA	NA	431	0.026	420.694	NA	NA	NA	1101.66	NA	318.1	NA	523.2870654	NA	307.4255792	M6	1.085714286	1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.025	431	0	0	NA	10qD3	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr11	9331622	9331622	GC	G	ENSMUST00000042740.12	5	ENSMUSG00000004668	FS	A/X	3168	Abca13	ENSMUST00000042740.12:c.9505del	ENSMUSP00000040465.6:p.Gln3169SerfsTer45	H-2-Kb	9	17	0	TSLSFFTHL	NA	NetMHC	3.22	NA	NA	139	0.058	15.48	NA	NA	NA	3.22	NA	3.6	NA	27.35961615	NA	33.05597718	M6	1.214285714	1.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.062	139	0	0	NA	11qA1	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.332615202	sgMsh2	cell line
chr10	129626025	129626025	A	G	ENSMUST00000204979.2	2	ENSMUSG00000095002	missense	L/P	12	Olfr798	ENSMUST00000204979.2:c.35T>C	ENSMUSP00000144716.1:p.Leu12Pro	H-2-Kb	9	4	8	TSVSEFIPL	TSVSEFILL	NetMHC	66.41	157	2.364	112	0.036	133.399	221.183	1.658	157	66.41	211.1	85.2	231.2650474	181.5975563	301.4740949	216.3963843	M6	1.342857143	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.042	112	0	0	NA	10qD3	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr10	128110868	128110868	TA	T	ENSMUST00000220049.1	5	ENSMUSG00000040054	FS	N/X	84	Baz2a	ENSMUST00000220049.1:c.251del	ENSMUSP00000151961.1:p.Asn84ThrfsTer93	H-2-Kb	9	34	0	THPFFLSSL	NA	NetMHCpan	84.2	NA	NA	221	0.199	202.234	NA	NA	NA	95.36	NA	84.2	NA	309.1078255	NA	342.9651563	M6	1.428571429	1.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.203	221	111	5	0.045045045	10qD3	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr11	9331622	9331622	GC	G	ENSMUST00000042740.12	5	ENSMUSG00000004668	FS	A/X	3168	Abca13	ENSMUST00000042740.12:c.9505del	ENSMUSP00000040465.6:p.Gln3169SerfsTer45	H-2-Kb	9	20	0	SFFTHLKSL	NA	NetMHCpan	60.5	NA	NA	139	0.058	129.036	NA	NA	NA	108.41	NA	60.5	NA	149.6614677	NA	161.5288124	M6	0.257142857	0.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.062	139	0	0	NA	11qA1	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.332615202	sgMsh2	cell line
chr11	4148945	4148945	CA	C	ENSMUST00000093381.10	1	ENSMUSG00000051427	FS	L/X	187	Ccdc157	ENSMUST00000093381.10:c.560del	ENSMUSP00000091074.4:p.Leu187CysfsTer72	H-2-Kb	9	53	0	AACGRWARL	NA	SMMPMBEC	113.045	NA	NA	60	0.067	191.309	NA	NA	NA	160.23	NA	477.2	NA	222.3873092	NA	113.0446465	M6	-0.314285714	0.3	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.085	60	10	0	0	11qA1	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.456004713	sgMsh2	cell line
chr10	115423268	115423268	C	A	ENSMUST00000036044.8	1	ENSMUSG00000034163	missense	P/Q	1606	Zfc3h1	ENSMUST00000036044.8:c.4817C>A	ENSMUSP00000044069.8:p.Pro1606Gln	H-2-Kb	9	8	4	VCLQLYTNM	VCLPLYTNM	NetMHCpan	126.6	116	0.916	204	0.23	170.628	204.029	1.196	192.16	160.85	116	126.6	301.3769268	281.2613131	215.8986864	180.405594	M6	0.071428571	1.257142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.235	204	39	11	0.282051282	10qD2	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr10	130163110	130163110	A	G	ENSMUST00000216530.1	5	ENSMUSG00000058084	missense	I/T	72	Olfr825	ENSMUST00000216530.1:c.215T>C	ENSMUSP00000149981.1:p.Ile72Thr	H-2-Kb	9	10	2	FTDLFYSSV	FIDLFYSSV	NetMHC	172.77	202.67	1.173	265	0.215	302.521	266.244	0.88	202.67	172.77	803	499.9	237.1974414	281.2613131	295.2908568	323.779986	M6	0.628571429	0.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.22	265	0	0	NA	10qD3	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr10	129462699	129462699	A	G	ENSMUST00000213329.1	5	ENSMUSG00000096497	missense	T/A	8	Olfr787	ENSMUST00000213329.1:c.22A>G	ENSMUSP00000149391.1:p.Thr8Ala	H-2-Kb	9	5	4	SVIAEFVLL	SVITEFVLL	NetMHCpan	102.3	87.8	0.858	255	0.235	229.822	200.378	0.872	153.52	182.88	87.8	102.3	247.2350273	276.7642557	269.9292823	321.5511003	M6	2.485714286	2.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.236	255	0	0	NA	10qD3	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr10	128110868	128110868	TA	T	ENSMUST00000220049.1	5	ENSMUSG00000040054	FS	N/X	84	Baz2a	ENSMUST00000220049.1:c.251del	ENSMUSP00000151961.1:p.Asn84ThrfsTer93	H-2-Kb	9	92	0	CMILFLIRI	NA	SMM	116.174	NA	NA	221	0.199	203.714	NA	NA	NA	211.43	NA	1650.6	NA	116.1742828	NA	195.99726	M6	2.771428571	3.4	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.203	221	111	5	0.045045045	10qD3	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr11	9331622	9331622	GC	G	ENSMUST00000042740.12	5	ENSMUSG00000004668	FS	A/X	3168	Abca13	ENSMUST00000042740.12:c.9505del	ENSMUSP00000040465.6:p.Gln3169SerfsTer45	H-2-Kb	9	5	8	SSILARASM	SSILARAQH	NetMHC	234.54	16379.8	69.838	139	0.058	481.84	10518.42	21.83	16379.8	234.54	20483.5	414	4657.040341	549.6800816	3883.738676	698.6344547	M6	1.214285714	1.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.062	139	0	0	NA	11qA1	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.332615202	sgMsh2	cell line
chr10	129160683	129160683	TA	T	ENSMUST00000214271.1	5	ENSMUSG00000061367	FS	F/X	100	Olfr771	ENSMUST00000214271.1:c.300del	ENSMUSP00000151108.1:p.Phe100LeufsTer7	H-2-Kb	9	6	6	VIQVFLLMF	VIQVFFTDV	SMM	194.138	216.327	1.114	199	0.261	285.635	144.013	0.504	38.81	289.27	71.7	2223	216.3266376	194.1377536	237.2739171	282.000579	M6	2.257142857	2.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2613	199	0	0	NA	10qD3	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr10	83191774	83191774	T	C	ENSMUST00000040110.7	1	ENSMUSG00000034612	missense	V/A	345	Chst11	ENSMUST00000040110.7:c.1034T>C	ENSMUSP00000045349.7:p.Val345Ala	H-2-Kb	9	10	5	FNYSAPNYL	FNYSVPNYL	NetMHCpan	205.3	260.7	1.27	61	0.197	250.371	324.048	1.294	357.62	295.1	260.7	205.3	290.4758291	205.6411387	488.9337312	435.7626466	M6	-0.414285714	-0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.217	61	0	0	NA	10qC1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr10	130472110	130472110	CA	C	ENSMUST00000164227.3	5	ENSMUSG00000091511	FS	L/X	753	Vmn2r87	ENSMUST00000164227.3:c.2258del	ENSMUSP00000129215.2:p.Leu753TrpfsTer25	H-2-Kb	9	9	3	GSWLWGASL	NA	NetMHCpan	270.2	NA	NA	431	0.026	374.862	NA	NA	NA	300.72	NA	270.2	NA	563.7804345	NA	449.0037829	M6	0.914285714	0.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.025	431	0	0	NA	10qD3	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr11	9331622	9331622	GC	G	ENSMUST00000042740.12	5	ENSMUSG00000004668	FS	A/X	3168	Abca13	ENSMUST00000042740.12:c.9505del	ENSMUSP00000040465.6:p.Gln3169SerfsTer45	H-2-Kb	9	47	0	VQLSPLSSL	NA	NetMHC	321.1	NA	NA	139	0.058	448.437	NA	NA	NA	321.1	NA	479.9	NA	416.9749833	NA	741.7370966	M6	1.057142857	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.062	139	0	0	NA	11qA1	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.332615202	sgMsh2	cell line
chr10	129463212	129463212	T	C	ENSMUST00000213329.1	5	ENSMUSG00000096497	missense	Y/H	179	Olfr787	ENSMUST00000213329.1:c.535T>C	ENSMUSP00000149391.1:p.Tyr179His	H-2-Kb	9	7	5	FSCDHFPIL	FSCDYFPIL	SMMPMBEC	181.656	144.627	0.796	381	0.189	286.881	186.193	0.649	172.35	324.24	204.4	459.8	200.0368468	249.5226649	144.6272072	181.6561058	M6	0.757142857	0.757142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.197	381	0	0	NA	10qD3	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr10	83191774	83191774	T	C	ENSMUST00000040110.7	1	ENSMUSG00000034612	missense	V/A	345	Chst11	ENSMUST00000040110.7:c.1034T>C	ENSMUSP00000045349.7:p.Val345Ala	H-2-Kb	9	12	3	YSAPNYLKL	YSVPNYLKL	NetMHCpan	252.8	193.2	0.764	61	0.197	456.573	312.981	0.686	186.11	355.64	193.2	252.8	529.7976163	588.9928191	432.7628777	557.5065832	M6	-0.128571429	-0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.217	61	0	0	NA	10qC1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr10	128225954	128225954	T	C	ENSMUST00000026455.7	1	ENSMUSG00000025389	missense	F/L	25	Mip	ENSMUST00000026455.7:c.73T>C	ENSMUSP00000026455.7:p.Phe25Leu	H-2-Kb	9	10	2	VLFGLGASL	VFFGLGASL	NetMHCpan	191.6	151	0.788	97	0.247	419.773	188.797	0.45	142.36	356.21	151	191.6	238.8416155	621.0263106	226.5948317	483.3369531	M6	1.514285714	2.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.238	97	0	0	NA	10qD3	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr10	128225954	128225954	T	C	ENSMUST00000026455.7	1	ENSMUSG00000025389	missense	F/L	25	Mip	ENSMUST00000026455.7:c.73T>C	ENSMUSP00000026455.7:p.Phe25Leu	H-2-Kb	9	4	8	FATLFYVLF	FATLFYVFF	SMM	115.109	210.916	1.832	97	0.247	258.835	462.582	1.787	677.85	368.99	1957.7	1319.2	210.91623	115.1091906	247.3147393	148.6791262	M6	2.2	2.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.238	97	0	0	NA	10qD3	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr11	30149994	30149994	T	A	ENSMUST00000006629.13	5	ENSMUSG00000020315	missense	I/F	195	Sptbn1	ENSMUST00000006629.13:c.583A>T	ENSMUSP00000006629.7:p.Ile195Phe	H-2-Kb	9	9	3	VNFHNFTTS	VNIHNFTTS	SMM	120.812	337.373	2.793	164	0.238	276.273	966.303	3.498	1450.38	372.97	2294.1	416.4	337.3727491	120.8119794	482.2253089	179.5767056	M6	-0.471428571	-0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.24	164	603	144	0.23880597	11qA3.3	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr10	130472110	130472110	CA	C	ENSMUST00000164227.3	5	ENSMUSG00000091511	FS	L/X	753	Vmn2r87	ENSMUST00000164227.3:c.2258del	ENSMUSP00000129215.2:p.Leu753TrpfsTer25	H-2-Kb	9	17	0	LWLSWLGTF	NA	SMM	245.533	NA	NA	431	0.026	456.634	NA	NA	NA	499.03	NA	2307.2	NA	245.5330734	NA	414.2380608	M6	1.085714286	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.025	431	0	0	NA	10qD3	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr11	57201163	57201163	A	T	ENSMUST00000036315.15	1	ENSMUSG00000020524	missense	Y/F	228	Gria1	ENSMUST00000036315.15:c.683A>T	ENSMUSP00000044494.9:p.Tyr228Phe	H-2-Db	9	11	1	FILANLGFM	YILANLGFM	NetMHC	63.12	25.28	0.401	108	0.148	125.151	99.133	0.792	25.28	63.12	83.3	121.9	124.342616	143.4233955	114.9661532	128.4014713	M6	1.457142857	1.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.145	108	0	0	NA	11qB1.3	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.777890392	sgMsh2	cell line
chr11	43556667	43556667	G	T	ENSMUST00000050574.6	1	ENSMUSG00000044707	missense	R/L	59	Ccnjl	ENSMUST00000050574.6:c.176G>T	ENSMUSP00000058111.6:p.Arg59Leu	H-2-Db	9	9	3	SALHLAIYL	SARHLAIYL	NetMHC	172.76	6022.1	34.858	90	0.033	214.407	4374.189	20.401	6022.1	172.76	8244.8	501.5	2082.667788	190.8182902	2726.277127	237.9961875	M6	1.885714286	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.047	90	3	0	0	11qB1.1	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.252143782	sgMsh2	cell line
chr11	73814500	73814500	A	G	ENSMUST00000144724.2	2	ENSMUSG00000061984	missense	V/A	194	Olfr392	ENSMUST00000144724.2:c.581T>C	ENSMUSP00000123649.2:p.Val194Ala	H-2-Db	9	10	2	FANELMIFI	FVNELMIFI	SMM	200.734	1284.163	6.397	197	0.152	314.94	2543.055	8.075	3658.63	406.23	7290.5	928.5	1284.162549	200.7335661	1427.479894	223.6505652	M6	1.5	1.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.156	197	0	0	NA	11qB4	chr11-69590981-82929860	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.836902767	sgMsh2	cell line
chr11	57201163	57201163	A	T	ENSMUST00000036315.15	1	ENSMUSG00000020524	missense	Y/F	228	Gria1	ENSMUST00000036315.15:c.683A>T	ENSMUSP00000044494.9:p.Tyr228Phe	H-2-Kb	8	9	3	YHFILANL	YHYILANL	NetMHC	27.26	13.26	0.486	108	0.148	48.534	37.11	0.765	13.26	27.26	50	68.8	33.78625068	45.57639811	40.43337559	51.49202839	M6	1.428571429	1.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.145	108	0	0	NA	11qB1.3	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.777890392	sgMsh2	cell line
chr11	54917807	54917807	T	C	ENSMUST00000102731.7	5	ENSMUSG00000020400	missense	N/S	518	Tnip1	ENSMUST00000102731.7:c.1553A>G	ENSMUSP00000099792.1:p.Asn518Ser	H-2-Kb	8	7	5	VTLTSAQL	VTLTNAQL	NetMHC	33.83	131.35	3.883	69	0.203	52.786	101.959	1.932	131.35	33.83	203.2	98.8	72.56713881	50.90260401	60.77710368	54.66885777	M6	0.528571429	0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.217	69	150	16	0.106666667	11qB1.3	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr11	57201163	57201163	A	T	ENSMUST00000036315.15	1	ENSMUSG00000020524	missense	Y/F	228	Gria1	ENSMUST00000036315.15:c.683A>T	ENSMUSP00000044494.9:p.Tyr228Phe	H-2-Kb	8	7	5	IGYHFILA	IGYHYILA	NetMHCpan	28.2	28.7	1.018	108	0.148	76.461	89.21	1.167	75.68	69.22	28.7	28.2	131.1414557	106.8415057	102.7401038	83.70280268	M6	1.142857143	1.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.145	108	0	0	NA	11qB1.3	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.777890392	sgMsh2	cell line
chr11	35234893	35234893	C	T	ENSMUST00000069837.3	1	ENSMUSG00000056427	missense	P/L	133	Slit3	ENSMUST00000069837.3:c.398C>T	ENSMUSP00000066857.3:p.Pro133Leu	H-2-Kb	8	9	3	STLKLTRL	STPKLTRL	NetMHC	72.92	219.81	3.014	195	0.185	111.877	309.582	2.767	219.81	72.92	396.1	100.8	288.2305431	122.9532464	330.9329418	128.7478543	M6	0.228571429	0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.183	195	0	0	NA	11qA4	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.981751322	sgMsh2	cell line
chr11	34688463	34688463	A	T	ENSMUST00000093193.11	1	ENSMUSG00000020143	missense	L/M	708	Dock2	ENSMUST00000093193.11:c.2122T>A	ENSMUSP00000090884.5:p.Leu708Met	H-2-Kb	8	9	3	ATMAYKKL	ATLAYKKL	NetMHCpan	62.7	80.7	1.287	194	0.046	117.441	94.582	0.805	84.03	96.29	80.7	62.7	118.7790917	204.0515979	105.1332282	138.5925865	M6	-0.328571429	-0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.052	194	0	0	NA	11qA4	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.278967589	sgMsh2	cell line
chr11	61491124	61491124	G	T	ENSMUST00000079080.12	1	ENSMUSG00000001034	missense	L/I	321	Mapk7	ENSMUST00000079080.12:c.961C>A	ENSMUSP00000078087.6:p.Leu321Ile	H-2-Kb	8	11	1	ISLLGRML	LSLLGRML	SMMPMBEC	146.13	623.362	4.266	79	0.228	171.567	951.229	5.544	1370.14	166.23	1063.5	247.8	838.9575756	176.9049561	623.3615346	146.1302072	M6	1.085714286	1.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	79	22	4	0.181818182	11qB2	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr11	72058021	72058021	G	A	ENSMUST00000075258.12	1	ENSMUSG00000040543	missense	R/W	769	Pitpnm3	ENSMUST00000075258.12:c.2305C>T	ENSMUSP00000074737.6:p.Arg769Trp	H-2-Kb	8	9	3	VVWHWQDL	VVRHWQDL	NetMHCpan	164	1200.7	7.321	119	0.277	222.002	907.754	4.089	1202.31	270.69	1200.7	164	614.8086937	260.4593785	592.570463	183.5439188	M6	-0.571428571	-0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.294	119	0	0	NA	11qB4	chr11-69590981-82929860	5	5	0	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr11	46389319	46389319	A	G	ENSMUST00000109237.8	1	ENSMUSG00000020395	missense	F/S	31	Itk	ENSMUST00000109237.8:c.92T>C	ENSMUSP00000104860.2:p.Phe31Ser	H-2-Kb	8	11	1	SVLTKASL	FVLTKASL	NetMHC	297.35	809.77	2.723	66	0.273	375.03	752.993	2.008	809.77	297.35	773.6	387.2	732.3859428	404.3337559	627.6824703	362.8607551	M6	1.171428571	1.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.286	66	0	0	NA	11qB1.1	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr11	54493324	54493324	A	G	ENSMUST00000046835.13	1	ENSMUSG00000035992	missense	N/S	349	Fnip1	ENSMUST00000046835.13:c.1046A>G	ENSMUSP00000049026.7:p.Asn349Ser	H-2-Kb	8	11	1	SEFFFSHF	NEFFFSHF	SMMPMBEC	217.14	1232.367	5.675	103	0.155	285.252	1836.74	6.439	3606.75	338.27	1908.5	292.7	1764.980859	277.8049629	1232.366829	217.1400833	M6	0.528571429	0.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.154	103	47	6	0.127659574	11qB1.3	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.826173244	sgMsh2	cell line
chr11	65855384	65855384	T	C	ENSMUST00000080665.9	5	ENSMUSG00000056752	missense	T/A	3968	Dnah9	ENSMUST00000080665.9:c.11902A>G	ENSMUSP00000079494.3:p.Thr3968Ala	H-2-Kb	8	5	7	VAKWLSAL	VAKWLSTL	NetMHCpan	256.9	254.4	0.99	62	0.21	396.113	672.266	1.697	664.17	383.21	254.4	256.9	680.361923	409.0157201	758.1235717	481.6593553	M6	0.8	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.228	62	0	0	NA	11qB3	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr11	57528173	57528173	A	T	ENSMUST00000020830.13	1	ENSMUSG00000020522	missense	D/V	53	Mfap3	ENSMUST00000020830.13:c.158A>T	ENSMUSP00000020830.7:p.Asp53Val	H-2-Kb	8	4	8	SAGSYSGV	SAGSYSGD	NetMHC	397.02	22519.42	56.721	143	0.035	446.118	12796.838	28.685	22519.42	397.02	29869.5	1113.8	3074.255792	459.9811133	2458.895091	432.2549746	M6	0.328571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.038	143	86	2	0.023255814	11qB1.3	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.20386093	sgMsh2	cell line
chr11	61485766	61485766	TC	T	ENSMUST00000040522.6	2	ENSMUSG00000042436	FS	P/X	18	Mfap4	ENSMUST00000040522.6:c.57del	ENSMUSP00000038971.6:p.Cys20AlafsTer55	H-2-Kb	8	51	0	SSTPMAPV	NA	SMM	356.238	NA	NA	26	0.154	440.415	NA	NA	NA	409.05	NA	1391.9	NA	356.2377999	NA	471.7805149	M6	0.457142857	0.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.191	26	0	0	NA	11qB2	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr11	61671685	61671685	T	A	ENSMUST00000004959.2	1	ENSMUSG00000004837	missense	C/S	161	Grap	ENSMUST00000004959.2:c.481T>A	ENSMUSP00000004959.2:p.Cys161Ser	H-2-Kb	8	10	2	ASFAQAQF	ACFAQAQF	NetMHCpan	311.8	2356.7	7.558	42	0.143	388.581	3968.216	10.212	6741.31	657.24	2356.7	311.8	4761.458462	401.5503419	3174.972734	375.6124682	M6	0.2	0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.173	42	0	0	NA	11qB2	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.928103709	sgMsh2	cell line
chr11	69760935	69760935	G	A	ENSMUST00000231829.1	NA	ENSMUSG00000018776	missense	L/F	97	Slc35g3	ENSMUST00000231829.1:c.289C>T	ENSMUSP00000156297.1:p.Leu97Phe	H-2-Kb	8	9	3	ELFIFRCL	ELLIFRCL	SMMPMBEC	273.993	1185.059	4.325	138	0.239	473.352	2367.272	5.001	9945.58	2604.04	3049	543.3	1685.543635	403.403814	1185.059074	273.9933359	M6	2.242857143	2.242857143	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.232	138	1	0	0	11qB3	chr11-69590981-82929860	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr11	34688463	34688463	A	T	ENSMUST00000093193.11	1	ENSMUSG00000020143	missense	L/M	708	Dock2	ENSMUST00000093193.11:c.2122T>A	ENSMUSP00000090884.5:p.Leu708Met	H-2-Kb	9	11	1	MAYKKLMTV	LAYKKLMTV	NetMHCpan	53.3	93.4	1.752	194	0.046	111.459	136.253	1.222	92.9	63.29	93.4	53.3	179.1059444	159.628341	191.9773533	191.9773533	M6	0.014285714	0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.052	194	0	0	NA	11qA4	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.278967589	sgMsh2	cell line
chr11	51586645	51586645	A	G	ENSMUST00000167797.7	1	ENSMUSG00000020359	missense	N/S	88	Phykpl	ENSMUST00000167797.7:c.263A>G	ENSMUSP00000132190.1:p.Asn88Ser	H-2-Kb	9	11	1	SIVDYAQRL	NIVDYAQRL	NetMHC	65.03	1198.66	18.432	116	0.224	224.193	1403.004	6.258	1198.66	65.03	777.7	75.9	1607.348318	372.4860392	1683.642965	420.0006862	M6	-0.428571429	0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.241	116	21	5	0.238095238	11qB1.3	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr11	51048724	51048724	T	G	ENSMUST00000073543.1	NA	ENSMUSG00000057890	missense	L/V	206	Olfr1375	ENSMUST00000073543.1:c.616T>G	ENSMUSP00000144756.1:p.Leu206Val	H-2-Kb	9	10	2	TVFLFVAPC	TLFLFVAPC	NetMHC	95.5	658.85	6.899	323	0.183	222.429	737.169	3.314	658.85	95.5	783.7	210.3	1175.195176	333.5108752	690.6372522	234.557865	M6	2.328571429	2.7	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.193	323	0	0	NA	11qB1.3	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr11	34688463	34688463	A	T	ENSMUST00000093193.11	1	ENSMUSG00000020143	missense	L/M	708	Dock2	ENSMUST00000093193.11:c.2122T>A	ENSMUSP00000090884.5:p.Leu708Met	H-2-Kb	9	3	9	IQQHFSATM	IQQHFSATL	NetMHC	108.3	43.99	0.406	194	0.046	432.806	302.966	0.7	43.99	108.3	87	183.1	518.9314595	682.5115418	629.8686601	853.5913393	M6	-0.242857143	-0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.052	194	0	0	NA	11qA4	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.278967589	sgMsh2	cell line
chr11	50900193	50900193	T	C	ENSMUST00000116378.7	1	ENSMUSG00000049321	missense	Q/R	341	Zfp2	ENSMUST00000116378.7:c.1022A>G	ENSMUSP00000112079.1:p.Gln341Arg	H-2-Kb	9	7	5	SSLTRHRRI	SSLTQHRRI	NetMHC	109.72	509.02	4.639	183	0.038	348.111	1041.586	2.992	509.02	109.72	970.8	455.1	1175.195176	389.1436965	1112.371876	307.0789168	M6	-1.3	-1.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.043	183	9	0	0	11qB1.3	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.230684737	sgMsh2	cell line
chr11	69760935	69760935	G	A	ENSMUST00000231829.1	NA	ENSMUSG00000018776	missense	L/F	97	Slc35g3	ENSMUST00000231829.1:c.289C>T	ENSMUSP00000156297.1:p.Leu97Phe	H-2-Kb	9	11	1	FIFRCLFHL	LIFRCLFHL	NetMHC	137.67	122.76	0.892	138	0.239	231.857	187.574	0.809	122.76	137.67	165.2	290.1	209.947158	215.8291001	215.8986864	247.8848587	M6	1.142857143	2.1	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.232	138	1	0	0	11qB3	chr11-69590981-82929860	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr11	41971878	41971878	T	A	ENSMUST00000070735.9	1	ENSMUSG00000020436	missense	K/N	126	Gabrg2	ENSMUST00000070735.9:c.378A>T	ENSMUSP00000063812.2:p.Lys126Asn	H-2-Kb	9	4	8	TWYDRRLNF	TWYDRRLKF	SMM	73.979	111.972	1.514	114	0.202	118.503	165.095	1.393	216.1	140.79	744.9	438.1	111.9721455	73.97926292	114.0906357	96.21659863	M6	-1.528571429	-1.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.216	114	0	0	NA	11qA5	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr11	59589837	59589837	T	G	ENSMUST00000215626.1	5	ENSMUSG00000048919	missense	Q/P	84	Olfr223	ENSMUST00000215626.1:c.251A>C	ENSMUSP00000149991.1:p.Gln84Pro	H-2-Kb	9	8	4	IVPPLLVNL	IVPQLLVNL	NetMHCpan	129.6	141.4	1.091	147	0.136	391.079	352.033	0.9	130.07	151.04	141.4	129.6	588.9928191	631.1171763	562.6651281	673.3641643	M6	1.271428571	2.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.126	147	0	0	NA	11qB1.3	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.675959927	sgMsh2	cell line
chr11	61546578	61546578	A	C	ENSMUST00000179936.7	1	ENSMUSG00000001036	missense	I/S	56	Epn2	ENSMUST00000179936.7:c.167T>G	ENSMUSP00000136950.1:p.Ile56Ser	H-2-Kb	9	6	6	VAFSESMSM	VAFSEIMSM	NetMHCpan	123.9	82.3	0.664	84	0.321	145.532	154.465	1.061	140.62	155.51	82.3	123.9	168.310031	135.5532704	254.8296748	263.7849417	M6	0.1	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.332	84	168	39	0.232142857	11qB2	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr11	69944246	69944246	A	G	ENSMUST00000018710.12	1	ENSMUSG00000018566	missense	M/T	380	Slc2a4	ENSMUST00000018710.12:c.1139T>C	ENSMUSP00000018710.6:p.Met380Thr	H-2-Kb	9	11	1	TSYVSIVAI	MSYVSIVAI	NetMHCpan	173.5	137.8	0.794	62	0.048	288.038	313.641	1.089	235.44	232.32	137.8	173.5	391.8411118	385.5760057	405.7420321	343.7557727	M6	2.442857143	2.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.069	62	0	0	NA	11qB3	chr11-69590981-82929860	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.370168531	sgMsh2	cell line
chr11	54493324	54493324	A	G	ENSMUST00000046835.13	1	ENSMUSG00000035992	missense	N/S	349	Fnip1	ENSMUST00000046835.13:c.1046A>G	ENSMUSP00000049026.7:p.Asn349Ser	H-2-Kb	9	10	2	FSEFFFSHF	FNEFFFSHF	SMMPMBEC	166.437	185.033	1.112	103	0.155	216.734	259.001	1.195	307.57	235.72	668.8	321.4	210.4311361	197.7470439	185.033345	166.4370463	M6	0.528571429	0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.154	103	47	6	0.127659574	11qB1.3	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.826173244	sgMsh2	cell line
chr11	60487239	60487239	A	G	ENSMUST00000071880.8	5	ENSMUSG00000042678	missense	E/G	1360	Myo15	ENSMUST00000071880.8:c.4079A>G	ENSMUSP00000071777.2:p.Glu1360Gly	H-2-Kb	9	4	8	SRFGKFVGI	SRFGKFVEI	NetMHC	261.93	462.04	1.764	117	0.034	307.74	408.472	1.327	462.04	261.93	726.3	622.1	354.9032693	309.1078255	339.8208329	306.3726549	M6	1.371428571	1.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.046	117	0	0	NA	11qB2	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.246779021	sgMsh2	cell line
chr11	73354368	73354368	T	G	ENSMUST00000120137.2	2	ENSMUSG00000062128	missense	L/R	205	Olfr20	ENSMUST00000120137.2:c.614T>G	ENSMUSP00000114110.1:p.Leu205Arg	H-2-Kb	9	4	8	VIFVTGGRI	VIFVTGGLI	NetMHC	266.9	418.75	1.569	443	0.194	431.376	548.238	1.271	418.75	266.9	607.7	386.2	488.776143	476.5516746	632.7760017	542.312981	M6	0.785714286	2.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.197	443	0	0	NA	11qB4	chr11-69590981-82929860	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr11	65855384	65855384	T	C	ENSMUST00000080665.9	5	ENSMUSG00000056752	missense	T/A	3968	Dnah9	ENSMUST00000080665.9:c.11902A>G	ENSMUSP00000079494.3:p.Thr3968Ala	H-2-Kb	9	4	8	LVAKWLSAL	LVAKWLSTL	NetMHCpan	330.3	316.2	0.957	62	0.21	385.746	454.022	1.177	486.24	374.2	316.2	330.3	421.8033261	397.2921646	509.6241499	473.4237051	M6	0.8	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.228	62	0	0	NA	11qB3	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr11	35234893	35234893	C	T	ENSMUST00000069837.3	1	ENSMUSG00000056427	missense	P/L	133	Slit3	ENSMUST00000069837.3:c.398C>T	ENSMUSP00000066857.3:p.Pro133Leu	H-2-Kb	9	8	4	QSTLKLTRL	QSTPKLTRL	SMM	336.597	566.383	1.683	195	0.185	433.519	1078.084	2.487	1426.29	422.15	2368	1961.7	566.3827268	336.5968133	729.8775406	444.8872915	M6	0.228571429	0.228571429	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.183	195	0	0	NA	11qA4	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.981751322	sgMsh2	cell line
chr11	57201163	57201163	A	T	ENSMUST00000036315.15	1	ENSMUSG00000020524	missense	Y/F	228	Gria1	ENSMUST00000036315.15:c.683A>T	ENSMUSP00000044494.9:p.Tyr228Phe	H-2-Kb	10	7	5	IGYHFILANL	IGYHYILANL	NetMHC	6.2	6.99	1.127	108	0.148	352.854	457.27	1.296	6.99	6.2	9.1	7.7	1378.256343	975.7307681	905.4406743	698.0073568	M6	1.428571429	1.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.145	108	0	0	NA	11qB1.3	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.777890392	sgMsh2	cell line
chr11	80226108	80226108	A	T	ENSMUST00000055056.15	1	ENSMUSG00000017686	missense	I/F	103	Rhot1	ENSMUST00000055056.15:c.307A>T	ENSMUSP00000057669.9:p.Ile103Phe	H-2-Db	9	3	9	YAVNNKHSF	YAVNNKHSI	NetMHC	62.07	8.6	0.139	164	0.14	103.772	22.725	0.219	8.6	62.07	14	92.3	31.44995295	115.2444448	36.43929785	137.2682193	M6	-1.128571429	-1.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.14	164	89	17	0.191011236	11qB5	chr11-69590981-82929860	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.751066585	sgMsh2	cell line
chr11	100431194	100431194	C	A	ENSMUST00000092688.11	1	ENSMUSG00000017176	missense	Q/H	217	Nt5c3b	ENSMUST00000092688.11:c.651G>T	ENSMUSP00000090360.5:p.Gln217His	H-2-Db	9	11	1	HQLQNKTNI	QQLQNKTNI	NetMHC	68.09	127.98	1.88	116	0.06	165.308	285.115	1.725	127.98	68.09	374.7	158.6	246.9562376	175.2346559	323.2734217	172.0164577	M6	-0.971428571	-0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.051	116	151	8	0.052980132	11qD	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.273602828	sgMsh2	cell line
chr11	77777511	77777511	A	G	ENSMUST00000168348.7	1	ENSMUSG00000000631	missense	I/V	66	Myo18a	ENSMUST00000168348.7:c.196A>G	ENSMUSP00000130696.1:p.Ile66Val	H-2-Db	9	5	7	LEISNPVPI	LEISNPIPI	NetMHC	149.56	225.92	1.511	115	0.148	205.022	256.005	1.249	225.92	149.56	560.1	439	262.796756	223.1618741	249.2126022	186.8830873	M6	0.814285714	0.814285714	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.15	115	185	38	0.205405405	11qB5	chr11-69590981-82929860	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.804714199	sgMsh2	cell line
chr11	80226080	80226080	A	G	ENSMUST00000055056.15	1	ENSMUSG00000017686	missense	I/M	93	Rhot1	ENSMUST00000055056.15:c.279A>G	ENSMUSP00000057669.9:p.Ile93Met	H-2-Db	9	3	9	ISQANVICM	ISQANVICI	NetMHC	253.99	234.96	0.925	175	0.16	477.277	443.691	0.93	234.96	253.99	320.4	330	761.412496	745.7959146	566.982951	624.5540084	M6	1.128571429	1.128571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.169	175	100	19	0.19	11qB5	chr11-69590981-82929860	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.906644664	sgMsh2	cell line
chr11	95969851	95969851	T	G	ENSMUST00000013559.2	1	ENSMUSG00000013415	missense	S/R	359	Igf2bp1	ENSMUST00000013559.2:c.1075A>C	ENSMUSP00000013559.2:p.Ser359Arg	H-2-Db	9	8	4	AAMRLQSHL	AAMSLQSHL	SMM	336.217	330.842	0.984	137	0.058	466.447	489.283	1.049	583.59	561.66	681.7	531.5	330.8415143	336.2172565	394.9753567	401.39319	M6	-0.357142857	0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.072	137	51	1	0.019607843	11qD	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.386262815	sgMsh2	cell line
chr11	94570669	94570669	T	C	ENSMUST00000103164.3	1	ENSMUSG00000076435	missense	H/R	278	Acsf2	ENSMUST00000103164.3:c.833A>G	ENSMUSP00000099453.3:p.His278Arg	H-2-Db	9	11	1	RNIVNNSML	HNIVNNSML	NetMHCpan	355.7	541.7	1.523	232	0.211	374.205	522.96	1.398	1227	760.51	541.7	355.7	504.219921	377.2419664	474.8648239	371.1675498	M6	0.942857143	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.221	232	23	8	0.347826087	11qD	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr11	106330112	106330112	GT	G	ENSMUST00000021056.7	1	ENSMUSG00000001027	FS	N/X	907	Scn4a	ENSMUST00000021056.7:c.2720del	ENSMUSP00000021056.7:p.Asn907ThrfsTer87	H-2-Kb	8	17	0	TSLSMCPL	NA	NetMHC	45.53	NA	NA	154	0.201	76.175	NA	NA	NA	45.53	NA	115.9	NA	77.57825382	NA	74.77217263	M6	1.257142857	1.257142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.207	154	0	0	NA	11qE1	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr11	106330112	106330112	GT	G	ENSMUST00000021056.7	1	ENSMUSG00000001027	FS	N/X	907	Scn4a	ENSMUST00000021056.7:c.2720del	ENSMUSP00000021056.7:p.Asn907ThrfsTer87	H-2-Kb	8	47	0	TSRSHYSL	NA	NetMHC	83.9	NA	NA	154	0.201	110.878	NA	NA	NA	83.9	NA	310.7	NA	97.66523514	NA	124.0909187	M6	-1.085714286	-1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.207	154	0	0	NA	11qE1	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr11	94463486	94463486	A	G	ENSMUST00000100561.9	1	ENSMUSG00000020866	missense	V/A	201	Cacna1g	ENSMUST00000100561.9:c.602T>C	ENSMUSP00000098127.3:p.Val201Ala	H-2-Kb	8	6	6	SMRILATL	SMRILVTL	NetMHC	125.84	682.84	5.426	75	0.24	204.421	684.749	3.35	682.84	125.84	351.5	171.3	686.6572344	237.5417764	846.7203545	293.5891489	M6	1.514285714	1.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.239	75	0	0	NA	11qD	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr11	106376336	106376336	A	G	ENSMUST00000106816.7	1	ENSMUSG00000009210	missense	Y/C	109	Prr29	ENSMUST00000106816.7:c.326A>G	ENSMUSP00000102429.1:p.Tyr109Cys	H-2-Kb	8	5	7	LVYHHHCL	LVYHHHYL	NetMHCpan	79.1	15.7	0.198	25	0.2	148.987	42.351	0.284	35.3	220.6	15.7	79.1	52.8128981	160.9681675	49.40148455	137.0061303	M6	-0.057142857	-0.057142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.241	25	0	0	NA	11qE1	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr11	80330582	80330582	T	C	ENSMUST00000017836.7	1	ENSMUSG00000017692	missense	V/A	182	Rhbdl3	ENSMUST00000017836.7:c.545T>C	ENSMUSP00000017836.7:p.Val182Ala	H-2-Kb	8	6	6	FLYNGALL	FLYNGVLL	SMMPMBEC	315.312	909.369	2.884	76	0.145	431.283	1158.447	2.686	2001.54	549.03	1145.4	457.3	1171.493815	405.2658414	909.3686959	315.3116375	M6	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.164	76	0	0	NA	11qB5	chr11-69590981-82929860	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.879820857	sgMsh2	cell line
chr11	95969851	95969851	T	G	ENSMUST00000013559.2	1	ENSMUSG00000013415	missense	S/R	359	Igf2bp1	ENSMUST00000013559.2:c.1075A>C	ENSMUSP00000013559.2:p.Ser359Arg	H-2-Kb	9	8	4	AAMRLQSHL	AAMSLQSHL	NetMHC	159.08	222.94	1.401	137	0.058	409.595	316.523	0.773	222.94	159.08	226.5	212.3	406.5462879	606.8900259	544.816184	635.696763	M6	-0.357142857	0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.072	137	51	1	0.019607843	11qD	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.386262815	sgMsh2	cell line
chr11	80330582	80330582	T	C	ENSMUST00000017836.7	1	ENSMUSG00000017692	missense	V/A	182	Rhbdl3	ENSMUST00000017836.7:c.545T>C	ENSMUSP00000017836.7:p.Val182Ala	H-2-Kb	9	4	8	ALFLYNGAL	ALFLYNGVL	NetMHCpan	136.3	280.8	2.06	76	0.145	313.442	623.902	1.99	841.75	242.07	280.8	136.3	771.0987516	547.154531	476.7053215	384.8132346	M6	1	1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.164	76	0	0	NA	11qB5	chr11-69590981-82929860	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.879820857	sgMsh2	cell line
chr11	105972931	105972931	T	C	ENSMUST00000001963.13	1	ENSMUSG00000020681	missense	Y/H	402	Ace	ENSMUST00000001963.13:c.1204T>C	ENSMUSP00000001963.7:p.Tyr402His	H-2-Kb	9	10	2	QHYLQYKDL	QYYLQYKDL	SMM	224.445	161.849	0.721	127	0.228	298.92	270.261	0.904	320.61	307.27	725.7	731.3	161.8489924	224.4450336	219.9125427	290.5694826	M6	-0.842857143	-0.842857143	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.249	127	4	0	0	11qE1	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr11	80330582	80330582	T	C	ENSMUST00000017836.7	1	ENSMUSG00000017692	missense	V/A	182	Rhbdl3	ENSMUST00000017836.7:c.545T>C	ENSMUSP00000017836.7:p.Val182Ala	H-2-Kb	9	3	9	VALFLYNGA	VALFLYNGV	SMM	359.84	90.18	0.251	76	0.145	384.378	85.49	0.222	42.89	402.95	80.8	710.1	90.17995204	359.8404656	105.9863656	365.8053055	M6	1	1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.164	76	0	0	NA	11qB5	chr11-69590981-82929860	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.879820857	sgMsh2	cell line
chr11	94463486	94463486	A	G	ENSMUST00000100561.9	1	ENSMUSG00000020866	missense	V/A	201	Cacna1g	ENSMUST00000100561.9:c.602T>C	ENSMUSP00000098127.3:p.Val201Ala	H-2-Kb	9	6	6	SMRILATLL	SMRILVTLL	SMM	368.222	342.066	0.929	75	0.24	455.245	372.507	0.818	338.86	407.89	502.9	502.6	342.0660715	368.2222268	402.9489236	520.2954165	M6	1.785714286	1.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.239	75	0	0	NA	11qD	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr11	106330112	106330112	GT	G	ENSMUST00000021056.7	1	ENSMUSG00000001027	FS	N/X	907	Scn4a	ENSMUST00000021056.7:c.2720del	ENSMUSP00000021056.7:p.Asn907ThrfsTer87	H-2-Kb	9	47	0	TSRSHYSLC	NA	SMMPMBEC	297.338	NA	NA	154	0.201	415.337	NA	NA	NA	515.82	NA	873.8	NA	314.8545691	NA	297.3377153	M6	-0.614285714	-0.614285714	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.207	154	0	0	NA	11qE1	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr11	114987405	114987405	T	G	ENSMUST00000045075.2	1	ENSMUSG00000034641	missense	T/P	94	Cd300ld	ENSMUST00000045075.2:c.280A>C	ENSMUSP00000047022.2:p.Thr94Pro	H-2-Kb	9	4	8	RDFIFTVPM	RDFIFTVTM	SMMPMBEC	413.285	752.056	1.82	385	0.034	465.648	927.044	1.991	2749.39	1529.58	988.9	447	865.1870294	484.2950164	752.0556875	413.2853397	M6	1.985714286	1.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.027	385	0	0	NA	11qE2	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.144848556	sgMsh2	cell line
chr12	64471562	64471562	C	A	ENSMUST00000059833.7	NA	ENSMUSG00000043060	missense	K/N	1043	Fscb	ENSMUST00000059833.7:c.3129G>T	ENSMUSP00000051554.6:p.Lys1043Asn	H-2-Db	9	7	5	VSGTNDDQI	VSGTKDDQI	NetMHC	119.37	17286.61	144.815	216	0.208	145.259	9508.967	65.462	17286.61	119.37	14214.3	388.9	4793.138739	147.4415881	4803.634994	143.0770575	M6	-1.514285714	-1.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.224	216	0	0	NA	12qC1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr12	98275382	98275382	T	C	ENSMUST00000075072.5	1	ENSMUSG00000021886	missense	M/T	98	Gpr65	ENSMUST00000075072.5:c.293T>C	ENSMUSP00000074581.4:p.Met98Thr	H-2-Kb	8	6	6	VFFTYTNF	VFFTYMNF	SMMPMBEC	20.358	18.019	0.885	301	0.037	21.686	17.92	0.826	17.82	22.25	45.7	37.4	16.50973111	21.12224132	18.01938647	20.35822922	M6	0.314285714	0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.037	301	0	0	NA	12qE	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.198496169	sgMsh2	cell line
chr12	11456985	11456985	TA	T	ENSMUST00000124065.1	2	ENSMUSG00000086022	FS	K/X	303	Rad51ap2	ENSMUST00000124065.1:c.914del	ENSMUSP00000128854.1:p.Asn305MetfsTer25	H-2-Kb	8	26	0	VTTSHSPL	NA	NetMHC	52.66	NA	NA	139	0.129	63.794	NA	NA	NA	52.66	NA	188.4	NA	55.68522772	NA	71.90183929	M6	-0.571428571	-0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1295	139	0	0	NA	12qA1.1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.694736592	sgMsh2	cell line
chr12	75716177	75716177	C	A	ENSMUST00000021450.5	1	ENSMUSG00000021054	missense	G/V	410	Sgpp1	ENSMUST00000021450.5:c.1229G>T	ENSMUSP00000021450.4:p.Gly410Val	H-2-Kb	8	8	4	ITYVMVGF	ITYGMVGF	NetMHCpan	71.7	131.8	1.838	192	0.021	126.749	402.15	3.173	373.04	92.9	131.8	71.7	585.787365	231.6007706	431.2608157	160.597951	M6	1.528571429	1.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.028	192	40	1	0.025	12qC3	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.150213317	sgMsh2	cell line
chr12	85139623	85139623	T	A	ENSMUST00000221972.1	1	ENSMUSG00000019235	missense	Y/F	237	Rps6kl1	ENSMUST00000221972.1:c.710A>T	ENSMUSP00000152336.1:p.Tyr237Phe	H-2-Kb	8	7	5	DHFQFSGL	DHFQYSGL	SMM	68.824	84.477	1.227	107	0.206	111.998	168.647	1.506	236.43	141.82	972.8	631.6	84.47729517	68.82401428	100.8648855	82.17505435	M6	0.214285714	0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.206	107	1	0	0	12qD1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr12	11456985	11456985	TA	T	ENSMUST00000124065.1	2	ENSMUSG00000086022	FS	K/X	303	Rad51ap2	ENSMUST00000124065.1:c.914del	ENSMUSP00000128854.1:p.Asn305MetfsTer25	H-2-Kb	8	12	2	KMYMWKMI	NA	NetMHCpan	178.7	NA	NA	139	0.129	426.899	NA	NA	NA	238.99	NA	178.7	NA	1020.328459	NA	614.8086937	M6	0.585714286	0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1295	139	0	0	NA	12qA1.1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.694736592	sgMsh2	cell line
chr11	117812466	117812466	C	T	ENSMUST00000026649.13	1	ENSMUSG00000048277	missense	A/V	36	Syngr2	ENSMUST00000026649.13:c.107C>T	ENSMUSP00000026649.7:p.Ala36Val	H-2-Kb	8	6	6	VSMVLVLI	VSMVLALI	NetMHCpan	211	48.7	0.231	93	0.129	416.557	107.089	0.257	46.99	355.87	48.7	211	240.2923806	694.6083504	165.4778997	477.2434758	M6	3.085714286	3.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.146	93	213	33	0.154929577	11qE2	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.783255153	sgMsh2	cell line
chr11	117812466	117812466	C	T	ENSMUST00000026649.13	1	ENSMUSG00000048277	missense	A/V	36	Syngr2	ENSMUST00000026649.13:c.107C>T	ENSMUSP00000026649.7:p.Ala36Val	H-2-Kb	8	11	1	VLIVFSCI	ALIVFSCI	NetMHCpan	183.7	735.4	4.003	93	0.129	340.461	1235.282	3.628	2919.74	536.25	735.4	183.7	1516.142424	402.476011	954.4210297	278.4453695	M6	3.071428571	3.071428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.146	93	213	33	0.154929577	11qE2	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.783255153	sgMsh2	cell line
chr12	54685943	54685943	TG	T	ENSMUST00000161592.7	1	ENSMUSG00000054302	FS	H/X	127	Eapp	ENSMUST00000161592.7:c.381del	ENSMUSP00000123698.1:p.His127GlnfsTer52	H-2-Kb	8	53	0	SLFQTVML	NA	SMMPMBEC	306.719	NA	NA	204	0.221	372.068	NA	NA	NA	617.01	NA	379.6	NA	364.5356443	NA	306.71852	M6	1.757142857	1.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.227	204	194	39	0.201030928	12qC1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr12	88795504	88795504	G	A	ENSMUST00000163134.7	5	ENSMUSG00000066392	missense	S/N	107	Nrxn3	ENSMUST00000163134.7:c.320G>A	ENSMUSP00000129678.1:p.Ser107Asn	H-2-Kb	8	11	1	NSWHFLMV	SSWHFLMV	NetMHCpan	158.7	22.1	0.139	269	0.19	264.274	32.335	0.122	23.39	637.57	22.1	158.7	46.316955	294.2659418	41.2800296	234.2825811	M6	1.114285714	1.114285714	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.192	269	0	0	NA	12qD3	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr11	117772845	117772845	T	C	ENSMUST00000026659.9	1	ENSMUSG00000025572	missense	I/V	514	Tmc6	ENSMUST00000026659.9:c.1540A>G	ENSMUSP00000026659.3:p.Ile514Val	H-2-Kb	8	10	2	LVLKMAVL	LILKMAVL	SMMPMBEC	395.13	281.67	0.713	106	0.075	457.257	401.56	0.878	565.93	825.08	490.7	423.9	312.4208431	490.6140712	281.6696149	395.1299959	M6	2.257142857	2.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.081	106	32	1	0.03125	11qE2	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.434545667	sgMsh2	cell line
chr12	31708932	31708932	A	G	ENSMUST00000236002.1	NA	ENSMUSG00000044067	missense	I/T	397	Gpr22	ENSMUST00000236002.1:c.1190T>C	ENSMUSP00000158030.1:p.Ile397Thr	H-2-Kb	8	8	4	GTTTFHPL	GTTIFHPL	SMMPMBEC	181.443	200.789	1.107	350	0.026	344.511	294.142	0.854	1035.85	893.41	338.4	454.2	249.8848923	234.8226582	200.7890385	181.4429089	M6	-0.042857143	-0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.025	350	0	0	NA	12qA3	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.134119033	sgMsh2	cell line
chr11	120444528	120444528	G	A	ENSMUST00000044105.8	1	ENSMUSG00000039691	missense	A/T	155	Tspan10	ENSMUST00000044105.8:c.463G>A	ENSMUSP00000041883.8:p.Ala155Thr	H-2-Kb	8	11	1	TVLFCLAL	AVLFCLAL	NetMHCpan	383.4	488.4	1.274	123	0.236	447.087	566.688	1.268	1269.72	1057.48	488.4	383.4	579.0819124	458.9231861	554.2937734	435.2512229	M6	3.242857143	3.242857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.243	123	0	0	NA	11qE2	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr12	98275382	98275382	T	C	ENSMUST00000075072.5	1	ENSMUSG00000021886	missense	M/T	98	Gpr65	ENSMUST00000075072.5:c.293T>C	ENSMUSP00000074581.4:p.Met98Thr	H-2-Kb	9	5	7	SVFFTYTNF	SVFFTYMNF	NetMHCpan	31	33.7	1.087	301	0.037	50.82	51.291	1.009	31.09	34.48	33.7	31	68.88267433	67.15989369	103.5738214	93.37916798	M6	0.314285714	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.037	301	0	0	NA	12qE	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.198496169	sgMsh2	cell line
chr12	64967733	64967733	T	C	ENSMUST00000066296.8	1	ENSMUSG00000035614	missense	V/A	586	Togaram1	ENSMUST00000066296.8:c.1757T>C	ENSMUSP00000070382.7:p.Val586Ala	H-2-Kb	9	8	4	QGFAEYAIL	QGFVEYAIL	NetMHCpan	84.6	72.4	0.856	217	0.143	170.949	111.203	0.651	66.96	104.7	72.4	84.6	150.006473	237.1974414	224.5173978	307.7868068	M6	1.414285714	1.414285714	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.158	217	87	10	0.114942529	12qC1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.847632289	sgMsh2	cell line
chr12	16822106	16822106	A	T	ENSMUST00000020908.8	1	ENSMUSG00000057469	missense	T/S	184	E2f6	ENSMUST00000020908.8:c.550A>T	ENSMUSP00000020908.7:p.Thr184Ser	H-2-Kb	9	7	5	LAYVSYQDI	LAYVTYQDI	NetMHC	112.91	79.49	0.704	243	0.21	164.028	168.168	1.025	79.49	112.91	153.9	137.4	182.4357725	206.1151905	206.6569426	190.6557905	M6	-0.242857143	0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.206	243	64	4	0.0625	12qA1.1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr12	75716177	75716177	C	A	ENSMUST00000021450.5	1	ENSMUSG00000021054	missense	G/V	410	Sgpp1	ENSMUST00000021450.5:c.1229G>T	ENSMUSP00000021450.4:p.Gly410Val	H-2-Kb	9	11	1	VMVGFSITF	GMVGFSITF	SMM	93.349	507.119	5.433	192	0.021	171.911	1429.349	8.314	2096.18	191.68	3962.6	381.5	507.1191374	93.34907095	762.5178243	152.1423079	M6	1.771428571	2.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.028	192	40	1	0.025	12qC3	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.150213317	sgMsh2	cell line
chr12	11456985	11456985	TA	T	ENSMUST00000124065.1	2	ENSMUSG00000086022	FS	K/X	303	Rad51ap2	ENSMUST00000124065.1:c.914del	ENSMUSP00000128854.1:p.Asn305MetfsTer25	H-2-Kb	9	12	2	KMYMWKMIF	NA	SMM	143.255	NA	NA	139	0.129	173.374	NA	NA	NA	230.51	NA	152.1	NA	143.2550696	NA	194.6480243	M6	0.714285714	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1295	139	0	0	NA	12qA1.1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.694736592	sgMsh2	cell line
chr12	3984561	3984561	T	C	ENSMUST00000111178.1	1	ENSMUSG00000020658	missense	N/S	203	Efr3b	ENSMUST00000111178.1:c.608A>G	ENSMUSP00000106809.1:p.Asn203Ser	H-2-Kb	9	4	8	IVPSLLFSL	IVPSLLFNL	NetMHCpan	166.1	98.3	0.592	63	0.222	314.099	222.32	0.708	111.13	239.95	98.3	166.1	333.5108752	388.2486909	525.1096507	590.540925	M6	1.571428571	2.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.23	63	0	0	NA	12qA1.1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr12	72470286	72470286	T	C	ENSMUST00000162159.7	1	ENSMUSG00000021090	missense	V/A	603	Lrrc9	ENSMUST00000162159.7:c.1808T>C	ENSMUSP00000124394.1:p.Val603Ala	H-2-Kb	9	4	8	FVFDHDLAL	FVFDHDLVL	SMM	222.9	314.13	1.409	243	0.165	235.276	444.635	1.89	575.14	247.58	741.4	377.4	314.1304236	222.8999649	276.216743	222.9718309	M6	0.285714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.156	243	0	0	NA	12qC3	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.836902767	sgMsh2	cell line
chr12	24044796	24044796	A	G	ENSMUST00000101538.4	1	ENSMUSG00000073158	missense	C/R	125	9030624G23Rik	ENSMUST00000101538.4:c.373T>C	ENSMUSP00000099077.3:p.Cys125Arg	H-2-Kb	9	6	6	SWVLRRCRI	SWVLRCCRI	NetMHC	298.07	249.64	0.838	247	0.15	409.78	346.62	0.846	249.64	298.07	1480.4	1958.9	304.8667072	342.8546153	388.3738676	476.7053215	M6	0.214285714	0.214285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.162	247	0	0	NA	12qA1.3	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.869091335	sgMsh2	cell line
chr12	98275382	98275382	T	C	ENSMUST00000075072.5	1	ENSMUSG00000021886	missense	M/T	98	Gpr65	ENSMUST00000075072.5:c.293T>C	ENSMUSP00000074581.4:p.Met98Thr	H-2-Kb	9	11	1	TNFYSSTAF	MNFYSSTAF	SMM	318.5	323.676	1.016	301	0.037	365.539	317.878	0.87	312.08	327.2	253.8	411.6	323.6756285	318.5004131	476.7053215	403.8778168	M6	0.542857143	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.037	301	0	0	NA	12qE	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.198496169	sgMsh2	cell line
chr12	101058739	101058739	T	C	ENSMUST00000163095.8	5	ENSMUSG00000041846	missense	E/G	167	Ppp4r3a	ENSMUST00000163095.8:c.500A>G	ENSMUSP00000129654.1:p.Glu167Gly	H-2-Db	9	6	6	LALENGGYI	LALENEGYI	NetMHC	10.51	14.84	1.412	155	0.194	31.457	35.527	1.129	14.84	10.51	31.1	20.2	43.01500721	44.01695544	39.95489558	42.71397607	M6	-0.114285714	0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.198	155	214	34	0.158878505	12qE	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr12	113490367	113490367	T	C	ENSMUST00000063317.3	NA	ENSMUSG00000051804	missense	V/A	268	Adam6b	ENSMUST00000063317.3:c.803T>C	ENSMUSP00000065529.2:p.Val268Ala	H-2-Db	9	10	2	TAYTNSDPF	TVYTNSDPF	NetMHCpan	15.4	81.5	5.292	467	0.221	23.883	201.28	8.428	445.31	19.02	81.5	15.4	219.0887109	34.2468002	183.4720865	28.74550879	M6	-1.228571429	-1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.222	467	0	0	NA	12qF1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr13	12212733	12212733	T	A	ENSMUST00000099856.5	1	ENSMUSG00000021311	missense	I/F	736	Mtr	ENSMUST00000099856.5:c.2206A>T	ENSMUSP00000097442.4:p.Ile736Phe	H-2-Kb	8	7	5	VGHLFPFM	VGHLIPFM	NetMHCpan	31.3	763.8	24.403	231	0.165	68.083	2828.237	41.541	3698.75	37.37	763.8	31.3	3117.022951	98.79614526	2539.451951	101.5640475	M6	0.871428571	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.177	231	28	0	0	13qA1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.949562754	sgMsh2	cell line
chr13	11595649	11595649	A	G	ENSMUST00000021750.14	1	ENSMUSG00000021313	missense	V/A	4097	Ryr2	ENSMUST00000021750.14:c.12290T>C	ENSMUSP00000021750.7:p.Val4097Ala	H-2-Kb	8	7	5	IGFNAAVL	IGFNVAVL	SMM	41.375	32.489	0.785	144	0.229	43.132	33.691	0.781	30.94	41.52	51.9	57.1	32.48927349	41.37518989	34.89313575	44.74453509	M6	1.5	1.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.221	144	0	0	NA	13qA1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr13	27245800	27245800	A	C	ENSMUST00000035273.3	1	ENSMUSG00000038891	missense	T/P	74	Prl3b1	ENSMUST00000035273.3:c.220A>C	ENSMUSP00000047680.2:p.Thr74Pro	H-2-Kb	8	8	4	TAWPYGLM	TAWTYGLM	NetMHCpan	43.7	33.9	0.776	97	0.144	173.631	86.002	0.495	40.56	82.57	33.9	43.7	174.0764414	292.2402293	131.4437679	264.691503	M6	0.471428571	0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.157	97	0	0	NA	13qA3.1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.842267528	sgMsh2	cell line
chr12	116841323	116841323	T	A	ENSMUST00000070733.8	1	ENSMUSG00000056553	missense	Y/N	153	Ptprn2	ENSMUST00000070733.8:c.457T>A	ENSMUSP00000064046.7:p.Tyr153Asn	H-2-Kb	8	10	2	RNLPYLEL	RYLPYLEL	NetMHCpan	108.5	442.5	4.078	264	0.159	174.548	1081.609	6.197	1195.52	141.25	442.5	108.5	967.6983488	207.8452003	1215.458122	303.2075422	M6	0.214285714	0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.156	264	21	13	0.619047619	12qF2	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.836902767	sgMsh2	cell line
chr13	11595649	11595649	A	G	ENSMUST00000021750.14	1	ENSMUSG00000021313	missense	V/A	4097	Ryr2	ENSMUST00000021750.14:c.12290T>C	ENSMUSP00000021750.7:p.Val4097Ala	H-2-Kb	8	11	1	AAVLLTNL	VAVLLTNL	NetMHCpan	153.4	37.5	0.244	144	0.229	270.468	68.835	0.255	27.06	175.56	37.5	153.4	100.1705365	377.3462166	106.5957771	365.3759857	M6	1.885714286	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.221	144	0	0	NA	13qA1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr13	9575459	9575459	A	G	ENSMUST00000174552.7	1	ENSMUSG00000048264	missense	I/M	618	Dip2c	ENSMUST00000174552.7:c.1854A>G	ENSMUSP00000133806.1:p.Ile618Met	H-2-Kb	8	5	7	SSLRMLMV	SSLRMLIV	NetMHC	227.75	1260.38	5.534	172	0.198	362.114	1029.923	2.844	1260.38	227.75	922.9	467.1	874.4601036	336.3101696	1136.946424	387.9180607	M6	1.471428571	1.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.22	172	15	2	0.133333333	13qA1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr13	22293541	22293541	T	C	ENSMUST00000228382.1	NA	ENSMUSG00000069295	missense	S/P	117	Vmn1r196	ENSMUST00000228382.1:c.349T>C	ENSMUSP00000154358.1:p.Ser117Pro	H-2-Kb	8	9	3	RAPWWGRL	RASWWGRL	NetMHCpan	195.9	896.8	4.578	235	0.068	341.715	1061.965	3.108	1423.61	271.58	896.8	195.9	1129.11974	421.444121	994.8096742	411.8508816	M6	-0.385714286	-0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.067	235	0	0	NA	13qA3.1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.359439009	sgMsh2	cell line
chr13	64793242	64793242	T	C	ENSMUST00000091554.5	5	ENSMUSG00000033063	missense	D/G	308	Cntnap3	ENSMUST00000091554.5:c.923A>G	ENSMUSP00000089140.4:p.Asp308Gly	H-2-Kb	8	7	5	TSYLGLNF	TSYLDLNF	NetMHCpan	202.2	703.1	3.477	172	0.169	476.558	690.72	1.449	688.43	465.88	703.1	202.2	693.0107956	727.3442335	528.128981	487.2367077	M6	0.628571429	0.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.181	172	0	0	NA	13qB3	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.9710218	sgMsh2	cell line
chr13	23543231	23543231	T	C	ENSMUST00000224359.1	NA	ENSMUSG00000114456	missense	Y/C	41	H2bc9	ENSMUST00000224359.1:c.122A>G	ENSMUSP00000153277.1:p.Tyr41Cys	H-2-Kb	8	9	3	SVCVYKVL	SVYVYKVL	SMMPMBEC	165.478	16.624	0.1	284	0.201	338.312	12.062	0.036	6.66	683.22	7.5	468.3	17.69049561	208.324333	16.6241711	165.4778997	M6	1.957142857	1.957142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.218	284	9	4	0.444444444	13qA3.1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr13	23574069	23574069	T	C	ENSMUST00000105106.1	NA	ENSMUSG00000069268	missense	Y/C	41	H2bc7	ENSMUST00000105106.1:c.122A>G	ENSMUSP00000100738.1:p.Tyr41Cys	H-2-Kb	8	9	3	SVCVYKVL	SVYVYKVL	SMMPMBEC	165.478	16.624	0.1	275	0.2	338.312	12.062	0.036	6.66	683.22	7.5	468.3	17.69049561	208.324333	16.6241711	165.4778997	M6	1.957142857	1.957142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.196	275	0	0	NA	13qA3.1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr13	55247836	55247836	GT	G	ENSMUST00000099490.2	5	ENSMUSG00000021488	FS	G/X	1186	Nsd1	ENSMUST00000099490.2:c.3558del	ENSMUSP00000097089.2:p.Ala1187LeufsTer19	H-2-Kb	8	14	0	ESYFLLTL	NA	NetMHCpan	120.7	NA	NA	79	0.241	313.904	NA	NA	NA	892.84	NA	120.7	NA	318.9627742	NA	308.8445912	M6	1.628571429	1.628571429	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.236	79	72	5	0.069444444	13qB1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr13	49722263	49722263	G	A	ENSMUST00000165316.7	1	ENSMUSG00000037851	missense	V/I	809	Iars	ENSMUST00000165316.7:c.2425G>A	ENSMUSP00000132082.1:p.Val809Ile	H-2-Kb	9	3	9	IHYLMLPRI	IHYLMLPRV	NetMHCpan	73.9	81.8	1.107	118	0.136	93.551	87.682	0.937	62.46	83.8	81.8	73.9	93.56426278	103.3023021	109.7109561	113.3052413	M6	0.942857143	1.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.137	118	90	25	0.277777778	13qA5	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.734972301	sgMsh2	cell line
chr13	67542395	67542395	TA	T	ENSMUST00000181892.8	1	ENSMUSG00000095432	FS	Y/X	249	Zfp748	ENSMUST00000181892.8:c.745del	ENSMUSP00000137928.1:p.Tyr249ThrfsTer47	H-2-Kb	9	44	0	VAMPFVHSI	NA	NetMHCpan	32.9	NA	NA	172	0.023	254.832	NA	NA	NA	98.41	NA	32.9	NA	411.2538721	NA	441.8247089	M6	1.114285714	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.031	172	44	2	0.045454545	13qB3	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.166307601	sgMsh2	cell line
chr13	13759442	13759442	T	C	ENSMUST00000110559.2	1	ENSMUSG00000019726	missense	I/T	3575	Lyst	ENSMUST00000110559.2:c.10724T>C	ENSMUSP00000106188.1:p.Ile3575Thr	H-2-Kb	9	10	2	VTTAYTNRL	VITAYTNRL	NetMHC	98.57	85.53	0.868	129	0.202	195.95	171.394	0.875	85.53	98.57	120.4	128.2	222.3873092	263.6999212	253.0754397	277.4917016	M6	-0.728571429	-0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.212	129	15	0	0	13qA1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr13	66956472	66956472	A	G	ENSMUST00000021990.3	1	ENSMUSG00000021518	missense	N/S	136	Ptdss1	ENSMUST00000021990.3:c.407A>G	ENSMUSP00000021990.3:p.Asn136Ser	H-2-Kb	9	4	8	LMYWLDPSL	LMYWLDPNL	SMM	98.426	84.549	0.859	272	0.261	121.089	87.587	0.723	75.17	140.26	113.3	198.7	84.54929682	98.4260372	90.62541326	101.9177905	M6	-0.071428571	0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.264	272	138	21	0.152173913	13qB3	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr12	116059469	116059469	A	T	ENSMUST00000183125.1	1	ENSMUSG00000042063	missense	E/V	269	Zfp386	ENSMUST00000183125.1:c.806A>T	ENSMUSP00000138305.1:p.Glu269Val	H-2-Kb	9	11	1	VTPYMYKEI	ETPYMYKEI	NetMHC	148.16	6532.43	44.09	172	0.145	252.595	4784.034	18.94	6532.43	148.16	6871.4	218.7	2979.270937	286.4903513	3035.638135	345.3424772	M6	-0.742857143	-0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.147	172	47	6	0.127659574	12qF2	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.788619915	sgMsh2	cell line
chr13	65194380	65194380	T	C	ENSMUST00000221659.1	5	ENSMUSG00000032999	missense	M/V	484	Nlrp4f	ENSMUST00000221659.1:c.1450A>G	ENSMUSP00000152151.1:p.Met484Val	H-2-Kb	9	8	4	VLFVFLKKV	VLFMFLKKV	NetMHCpan	130.4	93.3	0.715	155	0.071	205.17	193.134	0.941	136.09	148.37	93.3	130.4	322.1884741	273.5961615	250.1785091	261.9690589	M6	1.428571429	2.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.079	155	0	0	NA	13qB3	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.423816145	sgMsh2	cell line
chr13	11595649	11595649	A	G	ENSMUST00000021750.14	1	ENSMUSG00000021313	missense	V/A	4097	Ryr2	ENSMUST00000021750.14:c.12290T>C	ENSMUSP00000021750.7:p.Val4097Ala	H-2-Kb	9	7	5	IGFNAAVLL	IGFNVAVLL	NetMHCpan	79.4	111.6	1.406	144	0.229	378.446	470.176	1.242	259.19	154.18	111.6	79.4	851.3536455	602.7122243	681.1613539	607.0856956	M6	2.1	2.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.221	144	0	0	NA	13qA1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr13	53118802	53118802	G	A	ENSMUST00000021918.8	1	ENSMUSG00000021464	missense	L/F	276	Ror2	ENSMUST00000021918.8:c.826C>T	ENSMUSP00000021918.8:p.Leu276Phe	H-2-Kb	9	8	4	SNPFILMRL	SNPLILMRL	NetMHCpan	123.2	176.6	1.433	93	0.172	355.403	342.444	0.964	133.05	164.91	176.6	123.2	508.2881677	545.8961105	685.8829388	652.0036095	M6	1.528571429	1.528571429	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.182	93	0	0	NA	13qB1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.976386561	sgMsh2	cell line
chr12	116841323	116841323	T	A	ENSMUST00000070733.8	1	ENSMUSG00000056553	missense	Y/N	153	Ptprn2	ENSMUST00000070733.8:c.457T>A	ENSMUSP00000064046.7:p.Tyr153Asn	H-2-Kb	9	10	2	RNLPYLELL	RYLPYLELL	NetMHC	181.95	954.58	5.246	264	0.159	335.862	809.025	2.409	954.58	181.95	605.4	239.1	760.5188801	432.6233939	857.5313379	491.1905468	M6	1.257142857	1.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.156	264	21	13	0.619047619	12qF2	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.836902767	sgMsh2	cell line
chr13	27245800	27245800	A	C	ENSMUST00000035273.3	1	ENSMUSG00000038891	missense	T/P	74	Prl3b1	ENSMUST00000035273.3:c.220A>C	ENSMUSP00000047680.2:p.Thr74Pro	H-2-Kb	9	8	4	TAWPYGLML	TAWTYGLML	NetMHCpan	89.7	86.7	0.967	97	0.144	280.853	209.973	0.748	153.72	208.32	86.7	89.7	400.9682638	466.7775928	266.2257137	353.3865369	M6	0.757142857	0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.157	97	0	0	NA	13qA3.1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.842267528	sgMsh2	cell line
chr13	19630076	19630076	C	T	ENSMUST00000002883.6	1	ENSMUSG00000021319	missense	L/F	268	Sfrp4	ENSMUST00000002883.6:c.802C>T	ENSMUSP00000002883.5:p.Leu268Phe	H-2-Kb	9	7	5	RMMLFENCL	RMMLLENCL	SMM	164.479	604.102	3.673	131	0.221	257.546	1549.88	6.018	2651.64	298.14	2354.6	286.4	604.1016195	164.478827	745.1607995	228.6914879	M6	1.114285714	1.114285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.223	131	0	0	NA	13qA2	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr13	60896722	60896722	C	T	ENSMUST00000225859.1	NA	ENSMUSG00000114432	missense	C/Y	22	Gm49391	ENSMUST00000225859.1:c.65G>A	ENSMUSP00000153232.1:p.Cys22Tyr	H-2-Kb	9	4	8	AVFLLILYL	AVFLLILCL	SMM	237.197	429.645	1.811	247	0.215	295.089	881.363	2.987	1333.08	330.61	2138.5	779.8	429.6452354	237.1974414	384.8132346	259.5673122	M6	3.028571429	3.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.209	247	0	0	NA	13qB2	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr12	113490367	113490367	T	C	ENSMUST00000063317.3	NA	ENSMUSG00000051804	missense	V/A	268	Adam6b	ENSMUST00000063317.3:c.803T>C	ENSMUSP00000065529.2:p.Val268Ala	H-2-Kb	9	10	2	TAYTNSDPF	TVYTNSDPF	SMM	336.597	378.538	1.125	467	0.221	436.156	441.835	1.013	455.86	502.27	668.7	603.2	378.5384504	336.5968133	427.809082	370.0411313	M6	-1.228571429	-1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.222	467	0	0	NA	12qF1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr13	75878849	75878849	T	G	ENSMUST00000022078.11	1	ENSMUSG00000021589	missense	K/N	468	Rhobtb3	ENSMUST00000022078.11:c.1404A>C	ENSMUSP00000022078.5:p.Lys468Asn	H-2-Db	9	7	5	YGVSNETFL	YGVSKETFL	NetMHC	4.07	552.12	135.656	175	0.04	38.329	1708.94	44.587	552.12	4.07	1286.7	11.1	2131.179353	65.55714019	2236.505652	66.61468828	M6	0.328571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.039	175	45	3	0.066666667	13qC1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.209225692	sgMsh2	cell line
chr13	105444804	105444804	C	A	ENSMUST00000022235.5	NA	ENSMUSG00000021721	missense	P/H	184	Htr1a	ENSMUST00000022235.5:c.551C>A	ENSMUSP00000022235.4:p.Pro184His	H-2-Db	9	8	4	RSNHNECTI	RSNPNECTI	SMMPMBEC	82.522	130.488	1.581	117	0.094	93.833	193.026	2.057	245.57	86.13	327.8	392	140.4817795	101.5359882	130.4878273	82.52204846	M6	-1.057142857	-1.057142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.092	117	0	0	NA	13qD1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.493558042	sgMsh2	cell line
chr14	45614188	45614188	T	C	ENSMUST00000087320.12	1	ENSMUSG00000037697	missense	Y/C	511	Ddhd1	ENSMUST00000087320.12:c.1532A>G	ENSMUSP00000084577.5:p.Tyr511Cys	H-2-Kb	8	8	4	IMYCTSPL	IMYYTSPL	NetMHC	11.28	6.72	0.596	128	0.039	26.327	19.907	0.756	6.72	11.28	8.5	16.2	35.54184757	37.30267702	31.31410475	36.45356443	M6	0.542857143	0.642857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.044	128	33	2	0.060606061	14qC1	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	0.236049498	sgMsh2	cell line
chr14	52036009	52036009	A	G	ENSMUST00000214071.1	5	ENSMUSG00000044286	missense	M/T	34	Olfr221	ENSMUST00000214071.1:c.101T>C	ENSMUSP00000150675.1:p.Met34Thr	H-2-Kb	8	10	2	VTYAITVL	VMYAITVL	NetMHCpan	26.2	23.8	0.908	83	0.289	60.149	92.464	1.537	54.39	47.73	23.8	26.2	137.3219621	75.63799359	130.5389154	72.56713881	M6	1.657142857	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.305	83	0	0	NA	14qC2	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr14	16423715	16423715	CA	C	ENSMUST00000017629.11	1	ENSMUSG00000017485	FS	K/X	1426	Top2b	ENSMUST00000017629.11:c.4282del	ENSMUSP00000017629.4:p.Ser1428ValfsTer41	H-2-Kb	8	18	0	IFFHFLHI	NA	SMMPMBEC	20.311	NA	NA	54	0.148	23.503	NA	NA	NA	60.11	NA	23.9	NA	23.10681036	NA	20.3114066	M6	1.471428571	1.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.164	54	91	2	0.021978022	14qA2	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	0.879820857	sgMsh2	cell line
chr14	30565598	30565598	A	C	ENSMUST00000022529.7	1	ENSMUSG00000021957	missense	D/A	183	Tkt	ENSMUST00000022529.7:c.548A>C	ENSMUSP00000022529.6:p.Asp183Ala	H-2-Kb	8	8	4	AIFAINRL	AIFDINRL	NetMHCpan	63.2	123.2	1.949	69	0.058	133.004	297.159	2.234	429.52	121.55	123.2	63.2	314.5864409	164.7175978	279.7306149	144.4574685	M6	1.342857143	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.06	69	801	30	0.037453184	14qB	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	0.321885679	sgMsh2	cell line
chr14	50414187	50414187	A	AT	ENSMUST00000214320.1	5	ENSMUSG00000094692	FS	-/X	214-215	Olfr738	ENSMUST00000214320.1:c.651dup	ENSMUSP00000150067.1:p.Ile218TyrfsTer52	H-2-Kb	8	48	0	CGFSFLWL	NA	SMM	56.982	NA	NA	217	0.166	80.679	NA	NA	NA	235.56	NA	87.1	NA	56.9823033	NA	74.25744462	M6	1.585714286	1.585714286	TRUE	FALSE	FALSE	1	FALSE	0	Strelka2;Vardict	2	0.1659	217	0	0	NA	14qC1	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	0.890013904	sgMsh2	cell line
chr13	84294848	84294848	C	T	ENSMUST00000057495.9	1	ENSMUSG00000035762	missense	L/F	478	Tmem161b	ENSMUST00000057495.9:c.1432C>T	ENSMUSP00000055208.7:p.Leu478Phe	H-2-Kb	8	11	2	GFFYHQYL	GLFYHQYL	NetMHCpan	110.4	348	3.152	103	0.155	251.634	651.008	2.587	1503.26	289.27	348	110.4	747.7217263	254.5305993	554.2937734	248.7367755	M6	0.014285714	0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.173	103	32	3	0.09375	13qC3	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.928103709	sgMsh2	cell line
chr13	116910900	116910900	A	G	ENSMUST00000022239.7	5	ENSMUSG00000021725	missense	L/P	251	Parp8	ENSMUST00000022239.7:c.752T>C	ENSMUSP00000022239.6:p.Leu251Pro	H-2-Kb	8	8	4	IVRPHCSL	IVRLHCSL	SMM	192.637	101.097	0.525	165	0.024	278.151	113.701	0.409	111.86	291	203	380.5	101.0974031	192.6371303	115.5420317	265.3016799	M6	0.057142857	0.157142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.035	165	12	2	0.166666667	13qD2.3	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.187766646	sgMsh2	cell line
chr14	50393400	50393400	AT	A	ENSMUST00000215227.1	5	ENSMUSG00000047716	FS	F/X	215	Olfr736	ENSMUST00000215227.1:c.649del	ENSMUSP00000150611.1:p.Tyr217IlefsTer8	H-2-Kb	8	7	7	IFGTFFIL	IFGTFFYI	SMM	134.816	223.738	1.66	157	0.268	228.095	379.619	1.664	894.35	393.47	535.5	311.4	223.738128	134.8155538	183.9670312	144.7904774	M6	2.228571429	2.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.272	157	0	0	NA	14qC1	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr14	50414187	50414187	A	AT	ENSMUST00000214320.1	5	ENSMUSG00000094692	FS	-/X	214-215	Olfr738	ENSMUST00000214320.1:c.651dup	ENSMUSP00000150067.1:p.Ile218TyrfsTer52	H-2-Kb	8	12	4	FFFYHGVL	FFFIMGSY	SMM	107.83	5517.47	51.168	217	0.166	211.925	6376.27	30.087	7235.07	406.84	13357.6	288.1	5517.470248	107.830098	3790.879676	135.7500506	M6	1.242857143	1.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1659	217	0	0	NA	14qC1	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	0.890013904	sgMsh2	cell line
chr14	21660934	21660934	A	G	ENSMUST00000182405.8	1	ENSMUSG00000021767	missense	T/A	650	Kat6b	ENSMUST00000182405.8:c.1948A>G	ENSMUSP00000138377.1:p.Thr650Ala	H-2-Kb	8	10	2	TALQHLHM	TTLQHLHM	NetMHC	413.65	463.09	1.12	47	0.213	490.709	386.044	0.787	463.09	413.65	393	428.4	357.8821189	553.0189331	379.0879676	599.4321055	M6	0.2	0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.224	47	20	8	0.4	14qA3	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr13	112895502	112895502	T	C	ENSMUST00000022281.4	1	ENSMUSG00000016018	missense	H/R	592	Mtrex	ENSMUST00000022281.4:c.1775A>G	ENSMUSP00000022281.3:p.His592Arg	H-2-Kb	8	5	7	SFYQFQRY	SFYQFQHY	SMMPMBEC	116.075	146.805	1.265	140	0.129	281.85	316.134	1.122	460.58	431.04	1059	1188.1	171.6880231	132.6600022	146.8047136	116.0753495	M6	-1.214285714	-1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.139	140	169	41	0.24260355	13qD2.2	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.745701824	sgMsh2	cell line
chr14	14771285	14771285	A	G	ENSMUST00000057015.7	1	ENSMUSG00000021733	missense	S/G	672	Slc4a7	ENSMUST00000057015.7:c.2014A>G	ENSMUSP00000058313.6:p.Ser672Gly	H-2-Kb	8	10	2	YGVSWGNL	YSVSWGNL	NetMHCpan	215.4	96.8	0.449	198	0.263	353.079	100.846	0.286	88.72	481.4	96.8	215.4	134.8155538	401.5503419	104.8914285	304.6070846	M6	0.285714286	0.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.276	198	107	23	0.214953271	14qA1	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr14	16423715	16423715	CA	C	ENSMUST00000017629.11	1	ENSMUSG00000017485	FS	K/X	1426	Top2b	ENSMUST00000017629.11:c.4282del	ENSMUSP00000017629.4:p.Ser1428ValfsTer41	H-2-Kb	8	44	0	LLFLLHHL	NA	NetMHCpan	100	NA	NA	54	0.148	245.822	NA	NA	NA	510.6	NA	100	NA	284.2758718	NA	207.3671696	M6	1.657142857	1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.164	54	91	2	0.021978022	14qA2	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	0.879820857	sgMsh2	cell line
chr14	50767276	50767276	A	C	ENSMUST00000006451.7	1	ENSMUSG00000006288	missense	L/W	357	Ttc5	ENSMUST00000006451.7:c.1070T>G	ENSMUSP00000006451.6:p.Leu357Trp	H-2-Kb	8	5	7	VPFTFGWV	VPFTFGLV	SMM	58.444	34.893	0.597	94	0.255	289.376	48.781	0.169	58.86	512.57	161.8	603.5	34.89313575	58.44400914	38.70258739	66.18201718	M6	0.885714286	0.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.251	94	42	4	0.095238095	14qC1	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr14	50360968	50360968	CT	C	ENSMUST00000185091.1	2	ENSMUSG00000051969	FS	L/X	137	Tlr11	ENSMUST00000185091.1:c.417del	ENSMUSP00000138814.1:p.Phe139LeufsTer9	H-2-Kb	8	8	6	LQYLFLII	LQYLFFDH	NetMHCpan	189.6	2553.5	13.468	264	0.246	389.759	3288.15	8.436	4022.8	567.16	2553.5	189.6	4273.069928	396.0408646	1376.385219	383.4775994	M6	2.085714286	2.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.251	264	0	0	NA	14qC1	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr14	23436016	23436016	TA	T	ENSMUST00000188285.6	1	ENSMUSG00000063142	FS	Y/X	680	Kcnma1	ENSMUST00000188285.6:c.2038del	ENSMUSP00000140275.1:p.Tyr680ThrfsTer31	H-2-Kb	8	8	4	AFFTARPV	NA	SMM	285.588	NA	NA	59	0.305	464.476	NA	NA	NA	585.6	NA	996.8	NA	285.5880296	NA	343.3523309	M6	0.685714286	0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.325	59	0	0	NA	14qA3	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr14	50393400	50393400	AT	A	ENSMUST00000215227.1	5	ENSMUSG00000047716	FS	F/X	215	Olfr736	ENSMUST00000215227.1:c.649del	ENSMUSP00000150611.1:p.Tyr217IlefsTer8	H-2-Kb	8	8	6	FGTFFILL	FGTFFYII	NetMHCpan	233.4	976.5	4.184	157	0.268	287.949	2952.352	10.253	4758.3	648.51	976.5	233.4	2557.054591	259.8603386	3347.649647	316.0385059	M6	2.371428571	2.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.272	157	0	0	NA	14qC1	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr13	93663296	93663296	C	A	ENSMUST00000015941.7	1	ENSMUSG00000042118	missense	G/W	211	Bhmt2	ENSMUST00000015941.7:c.631G>T	ENSMUSP00000015941.7:p.Gly211Trp	H-2-Kb	8	9	3	RFWPWTSL	RFGPWTSL	SMMPMBEC	321.174	2337.437	7.278	52	0.154	381.821	2469.673	6.468	4511.67	801.43	2457.7	413.1	2481.646968	350.5419514	2337.437461	321.1737185	M6	0.242857143	0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.16	52	0	0	NA	13qC3	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.858361812	sgMsh2	cell line
chr13	84294848	84294848	C	T	ENSMUST00000057495.9	1	ENSMUSG00000035762	missense	L/F	478	Tmem161b	ENSMUST00000057495.9:c.1432C>T	ENSMUSP00000055208.7:p.Leu478Phe	H-2-Kb	9	10	3	FGFFYHQYL	FGLFYHQYL	NetMHCpan	8.2	34.1	4.159	103	0.155	63.013	177.21	2.812	52.25	17.07	34.1	8.2	357.3633412	127.382568	302.1690645	108.9557112	M6	0.014285714	0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.173	103	32	3	0.09375	13qC3	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.928103709	sgMsh2	cell line
chr14	50414187	50414187	A	AT	ENSMUST00000214320.1	5	ENSMUSG00000094692	FS	-/X	214-215	Olfr738	ENSMUST00000214320.1:c.651dup	ENSMUSP00000150067.1:p.Ile218TyrfsTer52	H-2-Kb	9	10	6	VPFFFYHGV	VPFFFIMGS	NetMHC	34.78	2890.6	83.111	217	0.166	77.679	1940.841	24.985	2890.6	34.78	2613.3	43.9	674.6988967	111.4576803	1268.381795	143.9627056	M6	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1659	217	0	0	NA	14qC1	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	0.890013904	sgMsh2	cell line
chr13	104493669	104493669	A	G	ENSMUST00000224208.1	NA	ENSMUSG00000046169	missense	R/G	1107	Adamts6	ENSMUST00000224208.1:c.3319A>G	ENSMUSP00000153359.1:p.Arg1107Gly	H-2-Kb	9	5	7	CSRAYFGQM	CSRAYFRQM	NetMHC	56.05	51.56	0.92	131	0.26	123.245	150.428	1.221	51.56	56.05	80	71	220.8564057	176.6485187	264.3930288	175.4890407	M6	-0.457142857	0.014285714	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.274	131	2	0	0	13qD1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr14	16423715	16423715	CA	C	ENSMUST00000017629.11	1	ENSMUSG00000017485	FS	K/X	1426	Top2b	ENSMUST00000017629.11:c.4282del	ENSMUSP00000017629.4:p.Ser1428ValfsTer41	H-2-Kb	9	18	0	IFFHFLHIL	NA	NetMHCpan	37	NA	NA	54	0.148	73.405	NA	NA	NA	112.16	NA	37	NA	65.48020042	NA	81.32985537	M6	1.614285714	1.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.164	54	91	2	0.021978022	14qA2	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	0.879820857	sgMsh2	cell line
chr14	20409093	20409093	G	A	ENSMUST00000056073.13	1	ENSMUSG00000039543	missense	T/I	734	Cfap70	ENSMUST00000056073.13:c.2201C>T	ENSMUSP00000056869.6:p.Thr734Ile	H-2-Kb	9	11	1	INVIAWTLL	TNVIAWTLL	NetMHCpan	95	296.1	3.117	97	0.278	184.149	351.857	1.911	278.03	122.12	296.1	95	435.622196	254.1616376	407.6148523	246.1784313	M6	2.357142857	2.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.284	97	0	0	NA	14qA3	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr13	112895502	112895502	T	C	ENSMUST00000022281.4	1	ENSMUSG00000016018	missense	H/R	592	Mtrex	ENSMUST00000022281.4:c.1775A>G	ENSMUSP00000022281.3:p.His592Arg	H-2-Kb	9	7	5	YQFQRYRAI	YQFQHYRAI	NetMHCpan	110.6	73.7	0.666	140	0.129	222.659	230.365	1.035	120.91	136.11	73.7	110.6	356.5414284	344.4371603	339.8208329	309.2074862	M6	-0.671428571	-0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.139	140	169	41	0.24260355	13qD2.2	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.745701824	sgMsh2	cell line
chr13	75878849	75878849	T	G	ENSMUST00000022078.11	1	ENSMUSG00000021589	missense	K/N	468	Rhobtb3	ENSMUST00000022078.11:c.1404A>C	ENSMUSP00000022078.5:p.Lys468Asn	H-2-Kb	9	10	2	SNETFLSFL	SKETFLSFL	NetMHC	152.36	2784.6	18.276	175	0.04	305.223	2383.314	7.808	2784.6	152.36	3434.7	227.4	1982.028979	421.8033261	1691.414308	383.0451784	M6	1.171428571	1.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.039	175	45	3	0.066666667	13qC1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.209225692	sgMsh2	cell line
chr14	50393400	50393400	AT	A	ENSMUST00000215227.1	5	ENSMUSG00000047716	FS	F/X	215	Olfr736	ENSMUST00000215227.1:c.649del	ENSMUSP00000150611.1:p.Tyr217IlefsTer8	H-2-Kb	9	7	7	IFGTFFILL	IFGTFFYII	SMM	87.722	342.855	3.908	157	0.268	128.608	558.548	4.343	742.77	165.33	925.1	237.1	342.8546153	87.72229799	374.3260056	91.88613834	M6	2.371428571	2.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.272	157	0	0	NA	14qC1	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr14	30565598	30565598	A	C	ENSMUST00000022529.7	1	ENSMUSG00000021957	missense	D/A	183	Tkt	ENSMUST00000022529.7:c.548A>C	ENSMUSP00000022529.6:p.Asp183Ala	H-2-Kb	9	7	5	VAIFAINRL	VAIFDINRL	NetMHCpan	105.3	537.5	5.104	69	0.058	203.936	485.56	2.381	877.91	173.39	537.5	105.3	433.6206938	234.4822647	361.6179668	276.8534884	M6	1.342857143	2.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.06	69	801	30	0.037453184	14qB	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	0.321885679	sgMsh2	cell line
chr14	50414187	50414187	A	AT	ENSMUST00000214320.1	5	ENSMUSG00000094692	FS	-/X	214-215	Olfr738	ENSMUST00000214320.1:c.651dup	ENSMUSP00000150067.1:p.Ile218TyrfsTer52	H-2-Kb	9	32	0	SSWTKKGLL	NA	NetMHC	218.79	NA	NA	217	0.166	231.98	NA	NA	NA	218.79	NA	241.5	NA	256.5133662	NA	222.4590099	M6	-0.314285714	-0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1659	217	0	0	NA	14qC1	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	0.890013904	sgMsh2	cell line
chr13	84294848	84294848	C	T	ENSMUST00000057495.9	1	ENSMUSG00000035762	missense	L/F	478	Tmem161b	ENSMUST00000057495.9:c.1432C>T	ENSMUSP00000055208.7:p.Leu478Phe	H-2-Kb	9	12	1	FFYHQYLTV	LFYHQYLTV	SMM	182.856	177.873	0.973	103	0.155	249.969	228.71	0.915	259.61	272.82	311.4	457.9	177.8729877	182.8563304	197.8108003	227.1171867	M6	-0.285714286	0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.173	103	32	3	0.09375	13qC3	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.928103709	sgMsh2	cell line
chr14	50360968	50360968	CT	C	ENSMUST00000185091.1	2	ENSMUSG00000051969	FS	L/X	137	Tlr11	ENSMUST00000185091.1:c.417del	ENSMUSP00000138814.1:p.Phe139LeufsTer9	H-2-Kb	9	8	6	LQYLFLIIM	LQYLFFDHH	SMM	108.921	557.327	5.117	264	0.246	221.413	1537.683	6.945	2518.04	289.63	4225.9	983.6	557.3268932	108.9205937	533.6419961	153.196908	M6	2.857142857	2.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.251	264	0	0	NA	14qC1	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr14	29170631	29170631	A	T	ENSMUST00000022567.8	1	ENSMUSG00000021991	missense	F/Y	418	Cacna2d3	ENSMUST00000022567.8:c.1253T>A	ENSMUSP00000022567.7:p.Phe418Tyr	H-2-Kb	9	6	6	ANKGFYTQI	ANKGFFTQI	NetMHCpan	153.5	133	0.866	125	0.088	222.545	313.745	1.41	417.88	298.99	133	153.5	384.6892055	273.5961615	242.8007366	171.4944225	M6	-0.357142857	-0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.082	125	0	0	NA	14qA3	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	0.439910429	sgMsh2	cell line
chr14	16423715	16423715	CA	C	ENSMUST00000017629.11	1	ENSMUSG00000017485	FS	K/X	1426	Top2b	ENSMUST00000017629.11:c.4282del	ENSMUSP00000017629.4:p.Ser1428ValfsTer41	H-2-Kb	9	37	0	TVMKKIPLL	NA	NetMHCpan	237	NA	NA	54	0.148	309.636	NA	NA	NA	303.59	NA	237	NA	328.178405	NA	315.6821313	M6	0.657142857	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.164	54	91	2	0.021978022	14qA2	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	0.879820857	sgMsh2	cell line
chr14	50393400	50393400	AT	A	ENSMUST00000215227.1	5	ENSMUSG00000047716	FS	F/X	215	Olfr736	ENSMUST00000215227.1:c.649del	ENSMUSP00000150611.1:p.Tyr217IlefsTer8	H-2-Kb	9	6	8	LIFGTFFIL	LIFGTFFYI	SMM	143.255	248.949	1.738	157	0.268	231.417	341.288	1.475	398.81	333.22	355.8	255.7	248.9487787	143.2550696	326.7758854	207.1333361	M6	2.228571429	2.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.272	157	0	0	NA	14qC1	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr13	75878849	75878849	T	G	ENSMUST00000022078.11	1	ENSMUSG00000021589	missense	K/N	468	Rhobtb3	ENSMUST00000022078.11:c.1404A>C	ENSMUSP00000022078.5:p.Lys468Asn	H-2-Kb	9	9	3	VSNETFLSF	VSKETFLSF	SMM	343.645	425.706	1.239	175	0.04	405.045	443.114	1.094	688.38	363.15	407.4	540.2	425.7062242	343.6449768	460.5215948	446.9407979	M6	0.128571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.039	175	45	3	0.066666667	13qC1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.209225692	sgMsh2	cell line
chr14	52036009	52036009	A	G	ENSMUST00000214071.1	5	ENSMUSG00000044286	missense	M/T	34	Olfr221	ENSMUST00000214071.1:c.101T>C	ENSMUSP00000150675.1:p.Met34Thr	H-2-Kb	9	6	6	VVFLVTYAI	VVFLVMYAI	NetMHC	404.46	257.9	0.638	83	0.289	474.826	410.59	0.865	257.9	404.46	656.7	462	397.2921646	487.6519891	423.8869047	600.1364431	M6	2.157142857	2.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.305	83	0	0	NA	14qC2	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr13	78163545	78163545	A	G	ENSMUST00000163257.8	5	ENSMUSG00000064138	missense	S/G	382	Fam172a	ENSMUST00000163257.8:c.1144A>G	ENSMUSP00000133140.1:p.Ser382Gly	H-2-Kb	9	7	5	TSWKGFPSI	TSWKSFPSI	NetMHCpan	129	77.4	0.6	33	0.242	443.474	263.364	0.594	180.59	424.3	77.4	129	449.8937915	703.2504197	346.1385739	462.6472659	M6	-0.042857143	-0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.301	33	22	4	0.181818182	13qC1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr13	112895502	112895502	T	C	ENSMUST00000022281.4	1	ENSMUSG00000016018	missense	H/R	592	Mtrex	ENSMUST00000022281.4:c.1775A>G	ENSMUSP00000022281.3:p.His592Arg	H-2-Kb	9	4	8	KSFYQFQRY	KSFYQFQHY	SMM	199.118	214.837	1.079	140	0.129	358.496	409.089	1.141	506.11	438.86	1456.1	1472	214.8374555	199.1177609	312.0685478	278.131386	M6	-1.214285714	-1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.139	140	169	41	0.24260355	13qD2.2	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.745701824	sgMsh2	cell line
chr14	16423715	16423715	CA	C	ENSMUST00000017629.11	1	ENSMUSG00000017485	FS	K/X	1426	Top2b	ENSMUST00000017629.11:c.4282del	ENSMUSP00000017629.4:p.Ser1428ValfsTer41	H-2-Kb	9	17	0	EIFFHFLHI	NA	NetMHCpan	110.4	NA	NA	54	0.148	230.886	NA	NA	NA	520.73	NA	110.4	NA	258.8868552	NA	202.8850284	M6	1.471428571	1.471428571	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.164	54	91	2	0.021978022	14qA2	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	0.879820857	sgMsh2	cell line
chr14	45614188	45614188	T	C	ENSMUST00000087320.12	1	ENSMUSG00000037697	missense	Y/C	511	Ddhd1	ENSMUST00000087320.12:c.1532A>G	ENSMUSP00000084577.5:p.Tyr511Cys	H-2-Kb	9	8	4	IMYCTSPLY	IMYYTSPLY	SMM	100.487	72.629	0.723	128	0.039	436.085	328.486	0.753	479.86	649.71	1452	1280.4	72.6289892	100.4870276	177.1128208	222.4590099	M6	0.085714286	0.642857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.044	128	33	2	0.060606061	14qC1	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	0.236049498	sgMsh2	cell line
chr15	76072463	76072463	A	G	ENSMUST00000100527.12	1	ENSMUSG00000002524	missense	F/L	157	Puf60	ENSMUST00000100527.12:c.469T>C	ENSMUSP00000098096.4:p.Phe157Leu	H-2-Kb	8	4	8	IRQAFAPL	IRQAFAPF	NetMHC	23.31	759.6	32.587	96	0.229	30.786	616.779	20.035	759.6	23.31	901.1	147.5	473.9581548	29.15680954	407.1364636	32.41455024	M6	0.085714286	0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.233	96	183	39	0.213114754	15qD3	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr14	65975611	65975611	T	G	ENSMUST00000022616.13	1	ENSMUSG00000022037	missense	F/V	149	Clu	ENSMUST00000022616.13:c.445T>G	ENSMUSP00000022616.6:p.Phe149Val	H-2-Kb	8	8	4	SSPVYFWM	SSPFYFWM	NetMHCpan	60.6	40.4	0.667	115	0.409	147.752	201.93	1.367	223.25	116.55	40.4	60.6	180.6092545	178.9534189	234.2825811	206.8902384	M6	0.614285714	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.422	115	31288	9717	0.310566351	14qD1	chr14-53294676-123291781	4	3	1	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr14	103177262	103177262	GA	G	ENSMUST00000159855.7	1	ENSMUSG00000033004	FS	F/X	2571	Mycbp2	ENSMUST00000159855.7:c.7713del	ENSMUSP00000124710.1:p.Gln2573ArgfsTer14	H-2-Kb	8	8	6	KAFFPRNL	KAFFPQEP	NetMHCpan	57.6	16323.4	283.392	162	0.241	126.941	20665.292	162.795	19059.57	128.93	16323.4	57.6	22271.01447	124.9510759	33553.66776	167.3940435	M6	0.228571429	0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.256	162	0	0	NA	14qE2.3	chr14-53294676-123291781	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr14	123515710	123515710	C	A	ENSMUST00000000201.6	5	ENSMUSG00000000197	missense	R/I	288	Nalcn	ENSMUST00000000201.6:c.863G>T	ENSMUSP00000000201.5:p.Arg288Ile	H-2-Kb	8	6	6	VFLMYIAI	VFLMYRAI	SMM	80.675	70.265	0.871	94	0.096	117.27	70.672	0.603	62.95	152.93	94.9	239.3	70.26515361	80.67519058	71.07878574	81.60936526	M6	2.571428571	2.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.097	94	0	0	NA	14qE5	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr14	64861558	64861558	CT	C	ENSMUST00000176128.7	5	ENSMUSG00000021972	FS	R/X	219	Hmbox1	ENSMUST00000176128.7:c.655del	ENSMUSP00000135448.1:p.Arg219GlyfsTer18	H-2-Kb	8	17	0	INLRRQTL	NA	NetMHCpan	173.9	NA	NA	233	0.288	256.2	NA	NA	NA	179.94	NA	173.9	NA	332.4604589	NA	378.2160895	M6	-1.3	-1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.294	233	33	2	0.060606061	14qD1	chr14-53294676-123291781	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr15	8228693	8228693	C	T	ENSMUST00000110617.1	5	ENSMUSG00000039801	missense	P/L	2141	Cplane1	ENSMUST00000110617.1:c.6422C>T	ENSMUSP00000106247.1:p.Pro2141Leu	H-2-Kb	8	7	5	ASFPLAPA	ASFPPAPA	SMMPMBEC	236.995	674.124	2.844	47	0.213	262.187	998.639	3.809	1421.37	256	1321.6	326.5	675.6783445	268.3737286	674.1243274	236.9954455	M6	0.885714286	0.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.238	47	11	4	0.363636364	15qA1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr15	78912005	78912005	A	G	ENSMUST00000061239.13	1	ENSMUSG00000022436	missense	N/S	579	Sh3bp1	ENSMUST00000061239.13:c.1736A>G	ENSMUSP00000052181.7:p.Asn579Ser	H-2-Kb	8	12	7	YFFSLASV	YFFSLANV	SMM	176.498	71.902	0.407	95	0.116	240.201	92.114	0.383	99.75	287.32	242.7	429	71.90183929	176.4980859	84.47729517	193.0812048	M6	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.138	95	9	2	0.222222222	15qE1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.740337063	sgMsh2	cell line
chr15	35878713	35878713	A	G	ENSMUST00000048646.8	5	ENSMUSG00000037646	missense	T/A	2953	Vps13b	ENSMUST00000048646.8:c.8857A>G	ENSMUSP00000045490.7:p.Thr2953Ala	H-2-Kb	8	6	6	KPYVRALL	KPYVRTLL	SMMPMBEC	299.047	872.449	2.917	147	0.17	444.969	1488.139	3.344	2139.21	572.44	2069	1065.6	907.277206	317.4972734	872.4489012	299.0473787	M6	0.885714286	0.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.166	147	31	8	0.258064516	15qB3.1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.89055038	sgMsh2	cell line
chr15	8318397	8318397	G	A	ENSMUST00000052965.7	1	ENSMUSG00000022141	missense	T/I	1937	Nipbl	ENSMUST00000052965.7:c.5810C>T	ENSMUSP00000059385.6:p.Thr1937Ile	H-2-Kb	9	11	1	IGYDWFEQL	TGYDWFEQL	NetMHC	9.21	17.53	1.903	148	0.196	24.802	43.785	1.765	17.53	9.21	26.3	12.6	98.19966359	57.29411296	61.27029904	37.00411313	M6	-0.871428571	-0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.205	148	89	18	0.202247191	15qA1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr15	76072463	76072463	A	G	ENSMUST00000100527.12	1	ENSMUSG00000002524	missense	F/L	157	Puf60	ENSMUST00000100527.12:c.469T>C	ENSMUSP00000098096.4:p.Phe157Leu	H-2-Kb	9	3	9	TIRQAFAPL	TIRQAFAPF	NetMHC	20.13	228.85	11.369	96	0.229	160.367	329.743	2.056	228.85	20.13	205.2	65.4	430.63567	255.3347944	470.1646793	271.8003427	M6	0.085714286	0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.233	96	183	39	0.213114754	15qD3	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr15	28378421	28378421	T	C	ENSMUST00000067048.7	5	ENSMUSG00000022262	missense	F/L	2968	Dnah5	ENSMUST00000067048.7:c.8902T>C	ENSMUSP00000069751.6:p.Phe2968Leu	H-2-Kb	9	3	9	QSLTRLASL	QSLTRLASF	NetMHC	48.02	238.26	4.962	117	0.171	133.757	254.704	1.904	238.26	48.02	526.7	122.6	244.4049514	144.9138851	265.0025177	153.196908	M6	1.028571429	1.028571429	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.191	117	0	0	NA	15qB1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr14	57480701	57480701	T	C	ENSMUST00000122063.7	1	ENSMUSG00000040040	missense	M/T	577	Ift88	ENSMUST00000122063.7:c.1730T>C	ENSMUSP00000113768.1:p.Met577Thr	H-2-Kb	9	5	7	QAIEWLTQL	QAIEWLMQL	NetMHC	144.21	130.29	0.903	148	0.061	232.952	219.487	0.942	130.29	144.21	188.3	221.5	250.6744092	244.4049514	289.2344371	260.7654204	M6	0.5	0.5	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.068	148	9	0	0	14qC3	chr14-53294676-123291781	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	0.36480377	sgMsh2	cell line
chr14	56804452	56804452	AT	A	ENSMUST00000173954.2	1	ENSMUSG00000040123	FS	N/X	123	Zmym5	ENSMUST00000173954.2:c.368del	ENSMUSP00000134057.1:p.Asn123MetfsTer18	H-2-Kb	9	8	4	STKMWISPL	NA	NetMHCpan	170.5	NA	NA	83	0.193	280.012	NA	NA	NA	207.45	NA	170.5	NA	447.8267173	NA	352.5737704	M6	0.428571429	0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.224	83	59	5	0.084745763	14qC3	chr14-53294676-123291781	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr14	56761852	56761852	A	C	ENSMUST00000022507.12	1	ENSMUSG00000021938	missense	L/V	316	Pspc1	ENSMUST00000022507.12:c.946T>G	ENSMUSP00000022507.5:p.Leu316Val	H-2-Kb	9	11	1	VMLMRQDLM	LMLMRQDLM	SMM	117.249	337.373	2.877	126	0.413	170.678	505.031	2.959	672.69	215.68	1505.6	463.1	337.3727491	117.2492302	325.2744865	125.6753201	M6	-0.014285714	0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.387	126	36	0	0	14qC3	chr14-53294676-123291781	4	3	1	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr15	74839366	74839366	T	G	ENSMUST00000170259.2	1	ENSMUSG00000075604	missense	K/N	154	Cyp11b1	ENSMUST00000170259.2:c.462A>C	ENSMUSP00000127888.1:p.Lys154Asn	H-2-Kb	9	11	1	NAVQKFVPL	KAVQKFVPL	NetMHCpan	220.9	59.7	0.27	145	0.248	302.852	117.78	0.389	61.28	241.58	59.7	220.9	209.947158	454.0566075	174.2809827	364.1245828	M6	0.857142857	0.857142857	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.252	145	0	0	NA	15qD3	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr14	123515710	123515710	C	A	ENSMUST00000000201.6	5	ENSMUSG00000000197	missense	R/I	288	Nalcn	ENSMUST00000000201.6:c.863G>T	ENSMUSP00000000201.5:p.Arg288Ile	H-2-Kb	9	5	7	WVFLMYIAI	WVFLMYRAI	SMM	126.506	178.694	1.413	94	0.096	190.437	187.572	0.985	117.77	251.38	308	1796.8	178.6940122	126.5056726	196.4490803	129.4941055	M6	2.571428571	2.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.097	94	0	0	NA	14qE5	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr15	76622252	76622252	GT	G	ENSMUST00000078803.4	1	ENSMUSG00000115987	FS	N/X	216	Vps28	ENSMUST00000078803.4:c.647del	ENSMUSP00000077856.3:p.Asn216ThrfsTer?	H-2-Kb	9	5	7	SAYNAFTAS	SAYNAFNRF	SMM	204.226	61.96	0.303	151	0.04	329.815	52.55	0.159	43.14	281.84	34.5	452.4	61.95979897	204.225515	87.54876014	377.7896015	M6	0.014285714	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.05	151	165	1	0.006060606	15qD3	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.268238066	sgMsh2	cell line
chr15	10988924	10988924	T	C	ENSMUST00000070877.6	1	ENSMUSG00000022244	missense	F/L	239	Amacr	ENSMUST00000070877.6:c.715T>C	ENSMUSP00000066915.5:p.Phe239Leu	H-2-Kb	9	7	5	IEPQLYALL	IEPQFYALL	NetMHC	319.08	19.25	0.06	73	0.219	409.155	102.272	0.25	19.25	319.08	89.7	836.6	114.8444468	421.8033261	121.6886295	396.5062159	M6	0.971428571	0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.22	73	19	7	0.368421053	15qA1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr15	58889378	58889378	T	G	ENSMUST00000036904.6	1	ENSMUSG00000037075	missense	L/R	22	Rnf139	ENSMUST00000036904.6:c.65T>G	ENSMUSP00000046467.6:p.Leu22Arg	H-2-Kb	9	7	5	VWAAREVAL	VWAALEVAL	SMM	127.09	314.855	2.477	79	0.291	252.097	659.527	2.616	830.12	321.7	1526	1179.2	314.8545691	127.0895963	488.9337312	182.4945923	M6	0.771428571	0.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.297	79	24	2	0.083333333	15qD1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr15	8186270	8186270	T	C	ENSMUST00000110617.1	5	ENSMUSG00000039801	missense	S/P	437	Cplane1	ENSMUST00000110617.1:c.1309T>C	ENSMUSP00000106247.1:p.Ser437Pro	H-2-Kb	9	6	6	TMLMRPLLL	TMLMRSLLL	SMMPMBEC	167.591	105.986	0.632	181	0.083	198.772	126.543	0.637	157.73	391.88	147.1	226.5	93.13437404	171.044849	105.9863656	167.5907328	M6	1.571428571	1.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.074	181	14	3	0.214285714	15qA1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.396992338	sgMsh2	cell line
chr15	44529215	44529215	G	A	ENSMUST00000209244.1	5	ENSMUSG00000038725	missense	A/T	1649	Pkhd1l1	ENSMUST00000209244.1:c.4945G>A	ENSMUSP00000147447.1:p.Ala1649Thr	H-2-Kb	9	10	2	KTFDRRFVL	KAFDRRFVL	NetMHCpan	135.6	169	1.246	249	0.193	330.834	247.696	0.749	323.78	401.27	169	135.6	255.9234019	352.4601324	239.4693856	309.2074862	M6	0.157142857	0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.198	249	21	5	0.238095238	15qB3.2	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr15	60823463	60823463	A	T	ENSMUST00000100635.4	1	ENSMUSG00000072568	missense	L/M	145	Lratd2	ENSMUST00000100635.4:c.433T>A	ENSMUSP00000098200.3:p.Leu145Met	H-2-Kb	9	8	4	VVHMHRLEV	VVHLHRLEV	NetMHC	414.3	407.58	0.984	53	0.321	438.755	420.67	0.959	407.58	414.3	821.9	739.1	359.0128555	432.6233939	433.7604991	444.8872915	M6	-0.642857143	0.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.341	53	26	8	0.307692308	15qD1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr14	103177262	103177262	GA	G	ENSMUST00000159855.7	1	ENSMUSG00000033004	FS	F/X	2571	Mycbp2	ENSMUST00000159855.7:c.7713del	ENSMUSP00000124710.1:p.Gln2573ArgfsTer14	H-2-Kb	9	9	5	AFFPRNLKL	AFFPQEPKT	NetMHCpan	344.2	14946.7	43.424	162	0.241	446.4	7207.152	16.145	10007.64	580.16	14946.7	344.2	4406.664633	526.1505152	4001.750427	366.6485738	M6	-0.442857143	0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.256	162	0	0	NA	14qE2.3	chr14-53294676-123291781	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr15	44529215	44529215	G	A	ENSMUST00000209244.1	5	ENSMUSG00000038725	missense	A/T	1649	Pkhd1l1	ENSMUST00000209244.1:c.4945G>A	ENSMUSP00000147447.1:p.Ala1649Thr	H-2-Kb	9	11	1	TFDRRFVLL	AFDRRFVLL	SMMPMBEC	285.266	359.129	1.259	249	0.193	470.294	571.727	1.216	726.48	586.5	1323.1	1051.3	416.9749833	354.0870144	359.1286062	285.2659918	M6	0.3	0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.198	249	21	5	0.238095238	15qB3.2	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr15	84122566	84122566	A	G	ENSMUST00000019012.3	1	ENSMUSG00000018868	missense	L/P	72	Pnpla5	ENSMUST00000019012.3:c.215T>C	ENSMUSP00000019012.3:p.Leu72Pro	H-2-Db	9	5	7	FACSNLPDL	FACSNLLDL	SMMPMBEC	83.286	94.748	1.138	60	0.133	155.828	127.686	0.819	151.47	214.69	198.9	265.6	103.9010652	96.96611596	94.74798879	83.28561557	M6	0.1	0.714285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.132	60	0	0	NA	15qE2	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.708148495	sgMsh2	cell line
chr15	83879517	83879517	A	G	ENSMUST00000156187.7	1	ENSMUSG00000022441	missense	F/L	1205	Efcab6	ENSMUST00000156187.7:c.3613T>C	ENSMUSP00000114909.1:p.Phe1205Leu	H-2-Kb	8	4	8	IVQEFENL	IVQEFENF	NetMHC	14.19	459.52	32.383	168	0.25	32.907	530.167	16.111	459.52	14.19	438.8	27.2	627.6824703	38.61357391	600.8139392	47.83436356	M6	-0.457142857	-0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.237	168	0	0	NA	15qE2	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr16	32959460	32959460	T	C	ENSMUST00000135193.8	5	ENSMUSG00000022801	missense	C/R	236	Lrch3	ENSMUST00000135193.8:c.706T>C	ENSMUSP00000130708.1:p.Cys236Arg	H-2-Kb	8	8	4	IPVRYRNL	IPVCYRNL	SMM	25.395	50.089	1.972	87	0.23	26.67	75.164	2.818	92.42	26.87	346.6	278.9	50.08872766	25.39451951	57.90819124	26.4691503	M6	-1.057142857	-0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.221	87	46	9	0.195652174	16qB3	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr15	85816500	85816500	A	G	ENSMUST00000064370.5	NA	ENSMUSG00000052496	missense	V/A	1745	Pkdrej	ENSMUST00000064370.5:c.5234T>C	ENSMUSP00000086352.2:p.Val1745Ala	H-2-Kb	8	5	7	VYHSYGAL	VYHSYGVL	NetMHC	51.44	205.07	3.987	254	0.193	81.16	186.929	2.303	205.07	51.44	153.8	90.3	195.3169797	82.93541077	178.5418375	79.38528349	M6	-0.2	-0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.193	254	0	0	NA	15qE2	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr15	94338749	94338749	A	C	ENSMUST00000035342.10	1	ENSMUSG00000022449	missense	S/A	797	Adamts20	ENSMUST00000035342.10:c.2389T>G	ENSMUSP00000036330.4:p.Ser797Ala	H-2-Kb	8	4	8	AVFEYSGA	AVFEYSGS	NetMHC	141.13	803.55	5.694	87	0.149	224.534	515.987	2.298	803.55	141.13	976.2	228.4	170.1139779	273.9933359	228.4230889	220.6683258	M6	0.4	0.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.149	87	0	0	NA	15qE3	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.799349437	sgMsh2	cell line
chr15	100190056	100190056	T	C	ENSMUST00000100203.9	1	ENSMUSG00000023026	missense	V/A	957	Dip2b	ENSMUST00000100203.9:c.2870T>C	ENSMUSP00000097777.3:p.Val957Ala	H-2-Kb	8	7	5	ASVMAGNL	ASVMVGNL	NetMHC	249.4	155.85	0.625	172	0.058	304.177	234.725	0.772	155.85	249.4	254.3	361	261.0597994	332.4604589	215.149331	275.892567	M6	1	1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.059	172	25	1	0.04	15qF1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.316520918	sgMsh2	cell line
chr16	3592523	3592523	GA	G	ENSMUST00000216259.1	5	ENSMUSG00000051003	FS	G/X	42	Olfr161	ENSMUST00000216259.1:c.128del	ENSMUSP00000150825.1:p.Asn43ThrfsTer46	H-2-Kb	8	47	0	LSLRYWPF	NA	NetMHCpan	130.4	NA	NA	141	0.064	210.41	NA	NA	NA	465.62	NA	130.4	NA	248.7367755	NA	172.0838049	M6	-0.357142857	-0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.06	141	0	0	NA	16qA1	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr16	32961669	32961669	A	G	ENSMUST00000135193.8	5	ENSMUSG00000022801	missense	Y/C	271	Lrch3	ENSMUST00000135193.8:c.812A>G	ENSMUSP00000130708.1:p.Tyr271Cys	H-2-Kb	8	5	7	KIHIFKCL	KIHIFKYL	SMMPMBEC	256.886	92.628	0.361	218	0.037	319.381	76.184	0.239	59.74	598.73	59.4	324.9	102.9769442	313.8629122	92.62751223	256.8857419	M6	1.571428571	1.571428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.042	218	48	1	0.020833333	16qB3	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.225319976	sgMsh2	cell line
chr15	100312997	100312997	AG	A	ENSMUST00000067752.4	1	ENSMUSG00000054619	FS	G/X	168	Mettl7a1	ENSMUST00000067752.4:c.505del	ENSMUSP00000065271.3:p.Ala169LeufsTer36	H-2-Kb	8	36	0	LSGSFFLM	NA	NetMHCpan	303	NA	NA	229	0.214	470.002	NA	NA	NA	668.95	NA	303	NA	546.6885777	NA	393.3145385	M6	1.328571429	1.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.22	229	38	0	0	15qF1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr16	32959460	32959460	T	C	ENSMUST00000135193.8	5	ENSMUSG00000022801	missense	C/R	236	Lrch3	ENSMUST00000135193.8:c.706T>C	ENSMUSP00000130708.1:p.Cys236Arg	H-2-Kb	9	7	5	VIPVRYRNL	VIPVCYRNL	NetMHC	4.32	5.83	1.35	87	0.23	39.398	84.597	2.147	5.83	4.32	35.5	30.7	133.6934098	48.0961153	179.9906727	63.8631006	M6	-1.057142857	0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.221	87	46	9	0.195652174	16qB3	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr15	85816500	85816500	A	G	ENSMUST00000064370.5	NA	ENSMUSG00000052496	missense	V/A	1745	Pkdrej	ENSMUST00000064370.5:c.5234T>C	ENSMUSP00000086352.2:p.Val1745Ala	H-2-Kb	9	4	8	WVYHSYGAL	WVYHSYGVL	NetMHC	52.34	145.67	2.783	254	0.193	78.726	132.471	1.683	145.67	52.34	123	69.5	141.9416992	100.7186741	108.9557112	87.95286685	M6	-0.2	-0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.193	254	0	0	NA	15qE2	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr16	16262686	16262686	C	T	ENSMUST00000039408.2	1	ENSMUSG00000041957	missense	T/I	612	Pkp2	ENSMUST00000039408.2:c.1835C>T	ENSMUSP00000036890.2:p.Thr612Ile	H-2-Kb	9	8	4	RNYIQEASL	RNYTQEASL	NetMHCpan	98.4	119	1.209	137	0.248	155.481	189.736	1.22	136.19	102.46	119	98.4	243.2820126	208.5018919	276.216743	236.1837425	M6	0.142857143	0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.222	137	128	36	0.28125	16qA2	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr16	32959460	32959460	T	C	ENSMUST00000135193.8	5	ENSMUSG00000022801	missense	C/R	236	Lrch3	ENSMUST00000135193.8:c.706T>C	ENSMUSP00000130708.1:p.Cys236Arg	H-2-Kb	9	10	2	VRYRNLRHL	VCYRNLRHL	NetMHC	134.72	74.69	0.554	87	0.23	264.699	138.58	0.524	74.69	134.72	91.7	491.7	220.8564057	228.6177783	185.4598909	300.7807237	M6	-1.342857143	-1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.221	87	46	9	0.195652174	16qB3	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr16	33975874	33975874	A	G	ENSMUST00000076810.11	5	ENSMUSG00000061751	missense	L/P	2846	Kalrn	ENSMUST00000076810.11:c.8537T>C	ENSMUSP00000076088.5:p.Leu2846Pro	H-2-Kb	9	6	6	LTYVMPSGV	LTYVMLSGV	NetMHC	188	49.73	0.265	117	0.256	325.494	137.237	0.422	49.73	188	141.7	338.3	132.7730709	312.6871254	185.033345	441.8247089	M6	0.885714286	0.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.248	117	2	1	0.5	16qB3	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr16	21937998	21937998	T	G	ENSMUST00000023562.8	1	ENSMUSG00000022856	missense	S/R	124	Tmem41a	ENSMUST00000023562.8:c.370A>C	ENSMUSP00000023562.7:p.Ser124Arg	H-2-Kb	9	9	3	LSRLFGKQL	LSSLFGKQL	NetMHC	258.33	976.86	3.781	64	0.094	469.166	1017.143	2.168	976.86	258.33	813.4	435.7	1442.480663	590.3505878	1057.426037	502.6318444	M6	-0.271428571	0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.103	64	32	3	0.09375	16qB1	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.552570416	sgMsh2	cell line
chr16	3592523	3592523	GA	G	ENSMUST00000216259.1	5	ENSMUSG00000051003	FS	G/X	42	Olfr161	ENSMUST00000216259.1:c.128del	ENSMUSP00000150825.1:p.Asn43ThrfsTer46	H-2-Kb	9	39	0	WMYASPPPL	NA	NetMHCpan	187.9	NA	NA	141	0.064	209.738	NA	NA	NA	330.1	NA	187.9	NA	192.357888	NA	227.1171867	M6	-0.185714286	-0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.06	141	0	0	NA	16qA1	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr16	17342352	17342352	T	C	ENSMUST00000023450.14	1	ENSMUSG00000022766	missense	V/A	371	Serpind1	ENSMUST00000023450.14:c.1112T>C	ENSMUSP00000023450.6:p.Val371Ala	H-2-Kb	9	5	7	TNRTREALL	TNRTREVLL	SMMPMBEC	176.299	238.919	1.355	110	0.227	291.863	432.697	1.483	594.93	396.18	2092.8	1411.6	270.4643321	187.5469475	238.9186213	176.2990613	M6	-0.542857143	-0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.243	110	2	0	0	16qA3	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr17	3453370	3453370	T	G	ENSMUST00000072156.6	1	ENSMUSG00000023800	missense	F/V	941	Tiam2	ENSMUST00000072156.6:c.2821T>G	ENSMUSP00000072020.6:p.Phe941Val	H-2-Db	9	4	8	HQHLNRIVI	HQHLNRIFI	NetMHC	52.68	34.23	0.65	311	0.196	177.453	103.995	0.586	34.23	52.68	102.4	240	105.5893217	162.7871051	145.4018727	192.1188596	M6	0.828571429	0.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.198	311	9	2	0.222222222	17qA1	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr16	70492004	70492004	A	G	ENSMUST00000163832.7	5	ENSMUSG00000022707	missense	Y/C	469	Gbe1	ENSMUST00000163832.7:c.1406A>G	ENSMUSP00000132603.1:p.Tyr469Cys	H-2-Db	9	4	8	YTLTNRRCL	YTLTNRRYL	NetMHC	57.62	16.28	0.283	278	0.252	263.904	44.932	0.17	16.28	57.62	25.8	169.2	64.06487749	358.6080216	77.90583738	381.5662905	M6	-0.442857143	-0.442857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.251	278	8	1	0.125	16qC2	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr16	36615278	36615278	A	G	ENSMUST00000089620.10	1	ENSMUSG00000022901	missense	L/P	259	Cd86	ENSMUST00000089620.10:c.776T>C	ENSMUSP00000087047.4:p.Leu259Pro	H-2-Db	9	4	8	VALLLVMPL	VALLLVMLL	SMM	119.845	386.029	3.221	108	0.204	259.265	1602.2	6.18	2784.09	391.89	5782.3	529.9	386.0290606	119.8450221	420.3102682	126.639737	M6	2.814285714	3.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.202	108	0	0	NA	16qB3	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr17	19812337	19812337	C	A	ENSMUST00000172203.1	5	ENSMUSG00000091771	missense	T/N	791	Vmn2r103	ENSMUST00000172203.1:c.2372C>A	ENSMUSP00000126756.1:p.Thr791Asn	H-2-Db	9	7	5	CVWVNFLPV	CVWVTFLPV	SMM	162.787	7899.871	48.529	343	0.257	365.39	9389.201	25.696	10878.53	567.26	12089.5	717.2	7899.871007	162.7871051	7154.346992	163.5196692	M6	1.285714286	1.871428571	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.254	343	0	0	NA	17qA3.2	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr16	37818952	37818952	T	C	ENSMUST00000114763.2	1	ENSMUSG00000022816	missense	Y/H	71	Fstl1	ENSMUST00000114763.2:c.211T>C	ENSMUSP00000110411.2:p.Tyr71His	H-2-Db	9	9	3	KTHLNHCEL	KTYLNHCEL	NetMHCpan	269.5	150.1	0.557	111	0.225	479.168	336.922	0.703	635.98	663.95	150.1	269.5	368.6548909	458.7963984	305.1897897	499.53969	M6	-0.471428571	-0.471428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.218	111	0	0	NA	16qB3	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr17	21262216	21262216	A	T	ENSMUST00000236821.1	NA	ENSMUSG00000050102	missense	I/L	268	Vmn1r235	ENSMUST00000236821.1:c.802A>T	ENSMUSP00000158023.1:p.Ile268Leu	H-2-Kb	8	4	8	STFMLCYL	STFMLCYI	NetMHC	17.34	131.75	7.598	247	0.17	25.435	157.647	6.198	131.75	17.34	66.9	18.9	220.1608027	33.94220093	183.5439188	31.96980594	M6	1.828571429	1.828571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.164	247	0	0	NA	17qA3.2	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.879820857	sgMsh2	cell line
chr16	44488543	44488543	G	A	ENSMUST00000114634.2	1	ENSMUSG00000022687	missense	P/S	869	Boc	ENSMUST00000114634.2:c.2605C>T	ENSMUSP00000110281.2:p.Pro869Ser	H-2-Kb	8	7	5	VTFISFCL	VTFIPFCL	NetMHCpan	30.7	45.3	1.476	53	0.113	56.284	73.896	1.313	58.72	48.78	45.3	30.7	89.07175307	63.788149	101.5640475	72.56713881	M6	2.128571429	2.185714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.131	53	0	0	NA	16qB4	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.702783733	sgMsh2	cell line
chr17	19812337	19812337	C	A	ENSMUST00000172203.1	5	ENSMUSG00000091771	missense	T/N	791	Vmn2r103	ENSMUST00000172203.1:c.2372C>A	ENSMUSP00000126756.1:p.Thr791Asn	H-2-Kb	8	8	4	VWVNFLPV	VWVTFLPV	NetMHC	75.65	99.44	1.314	343	0.257	162.833	141.568	0.869	99.44	75.65	190.6	182	146.1302072	162.4575876	137.0061303	163.2074578	M6	1.285714286	1.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.254	343	0	0	NA	17qA3.2	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr17	18277423	18277423	T	A	ENSMUST00000172190.3	5	ENSMUSG00000090417	missense	D/V	29	Vmn2r94	ENSMUST00000172190.3:c.86A>T	ENSMUSP00000126386.2:p.Asp29Val	H-2-Kb	8	11	1	VNYVQYNF	DNYVQYNF	NetMHCpan	60.6	3963.3	65.401	134	0.209	102.319	3678.76	35.954	5001.49	77.07	3963.3	60.6	2258.083514	127.5674869	3394.220093	183.9670312	M6	-0.871428571	-0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.205	134	0	0	NA	17qA3.2	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr17	25299878	25299878	A	G	ENSMUST00000037453.3	1	ENSMUSG00000056399	missense	K/R	278	Prss34	ENSMUST00000037453.3:c.833A>G	ENSMUSP00000045672.2:p.Lys278Arg	H-2-Kb	8	7	5	VSWIRCYV	VSWIKCYV	NetMHCpan	83.8	156.6	1.869	156	0.212	200.65	344.633	1.718	284	140.84	156.6	83.8	470.6954498	307.4255792	405.2658414	260.4593785	M6	0.528571429	0.528571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.206	156	0	0	NA	17qA3.3	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr16	58926453	58926453	T	C	ENSMUST00000205986.3	2	ENSMUSG00000090951	missense	I/M	39	Olfr181	ENSMUST00000205986.3:c.117A>G	ENSMUSP00000145877.2:p.Ile39Met	H-2-Kb	8	5	7	AIYLVTMV	AIYLVTIV	NetMHC	143.87	786.44	5.466	284	0.074	259.507	804.095	3.099	786.44	143.87	1131.3	680.2	620.4974485	238.6382195	821.7505435	280.3754606	M6	2.371428571	2.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.075	284	0	0	NA	16qC1.3	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.402357099	sgMsh2	cell line
chr16	64926197	64926197	G	A	ENSMUST00000063076.5	1	ENSMUSG00000050783	missense	S/F	244	Htr1f	ENSMUST00000063076.5:c.731C>T	ENSMUSP00000063136.4:p.Ser244Phe	H-2-Kb	8	7	5	LVSTFYML	LVSTSYML	NetMHCpan	110.1	3406	30.936	178	0.174	233.792	5453.403	23.326	4857.02	174.67	3406	110.1	6049.785825	318.2291802	6349.506908	292.9139126	M6	1.414285714	1.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.179	178	0	0	NA	16qC1.3	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.960292277	sgMsh2	cell line
chr16	95295629	95295629	A	C	ENSMUST00000113862.7	1	ENSMUSG00000062609	missense	S/R	37	Kcnj15	ENSMUST00000113862.7:c.109A>C	ENSMUSP00000109493.1:p.Ser37Arg	H-2-Kb	8	7	5	LGMSRAPL	LGMSSAPL	NetMHC	207.08	176.94	0.854	100	0.06	301.698	266.937	0.885	176.94	207.08	236.2	220.8	417.5802981	680.361923	297.6733808	382.5956254	M6	0.028571429	0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.072	100	0	0	NA	16qC4	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.386262815	sgMsh2	cell line
chr16	63773391	63773391	C	CA	ENSMUST00000064405.7	1	ENSMUSG00000052504	FS	L/FX	111	Epha3	ENSMUST00000064405.7:c.332dup	ENSMUSP00000066554.6:p.Leu111PhefsTer11	H-2-Kb	8	9	3	IPFGFGDL	NA	SMMPMBEC	51.968	NA	NA	86	0.314	131.126	NA	NA	NA	209.44	NA	512	NA	52.8128981	NA	51.96847826	M6	0.5	0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.303	86	0	0	NA	16qC1.3	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr16	44488543	44488543	G	A	ENSMUST00000114634.2	1	ENSMUSG00000022687	missense	P/S	869	Boc	ENSMUST00000114634.2:c.2605C>T	ENSMUSP00000110281.2:p.Pro869Ser	H-2-Kb	8	5	7	IIVTFISF	IIVTFIPF	NetMHC	210.94	98.54	0.467	53	0.113	229.301	115.038	0.502	98.54	210.94	114.8	217.2	158.7596015	327.8989304	115.2762924	241.4015198	M6	2.471428571	2.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.131	53	0	0	NA	16qB4	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.702783733	sgMsh2	cell line
chr16	52189136	52189136	CT	C	ENSMUST00000114471.2	1	ENSMUSG00000022637	FS	L/X	807	Cblb	ENSMUST00000114471.2:c.2423del	ENSMUSP00000110115.1:p.Phe808SerfsTer98	H-2-Kb	8	24	0	VAKFHCLL	NA	NetMHCpan	79.3	NA	NA	33	0.182	328.685	NA	NA	NA	228.09	NA	79.3	NA	429.2793522	NA	518.4895408	M6	1.085714286	1.142857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.211	33	27	0	0	16qB5	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr17	24891473	24891473	T	A	ENSMUST00000168265.7	1	ENSMUSG00000024160	missense	Y/N	425	Spsb3	ENSMUST00000168265.7:c.1273T>A	ENSMUSP00000126878.1:p.Tyr425Asn	H-2-Kb	8	5	7	SSTSLQNL	SSTSLQYL	SMM	212.687	370.459	1.742	65	0.2	273.05	497.39	1.822	490.42	240.79	1191.4	724.7	370.458872	212.686537	504.3592613	305.3092764	M6	-0.242857143	-0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.193	65	59	11	0.186440678	17qA3.3	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr16	58915901	58915901	GA	G	ENSMUST00000171656.2	2	ENSMUSG00000090629	FS	S/X	247	Olfr180	ENSMUST00000171656.2:c.739del	ENSMUSP00000128358.1:p.Ser247LeufsTer31	H-2-Kb	8	31	0	KTYQWLYF	NA	NetMHCpan	200.7	NA	NA	199	0.06	382.912	NA	NA	NA	489.31	NA	200.7	NA	445.3895263	NA	320.4350395	M6	-0.157142857	-0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.053	199	0	0	NA	16qC1.2	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.28433235	sgMsh2	cell line
chr16	58915901	58915901	GA	G	ENSMUST00000171656.2	2	ENSMUSG00000090629	FS	S/X	247	Olfr180	ENSMUST00000171656.2:c.739del	ENSMUSP00000128358.1:p.Ser247LeufsTer31	H-2-Kb	8	29	0	VIKTYQWL	NA	SMM	154.433	NA	NA	199	0.06	282.366	NA	NA	NA	556.53	NA	386.6	NA	154.4329616	NA	178.1312026	M6	-0.285714286	-0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.053	199	0	0	NA	16qC1.2	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.28433235	sgMsh2	cell line
chr17	12272077	12272077	A	G	ENSMUST00000089058.6	1	ENSMUSG00000014426	missense	C/R	156	Map3k4	ENSMUST00000089058.6:c.466T>C	ENSMUSP00000086459.5:p.Cys156Arg	H-2-Kb	8	11	1	RSFMLDSV	CSFMLDSV	NetMHCpan	473.9	556.1	1.173	161	0.106	487.941	747.923	1.533	1073.08	736.27	556.1	473.9	683.502331	499.7352678	812.3440428	476.1458462	M6	1.085714286	1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.126	161	32	2	0.0625	17qA1	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.675959927	sgMsh2	cell line
chr17	20540614	20540614	G	T	ENSMUST00000167093.2	5	ENSMUSG00000090572	missense	P/H	827	Vmn2r109	ENSMUST00000167093.2:c.2480C>A	ENSMUSP00000132641.1:p.Pro827His	H-2-Kb	8	5	7	LGFIFAHK	LGFIFAPK	SMMPMBEC	60.22	40.902	0.679	252	0.19	399.253	288.671	0.723	784.23	932.66	508.2	692.4	69.1416915	106.106014	40.90157201	60.21989584	M6	0.628571429	1.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.198	252	0	0	NA	17qA3.2	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr16	44488543	44488543	G	A	ENSMUST00000114634.2	1	ENSMUSG00000022687	missense	P/S	869	Boc	ENSMUST00000114634.2:c.2605C>T	ENSMUSP00000110281.2:p.Pro869Ser	H-2-Kb	8	10	2	ISFCLWRA	IPFCLWRA	SMMPMBEC	286.246	2059.397	7.194	53	0.113	448.016	4103.472	9.159	14967.77	2420.96	6010.4	565.1	2196.544469	330.9329418	2059.396641	286.246378	M6	0.671428571	1.057142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.131	53	0	0	NA	16qB4	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.702783733	sgMsh2	cell line
chr16	70495379	70495379	GA	G	ENSMUST00000163832.7	5	ENSMUSG00000022707	FS	E/X	533	Gbe1	ENSMUST00000163832.7:c.1599del	ENSMUSP00000132603.1:p.Gly534AlafsTer36	H-2-Kb	9	13	0	ISISWVMSL	NA	NetMHC	16.3	NA	NA	193	0.145	93.705	NA	NA	NA	16.3	NA	19.1	NA	168.310031	NA	180.8214719	M6	1.7	1.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.141	193	12	0	0	16qC2	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.756431347	sgMsh2	cell line
chr16	36615278	36615278	A	G	ENSMUST00000089620.10	1	ENSMUSG00000022901	missense	L/P	259	Cd86	ENSMUST00000089620.10:c.776T>C	ENSMUSP00000087047.4:p.Leu259Pro	H-2-Kb	9	4	8	VALLLVMPL	VALLLVMLL	NetMHC	63.11	150.8	2.389	108	0.204	124.012	228.193	1.84	150.8	63.11	354.9	84.3	208.5018919	163.7231154	247.8848587	177.9303365	M6	2.814285714	3.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.202	108	0	0	NA	16qB3	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr17	13225949	13225949	T	C	ENSMUST00000080647.4	1	ENSMUSG00000073458	missense	C/R	138	Smok2a	ENSMUST00000080647.4:c.412T>C	ENSMUSP00000094432.2:p.Cys138Arg	H-2-Kb	9	8	4	INYRHNQGI	INYCHNQGI	NetMHCpan	30	54.9	1.83	1109	0.014	105.887	125.761	1.188	188.04	80.78	54.9	30	133.6934098	144.9138851	117.8284053	130.9935766	M6	-1.7	-1.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.014	1109	0	0	NA	17qA1	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.075106659	sgMsh2	cell line
chr16	70495379	70495379	GA	G	ENSMUST00000163832.7	5	ENSMUSG00000022707	FS	E/X	533	Gbe1	ENSMUST00000163832.7:c.1599del	ENSMUSP00000132603.1:p.Gly534AlafsTer36	H-2-Kb	9	15	0	ISWVMSLGI	NA	NetMHCpan	153.2	NA	NA	193	0.145	220.364	NA	NA	NA	164.6	NA	153.2	NA	276.1277156	NA	353.3865369	M6	1.757142857	1.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.141	193	12	0	0	16qC2	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.756431347	sgMsh2	cell line
chr17	19812337	19812337	C	A	ENSMUST00000172203.1	5	ENSMUSG00000091771	missense	T/N	791	Vmn2r103	ENSMUST00000172203.1:c.2372C>A	ENSMUSP00000126756.1:p.Thr791Asn	H-2-Kb	9	8	4	VWVNFLPVF	VWVTFLPVF	SMM	97.524	101.184	1.038	343	0.257	160.102	200.409	1.252	253.84	177.89	795.3	731	101.1835704	97.52366186	146.9772103	142.3147781	M6	1.814285714	1.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.254	343	0	0	NA	17qA3.2	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr17	21262216	21262216	A	T	ENSMUST00000236821.1	NA	ENSMUSG00000050102	missense	I/L	268	Vmn1r235	ENSMUST00000236821.1:c.802A>T	ENSMUSP00000158023.1:p.Ile268Leu	H-2-Kb	9	4	8	STFMLCYLI	STFMLCYII	NetMHC	193.55	530.74	2.742	247	0.17	380.177	659.855	1.736	530.74	193.55	586.7	292.5	733.0101696	467.8536263	736.6310144	477.8042407	M6	2.571428571	2.571428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.164	247	0	0	NA	17qA3.2	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.879820857	sgMsh2	cell line
chr16	52189136	52189136	CT	C	ENSMUST00000114471.2	1	ENSMUSG00000022637	FS	L/X	807	Cblb	ENSMUST00000114471.2:c.2423del	ENSMUSP00000110115.1:p.Phe808SerfsTer98	H-2-Kb	9	23	0	QVAKFHCLL	NA	NetMHCpan	182.2	NA	NA	33	0.182	246.304	NA	NA	NA	221.52	NA	182.2	NA	271.0878168	NA	463.713778	M6	1.085714286	1.142857143	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.211	33	27	0	0	16qB5	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr17	19812337	19812337	C	A	ENSMUST00000172203.1	5	ENSMUSG00000091771	missense	T/N	791	Vmn2r103	ENSMUST00000172203.1:c.2372C>A	ENSMUSP00000126756.1:p.Thr791Asn	H-2-Kb	9	7	5	CVWVNFLPV	CVWVTFLPV	NetMHC	225.74	335.96	1.488	343	0.257	373.645	454.543	1.217	335.96	225.74	1083.8	583.7	309.8203926	301.3769268	573.1258538	445.9128626	M6	1.285714286	1.871428571	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.254	343	0	0	NA	17qA3.2	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr16	52189136	52189136	CT	C	ENSMUST00000114471.2	1	ENSMUSG00000022637	FS	L/X	807	Cblb	ENSMUST00000114471.2:c.2423del	ENSMUSP00000110115.1:p.Phe808SerfsTer98	H-2-Kb	9	12	1	SFFLQIPFL	NA	NetMHCpan	171.2	NA	NA	33	0.182	315.8	NA	NA	NA	279.95	NA	171.2	NA	351.6494966	NA	481.1162215	M6	1.8	1.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.211	33	27	0	0	16qB5	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr16	52189136	52189136	CT	C	ENSMUST00000114471.2	1	ENSMUSG00000022637	FS	L/X	807	Cblb	ENSMUST00000114471.2:c.2423del	ENSMUSP00000110115.1:p.Phe808SerfsTer98	H-2-Kb	9	11	2	LSFFLQIPF	NA	SMMPMBEC	213.919	NA	NA	33	0.182	221.659	NA	NA	NA	297.87	NA	214.7	NA	228.6177783	NA	213.9193154	M6	1.657142857	1.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.211	33	27	0	0	16qB5	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr17	19053653	19053653	C	A	ENSMUST00000170424.2	5	ENSMUSG00000096717	missense	S/Y	54	Vmn2r98	ENSMUST00000170424.2:c.161C>A	ENSMUSP00000131261.1:p.Ser54Tyr	H-2-Kb	9	7	5	HTFYYLKKM	HTFYSLKKM	NetMHCpan	162.4	2676.5	16.481	158	0.032	315.655	1812.209	5.741	2171.47	303.78	2676.5	162.4	1432.550696	345.2311699	1452.947761	327.5291816	M6	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.036	158	0	0	NA	17qA3.2	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.193131408	sgMsh2	cell line
chr16	64926197	64926197	G	A	ENSMUST00000063076.5	1	ENSMUSG00000050783	missense	S/F	244	Htr1f	ENSMUST00000063076.5:c.731C>T	ENSMUSP00000063136.4:p.Ser244Phe	H-2-Kb	9	10	2	TFYMLEKSL	TSYMLEKSL	NetMHCpan	295.4	99.7	0.338	178	0.174	314.513	130.789	0.416	100.05	304.5	99.7	295.4	180.3474475	333.5108752	161.5288124	324.526376	M6	-1.27E-16	-1.27E-16	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.179	178	0	0	NA	16qC1.3	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.960292277	sgMsh2	cell line
chr16	58915901	58915901	GA	G	ENSMUST00000171656.2	2	ENSMUSG00000090629	FS	S/X	247	Olfr180	ENSMUST00000171656.2:c.739del	ENSMUSP00000128358.1:p.Ser247LeufsTer31	H-2-Kb	9	31	0	KTYQWLYFI	NA	NetMHCpan	171.2	NA	NA	199	0.06	384.332	NA	NA	NA	307.23	NA	171.2	NA	461.4344339	NA	521.4948213	M6	0.585714286	0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.053	199	0	0	NA	16qC1.2	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.28433235	sgMsh2	cell line
chr16	44488543	44488543	G	A	ENSMUST00000114634.2	1	ENSMUSG00000022687	missense	P/S	869	Boc	ENSMUST00000114634.2:c.2605C>T	ENSMUSP00000110281.2:p.Pro869Ser	H-2-Kb	9	7	5	VTFISFCLW	VTFIPFCLW	SMMPMBEC	254.83	300.781	1.18	53	0.113	360.434	355.033	0.985	342.69	342.33	859.5	564.4	367.3753391	378.5384504	300.7807237	254.8296748	M6	2.1	2.185714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.131	53	0	0	NA	16qB4	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.702783733	sgMsh2	cell line
chr17	19812337	19812337	C	A	ENSMUST00000172203.1	5	ENSMUSG00000091771	missense	T/N	791	Vmn2r103	ENSMUST00000172203.1:c.2372C>A	ENSMUSP00000126756.1:p.Thr791Asn	H-2-Kb	9	4	8	VFFCVWVNF	VFFCVWVTF	SMMPMBEC	208.089	249.029	1.197	343	0.257	303.189	414.473	1.367	540.47	364.77	2015	1419.2	288.4762076	241.607271	249.0290432	208.0894201	M6	1.728571429	2.828571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.254	343	0	0	NA	17qA3.2	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr16	43982105	43982105	A	G	ENSMUST00000036174.9	1	ENSMUSG00000036292	missense	F/L	443	Gramd1c	ENSMUST00000036174.9:c.1327T>C	ENSMUSP00000036739.3:p.Phe443Leu	H-2-Kb	9	5	7	IMLQKTLDL	IMLQKTFDL	SMMPMBEC	261.367	256.596	0.982	114	0.211	403.129	347.19	0.861	400.54	478.08	556.5	644	293.8393807	328.178405	256.5960697	261.3665468	M6	-0.028571429	0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.221	114	13	2	0.153846154	16qB4	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr17	25299878	25299878	A	G	ENSMUST00000037453.3	1	ENSMUSG00000056399	missense	K/R	278	Prss34	ENSMUST00000037453.3:c.833A>G	ENSMUSP00000045672.2:p.Lys278Arg	H-2-Kb	9	4	8	MSYVSWIRC	MSYVSWIKC	SMMPMBEC	410.44	619.798	1.51	156	0.212	483.38	914.881	1.893	1246.75	517.21	889.8	451.4	939.9613579	515.3591605	619.7977567	410.4403034	M6	0.528571429	0.971428571	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.206	156	0	0	NA	17qA3.3	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr16	58926453	58926453	T	C	ENSMUST00000205986.3	2	ENSMUSG00000090951	missense	I/M	39	Olfr181	ENSMUST00000205986.3:c.117A>G	ENSMUSP00000145877.2:p.Ile39Met	H-2-Kb	9	3	9	FSAIYLVTM	FSAIYLVTI	SMM	339.711	641.372	1.888	284	0.074	388.31	695.236	1.79	910.5	521.58	749.1	436.8	641.3720055	339.7113053	579.7623384	339.8208329	M6	2.028571429	2.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.075	284	0	0	NA	16qC1.3	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.402357099	sgMsh2	cell line
chr17	56632320	56632320	T	G	ENSMUST00000112979.3	1	ENSMUSG00000040828	missense	F/V	50	Catsperd	ENSMUST00000112979.3:c.148T>G	ENSMUSP00000108603.2:p.Phe50Val	H-2-Db	9	5	7	YAFPNTVVL	YAFPNTFVL	NetMHCpan	9.1	7.6	0.835	160	0.225	33.615	30.922	0.92	12.57	10.27	7.6	9.1	49.27424743	62.03260224	49.83907806	56.96000254	M6	1.314285714	1.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.215	160	1	1	1	17qD	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr17	78934740	78934740	G	A	ENSMUST00000024885.9	1	ENSMUSG00000024081	missense	P/L	495	Cebpz	ENSMUST00000024885.9:c.1484C>T	ENSMUSP00000024885.8:p.Pro495Leu	H-2-Db	9	3	9	LTGVNRAYL	LTGVNRAYP	NetMHC	219.87	18677.21	84.947	178	0.185	301.794	8814.504	29.207	18677.21	219.87	13900.2	363.9	3661.170885	308.7592661	3728.807814	294.8288646	M6	0.014285714	0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.195	178	197	31	0.157360406	17qE3	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr17	43450308	43450308	G	T	ENSMUST00000113599.1	5	ENSMUSG00000056492	missense	G/W	965	Adgrf5	ENSMUST00000113599.1:c.2893G>T	ENSMUSP00000109229.1:p.Gly965Trp	H-2-Db	9	4	8	FSLANNTWG	FSLANNTGG	SMMPMBEC	238.545	894.479	3.75	194	0.052	358.662	2507.529	6.991	9490.48	300.82	3154.6	501.4	1860.458556	416.5047897	894.4786932	238.5448253	M6	-0.485714286	-0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.06	194	29	0	0	17qB3	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.321885679	sgMsh2	cell line
chr17	78934740	78934740	G	A	ENSMUST00000024885.9	1	ENSMUSG00000024081	missense	P/L	495	Cebpz	ENSMUST00000024885.9:c.1484C>T	ENSMUSP00000024885.8:p.Pro495Leu	H-2-Kb	8	8	4	RAYLYSQI	RAYPYSQI	NetMHC	6.83	14.98	2.193	178	0.185	27.013	58.558	2.168	14.98	6.83	23.2	10.9	93.91608928	49.28786429	99.0238939	43.12608157	M6	0.457142857	0.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.195	178	197	31	0.157360406	17qE3	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr17	37701005	37701005	AT	A	ENSMUST00000213732.1	5	ENSMUSG00000059964	FS	F/X	112	Olfr119	ENSMUST00000213732.1:c.339del	ENSMUSP00000150099.1:p.Phe113LeufsTer3	H-2-Kb	8	5	8	QMFFFTFL	QMFFFTFF	NetMHCpan	9.9	98.7	9.97	437	0.039	18.421	250.269	13.586	184.5	17.4	98.7	9.9	316.0385059	19.44195797	349.7357273	27.84453695	M6	2.314285714	2.314285714	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.041	437	0	0	NA	17qB1	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.219955214	sgMsh2	cell line
chr17	88635346	88635346	AC	A	ENSMUST00000064035.12	2	ENSMUSG00000033855	FS	T/X	60	Ston1	ENSMUST00000064035.12:c.184del	ENSMUSP00000067027.6:p.Leu62CysfsTer155	H-2-Kb	8	137	0	VALPRSPL	NA	NetMHC	91.85	NA	NA	52	0.173	178.821	NA	NA	NA	91.85	NA	120.1	NA	237.5417764	NA	281.6696149	M6	0.128571429	0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.187	52	55	2	0.036363636	17qE4	chr17-87745782-94740433	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr17	42592968	42592968	TA	T	ENSMUST00000068355.7	1	ENSMUSG00000043972	FS	Y/X	159	Opn5	ENSMUST00000068355.7:c.475del	ENSMUSP00000063542.6:p.Tyr159MetfsTer43	H-2-Kb	8	5	7	LAVIWAML	LAVIWAYA	NetMHCpan	147.2	3567.3	24.234	61	0.049	206.513	4062.47	19.672	6717.72	182.49	3567.3	147.2	4557.639811	321.1737185	2604.593785	230.5366617	M6	2.442857143	2.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.066	61	0	0	NA	17qB3	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.354074247	sgMsh2	cell line
chr17	88635346	88635346	AC	A	ENSMUST00000064035.12	2	ENSMUSG00000033855	FS	T/X	60	Ston1	ENSMUST00000064035.12:c.184del	ENSMUSP00000067027.6:p.Leu62CysfsTer155	H-2-Kb	8	91	0	ATPTLSPL	NA	NetMHC	192.35	NA	NA	52	0.173	286.809	NA	NA	NA	192.35	NA	353.4	NA	275.2580317	NA	298.3595888	M6	0.314285714	0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.187	52	55	2	0.036363636	17qE4	chr17-87745782-94740433	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr17	88635346	88635346	AC	A	ENSMUST00000064035.12	2	ENSMUSG00000033855	FS	T/X	60	Ston1	ENSMUST00000064035.12:c.184del	ENSMUSP00000067027.6:p.Leu62CysfsTer155	H-2-Kb	8	118	0	SSNIFRTI	NA	SMM	189.121	NA	NA	52	0.173	211.601	NA	NA	NA	219.62	NA	223.5	NA	189.1211064	NA	203.5822922	M6	0.328571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.187	52	55	2	0.036363636	17qE4	chr17-87745782-94740433	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr17	40228805	40228805	A	G	ENSMUST00000026499.5	1	ENSMUSG00000025433	missense	V/A	167	Crisp3	ENSMUST00000026499.5:c.500T>C	ENSMUSP00000026499.5:p.Val167Ala	H-2-Kb	8	10	2	YACRYCPV	YVCRYCPV	SMMPMBEC	174.478	161.339	0.925	426	0.04	239.579	312.449	1.304	429.13	286.52	494.4	303	195.7672319	192.6371303	161.3392375	174.4777291	M6	0.514285714	0.514285714	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;Vardict	3	0.048	426	1	0	0	17qB2	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.257508544	sgMsh2	cell line
chr17	37672151	37672151	G	A	ENSMUST00000216551.1	5	ENSMUSG00000080990	missense	V/I	43	Olfr118	ENSMUST00000216551.1:c.127G>A	ENSMUSP00000151212.1:p.Val43Ile	H-2-Kb	8	11	1	ISLTGNAL	VSLTGNAL	SMMPMBEC	167.009	171.293	1.026	589	0.214	244.445	226.992	0.929	282.69	306.61	583	591.8	170.8991883	182.2804114	171.2931516	167.0090478	M6	0.571428571	0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.211	589	0	0	NA	17qB1	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr17	88635346	88635346	AC	A	ENSMUST00000064035.12	2	ENSMUSG00000033855	FS	T/X	60	Ston1	ENSMUST00000064035.12:c.184del	ENSMUSP00000067027.6:p.Leu62CysfsTer155	H-2-Kb	8	71	0	WVPHYYLL	NA	SMMPMBEC	249.885	NA	NA	52	0.173	283.87	NA	NA	NA	334.69	NA	300.6	NA	267.1406633	NA	249.8848923	M6	0.628571429	0.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.187	52	55	2	0.036363636	17qE4	chr17-87745782-94740433	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr17	38304994	38304994	T	C	ENSMUST00000213505.1	5	ENSMUSG00000054940	missense	T/A	156	Olfr137	ENSMUST00000213505.1:c.466A>G	ENSMUSP00000150173.1:p.Thr156Ala	H-2-Kb	8	7	5	CGFTASAL	CGFTTSAL	SMM	193.972	284.931	1.469	156	0.026	240.585	312.177	1.298	583.32	395.88	277.8	199.5	284.9311953	193.9724271	339.4220093	281.6696149	M6	1.185714286	1.185714286	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.035	156	0	0	NA	17qB1	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.187766646	sgMsh2	cell line
chr17	86168897	86168897	T	A	ENSMUST00000097275.8	1	ENSMUSG00000045038	missense	F/Y	102	Prkce	ENSMUST00000097275.8:c.305T>A	ENSMUSP00000094874.2:p.Phe102Tyr	H-2-Kb	8	7	5	CTIQYEEL	CTIQFEEL	NetMHCpan	215.2	148.3	0.689	57	0.298	326.052	254.206	0.78	274.13	397.36	148.3	215.2	234.2825811	287.5676312	296.9887511	364.5356443	M6	-0.6	-0.6	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.311	57	13	2	0.153846154	17qE4	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr17	37751964	37751964	A	G	ENSMUST00000174675.3	5	ENSMUSG00000060017	missense	I/V	37	Olfr121	ENSMUST00000174675.3:c.109A>G	ENSMUSP00000133865.3:p.Ile37Val	H-2-Kb	8	4	8	CFLLFTLV	CFLLFTLI	SMM	253.945	461.041	1.816	476	0.042	479.578	724.227	1.51	850.4	581.81	2002	2533.9	461.0414792	253.9451951	598.0534499	377.3462166	M6	2.928571429	2.928571429	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.045	476	0	0	NA	17qB1	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.24141426	sgMsh2	cell line
chr17	37701005	37701005	AT	A	ENSMUST00000213732.1	5	ENSMUSG00000059964	FS	F/X	112	Olfr119	ENSMUST00000213732.1:c.339del	ENSMUSP00000150099.1:p.Phe113LeufsTer3	H-2-Kb	9	4	9	TQMFFFTFL	TQMFFFTFF	NetMHCpan	14.3	117.3	8.203	437	0.039	93.963	252.605	2.688	250.38	40.61	117.3	14.3	271.7127388	161.1053638	254.8296748	147.3160278	M6	2.314285714	2.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.041	437	0	0	NA	17qB1	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.219955214	sgMsh2	cell line
chr17	88635346	88635346	AC	A	ENSMUST00000064035.12	2	ENSMUSG00000033855	FS	T/X	60	Ston1	ENSMUST00000064035.12:c.184del	ENSMUSP00000067027.6:p.Leu62CysfsTer155	H-2-Kb	9	127	0	LSPTHFGKM	NA	NetMHC	86.5	NA	NA	52	0.173	150.318	NA	NA	NA	86.5	NA	87.7	NA	321.4474612	NA	212.9364454	M6	-0.728571429	-0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.187	52	55	2	0.036363636	17qE4	chr17-87745782-94740433	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr17	37751964	37751964	A	G	ENSMUST00000174675.3	5	ENSMUSG00000060017	missense	I/V	37	Olfr121	ENSMUST00000174675.3:c.109A>G	ENSMUSP00000133865.3:p.Ile37Val	H-2-Kb	9	11	1	VLLMFLVSL	ILLMFLVSL	NetMHC	127.87	166.59	1.303	476	0.042	185.568	235.147	1.267	166.59	127.87	243.7	206.3	294.5167504	200.0368468	226.5948317	171.0999962	M6	2.785714286	3.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.045	476	0	0	NA	17qB1	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.24141426	sgMsh2	cell line
chr17	37701005	37701005	AT	A	ENSMUST00000213732.1	5	ENSMUSG00000059964	FS	F/X	112	Olfr119	ENSMUST00000213732.1:c.339del	ENSMUSP00000150099.1:p.Phe113LeufsTer3	H-2-Kb	9	5	8	QMFFFTFLV	QMFFFTFFG	SMM	56.378	416.016	7.379	437	0.039	130.663	1702.349	13.029	3181.25	152.62	2823.6	205	416.0159675	56.37804345	581.0988286	108.7051201	M6	2.642857143	2.642857143	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.041	437	0	0	NA	17qB1	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.219955214	sgMsh2	cell line
chr17	37672151	37672151	G	A	ENSMUST00000216551.1	5	ENSMUSG00000080990	missense	V/I	43	Olfr118	ENSMUST00000216551.1:c.127G>A	ENSMUSP00000151212.1:p.Val43Ile	H-2-Kb	9	5	7	ILLMFLISL	ILLMFLVSL	NetMHC	178.03	166.59	0.936	589	0.214	269.327	235.147	0.873	166.59	178.03	243.7	345.5	294.5167504	288.4762076	226.5948317	250.1785091	M6	2.828571429	3.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.211	589	0	0	NA	17qB1	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr17	52803436	52803436	A	T	ENSMUST00000039366.10	1	ENSMUSG00000035580	missense	D/V	225	Kcnh8	ENSMUST00000039366.10:c.674A>T	ENSMUSP00000049206.9:p.Asp225Val	H-2-Kb	9	11	1	VWLILLATF	DWLILLATF	SMM	135.553	1135.298	8.375	123	0.057	214.01	2398.994	11.21	2900.19	235.6	8323.6	1924	1135.298333	135.5532704	1897.798067	192.4199068	M6	2.828571429	3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.056	123	0	0	NA	17qC	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.300426634	sgMsh2	cell line
chr17	52803436	52803436	A	T	ENSMUST00000039366.10	1	ENSMUSG00000035580	missense	D/V	225	Kcnh8	ENSMUST00000039366.10:c.674A>T	ENSMUSP00000049206.9:p.Asp225Val	H-2-Kb	9	8	4	AGWVWLILL	AGWDWLILL	NetMHC	250.15	340.78	1.362	123	0.057	316.462	417.941	1.321	340.78	250.15	554.3	1111.8	436.6264089	308.3968972	399.2546657	324.526376	M6	2.614285714	2.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.056	123	0	0	NA	17qC	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.300426634	sgMsh2	cell line
chr17	56632320	56632320	T	G	ENSMUST00000112979.3	1	ENSMUSG00000040828	missense	F/V	50	Catsperd	ENSMUST00000112979.3:c.148T>G	ENSMUSP00000108603.2:p.Phe50Val	H-2-Kb	9	3	9	LFYAFPNTV	LFYAFPNTF	NetMHCpan	233	338.6	1.453	160	0.225	281.738	333.442	1.184	338.69	258.61	338.6	233	228.6177783	304.8667072	328.2842143	424.864065	M6	0.242857143	0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.215	160	1	1	1	17qD	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr17	88635346	88635346	AC	A	ENSMUST00000064035.12	2	ENSMUSG00000033855	FS	T/X	60	Ston1	ENSMUST00000064035.12:c.184del	ENSMUSP00000067027.6:p.Leu62CysfsTer155	H-2-Kb	9	90	0	VATPTLSPL	NA	NetMHC	312.28	NA	NA	52	0.173	386.535	NA	NA	NA	312.28	NA	453.1	NA	319.9705442	NA	504.9518876	M6	0.314285714	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.187	52	55	2	0.036363636	17qE4	chr17-87745782-94740433	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr17	88635346	88635346	AC	A	ENSMUST00000064035.12	2	ENSMUSG00000033855	FS	T/X	60	Ston1	ENSMUST00000064035.12:c.184del	ENSMUSP00000067027.6:p.Leu62CysfsTer155	H-2-Kb	9	52	0	CFILFQSVL	NA	SMM	343.645	NA	NA	52	0.173	482.676	NA	NA	NA	403.98	NA	734.2	NA	343.6449768	NA	561.3710342	M6	2.114285714	2.114285714	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.187	52	55	2	0.036363636	17qE4	chr17-87745782-94740433	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr17	88635346	88635346	AC	A	ENSMUST00000064035.12	2	ENSMUSG00000033855	FS	T/X	60	Ston1	ENSMUST00000064035.12:c.184del	ENSMUSP00000067027.6:p.Leu62CysfsTer155	H-2-Kb	9	119	0	SNIFRTIVL	NA	NetMHCpan	157.2	NA	NA	52	0.173	224.462	NA	NA	NA	444.48	NA	157.2	NA	239.3922023	NA	209.5318271	M6	2.085714286	2.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.187	52	55	2	0.036363636	17qE4	chr17-87745782-94740433	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr17	88635346	88635346	AC	A	ENSMUST00000064035.12	2	ENSMUSG00000033855	FS	T/X	60	Ston1	ENSMUST00000064035.12:c.184del	ENSMUSP00000067027.6:p.Leu62CysfsTer155	H-2-Kb	9	101	0	SVLQKTLAL	NA	NetMHCpan	446.3	NA	NA	52	0.173	477.108	NA	NA	NA	458.64	NA	446.3	NA	495.5756965	NA	529.9684305	M6	0.728571429	0.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.187	52	55	2	0.036363636	17qE4	chr17-87745782-94740433	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr18	37680939	37680939	G	T	ENSMUST00000192931.1	1	ENSMUSG00000103037	missense	S/I	161	Pcdhgb1	ENSMUST00000192931.1:c.482G>T	ENSMUSP00000141348.1:p.Ser161Ile	H-2-Db	9	3	9	NSLKMYTVI	NSLKMYTVS	NetMHC	158.89	19903.22	125.264	246	0.65	356.594	9153.28	25.669	19903.22	158.89	14990.9	524.3	2996.539453	391.3992598	3315.660076	321.7881152	M6	1.214285714	1.214285714	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.656	246	10	0	0	18qB3	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr18	37021442	37021442	T	C	ENSMUST00000047614.3	1	ENSMUSG00000103310	missense	Y/H	405	Pcdha12	ENSMUST00000047614.3:c.1213T>C	ENSMUSP00000047609.1:p.Tyr405His	H-2-Db	9	5	7	STFKNYHSL	STFKNYYSL	NetMHCpan	36.5	34.8	0.953	193	0.052	221.131	155.833	0.705	81.22	180.1	34.8	36.5	270.7821299	272.659102	230.4464382	262.162156	M6	-0.871428571	-0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.057	193	0	0	NA	18qB2	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.305791395	sgMsh2	cell line
chr19	5098235	5098235	T	C	ENSMUST00000025805.7	1	ENSMUSG00000024873	missense	Y/C	10	Cnih2	ENSMUST00000025805.7:c.29A>G	ENSMUSP00000025805.6:p.Tyr10Cys	H-2-Db	9	6	5	AAFCCMLTL	AAFCYMLTL	SMMPMBEC	440.119	894.479	2.032	43	0.163	494.788	867.569	1.753	1600.52	609.92	660.3	527.6	840.6592577	461.9766231	894.4786932	440.1188809	M6	2.371428571	2.442857143	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.179	43	0	0	NA	19qA	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr18	75519813	75519813	T	C	ENSMUST00000165559.2	5	ENSMUSG00000052928	missense	K/E	458	Ctif	ENSMUST00000165559.2:c.1372A>G	ENSMUSP00000129974.1:p.Lys458Glu	H-2-Kb	8	5	7	FAFTAAEL	FAFTAAKL	NetMHC	81.29	76.52	0.941	50	0.08	124.469	90.585	0.728	76.52	81.29	76	111.3	104.6501849	137.6385219	105.6185011	153.0171117	M6	1.114285714	1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.081	50	13	0	0	18qE3	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.434545667	sgMsh2	cell line
chr18	87756730	87756730	C	G	ENSMUST00000091776.6	NA	ENSMUSG00000069324	missense	P/A	126	Gm5096	ENSMUST00000091776.6:c.376C>G	ENSMUSP00000135956.1:p.Pro126Ala	H-2-Kb	8	7	5	VSQTASYL	VSQTPSYL	SMM	109.582	165.859	1.514	294	0.272	131.957	250.56	1.899	264.67	114.38	836.3	352.8	165.8593656	109.5821962	236.4503711	149.534017	M6	-0.214285714	-0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.275	294	0	0	NA	18qE4	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr18	31682054	31682054	A	C	ENSMUST00000025109.7	1	ENSMUSG00000024260	missense	N/H	609	Sap130	ENSMUST00000025109.7:c.1825A>C	ENSMUSP00000025109.7:p.Asn609His	H-2-Kb	8	9	3	ISHPFSAA	ISNPFSAA	NetMHC	134.4	659.05	4.904	85	0.047	206.767	468.108	2.264	659.05	134.4	1102	235.8	257.4779247	213.6682534	277.1660292	199.8664966	M6	6.34E-17	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.053	85	41	0	0	18qB1	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.28433235	sgMsh2	cell line
chr19	5655062	5655062	A	G	ENSMUST00000071857.12	1	ENSMUSG00000056917	missense	F/L	502	Sipa1	ENSMUST00000071857.12:c.1504T>C	ENSMUSP00000073618.5:p.Phe502Leu	H-2-Kb	8	4	8	ANADFRAL	ANADFRAF	SMM	145.794	2369.954	16.255	110	0.109	201.668	2632.782	13.055	4044.23	265.27	1742.8	172.8	2369.954455	145.794117	2895.609548	230.5366617	M6	-0.185714286	-0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.113	110	17	1	0.058823529	19qA	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr18	34425065	34425065	T	C	ENSMUST00000014647.8	1	ENSMUSG00000014503	missense	F/L	266	Pkd2l2	ENSMUST00000014647.8:c.796T>C	ENSMUSP00000014647.7:p.Phe266Leu	H-2-Kb	8	7	5	TSWQLYSV	TSWQFYSV	NetMHCpan	224.1	15.8	0.071	134	0.216	243.655	18.534	0.076	8.36	286.6	15.8	224.1	24.70244836	260.4593785	21.2686537	226.8506354	M6	0.1	0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.214	134	0	0	NA	18qB1	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr18	37021442	37021442	T	C	ENSMUST00000047614.3	1	ENSMUSG00000103310	missense	Y/H	405	Pcdha12	ENSMUST00000047614.3:c.1213T>C	ENSMUSP00000047609.1:p.Tyr405His	H-2-Kb	8	8	4	KNYHSLVL	KNYYSLVL	NetMHCpan	150	57	0.38	193	0.052	428.416	356.888	0.833	345.02	673.56	57	150	368.7567681	366.2182643	518.4895408	490.6140712	M6	0.428571429	0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.057	193	0	0	NA	18qB2	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.305791395	sgMsh2	cell line
chr18	37473936	37473936	T	C	ENSMUST00000050034.2	NA	ENSMUSG00000047033	missense	F/L	74	Pcdhb15	ENSMUST00000050034.2:c.220T>C	ENSMUSP00000059598.1:p.Phe74Leu	H-2-Kb	8	10	2	RLLLLSPL	RFLLLSPL	SMMPMBEC	429.279	192.637	0.449	82	0.049	459.126	249.124	0.543	305.61	971.72	348.4	437.7	163.5836898	480.5515695	192.6371303	429.2793522	M6	2.371428571	2.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.062	82	0	0	NA	18qB3	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.332615202	sgMsh2	cell line
chr18	37021442	37021442	T	C	ENSMUST00000047614.3	1	ENSMUSG00000103310	missense	Y/H	405	Pcdha12	ENSMUST00000047614.3:c.1213T>C	ENSMUSP00000047609.1:p.Tyr405His	H-2-Kb	8	6	6	TFKNYHSL	TFKNYYSL	SMM	267.756	194.42	0.726	193	0.052	366.723	239.62	0.653	359	1171.72	262.6	447.2	194.4195797	267.7564861	216.6406749	286.246378	M6	-0.871428571	-0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.057	193	0	0	NA	18qB2	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.305791395	sgMsh2	cell line
chr18	37021442	37021442	T	C	ENSMUST00000047614.3	1	ENSMUSG00000103310	missense	Y/H	405	Pcdha12	ENSMUST00000047614.3:c.1213T>C	ENSMUSP00000047609.1:p.Tyr405His	H-2-Kb	9	5	7	STFKNYHSL	STFKNYYSL	NetMHCpan	15.4	13.9	0.903	193	0.052	61.313	45.651	0.745	16.12	22.6	13.9	15.4	75.18132925	100.0253316	87.34740358	104.5321782	M6	-0.871428571	-0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.057	193	0	0	NA	18qB2	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.305791395	sgMsh2	cell line
chr19	5655062	5655062	A	G	ENSMUST00000071857.12	1	ENSMUSG00000056917	missense	F/L	502	Sipa1	ENSMUST00000071857.12:c.1504T>C	ENSMUSP00000073618.5:p.Phe502Leu	H-2-Kb	9	4	8	ANADFRALL	ANADFRAFL	NetMHC	68.93	102.13	1.482	110	0.109	144.716	251.549	1.738	102.13	68.93	70.4	70.6	400.9682638	218.831582	458.4056903	275.5814621	M6	0.857142857	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.113	110	17	1	0.058823529	19qA	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr19	5026119	5026119	A	G	ENSMUST00000236152.1	NA	ENSMUSG00000024891	missense	N/S	68	Slc29a2	ENSMUST00000236152.1:c.203A>G	ENSMUSP00000157780.1:p.Asn68Ser	H-2-Kb	9	7	5	FNFNSWVTL	FNFNNWVTL	NetMHCpan	92.5	81.4	0.88	159	0.157	139.525	113.18	0.811	76.92	107.16	81.4	92.5	172.6275075	200.4979793	144.9606074	171.8897579	M6	0.7	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.181	159	13	1	0.076923077	19qA	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr18	37302556	37302556	A	G	ENSMUST00000051754.1	NA	ENSMUSG00000045498	missense	Q/R	525	Pcdhb3	ENSMUST00000051754.1:c.1574A>G	ENSMUSP00000059180.1:p.Gln525Arg	H-2-Kb	9	11	1	RAFEFHVGA	QAFEFHVGA	NetMHCpan	110.2	284.7	2.583	249	0.04	481.759	390.709	0.811	172.28	176.02	284.7	110.2	496.7181164	857.254947	579.7623384	787.4989801	M6	0.642857143	0.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.044	249	0	0	NA	18qB3	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.236049498	sgMsh2	cell line
chr18	34425065	34425065	T	C	ENSMUST00000014647.8	1	ENSMUSG00000014503	missense	F/L	266	Pkd2l2	ENSMUST00000014647.8:c.796T>C	ENSMUSP00000014647.7:p.Phe266Leu	H-2-Kb	9	8	4	SWQLYSVKL	SWQFYSVKL	NetMHC	179.84	220.95	1.229	134	0.216	295.887	262.711	0.888	220.95	179.84	256.2	341.1	269.2216614	250.6744092	353.3865369	371.7491635	M6	0.328571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.214	134	0	0	NA	18qB1	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr19	5026119	5026119	A	G	ENSMUST00000236152.1	NA	ENSMUSG00000024891	missense	N/S	68	Slc29a2	ENSMUST00000236152.1:c.203A>G	ENSMUSP00000157780.1:p.Asn68Ser	H-2-Kb	9	11	1	SWVTLLSQL	NWVTLLSQL	NetMHC	203.93	1456.57	7.142	159	0.157	278.863	1336.728	4.793	1456.57	203.93	1841.7	356.6	1096.755952	254.1616376	1216.886295	303.5638135	M6	1.514285714	1.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.181	159	13	1	0.076923077	19qA	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr18	37680939	37680939	G	T	ENSMUST00000192931.1	1	ENSMUSG00000103037	missense	S/I	161	Pcdhgb1	ENSMUST00000192931.1:c.482G>T	ENSMUSP00000141348.1:p.Ser161Ile	H-2-Kb	9	10	2	VIPNPHFSL	VSPNPHFSL	NetMHC	211.65	119.37	0.564	246	0.65	410.119	267.215	0.652	119.37	211.65	107.8	235.3	415.0591573	584.9382211	522.696991	774.9077422	M6	-0.585714286	0.228571429	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.656	246	10	0	0	18qB3	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr18	63106236	63106236	A	G	ENSMUST00000047480.12	1	ENSMUSG00000041482	missense	Y/H	758	Piezo2	ENSMUST00000047480.12:c.2272T>C	ENSMUSP00000040019.5:p.Tyr758His	H-2-Kb	9	11	1	HQFENFPGL	YQFENFPGL	NetMHC	224.35	73.89	0.329	72	0.264	340.194	176.67	0.519	73.89	224.35	81	253.7	272.3391013	426.6875784	329.7995054	557.5065832	M6	0.057142857	0.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.277	72	0	0	NA	18qE1	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr18	75230060	75230060	A	G	ENSMUST00000039608.8	1	ENSMUSG00000035765	missense	N/S	545	Dym	ENSMUST00000039608.8:c.1634A>G	ENSMUSP00000047054.7:p.Asn545Ser	H-2-Kb	9	11	1	SSLHHNPNL	NSLHHNPNL	NetMHCpan	126.1	1041.7	8.261	156	0.25	216.613	1010.719	4.666	2904.31	228.11	1041.7	126.1	979.7381063	227.0439846	826.5135921	206.1816449	M6	-1.057142857	-1.057142857	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.257	156	82	19	0.231707317	18qE3	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr18	63106236	63106236	A	G	ENSMUST00000047480.12	1	ENSMUSG00000041482	missense	Y/H	758	Piezo2	ENSMUST00000047480.12:c.2272T>C	ENSMUSP00000040019.5:p.Tyr758His	H-2-Kb	9	5	7	LIFIYTHQF	LIFIYTYQF	NetMHCpan	147.6	417.1	2.826	72	0.264	209.18	182.911	0.874	177.41	232.9	417.1	147.6	188.4126249	250.6744092	154.9708446	185.4598909	M6	0.2	1.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.277	72	0	0	NA	18qE1	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr19	5098235	5098235	T	C	ENSMUST00000025805.7	1	ENSMUSG00000024873	missense	Y/C	10	Cnih2	ENSMUST00000025805.7:c.29A>G	ENSMUSP00000025805.6:p.Tyr10Cys	H-2-Kb	9	6	5	AAFCCMLTL	AAFCYMLTL	NetMHCpan	250.3	16.7	0.067	43	0.163	277.598	69.978	0.252	55.38	282.77	16.7	250.3	100.2559138	335.8226621	84.57655669	272.4269072	M6	2.371428571	2.442857143	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.179	43	0	0	NA	19qA	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr18	75519813	75519813	T	C	ENSMUST00000165559.2	5	ENSMUSG00000052928	missense	K/E	458	Ctif	ENSMUST00000165559.2:c.1372A>G	ENSMUSP00000129974.1:p.Lys458Glu	H-2-Kb	9	3	9	RSFAFTAAE	RSFAFTAAK	SMM	476.552	1897.186	3.981	50	0.08	497.378	1583.55	3.184	1412.21	511.42	1327.6	1067	1897.186388	476.5516746	1754.890407	483.3369531	M6	0.971428571	1.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.081	50	13	0	0	18qE3	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.434545667	sgMsh2	cell line
chr19	5770781	5770781	GA	G	ENSMUST00000236978.1	NA	ENSMUSG00000024941	FS	F/X	65	Scyl1	ENSMUST00000236978.1:c.194del	ENSMUSP00000157476.1:p.Phe65SerfsTer28	H-2-Db	9	8	4	KAASNASKL	NA	NetMHC	168.17	NA	NA	137	0.044	326.882	NA	NA	NA	168.17	NA	236.3	NA	417.4649324	NA	585.5581095	M6	-0.228571429	-0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.048	137	202	1	0.004950495	19qA	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr19	41232352	41232352	CA	C	ENSMUST00000237871.1	NA	ENSMUSG00000025016	FS	F/X	390	Tm9sf3	ENSMUST00000237871.1:c.1170del	ENSMUSP00000158318.1:p.Phe390LeufsTer18	H-2-Db	9	19	0	ASVSLLSFL	NA	NetMHC	310.91	NA	NA	207	0.179	402.645	NA	NA	NA	310.91	NA	997.3	NA	371.2102845	NA	434.0802235	M6	2.4	2.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.175	207	1158	1	0.000863558	19qC3	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.938833232	sgMsh2	cell line
chr19	25171612	25171612	A	G	ENSMUST00000025831.7	1	ENSMUSG00000052085	missense	T/A	1485	Dock8	ENSMUST00000025831.7:c.4453A>G	ENSMUSP00000025831.6:p.Thr1485Ala	H-2-Kb	8	5	7	LTHCFAAL	LTHCFATL	NetMHC	13.46	20.98	1.559	138	0.123	24.126	31.465	1.304	20.98	13.46	18.6	21.6	49.28786429	29.63056959	41.95077612	26.65262568	M6	1.257142857	1.257142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.132	138	5	0	0	19qB	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.708148495	sgMsh2	cell line
chr19	13502426	13502426	A	G	ENSMUST00000217001.1	2	ENSMUSG00000071629	missense	I/V	28	Olfr1477	ENSMUST00000217001.1:c.82A>G	ENSMUSP00000149565.1:p.Ile28Val	H-2-Kb	8	11	1	VIFTLIYL	IIFTLIYL	SMM	15.267	16.283	1.067	642	0.016	17.014	18.256	1.073	19.54	16.62	27.2	23.8	16.2832091	15.26651821	16.97227266	17.40764414	M6	2.485714286	2.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.019	642	0	0	NA	19qA	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.101930465	sgMsh2	cell line
chr19	10207246	10207246	T	G	ENSMUST00000040372.13	1	ENSMUSG00000036372	missense	F/V	66	Tmem258	ENSMUST00000040372.13:c.196T>G	ENSMUSP00000044751.7:p.Phe66Val	H-2-Kb	8	11	1	VGVLFLLL	FGVLFLLL	NetMHC	19.2	194.49	10.13	212	0.024	37.169	178.287	4.797	194.49	19.2	271.5	29.8	162.0839455	44.53895263	157.666708	44.53895263	M6	3.114285714	3.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.031	212	363	10	0.027548209	19qA	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.166307601	sgMsh2	cell line
chr19	44153684	44153684	A	G	ENSMUST00000042026.4	1	ENSMUSG00000037578	missense	V/A	545	Pkd2l1	ENSMUST00000042026.4:c.1634T>C	ENSMUSP00000045675.4:p.Val545Ala	H-2-Kb	8	8	4	VTYAFFVF	VTYVFFVF	NetMHC	23.26	20.43	0.878	204	0.118	26.478	27.127	1.024	20.43	23.26	46.7	23.8	29.49442949	30.74255792	24.75939338	29.15680954	M6	1.771428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.127	204	0	0	NA	19qC3	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.681324688	sgMsh2	cell line
chr19	25409764	25409764	T	C	ENSMUST00000049400.14	5	ENSMUSG00000032702	missense	V/A	239	Kank1	ENSMUST00000049400.14:c.716T>C	ENSMUSP00000042177.8:p.Val239Ala	H-2-Kb	8	9	3	SSARHSPL	SSVRHSPL	NetMHC	29.15	10.11	0.347	183	0.142	49.084	28.486	0.58	10.11	29.15	53.9	118.6	27.27344509	40.52658414	29.69887511	57.64212727	M6	-0.757142857	-0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.127	183	38	6	0.157894737	19qB	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.681324688	sgMsh2	cell line
chr19	44973627	44973627	T	C	ENSMUST00000096053.4	1	ENSMUSG00000036097	missense	I/T	1081	Slf2	ENSMUST00000096053.4:c.3242T>C	ENSMUSP00000093758.3:p.Ile1081Thr	H-2-Kb	8	8	4	LTYTLLHL	LTYILLHL	NetMHCpan	21.4	34.2	1.598	471	0.025	46.318	52.591	1.135	36.2	30.3	34.2	21.4	74.08665723	69.6209588	68.98267002	62.33615346	M6	0.785714286	0.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.026	471	107	5	0.046728972	19qC3	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.139483794	sgMsh2	cell line
chr19	10207246	10207246	T	G	ENSMUST00000040372.13	1	ENSMUSG00000036372	missense	F/V	66	Tmem258	ENSMUST00000040372.13:c.196T>G	ENSMUSP00000044751.7:p.Phe66Val	H-2-Kb	8	4	8	VASLFMGV	VASLFMGF	NetMHC	37.83	202.78	5.36	212	0.024	128.266	476.977	3.719	202.78	37.83	174.7	78.4	810.4757034	178.1312026	751.173053	216.6406749	M6	1.9	1.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.031	212	363	10	0.027548209	19qA	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.166307601	sgMsh2	cell line
chr19	44153684	44153684	A	G	ENSMUST00000042026.4	1	ENSMUSG00000037578	missense	V/A	545	Pkd2l1	ENSMUST00000042026.4:c.1634T>C	ENSMUSP00000045675.4:p.Val545Ala	H-2-Kb	8	11	1	AFFVFFVL	VFFVFFVL	SMM	12.964	3.441	0.265	204	0.118	32.287	10.863	0.336	17.71	50.81	79.7	179.2	3.441438398	12.96402918	4.015503419	13.76385219	M6	3.342857143	3.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.127	204	0	0	NA	19qC3	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.681324688	sgMsh2	cell line
chr19	44973627	44973627	T	C	ENSMUST00000096053.4	1	ENSMUSG00000036097	missense	I/T	1081	Slf2	ENSMUST00000096053.4:c.3242T>C	ENSMUSP00000093758.3:p.Ile1081Thr	H-2-Kb	8	5	7	AYYLTYTL	AYYLTYIL	NetMHC	157.88	325.67	2.063	471	0.025	364.856	839.945	2.302	325.67	157.88	374.5	180.5	1305.389154	569.823033	1434.630303	549.2119775	M6	0.328571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.026	471	107	5	0.046728972	19qC3	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.139483794	sgMsh2	cell line
chr19	44973627	44973627	T	C	ENSMUST00000096053.4	1	ENSMUSG00000036097	missense	I/T	1081	Slf2	ENSMUST00000096053.4:c.3242T>C	ENSMUSP00000093758.3:p.Ile1081Thr	H-2-Kb	8	6	6	YYLTYTLL	YYLTYILL	NetMHCpan	165.3	361.7	2.188	471	0.025	245.167	350.171	1.428	417.91	195.39	361.7	165.3	333.2268594	301.8144301	338.6413603	294.9442949	M6	1.057142857	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.026	471	107	5	0.046728972	19qC3	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.139483794	sgMsh2	cell line
chr19	34039172	34039172	A	G	ENSMUST00000054260.7	1	ENSMUSG00000024771	missense	S/G	267	Lipk	ENSMUST00000054260.7:c.799A>G	ENSMUSP00000053913.6:p.Ser267Gly	H-2-Kb	8	4	8	SNFLFSLG	SNFLFSLS	SMM	51.492	48.949	0.951	116	0.138	115.861	82.255	0.71	98.25	207.49	82.9	150.3	48.94856902	51.49202839	81.60936526	81.42166892	M6	1.214285714	1.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.148	116	0	0	NA	19qC1	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.793984676	sgMsh2	cell line
chr19	25158466	25158466	A	G	ENSMUST00000025831.7	1	ENSMUSG00000052085	missense	Y/C	1216	Dock8	ENSMUST00000025831.7:c.3647A>G	ENSMUSP00000025831.6:p.Tyr1216Cys	H-2-Kb	8	7	5	IAALCLPL	IAALYLPL	NetMHCpan	307.8	11.6	0.038	163	0.153	324.653	23.093	0.071	18.02	559.33	11.6	307.8	28.16696149	315.3116375	34.17747702	333.9950266	M6	2.271428571	2.371428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.157	163	2	0	0	19qB	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.842267528	sgMsh2	cell line
chr19	16383254	16383254	G	A	ENSMUST00000025541.5	1	ENSMUSG00000024639	missense	V/M	314	Gnaq	ENSMUST00000025541.5:c.940G>A	ENSMUSP00000025541.5:p.Val314Met	H-2-Kb	8	6	6	ILKMFMDL	ILKMFVDL	NetMHCpan	249.7	319.7	1.28	199	0.141	388.374	474.546	1.222	1460.9	633.96	319.7	249.7	595.3056439	459.9811133	353.7854762	316.7670499	M6	0.971428571	1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.149	199	529	87	0.164461248	19qA	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.799349437	sgMsh2	cell line
chr19	41256264	41256264	T	C	ENSMUST00000237871.1	NA	ENSMUSG00000025016	missense	Y/C	58	Tm9sf3	ENSMUST00000237871.1:c.173A>G	ENSMUSP00000158318.1:p.Tyr58Cys	H-2-Kb	8	7	5	ETYKCFSL	ETYKYFSL	SMMPMBEC	339.422	34.733	0.102	257	0.128	423.919	29.141	0.069	23.55	728.5	20.1	383.6	41.47056956	464.2372661	34.73281635	339.4220093	M6	0.342857143	0.342857143	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.141	257	1387	205	0.147801009	19qC3	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.756431347	sgMsh2	cell line
chr19	38795525	38795525	A	G	ENSMUST00000025963.7	1	ENSMUSG00000024999	missense	Y/H	580	Noc3l	ENSMUST00000025963.7:c.1738T>C	ENSMUSP00000025963.7:p.Tyr580His	H-2-Kb	8	11	1	HTHLYKTL	YTHLYKTL	SMMPMBEC	323.4	167.009	0.516	505	0.158	480.348	160.895	0.335	154.78	777.63	65.4	490	200.7890385	470.6954498	167.0090478	323.3999884	M6	-0.314285714	-0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.152	505	127	11	0.086614173	19qC3	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.815443721	sgMsh2	cell line
chr19	5751857	5751857	AG	A	ENSMUST00000081496.5	5	ENSMUSG00000024940	FS	Q/X	734	Ltbp3	ENSMUST00000081496.5:c.2207del	ENSMUSP00000080214.5:p.Gly736AlafsTer46	H-2-Kb	8	34	0	RTFRVLTV	NA	NetMHCpan	354.1	NA	NA	58	0.121	465.42	NA	NA	NA	1425.62	NA	354.1	NA	432.2549746	NA	498.5859086	M6	1.3	1.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.132	58	296	6	0.02027027	19qA	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr19	44153684	44153684	A	G	ENSMUST00000042026.4	1	ENSMUSG00000037578	missense	V/A	545	Pkd2l1	ENSMUST00000042026.4:c.1634T>C	ENSMUSP00000045675.4:p.Val545Ala	H-2-Kb	9	8	4	VTYAFFVFF	VTYVFFVFF	NetMHC	18.25	16.24	0.89	204	0.118	21.619	16.215	0.75	16.24	18.25	64.3	35.8	13.30791444	21.04311361	16.19011748	22.19473684	M6	2.271428571	2.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.127	204	0	0	NA	19qC3	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.681324688	sgMsh2	cell line
chr19	44973627	44973627	T	C	ENSMUST00000096053.4	1	ENSMUSG00000036097	missense	I/T	1081	Slf2	ENSMUST00000096053.4:c.3242T>C	ENSMUSP00000093758.3:p.Ile1081Thr	H-2-Kb	9	5	7	AYYLTYTLL	AYYLTYILL	NetMHC	38.65	71.83	1.858	471	0.025	52.197	70.367	1.348	71.83	38.65	163.4	63.7	44.06664633	41.69749833	68.90488306	62.69746764	M6	1.057142857	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.026	471	107	5	0.046728972	19qC3	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.139483794	sgMsh2	cell line
chr19	44153684	44153684	A	G	ENSMUST00000042026.4	1	ENSMUSG00000037578	missense	V/A	545	Pkd2l1	ENSMUST00000042026.4:c.1634T>C	ENSMUSP00000045675.4:p.Val545Ala	H-2-Kb	9	11	1	AFFVFFVLL	VFFVFFVLL	SMM	22.757	7.658	0.337	204	0.118	34.218	15.048	0.44	19.57	39.38	85	173.7	7.657905451	22.7567375	10.52567606	29.05694826	M6	3.485714286	3.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.127	204	0	0	NA	19qC3	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.681324688	sgMsh2	cell line
chr19	44153684	44153684	A	G	ENSMUST00000042026.4	1	ENSMUSG00000037578	missense	V/A	545	Pkd2l1	ENSMUST00000042026.4:c.1634T>C	ENSMUSP00000045675.4:p.Val545Ala	H-2-Kb	9	5	7	VYFVTYAFF	VYFVTYVFF	SMM	53.347	76.933	1.442	204	0.118	78.174	169.486	2.168	233.23	78.32	694.7	138.5	76.93252737	53.3469998	105.7426037	78.02791461	M6	1.771428571	1.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.127	204	0	0	NA	19qC3	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.681324688	sgMsh2	cell line
chr19	13445599	13445599	A	G	ENSMUST00000217249.1	5	ENSMUSG00000096320	missense	T/A	196	Olfr1471	ENSMUST00000217249.1:c.586A>G	ENSMUSP00000150749.1:p.Thr196Ala	H-2-Kb	9	10	2	IALLVLATL	ITLLVLATL	NetMHC	124.05	139.69	1.126	761	0.125	228.715	283.656	1.24	139.69	124.05	144.4	129.9	462.4981501	335.8226621	422.9119919	327.5291816	M6	2.928571429	3.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.128	761	0	0	NA	19qA	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.68668945	sgMsh2	cell line
chr19	44973627	44973627	T	C	ENSMUST00000096053.4	1	ENSMUSG00000036097	missense	I/T	1081	Slf2	ENSMUST00000096053.4:c.3242T>C	ENSMUSP00000093758.3:p.Ile1081Thr	H-2-Kb	9	4	8	QAYYLTYTL	QAYYLTYIL	NetMHCpan	118.9	287.1	2.415	471	0.025	148.952	306.938	2.061	357.17	145.46	287.1	118.9	170.2589693	152.4438821	326.7758854	276.8534884	M6	0.328571429	0.328571429	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.026	471	107	5	0.046728972	19qC3	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.139483794	sgMsh2	cell line
chr19	41232352	41232352	CA	C	ENSMUST00000237871.1	NA	ENSMUSG00000025016	FS	F/X	390	Tm9sf3	ENSMUST00000237871.1:c.1170del	ENSMUSP00000158318.1:p.Phe390LeufsTer18	H-2-Kb	9	13	0	QWWPFVASV	NA	NetMHC	158.39	NA	NA	207	0.179	351.035	NA	NA	NA	158.39	NA	422.1	NA	279.9690348	NA	484.4511598	M6	1.385714286	1.385714286	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.175	207	1158	1	0.000863558	19qC3	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.938833232	sgMsh2	cell line
chr19	13453837	13453837	G	A	ENSMUST00000096201.3	5	ENSMUSG00000095189	missense	R/C	227	Olfr1472	ENSMUST00000096201.3:c.679C>T	ENSMUSP00000093915.3:p.Arg227Cys	H-2-Kb	9	5	7	IAILRMCSV	IAILRMRSV	NetMHCpan	154	207.9	1.35	474	0.12	210.333	264.356	1.257	135.27	172.21	207.9	154	370.7746213	299.3022626	320.8115533	248.4562923	M6	1.657142857	2.071428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.122	474	0	0	NA	19qA	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.654500882	sgMsh2	cell line
chr19	20804657	20804657	T	C	ENSMUST00000039500.3	1	ENSMUSG00000024749	missense	T/A	566	Tmc1	ENSMUST00000039500.3:c.1696A>G	ENSMUSP00000040859.3:p.Thr566Ala	H-2-Kb	9	5	7	YGYPSYAEF	YGYPSYTEF	NetMHCpan	53	104.8	1.977	372	0.145	218.192	346.66	1.589	479.59	191.98	104.8	53	326.6705622	244.4049514	366.6485738	269.3084622	M6	-0.557142857	-0.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.125	372	0	0	NA	19qB	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.670595166	sgMsh2	cell line
chr19	13705333	13705333	A	G	ENSMUST00000216366.1	5	ENSMUSG00000051156	missense	T/A	169	Olfr1491	ENSMUST00000216366.1:c.505A>G	ENSMUSP00000149071.1:p.Thr169Ala	H-2-Kb	9	6	6	TALIFALPF	TALIFTLPF	NetMHC	239.87	221.04	0.921	415	0.024	260.671	213.815	0.82	221.04	239.87	225.8	251.5	206.5903351	269.8422814	205.7074402	286.5827198	M6	2.557142857	2.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.028	415	0	0	NA	19qA	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.150213317	sgMsh2	cell line
chr19	7025374	7025374	AG	A	ENSMUST00000025918.8	1	ENSMUSG00000024966	FS	L/X	396	Stip1	ENSMUST00000025918.8:c.1186del	ENSMUSP00000025918.7:p.Leu396CysfsTer28	H-2-Kb	9	23	0	WSFSWHSRT	NA	NetMHC	256.34	NA	NA	207	0.135	302.987	NA	NA	NA	256.34	NA	591.5	NA	320.7081525	NA	285.2659918	M6	-1.157142857	-0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.136	207	482	1	0.002074689	19qA	chr19-6054831-7683235	8	6	2	0.93	4.989228032	RARE KARYOTYPE	1	0.72960754	sgMsh2	cell line
chr19	16383254	16383254	G	A	ENSMUST00000025541.5	1	ENSMUSG00000024639	missense	V/M	314	Gnaq	ENSMUST00000025541.5:c.940G>A	ENSMUSP00000025541.5:p.Val314Met	H-2-Kb	9	5	7	FILKMFMDL	FILKMFVDL	NetMHC	268.8	623.27	2.319	199	0.141	358.268	502.216	1.402	623.27	268.8	645.4	411.6	381.1623536	362.3347605	317.8703353	354.201177	M6	0.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.149	199	529	87	0.164461248	19qA	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.799349437	sgMsh2	cell line
chr19	46585712	46585712	C	T	ENSMUST00000026011.7	1	ENSMUSG00000025036	missense	P/S	114	Sfxn2	ENSMUST00000026011.7:c.340C>T	ENSMUSP00000026011.6:p.Pro114Ser	H-2-Kb	9	11	1	SAVIFWQWV	PAVIFWQWV	SMM	269.842	653.296	2.421	185	0.059	287.27	3278	11.411	5802.21	279.25	9993.3	454.7	653.2960014	269.8422814	753.7893549	295.2908568	M6	1.485714286	1.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.064	185	12	0	0	19qC3	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.343344725	sgMsh2	cell line
chr19	41232352	41232352	CA	C	ENSMUST00000237871.1	NA	ENSMUSG00000025016	FS	F/X	390	Tm9sf3	ENSMUST00000237871.1:c.1170del	ENSMUSP00000158318.1:p.Phe390LeufsTer18	H-2-Kb	9	19	0	ASVSLLSFL	NA	NetMHC	310.28	NA	NA	207	0.179	433.65	NA	NA	NA	310.28	NA	332.6	NA	534.6997733	NA	671.8154697	M6	2.4	2.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.175	207	1158	1	0.000863558	19qC3	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.938833232	sgMsh2	cell line
chr19	23350619	23350619	T	C	ENSMUST00000036069.7	1	ENSMUSG00000033207	missense	K/E	462	Mamdc2	ENSMUST00000036069.7:c.1384A>G	ENSMUSP00000045432.6:p.Lys462Glu	H-2-Kb	9	8	4	ISFEKPMPT	ISFKKPMPT	SMMPMBEC	350.954	347.736	0.991	247	0.134	411.952	407.077	0.988	422.41	431.16	402.9	464.7	411.2538721	392.7443988	347.7362769	350.9538411	M6	-0.942857143	-0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.131	247	1	0	0	19qB	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.702783733	sgMsh2	cell line
chr19	6077057	6077057	T	C	ENSMUST00000025711.12	1	ENSMUSG00000024797	missense	Y/C	41	Vps51	ENSMUST00000025711.12:c.122A>G	ENSMUSP00000025711.5:p.Tyr41Cys	H-2-Kb	9	5	7	GMLKLYCGL	GMLKLYYGL	SMM	190.156	167.537	0.881	36	0.139	328.753	280.804	0.854	348.18	438.1	500	444.3	167.5367167	190.1559854	213.4273146	219.4067579	M6	1.185714286	1.185714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.158	36	40	4	0.1	19qA	chr19-6054831-7683235	8	6	2	0.93	4.989228032	RARE KARYOTYPE	1	0.847632289	sgMsh2	cell line
chr19	44973627	44973627	T	C	ENSMUST00000096053.4	1	ENSMUSG00000036097	missense	I/T	1081	Slf2	ENSMUST00000096053.4:c.3242T>C	ENSMUSP00000093758.3:p.Ile1081Thr	H-2-Kb	9	8	4	LTYTLLHLV	LTYILLHLV	NetMHCpan	420.8	764.9	1.818	471	0.025	426.798	410.951	0.963	451.86	440.77	764.9	420.8	360.6699835	420.8332054	370.0411313	432.7628777	M6	1.485714286	1.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.026	471	107	5	0.046728972	19qC3	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.139483794	sgMsh2	cell line
chr19	34039172	34039172	A	G	ENSMUST00000054260.7	1	ENSMUSG00000024771	missense	S/G	267	Lipk	ENSMUST00000054260.7:c.799A>G	ENSMUSP00000053913.6:p.Ser267Gly	H-2-Kb	9	4	8	SNFLFSLGG	SNFLFSLSG	SMM	263.7	295.876	1.122	116	0.138	383.954	383.395	0.999	645.93	475	380.2	387.5	295.876178	263.6999212	386.5894518	380.4083139	M6	1.657142857	1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.148	116	0	0	NA	19qC1	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.793984676	sgMsh2	cell line
chr19	44153684	44153684	A	G	ENSMUST00000042026.4	1	ENSMUSG00000037578	missense	V/A	545	Pkd2l1	ENSMUST00000042026.4:c.1634T>C	ENSMUSP00000045675.4:p.Val545Ala	H-2-Kb	9	10	2	YAFFVFFVL	YVFFVFFVL	SMMPMBEC	210.984	243.921	1.156	204	0.118	312.217	409.242	1.311	559	489.13	827.6	393.7	259.483651	230.7331526	243.9214539	210.9842323	M6	3.342857143	3.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.127	204	0	0	NA	19qC3	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.681324688	sgMsh2	cell line
chr19	23708921	23708921	C	T	ENSMUST00000237333.1	NA	ENSMUSG00000074925	missense	S/F	199	Ptar1	ENSMUST00000237333.1:c.596C>T	ENSMUSP00000157782.1:p.Ser199Phe	H-2-Kb	9	9	3	AWFHRIWVL	AWSHRIWVL	SMMPMBEC	169.141	1466.392	8.67	86	0.128	268.674	2576.438	9.589	6934.24	803.61	3426.6	352.8	1726.275075	184.5482792	1466.391721	169.1414308	M6	0.957142857	0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.118	86	38	11	0.289473684	19qB	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.633041836	sgMsh2	cell line
chr19	6171394	6171394	T	C	ENSMUST00000045042.7	1	ENSMUSG00000039699	missense	L/P	78	Batf2	ENSMUST00000045042.7:c.233T>C	ENSMUSP00000045744.7:p.Leu78Pro	H-2-Kb	9	5	7	AGWGRTPHL	AGWGRTLHL	NetMHCpan	309.4	307.7	0.995	113	0.027	429.93	509.685	1.186	870.88	1085.26	307.7	309.4	579.5754752	482.0698829	439.7947088	377.7896015	M6	-1.071428571	-0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.037	113	0	0	NA	19qA	chr19-6054831-7683235	8	6	2	0.93	4.989228032	RARE KARYOTYPE	1	0.198496169	sgMsh2	cell line
chr19	44153684	44153684	A	G	ENSMUST00000042026.4	1	ENSMUSG00000037578	missense	V/A	545	Pkd2l1	ENSMUST00000042026.4:c.1634T>C	ENSMUSP00000045675.4:p.Val545Ala	H-2-Kb	10	8	4	VTYAFFVFFV	VTYVFFVFFV	NetMHC	55.76	45.18	0.81	204	0.118	458.736	672.477	1.466	45.18	55.76	412	191.6	1433.276565	902.2564596	932.9535036	725.8719263	M6	3.057142857	3.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.127	204	0	0	NA	19qC3	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.681324688	sgMsh2	cell line
chr19	44153684	44153684	A	G	ENSMUST00000042026.4	1	ENSMUSG00000037578	missense	V/A	545	Pkd2l1	ENSMUST00000042026.4:c.1634T>C	ENSMUSP00000045675.4:p.Val545Ala	H-2-Kb	11	8	4	VTYAFFVFFVL	VTYVFFVFFVL	NetMHC	35.43	29.25	0.826	204	0.118	424.25	451.635	1.065	29.25	35.43	165.4	84.7	1782.871325	1782.871325	737.8702492	763.8006085	M6	3.342857143	3.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.127	204	0	0	NA	19qC3	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.681324688	sgMsh2	cell line
chr2	10126177	10126177	T	G	ENSMUST00000042290.13	1	ENSMUSG00000037254	missense	K/N	116	Itih2	ENSMUST00000042290.13:c.348A>C	ENSMUSP00000046530.7:p.Lys116Asn	H-2-Db	9	7	5	VQIPNGAFI	VQIPKGAFI	NetMHC	15.68	3324.83	212.043	205	0.22	65.122	3234.913	49.675	3324.83	15.68	2541.1	33.5	3144.995295	96.74310008	3833.275205	114.1747318	M6	1.157142857	1.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.224	205	121	30	0.247933884	2qA1	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr2	37790466	37790466	T	C	ENSMUST00000050372.9	5	ENSMUSG00000035403	missense	F/L	469	Crb2	ENSMUST00000050372.9:c.1405T>C	ENSMUSP00000058007.7:p.Phe469Leu	H-2-Db	9	7	5	LALRLRTTL	LALRFRTTL	SMM	127.826	330.081	2.582	112	0.304	152.598	365.275	2.394	278.88	139.02	657.5	644.7	330.0806	127.8262358	400.4700113	166.1766501	M6	0.142857143	0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.297	112	0	0	NA	2qB	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr19	47129189	47129189	GA	G	ENSMUST00000072141.3	1	ENSMUSG00000025047	FS	E/X	1659	Pdcd11	ENSMUST00000072141.3:c.4979del	ENSMUSP00000072008.2:p.Asn1660ThrfsTer9	H-2-Db	9	5	8	VALLNLETC	VALLNLENM	SMMPMBEC	54.647	20.633	0.378	172	0.14	159.116	15.88	0.1	10.3	226.9	11.5	489.4	20.25909309	91.33137583	20.63336211	54.64746241	M6	0.885714286	1.485714286	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.146	172	87	1	0.011494253	19qC3	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.783255153	sgMsh2	cell line
chr2	22577871	22577871	T	C	ENSMUST00000044749.13	5	ENSMUSG00000025716	missense	V/A	1317	Myo3a	ENSMUST00000044749.13:c.3950T>C	ENSMUSP00000046329.7:p.Val1317Ala	H-2-Db	9	10	2	SAVTQNAPL	SVVTQNAPL	SMMPMBEC	357.742	2283.337	6.383	151	0.06	496.921	3714.743	7.476	9108.98	745.43	4105.8	474.3	3323.686094	519.5412082	2283.336925	357.7420571	M6	0.071428571	0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.066	151	0	0	NA	2qA3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.354074247	sgMsh2	cell line
chr19	47733582	47733582	A	G	ENSMUST00000099353.5	1	ENSMUSG00000025066	missense	S/G	146	Sfr1	ENSMUST00000099353.5:c.436A>G	ENSMUSP00000096954.4:p.Ser146Gly	H-2-Kb	8	5	7	SSHSFCGV	SSHSFCSV	NetMHC	18.13	24.06	1.327	271	0.144	65.319	62.76	0.961	24.06	18.13	46.5	54.3	79.02054124	76.33786332	79.75170931	76.69022289	M6	0.614285714	0.614285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.154	271	980	136	0.13877551	19qD1	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.826173244	sgMsh2	cell line
chr2	36422162	36422162	A	T	ENSMUST00000216645.1	3	ENSMUSG00000094464	missense	I/F	255	Olfr339	ENSMUST00000216645.1:c.763A>T	ENSMUSP00000149068.1:p.Ile255Phe	H-2-Kb	8	4	8	VSLYYGAF	VSLYYGAI	NetMHC	20.3	8.51	0.419	417	0.189	56.21	23.161	0.412	8.51	20.3	9.7	32.3	37.73462166	94.56708451	36.62182643	80.11982647	M6	0.657142857	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.193	417	0	0	NA	2qB	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr2	36422142	36422142	T	C	ENSMUST00000216645.1	3	ENSMUSG00000094464	missense	V/A	248	Olfr339	ENSMUST00000216645.1:c.743T>C	ENSMUSP00000149068.1:p.Val248Ala	H-2-Kb	8	11	1	ASLYYGAI	VSLYYGAI	NetMHCpan	32.7	9.7	0.297	447	0.186	79.694	23.161	0.291	8.51	33.86	9.7	32.7	37.73462166	142.1477533	36.62182643	125.5278239	M6	0.9	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.191	447	0	0	NA	2qB	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr2	32673367	32673367	A	G	ENSMUST00000009705.13	1	ENSMUSG00000026814	missense	T/A	312	Eng	ENSMUST00000009705.13:c.934A>G	ENSMUSP00000009705.7:p.Thr312Ala	H-2-Kb	8	9	3	IVASFVEL	IVTSFVEL	NetMHCpan	22.7	36.5	1.608	107	0.159	84.25	86.074	1.022	64.07	68.33	36.5	22.7	111.8767908	100.1705365	108.0786721	107.0878008	M6	1.785714286	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.168	107	0	0	NA	2qB	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.901279903	sgMsh2	cell line
chr2	32673367	32673367	A	G	ENSMUST00000009705.13	1	ENSMUSG00000026814	missense	T/A	312	Eng	ENSMUST00000009705.13:c.934A>G	ENSMUSP00000009705.7:p.Thr312Ala	H-2-Kb	8	11	1	ASFVELPL	TSFVELPL	SMMPMBEC	56.72	44.539	0.785	107	0.159	72.04	60.417	0.839	73.04	82.88	54.5	61.2	66.33458249	83.70280268	44.53895263	56.7204934	M6	1.242857143	1.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.168	107	0	0	NA	2qB	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.901279903	sgMsh2	cell line
chr2	27018384	27018384	T	C	ENSMUST00000114007.7	1	ENSMUSG00000015488	missense	V/A	110	Cacfd1	ENSMUST00000114007.7:c.329T>C	ENSMUSP00000109640.1:p.Val110Ala	H-2-Kb	8	10	2	IAPIVMSL	IVPIVMSL	NetMHC	149.05	202.13	1.356	111	0.216	267.587	302.714	1.131	202.13	149.05	258.1	193.4	347.3281635	341.7747702	438.2682402	473.9581548	M6	1.971428571	2.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.242	111	53	8	0.150943396	2qA3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr2	16357184	16357184	T	C	ENSMUST00000028081.12	1	ENSMUSG00000026748	missense	F/S	20	Plxdc2	ENSMUST00000028081.12:c.59T>C	ENSMUSP00000028081.6:p.Phe20Ser	H-2-Kb	8	5	7	VMLLCHSL	VMLLCHFL	NetMHCpan	111.4	240.8	2.162	109	0.294	167.948	200.33	1.193	262.88	161.82	240.8	111.4	154.0777756	181.0256018	159.8600704	174.0764414	M6	1.685714286	1.742857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.298	109	0	0	NA	2qA2	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr2	20859758	20859758	T	G	ENSMUST00000154230.8	1	ENSMUSG00000036591	missense	K/N	1228	Arhgap21	ENSMUST00000154230.8:c.3684A>C	ENSMUSP00000122497.2:p.Lys1228Asn	H-2-Kb	8	10	2	LNSFFRKL	LKSFFRKL	NetMHCpan	63	1547.8	24.568	195	0.185	325.727	2018.704	6.198	4540.17	230.01	1547.8	63	2097.683683	426.324214	1939.724271	421.444121	M6	-0.471428571	-0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.189	195	86	16	0.186046512	2qA3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr2	37405335	37405335	A	C	ENSMUST00000100143.9	5	ENSMUSG00000075376	missense	V/G	223	Rc3h2	ENSMUST00000100143.9:c.668T>G	ENSMUSP00000097721.3:p.Val223Gly	H-2-Kb	8	8	4	VLFGVQRL	VLFVVQRL	NetMHCpan	165.8	52.4	0.316	155	0.065	207.26	71.12	0.343	63.22	364.58	52.4	165.8	79.02054124	199.8664966	79.93555598	214.6545013	M6	0.885714286	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.066	155	62	2	0.032258065	2qB	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.354074247	sgMsh2	cell line
chr2	36422162	36422162	A	T	ENSMUST00000216645.1	3	ENSMUSG00000094464	missense	I/F	255	Olfr339	ENSMUST00000216645.1:c.763A>T	ENSMUSP00000149068.1:p.Ile255Phe	H-2-Kb	9	4	8	VSLYYGAFI	VSLYYGAII	NetMHCpan	33.9	59	1.74	417	0.189	143.531	163.782	1.141	101.49	43.14	59	33.9	247.8049629	289.8077532	226.073678	243.9214539	M6	1.414285714	1.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.193	417	0	0	NA	2qB	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr2	35422190	35422190	A	G	ENSMUST00000102794.7	1	ENSMUSG00000035778	missense	Y/H	59	Ggta1	ENSMUST00000102794.7:c.175T>C	ENSMUSP00000099858.1:p.Tyr59His	H-2-Kb	9	4	8	VVVVFWEHV	VVVVFWEYV	NetMHC	48.89	78.19	1.599	157	0.242	111.82	155.423	1.39	78.19	48.89	170.7	86.2	143.2550696	137.4390042	167.5907328	153.196908	M6	1.114285714	2.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.234	157	124	21	0.169354839	2qB	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr2	36422142	36422142	T	C	ENSMUST00000216645.1	3	ENSMUSG00000094464	missense	V/A	248	Olfr339	ENSMUST00000216645.1:c.743T>C	ENSMUSP00000149068.1:p.Val248Ala	H-2-Kb	9	10	2	VASLYYGAI	VVSLYYGAI	NetMHCpan	41.6	59.5	1.43	447	0.186	87.035	105.607	1.213	66.92	49.26	59.5	41.6	164.1005362	145.9183802	144.2945739	124.8101773	M6	0.9	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.191	447	0	0	NA	2qB	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr2	36422162	36422162	A	T	ENSMUST00000216645.1	3	ENSMUSG00000094464	missense	I/F	255	Olfr339	ENSMUST00000216645.1:c.763A>T	ENSMUSP00000149068.1:p.Ile255Phe	H-2-Kb	9	3	9	VVSLYYGAF	VVSLYYGAI	NetMHC	95.95	66.92	0.697	417	0.189	109.707	105.607	0.963	66.92	95.95	59.5	150.8	164.1005362	111.4576803	144.2945739	107.9567993	M6	0.657142857	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.193	417	0	0	NA	2qB	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr19	47733582	47733582	A	G	ENSMUST00000099353.5	1	ENSMUSG00000025066	missense	S/G	146	Sfr1	ENSMUST00000099353.5:c.436A>G	ENSMUSP00000096954.4:p.Ser146Gly	H-2-Kb	9	5	7	SSHSFCGVV	SSHSFCSVV	NetMHC	126.54	73.19	0.578	271	0.144	302.608	204.113	0.675	73.19	126.54	128.9	189.2	279.3251239	416.0159675	366.6485738	466.9280884	M6	1.328571429	1.328571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.154	271	980	136	0.13877551	19qD1	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.826173244	sgMsh2	cell line
chr2	23110710	23110710	A	G	ENSMUST00000114529.9	1	ENSMUSG00000026781	missense	I/M	488	Acbd5	ENSMUST00000114529.9:c.1464A>G	ENSMUSP00000110175.2:p.Ile488Met	H-2-Kb	9	10	2	IMWPFIAQW	IIWPFIAQW	NetMHC	145.25	189.33	1.303	196	0.189	256.387	559.523	2.182	189.33	145.25	850.1	568	764.0292757	341.2793414	355.017695	171.4944225	M6	0.314285714	1.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.182	196	171	36	0.210526316	2qA3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.976386561	sgMsh2	cell line
chr2	36890485	36890485	T	C	ENSMUST00000217215.2	5	ENSMUSG00000075382	missense	Y/C	121	Olfr353	ENSMUST00000217215.2:c.362A>G	ENSMUSP00000149378.1:p.Tyr121Cys	H-2-Kb	9	6	6	MAYDRCVAI	MAYDRYVAI	NetMHCpan	132.7	14.4	0.109	369	0.192	145.305	30.259	0.208	27.08	145.65	14.4	132.7	39.27443988	184.1238299	33.43874735	144.9606074	M6	0.528571429	0.528571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.191	369	0	0	NA	2qB	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr2	36422162	36422162	A	T	ENSMUST00000216645.1	3	ENSMUSG00000094464	missense	I/F	255	Olfr339	ENSMUST00000216645.1:c.763A>T	ENSMUSP00000149068.1:p.Ile255Phe	H-2-Kb	9	6	6	LYYGAFIGL	LYYGAIIGL	SMM	119.154	421.803	3.54	417	0.189	154.202	569.436	3.693	766.3	168.39	604	152	421.8033261	119.1543769	534.872168	156.4047722	M6	1.542857143	1.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.193	417	0	0	NA	2qB	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr2	52105483	52105483	C	T	ENSMUST00000112693.9	5	ENSMUSG00000036202	missense	L/F	905	Rif1	ENSMUST00000112693.9:c.2713C>T	ENSMUSP00000108313.2:p.Leu905Phe	H-2-Kb	9	3	9	VACLQFSYF	VACLQFSYL	NetMHC	191.1	33.73	0.177	158	0.19	209.082	96.414	0.461	33.73	191.1	75	428	127.0895963	214.3433431	117.8284053	203.8215031	M6	0.9	1.542857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.199	158	79	2	0.025316456	2qC1.1	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr2	13444324	13444324	T	C	ENSMUST00000091436.6	5	ENSMUSG00000026726	missense	E/G	980	Cubn	ENSMUST00000091436.6:c.2939A>G	ENSMUSP00000089009.5:p.Glu980Gly	H-2-Kb	9	4	8	VFSSFYLGF	VFSSFYLEF	SMM	101.651	116.711	1.148	134	0.216	184.67	276.944	1.5	372.65	205.94	425.2	408.8	116.7105189	101.6506125	181.2383084	163.3992279	M6	0.871428571	1.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.219	134	31	7	0.225806452	2qA1	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr2	32673367	32673367	A	G	ENSMUST00000009705.13	1	ENSMUSG00000026814	missense	T/A	312	Eng	ENSMUST00000009705.13:c.934A>G	ENSMUSP00000009705.7:p.Thr312Ala	H-2-Kb	9	8	4	SIVASFVEL	SIVTSFVEL	NetMHCpan	172	152.9	0.889	107	0.159	379.729	326.134	0.859	207.38	242.91	152.9	172	461.4344339	516.547186	444.8872915	529.9684305	M6	1.785714286	2.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.168	107	0	0	NA	2qB	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.901279903	sgMsh2	cell line
chr2	32673367	32673367	A	G	ENSMUST00000009705.13	1	ENSMUSG00000026814	missense	T/A	312	Eng	ENSMUST00000009705.13:c.934A>G	ENSMUSP00000009705.7:p.Thr312Ala	H-2-Kb	9	11	1	ASFVELPLV	TSFVELPLV	SMM	299.992	254.748	0.849	107	0.159	371.47	300.368	0.809	268.65	327.64	378.9	415.3	254.7475407	299.9922256	332.0855664	418.0709584	M6	1.957142857	1.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.168	107	0	0	NA	2qB	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.901279903	sgMsh2	cell line
chr19	50333459	50333459	C	A	ENSMUST00000209413.1	1	ENSMUSG00000043531	missense	K/N	295	Sorcs1	ENSMUST00000209413.1:c.885G>T	ENSMUSP00000147463.1:p.Lys295Asn	H-2-Kb	9	4	8	LAYSQDQNL	LAYSQDQKL	SMM	213.359	322.931	1.514	179	0.117	330.13	670.548	2.031	984.44	359.48	1692.8	600	322.9311952	213.3585248	356.6563823	300.7807237	M6	-1.757142857	-1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.119	179	0	0	NA	19qD1	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.638406598	sgMsh2	cell line
chr2	65763849	65763849	T	C	ENSMUST00000028377.13	5	ENSMUSG00000075318	missense	S/P	1681	Scn2a	ENSMUST00000028377.13:c.5041T>C	ENSMUSP00000028377.7:p.Ser1681Pro	H-2-Db	9	8	4	FGMPNFAYV	FGMSNFAYV	NetMHCpan	10.7	5.9	0.551	364	0.192	61.961	27.758	0.448	4.26	11.3	5.9	10.7	49.6158002	112.621161	50.5324087	118.732606	M6	0.614285714	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.195	364	0	0	NA	2qC1.3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr2	86170923	86170923	T	G	ENSMUST00000215171.1	5	ENSMUSG00000075200	missense	K/T	298	Olfr1044	ENSMUST00000215171.1:c.893A>C	ENSMUSP00000150199.1:p.Lys298Thr	H-2-Db	9	3	9	YSLRNKEVT	YSLRNKEVK	NetMHC	87.92	1335.88	15.194	241	0.108	176.299	819.153	4.646	1335.88	87.92	5047.6	192.8	302.4266091	282.2409336	223.1361832	159.7975071	M6	-1.157142857	-1.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.111	241	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.595488507	sgMsh2	cell line
chr2	87418564	87418564	CA	C	ENSMUST00000054974.1	NA	ENSMUSG00000043274	FS	Q/X	172	Olfr1123	ENSMUST00000054974.1:c.517del	ENSMUSP00000058786.1:p.Thr173HisfsTer35	H-2-Db	9	34	0	HQYSNLLVV	NA	NetMHC	103.9	NA	NA	369	0.119	214.459	NA	NA	NA	103.9	NA	140.8	NA	292.8329887	NA	288.1177403	M6	1.485714286	1.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.127	369	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.681324688	sgMsh2	cell line
chr2	87418564	87418564	CA	C	ENSMUST00000054974.1	NA	ENSMUSG00000043274	FS	Q/X	172	Olfr1123	ENSMUST00000054974.1:c.517del	ENSMUSP00000058786.1:p.Thr173HisfsTer35	H-2-Db	9	15	0	FSLCLFVAL	NA	NetMHC	117.88	NA	NA	369	0.119	212.776	NA	NA	NA	117.88	NA	482.2	NA	196.1643123	NA	229.387633	M6	3.242857143	3.242857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.127	369	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.681324688	sgMsh2	cell line
chr2	85753673	85753673	A	AC	ENSMUST00000216831.2	3	ENSMUSG00000110879	FS	Y/YX	104	Olfr1010	ENSMUST00000216831.2:c.319dup	ENSMUSP00000151209.1:p.Leu107ProfsTer209	H-2-Db	9	61	0	GGFANSTII	NA	NetMHCpan	146.1	NA	NA	357	0.151	280.895	NA	NA	NA	182.85	NA	146.1	NA	552.8661494	NA	378.9396067	M6	1.228571429	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1513	357	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.811688388	sgMsh2	cell line
chr2	85753673	85753673	A	AC	ENSMUST00000216831.2	3	ENSMUSG00000110879	FS	Y/YX	104	Olfr1010	ENSMUST00000216831.2:c.319dup	ENSMUSP00000151209.1:p.Leu107ProfsTer209	H-2-Db	9	52	0	ASLVAASYL	NA	SMM	294.863	NA	NA	357	0.151	321.475	NA	NA	NA	345.25	NA	297.7	NA	294.86281	NA	442.1503774	M6	1.9	1.9	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1513	357	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.811688388	sgMsh2	cell line
chr2	85753673	85753673	A	AC	ENSMUST00000216831.2	3	ENSMUSG00000110879	FS	Y/YX	104	Olfr1010	ENSMUST00000216831.2:c.319dup	ENSMUSP00000151209.1:p.Leu107ProfsTer209	H-2-Db	9	200	0	YSLRNKDVK	NA	SMMPMBEC	164.274	NA	NA	357	0.151	389.992	NA	NA	NA	593.51	NA	3742.6	NA	186.4747356	NA	164.2744417	M6	-1.614285714	-1.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1513	357	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.811688388	sgMsh2	cell line
chr2	86146018	86146018	GA	G	ENSMUST00000099909.1	NA	ENSMUSG00000075203	FS	S/X	239	Olfr1040	ENSMUST00000099909.1:c.715del	ENSMUSP00000097493.1:p.Ser239ProfsTer7	H-2-Db	9	8	4	KAFPLVHPI	NA	SMMPMBEC	409.798	NA	NA	538	0.162	473.396	NA	NA	NA	679.45	NA	527.4	NA	419.3918629	NA	409.7981561	M6	1.271428571	1.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.159	538	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.852997051	sgMsh2	cell line
chr2	76915603	76915603	A	G	ENSMUST00000099980.9	5	ENSMUSG00000051747	missense	V/A	5034	Ttn	ENSMUST00000099980.9:c.15101T>C	ENSMUSP00000097560.3:p.Val5034Ala	H-2-Db	9	10	2	NASRNLSEL	NVSRNLSEL	SMM	183.916	1176.576	6.397	202	0.05	271.57	2250.955	8.289	9774.46	689.86	3057.9	316.9	1176.57604	183.9162063	1444.009332	226.2403167	M6	-0.785714286	-0.785714286	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;Vardict	3	0.052	202	0	0	NA	2qC3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.278967589	sgMsh2	cell line
chr2	87802800	87802800	C	T	ENSMUST00000090708.1	NA	ENSMUSG00000068815	missense	T/I	137	Olfr1143	ENSMUST00000090708.1:c.410C>T	ENSMUSP00000088210.1:p.Thr137Ile	H-2-Db	10	2	10	QAISNPLLYI	QAISNPLLYT	NetMHC	29.98	1996.39	66.591	355	0.155	271.095	2118.552	7.815	1996.39	29.98	3906.9	51	2158.986864	491.1905468	2078.117023	633.3882463	M6	0.7	1.142857143	TRUE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.163	355	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.874456096	sgMsh2	cell line
chr2	87418564	87418564	CA	C	ENSMUST00000054974.1	NA	ENSMUSG00000043274	FS	Q/X	172	Olfr1123	ENSMUST00000054974.1:c.517del	ENSMUSP00000058786.1:p.Thr173HisfsTer35	H-2-Kb	8	32	0	ISHQYSNL	NA	NetMHC	3.34	NA	NA	369	0.119	3.438	NA	NA	NA	3.34	NA	5.1	NA	3.505419514	NA	3.370854446	M6	-1.328571429	-1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.127	369	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.681324688	sgMsh2	cell line
chr2	87252590	87252590	G	C	ENSMUST00000213513.1	5	ENSMUSG00000070856	missense	V/L	218	Olfr1115	ENSMUST00000213513.1:c.652G>C	ENSMUSP00000150221.1:p.Val218Leu	H-2-Kb	8	6	6	VVFIFLVL	VVFIFVVL	SMM	6.788	5.355	0.789	547	0.133	9.969	7.681	0.77	9.97	12.58	14.7	14.8	5.35475987	6.78797134	5.391877292	7.357664827	M6	3.728571429	3.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.136	547	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.72960754	sgMsh2	cell line
chr2	85753673	85753673	A	AC	ENSMUST00000216831.2	3	ENSMUSG00000110879	FS	Y/YX	104	Olfr1010	ENSMUST00000216831.2:c.319dup	ENSMUSP00000151209.1:p.Leu107ProfsTer209	H-2-Kb	8	126	0	ASYLFIIV	NA	NetMHC	13.01	NA	NA	357	0.151	28.387	NA	NA	NA	13.01	NA	26.8	NA	29.97367541	NA	36.20261985	M6	2.528571429	2.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1513	357	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.811688388	sgMsh2	cell line
chr2	85923475	85923475	T	C	ENSMUST00000217615.1	5	ENSMUSG00000042863	missense	V/A	69	Olfr1026	ENSMUST00000217615.1:c.206T>C	ENSMUSP00000150995.1:p.Val69Ala	H-2-Kb	8	6	6	SHLSFADL	SHLSFVDL	NetMHC	17.51	106.99	6.11	516	0.136	52.608	151.886	2.887	106.99	17.51	226.6	124.2	142.8038776	49.40148455	160.9681675	55.81359543	M6	0.671428571	0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.136	516	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.72960754	sgMsh2	cell line
chr2	86085539	86085539	TG	T	ENSMUST00000216886.1	5	ENSMUSG00000075205	FS	P/X	79	Olfr1037	ENSMUST00000216886.1:c.237del	ENSMUSP00000150319.1:p.Lys80SerfsTer26	H-2-Kb	8	9	4	VAPSFWRL	VAPKFLET	NetMHCpan	16.7	1284.3	76.904	197	0.107	23.918	2351.537	98.316	2294.61	21.67	1284.3	16.7	2882.305431	26.16616044	2408.463117	32.11737185	M6	0.085714286	0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.115	197	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.616947552	sgMsh2	cell line
chr2	52137428	52137428	AT	A	ENSMUST00000036934.11	5	ENSMUSG00000026950	FS	I/X	7097	Neb	ENSMUST00000036934.11:c.21289del	ENSMUSP00000047763.5:p.Ile7097SerfsTer9	H-2-Kb	8	11	1	SSVLYMTI	NA	NetMHC	21.86	NA	NA	62	0.274	84.519	NA	NA	NA	21.86	NA	31.4	NA	137.6385219	NA	137.9558114	M6	1.657142857	1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.293	62	0	0	NA	2qC1.1	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr2	85753673	85753673	A	AC	ENSMUST00000216831.2	3	ENSMUSG00000110879	FS	Y/YX	104	Olfr1010	ENSMUST00000216831.2:c.319dup	ENSMUSP00000151209.1:p.Leu107ProfsTer209	H-2-Kb	8	158	0	VTLYYGSI	NA	NetMHCpan	16.8	NA	NA	357	0.151	51.637	NA	NA	NA	26.23	NA	16.8	NA	86.04784535	NA	77.04420888	M6	0.542857143	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1513	357	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.811688388	sgMsh2	cell line
chr2	75891847	75891847	TA	T	ENSMUST00000047232.13	1	ENSMUSG00000042410	FS	L/X	460	Agps	ENSMUST00000047232.13:c.1385del	ENSMUSP00000041967.7:p.Lys462SerfsTer15	H-2-Kb	8	12	2	KSFILQSL	NA	NetMHCpan	35.3	NA	NA	107	0.262	53.579	NA	NA	NA	36.08	NA	35.3	NA	71.07878574	NA	81.98605697	M6	1.4	1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.247	107	86	2	0.023255814	2qC3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr2	83803240	83803240	A	T	ENSMUST00000028499.10	1	ENSMUSG00000027087	missense	M/L	1014	Itgav	ENSMUST00000028499.10:c.3040A>T	ENSMUSP00000028499.4:p.Met1014Leu	H-2-Kb	8	4	8	LVFVMYRL	LVFVMYRM	NetMHCpan	26.5	84.2	3.177	269	0.182	44.564	166.85	3.744	135.21	38.46	84.2	26.5	261.0597994	65.12383991	198.4906254	50.66872779	M6	1.585714286	1.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.18	269	257	22	0.085603113	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.965657038	sgMsh2	cell line
chr2	87149894	87149894	G	T	ENSMUST00000216378.1	5	ENSMUSG00000075158	missense	L/M	256	Olfr1111	ENSMUST00000216378.1:c.766C>A	ENSMUSP00000150760.1:p.Leu256Met	H-2-Kb	8	8	4	GTLMFMYL	GTLLFMYL	NetMHC	38.64	47.16	1.22	157	0.102	66.312	54.097	0.816	47.16	38.64	125.6	93.6	60.35871704	79.56828547	47.83436356	53.05667136	M6	1.742857143	1.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.112	157	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.600853268	sgMsh2	cell line
chr2	85786374	85786374	T	C	ENSMUST00000215945.1	5	ENSMUSG00000033850	missense	F/L	288	Olfr1015	ENSMUST00000215945.1:c.862T>C	ENSMUSP00000148957.1:p.Phe288Leu	H-2-Kb	8	4	8	INPLLNPL	INPLLNPF	NetMHC	54.38	1179.23	21.685	285	0.021	137.353	1709.61	12.447	1179.23	54.38	1406.7	150.9	2012.51905	123.8055176	2012.51905	160.228586	M6	0.171428571	0.271428571	FALSE	FALSE	FALSE	0	FALSE	2	Mutect2;Strelka2;Vardict	3	0.026	285	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.139483794	sgMsh2	cell line
chr2	86042133	86042133	G	A	ENSMUST00000218397.1	5	ENSMUSG00000045392	missense	A/T	273	Olfr1033	ENSMUST00000218397.1:c.817G>A	ENSMUSP00000151539.1:p.Ala273Thr	H-2-Kb	8	10	2	VTVFYTTV	VAVFYTTV	NetMHCpan	22.6	24.1	1.066	361	0.125	74.783	98.991	1.324	59.07	59.67	24.1	22.6	138.9120754	89.89592386	152.6651821	96.54727043	M6	1.114285714	1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.131	361	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.702783733	sgMsh2	cell line
chr2	85753673	85753673	A	AC	ENSMUST00000216831.2	3	ENSMUSG00000110879	FS	Y/YX	104	Olfr1010	ENSMUST00000216831.2:c.319dup	ENSMUSP00000151209.1:p.Leu107ProfsTer209	H-2-Kb	8	184	0	VSVFYTVV	NA	NetMHCpan	24.1	NA	NA	357	0.151	73.785	NA	NA	NA	70.88	NA	24.1	NA	76.69022289	NA	82.55435717	M6	1.8	1.8	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1513	357	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.811688388	sgMsh2	cell line
chr2	55437642	55437642	T	C	ENSMUST00000067101.9	1	ENSMUSG00000026824	missense	Y/H	148	Kcnj3	ENSMUST00000067101.9:c.442T>C	ENSMUSP00000063329.3:p.Tyr148His	H-2-Kb	8	7	5	IGYGHRYI	IGYGYRYI	NetMHCpan	87.5	14.1	0.161	92	0.207	112.821	23.035	0.204	8.7	88.95	14.1	87.5	35.29717922	136.691025	31.96980594	138.2738324	M6	-0.942857143	-0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.212	92	0	0	NA	2qC1.1	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr2	83803240	83803240	A	T	ENSMUST00000028499.10	1	ENSMUSG00000027087	missense	M/L	1014	Itgav	ENSMUST00000028499.10:c.3040A>T	ENSMUSP00000028499.4:p.Met1014Leu	H-2-Kb	8	7	5	VMYRLGFF	VMYRMGFF	NetMHCpan	53.3	49	0.919	269	0.182	165.952	152.3	0.918	85.45	98.16	49	53.3	261.0597994	270.2340064	219.1492557	233.7437461	M6	0.728571429	0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.18	269	257	22	0.085603113	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.965657038	sgMsh2	cell line
chr2	85799973	85799973	T	A	ENSMUST00000217410.2	3	ENSMUSG00000075209	missense	Q/L	99	Olfr1016	ENSMUST00000217410.2:c.296A>T	ENSMUSP00000149631.1:p.Gln99Leu	H-2-Kb	8	11	1	LFFFSAGL	QFFFSAGL	NetMHCpan	47.8	94.6	1.979	283	0.166	89.039	120.397	1.352	127.1	103.3	94.6	47.8	113.6946424	83.51029157	192.6371303	94.56708451	M6	1.828571429	1.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.169	283	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.906644664	sgMsh2	cell line
chr2	86483115	86483115	G	T	ENSMUST00000217292.2	5	ENSMUSG00000111772	missense	T/N	209	Olfr228	ENSMUST00000217292.2:c.626C>A	ENSMUSP00000149449.1:p.Thr209Asn	H-2-Kb	8	7	5	INLINSPL	INLITSPL	NetMHCpan	94.6	46.6	0.493	258	0.124	102.154	73.158	0.716	49.99	135.69	46.6	94.6	96.32521787	101.3304567	98.79614526	102.9769442	M6	0.385714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.131	258	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.702783733	sgMsh2	cell line
chr2	85753673	85753673	A	AC	ENSMUST00000216831.2	3	ENSMUSG00000110879	FS	Y/YX	104	Olfr1010	ENSMUST00000216831.2:c.319dup	ENSMUSP00000151209.1:p.Leu107ProfsTer209	H-2-Kb	8	183	0	VVSVFYTV	NA	NetMHCpan	97.3	NA	NA	357	0.151	194.687	NA	NA	NA	139.49	NA	97.3	NA	249.8848923	NA	266.5262568	M6	1.8	1.8	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1513	357	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.811688388	sgMsh2	cell line
chr2	87252877	87252877	A	AG	ENSMUST00000213513.1	5	ENSMUSG00000070856	FS	-/X	313-314	Olfr1115	ENSMUST00000213513.1:c.943dup	ENSMUSP00000150221.1:p.Ala315GlyfsTer16	H-2-Kb	8	17	0	IIYQIVSI	NA	NetMHCpan	77.2	NA	NA	214	0.131	172.093	NA	NA	NA	157.23	NA	77.2	NA	258.6663888	NA	186.956255	M6	1.728571429	1.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.133	214	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.713513256	sgMsh2	cell line
chr2	85753673	85753673	A	AC	ENSMUST00000216831.2	3	ENSMUSG00000110879	FS	Y/YX	104	Olfr1010	ENSMUST00000216831.2:c.319dup	ENSMUSP00000151209.1:p.Leu107ProfsTer209	H-2-Kb	8	191	0	VIPMLNPM	NA	NetMHC	171.81	NA	NA	357	0.151	421.689	NA	NA	NA	171.81	NA	292.9	NA	550.4780419	NA	596.6779652	M6	0.771428571	1.1	FALSE	FALSE	FALSE	0	FALSE	1	Strelka2;Vardict	2	0.1513	357	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.811688388	sgMsh2	cell line
chr2	87212904	87212904	A	T	ENSMUST00000215611.1	5	ENSMUSG00000070857	missense	K/I	4	Olfr1113	ENSMUST00000215611.1:c.11A>T	ENSMUSP00000150991.1:p.Lys4Ile	H-2-Kb	8	1	4	MQSIYVNL	MQSKYVNL	NetMHCpan	125	156.4	1.251	394	0.18	166.743	189.039	1.134	185.44	177.98	156.4	125	192.6371303	156.5813381	207.8452003	176.9049561	M6	0.485714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.18	394	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.965657038	sgMsh2	cell line
chr2	65763849	65763849	T	C	ENSMUST00000028377.13	5	ENSMUSG00000075318	missense	S/P	1681	Scn2a	ENSMUST00000028377.13:c.5041T>C	ENSMUSP00000028377.7:p.Ser1681Pro	H-2-Kb	8	9	3	GMPNFAYV	GMSNFAYV	NetMHC	188.79	1429.79	7.573	364	0.192	469.967	1409.455	2.999	1429.79	188.79	1598	782.9	1389.120754	518.4895408	1017.981768	421.444121	M6	0.614285714	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.195	364	0	0	NA	2qC1.3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr2	85753673	85753673	A	AC	ENSMUST00000216831.2	3	ENSMUSG00000110879	FS	Y/YX	104	Olfr1010	ENSMUST00000216831.2:c.319dup	ENSMUSP00000151209.1:p.Leu107ProfsTer209	H-2-Kb	8	17	0	LAYSECYL	NA	NetMHCpan	181.2	NA	NA	357	0.151	198.632	NA	NA	NA	192.27	NA	181.2	NA	282.3189304	NA	204.9934573	M6	0.171428571	0.171428571	FALSE	FALSE	FALSE	1	FALSE	0	Strelka2;Vardict	2	0.1513	357	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.811688388	sgMsh2	cell line
chr2	76732118	76732118	GT	G	ENSMUST00000111846.8	5	ENSMUSG00000051747	FS	K/X	27048	Ttn	ENSMUST00000111846.8:c.81144del	ENSMUSP00000107477.2:p.Lys27048AsnfsTer39	H-2-Kb	8	24	0	KIWKSASL	NA	SMMPMBEC	197.124	NA	NA	222	0.243	216.815	NA	NA	NA	218.48	NA	312.2	NA	215.149331	NA	197.1242255	M6	0.528571429	0.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.241	222	0	0	NA	2qC3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr2	85753673	85753673	A	AC	ENSMUST00000216831.2	3	ENSMUSG00000110879	FS	Y/YX	104	Olfr1010	ENSMUST00000216831.2:c.319dup	ENSMUSP00000151209.1:p.Leu107ProfsTer209	H-2-Kb	8	106	0	QAVLYFIL	NA	NetMHC	263.65	NA	NA	357	0.151	352.33	NA	NA	NA	263.65	NA	273.4	NA	431.2608157	NA	620.4974485	M6	2.8	2.8	TRUE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1513	357	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.811688388	sgMsh2	cell line
chr2	85799973	85799973	T	A	ENSMUST00000217410.2	3	ENSMUSG00000075209	missense	Q/L	99	Olfr1016	ENSMUST00000217410.2:c.296A>T	ENSMUSP00000149631.1:p.Gln99Leu	H-2-Kb	8	9	3	VALFFFSA	VAQFFFSA	NetMHCpan	119	226.9	1.907	283	0.166	194.024	494.393	2.548	849.18	276.29	226.9	119	475.0507412	198.4906254	513.7360001	189.5570756	M6	2.142857143	2.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.169	283	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.906644664	sgMsh2	cell line
chr2	84612086	84612086	CT	C	ENSMUST00000189772.1	5	ENSMUSG00000101645	FS	K/X	634	Gm28635	ENSMUST00000189772.1:c.1901del	ENSMUSP00000141166.1:p.Lys634SerfsTer48	H-2-Kb	8	42	0	CEYTFHSL	NA	SMM	67.103	NA	NA	246	0.028	164.226	NA	NA	NA	320.59	NA	242.8	NA	67.10270075	NA	85.65249141	M6	-0.414285714	-0.414285714	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.031	246	852	0	0	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.166307601	sgMsh2	cell line
chr2	87418564	87418564	CA	C	ENSMUST00000054974.1	NA	ENSMUSG00000043274	FS	Q/X	172	Olfr1123	ENSMUST00000054974.1:c.517del	ENSMUSP00000058786.1:p.Thr173HisfsTer35	H-2-Kb	8	16	0	SLCLFVAL	NA	SMMPMBEC	74.087	NA	NA	369	0.119	189.772	NA	NA	NA	350.34	NA	292.7	NA	86.84403626	NA	74.08665723	M6	3.242857143	3.242857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.127	369	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.681324688	sgMsh2	cell line
chr2	85753673	85753673	A	AC	ENSMUST00000216831.2	3	ENSMUSG00000110879	FS	Y/YX	104	Olfr1010	ENSMUST00000216831.2:c.319dup	ENSMUSP00000151209.1:p.Leu107ProfsTer209	H-2-Kb	8	122	0	VLILASYL	NA	NetMHCpan	203.5	NA	NA	357	0.151	318.606	NA	NA	NA	421.64	NA	203.5	NA	321.1737185	NA	316.0385059	M6	2.228571429	2.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1513	357	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.811688388	sgMsh2	cell line
chr2	86085539	86085539	TG	T	ENSMUST00000216886.1	5	ENSMUSG00000075205	FS	P/X	79	Olfr1037	ENSMUST00000216886.1:c.237del	ENSMUSP00000150319.1:p.Lys80SerfsTer26	H-2-Kb	8	12	1	SFWRLSSV	NA	NetMHCpan	321.7	NA	NA	197	0.107	355.839	NA	NA	NA	442.87	NA	321.7	NA	352.9717922	NA	358.7071224	M6	0.542857143	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.115	197	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.616947552	sgMsh2	cell line
chr2	73568222	73568222	A	G	ENSMUST00000028515.3	1	ENSMUSG00000027107	missense	V/A	291	Chrna1	ENSMUST00000028515.3:c.872T>C	ENSMUSP00000028515.3:p.Val291Ala	H-2-Kb	8	6	6	STSSAAPL	STSSAVPL	SMM	311.702	901.032	2.891	135	0.215	403.465	1443.597	3.578	1873.89	455.58	2427.9	1290.8	901.0315536	311.7022951	1013.304567	351.3500341	M6	0.5	0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.233	135	0	0	NA	2qC3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr2	86170996	86170996	C	T	ENSMUST00000215171.1	5	ENSMUSG00000075200	missense	A/T	274	Olfr1044	ENSMUST00000215171.1:c.820G>A	ENSMUSP00000150199.1:p.Ala274Thr	H-2-Kb	8	10	2	MTSVFYTV	MASVFYTV	NetMHCpan	238.2	211.8	0.889	229	0.131	362.779	490.422	1.352	456.35	458.08	211.8	238.2	524.4933667	339.4220093	610.5763804	386.1357391	M6	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.143	229	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.767160869	sgMsh2	cell line
chr2	76732118	76732118	GT	G	ENSMUST00000111846.8	5	ENSMUSG00000051747	FS	K/X	27048	Ttn	ENSMUST00000111846.8:c.81144del	ENSMUSP00000107477.2:p.Lys27048AsnfsTer39	H-2-Kb	8	29	0	ASLQLPKL	NA	SMMPMBEC	291.568	NA	NA	222	0.243	323.533	NA	NA	NA	467.13	NA	352.8	NA	294.2659418	NA	291.5680954	M6	0.228571429	0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.241	222	0	0	NA	2qC3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr2	67513258	67513258	GA	G	ENSMUST00000028410.3	1	ENSMUSG00000027022	FS	K/X	1948	Xirp2	ENSMUST00000028410.3:c.5846del	ENSMUSP00000028410.3:p.Asn1949MetfsTer20	H-2-Kb	8	11	2	KMRRAFNL	NA	NetMHCpan	331.8	NA	NA	80	0.212	482.42	NA	NA	NA	533.58	NA	331.8	NA	431.2608157	NA	544.1767718	M6	-0.314285714	-0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.236	80	0	0	NA	2qC1.3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr2	86170996	86170996	C	T	ENSMUST00000215171.1	5	ENSMUSG00000075200	missense	A/T	274	Olfr1044	ENSMUST00000215171.1:c.820G>A	ENSMUSP00000150199.1:p.Ala274Thr	H-2-Kb	8	11	1	TSVFYTVI	ASVFYTVI	NetMHCpan	83.2	92.1	1.107	229	0.131	383.911	486.485	1.267	737.68	618.3	92.1	83.2	524.4933667	415.6616909	448.476819	352.1599796	M6	1.842857143	1.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.143	229	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.767160869	sgMsh2	cell line
chr2	87418564	87418564	CA	C	ENSMUST00000054974.1	NA	ENSMUSG00000043274	FS	Q/X	172	Olfr1123	ENSMUST00000054974.1:c.517del	ENSMUSP00000058786.1:p.Thr173HisfsTer35	H-2-Kb	9	32	0	ISHQYSNLL	NA	NetMHC	24.78	NA	NA	369	0.119	68.39	NA	NA	NA	24.78	NA	37.9	NA	98.88035114	NA	125.9650316	M6	-0.671428571	-0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.127	369	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.681324688	sgMsh2	cell line
chr2	85753673	85753673	A	AC	ENSMUST00000216831.2	3	ENSMUSG00000110879	FS	Y/YX	104	Olfr1010	ENSMUST00000216831.2:c.319dup	ENSMUSP00000151209.1:p.Leu107ProfsTer209	H-2-Kb	9	28	0	MAYDRYVAI	NA	NetMHCpan	14.4	NA	NA	357	0.151	30.259	NA	NA	NA	27.08	NA	14.4	NA	39.27443988	NA	33.43874735	M6	-0.014285714	-0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1513	357	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.811688388	sgMsh2	cell line
chr2	85799973	85799973	T	A	ENSMUST00000217410.2	3	ENSMUSG00000075209	missense	Q/L	99	Olfr1016	ENSMUST00000217410.2:c.296A>T	ENSMUSP00000149631.1:p.Gln99Leu	H-2-Kb	9	10	2	ALFFFSAGL	AQFFFSAGL	NetMHCpan	19.9	13.5	0.678	283	0.166	88.676	58.879	0.664	12.74	27.69	13.5	19.9	104.2581466	149.6614677	137.1671136	173.0812408	M6	1.828571429	2.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.169	283	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.906644664	sgMsh2	cell line
chr2	87418564	87418564	CA	C	ENSMUST00000054974.1	NA	ENSMUSG00000043274	FS	Q/X	172	Olfr1123	ENSMUST00000054974.1:c.517del	ENSMUSP00000058786.1:p.Thr173HisfsTer35	H-2-Kb	9	31	0	VISHQYSNL	NA	NetMHC	46.03	NA	NA	369	0.119	153.473	NA	NA	NA	46.03	NA	113.7	NA	193.2457716	NA	213.4273146	M6	-1.328571429	-0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.127	369	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.681324688	sgMsh2	cell line
chr2	87252590	87252590	G	C	ENSMUST00000213513.1	5	ENSMUSG00000070856	missense	V/L	218	Olfr1115	ENSMUST00000213513.1:c.652G>C	ENSMUSP00000150221.1:p.Val218Leu	H-2-Kb	9	6	6	VVFIFLVLI	VVFIFVVLI	SMM	37.767	73.639	1.95	547	0.133	47.234	71.591	1.516	63.58	53.8	235.6	218.1	73.63935909	37.76678362	69.54245209	40.66773641	M6	3.771428571	3.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.136	547	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.72960754	sgMsh2	cell line
chr2	85923475	85923475	T	C	ENSMUST00000217615.1	5	ENSMUSG00000042863	missense	V/A	69	Olfr1026	ENSMUST00000217615.1:c.206T>C	ENSMUSP00000150995.1:p.Val69Ala	H-2-Kb	9	5	7	LSHLSFADL	LSHLSFVDL	NetMHC	57.08	299.86	5.253	516	0.136	205.392	360.403	1.755	299.86	57.08	324.3	118.2	520.1277201	360.6699835	396.5062159	292.583614	M6	0.671428571	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.136	516	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.72960754	sgMsh2	cell line
chr2	86042133	86042133	G	A	ENSMUST00000218397.1	5	ENSMUSG00000045392	missense	A/T	273	Olfr1033	ENSMUST00000218397.1:c.817G>A	ENSMUSP00000151539.1:p.Ala273Thr	H-2-Kb	9	9	3	MVTVFYTTV	MVAVFYTTV	NetMHC	66.55	59.05	0.887	361	0.125	134.859	97.929	0.726	59.05	66.55	49.9	70.6	136.8075294	199.1177609	205.7074402	273.0549161	M6	1.114285714	1.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.131	361	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.702783733	sgMsh2	cell line
chr2	85799973	85799973	T	A	ENSMUST00000217410.2	3	ENSMUSG00000075209	missense	Q/L	99	Olfr1016	ENSMUST00000217410.2:c.296A>T	ENSMUSP00000149631.1:p.Gln99Leu	H-2-Kb	9	3	9	ISFASCVAL	ISFASCVAQ	NetMHCpan	41.2	6248.9	151.672	283	0.166	118.535	2718.814	22.937	4304.94	70.25	6248.9	41.2	1132.687219	216.825322	783.8807509	166.8207233	M6	2.3	2.3	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.169	283	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.906644664	sgMsh2	cell line
chr2	87645506	87645506	A	C	ENSMUST00000217368.1	5	ENSMUSG00000075155	missense	C/G	206	Olfr1133	ENSMUST00000217368.1:c.616T>G	ENSMUSP00000149460.1:p.Cys206Gly	H-2-Kb	9	4	8	VMFTLIGGV	VMFTLIGCV	NetMHC	79.18	384.39	4.855	547	0.122	142.014	310.521	2.187	384.39	79.18	387.5	139.4	236.6519024	145.2479461	186.7454375	144.6272072	M6	1.971428571	2.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.125	547	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.670595166	sgMsh2	cell line
chr2	71421695	71421695	T	C	ENSMUST00000028408.2	1	ENSMUSG00000027018	missense	V/A	257	Hat1	ENSMUST00000028408.2:c.770T>C	ENSMUSP00000028408.2:p.Val257Ala	H-2-Kb	9	10	2	TAHRYYISF	TVHRYYISF	NetMHCpan	47.9	55.5	1.159	71	0.225	103.154	124.62	1.208	116.73	91.69	55.5	47.9	142.5968723	126.7972983	132.5104107	114.6172542	M6	-0.542857143	-0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.255	71	143	21	0.146853147	2qC2	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr2	85753673	85753673	A	AC	ENSMUST00000216831.2	3	ENSMUSG00000110879	FS	Y/YX	104	Olfr1010	ENSMUST00000216831.2:c.319dup	ENSMUSP00000151209.1:p.Leu107ProfsTer209	H-2-Kb	9	158	0	VTLYYGSIL	NA	NetMHCpan	54.6	NA	NA	357	0.151	138.762	NA	NA	NA	98.83	NA	54.6	NA	178.6940122	NA	188.039895	M6	1.185714286	1.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1513	357	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.811688388	sgMsh2	cell line
chr2	85753673	85753673	A	AC	ENSMUST00000216831.2	3	ENSMUSG00000110879	FS	Y/YX	104	Olfr1010	ENSMUST00000216831.2:c.319dup	ENSMUSP00000151209.1:p.Leu107ProfsTer209	H-2-Kb	9	183	0	VVSVFYTVV	NA	NetMHCpan	61.7	NA	NA	357	0.151	133.194	NA	NA	NA	120.47	NA	61.7	NA	145.9183802	NA	157.8519677	M6	1.8	1.8	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1513	357	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.811688388	sgMsh2	cell line
chr2	85753673	85753673	A	AC	ENSMUST00000216831.2	3	ENSMUSG00000110879	FS	Y/YX	104	Olfr1010	ENSMUST00000216831.2:c.319dup	ENSMUSP00000151209.1:p.Leu107ProfsTer209	H-2-Kb	9	190	0	VVIPMLNPM	NA	SMM	119.98	NA	NA	357	0.151	129.345	NA	NA	NA	129.49	NA	129.2	NA	119.9803156	NA	172.2860048	M6	0.771428571	1.928571429	FALSE	FALSE	FALSE	0	FALSE	1	Strelka2;Vardict	2	0.1513	357	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.811688388	sgMsh2	cell line
chr2	86131294	86131294	T	C	ENSMUST00000216566.2	5	ENSMUSG00000075204	missense	Y/C	123	Olfr1039	ENSMUST00000216566.2:c.368A>G	ENSMUSP00000149830.1:p.Tyr123Cys	H-2-Kb	9	6	6	MAYDRCVAI	MAYDRYVAI	NetMHCpan	132.7	14.4	0.109	558	0.158	145.305	30.259	0.208	27.08	145.65	14.4	132.7	39.27443988	184.1238299	33.43874735	144.9606074	M6	0.528571429	0.528571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.156	558	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.836902767	sgMsh2	cell line
chr2	87149894	87149894	G	T	ENSMUST00000216378.1	5	ENSMUSG00000075158	missense	L/M	256	Olfr1111	ENSMUST00000216378.1:c.766C>A	ENSMUSP00000150760.1:p.Leu256Met	H-2-Kb	9	3	9	VTLFYGTLM	VTLFYGTLL	NetMHCpan	69.1	32.2	0.466	157	0.102	171.989	108.473	0.631	78.51	156.37	32.2	69.1	156.7147954	206.1151905	138.4363053	187.6074152	M6	1.414285714	1.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.112	157	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.600853268	sgMsh2	cell line
chr2	85753673	85753673	A	AC	ENSMUST00000216831.2	3	ENSMUSG00000110879	FS	Y/YX	104	Olfr1010	ENSMUST00000216831.2:c.319dup	ENSMUSP00000151209.1:p.Leu107ProfsTer209	H-2-Kb	9	157	0	AVTLYYGSI	NA	NetMHCpan	156.6	NA	NA	357	0.151	240.43	NA	NA	NA	170.94	NA	156.6	NA	356.5414284	NA	309.920283	M6	0.542857143	0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1513	357	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.811688388	sgMsh2	cell line
chr2	76713049	76713049	T	C	ENSMUST00000111846.8	5	ENSMUSG00000051747	missense	T/A	31452	Ttn	ENSMUST00000111846.8:c.94354A>G	ENSMUSP00000107477.2:p.Thr31452Ala	H-2-Kb	9	11	1	AAPEYYAPE	TAPEYYAPE	NetMHC	172.14	138.74	0.806	190	0.258	194.053	159.64	0.823	138.74	172.14	746	697.8	170.2589693	200.4979793	149.021867	187.6074152	M6	-1.571428571	-0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.256	190	0	0	NA	2qC3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr2	85753673	85753673	A	AC	ENSMUST00000216831.2	3	ENSMUSG00000110879	FS	Y/YX	104	Olfr1010	ENSMUST00000216831.2:c.319dup	ENSMUSP00000151209.1:p.Leu107ProfsTer209	H-2-Kb	9	55	0	VAASYLGGF	NA	SMM	135.866	NA	NA	357	0.151	189.636	NA	NA	NA	173.09	NA	243.3	NA	135.865753	NA	206.1816449	M6	0.785714286	1.3	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1513	357	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.811688388	sgMsh2	cell line
chr2	87149894	87149894	G	T	ENSMUST00000216378.1	5	ENSMUSG00000075158	missense	L/M	256	Olfr1111	ENSMUST00000216378.1:c.766C>A	ENSMUSP00000150760.1:p.Leu256Met	H-2-Kb	9	7	5	YGTLMFMYL	YGTLLFMYL	NetMHC	190.96	357.16	1.87	157	0.102	445.848	684.384	1.535	357.16	190.96	375.4	251.8	993.367621	639.8968908	1109.813491	782.0778752	M6	1.742857143	1.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.112	157	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.600853268	sgMsh2	cell line
chr2	85753673	85753673	A	AC	ENSMUST00000216831.2	3	ENSMUSG00000110879	FS	Y/YX	104	Olfr1010	ENSMUST00000216831.2:c.319dup	ENSMUSP00000151209.1:p.Leu107ProfsTer209	H-2-Kb	9	17	0	LAYSECYLL	NA	SMM	163.347	NA	NA	357	0.151	204.235	NA	NA	NA	193.67	NA	214.8	NA	163.3465627	NA	265.6134116	M6	0.457142857	0.457142857	FALSE	FALSE	FALSE	1	FALSE	0	Strelka2;Vardict	2	0.1513	357	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.811688388	sgMsh2	cell line
chr2	87418564	87418564	CA	C	ENSMUST00000054974.1	NA	ENSMUSG00000043274	FS	Q/X	172	Olfr1123	ENSMUST00000054974.1:c.517del	ENSMUSP00000058786.1:p.Thr173HisfsTer35	H-2-Kb	9	15	0	FSLCLFVAL	NA	SMMPMBEC	192.42	NA	NA	369	0.119	206.906	NA	NA	NA	193.97	NA	286.4	NA	219.8416627	NA	192.4199068	M6	3.242857143	3.242857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.127	369	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.681324688	sgMsh2	cell line
chr2	86923173	86923173	A	G	ENSMUST00000111574.2	3	ENSMUSG00000075169	missense	Y/H	120	Olfr1098	ENSMUST00000111574.2:c.358T>C	ENSMUSP00000107200.1:p.Tyr120His	H-2-Kb	9	9	3	MAHDRYVAI	MAYDRYVAI	SMMPMBEC	181.656	33.439	0.184	505	0.127	201.4	30.259	0.15	27.08	200.2	14.4	202.6	39.27443988	223.4138023	33.43874735	181.6561058	M6	-0.285714286	-0.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.132	505	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.708148495	sgMsh2	cell line
chr2	85753673	85753673	A	AC	ENSMUST00000216831.2	3	ENSMUSG00000110879	FS	Y/YX	104	Olfr1010	ENSMUST00000216831.2:c.319dup	ENSMUSP00000151209.1:p.Leu107ProfsTer209	H-2-Kb	9	83	0	IIDDFFCDL	NA	NetMHC	212.5	NA	NA	357	0.151	268.611	NA	NA	NA	212.5	NA	423.1	NA	290.4758291	NA	246.7459312	M6	0.2	1.442857143	FALSE	FALSE	FALSE	1	FALSE	0	Strelka2;Vardict	2	0.1513	357	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.811688388	sgMsh2	cell line
chr2	87418564	87418564	CA	C	ENSMUST00000054974.1	NA	ENSMUSG00000043274	FS	Q/X	172	Olfr1123	ENSMUST00000054974.1:c.517del	ENSMUSP00000058786.1:p.Thr173HisfsTer35	H-2-Kb	9	37	0	SNLLVVTHL	NA	NetMHCpan	181.8	NA	NA	369	0.119	482.157	NA	NA	NA	214.23	NA	181.8	NA	750.0841699	NA	755.5270188	M6	2.271428571	2.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.127	369	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.681324688	sgMsh2	cell line
chr2	87149894	87149894	G	T	ENSMUST00000216378.1	5	ENSMUSG00000075158	missense	L/M	256	Olfr1111	ENSMUST00000216378.1:c.766C>A	ENSMUSP00000150760.1:p.Leu256Met	H-2-Kb	9	10	2	LMFMYLRPT	LLFMYLRPT	SMMPMBEC	139.717	836.084	5.984	157	0.102	164.772	997.578	6.054	1583.65	214.37	740.9	177.8	1159.070894	151.7434661	836.0841685	139.7172407	M6	0.057142857	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.112	157	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.600853268	sgMsh2	cell line
chr2	86181246	86181246	C	CA	ENSMUST00000215138.2	5	ENSMUSG00000075199	FS	L/FX	288	Olfr52	ENSMUST00000215138.2:c.863dup	ENSMUSP00000150060.1:p.Leu288PhefsTer21	H-2-Kb	9	3	9	VIIPMLNPF	VIIPMLNPL	SMM	158.895	94.213	0.593	193	0.114	244.521	83.706	0.342	56.36	265.04	73.2	301.4	94.21281926	158.8949154	129.4941055	224.0010221	M6	0.9	1.971428571	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;Vardict	3	0.121	193	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.64913612	sgMsh2	cell line
chr2	83803240	83803240	A	T	ENSMUST00000028499.10	1	ENSMUSG00000027087	missense	M/L	1014	Itgav	ENSMUST00000028499.10:c.3040A>T	ENSMUSP00000028499.4:p.Met1014Leu	H-2-Kb	9	5	7	VFVMYRLGF	VFVMYRMGF	NetMHC	295.03	169.93	0.576	269	0.182	362.064	348.471	0.962	169.93	295.03	481.2	705.8	331.9785319	354.0870144	364.9639766	370.0411313	M6	0.928571429	1.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.18	269	257	22	0.085603113	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.965657038	sgMsh2	cell line
chr2	85753673	85753673	A	AC	ENSMUST00000216831.2	3	ENSMUSG00000110879	FS	Y/YX	104	Olfr1010	ENSMUST00000216831.2:c.319dup	ENSMUSP00000151209.1:p.Leu107ProfsTer209	H-2-Kb	9	186	0	VFYTVVIPM	NA	SMMPMBEC	221.437	NA	NA	357	0.151	264.61	NA	NA	NA	303.22	NA	372.3	NA	226.0008122	NA	221.4369036	M6	1.6	2.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1513	357	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.811688388	sgMsh2	cell line
chr2	84612086	84612086	CT	C	ENSMUST00000189772.1	5	ENSMUSG00000101645	FS	K/X	634	Gm28635	ENSMUST00000189772.1:c.1901del	ENSMUSP00000141166.1:p.Lys634SerfsTer48	H-2-Kb	9	22	0	ISLKELVLL	NA	NetMHCpan	270.3	NA	NA	246	0.028	297.293	NA	NA	NA	304.61	NA	270.3	NA	295.876178	NA	298.7101638	M6	1.714285714	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.031	246	852	0	0	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.166307601	sgMsh2	cell line
chr2	85799973	85799973	T	A	ENSMUST00000217410.2	3	ENSMUSG00000075209	missense	Q/L	99	Olfr1016	ENSMUST00000217410.2:c.296A>T	ENSMUSP00000149631.1:p.Gln99Leu	H-2-Kb	9	9	3	VALFFFSAG	VAQFFFSAG	SMMPMBEC	123.381	326.024	2.642	283	0.166	160.728	366.586	2.281	661.85	317.36	395.8	189.9	337.3727491	131.5558	326.0243217	123.381487	M6	1.828571429	2.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.169	283	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.906644664	sgMsh2	cell line
chr2	87418564	87418564	CA	C	ENSMUST00000054974.1	NA	ENSMUSG00000043274	FS	Q/X	172	Olfr1123	ENSMUST00000054974.1:c.517del	ENSMUSP00000058786.1:p.Thr173HisfsTer35	H-2-Kb	9	7	6	VVIGQHTRF	VVIGQTYQI	SMM	355.721	1040.184	2.924	369	0.119	366.693	1316.506	3.59	1587.69	376.73	2075.4	782.4	1040.183595	355.7214058	1045.321782	356.6563823	M6	-0.714285714	0.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.127	369	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.681324688	sgMsh2	cell line
chr2	85868829	85868829	C	CA	ENSMUST00000054736.3	NA	ENSMUSG00000057761	FS	P/PX	79	Olfr1022	ENSMUST00000054736.3:c.239dup	ENSMUSP00000059312.3:p.Asn80LysfsTer32	H-2-Kb	9	28	0	WMLHTVSPL	NA	SMM	450.931	NA	NA	709	0.147	489.579	NA	NA	NA	460.06	NA	635.3	NA	450.9309038	NA	519.0987702	M6	0.785714286	0.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.149	709	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.799349437	sgMsh2	cell line
chr2	85786374	85786374	T	C	ENSMUST00000215945.1	5	ENSMUSG00000033850	missense	F/L	288	Olfr1015	ENSMUST00000215945.1:c.862T>C	ENSMUSP00000148957.1:p.Phe288Leu	H-2-Kb	9	3	9	IINPLLNPL	IINPLLNPF	NetMHCpan	438.7	1653.4	3.769	285	0.021	476.268	1172.73	2.462	1420.23	481.44	1653.4	438.7	794.5294511	471.0966327	925.2306262	534.872168	M6	0.171428571	1.142857143	FALSE	FALSE	FALSE	0	FALSE	2	Mutect2;Strelka2;Vardict	3	0.026	285	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.139483794	sgMsh2	cell line
chr2	87656102	87656102	A	AT	ENSMUST00000135875.3	5	ENSMUSG00000111747	FS	M/NX	273	Olfr1134	ENSMUST00000135875.3:c.817dup	ENSMUSP00000150837.1:p.Met273AsnfsTer23	H-2-Kb	9	20	0	DSYVKPTYL	NA	SMM	254.748	NA	NA	457	0.158	435.96	NA	NA	NA	486.22	NA	545.4	NA	254.7475407	NA	385.7003207	M6	-0.114285714	-0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.165	457	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.885185619	sgMsh2	cell line
chr2	86170996	86170996	C	T	ENSMUST00000215171.1	5	ENSMUSG00000075200	missense	A/T	274	Olfr1044	ENSMUST00000215171.1:c.820G>A	ENSMUSP00000150199.1:p.Ala274Thr	H-2-Kb	9	10	2	MTSVFYTVI	MASVFYTVI	NetMHCpan	104.1	93.9	0.902	229	0.131	488.601	366.17	0.749	403.78	514.62	93.9	104.1	367.3753391	505.9527957	364.9639766	471.2485208	M6	1.842857143	1.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.143	229	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.767160869	sgMsh2	cell line
chr2	86085539	86085539	TG	T	ENSMUST00000216886.1	5	ENSMUSG00000075205	FS	P/X	79	Olfr1037	ENSMUST00000216886.1:c.237del	ENSMUSP00000150319.1:p.Lys80SerfsTer26	H-2-Kb	9	11	2	PSFWRLSSV	NA	SMM	157.438	NA	NA	197	0.107	356.241	NA	NA	NA	572.63	NA	539.4	NA	157.438158	NA	173.0812408	M6	0.542857143	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.115	197	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.616947552	sgMsh2	cell line
chr2	85753673	85753673	A	AC	ENSMUST00000216831.2	3	ENSMUSG00000110879	FS	Y/YX	104	Olfr1010	ENSMUST00000216831.2:c.319dup	ENSMUSP00000151209.1:p.Leu107ProfsTer209	H-2-Kb	9	184	0	VSVFYTVVI	NA	NetMHCpan	188.9	NA	NA	357	0.151	304.563	NA	NA	NA	644.58	NA	188.9	NA	360.6699835	NA	248.4562923	M6	2.557142857	2.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1513	357	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.811688388	sgMsh2	cell line
chr2	86042133	86042133	G	A	ENSMUST00000218397.1	5	ENSMUSG00000045392	missense	A/T	273	Olfr1033	ENSMUST00000218397.1:c.817G>A	ENSMUSP00000151539.1:p.Ala273Thr	H-2-Kb	9	10	2	VTVFYTTVI	VAVFYTTVI	NetMHCpan	210	167.6	0.798	361	0.125	482.177	359.921	0.746	537.74	716.72	167.6	210	405.6112574	558.6116644	314.2317036	405.7420321	M6	1.857142857	1.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.131	361	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.702783733	sgMsh2	cell line
chr2	85753673	85753673	A	AC	ENSMUST00000216831.2	3	ENSMUSG00000110879	FS	Y/YX	104	Olfr1010	ENSMUST00000216831.2:c.319dup	ENSMUSP00000151209.1:p.Leu107ProfsTer209	H-2-Kb	9	6	9	AQFFFYPPP	AQFFFYPPL	SMM	93.996	20.376	0.217	357	0.151	340.744	13.783	0.04	7.19	1056.23	5.9	524	20.37558094	93.99613579	21.39193154	157.4889183	M6	0.328571429	0.542857143	FALSE	FALSE	TRUE	0	FALSE	0	Strelka2;Vardict	2	0.1513	357	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.811688388	sgMsh2	cell line
chr2	90139121	90139121	A	C	ENSMUST00000215153.2	2	ENSMUSG00000075066	missense	V/G	6	Olfr32	ENSMUST00000215153.2:c.17T>G	ENSMUSP00000150246.1:p.Val6Gly	H-2-Db	9	1	6	MAFVNGTEL	MAFVNVTEL	NetMHCpan	5.5	5.1	0.927	383	0.125	14.228	13.219	0.929	9.55	8.2	5.1	5.5	20.21249847	23.04729708	16.88768035	20.25676081	M6	0.385714286	0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.125	383	0	0	NA	2qE1	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.670595166	sgMsh2	cell line
chr2	88006632	88006632	T	G	ENSMUST00000099839.3	NA	ENSMUSG00000075141	missense	M/L	49	Olfr1160	ENSMUST00000099839.3:c.145A>C	ENSMUSP00000097427.3:p.Met49Leu	H-2-Db	9	3	9	FSIYSITLL	FSIYSITLM	NetMHC	196.44	127.02	0.647	470	0.038	334.623	267.366	0.799	127.02	196.44	241.9	253.7	292.8329887	415.5468552	336.9535219	439.1066356	M6	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.041	470	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.219955214	sgMsh2	cell line
chr2	88006632	88006632	T	G	ENSMUST00000099839.3	NA	ENSMUSG00000075141	missense	M/L	49	Olfr1160	ENSMUST00000099839.3:c.145A>C	ENSMUSP00000097427.3:p.Met49Leu	H-2-Db	9	6	6	YSITLLGNI	YSITLMGNI	NetMHC	256.69	185.65	0.723	470	0.038	487.354	413.213	0.848	185.65	256.69	1299.1	1238	453.5445995	515.9647117	372.8807814	458.7435806	M6	1.714285714	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.041	470	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.219955214	sgMsh2	cell line
chr2	88392008	88392008	T	A	ENSMUST00000214040.2	5	ENSMUSG00000056995	missense	F/I	254	Olfr1178	ENSMUST00000214040.2:c.760T>A	ENSMUSP00000150036.1:p.Phe254Ile	H-2-Db	9	6	6	FAPLLIIYI	FAPLLFIYI	SMM	198.436	173.628	0.875	278	0.119	268.987	188.901	0.702	188.32	328.77	508	725.7	173.6280949	198.4357879	189.48289	209.2040077	M6	2.6	2.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.123	278	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.659865643	sgMsh2	cell line
chr2	121336461	121336461	T	G	ENSMUST00000052029.9	1	ENSMUSG00000033526	missense	S/R	870	Ppip5k1	ENSMUST00000052029.9:c.2608A>C	ENSMUSP00000057632.3:p.Ser870Arg	H-2-Db	9	11	1	RAISELNYM	SAISELNYM	NetMHCpan	138.7	63.8	0.46	142	0.056	375.561	214.339	0.571	146.47	381.66	63.8	138.7	340.1104688	520.7388744	282.2084413	369.4621898	M6	0.157142857	0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.07	142	36	1	0.027777778	2qE5	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.375533293	sgMsh2	cell line
chr2	104645002	104645002	G	T	ENSMUST00000028599.7	1	ENSMUSG00000027176	missense	K/N	94	Cstf3	ENSMUST00000028599.7:c.282G>T	ENSMUSP00000028599.7:p.Lys94Asn	H-2-Db	9	7	5	RCLMNVLHI	RCLMKVLHI	NetMHCpan	378.6	12097.2	31.952	146	0.26	476.602	19084.164	40.042	19821.12	406.73	12097.2	378.6	21213.87473	652.5593249	18347.20865	546.4746241	M6	1.642857143	1.642857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.258	146	68	10	0.147058824	2qE2	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr2	88402653	88402653	CT	C	ENSMUST00000213157.1	5	ENSMUSG00000075127	FS	S/X	94	Olfr1179	ENSMUST00000213157.1:c.280del	ENSMUSP00000151174.1:p.Ser94AlafsTer22	H-2-Kb	8	7	5	ISYTAAWL	ISYTSCMA	NetMHC	9	378.66	42.073	222	0.14	12.197	394.013	32.305	378.66	9	387.4	15	400.6268017	11.60753495	401.5503419	12.78615603	M6	0.528571429	0.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.144	222	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.772525631	sgMsh2	cell line
chr2	91606329	91606329	G	T	ENSMUST00000111338.9	1	ENSMUSG00000040549	missense	Q/H	1591	Ckap5	ENSMUST00000111338.9:c.4773G>T	ENSMUSP00000106970.3:p.Gln1591His	H-2-Kb	8	7	5	ATFMHLRL	ATFMQLRL	NetMHCpan	9.6	49.4	5.146	310	0.119	20.833	103.303	4.959	131.56	16.62	49.4	9.6	99.0238939	28.29697428	107.5820957	25.04609364	M6	0.557142857	0.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.126	310	121	19	0.157024793	2qE1	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.675959927	sgMsh2	cell line
chr2	88006632	88006632	T	G	ENSMUST00000099839.3	NA	ENSMUSG00000075141	missense	M/L	49	Olfr1160	ENSMUST00000099839.3:c.145A>C	ENSMUSP00000097427.3:p.Met49Leu	H-2-Kb	8	4	8	SIYSITLL	SIYSITLM	NetMHC	23.89	82.42	3.45	470	0.038	68.167	260.849	3.827	82.42	23.89	64.5	24.2	480.5515695	119.8781411	439.2785529	112.1346934	M6	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.041	470	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.219955214	sgMsh2	cell line
chr2	91606329	91606329	G	T	ENSMUST00000111338.9	1	ENSMUSG00000040549	missense	Q/H	1591	Ckap5	ENSMUST00000111338.9:c.4773G>T	ENSMUSP00000106970.3:p.Gln1591His	H-2-Kb	8	5	7	LIATFMHL	LIATFMQL	NetMHC	24.58	57.14	2.325	310	0.119	54.236	83.255	1.535	57.14	24.58	66.8	33.7	99.71029474	74.77217263	110.5961477	86.24620612	M6	1.557142857	1.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.126	310	121	19	0.157024793	2qE1	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.675959927	sgMsh2	cell line
chr2	89112332	89112332	A	G	ENSMUST00000217635.1	5	ENSMUSG00000075102	missense	F/S	60	Olfr1221	ENSMUST00000217635.1:c.179T>C	ENSMUSP00000149330.1:p.Phe60Ser	H-2-Kb	8	11	1	SFLVFLSL	FFLVFLSL	SMM	27.399	49.63	1.811	466	0.157	36.332	140.561	3.869	223.08	39.11	800.4	69.8	49.62951144	27.39933359	58.04168341	33.55366776	M6	2.914285714	2.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.15	466	0	0	NA	2qE1	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.804714199	sgMsh2	cell line
chr2	89574963	89574963	TA	T	ENSMUST00000217402.1	5	ENSMUSG00000111456	FS	F/X	254	Olfr1245	ENSMUST00000217402.1:c.762del	ENSMUSP00000150791.1:p.Phe254LeufsTer27	H-2-Kb	8	25	0	VLLFFIQL	NA	SMMPMBEC	31.75	NA	NA	208	0.163	46.747	NA	NA	NA	80.51	NA	59	NA	34.49371732	NA	31.74972734	M6	2.571428571	2.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.156	208	0	0	NA	2qE1	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.836902767	sgMsh2	cell line
chr2	89112332	89112332	A	G	ENSMUST00000217635.1	5	ENSMUSG00000075102	missense	F/S	60	Olfr1221	ENSMUST00000217635.1:c.179T>C	ENSMUSP00000149330.1:p.Phe60Ser	H-2-Kb	8	6	6	GSPMYSFL	GSPMYFFL	NetMHC	84.6	125.97	1.489	466	0.157	108.775	120.491	1.108	125.97	84.6	88.1	100.4	167.0090478	167.3940435	115.0111643	117.1493815	M6	0.571428571	0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.15	466	0	0	NA	2qE1	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.804714199	sgMsh2	cell line
chr2	88423567	88423567	G	T	ENSMUST00000213190.1	5	ENSMUSG00000075125	missense	H/N	153	Olfr1181	ENSMUST00000213190.1:c.457C>A	ENSMUSP00000150939.1:p.His153Asn	H-2-Kb	8	9	3	VANSFPQV	VAHSFPQV	NetMHC	106.43	30.02	0.282	378	0.132	136.536	77.757	0.569	30.02	106.43	52.3	223.2	107.830098	129.9391436	103.2143305	143.1330745	M6	-0.085714286	-0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.136	378	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.72960754	sgMsh2	cell line
chr2	89112330	89112330	A	G	ENSMUST00000217635.1	5	ENSMUSG00000075102	missense	F/L	61	Olfr1221	ENSMUST00000217635.1:c.181T>C	ENSMUSP00000149330.1:p.Phe61Leu	H-2-Kb	8	5	7	GSPMYFLL	GSPMYFFL	NetMHCpan	74.2	88.1	1.187	465	0.101	138.779	120.491	0.868	125.97	112.84	88.1	74.2	167.0090478	251.6170116	115.0111643	164.7175978	M6	1.228571429	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.109	465	0	0	NA	2qE1	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.584758984	sgMsh2	cell line
chr2	111814073	111814073	A	G	ENSMUST00000216114.2	5	ENSMUSG00000093804	missense	Y/H	218	Olfr1303	ENSMUST00000216114.2:c.652T>C	ENSMUSP00000149015.1:p.Tyr218His	H-2-Kb	8	9	3	ISHIFILF	ISYIFILF	NetMHCpan	96.9	30.8	0.318	121	0.372	162.928	19.854	0.122	8.65	141.04	30.8	96.9	21.56453014	253.9451951	18.14429089	184.8161845	M6	2.057142857	2.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.372	121	0	0	NA	2qE3	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr2	89574963	89574963	TA	T	ENSMUST00000217402.1	5	ENSMUSG00000111456	FS	F/X	254	Olfr1245	ENSMUST00000217402.1:c.762del	ENSMUSP00000150791.1:p.Phe254LeufsTer27	H-2-Kb	8	18	0	TTFPLINV	NA	SMM	156.942	NA	NA	208	0.163	192.715	NA	NA	NA	186.94	NA	206.6	NA	156.9422953	NA	198.4906254	M6	1.357142857	1.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.156	208	0	0	NA	2qE1	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.836902767	sgMsh2	cell line
chr2	88070610	88070610	T	C	ENSMUST00000215268.1	5	ENSMUSG00000075137	missense	I/M	257	Olfr1163	ENSMUST00000215268.1:c.771A>G	ENSMUSP00000149399.1:p.Ile257Met	H-2-Kb	8	4	8	ITIFHGTM	ITIFHGTI	NetMHCpan	54.6	90.7	1.661	315	0.152	222.92	357.12	1.602	513.54	221.07	90.7	54.6	363.6972355	224.7708563	350.5419514	239.1883374	M6	0.6	0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.146	315	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.783255153	sgMsh2	cell line
chr2	88339985	88339985	A	G	ENSMUST00000213778.1	5	ENSMUSG00000050023	missense	K/R	140	Olfr1176	ENSMUST00000213778.1:c.419A>G	ENSMUSP00000149943.1:p.Lys140Arg	H-2-Kb	8	8	4	MSQRLCAL	MSQKLCAL	SMM	138.593	251.038	1.811	356	0.174	204.523	445.279	2.177	549.57	222.09	971.5	567.4	251.0383085	138.5925865	340.9887101	186.956255	M6	0.442857143	0.442857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.176	356	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.944197993	sgMsh2	cell line
chr2	119139420	119139420	GT	G	ENSMUST00000094695.11	1	ENSMUSG00000070730	FS	T/X	387	Rmdn3	ENSMUST00000094695.11:c.1159del	ENSMUSP00000092283.5:p.Thr387ArgfsTer46	H-2-Kb	8	37	0	YSQDFQKL	NA	SMM	227.898	NA	NA	171	0.181	263.57	NA	NA	NA	233.55	NA	302.9	NA	227.8977303	NA	293.5891489	M6	-1.228571429	-1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1813	171	46	5	0.108695652	2qE5	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.972631228	sgMsh2	cell line
chr2	121343482	121343482	C	A	ENSMUST00000052029.9	1	ENSMUSG00000033526	missense	G/V	386	Ppip5k1	ENSMUST00000052029.9:c.1157G>T	ENSMUSP00000057632.3:p.Gly386Val	H-2-Kb	8	9	3	TSVTMMEL	TSGTMMEL	NetMHC	281.07	2080.14	7.401	248	0.185	498.949	1674.977	3.357	2080.14	281.07	3652.7	480.6	1269.813676	529.3464441	1116.194813	517.2970479	M6	0.971428571	0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.191	248	17	5	0.294117647	2qE5	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr2	89609883	89609883	G	T	ENSMUST00000111532.3	5	ENSMUSG00000075081	missense	T/N	73	Olfr1247	ENSMUST00000111532.3:c.218C>A	ENSMUSP00000107157.1:p.Thr73Asn	H-2-Kb	8	7	5	AVYSNAIL	AVYSTAIL	NetMHCpan	181	103.3	0.571	605	0.112	222.81	159.389	0.715	111.41	306.87	103.3	181	218.1423563	229.4774419	207.3671696	216.1424152	M6	1.242857143	1.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.107	605	0	0	NA	2qE1	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.574029462	sgMsh2	cell line
chr2	110265593	110265593	T	A	ENSMUST00000046233.8	1	ENSMUSG00000041660	missense	N/I	342	Bbox1	ENSMUST00000046233.8:c.1025A>T	ENSMUSP00000046302.2:p.Asn342Ile	H-2-Kb	8	7	5	ITFDIWRL	ITFDNWRL	NetMHCpan	54.2	79.3	1.463	153	0.144	96.512	87.498	0.907	262.12	458.63	79.3	54.2	90.51905263	105.3755853	84.47729517	87.64759423	M6	0.214285714	0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.14	153	0	0	NA	2qE3	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.751066585	sgMsh2	cell line
chr2	91585795	91585795	A	G	ENSMUST00000111338.9	1	ENSMUSG00000040549	missense	H/R	1022	Ckap5	ENSMUST00000111338.9:c.3065A>G	ENSMUSP00000106970.3:p.His1022Arg	H-2-Kb	8	9	3	VPRLYSCL	VPHLYSCL	SMM	101.33	119.327	1.178	209	0.153	318.244	249.374	0.784	379.42	517.16	776.4	1216.5	119.3273511	101.3304567	114.219433	119.3273511	M6	0.271428571	0.328571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.157	209	122	22	0.180327869	2qE1	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.842267528	sgMsh2	cell line
chr2	89112330	89112330	A	G	ENSMUST00000217635.1	5	ENSMUSG00000075102	missense	F/L	61	Olfr1221	ENSMUST00000217635.1:c.181T>C	ENSMUSP00000149330.1:p.Phe61Leu	H-2-Kb	8	10	2	FLLVFLSL	FFLVFLSL	SMMPMBEC	129.342	58.042	0.449	465	0.101	335.362	140.561	0.419	223.08	524.93	800.4	653.9	49.62951144	145.794117	58.04168341	129.3421274	M6	3.057142857	3.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.109	465	0	0	NA	2qE1	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.584758984	sgMsh2	cell line
chr2	88070610	88070610	T	C	ENSMUST00000215268.1	5	ENSMUSG00000075137	missense	I/M	257	Olfr1163	ENSMUST00000215268.1:c.771A>G	ENSMUSP00000149399.1:p.Ile257Met	H-2-Kb	8	5	7	TIFHGTML	TIFHGTIL	SMMPMBEC	234.823	688.24	2.931	315	0.152	278.821	751.228	2.694	1955.18	540.11	524	244.5	814.2166892	313.1410475	688.2401428	234.8226582	M6	1.242857143	1.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.146	315	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.783255153	sgMsh2	cell line
chr2	89112330	89112330	A	G	ENSMUST00000217635.1	5	ENSMUSG00000075102	missense	F/L	61	Olfr1221	ENSMUST00000217635.1:c.181T>C	ENSMUSP00000149330.1:p.Phe61Leu	H-2-Kb	8	8	4	MYFLLVFL	MYFFLVFL	SMM	163.584	183.544	1.122	465	0.101	438.111	328.176	0.749	702.49	706.5	452.3	748.7	183.5439188	163.5836898	204.0515979	169.7227266	M6	2.842857143	2.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.109	465	0	0	NA	2qE1	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.584758984	sgMsh2	cell line
chr2	89574963	89574963	TA	T	ENSMUST00000217402.1	5	ENSMUSG00000111456	FS	F/X	254	Olfr1245	ENSMUST00000217402.1:c.762del	ENSMUSP00000150791.1:p.Phe254LeufsTer27	H-2-Kb	8	27	0	LFFIQLSL	NA	SMM	298.36	NA	NA	208	0.163	416.803	NA	NA	NA	715.85	NA	406.3	NA	298.3595888	NA	427.3069928	M6	1.914285714	1.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.156	208	0	0	NA	2qE1	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.836902767	sgMsh2	cell line
chr2	111449611	111449611	T	C	ENSMUST00000075390.1	NA	ENSMUSG00000095586	missense	M/T	157	Olfr1287	ENSMUST00000075390.1:c.470T>C	ENSMUSP00000074850.1:p.Met157Thr	H-2-Kb	8	5	7	IGFIHATS	IGFIHAMS	SMM	100.401	88.459	0.881	761	0.252	214.062	182.421	0.852	651.86	981.33	235.5	283	88.45858744	100.4014535	129.3421274	145.1242539	M6	0.571428571	1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.252	761	0	0	NA	2qE3	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr2	87833436	87833436	A	G	ENSMUST00000215230.1	5	ENSMUSG00000061875	missense	I/M	132	Olfr1148	ENSMUST00000215230.1:c.396A>G	ENSMUSP00000149438.1:p.Ile132Met	H-2-Kb	9	3	9	MSYDRYVAM	MSYDRYVAI	NetMHCpan	7.7	9.3	1.208	414	0.164	12.844	21.056	1.639	15.55	10.12	9.3	7.7	32.36756285	17.14391481	26.56134116	15.56861575	M6	-0.385714286	-0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.167	414	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.895915141	sgMsh2	cell line
chr2	88929956	88929956	C	T	ENSMUST00000215205.1	5	ENSMUSG00000075112	missense	D/N	120	Olfr1211	ENSMUST00000215205.1:c.358G>A	ENSMUSP00000150571.1:p.Asp120Asn	H-2-Kb	9	8	4	MAYNRYVAI	MAYDRYVAI	NetMHCpan	10.6	14.4	1.358	433	0.152	22.873	30.259	1.323	27.08	15.46	14.4	10.6	39.27443988	37.76678362	33.43874735	30.28656361	M6	-0.014285714	-0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.155	433	0	0	NA	2qE1	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.831538005	sgMsh2	cell line
chr2	111537918	111537918	C	G	ENSMUST00000208675.2	2	ENSMUSG00000109547	missense	V/L	124	Olfr1294	ENSMUST00000208675.2:c.370G>C	ENSMUSP00000146438.1:p.Val124Leu	H-2-Kb	9	5	7	MAYDRYLAI	MAYDRYVAI	NetMHCpan	14.8	14.4	0.973	377	0.247	34.154	30.259	0.886	27.08	30.53	14.4	14.8	39.27443988	39.82080176	33.43874735	37.77896015	M6	-0.071428571	-0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.239	377	0	0	NA	2qE3	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr2	89112332	89112332	A	G	ENSMUST00000217635.1	5	ENSMUSG00000075102	missense	F/S	60	Olfr1221	ENSMUST00000217635.1:c.179T>C	ENSMUSP00000149330.1:p.Phe60Ser	H-2-Kb	9	11	1	SFLVFLSLL	FFLVFLSLL	NetMHC	33.6	120.88	3.598	466	0.157	86.997	149.201	1.715	120.88	33.6	1133	105.9	104.9808295	68.09418088	177.521108	120.5729815	M6	3.057142857	3.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.15	466	0	0	NA	2qE1	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.804714199	sgMsh2	cell line
chr2	111537918	111537918	C	G	ENSMUST00000208675.2	2	ENSMUSG00000109547	missense	V/L	124	Olfr1294	ENSMUST00000208675.2:c.370G>C	ENSMUSP00000146438.1:p.Val124Leu	H-2-Kb	9	3	9	VAMAYDRYL	VAMAYDRYV	NetMHC	34.74	105.62	3.04	377	0.247	119.516	324.279	2.713	105.62	34.74	254	63.6	394.5572246	175.4324789	422.9119919	188.9078477	M6	-0.442857143	0.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.239	377	0	0	NA	2qE3	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr2	89112332	89112332	A	G	ENSMUST00000217635.1	5	ENSMUSG00000075102	missense	F/S	60	Olfr1221	ENSMUST00000217635.1:c.179T>C	ENSMUSP00000149330.1:p.Phe60Ser	H-2-Kb	9	10	2	YSFLVFLSL	YFFLVFLSL	NetMHCpan	60.7	1055.3	17.386	466	0.157	104.309	382.366	3.666	470.12	63.37	1055.3	60.7	268.6024688	145.2479461	294.6117067	146.6391721	M6	2.914285714	2.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.15	466	0	0	NA	2qE1	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.804714199	sgMsh2	cell line
chr2	89575481	89575481	C	T	ENSMUST00000217402.1	5	ENSMUSG00000111456	missense	D/N	82	Olfr1245	ENSMUST00000217402.1:c.244G>A	ENSMUSP00000150791.1:p.Asp82Asn	H-2-Kb	9	4	8	ISPKLIVNL	ISPKLIVDL	NetMHCpan	63.9	452.5	7.081	345	0.13	298.903	819.774	2.743	764.06	82.28	452.5	63.9	1267.972983	602.7122243	875.4876014	515.5253194	M6	1.042857143	1.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.133	345	0	0	NA	2qE1	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.713513256	sgMsh2	cell line
chr2	110265593	110265593	T	A	ENSMUST00000046233.8	1	ENSMUSG00000041660	missense	N/I	342	Bbox1	ENSMUST00000046233.8:c.1025A>T	ENSMUSP00000046302.2:p.Asn342Ile	H-2-Kb	9	7	5	ITFDIWRLL	ITFDNWRLL	NetMHCpan	45.4	49.9	1.099	153	0.144	134.553	91.818	0.682	47.54	89.53	49.9	45.4	138.3916859	195.4834522	133.7365144	179.5767056	M6	0.857142857	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.14	153	0	0	NA	2qE3	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.751066585	sgMsh2	cell line
chr2	91606329	91606329	G	T	ENSMUST00000111338.9	1	ENSMUSG00000040549	missense	Q/H	1591	Ckap5	ENSMUST00000111338.9:c.4773G>T	ENSMUSP00000106970.3:p.Gln1591His	H-2-Kb	9	7	5	ATFMHLRLI	ATFMQLRLI	NetMHCpan	83	452.8	5.455	310	0.119	187.728	640.476	3.412	370.21	103.03	452.8	83	828.1518951	283.863792	897.9455448	272.4269072	M6	1.3	1.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.126	310	121	19	0.157024793	2qE1	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.675959927	sgMsh2	cell line
chr2	89574963	89574963	TA	T	ENSMUST00000217402.1	5	ENSMUSG00000111456	FS	F/X	254	Olfr1245	ENSMUST00000217402.1:c.762del	ENSMUSP00000150791.1:p.Phe254LeufsTer27	H-2-Kb	9	24	0	NVLLFFIQL	NA	NetMHC	106.64	NA	NA	208	0.163	159.654	NA	NA	NA	106.64	NA	185	NA	159.628341	NA	159.6798074	M6	2.571428571	2.628571429	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;Vardict	3	0.156	208	0	0	NA	2qE1	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.836902767	sgMsh2	cell line
chr2	88402653	88402653	CT	C	ENSMUST00000213157.1	5	ENSMUSG00000075127	FS	S/X	94	Olfr1179	ENSMUST00000213157.1:c.280del	ENSMUSP00000151174.1:p.Ser94AlafsTer22	H-2-Kb	9	14	0	LSFLPCISL	NA	NetMHC	146.85	NA	NA	222	0.14	216.149	NA	NA	NA	146.85	NA	174.6	NA	257.6973782	NA	291.9106903	M6	2.142857143	2.142857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.144	222	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.772525631	sgMsh2	cell line
chr2	91284247	91284247	A	G	ENSMUST00000102594.10	1	ENSMUSG00000040591	missense	F/L	147	1110051M20Rik	ENSMUST00000102594.10:c.439T>C	ENSMUSP00000099654.4:p.Phe147Leu	H-2-Kb	9	8	4	QIQLYYSEF	QIQFYYSEF	SMM	177.873	191.034	1.074	248	0.173	233.567	248.13	1.062	224.46	181.21	352.1	442.3	191.0337056	177.8729877	271.8003427	285.9235978	M6	-0.542857143	-0.3	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.174	248	53	6	0.113207547	2qE1	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.93346847	sgMsh2	cell line
chr2	119139420	119139420	GT	G	ENSMUST00000094695.11	1	ENSMUSG00000070730	FS	T/X	387	Rmdn3	ENSMUST00000094695.11:c.1159del	ENSMUSP00000092283.5:p.Thr387ArgfsTer46	H-2-Kb	9	45	0	DGYIFLSAI	NA	NetMHC	187.49	NA	NA	171	0.181	309.473	NA	NA	NA	187.49	NA	212.4	NA	406.5462879	NA	510.7989549	M6	2.185714286	2.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1813	171	46	5	0.108695652	2qE5	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.972631228	sgMsh2	cell line
chr2	121348531	121348531	C	T	ENSMUST00000052029.9	1	ENSMUSG00000033526	missense	S/N	238	Ppip5k1	ENSMUST00000052029.9:c.713G>A	ENSMUSP00000057632.3:p.Ser238Asn	H-2-Kb	9	4	8	SVYSPESNV	SVYSPESSV	SMM	190.594	221.876	1.164	199	0.181	308.084	401.872	1.304	330.32	195.2	875.3	523.6	221.8758325	190.5943402	473.4237051	420.9688878	M6	-1.042857143	-0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.184	199	21	9	0.428571429	2qE5	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.987116084	sgMsh2	cell line
chr2	88070610	88070610	T	C	ENSMUST00000215268.1	5	ENSMUSG00000075137	missense	I/M	257	Olfr1163	ENSMUST00000215268.1:c.771A>G	ENSMUSP00000149399.1:p.Ile257Met	H-2-Kb	9	4	8	ITIFHGTML	ITIFHGTIL	NetMHCpan	99.3	211.2	2.127	315	0.152	218.84	396.307	1.811	552.76	196.55	211.2	99.3	448.8590645	348.4255546	343.7557727	241.1293081	M6	1.242857143	1.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.146	315	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.783255153	sgMsh2	cell line
chr2	91284247	91284247	A	G	ENSMUST00000102594.10	1	ENSMUSG00000040591	missense	F/L	147	1110051M20Rik	ENSMUST00000102594.10:c.439T>C	ENSMUSP00000099654.4:p.Phe147Leu	H-2-Kb	9	9	3	IQLYYSEFL	IQFYYSEFL	NetMHCpan	192.4	29.6	0.154	248	0.173	382.31	125.453	0.328	51.33	204.72	29.6	192.4	199.5767748	559.8993973	219.4067579	608.4851727	M6	0.5	0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.174	248	53	6	0.113207547	2qE1	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.93346847	sgMsh2	cell line
chr2	89112332	89112332	A	G	ENSMUST00000217635.1	5	ENSMUSG00000075102	missense	F/S	60	Olfr1221	ENSMUST00000217635.1:c.179T>C	ENSMUSP00000149330.1:p.Phe60Ser	H-2-Kb	9	8	4	PMYSFLVFL	PMYFFLVFL	SMM	29.384	32.219	1.096	466	0.157	135.439	202.29	1.494	360.5	217.39	910.3	281.5	32.21884741	29.38393807	44.08085403	53.4872168	M6	2.185714286	2.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.15	466	0	0	NA	2qE1	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.804714199	sgMsh2	cell line
chr2	88896799	88896799	T	C	ENSMUST00000214297.1	5	ENSMUSG00000075114	missense	K/R	266	Olfr1208	ENSMUST00000214297.1:c.797A>G	ENSMUSP00000149695.1:p.Lys266Arg	H-2-Kb	9	11	1	RVFALFYTM	KVFALFYTM	NetMHCpan	58.6	48.3	0.824	494	0.117	255.728	205.981	0.805	183.87	220.98	48.3	58.6	228.091972	290.4758291	294.6117067	366.6485738	M6	1.585714286	1.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.125	494	0	0	NA	2qE1	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.670595166	sgMsh2	cell line
chr2	89112330	89112330	A	G	ENSMUST00000217635.1	5	ENSMUSG00000075102	missense	F/L	61	Olfr1221	ENSMUST00000217635.1:c.181T>C	ENSMUSP00000149330.1:p.Phe61Leu	H-2-Kb	9	10	2	FLLVFLSLL	FFLVFLSLL	NetMHC	229.34	120.88	0.527	465	0.101	325.814	149.201	0.458	120.88	229.34	1133	1179.6	104.9808295	272.9669078	177.521108	378.6604965	M6	3.057142857	3.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.109	465	0	0	NA	2qE1	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.584758984	sgMsh2	cell line
chr2	89112330	89112330	A	G	ENSMUST00000217635.1	5	ENSMUSG00000075102	missense	F/L	61	Olfr1221	ENSMUST00000217635.1:c.181T>C	ENSMUSP00000149330.1:p.Phe61Leu	H-2-Kb	9	5	7	GSPMYFLLV	GSPMYFFLV	NetMHCpan	143	135.5	0.948	465	0.101	298.693	265.97	0.89	211.97	244	135.5	143	319.9705442	357.3633412	346.9365057	353.3865369	M6	1.942857143	1.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.109	465	0	0	NA	2qE1	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.584758984	sgMsh2	cell line
chr2	91606329	91606329	G	T	ENSMUST00000111338.9	1	ENSMUSG00000040549	missense	Q/H	1591	Ckap5	ENSMUST00000111338.9:c.4773G>T	ENSMUSP00000106970.3:p.Gln1591His	H-2-Kb	9	6	6	IATFMHLRL	IATFMQLRL	NetMHCpan	115.5	368.7	3.192	310	0.119	262.767	458.862	1.746	535.38	267.16	368.7	115.5	460.3731641	298.6138865	457.3513865	258.3747087	M6	0.557142857	1.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.126	310	121	19	0.157024793	2qE1	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.675959927	sgMsh2	cell line
chr2	91284247	91284247	A	G	ENSMUST00000102594.10	1	ENSMUSG00000040591	missense	F/L	147	1110051M20Rik	ENSMUST00000102594.10:c.439T>C	ENSMUSP00000099654.4:p.Phe147Leu	H-2-Kb	9	3	9	FLFAFQIQL	FLFAFQIQF	NetMHCpan	235.9	1129.7	4.789	248	0.173	317.333	742.822	2.341	735.56	268.86	1129.7	235.9	750.0841699	444.7438999	632.7760017	365.8053055	M6	1.242857143	2.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.174	248	53	6	0.113207547	2qE1	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.93346847	sgMsh2	cell line
chr2	122123858	122123858	C	T	ENSMUST00000028665.4	1	ENSMUSG00000027233	missense	G/S	411	Patl2	ENSMUST00000028665.4:c.1231G>A	ENSMUSP00000028665.4:p.Gly411Ser	H-2-Kb	9	11	1	SLHMLFKPL	GLHMLFKPL	NetMHCpan	116.1	1434.7	12.357	159	0.208	452.867	1779.655	3.93	3440.74	281.64	1434.7	116.1	2009.601749	709.7575157	1549.708446	624.0939895	M6	0.514285714	0.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.198	159	0	0	NA	2qE5	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr2	91585795	91585795	A	G	ENSMUST00000111338.9	1	ENSMUSG00000040549	missense	H/R	1022	Ckap5	ENSMUST00000111338.9:c.3065A>G	ENSMUSP00000106970.3:p.His1022Arg	H-2-Kb	9	8	4	CVPRLYSCL	CVPHLYSCL	NetMHC	292.36	535.28	1.831	209	0.153	399.682	540.048	1.351	535.28	292.36	573.1	335.8	413.1521337	463.5643185	544.816184	638.631006	M6	0.271428571	0.328571429	TRUE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.157	209	122	22	0.180327869	2qE1	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.842267528	sgMsh2	cell line
chr2	117177703	117177703	A	G	ENSMUST00000028829.12	1	ENSMUSG00000027351	missense	I/M	363	Spred1	ENSMUST00000028829.12:c.1089A>G	ENSMUSP00000028829.6:p.Ile363Met	H-2-Kb	9	10	2	CMYQVSCML	CIYQVSCML	SMM	228.618	511.811	2.239	207	0.261	331.205	563.356	1.701	483.81	295.31	614.9	367.1	511.811453	228.6177783	851.6281337	411.386466	M6	0.971428571	0.971428571	TRUE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.254	207	170	43	0.252941176	2qE5	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr2	88070610	88070610	T	C	ENSMUST00000215268.1	5	ENSMUSG00000075137	missense	I/M	257	Olfr1163	ENSMUST00000215268.1:c.771A>G	ENSMUSP00000149399.1:p.Ile257Met	H-2-Kb	9	3	9	AITIFHGTM	AITIFHGTI	NetMHCpan	325.5	543	1.668	315	0.152	486.627	930.513	1.912	796.27	349.16	543	325.5	1330.791444	704.8715793	1064.755765	624.0939895	M6	0.6	1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.146	315	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.783255153	sgMsh2	cell line
chr2	93704611	93704611	A	G	ENSMUST00000028623.12	1	ENSMUSG00000027198	missense	Y/H	603	Ext2	ENSMUST00000028623.12:c.1807T>C	ENSMUSP00000028623.6:p.Tyr603His	H-2-Kb	9	7	5	FYHKHFNYL	FYHKYFNYL	SMM	156.354	125.346	0.802	182	0.132	281.658	187.186	0.665	225.35	376.14	230.6	511.4	125.3458616	156.3543614	149.021867	187.1759302	M6	-1.214285714	-1.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.136	182	234	24	0.102564103	2qE1	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.72960754	sgMsh2	cell line
chr2	90149482	90149482	A	G	ENSMUST00000215578.1	5	ENSMUSG00000075065	missense	Y/H	175	Olfr1270	ENSMUST00000215578.1:c.523T>C	ENSMUSP00000151124.1:p.Tyr175His	H-2-Kb	9	7	5	VIDHHFCDL	VIDHYFCDL	SMMPMBEC	216.396	172.286	0.796	418	0.146	328.55	236.774	0.721	255.22	384.76	345.2	850.8	218.3282833	272.3391013	172.2860048	216.3963843	M6	-0.614285714	0.585714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.152	418	0	0	NA	2qE1	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.815443721	sgMsh2	cell line
chr2	90139121	90139121	A	C	ENSMUST00000215153.2	2	ENSMUSG00000075066	missense	V/G	6	Olfr32	ENSMUST00000215153.2:c.17T>G	ENSMUSP00000150246.1:p.Val6Gly	H-2-Kb	9	1	6	MAFVNGTEL	MAFVNVTEL	NetMHCpan	300.4	116.7	0.388	383	0.125	451.798	244.575	0.541	170.65	408.02	116.7	300.4	318.5004131	495.5756965	366.6485738	566.5653364	M6	0.385714286	0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.125	383	0	0	NA	2qE1	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.670595166	sgMsh2	cell line
chr2	88392008	88392008	T	A	ENSMUST00000214040.2	5	ENSMUSG00000056995	missense	F/I	254	Olfr1178	ENSMUST00000214040.2:c.760T>A	ENSMUSP00000150036.1:p.Phe254Ile	H-2-Kb	9	11	1	IIYIRPATT	FIYIRPATT	SMMPMBEC	220.419	494.595	2.244	278	0.119	362.375	1243.044	3.43	1918.4	442.19	1950.8	534.8	567.6883738	282.5595563	494.595317	220.4194935	M6	-0.357142857	1.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.123	278	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.659865643	sgMsh2	cell line
chr2	88402653	88402653	CT	C	ENSMUST00000213157.1	5	ENSMUSG00000075127	FS	S/X	94	Olfr1179	ENSMUST00000213157.1:c.280del	ENSMUSP00000151174.1:p.Ser94AlafsTer22	H-2-Kb	9	12	0	AWLSFLPCI	NA	SMM	219.842	NA	NA	222	0.14	459.983	NA	NA	NA	571.32	NA	546.5	NA	219.8416627	NA	373.4650797	M6	2.142857143	2.142857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.144	222	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.772525631	sgMsh2	cell line
chr2	88340206	88340206	A	G	ENSMUST00000213778.1	5	ENSMUSG00000050023	missense	I/V	214	Olfr1176	ENSMUST00000213778.1:c.640A>G	ENSMUSP00000149943.1:p.Ile214Val	H-2-Kb	9	11	1	VIIVSYVVI	IIIVSYVVI	SMMPMBEC	241.685	320.074	1.324	295	0.153	368.298	440.96	1.197	841.42	664.37	479.1	463	402.8190492	273.5961615	320.0737072	241.6851686	M6	2.785714286	2.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.158	295	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.847632289	sgMsh2	cell line
chr2	93704611	93704611	A	G	ENSMUST00000028623.12	1	ENSMUSG00000027198	missense	Y/H	603	Ext2	ENSMUST00000028623.12:c.1807T>C	ENSMUSP00000028623.6:p.Tyr603His	H-2-Kb	10	6	6	AFYHKHFNYL	AFYHKYFNYL	NetMHC	113.13	52.58	0.465	182	0.132	444.609	403.633	0.908	52.58	113.13	93	199.2	987.0291979	987.0291979	714.2660368	690.0173327	M6	-1.214285714	-0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.136	182	234	24	0.102564103	2qE1	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.72960754	sgMsh2	cell line
chr2	158768178	158768178	C	T	ENSMUST00000029183.2	1	ENSMUSG00000027654	missense	P/L	22	Fam83d	ENSMUST00000029183.2:c.65C>T	ENSMUSP00000029183.2:p.Pro22Leu	H-2-Db	9	8	4	CGPLNPTEL	CGPPNPTEL	NetMHC	65.56	425.32	6.487	53	0.264	216.905	644.766	2.973	425.32	65.56	306.4	93.7	864.2114181	340.1104688	1154.968129	410.7428385	M6	-0.471428571	-0.214285714	TRUE	FALSE	FALSE	1	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.278	53	3	1	0.333333333	2qH1	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr2	180714861	180714861	A	G	ENSMUST00000078687.5	1	ENSMUSG00000027573	missense	N/S	97	Gid8	ENSMUST00000078687.5:c.290A>G	ENSMUSP00000077753.5:p.Asn97Ser	H-2-Kb	8	11	1	SRYLYFHL	NRYLYFHL	NetMHC	8.14	142.06	17.452	106	0.038	15.146	118.423	7.819	142.06	8.14	235.5	34.2	94.78508415	14.91900983	87.24489012	15.37234066	M6	0.014285714	0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.05	106	142	5	0.035211268	2qH4	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.268238066	sgMsh2	cell line
chr2	130137453	130137453	G	A	ENSMUST00000028888.4	1	ENSMUSG00000027403	missense	V/M	168	Tgm6	ENSMUST00000028888.4:c.502G>A	ENSMUSP00000028888.4:p.Val168Met	H-2-Kb	8	4	8	SGVIFRGM	SGVIFRGV	NetMHC	54.28	72.19	1.33	129	0.163	150.598	161.821	1.075	72.19	54.28	105.5	57	218.1423563	244.7597495	225.8083514	244.1968177	M6	1.157142857	1.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.176	129	0	0	NA	2qF1	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.944197993	sgMsh2	cell line
chr2	132240580	132240580	A	G	ENSMUST00000110164.7	2	ENSMUSG00000027341	missense	F/S	90	Tmem230	ENSMUST00000110164.7:c.269T>C	ENSMUSP00000105793.1:p.Phe90Ser	H-2-Kb	8	11	1	SLPGFYHL	FLPGFYHL	NetMHCpan	98.2	522.1	5.317	177	0.266	164.475	459.527	2.794	694.44	114.79	522.1	98.2	387.9180607	214.1608096	396.9538331	229.4774419	M6	0.557142857	0.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.273	177	38	4	0.105263158	2qF2	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr2	164820502	164820502	C	T	ENSMUST00000052107.4	1	ENSMUSG00000045822	missense	L/F	301	Zswim3	ENSMUST00000052107.4:c.901C>T	ENSMUSP00000050970.3:p.Leu301Phe	H-2-Kb	8	7	5	SARTFLSI	SARTLLSI	NetMHCpan	150.2	2729.6	18.173	130	0.254	269.723	3724.819	13.81	3719.37	185.66	2729.6	150.2	3730.267702	353.7854762	4214.44121	395.1299959	M6	0.985714286	0.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.244	130	37	6	0.162162162	2qH3	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr2	164025647	164025647	A	G	ENSMUST00000067715.4	1	ENSMUSG00000054582	missense	Y/C	56	Pabpc1l	ENSMUST00000067715.4:c.167A>G	ENSMUSP00000096701.3:p.Tyr56Cys	H-2-Kb	8	5	7	RSLGYACI	RSLGYAYI	SMMPMBEC	239.74	86.445	0.361	90	0.178	315.363	69.973	0.222	31.14	336.46	53.5	359.4	96.54727043	294.2659418	86.44502416	239.7397234	M6	1.442857143	1.442857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.185	90	0	0	NA	2qH3	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.992480845	sgMsh2	cell line
chr2	146449255	146449255	A	G	ENSMUST00000109986.8	5	ENSMUSG00000037110	missense	F/L	254	Ralgapa2	ENSMUST00000109986.8:c.760T>C	ENSMUSP00000105613.2:p.Phe254Leu	H-2-Kb	8	10	2	LLPSFTKL	LFPSFTKL	NetMHCpan	200.2	284.2	1.42	93	0.204	480.285	228.162	0.475	170.26	450.37	284.2	200.2	227.3735801	667.9439184	228.9496585	510.1994663	M6	0.485714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.233	93	216	62	0.287037037	2qG1	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr2	178420663	178420663	A	G	ENSMUST00000094251.10	1	ENSMUSG00000070476	missense	E/G	140	Fam217b	ENSMUST00000094251.10:c.419A>G	ENSMUSP00000091805.4:p.Glu140Gly	H-2-Kb	9	4	8	VSFSLHPGL	VSFSLHPEL	NetMHC	7.47	15.63	2.092	125	0.2	22.824	29.199	1.279	15.63	7.47	12.7	8.4	42.76711949	37.24860392	53.73410257	48.44511598	M6	0.628571429	0.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.204	125	0	0	NA	2qH4	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr2	132240580	132240580	A	G	ENSMUST00000110164.7	2	ENSMUSG00000027341	missense	F/S	90	Tmem230	ENSMUST00000110164.7:c.269T>C	ENSMUSP00000105793.1:p.Phe90Ser	H-2-Kb	9	10	2	VSLPGFYHL	VFLPGFYHL	NetMHC	22.77	187.13	8.218	177	0.266	93.901	246.108	2.621	187.13	22.77	200.4	30	291.8166046	157.8010905	341.3893746	169.9221522	M6	0.557142857	0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.273	177	38	4	0.105263158	2qF2	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr2	180714861	180714861	A	G	ENSMUST00000078687.5	1	ENSMUSG00000027573	missense	N/S	97	Gid8	ENSMUST00000078687.5:c.290A>G	ENSMUSP00000077753.5:p.Asn97Ser	H-2-Kb	9	10	2	TSRYLYFHL	TNRYLYFHL	NetMHC	31.73	61.26	1.931	106	0.038	64.842	81.222	1.253	61.26	31.73	45.4	34.6	101.1835704	95.08455975	115.9444594	104.2917608	M6	0.014285714	0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.05	106	142	5	0.035211268	2qH4	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.268238066	sgMsh2	cell line
chr2	154009883	154009883	A	C	ENSMUST00000048103.8	1	ENSMUSG00000042459	missense	S/R	80	Bpifa2	ENSMUST00000048103.8:c.238A>C	ENSMUSP00000046080.2:p.Ser80Arg	H-2-Kb	9	7	5	GNLKRFTSL	GNLKSFTSL	NetMHCpan	89.5	315.6	3.526	177	0.045	143.67	567.398	3.949	632.69	145.68	315.6	89.5	584.9382211	169.8673846	549.8573061	141.6609011	M6	0.071428571	0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.056	177	0	0	NA	2qH1	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.300426634	sgMsh2	cell line
chr2	155632414	155632414	G	A	ENSMUST00000092995.5	5	ENSMUSG00000074652	missense	R/H	1683	Myh7b	ENSMUST00000092995.5:c.5048G>A	ENSMUSP00000090672.5:p.Arg1683His	H-2-Kb	9	7	5	QALEHRAAL	QALERRAAL	NetMHC	150.12	211.77	1.411	52	0.135	306.799	286.735	0.935	211.77	150.12	1066.6	619.8	260.6813732	269.8422814	312.7879401	343.7557727	M6	-1.27E-16	-1.27E-16	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.156	52	0	0	NA	2qH1	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.836902767	sgMsh2	cell line
chr2	126459694	126459694	A	G	ENSMUST00000040128.11	5	ENSMUSG00000060131	missense	I/T	82	Atp8b4	ENSMUST00000040128.11:c.245T>C	ENSMUSP00000046444.5:p.Ile82Thr	H-2-Kb	9	6	6	TWFTTTVPL	TWFTTIVPL	SMM	134.62	133.386	0.991	172	0.279	173.938	143.61	0.826	148.82	157.22	138.4	194.4	133.3859235	134.6201283	175.4890407	190.6557905	M6	1.014285714	1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.269	172	0	0	NA	2qF1	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr2	126459694	126459694	A	G	ENSMUST00000040128.11	5	ENSMUSG00000060131	missense	I/T	82	Atp8b4	ENSMUST00000040128.11:c.245T>C	ENSMUSP00000046444.5:p.Ile82Thr	H-2-Kb	9	3	9	SSLTWFTTT	SSLTWFTTI	NetMHC	177.03	22.12	0.125	172	0.279	294.724	95.436	0.324	22.12	177.03	21.6	222.8	186.2558834	433.6206938	168.7524163	366.6485738	M6	0.414285714	0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.269	172	0	0	NA	2qF1	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr2	158120220	158120220	T	C	ENSMUST00000103122.9	1	ENSMUSG00000037820	missense	I/V	560	Tgm2	ENSMUST00000103122.9:c.1678A>G	ENSMUSP00000099411.3:p.Ile560Val	H-2-Kb	9	8	4	SNLVKVRGL	SNLIKVRGL	NetMHC	221.73	256.46	1.157	64	0.25	313.145	361.082	1.153	256.46	221.73	250.6	241.6	465.7040341	384.6892055	496.8782653	504.9518876	M6	1.028571429	1.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.281	64	299	16	0.053511706	2qH1	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr2	146460717	146460717	T	C	ENSMUST00000109986.8	5	ENSMUSG00000037110	missense	I/V	109	Ralgapa2	ENSMUST00000109986.8:c.325A>G	ENSMUSP00000105613.2:p.Ile109Val	H-2-Kb	9	3	9	FFRWHYQSV	FFRWHYQSI	SMM	325.17	359.013	1.104	153	0.176	353.047	397.168	1.125	411.29	335.2	1082	1393.4	359.0128555	325.1696473	383.0451784	370.8941642	M6	-1.428571429	-1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.166	153	80	12	0.15	2qG1	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.89055038	sgMsh2	cell line
chr2	127804943	127804943	A	G	ENSMUST00000028858.7	1	ENSMUSG00000027379	missense	F/L	806	Bub1	ENSMUST00000028858.7:c.2416T>C	ENSMUSP00000028858.7:p.Phe806Leu	H-2-Kb	9	7	5	NSWELYIGM	NSWEFYIGM	NetMHCpan	313.5	33.5	0.107	118	0.28	385.433	70.587	0.183	26.27	375.4	33.5	313.5	107.67379	395.4667729	126.5464598	412.3348098	M6	0.585714286	0.585714286	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.271	118	29	6	0.206896552	2qF1	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr2	157169951	157169951	T	A	ENSMUST00000029170.7	1	ENSMUSG00000027641	missense	I/F	695	Rbl1	ENSMUST00000029170.7:c.2083A>T	ENSMUSP00000029170.7:p.Ile695Phe	H-2-Kb	9	9	3	LSFSPGQAL	LSISPGQAL	NetMHC	401.58	1818.42	4.528	142	0.275	492.319	1877.978	3.815	1818.42	401.58	2647.2	466.9	1445.805924	517.7379503	1937.536979	721.5227015	M6	0.3	0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.268	142	45	16	0.355555556	2qH1	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr3	15543244	15543244	G	A	ENSMUST00000091319.6	1	ENSMUSG00000095028	missense	S/F	147	Sirpb1b	ENSMUST00000091319.6:c.440C>T	ENSMUSP00000088869.4:p.Ser147Phe	H-2-Kb	9	6	6	VLAKPFSPM	VLAKPSSPM	NetMHCpan	157.9	1906.4	12.073	237	0.034	462.819	2055.297	4.441	2662.62	463.14	1906.4	157.9	1318.590675	462.4981501	2204.194935	622.6586131	M6	-0.2	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.037	237	0	0	NA	3qA1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.198496169	sgMsh2	cell line
chr2	160753658	160753658	T	C	ENSMUST00000103115.7	1	ENSMUSG00000016933	missense	Y/H	509	Plcg1	ENSMUST00000103115.7:c.1525T>C	ENSMUSP00000099404.1:p.Tyr509His	H-2-Kb	9	6	6	EWYPHHFVL	EWYPHYFVL	SMM	204.696	58.494	0.286	77	0.234	326.923	129.606	0.396	278.91	720.61	181.9	407.1	58.49382211	204.6963035	77.31255038	246.7459312	M6	0.214285714	0.214285714	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.253	77	77	13	0.168831169	2qH2	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr3	38483027	38483027	T	C	ENSMUST00000120875.7	1	ENSMUSG00000044864	missense	N/S	59	Ankrd50	ENSMUST00000120875.7:c.176A>G	ENSMUSP00000113349.1:p.Asn59Ser	H-2-Db	9	8	4	NAGSNASAI	NAGNNASAI	NetMHC	88.49	219.73	2.483	102	0.206	174.461	235.624	1.351	219.73	88.49	839.4	508.8	212.1387473	162.0391663	251.518538	186.8830873	M6	0.371428571	0.371428571	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.218	102	194	35	0.180412371	3qB	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr3	59319877	59319877	CT	C	ENSMUST00000039419.11	5	ENSMUSG00000036334	FS	K/X	2125	Igsf10	ENSMUST00000039419.11:c.6374del	ENSMUSP00000037246.6:p.Lys2125ArgfsTer50	H-2-Db	9	21	0	RSLGNPSQM	NA	SMM	101.069	NA	NA	194	0.211	166.796	NA	NA	NA	272.27	NA	231.6	NA	101.0694727	NA	101.992914	M6	-0.585714286	-0.585714286	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;Vardict	3	0.211	194	0	0	NA	3qD	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr3	45381123	45381123	A	G	ENSMUST00000166126.6	1	ENSMUSG00000049100	missense	N/S	624	Pcdh10	ENSMUST00000166126.6:c.1871A>G	ENSMUSP00000131073.1:p.Asn624Ser	H-2-Db	9	5	7	YSIVRGSEM	YSIVRGNEM	NetMHCpan	330.2	270.2	0.818	51	0.137	467.622	585.178	1.251	571.09	507.07	270.2	330.2	599.2664992	428.173712	775.4789257	599.1975101	M6	0.2	0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.149	51	0	0	NA	3qB	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.799349437	sgMsh2	cell line
chr3	27239540	27239540	T	G	ENSMUST00000046515.14	1	ENSMUSG00000027698	missense	L/R	149	Nceh1	ENSMUST00000046515.14:c.446T>G	ENSMUSP00000045864.8:p.Leu149Arg	H-2-Kb	8	5	7	VSIEYRRV	VSIEYRLV	NetMHC	5.85	8.14	1.391	115	0.2	16.448	28.261	1.718	8.14	5.85	19.9	16.5	36.62182643	16.39607892	43.62545806	18.4391119	M6	-0.842857143	-0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.209	115	60	11	0.183333333	3qA3	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr3	105005546	105005546	C	A	ENSMUST00000077548.11	1	ENSMUSG00000062127	missense	A/S	341	Cttnbp2nl	ENSMUST00000077548.11:c.1021G>T	ENSMUSP00000076751.5:p.Ala341Ser	H-2-Kb	8	11	1	SAYSYAKA	AAYSYAKA	NetMHC	11.09	24.13	2.176	113	0.23	44.921	75.024	1.67	24.13	11.09	53.5	32.2	129.0446488	68.82401428	96.54727043	57.64212727	M6	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.208	113	73	15	0.205479452	3qF2.2	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr3	88245865	88245865	T	G	ENSMUST00000171887.3	1	ENSMUSG00000104445	missense	S/R	261	Rhbg	ENSMUST00000171887.3:c.781A>C	ENSMUSP00000130767.1:p.Ser261Arg	H-2-Kb	8	8	4	STLRTFAL	STLSTFAL	NetMHC	23.82	41.85	1.757	149	0.188	131.83	198.362	1.505	41.85	23.82	149.7	97.8	247.0244836	165.8593656	264.691503	174.8799418	M6	0.9	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.197	149	0	0	NA	3qF1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr3	126981840	126981840	T	G	ENSMUST00000182078.8	5	ENSMUSG00000032826	missense	N/H	831	Ank2	ENSMUST00000182078.8:c.2491A>C	ENSMUSP00000138753.3:p.Asn831His	H-2-Kb	8	10	2	MHYLRYSL	MNYLRYSL	NetMHC	24.95	7.35	0.295	158	0.203	127.674	38.762	0.304	7.35	24.95	8.7	56.4	68.82401428	198.9481935	81.60936526	225.2890066	M6	-0.5	-0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.201	158	0	0	NA	3qG2	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr3	49744983	49744983	A	G	ENSMUST00000035931.12	1	ENSMUSG00000037892	missense	V/A	1010	Pcdh18	ENSMUST00000035931.12:c.3029T>C	ENSMUSP00000039245.7:p.Val1010Ala	H-2-Kb	8	8	4	MSSAFQRL	MSSVFQRL	NetMHC	25.6	16.67	0.651	162	0.173	49.318	38.527	0.781	16.67	25.6	30.2	49.8	46.85328006	48.83599043	51.01994663	60.08139392	M6	-0.171428571	-0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.181	162	0	0	NA	3qC	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.9710218	sgMsh2	cell line
chr3	88245865	88245865	T	G	ENSMUST00000171887.3	1	ENSMUSG00000104445	missense	S/R	261	Rhbg	ENSMUST00000171887.3:c.781A>C	ENSMUSP00000130767.1:p.Ser261Arg	H-2-Kb	8	11	1	RTFALSAL	STFALSAL	NetMHC	38.74	14.57	0.376	149	0.188	51.2	21.65	0.423	14.57	38.74	20.3	53.9	23.00064421	48.49980584	29.22402293	57.90819124	M6	1.785714286	1.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.197	149	0	0	NA	3qF1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr3	95324761	95324761	T	C	ENSMUST00000015841.11	1	ENSMUSG00000015697	missense	T/A	1197	Setdb1	ENSMUST00000015841.11:c.3589A>G	ENSMUSP00000015841.5:p.Thr1197Ala	H-2-Kb	8	6	6	IAIKSANM	IAIKSTNM	NetMHC	52.92	235.57	4.451	143	0.175	168.576	468.607	2.78	235.57	52.92	336.4	126.9	600.8139392	210.2519343	666.4076901	228.4230889	M6	0.257142857	0.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.183	143	95	22	0.231578947	3qF2.1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.981751322	sgMsh2	cell line
chr3	59217615	59217615	A	G	ENSMUST00000196583.4	5	ENSMUSG00000036353	missense	V/A	213	P2ry12	ENSMUST00000196583.4:c.638T>C	ENSMUSP00000143036.1:p.Val213Ala	H-2-Kb	8	8	4	IVIACYSL	IVIVCYSL	NetMHC	84.61	66.24	0.783	189	0.212	116.467	110.623	0.95	66.24	84.61	99.7	89.8	156.5813381	163.2074578	121.5458122	143.1330745	M6	2.1	2.2	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.211	189	2	0	0	3qD	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr3	59319877	59319877	CT	C	ENSMUST00000039419.11	5	ENSMUSG00000036334	FS	K/X	2125	Igsf10	ENSMUST00000039419.11:c.6374del	ENSMUSP00000037246.6:p.Lys2125ArgfsTer50	H-2-Kb	8	45	0	TGSYFMPM	NA	NetMHCpan	71.2	NA	NA	194	0.211	309.636	NA	NA	NA	93.57	NA	71.2	NA	535.475987	NA	525.7024488	M6	0.357142857	0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.211	194	0	0	NA	3qD	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr3	116895535	116895535	T	C	ENSMUST00000195905.4	5	ENSMUSG00000033386	missense	Y/H	352	Frrs1	ENSMUST00000195905.4:c.1054T>C	ENSMUSP00000143255.1:p.Tyr352His	H-2-Kb	8	6	6	ITYEKHNV	ITYEKYNV	NetMHCpan	72.9	26.7	0.366	245	0.241	114.948	62.295	0.542	19.92	95.08	26.7	72.9	97.89037676	134.8155538	117.9614222	155.8619122	M6	-1.7	-1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	245	118	15	0.127118644	3qG1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr3	28794409	28794409	G	A	ENSMUST00000060500.8	1	ENSMUSG00000050192	missense	C/Y	139	Eif5a2	ENSMUST00000060500.8:c.416G>A	ENSMUSP00000050289.7:p.Cys139Tyr	H-2-Kb	8	7	5	VSVMYAMS	VSVMCAMS	SMM	72.734	814.217	11.194	271	0.251	100.979	2855.808	28.281	5114.17	120.91	4897.4	389.8	814.2166892	72.73442335	792.027024	81.04757034	M6	0.985714286	1.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.254	271	16	1	0.0625	3qA3	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr3	59217615	59217615	A	G	ENSMUST00000196583.4	5	ENSMUSG00000036353	missense	V/A	213	P2ry12	ENSMUST00000196583.4:c.638T>C	ENSMUSP00000143036.1:p.Val213Ala	H-2-Kb	8	9	3	VIACYSLI	VIVCYSLI	NetMHCpan	203.7	96.5	0.474	189	0.212	265.587	146.812	0.553	73.1	238.26	96.5	203.7	197.1242255	292.9139126	202.1808416	392.4099402	M6	2.142857143	2.142857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.211	189	2	0	0	3qD	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr3	87913145	87913145	CT	C	ENSMUST00000005017.14	1	ENSMUSG00000004897	FS	F/X	48	Hdgf	ENSMUST00000005017.14:c.150del	ENSMUSP00000005017.8:p.Phe50LeufsTer91	H-2-Kb	8	9	5	QVFFLGPM	QVFFFGTH	NetMHCpan	133.5	6279.1	47.034	142	0.183	329.335	4621.078	14.032	8076.13	242.05	6279.1	133.5	2963.056959	416.6198901	1332.723329	491.7450535	M6	1.928571429	1.928571429	TRUE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1831	142	547	46	0.084095064	3qF1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.982287799	sgMsh2	cell line
chr3	59319877	59319877	CT	C	ENSMUST00000039419.11	5	ENSMUSG00000036334	FS	K/X	2125	Igsf10	ENSMUST00000039419.11:c.6374del	ENSMUSP00000037246.6:p.Lys2125ArgfsTer50	H-2-Kb	8	16	0	LSWTVRSL	NA	NetMHCpan	175.3	NA	NA	194	0.211	208.072	NA	NA	NA	288.96	NA	175.3	NA	234.2825811	NA	181.861178	M6	0.042857143	0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.211	194	0	0	NA	3qD	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr3	88449737	88449737	A	G	ENSMUST00000029700.11	1	ENSMUSG00000028064	missense	L/P	309	Sema4a	ENSMUST00000029700.11:c.926T>C	ENSMUSP00000029700.5:p.Leu309Pro	H-2-Kb	8	5	7	IIRHAVPL	IIRHAVLL	SMM	169.332	448.477	2.649	111	0.054	247.434	538.144	2.175	1021.35	349.03	569.6	310.9	448.476819	169.3323751	506.6872779	183.9670312	M6	0.714285714	0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.066	111	8	0	0	3qF1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.354074247	sgMsh2	cell line
chr3	87913145	87913145	CT	C	ENSMUST00000005017.14	1	ENSMUSG00000004897	FS	F/X	48	Hdgf	ENSMUST00000005017.14:c.150del	ENSMUSP00000005017.8:p.Phe50LeufsTer91	H-2-Kb	8	54	0	TTLQSRPL	NA	SMM	174.478	NA	NA	142	0.183	286.989	NA	NA	NA	375.03	NA	851.1	NA	174.4777291	NA	198.9481935	M6	-0.5	-0.5	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1831	142	547	46	0.084095064	3qF1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.982287799	sgMsh2	cell line
chr3	108883558	108883558	T	C	ENSMUST00000102620.9	1	ENSMUSG00000045326	missense	T/A	51	Fndc7	ENSMUST00000102620.9:c.151A>G	ENSMUSP00000099680.3:p.Thr51Ala	H-2-Kb	8	5	7	ITVEWTAV	ITVEWTTV	SMMPMBEC	324.146	510.199	1.574	252	0.234	373.787	554.126	1.482	686.4	388.04	465.6	437.7	598.0534499	359.5340277	510.1994663	324.1455024	M6	0.628571429	0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.225	252	0	0	NA	3qF3	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr3	108464426	108464426	AT	A	ENSMUST00000106625.9	5	ENSMUSG00000040412	FS	M/X	711	5330417C22Rik	ENSMUST00000106625.9:c.2131del	ENSMUSP00000102236.3:p.Met711TrpfsTer38	H-2-Kb	8	34	0	SQPMSARL	NA	NetMHC	403.32	NA	NA	63	0.127	468.776	NA	NA	NA	403.32	NA	1378.8	NA	453.6699358	NA	483.8825938	M6	-0.414285714	-0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.134	63	31	0	0	3qF3	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.718878017	sgMsh2	cell line
chr3	89948174	89948174	A	T	ENSMUST00000168276.7	5	ENSMUSG00000060671	missense	N/K	505	Atp8b2	ENSMUST00000168276.7:c.1515T>A	ENSMUSP00000128423.1:p.Asn505Lys	H-2-Kb	8	8	4	AARKFGFV	AARNFGFV	SMM	327.145	277.805	0.849	169	0.047	387.103	320.286	0.827	301.93	404.6	568.9	578.9	277.8049629	327.1447838	338.6413603	369.6068402	M6	0.4	0.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.055	169	71	2	0.028169014	3qF1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.295061873	sgMsh2	cell line
chr3	108464426	108464426	AT	A	ENSMUST00000106625.9	5	ENSMUSG00000040412	FS	M/X	711	5330417C22Rik	ENSMUST00000106625.9:c.2131del	ENSMUSP00000102236.3:p.Met711TrpfsTer38	H-2-Kb	8	17	0	MSLTSGSL	NA	SMM	194.42	NA	NA	63	0.127	316.602	NA	NA	NA	408.95	NA	475.7	NA	194.4195797	NA	224.2538976	M6	0.585714286	0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.134	63	31	0	0	3qF3	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.718878017	sgMsh2	cell line
chr3	106164811	106164811	A	G	ENSMUST00000063062.8	1	ENSMUSG00000040809	missense	V/A	16	Chil3	ENSMUST00000063062.8:c.47T>C	ENSMUSP00000053923.8:p.Val16Ala	H-2-Kb	8	6	6	AILLNAQL	AILLNVQL	SMMPMBEC	190.432	549.212	2.884	668	0.088	366.043	1259.005	3.439	1937.13	491.24	1821.8	847.9	696.209588	240.8463117	549.2119775	190.4320313	M6	1.528571429	1.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.097	668	2	0	0	3qF2.2	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.520381848	sgMsh2	cell line
chr3	69575824	69575824	A	G	ENSMUST00000061826.2	1	ENSMUSG00000043300	missense	Y/H	35	B3galnt1	ENSMUST00000061826.2:c.103T>C	ENSMUSP00000058363.1:p.Tyr35His	H-2-Kb	8	7	5	LVIWHLSL	LVIWYLSL	NetMHCpan	130.4	33.6	0.258	103	0.117	429.29	80.664	0.188	62.76	492.62	33.6	130.4	111.6194813	432.2549746	98.56892043	426.324214	M6	1.628571429	1.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.124	103	14	1	0.071428571	3qE1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.665230404	sgMsh2	cell line
chr3	68927791	68927791	A	G	ENSMUST00000107812.7	5	ENSMUSG00000027778	missense	I/T	439	Ift80	ENSMUST00000107812.7:c.1316T>C	ENSMUSP00000103442.1:p.Ile439Thr	H-2-Kb	8	11	1	TIFLFEAS	IIFLFEAS	SMM	114.483	40.902	0.357	98	0.265	496.639	214.122	0.431	378.83	1363.31	368.3	827.8	40.90157201	114.482736	59.94321055	165.4778997	M6	1.628571429	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.276	98	41	14	0.341463415	3qE1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr3	59319877	59319877	CT	C	ENSMUST00000039419.11	5	ENSMUSG00000036334	FS	K/X	2125	Igsf10	ENSMUST00000039419.11:c.6374del	ENSMUSP00000037246.6:p.Lys2125ArgfsTer50	H-2-Kb	9	44	0	MTGSYFMPM	NA	NetMHC	50.32	NA	NA	194	0.211	82.887	NA	NA	NA	50.32	NA	50.4	NA	115.3745446	NA	141.6609011	M6	0.357142857	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.211	194	0	0	NA	3qD	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr3	49754760	49754760	A	T	ENSMUST00000035931.12	1	ENSMUSG00000037892	missense	I/K	702	Pcdh18	ENSMUST00000035931.12:c.2105T>A	ENSMUSP00000039245.7:p.Ile702Lys	H-2-Kb	9	7	5	VSMIKIISL	VSMIIIISL	NetMHCpan	40.7	239.5	5.885	198	0.045	93.33	330.577	3.542	335.13	70.18	239.5	40.7	381.1623536	136.1789559	326.0243217	116.4796347	M6	2.071428571	2.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.053	198	0	0	NA	3qC	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.28433235	sgMsh2	cell line
chr3	59217615	59217615	A	G	ENSMUST00000196583.4	5	ENSMUSG00000036353	missense	V/A	213	P2ry12	ENSMUST00000196583.4:c.638T>C	ENSMUSP00000143036.1:p.Val213Ala	H-2-Kb	9	8	4	IVIACYSLI	IVIVCYSLI	NetMHC	82.85	63.52	0.767	189	0.212	152.628	129.073	0.846	63.52	82.85	149.1	123.6	125.6348137	198.6598028	132.5104107	181.6561058	M6	2.142857143	2.2	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.211	189	2	0	0	3qD	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr3	89092053	89092053	C	T	ENSMUST00000200659.1	5	ENSMUSG00000105204	missense	G/S	410	Gm43738	ENSMUST00000200659.1:c.1228G>A	ENSMUSP00000142694.1:p.Gly410Ser	H-2-Kb	9	6	6	STLELSSPL	STLELGSPL	NetMHC	97.07	267.13	2.752	126	0.175	229.295	508.353	2.217	267.13	97.07	324.7	166.1	692.0062231	292.4893114	709.9863514	405.7420321	M6	0.671428571	0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.188	126	0	0	NA	3qF1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr3	116605233	116605233	GT	G	ENSMUST00000198311.4	1	ENSMUSG00000027959	FS	F/X	55	Sass6	ENSMUST00000198311.4:c.168del	ENSMUSP00000143233.1:p.Leu57CysfsTer14	H-2-Kb	9	14	0	ITLLYLRKI	NA	NetMHCpan	81.7	NA	NA	92	0.217	238.592	NA	NA	NA	113.06	NA	81.7	NA	466.7775928	NA	364.1245828	M6	0.885714286	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.204	92	9	0	0	3qG1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr3	53043350	53043350	T	G	ENSMUST00000059562.13	1	ENSMUSG00000048332	missense	L/R	15	Lhfp	ENSMUST00000059562.13:c.44T>G	ENSMUSP00000056364.7:p.Leu15Arg	H-2-Kb	9	6	6	VIWALRSFL	VIWALLSFL	NetMHCpan	126.9	167.1	1.317	181	0.204	268.467	195.773	0.729	119.48	160.88	167.1	126.9	224.4450336	378.5384504	234.557865	376.053816	M6	0.857142857	1.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.197	181	4	2	0.5	3qC	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr3	68927791	68927791	A	G	ENSMUST00000107812.7	5	ENSMUSG00000027778	missense	I/T	439	Ift80	ENSMUST00000107812.7:c.1316T>C	ENSMUSP00000103442.1:p.Ile439Thr	H-2-Kb	9	11	1	TIFLFEAST	IIFLFEAST	NetMHC	181.4	78.59	0.433	98	0.265	236.705	140.504	0.594	78.59	181.4	219.4	418.7	139.6722084	239.3922023	141.3350901	234.0183969	M6	0.885714286	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.276	98	41	14	0.341463415	3qE1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr3	59319877	59319877	CT	C	ENSMUST00000039419.11	5	ENSMUSG00000036334	FS	K/X	2125	Igsf10	ENSMUST00000039419.11:c.6374del	ENSMUSP00000037246.6:p.Lys2125ArgfsTer50	H-2-Kb	9	36	0	PTMSFHSPM	NA	SMM	151.743	NA	NA	194	0.211	205.998	NA	NA	NA	181.72	NA	235.2	NA	151.7434661	NA	230.2767015	M6	0.028571429	0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.211	194	0	0	NA	3qD	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr3	49744983	49744983	A	G	ENSMUST00000035931.12	1	ENSMUSG00000037892	missense	V/A	1010	Pcdh18	ENSMUST00000035931.12:c.3029T>C	ENSMUSP00000039245.7:p.Val1010Ala	H-2-Kb	9	10	2	SAFQRLLPA	SVFQRLLPA	NetMHCpan	169.1	221.8	1.312	162	0.173	325.995	371.397	1.139	424.18	359.31	221.8	169.1	391.8411118	348.4255546	350.9538411	303.5638135	M6	0.371428571	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.181	162	0	0	NA	3qC	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.9710218	sgMsh2	cell line
chr3	108464426	108464426	AT	A	ENSMUST00000106625.9	5	ENSMUSG00000040412	FS	M/X	711	5330417C22Rik	ENSMUST00000106625.9:c.2131del	ENSMUSP00000102236.3:p.Met711TrpfsTer38	H-2-Kb	9	38	0	SARLSSSPL	NA	SMM	306.274	NA	NA	63	0.127	447.926	NA	NA	NA	360.98	NA	1051.3	NA	306.2739079	NA	534.872168	M6	-0.128571429	-0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.134	63	31	0	0	3qF3	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.718878017	sgMsh2	cell line
chr3	87913145	87913145	CT	C	ENSMUST00000005017.14	1	ENSMUSG00000004897	FS	F/X	48	Hdgf	ENSMUST00000005017.14:c.150del	ENSMUSP00000005017.8:p.Phe50LeufsTer91	H-2-Kb	9	8	6	YQVFFLGPM	YQVFFFGTH	NetMHCpan	208	10598.6	50.955	142	0.183	455.442	6575.522	14.438	9408.99	400.25	10598.6	208	3742.053566	510.6343193	3063.726549	525.1096507	M6	1.928571429	1.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1831	142	547	46	0.084095064	3qF1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.982287799	sgMsh2	cell line
chr3	126981840	126981840	T	G	ENSMUST00000182078.8	5	ENSMUSG00000032826	missense	N/H	831	Ank2	ENSMUST00000182078.8:c.2491A>C	ENSMUSP00000138753.3:p.Asn831His	H-2-Kb	9	10	2	MHYLRYSLE	MNYLRYSLE	SMM	59.856	24.553	0.41	158	0.203	255.108	63.301	0.248	97.41	442.88	277.7	550	24.55330734	59.85631826	29.19106903	67.33641643	M6	-0.542857143	-0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.201	158	0	0	NA	3qG2	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr3	59319877	59319877	CT	C	ENSMUST00000039419.11	5	ENSMUSG00000036334	FS	K/X	2125	Igsf10	ENSMUST00000039419.11:c.6374del	ENSMUSP00000037246.6:p.Lys2125ArgfsTer50	H-2-Kb	9	46	0	GSYFMPMEL	NA	NetMHCpan	233.3	NA	NA	194	0.211	268.388	NA	NA	NA	477.81	NA	233.3	NA	242.1642333	NA	294.6117067	M6	0.571428571	0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.211	194	0	0	NA	3qD	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr3	93443526	93443526	A	G	ENSMUST00000064257.5	5	ENSMUSG00000052415	missense	Q/R	91	Tchh	ENSMUST00000064257.5:c.272A>G	ENSMUSP00000069525.5:p.Gln91Arg	H-2-Kb	9	7	5	YALDRAAEL	YALDQAAEL	SMM	453.012	1368.075	3.02	150	0.167	474.117	1769.9	3.733	2087.83	556.82	1828.8	475.9	1368.075294	453.0123063	1710.999962	472.3348608	M6	-0.042857143	-0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.177	150	0	0	NA	3qF2.1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.949562754	sgMsh2	cell line
chr4	15976113	15976113	T	C	ENSMUST00000029879.14	1	ENSMUSG00000028224	missense	V/A	358	Nbn	ENSMUST00000029879.14:c.1073T>C	ENSMUSP00000029879.8:p.Val358Ala	H-2-Db	9	8	4	SAPANMTTY	SAPVNMTTY	NetMHC	96.63	49.38	0.511	77	0.26	191.873	113.819	0.593	49.38	96.63	233	314.7	133.5426531	235.2989559	94.09574822	148.4465128	M6	-0.585714286	-0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.27	77	39	11	0.282051282	4qA2	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr4	70433397	70433397	A	G	ENSMUST00000107359.8	1	ENSMUSG00000039270	missense	S/P	496	Megf9	ENSMUST00000107359.8:c.1486T>C	ENSMUSP00000102982.2:p.Ser496Pro	H-2-Db	9	9	3	SSPENSTSA	SSSENSTSA	NetMHC	122.38	4730.47	38.654	108	0.296	327.502	1353.736	4.134	4730.47	122.38	1651.7	300.5	723.8023686	354.5030696	1055.77166	543.9638013	M6	-1.3	-1.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.31	108	19	1	0.052631579	4qC2	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr3	159515518	159515518	A	T	ENSMUST00000120272.7	1	ENSMUSG00000028175	missense	K/M	162	Depdc1a	ENSMUST00000120272.7:c.485A>T	ENSMUSP00000113216.1:p.Lys162Met	H-2-Db	9	4	8	FSQENTEMI	FSQENTEKI	NetMHCpan	102.5	156.8	1.53	196	0.168	139.828	186.102	1.331	162.01	143.12	156.8	102.5	210.1938476	139.8363244	224.6828893	139.8202261	M6	-1.185714286	-1.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.174	196	0	0	NA	3qH4	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.93346847	sgMsh2	cell line
chr4	70272739	70272739	CT	C	ENSMUST00000144099.7	1	ENSMUSG00000039298	FS	Q/X	1023	Cdk5rap2	ENSMUST00000144099.7:c.3068del	ENSMUSP00000119891.1:p.Gln1023ArgfsTer56	H-2-Db	9	32	0	WTVTNIQAL	NA	NetMHCpan	206.8	NA	NA	127	0.228	342.414	NA	NA	NA	288.03	NA	206.8	NA	582.9348234	NA	396.7984801	M6	0.942857143	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.218	127	36	0	0	4qC2	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr4	45307923	45307923	CT	C	ENSMUST00000044673.8	1	ENSMUSG00000035601	FS	L/X	203	Trmt10b	ENSMUST00000044673.8:c.612del	ENSMUSP00000041052.2:p.Pro205LeufsTer8	H-2-Db	9	9	5	FSLFLWKPL	FSLFPLETL	SMM	212.628	545.281	2.564	218	0.05	281.074	540.89	1.924	345.62	310.63	884.2	463.6	545.2805415	212.6277776	536.5003381	251.518538	M6	1.114285714	1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.05	218	65	0	0	4qB1	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.268238066	sgMsh2	cell line
chr3	155137385	155137385	AT	A	ENSMUST00000194376.1	1	ENSMUSG00000028182	FS	N/X	298	Lrriq3	ENSMUST00000194376.1:c.897del	ENSMUSP00000142127.1:p.His300ThrfsTer32	H-2-Db	9	7	7	KLWVNFTEV	NA	SMMPMBEC	272.001	NA	NA	191	0.058	443.324	NA	NA	NA	666.64	NA	596.5	NA	290.1482797	NA	272.0006864	M6	0.371428571	0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.066	191	0	0	NA	3qH4	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.354074247	sgMsh2	cell line
chr4	15976113	15976113	T	C	ENSMUST00000029879.14	1	ENSMUSG00000028224	missense	V/A	358	Nbn	ENSMUST00000029879.14:c.1073T>C	ENSMUSP00000029879.8:p.Val358Ala	H-2-Db	10	8	4	SAPANMTTYV	SAPVNMTTYV	NetMHC	5.4	4.11	0.761	77	0.26	291.09	280.708	0.964	4.11	5.4	16.6	22.1	544.816184	560.0799166	587.0431165	624.6978338	M6	0.242857143	0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.27	77	39	11	0.282051282	4qA2	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr3	127032016	127032016	T	C	ENSMUST00000182994.7	1	ENSMUSG00000032826	missense	T/A	445	Ank2	ENSMUST00000182994.7:c.1333A>G	ENSMUSP00000138089.1:p.Thr445Ala	H-2-Kb	8	12	1	AAKLFPPL	TAKLFPPL	NetMHCpan	52.4	50	0.954	173	0.168	91.882	75.718	0.824	63.18	71.37	50	52.4	97.89037676	123.5207728	88.25513833	112.3931906	M6	0.728571429	0.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.182	173	0	0	NA	3qG2	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.976386561	sgMsh2	cell line
chr4	45307923	45307923	CT	C	ENSMUST00000044673.8	1	ENSMUSG00000035601	FS	L/X	203	Trmt10b	ENSMUST00000044673.8:c.612del	ENSMUSP00000041052.2:p.Pro205LeufsTer8	H-2-Kb	8	10	4	SLFLWKPL	SLFPLETL	NetMHCpan	45.9	278.7	6.072	218	0.05	65.889	861.472	13.075	1564.85	78.53	278.7	45.9	803.0452175	78.47656766	919.8986892	53.30156983	M6	1.114285714	1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.05	218	65	0	0	4qB1	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.268238066	sgMsh2	cell line
chr3	146913305	146913305	GC	G	ENSMUST00000037942.10	5	ENSMUSG00000036745	FS	P/X	322	Ttll7	ENSMUST00000037942.10:c.969del	ENSMUSP00000043753.7:p.Ser325AlafsTer48	H-2-Kb	8	32	0	SSHGFWRL	NA	NetMHCpan	33.2	NA	NA	75	0.24	41.759	NA	NA	NA	103.94	NA	33.2	NA	42.04748265	NA	41.47056956	M6	-0.457142857	-0.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.231	75	27	0	0	3qH2	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr4	19366491	19366491	C	T	ENSMUST00000102999.1	1	ENSMUSG00000056494	missense	P/L	184	Cngb3	ENSMUST00000102999.1:c.551C>T	ENSMUSP00000100064.1:p.Pro184Leu	H-2-Kb	8	7	5	FSFKLQRV	FSFKPQRV	NetMHC	132.45	670.28	5.061	97	0.206	162.332	578.758	3.565	670.28	132.45	886.1	178.2	386.1357391	153.3698525	487.2367077	171.2931516	M6	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.233	97	0	0	NA	4qA3	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr3	148837574	148837574	C	A	ENSMUST00000197567.4	2	ENSMUSG00000028184	missense	R/M	838	Adgrl2	ENSMUST00000197567.4:c.2513G>T	ENSMUSP00000143626.1:p.Arg838Met	H-2-Kb	8	4	8	FAILMAHM	FAILMAHR	NetMHC	134.67	11710.49	86.957	146	0.151	323.503	7529.07	23.274	11710.49	134.67	13904.9	232.3	2628.693795	471.7805149	3347.649647	414.7056956	M6	1.785714286	1.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.163	146	48	0	0	3qH3	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.874456096	sgMsh2	cell line
chr4	70272739	70272739	CT	C	ENSMUST00000144099.7	1	ENSMUSG00000039298	FS	Q/X	1023	Cdk5rap2	ENSMUST00000144099.7:c.3068del	ENSMUSP00000119891.1:p.Gln1023ArgfsTer56	H-2-Kb	8	42	0	SILKSVHL	NA	NetMHC	164.45	NA	NA	127	0.228	314.914	NA	NA	NA	164.45	NA	339.6	NA	290.2284617	NA	340.9887101	M6	1.2	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.218	127	36	0	0	4qC2	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr3	146584619	146584619	A	C	ENSMUST00000200633.1	1	ENSMUSG00000028185	missense	L/R	199	Dnase2b	ENSMUST00000200633.1:c.596T>G	ENSMUSP00000142872.1:p.Leu199Arg	H-2-Kb	8	5	7	STFHWKRI	STFHWKLI	SMMPMBEC	144.457	341.775	2.366	101	0.05	192.819	354.532	1.839	367.29	243.23	186.2	161.9	499.7352678	223.738128	341.7747702	144.4574685	M6	-0.842857143	-0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.055	101	0	0	NA	3qH2	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.295061873	sgMsh2	cell line
chr4	52995837	52995837	C	T	ENSMUST00000188045.6	1	ENSMUSG00000015242	missense	A/V	95	Nipsnap3a	ENSMUST00000188045.6:c.284C>T	ENSMUSP00000140727.1:p.Ala95Val	H-2-Kb	8	10	2	RVAVYKAL	RAAVYKAL	SMM	294.266	289.561	0.984	84	0.298	307.769	334.747	1.088	327.72	438.89	367.5	299.5	289.5609548	294.2659418	341.7747702	316.0385059	M6	1.514285714	1.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.316	84	0	0	NA	4qB2	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr3	146650711	146650711	TG	T	ENSMUST00000049703.5	1	ENSMUSG00000090202	FS	P/X	147	4930503B20Rik	ENSMUST00000049703.5:c.441del	ENSMUSP00000051453.5:p.Ile148SerfsTer28	H-2-Kb	8	13	0	WTQDFLRL	NA	SMM	151.614	NA	NA	178	0.23	313.889	NA	NA	NA	463.44	NA	520.5	NA	151.6142424	NA	164.3387578	M6	-0.257142857	-0.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.23	178	0	0	NA	3qH2	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr4	41121239	41121239	A	G	ENSMUST00000030138.8	1	ENSMUSG00000028430	missense	V/A	339	Nol6	ENSMUST00000030138.8:c.1016T>C	ENSMUSP00000030138.8:p.Val339Ala	H-2-Kb	8	6	6	VALLKAWL	VALLKVWL	SMM	374.749	1083.278	2.891	84	0.357	406.808	1087.033	2.672	1746.99	486.53	971.2	435.4	1083.278191	374.7485835	1090.787117	378.2160895	M6	1.457142857	1.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.367	84	24	11	0.458333333	4qA5	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr3	127032016	127032016	T	C	ENSMUST00000182994.7	1	ENSMUSG00000032826	missense	T/A	445	Ank2	ENSMUST00000182994.7:c.1333A>G	ENSMUSP00000138089.1:p.Thr445Ala	H-2-Kb	9	11	2	IAAKLFPPL	ITAKLFPPL	NetMHCpan	24.7	26.4	1.069	173	0.168	78.474	101.297	1.291	52.54	47.02	26.4	24.7	151.3944658	109.9284236	150.0548372	116.211739	M6	0.728571429	1.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.182	173	0	0	NA	3qG2	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.976386561	sgMsh2	cell line
chr3	146913305	146913305	GC	G	ENSMUST00000037942.10	5	ENSMUSG00000036745	FS	P/X	322	Ttll7	ENSMUST00000037942.10:c.969del	ENSMUSP00000043753.7:p.Ser325AlafsTer48	H-2-Kb	9	32	0	SSHGFWRLI	NA	NetMHC	88.95	NA	NA	75	0.24	163.427	NA	NA	NA	88.95	NA	124.5	NA	202.3531643	NA	250.1785091	M6	0.3	0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.231	75	27	0	0	3qH2	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr3	138480720	138480720	A	G	ENSMUST00000029804.12	1	ENSMUSG00000005813	missense	Y/H	83	Metap1	ENSMUST00000029804.12:c.247T>C	ENSMUSP00000029804.8:p.Tyr83His	H-2-Kb	9	7	5	AGYRHTGKL	AGYRYTGKL	NetMHCpan	63.1	17.5	0.277	316	0.231	163.612	99.448	0.608	18.49	100.63	17.5	63.1	271.7127388	338.9299909	180.405594	226.5948317	M6	-1.457142857	-1.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.229	316	127	23	0.181102362	3qG3	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr4	70272739	70272739	CT	C	ENSMUST00000144099.7	1	ENSMUSG00000039298	FS	Q/X	1023	Cdk5rap2	ENSMUST00000144099.7:c.3068del	ENSMUSP00000119891.1:p.Gln1023ArgfsTer56	H-2-Kb	9	50	0	MTLPYYQHA	NA	NetMHC	103.06	NA	NA	127	0.228	432.025	NA	NA	NA	103.06	NA	247.1	NA	695.2003787	NA	616.9500447	M6	-0.757142857	-0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.218	127	36	0	0	4qC2	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr3	135423288	135423288	T	C	ENSMUST00000029815.7	1	ENSMUSG00000028165	missense	D/G	25	Cisd2	ENSMUST00000029815.7:c.74A>G	ENSMUSP00000029815.7:p.Asp25Gly	H-2-Kb	9	11	1	GSITGFARL	DSITGFARL	NetMHC	107.33	235.2	2.191	29	0.172	230.24	498.281	2.164	235.2	107.33	359.4	136.7	738.0911534	478.7513372	637.1621954	323.779986	M6	1.042857143	1.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.192	29	28	4	0.142857143	3qG3	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr3	157312902	157312902	C	T	ENSMUST00000074015.10	1	ENSMUSG00000040037	missense	L/F	347	Negr1	ENSMUST00000074015.10:c.1039C>T	ENSMUSP00000073664.4:p.Leu347Phe	H-2-Kb	9	12	9	IFYLKNAIF	IFYLKNAIL	SMM	146.592	86.918	0.593	139	0.043	161.23	88.179	0.547	89.44	172.75	131.7	353.4	86.91805512	146.5919088	86.54659777	149.7097207	M6	0.6	0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.039	139	0	0	NA	3qH4	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.209225692	sgMsh2	cell line
chr4	70272739	70272739	CT	C	ENSMUST00000144099.7	1	ENSMUSG00000039298	FS	Q/X	1023	Cdk5rap2	ENSMUST00000144099.7:c.3068del	ENSMUSP00000119891.1:p.Gln1023ArgfsTer56	H-2-Kb	9	41	0	RSILKSVHL	NA	NetMHC	173.88	NA	NA	127	0.228	296.765	NA	NA	NA	173.88	NA	227	NA	366.5303993	NA	410.4403034	M6	1.2	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.218	127	36	0	0	4qC2	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr4	45307923	45307923	CT	C	ENSMUST00000044673.8	1	ENSMUSG00000035601	FS	L/X	203	Trmt10b	ENSMUST00000044673.8:c.612del	ENSMUSP00000041052.2:p.Pro205LeufsTer8	H-2-Kb	9	9	5	FSLFLWKPL	FSLFPLETL	NetMHCpan	127.2	1483.2	11.66	218	0.05	215.539	984.497	4.568	761.94	209.13	1483.2	127.2	889.4263671	253.577082	1079.567993	221.9473684	M6	1.114285714	1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.05	218	65	0	0	4qB1	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.268238066	sgMsh2	cell line
chr4	47405561	47405561	T	C	ENSMUST00000007757.14	1	ENSMUSG00000007613	missense	I/T	388	Tgfbr1	ENSMUST00000007757.14:c.1163T>C	ENSMUSP00000007757.8:p.Ile388Thr	H-2-Kb	9	11	1	TNMKHFESF	INMKHFESF	SMMPMBEC	178.752	107.957	0.604	164	0.067	231.064	113.058	0.489	118.16	274.51	88.1	243.8	127.382568	218.3282833	107.9567993	178.7516256	M6	-0.557142857	-0.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.069	164	47	7	0.14893617	4qB1	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.370168531	sgMsh2	cell line
chr3	155137385	155137385	AT	A	ENSMUST00000194376.1	1	ENSMUSG00000028182	FS	N/X	298	Lrriq3	ENSMUST00000194376.1:c.897del	ENSMUSP00000142127.1:p.His300ThrfsTer32	H-2-Kb	9	21	0	LTFHQYKGI	NA	NetMHCpan	249.3	NA	NA	191	0.058	334.616	NA	NA	NA	317.47	NA	249.3	NA	377.6678362	NA	351.7628732	M6	-0.714285714	-0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.066	191	0	0	NA	3qH4	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.354074247	sgMsh2	cell line
chr3	144696887	144696887	T	C	ENSMUST00000198254.4	1	ENSMUSG00000037062	missense	Q/R	264	Sh3glb1	ENSMUST00000198254.4:c.791A>G	ENSMUSP00000143312.1:p.Gln264Arg	H-2-Kb	9	8	4	QCYRYMLDL	QCYQYMLDL	NetMHCpan	222.6	360.9	1.621	248	0.065	289.053	391.838	1.356	522.7	322.1	360.9	222.6	422.7756832	393.6497682	260.7654204	256.0059151	M6	-0.157142857	-0.157142857	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.068	248	1140	48	0.042105263	3qH2	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.36480377	sgMsh2	cell line
chr3	146650711	146650711	TG	T	ENSMUST00000049703.5	1	ENSMUSG00000090202	FS	P/X	147	4930503B20Rik	ENSMUST00000049703.5:c.441del	ENSMUSP00000051453.5:p.Ile148SerfsTer28	H-2-Kb	9	30	0	MTLKHLYHI	NA	NetMHCpan	217.1	NA	NA	178	0.23	488.474	NA	NA	NA	389.31	NA	217.1	NA	587.6381732	NA	626.9746764	M6	0.071428571	0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.23	178	0	0	NA	3qH2	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr4	41121239	41121239	A	G	ENSMUST00000030138.8	1	ENSMUSG00000028430	missense	V/A	339	Nol6	ENSMUST00000030138.8:c.1016T>C	ENSMUSP00000030138.8:p.Val339Ala	H-2-Kb	9	10	2	KAWLRQREL	KVWLRQREL	NetMHC	411.44	379.85	0.923	84	0.357	461.856	516.33	1.118	379.85	411.44	523.2	470.7	509.4598929	453.0123063	594.6343592	514.3396441	M6	-1.328571429	-1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.367	84	24	11	0.458333333	4qA5	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr3	155137385	155137385	AT	A	ENSMUST00000194376.1	1	ENSMUSG00000028182	FS	N/X	298	Lrriq3	ENSMUST00000194376.1:c.897del	ENSMUSP00000142127.1:p.His300ThrfsTer32	H-2-Kb	9	10	4	VNFTEVGWM	NA	SMMPMBEC	346.937	NA	NA	191	0.058	357.03	NA	NA	NA	962.72	NA	361.6	NA	352.4601324	NA	346.9365057	M6	0.485714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.066	191	0	0	NA	3qH4	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.354074247	sgMsh2	cell line
chr3	138282520	138282520	G	A	ENSMUST00000004232.9	1	ENSMUSG00000074207	missense	S/N	115	Adh1	ENSMUST00000004232.9:c.344G>A	ENSMUSP00000004232.9:p.Ser115Asn	H-2-Kb	9	5	7	SNFCSRNDL	SNFCSRSDL	NetMHCpan	447.4	283	0.633	252	0.238	453.632	386.125	0.851	602.55	1034.69	283	447.4	391.8411118	448.8590645	380.4083139	458.4056903	M6	-0.457142857	-0.457142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.244	252	0	0	NA	3qG3	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr4	136554214	136554214	T	A	ENSMUST00000105847.7	5	ENSMUSG00000036940	missense	K/M	682	Kdm1a	ENSMUST00000105847.7:c.2045A>T	ENSMUSP00000101473.1:p.Lys682Met	H-2-Db	9	6	6	FGNLNMVVL	FGNLNKVVL	NetMHC	15.68	50.61	3.228	102	0.059	76.126	173.018	2.273	50.61	15.68	144.4	54.4	281.5917975	138.8736979	201.6368945	97.8520661	M6	1.557142857	1.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.057	102	186	0	0	4qD3	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.305791395	sgMsh2	cell line
chr4	101137712	101137712	T	C	ENSMUST00000038463.14	1	ENSMUSG00000035275	missense	V/A	544	Raver2	ENSMUST00000038463.14:c.1631T>C	ENSMUSP00000043142.8:p.Val544Ala	H-2-Db	9	11	1	AASKNQTSL	VASKNQTSL	SMM	116.043	148.806	1.282	104	0.26	127.192	176.848	1.39	287.14	241.2	174.4	116.8	148.8058483	116.0432811	179.295752	137.5846553	M6	-1.342857143	-1.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.233	104	0	0	NA	4qC6	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr4	98973478	98973478	A	G	ENSMUST00000030286.13	5	ENSMUSG00000028556	missense	V/A	1334	Dock7	ENSMUST00000030286.13:c.4001T>C	ENSMUSP00000030286.7:p.Val1334Ala	H-2-Db	9	10	2	WALKNADET	WVLKNADET	SMMPMBEC	178.061	1136.501	6.383	97	0.227	273.241	2878.792	10.536	7340.81	297.24	4163.1	531.5	1594.483392	249.2412955	1136.501465	178.0614887	M6	-1.357142857	-0.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.237	97	53	24	0.452830189	4qC6	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr4	148013719	148013719	C	A	ENSMUST00000030879.11	1	ENSMUSG00000029016	missense	G/C	585	Clcn6	ENSMUST00000030879.11:c.1753G>T	ENSMUSP00000030879.5:p.Gly585Cys	H-2-Kb	8	7	5	IGLRCVPL	IGLRGVPL	NetMHC	43.77	214.71	4.905	98	0.031	63.858	210.562	3.297	214.71	43.77	245.3	104.6	206.414404	71.90183929	146.1302072	55.81359543	M6	1.114285714	1.214285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.047	98	7	0	0	4qE2	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.252143782	sgMsh2	cell line
chr4	139640665	139640665	A	G	ENSMUST00000039818.9	1	ENSMUSG00000028737	missense	T/A	306	Aldh4a1	ENSMUST00000039818.9:c.916A>G	ENSMUSP00000043821.9:p.Thr306Ala	H-2-Kb	8	8	4	RFRAFPRL	RFRTFPRL	SMM	54.293	53.179	0.979	76	0.053	87.052	74.246	0.853	78.71	97.59	160.4	151.2	53.17897962	54.29252	69.78145169	76.51384027	M6	0.085714286	0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.076	76	21	0	0	4qD3	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.407721861	sgMsh2	cell line
chr4	118709712	118709712	T	C	ENSMUST00000215117.2	5	ENSMUSG00000046790	missense	Y/H	102	Olfr1341	ENSMUST00000215117.2:c.304T>C	ENSMUSP00000149466.1:p.Tyr102His	H-2-Kb	8	7	5	VAQMHIFL	VAQMYIFL	SMM	148.163	38.26	0.258	170	0.229	165.39	32.63	0.197	19.66	154.18	27	176.6	38.25956254	148.1630809	44.02911945	190.4320313	M6	1.157142857	1.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.231	170	0	0	NA	4qD2.1	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr4	150897465	150897465	T	A	ENSMUST00000105674.7	5	ENSMUSG00000028964	missense	Y/F	139	Park7	ENSMUST00000105674.7:c.416A>T	ENSMUSP00000101299.1:p.Tyr139Phe	H-2-Kb	8	11	1	FSYSESRV	YSYSESRV	SMMPMBEC	135.75	171.688	1.265	59	0.339	244.427	279.259	1.143	332.19	316.77	385.1	417.5	226.3288934	172.0838049	171.6880231	135.7500506	M6	-1.071428571	-1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.327	59	361	96	0.265927978	4qE2	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr4	145110843	145110843	A	G	ENSMUST00000036579.13	5	ENSMUSG00000020220	missense	L/P	2730	Vps13d	ENSMUST00000036579.13:c.8189T>C	ENSMUSP00000043240.7:p.Leu2730Pro	H-2-Kb	8	9	3	AEPTFSRL	AELTFSRL	SMMPMBEC	241.402	93.916	0.389	35	0.314	485.047	174.205	0.359	243.76	724.77	1066.5	3183.6	104.6501849	245.323979	93.91608928	241.4015198	M6	-0.642857143	-0.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.327	35	38	2	0.052631579	4qE1	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr4	124942369	124942369	T	C	ENSMUST00000094769.12	1	ENSMUSG00000044730	missense	Y/H	158	9930104L06Rik	ENSMUST00000094769.12:c.472T>C	ENSMUSP00000154851.1:p.Tyr158His	H-2-Kb	9	4	8	SSYLKRKHL	SSYLKRKYL	NetMHC	33.01	28.82	0.873	102	0.088	69.015	66.097	0.958	28.82	33.01	64.1	72.7	68.09418088	65.32960014	84.382036	77.13473645	M6	-1.314285714	-1.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.07	102	10	2	0.2	4qD2.2	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.375533293	sgMsh2	cell line
chr4	121082857	121082857	TA	T	ENSMUST00000058754.8	1	ENSMUSG00000043207	FS	F/X	197	Zmpste24	ENSMUST00000058754.8:c.591del	ENSMUSP00000053900.2:p.Phe197LeufsTer9	H-2-Kb	9	5	7	IGGDYFLYM	IGGDYFFIY	NetMHCpan	84.1	5310.6	63.146	75	0.213	202.807	3020.239	14.892	6860.81	204.59	5310.6	84.1	716.3248211	250.6744092	729.8775406	201.0249672	M6	0.285714286	0.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.232	75	135	3	0.022222222	4qD2.2	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr4	120162006	120162006	T	G	ENSMUST00000030384.4	1	ENSMUSG00000028635	missense	I/S	64	Edn2	ENSMUST00000030384.4:c.191T>G	ENSMUSP00000030384.4:p.Ile64Ser	H-2-Kb	9	4	8	VYFCHLDSI	VYFCHLDII	SMMPMBEC	195.997	246.178	1.256	71	0.197	229.431	322.023	1.404	397.38	243.53	800.5	302.1	246.6664026	215.332707	246.1784313	195.99726	M6	0.871428571	0.871428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.182	71	0	0	NA	4qD2.1	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.976386561	sgMsh2	cell line
chr4	106407959	106407959	A	T	ENSMUST00000094933.4	5	ENSMUSG00000028514	missense	E/V	1762	Usp24	ENSMUST00000094933.4:c.5285A>T	ENSMUSP00000092538.4:p.Glu1762Val	H-2-Kb	9	3	9	KIFKMWNKV	KIFKMWNKE	NetMHC	304.04	5185.09	17.054	123	0.049	368.529	2979.874	8.086	5185.09	304.04	11986.2	414.7	774.6579817	382.0410236	665.6562285	355.017695	M6	-0.471428571	-0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.056	123	44	4	0.090909091	4qC7	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.300426634	sgMsh2	cell line
chr4	143726070	143726070	A	G	ENSMUST00000078695.4	5	ENSMUSG00000046435	missense	T/A	24	Gm13078	ENSMUST00000078695.4:c.70A>G	ENSMUSP00000077761.4:p.Thr24Ala	H-2-Kb	9	10	2	LAISALPNL	LTISALPNL	NetMHCpan	254.7	300.1	1.178	142	0.528	387.777	507.146	1.308	378.8	314.12	300.1	254.7	635.4918716	461.4344339	904.1698059	700.2449734	M6	1.142857143	1.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.516	142	0	0	NA	4qE1	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr4	139640665	139640665	A	G	ENSMUST00000039818.9	1	ENSMUSG00000028737	missense	T/A	306	Aldh4a1	ENSMUST00000039818.9:c.916A>G	ENSMUSP00000043821.9:p.Thr306Ala	H-2-Kb	9	4	8	QNLDRFRAF	QNLDRFRTF	SMM	226.001	239.944	1.062	76	0.053	312.457	354.948	1.136	385.37	323.44	1098.6	1301.5	239.9440583	226.0008122	324.526376	301.4740949	M6	-0.185714286	-0.185714286	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.076	76	21	0	0	4qD3	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.407721861	sgMsh2	cell line
chr4	147613749	147613749	T	G	ENSMUST00000105720.7	2	ENSMUSG00000066000	missense	I/L	168	Zfp979	ENSMUST00000105720.7:c.502A>C	ENSMUSP00000101345.1:p.Ile168Leu	H-2-Kb	9	3	9	ISLNQGTHL	ISLNQGTHI	NetMHC	325.18	1495.25	4.598	134	0.119	458.431	1423.225	3.105	1495.25	325.18	1351.2	351.6	1702.589693	685.6618719	1306.922997	565.2622723	M6	-0.528571429	-0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe	2	0.13	134	0	0	NA	4qE1	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.697418972	sgMsh2	cell line
chr4	118709712	118709712	T	C	ENSMUST00000215117.2	5	ENSMUSG00000046790	missense	Y/H	102	Olfr1341	ENSMUST00000215117.2:c.304T>C	ENSMUSP00000149466.1:p.Tyr102His	H-2-Kb	9	7	5	VAQMHIFLV	VAQMYIFLV	NetMHC	354.8	239.97	0.676	170	0.229	498.042	380.269	0.764	239.97	354.8	382	584.1	378.5384504	472.1826226	417.1094219	523.901932	M6	1.5	1.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.231	170	0	0	NA	4qD2.1	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr4	125641560	125641560	T	C	ENSMUST00000030676.7	1	ENSMUSG00000001985	missense	M/T	250	Grik3	ENSMUST00000030676.7:c.749T>C	ENSMUSP00000030676.7:p.Met250Thr	H-2-Kb	9	11	1	TMTEYYHFI	MMTEYYHFI	NetMHCpan	222.7	208.8	0.938	129	0.171	286.573	314.364	1.097	429.61	412.07	208.8	222.7	295.876178	291.1454451	332.8511027	282.000579	M6	-0.385714286	-0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.193	129	0	0	NA	4qD2.2	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr5	34848948	34848948	T	A	ENSMUST00000080036.2	1	ENSMUSG00000029104	missense	H/Q	1400	Htt	ENSMUST00000080036.2:c.4200T>A	ENSMUSP00000078945.2:p.His1400Gln	H-2-Db	9	8	4	NAIQNHIRL	NAIHNHIRL	NetMHCpan	42.5	130.5	3.071	213	0.038	128.892	250.646	1.945	219.7	50.95	130.5	42.5	281.5917975	206.8330804	333.8643134	252.6794949	M6	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;Vardict	3	0.046	213	28	1	0.035714286	5qB2	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.246779021	sgMsh2	cell line
chr5	72136781	72136781	T	C	ENSMUST00000031122.8	1	ENSMUSG00000029212	missense	V/A	466	Gabrb1	ENSMUST00000031122.8:c.1397T>C	ENSMUSP00000031122.7:p.Val466Ala	H-2-Db	9	8	6	FSLFNAVYW	FSLFNVVYW	NetMHC	94.1	147.67	1.569	125	0.232	178.854	212.699	1.189	147.67	94.1	543.8	445.4	277.7282132	246.388254	112.0908081	111.3191804	M6	0.985714286	1.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.212	125	0	0	NA	5qC3.2	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr4	155268251	155268251	T	G	ENSMUST00000030922.14	1	ENSMUSG00000029053	missense	K/T	473	Prkcz	ENSMUST00000030922.14:c.1418A>C	ENSMUSP00000030922.7:p.Lys473Thr	H-2-Db	9	5	7	FQVILETPI	FQVILEKPI	NetMHC	96.91	1744.74	18.004	202	0.079	220.135	1380.05	6.269	1744.74	96.91	2345.3	278.3	1015.359882	224.7087583	992.1332393	215.5609059	M6	1.6	1.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.081	202	16	0	0	4qE2	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.434545667	sgMsh2	cell line
chr5	63806698	63806698	A	T	ENSMUST00000159584.2	1	ENSMUSG00000090061	missense	K/N	1208	Nwd2	ENSMUST00000159584.2:c.3624A>T	ENSMUSP00000124712.1:p.Lys1208Asn	H-2-Db	9	7	5	ILICNALSI	ILICKALSI	NetMHCpan	141.1	7481.9	53.026	208	0.034	238.859	9795.44	41.009	18580.86	208.18	7481.9	141.1	8762.337965	269.537999	10828.54237	322.5299134	M6	1.828571429	2.485714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.041	208	0	0	NA	5qC3.1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.219955214	sgMsh2	cell line
chr5	24415437	24415437	AG	A	ENSMUST00000196296.1	5	ENSMUSG00000038276	FS	Q/X	195	Asic3	ENSMUST00000196296.1:c.589del	ENSMUSP00000143083.1:p.Ala197GlnfsTer77	H-2-Db	9	59	0	TARRNPLPL	NA	SMM	164.672	NA	NA	63	0.143	227.965	NA	NA	NA	391.53	NA	273.3	NA	164.6720909	NA	182.6291089	M6	-1.157142857	-1.157142857	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;Vardict	3	0.141	63	1	1	1	5qA3	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.756431347	sgMsh2	cell line
chr5	49987499	49987499	C	T	ENSMUST00000030971.6	1	ENSMUSG00000029090	missense	S/N	584	Adgra3	ENSMUST00000030971.6:c.1751G>A	ENSMUSP00000030971.5:p.Ser584Asn	H-2-Kb	8	9	3	VSNTFSSL	VSSTFSSL	NetMHC	6.05	7.18	1.187	37	0.216	9.733	17.653	1.814	7.18	6.05	12.2	12.2	23.10681036	9.262751223	24.70244836	10.20328459	M6	0	0.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.228	37	74	15	0.202702703	5qB3	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr5	35087007	35087007	T	C	ENSMUST00000050709.3	1	ENSMUSG00000044716	missense	S/P	532	Dok7	ENSMUST00000050709.3:c.1594T>C	ENSMUSP00000059538.3:p.Ser532Pro	H-2-Kb	8	9	3	STPRYAQI	STSRYAQI	NetMHC	12.58	63.7	5.064	70	0.243	64.57	177.694	2.752	63.7	12.58	195.8	62.5	194.4195797	72.56713881	160.9681675	66.64076901	M6	-0.757142857	-0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.234	70	0	0	NA	5qB2	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr5	20886561	20886561	A	G	ENSMUST00000115259.2	1	ENSMUSG00000045435	missense	Y/C	108	Tmem60	ENSMUST00000115259.2:c.323A>G	ENSMUSP00000110914.2:p.Tyr108Cys	H-2-Kb	8	9	3	LSCVFIPL	LSYVFIPL	SMMPMBEC	18.739	1.883	0.1	211	0.047	26.189	2.268	0.087	2.35	26.63	3.4	62.9	2.186452264	25.74779247	1.882521739	18.73872337	M6	2.2	2.2	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.052	211	87	9	0.103448276	5qA3	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.278967589	sgMsh2	cell line
chr4	155966486	155966486	T	C	ENSMUST00000024338.4	1	ENSMUSG00000023571	missense	M/T	304	C1qtnf12	ENSMUST00000024338.4:c.911T>C	ENSMUSP00000024338.4:p.Met304Thr	H-2-Kb	8	12	6	SSFSGTLL	SSFSGMLL	NetMHCpan	66.9	50.3	0.752	159	0.031	86.988	70.723	0.813	34.09	71	50.3	66.9	95.22259222	121.8260042	91.14650073	102.9769442	M6	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.041	159	2	0	0	4qE2	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.219955214	sgMsh2	cell line
chr5	72136781	72136781	T	C	ENSMUST00000031122.8	1	ENSMUSG00000029212	missense	V/A	466	Gabrb1	ENSMUST00000031122.8:c.1397T>C	ENSMUSP00000031122.7:p.Val466Ala	H-2-Kb	8	13	1	AVYWLYYV	VVYWLYYV	NetMHC	91.79	21.25	0.232	125	0.232	165.905	50.397	0.304	21.25	91.79	59.6	164.8	44.33431473	167.0090478	56.4598864	193.5263029	M6	1.057142857	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.212	125	0	0	NA	5qC3.2	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr5	16359028	16359028	T	C	ENSMUST00000039370.13	1	ENSMUSG00000040118	missense	V/A	903	Cacna2d1	ENSMUST00000039370.13:c.2708T>C	ENSMUSP00000049457.7:p.Val903Ala	H-2-Kb	8	4	8	KSYDYQSA	KSYDYQSV	NetMHCpan	154.7	15.4	0.1	90	0.044	204.33	27.778	0.136	12.68	168.92	15.4	154.7	40.15503419	239.7397234	51.49202839	247.5939338	M6	-1.342857143	-1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.05	90	3	0	0	5qA3	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.268238066	sgMsh2	cell line
chr5	72136781	72136781	T	C	ENSMUST00000031122.8	1	ENSMUSG00000029212	missense	V/A	466	Gabrb1	ENSMUST00000031122.8:c.1397T>C	ENSMUSP00000031122.7:p.Val466Ala	H-2-Kb	8	6	8	ITFSLFNA	ITFSLFNV	SMMPMBEC	129.045	26.837	0.208	125	0.232	166.635	25.674	0.154	25.66	325.35	23.2	179.9	25.68857419	153.3698525	26.83737286	129.0446488	M6	0.885714286	1.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.212	125	0	0	NA	5qC3.2	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr5	34848948	34848948	T	A	ENSMUST00000080036.2	1	ENSMUSG00000029104	missense	H/Q	1400	Htt	ENSMUST00000080036.2:c.4200T>A	ENSMUSP00000078945.2:p.His1400Gln	H-2-Kb	8	9	3	AIQNHIRL	AIHNHIRL	SMM	233.206	203.582	0.873	213	0.038	335.761	210.611	0.627	187.86	352.56	450.7	1017.2	203.5822922	233.2061504	217.6406428	318.9627742	M6	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.046	213	28	1	0.035714286	5qB2	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.246779021	sgMsh2	cell line
chr5	53700084	53700084	A	G	ENSMUST00000031093.4	1	ENSMUSG00000029193	missense	V/A	328	Cckar	ENSMUST00000031093.4:c.983T>C	ENSMUSP00000031093.3:p.Val328Ala	H-2-Kb	8	8	4	VIVALFFL	VIVVLFFL	SMM	123.806	118.779	0.959	98	0.153	250.341	189.98	0.759	254.72	356.15	789.3	353.2	118.7790917	123.8055176	125.2391179	147.4823333	M6	3.385714286	3.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.156	98	0	0	NA	5qC1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.836902767	sgMsh2	cell line
chr5	16618861	16618861	C	CA	ENSMUST00000199581.4	1	ENSMUSG00000028864	FS	-/X	685-686	Hgf	ENSMUST00000199581.4:c.2059dup	ENSMUSP00000143424.1:p.Met687AsnfsTer59	H-2-Kb	8	31	0	SSWYFCSS	NA	SMM	132.966	NA	NA	184	0.266	211.846	NA	NA	NA	521.79	NA	264.2	NA	132.965815	NA	159.4924025	M6	0.1	0.1	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.265	184	0	0	NA	5qA3	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr5	44541790	44541790	T	C	ENSMUST00000070748.9	1	ENSMUSG00000039706	missense	Y/C	102	Ldb2	ENSMUST00000070748.9:c.305A>G	ENSMUSP00000067737.5:p.Tyr102Cys	H-2-Kb	8	6	6	VTDLYCIL	VTDLYYIL	SMM	140.197	103.214	0.736	134	0.239	259.244	165.93	0.64	223.19	600.89	199.2	346.8	103.2143305	140.197413	132.6600022	171.6880231	M6	1.3	1.357142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.237	134	0	0	NA	5qB3	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr5	53642073	53642073	GA	G	ENSMUST00000037618.12	1	ENSMUSG00000039191	FS	K/X	108	Rbpj	ENSMUST00000037618.12:c.330del	ENSMUSP00000040694.6:p.Glu111SerfsTer21	H-2-Kb	8	24	0	KSLNPVRL	NA	SMM	339.422	NA	NA	317	0.167	495.706	NA	NA	NA	602.6	NA	1460.6	NA	339.4220093	NA	388.8123042	M6	0.2	0.2	FALSE	FALSE	FALSE	0	FALSE	1	Strelka2;Vardict	2	0.1672	317	45	4	0.088888889	5qC1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.896988093	sgMsh2	cell line
chr5	72136781	72136781	T	C	ENSMUST00000031122.8	1	ENSMUSG00000029212	missense	V/A	466	Gabrb1	ENSMUST00000031122.8:c.1397T>C	ENSMUSP00000031122.7:p.Val466Ala	H-2-Kb	9	6	8	ITFSLFNAV	ITFSLFNVV	NetMHCpan	22.2	42.2	1.901	125	0.232	58.568	114.168	1.949	100.66	26.54	42.2	22.2	127.6762152	90.59620379	139.7172407	112.784651	M6	1.585714286	1.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.212	125	0	0	NA	5qC3.2	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr5	35087007	35087007	T	C	ENSMUST00000050709.3	1	ENSMUSG00000044716	missense	S/P	532	Dok7	ENSMUST00000050709.3:c.1594T>C	ENSMUSP00000059538.3:p.Ser532Pro	H-2-Kb	9	8	4	ASTPRYAQI	ASTSRYAQI	NetMHC	109.33	62.84	0.575	70	0.243	205.599	158.66	0.772	62.84	109.33	229.2	215.2	179.5188262	308.3968972	137.8002483	195.99726	M6	-0.757142857	-0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.234	70	0	0	NA	5qB2	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr5	16618861	16618861	C	CA	ENSMUST00000199581.4	1	ENSMUSG00000028864	FS	-/X	685-686	Hgf	ENSMUST00000199581.4:c.2059dup	ENSMUSP00000143424.1:p.Met687AsnfsTer59	H-2-Kb	9	32	0	SWYFCSSSI	NA	SMM	110.69	NA	NA	184	0.266	162.07	NA	NA	NA	127.69	NA	222.7	NA	110.690411	NA	196.4490803	M6	0.871428571	0.871428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.265	184	0	0	NA	5qA3	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr5	3818616	3818616	A	G	ENSMUST00000080085.8	1	ENSMUSG00000000600	missense	H/R	360	Krit1	ENSMUST00000080085.8:c.1079A>G	ENSMUSP00000078985.4:p.His360Arg	H-2-Kb	9	7	5	SSPLRFAAG	SSPLHFAAG	NetMHC	218.11	205.07	0.94	101	0.178	431.596	459.66	1.065	205.07	218.11	544.5	672.9	475.4556362	459.3143352	443.8640791	403.8778168	M6	0.528571429	0.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.158	101	47	7	0.14893617	5qA1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.847632289	sgMsh2	cell line
chr5	16618861	16618861	C	CA	ENSMUST00000199581.4	1	ENSMUSG00000028864	FS	-/X	685-686	Hgf	ENSMUST00000199581.4:c.2059dup	ENSMUSP00000143424.1:p.Met687AsnfsTer59	H-2-Kb	9	31	0	SSWYFCSSS	NA	SMM	211.402	NA	NA	184	0.266	263.69	NA	NA	NA	254.38	NA	273	NA	211.4024421	NA	341.3893746	M6	0.1	0.1	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.265	184	0	0	NA	5qA3	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr5	16359028	16359028	T	C	ENSMUST00000039370.13	1	ENSMUSG00000040118	missense	V/A	903	Cacna2d1	ENSMUST00000039370.13:c.2708T>C	ENSMUSP00000049457.7:p.Val903Ala	H-2-Kb	9	4	8	KSYDYQSAC	KSYDYQSVC	NetMHCpan	276.2	497	1.799	90	0.044	416.065	787.162	1.892	922.32	305.81	497	276.2	924.9324152	656.3114787	652.0036095	526.3201534	M6	-0.871428571	-0.871428571	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.05	90	3	0	0	5qA3	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.268238066	sgMsh2	cell line
chr5	53700084	53700084	A	G	ENSMUST00000031093.4	1	ENSMUSG00000029193	missense	V/A	328	Cckar	ENSMUST00000031093.4:c.983T>C	ENSMUSP00000031093.3:p.Val328Ala	H-2-Kb	9	10	2	VALFFLCWM	VVLFFLCWM	SMM	75.008	84.355	1.125	98	0.153	212.356	265.535	1.25	414.59	323.96	871.7	448.6	84.35483883	75.00841699	116.4796347	100.7511472	M6	2.385714286	3.1	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.156	98	0	0	NA	5qC1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.836902767	sgMsh2	cell line
chr5	77345396	77345396	T	C	ENSMUST00000031167.5	1	ENSMUSG00000029250	missense	M/T	1075	Polr2b	ENSMUST00000031167.5:c.3224T>C	ENSMUSP00000031167.5:p.Met1075Thr	H-2-Db	9	3	9	IQILNRQPT	IQILNRQPM	NetMHC	257.87	9.72	0.038	167	0.246	332.261	20.79	0.063	9.72	257.87	15.3	681.9	26.2796756	384.2554182	30.3088878	280.265732	M6	-0.785714286	-0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.242	167	148	33	0.222972973	5qC3.3	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr5	105015021	105015021	GT	G	ENSMUST00000031235.12	5	ENSMUSG00000034438	FS	K/X	502	Gbp8	ENSMUST00000031235.12:c.1506del	ENSMUSP00000031235.6:p.Lys502AsnfsTer33	H-2-Kb	8	24	0	ASFIFSPI	NA	NetMHC	3.58	NA	NA	120	0.258	6.633	NA	NA	NA	3.58	NA	3.7	NA	11.08510982	NA	9.566211974	M6	1.628571429	1.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.287	120	0	0	NA	5qE5	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr5	122334415	122334415	G	C	ENSMUST00000049009.6	1	ENSMUSG00000038569	missense	L/V	228	Rad9b	ENSMUST00000049009.6:c.682C>G	ENSMUSP00000036177.6:p.Leu228Val	H-2-Kb	8	4	8	ITFCFKEV	ITFCFKEL	NetMHCpan	16.5	4.9	0.297	183	0.158	33.639	9.744	0.29	7.88	25.23	4.9	16.5	12.04314735	43.02689433	11.60753495	42.04748265	M6	0.6	0.642857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.159	183	3	1	0.333333333	5qF	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.852997051	sgMsh2	cell line
chr5	86538011	86538011	T	C	ENSMUST00000116553.8	1	ENSMUSG00000048764	missense	M/V	166	Tmprss11f	ENSMUST00000116553.8:c.496A>G	ENSMUSP00000112252.2:p.Met166Val	H-2-Kb	8	9	3	ISVPSFSL	ISMPSFSL	NetMHCpan	102.9	36.1	0.351	138	0.036	207.483	135.317	0.652	55.98	137.8	36.1	102.9	214.6545013	277.1660292	219.1492557	335.5366776	M6	0.971428571	1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.04	138	0	0	NA	5qE1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.214590453	sgMsh2	cell line
chr5	128602175	128602175	T	G	ENSMUST00000117102.3	NA	ENSMUSG00000081683	missense	F/V	320	Fzd10	ENSMUST00000117102.3:c.958T>G	ENSMUSP00000114114.2:p.Phe320Val	H-2-Kb	8	6	6	LVLYYVGM	LVLYYFGM	NetMHCpan	67.9	82.6	1.216	124	0.274	231.943	180.72	0.779	115.55	159.98	82.6	67.9	312.4208431	400.6268017	245.8895091	303.9065077	M6	1.585714286	1.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.28	124	0	0	NA	5qG1.3	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr5	124646720	124646720	G	C	ENSMUST00000037865.12	1	ENSMUSG00000038023	missense	M/I	314	Atp6v0a2	ENSMUST00000037865.12:c.942G>C	ENSMUSP00000039737.8:p.Met314Ile	H-2-Kb	8	4	8	AIYHMLNI	AIYHMLNM	NetMHCpan	91.3	50.6	0.554	56	0.232	200.452	111.002	0.554	73.5	173.53	50.6	91.3	148.504632	240.2923806	155.1457917	227.3735801	M6	0.957142857	0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.255	56	63	11	0.174603175	5qF	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr5	122559719	122559719	T	C	ENSMUST00000031426.13	1	ENSMUSG00000029469	missense	H/R	565	Ift81	ENSMUST00000031426.13:c.1694A>G	ENSMUSP00000031426.7:p.His565Arg	H-2-Kb	8	8	4	SKYRYTNC	SKYHYTNC	SMM	88.867	165.859	1.866	215	0.116	164.978	520.745	3.156	824.85	208.13	921.7	665.9	165.8593656	88.86689373	216.6406749	121.8260042	M6	-1.814285714	-1.814285714	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.132	215	41	14	0.341463415	5qF	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.708148495	sgMsh2	cell line
chr5	123029094	123029094	A	G	ENSMUST00000121652.7	1	ENSMUSG00000049686	missense	Q/R	110	Orai1	ENSMUST00000121652.7:c.329A>G	ENSMUSP00000113097.1:p.Gln110Arg	H-2-Kb	8	5	7	VAMVEVRL	VAMVEVQL	NetMHCpan	161.3	312.1	1.935	92	0.217	224.693	395.574	1.761	446.21	236.7	312.1	161.3	660.2980276	382.5956254	344.9371732	212.686537	M6	1.128571429	1.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.21	92	35	9	0.257142857	5qF	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr5	114446235	114446235	A	G	ENSMUST00000112239.8	1	ENSMUSG00000041939	missense	N/S	52	Mvk	ENSMUST00000112239.8:c.155A>G	ENSMUSP00000107858.2:p.Asn52Ser	H-2-Kb	8	8	4	VSVSLPNI	VSVNLPNI	NetMHC	241.52	285.96	1.184	111	0.234	297.918	341.33	1.146	285.96	241.52	319.8	246.1	362.8607551	351.3500341	386.1357391	349.7357273	M6	0.828571429	0.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.255	111	53	12	0.226415094	5qF	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr5	115127330	115127330	A	G	ENSMUST00000060798.5	1	ENSMUSG00000046562	missense	F/L	148	Unc119b	ENSMUST00000060798.5:c.442T>C	ENSMUSP00000055475.5:p.Phe148Leu	H-2-Kb	8	5	7	YQFTPALL	YQFTPAFL	SMM	296.306	196.671	0.664	213	0.169	335.523	309.714	0.923	532.95	346.9	393.1	369.1	196.6708524	296.3056959	226.3288934	324.1455024	M6	0.914285714	0.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.178	213	58	11	0.189655172	5qF	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.954927516	sgMsh2	cell line
chr5	123758488	123758488	A	G	ENSMUST00000031366.11	1	ENSMUSG00000029414	missense	N/D	138	Kntc1	ENSMUST00000031366.11:c.412A>G	ENSMUSP00000031366.7:p.Asn138Asp	H-2-Kb	8	5	7	SQRTYRDL	SQRTYRNL	SMM	239.74	37.217	0.155	147	0.061	352.064	42.914	0.122	25.66	412.56	218.3	1756.2	37.21688324	239.7397234	48.61160944	291.5680954	M6	-2.028571429	-2.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.06	147	16	5	0.3125	5qF	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.321885679	sgMsh2	cell line
chr5	101849358	101849358	T	C	ENSMUST00000053177.13	1	ENSMUSG00000043940	missense	I/V	3134	Wdfy3	ENSMUST00000053177.13:c.9400A>G	ENSMUSP00000052607.7:p.Ile3134Val	H-2-Kb	8	11	1	VIWDLNKL	IIWDLNKL	NetMHCpan	215.6	262.8	1.219	80	0.237	248.459	264.97	1.066	452.92	420.56	262.8	215.6	267.1406633	250.4609364	240.2923806	246.456343	M6	0.042857143	0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.219	80	33	6	0.181818182	5qE4	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr5	97938118	97938118	A	G	ENSMUST00000031281.13	1	ENSMUSG00000029338	missense	V/A	465	Antxr2	ENSMUST00000031281.13:c.1394T>C	ENSMUSP00000031281.9:p.Val465Ala	H-2-Kb	8	6	6	KQYDRASL	KQYDRVSL	NetMHCpan	244.9	441.5	1.803	178	0.056	342.196	988.056	2.887	1221.63	468.04	441.5	244.9	1001.705365	346.5293309	974.4061133	337.8625068	M6	-1.142857143	-1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.055	178	153	13	0.08496732	5qE3	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.295061873	sgMsh2	cell line
chr5	127650704	127650704	T	C	ENSMUST00000118139.2	1	ENSMUSG00000049971	missense	V/A	80	Glt1d1	ENSMUST00000118139.2:c.239T>C	ENSMUSP00000113864.1:p.Val80Ala	H-2-Kb	8	5	7	HSIPFGAI	HSIPFGVI	NetMHCpan	293.7	660.3	2.248	122	0.164	460.739	1062.469	2.306	2797.35	496.24	660.3	293.7	1166.11129	495.1536674	958.826437	426.324214	M6	1.542857143	1.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.177	122	0	0	NA	5qG1.2	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.949562754	sgMsh2	cell line
chr5	128602175	128602175	T	G	ENSMUST00000117102.3	NA	ENSMUSG00000081683	missense	F/V	320	Fzd10	ENSMUST00000117102.3:c.958T>G	ENSMUSP00000114114.2:p.Phe320Val	H-2-Kb	8	4	8	VFLVLYYV	VFLVLYYF	SMM	220.161	1001.705	4.55	124	0.274	469.155	1030.407	2.196	1056.8	648.75	5057.8	2653.3	1001.705365	220.1608027	1004.014535	289.5609548	M6	2.314285714	2.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.28	124	0	0	NA	5qG1.3	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr5	87694728	87694728	C	T	ENSMUST00000197422.4	1	ENSMUSG00000063157	missense	A/T	147	Csn2	ENSMUST00000197422.4:c.439G>A	ENSMUSP00000143341.1:p.Ala147Thr	H-2-Kb	8	9	3	SLTSLANL	SLASLANL	SMM	381.716	341.775	0.895	186	0.048	487.6	375.638	0.77	720.32	664.91	348.8	569	341.7747702	381.7156799	402.476011	406.2000757	M6	1.171428571	1.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.053	186	0	0	NA	5qE1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.28433235	sgMsh2	cell line
chr5	115127330	115127330	A	G	ENSMUST00000060798.5	1	ENSMUSG00000046562	missense	F/L	148	Unc119b	ENSMUST00000060798.5:c.442T>C	ENSMUSP00000055475.5:p.Phe148Leu	H-2-Kb	9	3	9	VRYQFTPAL	VRYQFTPAF	NetMHC	25.89	145.31	5.613	213	0.169	64.362	149.784	2.327	145.31	25.89	263.6	60	115.9070894	68.72424857	154.2588183	89.17641311	M6	0.185714286	0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.178	213	58	11	0.189655172	5qF	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.954927516	sgMsh2	cell line
chr5	108797917	108797917	T	A	ENSMUST00000172140.2	5	ENSMUSG00000090961	missense	K/M	608	Vmn2r8	ENSMUST00000172140.2:c.1823A>T	ENSMUSP00000126953.1:p.Lys608Met	H-2-Kb	9	5	7	VTFVKYMDT	VTFVKYKDT	NetMHC	118.73	352.78	2.971	474	0.2	133.741	296.916	2.22	352.78	118.73	835.9	251.6	241.0515897	148.2893631	183.7595844	119.1927939	M6	-0.071428571	1.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.207	474	0	0	NA	5qF	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr5	87887345	87887345	C	T	ENSMUST00000129757.8	5	ENSMUSG00000009580	missense	P/L	56	Odam	ENSMUST00000129757.8:c.167C>T	ENSMUSP00000117898.2:p.Pro56Leu	H-2-Kb	9	7	5	SWIPLFPGF	SWIPPFPGF	SMM	167.151	225.481	1.349	41	0.268	248.263	377.632	1.521	237.36	193.66	1017.7	578.5	225.4810248	167.1513929	517.9048762	302.8656361	M6	1.471428571	1.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	41	0	0	NA	5qE1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr5	87887345	87887345	C	T	ENSMUST00000129757.8	5	ENSMUSG00000009580	missense	P/L	56	Odam	ENSMUST00000129757.8:c.167C>T	ENSMUSP00000117898.2:p.Pro56Leu	H-2-Kb	9	3	9	GAFNSWIPL	GAFNSWIPP	SMMPMBEC	199.182	1466.392	7.362	41	0.268	221.206	6480.976	29.298	11495.56	212.21	12317	257.9	1061.964502	230.202481	1466.391721	199.1819593	M6	0.614285714	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	41	0	0	NA	5qE1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr5	101944090	101944090	T	C	ENSMUST00000053177.13	1	ENSMUSG00000043940	missense	K/R	461	Wdfy3	ENSMUST00000053177.13:c.1382A>G	ENSMUSP00000052607.7:p.Lys461Arg	H-2-Kb	9	5	7	LNYIPCREL	LNYIPCKEL	NetMHCpan	162.8	323.2	1.985	181	0.022	262.115	363.046	1.385	484.84	218.66	323.2	162.8	341.2793414	305.5694975	384.8132346	375.1889162	M6	-0.014285714	-0.014285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.03	181	55	3	0.054545455	5qE5	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.16094284	sgMsh2	cell line
chr5	100783064	100783064	T	C	ENSMUST00000044684.13	1	ENSMUSG00000035266	missense	T/A	607	Helq	ENSMUST00000044684.13:c.1819A>G	ENSMUSP00000041599.7:p.Thr607Ala	H-2-Kb	9	3	9	IAYHHSGLA	IAYHHSGLT	NetMHC	247.31	291.01	1.177	77	0.26	252.751	227.555	0.9	291.01	247.31	501.5	312.5	164.1005362	254.7475407	163.0234201	250.7552301	M6	-0.471428571	-0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.267	77	13	0	0	5qE4	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr5	87980456	87980456	C	T	ENSMUST00000008051.4	1	ENSMUSG00000007907	missense	A/V	322	Cabs1	ENSMUST00000008051.4:c.965C>T	ENSMUSP00000008051.3:p.Ala322Val	H-2-Kb	9	3	9	SRYDFIVTV	SRYDFIVTA	NetMHC	247.69	1919.8	7.751	298	0.228	296.64	1365.153	4.602	1919.8	247.69	1245.9	252	1361.789559	341.2793414	1368.51638	396.5062159	M6	1.457142857	1.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.214	298	0	0	NA	5qE1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr5	124646720	124646720	G	C	ENSMUST00000037865.12	1	ENSMUSG00000038023	missense	M/I	314	Atp6v0a2	ENSMUST00000037865.12:c.942G>C	ENSMUSP00000039737.8:p.Met314Ile	H-2-Kb	9	3	9	KAIYHMLNI	KAIYHMLNM	NetMHCpan	142.3	108.5	0.762	56	0.232	457.411	270.709	0.592	183.23	299.29	108.5	142.3	358.1871488	676.2542383	360.7862685	615.5310989	M6	0.957142857	0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.255	56	63	11	0.174603175	5qF	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr5	110303958	110303958	A	G	ENSMUST00000007296.11	1	ENSMUSG00000007080	missense	T/A	889	Pole	ENSMUST00000007296.11:c.2665A>G	ENSMUSP00000007296.5:p.Thr889Ala	H-2-Kb	9	10	2	LAISYPGAM	LTISYPGAM	NetMHC	321.94	443.75	1.378	152	0.178	444.326	551.545	1.241	443.75	321.94	412.2	409.9	659.3408748	478.7513372	692.2293355	536.1051757	M6	0.585714286	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.179	152	24	5	0.208333333	5qF	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.960292277	sgMsh2	cell line
chr5	105015021	105015021	GT	G	ENSMUST00000031235.12	5	ENSMUSG00000034438	FS	K/X	502	Gbp8	ENSMUST00000031235.12:c.1506del	ENSMUSP00000031235.6:p.Lys502AsnfsTer33	H-2-Kb	9	23	0	VASFIFSPI	NA	NetMHCpan	98.9	NA	NA	120	0.258	387.939	NA	NA	NA	383.91	NA	98.9	NA	443.7210173	NA	391.9674468	M6	1.628571429	2.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.287	120	0	0	NA	5qE5	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr5	122559719	122559719	T	C	ENSMUST00000031426.13	1	ENSMUSG00000029469	missense	H/R	565	Ift81	ENSMUST00000031426.13:c.1694A>G	ENSMUSP00000031426.7:p.His565Arg	H-2-Kb	9	8	4	SKYRYTNCM	SKYHYTNCM	SMM	345.231	307.688	0.891	215	0.116	387.24	525.106	1.356	727.92	396.69	751.5	482.5	307.6876041	345.2311699	322.2923521	377.7896015	M6	-0.985714286	-0.985714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.132	215	41	14	0.341463415	5qF	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.708148495	sgMsh2	cell line
chr5	128602175	128602175	T	G	ENSMUST00000117102.3	NA	ENSMUSG00000081683	missense	F/V	320	Fzd10	ENSMUST00000117102.3:c.958T>G	ENSMUSP00000114114.2:p.Phe320Val	H-2-Kb	9	5	7	FLVLYYVGM	FLVLYYFGM	SMMPMBEC	298.023	330.56	1.109	124	0.274	376.102	368.465	0.98	406.37	422.51	1212.2	922.2	299.3022626	329.6932077	330.5597718	298.0231495	M6	1.585714286	2.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.28	124	0	0	NA	5qG1.3	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr5	97938118	97938118	A	G	ENSMUST00000031281.13	1	ENSMUSG00000029338	missense	V/A	465	Antxr2	ENSMUST00000031281.13:c.1394T>C	ENSMUSP00000031281.9:p.Val465Ala	H-2-Kb	9	6	6	KQYDRASLM	KQYDRVSLM	SMM	316.308	293.839	0.929	178	0.056	367.205	308.437	0.84	396.11	566.31	270.2	317.3	293.8393807	316.3078717	323.0353127	417.1094219	M6	-0.371428571	-0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.055	178	153	13	0.08496732	5qE3	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.295061873	sgMsh2	cell line
chr5	87587646	87587646	C	T	ENSMUST00000031201.8	1	ENSMUSG00000029272	missense	V/M	58	Sult1e1	ENSMUST00000031201.8:c.172G>A	ENSMUSP00000031201.7:p.Val58Met	H-2-Kb	9	10	2	VMYMIYKEG	VVYMIYKEG	SMMPMBEC	147.996	300.781	2.032	176	0.153	482.069	832.844	1.728	2244.42	1489.03	1307.5	798.9	358.1871488	165.2380267	300.7807237	147.9960077	M6	-0.571428571	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.166	176	0	0	NA	5qE1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.89055038	sgMsh2	cell line
chr6	13193189	13193189	T	C	ENSMUST00000054530.6	1	ENSMUSG00000079679	missense	T/A	384	Vwde	ENSMUST00000054530.6:c.1150A>G	ENSMUSP00000058110.5:p.Thr384Ala	H-2-Kb	8	6	6	AVLYYAAV	AVLYYTAV	NetMHC	18.5	70.64	3.818	103	0.068	51.667	133.063	2.575	70.64	18.5	72.6	37	198.0341096	69.30107956	193.5263029	66.33458249	M6	1.885714286	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.074	103	0	0	NA	6qA1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.396992338	sgMsh2	cell line
chr6	5496078	5496078	G	C	ENSMUST00000019721.6	1	ENSMUSG00000019577	missense	R/G	29	Pdk4	ENSMUST00000019721.6:c.85C>G	ENSMUSP00000019721.4:p.Arg29Gly	H-2-Kb	8	10	2	SGYSPSPL	SRYSPSPL	NetMHC	24.03	483.67	20.128	29	0.207	60.573	403.535	6.662	483.67	24.03	1222.2	87.8	257.4779247	54.04306853	323.3999884	67.10270075	M6	-0.385714286	-0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.259	29	0	0	NA	6qA1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr6	8013113	8013113	AT	A	ENSMUST00000115537.1	1	ENSMUSG00000068794	FS	I/X	980	Col28a1	ENSMUST00000115537.1:c.2938del	ENSMUSP00000111199.1:p.Ile980PhefsTer59	H-2-Kb	8	39	0	SAYPLQSL	NA	NetMHC	32.49	NA	NA	90	0.244	67.366	NA	NA	NA	32.49	NA	34.1	NA	100.6329027	NA	158.0301673	M6	0.314285714	0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.242	90	0	0	NA	6qA1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr6	38818458	38818458	T	C	ENSMUST00000161779.7	1	ENSMUSG00000061436	missense	K/R	292	Hipk2	ENSMUST00000161779.7:c.875A>G	ENSMUSP00000124133.1:p.Lys292Arg	H-2-Kb	8	8	4	KQNRFSPL	KQNKFSPL	NetMHC	61.41	154.24	2.512	207	0.193	64.826	136.646	2.108	154.24	61.41	353.3	182.8	116.611129	64.37837347	119.0529058	65.27396586	M6	-1.042857143	-1.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.204	207	120	23	0.191666667	6qB1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr6	7863979	7863979	GT	G	ENSMUST00000040159.5	1	ENSMUSG00000042460	FS	F/X	20	C1galt1	ENSMUST00000040159.5:c.65del	ENSMUSP00000047931.4:p.Leu22TyrfsTer6	H-2-Kb	8	7	7	SAIGFFYV	SAIGFFLC	NetMHCpan	57.3	1444.2	25.204	99	0.202	103.388	1418.262	13.718	3373.28	68.82	1444.2	57.3	1136.946424	137.9558114	1392.323008	151.6142424	M6	2.057142857	2.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.202	99	123	12	0.097560976	6qA1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr6	38982203	38982203	T	C	ENSMUST00000003017.12	1	ENSMUSG00000029925	missense	F/L	107	Tbxas1	ENSMUST00000003017.12:c.319T>C	ENSMUSP00000003017.6:p.Phe107Leu	H-2-Kb	8	4	8	LVENFSNL	LVENFSNF	SMMPMBEC	88.255	1108.511	12.56	252	0.234	120.109	1881.33	15.664	2784.54	111.47	1669.8	195.6	2092.859144	128.7478543	1108.510982	88.25513833	M6	-0.071428571	-0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.234	252	1	0	0	6qB1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr6	35270381	35270381	A	G	ENSMUST00000031868.4	1	ENSMUSG00000029843	missense	I/T	568	Slc13a4	ENSMUST00000031868.4:c.1703T>C	ENSMUSP00000031868.4:p.Ile568Thr	H-2-Kb	8	11	1	TVFSYGHC	IVFSYGHC	SMMPMBEC	126.398	45.787	0.362	128	0.039	145.752	48.403	0.332	38.66	171.24	51.8	148.7	51.01994663	142.8038776	45.7867692	126.3979412	M6	0.542857143	0.542857143	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.042	128	0	0	NA	6qB1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.225319976	sgMsh2	cell line
chr6	30815960	30815960	A	G	ENSMUST00000048774.12	1	ENSMUSG00000025607	missense	V/A	480	Copg2	ENSMUST00000048774.12:c.1439T>C	ENSMUSP00000038368.6:p.Val480Ala	H-2-Kb	8	6	6	FIFNRAVL	FIFNRVVL	SMM	138.912	401.55	2.891	119	0.034	159.887	404.813	2.532	524.31	178.28	359.2	181.6	401.5503419	138.9120754	408.0750101	141.4946437	M6	1.3	1.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.036	119	92	7	0.076086957	6qA3.3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.193131408	sgMsh2	cell line
chr5	142451467	142451467	A	G	ENSMUST00000072837.6	1	ENSMUSG00000056493	missense	N/S	346	Foxk1	ENSMUST00000072837.6:c.1037A>G	ENSMUSP00000072616.5:p.Asn346Ser	H-2-Kb	8	10	2	LSRYFIKV	LNRYFIKV	NetMHCpan	133.4	160.9	1.206	129	0.225	289.37	648.139	2.24	617.48	246.28	160.9	133.4	678.797134	367.0624846	693.0107956	332.4604589	M6	0.142857143	0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.209	129	72	12	0.166666667	5qG2	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr5	142472335	142472335	A	C	ENSMUST00000038699.12	1	ENSMUSG00000039623	missense	D/A	421	Ap5z1	ENSMUST00000038699.12:c.1262A>C	ENSMUSP00000041863.8:p.Asp421Ala	H-2-Kb	8	11	1	ASHFLSLL	DSHFLSLL	NetMHCpan	104.9	1978.2	18.858	91	0.154	316.048	1993.045	6.306	4351.3	259.07	1978.2	104.9	1818.61178	387.0258739	2007.890385	373.0267702	M6	1.342857143	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.171	91	21	3	0.142857143	5qG2	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.917374186	sgMsh2	cell line
chr6	18405230	18405230	T	C	ENSMUST00000090601.11	1	ENSMUSG00000000416	missense	Y/C	1090	Cttnbp2	ENSMUST00000090601.11:c.3269A>G	ENSMUSP00000088089.5:p.Tyr1090Cys	H-2-Kb	8	7	5	SSVTCASM	SSVTYASM	NetMHC	276.55	6.31	0.023	293	0.27	362.299	24.523	0.068	6.31	276.55	15.8	475.5	35.70590129	399.7053856	33.24604589	324.8927349	M6	1.157142857	1.157142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.271	293	1	0	0	6qA2	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr5	143373198	143373198	CA	C	ENSMUST00000110733.8	1	ENSMUSG00000010825	FS	A/X	252	Grid2ip	ENSMUST00000110733.8:c.757del	ENSMUSP00000106361.2:p.Thr253ProfsTer66	H-2-Kb	8	51	0	LSCLAARL	NA	SMMPMBEC	117.69	NA	NA	45	0.089	231.458	NA	NA	NA	310.25	NA	703.1	NA	152.6651821	NA	117.6901185	M6	1.2	1.2	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.087	45	0	0	NA	5qG2	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.466734235	sgMsh2	cell line
chr6	23969343	23969343	A	G	ENSMUST00000062463.3	NA	ENSMUSG00000043865	missense	S/P	240	Tas2r118	ENSMUST00000062463.3:c.718T>C	ENSMUSP00000053700.3:p.Ser240Pro	H-2-Kb	8	7	5	TFFTPYFL	TFFTSYFL	SMM	135.75	97.217	0.716	216	0.19	250.491	178.628	0.713	321.44	393.85	219.3	307.9	97.21650414	135.7500506	137.9558114	193.0812048	M6	1.228571429	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.194	216	0	0	NA	6qA3.1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr5	143373198	143373198	CA	C	ENSMUST00000110733.8	1	ENSMUSG00000010825	FS	A/X	252	Grid2ip	ENSMUST00000110733.8:c.757del	ENSMUSP00000106361.2:p.Thr253ProfsTer66	H-2-Kb	8	17	0	VALALGVL	NA	SMM	226.851	NA	NA	45	0.089	270.856	NA	NA	NA	422.56	NA	272.1	NA	226.8506354	NA	269.6124854	M6	2.685714286	2.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.087	45	0	0	NA	5qG2	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.466734235	sgMsh2	cell line
chr5	139813029	139813030	CT	GC	ENSMUST00000182839.1	3	ENSMUSG00000098140	missense	S/A	127	Gm26938	ENSMUST00000182839.1:c.379_380delinsGC	ENSMUSP00000138120.1:p.Ser127Ala	H-2-Kb	8	6	6	QLFLTAAL	QLFLTSAL	SMM	303.907	686.657	2.259	74	0.203	391.643	788.911	2.014	1092.12	468.7	830.1	487	686.6572344	303.9065077	747.7217263	314.5864409	M6	2.442857143	2.442857143	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.215	74	10	8	0.8	5qG2	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr6	38395159	38395159	A	G	ENSMUST00000162554.7	1	ENSMUSG00000056832	missense	N/S	228	Ttc26	ENSMUST00000162554.7:c.683A>G	ENSMUSP00000124369.1:p.Asn228Ser	H-2-Kb	8	8	4	KACSHFRL	KACNHFRL	SMMPMBEC	238.089	262.869	1.104	165	0.055	424.535	436.945	1.029	611.02	603.18	792.8	636.8	253.9451951	245.8895091	262.8693795	238.0893668	M6	0.342857143	0.342857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.051	165	12	0	0	6qB1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.273602828	sgMsh2	cell line
chr6	7863979	7863979	GT	G	ENSMUST00000040159.5	1	ENSMUSG00000042460	FS	F/X	20	C1galt1	ENSMUST00000040159.5:c.65del	ENSMUSP00000047931.4:p.Leu22TyrfsTer6	H-2-Kb	8	8	6	AIGFFYVL	AIGFFLCS	SMM	203.114	5620.048	27.669	99	0.202	208.426	10027.748	48.112	17473.53	611.87	13528.1	212.8	5620.047679	203.114066	6527.396586	204.0515979	M6	2.342857143	2.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.202	99	123	12	0.097560976	6qA1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr6	30815960	30815960	A	G	ENSMUST00000048774.12	1	ENSMUSG00000025607	missense	V/A	480	Copg2	ENSMUST00000048774.12:c.1439T>C	ENSMUSP00000038368.6:p.Val480Ala	H-2-Kb	8	4	8	IRFIFNRA	IRFIFNRV	SMMPMBEC	232.135	48.277	0.208	119	0.034	482.306	47.673	0.099	40.71	683.59	149.1	1240.7	47.06954498	281.0217928	48.27696948	232.1346655	M6	-0.085714286	0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.036	119	92	7	0.076086957	6qA3.3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.193131408	sgMsh2	cell line
chr5	142472335	142472335	A	C	ENSMUST00000038699.12	1	ENSMUSG00000039623	missense	D/A	421	Ap5z1	ENSMUST00000038699.12:c.1262A>C	ENSMUSP00000041863.8:p.Asp421Ala	H-2-Kb	8	10	2	FASHFLSL	FDSHFLSL	NetMHCpan	141.3	3750.8	26.545	91	0.154	478.389	3001.845	6.275	9890.2	763.7	3750.8	141.3	2252.890066	471.7805149	2176.406428	484.9980584	M6	1.057142857	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.171	91	21	3	0.142857143	5qG2	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.917374186	sgMsh2	cell line
chr6	23969343	23969343	A	G	ENSMUST00000062463.3	NA	ENSMUSG00000043865	missense	S/P	240	Tas2r118	ENSMUST00000062463.3:c.718T>C	ENSMUSP00000053700.3:p.Ser240Pro	H-2-Kb	8	4	8	TFFTFFTP	TFFTFFTS	SMM	179.366	98.116	0.547	216	0.19	380.318	326.834	0.859	1485.04	1110.12	507.2	549.9	98.11603738	179.3659491	146.4670721	210.7366151	M6	1.171428571	1.3	FALSE	FALSE	TRUE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.194	216	0	0	NA	6qA3.1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr6	7863979	7863979	GT	G	ENSMUST00000040159.5	1	ENSMUSG00000042460	FS	F/X	20	C1galt1	ENSMUST00000040159.5:c.65del	ENSMUSP00000047931.4:p.Leu22TyrfsTer6	H-2-Kb	8	9	5	IGFFYVLN	IGFFLCSQ	SMM	64.378	1562.212	24.266	99	0.202	272.735	2144.606	7.863	5387.49	2507.08	2727	472.4	1562.21211	64.37837347	714.0687051	73.07015019	M6	1.2	2.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.202	99	123	12	0.097560976	6qA1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr6	13193189	13193189	T	C	ENSMUST00000054530.6	1	ENSMUSG00000079679	missense	T/A	384	Vwde	ENSMUST00000054530.6:c.1150A>G	ENSMUSP00000058110.5:p.Thr384Ala	H-2-Kb	9	5	7	QAVLYYAAV	QAVLYYTAV	NetMHC	15.98	41.44	2.593	103	0.068	75.31	108.396	1.439	41.44	15.98	80.3	48.5	136.4928808	102.1198104	174.2809827	128.0117987	M6	1.885714286	1.885714286	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.074	103	0	0	NA	6qA1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.396992338	sgMsh2	cell line
chr6	7863979	7863979	GT	G	ENSMUST00000040159.5	1	ENSMUSG00000042460	FS	F/X	20	C1galt1	ENSMUST00000040159.5:c.65del	ENSMUSP00000047931.4:p.Leu22TyrfsTer6	H-2-Kb	9	7	7	SAIGFFYVL	SAIGFFLCS	NetMHCpan	16.9	2015.2	119.243	99	0.202	48.34	1212.348	25.08	3254.89	31.2	2015.2	16.9	271.0878168	65.48020042	409.4963169	79.84541822	M6	2.342857143	2.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.202	99	123	12	0.097560976	6qA1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr5	134597889	134597889	A	G	ENSMUST00000023867.7	1	ENSMUSG00000023104	missense	N/S	327	Rfc2	ENSMUST00000023867.7:c.980A>G	ENSMUSP00000023867.6:p.Asn327Ser	H-2-Kb	9	11	1	SSLLQMAGL	NSLLQMAGL	NetMHC	33.64	596.53	17.733	151	0.185	159.422	846.202	5.308	596.53	33.64	657	78.9	1035.404385	239.9440583	1127.84651	281.3519957	M6	1.6	1.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.188	151	60	15	0.25	5qG2	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr6	38982203	38982203	T	C	ENSMUST00000003017.12	1	ENSMUSG00000029925	missense	F/L	107	Tbxas1	ENSMUST00000003017.12:c.319T>C	ENSMUSP00000003017.6:p.Phe107Leu	H-2-Kb	9	3	9	VLVENFSNL	VLVENFSNF	NetMHC	52.53	313.76	5.973	252	0.234	222.433	495.007	2.225	313.76	52.53	154.3	53.8	676.2542383	400.9682638	676.4722721	391.0659467	M6	-0.071428571	1.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.234	252	1	0	0	6qB1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr5	145218650	145218650	G	A	ENSMUST00000085671.9	1	ENSMUSG00000055991	missense	S/N	377	Zkscan5	ENSMUST00000085671.9:c.1130G>A	ENSMUSP00000082814.3:p.Ser377Asn	H-2-Kb	9	10	2	KNYNQRVHL	KSYNQRVHL	NetMHCpan	86.9	87.5	1.007	85	0.141	186.781	162.349	0.869	69.85	121.15	87.5	86.9	237.1974414	252.4120012	237.82089	264.3930288	M6	-1.142857143	-1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.161	85	20	3	0.15	5qG2	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.863726573	sgMsh2	cell line
chr6	25753197	25753197	T	G	ENSMUST00000115330.7	1	ENSMUSG00000029676	missense	N/H	447	Pot1a	ENSMUST00000115330.7:c.1339A>C	ENSMUSP00000110986.1:p.Asn447His	H-2-Kb	9	6	6	VHFVKHNGI	VHFVKNNGI	NetMHC	140.7	1007.74	7.162	113	0.212	161.359	521.923	3.235	1007.74	140.7	693.7	180.5	322.9311952	152.7953016	350.1466697	169.9221522	M6	0.071428571	0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.224	113	39	6	0.153846154	6qA3.1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr5	131086045	131086045	A	G	ENSMUST00000086023.11	1	ENSMUSG00000034040	missense	Y/H	206	Galnt17	ENSMUST00000086023.11:c.616T>C	ENSMUSP00000083187.5:p.Tyr206His	H-2-Kb	9	11	1	HVHKRYPGL	YVHKRYPGL	SMM	154.565	98.653	0.638	76	0.197	178.483	95.626	0.536	57.72	173.63	92.6	394.1	98.65293264	154.5645878	108.4551052	183.3369491	M6	-1.585714286	-1.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.211	76	0	0	NA	5qG2	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr5	142472335	142472335	A	C	ENSMUST00000038699.12	1	ENSMUSG00000039623	missense	D/A	421	Ap5z1	ENSMUST00000038699.12:c.1262A>C	ENSMUSP00000041863.8:p.Asp421Ala	H-2-Kb	9	10	2	FASHFLSLL	FDSHFLSLL	NetMHC	190.64	4486.45	23.534	91	0.154	246.595	2634.748	10.685	4486.45	190.64	3910.4	200.7	1294.523683	292.4893114	1359.09558	371.7491635	M6	1.342857143	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.171	91	21	3	0.142857143	5qG2	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.917374186	sgMsh2	cell line
chr5	137758482	137758482	TG	T	ENSMUST00000110985.1	2	ENSMUSG00000029723	FS	L/X	57	Tsc22d4	ENSMUST00000110985.1:c.177del	ENSMUSP00000106613.1:p.Pro60GlnfsTer18	H-2-Kb	9	22	0	VGWTKAFSL	NA	NetMHCpan	103.3	NA	NA	67	0.328	321.493	NA	NA	NA	216.16	NA	103.3	NA	472.1826226	NA	426.8251484	M6	0.3	0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.312	67	1	1	1	5qG2	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr6	4756881	4756881	A	G	ENSMUST00000166678.1	5	ENSMUSG00000092035	missense	T/A	887	Peg10	ENSMUST00000166678.1:c.2659A>G	ENSMUSP00000127306.1:p.Thr887Ala	H-2-Kb	9	10	2	VAYNCRAPQ	VTYNCRAPQ	SMMPMBEC	155.686	201.025	1.291	109	0.312	256.873	337.294	1.313	416.89	326.63	3547.1	2769.3	257.6973782	187.1156015	201.0249672	155.6861575	M6	-1.442857143	0.142857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.316	109	7	3	0.428571429	6qA1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr6	23969343	23969343	A	G	ENSMUST00000062463.3	NA	ENSMUSG00000043865	missense	S/P	240	Tas2r118	ENSMUST00000062463.3:c.718T>C	ENSMUSP00000053700.3:p.Ser240Pro	H-2-Kb	9	4	8	TFFTFFTPY	TFFTFFTSY	SMM	58.359	101.651	1.742	216	0.19	196.971	288.699	1.466	465.39	328.44	714.6	450.5	101.6506125	58.35929005	112.0082469	65.50131214	M6	0.585714286	1.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.194	216	0	0	NA	6qA3.1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr5	142472335	142472335	A	C	ENSMUST00000038699.12	1	ENSMUSG00000039623	missense	D/A	421	Ap5z1	ENSMUST00000038699.12:c.1262A>C	ENSMUSP00000041863.8:p.Asp421Ala	H-2-Kb	9	9	3	LFASHFLSL	LFDSHFLSL	SMM	203.756	388.249	1.905	91	0.154	276.613	632.632	2.287	825.47	341.07	1414.4	280.8	388.2486909	203.7558094	439.7947088	272.4269072	M6	1.057142857	1.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.171	91	21	3	0.142857143	5qG2	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.917374186	sgMsh2	cell line
chr6	38818458	38818458	T	C	ENSMUST00000161779.7	1	ENSMUSG00000061436	missense	K/R	292	Hipk2	ENSMUST00000161779.7:c.875A>G	ENSMUSP00000124133.1:p.Lys292Arg	H-2-Kb	9	7	5	LKQNRFSPL	LKQNKFSPL	NetMHC	346.05	529.23	1.529	207	0.193	459.514	702.894	1.53	529.23	346.05	2230.7	1526.9	755.2835049	504.7891366	650.5040428	414.2380608	M6	-1.042857143	-1.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.204	207	120	23	0.191666667	6qB1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr5	134135628	134135628	T	C	ENSMUST00000016088.8	1	ENSMUSG00000015944	missense	F/L	143	Castor2	ENSMUST00000016088.8:c.427T>C	ENSMUSP00000016088.8:p.Phe143Leu	H-2-Kb	9	3	9	VTHTLSSEL	VTHTLSSEF	NetMHC	346.45	965.45	2.787	85	0.271	425.657	893.137	2.098	965.45	346.45	1373.9	488.8	635.4918716	376.7992242	820.8239126	474.5150595	M6	-0.2	0.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.257	85	11	2	0.181818182	5qG2	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr6	27363252	27363252	A	G	ENSMUST00000115323.7	1	ENSMUSG00000024211	missense	Y/H	755	Grm8	ENSMUST00000115323.7:c.2263T>C	ENSMUSP00000110978.1:p.Tyr755His	H-2-Kb	9	7	5	CSLGHSILL	CSLGYSILL	SMM	204.696	164.101	0.802	198	0.162	364.907	235.996	0.647	182.09	365.69	295.7	809.6	164.1005362	204.6963035	289.9011913	364.1245828	M6	1.642857143	1.642857143	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.173	198	0	0	NA	6qA3.1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.928103709	sgMsh2	cell line
chr5	137587025	137587025	T	C	ENSMUST00000198866.4	1	ENSMUSG00000029716	missense	L/P	773	Tfr2	ENSMUST00000198866.4:c.2318T>C	ENSMUSP00000142720.1:p.Leu773Pro	H-2-Kb	9	5	7	SRFRRQPAL	SRFRRQLAL	SMM	314.13	377.668	1.202	47	0.128	400.801	392.173	0.978	328.62	452.26	413.2	681.9	377.6678362	314.1304236	406.6773641	349.3413547	M6	-0.814285714	-0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.156	47	1	0	0	5qG2	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.836902767	sgMsh2	cell line
chr6	7863979	7863979	GT	G	ENSMUST00000040159.5	1	ENSMUSG00000042460	FS	F/X	20	C1galt1	ENSMUST00000040159.5:c.65del	ENSMUSP00000047931.4:p.Leu22TyrfsTer6	H-2-Kb	9	9	5	IGFFYVLNS	NA	NetMHCpan	145.4	NA	NA	99	0.202	455.994	NA	NA	NA	1161.5	NA	145.4	NA	439.6529586	NA	472.3348608	M6	1.142857143	2.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.202	99	123	12	0.097560976	6qA1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr6	8013113	8013113	AT	A	ENSMUST00000115537.1	1	ENSMUSG00000068794	FS	I/X	980	Col28a1	ENSMUST00000115537.1:c.2938del	ENSMUSP00000111199.1:p.Ile980PhefsTer59	H-2-Kb	10	18	0	ISFKFLDHHL	NA	NetMHCpan	12.2	NA	NA	90	0.244	327.464	NA	NA	NA	22.72	NA	12.2	NA	919.0306595	NA	632.2080187	M6	-0.485714286	0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.242	90	0	0	NA	6qA1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr6	43167977	43167977	G	T	ENSMUST00000205175.2	5	ENSMUSG00000071481	missense	K/N	306	Olfr437	ENSMUST00000205175.2:c.918G>T	ENSMUSP00000145490.1:p.Lys306Asn	H-2-Db	9	13	5	RALQNKRSV	RALQKKRSV	SMM	153.681	4995.972	32.509	73	0.137	206.324	11301.911	54.778	20445.39	223.6	16256.8	364.5	4995.972049	153.6809371	6347.021946	189.0470915	M6	-1.171428571	-1.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.134	73	0	0	NA	6qB2.1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.718878017	sgMsh2	cell line
chr6	41657965	41657965	T	C	ENSMUST00000031901.10	1	ENSMUSG00000036899	missense	T/A	526	Trpv5	ENSMUST00000031901.10:c.1576A>G	ENSMUSP00000031901.5:p.Thr526Ala	H-2-Db	9	10	2	SAFELFLTI	STFELFLTI	SMM	159.448	1036.621	6.501	191	0.147	215.606	1263.539	5.86	1725.03	319.56	1449.2	242.6	1036.620994	159.4483392	1077.878973	188.6122952	M6	1.928571429	1.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.154	191	0	0	NA	6qB2.1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.826173244	sgMsh2	cell line
chr6	87588585	87588585	G	T	ENSMUST00000204682.2	1	ENSMUSG00000049409	missense	L/I	93	Prokr1	ENSMUST00000204682.2:c.277C>A	ENSMUSP00000144999.1:p.Leu93Ile	H-2-Db	9	9	3	KKIRNLTNL	KKLRNLTNL	NetMHC	385.54	618.51	1.604	164	0.116	484.199	619.382	1.279	618.51	385.54	1829.6	1152.1	484.864067	433.1317299	620.2546088	535.2664216	M6	-0.014285714	-0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.12	164	1	0	0	6qD1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.643771359	sgMsh2	cell line
chr6	42286884	42286884	TG	T	ENSMUST00000031894.12	1	ENSMUSG00000029862	FS	G/X	40	Clcn1	ENSMUST00000031894.12:c.122del	ENSMUSP00000031894.6:p.Gly41AlafsTer70	H-2-Db	9	65	0	TTILNVKTV	NA	NetMHCpan	370.5	NA	NA	58	0.069	457.664	NA	NA	NA	742.55	NA	370.5	NA	495.0168702	NA	420.3102682	M6	1.228571429	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.087	58	0	0	NA	6qB2.1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.466734235	sgMsh2	cell line
chr6	41685379	41685379	GT	G	ENSMUST00000031900.5	1	ENSMUSG00000029867	FS	F/X	106	Llcfc1	ENSMUST00000031900.5:c.323del	ENSMUSP00000031900.5:p.Leu108TyrfsTer5	H-2-Kb	8	9	5	IMFFYERL	NA	NetMHCpan	4	NA	NA	126	0.183	5.968	NA	NA	NA	6.01	NA	4	NA	6.091720937	NA	5.92570463	M6	0.285714286	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1825	126	0	0	NA	6qB2.1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.979068942	sgMsh2	cell line
chr6	90179503	90179503	T	C	ENSMUST00000228665.1	NA	ENSMUSG00000060816	missense	I/T	263	Vmn1r52	ENSMUST00000228665.1:c.788T>C	ENSMUSP00000154275.1:p.Ile263Thr	H-2-Kb	8	5	7	ISYSRTTL	ISYSRTIL	NetMHC	11.01	22.38	2.033	378	0.206	21.895	51.901	2.37	22.38	11.01	20.6	11.3	81.42166892	35.54184757	84.86722465	32.48927349	M6	-0.714285714	-0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	378	0	0	NA	6qD1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	8	4	8	VLVSYTRL	VLVSYTRI	NetMHC	19.39	171.38	8.839	148	0.23	31.763	209.772	6.604	171.38	19.39	99.5	20.3	348.1288376	53.67103866	248.1646968	43.22549746	M6	0.642857143	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.236	148	0	0	NA	6qB2.1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr6	41059465	41059465	G	A	ENSMUST00000103265.4	NA	ENSMUSG00000107486	missense	C/Y	8	Trbv4	ENSMUST00000103265.4:c.23G>A	ENSMUSP00000144909.1:p.Cys8Tyr	H-2-Kb	8	6	3	LSYVAFCL	LSCVAFCL	NetMHC	38.35	2963.86	77.284	153	0.183	79.509	2202.556	27.702	2963.86	38.35	3210.1	53.4	1441.252256	122.3883275	1051.332282	105.6185011	M6	1.857142857	1.857142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.199	153	0	0	NA	6qB1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	8	6	6	VSYTRLLV	VSYTRILV	NetMHCpan	35.2	39.9	1.134	148	0.23	94.957	84.621	0.891	32.04	39.69	39.9	35.2	129.3421274	150.2242346	135.1263357	158.7596015	M6	0.642857143	0.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.236	148	0	0	NA	6qB2.1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr6	69016689	69016689	A	G	ENSMUST00000103341.3	NA	ENSMUSG00000076540	missense	S/P	73	Igkv4-80	ENSMUST00000103341.3:c.217T>C	ENSMUSP00000100142.3:p.Ser73Pro	H-2-Kb	8	6	6	LIYSTPNL	LIYSTSNL	NetMHC	42.91	22.03	0.513	436	0.195	70.274	48.507	0.69	22.03	42.91	39.9	54.5	61.9070344	88.86689373	57.11366107	86.04784535	M6	0.057142857	0.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.198	436	0	0	NA	6qC1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr6	89870010	89870010	TG	T	ENSMUST00000226983.1	NA	ENSMUSG00000068231	FS	Q/X	165	Vmn1r43	ENSMUST00000226983.1:c.493del	ENSMUSP00000153713.1:p.Gln165AsnfsTer12	H-2-Kb	8	10	2	SNSWYQSL	NA	NetMHCpan	54.4	NA	NA	353	0.028	119.666	NA	NA	NA	62.02	NA	54.4	NA	177.3127641	NA	266.5262568	M6	-1	-1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.028	353	0	0	NA	6qD1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.150213317	sgMsh2	cell line
chr6	114302629	114302629	A	G	ENSMUST00000032454.7	1	ENSMUSG00000030310	missense	K/R	123	Slc6a1	ENSMUST00000032454.7:c.368A>G	ENSMUSP00000032454.5:p.Lys123Arg	H-2-Kb	8	6	6	LAPMFRGV	LAPMFKGV	NetMHC	85.05	307.58	3.616	130	0.031	326.028	633.35	1.943	307.58	85.05	408.2	184.6	1126.522836	545.4312289	858.499408	467.4552051	M6	0.6	0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.039	130	0	0	NA	6qE3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.209225692	sgMsh2	cell line
chr6	41539131	41539131	G	T	ENSMUST00000192856.5	NA	ENSMUSG00000076490	missense	A/S	132	Trbc1	ENSMUST00000192856.5:c.393G>T	ENSMUSP00000141715.1:p.Ala132Ser	H-2-Kb	8	11	1	SSYQQGVL	ASYQQGVL	SMM	41.662	78.116	1.875	307	0.029	81.698	170.164	2.083	259.72	98.72	232	133.6	78.11600059	41.66198901	108.3278191	64.67553055	M6	-0.214285714	-0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.032	307	0	0	NA	6qB1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.171672362	sgMsh2	cell line
chr6	41059465	41059465	G	A	ENSMUST00000103265.4	NA	ENSMUSG00000107486	missense	C/Y	8	Trbv4	ENSMUST00000103265.4:c.23G>A	ENSMUSP00000144909.1:p.Cys8Tyr	H-2-Kb	8	7	2	SYVAFCLL	SCVAFCLL	NetMHCpan	77.4	267.2	3.452	153	0.183	180.57	305.061	1.689	558.92	115.25	267.2	77.4	338.6413603	245.8895091	271.4813499	268.3737286	M6	2.514285714	2.514285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.199	153	0	0	NA	6qB1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr6	41657965	41657965	T	C	ENSMUST00000031901.10	1	ENSMUSG00000036899	missense	T/A	526	Trpv5	ENSMUST00000031901.10:c.1576A>G	ENSMUSP00000031901.5:p.Thr526Ala	H-2-Kb	8	7	5	AMFSAFEL	AMFSTFEL	NetMHCpan	61	77.7	1.274	191	0.147	314.735	337.058	1.071	162.74	223.27	77.7	61	596.6779652	406.2000757	511.3755976	424.3654321	M6	1.257142857	1.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.154	191	0	0	NA	6qB2.1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.826173244	sgMsh2	cell line
chr6	42286884	42286884	TG	T	ENSMUST00000031894.12	1	ENSMUSG00000029862	FS	G/X	40	Clcn1	ENSMUST00000031894.12:c.122del	ENSMUSP00000031894.6:p.Gly41AlafsTer70	H-2-Kb	8	28	0	TQHRYMAI	NA	NetMHC	259.42	NA	NA	58	0.069	338.138	NA	NA	NA	259.42	NA	273.8	NA	443.3431473	NA	402.476011	M6	-0.614285714	-0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.087	58	0	0	NA	6qB2.1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.466734235	sgMsh2	cell line
chr6	87588585	87588585	G	T	ENSMUST00000204682.2	1	ENSMUSG00000049409	missense	L/I	93	Prokr1	ENSMUST00000204682.2:c.277C>A	ENSMUSP00000144999.1:p.Leu93Ile	H-2-Kb	8	10	2	KIRNLTNL	KLRNLTNL	SMM	278.445	1150.112	4.13	164	0.116	416.474	1652.446	3.968	3704.4	466.73	2052.5	1001	1150.111643	278.4453695	1252.391179	366.2182643	M6	-0.014285714	-0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.12	164	1	0	0	6qD1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.643771359	sgMsh2	cell line
chr6	41685379	41685379	GT	G	ENSMUST00000031900.5	1	ENSMUSG00000029867	FS	F/X	106	Llcfc1	ENSMUST00000031900.5:c.323del	ENSMUSP00000031900.5:p.Leu108TyrfsTer5	H-2-Kb	9	8	6	SIMFFYERL	NA	NetMHCpan	6	NA	NA	126	0.183	20.721	NA	NA	NA	7.86	NA	6	NA	33.58226621	NA	35.5017695	M6	0.285714286	0.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1825	126	0	0	NA	6qB2.1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.979068942	sgMsh2	cell line
chr6	41059465	41059465	G	A	ENSMUST00000103265.4	NA	ENSMUSG00000107486	missense	C/Y	8	Trbv4	ENSMUST00000103265.4:c.23G>A	ENSMUSP00000144909.1:p.Cys8Tyr	H-2-Kb	9	6	3	LSYVAFCLL	LSCVAFCLL	NetMHC	12.4	422.88	34.103	153	0.183	30.943	494.808	15.991	422.88	12.4	541.3	17	511.811453	44.88590645	477.8042407	66.56562285	M6	2.514285714	2.514285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.199	153	0	0	NA	6qB1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr6	89870010	89870010	TG	T	ENSMUST00000226983.1	NA	ENSMUSG00000068231	FS	Q/X	165	Vmn1r43	ENSMUST00000226983.1:c.493del	ENSMUSP00000153713.1:p.Gln165AsnfsTer12	H-2-Kb	9	9	3	SSNSWYQSL	NA	NetMHC	14.29	NA	NA	353	0.028	70.368	NA	NA	NA	14.29	NA	55.6	NA	85.13536455	NA	113.3052413	M6	-1	-1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.028	353	0	0	NA	6qD1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.150213317	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	9	3	9	LVLVSYTRL	LVLVSYTRI	NetMHC	46.33	202.94	4.38	148	0.23	99.281	285.444	2.875	202.94	46.33	207.6	48.9	371.6293451	149.6614677	363.2871195	157.1267038	M6	0.642857143	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.236	148	0	0	NA	6qB2.1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr6	89870010	89870010	TG	T	ENSMUST00000226983.1	NA	ENSMUSG00000068231	FS	Q/X	165	Vmn1r43	ENSMUST00000226983.1:c.493del	ENSMUSP00000153713.1:p.Gln165AsnfsTer12	H-2-Kb	9	12	0	SWYQSLPPL	NA	SMM	41.031	NA	NA	353	0.028	60.05	NA	NA	NA	48.2	NA	71.9	NA	41.03080144	NA	72.6524058	M6	-0.171428571	-0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.028	353	0	0	NA	6qD1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.150213317	sgMsh2	cell line
chr6	40612821	40612821	CA	C	ENSMUST00000076565.2	NA	ENSMUSG00000058250	FS	C/X	164	Tas2r138	ENSMUST00000076565.2:c.490del	ENSMUSP00000075876.2:p.Cys164AlafsTer13	H-2-Kb	9	5	7	CLWDFFADL	CLWDFFCRS	NetMHC	103.62	3815.78	36.825	98	0.194	231.884	2401.986	10.359	3815.78	103.62	3432.3	158.1	783.6280984	327.4236157	1371.671136	305.6680173	M6	0.471428571	1.328571429	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.204	98	0	0	NA	6qB1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr6	41657965	41657965	T	C	ENSMUST00000031901.10	1	ENSMUSG00000036899	missense	T/A	526	Trpv5	ENSMUST00000031901.10:c.1576A>G	ENSMUSP00000031901.5:p.Thr526Ala	H-2-Kb	9	10	2	SAFELFLTI	STFELFLTI	NetMHCpan	31.6	33.2	1.051	191	0.147	136.727	180.488	1.32	139.61	112.72	33.2	31.6	221.3655323	160.7348318	225.0349638	174.2809827	M6	1.928571429	1.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.154	191	0	0	NA	6qB2.1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.826173244	sgMsh2	cell line
chr6	41657965	41657965	T	C	ENSMUST00000031901.10	1	ENSMUSG00000036899	missense	T/A	526	Trpv5	ENSMUST00000031901.10:c.1576A>G	ENSMUSP00000031901.5:p.Thr526Ala	H-2-Kb	9	7	5	AMFSAFELF	AMFSTFELF	SMM	108.171	90.18	0.834	191	0.147	145.735	135.545	0.93	126.29	169.67	144.8	121.8	90.17995204	108.1707896	163.0234201	182.4945923	M6	1.385714286	1.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.154	191	0	0	NA	6qB2.1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.826173244	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	9	4	8	VLVSYTRLL	VLVSYTRIL	NetMHCpan	118.1	254.3	2.153	148	0.23	338.726	712.479	2.103	683.46	204.18	254.3	118.1	741.4980274	473.271116	959.9530659	622.6586131	M6	0.642857143	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.236	148	0	0	NA	6qB2.1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr6	108399280	108399280	C	T	ENSMUST00000032192.8	1	ENSMUSG00000030102	missense	R/W	1235	Itpr1	ENSMUST00000032192.8:c.3703C>T	ENSMUSP00000032192.6:p.Arg1235Trp	H-2-Kb	9	9	3	IMWLAHEFL	IMRLAHEFL	NetMHCpan	173.3	364.8	2.105	105	0.343	275.443	622.207	2.259	738.74	227.21	364.8	173.3	566.3827268	323.6756285	678.0317017	326.7758854	M6	0.657142857	0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.361	105	17	6	0.352941176	6qE1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr6	78376435	78376435	G	A	ENSMUST00000089667.7	1	ENSMUSG00000068341	missense	H/Y	142	Reg3d	ENSMUST00000089667.7:c.424C>T	ENSMUSP00000087096.1:p.His142Tyr	H-2-Kb	9	10	2	AYHGYCAAL	AHHGYCAAL	NetMHC	233.75	211.3	0.904	151	0.199	376.342	460.876	1.225	211.3	233.75	464.4	454.2	563.7804345	406.5462879	457.3513865	346.1385739	M6	0.714285714	0.714285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.219	151	0	0	NA	6qC3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr6	57258876	57258876	T	C	ENSMUST00000228297.1	NA	ENSMUSG00000115199	missense	V/A	243	Vmn1r15	ENSMUST00000228297.1:c.728T>C	ENSMUSP00000154252.1:p.Val243Ala	H-2-Kb	9	5	7	FVVMYWADF	FVVMYWVDF	NetMHC	306.14	761.72	2.488	283	0.035	379.005	706.007	1.863	761.72	306.14	3331.3	836.6	650.2943789	450.9309038	416.1500968	307.0789168	M6	0.714285714	1.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.039	283	0	0	NA	6qB3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.209225692	sgMsh2	cell line
chr6	42286884	42286884	TG	T	ENSMUST00000031894.12	1	ENSMUSG00000029862	FS	G/X	40	Clcn1	ENSMUST00000031894.12:c.122del	ENSMUSP00000031894.6:p.Gly41AlafsTer70	H-2-Kb	9	60	0	TAWMRTTIL	NA	NetMHCpan	157.5	NA	NA	58	0.069	221.615	NA	NA	NA	328.86	NA	157.5	NA	251.2522734	NA	191.9773533	M6	0.485714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.087	58	0	0	NA	6qB2.1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.466734235	sgMsh2	cell line
chr6	57258876	57258876	T	C	ENSMUST00000228297.1	NA	ENSMUSG00000115199	missense	V/A	243	Vmn1r15	ENSMUST00000228297.1:c.728T>C	ENSMUSP00000154252.1:p.Val243Ala	H-2-Kb	9	7	5	VMYWADFII	VMYWVDFII	SMM	154.565	218.328	1.413	283	0.035	312.379	430.03	1.377	602.28	395.01	1029	537.3	218.3282833	154.5645878	257.7804634	229.7470798	M6	1.128571429	1.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.039	283	0	0	NA	6qB3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.209225692	sgMsh2	cell line
chr6	57360638	57360638	T	C	ENSMUST00000227186.1	NA	ENSMUSG00000115644	missense	I/M	247	Vmn1r17	ENSMUST00000227186.1:c.741A>G	ENSMUSP00000154334.1:p.Ile247Met	H-2-Kb	9	3	9	VMYWVDFIM	VMYWVDFII	SMM	115.641	218.328	1.888	312	0.208	275.792	430.03	1.559	602.28	400.49	1029	521.4	218.3282833	115.6405104	257.7804634	151.0949676	M6	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.201	312	0	0	NA	6qB3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr6	87588585	87588585	G	T	ENSMUST00000204682.2	1	ENSMUSG00000049409	missense	L/I	93	Prokr1	ENSMUST00000204682.2:c.277C>A	ENSMUSP00000144999.1:p.Leu93Ile	H-2-Kb	9	3	9	TALARYKKI	TALARYKKL	SMMPMBEC	242.801	105.015	0.433	164	0.116	406.444	119.207	0.293	88.89	408.21	133.4	665.8	162.970876	404.6783774	105.0146768	242.8007366	M6	-0.5	-0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.12	164	1	0	0	6qD1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.643771359	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	9	6	6	VSYTRLLVA	VSYTRILVA	NetMHCpan	129.9	163.6	1.259	148	0.23	176.155	270.535	1.536	712.71	415.25	163.6	129.9	323.6756285	203.287184	217.3952246	149.021867	M6	1.014285714	1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.236	148	0	0	NA	6qB2.1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr6	90179503	90179503	T	C	ENSMUST00000228665.1	NA	ENSMUSG00000060816	missense	I/T	263	Vmn1r52	ENSMUST00000228665.1:c.788T>C	ENSMUSP00000154275.1:p.Ile263Thr	H-2-Kb	9	5	7	ISYSRTTLQ	ISYSRTILQ	SMM	93.134	98.426	1.057	378	0.206	401.692	520.741	1.296	926.07	698.37	2548.2	2161.6	98.4260372	93.13437404	115.411743	105.0146768	M6	-1.1	-0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	378	0	0	NA	6qD1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr6	78376435	78376435	G	A	ENSMUST00000089667.7	1	ENSMUSG00000068341	missense	H/Y	142	Reg3d	ENSMUST00000089667.7:c.424C>T	ENSMUSP00000087096.1:p.His142Tyr	H-2-Kb	10	9	3	SAYHGYCAAL	SAHHGYCAAL	NetMHC	16.5	239.43	14.511	151	0.199	357.454	1524.234	4.264	239.43	16.5	388.6	23.3	2973.924919	793.1037439	2659.867482	691.6079869	M6	0.714285714	0.714285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.219	151	0	0	NA	6qC3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr6	142003500	142003500	A	G	ENSMUST00000181791.7	5	ENSMUSG00000079263	missense	L/P	50	Gm6614	ENSMUST00000181791.7:c.149T>C	ENSMUSP00000137696.1:p.Leu50Pro	H-2-Db	9	6	6	FGIGNPLLI	FGIGNLLLI	NetMHCpan	55.6	40	0.719	155	0.174	115.692	74.539	0.644	51.9	85.31	40	55.6	109.8044649	159.8159056	97.17845721	146.0730172	M6	1.585714286	1.585714286	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.171	155	0	0	NA	6qG2	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.917374186	sgMsh2	cell line
chr6	122850369	122850369	TA	T	ENSMUST00000042081.8	1	ENSMUSG00000040552	FS	P/X	296	C3ar1	ENSMUST00000042081.8:c.888del	ENSMUSP00000048092.8:p.Thr297LeufsTer30	H-2-Db	9	4	9	SAHTELFPL	SAHTELFPT	NetMHCpan	218.3	4631	21.214	217	0.152	409.612	4501.197	10.989	10902.8	576.21	4631	218.3	4371.394485	424.2481918	2802.65732	394.9753567	M6	0.2	0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.157	217	0	0	NA	6qF2	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.842267528	sgMsh2	cell line
chr7	10447363	10447363	G	A	ENSMUST00000055964.7	NA	ENSMUSG00000046716	missense	V/M	185	Vmn1r67	ENSMUST00000055964.7:c.553G>A	ENSMUSP00000060746.4:p.Val185Met	H-2-Db	9	7	5	TALVMCPEI	TALVVCPEI	SMMPMBEC	112.091	615.985	5.495	317	0.215	418.092	2187.778	5.233	11128.06	1102.55	3746.6	698.9	628.955617	137.2840238	615.9848061	112.0908081	M6	1.685714286	1.7	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.221	317	0	0	NA	7qA1	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr6	122850369	122850369	TA	T	ENSMUST00000042081.8	1	ENSMUSG00000040552	FS	P/X	296	C3ar1	ENSMUST00000042081.8:c.888del	ENSMUSP00000048092.8:p.Thr297LeufsTer30	H-2-Db	10	26	0	IMLTNSRMTI	NA	NetMHC	60.3	NA	NA	217	0.152	487.762	NA	NA	NA	60.3	NA	280.1	NA	695.4245209	NA	814.0854636	M6	-0.542857143	0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.157	217	0	0	NA	6qF2	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.842267528	sgMsh2	cell line
chr7	5410476	5410476	T	C	ENSMUST00000108569.3	1	ENSMUSG00000078808	missense	I/V	252	Vmn1r58	ENSMUST00000108569.3:c.754A>G	ENSMUSP00000104209.2:p.Ile252Val	H-2-Kb	8	11	1	VSFVESRL	ISFVESRL	SMMPMBEC	11.634	11.343	0.975	288	0.198	14.49	14.995	1.035	14.39	13.68	15.6	15.3	17.32766328	16.24575876	11.3433152	11.63429308	M6	0.171428571	0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.196	288	0	0	NA	7qA1	chr7-3896664-7472715	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr6	132980733	132980733	A	G	ENSMUST00000067539.3	NA	ENSMUSG00000062528	missense	L/P	78	Tas2r109	ENSMUST00000067539.3:c.233T>C	ENSMUSP00000069300.3:p.Leu78Pro	H-2-Kb	8	8	4	ISSPYPYL	ISSLYPYL	NetMHC	20.58	8.61	0.418	206	0.053	36.815	19.424	0.528	8.61	20.58	11.7	21.9	27.14813499	51.72970479	28.23189304	64.82462304	M6	-0.514285714	-0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.054	206	0	0	NA	6qG1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.289697112	sgMsh2	cell line
chr6	133036200	133036200	C	A	ENSMUST00000032317.3	NA	ENSMUSG00000030196	missense	R/M	301	Tas2r103	ENSMUST00000032317.3:c.902G>T	ENSMUSP00000032317.3:p.Arg301Met	H-2-Kb	8	10	2	LMYKYKHI	LRYKYKHI	NetMHC	22.46	837.26	37.278	90	0.222	81.621	874.363	10.713	837.26	22.46	1435.1	32.1	911.4650073	193.5263029	610.5763804	131.1414557	M6	-1.028571429	-1.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.228	90	0	0	NA	6qG1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr6	148846202	148846202	T	A	ENSMUST00000111569.8	1	ENSMUSG00000030309	missense	Q/L	805	Caprin2	ENSMUST00000111569.8:c.2414A>T	ENSMUSP00000107195.2:p.Gln805Leu	H-2-Kb	8	5	7	SSGNYSLL	SSGNYSQL	NetMHC	34.49	38.02	1.102	90	0.211	68.509	49.962	0.729	38.02	34.49	149.3	135.8	53.17897962	68.82401428	46.74552051	68.19303192	M6	0.114285714	0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.22	90	12	3	0.25	6qG3	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr7	6461136	6461136	T	C	ENSMUST00000214301.2	5	ENSMUSG00000048620	missense	V/A	209	Olfr1336	ENSMUST00000214301.2:c.626T>C	ENSMUSP00000150162.1:p.Val209Ala	H-2-Kb	8	10	2	IAILWGSL	IVILWGSL	NetMHCpan	26.7	38.1	1.427	333	0.021	48.129	52.985	1.101	49.64	35.34	38.1	26.7	82.36448742	81.04757034	56.33003227	60.91720937	M6	1.685714286	1.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.023	333	0	0	NA	7qA1	chr7-3896664-7472715	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.12338951	sgMsh2	cell line
chr6	122850369	122850369	TA	T	ENSMUST00000042081.8	1	ENSMUSG00000040552	FS	P/X	296	C3ar1	ENSMUST00000042081.8:c.888del	ENSMUSP00000048092.8:p.Thr297LeufsTer30	H-2-Kb	8	14	0	LVVIYTPM	NA	NetMHCpan	73	NA	NA	217	0.152	177.665	NA	NA	NA	100.8	NA	73	NA	344.9371732	NA	254.5305993	M6	1.6	1.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.157	217	0	0	NA	6qF2	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.842267528	sgMsh2	cell line
chr7	4469203	4469203	GA	G	ENSMUST00000163893.7	1	ENSMUSG00000006154	FS	R/X	22	Eps8l1	ENSMUST00000163893.7:c.69del	ENSMUSP00000125840.1:p.Lys23AsnfsTer56	H-2-Kb	8	6	7	SIYEQRNV	SIYEQRKR	SMM	80.305	2021.808	25.177	213	0.042	140.518	10629.403	75.645	16431.11	121.91	19443.2	292.4	2021.808416	80.30452175	4827.696948	159.1255801	M6	-1.085714286	-1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.042	213	16	0	0	7qA1	chr7-3896664-7472715	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.225319976	sgMsh2	cell line
chr6	124039164	124039164	A	C	ENSMUST00000032238.4	1	ENSMUSG00000096630	missense	M/L	196	Vmn2r26	ENSMUST00000032238.4:c.586A>C	ENSMUSP00000032238.3:p.Met196Leu	H-2-Kb	8	9	3	FSLHTAAL	FSMHTAAL	SMMPMBEC	137.956	181.861	1.318	389	0.193	181.639	226.185	1.245	236.87	213.4	215.5	305.7	257.4779247	149.8787285	181.861178	137.9558114	M6	0.928571429	0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.184	389	0	0	NA	6qF2	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.987116084	sgMsh2	cell line
chr7	7876665	7876665	AT	A	ENSMUST00000170402.3	5	ENSMUSG00000091651	FS	K/X	849	Vmn2r36	ENSMUST00000170402.3:c.2547del	ENSMUSP00000132457.2:p.Lys849AsnfsTer15	H-2-Kb	8	17	0	IFQEFCQM	NA	SMM	145.124	NA	NA	426	0.059	211.429	NA	NA	NA	235.47	NA	244.8	NA	145.1242539	NA	187.3872337	M6	-0.071428571	0.3	FALSE	FALSE	FALSE	1	FALSE	0	Strelka2;Vardict	2	0.0587	426	0	0	NA	7qA1	chr7-7473826-10105930	3.38719038	2.38719038	1	0.93	4.989228032	RARE KARYOTYPE	1	0.31491149	sgMsh2	cell line
chr6	139494878	139494878	A	G	ENSMUST00000170650.2	1	ENSMUSG00000092164	missense	F/S	91	Rergl	ENSMUST00000170650.2:c.272T>C	ENSMUSP00000131303.1:p.Phe91Ser	H-2-Kb	8	11	1	SAFAQALI	FAFAQALI	NetMHCpan	202.8	349.1	1.721	170	0.035	263.166	556.823	2.116	599.91	242.71	349.1	202.8	513.7360001	283.6220554	683.502331	395.1299959	M6	1.857142857	1.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.032	170	0	0	NA	6qG2	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.171672362	sgMsh2	cell line
chr6	123815817	123815817	T	C	ENSMUST00000075095.6	5	ENSMUSG00000072780	missense	M/T	701	Vmn2r24	ENSMUST00000075095.6:c.2102T>C	ENSMUSP00000074602.5:p.Met701Thr	H-2-Kb	8	6	6	QMWMVTRL	QMWMVMRL	NetMHC	249.67	165.69	0.664	535	0.043	456.149	439.641	0.964	165.69	249.67	358.4	310.1	520.8827797	666.4076901	533.0156983	602.1989584	M6	0.814285714	0.814285714	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.045	535	0	0	NA	6qF2	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.24141426	sgMsh2	cell line
chr6	124702305	124702305	A	G	ENSMUST00000004381.13	1	ENSMUSG00000004270	missense	T/A	286	Lpcat3	ENSMUST00000004381.13:c.856A>G	ENSMUSP00000004381.7:p.Thr286Ala	H-2-Kb	8	5	7	VLYKYVAC	VLYKYVTC	SMM	109.079	181.443	1.663	210	0.133	207.544	193.816	0.934	537.41	308.5	197.2	294.1	181.4429089	109.0787117	190.4320313	120.9873599	M6	0.828571429	1.071428571	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.144	210	141	19	0.134751773	6qF2	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.772525631	sgMsh2	cell line
chr7	5075496	5075496	T	C	ENSMUST00000209099.1	1	ENSMUSG00000030435	missense	L/P	358	U2af2	ENSMUST00000209099.1:c.1073T>C	ENSMUSP00000147013.1:p.Leu358Pro	H-2-Kb	8	9	3	VTPQVPGL	VTLQVPGL	SMM	233.744	99.71	0.427	85	0.2	357.713	130.504	0.365	134.9	391.28	180.8	683.6	99.71029474	233.7437461	126.107234	324.1455024	M6	0.028571429	0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.166	85	231	25	0.108225108	7qA1	chr7-3896664-7472715	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.89055038	sgMsh2	cell line
chr6	139494878	139494878	A	G	ENSMUST00000170650.2	1	ENSMUSG00000092164	missense	F/S	91	Rergl	ENSMUST00000170650.2:c.272T>C	ENSMUSP00000131303.1:p.Phe91Ser	H-2-Kb	8	10	2	SSAFAQAL	SFAFAQAL	NetMHCpan	316.3	116.2	0.367	170	0.035	499.172	745.956	1.494	279.25	478.66	116.2	316.3	1212.662646	519.6847826	2580.714726	965.4727043	M6	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.032	170	0	0	NA	6qG2	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.171672362	sgMsh2	cell line
chr6	125980155	125980155	A	G	ENSMUST00000160496.7	1	ENSMUSG00000038115	missense	K/R	629	Ano2	ENSMUST00000160496.7:c.1886A>G	ENSMUSP00000125303.1:p.Lys629Arg	H-2-Kb	8	6	6	KAFLLRFV	KAFLLKFV	NetMHCpan	272.4	547.6	2.01	242	0.045	351.17	682.716	1.944	1229.78	480.77	547.6	272.4	681.9303192	330.1718172	683.502331	372.1688324	M6	2.1	2.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.048	242	0	0	NA	6qF3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.257508544	sgMsh2	cell line
chr6	148846202	148846202	T	A	ENSMUST00000111569.8	1	ENSMUSG00000030309	missense	Q/L	805	Caprin2	ENSMUST00000111569.8:c.2414A>T	ENSMUSP00000107195.2:p.Gln805Leu	H-2-Kb	8	7	5	GNYSLLQL	GNYSQLQL	NetMHCpan	200.9	585.8	2.916	90	0.211	311.197	581.775	1.869	1886.79	647.72	585.8	200.9	555.5715525	352.1599796	577.750061	270.2340064	M6	0.328571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.22	90	12	3	0.25	6qG3	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr6	148846202	148846202	T	A	ENSMUST00000111569.8	1	ENSMUSG00000030309	missense	Q/L	805	Caprin2	ENSMUST00000111569.8:c.2414A>T	ENSMUSP00000107195.2:p.Gln805Leu	H-2-Kb	9	4	8	VSSGNYSLL	VSSGNYSQL	NetMHC	73.92	85.39	1.155	90	0.211	125.362	135.468	1.081	85.39	73.92	186	161.8	151.7434661	119.4290561	119.1927939	131.2955479	M6	0.114285714	0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.22	90	12	3	0.25	6qG3	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr7	6461136	6461136	T	C	ENSMUST00000214301.2	5	ENSMUSG00000048620	missense	V/A	209	Olfr1336	ENSMUST00000214301.2:c.626T>C	ENSMUSP00000150162.1:p.Val209Ala	H-2-Kb	9	10	2	IAILWGSLL	IVILWGSLL	NetMHC	79.58	110.35	1.387	333	0.021	134.3	179.951	1.34	110.35	79.58	151.4	83.2	208.5018919	185.4001153	225.0349638	194.6480243	M6	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.023	333	0	0	NA	7qA1	chr7-3896664-7472715	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.12338951	sgMsh2	cell line
chr6	124837668	124837668	T	A	ENSMUST00000024206.5	1	ENSMUSG00000023439	missense	K/M	89	Gnb3	ENSMUST00000024206.5:c.266A>T	ENSMUSP00000024206.5:p.Lys89Met	H-2-Kb	9	9	3	TNMVHAIPL	TNKVHAIPL	NetMHCpan	46.3	608.2	13.136	198	0.207	121.892	535.882	4.396	791.79	85.62	608.2	46.3	463.5643185	158.1648595	425.8434778	178.7516256	M6	1.628571429	1.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	198	0	0	NA	6qF2	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	5410476	5410476	T	C	ENSMUST00000108569.3	1	ENSMUSG00000078808	missense	I/V	252	Vmn1r58	ENSMUST00000108569.3:c.754A>G	ENSMUSP00000104209.2:p.Ile252Val	H-2-Kb	9	5	7	ITILFHVSF	ITILFHISF	NetMHC	88.07	93.98	1.067	288	0.198	134.087	152.688	1.139	93.98	88.07	188.8	133.2	156.3543614	159.628341	149.021867	134.9739632	M6	2.014285714	2.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.196	288	0	0	NA	7qA1	chr7-3896664-7472715	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr6	124837668	124837668	T	A	ENSMUST00000024206.5	1	ENSMUSG00000023439	missense	K/M	89	Gnb3	ENSMUST00000024206.5:c.266A>T	ENSMUSP00000024206.5:p.Lys89Met	H-2-Kb	9	3	9	VWDTYTTNM	VWDTYTTNK	SMM	229.145	3163.079	13.804	198	0.207	308.787	7373.407	23.879	11332.92	314.01	17062.3	1071.2	3163.078717	229.1447967	3413.893746	303.5638135	M6	-1.214285714	-0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	198	0	0	NA	6qF2	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr6	134484391	134484391	T	G	ENSMUST00000032322.14	1	ENSMUSG00000030201	missense	E/A	701	Lrp6	ENSMUST00000032322.14:c.2102A>C	ENSMUSP00000032322.8:p.Glu701Ala	H-2-Kb	9	4	8	SALEHVVAF	SALEHVVEF	NetMHC	346.5	552.55	1.595	152	0.23	444.167	549.223	1.237	552.55	346.5	572.2	399.4	545.8961105	515.3591605	539.8212792	488.9337312	M6	1.442857143	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.222	152	113	20	0.17699115	6qG1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr6	123815817	123815817	T	C	ENSMUST00000075095.6	5	ENSMUSG00000072780	missense	M/T	701	Vmn2r24	ENSMUST00000075095.6:c.2102T>C	ENSMUSP00000074602.5:p.Met701Thr	H-2-Kb	9	8	4	WMVTRLSNV	WMVMRLSNV	SMMPMBEC	371.749	308.496	0.83	535	0.043	393.346	326.071	0.829	273.51	374.49	1055.2	1159.9	343.6449768	412.2019102	308.4963287	371.7491635	M6	0.385714286	0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.045	535	0	0	NA	6qF2	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.24141426	sgMsh2	cell line
chr7	7876665	7876665	AT	A	ENSMUST00000170402.3	5	ENSMUSG00000091651	FS	K/X	849	Vmn2r36	ENSMUST00000170402.3:c.2547del	ENSMUSP00000132457.2:p.Lys849AsnfsTer15	H-2-Kb	9	16	0	QIFQEFCQM	NA	NetMHCpan	266.4	NA	NA	426	0.059	295.785	NA	NA	NA	377.13	NA	266.4	NA	272.9669078	NA	318.6031021	M6	-0.071428571	0.3	TRUE	FALSE	FALSE	1	FALSE	0	Strelka2;Vardict	2	0.0587	426	0	0	NA	7qA1	chr7-7473826-10105930	3.38719038	2.38719038	1	0.93	4.989228032	RARE KARYOTYPE	1	0.31491149	sgMsh2	cell line
chr6	127146068	127146068	G	T	ENSMUST00000000188.11	1	ENSMUSG00000000184	missense	L/M	175	Ccnd2	ENSMUST00000000188.11:c.523C>A	ENSMUSP00000000188.8:p.Leu175Met	H-2-Kb	9	10	2	SMIRKHAQT	SLIRKHAQT	SMMPMBEC	369.19	2209.276	5.984	103	0.184	493.24	4167.215	8.449	4047.86	425.29	6721.4	2796.9	4286.570788	561.1900987	2209.276129	369.1900603	M6	-1.357142857	-0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.18	103	1083	170	0.156971376	6qF3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.965657038	sgMsh2	cell line
chr6	122850369	122850369	TA	T	ENSMUST00000042081.8	1	ENSMUSG00000040552	FS	P/X	296	C3ar1	ENSMUST00000042081.8:c.888del	ENSMUSP00000048092.8:p.Thr297LeufsTer30	H-2-Kb	9	4	9	SAHTELFPL	SAHTELFPT	NetMHCpan	438.2	6282	14.336	217	0.152	442.376	4341.538	9.814	5757.24	443.07	6282	438.2	2553.347944	441.6823044	2925.83614	582.4383998	M6	0.2	0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.157	217	0	0	NA	6qF2	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.842267528	sgMsh2	cell line
chr6	147535727	147535727	CA	C	ENSMUST00000032441.13	1	ENSMUSG00000030301	FS	Q/X	137	Ccdc91	ENSMUST00000032441.13:c.415del	ENSMUSP00000032441.6:p.Ile139TyrfsTer25	H-2-Kb	9	15	0	VWRLNSKLL	NA	SMM	215.829	NA	NA	134	0.276	483.975	NA	NA	NA	453.61	NA	2508.4	NA	215.8291001	NA	514.3396441	M6	-0.185714286	-0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.287	134	33	0	0	6qG3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr7	26611187	26611187	T	C	ENSMUST00000228367.1	NA	ENSMUSG00000091924	missense	M/V	298	Vmn1r185	ENSMUST00000228367.1:c.892A>G	ENSMUSP00000154816.1:p.Met298Val	H-2-Db	9	8	4	YSLVSRFNL	YSLMSRFNL	NetMHC	136.82	215.91	1.578	196	0.051	299.155	452.516	1.513	215.91	136.82	303	280.9	602.0325877	317.4095578	657.007005	372.8807814	M6	0.828571429	0.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.05	196	0	0	NA	7qA3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.268238066	sgMsh2	cell line
chr7	25272796	25272796	A	G	ENSMUST00000169266.7	1	ENSMUSG00000005442	missense	I/V	651	Cic	ENSMUST00000169266.7:c.1951A>G	ENSMUSP00000132351.1:p.Ile651Val	H-2-Db	10	2	10	FSPINASPVV	FSPINASPVI	NetMHC	14.9	8.41	0.564	60	0.183	465.206	229.143	0.493	8.41	14.9	34.4	92.4	423.8869047	838.0115415	542.8376978	1013.141255	M6	1.257142857	1.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.173	60	32	8	0.25	7qA3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.928103709	sgMsh2	cell line
chr7	44461349	44461349	A	G	ENSMUST00000058667.14	1	ENSMUSG00000047085	missense	N/S	215	Lrrc4b	ENSMUST00000058667.14:c.644A>G	ENSMUSP00000053123.8:p.Asn215Ser	H-2-Kb	8	5	7	VNLRYLSL	VNLRYLNL	NetMHC	4.8	2.81	0.585	103	0.223	7.395	4.044	0.547	2.81	4.8	4.1	5	3.987860888	9.789037676	5.257024488	12.01544888	M6	0.185714286	0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	103	0	0	NA	7qB3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	19643130	19643130	A	C	ENSMUST00000055242.10	1	ENSMUSG00000002981	missense	F/V	170	Clptm1	ENSMUST00000055242.10:c.508T>G	ENSMUSP00000051293.9:p.Phe170Val	H-2-Kb	8	4	8	SIYIHVYV	SIYIHVYF	NetMHC	15.47	62.57	4.045	166	0.054	41.881	121.629	2.904	62.57	15.47	80.8	57.4	162.4575876	35.70590129	166.6249377	48.05515695	M6	1.657142857	1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.059	166	240	11	0.045833333	7qA3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.316520918	sgMsh2	cell line
chr7	29225257	29225257	A	G	ENSMUST00000085818.5	1	ENSMUSG00000046410	missense	Y/H	241	Kcnk6	ENSMUST00000085818.5:c.721T>C	ENSMUSP00000082975.4:p.Tyr241His	H-2-Kb	8	9	3	TAHLFLGL	TAYLFLGL	NetMHCpan	18.5	3.7	0.2	83	0.12	49.985	5.299	0.106	3.02	26.9	3.7	18.5	6.898267002	81.23440428	7.173646964	73.07015019	M6	1.771428571	1.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.151	83	3	0	0	7qB1	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.81007896	sgMsh2	cell line
chr7	28320255	28320255	A	G	ENSMUST00000209141.1	1	ENSMUSG00000003435	missense	F/L	497	Supt5	ENSMUST00000209141.1:c.1489T>C	ENSMUSP00000147164.1:p.Phe497Leu	H-2-Kb	8	11	1	LVILFSDL	FVILFSDL	NetMHCpan	33.8	63.7	1.885	126	0.063	68.106	75.272	1.105	40.58	34.18	63.7	33.8	93.70008827	130.2386842	86.84403626	102.0328459	M6	2.114285714	2.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.08	126	193	3	0.015544041	7qA3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.429180906	sgMsh2	cell line
chr7	46259908	46259908	T	C	ENSMUST00000164538.1	5	ENSMUSG00000009487	missense	S/P	601	Otog	ENSMUST00000164538.1:c.1801T>C	ENSMUSP00000130949.1:p.Ser601Pro	H-2-Kb	8	9	3	LSPVFLRV	LSSVFLRV	NetMHC	38.96	344.21	8.835	141	0.199	104.525	331.586	3.172	344.21	38.96	293.5	77	380.8377582	142.1477533	318.9627742	132.0504848	M6	1.157142857	1.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.202	141	0	0	NA	7qB3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	18681013	18681013	A	G	ENSMUST00000076677.3	5	ENSMUSG00000063305	missense	I/T	319	Psg20	ENSMUST00000076677.3:c.956T>C	ENSMUSP00000075973.3:p.Ile319Thr	H-2-Kb	8	5	7	STPYFRTV	STPYFRIV	NetMHC	39.77	154.5	3.885	409	0.21	151.333	360.148	2.38	154.5	39.77	249.6	97.2	470.6954498	205.466016	680.361923	260.4593785	M6	-0.257142857	-0.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.204	409	0	0	NA	7qA3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	27240043	27240043	A	G	ENSMUST00000108378.9	1	ENSMUSG00000003762	missense	N/S	166	Coq8b	ENSMUST00000108378.9:c.497A>G	ENSMUSP00000104015.3:p.Asn166Ser	H-2-Kb	8	11	1	SSFISPQL	NSFISPQL	NetMHCpan	37.1	365.8	9.86	234	0.188	46.041	356.964	7.753	1095.41	41.18	365.8	37.1	323.3999884	50.90260401	348.1288376	61.33946729	M6	0.628571429	0.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.193	234	19	1	0.052631579	7qA3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	41837597	41837597	T	C	ENSMUST00000171671.2	5	ENSMUSG00000090383	missense	T/A	625	Vmn2r58	ENSMUST00000171671.2:c.1873A>G	ENSMUSP00000126966.1:p.Thr625Ala	H-2-Kb	8	10	2	RALSYILL	RTLSYILL	NetMHCpan	43.9	45.4	1.034	373	0.032	69.404	53.299	0.768	43.72	44.24	45.4	43.9	61.19839043	94.56708451	66.18201718	104.6501849	M6	2.228571429	2.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.038	373	0	0	NA	7qB3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.20386093	sgMsh2	cell line
chr7	29096187	29096187	A	G	ENSMUST00000179893.8	5	ENSMUSG00000030592	missense	F/L	1093	Ryr1	ENSMUST00000179893.8:c.3277T>C	ENSMUSP00000137123.1:p.Phe1093Leu	H-2-Kb	8	4	8	SGRWYFEL	SGRWYFEF	NetMHC	44.53	936.27	21.026	63	0.27	78.42	1301.26	16.593	936.27	44.53	351.7	54.1	1670.090478	102.7401038	1666.249377	132.6600022	M6	-0.571428571	-0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe	3	0.258	63	0	0	NA	7qB1	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	19159634	19159634	T	C	ENSMUST00000094790.4	5	ENSMUSG00000030406	missense	T/A	341	Gipr	ENSMUST00000094790.4:c.1021A>G	ENSMUSP00000092384.3:p.Thr341Ala	H-2-Kb	8	8	4	STLALVPL	STLTLVPL	NetMHC	73.27	63.08	0.861	101	0.04	87	82.104	0.944	63.08	73.27	93.4	107.6	80.11982647	81.79749427	84.08915726	92.20192747	M6	2.157142857	2.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.043	101	0	0	NA	7qA3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.230684737	sgMsh2	cell line
chr7	29061567	29061567	T	G	ENSMUST00000179893.8	5	ENSMUSG00000030592	missense	E/A	3210	Ryr1	ENSMUST00000179893.8:c.9629A>C	ENSMUSP00000137123.1:p.Glu3210Ala	H-2-Kb	8	5	7	VAFLEPAL	VAFLEPEL	SMMPMBEC	62.336	172.878	2.773	50	0.16	71.002	166.794	2.349	160.71	73.81	135.6	77.4	202.1808416	68.19303192	172.8781076	62.33615346	M6	1.271428571	1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.17	50	0	0	NA	7qB1	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.912009425	sgMsh2	cell line
chr7	46287691	46287691	C	T	ENSMUST00000164538.1	5	ENSMUSG00000009487	missense	P/L	1608	Otog	ENSMUST00000164538.1:c.4823C>T	ENSMUSP00000130949.1:p.Pro1608Leu	H-2-Kb	8	11	1	LIPRFPLM	PIPRFPLM	NetMHC	74.61	3822.18	51.229	173	0.173	250.668	3165.294	12.627	3822.18	74.61	2849.3	115.2	2683.737286	386.1357391	3481.288376	409.9585987	M6	0.757142857	1.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.162	173	0	0	NA	7qB3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.869091335	sgMsh2	cell line
chr7	29225257	29225257	A	G	ENSMUST00000085818.5	1	ENSMUSG00000046410	missense	Y/H	241	Kcnk6	ENSMUST00000085818.5:c.721T>C	ENSMUSP00000082975.4:p.Tyr241His	H-2-Kb	8	5	7	KVLVTAHL	KVLVTAYL	NetMHC	175.61	259.86	1.48	83	0.12	245.282	288.63	1.177	259.86	175.61	317.4	242.4	323.3999884	338.6413603	255.1173529	248.1646968	M6	1.985714286	1.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.151	83	3	0	0	7qB1	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.81007896	sgMsh2	cell line
chr7	26611187	26611187	T	C	ENSMUST00000228367.1	NA	ENSMUSG00000091924	missense	M/V	298	Vmn1r185	ENSMUST00000228367.1:c.892A>G	ENSMUSP00000154816.1:p.Met298Val	H-2-Kb	8	4	8	FMRSYSLV	FMRSYSLM	NetMHC	238.94	166.52	0.697	196	0.051	450.026	344.108	0.765	166.52	238.94	202.1	466.8	486.1160944	433.2514252	558.1359543	516.1072977	M6	0.357142857	0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.05	196	0	0	NA	7qA3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.268238066	sgMsh2	cell line
chr7	46033961	46033961	T	C	ENSMUST00000033121.6	1	ENSMUSG00000030835	missense	S/P	44	Nomo1	ENSMUST00000033121.6:c.130T>C	ENSMUSP00000033121.5:p.Ser44Pro	H-2-Kb	8	8	4	INYPLIEI	INYSLIEI	NetMHCpan	77.5	43.5	0.561	82	0.183	353.93	215.929	0.61	146.27	262.47	43.5	77.5	285.5880296	445.3895263	301.1202761	562.0047679	M6	0.414285714	0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	82	107	15	0.140186916	7qB3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	44461349	44461349	A	G	ENSMUST00000058667.14	1	ENSMUSG00000047085	missense	N/S	215	Lrrc4b	ENSMUST00000058667.14:c.644A>G	ENSMUSP00000053123.8:p.Asn215Ser	H-2-Kb	8	10	2	LSLGMCNL	LNLGMCNL	SMMPMBEC	245.324	511.376	2.084	103	0.223	267.625	504.938	1.887	721	280.72	498.5	373.4	470.6954498	254.5305993	511.3755976	245.323979	M6	1.042857143	1.042857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	103	0	0	NA	7qB3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	42047016	42047016	T	C	ENSMUST00000168489.2	5	ENSMUSG00000092032	missense	I/V	101	Vmn2r59	ENSMUST00000168489.2:c.301A>G	ENSMUSP00000131856.1:p.Ile101Val	H-2-Kb	8	11	1	VGYGIYNI	IGYGIYNI	NetMHCpan	68.1	66.5	0.977	96	0.042	316.229	328.125	1.038	319.94	287.52	66.5	68.1	419.5077612	393.3145385	336.3101696	344.9371732	M6	0.3	0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.053	96	0	0	NA	7qB3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.28433235	sgMsh2	cell line
chr7	30057402	30057402	A	G	ENSMUST00000080834.14	5	ENSMUSG00000098022	missense	L/P	115	Zfp82	ENSMUST00000080834.14:c.344T>C	ENSMUSP00000079647.7:p.Leu115Pro	H-2-Kb	8	5	7	SGLKSLPL	SGLKSLLL	NetMHC	384.78	1345.27	3.496	89	0.18	478.592	1371.785	2.866	1345.27	384.78	1398.3	687.5	1139.567356	430.2689433	1451.242539	526.9143181	M6	0.671428571	0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.195	89	19	2	0.105263158	7qB1	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	55979873	55979873	A	G	ENSMUST00000052204.5	1	ENSMUSG00000047037	missense	L/P	164	Nipa1	ENSMUST00000052204.5:c.491T>C	ENSMUSP00000053871.5:p.Leu164Pro	H-2-Kb	8	8	4	IVLPMLLL	IVLLMLLL	NetMHCpan	194	302.9	1.561	72	0.139	389.679	217.781	0.559	244.69	427.5	302.9	194	190.8710225	363.6972355	181.0256018	415.6616909	M6	2.814285714	2.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.164	72	20	4	0.2	7qB5	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.879820857	sgMsh2	cell line
chr7	24908411	24908411	A	G	ENSMUST00000098683.10	1	ENSMUSG00000040940	missense	E/G	69	Arhgef1	ENSMUST00000098683.10:c.206A>G	ENSMUSP00000096280.4:p.Glu69Gly	H-2-Kb	8	6	6	VALQFGPG	VALQFEPG	SMM	70.915	168.167	2.371	66	0.212	436.511	1319.111	3.022	2396.82	776.03	3737.4	1563.1	168.1666993	70.91530907	241.4015198	96.99291239	M6	0.357142857	1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.219	66	65	17	0.261538462	7qA3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	26611187	26611187	T	C	ENSMUST00000228367.1	NA	ENSMUSG00000091924	missense	M/V	298	Vmn1r185	ENSMUST00000228367.1:c.892A>G	ENSMUSP00000154816.1:p.Met298Val	H-2-Kb	9	11	1	VSRFNLAHL	MSRFNLAHL	NetMHC	34.25	88.62	2.587	196	0.051	91.603	217.283	2.372	88.62	34.25	130.4	64.6	304.1655332	118.6069123	327.5291816	126.5464598	M6	0.142857143	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.05	196	0	0	NA	7qA3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.268238066	sgMsh2	cell line
chr7	23541176	23541176	A	G	ENSMUST00000098704.2	NA	ENSMUSG00000074291	missense	I/V	153	Vmn1r168	ENSMUST00000098704.2:c.457A>G	ENSMUSP00000096301.2:p.Ile153Val	H-2-Kb	9	5	7	ILYNVYVPM	ILYNVYIPM	NetMHCpan	31.9	38.5	1.207	458	0.148	84.52	90.886	1.075	75.05	72.38	38.5	31.9	136.8075294	139.6722084	106.721028	96.66071427	M6	0.371428571	1.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.155	458	0	0	NA	7qA3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.831538005	sgMsh2	cell line
chr7	26611187	26611187	T	C	ENSMUST00000228367.1	NA	ENSMUSG00000091924	missense	M/V	298	Vmn1r185	ENSMUST00000228367.1:c.892A>G	ENSMUSP00000154816.1:p.Met298Val	H-2-Kb	9	3	9	VFMRSYSLV	VFMRSYSLM	NetMHC	86.79	66.95	0.771	196	0.051	195.423	101.978	0.522	66.95	86.79	103.7	265	100.2559138	171.4391481	132.8158787	219.4067579	M6	0.357142857	0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.05	196	0	0	NA	7qA3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.268238066	sgMsh2	cell line
chr7	29225257	29225257	A	G	ENSMUST00000085818.5	1	ENSMUSG00000046410	missense	Y/H	241	Kcnk6	ENSMUST00000085818.5:c.721T>C	ENSMUSP00000082975.4:p.Tyr241His	H-2-Kb	9	8	4	VTAHLFLGL	VTAYLFLGL	NetMHCpan	60.3	48	0.796	83	0.12	154.464	101.378	0.656	66.89	127.33	48	60.3	135.865753	181.5975563	170.7064772	203.3527266	M6	1.771428571	1.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.151	83	3	0	0	7qB1	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.81007896	sgMsh2	cell line
chr7	29225257	29225257	A	G	ENSMUST00000085818.5	1	ENSMUSG00000046410	missense	Y/H	241	Kcnk6	ENSMUST00000085818.5:c.721T>C	ENSMUSP00000082975.4:p.Tyr241His	H-2-Kb	9	9	3	TAHLFLGLV	TAYLFLGLV	NetMHC	140.53	16.05	0.114	83	0.12	228.011	38.334	0.168	16.05	140.53	34	213.3	42.66875784	242.7224795	51.90987702	282.000579	M6	2.114285714	2.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.151	83	3	0	0	7qB1	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.81007896	sgMsh2	cell line
chr7	26611187	26611187	T	C	ENSMUST00000228367.1	NA	ENSMUSG00000091924	missense	M/V	298	Vmn1r185	ENSMUST00000228367.1:c.892A>G	ENSMUSP00000154816.1:p.Met298Val	H-2-Kb	9	6	6	RSYSLVSRF	RSYSLMSRF	NetMHCpan	141.6	108.4	0.766	196	0.051	189.696	134.173	0.707	111.27	145.45	108.4	141.6	157.0760603	233.9429705	198.2668013	302.8656361	M6	0.485714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.05	196	0	0	NA	7qA3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.268238066	sgMsh2	cell line
chr7	44461349	44461349	A	G	ENSMUST00000058667.14	1	ENSMUSG00000047085	missense	N/S	215	Lrrc4b	ENSMUST00000058667.14:c.644A>G	ENSMUSP00000053123.8:p.Asn215Ser	H-2-Kb	9	4	8	LVNLRYLSL	LVNLRYLNL	SMMPMBEC	129.196	114.881	0.889	103	0.223	148.556	115.141	0.775	62.08	155.17	115.4	218.4	121.9298389	141.9416992	114.8814742	129.1962773	M6	0.185714286	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	103	0	0	NA	7qB3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	29096187	29096187	A	G	ENSMUST00000179893.8	5	ENSMUSG00000030592	missense	F/L	1093	Ryr1	ENSMUST00000179893.8:c.3277T>C	ENSMUSP00000137123.1:p.Phe1093Leu	H-2-Kb	9	3	9	QSGRWYFEL	QSGRWYFEF	SMM	155.636	262.488	1.687	63	0.27	188.145	504.744	2.683	647.87	167.24	1424.6	323.7	262.4883301	155.6359783	361.6179668	209.0499173	M6	-0.571428571	-0.571428571	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe	3	0.258	63	0	0	NA	7qB1	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	41837597	41837597	T	C	ENSMUST00000171671.2	5	ENSMUSG00000090383	missense	T/A	625	Vmn2r58	ENSMUST00000171671.2:c.1873A>G	ENSMUSP00000126966.1:p.Thr625Ala	H-2-Kb	9	10	2	RALSYILLL	RTLSYILLL	NetMHCpan	108.3	113.1	1.044	373	0.032	251.553	336.393	1.337	272.74	212.63	113.1	108.3	400.0460623	290.4758291	502.6318444	389.2691619	M6	2.514285714	2.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.038	373	0	0	NA	7qB3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.20386093	sgMsh2	cell line
chr7	44860083	44860083	A	T	ENSMUST00000003044.13	1	ENSMUSG00000002963	missense	I/F	214	Pnkp	ENSMUST00000003044.13:c.640A>T	ENSMUSP00000003044.7:p.Ile214Phe	H-2-Kb	9	10	2	VFFTNQMGI	VIFTNQMGI	NetMHC	224.67	173.98	0.774	164	0.049	495.62	287.013	0.579	173.98	224.67	171	466.3	400.0460623	524.9404026	441.8247089	598.7561676	M6	0.157142857	0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.063	164	54	2	0.037037037	7qB3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.337979963	sgMsh2	cell line
chr7	45918149	45918149	A	G	ENSMUST00000164119.2	1	ENSMUSG00000040212	missense	Y/H	137	Emp3	ENSMUST00000164119.2:c.409T>C	ENSMUSP00000132519.1:p.Tyr137His	H-2-Kb	9	7	5	GSFGHCFAL	GSFGYCFAL	NetMHCpan	167.9	76.2	0.454	79	0.215	176.796	128.603	0.727	121.61	260.39	76.2	167.9	146.9298381	183.2778578	135.5969747	170.3138632	M6	1.442857143	1.442857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.232	79	58	14	0.24137931	7qB3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	56984956	56984956	G	T	ENSMUST00000068911.12	1	ENSMUSG00000055026	missense	L/I	160	Gabrg3	ENSMUST00000068911.12:c.478C>A	ENSMUSP00000067632.6:p.Leu160Ile	H-2-Kb	9	10	2	IIYTLRLTI	ILYTLRLTI	NetMHCpan	87.7	221.9	2.53	73	0.342	300.528	1013.302	3.372	1082	274.28	221.9	87.7	1253.458616	367.3753391	944.6044779	326.7758854	M6	0.7	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.338	73	0	0	NA	7qB5	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr7	55979873	55979873	A	G	ENSMUST00000052204.5	1	ENSMUSG00000047037	missense	L/P	164	Nipa1	ENSMUST00000052204.5:c.491T>C	ENSMUSP00000053871.5:p.Leu164Pro	H-2-Kb	9	8	4	IVLPMLLLL	IVLLMLLLL	SMM	204.696	121.649	0.594	72	0.139	235.633	198.63	0.843	238.68	304.54	1026.3	211.1	121.6494081	204.6963035	158.5805793	260.1656766	M6	2.757142857	2.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.164	72	20	4	0.2	7qB5	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.879820857	sgMsh2	cell line
chr7	25761460	25761460	T	C	ENSMUST00000002677.10	1	ENSMUSG00000002602	missense	K/R	708	Axl	ENSMUST00000002677.10:c.2123A>G	ENSMUSP00000002677.4:p.Lys708Arg	H-2-Kb	9	7	5	KMPVRWIAI	KMPVKWIAI	NetMHC	351.78	378.59	1.076	131	0.198	387.454	595.076	1.536	378.59	351.78	864.2	468.7	539.6472894	360.6699835	650.5040428	414.2380608	M6	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.171	131	647	128	0.197836167	7qA3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.917374186	sgMsh2	cell line
chr7	21260202	21260202	T	A	ENSMUST00000105200.1	NA	ENSMUSG00000094221	missense	N/I	139	Vmn1r124	ENSMUST00000105200.1:c.416A>T	ENSMUSP00000100835.1:p.Asn139Ile	H-2-Kb	9	10	2	AIYSCYSCW	ANYSCYSCW	SMMPMBEC	249.029	186.745	0.75	107	0.065	412.664	330.484	0.801	393.6	471.24	1002.8	1310.4	267.3683525	354.0870144	186.7454375	249.0290432	M6	-0.014285714	0.757142857	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Vardict	2	0.073	107	0	0	NA	7qA3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.391627577	sgMsh2	cell line
chr7	44905812	44905812	A	G	ENSMUST00000166972.8	1	ENSMUSG00000060279	missense	V/A	443	Ap2a1	ENSMUST00000166972.8:c.1328T>C	ENSMUSP00000127842.1:p.Val443Ala	H-2-Kb	9	5	7	VDYSWYADT	VDYSWYVDT	SMMPMBEC	136.852	185.46	1.355	123	0.195	430.402	1354.693	3.148	2462.72	689.76	3036.3	1824.5	246.6664026	171.044849	185.4598909	136.851638	M6	-0.957142857	-0.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.198	123	108	15	0.138888889	7qB3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	106886682	106886682	A	G	ENSMUST00000213918.1	5	ENSMUSG00000109354	missense	L/P	45	Olfr706	ENSMUST00000213918.1:c.134T>C	ENSMUSP00000150075.1:p.Leu45Pro	H-2-Db	9	4	8	ALISNGLPL	ALISNGLLL	NetMHC	33.8	360.48	10.665	253	0.209	70.033	297.93	4.254	360.48	33.8	314.3	56	270.7821299	84.06592577	281.5593799	84.83401077	M6	0.828571429	1.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	253	0	0	NA	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	86363962	86363962	C	T	ENSMUST00000213255.1	5	ENSMUSG00000055571	missense	C/Y	125	Olfr305	ENSMUST00000213255.1:c.374G>A	ENSMUSP00000149762.1:p.Cys125Tyr	H-2-Db	9	11	1	YSPLHYEVI	CSPLHYEVI	NetMHC	69.93	855.96	12.24	178	0.028	249.78	1074.438	4.302	855.96	69.93	699.4	110.9	2126.277776	651.0584801	1292.915077	388.6601375	M6	0.414285714	0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.035	178	0	0	NA	7qD3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.187766646	sgMsh2	cell line
chr7	86488673	86488673	T	C	ENSMUST00000217110.1	5	ENSMUSG00000062878	missense	S/G	293	Olfr298	ENSMUST00000217110.1:c.877A>G	ENSMUSP00000150228.1:p.Ser293Gly	H-2-Db	9	6	6	YSLRNGDVK	YSLRNSDVK	SMMPMBEC	155.443	160.905	1.035	245	0.233	236.8	279.325	1.18	384.22	301.96	2214.7	2374.5	174.4295257	171.6405905	160.9051705	155.4425814	M6	-1.114285714	-0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.24	245	0	0	NA	7qD3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	105337497	105337497	A	G	ENSMUST00000213290.1	5	ENSMUSG00000043948	missense	I/T	73	Olfr691	ENSMUST00000213290.1:c.218T>C	ENSMUSP00000150297.1:p.Ile73Thr	H-2-Db	9	4	8	SMLAITDTL	SMLAITDIL	NetMHCpan	179	464.6	2.596	136	0.294	364.26	1326.091	3.641	1789.51	388.41	464.6	179	1136.632317	340.1104688	1515.549062	485.9258466	M6	1.285714286	1.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.296	136	0	0	NA	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr7	66784798	66784798	T	C	ENSMUST00000066475.10	1	ENSMUSG00000030510	missense	W/R	216	Cers3	ENSMUST00000066475.10:c.646T>C	ENSMUSP00000069238.8:p.Trp216Arg	H-2-Kb	8	8	4	SQYRYYIL	SQYWYYIL	NetMHC	4.27	6.01	1.407	362	0.039	11.074	15.356	1.387	6.01	4.27	10.4	7.4	20.3114066	14.74823333	31.82291802	20.73671696	M6	-0.514285714	-0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.033	362	4	2	0.5	7qC	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.177037124	sgMsh2	cell line
chr7	102804243	102804243	T	C	ENSMUST00000061096.6	NA	ENSMUSG00000048469	missense	I/T	255	Olfr564	ENSMUST00000061096.6:c.764T>C	ENSMUSP00000129376.1:p.Ile255Thr	H-2-Kb	8	6	6	VAVFYTPL	VAVFYIPL	NetMHCpan	5.1	7.7	1.51	327	0.22	10.935	14.209	1.299	11.25	6.32	7.7	5.1	17.16880231	15.55034397	18.48161845	16.09681675	M6	1.285714286	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.219	327	0	0	NA	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	86695231	86695231	TA	T	ENSMUST00000080165.4	2	ENSMUSG00000060688	FS	L/X	258	Olfr292	ENSMUST00000080165.4:c.777del	ENSMUSP00000079060.3:p.Lys259AsnfsTer8	H-2-Kb	8	6	7	GAYVYLNL	GAYVYLKP	NetMHC	6.75	12486.07	1849.788	199	0.181	12.305	3750.636	304.809	12486.07	6.75	5427.6	8.1	2073.671696	21.2686537	1488.469706	16.50973111	M6	1.071428571	1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.179	199	0	0	NA	7qD3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.960292277	sgMsh2	cell line
chr7	108066532	108066532	T	C	ENSMUST00000071658.2	NA	ENSMUSG00000063120	missense	M/V	89	Olfr480	ENSMUST00000071658.2:c.265A>G	ENSMUSP00000071583.2:p.Met89Val	H-2-Kb	8	11	1	VYLFLSHL	MYLFLSHL	NetMHCpan	13.1	28.9	2.206	253	0.024	134.327	287.934	2.144	52.58	23.33	28.9	13.1	523.2870654	245.323979	556.8522772	262.8693795	M6	1.271428571	1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.03	253	0	0	NA	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.16094284	sgMsh2	cell line
chr7	103597434	103597434	A	G	ENSMUST00000214883.1	5	ENSMUSG00000073945	missense	I/M	39	Olfr618	ENSMUST00000214883.1:c.117A>G	ENSMUSP00000151147.1:p.Ile39Met	H-2-Kb	8	8	4	SMYMVALI	SMYIVALI	NetMHC	27.68	39.74	1.436	241	0.195	127.783	146.838	1.149	39.74	27.68	80.5	50.1	213.1768301	232.6697911	233.7437461	205.466016	M6	2.4	2.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.202	241	0	0	NA	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	104636454	104636454	T	C	ENSMUST00000215454.2	5	ENSMUSG00000073923	missense	V/A	260	Olfr657	ENSMUST00000215454.2:c.779T>C	ENSMUSP00000150070.1:p.Val260Ala	H-2-Kb	8	5	7	ILFFYTAV	ILFFYTVV	NetMHCpan	19.7	38.2	1.939	331	0.215	25.054	57.71	2.303	225.91	42.54	38.2	19.7	60.49785825	25.68857419	54.92119775	24.41968177	M6	1.914285714	1.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.213	331	0	0	NA	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	86363962	86363962	C	T	ENSMUST00000213255.1	5	ENSMUSG00000055571	missense	C/Y	125	Olfr305	ENSMUST00000213255.1:c.374G>A	ENSMUSP00000149762.1:p.Cys125Tyr	H-2-Kb	8	7	5	YVAIYSPL	YVAICSPL	NetMHCpan	39.3	887.3	22.578	178	0.028	72.171	1075.832	14.907	2249.13	48.68	887.3	39.3	1070.878008	95.66211974	1080.786721	110.5961477	M6	1.514285714	1.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.035	178	0	0	NA	7qD3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.187766646	sgMsh2	cell line
chr7	108031681	108031681	A	G	ENSMUST00000210173.2	3	ENSMUSG00000094426	missense	Y/H	221	Olfr478	ENSMUST00000210173.2:c.661T>C	ENSMUSP00000147713.1:p.Tyr221His	H-2-Kb	8	9	3	ISHIYILI	ISYIYILI	NetMHCpan	32.1	7	0.218	402	0.037	78.835	8.59	0.109	4.24	53.98	7	32.1	10.56185011	124.3769779	10.17981768	103.6907462	M6	1.714285714	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.038	402	0	0	NA	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.20386093	sgMsh2	cell line
chr7	105555462	105555462	AC	A	ENSMUST00000046983.9	1	ENSMUSG00000037049	FS	P/X	183	Smpd1	ENSMUST00000046983.9:c.551del	ENSMUSP00000042187.8:p.Pro184GlnfsTer72	H-2-Kb	8	47	0	VQIHFAAA	NA	SMMPMBEC	150.918	NA	NA	101	0.149	175.233	NA	NA	NA	165.65	NA	488.7	NA	184.8161845	NA	150.9176382	M6	0.857142857	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.156	101	55	2	0.036363636	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.836902767	sgMsh2	cell line
chr7	108171874	108171874	G	A	ENSMUST00000072035.3	NA	ENSMUSG00000096068	missense	P/L	290	Olfr486	ENSMUST00000072035.3:c.869C>T	ENSMUSP00000071918.3:p.Pro290Leu	H-2-Kb	8	5	7	VIPVLNLL	VIPVLNPL	NetMHC	173.73	43.03	0.248	277	0.022	354.134	130.801	0.369	43.03	173.73	146.4	422.9	115.8083836	306.71852	145.794117	401.5503419	M6	2.142857143	2.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.029	277	0	0	NA	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.155578078	sgMsh2	cell line
chr7	86269480	86269480	A	G	ENSMUST00000217724.1	5	ENSMUSG00000057540	missense	L/S	103	Olfr310	ENSMUST00000217724.1:c.308T>C	ENSMUSP00000151989.1:p.Leu103Ser	H-2-Kb	8	8	4	FSFSFCAC	FSFLFCAC	SMM	54.418	44.539	0.818	326	0.224	127.801	128.47	1.005	200.74	186.46	446.3	218.3	44.53895263	54.41767718	56.20047679	69.1416915	M6	1.542857143	1.585714286	FALSE	TRUE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.23	326	0	0	NA	7qD3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	104939177	104939177	C	T	ENSMUST00000214260.1	5	ENSMUSG00000073916	missense	S/F	217	Olfr669	ENSMUST00000214260.1:c.650C>T	ENSMUSP00000150928.1:p.Ser217Phe	H-2-Kb	8	10	2	IFVSYTMI	ISVSYTMI	NetMHC	191.09	18.91	0.099	253	0.202	211.47	52.961	0.25	18.91	191.09	24.5	205.3	100.6329027	234.8226582	81.42166892	217.6406428	M6	1.514285714	1.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.204	253	0	0	NA	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	108031681	108031681	A	G	ENSMUST00000210173.2	3	ENSMUSG00000094426	missense	Y/H	221	Olfr478	ENSMUST00000210173.2:c.661T>C	ENSMUSP00000147713.1:p.Tyr221His	H-2-Kb	8	7	5	IAISHIYI	IAISYIYI	NetMHCpan	132.8	22.8	0.172	402	0.037	294.664	57.982	0.197	28.92	212.85	22.8	132.8	99.25216755	384.3616066	87.04423244	376.4783444	M6	1.428571429	1.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.038	402	0	0	NA	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.20386093	sgMsh2	cell line
chr7	83618603	83618603	CA	C	ENSMUST00000039317.13	1	ENSMUSG00000038540	FS	S/X	758	Tmc3	ENSMUST00000039317.13:c.2276del	ENSMUSP00000046028.7:p.Lys759SerfsTer20	H-2-Kb	8	11	2	SSQRLSKL	NA	SMM	221.177	NA	NA	78	0.218	245.789	NA	NA	NA	236.46	NA	774.2	NA	221.1770188	NA	255.1173529	M6	-0.842857143	-0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.232	78	0	0	NA	7qD3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	91940074	91940074	T	A	ENSMUST00000107196.9	1	ENSMUSG00000052572	missense	I/N	227	Dlg2	ENSMUST00000107196.9:c.680T>A	ENSMUSP00000102814.2:p.Ile227Asn	H-2-Kb	8	5	7	SIYVTKNI	SIYVTKII	NetMHC	242.01	2437.57	10.072	113	0.044	286.831	2390.198	8.333	2437.57	242.01	1637.8	259.8	2481.646968	364.5356443	2342.825811	313.8629122	M6	0.542857143	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.039	113	0	0	NA	7qE1	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.209225692	sgMsh2	cell line
chr7	85222219	85222219	T	C	ENSMUST00000061074.9	5	ENSMUSG00000096861	missense	S/G	619	Vmn2r68	ENSMUST00000061074.9:c.1855A>G	ENSMUSP00000129411.1:p.Ser619Gly	H-2-Kb	8	8	4	QTLGYVLL	QTLSYVLL	SMM	209.768	91.147	0.435	280	0.239	235.525	83.173	0.353	53.12	242.55	75.2	228.5	91.14650073	209.7683683	119.0529058	275.892567	M6	1.885714286	1.885714286	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.237	280	0	0	NA	7qD3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	105555462	105555462	AC	A	ENSMUST00000046983.9	1	ENSMUSG00000037049	FS	P/X	183	Smpd1	ENSMUST00000046983.9:c.551del	ENSMUSP00000042187.8:p.Pro184GlnfsTer72	H-2-Kb	8	38	0	STWRAQTL	NA	NetMHCpan	140.5	NA	NA	101	0.149	249.349	NA	NA	NA	259.51	NA	140.5	NA	239.1883374	NA	262.2647967	M6	-0.671428571	-0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.156	101	55	2	0.036363636	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.836902767	sgMsh2	cell line
chr7	104129212	104129212	T	G	ENSMUST00000053743.5	NA	ENSMUSG00000055643	missense	D/A	135	Ubqln5	ENSMUST00000053743.5:c.404A>C	ENSMUSP00000062054.4:p.Asp135Ala	H-2-Kb	8	10	2	AAFFSQRV	ADFFSQRV	NetMHCpan	138.1	6760.2	48.951	68	0.265	418.572	5000.828	11.947	9640.55	282.85	6760.2	138.1	2646.91503	554.2937734	3241.455024	722.337231	M6	0.4	0.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.271	68	0	0	NA	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr7	103597434	103597434	A	G	ENSMUST00000214883.1	5	ENSMUSG00000073945	missense	I/M	39	Olfr618	ENSMUST00000214883.1:c.117A>G	ENSMUSP00000151147.1:p.Ile39Met	H-2-Kb	8	7	5	CSMYMVAL	CSMYIVAL	NetMHCpan	140	209.7	1.498	241	0.195	375.731	935.687	2.49	699.88	282.93	209.7	140	1461.302072	471.7805149	1171.493815	468.5328006	M6	1.642857143	1.642857143	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.202	241	0	0	NA	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	92624080	92624080	A	G	ENSMUST00000118157.7	1	ENSMUSG00000041343	missense	I/T	113	Ankrd42	ENSMUST00000118157.7:c.338T>C	ENSMUSP00000113767.1:p.Ile113Thr	H-2-Kb	8	10	2	LTINGANL	LIINGANL	SMMPMBEC	208.805	217.641	1.042	76	0.237	312.671	267.751	0.856	251.88	341.72	448	484.5	283.6220554	283.6220554	217.6406428	208.8045702	M6	0.285714286	0.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.254	76	10	2	0.2	7qE1	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	107902860	107902860	T	G	ENSMUST00000216937.2	3	ENSMUSG00000073893	missense	L/V	48	Olfr472	ENSMUST00000216937.2:c.142T>G	ENSMUSP00000150404.2:p.Leu48Val	H-2-Kb	8	11	1	VIRISSQL	LIRISSQL	SMM	217.14	1098.348	5.058	371	0.218	318.27	1856.107	5.832	2507.9	346.98	2954.6	880.8	1098.348092	217.1400833	1204.314735	289.5609548	M6	0.457142857	0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.212	371	0	0	NA	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	104553663	104553663	T	C	ENSMUST00000216904.1	5	ENSMUSG00000073928	missense	I/T	248	Olfr651	ENSMUST00000216904.1:c.743T>C	ENSMUSP00000150776.1:p.Ile248Thr	H-2-Kb	8	10	2	VTLMFYTP	VILMFYTP	SMM	203.582	203.582	1	203	0.232	249.877	303.105	1.213	377.26	372.21	680.5	280.1	203.5822922	203.5822922	228.9496585	219.6544469	M6	0.6	1.428571429	FALSE	FALSE	TRUE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.236	203	0	0	NA	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	102640431	102640431	T	C	ENSMUST00000214841.2	5	ENSMUSG00000073971	missense	Y/H	62	Olfr554	ENSMUST00000214841.2:c.184T>C	ENSMUSP00000150312.1:p.Tyr62His	H-2-Kb	8	10	2	MHFFLCML	MYFFLCML	SMM	148.505	239.188	1.611	123	0.22	175.216	257.858	1.472	379.78	401.79	221.3	160	239.1883374	148.504632	276.528565	190.4320313	M6	2.057142857	2.057142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	123	0	0	NA	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	108066532	108066532	T	C	ENSMUST00000071658.2	NA	ENSMUSG00000063120	missense	M/V	89	Olfr480	ENSMUST00000071658.2:c.265A>G	ENSMUSP00000071583.2:p.Met89Val	H-2-Kb	8	8	4	HTPVYLFL	HTPMYLFL	NetMHCpan	245.7	219.6	0.894	253	0.024	262.002	292.515	1.116	407.26	463.94	219.6	245.7	316.0385059	266.5262568	268.9923939	257.4779247	M6	1.571428571	1.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.03	253	0	0	NA	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.16094284	sgMsh2	cell line
chr7	86269480	86269480	A	G	ENSMUST00000217724.1	5	ENSMUSG00000057540	missense	L/S	103	Olfr310	ENSMUST00000217724.1:c.308T>C	ENSMUSP00000151989.1:p.Leu103Ser	H-2-Kb	8	6	6	QIFSFSFC	QIFSFLFC	SMM	150.224	243.635	1.622	326	0.224	367.79	1091.668	2.968	2008.42	489.69	1776.2	513.2	243.6351806	150.2242346	407.1364636	245.8895091	M6	1.971428571	1.971428571	TRUE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.23	326	0	0	NA	7qD3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	100029349	100029349	A	C	ENSMUST00000107084.7	1	ENSMUSG00000030732	missense	K/T	376	Chrdl2	ENSMUST00000107084.7:c.1127A>C	ENSMUSP00000102699.1:p.Lys376Thr	H-2-Kb	8	10	2	VTGIYHLV	VKGIYHLV	SMMPMBEC	259.263	1488.47	5.741	65	0.277	418.532	4047.185	9.67	7154.5	645.35	6605.9	574.8	1437.937467	262.2647967	1488.469706	259.2626764	M6	0.985714286	0.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.3	65	0	0	NA	7qE2	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr7	104635816	104635816	CA	C	ENSMUST00000215454.2	5	ENSMUSG00000073923	FS	T/X	47	Olfr657	ENSMUST00000215454.2:c.143del	ENSMUSP00000150070.1:p.Asn48ThrfsTer14	H-2-Kb	8	13	0	CSFSSSSV	NA	NetMHCpan	347.8	NA	NA	281	0.185	456.107	NA	NA	NA	759.7	NA	347.8	NA	373.0267702	NA	539.1877292	M6	0.428571429	0.428571429	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.191	281	0	0	NA	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	106677976	106677976	T	C	ENSMUST00000215541.1	5	ENSMUSG00000051680	missense	K/R	170	Olfr693	ENSMUST00000215541.1:c.509A>G	ENSMUSP00000150203.1:p.Lys170Arg	H-2-Kb	8	5	7	MQYPFCRS	MQYPFCKS	SMM	110.342	315.312	2.858	276	0.178	395.159	833.205	2.109	3782.69	1164.02	1129.7	594.1	315.3116375	110.3417837	536.7103866	196.218522	M6	-0.914285714	-0.528571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.187	276	0	0	NA	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	102804243	102804243	T	C	ENSMUST00000061096.6	NA	ENSMUSG00000048469	missense	I/T	255	Olfr564	ENSMUST00000061096.6:c.764T>C	ENSMUSP00000129376.1:p.Ile255Thr	H-2-Kb	9	5	7	AVAVFYTPL	AVAVFYIPL	NetMHC	9.55	22.58	2.364	327	0.22	25.078	36.449	1.453	22.58	9.55	31.2	10.7	41.69749833	39.45572246	59.19022625	53.85797247	M6	1.285714286	1.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.219	327	0	0	NA	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	104553663	104553663	T	C	ENSMUST00000216904.1	5	ENSMUSG00000073928	missense	I/T	248	Olfr651	ENSMUST00000216904.1:c.743T>C	ENSMUSP00000150776.1:p.Ile248Thr	H-2-Kb	9	10	2	VTLMFYTPA	VILMFYTPA	NetMHC	14.99	17.47	1.165	203	0.232	56.633	69.028	1.219	17.47	14.99	57.1	24.5	89.55915762	106.1964502	80.95617863	88.76668471	M6	0.957142857	1.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.236	203	0	0	NA	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	86269480	86269480	A	G	ENSMUST00000217724.1	5	ENSMUSG00000057540	missense	L/S	103	Olfr310	ENSMUST00000217724.1:c.308T>C	ENSMUSP00000151989.1:p.Leu103Ser	H-2-Kb	9	8	4	FSFSFCACV	FSFLFCACV	NetMHC	21.87	27.03	1.236	326	0.224	92.895	118.99	1.281	27.03	21.87	164.9	64.7	123.6260519	121.0904798	114.3536418	131.9015807	M6	2.257142857	2.257142857	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.23	326	0	0	NA	7qD3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	108066532	108066532	T	C	ENSMUST00000071658.2	NA	ENSMUSG00000063120	missense	M/V	89	Olfr480	ENSMUST00000071658.2:c.265A>G	ENSMUSP00000071583.2:p.Met89Val	H-2-Kb	9	10	2	PVYLFLSHL	PMYLFLSHL	SMM	27.74	12.797	0.461	253	0.024	31.825	25.891	0.814	28.38	30.85	39.4	32.8	12.79705392	27.74022632	23.40183969	47.56089297	M6	1.271428571	1.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.03	253	0	0	NA	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.16094284	sgMsh2	cell line
chr7	104636454	104636454	T	C	ENSMUST00000215454.2	5	ENSMUSG00000073923	missense	V/A	260	Olfr657	ENSMUST00000215454.2:c.779T>C	ENSMUSP00000150070.1:p.Val260Ala	H-2-Kb	9	4	8	LILFFYTAV	LILFFYTVV	NetMHC	50.71	214.25	4.225	331	0.215	95.984	175.371	1.827	214.25	50.71	256.3	101.2	136.4928808	96.8523137	117.8284053	95.11521633	M6	1.914285714	2.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.213	331	0	0	NA	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	102804243	102804243	T	C	ENSMUST00000061096.6	NA	ENSMUSG00000048469	missense	I/T	255	Olfr564	ENSMUST00000061096.6:c.764T>C	ENSMUSP00000129376.1:p.Ile255Thr	H-2-Kb	9	8	4	VFYTPLISL	VFYIPLISL	NetMHC	89.79	84.86	0.945	327	0.22	100.968	103.132	1.021	84.86	89.79	198.8	102.6	85.13536455	99.3367621	121.129521	141.6609011	M6	1.1	1.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.219	327	0	0	NA	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	86230157	86230157	G	T	ENSMUST00000165771.1	5	ENSMUSG00000091239	missense	L/I	312	Vmn2r76	ENSMUST00000165771.1:c.934C>A	ENSMUSP00000127309.1:p.Leu312Ile	H-2-Kb	9	11	1	IFNSFHGTL	LFNSFHGTL	NetMHC	90.6	323.06	3.566	144	0.049	213.074	517.132	2.427	323.06	90.6	536.4	171.4	497.86317	254.7475407	565.2622723	289.2344371	M6	-0.285714286	0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.054	144	0	0	NA	7qD3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.289697112	sgMsh2	cell line
chr7	86695231	86695231	TA	T	ENSMUST00000080165.4	2	ENSMUSG00000060688	FS	L/X	258	Olfr292	ENSMUST00000080165.4:c.777del	ENSMUSP00000079060.3:p.Lys259AsnfsTer8	H-2-Kb	9	5	8	SGAYVYLNL	SGAYVYLKP	NetMHCpan	70.7	14371.7	203.277	199	0.181	383.983	10270.6	26.748	20568.75	128.07	14371.7	70.7	4467.967444	639.8968908	6169.500447	706.7242604	M6	1.071428571	1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.179	199	0	0	NA	7qD3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.960292277	sgMsh2	cell line
chr7	80082188	80082188	A	T	ENSMUST00000164056.8	1	ENSMUSG00000048897	missense	H/L	371	Zfp710	ENSMUST00000164056.8:c.1112A>T	ENSMUSP00000132361.2:p.His371Leu	H-2-Kb	9	6	6	SHLKRLMLL	SHLKRHMLL	NetMHC	135.38	88.46	0.653	76	0.224	224.071	227.686	1.016	88.46	135.38	187.3	204.3	272.9669078	243.8428356	268.0711022	278.7725451	M6	1.242857143	1.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.215	76	32	5	0.15625	7qD2	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	104939177	104939177	C	T	ENSMUST00000214260.1	5	ENSMUSG00000073916	missense	S/F	217	Olfr669	ENSMUST00000214260.1:c.650C>T	ENSMUSP00000150928.1:p.Ser217Phe	H-2-Kb	9	9	3	CIFVSYTMI	CISVSYTMI	NetMHC	149.05	2150.19	14.426	253	0.202	170.35	2223.83	13.054	2150.19	149.05	3023.9	157	1718.343562	183.7003569	2297.470798	265.0025177	M6	1.514285714	1.6	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.204	253	0	0	NA	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	85222219	85222219	T	C	ENSMUST00000061074.9	5	ENSMUSG00000096861	missense	S/G	619	Vmn2r68	ENSMUST00000061074.9:c.1855A>G	ENSMUSP00000129411.1:p.Ser619Gly	H-2-Kb	9	10	2	LGYVLLISL	LSYVLLISL	NetMHC	167.43	52.29	0.312	280	0.239	225.284	86.926	0.386	52.29	167.43	102	217.7	81.11664876	232.8681001	92.73635031	245.6122367	M6	2.571428571	2.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.237	280	0	0	NA	7qD3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	108031681	108031681	A	G	ENSMUST00000210173.2	3	ENSMUSG00000094426	missense	Y/H	221	Olfr478	ENSMUST00000210173.2:c.661T>C	ENSMUSP00000147713.1:p.Tyr221His	H-2-Kb	9	7	5	IAISHIYIL	IAISYIYIL	NetMHCpan	89.6	39.6	0.442	402	0.037	172.099	112.772	0.655	92.77	178.58	39.6	89.6	132.7730709	165.6189397	178.3405083	224.0010221	M6	1.714285714	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.038	402	0	0	NA	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.20386093	sgMsh2	cell line
chr7	102804243	102804243	T	C	ENSMUST00000061096.6	NA	ENSMUSG00000048469	missense	I/T	255	Olfr564	ENSMUST00000061096.6:c.764T>C	ENSMUSP00000129376.1:p.Ile255Thr	H-2-Kb	9	6	6	VAVFYTPLI	VAVFYIPLI	NetMHCpan	95.1	97.3	1.023	327	0.22	190.906	181.259	0.949	176.63	183.61	97.3	95.1	196.3857628	198.2028979	185.8874201	201.9528563	M6	1.671428571	1.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.219	327	0	0	NA	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	66784798	66784798	T	C	ENSMUST00000066475.10	1	ENSMUSG00000030510	missense	W/R	216	Cers3	ENSMUST00000066475.10:c.646T>C	ENSMUSP00000069238.8:p.Trp216Arg	H-2-Kb	9	8	4	SQYRYYILE	SQYWYYILE	SMM	92.493	70.325	0.76	362	0.039	160.502	195.895	1.221	314.3	217.43	396.3	364.7	70.32504197	92.49324152	77.49077422	103.5738214	M6	-0.514285714	-0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.033	362	4	2	0.5	7qC	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.177037124	sgMsh2	cell line
chr7	104129212	104129212	T	G	ENSMUST00000053743.5	NA	ENSMUSG00000055643	missense	D/A	135	Ubqln5	ENSMUST00000053743.5:c.404A>C	ENSMUSP00000062054.4:p.Asp135Ala	H-2-Kb	9	9	3	LAAFFSQRV	LADFFSQRV	NetMHC	301.17	814.66	2.705	68	0.265	456.1	914.063	2.004	814.66	301.17	2680.4	469.5	843.5483883	442.7004873	984.5777112	609.8878759	M6	0.4	1.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.271	68	0	0	NA	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr7	80082188	80082188	A	T	ENSMUST00000164056.8	1	ENSMUSG00000048897	missense	H/L	371	Zfp710	ENSMUST00000164056.8:c.1112A>T	ENSMUSP00000132361.2:p.His371Leu	H-2-Kb	9	5	7	TSHLKRLML	TSHLKRHML	NetMHC	308.14	679.21	2.204	76	0.224	353.74	578.981	1.637	679.21	308.14	1396.6	945.4	478.7513372	370.7746213	450.0388435	336.7053368	M6	0.242857143	0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.215	76	32	5	0.15625	7qD2	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	104939177	104939177	C	T	ENSMUST00000214260.1	5	ENSMUSG00000073916	missense	S/F	217	Olfr669	ENSMUST00000214260.1:c.650C>T	ENSMUSP00000150928.1:p.Ser217Phe	H-2-Kb	9	10	2	IFVSYTMIL	ISVSYTMIL	NetMHCpan	247.3	36.2	0.146	253	0.202	301.603	100.437	0.333	44.88	314.73	36.2	247.3	155.9947563	288.4762076	197.3558481	396.5062159	M6	1.657142857	1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.204	253	0	0	NA	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	104636454	104636454	T	C	ENSMUST00000215454.2	5	ENSMUSG00000073923	missense	V/A	260	Olfr657	ENSMUST00000215454.2:c.779T>C	ENSMUSP00000150070.1:p.Val260Ala	H-2-Kb	9	5	7	ILFFYTAVV	ILFFYTVVV	NetMHCpan	79.8	372.6	4.669	331	0.215	297.047	469.491	1.581	1148.93	335.72	372.6	79.8	566.3827268	392.7443988	350.1466697	258.3747087	M6	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.213	331	0	0	NA	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	104129212	104129212	T	G	ENSMUST00000053743.5	NA	ENSMUSG00000055643	missense	D/A	135	Ubqln5	ENSMUST00000053743.5:c.404A>C	ENSMUSP00000062054.4:p.Asp135Ala	H-2-Kb	9	11	1	AFFSQRVQL	DFFSQRVQL	NetMHC	340.85	1973.1	5.789	68	0.265	466.858	1824.504	3.908	1973.1	340.85	3384.1	498.6	1309.51356	464.6329446	1675.907328	469.0833305	M6	-0.214285714	0.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.271	68	0	0	NA	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr7	103328734	103328734	A	G	ENSMUST00000214765.2	5	ENSMUSG00000073951	missense	I/V	83	Olfr598	ENSMUST00000214765.2:c.247A>G	ENSMUSP00000149199.1:p.Ile83Val	H-2-Kb	9	11	1	VAPKMLAIF	IAPKMLAIF	SMM	313.408	461.434	1.472	486	0.167	428.113	513.348	1.199	600.96	490.57	431.2	429.4	461.4344339	313.4079437	565.2622723	426.8251484	M6	1.328571429	1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.167	486	0	0	NA	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.895915141	sgMsh2	cell line
chr7	86363962	86363962	C	T	ENSMUST00000213255.1	5	ENSMUSG00000055571	missense	C/Y	125	Olfr305	ENSMUST00000213255.1:c.374G>A	ENSMUSP00000149762.1:p.Cys125Tyr	H-2-Kb	9	11	1	YSPLHYEVI	CSPLHYEVI	NetMHCpan	404.5	585.8	1.448	178	0.028	498.901	575.531	1.154	767.77	594.83	585.8	404.5	485.4114317	529.7976163	565.2622723	468.0044688	M6	0.414285714	0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.035	178	0	0	NA	7qD3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.187766646	sgMsh2	cell line
chr7	112894450	112894450	T	A	ENSMUST00000059768.16	1	ENSMUSG00000055320	missense	F/I	395	Tead1	ENSMUST00000059768.16:c.1183T>A	ENSMUSP00000060671.9:p.Phe395Ile	H-2-Db	9	6	6	SVLENITIL	SVLENFTIL	NetMHCpan	36.9	25.6	0.694	92	0.239	88.888	86.275	0.971	63.25	52.86	25.6	36.9	109.2999592	124.9165554	142.7479894	157.6050032	M6	1.271428571	1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.253	92	63	6	0.095238095	7qF1	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr8	13576361	13576361	T	C	ENSMUST00000117551.3	1	ENSMUSG00000031453	missense	M/V	741	Rasa3	ENSMUST00000117551.3:c.2221A>G	ENSMUSP00000112998.2:p.Met741Val	H-2-Db	9	4	8	YSLFNLYVG	YSLFNLYMG	NetMHC	87.93	363.82	4.138	157	0.032	182.548	418.279	2.291	363.82	87.93	556	201.2	472.737441	298.2771604	313.0184957	163.896621	M6	1.342857143	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.035	157	133	2	0.015037594	8qA1.1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.187766646	sgMsh2	cell line
chr7	108565457	108565457	A	G	ENSMUST00000075595.2	NA	ENSMUSG00000060105	missense	F/L	113	Olfr504	ENSMUST00000075595.2:c.337T>C	ENSMUSP00000075025.1:p.Phe113Leu	H-2-Db	9	6	6	YAIHCLVSM	YAIHCFVSM	NetMHC	93.71	107.99	1.152	234	0.214	321.339	304.71	0.948	107.99	93.71	252.5	306.5	430.1500721	391.3992598	356.9192732	336.1785503	M6	1.842857143	1.842857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.223	234	0	0	NA	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	119801262	119801262	A	G	ENSMUST00000033218.14	1	ENSMUSG00000030924	missense	N/S	90	Rexo5	ENSMUST00000033218.14:c.269A>G	ENSMUSP00000033218.8:p.Asn90Ser	H-2-Db	9	8	4	KQLSNVVVF	KQLNNVVVF	NetMHC	115.13	389.53	3.383	96	0.156	301.366	448.126	1.487	389.53	115.13	404.7	237.5	554.1406375	423.2724481	491.5526027	365.2329911	M6	2.128571429	2.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.172	96	9	0	0	7qF2	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.922738948	sgMsh2	cell line
chr7	119801262	119801262	A	G	ENSMUST00000033218.14	1	ENSMUSG00000030924	missense	N/S	90	Rexo5	ENSMUST00000033218.14:c.269A>G	ENSMUSP00000033218.8:p.Asn90Ser	H-2-Db	10	8	4	KQLSNVVVFI	KQLNNVVVFI	NetMHC	57.06	174.67	3.061	96	0.156	411.754	445.149	1.081	174.67	57.06	313.2	174.5	577.0985724	649.007925	876.3346825	949.882748	M6	2.228571429	2.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.172	96	9	0	0	7qF2	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.922738948	sgMsh2	cell line
chr7	108755711	108755711	A	G	ENSMUST00000214670.1	5	ENSMUSG00000051200	missense	N/S	285	Olfr513	ENSMUST00000214670.1:c.854A>G	ENSMUSP00000149440.1:p.Asn285Ser	H-2-Kb	8	6	6	VIPMLSPL	VIPMLNPL	NetMHC	16.15	38.51	2.385	150	0.047	69.634	131.561	1.889	38.51	16.15	125.8	54.4	137.3219621	84.86722465	152.3140619	88.25513833	M6	1.428571429	1.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.051	150	0	0	NA	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.273602828	sgMsh2	cell line
chr7	120139766	120139766	T	G	ENSMUST00000033207.5	1	ENSMUSG00000030911	missense	Q/H	199	Zp2	ENSMUST00000033207.5:c.597A>C	ENSMUSP00000033207.4:p.Gln199His	H-2-Kb	8	9	3	IVHGFNLL	IVQGFNLL	NetMHCpan	35.1	96.2	2.741	133	0.226	71.965	111.009	1.543	76.52	44.45	96.2	35.1	125.8171954	109.8348092	145.794117	99.48096742	M6	1.071428571	1.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.221	133	0	0	NA	7qF2	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	119801285	119801285	A	C	ENSMUST00000033218.14	1	ENSMUSG00000030924	missense	K/Q	98	Rexo5	ENSMUST00000033218.14:c.292A>C	ENSMUSP00000033218.8:p.Lys98Gln	H-2-Kb	8	6	6	VVFILQGM	VVFILKGM	NetMHCpan	32.8	53.9	1.643	109	0.165	108.167	169.285	1.565	113.28	47.78	53.9	32.8	250.4609364	168.5543635	225.2890066	188.2521739	M6	1.9	2.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.175	109	9	0	0	7qF2	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.938833232	sgMsh2	cell line
chr8	15027907	15027907	G	T	ENSMUST00000069399.6	1	ENSMUSG00000055675	missense	D/Y	169	Kbtbd11	ENSMUST00000069399.6:c.505G>T	ENSMUSP00000068321.5:p.Asp169Tyr	H-2-Kb	8	9	3	RSYYFRAR	RSDYFRAR	SMM	74.257	2408.463	32.434	39	0.231	105.364	8423.468	79.947	13989.82	89.74	13235	429	2408.463117	74.25744462	3611.935614	120.9873599	M6	-1.114285714	-1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.236	39	5	1	0.2	8qA1.1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr7	127905762	127905762	T	C	ENSMUST00000071056.13	1	ENSMUSG00000030802	missense	I/T	130	Bckdk	ENSMUST00000071056.13:c.389T>C	ENSMUSP00000070345.7:p.Ile130Thr	H-2-Kb	8	10	2	YTRAFQKL	YIRAFQKL	NetMHCpan	121.7	137.9	1.133	204	0.025	139.122	142.352	1.023	95.73	131.44	137.9	121.7	146.8047136	146.8047136	188.2521739	180.6092545	M6	-0.6	-0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.033	204	241	7	0.029045643	7qF3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.177037124	sgMsh2	cell line
chr7	143764865	143764865	A	G	ENSMUST00000058092.7	1	ENSMUSG00000050276	missense	V/A	170	Mrgprg	ENSMUST00000058092.7:c.509T>C	ENSMUSP00000060411.6:p.Val170Ala	H-2-Kb	8	5	7	SVTWLAAL	SVTWLAVL	NetMHC	159.87	1117.42	6.99	150	0.173	214.27	627.213	2.927	1117.42	159.87	483.5	188.8	564.598864	239.7397234	689.8267002	306.71852	M6	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.194	150	0	0	NA	7qF5	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	139511443	139511443	TA	T	ENSMUST00000026550.13	1	ENSMUSG00000025477	FS	L/X	114	Inpp5a	ENSMUST00000026550.13:c.347del	ENSMUSP00000026550.7:p.Asn116ThrfsTer66	H-2-Kb	8	47	0	SSHRTTFL	NA	SMMPMBEC	279.731	NA	NA	148	0.216	346.663	NA	NA	NA	383.77	NA	829.5	NA	309.5565516	NA	279.7306149	M6	-0.471428571	-0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.241	148	57	1	0.01754386	7qF4	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	133721362	133721362	T	C	ENSMUST00000033290.11	1	ENSMUSG00000030986	missense	N/D	708	Dhx32	ENSMUST00000033290.11:c.2122A>G	ENSMUSP00000033290.5:p.Asn708Asp	H-2-Kb	8	5	7	PQYYFSDL	PQYYFSNL	SMM	381.716	59.257	0.155	97	0.155	426.377	54.129	0.127	23.37	432.28	49	468.5	59.2570463	381.7156799	70.10354824	420.4748265	M6	-0.542857143	-0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.163	97	226	46	0.203539823	7qF3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.874456096	sgMsh2	cell line
chr7	144595572	144595572	T	C	ENSMUST00000121758.7	1	ENSMUSG00000031075	missense	M/V	851	Ano1	ENSMUST00000121758.7:c.2551A>G	ENSMUSP00000112616.2:p.Met851Val	H-2-Kb	8	6	6	LVYLYVYS	LVYLYMYS	SMM	111.877	86.445	0.773	146	0.034	452.351	193.098	0.427	274.32	779.75	666	956.6	86.44502416	111.8767908	111.8767908	124.9510759	M6	1.071428571	1.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.038	146	456	12	0.026315789	7qF5	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.20386093	sgMsh2	cell line
chr8	15027907	15027907	G	T	ENSMUST00000069399.6	1	ENSMUSG00000055675	missense	D/Y	169	Kbtbd11	ENSMUST00000069399.6:c.505G>T	ENSMUSP00000068321.5:p.Asp169Tyr	H-2-Kb	9	9	3	RSYYFRARA	RSDYFRARA	NetMHC	11.71	2430.72	207.576	39	0.231	157.07	3580.1	22.793	2430.72	11.71	4072.4	41.8	3785.384504	272.3391013	3374.815227	274.9476424	M6	-0.742857143	-0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.236	39	5	1	0.2	8qA1.1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr7	143764865	143764865	A	G	ENSMUST00000058092.7	1	ENSMUSG00000050276	missense	V/A	170	Mrgprg	ENSMUST00000058092.7:c.509T>C	ENSMUSP00000060411.6:p.Val170Ala	H-2-Kb	9	4	8	TSVTWLAAL	TSVTWLAVL	NetMHC	23.2	97.58	4.206	150	0.173	112.97	169.914	1.504	97.58	23.2	118.9	47.6	317.0370367	224.9624328	220.9276129	178.3405083	M6	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.194	150	0	0	NA	7qF5	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr7	108755711	108755711	A	G	ENSMUST00000214670.1	5	ENSMUSG00000051200	missense	N/S	285	Olfr513	ENSMUST00000214670.1:c.854A>G	ENSMUSP00000149440.1:p.Asn285Ser	H-2-Kb	9	5	7	LVIPMLSPL	LVIPMLNPL	NetMHCpan	136.3	272.5	1.999	150	0.047	191.537	274.23	1.432	275.96	153.93	272.5	136.3	262.4883301	229.1447967	329.0409876	273.0549161	M6	1.428571429	2.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.051	150	0	0	NA	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.273602828	sgMsh2	cell line
chr7	108466294	108466294	C	A	ENSMUST00000217616.2	NA	ENSMUSG00000096679	missense	H/Q	323	Olfr498	ENSMUST00000217616.2:c.969C>A	ENSMUSP00000150971.1:p.His323Gln	H-2-Kb	9	13	2	TQYNHNYPV	THYNHNYPV	NetMHCpan	244.2	296.1	1.213	298	0.188	335.309	309.144	0.922	322.41	309	296.1	244.2	322.1884741	416.0159675	273.0549161	361.6179668	M6	-1.457142857	-1.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.187	298	0	0	NA	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr8	15027907	15027907	G	T	ENSMUST00000069399.6	1	ENSMUSG00000055675	missense	D/Y	169	Kbtbd11	ENSMUST00000069399.6:c.505G>T	ENSMUSP00000068321.5:p.Asp169Tyr	H-2-Kb	9	7	5	AARSYYFRA	AARSDYFRA	NetMHC	339.41	8461.75	24.931	39	0.231	377.643	5794.815	15.345	8461.75	339.41	8550.5	375	3098.203926	380.2857045	3127.879401	444.8872915	M6	-1.114285714	-0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.236	39	5	1	0.2	8qA1.1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr7	108317521	108317521	T	C	ENSMUST00000214605.1	2	ENSMUSG00000094612	missense	V/A	209	Olfr491	ENSMUST00000214605.1:c.626T>C	ENSMUSP00000150694.1:p.Val209Ala	H-2-Kb	9	10	2	VATVFVISV	VVTVFVISV	NetMHC	342.27	467.62	1.366	388	0.034	395.11	553.012	1.4	467.62	342.27	735.6	356.6	487.6519891	433.6206938	618.3722614	534.872168	M6	2.628571429	3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.036	388	0	0	NA	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.193131408	sgMsh2	cell line
chr8	13405551	13405551	T	G	ENSMUST00000033827.7	1	ENSMUSG00000031450	missense	L/R	145	Grk1	ENSMUST00000033827.7:c.434T>G	ENSMUSP00000033827.7:p.Leu145Arg	H-2-Kb	9	7	5	SQDGRFQPL	SQDGLFQPL	SMMPMBEC	354.201	948.965	2.679	133	0.06	391.454	1089.017	2.782	1229.07	417.22	2061.8	1199.2	905.9620379	365.6874028	948.964574	354.201177	M6	-0.985714286	-0.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.069	133	0	0	NA	8qA1.1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.370168531	sgMsh2	cell line
chr8	88308681	88308681	T	G	ENSMUST00000171456.8	1	ENSMUSG00000031659	missense	L/R	71	Adcy7	ENSMUST00000171456.8:c.212T>G	ENSMUSP00000132528.1:p.Leu71Arg	H-2-Kb	8	8	4	TAFRMLTL	TAFLMLTL	NetMHCpan	29.4	51.9	1.765	135	0.207	80.349	113.425	1.412	108.07	64.15	51.9	29.4	118.7790917	97.44061133	118.7790917	96.54727043	M6	1.271428571	1.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.207	135	0	0	NA	8qC3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr8	91096777	91096777	A	C	ENSMUST00000034091.7	1	ENSMUSG00000031666	missense	K/N	487	Rbl2	ENSMUST00000034091.7:c.1461A>C	ENSMUSP00000034091.7:p.Lys487Asn	H-2-Kb	8	11	1	NHFRFAEM	KHFRFAEM	NetMHC	86.94	15.02	0.173	130	0.131	143.663	41.161	0.287	15.02	86.94	27.4	128.2	55.42937734	166.241711	54.92119775	159.1255801	M6	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.15	130	81	12	0.148148148	8qC4	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.804714199	sgMsh2	cell line
chr8	91087019	91087019	A	T	ENSMUST00000034091.7	1	ENSMUSG00000031666	missense	L/F	340	Rbl2	ENSMUST00000034091.7:c.1020A>T	ENSMUSP00000034091.7:p.Leu340Phe	H-2-Kb	8	9	3	YVFAAGNL	YVLAAGNL	NetMHCpan	70.5	600.1	8.512	111	0.18	98.87	545.923	5.522	778.93	93.33	600.1	70.5	436.2545806	104.4094962	491.7450535	113.6946424	M6	1.5	1.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.188	111	81	11	0.135802469	8qC4	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr8	56110553	56110553	A	G	ENSMUST00000000275.8	1	ENSMUSG00000038257	missense	K/R	361	Glra3	ENSMUST00000000275.8:c.1082A>G	ENSMUSP00000000275.7:p.Lys361Arg	H-2-Kb	8	6	6	VSRQHREL	VSRQHKEL	SMM	69.621	143.794	2.065	250	0.028	100.959	250.036	2.477	322.76	105.37	1502.7	872.9	143.7937467	69.6209588	177.3127641	96.54727043	M6	-2.314285714	-2.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.027	250	0	0	NA	8qB2	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.144848556	sgMsh2	cell line
chr8	83573085	83573085	A	G	ENSMUST00000019382.16	1	ENSMUSG00000031708	missense	V/A	109	Tecr	ENSMUST00000019382.16:c.326T>C	ENSMUSP00000019382.9:p.Val109Ala	H-2-Kb	8	6	6	LFYFRAPF	LFYFRVPF	NetMHCpan	137.5	354.9	2.581	44	0.295	392.858	1090.355	2.775	463.83	190.41	354.9	137.5	2375.417764	821.7505435	1716.880231	595.3056439	M6	0.4	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.275	44	483	107	0.221532091	8qC2	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr8	84090184	84090184	A	G	ENSMUST00000005600.5	1	ENSMUSG00000031706	missense	Y/C	448	Rfx1	ENSMUST00000005600.5:c.1343A>G	ENSMUSP00000005600.5:p.Tyr448Cys	H-2-Kb	8	6	6	TLYCHCLL	TLYCHYLL	NetMHCpan	80.9	40	0.494	72	0.125	162.666	120.547	0.741	127.4	230.66	40	80.9	113.6946424	154.4329616	132.0504848	170.8991883	M6	1.7	1.7	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.147	72	14	2	0.142857143	8qC2	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.788619915	sgMsh2	cell line
chr8	66704576	66704576	T	G	ENSMUST00000039303.6	1	ENSMUSG00000036437	missense	V/G	216	Npy1r	ENSMUST00000039303.6:c.647T>G	ENSMUSP00000045530.5:p.Val216Gly	H-2-Kb	8	11	1	GLQYFGPL	VLQYFGPL	NetMHC	232.2	21.27	0.092	133	0.158	412.807	40.168	0.097	21.27	232.2	29.9	298.7	51.72970479	827.4466462	50.43592613	526.9143181	M6	0.514285714	0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.155	133	0	0	NA	8qB3.1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.831538005	sgMsh2	cell line
chr8	88308681	88308681	T	G	ENSMUST00000171456.8	1	ENSMUSG00000031659	missense	L/R	71	Adcy7	ENSMUST00000171456.8:c.212T>G	ENSMUSP00000132528.1:p.Leu71Arg	H-2-Kb	8	6	6	LGTAFRML	LGTAFLML	NetMHC	239.18	645.82	2.7	135	0.207	277.583	372.362	1.341	645.82	239.18	297.2	304.6	360.3628392	270.2340064	384.3616066	284.9311953	M6	0.671428571	0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.207	135	0	0	NA	8qC3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr8	83725234	83725234	A	G	ENSMUST00000075843.12	1	ENSMUSG00000002885	missense	M/T	563	Adgre5	ENSMUST00000075843.12:c.1688T>C	ENSMUSP00000075240.6:p.Met563Thr	H-2-Kb	8	7	5	SSRTTVHL	SSRTMVHL	SMMPMBEC	310.27	134.196	0.433	152	0.046	344.132	130.589	0.379	73.79	367.09	280.6	1261.9	126.9813676	321.1737185	134.1961326	310.2701531	M6	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.057	152	148	6	0.040540541	8qC2	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.305791395	sgMsh2	cell line
chr8	60933131	60933131	A	G	ENSMUST00000004430.13	1	ENSMUSG00000004319	missense	F/L	296	Clcn3	ENSMUST00000004430.13:c.886T>C	ENSMUSP00000004430.7:p.Phe296Leu	H-2-Kb	8	11	1	LSYLFPKY	FSYLFPKY	SMMPMBEC	193.526	164.718	0.851	150	0.327	405.461	373.119	0.92	488.76	453.04	564.3	542.4	257.4779247	357.8821189	164.7175978	193.5263029	M6	-0.328571429	0.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.315	150	33	11	0.333333333	8qB3.1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr8	53587238	53587238	A	T	ENSMUST00000047768.10	1	ENSMUSG00000039396	missense	N/K	576	Neil3	ENSMUST00000047768.10:c.1728T>A	ENSMUSP00000041909.4:p.Asn576Lys	H-2-Kb	8	10	2	KKFFVCPL	KNFFVCPL	SMM	299.047	60.777	0.203	119	0.328	453.597	69.627	0.153	97.25	1737.39	18	546	60.77710368	299.0473787	78.47656766	361.1935614	M6	1.514285714	1.514285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.328	119	11	7	0.636363636	8qB1.3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr8	66704576	66704576	T	G	ENSMUST00000039303.6	1	ENSMUSG00000036437	missense	V/G	216	Npy1r	ENSMUST00000039303.6:c.647T>G	ENSMUSP00000045530.5:p.Val216Gly	H-2-Kb	9	10	2	LGLQYFGPL	LVLQYFGPL	NetMHC	9.41	10.49	1.115	133	0.158	60.128	37.163	0.618	10.49	9.41	15	12.3	74.83590241	157.438158	59.32667381	107.9567993	M6	0.514285714	0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.155	133	0	0	NA	8qB3.1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.831538005	sgMsh2	cell line
chr8	44953091	44953091	T	G	ENSMUST00000191428.6	5	ENSMUSG00000070047	missense	S/A	960	Fat1	ENSMUST00000191428.6:c.2878T>G	ENSMUSP00000140596.1:p.Ser960Ala	H-2-Kb	9	11	1	ASQVRYSLL	SSQVRYSLL	NetMHC	15.12	8.94	0.591	216	0.032	71.23	43.741	0.614	8.94	15.12	42.7	73.1	44.78267173	69.36014622	58.10988286	79.47856184	M6	0.242857143	0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.041	216	334	6	0.017964072	8qB1.1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.219955214	sgMsh2	cell line
chr8	64968763	64968763	T	A	ENSMUST00000026595.12	1	ENSMUSG00000025521	missense	Y/N	244	Tmem192	ENSMUST00000026595.12:c.730T>A	ENSMUSP00000026595.5:p.Tyr244Asn	H-2-Kb	9	10	2	VNLKRHNAL	VYLKRHNAL	NetMHC	34.04	134.06	3.938	193	0.187	64.478	127.715	1.981	134.06	34.04	385.2	63	121.3696222	69.04146529	115.1463034	65.95534555	M6	-0.814285714	-0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.194	193	56	7	0.125	8qB3.1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr8	71461477	71461477	A	G	ENSMUST00000008094.9	1	ENSMUSG00000007950	missense	V/A	169	Abhd8	ENSMUST00000008094.9:c.506T>C	ENSMUSP00000008094.8:p.Val169Ala	H-2-Kb	9	10	2	VALFFIHGV	VVLFFIHGV	NetMHCpan	51	110.7	2.171	94	0.138	130.445	161.051	1.235	106.1	72.91	110.7	51	211.4024421	187.9792879	261.3665468	226.073678	M6	2.071428571	2.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.153	94	27	3	0.111111111	8qB3.3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.820808483	sgMsh2	cell line
chr8	104954091	104954091	A	G	ENSMUST00000076384.5	1	ENSMUSG00000062826	missense	N/S	495	Ces2f	ENSMUST00000076384.5:c.1484A>G	ENSMUSP00000075722.5:p.Asn495Ser	H-2-Kb	9	4	8	KMMKYWASF	KMMKYWANF	NetMHC	79.26	47.46	0.599	265	0.151	95.046	77.397	0.814	47.46	79.26	62.3	85.8	92.49324152	107.67379	92.73635031	104.2917608	M6	-0.057142857	-0.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.15	265	0	0	NA	8qD3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.804714199	sgMsh2	cell line
chr8	83668275	83668275	T	C	ENSMUST00000019608.6	1	ENSMUSG00000019464	missense	L/P	127	Ptger1	ENSMUST00000019608.6:c.380T>C	ENSMUSP00000019608.5:p.Leu127Pro	H-2-Kb	9	4	8	VFFGLCPPL	VFFGLCPLL	SMM	82.435	104.981	1.274	64	0.062	85.654	119.254	1.392	118.49	85.16	154.5	106.6	104.9808295	82.43468827	120.0189989	86.14895227	M6	1.328571429	2.014285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.086	64	19	5	0.263157895	8qC2	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.461369474	sgMsh2	cell line
chr8	83573085	83573085	A	G	ENSMUST00000019382.16	1	ENSMUSG00000031708	missense	V/A	109	Tecr	ENSMUST00000019382.16:c.326T>C	ENSMUSP00000019382.9:p.Val109Ala	H-2-Kb	9	5	7	LLFYFRAPF	LLFYFRVPF	NetMHCpan	61.1	204.7	3.35	44	0.295	140.778	257.224	1.827	369.34	101.98	204.7	61.1	271.0878168	187.9792879	243.3604501	179.5767056	M6	0.4	1.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.275	44	483	107	0.221532091	8qC2	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr8	88308681	88308681	T	G	ENSMUST00000171456.8	1	ENSMUSG00000031659	missense	L/R	71	Adcy7	ENSMUST00000171456.8:c.212T>G	ENSMUSP00000132528.1:p.Leu71Arg	H-2-Kb	9	8	4	TAFRMLTLF	TAFLMLTLF	NetMHCpan	130.1	292.7	2.25	135	0.207	139.907	123.623	0.884	121.28	130.84	292.7	130.1	101.8849414	148.9738357	125.9650316	169.531342	M6	1.414285714	1.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.207	135	0	0	NA	8qC3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr8	84090184	84090184	A	G	ENSMUST00000005600.5	1	ENSMUSG00000031706	missense	Y/C	448	Rfx1	ENSMUST00000005600.5:c.1343A>G	ENSMUSP00000005600.5:p.Tyr448Cys	H-2-Kb	9	5	7	STLYCHCLL	STLYCHYLL	NetMHC	169.86	124.11	0.731	72	0.125	350.723	303.594	0.866	124.11	169.86	249	294.9	358.1871488	406.5462879	417.1094219	428.7952838	M6	1.7	1.7	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.147	72	14	2	0.142857143	8qC2	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.788619915	sgMsh2	cell line
chr8	91096777	91096777	A	C	ENSMUST00000034091.7	1	ENSMUSG00000031666	missense	K/N	487	Rbl2	ENSMUST00000034091.7:c.1461A>C	ENSMUSP00000034091.7:p.Lys487Asn	H-2-Kb	9	10	2	NNHFRFAEM	NKHFRFAEM	NetMHC	229.62	1954.12	8.51	130	0.131	250.217	1579.731	6.313	1954.12	229.62	4212.7	309.8	1205.341196	256.5133662	1077.085055	243.9214539	M6	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.15	130	81	12	0.148148148	8qC4	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.804714199	sgMsh2	cell line
chr8	72002469	72002469	A	T	ENSMUST00000003574.4	1	ENSMUSG00000003484	missense	C/S	88	Cyp4f18	ENSMUST00000003574.4:c.262T>A	ENSMUSP00000003574.4:p.Cys88Ser	H-2-Kb	9	10	2	ASCWWVGPL	ACCWWVGPL	NetMHCpan	203.7	2136.6	10.489	68	0.191	285.435	2448.939	8.58	3889.69	231.83	2136.6	203.7	2761.277156	654.8020042	964.3840079	339.0392667	M6	0.957142857	0.957142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.185	68	0	0	NA	8qB3.3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.992480845	sgMsh2	cell line
chr8	83668425	83668425	A	G	ENSMUST00000019608.6	1	ENSMUSG00000019464	missense	H/R	177	Ptger1	ENSMUST00000019608.6:c.530A>G	ENSMUSP00000019608.5:p.His177Arg	H-2-Kb	9	4	8	VALLPLVRV	VALLPLVHV	NetMHC	257.84	301.42	1.169	93	0.14	379.784	418.959	1.103	301.42	257.84	963.4	1025.1	359.0128555	332.7438214	478.9056933	426.8251484	M6	1.957142857	2.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.151	93	29	4	0.137931034	8qC2	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.81007896	sgMsh2	cell line
chr8	88308681	88308681	T	G	ENSMUST00000171456.8	1	ENSMUSG00000031659	missense	L/R	71	Adcy7	ENSMUST00000171456.8:c.212T>G	ENSMUSP00000132528.1:p.Leu71Arg	H-2-Kb	9	11	1	RMLTLFVAL	LMLTLFVAL	NetMHCpan	133.8	233.9	1.748	135	0.207	236.285	189.074	0.8	243.12	268.08	233.9	133.8	144.2480663	244.4049514	122.5321348	228.165512	M6	2.785714286	2.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.207	135	0	0	NA	8qC3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr8	64968767	64968767	T	C	ENSMUST00000026595.12	1	ENSMUSG00000025521	missense	L/P	245	Tmem192	ENSMUST00000026595.12:c.734T>C	ENSMUSP00000026595.5:p.Leu245Pro	H-2-Kb	9	9	3	VYPKRHNAL	VYLKRHNAL	SMM	208.022	121.37	0.583	190	0.2	252.033	127.715	0.507	134.06	286.67	385.2	1208.2	121.3696222	208.0223508	115.1463034	217.3952246	M6	-1.585714286	-1.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.207	190	57	9	0.157894737	8qB3.1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr8	83368168	83368168	G	T	ENSMUST00000038692.5	1	ENSMUSG00000035057	missense	W/L	278	Mgat4d	ENSMUST00000038692.5:c.833G>T	ENSMUSP00000041629.5:p.Trp278Leu	H-2-Kb	9	11	1	LFFIEFSVL	WFFIEFSVL	NetMHCpan	181.7	616	3.39	155	0.129	206.5	409.13	1.981	504.13	333.75	616	181.7	314.1304236	213.3585248	280.0593007	199.6411211	M6	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.142	155	0	0	NA	8qC2	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.761796108	sgMsh2	cell line
chr8	83573085	83573085	A	G	ENSMUST00000019382.16	1	ENSMUSG00000031708	missense	V/A	109	Tecr	ENSMUST00000019382.16:c.326T>C	ENSMUSP00000019382.9:p.Val109Ala	H-2-Kb	9	3	9	IYLLFYFRA	IYLLFYFRV	SMM	176.649	44.27	0.251	44	0.295	265.748	61.295	0.231	70.32	351.09	272.6	828.8	44.27004873	176.6485187	52.2696991	180.405594	M6	1.314285714	2.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.275	44	483	107	0.221532091	8qC2	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr8	56110553	56110553	A	G	ENSMUST00000000275.8	1	ENSMUSG00000038257	missense	K/R	361	Glra3	ENSMUST00000000275.8:c.1082A>G	ENSMUSP00000000275.7:p.Lys361Arg	H-2-Kb	9	6	6	VSRQHRELL	VSRQHKELL	SMM	223.414	253.577	1.135	250	0.028	294.719	447.137	1.517	629.88	360.22	1230.8	842.1	253.577082	223.4138023	264.3930288	229.2186762	M6	-1.657142857	-1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.027	250	0	0	NA	8qB2	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.144848556	sgMsh2	cell line
chr8	86527358	86527358	TA	T	ENSMUST00000131423.7	5	ENSMUSG00000036872	FS	F/X	932	Abcc12	ENSMUST00000131423.7:c.2796del	ENSMUSP00000122402.1:p.Phe932LeufsTer8	H-2-Kb	9	8	4	QQFLWWCLF	NA	SMM	208.502	NA	NA	117	0.179	339.211	NA	NA	NA	364.19	NA	826.8	NA	208.5018919	NA	314.2317036	M6	1.985714286	1.985714286	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.168	117	0	0	NA	8qC3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.901279903	sgMsh2	cell line
chr8	91220227	91220227	G	A	ENSMUST00000047783.13	1	ENSMUSG00000033282	missense	H/Y	1249	Rpgrip1l	ENSMUST00000047783.13:c.3745C>T	ENSMUSP00000042702.7:p.His1249Tyr	H-2-Kb	9	5	7	VTVEALYAL	VTVEALHAL	NetMHCpan	344.5	439.4	1.275	211	0.199	475.124	773.172	1.627	789.32	381.25	439.4	344.5	757.0246132	568.9970306	962.1659863	803.9888022	M6	1.514285714	1.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.194	211	15	2	0.133333333	8qC4	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr8	83573085	83573085	A	G	ENSMUST00000019382.16	1	ENSMUSG00000031708	missense	V/A	109	Tecr	ENSMUST00000019382.16:c.326T>C	ENSMUSP00000019382.9:p.Val109Ala	H-2-Kb	9	6	6	LFYFRAPFI	LFYFRVPFI	SMMPMBEC	374.326	289.901	0.774	44	0.295	405.671	425.202	1.048	509.23	586.97	495.5	429.3	354.9032693	382.0410236	289.9011913	374.3260056	M6	0.642857143	0.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.275	44	483	107	0.221532091	8qC2	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr8	104954091	104954091	A	G	ENSMUST00000076384.5	1	ENSMUSG00000062826	missense	N/S	495	Ces2f	ENSMUST00000076384.5:c.1484A>G	ENSMUSP00000075722.5:p.Asn495Ser	H-2-Kb	9	10	2	ASFARYGNP	ANFARYGNP	SMM	123.058	130.951	1.064	265	0.151	497.296	611.771	1.23	1518.19	842.45	1054.4	872.8	130.951356	123.0580418	169.1414308	152.1423079	M6	-0.957142857	-0.085714286	FALSE	FALSE	TRUE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.15	265	0	0	NA	8qD3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.804714199	sgMsh2	cell line
chr8	60933131	60933131	A	G	ENSMUST00000004430.13	1	ENSMUSG00000004319	missense	F/L	296	Clcn3	ENSMUST00000004430.13:c.886T>C	ENSMUSP00000004430.7:p.Phe296Leu	H-2-Kb	9	11	1	LSYLFPKYS	FSYLFPKYS	SMM	242.164	248.949	1.028	150	0.327	478.777	542.536	1.133	1381.05	1260.21	550.2	491.7	248.9487787	242.1642333	534.872168	465.8541836	M6	-0.328571429	0.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.315	150	33	11	0.333333333	8qB3.1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr8	111688682	111688682	T	G	ENSMUST00000034435.6	1	ENSMUSG00000031957	missense	D/A	120	Ctrb1	ENSMUST00000034435.6:c.359A>C	ENSMUSP00000034435.5:p.Asp120Ala	H-2-Db	9	6	6	FTVRNAITL	FTVRNDITL	NetMHC	11.76	23.98	2.039	103	0.175	69.176	86.239	1.247	23.98	11.76	37.7	23.9	134.778308	114.4511076	138.2197172	117.9152565	M6	0.8	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.165	103	0	0	NA	8qE1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.885185619	sgMsh2	cell line
chr8	109551631	109551631	C	T	ENSMUST00000042601.8	1	ENSMUSG00000037993	missense	D/N	1138	Dhx38	ENSMUST00000042601.8:c.3412G>A	ENSMUSP00000047865.7:p.Asp1138Asn	H-2-Db	9	7	5	VTAVNGEWL	VTAVDGEWL	NetMHC	127.35	8821.39	69.269	157	0.032	384.136	9938.338	25.872	8821.39	127.35	6722.3	173.2	12723.89276	660.1156057	11055.28645	595.0726634	M6	0.214285714	0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.045	157	87	5	0.057471264	8qD3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.24141426	sgMsh2	cell line
chr9	18312832	18312832	A	T	ENSMUST00000001825.8	1	ENSMUSG00000001774	missense	T/S	303	Chordc1	ENSMUST00000001825.8:c.907A>T	ENSMUSP00000001825.7:p.Thr303Ser	H-2-Db	9	10	2	ISMRKAEPM	ITMRKAEPM	NetMHCpan	192.6	893.7	4.64	186	0.199	316.395	1499.69	4.74	1501.18	222	893.7	192.6	1620.391663	410.7901297	1498.200715	440.1188809	M6	-1.128571429	-0.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.206	186	216	53	0.24537037	9qA2	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	19921049	19921049	T	C	ENSMUST00000057596.9	1	ENSMUSG00000051118	missense	V/A	280	Olfr77	ENSMUST00000057596.9:c.839T>C	ENSMUSP00000058810.7:p.Val280Ala	H-2-Db	9	7	5	IMYTAVTPM	IMYTVVTPM	NetMHC	315.26	884.72	2.806	149	0.161	386.76	635.171	1.642	884.72	315.26	665.6	378.5	540.2813794	395.0208326	604.7418164	527.9222909	M6	0.514285714	1.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.169	149	0	0	NA	9qA3	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.906644664	sgMsh2	cell line
chr8	107052821	107052821	A	T	ENSMUST00000095517.11	1	ENSMUSG00000031916	missense	F/I	275	Cog8	ENSMUST00000095517.11:c.823T>A	ENSMUSP00000093173.5:p.Phe275Ile	H-2-Db	10	2	10	TAIPNDDPYI	TAIPNDDPYF	NetMHC	26.6	504.75	18.976	162	0.198	154.582	530.116	3.429	504.75	26.6	349.9	37.1	791.1339102	320.0737072	555.4820122	272.0633241	M6	-1.5	-0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.206	162	123	22	0.178861789	8qD3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	19921049	19921049	T	C	ENSMUST00000057596.9	1	ENSMUSG00000051118	missense	V/A	280	Olfr77	ENSMUST00000057596.9:c.839T>C	ENSMUSP00000058810.7:p.Val280Ala	H-2-Kb	8	5	7	TSIMYTAV	TSIMYTVV	NetMHC	11.61	60.48	5.209	149	0.161	34.958	85.921	2.458	60.48	11.61	48.7	20.4	140.8445349	59.80534499	111.3627636	49.51536674	M6	1.371428571	1.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.169	149	0	0	NA	9qA3	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.906644664	sgMsh2	cell line
chr8	111504457	111504457	A	G	ENSMUST00000034437.7	1	ENSMUSG00000031959	missense	Y/H	40	Wdr59	ENSMUST00000034437.7:c.118T>C	ENSMUSP00000034437.7:p.Tyr40His	H-2-Kb	8	5	7	SGRRFLHI	SGRRFLYI	NetMHC	86.4	125.88	1.457	192	0.151	194.02	184.068	0.949	125.88	86.4	157.4	170.4	210.7366151	220.6683258	223.738128	217.6406428	M6	-0.214285714	-0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.147	192	27	1	0.037037037	8qE1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.788619915	sgMsh2	cell line
chr8	124028933	124028933	T	C	ENSMUST00000034457.8	1	ENSMUSG00000031976	missense	Y/H	460	Urb2	ENSMUST00000034457.8:c.1378T>C	ENSMUSP00000034457.8:p.Tyr460His	H-2-Kb	8	7	5	VFQTHAKL	VFQTYAKL	SMM	70.915	18.312	0.258	252	0.024	106.19	20.473	0.193	16.15	114.49	51	301.1	18.31217795	70.91530907	22.63288934	97.89037676	M6	-0.414285714	-0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.031	252	71	3	0.042253521	8qE2	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.166307601	sgMsh2	cell line
chr9	18945178	18945178	CT	C	ENSMUST00000218385.1	5	ENSMUSG00000095957	FS	F/X	177	Olfr832	ENSMUST00000218385.1:c.535del	ENSMUSP00000151834.1:p.Cys179ValfsTer24	H-2-Kb	8	14	0	NWLIFSSL	NA	NetMHC	230.76	NA	NA	188	0.223	292.404	NA	NA	NA	230.76	NA	280.2	NA	318.9627742	NA	304.6070846	M6	1.771428571	1.771428571	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;Vardict	3	0.227	188	0	0	NA	9qA2	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	21036526	21036526	T	G	ENSMUST00000019616.5	1	ENSMUSG00000032174	missense	S/R	573	Icam5	ENSMUST00000019616.5:c.1719T>G	ENSMUSP00000019616.4:p.Ser573Arg	H-2-Kb	8	8	4	YGPRFEEL	YGPSFEEL	NetMHC	325.58	669.36	2.056	172	0.041	486.585	775.956	1.595	669.36	325.58	630.3	380.6	882.5513833	592.570463	965.4727043	637.88149	M6	-0.985714286	-0.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2	2	0.043	172	4	0	0	9qA3	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.230684737	sgMsh2	cell line
chr8	106131676	106131676	A	C	ENSMUST00000115979.8	1	ENSMUSG00000084128	missense	F/L	684	Esrp2	ENSMUST00000115979.8:c.2052T>G	ENSMUSP00000111639.2:p.Phe684Leu	H-2-Kb	8	9	3	SVLQAYQL	SVFQAYQL	NetMHCpan	279.8	34.1	0.122	145	0.234	297.844	56.276	0.189	45.45	340.13	34.1	279.8	67.10270075	280.3754606	72.90209351	315.3116375	M6	0.757142857	0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.247	145	101	13	0.128712871	8qD3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr8	111713461	111713461	T	A	ENSMUST00000166232.3	1	ENSMUSG00000031955	missense	S/C	634	Bcar1	ENSMUST00000166232.3:c.1900A>T	ENSMUSP00000129584.2:p.Ser634Cys	H-2-Kb	8	11	1	CSIQSRPL	SSIQSRPL	SMM	236.995	82.175	0.347	133	0.12	403.653	90.714	0.225	64.83	471.77	297.7	602.8	82.17505435	236.9954455	99.25216755	335.5366776	M6	-0.414285714	-0.414285714	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.11	133	212	41	0.193396226	8qE1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.590123746	sgMsh2	cell line
chr8	122813653	122813653	A	G	ENSMUST00000015160.5	5	ENSMUSG00000015016	missense	D/G	530	Acsf3	ENSMUST00000015160.5:c.1589A>G	ENSMUSP00000015160.5:p.Asp530Gly	H-2-Kb	8	5	7	HSLSHGGL	HSLSHGDL	SMMPMBEC	233.206	636.414	2.729	147	0.156	416.617	1748.884	4.198	2775.43	567.32	4133.4	1087.4	722.337231	265.9132635	636.4144033	233.2061504	M6	0.285714286	0.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.16	147	36	5	0.138888889	8qE1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.858361812	sgMsh2	cell line
chr9	4664969	4664969	C	CA	ENSMUST00000027020.12	5	ENSMUSG00000025892	FS	-/X	95-96	Gria4	ENSMUST00000027020.12:c.285dup	ENSMUSP00000027020.6:p.Gly96TrpfsTer4	H-2-Kb	8	7	6	VFAIFWTL	VFAIFGLY	SMM	69.781	2628.694	37.67	78	0.192	175.11	4715.847	26.931	7797.57	572.28	6803	236	2628.693795	69.78145169	2386.382195	114.219433	M6	2.014285714	2.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.201	78	0	0	NA	9qA1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr8	113775269	113775269	G	A	ENSMUST00000093113.4	1	ENSMUSG00000053399	missense	T/I	320	Adamts18	ENSMUST00000093113.4:c.959C>T	ENSMUSP00000090801.4:p.Thr320Ile	H-2-Kb	8	6	6	TTYILIVM	TTYILTVM	SMM	348.129	315.312	0.906	141	0.142	404.208	322.362	0.798	371.96	735.65	145.7	430.2	315.3116375	348.1288376	329.4124431	378.2160895	M6	2.414285714	2.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.149	141	0	0	NA	8qE1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.799349437	sgMsh2	cell line
chr9	18945178	18945178	CT	C	ENSMUST00000218385.1	5	ENSMUSG00000095957	FS	F/X	177	Olfr832	ENSMUST00000218385.1:c.535del	ENSMUSP00000151834.1:p.Cys179ValfsTer24	H-2-Kb	9	13	1	VNWLIFSSL	NA	NetMHCpan	13.8	NA	NA	188	0.223	37.802	NA	NA	NA	16.16	NA	13.8	NA	59.44427026	NA	61.69500447	M6	1.771428571	1.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.227	188	0	0	NA	9qA2	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr8	124028714	124028714	T	C	ENSMUST00000034457.8	1	ENSMUSG00000031976	missense	F/L	387	Urb2	ENSMUST00000034457.8:c.1159T>C	ENSMUSP00000034457.8:p.Phe387Leu	H-2-Kb	9	9	3	TQLHFYRRV	TQFHFYRRV	NetMHC	29.79	12.91	0.433	172	0.221	159.586	53.794	0.337	12.91	29.79	11.9	56.6	96.18558706	269.8422814	94.67820161	262.57296	M6	-0.385714286	-0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.214	172	57	10	0.175438596	8qE2	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	19921049	19921049	T	C	ENSMUST00000057596.9	1	ENSMUSG00000051118	missense	V/A	280	Olfr77	ENSMUST00000057596.9:c.839T>C	ENSMUSP00000058810.7:p.Val280Ala	H-2-Kb	9	7	5	IMYTAVTPM	IMYTVVTPM	NetMHCpan	21.8	29.2	1.339	149	0.161	55.223	74.818	1.355	54.52	34.57	29.2	21.8	107.1790739	75.87697352	95.11521633	84.77152578	M6	0.514285714	1.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.169	149	0	0	NA	9qA3	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.906644664	sgMsh2	cell line
chr8	124028933	124028933	T	C	ENSMUST00000034457.8	1	ENSMUSG00000031976	missense	Y/H	460	Urb2	ENSMUST00000034457.8:c.1378T>C	ENSMUSP00000034457.8:p.Tyr460His	H-2-Kb	9	6	6	TVFQTHAKL	TVFQTYAKL	NetMHC	42.12	10.72	0.255	252	0.024	141.749	43.932	0.31	10.72	42.12	14.2	48.4	86.71814915	303.4659719	73.66310144	235.0985768	M6	-0.414285714	0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.031	252	71	3	0.042253521	8qE2	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.166307601	sgMsh2	cell line
chr8	113775269	113775269	G	A	ENSMUST00000093113.4	1	ENSMUSG00000053399	missense	T/I	320	Adamts18	ENSMUST00000093113.4:c.959C>T	ENSMUSP00000090801.4:p.Thr320Ile	H-2-Kb	9	11	1	IVMNMVSSL	TVMNMVSSL	NetMHCpan	52.8	154	2.917	141	0.142	176.346	339.812	1.927	210.54	69.39	154	52.8	522.5285205	304.8667072	469.0833305	283.3022345	M6	0.957142857	1.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.149	141	0	0	NA	8qE1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.799349437	sgMsh2	cell line
chr8	109551631	109551631	C	T	ENSMUST00000042601.8	1	ENSMUSG00000037993	missense	D/N	1138	Dhx38	ENSMUST00000042601.8:c.3412G>A	ENSMUSP00000047865.7:p.Asp1138Asn	H-2-Kb	9	10	2	VNGEWLAEL	VDGEWLAEL	NetMHC	116.53	3630.39	31.154	157	0.032	130.917	2132.941	16.292	3630.39	116.53	5738.1	292.5	635.4918716	125.9244318	562.6651281	135.909558	M6	0.157142857	0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.045	157	87	5	0.057471264	8qD3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.24141426	sgMsh2	cell line
chr9	19318903	19318903	A	G	ENSMUST00000220268.1	5	ENSMUSG00000049229	missense	Y/C	129	Olfr844	ENSMUST00000220268.1:c.386A>G	ENSMUSP00000153910.1:p.Tyr129Cys	H-2-Kb	9	6	6	MAYDRCVAI	MAYDRYVAI	NetMHCpan	132.7	14.4	0.109	199	0.246	145.305	30.259	0.208	27.08	145.65	14.4	132.7	39.27443988	184.1238299	33.43874735	144.9606074	M6	0.528571429	0.528571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.248	199	0	0	NA	9qA2	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	18312832	18312832	A	T	ENSMUST00000001825.8	1	ENSMUSG00000001774	missense	T/S	303	Chordc1	ENSMUST00000001825.8:c.907A>T	ENSMUSP00000001825.7:p.Thr303Ser	H-2-Kb	9	10	2	ISMRKAEPM	ITMRKAEPM	NetMHC	163.53	340.06	2.079	186	0.199	267.893	457.254	1.707	340.06	163.53	323.5	182.4	641.3720055	383.8044448	574.4470454	353.3865369	M6	-1.128571429	-0.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.206	186	216	53	0.24537037	9qA2	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	19921049	19921049	T	C	ENSMUST00000057596.9	1	ENSMUSG00000051118	missense	V/A	280	Olfr77	ENSMUST00000057596.9:c.839T>C	ENSMUSP00000058810.7:p.Val280Ala	H-2-Kb	9	4	8	ITSIMYTAV	ITSIMYTVV	NetMHC	220.87	1139.98	5.161	149	0.161	327.422	640.54	1.956	1139.98	220.87	465.9	229	753.5464011	534.6997733	527.5334467	425.8434778	M6	1.371428571	1.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.169	149	0	0	NA	9qA3	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.906644664	sgMsh2	cell line
chr9	15999264	15999264	G	T	ENSMUST00000082170.5	5	ENSMUSG00000074505	missense	T/N	1814	Fat3	ENSMUST00000082170.5:c.5441C>A	ENSMUSP00000080808.5:p.Thr1814Asn	H-2-Kb	9	10	2	SNAKKFFTV	STAKKFFTV	NetMHCpan	202.5	308.7	1.524	169	0.249	290.184	427.855	1.474	340.35	252.19	308.7	202.5	515.3591605	328.178405	624.0939895	426.8251484	M6	0.442857143	0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.254	169	0	0	NA	9qA2	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	21036526	21036526	T	G	ENSMUST00000019616.5	1	ENSMUSG00000032174	missense	S/R	573	Icam5	ENSMUST00000019616.5:c.1719T>G	ENSMUSP00000019616.4:p.Ser573Arg	H-2-Kb	9	4	8	VTVEYGPRF	VTVEYGPSF	NetMHCpan	261	325.9	1.249	172	0.041	322.467	492.49	1.527	453.79	274.04	325.9	261	586.2866429	417.9362099	531.1901339	370.8941642	M6	-0.614285714	0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2	2	0.043	172	4	0	0	9qA3	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.230684737	sgMsh2	cell line
chr8	111504457	111504457	A	G	ENSMUST00000034437.7	1	ENSMUSG00000031959	missense	Y/H	40	Wdr59	ENSMUST00000034437.7:c.118T>C	ENSMUSP00000034437.7:p.Tyr40His	H-2-Kb	9	4	8	LSGRRFLHI	LSGRRFLYI	SMMPMBEC	269.308	294.612	1.094	192	0.151	326.091	405.846	1.245	419.85	276.25	493.2	412.7	391.8411118	375.9326101	294.6117067	269.3084622	M6	-0.214285714	0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.147	192	27	1	0.037037037	8qE1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.788619915	sgMsh2	cell line
chr8	105178615	105178615	A	T	ENSMUST00000052209.8	1	ENSMUSG00000031885	missense	N/I	63	Cbfb	ENSMUST00000052209.8:c.188A>T	ENSMUSP00000059382.2:p.Asn63Ile	H-2-Kb	9	3	9	IAFVATGTI	IAFVATGTN	NetMHCpan	147.4	7924.2	53.76	157	0.045	476.809	5159.061	10.82	13674.64	401.4	7924.2	147.4	2393.922023	552.2172896	1762.990613	624.0939895	M6	1.642857143	2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.042	157	179	7	0.039106145	8qD3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.225319976	sgMsh2	cell line
chr8	111504457	111504457	A	G	ENSMUST00000034437.7	1	ENSMUSG00000031959	missense	Y/H	40	Wdr59	ENSMUST00000034437.7:c.118T>C	ENSMUSP00000034437.7:p.Tyr40His	H-2-Kb	9	7	5	RRFLHIVNL	RRFLYIVNL	NetMHCpan	322.2	193.1	0.599	192	0.151	490.433	359.657	0.733	288.54	439.8	193.1	322.2	440.6664633	549.6800816	430.7745129	541.0656958	M6	1.771428571	1.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.147	192	27	1	0.037037037	8qE1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.788619915	sgMsh2	cell line
chr9	71725437	71725437	T	C	ENSMUST00000072899.8	5	ENSMUSG00000032232	missense	K/E	211	Cgnl1	ENSMUST00000072899.8:c.631A>G	ENSMUSP00000072672.2:p.Lys211Glu	H-2-Db	9	9	3	LAETNMTAI	LAKTNMTAI	NetMHC	56.8	39.51	0.696	174	0.086	78.127	105.768	1.354	39.51	56.8	373.7	298.9	117.657604	85.03936332	93.87933401	71.21475754	M6	-0.028571429	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.087	174	161	5	0.031055901	9qD	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.466734235	sgMsh2	cell line
chr9	40978194	40978194	A	G	ENSMUST00000180384.2	1	ENSMUSG00000032021	missense	L/P	295	Crtam	ENSMUST00000180384.2:c.884T>C	ENSMUSP00000137837.1:p.Leu295Pro	H-2-Db	9	4	8	SGILLLTPV	SGILLLTLV	NetMHC	128.59	1036.29	8.059	136	0.228	206.747	925.094	4.475	1036.29	128.59	1887.2	193.9	707.3266152	219.5937625	813.8980351	245.2279683	M6	2.542857143	2.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.238	136	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	38877830	38877830	T	C	ENSMUST00000078289.2	NA	ENSMUSG00000064333	missense	I/T	218	Olfr926	ENSMUST00000078289.2:c.653T>C	ENSMUSP00000077405.2:p.Ile218Thr	H-2-Db	9	8	4	YAFTLTSIL	YAFILTSIL	NetMHC	302.44	508.52	1.681	396	0.22	427.2	529.423	1.239	508.52	302.44	347.5	317.9	550.3259602	541.5268566	555.3541224	536.5003381	M6	1.814285714	1.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.219	396	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	39873961	39873961	TA	T	ENSMUST00000215303.2	2	ENSMUSG00000094449	FS	K/X	229	Olfr972	ENSMUST00000215303.2:c.687del	ENSMUSP00000150389.1:p.Lys229AsnfsTer57	H-2-Db	9	5	7	ASILQINPL	ASILQIKST	NetMHCpan	210.7	26622.6	126.353	349	0.209	343.127	27752.058	80.88	38748.74	660.68	26622.6	210.7	28881.51695	411.7370988	16276.83646	274.5174778	M6	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;Vardict	3	0.214	349	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	39719434	39719434	T	C	ENSMUST00000215164.2	5	ENSMUSG00000095839	missense	I/T	69	Olfr965	ENSMUST00000215164.2:c.206T>C	ENSMUSP00000150401.1:p.Ile69Thr	H-2-Kb	8	6	6	SSLSFTDL	SSLSFIDL	NetMHC	7.06	8.67	1.228	299	0.244	21.504	26.028	1.21	8.67	7.06	22.9	16.6	29.15680954	26.40827294	32.48927349	28.29697428	M6	0.657142857	0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.237	299	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	38877830	38877830	T	C	ENSMUST00000078289.2	NA	ENSMUSG00000064333	missense	I/T	218	Olfr926	ENSMUST00000078289.2:c.653T>C	ENSMUSP00000077405.2:p.Ile218Thr	H-2-Kb	8	6	6	ISYAFTLT	ISYAFILT	NetMHC	8.32	17.61	2.117	396	0.22	18.314	25.95	1.417	17.61	8.32	25	13.2	36.20261985	32.78989304	26.89923939	23.42825811	M6	0.7	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.219	396	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	21343176	21343176	T	C	ENSMUST00000034697.7	1	ENSMUSG00000057193	missense	V/A	251	Slc44a2	ENSMUST00000034697.7:c.752T>C	ENSMUSP00000034697.7:p.Val251Ala	H-2-Kb	8	5	7	LSLLFIAL	LSLLFIVL	NetMHC	10.35	60.08	5.805	198	0.045	16.454	49.66	3.018	60.08	10.35	81.3	24	39.24099402	16.66249377	36.53759857	16.24575876	M6	2.814285714	2.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.046	198	55	2	0.036363636	9qA3	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.246779021	sgMsh2	cell line
chr9	44810718	44810718	A	G	ENSMUST00000002095.10	5	ENSMUSG00000002028	missense	F/L	3774	Kmt2a	ENSMUST00000002095.10:c.11320T>C	ENSMUSP00000002095.3:p.Phe3774Leu	H-2-Kb	8	4	8	SAFDMFNL	SAFDMFNF	NetMHCpan	12.6	87.3	6.929	138	0.072	27.661	422.512	15.275	275.2	18.7	87.3	12.6	595.3056439	36.62182643	569.823033	45.36699358	M6	0.871428571	0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.08	138	29	2	0.068965517	9qA5.2	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.429180906	sgMsh2	cell line
chr9	39470406	39470406	A	G	ENSMUST00000220176.1	5	ENSMUSG00000063176	missense	F/L	107	Olfr955	ENSMUST00000220176.1:c.319T>C	ENSMUSP00000151246.1:p.Phe107Leu	H-2-Kb	8	4	8	QFYFFCTL	QFYFFCTF	SMM	16.701	271.481	16.255	372	0.054	33.212	325.341	9.796	283.62	43.53	387.2	37.2	271.4813499	16.70090478	367.0624846	29.22402293	M6	1.814285714	1.814285714	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;MuSe;Vardict	3	0.051	372	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.273602828	sgMsh2	cell line
chr9	39873961	39873961	TA	T	ENSMUST00000215303.2	2	ENSMUSG00000094449	FS	K/X	229	Olfr972	ENSMUST00000215303.2:c.687del	ENSMUSP00000150389.1:p.Lys229AsnfsTer57	H-2-Kb	8	23	0	AAHTYQLL	NA	NetMHC	46.15	NA	NA	349	0.209	132.589	NA	NA	NA	46.15	NA	67.6	NA	197.5786438	NA	202.6469166	M6	0.1	0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.214	349	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	57612601	57612601	G	A	ENSMUST00000093832.10	1	ENSMUSG00000056271	missense	T/I	251	Lman1l	ENSMUST00000093832.10:c.752C>T	ENSMUSP00000091352.4:p.Thr251Ile	H-2-Kb	8	7	5	LSFLIFSL	LSFLTFSL	NetMHCpan	36.2	25.9	0.715	115	0.122	64.782	51.031	0.788	19.37	47.2	25.9	36.2	100.8648855	123.5207728	76.16229111	82.36448742	M6	2.3	2.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.121	115	0	0	NA	9qB	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.64913612	sgMsh2	cell line
chr9	38539211	38539211	GT	G	ENSMUST00000215122.1	5	ENSMUSG00000060114	FS	C/X	105	Olfr910	ENSMUST00000215122.1:c.321del	ENSMUSP00000149263.1:p.Phe107LeufsTer9	H-2-Kb	8	6	8	QLYFFCFL	QLYFFCFF	SMM	34.494	560.712	16.255	462	0.026	54.717	600.357	10.972	1082.4	86.51	599.9	61.6	560.7121928	34.49371732	600.8139392	47.83436356	M6	2.457142857	2.457142857	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.028	462	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.150213317	sgMsh2	cell line
chr9	45183178	45183178	C	A	ENSMUST00000034599.14	1	ENSMUSG00000032091	missense	S/I	145	Tmprss4	ENSMUST00000034599.14:c.434G>T	ENSMUSP00000034599.8:p.Ser145Ile	H-2-Kb	8	11	1	IQPAFRAV	SQPAFRAV	NetMHC	87.31	206.86	2.369	101	0.297	159.809	320.511	2.006	206.86	87.31	724.3	373.3	261.0597994	138.5925865	379.9618556	181.0256018	M6	0.142857143	0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.3	101	0	0	NA	9qA5.2	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	38877830	38877830	T	C	ENSMUST00000078289.2	NA	ENSMUSG00000064333	missense	I/T	218	Olfr926	ENSMUST00000078289.2:c.653T>C	ENSMUSP00000077405.2:p.Ile218Thr	H-2-Kb	8	4	8	VIISYAFT	VIISYAFI	SMMPMBEC	73.07	22.322	0.305	396	0.22	96.651	20.161	0.209	9	92.9	18	419.9	22.89496585	100.4014535	22.32235446	73.07015019	M6	1.542857143	2.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.219	396	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	39470583	39470583	A	C	ENSMUST00000220176.1	5	ENSMUSG00000063176	missense	L/V	48	Olfr955	ENSMUST00000220176.1:c.142T>G	ENSMUSP00000151246.1:p.Leu48Val	H-2-Kb	8	11	1	VILISSQL	LILISSQL	NetMHC	98.86	821.42	8.309	261	0.261	136.134	722.391	5.306	821.42	98.86	855.9	166.2	619.070344	122.3883275	623.3615346	149.8787285	M6	1.642857143	1.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.26	261	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	31426949	31426949	T	C	ENSMUST00000048050.8	1	ENSMUSG00000041737	missense	T/A	245	Tmem45b	ENSMUST00000048050.8:c.733A>G	ENSMUSP00000042313.7:p.Thr245Ala	H-2-Kb	8	6	6	VYCFLARV	VYCFLTRV	NetMHCpan	104	145.5	1.399	120	0.275	344.012	994.74	2.892	319.39	115.57	145.5	104	1789.534189	626.2388407	1670.090478	572.4532166	M6	1.328571429	1.328571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.292	120	0	0	NA	9qA4	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	35214258	35214258	A	G	ENSMUST00000034541.11	1	ENSMUSG00000032042	missense	M/V	373	Srpr	ENSMUST00000034541.11:c.1117A>G	ENSMUSP00000034541.5:p.Met373Val	H-2-Kb	8	10	2	VVGTFSTV	VMGTFSTV	NetMHC	153.46	124.82	0.813	184	0.25	185.776	206.103	1.109	124.82	153.46	176.3	179.8	255.1173529	220.6683258	235.9065504	191.7520431	M6	1.228571429	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.256	184	175	25	0.142857143	9qA4	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	39795557	39795557	CT	C	ENSMUST00000213266.1	2	ENSMUSG00000094254	FS	F/X	61	Olfr969	ENSMUST00000213266.1:c.186del	ENSMUSP00000149551.1:p.Leu63SerfsTer21	H-2-Kb	8	8	6	PMYFFSAV	PMYFFLSS	NetMHCpan	120.6	2859.6	23.711	296	0.264	174.056	2636.808	15.149	7386.46	170.39	2859.6	120.6	1468.047136	177.7215122	2414.015198	232.6697911	M6	1.628571429	1.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.26	296	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	39873961	39873961	TA	T	ENSMUST00000215303.2	2	ENSMUSG00000094449	FS	K/X	229	Olfr972	ENSMUST00000215303.2:c.687del	ENSMUSP00000150389.1:p.Lys229AsnfsTer57	H-2-Kb	8	6	6	SILQINPL	SILQIKST	NetMHC	181.44	24299.42	133.925	349	0.209	244.103	20486.719	83.927	24299.42	181.44	17328.4	232.5	23645.03711	259.2626764	13144.37679	255.7054591	M6	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;Vardict	3	0.214	349	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	39258136	39258136	A	C	ENSMUST00000076903.2	NA	ENSMUSG00000063380	missense	C/G	182	Olfr945	ENSMUST00000076903.2:c.544T>G	ENSMUSP00000076169.2:p.Cys182Gly	H-2-Kb	8	6	6	INHYFGDI	INHYFCDI	NetMHCpan	102	90.9	0.891	229	0.541	276.289	313.213	1.134	217.41	182.12	90.9	102	466.380088	456.8146256	409.0157201	370.458872	M6	-0.657142857	-0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.536	229	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr9	38848204	38848204	C	T	ENSMUST00000217350.1	5	ENSMUSG00000062103	missense	A/V	30	Olfr924	ENSMUST00000217350.1:c.89C>T	ENSMUSP00000149849.1:p.Ala30Val	H-2-Kb	8	11	1	VIYVITVV	AIYVITVV	NetMHC	202.6	1252.59	6.183	233	0.039	217.935	913.276	4.191	1252.59	202.6	849.9	203.2	976.6523514	259.2626764	797.5170931	232.6697911	M6	2.8	2.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.045	233	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.24141426	sgMsh2	cell line
chr9	39018999	39018999	G	T	ENSMUST00000214410.1	5	ENSMUSG00000058820	missense	L/I	181	Olfr146	ENSMUST00000214410.1:c.541C>A	ENSMUSP00000149294.1:p.Leu181Ile	H-2-Kb	8	4	8	INHYFCDI	INHYFCDL	NetMHCpan	90.9	29.4	0.323	263	0.046	313.213	50.321	0.161	26.98	217.41	29.4	90.9	71.90183929	466.380088	71.24263926	409.0157201	M6	-0.242857143	-0.242857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.053	263	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.28433235	sgMsh2	cell line
chr9	22339087	22339087	A	G	ENSMUST00000040912.8	1	ENSMUSG00000036777	missense	V/A	959	Anln	ENSMUST00000040912.8:c.2876T>C	ENSMUSP00000045873.7:p.Val959Ala	H-2-Kb	8	10	2	KAPFLSPL	KVPFLSPL	NetMHCpan	85.8	89.6	1.044	52	0.173	354.145	402.61	1.137	322.45	233.24	89.6	85.8	482.7696948	475.0507412	537.9476318	581.7548331	M6	1.171428571	1.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.208	52	49	11	0.224489796	9qA3	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	38728677	38728677	T	C	ENSMUST00000001544.11	1	ENSMUSG00000023186	missense	V/A	407	Vwa5a	ENSMUST00000001544.11:c.1220T>C	ENSMUSP00000001544.5:p.Val407Ala	H-2-Kb	8	6	6	SVIREAKL	SVIREVKL	SMMPMBEC	243.075	701.035	2.884	191	0.272	376.099	942.164	2.505	1317.77	366.95	770.7	434	1113.627636	385.2476516	701.0354824	243.0748352	M6	0.342857143	0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.294	191	82	25	0.304878049	9qA5.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	64212673	64212673	C	A	ENSMUST00000005066.8	1	ENSMUSG00000004936	missense	V/L	117	Map2k1	ENSMUST00000005066.8:c.349G>T	ENSMUSP00000005066.8:p.Val117Leu	H-2-Kb	8	5	7	IIRELQLL	IIRELQVL	SMM	330.933	442.323	1.337	76	0.211	423.71	939.42	2.217	1585.88	379.92	1226.1	467.5	442.3234863	330.9329418	652.7396586	480.5515695	M6	0.628571429	0.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.224	76	161	27	0.167701863	9qC	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	39873961	39873961	TA	T	ENSMUST00000215303.2	2	ENSMUSG00000094449	FS	K/X	229	Olfr972	ENSMUST00000215303.2:c.687del	ENSMUSP00000150389.1:p.Lys229AsnfsTer57	H-2-Kb	8	55	0	CPLYFIPL	NA	SMM	129.939	NA	NA	349	0.209	300.671	NA	NA	NA	688.28	NA	422.8	NA	129.9391436	NA	178.5418375	M6	1.485714286	1.485714286	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.214	349	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	44810718	44810718	A	G	ENSMUST00000002095.10	5	ENSMUSG00000002028	missense	F/L	3774	Kmt2a	ENSMUST00000002095.10:c.11320T>C	ENSMUSP00000002095.3:p.Phe3774Leu	H-2-Kb	8	5	7	AFDMFNLL	AFDMFNFL	SMMPMBEC	436.255	304.607	0.698	138	0.072	475.688	456.604	0.96	1299.15	783.28	608.6	502.9	297.6733808	448.476819	304.6070846	436.2545806	M6	1.157142857	1.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.08	138	29	2	0.068965517	9qA5.2	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.429180906	sgMsh2	cell line
chr9	31327436	31327436	T	C	ENSMUST00000074510.3	5	ENSMUSG00000042496	missense	I/T	159	Prdm10	ENSMUST00000074510.3:c.476T>C	ENSMUSP00000074104.3:p.Ile159Thr	H-2-Kb	8	8	4	VLYTDRFL	VLYIDRFL	SMMPMBEC	165.097	182.701	1.107	87	0.287	351.288	303.271	0.863	810.78	784.8	421.3	528.5	185.2422298	174.0764414	182.7006111	165.0973111	M6	0.057142857	0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.292	87	8	4	0.5	9qA4	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	59868201	59868201	A	G	ENSMUST00000136740.7	5	ENSMUSG00000039585	missense	R/G	1032	Myo9a	ENSMUST00000136740.7:c.3094A>G	ENSMUSP00000122852.1:p.Arg1032Gly	H-2-Kb	8	6	6	LQRWFGVL	LQRWFRVL	SMM	342.563	319.698	0.933	208	0.24	377.767	367.717	0.973	710.56	858.71	375.9	396	319.6980594	342.5626424	359.5340277	359.5340277	M6	0.214285714	0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.234	208	34	7	0.205882353	9qB	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	56885911	56885911	A	C	ENSMUST00000035661.6	1	ENSMUSG00000032911	missense	N/T	310	Cspg4	ENSMUST00000035661.6:c.929A>C	ENSMUSP00000038909.5:p.Asn310Thr	H-2-Kb	8	8	4	RTFTRGVL	RTFNRGVL	NetMHCpan	331.6	397.1	1.198	100	0.06	404.565	464.908	1.149	1203.57	1063.51	397.1	331.6	476.1458462	428.2920371	453.6699358	380.8377582	M6	0.642857143	0.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.062	100	2	0	0	9qB	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.332615202	sgMsh2	cell line
chr9	21343176	21343176	T	C	ENSMUST00000034697.7	1	ENSMUSG00000057193	missense	V/A	251	Slc44a2	ENSMUST00000034697.7:c.752T>C	ENSMUSP00000034697.7:p.Val251Ala	H-2-Kb	9	5	7	LSLLFIALL	LSLLFIVLL	NetMHC	12.96	84.48	6.519	198	0.045	59.694	117.692	1.972	84.48	12.96	351.8	39.2	115.6405104	80.18811416	119.7429629	88.35883884	M6	3.471428571	3.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.046	198	55	2	0.036363636	9qA3	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.246779021	sgMsh2	cell line
chr9	31426949	31426949	T	C	ENSMUST00000048050.8	1	ENSMUSG00000041737	missense	T/A	245	Tmem45b	ENSMUST00000048050.8:c.733A>G	ENSMUSP00000042313.7:p.Thr245Ala	H-2-Kb	9	5	7	LVYCFLARV	LVYCFLTRV	NetMHC	14.04	29.65	2.112	120	0.275	37.647	48.836	1.297	29.65	14.04	37.4	30.2	60.27122243	45.09309038	66.41252616	48.78092149	M6	1.328571429	2.514285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.292	120	0	0	NA	9qA4	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	44810718	44810718	A	G	ENSMUST00000002095.10	5	ENSMUSG00000002028	missense	F/L	3774	Kmt2a	ENSMUST00000002095.10:c.11320T>C	ENSMUSP00000002095.3:p.Phe3774Leu	H-2-Kb	9	4	8	SAFDMFNLL	SAFDMFNFL	NetMHCpan	13.1	14.6	1.115	138	0.072	20.978	33.061	1.576	15.76	14.47	14.6	13.1	50.36281538	27.4859024	65.80365246	39.55942769	M6	1.157142857	1.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.08	138	29	2	0.068965517	9qA5.2	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.429180906	sgMsh2	cell line
chr9	39470406	39470406	A	G	ENSMUST00000220176.1	5	ENSMUSG00000063176	missense	F/L	107	Olfr955	ENSMUST00000220176.1:c.319T>C	ENSMUSP00000151246.1:p.Phe107Leu	H-2-Kb	9	3	9	AQFYFFCTL	AQFYFFCTF	NetMHCpan	9.5	51.1	5.379	372	0.054	39.402	100.23	2.544	96.68	17.27	51.1	9.5	103.7791239	61.53327071	129.1962773	74.68785726	M6	1.814285714	1.814285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;MuSe;Vardict	3	0.051	372	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.273602828	sgMsh2	cell line
chr9	39511354	39511354	C	T	ENSMUST00000216177.1	3	ENSMUSG00000095322	missense	R/H	122	Olfr957	ENSMUST00000216177.1:c.365G>A	ENSMUSP00000149559.1:p.Arg122His	H-2-Kb	9	7	5	MAYDHYVAI	MAYDRYVAI	NetMHCpan	10.8	14.4	1.333	170	0.029	29.47	30.259	1.027	27.08	22.19	14.4	10.8	39.27443988	40.65462879	33.43874735	36.74937861	M6	0.171428571	0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.031	170	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.166307601	sgMsh2	cell line
chr9	39238389	39238389	A	C	ENSMUST00000073248.1	NA	ENSMUSG00000096109	missense	F/V	15	Olfr1537	ENSMUST00000073248.1:c.43T>G	ENSMUSP00000072979.1:p.Phe15Val	H-2-Kb	9	8	4	VTEVFLAGL	VTEFFLAGL	NetMHC	23.57	45.53	1.932	187	0.032	115.598	107.847	0.933	45.53	23.57	84.7	83.2	159.261206	151.7434661	130.9935766	147.9960077	M6	1.785714286	1.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.04	187	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.214590453	sgMsh2	cell line
chr9	39078200	39078200	A	G	ENSMUST00000056499.3	NA	ENSMUSG00000048501	missense	F/L	182	Olfr938	ENSMUST00000056499.3:c.544T>C	ENSMUSP00000055053.2:p.Phe182Leu	H-2-Kb	9	3	9	INHYFCDLL	INHYFCDLF	NetMHC	40.99	129.13	3.15	189	0.048	94.887	238.502	2.514	129.13	40.99	365.4	57	223.9288243	132.7730709	253.0754397	146.3019114	M6	0.7	0.7	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.053	189	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.28433235	sgMsh2	cell line
chr9	38539211	38539211	GT	G	ENSMUST00000215122.1	5	ENSMUSG00000060114	FS	C/X	105	Olfr910	ENSMUST00000215122.1:c.321del	ENSMUSP00000149263.1:p.Phe107LeufsTer9	H-2-Kb	9	5	9	TQLYFFCFL	TQLYFFCFF	NetMHCpan	42.2	412.6	9.777	462	0.026	119.532	347.361	2.906	332.27	47.59	412.6	42.2	322.9311952	191.4740838	362.4515823	209.5318271	M6	2.457142857	2.457142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.028	462	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.150213317	sgMsh2	cell line
chr9	38877830	38877830	T	C	ENSMUST00000078289.2	NA	ENSMUSG00000064333	missense	I/T	218	Olfr926	ENSMUST00000078289.2:c.653T>C	ENSMUSP00000077405.2:p.Ile218Thr	H-2-Kb	9	4	8	VIISYAFTL	VIISYAFIL	NetMHCpan	24.7	68.8	2.785	396	0.22	81.467	135.846	1.668	144.31	48.88	68.8	24.7	127.382568	114.0538632	210.9842323	178.7516256	M6	1.442857143	2.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.219	396	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	37381811	37381811	A	G	ENSMUST00000051839.8	1	ENSMUSG00000046240	missense	I/V	233	Hepacam	ENSMUST00000051839.8:c.697A>G	ENSMUSP00000054105.7:p.Ile233Val	H-2-Kb	9	11	1	VTVYRRSSL	ITVYRRSSL	NetMHC	110.69	128.71	1.163	94	0.223	149.029	208.618	1.4	128.71	110.69	305.3	322.1	223.9288243	152.0932709	193.3080768	145.9654263	M6	-0.557142857	-0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.221	94	0	0	NA	9qA4	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	39470406	39470406	A	G	ENSMUST00000220176.1	5	ENSMUSG00000063176	missense	F/L	107	Olfr955	ENSMUST00000220176.1:c.319T>C	ENSMUSP00000151246.1:p.Phe107Leu	H-2-Kb	9	4	8	QFYFFCTLV	QFYFFCTFV	SMM	98.2	179.933	1.832	372	0.054	131.98	226.449	1.716	202.72	113.56	870.8	481	179.9326599	98.19966359	250.1785091	150.4007493	M6	2.014285714	2.014285714	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;MuSe;Vardict	3	0.051	372	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.273602828	sgMsh2	cell line
chr9	39795557	39795557	CT	C	ENSMUST00000213266.1	2	ENSMUSG00000094254	FS	F/X	61	Olfr969	ENSMUST00000213266.1:c.186del	ENSMUSP00000149551.1:p.Leu63SerfsTer21	H-2-Kb	9	7	7	TPMYFFSAV	TPMYFFLSS	NetMHC	139.15	5874.91	42.22	296	0.264	398.204	2540.476	6.38	5874.91	139.15	2912	226.1	1349.304597	570.3087043	2168.952295	671.8154697	M6	1.628571429	1.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.26	296	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	38539211	38539211	GT	G	ENSMUST00000215122.1	5	ENSMUSG00000060114	FS	C/X	105	Olfr910	ENSMUST00000215122.1:c.321del	ENSMUSP00000149263.1:p.Phe107LeufsTer9	H-2-Kb	9	6	8	QLYFFCFLL	QLYFFCFFV	SMM	111.201	458.258	4.121	462	0.026	155.068	657.156	4.238	725.13	151.92	2713.3	336.2	458.2579416	111.2013347	589.1827186	158.2158541	M6	2.457142857	2.457142857	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.028	462	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.150213317	sgMsh2	cell line
chr9	58908457	58908457	T	C	ENSMUST00000068664.6	1	ENSMUSG00000032340	missense	N/S	845	Neo1	ENSMUST00000068664.6:c.2534A>G	ENSMUSP00000063656.5:p.Asn845Ser	H-2-Kb	9	4	8	ITLKAFNSV	ITLKAFNNV	NetMHCpan	158.6	92	0.58	83	0.072	352.943	280.466	0.795	48.67	159.99	92	158.6	468.9321403	545.8961105	537.3410257	604.2963902	M6	0.628571429	0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.076	83	157	11	0.070063694	9qB	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.407721861	sgMsh2	cell line
chr9	44106252	44106252	A	G	ENSMUST00000034654.8	1	ENSMUSG00000034739	missense	S/G	514	Mfrp	ENSMUST00000034654.8:c.1540A>G	ENSMUSP00000034654.7:p.Ser514Gly	H-2-Kb	9	4	8	RGYKSLTGL	RGYKSLTSL	NetMHC	175.39	239.04	1.363	88	0.182	399.879	468.725	1.172	239.04	175.39	160.8	177.3	698.4092778	622.4579241	703.4771574	692.2293355	M6	0.071428571	0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.193	88	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	39470583	39470583	A	C	ENSMUST00000220176.1	5	ENSMUSG00000063176	missense	L/V	48	Olfr955	ENSMUST00000220176.1:c.142T>G	ENSMUSP00000151246.1:p.Leu48Val	H-2-Kb	9	10	2	VVILISSQL	VLILISSQL	NetMHC	181.26	873.32	4.818	261	0.261	223.649	857.6	3.835	873.32	181.26	544.2	189.6	908.050496	257.6973782	841.8796271	285.9235978	M6	1.642857143	2.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.26	261	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	39873961	39873961	TA	T	ENSMUST00000215303.2	2	ENSMUSG00000094449	FS	K/X	229	Olfr972	ENSMUST00000215303.2:c.687del	ENSMUSP00000150389.1:p.Lys229AsnfsTer57	H-2-Kb	9	54	0	KCPLYFIPL	NA	NetMHCpan	54.1	NA	NA	349	0.209	209.432	NA	NA	NA	181.59	NA	54.1	NA	297.2418804	NA	237.2739171	M6	1.485714286	1.485714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.214	349	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	39873961	39873961	TA	T	ENSMUST00000215303.2	2	ENSMUSG00000094449	FS	K/X	229	Olfr972	ENSMUST00000215303.2:c.687del	ENSMUSP00000150389.1:p.Lys229AsnfsTer57	H-2-Kb	9	23	0	AAHTYQLLL	NA	NetMHCpan	152.4	NA	NA	349	0.209	271.062	NA	NA	NA	184.76	NA	152.4	NA	357.3633412	NA	360.7862685	M6	0.385714286	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.214	349	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	38539211	38539211	GT	G	ENSMUST00000215122.1	5	ENSMUSG00000060114	FS	C/X	105	Olfr910	ENSMUST00000215122.1:c.321del	ENSMUSP00000149263.1:p.Phe107LeufsTer9	H-2-Kb	9	8	6	YFFCFLLSL	YFFCFFVIS	SMM	105.223	201.423	1.914	462	0.026	162.986	1508.892	9.258	2677.18	195.88	7780.1	333.6	201.4234359	105.2228353	340.6042008	130.0918231	M6	2.671428571	2.671428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.028	462	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.150213317	sgMsh2	cell line
chr9	39258136	39258136	A	C	ENSMUST00000076903.2	NA	ENSMUSG00000063380	missense	C/G	182	Olfr945	ENSMUST00000076903.2:c.544T>G	ENSMUSP00000076169.2:p.Cys182Gly	H-2-Kb	9	5	7	VINHYFGDI	VINHYFCDI	NetMHC	248.12	402.57	1.622	229	0.541	313.678	336.411	1.072	402.57	248.12	262.7	378.9	382.9217191	379.4110717	289.9011913	248.4562923	M6	-0.657142857	0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.536	229	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr9	73012712	73012712	A	C	ENSMUST00000085350.10	1	ENSMUSG00000034563	missense	K/N	536	Ccpg1	ENSMUST00000085350.10:c.1608A>C	ENSMUSP00000082458.4:p.Lys536Asn	H-2-Kb	9	5	7	STFRHFNDT	STFRHFKDT	NetMHC	253.98	561.83	2.212	57	0.158	303.15	536.715	1.77	561.83	253.98	511.6	324.3	642.8505207	354.0870144	460.5215948	282.000579	M6	-1.4	-1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.164	57	141	44	0.312056738	9qD	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.879820857	sgMsh2	cell line
chr9	39258136	39258136	A	C	ENSMUST00000076903.2	NA	ENSMUSG00000063380	missense	C/G	182	Olfr945	ENSMUST00000076903.2:c.544T>G	ENSMUSP00000076169.2:p.Cys182Gly	H-2-Kb	9	6	6	INHYFGDIL	INHYFCDIL	NetMHCpan	249.4	114.5	0.459	229	0.541	350.747	161.261	0.46	107.57	280.66	114.5	249.4	208.0223508	420.8332054	225.553723	456.2995075	M6	0.385714286	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.536	229	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	2	1	sgMsh2	cell line
chr9	39873961	39873961	TA	T	ENSMUST00000215303.2	2	ENSMUSG00000094449	FS	K/X	229	Olfr972	ENSMUST00000215303.2:c.687del	ENSMUSP00000150389.1:p.Lys229AsnfsTer57	H-2-Kb	9	5	7	ASILQINPL	ASILQIKST	NetMHCpan	248.1	11342.7	45.718	349	0.209	319.911	8922.822	27.892	15545.63	284.1	11342.7	248.1	6502.943789	355.7214058	5770.985724	411.386466	M6	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;Vardict	3	0.214	349	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	38728677	38728677	T	C	ENSMUST00000001544.11	1	ENSMUSG00000023186	missense	V/A	407	Vwa5a	ENSMUST00000001544.11:c.1220T>C	ENSMUSP00000001544.5:p.Val407Ala	H-2-Kb	9	5	7	FSVIREAKL	FSVIREVKL	SMMPMBEC	225.035	304.965	1.355	191	0.272	311.161	550.888	1.77	617.48	286.5	1285.3	628	484.2950164	335.8226621	304.9650004	225.0349638	M6	0.342857143	0.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.294	191	82	25	0.304878049	9qA5.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	38877830	38877830	T	C	ENSMUST00000078289.2	NA	ENSMUSG00000064333	missense	I/T	218	Olfr926	ENSMUST00000078289.2:c.653T>C	ENSMUSP00000077405.2:p.Ile218Thr	H-2-Kb	9	6	6	ISYAFTLTS	ISYAFILTS	SMM	114.844	113.792	0.991	396	0.22	154.609	145.943	0.944	348.34	311.88	116.8	119	113.7915466	114.8444468	175.0854271	190.2172944	M6	0.7	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.219	396	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	39018999	39018999	G	T	ENSMUST00000214410.1	5	ENSMUSG00000058820	missense	L/I	181	Olfr146	ENSMUST00000214410.1:c.541C>A	ENSMUSP00000149294.1:p.Leu181Ile	H-2-Kb	9	4	8	INHYFCDII	INHYFCDLI	NetMHC	329.69	127.26	0.386	263	0.046	436.374	256.697	0.588	127.26	329.69	183.7	356.2	329.6932077	516.547186	338.259498	521.4948213	M6	0.9	0.9	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.053	263	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.28433235	sgMsh2	cell line
chr9	38877830	38877830	T	C	ENSMUST00000078289.2	NA	ENSMUSG00000064333	missense	I/T	218	Olfr926	ENSMUST00000078289.2:c.653T>C	ENSMUSP00000077405.2:p.Ile218Thr	H-2-Kb	9	8	4	YAFTLTSIL	YAFILTSIL	NetMHCpan	225.9	241.6	1.069	396	0.22	371.69	335.393	0.902	407.04	376.85	241.6	225.9	314.1304236	366.5303993	356.6563823	417.1094219	M6	1.814285714	1.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.219	396	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	56886067	56886067	A	T	ENSMUST00000035661.6	1	ENSMUSG00000032911	missense	N/I	362	Cspg4	ENSMUST00000035661.6:c.1085A>T	ENSMUSP00000038909.5:p.Asn362Ile	H-2-Kb	9	9	3	SVIGRRQGL	SVNGRRQGL	SMM	279.969	612.506	2.188	63	0.206	415.245	1673.187	4.029	2647.74	512.62	4801.6	977.9	612.5055101	279.9690348	698.6344547	317.8703353	M6	-0.714285714	-0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	63	0	0	NA	9qB	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	27319526	27319526	A	G	ENSMUST00000133213.2	5	ENSMUSG00000034275	missense	D/G	275	Igsf9b	ENSMUST00000133213.2:c.824A>G	ENSMUSP00000117017.1:p.Asp275Gly	H-2-Kb	9	6	6	VYFQNGLKL	VYFQNDLKL	NetMHCpan	424.6	721.3	1.699	128	0.172	494.857	455.569	0.921	479.51	521.71	721.3	424.6	431.6283877	635.4918716	329.7995054	468.0044688	M6	-0.128571429	0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.186	128	0	0	NA	9qA4	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.997845606	sgMsh2	cell line
chr9	38877830	38877830	T	C	ENSMUST00000078289.2	NA	ENSMUSG00000064333	missense	I/T	218	Olfr926	ENSMUST00000078289.2:c.653T>C	ENSMUSP00000077405.2:p.Ile218Thr	H-2-Kb	10	6	6	ISYAFTLTSI	ISYAFILTSI	NetMHCpan	22.8	25.1	1.101	396	0.22	444.623	466.58	1.049	45.33	40.34	25.1	22.8	887.8303764	883.7511664	893.0175625	848.9067757	M6	1.528571429	1.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.219	396	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chrX	89754344	89754344	C	T	ENSMUST00000113958.1	1	ENSMUSG00000079513	missense	A/V	594	4932429P05Rik	ENSMUST00000113958.1:c.1781C>T	ENSMUSP00000109591.1:p.Ala594Val	H-2-Db	9	5	7	YNMLNSVII	YNMLNSAII	NetMHCpan	19.4	16.2	0.835	60	0.467	119.584	101.86	0.852	35.62	38.92	16.2	19.4	181.3927813	231.0042659	168.100885	200.2488359	M6	2.085714286	2.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.471	60	0	0	NA	XqC1	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr9	91364112	91364112	GA	G	ENSMUST00000034927.12	1	ENSMUSG00000032368	FS	F/X	302	Zic1	ENSMUST00000034927.12:c.906del	ENSMUSP00000034927.6:p.Cys304AlafsTer78	H-2-Kb	8	17	0	AAARFSRV	NA	NetMHC	63.39	NA	NA	152	0.237	159.488	NA	NA	NA	63.39	NA	145.3	NA	173.6760767	NA	202.6469166	M6	0.114285714	0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.238	152	0	0	NA	9qE3.2	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	91364112	91364112	GA	G	ENSMUST00000034927.12	1	ENSMUSG00000032368	FS	F/X	302	Zic1	ENSMUST00000034927.12:c.906del	ENSMUSP00000034927.6:p.Cys304AlafsTer78	H-2-Kb	8	68	0	TSPTFARC	NA	NetMHC	99.41	NA	NA	152	0.237	112.143	NA	NA	NA	99.41	NA	411.3	NA	106.5957771	NA	117.6901185	M6	-0.071428571	-0.071428571	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.238	152	0	0	NA	9qE3.2	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chrX	13665387	13665387	T	C	ENSMUST00000053659.1	1	ENSMUSG00000047678	missense	V/A	58	Gpr82	ENSMUST00000053659.1:c.173T>C	ENSMUSP00000062535.1:p.Val58Ala	H-2-Kb	8	8	4	ANLATANL	ANLVTANL	NetMHC	110.98	65.42	0.589	146	0.062	127.103	105.176	0.827	65.42	110.98	97.7	151.4	116.611129	121.5458122	112.6522836	132.6600022	M6	0.5	0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.072	146	0	0	NA	XqA1.1	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr9	103343982	103343982	T	C	ENSMUST00000035164.9	1	ENSMUSG00000032555	missense	S/P	1269	Topbp1	ENSMUST00000035164.9:c.3805T>C	ENSMUSP00000035164.3:p.Ser1269Pro	H-2-Kb	8	6	6	YVFQMPSL	YVFQMSSL	NetMHCpan	89.7	53.6	0.598	70	0.086	134.991	77.001	0.57	65.95	140.12	53.6	89.7	95.66211974	137.3219621	88.05215715	132.6600022	M6	0.971428571	0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.125	70	64	7	0.109375	9qF1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.670595166	sgMsh2	cell line
chrX	8273656	8273656	T	A	ENSMUST00000033512.10	1	ENSMUSG00000031170	missense	I/N	140	Slc38a5	ENSMUST00000033512.10:c.419T>A	ENSMUSP00000033512.4:p.Ile140Asn	H-2-Kb	8	10	2	INICLHNV	IIICLHNV	NetMHCpan	217.8	441.4	2.027	116	0.371	286.068	322.017	1.126	373.8	423.14	441.4	217.8	223.2235446	248.7367755	270.2340064	323.3999884	M6	0.685714286	0.728571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.359	116	0	0	NA	XqA1.1	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chrX	94197377	94197377	G	A	ENSMUST00000050328.14	1	ENSMUSG00000035150	missense	P/S	365	Eif2s3x	ENSMUST00000050328.14:c.1093C>T	ENSMUSP00000059395.8:p.Pro365Ser	H-2-Kb	8	10	2	LSEIFTEL	LPEIFTEL	SMMPMBEC	207.367	1491.901	7.194	96	0.427	351.034	2982.81	8.497	13083.12	456.6	3863.1	385.3	2102.519343	316.7670499	1491.900983	207.3671696	M6	0.371428571	0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.407	96	3	2	0.666666667	XqC3	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr9	108052065	108052065	A	G	ENSMUST00000162355.7	1	ENSMUSG00000041528	missense	V/A	1271	Rnf123	ENSMUST00000162355.7:c.3812T>C	ENSMUSP00000125745.1:p.Val1271Ala	H-2-Kb	8	8	4	ISAAFQPC	ISAVFQPC	SMM	176.092	168.943	0.959	188	0.037	417.672	294.935	0.706	357.2	561.35	396.1	585.7	168.9429215	176.0921516	232.6697911	273.9933359	M6	0.428571429	0.714285714	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.04	188	34	2	0.058823529	9qF1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.214590453	sgMsh2	cell line
chr9	124028825	124028825	T	C	ENSMUST00000039171.8	1	ENSMUSG00000035448	missense	Y/H	66	Ccr3	ENSMUST00000039171.8:c.196T>C	ENSMUSP00000039107.7:p.Tyr66His	H-2-Kb	8	7	5	ILIKHRKL	ILIKYRKL	SMMPMBEC	326.392	75.464	0.231	173	0.243	400.409	61.132	0.153	42.64	603.41	46.8	412.9	100.1705365	387.9180607	75.46403103	326.3923717	M6	-0.485714286	-0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.247	173	0	0	NA	9qF4	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chrX	20644940	20644940	A	T	ENSMUST00000115374.7	1	ENSMUSG00000031060	missense	Q/L	267	Rbm10	ENSMUST00000115374.7:c.800A>T	ENSMUSP00000111032.1:p.Gln267Leu	H-2-Kb	8	9	3	LSLGLLPL	LSQGLLPL	SMMPMBEC	348.931	945.671	2.71	63	0.397	402.308	1359.735	3.38	2509.64	710.55	1773.8	422.9	913.5661511	381.7156799	945.6708451	348.9313575	M6	1.771428571	1.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.4	63	44	19	0.431818182	XqA1.3	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr9	105418083	105418083	CA	C	ENSMUST00000085133.12	1	ENSMUSG00000032570	FS	F/X	851	Atp2c1	ENSMUST00000085133.12:c.2553del	ENSMUSP00000082220.6:p.Phe851LeufsTer7	H-2-Kb	8	4	8	TFTCFVFL	TFTCFVFF	SMM	146.467	2380.894	16.255	205	0.073	393.785	3114.872	7.91	4770.82	1201.85	3759.5	590.9	2380.893668	146.4670721	2470.244836	196.6708524	M6	2.6	2.6	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.066	205	111	3	0.027027027	9qF1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.354074247	sgMsh2	cell line
chr9	108112472	108112472	G	A	ENSMUST00000035208.13	5	ENSMUSG00000032589	missense	S/L	2027	Bsn	ENSMUST00000035208.13:c.6080C>T	ENSMUSP00000035208.6:p.Ser2027Leu	H-2-Kb	9	6	6	SSLKHLYSL	SSLKHSYSL	NetMHCpan	42.7	94.9	2.222	98	0.214	92.023	135.774	1.475	86.57	46.29	94.9	42.7	176.6485187	137.7558339	250.7552301	166.0542517	M6	0.314285714	0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.223	98	0	0	NA	9qF1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	105418083	105418083	CA	C	ENSMUST00000085133.12	1	ENSMUSG00000032570	FS	F/X	851	Atp2c1	ENSMUST00000085133.12:c.2553del	ENSMUSP00000082220.6:p.Phe851LeufsTer7	H-2-Kb	9	3	9	MTFTCFVFL	MTFTCFVFF	NetMHC	62.13	426.85	6.87	205	0.073	106.964	362.117	3.385	426.85	62.13	405	69.3	319.2346324	189.282298	250.1785091	144.6272072	M6	2.6	2.6	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.066	205	111	3	0.027027027	9qF1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.354074247	sgMsh2	cell line
chr9	91364112	91364112	GA	G	ENSMUST00000034927.12	1	ENSMUSG00000032368	FS	F/X	302	Zic1	ENSMUST00000034927.12:c.906del	ENSMUSP00000034927.6:p.Cys304AlafsTer78	H-2-Kb	9	16	0	LAAARFSRV	NA	NetMHC	139.71	NA	NA	152	0.237	245.072	NA	NA	NA	139.71	NA	284.4	NA	250.6744092	NA	239.4693856	M6	0.114285714	0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.238	152	0	0	NA	9qE3.2	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	91364112	91364112	GA	G	ENSMUST00000034927.12	1	ENSMUSG00000032368	FS	F/X	302	Zic1	ENSMUST00000034927.12:c.906del	ENSMUSP00000034927.6:p.Cys304AlafsTer78	H-2-Kb	9	77	0	ISPTRTPAL	NA	NetMHCpan	77.4	NA	NA	152	0.237	189.365	NA	NA	NA	156.27	NA	77.4	NA	244.4049514	NA	222.4590099	M6	-0.5	-0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.238	152	0	0	NA	9qE3.2	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chrX	48263598	48263598	T	A	ENSMUST00000080713.4	1	ENSMUSG00000063785	missense	F/Y	168	Utp14a	ENSMUST00000080713.4:c.503T>A	ENSMUSP00000079538.4:p.Phe168Tyr	H-2-Kb	9	9	3	SSYAPMEHV	SSFAPMEHV	NetMHC	205.1	379.33	1.849	60	0.383	345.153	552.142	1.6	379.33	205.1	420.2	264.6	684.0848933	425.7062242	755.5270188	499.1717511	M6	-0.242857143	-0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.389	60	55	17	0.309090909	XqA5	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr9	83847153	83847153	T	A	ENSMUST00000070326.13	1	ENSMUSG00000038379	missense	L/M	330	Ttk	ENSMUST00000070326.13:c.988T>A	ENSMUSP00000064839.7:p.Leu330Met	H-2-Kb	9	8	4	TIYMKDSLV	TIYLKDSLV	SMMPMBEC	175.085	170.706	0.975	138	0.268	199.929	188.083	0.941	205.46	216.58	1000.8	778.6	152.0932709	183.2778578	170.7064772	175.0854271	M6	0.057142857	0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.272	138	17	5	0.294117647	9qE2	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chr9	87707833	87707833	A	T	ENSMUST00000034991.7	1	ENSMUSG00000032419	missense	Y/N	351	Tbx18	ENSMUST00000034991.7:c.1051T>A	ENSMUSP00000034991.7:p.Tyr351Asn	H-2-Kb	9	10	2	SNAFWRPSL	SYAFWRPSL	NetMHCpan	127.5	399.5	3.133	118	0.237	289.697	603.78	2.084	646.37	260.16	399.5	127.5	561.1900987	319.2346324	673.3641643	385.7003207	M6	0.085714286	0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	118	0	0	NA	9qE3.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	sgMsh2	cell line
chrX	9849913	9849913	T	C	ENSMUST00000057113.2	NA	ENSMUSG00000048994	missense	S/P	55	H2al3	ENSMUST00000057113.2:c.163T>C	ENSMUSP00000052025.1:p.Ser55Pro	H-2-Kb	9	6	6	LNYVTPSIL	LNYVTSSIL	SMM	217.325	118.334	0.545	132	0.083	286.985	138.425	0.482	151.65	320.37	125.2	253.6	118.334124	217.325156	242.8007366	383.9281887	M6	1.157142857	1.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.095	132	0	0	NA	XqA1.1	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr9	108563479	108563479	A	G	ENSMUST00000081111.13	1	ENSMUSG00000062867	missense	K/R	293	Impdh2	ENSMUST00000081111.13:c.878A>G	ENSMUSP00000079888.8:p.Lys293Arg	H-2-Kb	9	7	5	YIKERYPSL	YIKEKYPSL	SMMPMBEC	191.977	301.474	1.57	215	0.084	279.752	401.364	1.435	594.46	397.74	453.5	326.1	349.2287585	233.4049166	301.4740949	191.9773533	M6	-1.685714286	-1.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.085	215	205	9	0.043902439	9qF2	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.456004713	sgMsh2	cell line
chrX	167306156	167306156	A	G	ENSMUST00000112161.7	1	ENSMUSG00000044583	missense	M/T	778	Tlr7	ENSMUST00000112161.7:c.2333T>C	ENSMUSP00000107787.1:p.Met778Thr	H-2-Db	9	4	8	NVLNNLETL	NVLNNLEML	NetMHCpan	106.4	677.9	6.371	180	0.378	138.652	575.836	4.153	938.34	167.72	677.9	106.4	433.1317299	133.2355135	473.7726652	144.0688203	M6	0.028571429	0.085714286	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.366	180	0	0	NA	XqF5	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chrX	106930585	106930585	G	A	ENSMUST00000060576.7	1	ENSMUSG00000049929	missense	S/N	125	Lpar4	ENSMUST00000060576.7:c.374G>A	ENSMUSP00000053986.7:p.Ser125Asn	H-2-Kb	8	5	7	LTNIYGNM	LTNIYGSM	SMMPMBEC	202.647	463.17	2.286	102	0.333	240.886	656.883	2.727	1047.53	265.63	783.2	426.7	530.5667136	216.1424152	463.16955	202.6469166	M6	-0.428571429	-0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.353	102	9	0	0	XqD	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chrX	153392828	153392828	A	T	ENSMUST00000112574.8	1	ENSMUSG00000041649	missense	D/V	343	Klf8	ENSMUST00000112574.8:c.1028A>T	ENSMUSP00000108193.2:p.Asp343Val	H-2-Kb	9	5	7	RSFSRSVHL	RSFSRSDHL	NetMHCpan	26.9	121.5	4.517	32	0.406	59.407	161.552	2.719	166.75	32.89	121.5	26.9	156.3543614	85.92311238	215.8986864	112.2664526	M6	0.214285714	0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.424	32	2	0	0	XqF3	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chrX	135613266	135613266	C	T	ENSMUST00000113159.7	5	ENSMUSG00000031411	missense	E/K	425	Prame	ENSMUST00000113159.7:c.1273G>A	ENSMUSP00000108784.1:p.Glu425Lys	H-2-Kb	9	11	1	KQWQFHGRL	EQWQFHGRL	NetMHC	34.51	455.42	13.197	131	0.504	226.444	653.524	2.886	455.42	34.51	390.2	77.7	1300.498932	478.7513372	851.6281337	375.1889162	M6	-0.842857143	-0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.492	131	0	0	NA	XqF1	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	sgMsh2	cell line
chr1	26683454	26683454	T	A	ENSMUST00000097801.3	1	ENSMUSG00000073722	missense	T/S	882	4931408C20Rik	ENSMUST00000097801.3:c.2644A>T	ENSMUSP00000095410.3:p.Thr882Ser	H-2-Db	9	11	1	SAVELQVLI	TAVELQVLI	SMM	277.089	572.295	2.065	160	0.181	359.953	1249.888	3.472	1927.48	412.6	2926.1	1007.5	572.2950638	277.089456	515.9053125	307.3052643	M7_p20	1.928571429	1.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe	3	0.189	160	0	0	NA	1qA5	chr1-3216742-84929848	4	3	1	0.9	4.205340083	NA	1	0.883121418	sgMsh2	cell line
chr1	45817269	45817269	GC	G	ENSMUST00000027139.14	1	ENSMUSG00000025995	FS	A/X	484	Wdr75	ENSMUST00000027139.14:c.1452del	ENSMUSP00000027139.8:p.Ile485LeufsTer35	H-2-Db	9	10	3	KALLGLVTL	NA	SMMPMBEC	372.881	NA	NA	78	0.179	403.5	NA	NA	NA	415.6	NA	482.5	NA	391.3992598	NA	372.8807814	M7_p20	2.614285714	2.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.18	78	0	0	NA	1qC1.1	chr1-3216742-84929848	4	3	1	0.9	4.205340083	NA	1	0.841068017	sgMsh2	cell line
chr1	4352795	4352795	T	C	ENSMUST00000027032.5	1	ENSMUSG00000025900	missense	M/V	11	Rp1	ENSMUST00000027032.5:c.31A>G	ENSMUSP00000027032.4:p.Met11Val	H-2-Kb	8	7	5	TSFSVIHL	TSFSMIHL	NetMHC	20.73	12.72	0.614	113	0.257	35.302	20.485	0.58	12.72	20.73	14.5	31	29.90473787	40.43337559	26.4691503	39.60408646	M7_p20	1.5	1.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.235	113	0	0	NA	1qA1	chr1-3216742-84929848	4	3	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr1	88088110	88088110	A	G	ENSMUST00000113139.1	5	ENSMUSG00000089675	missense	T/A	82	Ugt1a8	ENSMUST00000113139.1:c.244A>G	ENSMUSP00000108764.1:p.Thr82Ala	H-2-Kb	8	8	4	VSYALEDL	VSYTLEDL	NetMHC	30	26.52	0.884	188	0.191	55.141	50.857	0.922	26.52	30	45.9	53.3	55.81359543	56.9823033	61.76465217	67.72359439	M7_p20	0.042857143	0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.215	188	0	0	NA	1qD	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr1	55078678	55078678	T	A	ENSMUST00000027123.14	1	ENSMUSG00000025980	missense	I/F	474	Hspd1	ENSMUST00000027123.14:c.1420A>T	ENSMUSP00000027123.8:p.Ile474Phe	H-2-Kb	8	7	5	RALKFPAM	RALKIPAM	NetMHC	57.84	5027.16	86.915	68	0.191	145.525	5762.283	39.597	5027.16	57.84	1724.8	71.9	6914.16915	219.1492557	6497.405923	259.8603386	M7_p20	0.942857143	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.196	68	0	0	NA	1qC1.2	chr1-3216742-84929848	4	3	1	0.9	4.205340083	NA	1	0.915829618	sgMsh2	cell line
chr1	135167045	135167045	T	C	ENSMUST00000027682.8	1	ENSMUSG00000026424	missense	I/V	154	Gpr37l1	ENSMUST00000027682.8:c.460A>G	ENSMUSP00000027682.8:p.Ile154Val	H-2-Kb	8	11	1	VVWHSYYL	IVWHSYYL	NetMHCpan	50.2	54.3	1.082	161	0.248	124.72	127.484	1.022	148.38	135.33	54.3	50.2	137.0061303	128.4517425	117.9614222	120.9873599	M7_p20	0.071428571	0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.261	161	0	0	NA	1qE4	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr1	116060165	116060165	A	G	ENSMUST00000043725.8	2	ENSMUSG00000070695	missense	K/R	142	Cntnap5a	ENSMUST00000043725.8:c.425A>G	ENSMUSP00000035732.8:p.Lys142Arg	H-2-Kb	8	6	6	SVVHHRLL	SVVHHKLL	SMM	427.307	882.551	2.065	256	0.25	446.527	895.276	2.005	1341.14	508.89	908	456.8	882.5513833	427.3069928	801.1982647	436.2545806	M7_p20	0.728571429	0.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.26	256	0	0	NA	1qE2.3	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr1	88266615	88266615	T	C	ENSMUST00000127446.1	1	ENSMUSG00000044783	missense	K/R	39	Hjurp	ENSMUST00000127446.1:c.116A>G	ENSMUSP00000118659.1:p.Lys39Arg	H-2-Kb	8	10	2	LRYLLCPL	LKYLLCPL	SMMPMBEC	254.531	174.478	0.685	378	0.071	415.298	339.24	0.817	519.01	550.22	498.7	566.9	179.7794304	280.3754606	174.4777291	254.5305993	M7_p20	0.928571429	0.928571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.066	378	0	0	NA	1qD	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	0.308391606	sgMsh2	cell line
chr1	119527237	119527237	T	C	ENSMUST00000183952.1	NA	ENSMUSG00000098923	missense	Y/H	243	Tmem185b	ENSMUST00000183952.1:c.727T>C	ENSMUSP00000139021.1:p.Tyr243His	H-2-Kb	8	11	1	HISIFIPL	YISIFIPL	SMMPMBEC	277.805	143.463	0.516	212	0.505	366.678	142.732	0.389	159.19	639.82	142	423.8	132.0504848	309.5565516	143.4630303	277.8049629	M7_p20	2.528571429	2.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.504	212	0	0	NA	1qE2.3	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr1	16369825	16369825	AT	A	ENSMUST00000162751.7	1	ENSMUSG00000025920	FS	N/X	364	Stau2	ENSMUST00000162751.7:c.1091del	ENSMUSP00000124505.1:p.Asn364MetfsTer67	H-2-Kb	8	42	0	VVQSLGFL	NA	SMM	288.895	NA	NA	142	0.275	454.137	NA	NA	NA	667.04	NA	566.5	NA	288.8949831	NA	341.7747702	M7_p20	1.414285714	1.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.261	142	0	0	NA	1qA3	chr1-3216742-84929848	4	3	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr1	45817269	45817269	GC	G	ENSMUST00000027139.14	1	ENSMUSG00000025995	FS	A/X	484	Wdr75	ENSMUST00000027139.14:c.1452del	ENSMUSP00000027139.8:p.Ile485LeufsTer35	H-2-Kb	8	34	0	KMVPYWQL	NA	NetMHCpan	155.2	NA	NA	78	0.179	418.161	NA	NA	NA	807.81	NA	155.2	NA	409.0157201	NA	427.3069928	M7_p20	0.371428571	0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.18	78	0	0	NA	1qC1.1	chr1-3216742-84929848	4	3	1	0.9	4.205340083	NA	1	0.841068017	sgMsh2	cell line
chr1	133658840	133658840	T	G	ENSMUST00000179598.3	1	ENSMUSG00000094410	missense	N/T	253	Gm38394	ENSMUST00000179598.3:c.758A>C	ENSMUSP00000136026.1:p.Asn253Thr	H-2-Kb	9	10	2	STIVKHALI	SNIVKHALI	NetMHC	100.82	69.65	0.691	133	0.271	310.42	175.923	0.567	69.65	100.82	127.4	281.8	224.4450336	352.4601324	231.8729034	339.0392667	M7_p20	1.671428571	1.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.269	133	0	0	NA	1qE4	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr1	26687339	26687339	C	T	ENSMUST00000097801.3	1	ENSMUSG00000073722	missense	A/T	30	4931408C20Rik	ENSMUST00000097801.3:c.88G>A	ENSMUSP00000095410.3:p.Ala30Thr	H-2-Kb	9	8	4	ISFTIMCGV	ISFAIMCGV	NetMHCpan	74.6	91	1.22	519	0.042	250.461	298.272	1.191	128.54	108.05	91	74.6	533.469998	476.5516746	468.0044688	392.8710251	M7_p20	2.114285714	2.114285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.042	519	0	0	NA	1qA5	chr1-3216742-84929848	4	3	1	0.9	4.205340083	NA	1	0.196249204	sgMsh2	cell line
chr1	110925087	110925087	A	T	ENSMUST00000094626.4	1	ENSMUSG00000047216	missense	Y/N	373	Cdh19	ENSMUST00000094626.4:c.1117T>A	ENSMUSP00000092210.3:p.Tyr373Asn	H-2-Kb	9	5	7	VFLLPYNIL	VFLLPYYIL	SMM	98.653	114.054	1.156	182	0.308	176.295	208.175	1.181	208.26	179.11	561.9	499.8	114.0538632	98.65293264	208.0894201	173.4802343	M7_p20	1.357142857	1.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.315	182	0	0	NA	1qE2.1	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr1	5916369	5916369	A	G	ENSMUST00000044180.4	NA	ENSMUSG00000033774	missense	Y/H	309	Npbwr1	ENSMUST00000044180.4:c.925T>C	ENSMUSP00000046233.4:p.Tyr309His	H-2-Kb	9	6	6	LNPFLHAFL	LNPFLYAFL	NetMHCpan	98	28.5	0.291	67	0.254	405.724	118.863	0.293	40.37	181.58	28.5	98	212.3782315	743.2073569	197.3558481	629.8686601	M7_p20	1.457142857	1.457142857	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.266	67	0	0	NA	1qA1	chr1-3216742-84929848	4	3	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr1	123445299	123445299	A	G	ENSMUST00000112606.7	1	ENSMUSG00000036815	missense	I/T	204	Dpp10	ENSMUST00000112606.7:c.611T>C	ENSMUSP00000108225.1:p.Ile204Thr	H-2-Kb	9	3	9	LIYIFENNT	LIYIFENNI	NetMHC	184.51	25.12	0.136	125	0.568	233.18	68.152	0.292	25.12	184.51	41	757.3	95.3037523	221.8758325	112.5252535	244.4837509	M7_p20	-0.742857143	1.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.53	125	0	0	NA	1qE2.3	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr1	119527237	119527237	T	C	ENSMUST00000183952.1	NA	ENSMUSG00000098923	missense	Y/H	243	Tmem185b	ENSMUST00000183952.1:c.727T>C	ENSMUSP00000139021.1:p.Tyr243His	H-2-Kb	9	10	2	SHISIFIPL	SYISIFIPL	NetMHCpan	99	117	1.182	212	0.505	224.362	220.237	0.982	296.53	185.63	117	99	189.7186388	263.0934282	250.7552301	331.3217908	M7_p20	2.528571429	2.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.504	212	0	0	NA	1qE2.3	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr1	88088110	88088110	A	G	ENSMUST00000113139.1	5	ENSMUSG00000089675	missense	T/A	82	Ugt1a8	ENSMUST00000113139.1:c.244A>G	ENSMUSP00000108764.1:p.Thr82Ala	H-2-Kb	9	4	8	KTYSVSYAL	KTYSVSYTL	NetMHCpan	171.1	184.7	1.079	188	0.191	331.488	372.748	1.124	270.04	215.15	184.7	171.1	475.4556362	447.8267173	877.5058087	815.1734005	M7_p20	0.8	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.215	188	0	0	NA	1qD	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr1	45817269	45817269	GC	G	ENSMUST00000027139.14	1	ENSMUSG00000025995	FS	A/X	484	Wdr75	ENSMUST00000027139.14:c.1452del	ENSMUSP00000027139.8:p.Ile485LeufsTer35	H-2-Kb	9	34	0	KMVPYWQLV	NA	NetMHC	238.19	NA	NA	78	0.179	283.842	NA	NA	NA	238.19	NA	267	NA	300.6837791	NA	352.5737704	M7_p20	0.7	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.18	78	0	0	NA	1qC1.1	chr1-3216742-84929848	4	3	1	0.9	4.205340083	NA	1	0.841068017	sgMsh2	cell line
chr1	62344084	62344084	A	C	ENSMUST00000075374.9	5	ENSMUSG00000052062	missense	E/A	779	Pard3b	ENSMUST00000075374.9:c.2336A>C	ENSMUSP00000074837.3:p.Glu779Ala	H-2-Kb	9	9	3	CNASFRAAI	CNESFRAAI	NetMHCpan	230.4	1751.1	7.6	40	0.2	372.631	1474.805	3.958	925.35	239.31	1751.1	230.4	1300.498932	505.9527957	1649.111423	995.9785837	M7_p20	1.057142857	1.057142857	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.214	40	0	0	NA	1qC2	chr1-3216742-84929848	4	3	1	0.9	4.205340083	NA	1	0.99993642	sgMsh2	cell line
chr1	135272375	135272375	A	G	ENSMUST00000077340.13	1	ENSMUSG00000041926	missense	Y/H	281	Rnpep	ENSMUST00000077340.13:c.841T>C	ENSMUSP00000076564.7:p.Tyr281His	H-2-Kb	9	11	1	HVWGRYDLL	YVWGRYDLL	SMM	166.767	106.441	0.638	71	0.31	246.549	111.966	0.454	117.49	325.12	161.1	476	106.4412583	166.7669554	99.36878965	167.9770694	M7_p20	-0.428571429	-0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.296	71	0	0	NA	1qE4	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr1	16369825	16369825	AT	A	ENSMUST00000162751.7	1	ENSMUSG00000025920	FS	N/X	364	Stau2	ENSMUST00000162751.7:c.1091del	ENSMUSP00000124505.1:p.Asn364MetfsTer67	H-2-Kb	9	64	0	LMFIKRWKL	NA	SMMPMBEC	146.977	NA	NA	142	0.275	253.231	NA	NA	NA	436.85	NA	281.5	NA	224.9624328	NA	146.9772103	M7_p20	-0.3	0.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.261	142	0	0	NA	1qA3	chr1-3216742-84929848	4	3	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr1	135167045	135167045	T	C	ENSMUST00000027682.8	1	ENSMUSG00000026424	missense	I/V	154	Gpr37l1	ENSMUST00000027682.8:c.460A>G	ENSMUSP00000027682.8:p.Ile154Val	H-2-Kb	9	10	2	CVVWHSYYL	CIVWHSYYL	SMM	366.53	378.538	1.033	161	0.248	457.755	527.6	1.153	517.1	471.51	538.1	444	378.5384504	366.5303993	726.524058	713.2634994	M7_p20	0.071428571	0.671428571	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.261	161	0	0	NA	1qE4	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr10	5022126	5022126	T	A	ENSMUST00000215295.1	5	ENSMUSG00000096054	missense	I/F	8761	Syne1	ENSMUST00000215295.1:c.26281A>T	ENSMUSP00000150262.1:p.Ile8761Phe	H-2-Db	9	11	1	FGLTCLVPM	IGLTCLVPM	NetMHC	60.15	506.36	8.418	33	0.273	306.28	885.956	2.893	506.36	60.15	862.9	223.9	1229.192778	523.1424958	909.0128028	388.6601375	M7_p20	1.985714286	2.285714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.261	33	0	0	NA	10qA1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr10	34127600	34127600	T	C	ENSMUST00000062784.7	1	ENSMUSG00000046031	missense	T/A	104	Calhm6	ENSMUST00000062784.7:c.310A>G	ENSMUSP00000051575.6:p.Thr104Ala	H-2-Kb	8	10	2	MAAAFAPL	MTAAFAPL	NetMHC	6.89	7.12	1.033	10	0.6	13.206	10.773	0.816	7.12	6.89	12.9	11.9	9.391608928	14.51242539	12.15458122	19.21940772	M7_p20	1.742857143	1.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.571	10	0	0	NA	10qB1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr10	50754122	50754122	G	T	ENSMUST00000035606.9	5	ENSMUSG00000038774	missense	S/I	1769	Ascc3	ENSMUST00000035606.9:c.5306G>T	ENSMUSP00000036726.8:p.Ser1769Ile	H-2-Kb	8	8	4	MNPIYYSL	MNPSYYSL	NetMHC	10.83	12.27	1.133	216	0.222	32.613	36.465	1.118	12.27	10.83	28.9	21.7	44.02911945	43.52512229	62.62388407	64.23030732	M7_p20	-0.028571429	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.234	216	0	0	NA	10qB3	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr1	174069592	174069592	T	C	ENSMUST00000213425.1	5	ENSMUSG00000050134	missense	L/P	98	Olfr430	ENSMUST00000213425.1:c.293T>C	ENSMUSP00000150451.1:p.Leu98Pro	H-2-Kb	8	5	7	ISFAGCPL	ISFAGCLL	NetMHC	17.6	52.15	2.963	165	0.194	21.293	53.599	2.517	52.15	17.6	37	22.6	64.52678095	24.36351806	55.04780419	19.98664966	M7_p20	1.157142857	1.257142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.207	165	0	0	NA	1qH3	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	0.967228219	sgMsh2	cell line
chr10	20357669	20357669	A	C	ENSMUST00000169712.2	1	ENSMUSG00000019992	missense	N/T	328	Mtfr2	ENSMUST00000169712.2:c.983A>C	ENSMUSP00000129315.1:p.Asn328Thr	H-2-Kb	8	6	6	VSLISTAL	VSLISNAL	NetMHC	49.7	94.67	1.905	125	0.2	79.504	112.755	1.418	94.67	49.7	172.8	90.5	87.64759423	68.50779666	130.8398387	93.0550614	M7_p20	1.657142857	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.207	125	0	0	NA	10qA3	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	0.967228219	sgMsh2	cell line
chr1	194780562	194780562	A	G	ENSMUST00000027952.11	1	ENSMUSG00000026640	missense	H/R	879	Plxna2	ENSMUST00000027952.11:c.2636A>G	ENSMUSP00000027952.5:p.His879Arg	H-2-Kb	8	8	4	VTIRGVNL	VTIHGVNL	NetMHC	74.49	317.58	4.263	166	0.175	88.972	181.985	2.045	317.58	74.49	167.3	91.3	196.6708524	105.3755853	154.0777756	86.64430052	M7_p20	0.485714286	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.185	166	0	0	NA	1qH6	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	0.864431017	sgMsh2	cell line
chr1	172290712	172290712	T	A	ENSMUST00000085913.10	1	ENSMUSG00000007097	missense	I/F	132	Atp1a2	ENSMUST00000085913.10:c.394A>T	ENSMUSP00000083077.4:p.Ile132Phe	H-2-Kb	8	9	3	LGFVLAAV	LGIVLAAV	NetMHC	85.07	805.62	9.47	138	0.217	128.59	785.379	6.108	805.62	85.07	822.4	123.6	765.1384027	157.666708	633.4903447	133.5795574	M7_p20	2.6	2.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.218	138	0	0	NA	1qH3	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr1	174836908	174836908	G	A	ENSMUST00000055294.3	1	ENSMUSG00000050069	missense	P/L	125	Grem2	ENSMUST00000055294.3:c.374C>T	ENSMUSP00000049640.3:p.Pro125Leu	H-2-Kb	8	4	8	QSCAFCKL	QSCAFCKP	SMM	117.961	2855.88	24.21	65	0.2	147.089	12242.245	83.23	25277.15	156.54	20913.9	503.9	2855.880296	117.9614222	3570.590129	137.6385219	M7_p20	1.242857143	1.242857143	TRUE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.212	65	0	0	NA	1qH3	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	0.99059122	sgMsh2	cell line
chr1	191058906	191058906	T	C	ENSMUST00000110893.9	1	ENSMUSG00000026632	missense	N/S	57	Tatdn3	ENSMUST00000110893.9:c.170A>G	ENSMUSP00000106518.3:p.Asn57Ser	H-2-Kb	8	11	1	SGFVLPCL	NGFVLPCL	SMMPMBEC	163.961	930.551	5.675	131	0.313	168.271	1269.873	7.547	5091.47	186.82	1466.4	167.6	1073.346637	168.9429215	930.550614	163.9607892	M7_p20	2.157142857	2.157142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.312	131	0	0	NA	1qH6	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr10	57512133	57512133	C	T	ENSMUST00000079833.5	1	ENSMUSG00000019878	missense	L/F	497	Hsf2	ENSMUST00000079833.5:c.1489C>T	ENSMUSP00000078761.4:p.Leu497Phe	H-2-Kb	8	10	2	TFFYLCEL	TLFYLCEL	NetMHCpan	111.4	155.6	1.397	195	0.241	267.258	684.998	2.563	919.06	328.13	155.6	111.4	740.8665723	252.1970487	629.1294278	282.3189304	M7_p20	1.557142857	1.557142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.248	195	0	0	NA	10qB4	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr10	53319685	53319685	G	T	ENSMUST00000220443.1	5	ENSMUSG00000038594	missense	P/H	352	Cep85l	ENSMUST00000220443.1:c.1055C>A	ENSMUSP00000151909.1:p.Pro352His	H-2-Kb	8	7	5	QSYSHPGF	QSYSPPGF	NetMHCpan	235.6	2018.4	8.567	122	0.279	446.98	2908.15	6.506	2920.69	375.47	2018.4	235.6	2895.609548	518.4895408	3645.356443	637.88149	M7_p20	-0.757142857	-0.757142857	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.28	122	0	0	NA	10qB3	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr10	21382316	21382316	C	T	ENSMUST00000042699.13	1	ENSMUSG00000037542	missense	T/I	104	Aldh8a1	ENSMUST00000042699.13:c.311C>T	ENSMUSP00000038878.7:p.Thr104Ile	H-2-Kb	8	4	8	KTLTLARI	KTLTLART	SMMPMBEC	381.716	1249.511	3.273	98	0.286	479.453	3929.981	8.197	5879.62	507.32	7377.9	548.4	1980.341096	451.5855118	1249.510759	381.7156799	M7_p20	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.327	98	0	0	NA	10qA3	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr1	154398634	154398634	G	A	ENSMUST00000187541.6	1	ENSMUSG00000004110	missense	A/V	2194	Cacna1e	ENSMUST00000187541.6:c.6581C>T	ENSMUSP00000140937.1:p.Ala2194Val	H-2-Kb	8	5	7	ISEPYLVL	ISEPYLAL	SMMPMBEC	118.779	52.813	0.445	41	0.317	233.323	72.186	0.309	88.43	664.92	136.6	334.9	55.94225905	131.7467771	52.8128981	118.7790917	M7_p20	0.657142857	0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.285	41	0	0	NA	1qG3	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr10	34127600	34127600	T	C	ENSMUST00000062784.7	1	ENSMUSG00000046031	missense	T/A	104	Calhm6	ENSMUST00000062784.7:c.310A>G	ENSMUSP00000051575.6:p.Thr104Ala	H-2-Kb	9	9	3	SMAAAFAPL	SMTAAFAPL	NetMHC	17.68	20.57	1.163	10	0.6	69.176	101.255	1.464	20.57	17.68	48.3	32.4	154.2090991	105.9522052	210.0148478	158.2158541	M7_p20	1.742857143	1.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.571	10	0	0	NA	10qB1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr1	158247106	158247106	G	T	ENSMUST00000004133.10	1	ENSMUSG00000004031	missense	P/T	482	Brinp2	ENSMUST00000004133.10:c.1444C>A	ENSMUSP00000004133.8:p.Pro482Thr	H-2-Kb	9	11	1	TGYVLAQGL	PGYVLAQGL	NetMHC	57.8	2756.36	47.688	83	0.193	238.234	1947.321	8.174	2756.36	57.8	3184.7	75.5	738.0911534	400.9682638	1138.282345	484.4511598	M7_p20	1.2	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	83	0	0	NA	1qH1	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	0.934520019	sgMsh2	cell line
chr10	57512133	57512133	C	T	ENSMUST00000079833.5	1	ENSMUSG00000019878	missense	L/F	497	Hsf2	ENSMUST00000079833.5:c.1489C>T	ENSMUSP00000078761.4:p.Leu497Phe	H-2-Kb	9	9	3	ATFFYLCEL	ATLFYLCEL	NetMHCpan	16	70.9	4.431	195	0.241	83.58	243.834	2.917	237.49	76.95	70.9	16	258.8868552	92.28051297	250.1785091	90.20902731	M7_p20	1.557142857	1.671428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.248	195	0	0	NA	10qB4	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr1	174836908	174836908	G	A	ENSMUST00000055294.3	1	ENSMUSG00000050069	missense	P/L	125	Grem2	ENSMUST00000055294.3:c.374C>T	ENSMUSP00000049640.3:p.Pro125Leu	H-2-Kb	9	6	6	CAFCKLQRV	CAFCKPQRV	NetMHC	190.08	651.95	3.43	65	0.2	267.939	693.443	2.588	651.95	190.08	1302.8	373	537.1678354	228.091972	734.93681	307.7868068	M7_p20	0.2	0.857142857	TRUE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.212	65	0	0	NA	1qH3	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	0.99059122	sgMsh2	cell line
chr10	50754122	50754122	G	T	ENSMUST00000035606.9	5	ENSMUSG00000038774	missense	S/I	1769	Ascc3	ENSMUST00000035606.9:c.5306G>T	ENSMUSP00000036726.8:p.Ser1769Ile	H-2-Kb	9	7	5	IMNPIYYSL	IMNPSYYSL	NetMHCpan	106.8	122.5	1.147	216	0.222	213.697	155.456	0.727	120.49	198.25	122.5	106.8	188.4126249	229.1447967	231.3396105	261.9690589	M7_p20	-0.028571429	0.457142857	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.234	216	0	0	NA	10qB3	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr1	174250568	174250568	A	G	ENSMUST00000214725.1	5	ENSMUSG00000050788	missense	F/L	120	Olfr419	ENSMUST00000214725.1:c.358T>C	ENSMUSP00000149512.1:p.Phe120Leu	H-2-Kb	9	9	3	MGLDRYVAI	MGFDRYVAI	NetMHCpan	176	25.6	0.145	115	0.235	267.445	86.898	0.325	67.32	239.6	25.6	176	149.3172559	418.8996524	106.4755765	295.2908568	M7_p20	0.714285714	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	115	0	0	NA	1qH3	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr10	62563277	62563277	A	G	ENSMUST00000065887.13	1	ENSMUSG00000036955	missense	Y/H	313	Kif1bp	ENSMUST00000065887.13:c.937T>C	ENSMUSP00000065160.7:p.Tyr313His	H-2-Kb	9	7	5	CWIKHCLTL	CWIKYCLTL	SMM	252.412	202.353	0.802	275	0.225	411.623	333.985	0.811	328.15	396.42	599.6	854.8	202.3531643	252.4120012	339.8208329	426.8251484	M7_p20	0.971428571	0.971428571	TRUE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	275	0	0	NA	10qB4	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr10	23897365	23897365	T	C	ENSMUST00000041416.7	1	ENSMUSG00000037440	missense	Y/H	97	Vnn1	ENSMUST00000041416.7:c.289T>C	ENSMUSP00000040599.7:p.Tyr97His	H-2-Kb	9	7	5	TIYPHLEEI	TIYPYLEEI	NetMHCpan	162.8	59.8	0.367	59	0.203	280.695	187.481	0.668	155.05	490.72	59.8	162.8	228.6177783	285.1740477	219.9125427	276.216743	M7_p20	-0.685714286	-0.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.222	59	0	0	NA	10qA4	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr10	83191774	83191774	T	C	ENSMUST00000040110.7	1	ENSMUSG00000034612	missense	V/A	345	Chst11	ENSMUST00000040110.7:c.1034T>C	ENSMUSP00000045349.7:p.Val345Ala	H-2-Db	9	12	3	YSAPNYLKL	YSVPNYLKL	NetMHCpan	122.5	52.9	0.432	27	0.222	309.537	121.64	0.393	26.34	143.06	52.9	122.5	190.3794203	476.0143004	241.3070442	699.1494173	M7_p20	-0.128571429	-0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.272	27	0	0	NA	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr10	79997840	79997840	AC	A	ENSMUST00000171637.7	1	ENSMUSG00000035722	FS	H/X	46	Abca7	ENSMUST00000171637.7:c.143del	ENSMUSP00000128121.1:p.Pro48LeufsTer30	H-2-Db	9	5	9	VAVRHSHPL	VAVRHSHPP	NetMHC	149.41	14883.63	99.616	30	0.267	252.796	7089.259	28.043	14883.63	149.41	9705.3	158.4	4473.217343	377.2419664	4391.066356	347.1922322	M7_p20	-0.757142857	-0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.311	30	0	0	NA	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr10	79997840	79997840	AC	A	ENSMUST00000171637.7	1	ENSMUSG00000035722	FS	H/X	46	Abca7	ENSMUST00000171637.7:c.143del	ENSMUSP00000128121.1:p.Pro48LeufsTer30	H-2-Db	9	14	0	WSITNATFQ	NA	SMMPMBEC	202.568	NA	NA	30	0.267	296.897	NA	NA	NA	220.01	NA	4624.1	NA	373.7833913	NA	202.5676081	M7_p20	0.1	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.311	30	0	0	NA	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr10	80730907	80730907	A	C	ENSMUST00000020420.8	1	ENSMUSG00000020198	missense	I/M	80	Ap3d1	ENSMUST00000020420.8:c.240T>G	ENSMUSP00000020420.7:p.Ile80Met	H-2-Db	9	5	7	WAAFNIMEV	WAAFNIIEV	NetMHCpan	142.9	122.7	0.859	290	0.217	398.595	303.122	0.76	236.74	407.59	122.7	142.9	369.5047282	389.6009436	406.9771255	433.0818667	M7_p20	1.171428571	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	290	0	0	NA	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr10	123163632	123163632	AT	A	ENSMUST00000220377.1	1	ENSMUSG00000020124	FS	N/X	215	Usp15	ENSMUST00000220377.1:c.644del	ENSMUSP00000151244.1:p.Asn215MetfsTer44	H-2-Db	9	36	0	RSLLHLYQI	NA	SMMPMBEC	352.834	NA	NA	233	0.176	466.615	NA	NA	NA	481.63	NA	451.6	NA	491.6091981	NA	352.8336521	M7_p20	1.128571429	1.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.196	233	0	0	NA	10qD2	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	0.915829618	sgMsh2	cell line
chr10	77981777	77981777	C	T	ENSMUST00000105397.9	1	ENSMUSG00000020284	missense	R/C	113	Cfap410	ENSMUST00000105397.9:c.337C>T	ENSMUSP00000101036.3:p.Arg113Cys	H-2-Db	9	8	4	TVLCNLPHL	TVLRNLPHL	NetMHCpan	113.4	174.4	1.538	34	0.147	293.191	303.472	1.035	731.72	581.86	174.4	113.4	306.6337823	278.3684428	300.3101425	308.0136761	M7_p20	0.8	1.214285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	34	0	0	NA	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr10	103404331	103404331	A	G	ENSMUST00000074204.11	1	ENSMUSG00000019894	missense	Q/R	305	Slc6a15	ENSMUST00000074204.11:c.914A>G	ENSMUSP00000073829.4:p.Gln305Arg	H-2-Kb	8	9	3	ATRVFFAL	ATQVFFAL	NetMHC	11.81	16.33	1.383	172	0.169	30.496	37.025	1.214	16.33	11.81	34.9	33.2	39.15074224	29.02284617	44.8476819	31.96980594	M7_p20	1.457142857	1.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.201	172	0	0	NA	10qD1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	0.939192619	sgMsh2	cell line
chr10	83191774	83191774	T	C	ENSMUST00000040110.7	1	ENSMUSG00000034612	missense	V/A	345	Chst11	ENSMUST00000040110.7:c.1034T>C	ENSMUSP00000045349.7:p.Val345Ala	H-2-Kb	8	13	2	SAPNYLKL	SVPNYLKL	NetMHC	34.27	40.77	1.19	27	0.222	109.37	115.98	1.06	40.77	34.27	68	57.4	163.9607892	161.3392375	188.2521739	203.5822922	M7_p20	-0.128571429	-0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.272	27	0	0	NA	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr10	129462699	129462699	A	G	ENSMUST00000213329.1	5	ENSMUSG00000096497	missense	T/A	8	Olfr787	ENSMUST00000213329.1:c.22A>G	ENSMUSP00000149391.1:p.Thr8Ala	H-2-Kb	8	6	3	VIAEFVLL	VITEFVLL	NetMHCpan	30.7	45.4	1.479	273	0.311	39.298	45.805	1.166	35.18	37.22	45.4	30.7	46.21042896	41.37518989	60.91720937	60.35871704	M7_p20	2.485714286	2.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.321	273	0	0	NA	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr10	129160683	129160683	TA	T	ENSMUST00000214271.1	5	ENSMUSG00000061367	FS	F/X	100	Olfr771	ENSMUST00000214271.1:c.300del	ENSMUSP00000151108.1:p.Phe100LeufsTer7	H-2-Kb	8	6	6	VIQVFLLM	VIQVFFTD	NetMHC	93.83	5112.29	54.485	163	0.276	119.114	2777.307	23.316	5112.29	93.83	6812.6	118.9	412.800296	119.3273511	442.3234863	149.1900983	M7_p20	2.5	2.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.266	163	0	0	NA	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr10	128225954	128225954	T	C	ENSMUST00000026455.7	1	ENSMUSG00000025389	missense	F/L	25	Mip	ENSMUST00000026455.7:c.73T>C	ENSMUSP00000026455.7:p.Phe25Leu	H-2-Kb	8	7	5	LFYVLFGL	LFYVFFGL	SMMPMBEC	75.29	7.059	0.094	87	0.241	94.735	7.697	0.081	8.12	112.78	60.9	291.1	7.273442335	76.69022289	7.058948282	75.29046857	M7_p20	2.242857143	2.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.271	87	0	0	NA	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr10	109751457	109751457	G	T	ENSMUST00000032719.14	5	ENSMUSG00000020181	missense	S/Y	1556	Nav3	ENSMUST00000032719.14:c.4667C>A	ENSMUSP00000032719.7:p.Ser1556Tyr	H-2-Kb	8	9	3	LVYSTSSL	LVSSTSSL	NetMHCpan	80.5	5829.3	72.414	168	0.22	149.636	7355.059	49.153	10008.4	116.15	5829.3	80.5	8447.729517	238.6382195	6262.388407	183.1217795	M7_p20	0.514285714	0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.221	168	0	0	NA	10qD1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr10	125230903	125230903	G	A	ENSMUST00000211781.1	1	ENSMUSG00000020102	missense	A/V	289	Slc16a7	ENSMUST00000211781.1:c.866C>T	ENSMUSP00000147968.1:p.Ala289Val	H-2-Kb	8	8	4	SVMVFIDM	SVMAFIDM	NetMHCpan	68.2	66.8	0.979	108	0.204	235.218	280.845	1.194	145.07	116.65	66.8	68.2	496.2951144	476.1458462	416.6198901	353.7854762	M7_p20	2.285714286	2.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.191	108	0	0	NA	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	0.892466618	sgMsh2	cell line
chr10	129160683	129160683	TA	T	ENSMUST00000214271.1	5	ENSMUSG00000061367	FS	F/X	100	Olfr771	ENSMUST00000214271.1:c.300del	ENSMUSP00000151108.1:p.Phe100LeufsTer7	H-2-Kb	8	8	4	QVFLLMFL	NA	SMM	123.521	NA	NA	163	0.276	158.776	NA	NA	NA	139.83	NA	308.1	NA	123.5207728	NA	177.7215122	M7_p20	3.3	3.3	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.266	163	0	0	NA	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr10	127898691	127898691	A	T	ENSMUST00000047134.7	1	ENSMUSG00000040127	missense	N/I	16	Sdr9c7	ENSMUST00000047134.7:c.47A>T	ENSMUSP00000036628.7:p.Asn16Ile	H-2-Kb	8	4	8	FMYRWFKI	FMYRWFKN	NetMHCpan	85.2	1380.3	16.201	99	0.242	205.56	985.754	4.795	1666.42	174.67	1380.3	85.2	591.2075887	331.6958211	559.4225905	236.4503711	M7_p20	-0.2	-0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	99	0	0	NA	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr10	93516261	93516261	C	T	ENSMUST00000129421.7	1	ENSMUSG00000020017	missense	A/V	638	Hal	ENSMUST00000129421.7:c.1913C>T	ENSMUSP00000123336.1:p.Ala638Val	H-2-Kb	8	10	2	TVFSLESL	TAFSLESL	NetMHCpan	70.3	122.4	1.741	216	0.264	221.948	218.218	0.983	206.43	231.21	122.4	70.3	236.4503711	240.2923806	230.0064421	212.686537	M7_p20	1.357142857	1.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.262	216	0	0	NA	10qC2	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr10	128225954	128225954	T	C	ENSMUST00000026455.7	1	ENSMUSG00000025389	missense	F/L	25	Mip	ENSMUST00000026455.7:c.73T>C	ENSMUSP00000026455.7:p.Phe25Leu	H-2-Kb	8	4	8	FATLFYVL	FATLFYVF	SMM	186.956	3039.065	16.255	87	0.241	256.251	3026.083	11.809	3020.09	366.72	2498.3	271.1	3039.065077	186.956255	3032.075422	241.4015198	M7_p20	2.057142857	2.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.271	87	0	0	NA	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr10	127898691	127898691	A	T	ENSMUST00000047134.7	1	ENSMUSG00000040127	missense	N/I	16	Sdr9c7	ENSMUST00000047134.7:c.47A>T	ENSMUSP00000036628.7:p.Asn16Ile	H-2-Kb	8	7	5	RWFKICNL	RWFKNCNL	NetMHCpan	258.1	700.6	2.714	99	0.242	400.196	532.619	1.331	607.37	372.1	700.6	258.1	457.867692	533.0156983	412.800296	428.2920371	M7_p20	0.757142857	0.757142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	99	0	0	NA	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr10	119212091	119212091	A	C	ENSMUST00000020315.12	1	ENSMUSG00000020114	missense	L/R	498	Cand1	ENSMUST00000020315.12:c.1493T>G	ENSMUSP00000020315.6:p.Leu498Arg	H-2-Kb	8	11	1	RSCLYVIL	LSCLYVIL	SMMPMBEC	124.377	127.567	1.026	128	0.172	213.576	218.745	1.024	448.19	430.63	288.3	302.2	149.1900983	124.9510759	127.5674869	124.3769779	M7_p20	2.385714286	2.385714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.161	128	0	0	NA	10qD2	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	0.752288615	sgMsh2	cell line
chr10	103404331	103404331	A	G	ENSMUST00000074204.11	1	ENSMUSG00000019894	missense	Q/R	305	Slc6a15	ENSMUST00000074204.11:c.914A>G	ENSMUSP00000073829.4:p.Gln305Arg	H-2-Kb	8	11	1	RVFFALGL	QVFFALGL	NetMHCpan	56.1	116.2	2.071	172	0.169	278.836	511.295	1.834	593.31	569.36	116.2	56.1	429.2793522	264.0827294	613.3946729	293.5891489	M7_p20	2.685714286	2.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.201	172	0	0	NA	10qD1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	0.939192619	sgMsh2	cell line
chr11	4075508	4075508	A	G	ENSMUST00000068322.6	1	ENSMUSG00000054986	missense	N/S	344	Sec14l3	ENSMUST00000068322.6:c.1031A>G	ENSMUSP00000065084.6:p.Asn344Ser	H-2-Kb	9	6	6	TSQRYSAHM	TSQRYNAHM	NetMHC	21.52	63.74	2.962	89	0.258	233.701	349.588	1.496	63.74	21.52	197.7	105.9	666.9756823	361.5014137	501.4758232	382.1641989	M7_p20	-1.371428571	-1.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.268	89	0	0	NA	11qA1	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr10	78752673	78752673	T	A	ENSMUST00000105383.3	1	ENSMUSG00000078442	missense	K/M	101	Ccdc105	ENSMUST00000105383.3:c.302A>T	ENSMUSP00000101022.2:p.Lys101Met	H-2-Kb	9	11	1	MPPAWYARL	KPPAWYARL	NetMHC	50.07	103.1	2.059	14	0.286	416.089	633.533	1.523	103.1	50.07	200.2	117.5	1066.866308	714.6773197	1154.11743	771.3473645	M7_p20	-0.128571429	0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.333	14	0	0	NA	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr10	79997840	79997840	AC	A	ENSMUST00000171637.7	1	ENSMUSG00000035722	FS	H/X	46	Abca7	ENSMUST00000171637.7:c.143del	ENSMUSP00000128121.1:p.Pro48LeufsTer30	H-2-Kb	9	5	9	VAVRHSHPL	VAVRHSHPP	NetMHC	53.67	10302.53	191.961	30	0.267	106.08	5759.708	54.296	10302.53	53.67	11737.6	80.3	608.2890519	131.8590675	1216.886295	165.2913018	M7_p20	-0.757142857	-0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.311	30	0	0	NA	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr10	77065287	77065287	AG	A	ENSMUST00000105409.7	1	ENSMUSG00000001435	FS	P/X	1031	Col18a1	ENSMUST00000105409.7:c.3092del	ENSMUSP00000101049.1:p.Pro1031LeufsTer67	H-2-Kb	9	52	0	VTKERWAHL	NA	NetMHC	74.2	NA	NA	17	0.235	89.638	NA	NA	NA	74.2	NA	103.2	NA	114.8444468	NA	76.07640819	M7_p20	-1.485714286	-1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.267	17	0	0	NA	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr10	80730907	80730907	A	C	ENSMUST00000020420.8	1	ENSMUSG00000020198	missense	I/M	80	Ap3d1	ENSMUST00000020420.8:c.240T>G	ENSMUSP00000020420.7:p.Ile80Met	H-2-Kb	9	3	9	ISWAAFNIM	ISWAAFNII	NetMHCpan	77.2	105.8	1.37	290	0.217	160.434	309.664	1.93	240.79	120.37	105.8	77.2	378.5384504	200.4979793	405.7420321	237.82089	M7_p20	1.2	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	290	0	0	NA	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr10	129462699	129462699	A	G	ENSMUST00000213329.1	5	ENSMUSG00000096497	missense	T/A	8	Olfr787	ENSMUST00000213329.1:c.22A>G	ENSMUSP00000149391.1:p.Thr8Ala	H-2-Kb	9	5	4	SVIAEFVLL	SVITEFVLL	NetMHCpan	102.3	87.8	0.858	273	0.311	229.822	200.378	0.872	153.52	182.88	87.8	102.3	247.2350273	276.7642557	269.9292823	321.5511003	M7_p20	2.485714286	2.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.321	273	0	0	NA	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr10	125230903	125230903	G	A	ENSMUST00000211781.1	1	ENSMUSG00000020102	missense	A/V	289	Slc16a7	ENSMUST00000211781.1:c.866C>T	ENSMUSP00000147968.1:p.Ala289Val	H-2-Kb	9	8	4	SVMVFIDMF	SVMAFIDMF	NetMHC	199.66	270.37	1.354	108	0.204	426.629	529.669	1.242	270.37	199.66	474.4	700.4	584.9382211	369.9218633	662.5978159	483.3369531	M7_p20	2.085714286	2.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.191	108	0	0	NA	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	0.892466618	sgMsh2	cell line
chr10	102388635	102388635	A	T	ENSMUST00000179929.7	5	ENSMUSG00000019888	missense	I/F	237	Mgat4c	ENSMUST00000179929.7:c.709A>T	ENSMUSP00000135959.1:p.Ile237Phe	H-2-Kb	9	3	9	CSRNFLTAF	CSRNFLTAI	NetMHC	200.59	153.03	0.763	325	0.237	335.59	325.985	0.971	153.03	200.59	200	364.2	451.9704069	306.9799422	647.5152482	484.4511598	M7_p20	0.357142857	0.357142857	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.244	325	0	0	NA	10qD1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr10	125230903	125230903	G	A	ENSMUST00000211781.1	1	ENSMUSG00000020102	missense	A/V	289	Slc16a7	ENSMUST00000211781.1:c.866C>T	ENSMUSP00000147968.1:p.Ala289Val	H-2-Kb	9	3	9	SAFLLSVMV	SAFLLSVMA	NetMHC	201.59	1296.3	6.43	108	0.204	307.99	1245.488	4.044	1296.3	201.59	2455.1	423.3	1076.7379	269.8422814	1194.675617	346.1385739	M7_p20	2.842857143	2.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.191	108	0	0	NA	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	0.892466618	sgMsh2	cell line
chr10	129160683	129160683	TA	T	ENSMUST00000214271.1	5	ENSMUSG00000061367	FS	F/X	100	Olfr771	ENSMUST00000214271.1:c.300del	ENSMUSP00000151108.1:p.Phe100LeufsTer7	H-2-Kb	9	6	6	VIQVFLLMF	VIQVFFTDV	SMM	194.138	216.327	1.114	163	0.276	285.635	144.013	0.504	38.81	289.27	71.7	2223	216.3266376	194.1377536	237.2739171	282.000579	M7_p20	2.257142857	2.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.266	163	0	0	NA	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr10	83191774	83191774	T	C	ENSMUST00000040110.7	1	ENSMUSG00000034612	missense	V/A	345	Chst11	ENSMUST00000040110.7:c.1034T>C	ENSMUSP00000045349.7:p.Val345Ala	H-2-Kb	9	10	5	FNYSAPNYL	FNYSVPNYL	NetMHCpan	205.3	260.7	1.27	27	0.222	250.371	324.048	1.294	357.62	295.1	260.7	205.3	290.4758291	205.6411387	488.9337312	435.7626466	M7_p20	-0.414285714	-0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.272	27	0	0	NA	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr10	129463212	129463212	T	C	ENSMUST00000213329.1	5	ENSMUSG00000096497	missense	Y/H	179	Olfr787	ENSMUST00000213329.1:c.535T>C	ENSMUSP00000149391.1:p.Tyr179His	H-2-Kb	9	7	5	FSCDHFPIL	FSCDYFPIL	SMMPMBEC	181.656	144.627	0.796	404	0.213	286.881	186.193	0.649	172.35	324.24	204.4	459.8	200.0368468	249.5226649	144.6272072	181.6561058	M7_p20	0.757142857	0.757142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.21	404	0	0	NA	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	0.981246019	sgMsh2	cell line
chr10	123163632	123163632	AT	A	ENSMUST00000220377.1	1	ENSMUSG00000020124	FS	N/X	215	Usp15	ENSMUST00000220377.1:c.644del	ENSMUSP00000151244.1:p.Asn215MetfsTer44	H-2-Kb	9	36	0	RSLLHLYQI	NA	NetMHC	329.25	NA	NA	233	0.176	452.183	NA	NA	NA	329.25	NA	363.3	NA	586.2866429	NA	541.0656958	M7_p20	1.128571429	1.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.196	233	0	0	NA	10qD2	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	0.915829618	sgMsh2	cell line
chr10	83191774	83191774	T	C	ENSMUST00000040110.7	1	ENSMUSG00000034612	missense	V/A	345	Chst11	ENSMUST00000040110.7:c.1034T>C	ENSMUSP00000045349.7:p.Val345Ala	H-2-Kb	9	12	3	YSAPNYLKL	YSVPNYLKL	NetMHCpan	252.8	193.2	0.764	27	0.222	456.573	312.981	0.686	186.11	355.64	193.2	252.8	529.7976163	588.9928191	432.7628777	557.5065832	M7_p20	-0.128571429	-0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.272	27	0	0	NA	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr10	128225954	128225954	T	C	ENSMUST00000026455.7	1	ENSMUSG00000025389	missense	F/L	25	Mip	ENSMUST00000026455.7:c.73T>C	ENSMUSP00000026455.7:p.Phe25Leu	H-2-Kb	9	10	2	VLFGLGASL	VFFGLGASL	NetMHCpan	191.6	151	0.788	87	0.241	419.773	188.797	0.45	142.36	356.21	151	191.6	238.8416155	621.0263106	226.5948317	483.3369531	M7_p20	1.514285714	2.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.271	87	0	0	NA	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr10	77981777	77981777	C	T	ENSMUST00000105397.9	1	ENSMUSG00000020284	missense	R/C	113	Cfap410	ENSMUST00000105397.9:c.337C>T	ENSMUSP00000101036.3:p.Arg113Cys	H-2-Kb	9	8	4	TVLCNLPHL	TVLRNLPHL	NetMHCpan	339.7	205.6	0.605	34	0.147	408.72	359.513	0.88	223.45	362.19	205.6	339.7	495.5756965	457.2039776	506.1159219	455.2500477	M7_p20	0.8	1.214285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	34	0	0	NA	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr10	128225954	128225954	T	C	ENSMUST00000026455.7	1	ENSMUSG00000025389	missense	F/L	25	Mip	ENSMUST00000026455.7:c.73T>C	ENSMUSP00000026455.7:p.Phe25Leu	H-2-Kb	9	4	8	FATLFYVLF	FATLFYVFF	SMM	115.109	210.916	1.832	87	0.241	258.835	462.582	1.787	677.85	368.99	1957.7	1319.2	210.91623	115.1091906	247.3147393	148.6791262	M7_p20	2.2	2.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.271	87	0	0	NA	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr10	127898691	127898691	A	T	ENSMUST00000047134.7	1	ENSMUSG00000040127	missense	N/I	16	Sdr9c7	ENSMUST00000047134.7:c.47A>T	ENSMUSP00000036628.7:p.Asn16Ile	H-2-Kb	9	3	9	AFMYRWFKI	AFMYRWFKN	SMMPMBEC	388.374	1097.11	2.825	99	0.242	473.19	4862.087	10.275	7448.5	421.44	15247.4	1002	2275.67375	524.9404026	1097.109561	388.3738676	M7_p20	-0.2	0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	99	0	0	NA	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr10	77981777	77981777	C	T	ENSMUST00000105397.9	1	ENSMUSG00000020284	missense	R/C	113	Cfap410	ENSMUST00000105397.9:c.337C>T	ENSMUSP00000101036.3:p.Arg113Cys	H-2-Kb	9	11	1	CNLPHLQKL	RNLPHLQKL	SMM	392.744	618.173	1.574	34	0.147	464.463	594.333	1.28	621.55	691.24	377.3	446.7	618.1729539	392.7443988	570.4925797	482.2253089	M7_p20	-0.114285714	-0.114285714	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	34	0	0	NA	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr11	86139118	86139118	T	C	ENSMUST00000044423.3	1	ENSMUSG00000034329	missense	I/V	567	Brip1	ENSMUST00000044423.3:c.1699A>G	ENSMUSP00000043108.3:p.Ile567Val	H-2-Db	9	3	9	YSWTNQIAV	YSWTNQIAI	NetMHC	9.99	5.83	0.584	145	0.303	48.849	20.171	0.413	5.83	9.99	12.7	28.9	30.24266091	71.71665086	27.6420342	68.79707912	M7_p20	0.271428571	0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.294	145	0	0	NA	11qC	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr11	57201163	57201163	A	T	ENSMUST00000036315.15	1	ENSMUSG00000020524	missense	Y/F	228	Gria1	ENSMUST00000036315.15:c.683A>T	ENSMUSP00000044494.9:p.Tyr228Phe	H-2-Db	9	11	1	FILANLGFM	YILANLGFM	NetMHC	63.12	25.28	0.401	158	0.114	125.151	99.133	0.792	25.28	63.12	83.3	121.9	124.342616	143.4233955	114.9661532	128.4014713	M7_p20	1.457142857	1.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.132	158	0	0	NA	11qB1.3	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	0.616783212	sgMsh2	cell line
chr11	73814500	73814500	A	G	ENSMUST00000144724.2	2	ENSMUSG00000061984	missense	V/A	194	Olfr392	ENSMUST00000144724.2:c.581T>C	ENSMUSP00000123649.2:p.Val194Ala	H-2-Db	9	10	2	FANELMIFI	FVNELMIFI	SMM	200.734	1284.163	6.397	196	0.23	314.94	2543.055	8.075	3658.63	406.23	7290.5	928.5	1284.162549	200.7335661	1427.479894	223.6505652	M7_p20	1.5	1.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.235	196	0	0	NA	11qB4	chr11-69590981-82929860	4	3	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr11	73589528	73589528	T	C	ENSMUST00000215689.1	5	ENSMUSG00000095095	missense	D/G	70	Olfr385	ENSMUST00000215689.1:c.209A>G	ENSMUSP00000149293.1:p.Asp70Gly	H-2-Kb	8	5	7	SNLSFSGL	SNLSFSDL	NetMHC	4.84	12.46	2.574	540	0.254	11.157	32.807	2.94	12.46	4.84	27	8.1	38.61357391	14.21477533	48.05515695	17.60921516	M7_p20	0.7	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.237	540	0	0	NA	11qB4	chr11-69590981-82929860	4	3	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr11	69827851	69827851	T	G	ENSMUST00000108634.8	1	ENSMUSG00000051790	missense	N/T	301	Nlgn2	ENSMUST00000108634.8:c.902A>C	ENSMUSP00000104274.2:p.Asn301Thr	H-2-Kb	8	8	4	WSVTYQPL	WSVNYQPL	NetMHC	17.41	19.08	1.096	82	0.244	43.788	50.688	1.158	19.08	17.41	64.1	46.2	52.08827797	46.85328006	49.28786429	41.37518989	M7_p20	0.014285714	0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.259	82	0	0	NA	11qB3	chr11-69590981-82929860	4	3	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr11	57201163	57201163	A	T	ENSMUST00000036315.15	1	ENSMUSG00000020524	missense	Y/F	228	Gria1	ENSMUST00000036315.15:c.683A>T	ENSMUSP00000044494.9:p.Tyr228Phe	H-2-Kb	8	9	3	YHFILANL	YHYILANL	NetMHC	27.26	13.26	0.486	158	0.114	48.534	37.11	0.765	13.26	27.26	50	68.8	33.78625068	45.57639811	40.43337559	51.49202839	M7_p20	1.428571429	1.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.132	158	0	0	NA	11qB1.3	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	0.616783212	sgMsh2	cell line
chr11	73589528	73589528	T	C	ENSMUST00000215689.1	5	ENSMUSG00000095095	missense	D/G	70	Olfr385	ENSMUST00000215689.1:c.209A>G	ENSMUSP00000149293.1:p.Asp70Gly	H-2-Kb	8	10	2	SGLCFSSV	SDLCFSSV	NetMHC	33.47	3095.62	92.489	540	0.254	85.367	1044.666	12.237	3095.62	33.47	1543.9	58.6	461.0414792	112.1346934	545.4312289	133.5795574	M7_p20	1.614285714	1.614285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.237	540	0	0	NA	11qB4	chr11-69590981-82929860	4	3	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr11	54917807	54917807	T	C	ENSMUST00000102731.7	5	ENSMUSG00000020400	missense	N/S	518	Tnip1	ENSMUST00000102731.7:c.1553A>G	ENSMUSP00000099792.1:p.Asn518Ser	H-2-Kb	8	7	5	VTLTSAQL	VTLTNAQL	NetMHC	33.83	131.35	3.883	60	0.333	52.786	101.959	1.932	131.35	33.83	203.2	98.8	72.56713881	50.90260401	60.77710368	54.66885777	M7_p20	0.528571429	0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.343	60	0	0	NA	11qB1.3	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr11	57201163	57201163	A	T	ENSMUST00000036315.15	1	ENSMUSG00000020524	missense	Y/F	228	Gria1	ENSMUST00000036315.15:c.683A>T	ENSMUSP00000044494.9:p.Tyr228Phe	H-2-Kb	8	7	5	IGYHFILA	IGYHYILA	NetMHCpan	28.2	28.7	1.018	158	0.114	76.461	89.21	1.167	75.68	69.22	28.7	28.2	131.1414557	106.8415057	102.7401038	83.70280268	M7_p20	1.142857143	1.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.132	158	0	0	NA	11qB1.3	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	0.616783212	sgMsh2	cell line
chr11	35234893	35234893	C	T	ENSMUST00000069837.3	1	ENSMUSG00000056427	missense	P/L	133	Slit3	ENSMUST00000069837.3:c.398C>T	ENSMUSP00000066857.3:p.Pro133Leu	H-2-Kb	8	9	3	STLKLTRL	STPKLTRL	NetMHC	72.92	219.81	3.014	250	0.212	111.877	309.582	2.767	219.81	72.92	396.1	100.8	288.2305431	122.9532464	330.9329418	128.7478543	M7_p20	0.228571429	0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.224	250	0	0	NA	11qA4	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr11	70228498	70228498	T	C	ENSMUST00000000326.11	1	ENSMUSG00000000317	missense	I/V	131	Bcl6b	ENSMUST00000000326.11:c.391A>G	ENSMUSP00000000326.5:p.Ile131Val	H-2-Kb	8	11	1	VQASYEPL	IQASYEPL	NetMHC	102.79	115.06	1.119	74	0.189	120.288	127.764	1.062	115.06	102.79	136.2	128.7	119.3273511	111.8767908	137.6385219	141.1692151	M7_p20	-0.728571429	-0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.191	74	0	0	NA	11qB3	chr11-69590981-82929860	4	3	1	0.9	4.205340083	NA	1	0.892466618	sgMsh2	cell line
chr11	61491124	61491124	G	T	ENSMUST00000079080.12	1	ENSMUSG00000001034	missense	L/I	321	Mapk7	ENSMUST00000079080.12:c.961C>A	ENSMUSP00000078087.6:p.Leu321Ile	H-2-Kb	8	11	1	ISLLGRML	LSLLGRML	SMMPMBEC	146.13	623.362	4.266	63	0.254	171.567	951.229	5.544	1370.14	166.23	1063.5	247.8	838.9575756	176.9049561	623.3615346	146.1302072	M7_p20	1.085714286	1.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.26	63	0	0	NA	11qB2	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr11	72058021	72058021	G	A	ENSMUST00000075258.12	1	ENSMUSG00000040543	missense	R/W	769	Pitpnm3	ENSMUST00000075258.12:c.2305C>T	ENSMUSP00000074737.6:p.Arg769Trp	H-2-Kb	8	9	3	VVWHWQDL	VVRHWQDL	NetMHCpan	164	1200.7	7.321	133	0.286	222.002	907.754	4.089	1202.31	270.69	1200.7	164	614.8086937	260.4593785	592.570463	183.5439188	M7_p20	-0.571428571	-0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.301	133	0	0	NA	11qB4	chr11-69590981-82929860	4	3	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr11	54493324	54493324	A	G	ENSMUST00000046835.13	1	ENSMUSG00000035992	missense	N/S	349	Fnip1	ENSMUST00000046835.13:c.1046A>G	ENSMUSP00000049026.7:p.Asn349Ser	H-2-Kb	8	11	1	SEFFFSHF	NEFFFSHF	SMMPMBEC	217.14	1232.367	5.675	120	0.3	285.252	1836.74	6.439	3606.75	338.27	1908.5	292.7	1764.980859	277.8049629	1232.366829	217.1400833	M7_p20	0.528571429	0.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.297	120	0	0	NA	11qB1.3	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr11	65855384	65855384	T	C	ENSMUST00000080665.9	5	ENSMUSG00000056752	missense	T/A	3968	Dnah9	ENSMUST00000080665.9:c.11902A>G	ENSMUSP00000079494.3:p.Thr3968Ala	H-2-Kb	8	5	7	VAKWLSAL	VAKWLSTL	NetMHCpan	256.9	254.4	0.99	27	0.148	396.113	672.266	1.697	664.17	383.21	254.4	256.9	680.361923	409.0157201	758.1235717	481.6593553	M7_p20	0.8	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.157	27	0	0	NA	11qB3	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	0.733598215	sgMsh2	cell line
chr11	80330582	80330582	T	C	ENSMUST00000017836.7	1	ENSMUSG00000017692	missense	V/A	182	Rhbdl3	ENSMUST00000017836.7:c.545T>C	ENSMUSP00000017836.7:p.Val182Ala	H-2-Kb	8	6	6	FLYNGALL	FLYNGVLL	SMMPMBEC	315.312	909.369	2.884	92	0.359	431.283	1158.447	2.686	2001.54	549.03	1145.4	457.3	1171.493815	405.2658414	909.3686959	315.3116375	M7_p20	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.356	92	0	0	NA	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr11	61671685	61671685	T	A	ENSMUST00000004959.2	1	ENSMUSG00000004837	missense	C/S	161	Grap	ENSMUST00000004959.2:c.481T>A	ENSMUSP00000004959.2:p.Cys161Ser	H-2-Kb	8	10	2	ASFAQAQF	ACFAQAQF	NetMHCpan	311.8	2356.7	7.558	35	0.4	388.581	3968.216	10.212	6741.31	657.24	2356.7	311.8	4761.458462	401.5503419	3174.972734	375.6124682	M7_p20	0.2	0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.4	35	0	0	NA	11qB2	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr11	51586645	51586645	A	G	ENSMUST00000167797.7	1	ENSMUSG00000020359	missense	N/S	88	Phykpl	ENSMUST00000167797.7:c.263A>G	ENSMUSP00000132190.1:p.Asn88Ser	H-2-Kb	9	11	1	SIVDYAQRL	NIVDYAQRL	NetMHC	65.03	1198.66	18.432	89	0.191	224.193	1403.004	6.258	1198.66	65.03	777.7	75.9	1607.348318	372.4860392	1683.642965	420.0006862	M7_p20	-0.428571429	0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.211	89	0	0	NA	11qB1.3	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	0.98591862	sgMsh2	cell line
chr11	73589528	73589528	T	C	ENSMUST00000215689.1	5	ENSMUSG00000095095	missense	D/G	70	Olfr385	ENSMUST00000215689.1:c.209A>G	ENSMUSP00000149293.1:p.Asp70Gly	H-2-Kb	9	4	8	LSNLSFSGL	LSNLSFSDL	NetMHC	77.38	306.14	3.956	540	0.254	272.367	618.078	2.269	306.14	77.38	837.5	215.8	666.9756823	328.9349344	569.1804832	370.8941642	M7_p20	0.7	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.237	540	0	0	NA	11qB4	chr11-69590981-82929860	4	3	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr11	51048724	51048724	T	G	ENSMUST00000073543.1	NA	ENSMUSG00000057890	missense	L/V	206	Olfr1375	ENSMUST00000073543.1:c.616T>G	ENSMUSP00000144756.1:p.Leu206Val	H-2-Kb	9	10	2	TVFLFVAPC	TLFLFVAPC	NetMHC	95.5	658.85	6.899	253	0.237	222.429	737.169	3.314	658.85	95.5	783.7	210.3	1175.195176	333.5108752	690.6372522	234.557865	M7_p20	2.328571429	2.7	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	253	0	0	NA	11qB1.3	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr11	69827851	69827851	T	G	ENSMUST00000108634.8	1	ENSMUSG00000051790	missense	N/T	301	Nlgn2	ENSMUST00000108634.8:c.902A>C	ENSMUSP00000104274.2:p.Asn301Thr	H-2-Kb	9	7	5	SWSVTYQPL	SWSVNYQPL	NetMHC	104.12	98.21	0.943	82	0.244	218.024	183.135	0.84	98.21	104.12	661.2	458.8	134.9304597	138.7107117	231.3396105	297.3377153	M7_p20	0.014285714	0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.259	82	0	0	NA	11qB3	chr11-69590981-82929860	4	3	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr11	61546578	61546578	A	C	ENSMUST00000179936.7	1	ENSMUSG00000001036	missense	I/S	56	Epn2	ENSMUST00000179936.7:c.167T>G	ENSMUSP00000136950.1:p.Ile56Ser	H-2-Kb	9	6	6	VAFSESMSM	VAFSEIMSM	NetMHCpan	123.9	82.3	0.664	109	0.22	145.532	154.465	1.061	140.62	155.51	82.3	123.9	168.310031	135.5532704	254.8296748	263.7849417	M7_p20	0.1	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.223	109	0	0	NA	11qB2	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr11	34688511	34688511	A	C	ENSMUST00000093193.11	1	ENSMUSG00000020143	missense	F/V	692	Dock2	ENSMUST00000093193.11:c.2074T>G	ENSMUSP00000090884.5:p.Phe692Val	H-2-Kb	9	3	9	IADRKFQHV	IADRKFQHF	NetMHC	212.65	440.04	2.069	229	0.262	462.533	404.981	0.876	440.04	212.65	1163	965.2	369.9218633	493.298733	333.6184037	431.7675507	M7_p20	-1.657142857	-0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.268	229	0	0	NA	11qA4	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr11	54493324	54493324	A	G	ENSMUST00000046835.13	1	ENSMUSG00000035992	missense	N/S	349	Fnip1	ENSMUST00000046835.13:c.1046A>G	ENSMUSP00000049026.7:p.Asn349Ser	H-2-Kb	9	10	2	FSEFFFSHF	FNEFFFSHF	SMMPMBEC	166.437	185.033	1.112	120	0.3	216.734	259.001	1.195	307.57	235.72	668.8	321.4	210.4311361	197.7470439	185.033345	166.4370463	M7_p20	0.528571429	0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.297	120	0	0	NA	11qB1.3	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr11	80330582	80330582	T	C	ENSMUST00000017836.7	1	ENSMUSG00000017692	missense	V/A	182	Rhbdl3	ENSMUST00000017836.7:c.545T>C	ENSMUSP00000017836.7:p.Val182Ala	H-2-Kb	9	4	8	ALFLYNGAL	ALFLYNGVL	NetMHCpan	136.3	280.8	2.06	92	0.359	313.442	623.902	1.99	841.75	242.07	280.8	136.3	771.0987516	547.154531	476.7053215	384.8132346	M7_p20	1	1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.356	92	0	0	NA	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr11	78171162	78171162	A	G	ENSMUST00000017549.12	1	ENSMUSG00000017405	missense	I/T	252	Nek8	ENSMUST00000017549.12:c.755T>C	ENSMUSP00000017549.6:p.Ile252Thr	H-2-Kb	9	8	4	LSHTMAQPL	LSHIMAQPL	NetMHC	279.75	235.37	0.841	33	0.364	481.659	393.402	0.817	235.37	279.75	331.7	432.3	455.1033161	531.018926	483.3369531	565.2622723	M7_p20	-0.214285714	-0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.333	33	0	0	NA	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr11	74289339	74289339	C	T	ENSMUST00000214048.2	2	ENSMUSG00000070374	missense	A/V	231	Olfr59	ENSMUST00000214048.2:c.692C>T	ENSMUSP00000148959.2:p.Ala231Val	H-2-Kb	9	3	9	SAILRVPSV	SAILRVPSA	NetMHC	347.78	2741.73	7.884	202	0.054	403.631	1961.445	4.859	2741.73	347.78	2172.6	374.5	1750.289954	438.6417848	1493.653979	432.7628777	M7_p20	1.4	1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.055	202	0	0	NA	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.205340083	NA	1	0.256993005	sgMsh2	cell line
chr11	30149994	30149994	T	A	ENSMUST00000006629.13	5	ENSMUSG00000020315	missense	I/F	195	Sptbn1	ENSMUST00000006629.13:c.583A>T	ENSMUSP00000006629.7:p.Ile195Phe	H-2-Kb	9	9	3	VNFHNFTTS	VNIHNFTTS	SMM	120.812	337.373	2.793	268	0.257	276.273	966.303	3.498	1450.38	372.97	2294.1	416.4	337.3727491	120.8119794	482.2253089	179.5767056	M7_p20	-0.471428571	-0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.247	268	0	0	NA	11qA3.3	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr11	65855384	65855384	T	C	ENSMUST00000080665.9	5	ENSMUSG00000056752	missense	T/A	3968	Dnah9	ENSMUST00000080665.9:c.11902A>G	ENSMUSP00000079494.3:p.Thr3968Ala	H-2-Kb	9	4	8	LVAKWLSAL	LVAKWLSTL	NetMHCpan	330.3	316.2	0.957	27	0.148	385.746	454.022	1.177	486.24	374.2	316.2	330.3	421.8033261	397.2921646	509.6241499	473.4237051	M7_p20	0.8	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.157	27	0	0	NA	11qB3	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	0.733598215	sgMsh2	cell line
chr11	80330582	80330582	T	C	ENSMUST00000017836.7	1	ENSMUSG00000017692	missense	V/A	182	Rhbdl3	ENSMUST00000017836.7:c.545T>C	ENSMUSP00000017836.7:p.Val182Ala	H-2-Kb	9	3	9	VALFLYNGA	VALFLYNGV	SMM	359.84	90.18	0.251	92	0.359	384.378	85.49	0.222	42.89	402.95	80.8	710.1	90.17995204	359.8404656	105.9863656	365.8053055	M7_p20	1	1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.356	92	0	0	NA	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr11	35234893	35234893	C	T	ENSMUST00000069837.3	1	ENSMUSG00000056427	missense	P/L	133	Slit3	ENSMUST00000069837.3:c.398C>T	ENSMUSP00000066857.3:p.Pro133Leu	H-2-Kb	9	8	4	QSTLKLTRL	QSTPKLTRL	SMM	336.597	566.383	1.683	250	0.212	433.519	1078.084	2.487	1426.29	422.15	2368	1961.7	566.3827268	336.5968133	729.8775406	444.8872915	M7_p20	0.228571429	0.228571429	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.224	250	0	0	NA	11qA4	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr11	56040841	56040841	T	C	ENSMUST00000037682.2	1	ENSMUSG00000037393	missense	M/V	15	Nmur2	ENSMUST00000037682.2:c.43A>G	ENSMUSP00000044718.2:p.Met15Val	H-2-Kb	9	3	9	ASWIHDSLV	ASWIHDSLM	SMMPMBEC	322.292	195.097	0.605	102	0.324	418.591	286.934	0.685	349.94	454.26	389.1	712.1	223.9288243	382.9217191	195.0967344	322.2923521	M7_p20	0.585714286	0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.323	102	0	0	NA	11qB1.3	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr11	86139118	86139118	T	C	ENSMUST00000044423.3	1	ENSMUSG00000034329	missense	I/V	567	Brip1	ENSMUST00000044423.3:c.1699A>G	ENSMUSP00000043108.3:p.Ile567Val	H-2-Kb	9	10	2	AVFDKTGVL	AIFDKTGVL	SMMPMBEC	307.079	312.788	1.019	145	0.303	392.324	427.484	1.09	795.55	720.82	454	396.4	400.9682638	388.2486909	312.7879401	307.0789168	M7_p20	0.328571429	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.294	145	0	0	NA	11qC	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr11	57201163	57201163	A	T	ENSMUST00000036315.15	1	ENSMUSG00000020524	missense	Y/F	228	Gria1	ENSMUST00000036315.15:c.683A>T	ENSMUSP00000044494.9:p.Tyr228Phe	H-2-Kb	10	7	5	IGYHFILANL	IGYHYILANL	NetMHC	6.2	6.99	1.127	158	0.114	352.854	457.27	1.296	6.99	6.2	9.1	7.7	1378.256343	975.7307681	905.4406743	698.0073568	M7_p20	1.428571429	1.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.132	158	0	0	NA	11qB1.3	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	0.616783212	sgMsh2	cell line
chr12	64471562	64471562	C	A	ENSMUST00000059833.7	NA	ENSMUSG00000043060	missense	K/N	1043	Fscb	ENSMUST00000059833.7:c.3129G>T	ENSMUSP00000051554.6:p.Lys1043Asn	H-2-Db	9	7	5	VSGTNDDQI	VSGTKDDQI	NetMHC	119.37	17286.61	144.815	248	0.161	145.259	9508.967	65.462	17286.61	119.37	14214.3	388.9	4793.138739	147.4415881	4803.634994	143.0770575	M7_p20	-1.514285714	-1.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.161	248	0	0	NA	12qC1	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.752288615	sgMsh2	cell line
chr11	94570669	94570669	T	C	ENSMUST00000103164.3	1	ENSMUSG00000076435	missense	H/R	278	Acsf2	ENSMUST00000103164.3:c.833A>G	ENSMUSP00000099453.3:p.His278Arg	H-2-Db	9	11	1	RNIVNNSML	HNIVNNSML	NetMHCpan	355.7	541.7	1.523	135	0.244	374.205	522.96	1.398	1227	760.51	541.7	355.7	504.219921	377.2419664	474.8648239	371.1675498	M7_p20	0.942857143	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.253	135	0	0	NA	11qD	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr11	94463486	94463486	A	G	ENSMUST00000100561.9	1	ENSMUSG00000020866	missense	V/A	201	Cacna1g	ENSMUST00000100561.9:c.602T>C	ENSMUSP00000098127.3:p.Val201Ala	H-2-Kb	8	6	6	SMRILATL	SMRILVTL	NetMHC	125.84	682.84	5.426	76	0.184	204.421	684.749	3.35	682.84	125.84	351.5	171.3	686.6572344	237.5417764	846.7203545	293.5891489	M7_p20	1.514285714	1.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.208	76	0	0	NA	11qD	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	0.971900819	sgMsh2	cell line
chr11	98152821	98152821	AC	A	ENSMUST00000092735.11	1	ENSMUSG00000018160	FS	V/X	595	Med1	ENSMUST00000092735.11:c.1783del	ENSMUSP00000090411.5:p.Val595PhefsTer7	H-2-Kb	8	9	3	FMFFFSFF	FMVFFFFF	SMMPMBEC	119.053	1020.328	8.57	21	0.381	135.28	1271.189	9.397	1321.31	138.51	4097.2	147.2	1221.068422	132.0504848	1020.328459	119.0529058	M7_p20	2.157142857	2.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.393	21	0	0	NA	11qD	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr11	106376336	106376336	A	G	ENSMUST00000106816.7	1	ENSMUSG00000009210	missense	Y/C	109	Prr29	ENSMUST00000106816.7:c.326A>G	ENSMUSP00000102429.1:p.Tyr109Cys	H-2-Kb	8	5	7	LVYHHHCL	LVYHHHYL	NetMHCpan	79.1	15.7	0.198	55	0.236	148.987	42.351	0.284	35.3	220.6	15.7	79.1	52.8128981	160.9681675	49.40148455	137.0061303	M7_p20	-0.057142857	-0.057142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.273	55	0	0	NA	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr11	117812466	117812466	C	T	ENSMUST00000026649.13	1	ENSMUSG00000048277	missense	A/V	36	Syngr2	ENSMUST00000026649.13:c.107C>T	ENSMUSP00000026649.7:p.Ala36Val	H-2-Kb	8	6	6	VSMVLVLI	VSMVLALI	NetMHCpan	211	48.7	0.231	123	0.244	416.557	107.089	0.257	46.99	355.87	48.7	211	240.2923806	694.6083504	165.4778997	477.2434758	M7_p20	3.085714286	3.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.257	123	0	0	NA	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr11	117812466	117812466	C	T	ENSMUST00000026649.13	1	ENSMUSG00000048277	missense	A/V	36	Syngr2	ENSMUST00000026649.13:c.107C>T	ENSMUSP00000026649.7:p.Ala36Val	H-2-Kb	8	11	1	VLIVFSCI	ALIVFSCI	NetMHCpan	183.7	735.4	4.003	123	0.244	340.461	1235.282	3.628	2919.74	536.25	735.4	183.7	1516.142424	402.476011	954.4210297	278.4453695	M7_p20	3.071428571	3.071428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.257	123	0	0	NA	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr12	21251157	21251157	AC	A	ENSMUST00000064595.14	5	ENSMUSG00000052632	FS	T/X	656	Asap2	ENSMUST00000064595.14:c.1970del	ENSMUSP00000063217.8:p.Pro657ArgfsTer111	H-2-Kb	8	60	0	WTRSYSLV	NA	SMM	374.749	NA	NA	205	0.122	485.323	NA	NA	NA	592.43	NA	1187.8	NA	374.7485835	NA	378.2160895	M7_p20	-0.014285714	-0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.118	205	0	0	NA	12qA1.3	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.551366811	sgMsh2	cell line
chr12	54685943	54685943	TG	T	ENSMUST00000161592.7	1	ENSMUSG00000054302	FS	H/X	127	Eapp	ENSMUST00000161592.7:c.381del	ENSMUSP00000123698.1:p.His127GlnfsTer52	H-2-Kb	8	53	0	SLFQTVML	NA	SMMPMBEC	306.719	NA	NA	110	0.173	372.068	NA	NA	NA	617.01	NA	379.6	NA	364.5356443	NA	306.71852	M7_p20	1.757142857	1.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.195	110	0	0	NA	12qC1	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.911157018	sgMsh2	cell line
chr12	64967733	64967733	T	C	ENSMUST00000066296.8	1	ENSMUSG00000035614	missense	V/A	586	Togaram1	ENSMUST00000066296.8:c.1757T>C	ENSMUSP00000070382.7:p.Val586Ala	H-2-Kb	9	8	4	QGFAEYAIL	QGFVEYAIL	NetMHCpan	84.6	72.4	0.856	238	0.214	170.949	111.203	0.651	66.96	104.7	72.4	84.6	150.006473	237.1974414	224.5173978	307.7868068	M7_p20	1.414285714	1.414285714	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.217	238	0	0	NA	12qC1	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr12	21251157	21251157	AC	A	ENSMUST00000064595.14	5	ENSMUSG00000052632	FS	T/X	656	Asap2	ENSMUST00000064595.14:c.1970del	ENSMUSP00000063217.8:p.Pro657ArgfsTer111	H-2-Kb	9	36	0	LTPMFTSSM	NA	NetMHC	109.41	NA	NA	205	0.122	327.653	NA	NA	NA	109.41	NA	116.9	NA	538.4061351	NA	594.6343592	M7_p20	0.385714286	0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.118	205	0	0	NA	12qA1.3	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.551366811	sgMsh2	cell line
chr12	16822106	16822106	A	T	ENSMUST00000020908.8	1	ENSMUSG00000057469	missense	T/S	184	E2f6	ENSMUST00000020908.8:c.550A>T	ENSMUSP00000020908.7:p.Thr184Ser	H-2-Kb	9	7	5	LAYVSYQDI	LAYVTYQDI	NetMHC	112.91	79.49	0.704	318	0.173	164.028	168.168	1.025	79.49	112.91	153.9	137.4	182.4357725	206.1151905	206.6569426	190.6557905	M7_p20	-0.242857143	0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.17	318	0	0	NA	12qA1.1	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.794342016	sgMsh2	cell line
chr12	21251157	21251157	AC	A	ENSMUST00000064595.14	5	ENSMUSG00000052632	FS	T/X	656	Asap2	ENSMUST00000064595.14:c.1970del	ENSMUSP00000063217.8:p.Pro657ArgfsTer111	H-2-Kb	9	58	0	TMWTRSYSL	NA	NetMHCpan	106.3	NA	NA	205	0.122	120.513	NA	NA	NA	129.63	NA	106.3	NA	115.6405104	NA	125.3862749	M7_p20	-0.742857143	-0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.118	205	0	0	NA	12qA1.3	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.551366811	sgMsh2	cell line
chr11	107735220	107735220	C	A	ENSMUST00000021066.3	1	ENSMUSG00000020723	missense	G/C	182	Cacng4	ENSMUST00000021066.3:c.544G>T	ENSMUSP00000021066.3:p.Gly182Cys	H-2-Kb	9	8	4	YNYCWSFYF	YNYGWSFYF	SMM	107.179	107.922	1.007	91	0.33	162.143	162.195	1	205.71	197.08	144.4	152	107.9220037	107.1790739	179.9906727	172.2860048	M7_p20	0.542857143	0.542857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.318	91	0	0	NA	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr12	3984561	3984561	T	C	ENSMUST00000111178.1	1	ENSMUSG00000020658	missense	N/S	203	Efr3b	ENSMUST00000111178.1:c.608A>G	ENSMUSP00000106809.1:p.Asn203Ser	H-2-Kb	9	4	8	IVPSLLFSL	IVPSLLFNL	NetMHCpan	166.1	98.3	0.592	87	0.184	314.099	222.32	0.708	111.13	239.95	98.3	166.1	333.5108752	388.2486909	525.1096507	590.540925	M7_p20	1.571428571	2.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.17	87	0	0	NA	12qA1.1	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.794342016	sgMsh2	cell line
chr12	24044796	24044796	A	G	ENSMUST00000101538.4	1	ENSMUSG00000073158	missense	C/R	125	9030624G23Rik	ENSMUST00000101538.4:c.373T>C	ENSMUSP00000099077.3:p.Cys125Arg	H-2-Kb	9	6	6	SWVLRRCRI	SWVLRCCRI	NetMHC	298.07	249.64	0.838	273	0.176	409.78	346.62	0.846	249.64	298.07	1480.4	1958.9	304.8667072	342.8546153	388.3738676	476.7053215	M7_p20	0.214285714	0.214285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.18	273	0	0	NA	12qA1.3	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.841068017	sgMsh2	cell line
chr11	107735220	107735220	C	A	ENSMUST00000021066.3	1	ENSMUSG00000020723	missense	G/C	182	Cacng4	ENSMUST00000021066.3:c.544G>T	ENSMUSP00000021066.3:p.Gly182Cys	H-2-Kb	9	11	1	CWSFYFGAL	GWSFYFGAL	SMM	162.971	285.831	1.754	91	0.33	275.033	502.184	1.826	805.43	301.61	698.7	371.8	285.8314418	162.970876	305.6680173	248.4562923	M7_p20	1.242857143	1.242857143	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.318	91	0	0	NA	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr12	21251157	21251157	AC	A	ENSMUST00000064595.14	5	ENSMUSG00000052632	FS	T/X	656	Asap2	ENSMUST00000064595.14:c.1970del	ENSMUSP00000063217.8:p.Pro657ArgfsTer111	H-2-Kb	9	84	0	ASFSPMLCL	NA	SMM	342.066	NA	NA	205	0.122	364.635	NA	NA	NA	384.17	NA	345.1	NA	342.0660715	NA	400.1750427	M7_p20	1.771428571	1.771428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.118	205	0	0	NA	12qA1.3	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.551366811	sgMsh2	cell line
chr11	94463486	94463486	A	G	ENSMUST00000100561.9	1	ENSMUSG00000020866	missense	V/A	201	Cacna1g	ENSMUST00000100561.9:c.602T>C	ENSMUSP00000098127.3:p.Val201Ala	H-2-Kb	9	6	6	SMRILATLL	SMRILVTLL	SMM	368.222	342.066	0.929	76	0.184	455.245	372.507	0.818	338.86	407.89	502.9	502.6	342.0660715	368.2222268	402.9489236	520.2954165	M7_p20	1.785714286	1.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.208	76	0	0	NA	11qD	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	0.971900819	sgMsh2	cell line
chr11	98152821	98152821	AC	A	ENSMUST00000092735.11	1	ENSMUSG00000018160	FS	V/X	595	Med1	ENSMUST00000092735.11:c.1783del	ENSMUSP00000090411.5:p.Val595PhefsTer7	H-2-Kb	9	7	5	LEFMFFFSF	LEFMVFFFF	SMM	152.093	1559.948	10.257	21	0.381	326.93	3466.529	10.603	5373.11	500.31	11273.5	2074.9	1559.947563	152.0932709	1337.365144	153.5500634	M7_p20	2.157142857	2.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.393	21	0	0	NA	11qD	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr11	101178044	101178044	C	T	ENSMUST00000103109.3	1	ENSMUSG00000017167	missense	L/F	138	Cntnap1	ENSMUST00000103109.3:c.412C>T	ENSMUSP00000099398.3:p.Leu138Phe	H-2-Kb	9	11	1	FHYHFTARY	LHYHFTARY	SMM	178.694	173.824	0.973	109	0.22	499.487	452.818	0.907	708.28	772.38	778.1	944.7	173.8241042	178.6940122	197.3558481	226.5948317	M7_p20	-0.914285714	-0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.214	109	0	0	NA	11qD	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	0.99993642	sgMsh2	cell line
chr12	101058739	101058739	T	C	ENSMUST00000163095.8	5	ENSMUSG00000041846	missense	E/G	167	Ppp4r3a	ENSMUST00000163095.8:c.500A>G	ENSMUSP00000129654.1:p.Glu167Gly	H-2-Db	9	6	6	LALENGGYI	LALENEGYI	NetMHC	10.51	14.84	1.412	147	0.286	31.457	35.527	1.129	14.84	10.51	31.1	20.2	43.01500721	44.01695544	39.95489558	42.71397607	M7_p20	-0.114285714	0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.274	147	0	0	NA	12qE	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr12	103950807	103950807	A	G	ENSMUST00000122229.7	1	ENSMUSG00000072849	missense	V/A	201	Serpina1e	ENSMUST00000122229.7:c.602T>C	ENSMUSP00000113606.1:p.Val201Ala	H-2-Db	9	10	2	FALANYILF	FVLANYILF	NetMHC	10.9	298.56	27.391	307	0.036	33.881	270.226	7.976	298.56	10.9	616.6	30.9	241.8911616	37.8111599	235.2718676	36.86124504	M7_p20	1.7	1.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.046	307	0	0	NA	12qE	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.214939604	sgMsh2	cell line
chr12	113490367	113490367	T	C	ENSMUST00000063317.3	NA	ENSMUSG00000051804	missense	V/A	268	Adam6b	ENSMUST00000063317.3:c.803T>C	ENSMUSP00000065529.2:p.Val268Ala	H-2-Db	9	10	2	TAYTNSDPF	TVYTNSDPF	NetMHCpan	15.4	81.5	5.292	461	0.204	23.883	201.28	8.428	445.31	19.02	81.5	15.4	219.0887109	34.2468002	183.4720865	28.74550879	M7_p20	-1.228571429	-1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.209	461	0	0	NA	12qF1	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.976573419	sgMsh2	cell line
chr13	30381461	30381461	T	C	ENSMUST00000066412.7	1	ENSMUSG00000049115	missense	Y/H	170	Agtr1a	ENSMUST00000066412.7:c.508T>C	ENSMUSP00000070958.7:p.Tyr170His	H-2-Db	9	5	7	VIHRNVHFI	VIHRNVYFI	NetMHC	120.7	74.78	0.62	276	0.21	262.57	243.855	0.929	74.78	120.7	223.7	259.3	264.0097708	265.8397991	329.2835233	374.6019209	M7_p20	-0.414285714	-0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.212	276	0	0	NA	13qA3.2	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	0.99059122	sgMsh2	cell line
chr12	80967620	80967620	T	C	ENSMUST00000218162.1	1	ENSMUSG00000021135	missense	T/A	109	Slc10a1	ENSMUST00000218162.1:c.325A>G	ENSMUSP00000151555.1:p.Thr109Ala	H-2-Db	9	4	8	GNLSNLFAL	GNLSNLFTL	NetMHC	257.28	99.2	0.386	48	0.292	282.664	158.975	0.562	99.2	257.28	134.9	270.5	192.1409794	324.8029761	183.0501124	294.8288646	M7_p20	1.671428571	1.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.322	48	0	0	NA	12qD1	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr13	12212733	12212733	T	A	ENSMUST00000099856.5	1	ENSMUSG00000021311	missense	I/F	736	Mtr	ENSMUST00000099856.5:c.2206A>T	ENSMUSP00000097442.4:p.Ile736Phe	H-2-Kb	8	7	5	VGHLFPFM	VGHLIPFM	NetMHCpan	31.3	763.8	24.403	185	0.259	68.083	2828.237	41.541	3698.75	37.37	763.8	31.3	3117.022951	98.79614526	2539.451951	101.5640475	M7_p20	0.871428571	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.255	185	0	0	NA	13qA1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr13	11595649	11595649	A	G	ENSMUST00000021750.14	1	ENSMUSG00000021313	missense	V/A	4097	Ryr2	ENSMUST00000021750.14:c.12290T>C	ENSMUSP00000021750.7:p.Val4097Ala	H-2-Kb	8	7	5	IGFNAAVL	IGFNVAVL	SMM	41.375	32.489	0.785	154	0.227	43.132	33.691	0.781	30.94	41.52	51.9	57.1	32.48927349	41.37518989	34.89313575	44.74453509	M7_p20	1.5	1.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.233	154	0	0	NA	13qA1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr13	27245800	27245800	A	C	ENSMUST00000035273.3	1	ENSMUSG00000038891	missense	T/P	74	Prl3b1	ENSMUST00000035273.3:c.220A>C	ENSMUSP00000047680.2:p.Thr74Pro	H-2-Kb	8	8	4	TAWPYGLM	TAWTYGLM	NetMHCpan	43.7	33.9	0.776	148	0.189	173.631	86.002	0.495	40.56	82.57	33.9	43.7	174.0764414	292.2402293	131.4437679	264.691503	M7_p20	0.471428571	0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.197	148	0	0	NA	13qA3.1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	0.920502218	sgMsh2	cell line
chr12	116841323	116841323	T	A	ENSMUST00000070733.8	1	ENSMUSG00000056553	missense	Y/N	153	Ptprn2	ENSMUST00000070733.8:c.457T>A	ENSMUSP00000064046.7:p.Tyr153Asn	H-2-Kb	8	10	2	RNLPYLEL	RYLPYLEL	NetMHCpan	108.5	442.5	4.078	377	0.175	174.548	1081.609	6.197	1195.52	141.25	442.5	108.5	967.6983488	207.8452003	1215.458122	303.2075422	M7_p20	0.214285714	0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.176	377	0	0	NA	12qF2	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.822377616	sgMsh2	cell line
chr12	85139623	85139623	T	A	ENSMUST00000221972.1	1	ENSMUSG00000019235	missense	Y/F	237	Rps6kl1	ENSMUST00000221972.1:c.710A>T	ENSMUSP00000152336.1:p.Tyr237Phe	H-2-Kb	8	7	5	DHFQFSGL	DHFQYSGL	SMM	68.824	84.477	1.227	45	0.267	111.998	168.647	1.506	236.43	141.82	972.8	631.6	84.47729517	68.82401428	100.8648855	82.17505435	M7_p20	0.214285714	0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.291	45	0	0	NA	12qD1	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr13	11595649	11595649	A	G	ENSMUST00000021750.14	1	ENSMUSG00000021313	missense	V/A	4097	Ryr2	ENSMUST00000021750.14:c.12290T>C	ENSMUSP00000021750.7:p.Val4097Ala	H-2-Kb	8	11	1	AAVLLTNL	VAVLLTNL	NetMHCpan	153.4	37.5	0.244	154	0.227	270.468	68.835	0.255	27.06	175.56	37.5	153.4	100.1705365	377.3462166	106.5957771	365.3759857	M7_p20	1.885714286	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.233	154	0	0	NA	13qA1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr12	118298898	118298898	T	C	ENSMUST00000222314.1	1	ENSMUSG00000025323	missense	Q/R	471	Sp4	ENSMUST00000222314.1:c.1412A>G	ENSMUSP00000152603.1:p.Gln471Arg	H-2-Kb	8	5	7	ISWQTVRV	ISWQTVQV	SMMPMBEC	114.747	186.097	1.622	118	0.212	176.548	322.443	1.826	350.62	182.59	415	240.1	294.2659418	170.5061311	186.0972691	114.746646	M7_p20	-0.285714286	-0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.211	118	0	0	NA	12qF2	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.98591862	sgMsh2	cell line
chr13	9575459	9575459	A	G	ENSMUST00000174552.7	1	ENSMUSG00000048264	missense	I/M	618	Dip2c	ENSMUST00000174552.7:c.1854A>G	ENSMUSP00000133806.1:p.Ile618Met	H-2-Kb	8	5	7	SSLRMLMV	SSLRMLIV	NetMHC	227.75	1260.38	5.534	143	0.231	362.114	1029.923	2.844	1260.38	227.75	922.9	467.1	874.4601036	336.3101696	1136.946424	387.9180607	M7_p20	1.471428571	1.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.253	143	0	0	NA	13qA1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr12	88795504	88795504	G	A	ENSMUST00000163134.7	5	ENSMUSG00000066392	missense	S/N	107	Nrxn3	ENSMUST00000163134.7:c.320G>A	ENSMUSP00000129678.1:p.Ser107Asn	H-2-Kb	8	11	1	NSWHFLMV	SSWHFLMV	NetMHCpan	158.7	22.1	0.139	267	0.21	264.274	32.335	0.122	23.39	637.57	22.1	158.7	46.316955	294.2659418	41.2800296	234.2825811	M7_p20	1.114285714	1.114285714	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.221	267	0	0	NA	12qD3	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr13	23543231	23543231	T	C	ENSMUST00000224359.1	NA	ENSMUSG00000114456	missense	Y/C	41	H2bc9	ENSMUST00000224359.1:c.122A>G	ENSMUSP00000153277.1:p.Tyr41Cys	H-2-Kb	8	9	3	SVCVYKVL	SVYVYKVL	SMMPMBEC	165.478	16.624	0.1	222	0.266	338.312	12.062	0.036	6.66	683.22	7.5	468.3	17.69049561	208.324333	16.6241711	165.4778997	M7_p20	1.957142857	1.957142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.273	222	0	0	NA	13qA3.1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr13	23574069	23574069	T	C	ENSMUST00000105106.1	NA	ENSMUSG00000069268	missense	Y/C	41	H2bc7	ENSMUST00000105106.1:c.122A>G	ENSMUSP00000100738.1:p.Tyr41Cys	H-2-Kb	8	9	3	SVCVYKVL	SVYVYKVL	SMMPMBEC	165.478	16.624	0.1	213	0.23	338.312	12.062	0.036	6.66	683.22	7.5	468.3	17.69049561	208.324333	16.6241711	165.4778997	M7_p20	1.957142857	1.957142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.232	213	0	0	NA	13qA3.1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr13	17718224	17718224	T	C	ENSMUST00000042365.8	1	ENSMUSG00000041297	missense	N/S	1458	Cdk13	ENSMUST00000042365.8:c.4373A>G	ENSMUSP00000036013.7:p.Asn1458Ser	H-2-Kb	9	10	2	HSYNYGGNL	HNYNYGGNL	NetMHC	16.96	32.39	1.91	157	0.076	102.147	118.023	1.155	32.39	16.96	40.5	28.4	213.3585248	200.4979793	195.5464788	175.8935847	M7_p20	-0.942857143	-0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.078	157	0	0	NA	13qA2	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	0.364462807	sgMsh2	cell line
chr13	13759442	13759442	T	C	ENSMUST00000110559.2	1	ENSMUSG00000019726	missense	I/T	3575	Lyst	ENSMUST00000110559.2:c.10724T>C	ENSMUSP00000106188.1:p.Ile3575Thr	H-2-Kb	9	10	2	VTTAYTNRL	VITAYTNRL	NetMHC	98.57	85.53	0.868	124	0.347	195.95	171.394	0.875	85.53	98.57	120.4	128.2	222.3873092	263.6999212	253.0754397	277.4917016	M7_p20	-0.728571429	-0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.338	124	0	0	NA	13qA1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr12	70014794	70014794	T	A	ENSMUST00000222237.1	5	ENSMUSG00000021068	missense	N/Y	2099	Nin	ENSMUST00000222237.1:c.6295A>T	ENSMUSP00000152240.1:p.Asn2099Tyr	H-2-Kb	9	9	3	VRYLAPAPL	VRNLAPAPL	NetMHC	104.19	3753.05	36.021	180	0.233	192.684	3004.294	15.592	3753.05	104.19	5298.2	215.5	1667.669554	169.8673846	2255.53723	252.4933823	M7_p20	0.957142857	0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	180	0	0	NA	12qC2	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr12	116059469	116059469	A	T	ENSMUST00000183125.1	1	ENSMUSG00000042063	missense	E/V	269	Zfp386	ENSMUST00000183125.1:c.806A>T	ENSMUSP00000138305.1:p.Glu269Val	H-2-Kb	9	11	1	VTPYMYKEI	ETPYMYKEI	NetMHC	148.16	6532.43	44.09	182	0.214	252.595	4784.034	18.94	6532.43	148.16	6871.4	218.7	2979.270937	286.4903513	3035.638135	345.3424772	M7_p20	-0.742857143	-0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.198	182	0	0	NA	12qF2	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.925174818	sgMsh2	cell line
chr13	11595649	11595649	A	G	ENSMUST00000021750.14	1	ENSMUSG00000021313	missense	V/A	4097	Ryr2	ENSMUST00000021750.14:c.12290T>C	ENSMUSP00000021750.7:p.Val4097Ala	H-2-Kb	9	7	5	IGFNAAVLL	IGFNVAVLL	NetMHCpan	79.4	111.6	1.406	154	0.227	378.446	470.176	1.242	259.19	154.18	111.6	79.4	851.3536455	602.7122243	681.1613539	607.0856956	M7_p20	2.1	2.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.233	154	0	0	NA	13qA1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr12	116841323	116841323	T	A	ENSMUST00000070733.8	1	ENSMUSG00000056553	missense	Y/N	153	Ptprn2	ENSMUST00000070733.8:c.457T>A	ENSMUSP00000064046.7:p.Tyr153Asn	H-2-Kb	9	10	2	RNLPYLELL	RYLPYLELL	NetMHC	181.95	954.58	5.246	377	0.175	335.862	809.025	2.409	954.58	181.95	605.4	239.1	760.5188801	432.6233939	857.5313379	491.1905468	M7_p20	1.257142857	1.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.176	377	0	0	NA	12qF2	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.822377616	sgMsh2	cell line
chr13	27245800	27245800	A	C	ENSMUST00000035273.3	1	ENSMUSG00000038891	missense	T/P	74	Prl3b1	ENSMUST00000035273.3:c.220A>C	ENSMUSP00000047680.2:p.Thr74Pro	H-2-Kb	9	8	4	TAWPYGLML	TAWTYGLML	NetMHCpan	89.7	86.7	0.967	148	0.189	280.853	209.973	0.748	153.72	208.32	86.7	89.7	400.9682638	466.7775928	266.2257137	353.3865369	M7_p20	0.757142857	0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.197	148	0	0	NA	13qA3.1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	0.920502218	sgMsh2	cell line
chr12	72470286	72470286	T	C	ENSMUST00000162159.7	1	ENSMUSG00000021090	missense	V/A	603	Lrrc9	ENSMUST00000162159.7:c.1808T>C	ENSMUSP00000124394.1:p.Val603Ala	H-2-Kb	9	4	8	FVFDHDLAL	FVFDHDLVL	SMM	222.9	314.13	1.409	259	0.181	235.276	444.635	1.89	575.14	247.58	741.4	377.4	314.1304236	222.8999649	276.216743	222.9718309	M7_p20	0.285714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.182	259	0	0	NA	12qC3	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.850413217	sgMsh2	cell line
chr13	19630076	19630076	C	T	ENSMUST00000002883.6	1	ENSMUSG00000021319	missense	L/F	268	Sfrp4	ENSMUST00000002883.6:c.802C>T	ENSMUSP00000002883.5:p.Leu268Phe	H-2-Kb	9	7	5	RMMLFENCL	RMMLLENCL	SMM	164.479	604.102	3.673	118	0.195	257.546	1549.88	6.018	2651.64	298.14	2354.6	286.4	604.1016195	164.478827	745.1607995	228.6914879	M7_p20	1.114285714	1.114285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.195	118	0	0	NA	13qA2	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	0.911157018	sgMsh2	cell line
chr12	103950807	103950807	A	G	ENSMUST00000122229.7	1	ENSMUSG00000072849	missense	V/A	201	Serpina1e	ENSMUST00000122229.7:c.602T>C	ENSMUSP00000113606.1:p.Val201Ala	H-2-Kb	9	10	2	FALANYILF	FVLANYILF	SMM	340.494	382.922	1.125	307	0.036	400.253	477.294	1.192	491.94	400.33	1285	555.1	382.9217191	340.4944207	462.6472659	400.1750427	M7_p20	1.7	1.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.046	307	0	0	NA	12qE	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.214939604	sgMsh2	cell line
chr13	23814941	23814941	T	G	ENSMUST00000006786.10	1	ENSMUSG00000036110	missense	L/V	106	Slc17a2	ENSMUST00000006786.10:c.316T>G	ENSMUSP00000006786.4:p.Leu106Val	H-2-Kb	9	3	9	ISYGIILTV	ISYGIILTL	NetMHCpan	176.6	46.9	0.266	99	0.202	340.056	148.11	0.436	150.59	468.91	46.9	176.6	157.438158	354.0870144	145.6297151	326.0243217	M7_p20	2.085714286	2.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.212	99	0	0	NA	13qA3.1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	0.99059122	sgMsh2	cell line
chr12	113490367	113490367	T	C	ENSMUST00000063317.3	NA	ENSMUSG00000051804	missense	V/A	268	Adam6b	ENSMUST00000063317.3:c.803T>C	ENSMUSP00000065529.2:p.Val268Ala	H-2-Kb	9	10	2	TAYTNSDPF	TVYTNSDPF	SMM	336.597	378.538	1.125	461	0.204	436.156	441.835	1.013	455.86	502.27	668.7	603.2	378.5384504	336.5968133	427.809082	370.0411313	M7_p20	-1.228571429	-1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.209	461	0	0	NA	12qF1	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.976573419	sgMsh2	cell line
chr13	105444804	105444804	C	A	ENSMUST00000022235.5	NA	ENSMUSG00000021721	missense	P/H	184	Htr1a	ENSMUST00000022235.5:c.551C>A	ENSMUSP00000022235.4:p.Pro184His	H-2-Db	9	8	4	RSNHNECTI	RSNPNECTI	SMMPMBEC	82.522	130.488	1.581	75	0.24	93.833	193.026	2.057	245.57	86.13	327.8	392	140.4817795	101.5359882	130.4878273	82.52204846	M7_p20	-1.057142857	-1.057142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.279	75	0	0	NA	13qD1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr13	73950197	73950197	T	C	ENSMUST00000099384.3	1	ENSMUSG00000057649	missense	C/R	421	Brd9	ENSMUST00000099384.3:c.1261T>C	ENSMUSP00000096982.2:p.Cys421Arg	H-2-Db	9	11	1	RALSLQEFV	CALSLQEFV	NetMHC	183.3	545.9	2.978	99	0.263	259.843	490.992	1.89	545.9	183.3	935.3	607.3	407.9622703	265.8397991	436.0838467	253.8458104	M7_p20	0.971428571	0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.262	99	0	0	NA	13qC1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr14	16423715	16423715	CA	C	ENSMUST00000017629.11	1	ENSMUSG00000017485	FS	K/X	1426	Top2b	ENSMUST00000017629.11:c.4282del	ENSMUSP00000017629.4:p.Ser1428ValfsTer41	H-2-Kb	8	18	0	IFFHFLHI	NA	SMMPMBEC	20.311	NA	NA	49	0.347	23.503	NA	NA	NA	60.11	NA	23.9	NA	23.10681036	NA	20.3114066	M7_p20	1.471428571	1.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.34	49	0	0	NA	14qA2	chr14-7548571-19566630	3	2	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr14	33359165	33359165	T	C	ENSMUST00000111956.8	1	ENSMUSG00000063506	missense	F/L	173	Arhgap22	ENSMUST00000111956.8:c.517T>C	ENSMUSP00000107587.2:p.Phe173Leu	H-2-Kb	8	11	1	LGPRLAPL	FGPRLAPL	NetMHC	66.34	68.71	1.036	38	0.289	156.493	143.133	0.915	68.71	66.34	133.6	124.3	152.6651821	212.1973715	160.597951	188.68614	M7_p20	0.185714286	0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.28	38	0	0	NA	14qB	chr14-19751082-41183403	3	2	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr13	84294848	84294848	C	T	ENSMUST00000057495.9	1	ENSMUSG00000035762	missense	L/F	478	Tmem161b	ENSMUST00000057495.9:c.1432C>T	ENSMUSP00000055208.7:p.Leu478Phe	H-2-Kb	8	11	2	GFFYHQYL	GLFYHQYL	NetMHCpan	110.4	348	3.152	84	0.262	251.634	651.008	2.587	1503.26	289.27	348	110.4	747.7217263	254.5305993	554.2937734	248.7367755	M7_p20	0.014285714	0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.3	84	0	0	NA	13qC3	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr14	21660934	21660934	A	G	ENSMUST00000182405.8	1	ENSMUSG00000021767	missense	T/A	650	Kat6b	ENSMUST00000182405.8:c.1948A>G	ENSMUSP00000138377.1:p.Thr650Ala	H-2-Kb	8	10	2	TALQHLHM	TTLQHLHM	NetMHC	413.65	463.09	1.12	50	0.32	490.709	386.044	0.787	463.09	413.65	393	428.4	357.8821189	553.0189331	379.0879676	599.4321055	M7_p20	0.2	0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.312	50	0	0	NA	14qA3	chr14-19751082-41183403	3	2	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr13	112895502	112895502	T	C	ENSMUST00000022281.4	1	ENSMUSG00000016018	missense	H/R	592	Mtrex	ENSMUST00000022281.4:c.1775A>G	ENSMUSP00000022281.3:p.His592Arg	H-2-Kb	8	5	7	SFYQFQRY	SFYQFQHY	SMMPMBEC	116.075	146.805	1.265	121	0.207	281.85	316.134	1.122	460.58	431.04	1059	1188.1	171.6880231	132.6600022	146.8047136	116.0753495	M7_p20	-1.214285714	-1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.253	121	0	0	NA	13qD2.2	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr13	64793242	64793242	T	C	ENSMUST00000091554.5	5	ENSMUSG00000033063	missense	D/G	308	Cntnap3	ENSMUST00000091554.5:c.923A>G	ENSMUSP00000089140.4:p.Asp308Gly	H-2-Kb	8	7	5	TSYLGLNF	TSYLDLNF	NetMHCpan	202.2	703.1	3.477	270	0.189	476.558	690.72	1.449	688.43	465.88	703.1	202.2	693.0107956	727.3442335	528.128981	487.2367077	M7_p20	0.628571429	0.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.192	270	0	0	NA	13qB3	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	0.897139218	sgMsh2	cell line
chr14	14771285	14771285	A	G	ENSMUST00000057015.7	1	ENSMUSG00000021733	missense	S/G	672	Slc4a7	ENSMUST00000057015.7:c.2014A>G	ENSMUSP00000058313.6:p.Ser672Gly	H-2-Kb	8	10	2	YGVSWGNL	YSVSWGNL	NetMHCpan	215.4	96.8	0.449	192	0.297	353.079	100.846	0.286	88.72	481.4	96.8	215.4	134.8155538	401.5503419	104.8914285	304.6070846	M7_p20	0.285714286	0.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.302	192	0	0	NA	14qA1	chr14-7548571-19566630	3	2	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr14	16423715	16423715	CA	C	ENSMUST00000017629.11	1	ENSMUSG00000017485	FS	K/X	1426	Top2b	ENSMUST00000017629.11:c.4282del	ENSMUSP00000017629.4:p.Ser1428ValfsTer41	H-2-Kb	8	44	0	LLFLLHHL	NA	NetMHCpan	100	NA	NA	49	0.347	245.822	NA	NA	NA	510.6	NA	100	NA	284.2758718	NA	207.3671696	M7_p20	1.657142857	1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.34	49	0	0	NA	14qA2	chr14-7548571-19566630	3	2	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr14	23436016	23436016	TA	T	ENSMUST00000188285.6	1	ENSMUSG00000063142	FS	Y/X	680	Kcnma1	ENSMUST00000188285.6:c.2038del	ENSMUSP00000140275.1:p.Tyr680ThrfsTer31	H-2-Kb	8	8	4	AFFTARPV	NA	SMM	285.588	NA	NA	41	0.439	464.476	NA	NA	NA	585.6	NA	996.8	NA	285.5880296	NA	343.3523309	M7_p20	0.685714286	0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.46	41	0	0	NA	14qA3	chr14-19751082-41183403	3	2	1	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr13	84294848	84294848	C	T	ENSMUST00000057495.9	1	ENSMUSG00000035762	missense	L/F	478	Tmem161b	ENSMUST00000057495.9:c.1432C>T	ENSMUSP00000055208.7:p.Leu478Phe	H-2-Kb	9	10	3	FGFFYHQYL	FGLFYHQYL	NetMHCpan	8.2	34.1	4.159	84	0.262	63.013	177.21	2.812	52.25	17.07	34.1	8.2	357.3633412	127.382568	302.1690645	108.9557112	M7_p20	0.014285714	0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.3	84	0	0	NA	13qC3	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr13	104493669	104493669	A	G	ENSMUST00000224208.1	NA	ENSMUSG00000046169	missense	R/G	1107	Adamts6	ENSMUST00000224208.1:c.3319A>G	ENSMUSP00000153359.1:p.Arg1107Gly	H-2-Kb	9	5	7	CSRAYFGQM	CSRAYFRQM	NetMHC	56.05	51.56	0.92	138	0.232	123.245	150.428	1.221	51.56	56.05	80	71	220.8564057	176.6485187	264.3930288	175.4890407	M7_p20	-0.457142857	0.014285714	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.238	138	0	0	NA	13qD1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr13	49722263	49722263	G	A	ENSMUST00000165316.7	1	ENSMUSG00000037851	missense	V/I	809	Iars	ENSMUST00000165316.7:c.2425G>A	ENSMUSP00000132082.1:p.Val809Ile	H-2-Kb	9	3	9	IHYLMLPRI	IHYLMLPRV	NetMHCpan	73.9	81.8	1.107	73	0.151	93.551	87.682	0.937	62.46	83.8	81.8	73.9	93.56426278	103.3023021	109.7109561	113.3052413	M7_p20	0.942857143	1.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.183	73	0	0	NA	13qA5	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	0.855085817	sgMsh2	cell line
chr14	16423715	16423715	CA	C	ENSMUST00000017629.11	1	ENSMUSG00000017485	FS	K/X	1426	Top2b	ENSMUST00000017629.11:c.4282del	ENSMUSP00000017629.4:p.Ser1428ValfsTer41	H-2-Kb	9	18	0	IFFHFLHIL	NA	NetMHCpan	37	NA	NA	49	0.347	73.405	NA	NA	NA	112.16	NA	37	NA	65.48020042	NA	81.32985537	M7_p20	1.614285714	1.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.34	49	0	0	NA	14qA2	chr14-7548571-19566630	3	2	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr14	20409093	20409093	G	A	ENSMUST00000056073.13	1	ENSMUSG00000039543	missense	T/I	734	Cfap70	ENSMUST00000056073.13:c.2201C>T	ENSMUSP00000056869.6:p.Thr734Ile	H-2-Kb	9	11	1	INVIAWTLL	TNVIAWTLL	NetMHCpan	95	296.1	3.117	97	0.278	184.149	351.857	1.911	278.03	122.12	296.1	95	435.622196	254.1616376	407.6148523	246.1784313	M7_p20	2.357142857	2.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.285	97	0	0	NA	14qA3	chr14-19751082-41183403	3	2	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr13	112895502	112895502	T	C	ENSMUST00000022281.4	1	ENSMUSG00000016018	missense	H/R	592	Mtrex	ENSMUST00000022281.4:c.1775A>G	ENSMUSP00000022281.3:p.His592Arg	H-2-Kb	9	7	5	YQFQRYRAI	YQFQHYRAI	NetMHCpan	110.6	73.7	0.666	121	0.207	222.659	230.365	1.035	120.91	136.11	73.7	110.6	356.5414284	344.4371603	339.8208329	309.2074862	M7_p20	-0.671428571	-0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.253	121	0	0	NA	13qD2.2	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr13	66956472	66956472	A	G	ENSMUST00000021990.3	1	ENSMUSG00000021518	missense	N/S	136	Ptdss1	ENSMUST00000021990.3:c.407A>G	ENSMUSP00000021990.3:p.Asn136Ser	H-2-Kb	9	4	8	LMYWLDPSL	LMYWLDPNL	SMM	98.426	84.549	0.859	329	0.21	121.089	87.587	0.723	75.17	140.26	113.3	198.7	84.54929682	98.4260372	90.62541326	101.9177905	M7_p20	-0.071428571	0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	329	0	0	NA	13qB3	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr13	53118802	53118802	G	A	ENSMUST00000021918.8	1	ENSMUSG00000021464	missense	L/F	276	Ror2	ENSMUST00000021918.8:c.826C>T	ENSMUSP00000021918.8:p.Leu276Phe	H-2-Kb	9	8	4	SNPFILMRL	SNPLILMRL	NetMHCpan	123.2	176.6	1.433	39	0.256	355.403	342.444	0.964	133.05	164.91	176.6	123.2	508.2881677	545.8961105	685.8829388	652.0036095	M7_p20	1.528571429	1.528571429	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.285	39	0	0	NA	13qB1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr13	84294848	84294848	C	T	ENSMUST00000057495.9	1	ENSMUSG00000035762	missense	L/F	478	Tmem161b	ENSMUST00000057495.9:c.1432C>T	ENSMUSP00000055208.7:p.Leu478Phe	H-2-Kb	9	12	1	FFYHQYLTV	LFYHQYLTV	SMM	182.856	177.873	0.973	84	0.262	249.969	228.71	0.915	259.61	272.82	311.4	457.9	177.8729877	182.8563304	197.8108003	227.1171867	M7_p20	-0.285714286	0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.3	84	0	0	NA	13qC3	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr14	16423715	16423715	CA	C	ENSMUST00000017629.11	1	ENSMUSG00000017485	FS	K/X	1426	Top2b	ENSMUST00000017629.11:c.4282del	ENSMUSP00000017629.4:p.Ser1428ValfsTer41	H-2-Kb	9	37	0	TVMKKIPLL	NA	NetMHCpan	237	NA	NA	49	0.347	309.636	NA	NA	NA	303.59	NA	237	NA	328.178405	NA	315.6821313	M7_p20	0.657142857	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.34	49	0	0	NA	14qA2	chr14-7548571-19566630	3	2	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr13	61002408	61002408	T	C	ENSMUST00000071526.5	1	ENSMUSG00000055298	missense	N/S	259	Ctsj	ENSMUST00000071526.5:c.776A>G	ENSMUSP00000071457.4:p.Asn259Ser	H-2-Kb	9	5	7	DSFRFYSGG	DSFRFYNGG	SMM	289.141	331.215	1.146	220	0.218	326.198	552.765	1.695	687.46	305.46	1436.6	693.4	331.2150024	289.1412139	418.0709584	346.9365057	M7_p20	-0.257142857	-0.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.215	220	0	0	NA	13qB2	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr13	60896722	60896722	C	T	ENSMUST00000225859.1	NA	ENSMUSG00000114432	missense	C/Y	22	Gm49391	ENSMUST00000225859.1:c.65G>A	ENSMUSP00000153232.1:p.Cys22Tyr	H-2-Kb	9	4	8	AVFLLILYL	AVFLLILCL	SMM	237.197	429.645	1.811	277	0.227	295.089	881.363	2.987	1333.08	330.61	2138.5	779.8	429.6452354	237.1974414	384.8132346	259.5673122	M7_p20	3.028571429	3.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.23	277	0	0	NA	13qB2	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr13	112895502	112895502	T	C	ENSMUST00000022281.4	1	ENSMUSG00000016018	missense	H/R	592	Mtrex	ENSMUST00000022281.4:c.1775A>G	ENSMUSP00000022281.3:p.His592Arg	H-2-Kb	9	4	8	KSFYQFQRY	KSFYQFQHY	SMM	199.118	214.837	1.079	121	0.207	358.496	409.089	1.141	506.11	438.86	1456.1	1472	214.8374555	199.1177609	312.0685478	278.131386	M7_p20	-1.214285714	-1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.253	121	0	0	NA	13qD2.2	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr14	16423715	16423715	CA	C	ENSMUST00000017629.11	1	ENSMUSG00000017485	FS	K/X	1426	Top2b	ENSMUST00000017629.11:c.4282del	ENSMUSP00000017629.4:p.Ser1428ValfsTer41	H-2-Kb	9	17	0	EIFFHFLHI	NA	NetMHCpan	110.4	NA	NA	49	0.347	230.886	NA	NA	NA	520.73	NA	110.4	NA	258.8868552	NA	202.8850284	M7_p20	1.471428571	1.471428571	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.34	49	0	0	NA	14qA2	chr14-7548571-19566630	3	2	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr14	36940490	36940490	C	T	ENSMUST00000067700.12	5	ENSMUSG00000058690	missense	A/T	246	Ccser2	ENSMUST00000067700.12:c.736G>A	ENSMUSP00000068550.6:p.Ala246Thr	H-2-Kb	9	6	6	HSFNRTVDL	HSFNRAVDL	SMMPMBEC	278.773	388.374	1.393	180	0.306	459.32	495.717	1.079	531.2	555.76	480.8	527.7	510.6343193	390.9399022	388.3738676	278.7725451	M7_p20	-0.2	-0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.299	180	0	0	NA	14qB	chr14-19751082-41183403	3	2	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr14	70566157	70566157	A	G	ENSMUST00000161069.7	1	ENSMUSG00000022096	missense	M/V	773	Hr	ENSMUST00000161069.7:c.2317A>G	ENSMUSP00000124816.1:p.Met773Val	H-2-Kb	8	9	3	IHVAFAPV	IHMAFAPV	NetMHC	12.04	7.34	0.61	43	0.419	36.162	24.441	0.676	7.34	12.04	25.4	46.9	28.16696149	36.36972355	23.48226582	35.95340277	M7_p20	1.428571429	1.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.531	43	0	0	NA	14qD2	chr14-53336808-75777336	3	2	1	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr14	52036009	52036009	A	G	ENSMUST00000214071.1	5	ENSMUSG00000044286	missense	M/T	34	Olfr221	ENSMUST00000214071.1:c.101T>C	ENSMUSP00000150675.1:p.Met34Thr	H-2-Kb	8	10	2	VTYAITVL	VMYAITVL	NetMHCpan	26.2	23.8	0.908	101	0.376	60.149	92.464	1.537	54.39	47.73	23.8	26.2	137.3219621	75.63799359	130.5389154	72.56713881	M7_p20	1.657142857	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.4	101	0	0	NA	14qC2	chr14-44505690-52852156	3	2	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr15	85816500	85816500	A	G	ENSMUST00000064370.5	NA	ENSMUSG00000052496	missense	V/A	1745	Pkdrej	ENSMUST00000064370.5:c.5234T>C	ENSMUSP00000086352.2:p.Val1745Ala	H-2-Kb	8	5	7	VYHSYGAL	VYHSYGVL	NetMHC	51.44	205.07	3.987	238	0.298	81.16	186.929	2.303	205.07	51.44	153.8	90.3	195.3169797	82.93541077	178.5418375	79.38528349	M7_p20	-0.2	-0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.29	238	0	0	NA	15qE2	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr14	55636269	55636269	GA	G	ENSMUST00000122358.7	1	ENSMUSG00000002320	FS	S/X	591	Tm9sf1	ENSMUST00000122358.7:c.1771del	ENSMUSP00000113782.1:p.Ser591ProfsTer3	H-2-Kb	8	5	7	GTISFFPL	GTISFFSS	NetMHCpan	30.6	3875.2	126.641	65	0.369	48.755	2744.296	56.288	10230.88	66.3	3875.2	30.6	1613.392375	58.9847849	1454.587999	38.52476516	M7_p20	1.542857143	1.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.359	65	0	0	NA	14qC3	chr14-53336808-75777336	3	2	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr14	65975611	65975611	T	G	ENSMUST00000022616.13	1	ENSMUSG00000022037	missense	F/V	149	Clu	ENSMUST00000022616.13:c.445T>G	ENSMUSP00000022616.6:p.Phe149Val	H-2-Kb	8	8	4	SSPVYFWM	SSPFYFWM	NetMHCpan	60.6	40.4	0.667	73	0.233	147.752	201.93	1.367	223.25	116.55	40.4	60.6	180.6092545	178.9534189	234.2825811	206.8902384	M7_p20	0.614285714	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.26	73	0	0	NA	14qD1	chr14-53336808-75777336	3	2	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr14	103177262	103177262	GA	G	ENSMUST00000159855.7	1	ENSMUSG00000033004	FS	F/X	2571	Mycbp2	ENSMUST00000159855.7:c.7713del	ENSMUSP00000124710.1:p.Gln2573ArgfsTer14	H-2-Kb	8	8	6	KAFFPRNL	KAFFPQEP	NetMHCpan	57.6	16323.4	283.392	163	0.399	126.941	20665.292	162.795	19059.57	128.93	16323.4	57.6	22271.01447	124.9510759	33553.66776	167.3940435	M7_p20	0.228571429	0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.406	163	0	0	NA	14qE2.3	chr14-75846995-123291781	3	2	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr15	8228693	8228693	C	T	ENSMUST00000110617.1	5	ENSMUSG00000039801	missense	P/L	2141	Cplane1	ENSMUST00000110617.1:c.6422C>T	ENSMUSP00000106247.1:p.Pro2141Leu	H-2-Kb	8	7	5	ASFPLAPA	ASFPPAPA	SMMPMBEC	236.995	674.124	2.844	44	0.205	262.187	998.639	3.809	1421.37	256	1321.6	326.5	675.6783445	268.3737286	674.1243274	236.9954455	M7_p20	0.885714286	0.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.258	44	0	0	NA	15qA1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr14	50767276	50767276	A	C	ENSMUST00000006451.7	1	ENSMUSG00000006288	missense	L/W	357	Ttc5	ENSMUST00000006451.7:c.1070T>G	ENSMUSP00000006451.6:p.Leu357Trp	H-2-Kb	8	5	7	VPFTFGWV	VPFTFGLV	SMM	58.444	34.893	0.597	68	0.294	289.376	48.781	0.169	58.86	512.57	161.8	603.5	34.89313575	58.44400914	38.70258739	66.18201718	M7_p20	0.885714286	0.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.295	68	0	0	NA	14qC1	chr14-44505690-52852156	3	2	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr15	76067353	76067353	C	T	ENSMUST00000002603.11	1	ENSMUSG00000022568	missense	R/H	128	Scrib	ENSMUST00000002603.11:c.383G>A	ENSMUSP00000002603.5:p.Arg128His	H-2-Kb	8	11	1	HSLAHLAL	RSLAHLAL	SMM	236.45	89.277	0.378	107	0.206	409.701	113.065	0.276	102.61	555.32	209.6	648.2	89.27708467	236.4503711	123.5207728	264.0827294	M7_p20	1.571428571	1.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.214	107	0	0	NA	15qD3	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	0.99993642	sgMsh2	cell line
chr15	28378421	28378421	T	C	ENSMUST00000067048.7	5	ENSMUSG00000022262	missense	F/L	2968	Dnah5	ENSMUST00000067048.7:c.8902T>C	ENSMUSP00000069751.6:p.Phe2968Leu	H-2-Kb	9	3	9	QSLTRLASL	QSLTRLASF	NetMHC	48.02	238.26	4.962	164	0.25	133.757	254.704	1.904	238.26	48.02	526.7	122.6	244.4049514	144.9138851	265.0025177	153.196908	M7_p20	1.028571429	1.028571429	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.255	164	0	0	NA	15qB1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr15	85816500	85816500	A	G	ENSMUST00000064370.5	NA	ENSMUSG00000052496	missense	V/A	1745	Pkdrej	ENSMUST00000064370.5:c.5234T>C	ENSMUSP00000086352.2:p.Val1745Ala	H-2-Kb	9	4	8	WVYHSYGAL	WVYHSYGVL	NetMHC	52.34	145.67	2.783	238	0.298	78.726	132.471	1.683	145.67	52.34	123	69.5	141.9416992	100.7186741	108.9557112	87.95286685	M7_p20	-0.2	-0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.29	238	0	0	NA	15qE2	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr15	56668003	56668003	A	G	ENSMUST00000050544.7	1	ENSMUSG00000022367	missense	Y/H	439	Has2	ENSMUST00000050544.7:c.1315T>C	ENSMUSP00000062212.7:p.Tyr439His	H-2-Kb	9	11	1	HSVLYMSSL	YSVLYMSSL	NetMHC	79.13	28.91	0.365	260	0.269	205.3	111.439	0.543	28.91	79.13	30.9	92.1	203.287184	318.5004131	191.9773533	324.526376	M7_p20	1.542857143	1.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.251	260	0	0	NA	15qD1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr14	70566157	70566157	A	G	ENSMUST00000161069.7	1	ENSMUSG00000022096	missense	M/V	773	Hr	ENSMUST00000161069.7:c.2317A>G	ENSMUSP00000124816.1:p.Met773Val	H-2-Kb	9	8	4	RIHVAFAPV	RIHMAFAPV	NetMHC	90.85	86.69	0.954	43	0.419	436.557	470.023	1.077	86.69	90.85	152.8	204.6	787.2451613	668.5132201	871.4651012	912.5359861	M7_p20	1.428571429	1.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.531	43	0	0	NA	14qD2	chr14-53336808-75777336	3	2	1	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr15	28411635	28411635	G	A	ENSMUST00000067048.7	5	ENSMUSG00000022262	missense	V/M	3717	Dnah5	ENSMUST00000067048.7:c.11149G>A	ENSMUSP00000069751.6:p.Val3717Met	H-2-Kb	9	3	9	SIIDFTVTM	SIIDFTVTV	NetMHCpan	67.6	186	2.751	77	0.195	217.133	356.975	1.644	214.94	142.45	186	67.6	499.0108631	291.8166046	562.6651281	340.6042008	M7_p20	1.214285714	1.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.22	77	0	0	NA	15qB1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr15	30775195	30775195	A	T	ENSMUST00000081728.6	1	ENSMUSG00000022240	missense	Q/H	571	Ctnnd2	ENSMUST00000081728.6:c.1713A>T	ENSMUSP00000080427.5:p.Gln571His	H-2-Kb	9	7	5	AAYLHHLCF	AAYLQHLCF	SMMPMBEC	102.861	339.039	3.296	107	0.178	127.845	452.272	3.538	697.87	200.55	560.9	137.9	343.6449768	117.790428	339.0392667	102.8608242	M7_p20	0.742857143	0.742857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.203	107	0	0	NA	15qB2	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	0.948537819	sgMsh2	cell line
chr14	56804452	56804452	AT	A	ENSMUST00000173954.2	1	ENSMUSG00000040123	FS	N/X	123	Zmym5	ENSMUST00000173954.2:c.368del	ENSMUSP00000134057.1:p.Asn123MetfsTer18	H-2-Kb	9	8	4	STKMWISPL	NA	NetMHCpan	170.5	NA	NA	98	0.255	280.012	NA	NA	NA	207.45	NA	170.5	NA	447.8267173	NA	352.5737704	M7_p20	0.428571429	0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.26	98	0	0	NA	14qC3	chr14-53336808-75777336	3	2	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr14	56761852	56761852	A	C	ENSMUST00000022507.12	1	ENSMUSG00000021938	missense	L/V	316	Pspc1	ENSMUST00000022507.12:c.946T>G	ENSMUSP00000022507.5:p.Leu316Val	H-2-Kb	9	11	1	VMLMRQDLM	LMLMRQDLM	SMM	117.249	337.373	2.877	153	0.353	170.678	505.031	2.959	672.69	215.68	1505.6	463.1	337.3727491	117.2492302	325.2744865	125.6753201	M7_p20	-0.014285714	0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.348	153	0	0	NA	14qC3	chr14-53336808-75777336	3	2	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr15	56668003	56668003	A	G	ENSMUST00000050544.7	1	ENSMUSG00000022367	missense	Y/H	439	Has2	ENSMUST00000050544.7:c.1315T>C	ENSMUSP00000062212.7:p.Tyr439His	H-2-Kb	9	6	6	VFMSLHSVL	VFMSLYSVL	SMM	239.392	68.408	0.286	260	0.269	258.916	80.373	0.31	102.48	279.46	73.6	239.7	68.40848933	239.3922023	87.14651012	278.131386	M7_p20	1.271428571	1.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.251	260	0	0	NA	15qD1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr15	10988924	10988924	T	C	ENSMUST00000070877.6	1	ENSMUSG00000022244	missense	F/L	239	Amacr	ENSMUST00000070877.6:c.715T>C	ENSMUSP00000066915.5:p.Phe239Leu	H-2-Kb	9	7	5	IEPQLYALL	IEPQFYALL	NetMHC	319.08	19.25	0.06	105	0.276	409.155	102.272	0.25	19.25	319.08	89.7	836.6	114.8444468	421.8033261	121.6886295	396.5062159	M7_p20	0.971428571	0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.304	105	0	0	NA	15qA1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr15	58889378	58889378	T	G	ENSMUST00000036904.6	1	ENSMUSG00000037075	missense	L/R	22	Rnf139	ENSMUST00000036904.6:c.65T>G	ENSMUSP00000046467.6:p.Leu22Arg	H-2-Kb	9	7	5	VWAAREVAL	VWAALEVAL	SMM	127.09	314.855	2.477	29	0.276	252.097	659.527	2.616	830.12	321.7	1526	1179.2	314.8545691	127.0895963	488.9337312	182.4945923	M7_p20	0.771428571	0.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.285	29	0	0	NA	15qD1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr14	52036009	52036009	A	G	ENSMUST00000214071.1	5	ENSMUSG00000044286	missense	M/T	34	Olfr221	ENSMUST00000214071.1:c.101T>C	ENSMUSP00000150675.1:p.Met34Thr	H-2-Kb	9	6	6	VVFLVTYAI	VVFLVMYAI	NetMHC	404.46	257.9	0.638	101	0.376	474.826	410.59	0.865	257.9	404.46	656.7	462	397.2921646	487.6519891	423.8869047	600.1364431	M7_p20	2.157142857	2.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.4	101	0	0	NA	14qC2	chr14-44505690-52852156	3	2	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr15	60823463	60823463	A	T	ENSMUST00000100635.4	1	ENSMUSG00000072568	missense	L/M	145	Lratd2	ENSMUST00000100635.4:c.433T>A	ENSMUSP00000098200.3:p.Leu145Met	H-2-Kb	9	8	4	VVHMHRLEV	VVHLHRLEV	NetMHC	414.3	407.58	0.984	50	0.3	438.755	420.67	0.959	407.58	414.3	821.9	739.1	359.0128555	432.6233939	433.7604991	444.8872915	M7_p20	-0.642857143	0.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.315	50	0	0	NA	15qD1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr14	120022532	120022532	A	G	ENSMUST00000058213.5	1	ENSMUSG00000044819	missense	F/L	88	Oxgr1	ENSMUST00000058213.5:c.262T>C	ENSMUSP00000055137.5:p.Phe88Leu	H-2-Kb	9	3	9	LLYLTSLPL	LLYLTSLPF	NetMHCpan	283.7	802.5	2.829	118	0.381	388.762	796.015	2.048	789.53	420.16	802.5	283.7	602.7122243	357.3633412	908.3432641	525.1096507	M7_p20	1	1.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.381	118	0	0	NA	14qE4	chr14-75846995-123291781	3	2	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr14	103177262	103177262	GA	G	ENSMUST00000159855.7	1	ENSMUSG00000033004	FS	F/X	2571	Mycbp2	ENSMUST00000159855.7:c.7713del	ENSMUSP00000124710.1:p.Gln2573ArgfsTer14	H-2-Kb	9	9	5	AFFPRNLKL	AFFPQEPKT	NetMHCpan	344.2	14946.7	43.424	163	0.399	446.4	7207.152	16.145	10007.64	580.16	14946.7	344.2	4406.664633	526.1505152	4001.750427	366.6485738	M7_p20	-0.442857143	0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.406	163	0	0	NA	14qE2.3	chr14-75846995-123291781	3	2	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr15	98312954	98312954	A	T	ENSMUST00000216901.1	5	ENSMUSG00000062037	missense	C/S	199	Olfr285	ENSMUST00000216901.1:c.595T>A	ENSMUSP00000150788.1:p.Cys199Ser	H-2-Db	9	7	5	TAIVSTFVI	TAIVCTFVI	NetMHC	80.43	162.74	2.023	186	0.027	177.487	324.243	1.827	162.74	80.43	489.9	153.8	372.0660126	234.2178554	276.420342	201.1731425	M7_p20	2.671428571	2.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.041	186	0	0	NA	15qF1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	0.191576604	sgMsh2	cell line
chr15	99993387	99993387	A	G	ENSMUST00000100206.3	1	ENSMUSG00000023025	missense	N/S	231	Larp4	ENSMUST00000100206.3:c.692A>G	ENSMUSP00000097780.2:p.Asn231Ser	H-2-Db	9	8	4	FAHSSNWYI	FAHNSNWYI	NetMHCpan	192.8	342.1	1.774	167	0.222	266.311	425.042	1.596	583.28	237.76	342.1	192.8	386.0290606	294.86281	464.0555809	344.8021776	M7_p20	-0.857142857	-0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.221	167	0	0	NA	15qF1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr16	36615278	36615278	A	G	ENSMUST00000089620.10	1	ENSMUSG00000022901	missense	L/P	259	Cd86	ENSMUST00000089620.10:c.776T>C	ENSMUSP00000087047.4:p.Leu259Pro	H-2-Db	9	4	8	VALLLVMPL	VALLLVMLL	SMM	119.845	386.029	3.221	192	0.214	259.265	1602.2	6.18	2784.09	391.89	5782.3	529.9	386.0290606	119.8450221	420.3102682	126.639737	M7_p20	2.814285714	3.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.235	192	0	0	NA	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr16	37818952	37818952	T	C	ENSMUST00000114763.2	1	ENSMUSG00000022816	missense	Y/H	71	Fstl1	ENSMUST00000114763.2:c.211T>C	ENSMUSP00000110411.2:p.Tyr71His	H-2-Db	9	9	3	KTHLNHCEL	KTYLNHCEL	NetMHCpan	269.5	150.1	0.557	169	0.237	479.168	336.922	0.703	635.98	663.95	150.1	269.5	368.6548909	458.7963984	305.1897897	499.53969	M7_p20	-0.471428571	-0.471428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.231	169	0	0	NA	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr16	8409720	8409720	A	C	ENSMUST00000023400.3	1	ENSMUSG00000022715	missense	S/A	160	Tmem114	ENSMUST00000023400.3:c.478T>G	ENSMUSP00000023400.2:p.Ser160Ala	H-2-Kb	8	6	6	IYIAYAAV	IYIAYSAV	NetMHC	22.63	53.26	2.354	87	0.172	57.045	111.931	1.962	53.26	22.63	96	57.5	127.8615603	56.59003988	137.6385219	57.90819124	M7_p20	1.642857143	1.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.175	87	0	0	NA	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	0.817705016	sgMsh2	cell line
chr16	32959460	32959460	T	C	ENSMUST00000135193.8	5	ENSMUSG00000022801	missense	C/R	236	Lrch3	ENSMUST00000135193.8:c.706T>C	ENSMUSP00000130708.1:p.Cys236Arg	H-2-Kb	8	8	4	IPVRYRNL	IPVCYRNL	SMM	25.395	50.089	1.972	91	0.187	26.67	75.164	2.818	92.42	26.87	346.6	278.9	50.08872766	25.39451951	57.90819124	26.4691503	M7_p20	-1.057142857	-0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.196	91	0	0	NA	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	0.915829618	sgMsh2	cell line
chr15	85816891	85816891	A	G	ENSMUST00000064370.5	NA	ENSMUSG00000052496	missense	F/L	1615	Pkdrej	ENSMUST00000064370.5:c.4843T>C	ENSMUSP00000086352.2:p.Phe1615Leu	H-2-Kb	8	4	8	DSFYYNQL	DSFYYNQF	NetMHC	29.16	620.17	21.268	156	0.256	42.544	589.135	13.848	620.17	29.16	558.1	52.8	677.2359439	41.66198901	545.4312289	43.42501729	M7_p20	-0.542857143	-0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.245	156	0	0	NA	15qE2	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr16	44488543	44488543	G	A	ENSMUST00000114634.2	1	ENSMUSG00000022687	missense	P/S	869	Boc	ENSMUST00000114634.2:c.2605C>T	ENSMUSP00000110281.2:p.Pro869Ser	H-2-Kb	8	7	5	VTFISFCL	VTFIPFCL	NetMHCpan	30.7	45.3	1.476	46	0.217	56.284	73.896	1.313	58.72	48.78	45.3	30.7	89.07175307	63.788149	101.5640475	72.56713881	M7_p20	2.128571429	2.185714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.207	46	0	0	NA	16qB4	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	0.967228219	sgMsh2	cell line
chr15	99699089	99699089	T	C	ENSMUST00000023758.8	1	ENSMUSG00000023017	missense	I/T	511	Asic1	ENSMUST00000023758.8:c.1532T>C	ENSMUSP00000023758.7:p.Ile511Thr	H-2-Kb	8	5	7	MTYAANTL	MTYAANIL	NetMHCpan	73.5	190.6	2.593	122	0.205	97.724	246.904	2.527	408.38	114.4	190.6	73.5	185.6692572	81.04757034	303.2075422	116.0753495	M7_p20	0.171428571	0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.202	122	0	0	NA	15qF1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	0.943865219	sgMsh2	cell line
chr15	94338749	94338749	A	C	ENSMUST00000035342.10	1	ENSMUSG00000022449	missense	S/A	797	Adamts20	ENSMUST00000035342.10:c.2389T>G	ENSMUSP00000036330.4:p.Ser797Ala	H-2-Kb	8	4	8	AVFEYSGA	AVFEYSGS	NetMHC	141.13	803.55	5.694	84	0.155	224.534	515.987	2.298	803.55	141.13	976.2	228.4	170.1139779	273.9933359	228.4230889	220.6683258	M7_p20	0.4	0.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.167	84	0	0	NA	15qE3	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	0.780324215	sgMsh2	cell line
chr16	44488543	44488543	G	A	ENSMUST00000114634.2	1	ENSMUSG00000022687	missense	P/S	869	Boc	ENSMUST00000114634.2:c.2605C>T	ENSMUSP00000110281.2:p.Pro869Ser	H-2-Kb	8	5	7	IIVTFISF	IIVTFIPF	NetMHC	210.94	98.54	0.467	46	0.217	229.301	115.038	0.502	98.54	210.94	114.8	217.2	158.7596015	327.8989304	115.2762924	241.4015198	M7_p20	2.471428571	2.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.207	46	0	0	NA	16qB4	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	0.967228219	sgMsh2	cell line
chr16	52189136	52189136	CT	C	ENSMUST00000114471.2	1	ENSMUSG00000022637	FS	L/X	807	Cblb	ENSMUST00000114471.2:c.2423del	ENSMUSP00000110115.1:p.Phe808SerfsTer98	H-2-Kb	8	24	0	VAKFHCLL	NA	NetMHCpan	79.3	NA	NA	16	0.188	328.685	NA	NA	NA	228.09	NA	79.3	NA	429.2793522	NA	518.4895408	M7_p20	1.085714286	1.142857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.224	16	0	0	NA	16qB5	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr16	8409720	8409720	A	C	ENSMUST00000023400.3	1	ENSMUSG00000022715	missense	S/A	160	Tmem114	ENSMUST00000023400.3:c.478T>G	ENSMUSP00000023400.2:p.Ser160Ala	H-2-Kb	8	8	4	IAYAAVAF	IAYSAVAF	NetMHCpan	156.4	150.8	0.964	87	0.172	363.079	335.015	0.923	203.65	252.2	150.8	156.4	510.1994663	483.8825938	466.380088	473.9581548	M7_p20	1.842857143	2.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.175	87	0	0	NA	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	0.817705016	sgMsh2	cell line
chr16	45980623	45980623	T	C	ENSMUST00000130481.1	1	ENSMUSG00000087141	missense	I/M	79	Plcxd2	ENSMUST00000130481.1:c.237A>G	ENSMUSP00000114852.1:p.Ile79Met	H-2-Kb	8	9	3	AVMRLARI	AVIRLARI	NetMHCpan	236.5	301.6	1.275	68	0.118	350.618	337.313	0.962	234.74	252.76	301.6	236.5	526.9143181	779.3633877	373.0267702	448.476819	M7_p20	1.028571429	1.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.132	68	0	0	NA	16qB5	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	0.616783212	sgMsh2	cell line
chr16	56732892	56732892	T	A	ENSMUST00000023437.4	1	ENSMUSG00000022755	missense	D/V	614	Adgrg7	ENSMUST00000023437.4:c.1841A>T	ENSMUSP00000023437.4:p.Asp614Val	H-2-Kb	8	10	2	NVYARSPL	NDYARSPL	NetMHCpan	265.7	4526.8	17.037	188	0.16	295.064	3044.506	10.318	10998.42	291.08	4526.8	265.7	1562.21211	332.4604589	1451.242539	299.0473787	M7_p20	0.228571429	0.228571429	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.161	188	0	0	NA	16qC1.1	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	0.752288615	sgMsh2	cell line
chr15	101568342	101568342	T	C	ENSMUST00000042957.5	1	ENSMUSG00000022986	missense	M/V	371	Krt75	ENSMUST00000042957.5:c.1111A>G	ENSMUSP00000036246.5:p.Met371Val	H-2-Kb	8	11	1	VNRMIQRL	MNRMIQRL	NetMHCpan	246.9	571	2.313	181	0.215	362.208	890.061	2.457	1363.82	316.34	571	246.9	915.6721386	429.2793522	864.4502416	408.0750101	M7_p20	-0.828571429	-0.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.223	181	0	0	NA	15qF2	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr15	98497551	98497551	TC	T	ENSMUST00000216822.1	5	ENSMUSG00000054036	FS	L/X	26	Olfr279	ENSMUST00000216822.1:c.81del	ENSMUSP00000150851.1:p.Phe28LeufsTer5	H-2-Kb	8	6	8	KHLGFLPL	KHLGFLPF	SMM	162.832	2646.915	16.255	81	0.272	248.471	2462.946	9.912	2758.87	327.53	1105.9	315.5	2646.91503	162.832091	2278.977303	181.4429089	M7_p20	1.285714286	1.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.245	81	0	0	NA	15qF1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr15	99993387	99993387	A	G	ENSMUST00000100206.3	1	ENSMUSG00000023025	missense	N/S	231	Larp4	ENSMUST00000100206.3:c.692A>G	ENSMUSP00000097780.2:p.Asn231Ser	H-2-Kb	8	4	8	ISCEFAHS	ISCEFAHN	SMM	44.745	39.061	0.873	167	0.222	193.959	1659.295	8.555	3279.35	335.83	6689.5	1646.1	39.06069803	44.74453509	39.24099402	52.08827797	M7_p20	-0.171428571	0.585714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.221	167	0	0	NA	15qF1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr15	98835241	98835241	T	A	ENSMUST00000023741.15	5	ENSMUSG00000048154	missense	I/F	5478	Kmt2d	ENSMUST00000023741.15:c.16432A>T	ENSMUSP00000023741.8:p.Ile5478Phe	H-2-Kb	8	7	5	VIEYFGTI	VIEYIGTI	NetMHCpan	181	1731.1	9.564	69	0.333	399.806	7152.32	17.889	5739.39	457.05	1731.1	181	15694.22953	497.4391928	8565.249141	342.5626424	M7_p20	0.842857143	0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.34	69	0	0	NA	15qF1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr16	44488543	44488543	G	A	ENSMUST00000114634.2	1	ENSMUSG00000022687	missense	P/S	869	Boc	ENSMUST00000114634.2:c.2605C>T	ENSMUSP00000110281.2:p.Pro869Ser	H-2-Kb	8	10	2	ISFCLWRA	IPFCLWRA	SMMPMBEC	286.246	2059.397	7.194	46	0.217	448.016	4103.472	9.159	14967.77	2420.96	6010.4	565.1	2196.544469	330.9329418	2059.396641	286.246378	M7_p20	0.671428571	1.057142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.207	46	0	0	NA	16qB4	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	0.967228219	sgMsh2	cell line
chr16	32959460	32959460	T	C	ENSMUST00000135193.8	5	ENSMUSG00000022801	missense	C/R	236	Lrch3	ENSMUST00000135193.8:c.706T>C	ENSMUSP00000130708.1:p.Cys236Arg	H-2-Kb	9	7	5	VIPVRYRNL	VIPVCYRNL	NetMHC	4.32	5.83	1.35	91	0.187	39.398	84.597	2.147	5.83	4.32	35.5	30.7	133.6934098	48.0961153	179.9906727	63.8631006	M7_p20	-1.057142857	0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.196	91	0	0	NA	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	0.915829618	sgMsh2	cell line
chr16	8409720	8409720	A	C	ENSMUST00000023400.3	1	ENSMUSG00000022715	missense	S/A	160	Tmem114	ENSMUST00000023400.3:c.478T>G	ENSMUSP00000023400.2:p.Ser160Ala	H-2-Kb	9	5	7	SIYIAYAAV	SIYIAYSAV	NetMHC	5.3	8.65	1.632	87	0.172	43.053	48.149	1.118	8.65	5.3	24.5	19.1	71.79761204	67.00543022	97.77999259	82.65135921	M7_p20	1.642857143	1.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.175	87	0	0	NA	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	0.817705016	sgMsh2	cell line
chr15	98835241	98835241	T	A	ENSMUST00000023741.15	5	ENSMUSG00000048154	missense	I/F	5478	Kmt2d	ENSMUST00000023741.15:c.16432A>T	ENSMUSP00000023741.8:p.Ile5478Phe	H-2-Kb	9	6	6	MVIEYFGTI	MVIEYIGTI	NetMHCpan	24.8	141	5.685	69	0.333	141.246	604.389	4.279	446.26	59.52	141	24.8	873.1925064	246.6664026	762.5178243	222.9718309	M7_p20	0.842857143	1.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.34	69	0	0	NA	15qF1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr16	36615278	36615278	A	G	ENSMUST00000089620.10	1	ENSMUSG00000022901	missense	L/P	259	Cd86	ENSMUST00000089620.10:c.776T>C	ENSMUSP00000087047.4:p.Leu259Pro	H-2-Kb	9	4	8	VALLLVMPL	VALLLVMLL	NetMHC	63.11	150.8	2.389	192	0.214	124.012	228.193	1.84	150.8	63.11	354.9	84.3	208.5018919	163.7231154	247.8848587	177.9303365	M7_p20	2.814285714	3.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.235	192	0	0	NA	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr16	32959460	32959460	T	C	ENSMUST00000135193.8	5	ENSMUSG00000022801	missense	C/R	236	Lrch3	ENSMUST00000135193.8:c.706T>C	ENSMUSP00000130708.1:p.Cys236Arg	H-2-Kb	9	10	2	VRYRNLRHL	VCYRNLRHL	NetMHC	134.72	74.69	0.554	91	0.187	264.699	138.58	0.524	74.69	134.72	91.7	491.7	220.8564057	228.6177783	185.4598909	300.7807237	M7_p20	-1.342857143	-1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.196	91	0	0	NA	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	0.915829618	sgMsh2	cell line
chr16	32847841	32847841	T	A	ENSMUST00000089684.9	1	ENSMUSG00000035629	missense	K/I	152	Rubcn	ENSMUST00000089684.9:c.455A>T	ENSMUSP00000087114.3:p.Lys152Ile	H-2-Kb	9	11	1	IFYTETAFL	KFYTETAFL	NetMHCpan	99.5	326.2	3.278	42	0.214	205.341	636.187	3.098	596.12	150.6	326.2	99.5	676.2542383	260.0818226	802.1396792	274.3152803	M7_p20	0.314285714	0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	42	0	0	NA	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr16	33975874	33975874	A	G	ENSMUST00000076810.11	5	ENSMUSG00000061751	missense	L/P	2846	Kalrn	ENSMUST00000076810.11:c.8537T>C	ENSMUSP00000076088.5:p.Leu2846Pro	H-2-Kb	9	6	6	LTYVMPSGV	LTYVMLSGV	NetMHC	188	49.73	0.265	108	0.306	325.494	137.237	0.422	49.73	188	141.7	338.3	132.7730709	312.6871254	185.033345	441.8247089	M7_p20	0.885714286	0.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.338	108	0	0	NA	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr16	52189136	52189136	CT	C	ENSMUST00000114471.2	1	ENSMUSG00000022637	FS	L/X	807	Cblb	ENSMUST00000114471.2:c.2423del	ENSMUSP00000110115.1:p.Phe808SerfsTer98	H-2-Kb	9	23	0	QVAKFHCLL	NA	NetMHCpan	182.2	NA	NA	16	0.188	246.304	NA	NA	NA	221.52	NA	182.2	NA	271.0878168	NA	463.713778	M7_p20	1.085714286	1.142857143	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.224	16	0	0	NA	16qB5	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr16	45980623	45980623	T	C	ENSMUST00000130481.1	1	ENSMUSG00000087141	missense	I/M	79	Plcxd2	ENSMUST00000130481.1:c.237A>G	ENSMUSP00000114852.1:p.Ile79Met	H-2-Kb	9	8	4	QAVMRLARI	QAVIRLARI	NetMHC	233.36	309.48	1.326	68	0.118	370.477	381.287	1.029	309.48	233.36	1087.9	791.3	388.2486909	377.6678362	374.3260056	363.2871195	M7_p20	1.028571429	1.028571429	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.132	68	0	0	NA	16qB5	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	0.616783212	sgMsh2	cell line
chr16	59216355	59216355	TA	T	ENSMUST00000214186.1	5	ENSMUSG00000074996	FS	L/X	86	Olfr199	ENSMUST00000214186.1:c.257del	ENSMUSP00000150643.1:p.Leu86TyrfsTer7	H-2-Kb	9	6	6	MLLNFYLQI	MLLNFLSTN	NetMHCpan	124.6	10572.2	84.849	222	0.279	270.035	7718.752	28.584	13758.05	239.29	10572.2	124.6	4865.304206	443.7210173	3135.089908	300.7807237	M7_p20	0.942857143	1.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.283	222	0	0	NA	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr16	52189136	52189136	CT	C	ENSMUST00000114471.2	1	ENSMUSG00000022637	FS	L/X	807	Cblb	ENSMUST00000114471.2:c.2423del	ENSMUSP00000110115.1:p.Phe808SerfsTer98	H-2-Kb	9	12	1	SFFLQIPFL	NA	NetMHCpan	171.2	NA	NA	16	0.188	315.8	NA	NA	NA	279.95	NA	171.2	NA	351.6494966	NA	481.1162215	M7_p20	1.8	1.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.224	16	0	0	NA	16qB5	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr16	56732892	56732892	T	A	ENSMUST00000023437.4	1	ENSMUSG00000022755	missense	D/V	614	Adgrg7	ENSMUST00000023437.4:c.1841A>T	ENSMUSP00000023437.4:p.Asp614Val	H-2-Kb	9	10	2	NVYARSPLL	NDYARSPLL	SMM	164.101	645.818	3.936	188	0.16	201.99	2229.315	11.037	7330.33	282.68	3720.3	170.5	645.8177839	164.1005362	738.3291242	233.4801695	M7_p20	0.171428571	0.228571429	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.161	188	0	0	NA	16qC1.1	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	0.752288615	sgMsh2	cell line
chr16	52189136	52189136	CT	C	ENSMUST00000114471.2	1	ENSMUSG00000022637	FS	L/X	807	Cblb	ENSMUST00000114471.2:c.2423del	ENSMUSP00000110115.1:p.Phe808SerfsTer98	H-2-Kb	9	11	2	LSFFLQIPF	NA	SMMPMBEC	213.919	NA	NA	16	0.188	221.659	NA	NA	NA	297.87	NA	214.7	NA	228.6177783	NA	213.9193154	M7_p20	1.657142857	1.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.224	16	0	0	NA	16qB5	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr15	96691378	96691378	T	C	ENSMUST00000023099.7	1	ENSMUSG00000022462	missense	I/V	412	Slc38a2	ENSMUST00000023099.7:c.1234A>G	ENSMUSP00000023099.6:p.Ile412Val	H-2-Kb	9	4	8	FSWLRHSVI	FSWLRHSII	NetMHCpan	168	191.7	1.141	159	0.044	272.54	254.481	0.934	263.35	305.61	191.7	168	279.3251239	331.9785319	245.6122367	239.4693856	M7_p20	0.442857143	0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.051	159	0	0	NA	15qF1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	0.238302605	sgMsh2	cell line
chr16	44488543	44488543	G	A	ENSMUST00000114634.2	1	ENSMUSG00000022687	missense	P/S	869	Boc	ENSMUST00000114634.2:c.2605C>T	ENSMUSP00000110281.2:p.Pro869Ser	H-2-Kb	9	7	5	VTFISFCLW	VTFIPFCLW	SMMPMBEC	254.83	300.781	1.18	46	0.217	360.434	355.033	0.985	342.69	342.33	859.5	564.4	367.3753391	378.5384504	300.7807237	254.8296748	M7_p20	2.1	2.185714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.207	46	0	0	NA	16qB4	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	0.967228219	sgMsh2	cell line
chr16	17342352	17342352	T	C	ENSMUST00000023450.14	1	ENSMUSG00000022766	missense	V/A	371	Serpind1	ENSMUST00000023450.14:c.1112T>C	ENSMUSP00000023450.6:p.Val371Ala	H-2-Kb	9	5	7	TNRTREALL	TNRTREVLL	SMMPMBEC	176.299	238.919	1.355	122	0.262	291.863	432.697	1.483	594.93	396.18	2092.8	1411.6	270.4643321	187.5469475	238.9186213	176.2990613	M7_p20	-0.542857143	-0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.254	122	0	0	NA	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr16	45980623	45980623	T	C	ENSMUST00000130481.1	1	ENSMUSG00000087141	missense	I/M	79	Plcxd2	ENSMUST00000130481.1:c.237A>G	ENSMUSP00000114852.1:p.Ile79Met	H-2-Kb	9	10	2	VMRLARISL	VIRLARISL	SMM	265.528	594.443	2.239	68	0.118	421.74	853.84	2.025	838.22	423.48	1367.8	683.8	594.4427026	265.5278017	869.4607871	420.0006862	M7_p20	0.585714286	1.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.132	68	0	0	NA	16qB5	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	0.616783212	sgMsh2	cell line
chr16	43982105	43982105	A	G	ENSMUST00000036174.9	1	ENSMUSG00000036292	missense	F/L	443	Gramd1c	ENSMUST00000036174.9:c.1327T>C	ENSMUSP00000036739.3:p.Phe443Leu	H-2-Kb	9	5	7	IMLQKTLDL	IMLQKTFDL	SMMPMBEC	261.367	256.596	0.982	172	0.221	403.129	347.19	0.861	400.54	478.08	556.5	644	293.8393807	328.178405	256.5960697	261.3665468	M7_p20	-0.028571429	0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.231	172	0	0	NA	16qB4	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr17	56632320	56632320	T	G	ENSMUST00000112979.3	1	ENSMUSG00000040828	missense	F/V	50	Catsperd	ENSMUST00000112979.3:c.148T>G	ENSMUSP00000108603.2:p.Phe50Val	H-2-Db	9	5	7	YAFPNTVVL	YAFPNTFVL	NetMHCpan	9.1	7.6	0.835	227	0.238	33.615	30.922	0.92	12.57	10.27	7.6	9.1	49.27424743	62.03260224	49.83907806	56.96000254	M7_p20	1.314285714	1.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.237	227	0	0	NA	17qD	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr17	3453370	3453370	T	G	ENSMUST00000072156.6	1	ENSMUSG00000023800	missense	F/V	941	Tiam2	ENSMUST00000072156.6:c.2821T>G	ENSMUSP00000072020.6:p.Phe941Val	H-2-Db	9	4	8	HQHLNRIVI	HQHLNRIFI	NetMHC	52.68	34.23	0.65	366	0.254	177.453	103.995	0.586	34.23	52.68	102.4	240	105.5893217	162.7871051	145.4018727	192.1188596	M7_p20	0.828571429	0.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	366	0	0	NA	17qA1	chr17-3079405-14988397	4	3	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr17	25883786	25883786	C	T	ENSMUST00000167626.7	1	ENSMUSG00000025730	missense	G/S	230	Rab40c	ENSMUST00000167626.7:c.688G>A	ENSMUSP00000127546.1:p.Gly230Ser	H-2-Db	9	6	6	FSMANSMNA	FSMANGMNA	NetMHCpan	175.5	176.2	1.004	79	0.19	311.538	315.827	1.014	312.78	299.02	176.2	175.5	318.8746537	324.05595	346.3937122	358.5667377	M7_p20	-0.057142857	0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	79	0	0	NA	17qA3.3	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	0.934520019	sgMsh2	cell line
chr17	19812337	19812337	C	A	ENSMUST00000172203.1	5	ENSMUSG00000091771	missense	T/N	791	Vmn2r103	ENSMUST00000172203.1:c.2372C>A	ENSMUSP00000126756.1:p.Thr791Asn	H-2-Db	9	7	5	CVWVNFLPV	CVWVTFLPV	SMM	162.787	7899.871	48.529	377	0.279	365.39	9389.201	25.696	10878.53	567.26	12089.5	717.2	7899.871007	162.7871051	7154.346992	163.5196692	M7_p20	1.285714286	1.871428571	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.281	377	0	0	NA	17qA3.2	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr17	38305350	38305350	A	G	ENSMUST00000213505.1	5	ENSMUSG00000054940	missense	M/T	37	Olfr137	ENSMUST00000213505.1:c.110T>C	ENSMUSP00000150173.1:p.Met37Thr	H-2-Kb	8	5	7	VILIFYTM	VILIFYMM	NetMHC	12.13	9.97	0.822	205	0.302	29.542	31.132	1.054	9.97	12.13	64.9	28.2	27.21071791	30.88445912	35.05419514	39.33145385	M7_p20	2.214285714	2.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.322	205	0	0	NA	17qB1	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr17	38305350	38305350	A	G	ENSMUST00000213505.1	5	ENSMUSG00000054940	missense	M/T	37	Olfr137	ENSMUST00000213505.1:c.110T>C	ENSMUSP00000150173.1:p.Met37Thr	H-2-Kb	8	8	4	IFYTMTLM	IFYMMTLM	NetMHC	61.09	51.23	0.839	205	0.302	94.841	92.954	0.98	51.23	61.09	70.1	82.1	124.9510759	107.5820957	115.8083836	119.0529058	M7_p20	1.1	1.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.322	205	0	0	NA	17qB1	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr17	19812337	19812337	C	A	ENSMUST00000172203.1	5	ENSMUSG00000091771	missense	T/N	791	Vmn2r103	ENSMUST00000172203.1:c.2372C>A	ENSMUSP00000126756.1:p.Thr791Asn	H-2-Kb	8	8	4	VWVNFLPV	VWVTFLPV	NetMHC	75.65	99.44	1.314	377	0.279	162.833	141.568	0.869	99.44	75.65	190.6	182	146.1302072	162.4575876	137.0061303	163.2074578	M7_p20	1.285714286	1.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.281	377	0	0	NA	17qA3.2	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr17	18277423	18277423	T	A	ENSMUST00000172190.3	5	ENSMUSG00000090417	missense	D/V	29	Vmn2r94	ENSMUST00000172190.3:c.86A>T	ENSMUSP00000126386.2:p.Asp29Val	H-2-Kb	8	11	1	VNYVQYNF	DNYVQYNF	NetMHCpan	60.6	3963.3	65.401	259	0.263	102.319	3678.76	35.954	5001.49	77.07	3963.3	60.6	2258.083514	127.5674869	3394.220093	183.9670312	M7_p20	-0.871428571	-0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.264	259	0	0	NA	17qA3.2	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr17	38305350	38305350	A	G	ENSMUST00000213505.1	5	ENSMUSG00000054940	missense	M/T	37	Olfr137	ENSMUST00000213505.1:c.110T>C	ENSMUSP00000150173.1:p.Met37Thr	H-2-Kb	8	7	5	LIFYTMTL	LIFYMMTL	NetMHCpan	77.2	52.6	0.681	205	0.302	222.743	93.328	0.419	65.39	165.11	52.6	77.2	122.3883275	309.5565516	121.2662646	280.3754606	M7_p20	1.471428571	1.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.322	205	0	0	NA	17qB1	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr16	64926197	64926197	G	A	ENSMUST00000063076.5	1	ENSMUSG00000050783	missense	S/F	244	Htr1f	ENSMUST00000063076.5:c.731C>T	ENSMUSP00000063136.4:p.Ser244Phe	H-2-Kb	8	7	5	LVSTFYML	LVSTSYML	NetMHCpan	110.1	3406	30.936	177	0.181	233.792	5453.403	23.326	4857.02	174.67	3406	110.1	6049.785825	318.2291802	6349.506908	292.9139126	M7_p20	1.414285714	1.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.174	177	0	0	NA	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	0.813032416	sgMsh2	cell line
chr16	63773391	63773391	C	CA	ENSMUST00000064405.7	1	ENSMUSG00000052504	FS	L/FX	111	Epha3	ENSMUST00000064405.7:c.332dup	ENSMUSP00000066554.6:p.Leu111PhefsTer11	H-2-Kb	8	9	3	IPFGFGDL	NA	SMMPMBEC	51.968	NA	NA	80	0.225	131.126	NA	NA	NA	209.44	NA	512	NA	52.8128981	NA	51.96847826	M7_p20	0.5	0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.206	80	0	0	NA	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	0.962555619	sgMsh2	cell line
chr16	85899765	85899765	T	G	ENSMUST00000023611.6	1	ENSMUSG00000022894	missense	K/T	168	Adamts5	ENSMUST00000023611.6:c.503A>C	ENSMUSP00000023611.5:p.Lys168Thr	H-2-Kb	8	6	6	ARYTLTPL	ARYTLKPL	SMMPMBEC	216.641	397.869	1.837	82	0.305	237.11	719.543	3.035	991.64	248.93	1750.2	575.9	447.4453509	225.2890066	397.8689062	216.6406749	M7_p20	-0.171428571	-0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.321	82	0	0	NA	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr17	13888945	13888945	A	G	ENSMUST00000139666.7	2	ENSMUSG00000068036	missense	M/V	1592	Afdn	ENSMUST00000139666.7:c.4774A>G	ENSMUSP00000118318.1:p.Met1592Val	H-2-Kb	8	7	5	TMLIVQRL	TMLIMQRL	NetMHCpan	274.8	120.7	0.439	197	0.259	415.108	263.019	0.634	177.91	359.52	120.7	274.8	348.1288376	470.6954498	373.0267702	558.1359543	M7_p20	1.457142857	1.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.24	197	0	0	NA	17qA1	chr17-3079405-14988397	4	3	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr17	25883786	25883786	C	T	ENSMUST00000167626.7	1	ENSMUSG00000025730	missense	G/S	230	Rab40c	ENSMUST00000167626.7:c.688G>A	ENSMUSP00000127546.1:p.Gly230Ser	H-2-Kb	8	4	8	KSFSMANS	KSFSMANG	SMM	98.116	103.214	1.052	79	0.19	451.96	949.348	2.101	1766.95	771.87	2713.8	1479.8	103.2143305	98.11603738	131.7467771	132.0504848	M7_p20	0.085714286	0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	79	0	0	NA	17qA3.3	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	0.934520019	sgMsh2	cell line
chr17	20540614	20540614	G	T	ENSMUST00000167093.2	5	ENSMUSG00000090572	missense	P/H	827	Vmn2r109	ENSMUST00000167093.2:c.2480C>A	ENSMUSP00000132641.1:p.Pro827His	H-2-Kb	8	5	7	LGFIFAHK	LGFIFAPK	SMMPMBEC	60.22	40.902	0.679	251	0.287	399.253	288.671	0.723	784.23	932.66	508.2	692.4	69.1416915	106.106014	40.90157201	60.21989584	M7_p20	0.628571429	1.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.284	251	0	0	NA	17qA3.2	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr17	38305350	38305350	A	G	ENSMUST00000213505.1	5	ENSMUSG00000054940	missense	M/T	37	Olfr137	ENSMUST00000213505.1:c.110T>C	ENSMUSP00000150173.1:p.Met37Thr	H-2-Kb	9	5	7	VILIFYTMT	VILIFYMMT	NetMHC	79.78	86.29	1.082	205	0.302	86.781	92.419	1.065	86.29	79.78	1117.9	409.6	94.21281926	91.85652252	90.62541326	81.70525693	M7_p20	1.471428571	2.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.322	205	0	0	NA	17qB1	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr17	19812337	19812337	C	A	ENSMUST00000172203.1	5	ENSMUSG00000091771	missense	T/N	791	Vmn2r103	ENSMUST00000172203.1:c.2372C>A	ENSMUSP00000126756.1:p.Thr791Asn	H-2-Kb	9	8	4	VWVNFLPVF	VWVTFLPVF	SMM	97.524	101.184	1.038	377	0.279	160.102	200.409	1.252	253.84	177.89	795.3	731	101.1835704	97.52366186	146.9772103	142.3147781	M7_p20	1.814285714	1.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.281	377	0	0	NA	17qA3.2	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr16	91686273	91686273	G	A	ENSMUST00000159295.7	5	ENSMUSG00000116933	missense	S/F	114	Atp5o	ENSMUST00000159295.7:c.341C>T	ENSMUSP00000125172.1:p.Ser114Phe	H-2-Kb	9	7	5	LLFTFSQPF	LLFTSSQPF	NetMHCpan	88.2	1017.1	11.532	30	0.233	254.62	1544.896	6.067	1486.14	195.11	1017.1	88.2	1603.651519	314.1304236	1641.534444	347.7362769	M7_p20	0.257142857	1.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.26	30	0	0	NA	16qC4	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr17	25883786	25883786	C	T	ENSMUST00000167626.7	1	ENSMUSG00000025730	missense	G/S	230	Rab40c	ENSMUST00000167626.7:c.688G>A	ENSMUSP00000127546.1:p.Gly230Ser	H-2-Kb	9	4	8	KSFSMANSM	KSFSMANGM	NetMHCpan	186.2	177.2	0.952	79	0.19	228.187	202.909	0.889	169.03	199.86	177.2	186.2	228.6177783	256.5133662	445.9128626	453.1583638	M7_p20	0.471428571	0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	79	0	0	NA	17qA3.3	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	0.934520019	sgMsh2	cell line
chr17	38305350	38305350	A	G	ENSMUST00000213505.1	5	ENSMUSG00000054940	missense	M/T	37	Olfr137	ENSMUST00000213505.1:c.110T>C	ENSMUSP00000150173.1:p.Met37Thr	H-2-Kb	9	7	5	LIFYTMTLM	LIFYMMTLM	NetMHC	215.29	162.63	0.755	205	0.302	293.156	155.313	0.53	162.63	215.29	313.4	411.4	134.3105106	256.5133662	147.9960077	329.7995054	M7_p20	1.1	1.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.322	205	0	0	NA	17qB1	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr17	19812337	19812337	C	A	ENSMUST00000172203.1	5	ENSMUSG00000091771	missense	T/N	791	Vmn2r103	ENSMUST00000172203.1:c.2372C>A	ENSMUSP00000126756.1:p.Thr791Asn	H-2-Kb	9	7	5	CVWVNFLPV	CVWVTFLPV	NetMHC	225.74	335.96	1.488	377	0.279	373.645	454.543	1.217	335.96	225.74	1083.8	583.7	309.8203926	301.3769268	573.1258538	445.9128626	M7_p20	1.285714286	1.871428571	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.281	377	0	0	NA	17qA3.2	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr17	38305350	38305350	A	G	ENSMUST00000213505.1	5	ENSMUSG00000054940	missense	M/T	37	Olfr137	ENSMUST00000213505.1:c.110T>C	ENSMUSP00000150173.1:p.Met37Thr	H-2-Kb	9	4	8	VVILIFYTM	VVILIFYMM	SMM	173.824	150.699	0.867	205	0.302	226.805	198.292	0.874	208.11	225.97	719.4	301.4	150.6988715	173.8241042	188.4733717	227.6407459	M7_p20	2.214285714	3.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.322	205	0	0	NA	17qB1	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr17	56632320	56632320	T	G	ENSMUST00000112979.3	1	ENSMUSG00000040828	missense	F/V	50	Catsperd	ENSMUST00000112979.3:c.148T>G	ENSMUSP00000108603.2:p.Phe50Val	H-2-Kb	9	3	9	LFYAFPNTV	LFYAFPNTF	NetMHCpan	233	338.6	1.453	227	0.238	281.738	333.442	1.184	338.69	258.61	338.6	233	228.6177783	304.8667072	328.2842143	424.864065	M7_p20	0.242857143	0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.237	227	0	0	NA	17qD	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr16	64926197	64926197	G	A	ENSMUST00000063076.5	1	ENSMUSG00000050783	missense	S/F	244	Htr1f	ENSMUST00000063076.5:c.731C>T	ENSMUSP00000063136.4:p.Ser244Phe	H-2-Kb	9	10	2	TFYMLEKSL	TSYMLEKSL	NetMHCpan	295.4	99.7	0.338	177	0.181	314.513	130.789	0.416	100.05	304.5	99.7	295.4	180.3474475	333.5108752	161.5288124	324.526376	M7_p20	-1.27E-16	-1.27E-16	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.174	177	0	0	NA	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	0.813032416	sgMsh2	cell line
chr16	90475960	90475960	A	G	ENSMUST00000065856.7	1	ENSMUSG00000053414	missense	K/R	384	Hunk	ENSMUST00000065856.7:c.1151A>G	ENSMUSP00000068007.6:p.Lys384Arg	H-2-Kb	9	4	8	IYFLLNKRL	IYFLLNKKL	NetMHCpan	173.2	323.5	1.868	21	0.238	293.373	494.155	1.684	566.37	307.33	323.5	173.2	591.7114865	324.4217779	421.9393213	279.4151821	M7_p20	0.328571429	0.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.3	21	0	0	NA	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr17	38305350	38305350	A	G	ENSMUST00000213505.1	5	ENSMUSG00000054940	missense	M/T	37	Olfr137	ENSMUST00000213505.1:c.110T>C	ENSMUSP00000150173.1:p.Met37Thr	H-2-Kb	9	6	6	ILIFYTMTL	ILIFYMMTL	NetMHCpan	60.7	89.5	1.474	205	0.302	361.349	236.617	0.655	185.99	316.02	89.5	60.7	410.3080144	503.6281538	287.2433612	406.6773641	M7_p20	1.471428571	2.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.322	205	0	0	NA	17qB1	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr17	19812337	19812337	C	A	ENSMUST00000172203.1	5	ENSMUSG00000091771	missense	T/N	791	Vmn2r103	ENSMUST00000172203.1:c.2372C>A	ENSMUSP00000126756.1:p.Thr791Asn	H-2-Kb	9	4	8	VFFCVWVNF	VFFCVWVTF	SMMPMBEC	208.089	249.029	1.197	377	0.279	303.189	414.473	1.367	540.47	364.77	2015	1419.2	288.4762076	241.607271	249.0290432	208.0894201	M7_p20	1.728571429	2.828571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.281	377	0	0	NA	17qA3.2	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr18	37680939	37680939	G	T	ENSMUST00000192931.1	1	ENSMUSG00000103037	missense	S/I	161	Pcdhgb1	ENSMUST00000192931.1:c.482G>T	ENSMUSP00000141348.1:p.Ser161Ile	H-2-Db	9	3	9	NSLKMYTVI	NSLKMYTVS	NetMHC	158.89	19903.22	125.264	212	0.443	356.594	9153.28	25.669	19903.22	158.89	14990.9	524.3	2996.539453	391.3992598	3315.660076	321.7881152	M7_p20	1.214285714	1.214285714	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.466	212	0	0	NA	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr18	37682066	37682066	C	T	ENSMUST00000192931.1	1	ENSMUSG00000103037	missense	R/C	537	Pcdhgb1	ENSMUST00000192931.1:c.1609C>T	ENSMUSP00000141348.1:p.Arg537Cys	H-2-Db	9	5	7	SANVSMCVL	SANVSMRVL	NetMHC	171.74	1581.12	9.206	237	0.232	415.556	1188.246	2.859	1581.12	171.74	2975.5	608.3	680.1739581	450.4224204	795.3714539	380.6887124	M7_p20	1.757142857	1.757142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.222	237	0	0	NA	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr17	78934740	78934740	G	A	ENSMUST00000024885.9	1	ENSMUSG00000024081	missense	P/L	495	Cebpz	ENSMUST00000024885.9:c.1484C>T	ENSMUSP00000024885.8:p.Pro495Leu	H-2-Db	9	3	9	LTGVNRAYL	LTGVNRAYP	NetMHC	219.87	18677.21	84.947	165	0.2	301.794	8814.504	29.207	18677.21	219.87	13900.2	363.9	3661.170885	308.7592661	3728.807814	294.8288646	M7_p20	0.014285714	0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.218	165	0	0	NA	17qE3	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr18	35581231	35581231	T	C	ENSMUST00000166793.9	1	ENSMUSG00000037236	missense	L/P	415	Matr3	ENSMUST00000166793.9:c.1244T>C	ENSMUSP00000125761.1:p.Leu415Pro	H-2-Kb	8	5	7	KNLRYQPL	KNLRYQLL	NetMHC	6.46	13.63	2.11	98	0.235	19.213	38.593	2.009	13.63	6.46	21.5	17.4	55.68522772	21.02519343	72.06759014	26.16616044	M7_p20	-0.971428571	-0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.234	98	0	0	NA	18qB2	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr17	78934740	78934740	G	A	ENSMUST00000024885.9	1	ENSMUSG00000024081	missense	P/L	495	Cebpz	ENSMUST00000024885.9:c.1484C>T	ENSMUSP00000024885.8:p.Pro495Leu	H-2-Kb	8	8	4	RAYLYSQI	RAYPYSQI	NetMHC	6.83	14.98	2.193	165	0.2	27.013	58.558	2.168	14.98	6.83	23.2	10.9	93.91608928	49.28786429	99.0238939	43.12608157	M7_p20	0.457142857	0.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.218	165	0	0	NA	17qE3	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr18	37663395	37663395	A	G	ENSMUST00000194190.1	1	ENSMUSG00000103144	missense	N/S	484	Pcdhga1	ENSMUST00000194190.1:c.1451A>G	ENSMUSP00000142062.1:p.Asn484Ser	H-2-Kb	8	11	1	SALVTYAL	NALVTYAL	NetMHC	31.57	1072.26	33.965	101	0.218	243.894	1874.303	7.685	1072.26	31.57	1582.2	146.8	2166.406749	340.9887101	2186.452264	385.2476516	M7_p20	1.914285714	1.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.242	101	0	0	NA	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr17	88635346	88635346	AC	A	ENSMUST00000064035.12	2	ENSMUSG00000033855	FS	T/X	60	Ston1	ENSMUST00000064035.12:c.184del	ENSMUSP00000067027.6:p.Leu62CysfsTer155	H-2-Kb	8	137	0	VALPRSPL	NA	NetMHC	91.85	NA	NA	27	0.222	178.821	NA	NA	NA	91.85	NA	120.1	NA	237.5417764	NA	281.6696149	M7_p20	0.128571429	0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2222	27	0	0	NA	17qE4	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr18	37739233	37739233	T	C	ENSMUST00000091935.6	1	ENSMUSG00000102440	missense	L/P	705	Pcdhga9	ENSMUST00000091935.6:c.2114T>C	ENSMUSP00000089555.4:p.Leu705Pro	H-2-Kb	8	6	6	VSCVFPLF	VSCVFLLF	NetMHC	164.2	353.77	2.155	158	0.19	192.462	304.15	1.58	353.77	164.2	442.6	218.3	254.5305993	225.2890066	183.1217795	166.6249377	M7_p20	1.957142857	2.157142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.19	158	0	0	NA	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	0.887794018	sgMsh2	cell line
chr18	37739233	37739233	T	C	ENSMUST00000091935.6	1	ENSMUSG00000102440	missense	L/P	705	Pcdhga9	ENSMUST00000091935.6:c.2114T>C	ENSMUSP00000089555.4:p.Leu705Pro	H-2-Kb	8	9	3	VFPLFVLV	VFLLFVLV	SMM	103.93	44.334	0.427	158	0.19	157.501	105.609	0.671	157.3	176.41	885.9	444.7	44.33431473	103.9297781	53.91877292	138.5925865	M7_p20	2.857142857	2.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.19	158	0	0	NA	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	0.887794018	sgMsh2	cell line
chr17	88635346	88635346	AC	A	ENSMUST00000064035.12	2	ENSMUSG00000033855	FS	T/X	60	Ston1	ENSMUST00000064035.12:c.184del	ENSMUSP00000067027.6:p.Leu62CysfsTer155	H-2-Kb	8	91	0	ATPTLSPL	NA	NetMHC	192.35	NA	NA	27	0.222	286.809	NA	NA	NA	192.35	NA	353.4	NA	275.2580317	NA	298.3595888	M7_p20	0.314285714	0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2222	27	0	0	NA	17qE4	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr17	88635346	88635346	AC	A	ENSMUST00000064035.12	2	ENSMUSG00000033855	FS	T/X	60	Ston1	ENSMUST00000064035.12:c.184del	ENSMUSP00000067027.6:p.Leu62CysfsTer155	H-2-Kb	8	118	0	SSNIFRTI	NA	SMM	189.121	NA	NA	27	0.222	211.601	NA	NA	NA	219.62	NA	223.5	NA	189.1211064	NA	203.5822922	M7_p20	0.328571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2222	27	0	0	NA	17qE4	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr18	34425065	34425065	T	C	ENSMUST00000014647.8	1	ENSMUSG00000014503	missense	F/L	266	Pkd2l2	ENSMUST00000014647.8:c.796T>C	ENSMUSP00000014647.7:p.Phe266Leu	H-2-Kb	8	7	5	TSWQLYSV	TSWQFYSV	NetMHCpan	224.1	15.8	0.071	135	0.252	243.655	18.534	0.076	8.36	286.6	15.8	224.1	24.70244836	260.4593785	21.2686537	226.8506354	M7_p20	0.1	0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.274	135	0	0	NA	18qB1	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr17	80629329	80629329	GA	G	ENSMUST00000025089.8	5	ENSMUSG00000024242	FS	F/X	359	Map4k3	ENSMUST00000025089.8:c.1076del	ENSMUSP00000025089.7:p.Phe359SerfsTer19	H-2-Kb	8	13	0	VQKKYTTL	NA	SMMPMBEC	225.808	NA	NA	141	0.277	237.92	NA	NA	NA	317.66	NA	236.1	NA	239.7397234	NA	225.8083514	M7_p20	-1.457142857	-1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.289	141	0	0	NA	17qE3	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr17	88635346	88635346	AC	A	ENSMUST00000064035.12	2	ENSMUSG00000033855	FS	T/X	60	Ston1	ENSMUST00000064035.12:c.184del	ENSMUSP00000067027.6:p.Leu62CysfsTer155	H-2-Kb	8	71	0	WVPHYYLL	NA	SMMPMBEC	249.885	NA	NA	27	0.222	283.87	NA	NA	NA	334.69	NA	300.6	NA	267.1406633	NA	249.8848923	M7_p20	0.628571429	0.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2222	27	0	0	NA	17qE4	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr17	86168897	86168897	T	A	ENSMUST00000097275.8	1	ENSMUSG00000045038	missense	F/Y	102	Prkce	ENSMUST00000097275.8:c.305T>A	ENSMUSP00000094874.2:p.Phe102Tyr	H-2-Kb	8	7	5	CTIQYEEL	CTIQFEEL	NetMHCpan	215.2	148.3	0.689	35	0.286	326.052	254.206	0.78	274.13	397.36	148.3	215.2	234.2825811	287.5676312	296.9887511	364.5356443	M7_p20	-0.6	-0.6	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.32	35	0	0	NA	17qE4	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr18	25140584	25140584	T	C	ENSMUST00000115817.2	1	ENSMUSG00000024269	missense	I/M	173	Tpgs2	ENSMUST00000115817.2:c.519A>G	ENSMUSP00000111484.2:p.Ile173Met	H-2-Kb	8	11	1	MWFLDRAL	IWFLDRAL	SMMPMBEC	337.863	155.503	0.46	288	0.25	407.23	165.595	0.407	151.42	463.11	556.2	1039.1	175.6871509	351.3500341	155.5034397	337.8625068	M7_p20	0.471428571	0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.262	288	0	0	NA	18qA2	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr18	37739233	37739233	T	C	ENSMUST00000091935.6	1	ENSMUSG00000102440	missense	L/P	705	Pcdhga9	ENSMUST00000091935.6:c.2114T>C	ENSMUSP00000089555.4:p.Leu705Pro	H-2-Kb	8	8	4	CVFPLFVL	CVFLLFVL	NetMHCpan	243.4	1101.6	4.526	158	0.19	494.132	369.749	0.748	484.38	740.75	1101.6	243.4	211.2224132	402.476011	255.1173529	585.787365	M7_p20	2.857142857	2.857142857	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.19	158	0	0	NA	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	0.887794018	sgMsh2	cell line
chr17	87975164	87975164	A	G	ENSMUST00000005503.4	1	ENSMUSG00000005370	missense	T/A	6	Msh6	ENSMUST00000005503.4:c.16A>G	ENSMUSP00000005503.3:p.Thr6Ala	H-2-Kb	8	6	1	ALYSFFPK	TLYSFFPK	SMMPMBEC	123.521	96.993	0.785	27	0.296	434.214	324.28	0.747	2664.03	2996.78	489.8	668.1	158.7596015	200.3272365	96.99291239	123.5207728	M7_p20	0.257142857	1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.313	27	0	0	NA	17qE4	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr18	37663395	37663395	A	G	ENSMUST00000194190.1	1	ENSMUSG00000103144	missense	N/S	484	Pcdhga1	ENSMUST00000194190.1:c.1451A>G	ENSMUSP00000142062.1:p.Asn484Ser	H-2-Kb	9	11	1	SALVTYALV	NALVTYALV	NetMHC	23.19	341.47	14.725	101	0.218	127.027	710.619	5.594	341.47	23.19	836.3	118.5	584.9382211	135.5532704	883.5883884	220.4194935	M7_p20	2.257142857	2.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.242	101	0	0	NA	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr18	36535583	36535583	G	A	ENSMUST00000237174.1	NA	ENSMUSG00000024485	missense	A/T	739	Slc4a9	ENSMUST00000237174.1:c.2215G>A	ENSMUSP00000158071.1:p.Ala739Thr	H-2-Kb	9	4	8	VLMLFTSTL	VLMLFTSAL	NetMHCpan	23.3	29.1	1.249	157	0.287	123.563	112.771	0.913	49.3	60.01	29.1	23.3	176.2422384	187.1156015	210.0148478	226.073678	M7_p20	1.442857143	2.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.302	157	0	0	NA	18qB2	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr17	88635346	88635346	AC	A	ENSMUST00000064035.12	2	ENSMUSG00000033855	FS	T/X	60	Ston1	ENSMUST00000064035.12:c.184del	ENSMUSP00000067027.6:p.Leu62CysfsTer155	H-2-Kb	9	127	0	LSPTHFGKM	NA	NetMHC	86.5	NA	NA	27	0.222	150.318	NA	NA	NA	86.5	NA	87.7	NA	321.4474612	NA	212.9364454	M7_p20	-0.728571429	-0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2222	27	0	0	NA	17qE4	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr17	80629329	80629329	GA	G	ENSMUST00000025089.8	5	ENSMUSG00000024242	FS	F/X	359	Map4k3	ENSMUST00000025089.8:c.1076del	ENSMUSP00000025089.7:p.Phe359SerfsTer19	H-2-Kb	9	12	0	TVQKKYTTL	NA	NetMHC	100.92	NA	NA	141	0.277	215.238	NA	NA	NA	100.92	NA	177.4	NA	283.2109234	NA	253.0754397	M7_p20	-1.457142857	-1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.289	141	0	0	NA	17qE3	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr17	80368242	80368242	A	G	ENSMUST00000068175.5	5	ENSMUSG00000054901	missense	I/V	407	Arhgef33	ENSMUST00000068175.5:c.1219A>G	ENSMUSP00000063284.5:p.Ile407Val	H-2-Kb	9	10	2	RVPEYLIHL	RIPEYLIHL	NetMHCpan	71.4	83.4	1.168	226	0.274	293.292	299.158	1.02	102.74	106.73	83.4	71.4	495.5756965	479.854973	611.2938126	600.1364431	M7_p20	0.357142857	0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.288	226	0	0	NA	17qE3	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr18	14670358	14670358	A	G	ENSMUST00000040924.8	1	ENSMUSG00000037013	missense	L/P	61	Ss18	ENSMUST00000040924.8:c.182T>C	ENSMUSP00000046320.7:p.Leu61Pro	H-2-Kb	9	6	6	TNLVYPATI	TNLVYLATI	NetMHCpan	106.8	32.3	0.302	121	0.207	310.497	121.806	0.392	46.71	150.83	32.3	106.8	206.1151905	485.4114317	196.9019422	470.1646793	M7_p20	1.528571429	1.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.201	121	0	0	NA	18qA1	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	0.939192619	sgMsh2	cell line
chr18	34425065	34425065	T	C	ENSMUST00000014647.8	1	ENSMUSG00000014503	missense	F/L	266	Pkd2l2	ENSMUST00000014647.8:c.796T>C	ENSMUSP00000014647.7:p.Phe266Leu	H-2-Kb	9	8	4	SWQLYSVKL	SWQFYSVKL	NetMHC	179.84	220.95	1.229	135	0.252	295.887	262.711	0.888	220.95	179.84	256.2	341.1	269.2216614	250.6744092	353.3865369	371.7491635	M7_p20	0.328571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.274	135	0	0	NA	18qB1	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr18	37680939	37680939	G	T	ENSMUST00000192931.1	1	ENSMUSG00000103037	missense	S/I	161	Pcdhgb1	ENSMUST00000192931.1:c.482G>T	ENSMUSP00000141348.1:p.Ser161Ile	H-2-Kb	9	10	2	VIPNPHFSL	VSPNPHFSL	NetMHC	211.65	119.37	0.564	212	0.443	410.119	267.215	0.652	119.37	211.65	107.8	235.3	415.0591573	584.9382211	522.696991	774.9077422	M7_p20	-0.585714286	0.228571429	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.466	212	0	0	NA	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr17	90565439	90565439	T	C	ENSMUST00000160844.9	1	ENSMUSG00000024109	missense	K/R	1037	Nrxn1	ENSMUST00000160844.9:c.3110A>G	ENSMUSP00000125407.3:p.Lys1037Arg	H-2-Kb	9	5	7	VAKETYRSL	VAKETYKSL	NetMHC	218.48	466.37	2.135	97	0.299	304.871	413.163	1.355	466.37	218.48	516.5	312.5	331.9785319	297.2418804	359.9564831	350.9538411	M7_p20	-1.557142857	-1.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.262	97	0	0	NA	17qE5	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr17	88635346	88635346	AC	A	ENSMUST00000064035.12	2	ENSMUSG00000033855	FS	T/X	60	Ston1	ENSMUST00000064035.12:c.184del	ENSMUSP00000067027.6:p.Leu62CysfsTer155	H-2-Kb	9	90	0	VATPTLSPL	NA	NetMHC	312.28	NA	NA	27	0.222	386.535	NA	NA	NA	312.28	NA	453.1	NA	319.9705442	NA	504.9518876	M7_p20	0.314285714	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2222	27	0	0	NA	17qE4	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr17	87685530	87685530	T	C	ENSMUST00000024967.13	1	ENSMUSG00000024151	missense	F/L	296	Msh2	ENSMUST00000024967.13:c.886T>C	ENSMUSP00000024967.7:p.Phe296Leu	H-2-Kb	9	7	5	ATFDLSQYM	ATFDFSQYM	NetMHCpan	351.2	29.1	0.083	94	0.074	417.565	76.079	0.182	26.45	383.16	29.1	351.2	123.0580418	451.9704069	172.683165	562.6651281	M7_p20	-0.085714286	-0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.082	94	0	0	NA	17qE4	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	0.383153208	sgMsh2	cell line
chr18	37739233	37739233	T	C	ENSMUST00000091935.6	1	ENSMUSG00000102440	missense	L/P	705	Pcdhga9	ENSMUST00000091935.6:c.2114T>C	ENSMUSP00000089555.4:p.Leu705Pro	H-2-Kb	9	9	3	VFPLFVLVL	VFLLFVLVL	SMM	294.517	171.834	0.583	158	0.19	374.786	290.677	0.776	396.32	400.23	1256.5	447.8	171.8343562	294.5167504	185.033345	349.3413547	M7_p20	3	3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.19	158	0	0	NA	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	0.887794018	sgMsh2	cell line
chr17	88635346	88635346	AC	A	ENSMUST00000064035.12	2	ENSMUSG00000033855	FS	T/X	60	Ston1	ENSMUST00000064035.12:c.184del	ENSMUSP00000067027.6:p.Leu62CysfsTer155	H-2-Kb	9	52	0	CFILFQSVL	NA	SMM	343.645	NA	NA	27	0.222	482.676	NA	NA	NA	403.98	NA	734.2	NA	343.6449768	NA	561.3710342	M7_p20	2.114285714	2.114285714	TRUE	FALSE	FALSE	1	FALSE	0	Strelka2;Vardict	2	0.2222	27	0	0	NA	17qE4	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr17	88635346	88635346	AC	A	ENSMUST00000064035.12	2	ENSMUSG00000033855	FS	T/X	60	Ston1	ENSMUST00000064035.12:c.184del	ENSMUSP00000067027.6:p.Leu62CysfsTer155	H-2-Kb	9	119	0	SNIFRTIVL	NA	NetMHCpan	157.2	NA	NA	27	0.222	224.462	NA	NA	NA	444.48	NA	157.2	NA	239.3922023	NA	209.5318271	M7_p20	2.085714286	2.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2222	27	0	0	NA	17qE4	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr17	88635346	88635346	AC	A	ENSMUST00000064035.12	2	ENSMUSG00000033855	FS	T/X	60	Ston1	ENSMUST00000064035.12:c.184del	ENSMUSP00000067027.6:p.Leu62CysfsTer155	H-2-Kb	9	101	0	SVLQKTLAL	NA	NetMHCpan	446.3	NA	NA	27	0.222	477.108	NA	NA	NA	458.64	NA	446.3	NA	495.5756965	NA	529.9684305	M7_p20	0.728571429	0.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2222	27	0	0	NA	17qE4	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr18	37739233	37739233	T	C	ENSMUST00000091935.6	1	ENSMUSG00000102440	missense	L/P	705	Pcdhga9	ENSMUST00000091935.6:c.2114T>C	ENSMUSP00000089555.4:p.Leu705Pro	H-2-Kb	9	8	4	CVFPLFVLV	CVFLLFVLV	SMM	237.744	141.29	0.594	158	0.19	403.989	292.827	0.725	374.67	461.84	2710.8	481.3	141.2895364	237.7442379	210.9842323	346.1385739	M7_p20	2.857142857	2.857142857	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.19	158	0	0	NA	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	0.887794018	sgMsh2	cell line
chr18	36682671	36682671	A	G	ENSMUST00000186538.6	1	ENSMUSG00000033272	missense	T/A	185	Slc35a4	ENSMUST00000186538.6:c.553A>G	ENSMUSP00000140615.1:p.Thr185Ala	H-2-Kb	9	5	7	PMPLHIAPL	PMPLHITPL	SMM	168.31	224.962	1.337	96	0.302	450.843	810.497	1.798	1310.36	673.52	1998.7	1361.6	224.9624328	168.310031	310.6347231	228.165512	M7_p20	1.071428571	1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.317	96	0	0	NA	18qB2	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr17	87975164	87975164	A	G	ENSMUST00000005503.4	1	ENSMUSG00000005370	missense	T/A	6	Msh6	ENSMUST00000005503.4:c.16A>G	ENSMUSP00000005503.3:p.Thr6Ala	H-2-Kb	9	6	1	ALYSFFPKS	TLYSFFPKS	SMM	199.118	169.087	0.849	27	0.296	301.833	222.371	0.737	677.07	808.78	202.5	298.7	169.0869148	199.1177609	242.2423104	304.9650004	M7_p20	-0.4	1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.313	27	0	0	NA	17qE4	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr19	5039797	5039797	A	C	ENSMUST00000053705.7	1	ENSMUSG00000047379	missense	E/A	274	B4gat1	ENSMUST00000053705.7:c.821A>C	ENSMUSP00000062016.6:p.Glu274Ala	H-2-Db	9	4	8	RMPMNKNAL	RMPMNKNEL	NetMHC	50.14	42.91	0.856	74	0.351	214.93	180.764	0.841	42.91	50.14	148.9	201	212.6277776	236.9299703	214.5704935	228.8600561	M7_p20	-0.714285714	-0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.327	74	0	0	NA	19qA	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	sgMsh2	cell line
chr19	34524751	34524751	A	G	ENSMUST00000049572.14	1	ENSMUSG00000024781	missense	V/A	31	Lipa	ENSMUST00000049572.14:c.92T>C	ENSMUSP00000053270.8:p.Val31Ala	H-2-Db	9	10	2	EANMNVTEI	EVNMNVTEI	NetMHC	98.64	3377.74	34.243	287	0.16	128.966	1339.107	10.383	3377.74	98.64	1767	185.8	911.213195	142.4360758	737.1739842	115.4968129	M7_p20	-0.085714286	-0.085714286	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.167	287	0	0	NA	19qC1	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.780324215	sgMsh2	cell line
chr19	5098235	5098235	T	C	ENSMUST00000025805.7	1	ENSMUSG00000024873	missense	Y/C	10	Cnih2	ENSMUST00000025805.7:c.29A>G	ENSMUSP00000025805.6:p.Tyr10Cys	H-2-Db	9	6	5	AAFCCMLTL	AAFCYMLTL	SMMPMBEC	440.119	894.479	2.032	17	0.176	494.788	867.569	1.753	1600.52	609.92	660.3	527.6	840.6592577	461.9766231	894.4786932	440.1188809	M7_p20	2.371428571	2.442857143	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.233	17	0	0	NA	19qA	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	sgMsh2	cell line
chr19	25171612	25171612	A	G	ENSMUST00000025831.7	1	ENSMUSG00000052085	missense	T/A	1485	Dock8	ENSMUST00000025831.7:c.4453A>G	ENSMUSP00000025831.6:p.Thr1485Ala	H-2-Kb	8	5	7	LTHCFAAL	LTHCFATL	NetMHC	13.46	20.98	1.559	121	0.289	24.126	31.465	1.304	20.98	13.46	18.6	21.6	49.28786429	29.63056959	41.95077612	26.65262568	M7_p20	1.257142857	1.257142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.287	121	0	0	NA	19qB	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr19	25409764	25409764	T	C	ENSMUST00000049400.14	5	ENSMUSG00000032702	missense	V/A	239	Kank1	ENSMUST00000049400.14:c.716T>C	ENSMUSP00000042177.8:p.Val239Ala	H-2-Kb	8	9	3	SSARHSPL	SSVRHSPL	NetMHC	29.15	10.11	0.347	144	0.076	49.084	28.486	0.58	10.11	29.15	53.9	118.6	27.27344509	40.52658414	29.69887511	57.64212727	M7_p20	-0.757142857	-0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.088	144	0	0	NA	19qB	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.411188808	sgMsh2	cell line
chr18	87756730	87756730	C	G	ENSMUST00000091776.6	NA	ENSMUSG00000069324	missense	P/A	126	Gm5096	ENSMUST00000091776.6:c.376C>G	ENSMUSP00000135956.1:p.Pro126Ala	H-2-Kb	8	7	5	VSQTASYL	VSQTPSYL	SMM	109.582	165.859	1.514	361	0.258	131.957	250.56	1.899	264.67	114.38	836.3	352.8	165.8593656	109.5821962	236.4503711	149.534017	M7_p20	-0.214285714	-0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.261	361	0	0	NA	18qE4	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr19	24272399	24272399	T	G	ENSMUST00000081333.10	1	ENSMUSG00000059363	missense	E/A	108	Fxn	ENSMUST00000081333.10:c.323A>C	ENSMUSP00000080081.4:p.Glu108Ala	H-2-Kb	8	6	6	LAEFFADL	LAEFFEDL	NetMHCpan	173.2	1634.8	9.439	62	0.484	205.358	1938.669	9.44	2515.07	197.54	1634.8	173.2	2242.538976	321.1737185	1547.889663	213.1768301	M7_p20	0.857142857	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.488	62	0	0	NA	19qB	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	3	1	sgMsh2	cell line
chr19	16641572	16641572	TA	T	ENSMUST00000068156.7	2	ENSMUSG00000046230	FS	Y/X	2877	Vps13a	ENSMUST00000068156.7:c.8629del	ENSMUSP00000068716.6:p.Tyr2877MetfsTer20	H-2-Kb	8	6	6	VEAFFMNL	VEAFFYEP	SMM	63.495	8067.519	127.057	131	0.206	112.485	14589.95	129.706	20067.12	201.53	16997.3	128.2	8067.519058	63.49506908	12182.60042	96.76983488	M7_p20	0.871428571	0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.192	131	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.897139218	sgMsh2	cell line
chr19	34039172	34039172	A	G	ENSMUST00000054260.7	1	ENSMUSG00000024771	missense	S/G	267	Lipk	ENSMUST00000054260.7:c.799A>G	ENSMUSP00000053913.6:p.Ser267Gly	H-2-Kb	8	4	8	SNFLFSLG	SNFLFSLS	SMM	51.492	48.949	0.951	158	0.253	115.861	82.255	0.71	98.25	207.49	82.9	150.3	48.94856902	51.49202839	81.60936526	81.42166892	M7_p20	1.214285714	1.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.267	158	0	0	NA	19qC1	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr18	90524320	90524320	A	G	ENSMUST00000025515.6	1	ENSMUSG00000024614	missense	T/A	181	Tmx3	ENSMUST00000025515.6:c.541A>G	ENSMUSP00000025515.6:p.Thr181Ala	H-2-Kb	8	8	4	IVYAYFFS	IVYTYFFS	SMM	25.571	25.046	0.979	138	0.051	90.474	77.518	0.857	197.69	219.19	120.7	143.3	25.04609364	25.57054591	34.33523309	37.64783444	M7_p20	1.171428571	1.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.06	138	0	0	NA	18qE4	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	sgMsh2	cell line
chr19	5655062	5655062	A	G	ENSMUST00000071857.12	1	ENSMUSG00000056917	missense	F/L	502	Sipa1	ENSMUST00000071857.12:c.1504T>C	ENSMUSP00000073618.5:p.Phe502Leu	H-2-Kb	8	4	8	ANADFRAL	ANADFRAF	SMM	145.794	2369.954	16.255	70	0.229	201.668	2632.782	13.055	4044.23	265.27	1742.8	172.8	2369.954455	145.794117	2895.609548	230.5366617	M7_p20	-0.185714286	-0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.218	70	0	0	NA	19qA	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	sgMsh2	cell line
chr18	90524320	90524320	A	G	ENSMUST00000025515.6	1	ENSMUSG00000024614	missense	T/A	181	Tmx3	ENSMUST00000025515.6:c.541A>G	ENSMUSP00000025515.6:p.Thr181Ala	H-2-Kb	8	10	2	YAYFFSAS	YTYFFSAS	SMM	76.338	49.401	0.647	138	0.051	117.122	105.705	0.903	312.23	292.36	129.8	105.2	49.40148455	76.33786332	81.60936526	129.0446488	M7_p20	0.9	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.06	138	0	0	NA	18qE4	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	sgMsh2	cell line
chr19	11283780	11283780	AT	A	ENSMUST00000067673.12	1	ENSMUSG00000054523	FS	N/X	5	Ms4a5	ENSMUST00000067673.12:c.14del	ENSMUSP00000066960.6:p.Asn5MetfsTer46	H-2-Kb	8	13	0	CSLQRSPL	NA	SMM	273.363	NA	NA	352	0.179	308.753	NA	NA	NA	297.07	NA	328.4	NA	273.3631687	NA	320.4350395	M7_p20	-0.514285714	-0.514285714	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.179	352	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.836395417	sgMsh2	cell line
chr18	71809108	71809108	T	C	ENSMUST00000114943.10	1	ENSMUSG00000060534	missense	T/A	313	Dcc	ENSMUST00000114943.10:c.937A>G	ENSMUSP00000110593.3:p.Thr313Ala	H-2-Kb	8	10	2	VAYKNENI	VTYKNENI	NetMHCpan	320.3	236.4	0.738	222	0.234	471.961	302.046	0.64	613.98	579.87	236.4	320.3	313.8629122	484.9980584	290.2284617	458.9231861	M7_p20	-1.342857143	-1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.234	222	0	0	NA	18qE2	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr19	16383254	16383254	G	A	ENSMUST00000025541.5	1	ENSMUSG00000024639	missense	V/M	314	Gnaq	ENSMUST00000025541.5:c.940G>A	ENSMUSP00000025541.5:p.Val314Met	H-2-Kb	8	6	6	ILKMFMDL	ILKMFVDL	NetMHCpan	249.7	319.7	1.28	251	0.167	388.374	474.546	1.222	1460.9	633.96	319.7	249.7	595.3056439	459.9811133	353.7854762	316.7670499	M7_p20	0.971428571	1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.177	251	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.827050216	sgMsh2	cell line
chr19	13190834	13190834	C	A	ENSMUST00000208533.2	2	ENSMUSG00000094721	missense	P/T	56	Olfr1462	ENSMUST00000208533.2:c.166C>A	ENSMUSP00000147174.1:p.Pro56Thr	H-2-Kb	8	11	1	TMYIFLSN	PMYIFLSN	SMM	117.149	1379.558	11.776	380	0.182	283.529	5301.305	18.698	9738.78	674.75	8693.9	421.6	1379.558114	117.1493815	1908.710225	145.4587999	M7_p20	1.057142857	1.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.17	380	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.794342016	sgMsh2	cell line
chr19	13190834	13190834	C	A	ENSMUST00000208533.2	2	ENSMUSG00000094721	missense	P/T	56	Olfr1462	ENSMUST00000208533.2:c.166C>A	ENSMUSP00000147174.1:p.Pro56Thr	H-2-Kb	9	11	1	TMYIFLSNL	PMYIFLSNL	NetMHC	3.88	23.01	5.93	380	0.182	6.909	25.54	3.697	23.01	3.88	35.5	4.2	17.70557356	9.618558706	28.0704904	11.94675617	M7_p20	1.328571429	1.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.17	380	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.794342016	sgMsh2	cell line
chr19	6014449	6014449	T	C	ENSMUST00000025891.9	1	ENSMUSG00000024942	missense	T/A	7	Capn1	ENSMUST00000025891.9:c.19A>G	ENSMUSP00000025891.8:p.Thr7Ala	H-2-Kb	9	6	2	IAPVYCTGV	ITPVYCTGV	NetMHC	34.06	40.24	1.181	47	0.17	225.487	323.367	1.434	40.24	34.06	136.1	80.2	510.6343193	370.7746213	522.696991	404.8088513	M7_p20	0.985714286	1.342857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.187	47	0	0	NA	19qA	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	sgMsh2	cell line
chr18	90524320	90524320	A	G	ENSMUST00000025515.6	1	ENSMUSG00000024614	missense	T/A	181	Tmx3	ENSMUST00000025515.6:c.541A>G	ENSMUSP00000025515.6:p.Thr181Ala	H-2-Kb	9	8	4	IVYAYFFSA	IVYTYFFSA	NetMHCpan	25.9	21.8	0.842	138	0.051	73.474	63.29	0.861	40.63	44.56	21.8	25.9	100.2559138	112.230268	85.95081518	102.3882217	M7_p20	0.828571429	1.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.06	138	0	0	NA	18qE4	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	sgMsh2	cell line
chr19	37698433	37698433	A	G	ENSMUST00000025946.6	1	ENSMUSG00000024987	missense	H/R	111	Cyp26a1	ENSMUST00000025946.6:c.332A>G	ENSMUSP00000025946.5:p.His111Arg	H-2-Kb	9	8	4	VSVRWPASV	VSVHWPASV	NetMHC	49.19	122.37	2.488	91	0.143	313.003	320.127	1.023	122.37	49.19	231.7	147.1	440.6664633	494.435904	408.5545015	478.9056933	M7_p20	0.342857143	0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.157	91	0	0	NA	19qC2	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.733598215	sgMsh2	cell line
chr19	24272399	24272399	T	G	ENSMUST00000081333.10	1	ENSMUSG00000059363	missense	E/A	108	Fxn	ENSMUST00000081333.10:c.323A>C	ENSMUSP00000080081.4:p.Glu108Ala	H-2-Kb	9	5	7	SLAEFFADL	SLAEFFEDL	NetMHCpan	41	215.1	5.246	62	0.484	210.914	670.903	3.181	519.09	55.18	215.1	41	879.2451877	382.0410236	822.7161071	366.6485738	M7_p20	0.857142857	1.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.488	62	0	0	NA	19qB	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	3	1	sgMsh2	cell line
chr19	5655062	5655062	A	G	ENSMUST00000071857.12	1	ENSMUSG00000056917	missense	F/L	502	Sipa1	ENSMUST00000071857.12:c.1504T>C	ENSMUSP00000073618.5:p.Phe502Leu	H-2-Kb	9	4	8	ANADFRALL	ANADFRAFL	NetMHC	68.93	102.13	1.482	70	0.229	144.716	251.549	1.738	102.13	68.93	70.4	70.6	400.9682638	218.831582	458.4056903	275.5814621	M7_p20	0.857142857	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.218	70	0	0	NA	19qA	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	sgMsh2	cell line
chr19	13445599	13445599	A	G	ENSMUST00000217249.1	5	ENSMUSG00000096320	missense	T/A	196	Olfr1471	ENSMUST00000217249.1:c.586A>G	ENSMUSP00000150749.1:p.Thr196Ala	H-2-Kb	9	10	2	IALLVLATL	ITLLVLATL	NetMHC	124.05	139.69	1.126	994	0.32	228.715	283.656	1.24	139.69	124.05	144.4	129.9	462.4981501	335.8226621	422.9119919	327.5291816	M7_p20	2.928571429	3.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.314	994	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr19	13453837	13453837	G	A	ENSMUST00000096201.3	5	ENSMUSG00000095189	missense	R/C	227	Olfr1472	ENSMUST00000096201.3:c.679C>T	ENSMUSP00000093915.3:p.Arg227Cys	H-2-Kb	9	5	7	IAILRMCSV	IAILRMRSV	NetMHCpan	154	207.9	1.35	560	0.193	210.333	264.356	1.257	135.27	172.21	207.9	154	370.7746213	299.3022626	320.8115533	248.4562923	M7_p20	1.657142857	2.071428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.182	560	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.850413217	sgMsh2	cell line
chr18	63106236	63106236	A	G	ENSMUST00000047480.12	1	ENSMUSG00000041482	missense	Y/H	758	Piezo2	ENSMUST00000047480.12:c.2272T>C	ENSMUSP00000040019.5:p.Tyr758His	H-2-Kb	9	11	1	HQFENFPGL	YQFENFPGL	NetMHC	224.35	73.89	0.329	86	0.244	340.194	176.67	0.519	73.89	224.35	81	253.7	272.3391013	426.6875784	329.7995054	557.5065832	M7_p20	0.057142857	0.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.259	86	0	0	NA	18qE1	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr18	63106236	63106236	A	G	ENSMUST00000047480.12	1	ENSMUSG00000041482	missense	Y/H	758	Piezo2	ENSMUST00000047480.12:c.2272T>C	ENSMUSP00000040019.5:p.Tyr758His	H-2-Kb	9	5	7	LIFIYTHQF	LIFIYTYQF	NetMHCpan	147.6	417.1	2.826	86	0.244	209.18	182.911	0.874	177.41	232.9	417.1	147.6	188.4126249	250.6744092	154.9708446	185.4598909	M7_p20	0.2	1.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.259	86	0	0	NA	18qE1	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr19	16383254	16383254	G	A	ENSMUST00000025541.5	1	ENSMUSG00000024639	missense	V/M	314	Gnaq	ENSMUST00000025541.5:c.940G>A	ENSMUSP00000025541.5:p.Val314Met	H-2-Kb	9	5	7	FILKMFMDL	FILKMFVDL	NetMHC	268.8	623.27	2.319	251	0.167	358.268	502.216	1.402	623.27	268.8	645.4	411.6	381.1623536	362.3347605	317.8703353	354.201177	M7_p20	0.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.177	251	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.827050216	sgMsh2	cell line
chr19	11283780	11283780	AT	A	ENSMUST00000067673.12	1	ENSMUSG00000054523	FS	N/X	5	Ms4a5	ENSMUST00000067673.12:c.14del	ENSMUSP00000066960.6:p.Asn5MetfsTer46	H-2-Kb	9	7	0	IVPCSWCSL	NA	NetMHCpan	274.5	NA	NA	352	0.179	465.013	NA	NA	NA	282.51	NA	274.5	NA	648.7987433	NA	647.5152482	M7_p20	0.671428571	1.485714286	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;Vardict	3	0.179	352	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.836395417	sgMsh2	cell line
chr19	5098235	5098235	T	C	ENSMUST00000025805.7	1	ENSMUSG00000024873	missense	Y/C	10	Cnih2	ENSMUST00000025805.7:c.29A>G	ENSMUSP00000025805.6:p.Tyr10Cys	H-2-Kb	9	6	5	AAFCCMLTL	AAFCYMLTL	NetMHCpan	250.3	16.7	0.067	17	0.176	277.598	69.978	0.252	55.38	282.77	16.7	250.3	100.2559138	335.8226621	84.57655669	272.4269072	M7_p20	2.371428571	2.442857143	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.233	17	0	0	NA	19qA	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	sgMsh2	cell line
chr19	16641572	16641572	TA	T	ENSMUST00000068156.7	2	ENSMUSG00000046230	FS	Y/X	2877	Vps13a	ENSMUST00000068156.7:c.8629del	ENSMUSP00000068716.6:p.Tyr2877MetfsTer20	H-2-Kb	9	5	7	GVEAFFMNL	GVEAFFYEP	NetMHCpan	209.8	25558.5	121.823	131	0.206	428.684	14626.295	34.119	23829.46	327.4	25558.5	209.8	3598.404656	632.5720517	5423.12981	529.9684305	M7_p20	0.871428571	1.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.192	131	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.897139218	sgMsh2	cell line
chr18	90524320	90524320	A	G	ENSMUST00000025515.6	1	ENSMUSG00000024614	missense	T/A	181	Tmx3	ENSMUST00000025515.6:c.541A>G	ENSMUSP00000025515.6:p.Thr181Ala	H-2-Kb	9	10	2	YAYFFSASE	YTYFFSASE	SMM	136.808	188.413	1.377	138	0.051	270.518	351.792	1.3	477.51	365.95	953.6	577.1	188.4126249	136.8075294	226.073678	175.0854271	M7_p20	0.142857143	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.06	138	0	0	NA	18qE4	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	sgMsh2	cell line
chr19	23350619	23350619	T	C	ENSMUST00000036069.7	1	ENSMUSG00000033207	missense	K/E	462	Mamdc2	ENSMUST00000036069.7:c.1384A>G	ENSMUSP00000045432.6:p.Lys462Glu	H-2-Kb	9	8	4	ISFEKPMPT	ISFKKPMPT	SMMPMBEC	350.954	347.736	0.991	249	0.12	411.952	407.077	0.988	422.41	431.16	402.9	464.7	411.2538721	392.7443988	347.7362769	350.9538411	M7_p20	-0.942857143	-0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.133	249	0	0	NA	19qB	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.621455812	sgMsh2	cell line
chr19	34039172	34039172	A	G	ENSMUST00000054260.7	1	ENSMUSG00000024771	missense	S/G	267	Lipk	ENSMUST00000054260.7:c.799A>G	ENSMUSP00000053913.6:p.Ser267Gly	H-2-Kb	9	4	8	SNFLFSLGG	SNFLFSLSG	SMM	263.7	295.876	1.122	158	0.253	383.954	383.395	0.999	645.93	475	380.2	387.5	295.876178	263.6999212	386.5894518	380.4083139	M7_p20	1.657142857	1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.267	158	0	0	NA	19qC1	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr2	10126177	10126177	T	G	ENSMUST00000042290.13	1	ENSMUSG00000037254	missense	K/N	116	Itih2	ENSMUST00000042290.13:c.348A>C	ENSMUSP00000046530.7:p.Lys116Asn	H-2-Db	9	7	5	VQIPNGAFI	VQIPKGAFI	NetMHC	15.68	3324.83	212.043	232	0.297	65.122	3234.913	49.675	3324.83	15.68	2541.1	33.5	3144.995295	96.74310008	3833.275205	114.1747318	M7_p20	1.157142857	1.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.299	232	0	0	NA	2qA1	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr2	37790466	37790466	T	C	ENSMUST00000050372.9	5	ENSMUSG00000035403	missense	F/L	469	Crb2	ENSMUST00000050372.9:c.1405T>C	ENSMUSP00000058007.7:p.Phe469Leu	H-2-Db	9	7	5	LALRLRTTL	LALRFRTTL	SMM	127.826	330.081	2.582	66	0.333	152.598	365.275	2.394	278.88	139.02	657.5	644.7	330.0806	127.8262358	400.4700113	166.1766501	M7_p20	0.142857143	0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.333	66	0	0	NA	2qB	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr19	42762166	42762166	T	C	ENSMUST00000160455.7	1	ENSMUSG00000025188	missense	Q/R	434	Hps1	ENSMUST00000160455.7:c.1301A>G	ENSMUSP00000125662.1:p.Gln434Arg	H-2-Db	9	6	6	SALRSRPFV	SALRSQPFV	NetMHC	147.3	140.22	0.952	47	0.106	410.083	350.555	0.855	140.22	147.3	329.9	448.1	371.2102845	372.0660126	452.4493827	462.9882827	M7_p20	-0.085714286	-0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.131	47	0	0	NA	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.612110612	sgMsh2	cell line
chr19	47129189	47129189	GA	G	ENSMUST00000072141.3	1	ENSMUSG00000025047	FS	E/X	1659	Pdcd11	ENSMUST00000072141.3:c.4979del	ENSMUSP00000072008.2:p.Asn1660ThrfsTer9	H-2-Db	9	5	8	VALLNLETC	VALLNLENM	SMMPMBEC	54.647	20.633	0.378	127	0.134	159.116	15.88	0.1	10.3	226.9	11.5	489.4	20.25909309	91.33137583	20.63336211	54.64746241	M7_p20	0.885714286	1.485714286	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.132	127	0	0	NA	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.616783212	sgMsh2	cell line
chr2	36640867	36640867	T	C	ENSMUST00000076850.1	NA	ENSMUSG00000059251	missense	V/A	276	Olfr345	ENSMUST00000076850.1:c.827T>C	ENSMUSP00000076122.1:p.Val276Ala	H-2-Db	9	11	1	AMYTVVTPM	VMYTVVTPM	SMM	309.471	396.844	1.282	702	0.261	385.497	583.525	1.514	828	883.24	698.7	411.6	396.8441659	309.4710297	468.3494343	359.3933194	M7_p20	0.857142857	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.255	702	0	0	NA	2qB	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr19	47733582	47733582	A	G	ENSMUST00000099353.5	1	ENSMUSG00000025066	missense	S/G	146	Sfr1	ENSMUST00000099353.5:c.436A>G	ENSMUSP00000096954.4:p.Ser146Gly	H-2-Kb	8	5	7	SSHSFCGV	SSHSFCSV	NetMHC	18.13	24.06	1.327	288	0.191	65.319	62.76	0.961	24.06	18.13	46.5	54.3	79.02054124	76.33786332	79.75170931	76.69022289	M7_p20	0.614285714	0.614285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.182	288	0	0	NA	19qD1	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.850413217	sgMsh2	cell line
chr2	36422162	36422162	A	T	ENSMUST00000216645.1	3	ENSMUSG00000094464	missense	I/F	255	Olfr339	ENSMUST00000216645.1:c.763A>T	ENSMUSP00000149068.1:p.Ile255Phe	H-2-Kb	8	4	8	VSLYYGAF	VSLYYGAI	NetMHC	20.3	8.51	0.419	607	0.269	56.21	23.161	0.412	8.51	20.3	9.7	32.3	37.73462166	94.56708451	36.62182643	80.11982647	M7_p20	0.657142857	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.265	607	0	0	NA	2qB	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr19	44153684	44153684	A	G	ENSMUST00000042026.4	1	ENSMUSG00000037578	missense	V/A	545	Pkd2l1	ENSMUST00000042026.4:c.1634T>C	ENSMUSP00000045675.4:p.Val545Ala	H-2-Kb	8	8	4	VTYAFFVF	VTYVFFVF	NetMHC	23.26	20.43	0.878	207	0.188	26.478	27.127	1.024	20.43	23.26	46.7	23.8	29.49442949	30.74255792	24.75939338	29.15680954	M7_p20	1.771428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.183	207	0	0	NA	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.855085817	sgMsh2	cell line
chr2	36422142	36422142	T	C	ENSMUST00000216645.1	3	ENSMUSG00000094464	missense	V/A	248	Olfr339	ENSMUST00000216645.1:c.743T>C	ENSMUSP00000149068.1:p.Val248Ala	H-2-Kb	8	11	1	ASLYYGAI	VSLYYGAI	NetMHCpan	32.7	9.7	0.297	654	0.263	79.694	23.161	0.291	8.51	33.86	9.7	32.7	37.73462166	142.1477533	36.62182643	125.5278239	M7_p20	0.9	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.257	654	0	0	NA	2qB	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr19	44153684	44153684	A	G	ENSMUST00000042026.4	1	ENSMUSG00000037578	missense	V/A	545	Pkd2l1	ENSMUST00000042026.4:c.1634T>C	ENSMUSP00000045675.4:p.Val545Ala	H-2-Kb	8	11	1	AFFVFFVL	VFFVFFVL	SMM	12.964	3.441	0.265	207	0.188	32.287	10.863	0.336	17.71	50.81	79.7	179.2	3.441438398	12.96402918	4.015503419	13.76385219	M7_p20	3.342857143	3.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.183	207	0	0	NA	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.855085817	sgMsh2	cell line
chr2	32673367	32673367	A	G	ENSMUST00000009705.13	1	ENSMUSG00000026814	missense	T/A	312	Eng	ENSMUST00000009705.13:c.934A>G	ENSMUSP00000009705.7:p.Thr312Ala	H-2-Kb	8	9	3	IVASFVEL	IVTSFVEL	NetMHCpan	22.7	36.5	1.608	108	0.241	84.25	86.074	1.022	64.07	68.33	36.5	22.7	111.8767908	100.1705365	108.0786721	107.0878008	M7_p20	1.785714286	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.243	108	0	0	NA	2qB	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr2	32673367	32673367	A	G	ENSMUST00000009705.13	1	ENSMUSG00000026814	missense	T/A	312	Eng	ENSMUST00000009705.13:c.934A>G	ENSMUSP00000009705.7:p.Thr312Ala	H-2-Kb	8	11	1	ASFVELPL	TSFVELPL	SMMPMBEC	56.72	44.539	0.785	108	0.241	72.04	60.417	0.839	73.04	82.88	54.5	61.2	66.33458249	83.70280268	44.53895263	56.7204934	M7_p20	1.242857143	1.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.243	108	0	0	NA	2qB	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr2	36812348	36812348	A	G	ENSMUST00000213988.1	5	ENSMUSG00000075384	missense	V/A	248	Olfr3	ENSMUST00000213988.1:c.743T>C	ENSMUSP00000149118.1:p.Val248Ala	H-2-Kb	8	11	1	AALYYGSI	VALYYGSI	NetMHCpan	65.9	18.9	0.287	251	0.12	278.985	74.323	0.266	26.82	140.39	18.9	65.9	132.965815	500.8872766	121.8260042	417.5802981	M7_p20	0.9	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.107	251	0	0	NA	2qB	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	0.49996821	sgMsh2	cell line
chr2	16357184	16357184	T	C	ENSMUST00000028081.12	1	ENSMUSG00000026748	missense	F/S	20	Plxdc2	ENSMUST00000028081.12:c.59T>C	ENSMUSP00000028081.6:p.Phe20Ser	H-2-Kb	8	5	7	VMLLCHSL	VMLLCHFL	NetMHCpan	111.4	240.8	2.162	113	0.372	167.948	200.33	1.193	262.88	161.82	240.8	111.4	154.0777756	181.0256018	159.8600704	174.0764414	M7_p20	1.685714286	1.742857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.376	113	0	0	NA	2qA2	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr19	56371846	56371846	T	C	ENSMUST00000073536.12	1	ENSMUSG00000049134	missense	M/V	466	Nrap	ENSMUST00000073536.12:c.1396A>G	ENSMUSP00000073228.6:p.Met466Val	H-2-Kb	8	9	3	TTVRLVPL	TTMRLVPL	NetMHCpan	155.2	55.8	0.36	85	0.224	174.998	95.165	0.544	86.4	192.33	55.8	155.2	147.8223152	190.8710225	103.9297781	159.1255801	M7_p20	1.314285714	1.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.214	85	0	0	NA	19qD2	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.99993642	sgMsh2	cell line
chr2	36812348	36812348	A	G	ENSMUST00000213988.1	5	ENSMUSG00000075384	missense	V/A	248	Olfr3	ENSMUST00000213988.1:c.743T>C	ENSMUSP00000149118.1:p.Val248Ala	H-2-Kb	8	6	6	SHLSVAAL	SHLSVVAL	SMM	188.686	545.431	2.891	251	0.12	240.169	896.71	3.734	1064.4	227.56	1219.7	725.4	545.4312289	188.68614	729.0209351	252.7784229	M7_p20	1.628571429	1.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.107	251	0	0	NA	2qB	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	0.49996821	sgMsh2	cell line
chr2	20859758	20859758	T	G	ENSMUST00000154230.8	1	ENSMUSG00000036591	missense	K/N	1228	Arhgap21	ENSMUST00000154230.8:c.3684A>C	ENSMUSP00000122497.2:p.Lys1228Asn	H-2-Kb	8	10	2	LNSFFRKL	LKSFFRKL	NetMHCpan	63	1547.8	24.568	152	0.151	325.727	2018.704	6.198	4540.17	230.01	1547.8	63	2097.683683	426.324214	1939.724271	421.444121	M7_p20	-0.471428571	-0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.171	152	0	0	NA	2qA3	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	0.799014616	sgMsh2	cell line
chr2	36640867	36640867	T	C	ENSMUST00000076850.1	NA	ENSMUSG00000059251	missense	V/A	276	Olfr345	ENSMUST00000076850.1:c.827T>C	ENSMUSP00000076122.1:p.Val276Ala	H-2-Kb	8	9	3	VAAMYTVV	VAVMYTVV	NetMHCpan	134.4	75.6	0.562	702	0.261	346.666	148.146	0.427	95.04	349.98	75.6	134.4	231.0681036	343.3523309	201.251905	390.6069803	M7_p20	1.7	1.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.255	702	0	0	NA	2qB	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr19	38795525	38795525	A	G	ENSMUST00000025963.7	1	ENSMUSG00000024999	missense	Y/H	580	Noc3l	ENSMUST00000025963.7:c.1738T>C	ENSMUSP00000025963.7:p.Tyr580His	H-2-Kb	8	11	1	HTHLYKTL	YTHLYKTL	SMMPMBEC	323.4	167.009	0.516	567	0.176	480.348	160.895	0.335	154.78	777.63	65.4	490	200.7890385	470.6954498	167.0090478	323.3999884	M7_p20	-0.314285714	-0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.179	567	0	0	NA	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.836395417	sgMsh2	cell line
chr2	36907557	36907557	A	G	ENSMUST00000217479.1	5	ENSMUSG00000055088	missense	T/A	204	Olfr354	ENSMUST00000217479.1:c.610A>G	ENSMUSP00000149298.1:p.Thr204Ala	H-2-Kb	8	10	2	IAMGLVFL	ITMGLVFL	NetMHCpan	258.7	288.5	1.115	319	0.185	446.648	303.365	0.679	858.67	783.84	288.5	258.7	318.2291802	491.7450535	253.9451951	401.5503419	M7_p20	2.557142857	2.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.193	319	0	0	NA	2qB	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	0.901811818	sgMsh2	cell line
chr19	44153684	44153684	A	G	ENSMUST00000042026.4	1	ENSMUSG00000037578	missense	V/A	545	Pkd2l1	ENSMUST00000042026.4:c.1634T>C	ENSMUSP00000045675.4:p.Val545Ala	H-2-Kb	9	8	4	VTYAFFVFF	VTYVFFVFF	NetMHC	18.25	16.24	0.89	207	0.188	21.619	16.215	0.75	16.24	18.25	64.3	35.8	13.30791444	21.04311361	16.19011748	22.19473684	M7_p20	2.271428571	2.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.183	207	0	0	NA	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.855085817	sgMsh2	cell line
chr2	36812348	36812348	A	G	ENSMUST00000213988.1	5	ENSMUSG00000075384	missense	V/A	248	Olfr3	ENSMUST00000213988.1:c.743T>C	ENSMUSP00000149118.1:p.Val248Ala	H-2-Kb	9	10	2	VAALYYGSI	VVALYYGSI	NetMHCpan	20.5	30.8	1.502	251	0.12	51.603	61.652	1.195	40.87	30.05	30.8	20.5	82.43468827	73.30101696	84.57655669	73.15600821	M7_p20	0.9	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.107	251	0	0	NA	2qB	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	0.49996821	sgMsh2	cell line
chr19	44153684	44153684	A	G	ENSMUST00000042026.4	1	ENSMUSG00000037578	missense	V/A	545	Pkd2l1	ENSMUST00000042026.4:c.1634T>C	ENSMUSP00000045675.4:p.Val545Ala	H-2-Kb	9	11	1	AFFVFFVLL	VFFVFFVLL	SMM	22.757	7.658	0.337	207	0.188	34.218	15.048	0.44	19.57	39.38	85	173.7	7.657905451	22.7567375	10.52567606	29.05694826	M7_p20	3.485714286	3.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.183	207	0	0	NA	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.855085817	sgMsh2	cell line
chr2	36422162	36422162	A	T	ENSMUST00000216645.1	3	ENSMUSG00000094464	missense	I/F	255	Olfr339	ENSMUST00000216645.1:c.763A>T	ENSMUSP00000149068.1:p.Ile255Phe	H-2-Kb	9	4	8	VSLYYGAFI	VSLYYGAII	NetMHCpan	33.9	59	1.74	607	0.269	143.531	163.782	1.141	101.49	43.14	59	33.9	247.8049629	289.8077532	226.073678	243.9214539	M7_p20	1.414285714	1.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.265	607	0	0	NA	2qB	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr2	35422190	35422190	A	G	ENSMUST00000102794.7	1	ENSMUSG00000035778	missense	Y/H	59	Ggta1	ENSMUST00000102794.7:c.175T>C	ENSMUSP00000099858.1:p.Tyr59His	H-2-Kb	9	4	8	VVVVFWEHV	VVVVFWEYV	NetMHC	48.89	78.19	1.599	164	0.25	111.82	155.423	1.39	78.19	48.89	170.7	86.2	143.2550696	137.4390042	167.5907328	153.196908	M7_p20	1.114285714	2.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.247	164	0	0	NA	2qB	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr2	36422142	36422142	T	C	ENSMUST00000216645.1	3	ENSMUSG00000094464	missense	V/A	248	Olfr339	ENSMUST00000216645.1:c.743T>C	ENSMUSP00000149068.1:p.Val248Ala	H-2-Kb	9	10	2	VASLYYGAI	VVSLYYGAI	NetMHCpan	41.6	59.5	1.43	654	0.263	87.035	105.607	1.213	66.92	49.26	59.5	41.6	164.1005362	145.9183802	144.2945739	124.8101773	M7_p20	0.9	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.257	654	0	0	NA	2qB	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr19	44153684	44153684	A	G	ENSMUST00000042026.4	1	ENSMUSG00000037578	missense	V/A	545	Pkd2l1	ENSMUST00000042026.4:c.1634T>C	ENSMUSP00000045675.4:p.Val545Ala	H-2-Kb	9	5	7	VYFVTYAFF	VYFVTYVFF	SMM	53.347	76.933	1.442	207	0.188	78.174	169.486	2.168	233.23	78.32	694.7	138.5	76.93252737	53.3469998	105.7426037	78.02791461	M7_p20	1.771428571	1.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.183	207	0	0	NA	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.855085817	sgMsh2	cell line
chr2	36422162	36422162	A	T	ENSMUST00000216645.1	3	ENSMUSG00000094464	missense	I/F	255	Olfr339	ENSMUST00000216645.1:c.763A>T	ENSMUSP00000149068.1:p.Ile255Phe	H-2-Kb	9	3	9	VVSLYYGAF	VVSLYYGAI	NetMHC	95.95	66.92	0.697	607	0.269	109.707	105.607	0.963	66.92	95.95	59.5	150.8	164.1005362	111.4576803	144.2945739	107.9567993	M7_p20	0.657142857	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.265	607	0	0	NA	2qB	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr19	47733582	47733582	A	G	ENSMUST00000099353.5	1	ENSMUSG00000025066	missense	S/G	146	Sfr1	ENSMUST00000099353.5:c.436A>G	ENSMUSP00000096954.4:p.Ser146Gly	H-2-Kb	9	5	7	SSHSFCGVV	SSHSFCSVV	NetMHC	126.54	73.19	0.578	288	0.191	302.608	204.113	0.675	73.19	126.54	128.9	189.2	279.3251239	416.0159675	366.6485738	466.9280884	M7_p20	1.328571429	1.328571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.182	288	0	0	NA	19qD1	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.850413217	sgMsh2	cell line
chr2	36640867	36640867	T	C	ENSMUST00000076850.1	NA	ENSMUSG00000059251	missense	V/A	276	Olfr345	ENSMUST00000076850.1:c.827T>C	ENSMUSP00000076122.1:p.Val276Ala	H-2-Kb	9	11	1	AMYTVVTPM	VMYTVVTPM	NetMHCpan	76.7	26.3	0.343	702	0.261	166.153	57.965	0.349	44.11	134.04	26.3	76.7	72.79641631	216.3266376	71.82076058	198.2668013	M7_p20	0.857142857	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.255	702	0	0	NA	2qB	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr2	23110710	23110710	A	G	ENSMUST00000114529.9	1	ENSMUSG00000026781	missense	I/M	488	Acbd5	ENSMUST00000114529.9:c.1464A>G	ENSMUSP00000110175.2:p.Ile488Met	H-2-Kb	9	10	2	IMWPFIAQW	IIWPFIAQW	NetMHC	145.25	189.33	1.303	203	0.153	256.387	559.523	2.182	189.33	145.25	850.1	568	764.0292757	341.2793414	355.017695	171.4944225	M7_p20	0.314285714	1.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.153	203	0	0	NA	2qA3	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	0.714907814	sgMsh2	cell line
chr2	36890485	36890485	T	C	ENSMUST00000217215.2	5	ENSMUSG00000075382	missense	Y/C	121	Olfr353	ENSMUST00000217215.2:c.362A>G	ENSMUSP00000149378.1:p.Tyr121Cys	H-2-Kb	9	6	6	MAYDRCVAI	MAYDRYVAI	NetMHCpan	132.7	14.4	0.109	499	0.244	145.305	30.259	0.208	27.08	145.65	14.4	132.7	39.27443988	184.1238299	33.43874735	144.9606074	M7_p20	0.528571429	0.528571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.242	499	0	0	NA	2qB	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr2	36422162	36422162	A	T	ENSMUST00000216645.1	3	ENSMUSG00000094464	missense	I/F	255	Olfr339	ENSMUST00000216645.1:c.763A>T	ENSMUSP00000149068.1:p.Ile255Phe	H-2-Kb	9	6	6	LYYGAFIGL	LYYGAIIGL	SMM	119.154	421.803	3.54	607	0.269	154.202	569.436	3.693	766.3	168.39	604	152	421.8033261	119.1543769	534.872168	156.4047722	M7_p20	1.542857143	1.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.265	607	0	0	NA	2qB	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr2	13444324	13444324	T	C	ENSMUST00000091436.6	5	ENSMUSG00000026726	missense	E/G	980	Cubn	ENSMUST00000091436.6:c.2939A>G	ENSMUSP00000089009.5:p.Glu980Gly	H-2-Kb	9	4	8	VFSSFYLGF	VFSSFYLEF	SMM	101.651	116.711	1.148	154	0.221	184.67	276.944	1.5	372.65	205.94	425.2	408.8	116.7105189	101.6506125	181.2383084	163.3992279	M7_p20	0.871428571	1.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.221	154	0	0	NA	2qA1	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr2	32673367	32673367	A	G	ENSMUST00000009705.13	1	ENSMUSG00000026814	missense	T/A	312	Eng	ENSMUST00000009705.13:c.934A>G	ENSMUSP00000009705.7:p.Thr312Ala	H-2-Kb	9	8	4	SIVASFVEL	SIVTSFVEL	NetMHCpan	172	152.9	0.889	108	0.241	379.729	326.134	0.859	207.38	242.91	152.9	172	461.4344339	516.547186	444.8872915	529.9684305	M7_p20	1.785714286	2.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.243	108	0	0	NA	2qB	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr2	32673367	32673367	A	G	ENSMUST00000009705.13	1	ENSMUSG00000026814	missense	T/A	312	Eng	ENSMUST00000009705.13:c.934A>G	ENSMUSP00000009705.7:p.Thr312Ala	H-2-Kb	9	11	1	ASFVELPLV	TSFVELPLV	SMM	299.992	254.748	0.849	108	0.241	371.47	300.368	0.809	268.65	327.64	378.9	415.3	254.7475407	299.9922256	332.0855664	418.0709584	M7_p20	1.957142857	1.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.243	108	0	0	NA	2qB	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr19	44153684	44153684	A	G	ENSMUST00000042026.4	1	ENSMUSG00000037578	missense	V/A	545	Pkd2l1	ENSMUST00000042026.4:c.1634T>C	ENSMUSP00000045675.4:p.Val545Ala	H-2-Kb	9	10	2	YAFFVFFVL	YVFFVFFVL	SMMPMBEC	210.984	243.921	1.156	207	0.188	312.217	409.242	1.311	559	489.13	827.6	393.7	259.483651	230.7331526	243.9214539	210.9842323	M7_p20	3.342857143	3.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.183	207	0	0	NA	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.855085817	sgMsh2	cell line
chr2	36640867	36640867	T	C	ENSMUST00000076850.1	NA	ENSMUSG00000059251	missense	V/A	276	Olfr345	ENSMUST00000076850.1:c.827T>C	ENSMUSP00000076122.1:p.Val276Ala	H-2-Kb	9	8	4	IVAAMYTVV	IVAVMYTVV	NetMHCpan	358.8	357.5	0.996	702	0.261	385.663	317.816	0.824	510.51	798.37	357.5	358.8	246.6664026	390.0407654	278.131386	381.2852457	M7_p20	1.7	1.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.255	702	0	0	NA	2qB	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr19	44153684	44153684	A	G	ENSMUST00000042026.4	1	ENSMUSG00000037578	missense	V/A	545	Pkd2l1	ENSMUST00000042026.4:c.1634T>C	ENSMUSP00000045675.4:p.Val545Ala	H-2-Kb	10	8	4	VTYAFFVFFV	VTYVFFVFFV	NetMHC	55.76	45.18	0.81	207	0.188	458.736	672.477	1.466	45.18	55.76	412	191.6	1433.276565	902.2564596	932.9535036	725.8719263	M7_p20	3.057142857	3.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.183	207	0	0	NA	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.855085817	sgMsh2	cell line
chr19	44153684	44153684	A	G	ENSMUST00000042026.4	1	ENSMUSG00000037578	missense	V/A	545	Pkd2l1	ENSMUST00000042026.4:c.1634T>C	ENSMUSP00000045675.4:p.Val545Ala	H-2-Kb	11	8	4	VTYAFFVFFVL	VTYVFFVFFVL	NetMHC	35.43	29.25	0.826	207	0.188	424.25	451.635	1.065	29.25	35.43	165.4	84.7	1782.871325	1782.871325	737.8702492	763.8006085	M7_p20	3.342857143	3.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.183	207	0	0	NA	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.855085817	sgMsh2	cell line
chr2	65763849	65763849	T	C	ENSMUST00000028377.13	5	ENSMUSG00000075318	missense	S/P	1681	Scn2a	ENSMUST00000028377.13:c.5041T>C	ENSMUSP00000028377.7:p.Ser1681Pro	H-2-Db	9	8	4	FGMPNFAYV	FGMSNFAYV	NetMHCpan	10.7	5.9	0.551	340	0.288	61.961	27.758	0.448	4.26	11.3	5.9	10.7	49.6158002	112.621161	50.5324087	118.732606	M7_p20	0.614285714	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.287	340	0	0	NA	2qC1.3	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr2	86170923	86170923	T	G	ENSMUST00000215171.1	5	ENSMUSG00000075200	missense	K/T	298	Olfr1044	ENSMUST00000215171.1:c.893A>C	ENSMUSP00000150199.1:p.Lys298Thr	H-2-Db	9	3	9	YSLRNKEVT	YSLRNKEVK	NetMHC	87.92	1335.88	15.194	342	0.149	176.299	819.153	4.646	1335.88	87.92	5047.6	192.8	302.4266091	282.2409336	223.1361832	159.7975071	M7_p20	-1.157142857	-1.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.15	342	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.700890014	sgMsh2	cell line
chr2	87418564	87418564	CA	C	ENSMUST00000054974.1	NA	ENSMUSG00000043274	FS	Q/X	172	Olfr1123	ENSMUST00000054974.1:c.517del	ENSMUSP00000058786.1:p.Thr173HisfsTer35	H-2-Db	9	34	0	HQYSNLLVV	NA	NetMHC	103.9	NA	NA	491	0.153	214.459	NA	NA	NA	103.9	NA	140.8	NA	292.8329887	NA	288.1177403	M7_p20	1.485714286	1.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.151	491	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.705562614	sgMsh2	cell line
chr2	87418564	87418564	CA	C	ENSMUST00000054974.1	NA	ENSMUSG00000043274	FS	Q/X	172	Olfr1123	ENSMUST00000054974.1:c.517del	ENSMUSP00000058786.1:p.Thr173HisfsTer35	H-2-Db	9	15	0	FSLCLFVAL	NA	NetMHC	117.88	NA	NA	491	0.153	212.776	NA	NA	NA	117.88	NA	482.2	NA	196.1643123	NA	229.387633	M7_p20	3.242857143	3.242857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.151	491	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.705562614	sgMsh2	cell line
chr2	87802800	87802800	C	T	ENSMUST00000090708.1	NA	ENSMUSG00000068815	missense	T/I	137	Olfr1143	ENSMUST00000090708.1:c.410C>T	ENSMUSP00000088210.1:p.Thr137Ile	H-2-Db	10	2	10	QAISNPLLYI	QAISNPLLYT	NetMHC	29.98	1996.39	66.591	377	0.143	271.095	2118.552	7.815	1996.39	29.98	3906.9	51	2158.986864	491.1905468	2078.117023	633.3882463	M7_p20	0.7	1.142857143	TRUE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.149	377	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.696217414	sgMsh2	cell line
chr2	87418564	87418564	CA	C	ENSMUST00000054974.1	NA	ENSMUSG00000043274	FS	Q/X	172	Olfr1123	ENSMUST00000054974.1:c.517del	ENSMUSP00000058786.1:p.Thr173HisfsTer35	H-2-Kb	8	32	0	ISHQYSNL	NA	NetMHC	3.34	NA	NA	491	0.153	3.438	NA	NA	NA	3.34	NA	5.1	NA	3.505419514	NA	3.370854446	M7_p20	-1.328571429	-1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.151	491	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.705562614	sgMsh2	cell line
chr2	87746294	87746294	A	G	ENSMUST00000214723.1	5	ENSMUSG00000068817	missense	I/V	33	Olfr1140	ENSMUST00000214723.1:c.97A>G	ENSMUSP00000149706.1:p.Ile33Val	H-2-Kb	8	7	5	ISFLVIYL	ISFLIIYL	NetMHC	10.32	14.6	1.415	480	0.167	11.64	22.166	1.904	14.6	10.32	24.3	25.9	25.86663888	11.2911974	20.03272365	11.98781411	M7_p20	2.428571429	2.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.169	480	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.789669416	sgMsh2	cell line
chr2	85992650	85992650	A	G	ENSMUST00000216807.1	5	ENSMUSG00000043267	missense	T/A	278	Olfr1031	ENSMUST00000216807.1:c.832A>G	ENSMUSP00000149225.1:p.Thr278Ala	H-2-Kb	8	6	6	VAVFYATV	VAVFYTTV	NetMHCpan	13.4	24.1	1.799	182	0.11	32.721	98.991	3.025	59.07	16.83	24.1	13.4	138.9120754	48.61160944	152.6651821	52.32870654	M7_p20	1.828571429	1.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.111	182	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.51865861	sgMsh2	cell line
chr2	85923475	85923475	T	C	ENSMUST00000217615.1	5	ENSMUSG00000042863	missense	V/A	69	Olfr1026	ENSMUST00000217615.1:c.206T>C	ENSMUSP00000150995.1:p.Val69Ala	H-2-Kb	8	6	6	SHLSFADL	SHLSFVDL	NetMHC	17.51	106.99	6.11	769	0.172	52.608	151.886	2.887	106.99	17.51	226.6	124.2	142.8038776	49.40148455	160.9681675	55.81359543	M7_p20	0.671428571	0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.178	769	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.831722816	sgMsh2	cell line
chr2	52137428	52137428	AT	A	ENSMUST00000036934.11	5	ENSMUSG00000026950	FS	I/X	7097	Neb	ENSMUST00000036934.11:c.21289del	ENSMUSP00000047763.5:p.Ile7097SerfsTer9	H-2-Kb	8	11	1	SSVLYMTI	NA	NetMHC	21.86	NA	NA	67	0.224	84.519	NA	NA	NA	21.86	NA	31.4	NA	137.6385219	NA	137.9558114	M7_p20	1.657142857	1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.216	67	0	0	NA	2qC1.1	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr2	75891847	75891847	TA	T	ENSMUST00000047232.13	1	ENSMUSG00000042410	FS	L/X	460	Agps	ENSMUST00000047232.13:c.1385del	ENSMUSP00000041967.7:p.Lys462SerfsTer15	H-2-Kb	8	12	2	KSFILQSL	NA	NetMHCpan	35.3	NA	NA	53	0.189	53.579	NA	NA	NA	36.08	NA	35.3	NA	71.07878574	NA	81.98605697	M7_p20	1.4	1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.208	53	0	0	NA	2qC3	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	0.971900819	sgMsh2	cell line
chr2	87949574	87949574	A	G	ENSMUST00000216191.1	5	ENSMUSG00000075144	missense	F/L	220	Olfr1156	ENSMUST00000216191.1:c.658T>C	ENSMUSP00000151183.1:p.Phe220Leu	H-2-Kb	8	4	8	IIFTSYLL	IIFTSYLF	NetMHCpan	20.1	128.8	6.408	466	0.129	37.503	435.354	11.608	284.92	37.79	128.8	20.1	604.9785825	37.21688324	585.787365	46.6380088	M7_p20	1.728571429	1.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.125	466	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.584075012	sgMsh2	cell line
chr2	83803240	83803240	A	T	ENSMUST00000028499.10	1	ENSMUSG00000027087	missense	M/L	1014	Itgav	ENSMUST00000028499.10:c.3040A>T	ENSMUSP00000028499.4:p.Met1014Leu	H-2-Kb	8	4	8	LVFVMYRL	LVFVMYRM	NetMHCpan	26.5	84.2	3.177	266	0.147	44.564	166.85	3.744	135.21	38.46	84.2	26.5	261.0597994	65.12383991	198.4906254	50.66872779	M7_p20	1.585714286	1.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.148	266	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.691544814	sgMsh2	cell line
chr2	55437642	55437642	T	C	ENSMUST00000067101.9	1	ENSMUSG00000026824	missense	Y/H	148	Kcnj3	ENSMUST00000067101.9:c.442T>C	ENSMUSP00000063329.3:p.Tyr148His	H-2-Kb	8	7	5	IGYGHRYI	IGYGYRYI	NetMHCpan	87.5	14.1	0.161	125	0.176	112.821	23.035	0.204	8.7	88.95	14.1	87.5	35.29717922	136.691025	31.96980594	138.2738324	M7_p20	-0.942857143	-0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.194	125	0	0	NA	2qC1.1	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	0.906484418	sgMsh2	cell line
chr2	83803240	83803240	A	T	ENSMUST00000028499.10	1	ENSMUSG00000027087	missense	M/L	1014	Itgav	ENSMUST00000028499.10:c.3040A>T	ENSMUSP00000028499.4:p.Met1014Leu	H-2-Kb	8	7	5	VMYRLGFF	VMYRMGFF	NetMHCpan	53.3	49	0.919	266	0.147	165.952	152.3	0.918	85.45	98.16	49	53.3	261.0597994	270.2340064	219.1492557	233.7437461	M7_p20	0.728571429	0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.148	266	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.691544814	sgMsh2	cell line
chr2	85799973	85799973	T	A	ENSMUST00000217410.2	3	ENSMUSG00000075209	missense	Q/L	99	Olfr1016	ENSMUST00000217410.2:c.296A>T	ENSMUSP00000149631.1:p.Gln99Leu	H-2-Kb	8	11	1	LFFFSAGL	QFFFSAGL	NetMHCpan	47.8	94.6	1.979	364	0.132	89.039	120.397	1.352	127.1	103.3	94.6	47.8	113.6946424	83.51029157	192.6371303	94.56708451	M7_p20	1.828571429	1.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.148	364	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.691544814	sgMsh2	cell line
chr2	87949574	87949574	A	G	ENSMUST00000216191.1	5	ENSMUSG00000075144	missense	F/L	220	Olfr1156	ENSMUST00000216191.1:c.658T>C	ENSMUSP00000151183.1:p.Phe220Leu	H-2-Kb	8	7	5	TSYLLILI	TSYLFILI	NetMHC	115.99	6.61	0.057	466	0.129	177.713	15.522	0.087	6.61	115.99	12.9	161.9	19.94068165	210.2519343	18.14429089	193.5263029	M7_p20	2.614285714	2.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.125	466	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.584075012	sgMsh2	cell line
chr2	87746294	87746294	A	G	ENSMUST00000214723.1	5	ENSMUSG00000068817	missense	I/V	33	Olfr1140	ENSMUST00000214723.1:c.97A>G	ENSMUSP00000149706.1:p.Ile33Val	H-2-Kb	8	11	1	VIYLIILV	IIYLIILV	NetMHC	135.04	157.17	1.164	480	0.167	188.94	193.038	1.022	157.17	135.04	748.7	686.6	205.466016	192.6371303	180.6092545	185.2422298	M7_p20	3.428571429	3.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.169	480	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.789669416	sgMsh2	cell line
chr2	86483115	86483115	G	T	ENSMUST00000217292.2	5	ENSMUSG00000111772	missense	T/N	209	Olfr228	ENSMUST00000217292.2:c.626C>A	ENSMUSP00000149449.1:p.Thr209Asn	H-2-Kb	8	7	5	INLINSPL	INLITSPL	NetMHCpan	94.6	46.6	0.493	178	0.18	102.154	73.158	0.716	49.99	135.69	46.6	94.6	96.32521787	101.3304567	98.79614526	102.9769442	M7_p20	0.385714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.172	178	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.803687216	sgMsh2	cell line
chr2	87544785	87544785	C	T	ENSMUST00000102624.1	NA	ENSMUSG00000075156	missense	G/E	253	Olfr1128	ENSMUST00000102624.1:c.758G>A	ENSMUSP00000099684.1:p.Gly253Glu	H-2-Kb	8	6	6	VAIFHETL	VAIFHGTL	NetMHCpan	60.6	26.9	0.444	325	0.126	171.554	67.182	0.392	53.13	150.47	26.9	60.6	81.23440428	192.6371303	99.0238939	246.456343	M7_p20	0.785714286	0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.142	325	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.663509213	sgMsh2	cell line
chr2	84950115	84950115	A	G	ENSMUST00000090726.5	1	ENSMUSG00000027074	missense	I/M	304	Slc43a3	ENSMUST00000090726.5:c.912A>G	ENSMUSP00000088227.5:p.Ile304Met	H-2-Kb	8	10	2	IMQLWHYL	IIQLWHYL	NetMHCpan	119.9	144.2	1.203	531	0.173	141.839	106.596	0.752	132.33	155.4	144.2	119.9	79.38528349	144.1252256	80.8611661	139.5532644	M7_p20	0.085714286	0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.164	531	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.766306415	sgMsh2	cell line
chr2	87252877	87252877	A	AG	ENSMUST00000213513.1	5	ENSMUSG00000070856	FS	-/X	313-314	Olfr1115	ENSMUST00000213513.1:c.943dup	ENSMUSP00000150221.1:p.Ala315GlyfsTer16	H-2-Kb	8	17	0	IIYQIVSI	NA	NetMHCpan	77.2	NA	NA	111	0.144	172.093	NA	NA	NA	157.23	NA	77.2	NA	258.6663888	NA	186.956255	M7_p20	1.728571429	1.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.15	111	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.700890014	sgMsh2	cell line
chr2	87212904	87212904	A	T	ENSMUST00000215611.1	5	ENSMUSG00000070857	missense	K/I	4	Olfr1113	ENSMUST00000215611.1:c.11A>T	ENSMUSP00000150991.1:p.Lys4Ile	H-2-Kb	8	1	4	MQSIYVNL	MQSKYVNL	NetMHCpan	125	156.4	1.251	289	0.194	166.743	189.039	1.134	185.44	177.98	156.4	125	192.6371303	156.5813381	207.8452003	176.9049561	M7_p20	0.485714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.188	289	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	2	0.878448817	sgMsh2	cell line
chr2	65763849	65763849	T	C	ENSMUST00000028377.13	5	ENSMUSG00000075318	missense	S/P	1681	Scn2a	ENSMUST00000028377.13:c.5041T>C	ENSMUSP00000028377.7:p.Ser1681Pro	H-2-Kb	8	9	3	GMPNFAYV	GMSNFAYV	NetMHC	188.79	1429.79	7.573	340	0.288	469.967	1409.455	2.999	1429.79	188.79	1598	782.9	1389.120754	518.4895408	1017.981768	421.444121	M7_p20	0.614285714	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.287	340	0	0	NA	2qC1.3	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr2	76732118	76732118	GT	G	ENSMUST00000111846.8	5	ENSMUSG00000051747	FS	K/X	27048	Ttn	ENSMUST00000111846.8:c.81144del	ENSMUSP00000107477.2:p.Lys27048AsnfsTer39	H-2-Kb	8	24	0	KIWKSASL	NA	SMMPMBEC	197.124	NA	NA	153	0.196	216.815	NA	NA	NA	218.48	NA	312.2	NA	215.149331	NA	197.1242255	M7_p20	0.528571429	0.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.212	153	0	0	NA	2qC3	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	0.99059122	sgMsh2	cell line
chr2	88070610	88070610	T	C	ENSMUST00000215268.1	5	ENSMUSG00000075137	missense	I/M	257	Olfr1163	ENSMUST00000215268.1:c.771A>G	ENSMUSP00000149399.1:p.Ile257Met	H-2-Kb	8	4	8	ITIFHGTM	ITIFHGTI	NetMHCpan	54.6	90.7	1.661	337	0.181	222.92	357.12	1.602	513.54	221.07	90.7	54.6	363.6972355	224.7708563	350.5419514	239.1883374	M7_p20	0.6	0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.192	337	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	2	0.897139218	sgMsh2	cell line
chr2	84950115	84950115	A	G	ENSMUST00000090726.5	1	ENSMUSG00000027074	missense	I/M	304	Slc43a3	ENSMUST00000090726.5:c.912A>G	ENSMUSP00000088227.5:p.Ile304Met	H-2-Kb	8	6	6	VWLSIMQL	VWLSIIQL	NetMHC	228.51	467.17	2.044	531	0.173	454.969	639.757	1.406	467.17	228.51	434.4	283.7	1103.417837	781.1600059	812.3440428	626.2388407	M7_p20	1.257142857	1.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.164	531	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.766306415	sgMsh2	cell line
chr2	85799973	85799973	T	A	ENSMUST00000217410.2	3	ENSMUSG00000075209	missense	Q/L	99	Olfr1016	ENSMUST00000217410.2:c.296A>T	ENSMUSP00000149631.1:p.Gln99Leu	H-2-Kb	8	9	3	VALFFFSA	VAQFFFSA	NetMHCpan	119	226.9	1.907	364	0.132	194.024	494.393	2.548	849.18	276.29	226.9	119	475.0507412	198.4906254	513.7360001	189.5570756	M7_p20	2.142857143	2.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.148	364	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.691544814	sgMsh2	cell line
chr2	84612086	84612086	CT	C	ENSMUST00000189772.1	5	ENSMUSG00000101645	FS	K/X	634	Gm28635	ENSMUST00000189772.1:c.1901del	ENSMUSP00000141166.1:p.Lys634SerfsTer48	H-2-Kb	8	42	0	CEYTFHSL	NA	SMM	67.103	NA	NA	164	0.177	164.226	NA	NA	NA	320.59	NA	242.8	NA	67.10270075	NA	85.65249141	M7_p20	-0.414285714	-0.414285714	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.176	164	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.822377616	sgMsh2	cell line
chr2	86413389	86413389	A	G	ENSMUST00000099889.1	NA	ENSMUSG00000075185	missense	I/T	221	Olfr1061	ENSMUST00000099889.1:c.662T>C	ENSMUSP00000097474.1:p.Ile221Thr	H-2-Kb	8	6	6	GSYLLTLM	GSYLLILM	NetMHCpan	240.2	630.1	2.623	215	0.177	395.488	652.905	1.651	675.71	344.56	630.1	240.2	696.209588	630.579721	512.5544401	446.4162552	M7_p20	1.5	1.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.182	215	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.850413217	sgMsh2	cell line
chr2	87418564	87418564	CA	C	ENSMUST00000054974.1	NA	ENSMUSG00000043274	FS	Q/X	172	Olfr1123	ENSMUST00000054974.1:c.517del	ENSMUSP00000058786.1:p.Thr173HisfsTer35	H-2-Kb	8	16	0	SLCLFVAL	NA	SMMPMBEC	74.087	NA	NA	491	0.153	189.772	NA	NA	NA	350.34	NA	292.7	NA	86.84403626	NA	74.08665723	M7_p20	3.242857143	3.242857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.151	491	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.705562614	sgMsh2	cell line
chr2	87309299	87309299	G	A	ENSMUST00000121296.3	NA	ENSMUSG00000083706	missense	C/Y	170	Olfr1118	ENSMUST00000121296.3:c.509G>A	ENSMUSP00000144143.2:p.Cys170Tyr	H-2-Kb	8	9	3	FFYDIPPL	FFCDIPPL	SMM	236.995	2790.873	11.776	1025	0.16	301.38	3232.486	10.726	6586.44	361.02	3674.1	341.7	2790.872523	236.9954455	2598.603386	261.0597994	M7_p20	0.442857143	0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.162	1025	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.756961215	sgMsh2	cell line
chr2	73568222	73568222	A	G	ENSMUST00000028515.3	1	ENSMUSG00000027107	missense	V/A	291	Chrna1	ENSMUST00000028515.3:c.872T>C	ENSMUSP00000028515.3:p.Val291Ala	H-2-Kb	8	6	6	STSSAAPL	STSSAVPL	SMM	311.702	901.032	2.891	233	0.275	403.465	1443.597	3.578	1873.89	455.58	2427.9	1290.8	901.0315536	311.7022951	1013.304567	351.3500341	M7_p20	0.5	0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.26	233	0	0	NA	2qC3	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr2	86170996	86170996	C	T	ENSMUST00000215171.1	5	ENSMUSG00000075200	missense	A/T	274	Olfr1044	ENSMUST00000215171.1:c.820G>A	ENSMUSP00000150199.1:p.Ala274Thr	H-2-Kb	8	10	2	MTSVFYTV	MASVFYTV	NetMHCpan	238.2	211.8	0.889	374	0.152	362.779	490.422	1.352	456.35	458.08	211.8	238.2	524.4933667	339.4220093	610.5763804	386.1357391	M7_p20	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.155	374	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.724253014	sgMsh2	cell line
chr2	76732118	76732118	GT	G	ENSMUST00000111846.8	5	ENSMUSG00000051747	FS	K/X	27048	Ttn	ENSMUST00000111846.8:c.81144del	ENSMUSP00000107477.2:p.Lys27048AsnfsTer39	H-2-Kb	8	29	0	ASLQLPKL	NA	SMMPMBEC	291.568	NA	NA	153	0.196	323.533	NA	NA	NA	467.13	NA	352.8	NA	294.2659418	NA	291.5680954	M7_p20	0.228571429	0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.212	153	0	0	NA	2qC3	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	0.99059122	sgMsh2	cell line
chr2	88070610	88070610	T	C	ENSMUST00000215268.1	5	ENSMUSG00000075137	missense	I/M	257	Olfr1163	ENSMUST00000215268.1:c.771A>G	ENSMUSP00000149399.1:p.Ile257Met	H-2-Kb	8	5	7	TIFHGTML	TIFHGTIL	SMMPMBEC	234.823	688.24	2.931	337	0.181	278.821	751.228	2.694	1955.18	540.11	524	244.5	814.2166892	313.1410475	688.2401428	234.8226582	M7_p20	1.242857143	1.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.192	337	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	2	0.897139218	sgMsh2	cell line
chr2	86170996	86170996	C	T	ENSMUST00000215171.1	5	ENSMUSG00000075200	missense	A/T	274	Olfr1044	ENSMUST00000215171.1:c.820G>A	ENSMUSP00000150199.1:p.Ala274Thr	H-2-Kb	8	11	1	TSVFYTVI	ASVFYTVI	NetMHCpan	83.2	92.1	1.107	374	0.152	383.911	486.485	1.267	737.68	618.3	92.1	83.2	524.4933667	415.6616909	448.476819	352.1599796	M7_p20	1.842857143	1.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.155	374	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.724253014	sgMsh2	cell line
chr2	85992650	85992650	A	G	ENSMUST00000216807.1	5	ENSMUSG00000043267	missense	T/A	278	Olfr1031	ENSMUST00000216807.1:c.832A>G	ENSMUSP00000149225.1:p.Thr278Ala	H-2-Kb	9	5	7	MVAVFYATV	MVAVFYTTV	NetMHC	21.24	59.05	2.78	182	0.11	68.278	97.929	1.434	59.05	21.24	49.9	34.2	136.8075294	102.3552209	205.7074402	151.0949676	M7_p20	1.828571429	2.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.111	182	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.51865861	sgMsh2	cell line
chr2	87418564	87418564	CA	C	ENSMUST00000054974.1	NA	ENSMUSG00000043274	FS	Q/X	172	Olfr1123	ENSMUST00000054974.1:c.517del	ENSMUSP00000058786.1:p.Thr173HisfsTer35	H-2-Kb	9	32	0	ISHQYSNLL	NA	NetMHC	24.78	NA	NA	491	0.153	68.39	NA	NA	NA	24.78	NA	37.9	NA	98.88035114	NA	125.9650316	M7_p20	-0.671428571	-0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.151	491	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.705562614	sgMsh2	cell line
chr2	85799973	85799973	T	A	ENSMUST00000217410.2	3	ENSMUSG00000075209	missense	Q/L	99	Olfr1016	ENSMUST00000217410.2:c.296A>T	ENSMUSP00000149631.1:p.Gln99Leu	H-2-Kb	9	10	2	ALFFFSAGL	AQFFFSAGL	NetMHCpan	19.9	13.5	0.678	364	0.132	88.676	58.879	0.664	12.74	27.69	13.5	19.9	104.2581466	149.6614677	137.1671136	173.0812408	M7_p20	1.828571429	2.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.148	364	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.691544814	sgMsh2	cell line
chr2	87418564	87418564	CA	C	ENSMUST00000054974.1	NA	ENSMUSG00000043274	FS	Q/X	172	Olfr1123	ENSMUST00000054974.1:c.517del	ENSMUSP00000058786.1:p.Thr173HisfsTer35	H-2-Kb	9	31	0	VISHQYSNL	NA	NetMHC	46.03	NA	NA	491	0.153	153.473	NA	NA	NA	46.03	NA	113.7	NA	193.2457716	NA	213.4273146	M7_p20	-1.328571429	-0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.151	491	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.705562614	sgMsh2	cell line
chr2	85923475	85923475	T	C	ENSMUST00000217615.1	5	ENSMUSG00000042863	missense	V/A	69	Olfr1026	ENSMUST00000217615.1:c.206T>C	ENSMUSP00000150995.1:p.Val69Ala	H-2-Kb	9	5	7	LSHLSFADL	LSHLSFVDL	NetMHC	57.08	299.86	5.253	769	0.172	205.392	360.403	1.755	299.86	57.08	324.3	118.2	520.1277201	360.6699835	396.5062159	292.583614	M7_p20	0.671428571	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.178	769	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.831722816	sgMsh2	cell line
chr2	85799973	85799973	T	A	ENSMUST00000217410.2	3	ENSMUSG00000075209	missense	Q/L	99	Olfr1016	ENSMUST00000217410.2:c.296A>T	ENSMUSP00000149631.1:p.Gln99Leu	H-2-Kb	9	3	9	ISFASCVAL	ISFASCVAQ	NetMHCpan	41.2	6248.9	151.672	364	0.132	118.535	2718.814	22.937	4304.94	70.25	6248.9	41.2	1132.687219	216.825322	783.8807509	166.8207233	M7_p20	2.3	2.3	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.148	364	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.691544814	sgMsh2	cell line
chr2	71421695	71421695	T	C	ENSMUST00000028408.2	1	ENSMUSG00000027018	missense	V/A	257	Hat1	ENSMUST00000028408.2:c.770T>C	ENSMUSP00000028408.2:p.Val257Ala	H-2-Kb	9	10	2	TAHRYYISF	TVHRYYISF	NetMHCpan	47.9	55.5	1.159	70	0.214	103.154	124.62	1.208	116.73	91.69	55.5	47.9	142.5968723	126.7972983	132.5104107	114.6172542	M7_p20	-0.542857143	-0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.243	70	0	0	NA	2qC2	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr2	87949574	87949574	A	G	ENSMUST00000216191.1	5	ENSMUSG00000075144	missense	F/L	220	Olfr1156	ENSMUST00000216191.1:c.658T>C	ENSMUSP00000151183.1:p.Phe220Leu	H-2-Kb	9	4	8	IIFTSYLLI	IIFTSYLFI	NetMHCpan	39.3	53.8	1.369	466	0.129	102.779	167.887	1.633	164.28	102.46	53.8	39.3	203.287184	110.9455787	171.4944225	103.0979429	M7_p20	1.728571429	1.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.125	466	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.584075012	sgMsh2	cell line
chr2	84950115	84950115	A	G	ENSMUST00000090726.5	1	ENSMUSG00000027074	missense	I/M	304	Slc43a3	ENSMUST00000090726.5:c.912A>G	ENSMUSP00000088227.5:p.Ile304Met	H-2-Kb	9	5	7	VVWLSIMQL	VVWLSIIQL	NetMHC	111.02	203.8	1.836	531	0.173	213.688	249.939	1.17	203.8	111.02	467.5	197.1	271.7127388	263.6999212	228.165512	230.2767015	M7_p20	1.257142857	2.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.164	531	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.766306415	sgMsh2	cell line
chr2	85992650	85992650	A	G	ENSMUST00000216807.1	5	ENSMUSG00000043267	missense	T/A	278	Olfr1031	ENSMUST00000216807.1:c.832A>G	ENSMUSP00000149225.1:p.Thr278Ala	H-2-Kb	9	8	4	VFYATVIPM	VFYTTVIPM	NetMHC	137.36	118.27	0.861	182	0.11	179.666	154.842	0.862	118.27	137.36	201.1	217.1	133.3859235	149.3172559	176.2990613	210.0148478	M7_p20	1.257142857	2.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.111	182	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.51865861	sgMsh2	cell line
chr2	87544785	87544785	C	T	ENSMUST00000102624.1	NA	ENSMUSG00000075156	missense	G/E	253	Olfr1128	ENSMUST00000102624.1:c.758G>A	ENSMUSP00000099684.1:p.Gly253Glu	H-2-Kb	9	6	6	VAIFHETLF	VAIFHGTLF	SMM	107.179	238.292	2.223	325	0.126	137.075	240.071	1.751	241.85	156.05	323.1	366.8	238.292295	107.1790739	225.553723	118.1000278	M7_p20	0.928571429	0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.142	325	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.663509213	sgMsh2	cell line
chr2	86413389	86413389	A	G	ENSMUST00000099889.1	NA	ENSMUSG00000075185	missense	I/T	221	Olfr1061	ENSMUST00000099889.1:c.662T>C	ENSMUSP00000097474.1:p.Ile221Thr	H-2-Kb	9	4	8	VIGSYLLTL	VIGSYLLIL	SMM	122.211	136.493	1.117	215	0.177	152.006	309.51	2.036	430.98	165.99	438.2	144.7	136.4928808	122.2109162	188.039895	159.312554	M7_p20	1.171428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.182	215	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.850413217	sgMsh2	cell line
chr2	76713049	76713049	T	C	ENSMUST00000111846.8	5	ENSMUSG00000051747	missense	T/A	31452	Ttn	ENSMUST00000111846.8:c.94354A>G	ENSMUSP00000107477.2:p.Thr31452Ala	H-2-Kb	9	11	1	AAPEYYAPE	TAPEYYAPE	NetMHC	172.14	138.74	0.806	168	0.232	194.053	159.64	0.823	138.74	172.14	746	697.8	170.2589693	200.4979793	149.021867	187.6074152	M7_p20	-1.571428571	-0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.243	168	0	0	NA	2qC3	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr2	84950115	84950115	A	G	ENSMUST00000090726.5	1	ENSMUSG00000027074	missense	I/M	304	Slc43a3	ENSMUST00000090726.5:c.912A>G	ENSMUSP00000088227.5:p.Ile304Met	H-2-Kb	9	9	3	SIMQLWHYL	SIIQLWHYL	NetMHCpan	84.8	103.9	1.225	531	0.173	277.551	298.338	1.075	197.55	186.03	103.9	84.8	399.1259819	369.0710667	402.0221668	382.1641989	M7_p20	0.085714286	0.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.164	531	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.766306415	sgMsh2	cell line
chr2	52105483	52105483	C	T	ENSMUST00000112693.9	5	ENSMUSG00000036202	missense	L/F	905	Rif1	ENSMUST00000112693.9:c.2713C>T	ENSMUSP00000108313.2:p.Leu905Phe	H-2-Kb	9	3	9	VACLQFSYF	VACLQFSYL	NetMHC	191.1	33.73	0.177	209	0.335	209.082	96.414	0.461	33.73	191.1	75	428	127.0895963	214.3433431	117.8284053	203.8215031	M7_p20	0.9	1.542857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.333	209	0	0	NA	2qC1.1	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr2	87418564	87418564	CA	C	ENSMUST00000054974.1	NA	ENSMUSG00000043274	FS	Q/X	172	Olfr1123	ENSMUST00000054974.1:c.517del	ENSMUSP00000058786.1:p.Thr173HisfsTer35	H-2-Kb	9	15	0	FSLCLFVAL	NA	SMMPMBEC	192.42	NA	NA	491	0.153	206.906	NA	NA	NA	193.97	NA	286.4	NA	219.8416627	NA	192.4199068	M7_p20	3.242857143	3.242857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.151	491	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.705562614	sgMsh2	cell line
chr2	88070610	88070610	T	C	ENSMUST00000215268.1	5	ENSMUSG00000075137	missense	I/M	257	Olfr1163	ENSMUST00000215268.1:c.771A>G	ENSMUSP00000149399.1:p.Ile257Met	H-2-Kb	9	4	8	ITIFHGTML	ITIFHGTIL	NetMHCpan	99.3	211.2	2.127	337	0.181	218.84	396.307	1.811	552.76	196.55	211.2	99.3	448.8590645	348.4255546	343.7557727	241.1293081	M7_p20	1.242857143	1.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.192	337	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	2	0.897139218	sgMsh2	cell line
chr2	86923173	86923173	A	G	ENSMUST00000111574.2	3	ENSMUSG00000075169	missense	Y/H	120	Olfr1098	ENSMUST00000111574.2:c.358T>C	ENSMUSP00000107200.1:p.Tyr120His	H-2-Kb	9	9	3	MAHDRYVAI	MAYDRYVAI	SMMPMBEC	181.656	33.439	0.184	499	0.132	201.4	30.259	0.15	27.08	200.2	14.4	202.6	39.27443988	223.4138023	33.43874735	181.6561058	M7_p20	-0.285714286	-0.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.128	499	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.598092812	sgMsh2	cell line
chr2	86509001	86509001	G	T	ENSMUST00000076263.1	NA	ENSMUSG00000060742	missense	G/C	181	Olfr1076	ENSMUST00000076263.1:c.541G>T	ENSMUSP00000075612.1:p.Gly181Cys	H-2-Kb	9	4	8	ISHFYCDCL	ISHFYCDGL	NetMHC	209.95	51.38	0.245	400	0.13	234.051	114.31	0.488	51.38	209.95	61.8	252.7	206.1151905	335.8226621	166.8207233	215.4021332	M7_p20	0.514285714	0.514285714	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.126	400	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.588747612	sgMsh2	cell line
chr2	87418564	87418564	CA	C	ENSMUST00000054974.1	NA	ENSMUSG00000043274	FS	Q/X	172	Olfr1123	ENSMUST00000054974.1:c.517del	ENSMUSP00000058786.1:p.Thr173HisfsTer35	H-2-Kb	9	37	0	SNLLVVTHL	NA	NetMHCpan	181.8	NA	NA	491	0.153	482.157	NA	NA	NA	214.23	NA	181.8	NA	750.0841699	NA	755.5270188	M7_p20	2.271428571	2.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.151	491	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.705562614	sgMsh2	cell line
chr2	84950115	84950115	A	G	ENSMUST00000090726.5	1	ENSMUSG00000027074	missense	I/M	304	Slc43a3	ENSMUST00000090726.5:c.912A>G	ENSMUSP00000088227.5:p.Ile304Met	H-2-Kb	9	10	2	IMQLWHYLF	IIQLWHYLF	SMM	204.226	457.204	2.239	531	0.173	253.849	513.192	2.022	403.83	232.75	1346.5	723	457.2039776	204.225515	569.1804832	274.9476424	M7_p20	0.214285714	0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.164	531	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.766306415	sgMsh2	cell line
chr2	87544785	87544785	C	T	ENSMUST00000102624.1	NA	ENSMUSG00000075156	missense	G/E	253	Olfr1128	ENSMUST00000102624.1:c.758G>A	ENSMUSP00000099684.1:p.Gly253Glu	H-2-Kb	9	5	7	AVAIFHETL	AVAIFHGTL	NetMHCpan	127.7	86.7	0.679	325	0.126	381.216	222.467	0.584	104.33	255.15	86.7	127.7	356.5414284	514.1738673	340.6042008	507.2826396	M7_p20	0.785714286	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.142	325	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.663509213	sgMsh2	cell line
chr2	87949574	87949574	A	G	ENSMUST00000216191.1	5	ENSMUSG00000075144	missense	F/L	220	Olfr1156	ENSMUST00000216191.1:c.658T>C	ENSMUSP00000151183.1:p.Phe220Leu	H-2-Kb	9	3	9	VIIFTSYLL	VIIFTSYLF	SMM	216.825	365.687	1.687	466	0.129	325.71	576.299	1.769	422.72	286.02	1392	365.4	365.6874028	216.825322	729.8775406	421.9393213	M7_p20	1.728571429	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.125	466	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.584075012	sgMsh2	cell line
chr2	44752203	44752203	A	G	ENSMUST00000112810.7	1	ENSMUSG00000036890	missense	V/A	122	Gtdc1	ENSMUST00000112810.7:c.365T>C	ENSMUSP00000108429.1:p.Val122Ala	H-2-Kb	9	11	1	AVFNSSFNM	VVFNSSFNM	NetMHCpan	229.4	64.8	0.282	137	0.226	379.434	130.193	0.343	103.31	292.09	64.8	229.4	157.0760603	466.7775928	232.9431801	643.0577846	M7_p20	-0.157142857	0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.232	137	0	0	NA	2qB	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr2	83803240	83803240	A	T	ENSMUST00000028499.10	1	ENSMUSG00000027087	missense	M/L	1014	Itgav	ENSMUST00000028499.10:c.3040A>T	ENSMUSP00000028499.4:p.Met1014Leu	H-2-Kb	9	5	7	VFVMYRLGF	VFVMYRMGF	NetMHC	295.03	169.93	0.576	266	0.147	362.064	348.471	0.962	169.93	295.03	481.2	705.8	331.9785319	354.0870144	364.9639766	370.0411313	M7_p20	0.928571429	1.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.148	266	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.691544814	sgMsh2	cell line
chr2	87746294	87746294	A	G	ENSMUST00000214723.1	5	ENSMUSG00000068817	missense	I/V	33	Olfr1140	ENSMUST00000214723.1:c.97A>G	ENSMUSP00000149706.1:p.Ile33Val	H-2-Kb	9	7	5	ISFLVIYLI	ISFLIIYLI	NetMHC	298.21	282.86	0.949	480	0.167	404.398	332.259	0.822	282.86	298.21	420.4	462.2	319.9705442	394.5572246	344.5482116	414.2380608	M7_p20	3.185714286	3.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.169	480	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.789669416	sgMsh2	cell line
chr2	84612086	84612086	CT	C	ENSMUST00000189772.1	5	ENSMUSG00000101645	FS	K/X	634	Gm28635	ENSMUST00000189772.1:c.1901del	ENSMUSP00000141166.1:p.Lys634SerfsTer48	H-2-Kb	9	22	0	ISLKELVLL	NA	NetMHCpan	270.3	NA	NA	164	0.177	297.293	NA	NA	NA	304.61	NA	270.3	NA	295.876178	NA	298.7101638	M7_p20	1.714285714	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.176	164	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.822377616	sgMsh2	cell line
chr2	85799973	85799973	T	A	ENSMUST00000217410.2	3	ENSMUSG00000075209	missense	Q/L	99	Olfr1016	ENSMUST00000217410.2:c.296A>T	ENSMUSP00000149631.1:p.Gln99Leu	H-2-Kb	9	9	3	VALFFFSAG	VAQFFFSAG	SMMPMBEC	123.381	326.024	2.642	364	0.132	160.728	366.586	2.281	661.85	317.36	395.8	189.9	337.3727491	131.5558	326.0243217	123.381487	M7_p20	1.828571429	2.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.148	364	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.691544814	sgMsh2	cell line
chr2	88070610	88070610	T	C	ENSMUST00000215268.1	5	ENSMUSG00000075137	missense	I/M	257	Olfr1163	ENSMUST00000215268.1:c.771A>G	ENSMUSP00000149399.1:p.Ile257Met	H-2-Kb	9	3	9	AITIFHGTM	AITIFHGTI	NetMHCpan	325.5	543	1.668	337	0.181	486.627	930.513	1.912	796.27	349.16	543	325.5	1330.791444	704.8715793	1064.755765	624.0939895	M7_p20	0.6	1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.192	337	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	2	0.897139218	sgMsh2	cell line
chr2	87418564	87418564	CA	C	ENSMUST00000054974.1	NA	ENSMUSG00000043274	FS	Q/X	172	Olfr1123	ENSMUST00000054974.1:c.517del	ENSMUSP00000058786.1:p.Thr173HisfsTer35	H-2-Kb	9	7	6	VVIGQHTRF	VVIGQTYQI	SMM	355.721	1040.184	2.924	491	0.153	366.693	1316.506	3.59	1587.69	376.73	2075.4	782.4	1040.183595	355.7214058	1045.321782	356.6563823	M7_p20	-0.714285714	0.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.151	491	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.705562614	sgMsh2	cell line
chr2	85868829	85868829	C	CA	ENSMUST00000054736.3	NA	ENSMUSG00000057761	FS	P/PX	79	Olfr1022	ENSMUST00000054736.3:c.239dup	ENSMUSP00000059312.3:p.Asn80LysfsTer32	H-2-Kb	9	28	0	WMLHTVSPL	NA	SMM	450.931	NA	NA	996	0.148	489.579	NA	NA	NA	460.06	NA	635.3	NA	450.9309038	NA	519.0987702	M7_p20	0.785714286	0.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.142	996	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.663509213	sgMsh2	cell line
chr2	87656102	87656102	A	AT	ENSMUST00000135875.3	5	ENSMUSG00000111747	FS	M/NX	273	Olfr1134	ENSMUST00000135875.3:c.817dup	ENSMUSP00000150837.1:p.Met273AsnfsTer23	H-2-Kb	9	20	0	DSYVKPTYL	NA	SMM	254.748	NA	NA	360	0.172	435.96	NA	NA	NA	486.22	NA	545.4	NA	254.7475407	NA	385.7003207	M7_p20	-0.114285714	-0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.168	360	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.784996816	sgMsh2	cell line
chr2	86170996	86170996	C	T	ENSMUST00000215171.1	5	ENSMUSG00000075200	missense	A/T	274	Olfr1044	ENSMUST00000215171.1:c.820G>A	ENSMUSP00000150199.1:p.Ala274Thr	H-2-Kb	9	10	2	MTSVFYTVI	MASVFYTVI	NetMHCpan	104.1	93.9	0.902	374	0.152	488.601	366.17	0.749	403.78	514.62	93.9	104.1	367.3753391	505.9527957	364.9639766	471.2485208	M7_p20	1.842857143	1.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.155	374	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.724253014	sgMsh2	cell line
chr2	85992650	85992650	A	G	ENSMUST00000216807.1	5	ENSMUSG00000043267	missense	T/A	278	Olfr1031	ENSMUST00000216807.1:c.832A>G	ENSMUSP00000149225.1:p.Thr278Ala	H-2-Kb	9	6	6	VAVFYATVI	VAVFYTTVI	NetMHCpan	175.4	167.6	0.956	182	0.11	483.786	359.921	0.744	537.74	595.09	167.6	175.4	405.6112574	529.7976163	314.2317036	437.7740356	M7_p20	2.214285714	2.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.111	182	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.51865861	sgMsh2	cell line
chr2	90139121	90139121	A	C	ENSMUST00000215153.2	2	ENSMUSG00000075066	missense	V/G	6	Olfr32	ENSMUST00000215153.2:c.17T>G	ENSMUSP00000150246.1:p.Val6Gly	H-2-Db	9	1	6	MAFVNGTEL	MAFVNVTEL	NetMHCpan	5.5	5.1	0.927	473	0.133	14.228	13.219	0.929	9.55	8.2	5.1	5.5	20.21249847	23.04729708	16.88768035	20.25676081	M7_p20	0.385714286	0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.137	473	0	0	NA	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.640146213	sgMsh2	cell line
chr2	89055070	89055070	A	T	ENSMUST00000215048.1	5	ENSMUSG00000075105	missense	Y/N	119	Olfr1218	ENSMUST00000215048.1:c.355T>A	ENSMUSP00000149171.1:p.Tyr119Asn	H-2-Db	9	7	5	AAMANDRYV	AAMAYDRYV	NetMHCpan	16.4	1992.3	121.482	393	0.214	26.573	2444.88	92.006	9677.22	16.45	1992.3	16.4	2150.898913	36.69610755	2738.861051	50.88268262	M7_p20	-0.7	-0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.213	393	0	0	NA	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	2	0.99526382	sgMsh2	cell line
chr2	126650133	126650133	A	G	ENSMUST00000110425.8	1	ENSMUSG00000027361	missense	V/A	211	Gabpb1	ENSMUST00000110425.8:c.632T>C	ENSMUSP00000106055.2:p.Val211Ala	H-2-Db	9	10	2	SALATLAAL	SVLATLAAL	NetMHCpan	259.6	3037.8	11.702	141	0.206	445.915	3062.696	6.868	5743.24	422.4	3037.8	259.6	3087.592661	482.636319	2996.194483	469.4290913	M7_p20	2.3	2.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.224	141	0	0	NA	2qF1	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr2	130244507	130244507	A	G	ENSMUST00000077988.7	1	ENSMUSG00000060332	missense	R/G	567	Tmc2	ENSMUST00000077988.7:c.1699A>G	ENSMUSP00000077139.1:p.Arg567Gly	H-2-Kb	8	5	7	VGIEFMGL	VGIEFMRL	NetMHC	3.92	3.39	0.865	114	0.202	11.366	7.976	0.702	3.39	3.92	6.9	7.5	9.051905263	15.23140619	10.65957771	18.4391119	M7_p20	1.242857143	1.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.202	114	0	0	NA	2qF1	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	0.943865219	sgMsh2	cell line
chr2	91167871	91167871	A	C	ENSMUST00000066473.11	5	ENSMUSG00000040687	missense	S/A	635	Madd	ENSMUST00000066473.11:c.1903T>G	ENSMUSP00000069350.5:p.Ser635Ala	H-2-Kb	8	6	6	SSSSYASL	SSSSYSSL	NetMHC	8.84	24.5	2.771	335	0.119	25.674	58.52	2.279	24.5	8.84	55.7	24.2	61.33946729	27.14813499	66.94836882	28.16696149	M7_p20	0.157142857	0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.124	335	0	0	NA	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.579402411	sgMsh2	cell line
chr2	88402653	88402653	CT	C	ENSMUST00000213157.1	5	ENSMUSG00000075127	FS	S/X	94	Olfr1179	ENSMUST00000213157.1:c.280del	ENSMUSP00000151174.1:p.Ser94AlafsTer22	H-2-Kb	8	7	5	ISYTAAWL	ISYTSCMA	NetMHC	9	378.66	42.073	237	0.173	12.197	394.013	32.305	378.66	9	387.4	15	400.6268017	11.60753495	401.5503419	12.78615603	M7_p20	0.528571429	0.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.187	237	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	2	0.873776217	sgMsh2	cell line
chr2	91606329	91606329	G	T	ENSMUST00000111338.9	1	ENSMUSG00000040549	missense	Q/H	1591	Ckap5	ENSMUST00000111338.9:c.4773G>T	ENSMUSP00000106970.3:p.Gln1591His	H-2-Kb	8	7	5	ATFMHLRL	ATFMQLRL	NetMHCpan	9.6	49.4	5.146	578	0.151	20.833	103.303	4.959	131.56	16.62	49.4	9.6	99.0238939	28.29697428	107.5820957	25.04609364	M7_p20	0.557142857	0.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.153	578	0	0	NA	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.714907814	sgMsh2	cell line
chr2	91606329	91606329	G	T	ENSMUST00000111338.9	1	ENSMUSG00000040549	missense	Q/H	1591	Ckap5	ENSMUST00000111338.9:c.4773G>T	ENSMUSP00000106970.3:p.Gln1591His	H-2-Kb	8	5	7	LIATFMHL	LIATFMQL	NetMHC	24.58	57.14	2.325	578	0.151	54.236	83.255	1.535	57.14	24.58	66.8	33.7	99.71029474	74.77217263	110.5961477	86.24620612	M7_p20	1.557142857	1.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.153	578	0	0	NA	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.714907814	sgMsh2	cell line
chr2	89112332	89112332	A	G	ENSMUST00000217635.1	5	ENSMUSG00000075102	missense	F/S	60	Olfr1221	ENSMUST00000217635.1:c.179T>C	ENSMUSP00000149330.1:p.Phe60Ser	H-2-Kb	8	11	1	SFLVFLSL	FFLVFLSL	SMM	27.399	49.63	1.811	790	0.127	36.332	140.561	3.869	223.08	39.11	800.4	69.8	49.62951144	27.39933359	58.04168341	33.55366776	M7_p20	2.914285714	2.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.127	790	0	0	NA	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.593420212	sgMsh2	cell line
chr2	94362443	94362443	T	C	ENSMUST00000111238.7	5	ENSMUSG00000027194	missense	Q/R	654	Ttc17	ENSMUST00000111238.7:c.1961A>G	ENSMUSP00000106869.1:p.Gln654Arg	H-2-Kb	8	8	4	VQYRDIPL	VQYQDIPL	NetMHC	50.99	98.61	1.934	135	0.104	55.622	83.245	1.497	98.61	50.99	294	132.5	66.18201718	55.94225905	67.8797134	55.30189331	M7_p20	-0.871428571	-0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.099	135	0	0	NA	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.462587409	sgMsh2	cell line
chr2	91720390	91720390	C	T	ENSMUST00000090608.5	1	ENSMUSG00000027243	missense	T/I	236	Harbi1	ENSMUST00000090608.5:c.707C>T	ENSMUSP00000088098.5:p.Thr236Ile	H-2-Kb	8	6	6	RSWLLIPL	RSWLLTPL	SMMPMBEC	60.777	52.935	0.871	358	0.254	69.458	52.367	0.754	28.24	65.34	51.8	103.4	66.64076901	73.57664827	52.93464441	60.77710368	M7_p20	1.8	1.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.259	358	0	0	NA	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr2	89193725	89193725	A	G	ENSMUST00000216445.1	5	ENSMUSG00000075097	missense	V/A	103	Olfr1226	ENSMUST00000216445.1:c.308T>C	ENSMUSP00000150215.1:p.Val103Ala	H-2-Kb	8	10	2	AAHFFTGM	AVHFFTGM	NetMHCpan	21.6	24.4	1.13	703	0.134	202.001	204.404	1.012	108.38	79.11	24.4	21.6	365.3759857	359.5340277	300.4277187	324.8927349	M7_p20	0.714285714	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.141	703	0	0	NA	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.658836613	sgMsh2	cell line
chr2	89112332	89112332	A	G	ENSMUST00000217635.1	5	ENSMUSG00000075102	missense	F/S	60	Olfr1221	ENSMUST00000217635.1:c.179T>C	ENSMUSP00000149330.1:p.Phe60Ser	H-2-Kb	8	6	6	GSPMYSFL	GSPMYFFL	NetMHC	84.6	125.97	1.489	790	0.127	108.775	120.491	1.108	125.97	84.6	88.1	100.4	167.0090478	167.3940435	115.0111643	117.1493815	M7_p20	0.571428571	0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.127	790	0	0	NA	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.593420212	sgMsh2	cell line
chr2	88423567	88423567	G	T	ENSMUST00000213190.1	5	ENSMUSG00000075125	missense	H/N	153	Olfr1181	ENSMUST00000213190.1:c.457C>A	ENSMUSP00000150939.1:p.His153Asn	H-2-Kb	8	9	3	VANSFPQV	VAHSFPQV	NetMHC	106.43	30.02	0.282	468	0.113	136.536	77.757	0.569	30.02	106.43	52.3	223.2	107.830098	129.9391436	103.2143305	143.1330745	M7_p20	-0.085714286	-0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.128	468	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.598092812	sgMsh2	cell line
chr2	89112330	89112330	A	G	ENSMUST00000217635.1	5	ENSMUSG00000075102	missense	F/L	61	Olfr1221	ENSMUST00000217635.1:c.181T>C	ENSMUSP00000149330.1:p.Phe61Leu	H-2-Kb	8	5	7	GSPMYFLL	GSPMYFFL	NetMHCpan	74.2	88.1	1.187	791	0.162	138.779	120.491	0.868	125.97	112.84	88.1	74.2	167.0090478	251.6170116	115.0111643	164.7175978	M7_p20	1.228571429	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.168	791	0	0	NA	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.784996816	sgMsh2	cell line
chr2	132240580	132240580	A	G	ENSMUST00000110164.7	2	ENSMUSG00000027341	missense	F/S	90	Tmem230	ENSMUST00000110164.7:c.269T>C	ENSMUSP00000105793.1:p.Phe90Ser	H-2-Kb	8	11	1	SLPGFYHL	FLPGFYHL	NetMHCpan	98.2	522.1	5.317	179	0.201	164.475	459.527	2.794	694.44	114.79	522.1	98.2	387.9180607	214.1608096	396.9538331	229.4774419	M7_p20	0.557142857	0.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.192	179	0	0	NA	2qF2	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	0.897139218	sgMsh2	cell line
chr2	119139420	119139420	GT	G	ENSMUST00000094695.11	1	ENSMUSG00000070730	FS	T/X	387	Rmdn3	ENSMUST00000094695.11:c.1159del	ENSMUSP00000092283.5:p.Thr387ArgfsTer46	H-2-Kb	8	37	0	YSQDFQKL	NA	SMM	227.898	NA	NA	93	0.28	263.57	NA	NA	NA	233.55	NA	302.9	NA	227.8977303	NA	293.5891489	M7_p20	-1.228571429	-1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.289	93	0	0	NA	2qE5	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr2	121343482	121343482	C	A	ENSMUST00000052029.9	1	ENSMUSG00000033526	missense	G/V	386	Ppip5k1	ENSMUST00000052029.9:c.1157G>T	ENSMUSP00000057632.3:p.Gly386Val	H-2-Kb	8	9	3	TSVTMMEL	TSGTMMEL	NetMHC	281.07	2080.14	7.401	258	0.163	498.949	1674.977	3.357	2080.14	281.07	3652.7	480.6	1269.813676	529.3464441	1116.194813	517.2970479	M7_p20	0.971428571	0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.18	258	0	0	NA	2qE5	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	0.841068017	sgMsh2	cell line
chr2	88831221	88831221	G	A	ENSMUST00000215929.1	3	ENSMUSG00000057447	missense	G/R	35	Olfr1205	ENSMUST00000215929.1:c.103G>A	ENSMUSP00000150206.1:p.Gly35Arg	H-2-Kb	8	7	5	VFYMRTVV	VFYMGTVV	NetMHC	293.71	1002.56	3.413	393	0.153	397.581	650.115	1.635	1002.56	293.71	759.8	379.5	540.4306853	424.3654321	468.5328006	415.6616909	M7_p20	0.942857143	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.154	393	0	0	NA	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.719580414	sgMsh2	cell line
chr2	89609883	89609883	G	T	ENSMUST00000111532.3	5	ENSMUSG00000075081	missense	T/N	73	Olfr1247	ENSMUST00000111532.3:c.218C>A	ENSMUSP00000107157.1:p.Thr73Asn	H-2-Kb	8	7	5	AVYSNAIL	AVYSTAIL	NetMHCpan	181	103.3	0.571	815	0.118	222.81	159.389	0.715	111.41	306.87	103.3	181	218.1423563	229.4774419	207.3671696	216.1424152	M7_p20	1.242857143	1.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.119	815	0	0	NA	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.556039411	sgMsh2	cell line
chr2	89097028	89097028	AT	A	ENSMUST00000213288.1	5	ENSMUSG00000101480	FS	M/X	300	Olfr1220	ENSMUST00000213288.1:c.898del	ENSMUSP00000150812.1:p.Met300CysfsTer18	H-2-Kb	8	20	0	ITIKILYL	NA	NetMHCpan	103.1	NA	NA	341	0.185	298.674	NA	NA	NA	320.82	NA	103.1	NA	359.5340277	NA	276.528565	M7_p20	1.528571429	1.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.182	341	0	0	NA	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.850413217	sgMsh2	cell line
chr2	110265593	110265593	T	A	ENSMUST00000046233.8	1	ENSMUSG00000041660	missense	N/I	342	Bbox1	ENSMUST00000046233.8:c.1025A>T	ENSMUSP00000046302.2:p.Asn342Ile	H-2-Kb	8	7	5	ITFDIWRL	ITFDNWRL	NetMHCpan	54.2	79.3	1.463	161	0.161	96.512	87.498	0.907	262.12	458.63	79.3	54.2	90.51905263	105.3755853	84.47729517	87.64759423	M7_p20	0.214285714	0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.178	161	0	0	NA	2qE3	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	0.831722816	sgMsh2	cell line
chr2	122283210	122283210	A	C	ENSMUST00000053734.5	2	ENSMUSG00000068452	missense	I/S	1202	Duox2	ENSMUST00000053734.5:c.3605T>G	ENSMUSP00000050314.5:p.Ile1202Ser	H-2-Kb	8	5	7	VLYVLISI	VLYVLIII	NetMHCpan	317.2	2173.2	6.851	145	0.241	382.138	1629.877	4.265	2099	476.4	2173.2	317.2	1160.753495	418.5429201	1129.11974	345.7323355	M7_p20	2.671428571	2.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	145	0	0	NA	2qE5	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr2	89112330	89112330	A	G	ENSMUST00000217635.1	5	ENSMUSG00000075102	missense	F/L	61	Olfr1221	ENSMUST00000217635.1:c.181T>C	ENSMUSP00000149330.1:p.Phe61Leu	H-2-Kb	8	10	2	FLLVFLSL	FFLVFLSL	SMMPMBEC	129.342	58.042	0.449	791	0.162	335.362	140.561	0.419	223.08	524.93	800.4	653.9	49.62951144	145.794117	58.04168341	129.3421274	M7_p20	3.057142857	3.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.168	791	0	0	NA	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.784996816	sgMsh2	cell line
chr2	89112330	89112330	A	G	ENSMUST00000217635.1	5	ENSMUSG00000075102	missense	F/L	61	Olfr1221	ENSMUST00000217635.1:c.181T>C	ENSMUSP00000149330.1:p.Phe61Leu	H-2-Kb	8	8	4	MYFLLVFL	MYFFLVFL	SMM	163.584	183.544	1.122	791	0.162	438.111	328.176	0.749	702.49	706.5	452.3	748.7	183.5439188	163.5836898	204.0515979	169.7227266	M7_p20	2.842857143	2.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.168	791	0	0	NA	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.784996816	sgMsh2	cell line
chr2	111449611	111449611	T	C	ENSMUST00000075390.1	NA	ENSMUSG00000095586	missense	M/T	157	Olfr1287	ENSMUST00000075390.1:c.470T>C	ENSMUSP00000074850.1:p.Met157Thr	H-2-Kb	8	5	7	IGFIHATS	IGFIHAMS	SMM	100.401	88.459	0.881	1034	0.275	214.062	182.421	0.852	651.86	981.33	235.5	283	88.45858744	100.4014535	129.3421274	145.1242539	M7_p20	0.571428571	1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.278	1034	0	0	NA	2qE3	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr2	88929956	88929956	C	T	ENSMUST00000215205.1	5	ENSMUSG00000075112	missense	D/N	120	Olfr1211	ENSMUST00000215205.1:c.358G>A	ENSMUSP00000150571.1:p.Asp120Asn	H-2-Kb	9	8	4	MAYNRYVAI	MAYDRYVAI	NetMHCpan	10.6	14.4	1.358	541	0.131	22.873	30.259	1.323	27.08	15.46	14.4	10.6	39.27443988	37.76678362	33.43874735	30.28656361	M7_p20	-0.014285714	-0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.132	541	0	0	NA	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.616783212	sgMsh2	cell line
chr2	132240580	132240580	A	G	ENSMUST00000110164.7	2	ENSMUSG00000027341	missense	F/S	90	Tmem230	ENSMUST00000110164.7:c.269T>C	ENSMUSP00000105793.1:p.Phe90Ser	H-2-Kb	9	10	2	VSLPGFYHL	VFLPGFYHL	NetMHC	22.77	187.13	8.218	179	0.201	93.901	246.108	2.621	187.13	22.77	200.4	30	291.8166046	157.8010905	341.3893746	169.9221522	M7_p20	0.557142857	0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.192	179	0	0	NA	2qF2	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	0.897139218	sgMsh2	cell line
chr2	111537918	111537918	C	G	ENSMUST00000208675.2	2	ENSMUSG00000109547	missense	V/L	124	Olfr1294	ENSMUST00000208675.2:c.370G>C	ENSMUSP00000146438.1:p.Val124Leu	H-2-Kb	9	5	7	MAYDRYLAI	MAYDRYVAI	NetMHCpan	14.8	14.4	0.973	499	0.281	34.154	30.259	0.886	27.08	30.53	14.4	14.8	39.27443988	39.82080176	33.43874735	37.77896015	M7_p20	-0.071428571	-0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.263	499	0	0	NA	2qE3	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr2	89112332	89112332	A	G	ENSMUST00000217635.1	5	ENSMUSG00000075102	missense	F/S	60	Olfr1221	ENSMUST00000217635.1:c.179T>C	ENSMUSP00000149330.1:p.Phe60Ser	H-2-Kb	9	11	1	SFLVFLSLL	FFLVFLSLL	NetMHC	33.6	120.88	3.598	790	0.127	86.997	149.201	1.715	120.88	33.6	1133	105.9	104.9808295	68.09418088	177.521108	120.5729815	M7_p20	3.057142857	3.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.127	790	0	0	NA	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.593420212	sgMsh2	cell line
chr2	111537918	111537918	C	G	ENSMUST00000208675.2	2	ENSMUSG00000109547	missense	V/L	124	Olfr1294	ENSMUST00000208675.2:c.370G>C	ENSMUSP00000146438.1:p.Val124Leu	H-2-Kb	9	3	9	VAMAYDRYL	VAMAYDRYV	NetMHC	34.74	105.62	3.04	499	0.281	119.516	324.279	2.713	105.62	34.74	254	63.6	394.5572246	175.4324789	422.9119919	188.9078477	M7_p20	-0.442857143	0.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.263	499	0	0	NA	2qE3	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr2	112130499	112130499	A	G	ENSMUST00000099596.1	NA	ENSMUSG00000109801	missense	I/T	106	Olfr1316	ENSMUST00000099596.1:c.317T>C	ENSMUSP00000097191.1:p.Ile106Thr	H-2-Kb	9	5	7	VIQIFSTHV	VIQIFSIHV	NetMHC	47.46	117.78	2.482	599	0.129	217.784	332.011	1.524	117.78	47.46	328.2	117.8	335.8226621	317.7678825	471.2485208	428.7952838	M7_p20	0.471428571	1.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.129	599	0	0	NA	2qE3	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	0.602765412	sgMsh2	cell line
chr2	89193725	89193725	A	G	ENSMUST00000216445.1	5	ENSMUSG00000075097	missense	V/A	103	Olfr1226	ENSMUST00000216445.1:c.308T>C	ENSMUSP00000150215.1:p.Val103Ala	H-2-Kb	9	9	3	FAAHFFTGM	FAVHFFTGM	NetMHCpan	36.5	28.8	0.789	703	0.134	93.488	72.967	0.78	31.09	59.3	28.8	36.5	114.8444468	127.6762152	134.3538141	173.0812408	M7_p20	0.714285714	1.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.141	703	0	0	NA	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.658836613	sgMsh2	cell line
chr2	89112332	89112332	A	G	ENSMUST00000217635.1	5	ENSMUSG00000075102	missense	F/S	60	Olfr1221	ENSMUST00000217635.1:c.179T>C	ENSMUSP00000149330.1:p.Phe60Ser	H-2-Kb	9	10	2	YSFLVFLSL	YFFLVFLSL	NetMHCpan	60.7	1055.3	17.386	790	0.127	104.309	382.366	3.666	470.12	63.37	1055.3	60.7	268.6024688	145.2479461	294.6117067	146.6391721	M7_p20	2.914285714	2.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.127	790	0	0	NA	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.593420212	sgMsh2	cell line
chr2	126650133	126650133	A	G	ENSMUST00000110425.8	1	ENSMUSG00000027361	missense	V/A	211	Gabpb1	ENSMUST00000110425.8:c.632T>C	ENSMUSP00000106055.2:p.Val211Ala	H-2-Kb	9	10	2	SALATLAAL	SVLATLAAL	NetMHC	81.99	93.77	1.144	141	0.206	308.925	330.95	1.071	93.77	81.99	219.2	224.2	442.7004873	393.6497682	628.4200023	543.5631415	M7_p20	2.3	2.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.224	141	0	0	NA	2qF1	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr2	110265593	110265593	T	A	ENSMUST00000046233.8	1	ENSMUSG00000041660	missense	N/I	342	Bbox1	ENSMUST00000046233.8:c.1025A>T	ENSMUSP00000046302.2:p.Asn342Ile	H-2-Kb	9	7	5	ITFDIWRLL	ITFDNWRLL	NetMHCpan	45.4	49.9	1.099	161	0.161	134.553	91.818	0.682	47.54	89.53	49.9	45.4	138.3916859	195.4834522	133.7365144	179.5767056	M7_p20	0.857142857	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.178	161	0	0	NA	2qE3	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	0.831722816	sgMsh2	cell line
chr2	91606329	91606329	G	T	ENSMUST00000111338.9	1	ENSMUSG00000040549	missense	Q/H	1591	Ckap5	ENSMUST00000111338.9:c.4773G>T	ENSMUSP00000106970.3:p.Gln1591His	H-2-Kb	9	7	5	ATFMHLRLI	ATFMQLRLI	NetMHCpan	83	452.8	5.455	578	0.151	187.728	640.476	3.412	370.21	103.03	452.8	83	828.1518951	283.863792	897.9455448	272.4269072	M7_p20	1.3	1.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.153	578	0	0	NA	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.714907814	sgMsh2	cell line
chr2	89193725	89193725	A	G	ENSMUST00000216445.1	5	ENSMUSG00000075097	missense	V/A	103	Olfr1226	ENSMUST00000216445.1:c.308T>C	ENSMUSP00000150215.1:p.Val103Ala	H-2-Kb	9	5	7	MTQLFAAHF	MTQLFAVHF	NetMHC	124.5	556.39	4.469	703	0.134	451.112	924.262	2.049	556.39	124.5	815.5	185.9	1033.023021	716.3248211	1294.941055	955.5424822	M7_p20	0.9	1.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.141	703	0	0	NA	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.658836613	sgMsh2	cell line
chr2	88402653	88402653	CT	C	ENSMUST00000213157.1	5	ENSMUSG00000075127	FS	S/X	94	Olfr1179	ENSMUST00000213157.1:c.280del	ENSMUSP00000151174.1:p.Ser94AlafsTer22	H-2-Kb	9	14	0	LSFLPCISL	NA	NetMHC	146.85	NA	NA	237	0.173	216.149	NA	NA	NA	146.85	NA	174.6	NA	257.6973782	NA	291.9106903	M7_p20	2.142857143	2.142857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.187	237	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	2	0.873776217	sgMsh2	cell line
chr2	88831221	88831221	G	A	ENSMUST00000215929.1	3	ENSMUSG00000057447	missense	G/R	35	Olfr1205	ENSMUST00000215929.1:c.103G>A	ENSMUSP00000150206.1:p.Gly35Arg	H-2-Kb	9	4	8	IFLVFYMRT	IFLVFYMGT	SMM	120.534	150.699	1.25	393	0.153	141.147	167.653	1.188	146.16	151.3	1222.2	821.2	150.6988715	120.5341196	184.6077801	130.9935766	M7_p20	0.885714286	2.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.154	393	0	0	NA	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.719580414	sgMsh2	cell line
chr2	126459694	126459694	A	G	ENSMUST00000040128.11	5	ENSMUSG00000060131	missense	I/T	82	Atp8b4	ENSMUST00000040128.11:c.245T>C	ENSMUSP00000046444.5:p.Ile82Thr	H-2-Kb	9	6	6	TWFTTTVPL	TWFTTIVPL	SMM	134.62	133.386	0.991	264	0.261	173.938	143.61	0.826	148.82	157.22	138.4	194.4	133.3859235	134.6201283	175.4890407	190.6557905	M7_p20	1.014285714	1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.252	264	0	0	NA	2qF1	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr2	126459694	126459694	A	G	ENSMUST00000040128.11	5	ENSMUSG00000060131	missense	I/T	82	Atp8b4	ENSMUST00000040128.11:c.245T>C	ENSMUSP00000046444.5:p.Ile82Thr	H-2-Kb	9	3	9	SSLTWFTTT	SSLTWFTTI	NetMHC	177.03	22.12	0.125	264	0.261	294.724	95.436	0.324	22.12	177.03	21.6	222.8	186.2558834	433.6206938	168.7524163	366.6485738	M7_p20	0.414285714	0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.252	264	0	0	NA	2qF1	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr2	91284247	91284247	A	G	ENSMUST00000102594.10	1	ENSMUSG00000040591	missense	F/L	147	1110051M20Rik	ENSMUST00000102594.10:c.439T>C	ENSMUSP00000099654.4:p.Phe147Leu	H-2-Kb	9	8	4	QIQLYYSEF	QIQFYYSEF	SMM	177.873	191.034	1.074	203	0.118	233.567	248.13	1.062	224.46	181.21	352.1	442.3	191.0337056	177.8729877	271.8003427	285.9235978	M7_p20	-0.542857143	-0.3	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.128	203	0	0	NA	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.598092812	sgMsh2	cell line
chr2	119139420	119139420	GT	G	ENSMUST00000094695.11	1	ENSMUSG00000070730	FS	T/X	387	Rmdn3	ENSMUST00000094695.11:c.1159del	ENSMUSP00000092283.5:p.Thr387ArgfsTer46	H-2-Kb	9	45	0	DGYIFLSAI	NA	NetMHC	187.49	NA	NA	93	0.28	309.473	NA	NA	NA	187.49	NA	212.4	NA	406.5462879	NA	510.7989549	M7_p20	2.185714286	2.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.289	93	0	0	NA	2qE5	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr2	122283210	122283210	A	C	ENSMUST00000053734.5	2	ENSMUSG00000068452	missense	I/S	1202	Duox2	ENSMUST00000053734.5:c.3605T>G	ENSMUSP00000050314.5:p.Ile1202Ser	H-2-Kb	9	11	1	SIHGSYALI	IIHGSYALI	NetMHC	193.02	144.18	0.747	145	0.241	352.928	219.407	0.622	144.18	193.02	191.5	435.5	252.4120012	328.9349344	247.3147393	376.9207095	M7_p20	0.628571429	0.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	145	0	0	NA	2qE5	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr2	121348531	121348531	C	T	ENSMUST00000052029.9	1	ENSMUSG00000033526	missense	S/N	238	Ppip5k1	ENSMUST00000052029.9:c.713G>A	ENSMUSP00000057632.3:p.Ser238Asn	H-2-Kb	9	4	8	SVYSPESNV	SVYSPESSV	SMM	190.594	221.876	1.164	325	0.271	308.084	401.872	1.304	330.32	195.2	875.3	523.6	221.8758325	190.5943402	473.4237051	420.9688878	M7_p20	-1.042857143	-0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.292	325	0	0	NA	2qE5	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr2	91284247	91284247	A	G	ENSMUST00000102594.10	1	ENSMUSG00000040591	missense	F/L	147	1110051M20Rik	ENSMUST00000102594.10:c.439T>C	ENSMUSP00000099654.4:p.Phe147Leu	H-2-Kb	9	9	3	IQLYYSEFL	IQFYYSEFL	NetMHCpan	192.4	29.6	0.154	203	0.118	382.31	125.453	0.328	51.33	204.72	29.6	192.4	199.5767748	559.8993973	219.4067579	608.4851727	M7_p20	0.5	0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.128	203	0	0	NA	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.598092812	sgMsh2	cell line
chr2	89112332	89112332	A	G	ENSMUST00000217635.1	5	ENSMUSG00000075102	missense	F/S	60	Olfr1221	ENSMUST00000217635.1:c.179T>C	ENSMUSP00000149330.1:p.Phe60Ser	H-2-Kb	9	8	4	PMYSFLVFL	PMYFFLVFL	SMM	29.384	32.219	1.096	790	0.127	135.439	202.29	1.494	360.5	217.39	910.3	281.5	32.21884741	29.38393807	44.08085403	53.4872168	M7_p20	2.185714286	2.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.127	790	0	0	NA	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.593420212	sgMsh2	cell line
chr2	88896799	88896799	T	C	ENSMUST00000214297.1	5	ENSMUSG00000075114	missense	K/R	266	Olfr1208	ENSMUST00000214297.1:c.797A>G	ENSMUSP00000149695.1:p.Lys266Arg	H-2-Kb	9	11	1	RVFALFYTM	KVFALFYTM	NetMHCpan	58.6	48.3	0.824	579	0.138	255.728	205.981	0.805	183.87	220.98	48.3	58.6	228.091972	290.4758291	294.6117067	366.6485738	M7_p20	1.585714286	1.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.137	579	0	0	NA	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.640146213	sgMsh2	cell line
chr2	89112330	89112330	A	G	ENSMUST00000217635.1	5	ENSMUSG00000075102	missense	F/L	61	Olfr1221	ENSMUST00000217635.1:c.181T>C	ENSMUSP00000149330.1:p.Phe61Leu	H-2-Kb	9	10	2	FLLVFLSLL	FFLVFLSLL	NetMHC	229.34	120.88	0.527	791	0.162	325.814	149.201	0.458	120.88	229.34	1133	1179.6	104.9808295	272.9669078	177.521108	378.6604965	M7_p20	3.057142857	3.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.168	791	0	0	NA	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.784996816	sgMsh2	cell line
chr2	89112330	89112330	A	G	ENSMUST00000217635.1	5	ENSMUSG00000075102	missense	F/L	61	Olfr1221	ENSMUST00000217635.1:c.181T>C	ENSMUSP00000149330.1:p.Phe61Leu	H-2-Kb	9	5	7	GSPMYFLLV	GSPMYFFLV	NetMHCpan	143	135.5	0.948	791	0.162	298.693	265.97	0.89	211.97	244	135.5	143	319.9705442	357.3633412	346.9365057	353.3865369	M7_p20	1.942857143	1.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.168	791	0	0	NA	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.784996816	sgMsh2	cell line
chr2	91606329	91606329	G	T	ENSMUST00000111338.9	1	ENSMUSG00000040549	missense	Q/H	1591	Ckap5	ENSMUST00000111338.9:c.4773G>T	ENSMUSP00000106970.3:p.Gln1591His	H-2-Kb	9	6	6	IATFMHLRL	IATFMQLRL	NetMHCpan	115.5	368.7	3.192	578	0.151	262.767	458.862	1.746	535.38	267.16	368.7	115.5	460.3731641	298.6138865	457.3513865	258.3747087	M7_p20	0.557142857	1.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.153	578	0	0	NA	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.714907814	sgMsh2	cell line
chr2	91284247	91284247	A	G	ENSMUST00000102594.10	1	ENSMUSG00000040591	missense	F/L	147	1110051M20Rik	ENSMUST00000102594.10:c.439T>C	ENSMUSP00000099654.4:p.Phe147Leu	H-2-Kb	9	3	9	FLFAFQIQL	FLFAFQIQF	NetMHCpan	235.9	1129.7	4.789	203	0.118	317.333	742.822	2.341	735.56	268.86	1129.7	235.9	750.0841699	444.7438999	632.7760017	365.8053055	M7_p20	1.242857143	2.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.128	203	0	0	NA	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.598092812	sgMsh2	cell line
chr2	122123858	122123858	C	T	ENSMUST00000028665.4	1	ENSMUSG00000027233	missense	G/S	411	Patl2	ENSMUST00000028665.4:c.1231G>A	ENSMUSP00000028665.4:p.Gly411Ser	H-2-Kb	9	11	1	SLHMLFKPL	GLHMLFKPL	NetMHCpan	116.1	1434.7	12.357	254	0.157	452.867	1779.655	3.93	3440.74	281.64	1434.7	116.1	2009.601749	709.7575157	1549.708446	624.0939895	M7_p20	0.514285714	0.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.164	254	0	0	NA	2qE5	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	0.766306415	sgMsh2	cell line
chr2	117177703	117177703	A	G	ENSMUST00000028829.12	1	ENSMUSG00000027351	missense	I/M	363	Spred1	ENSMUST00000028829.12:c.1089A>G	ENSMUSP00000028829.6:p.Ile363Met	H-2-Kb	9	10	2	CMYQVSCML	CIYQVSCML	SMM	228.618	511.811	2.239	158	0.228	331.205	563.356	1.701	483.81	295.31	614.9	367.1	511.811453	228.6177783	851.6281337	411.386466	M7_p20	0.971428571	0.971428571	TRUE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.21	158	0	0	NA	2qE5	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	0.981246019	sgMsh2	cell line
chr2	88959354	88959354	C	T	ENSMUST00000215781.1	5	ENSMUSG00000048226	missense	A/V	296	Olfr1212	ENSMUST00000215781.1:c.887C>T	ENSMUSP00000149781.1:p.Ala296Val	H-2-Kb	9	11	1	VIRKMWNRF	AIRKMWNRF	SMM	157.076	466.778	2.972	192	0.151	259.694	769.516	2.963	1005.39	326.08	2454.1	883.5	466.7775928	157.0760603	533.6419961	193.3080768	M7_p20	-1.8	-0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.18	192	0	0	NA	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.841068017	sgMsh2	cell line
chr2	127804943	127804943	A	G	ENSMUST00000028858.7	1	ENSMUSG00000027379	missense	F/L	806	Bub1	ENSMUST00000028858.7:c.2416T>C	ENSMUSP00000028858.7:p.Phe806Leu	H-2-Kb	9	7	5	NSWELYIGM	NSWEFYIGM	NetMHCpan	313.5	33.5	0.107	185	0.2	385.433	70.587	0.183	26.27	375.4	33.5	313.5	107.67379	395.4667729	126.5464598	412.3348098	M7_p20	0.585714286	0.585714286	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.198	185	0	0	NA	2qF1	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	0.925174818	sgMsh2	cell line
chr2	90149482	90149482	A	G	ENSMUST00000215578.1	5	ENSMUSG00000075065	missense	Y/H	175	Olfr1270	ENSMUST00000215578.1:c.523T>C	ENSMUSP00000151124.1:p.Tyr175His	H-2-Kb	9	7	5	VIDHHFCDL	VIDHYFCDL	SMMPMBEC	216.396	172.286	0.796	467	0.152	328.55	236.774	0.721	255.22	384.76	345.2	850.8	218.3282833	272.3391013	172.2860048	216.3963843	M7_p20	-0.614285714	0.585714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.149	467	0	0	NA	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.696217414	sgMsh2	cell line
chr2	90139121	90139121	A	C	ENSMUST00000215153.2	2	ENSMUSG00000075066	missense	V/G	6	Olfr32	ENSMUST00000215153.2:c.17T>G	ENSMUSP00000150246.1:p.Val6Gly	H-2-Kb	9	1	6	MAFVNGTEL	MAFVNVTEL	NetMHCpan	300.4	116.7	0.388	473	0.133	451.798	244.575	0.541	170.65	408.02	116.7	300.4	318.5004131	495.5756965	366.6485738	566.5653364	M7_p20	0.385714286	0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.137	473	0	0	NA	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.640146213	sgMsh2	cell line
chr2	89055070	89055070	A	T	ENSMUST00000215048.1	5	ENSMUSG00000075105	missense	Y/N	119	Olfr1218	ENSMUST00000215048.1:c.355T>A	ENSMUSP00000149171.1:p.Tyr119Asn	H-2-Kb	9	9	3	MANDRYVAI	MAYDRYVAI	SMMPMBEC	298.71	33.439	0.112	393	0.214	406.533	30.259	0.074	27.08	427.49	14.4	608.6	39.27443988	385.5760057	33.43874735	298.7101638	M7_p20	-0.328571429	-0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.213	393	0	0	NA	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	2	0.99526382	sgMsh2	cell line
chr2	88402653	88402653	CT	C	ENSMUST00000213157.1	5	ENSMUSG00000075127	FS	S/X	94	Olfr1179	ENSMUST00000213157.1:c.280del	ENSMUSP00000151174.1:p.Ser94AlafsTer22	H-2-Kb	9	12	0	AWLSFLPCI	NA	SMM	219.842	NA	NA	237	0.173	459.983	NA	NA	NA	571.32	NA	546.5	NA	219.8416627	NA	373.4650797	M7_p20	2.142857143	2.142857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.187	237	0	0	NA	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	2	0.873776217	sgMsh2	cell line
chr2	91167871	91167871	A	C	ENSMUST00000066473.11	5	ENSMUSG00000040687	missense	S/A	635	Madd	ENSMUST00000066473.11:c.1903T>G	ENSMUSP00000069350.5:p.Ser635Ala	H-2-Kb	9	8	4	SSYASLGDF	SSYSSLGDF	NetMHCpan	354.9	367.4	1.035	335	0.119	393.577	331.686	0.843	578.23	780.77	367.4	354.9	247.8049629	409.3643322	295.9715726	377.7896015	M7_p20	0.342857143	0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.124	335	0	0	NA	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.579402411	sgMsh2	cell line
chr2	158768178	158768178	C	T	ENSMUST00000029183.2	1	ENSMUSG00000027654	missense	P/L	22	Fam83d	ENSMUST00000029183.2:c.65C>T	ENSMUSP00000029183.2:p.Pro22Leu	H-2-Db	9	8	4	CGPLNPTEL	CGPPNPTEL	NetMHC	65.56	425.32	6.487	32	0.219	216.905	644.766	2.973	425.32	65.56	306.4	93.7	864.2114181	340.1104688	1154.968129	410.7428385	M7_p20	-0.471428571	-0.214285714	TRUE	FALSE	FALSE	1	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.26	32	0	0	NA	2qH1	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr3	59319877	59319877	CT	C	ENSMUST00000039419.11	5	ENSMUSG00000036334	FS	K/X	2125	Igsf10	ENSMUST00000039419.11:c.6374del	ENSMUSP00000037246.6:p.Lys2125ArgfsTer50	H-2-Db	9	21	0	RSLGNPSQM	NA	SMM	101.069	NA	NA	189	0.265	166.796	NA	NA	NA	272.27	NA	231.6	NA	101.0694727	NA	101.992914	M7_p20	-0.585714286	-0.585714286	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;Vardict	3	0.245	189	0	0	NA	3qD	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr3	45381123	45381123	A	G	ENSMUST00000166126.6	1	ENSMUSG00000049100	missense	N/S	624	Pcdh10	ENSMUST00000166126.6:c.1871A>G	ENSMUSP00000131073.1:p.Asn624Ser	H-2-Db	9	5	7	YSIVRGSEM	YSIVRGNEM	NetMHCpan	330.2	270.2	0.818	30	0.167	467.622	585.178	1.251	571.09	507.07	270.2	330.2	599.2664992	428.173712	775.4789257	599.1975101	M7_p20	0.2	0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.21	30	0	0	NA	3qB	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	0.981246019	sgMsh2	cell line
chr3	27239540	27239540	T	G	ENSMUST00000046515.14	1	ENSMUSG00000027698	missense	L/R	149	Nceh1	ENSMUST00000046515.14:c.446T>G	ENSMUSP00000045864.8:p.Leu149Arg	H-2-Kb	8	5	7	VSIEYRRV	VSIEYRLV	NetMHC	5.85	8.14	1.391	164	0.28	16.448	28.261	1.718	8.14	5.85	19.9	16.5	36.62182643	16.39607892	43.62545806	18.4391119	M7_p20	-0.842857143	-0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.278	164	0	0	NA	3qA3	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr3	49744983	49744983	A	G	ENSMUST00000035931.12	1	ENSMUSG00000037892	missense	V/A	1010	Pcdh18	ENSMUST00000035931.12:c.3029T>C	ENSMUSP00000039245.7:p.Val1010Ala	H-2-Kb	8	8	4	MSSAFQRL	MSSVFQRL	NetMHC	25.6	16.67	0.651	101	0.198	49.318	38.527	0.781	16.67	25.6	30.2	49.8	46.85328006	48.83599043	51.01994663	60.08139392	M7_p20	-0.171428571	-0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.22	101	0	0	NA	3qC	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr3	59217615	59217615	A	G	ENSMUST00000196583.4	5	ENSMUSG00000036353	missense	V/A	213	P2ry12	ENSMUST00000196583.4:c.638T>C	ENSMUSP00000143036.1:p.Val213Ala	H-2-Kb	8	8	4	IVIACYSL	IVIVCYSL	NetMHC	84.61	66.24	0.783	153	0.229	116.467	110.623	0.95	66.24	84.61	99.7	89.8	156.5813381	163.2074578	121.5458122	143.1330745	M7_p20	2.1	2.2	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	153	0	0	NA	3qD	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr3	59319877	59319877	CT	C	ENSMUST00000039419.11	5	ENSMUSG00000036334	FS	K/X	2125	Igsf10	ENSMUST00000039419.11:c.6374del	ENSMUSP00000037246.6:p.Lys2125ArgfsTer50	H-2-Kb	8	45	0	TGSYFMPM	NA	NetMHCpan	71.2	NA	NA	189	0.265	309.636	NA	NA	NA	93.57	NA	71.2	NA	535.475987	NA	525.7024488	M7_p20	0.357142857	0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.245	189	0	0	NA	3qD	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr3	28794409	28794409	G	A	ENSMUST00000060500.8	1	ENSMUSG00000050192	missense	C/Y	139	Eif5a2	ENSMUST00000060500.8:c.416G>A	ENSMUSP00000050289.7:p.Cys139Tyr	H-2-Kb	8	7	5	VSVMYAMS	VSVMCAMS	SMM	72.734	814.217	11.194	345	0.212	100.979	2855.808	28.281	5114.17	120.91	4897.4	389.8	814.2166892	72.73442335	792.027024	81.04757034	M7_p20	0.985714286	1.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.209	345	0	0	NA	3qA3	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	0.976573419	sgMsh2	cell line
chr2	164820502	164820502	C	T	ENSMUST00000052107.4	1	ENSMUSG00000045822	missense	L/F	301	Zswim3	ENSMUST00000052107.4:c.901C>T	ENSMUSP00000050970.3:p.Leu301Phe	H-2-Kb	8	7	5	SARTFLSI	SARTLLSI	NetMHCpan	150.2	2729.6	18.173	158	0.247	269.723	3724.819	13.81	3719.37	185.66	2729.6	150.2	3730.267702	353.7854762	4214.44121	395.1299959	M7_p20	0.985714286	0.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	158	0	0	NA	2qH3	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr3	59217615	59217615	A	G	ENSMUST00000196583.4	5	ENSMUSG00000036353	missense	V/A	213	P2ry12	ENSMUST00000196583.4:c.638T>C	ENSMUSP00000143036.1:p.Val213Ala	H-2-Kb	8	9	3	VIACYSLI	VIVCYSLI	NetMHCpan	203.7	96.5	0.474	153	0.229	265.587	146.812	0.553	73.1	238.26	96.5	203.7	197.1242255	292.9139126	202.1808416	392.4099402	M7_p20	2.142857143	2.142857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	153	0	0	NA	3qD	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr3	59319877	59319877	CT	C	ENSMUST00000039419.11	5	ENSMUSG00000036334	FS	K/X	2125	Igsf10	ENSMUST00000039419.11:c.6374del	ENSMUSP00000037246.6:p.Lys2125ArgfsTer50	H-2-Kb	8	16	0	LSWTVRSL	NA	NetMHCpan	175.3	NA	NA	189	0.265	208.072	NA	NA	NA	288.96	NA	175.3	NA	234.2825811	NA	181.861178	M7_p20	0.042857143	0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.245	189	0	0	NA	3qD	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr2	164025647	164025647	A	G	ENSMUST00000067715.4	1	ENSMUSG00000054582	missense	Y/C	56	Pabpc1l	ENSMUST00000067715.4:c.167A>G	ENSMUSP00000096701.3:p.Tyr56Cys	H-2-Kb	8	5	7	RSLGYACI	RSLGYAYI	SMMPMBEC	239.74	86.445	0.361	87	0.218	315.363	69.973	0.222	31.14	336.46	53.5	359.4	96.54727043	294.2659418	86.44502416	239.7397234	M7_p20	1.442857143	1.442857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.215	87	0	0	NA	2qH3	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr2	146449255	146449255	A	G	ENSMUST00000109986.8	5	ENSMUSG00000037110	missense	F/L	254	Ralgapa2	ENSMUST00000109986.8:c.760T>C	ENSMUSP00000105613.2:p.Phe254Leu	H-2-Kb	8	10	2	LLPSFTKL	LFPSFTKL	NetMHCpan	200.2	284.2	1.42	118	0.288	480.285	228.162	0.475	170.26	450.37	284.2	200.2	227.3735801	667.9439184	228.9496585	510.1994663	M7_p20	0.485714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.278	118	0	0	NA	2qG1	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr3	59319877	59319877	CT	C	ENSMUST00000039419.11	5	ENSMUSG00000036334	FS	K/X	2125	Igsf10	ENSMUST00000039419.11:c.6374del	ENSMUSP00000037246.6:p.Lys2125ArgfsTer50	H-2-Kb	9	44	0	MTGSYFMPM	NA	NetMHC	50.32	NA	NA	189	0.265	82.887	NA	NA	NA	50.32	NA	50.4	NA	115.3745446	NA	141.6609011	M7_p20	0.357142857	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.245	189	0	0	NA	3qD	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr3	59217615	59217615	A	G	ENSMUST00000196583.4	5	ENSMUSG00000036353	missense	V/A	213	P2ry12	ENSMUST00000196583.4:c.638T>C	ENSMUSP00000143036.1:p.Val213Ala	H-2-Kb	9	8	4	IVIACYSLI	IVIVCYSLI	NetMHC	82.85	63.52	0.767	153	0.229	152.628	129.073	0.846	63.52	82.85	149.1	123.6	125.6348137	198.6598028	132.5104107	181.6561058	M7_p20	2.142857143	2.2	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	153	0	0	NA	3qD	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr3	55783246	55783246	G	A	ENSMUST00000075422.5	NA	ENSMUSG00000056947	missense	V/M	85	Mab21l1	ENSMUST00000075422.5:c.253G>A	ENSMUSP00000074878.4:p.Val85Met	H-2-Kb	9	3	9	VLYLNQMGM	VLYLNQMGV	NetMHCpan	134.8	338.8	2.513	144	0.243	231.63	435.522	1.88	202.64	152.01	338.8	134.8	532.243051	311.2504586	661.0738832	400.1750427	M7_p20	-0.157142857	0.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.241	144	0	0	NA	3qC	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr3	59319877	59319877	CT	C	ENSMUST00000039419.11	5	ENSMUSG00000036334	FS	K/X	2125	Igsf10	ENSMUST00000039419.11:c.6374del	ENSMUSP00000037246.6:p.Lys2125ArgfsTer50	H-2-Kb	9	36	0	PTMSFHSPM	NA	SMM	151.743	NA	NA	189	0.265	205.998	NA	NA	NA	181.72	NA	235.2	NA	151.7434661	NA	230.2767015	M7_p20	0.028571429	0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.245	189	0	0	NA	3qD	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr2	158120220	158120220	T	C	ENSMUST00000103122.9	1	ENSMUSG00000037820	missense	I/V	560	Tgm2	ENSMUST00000103122.9:c.1678A>G	ENSMUSP00000099411.3:p.Ile560Val	H-2-Kb	9	8	4	SNLVKVRGL	SNLIKVRGL	NetMHC	221.73	256.46	1.157	64	0.281	313.145	361.082	1.153	256.46	221.73	250.6	241.6	465.7040341	384.6892055	496.8782653	504.9518876	M7_p20	1.028571429	1.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.268	64	0	0	NA	2qH1	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr3	18103736	18103736	C	A	ENSMUST00000035625.6	1	ENSMUSG00000039519	missense	R/M	73	Cyp7b1	ENSMUST00000035625.6:c.218G>T	ENSMUSP00000037487.6:p.Arg73Met	H-2-Kb	9	3	9	LTFLKTLQM	LTFLKTLQR	SMMPMBEC	202.418	2730.549	13.49	113	0.186	248.191	4964.832	20.004	6991.27	265.57	14313.8	235.1	2938.393807	261.2823058	2730.549161	202.4184057	M7_p20	0.6	1.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	113	0	0	NA	3qA1	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	0.934520019	sgMsh2	cell line
chr2	146460717	146460717	T	C	ENSMUST00000109986.8	5	ENSMUSG00000037110	missense	I/V	109	Ralgapa2	ENSMUST00000109986.8:c.325A>G	ENSMUSP00000105613.2:p.Ile109Val	H-2-Kb	9	3	9	FFRWHYQSV	FFRWHYQSI	SMM	325.17	359.013	1.104	220	0.223	353.047	397.168	1.125	411.29	335.2	1082	1393.4	359.0128555	325.1696473	383.0451784	370.8941642	M7_p20	-1.428571429	-1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.221	220	0	0	NA	2qG1	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr3	49744983	49744983	A	G	ENSMUST00000035931.12	1	ENSMUSG00000037892	missense	V/A	1010	Pcdh18	ENSMUST00000035931.12:c.3029T>C	ENSMUSP00000039245.7:p.Val1010Ala	H-2-Kb	9	10	2	SAFQRLLPA	SVFQRLLPA	NetMHCpan	169.1	221.8	1.312	101	0.198	325.995	371.397	1.139	424.18	359.31	221.8	169.1	391.8411118	348.4255546	350.9538411	303.5638135	M7_p20	0.371428571	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.22	101	0	0	NA	3qC	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr2	157169951	157169951	T	A	ENSMUST00000029170.7	1	ENSMUSG00000027641	missense	I/F	695	Rbl1	ENSMUST00000029170.7:c.2083A>T	ENSMUSP00000029170.7:p.Ile695Phe	H-2-Kb	9	9	3	LSFSPGQAL	LSISPGQAL	NetMHC	401.58	1818.42	4.528	201	0.274	492.319	1877.978	3.815	1818.42	401.58	2647.2	466.9	1445.805924	517.7379503	1937.536979	721.5227015	M7_p20	0.3	0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.266	201	0	0	NA	2qH1	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr2	164215417	164215417	T	C	ENSMUST00000109376.8	1	ENSMUSG00000018211	missense	N/S	18	Wfdc15b	ENSMUST00000109376.8:c.53A>G	ENSMUSP00000105001.2:p.Asn18Ser	H-2-Kb	9	4	8	VTILLCCSM	VTILLCCNM	NetMHC	424.54	183.95	0.433	208	0.298	454.203	325.663	0.717	183.95	424.54	252.2	450	399.1259819	464.6329446	407.6148523	458.4056903	M7_p20	2.6	2.942857143	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.276	208	0	0	NA	2qH3	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr3	59319877	59319877	CT	C	ENSMUST00000039419.11	5	ENSMUSG00000036334	FS	K/X	2125	Igsf10	ENSMUST00000039419.11:c.6374del	ENSMUSP00000037246.6:p.Lys2125ArgfsTer50	H-2-Kb	9	46	0	GSYFMPMEL	NA	NetMHCpan	233.3	NA	NA	189	0.265	268.388	NA	NA	NA	477.81	NA	233.3	NA	242.1642333	NA	294.6117067	M7_p20	0.571428571	0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.245	189	0	0	NA	3qD	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr2	160753658	160753658	T	C	ENSMUST00000103115.7	1	ENSMUSG00000016933	missense	Y/H	509	Plcg1	ENSMUST00000103115.7:c.1525T>C	ENSMUSP00000099404.1:p.Tyr509His	H-2-Kb	9	6	6	EWYPHHFVL	EWYPHYFVL	SMM	204.696	58.494	0.286	92	0.163	326.923	129.606	0.396	278.91	720.61	181.9	407.1	58.49382211	204.6963035	77.31255038	246.7459312	M7_p20	0.214285714	0.214285714	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.194	92	0	0	NA	2qH2	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	0.906484418	sgMsh2	cell line
chr3	134829585	134829585	A	G	ENSMUST00000029822.5	1	ENSMUSG00000028172	missense	T/A	105	Tacr3	ENSMUST00000029822.5:c.313A>G	ENSMUSP00000029822.4:p.Thr105Ala	H-2-Db	9	10	2	RAVTNYFLV	RTVTNYFLV	NetMHC	9.05	101.4	11.204	209	0.057	34.59	225.444	6.518	101.4	9.05	146.4	15.9	408.9027205	62.8955617	304.4878727	53.28070958	M7_p20	1.357142857	1.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.065	209	0	0	NA	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	0.303719006	sgMsh2	cell line
chr3	92031460	92031460	C	T	ENSMUST00000047660.4	1	ENSMUSG00000042244	missense	T/I	314	Pglyrp3	ENSMUST00000047660.4:c.941C>T	ENSMUSP00000035737.4:p.Thr314Ile	H-2-Db	9	9	3	YLISNYLLM	YLTSNYLLM	NetMHC	23.32	358.54	15.375	117	0.248	74.757	395.072	5.285	358.54	23.32	577.8	76.8	374.645051	72.71432886	415.4990164	79.90427218	M7_p20	1.2	1.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.225	117	0	0	NA	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr3	117686686	117686686	T	C	ENSMUST00000238937.1	NA	ENSMUSG00000033342	missense	S/P	373	Plppr5	ENSMUST00000238937.1:c.1117T>C	ENSMUSP00000159092.1:p.Ser373Pro	H-2-Db	9	8	8	FSLHWTSPL	FSLHWTSSL	NetMHC	330.52	2263.68	6.849	233	0.275	339	1754.915	5.177	2263.68	330.52	3034.5	504.4	1232.02636	346.4335945	1246.149077	331.5660076	M7_p20	0.057142857	0.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.275	233	0	0	NA	3qG1	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr3	105005546	105005546	C	A	ENSMUST00000077548.11	1	ENSMUSG00000062127	missense	A/S	341	Cttnbp2nl	ENSMUST00000077548.11:c.1021G>T	ENSMUSP00000076751.5:p.Ala341Ser	H-2-Kb	8	11	1	SAYSYAKA	AAYSYAKA	NetMHC	11.09	24.13	2.176	123	0.236	44.921	75.024	1.67	24.13	11.09	53.5	32.2	129.0446488	68.82401428	96.54727043	57.64212727	M7_p20	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.256	123	0	0	NA	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr3	88245865	88245865	T	G	ENSMUST00000171887.3	1	ENSMUSG00000104445	missense	S/R	261	Rhbg	ENSMUST00000171887.3:c.781A>C	ENSMUSP00000130767.1:p.Ser261Arg	H-2-Kb	8	8	4	STLRTFAL	STLSTFAL	NetMHC	23.82	41.85	1.757	195	0.21	131.83	198.362	1.505	41.85	23.82	149.7	97.8	247.0244836	165.8593656	264.691503	174.8799418	M7_p20	0.9	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.203	195	0	0	NA	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	0.948537819	sgMsh2	cell line
chr3	126981840	126981840	T	G	ENSMUST00000182078.8	5	ENSMUSG00000032826	missense	N/H	831	Ank2	ENSMUST00000182078.8:c.2491A>C	ENSMUSP00000138753.3:p.Asn831His	H-2-Kb	8	10	2	MHYLRYSL	MNYLRYSL	NetMHC	24.95	7.35	0.295	188	0.261	127.674	38.762	0.304	7.35	24.95	8.7	56.4	68.82401428	198.9481935	81.60936526	225.2890066	M7_p20	-0.5	-0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.259	188	0	0	NA	3qG2	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr3	88245865	88245865	T	G	ENSMUST00000171887.3	1	ENSMUSG00000104445	missense	S/R	261	Rhbg	ENSMUST00000171887.3:c.781A>C	ENSMUSP00000130767.1:p.Ser261Arg	H-2-Kb	8	11	1	RTFALSAL	STFALSAL	NetMHC	38.74	14.57	0.376	195	0.21	51.2	21.65	0.423	14.57	38.74	20.3	53.9	23.00064421	48.49980584	29.22402293	57.90819124	M7_p20	1.785714286	1.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.203	195	0	0	NA	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	0.948537819	sgMsh2	cell line
chr3	95324761	95324761	T	C	ENSMUST00000015841.11	1	ENSMUSG00000015697	missense	T/A	1197	Setdb1	ENSMUST00000015841.11:c.3589A>G	ENSMUSP00000015841.5:p.Thr1197Ala	H-2-Kb	8	6	6	IAIKSANM	IAIKSTNM	NetMHC	52.92	235.57	4.451	150	0.28	168.576	468.607	2.78	235.57	52.92	336.4	126.9	600.8139392	210.2519343	666.4076901	228.4230889	M7_p20	0.257142857	0.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.279	150	0	0	NA	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr3	146240695	146240695	T	C	ENSMUST00000039164.3	1	ENSMUSG00000036832	missense	F/L	43	Lpar3	ENSMUST00000039164.3:c.127T>C	ENSMUSP00000037712.2:p.Phe43Leu	H-2-Kb	8	4	8	VGTFFCLL	VGTFFCLF	NetMHCpan	24.3	256.6	10.56	150	0.06	61.233	1017.395	16.615	956.49	54.43	256.6	24.3	1105.961477	68.0361923	1078.30098	85.8499408	M7_p20	2.085714286	2.142857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.071	150	0	0	NA	3qH2	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	0.331754607	sgMsh2	cell line
chr3	127032016	127032016	T	C	ENSMUST00000182994.7	1	ENSMUSG00000032826	missense	T/A	445	Ank2	ENSMUST00000182994.7:c.1333A>G	ENSMUSP00000138089.1:p.Thr445Ala	H-2-Kb	8	12	1	AAKLFPPL	TAKLFPPL	NetMHCpan	52.4	50	0.954	192	0.214	91.882	75.718	0.824	63.18	71.37	50	52.4	97.89037676	123.5207728	88.25513833	112.3931906	M7_p20	0.728571429	0.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.22	192	0	0	NA	3qG2	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr3	116895535	116895535	T	C	ENSMUST00000195905.4	5	ENSMUSG00000033386	missense	Y/H	352	Frrs1	ENSMUST00000195905.4:c.1054T>C	ENSMUSP00000143255.1:p.Tyr352His	H-2-Kb	8	6	6	ITYEKHNV	ITYEKYNV	NetMHCpan	72.9	26.7	0.366	201	0.249	114.948	62.295	0.542	19.92	95.08	26.7	72.9	97.89037676	134.8155538	117.9614222	155.8619122	M7_p20	-1.7	-1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.259	201	0	0	NA	3qG1	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr3	148837574	148837574	C	A	ENSMUST00000197567.4	2	ENSMUSG00000028184	missense	R/M	838	Adgrl2	ENSMUST00000197567.4:c.2513G>T	ENSMUSP00000143626.1:p.Arg838Met	H-2-Kb	8	4	8	FAILMAHM	FAILMAHR	NetMHC	134.67	11710.49	86.957	116	0.233	323.503	7529.07	23.274	11710.49	134.67	13904.9	232.3	2628.693795	471.7805149	3347.649647	414.7056956	M7_p20	1.785714286	1.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.243	116	0	0	NA	3qH3	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr3	146240695	146240695	T	C	ENSMUST00000039164.3	1	ENSMUSG00000036832	missense	F/L	43	Lpar3	ENSMUST00000039164.3:c.127T>C	ENSMUSP00000037712.2:p.Phe43Leu	H-2-Kb	8	11	1	LIFFSNSL	FIFFSNSL	NetMHCpan	73.4	121.4	1.654	150	0.06	237.305	192.725	0.812	276.63	249.84	121.4	73.4	161.7111628	224.7708563	223.738128	262.8693795	M7_p20	1.257142857	1.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.071	150	0	0	NA	3qH2	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	0.331754607	sgMsh2	cell line
chr3	108883558	108883558	T	C	ENSMUST00000102620.9	1	ENSMUSG00000045326	missense	T/A	51	Fndc7	ENSMUST00000102620.9:c.151A>G	ENSMUSP00000099680.3:p.Thr51Ala	H-2-Kb	8	5	7	ITVEWTAV	ITVEWTTV	SMMPMBEC	324.146	510.199	1.574	313	0.217	373.787	554.126	1.482	686.4	388.04	465.6	437.7	598.0534499	359.5340277	510.1994663	324.1455024	M7_p20	0.628571429	0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.217	313	0	0	NA	3qF3	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr3	108464426	108464426	AT	A	ENSMUST00000106625.9	5	ENSMUSG00000040412	FS	M/X	711	5330417C22Rik	ENSMUST00000106625.9:c.2131del	ENSMUSP00000102236.3:p.Met711TrpfsTer38	H-2-Kb	8	34	0	SQPMSARL	NA	NetMHC	403.32	NA	NA	50	0.28	468.776	NA	NA	NA	403.32	NA	1378.8	NA	453.6699358	NA	483.8825938	M7_p20	-0.414285714	-0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.284	50	0	0	NA	3qF3	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr3	108464426	108464426	AT	A	ENSMUST00000106625.9	5	ENSMUSG00000040412	FS	M/X	711	5330417C22Rik	ENSMUST00000106625.9:c.2131del	ENSMUSP00000102236.3:p.Met711TrpfsTer38	H-2-Kb	8	17	0	MSLTSGSL	NA	SMM	194.42	NA	NA	50	0.28	316.602	NA	NA	NA	408.95	NA	475.7	NA	194.4195797	NA	224.2538976	M7_p20	0.585714286	0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.284	50	0	0	NA	3qF3	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr3	146650711	146650711	TG	T	ENSMUST00000049703.5	1	ENSMUSG00000090202	FS	P/X	147	4930503B20Rik	ENSMUST00000049703.5:c.441del	ENSMUSP00000051453.5:p.Ile148SerfsTer28	H-2-Kb	8	13	0	WTQDFLRL	NA	SMM	151.614	NA	NA	113	0.363	313.889	NA	NA	NA	463.44	NA	520.5	NA	151.6142424	NA	164.3387578	M7_p20	-0.257142857	-0.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.342	113	0	0	NA	3qH2	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr3	106164811	106164811	A	G	ENSMUST00000063062.8	1	ENSMUSG00000040809	missense	V/A	16	Chil3	ENSMUST00000063062.8:c.47T>C	ENSMUSP00000053923.8:p.Val16Ala	H-2-Kb	8	6	6	AILLNAQL	AILLNVQL	SMMPMBEC	190.432	549.212	2.884	527	0.108	366.043	1259.005	3.439	1937.13	491.24	1821.8	847.9	696.209588	240.8463117	549.2119775	190.4320313	M7_p20	1.528571429	1.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.106	527	0	0	NA	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	0.49529561	sgMsh2	cell line
chr3	69575824	69575824	A	G	ENSMUST00000061826.2	1	ENSMUSG00000043300	missense	Y/H	35	B3galnt1	ENSMUST00000061826.2:c.103T>C	ENSMUSP00000058363.1:p.Tyr35His	H-2-Kb	8	7	5	LVIWHLSL	LVIWYLSL	NetMHCpan	130.4	33.6	0.258	121	0.182	429.29	80.664	0.188	62.76	492.62	33.6	130.4	111.6194813	432.2549746	98.56892043	426.324214	M7_p20	1.628571429	1.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.195	121	0	0	NA	3qE1	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	0.911157018	sgMsh2	cell line
chr3	102758173	102758173	T	C	ENSMUST00000029451.11	1	ENSMUSG00000027858	missense	L/S	96	Tspan2	ENSMUST00000029451.11:c.287T>C	ENSMUSP00000029451.5:p.Leu96Ser	H-2-Kb	8	5	7	SFFTCLSV	SFFTCLLV	SMM	328.655	421.444	1.282	380	0.266	440.138	525.068	1.193	573.99	518.25	1185.7	674	421.444121	328.6548155	476.1458462	362.0261985	M7_p20	2.085714286	2.085714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.264	380	0	0	NA	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr3	68927791	68927791	A	G	ENSMUST00000107812.7	5	ENSMUSG00000027778	missense	I/T	439	Ift80	ENSMUST00000107812.7:c.1316T>C	ENSMUSP00000103442.1:p.Ile439Thr	H-2-Kb	8	11	1	TIFLFEAS	IIFLFEAS	SMM	114.483	40.902	0.357	132	0.311	496.639	214.122	0.431	378.83	1363.31	368.3	827.8	40.90157201	114.482736	59.94321055	165.4778997	M7_p20	1.628571429	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.316	132	0	0	NA	3qE1	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr3	127032016	127032016	T	C	ENSMUST00000182994.7	1	ENSMUSG00000032826	missense	T/A	445	Ank2	ENSMUST00000182994.7:c.1333A>G	ENSMUSP00000138089.1:p.Thr445Ala	H-2-Kb	9	11	2	IAAKLFPPL	ITAKLFPPL	NetMHCpan	24.7	26.4	1.069	192	0.214	78.474	101.297	1.291	52.54	47.02	26.4	24.7	151.3944658	109.9284236	150.0548372	116.211739	M7_p20	0.728571429	1.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.22	192	0	0	NA	3qG2	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr3	117686686	117686686	T	C	ENSMUST00000238937.1	NA	ENSMUSG00000033342	missense	S/P	373	Plppr5	ENSMUST00000238937.1:c.1117T>C	ENSMUSP00000159092.1:p.Ser373Pro	H-2-Kb	9	8	8	FSLHWTSPL	FSLHWTSSL	NetMHC	62.53	137.09	2.192	233	0.275	116.026	214.118	1.845	137.09	62.53	128.7	64.9	291.1454451	167.1513929	302.8656361	177.1128208	M7_p20	0.057142857	0.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.275	233	0	0	NA	3qG1	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr3	102758173	102758173	T	C	ENSMUST00000029451.11	1	ENSMUSG00000027858	missense	L/S	96	Tspan2	ENSMUST00000029451.11:c.287T>C	ENSMUSP00000029451.5:p.Leu96Ser	H-2-Kb	9	10	2	LSVIFAAEV	LLVIFAAEV	NetMHC	100.12	2383.66	23.808	380	0.266	382.003	2468.916	6.463	2383.66	100.12	2025.6	168	2884.762076	599.9430132	2554.171179	596.0051329	M7_p20	2.257142857	2.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.264	380	0	0	NA	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr3	138480720	138480720	A	G	ENSMUST00000029804.12	1	ENSMUSG00000005813	missense	Y/H	83	Metap1	ENSMUST00000029804.12:c.247T>C	ENSMUSP00000029804.8:p.Tyr83His	H-2-Kb	9	7	5	AGYRHTGKL	AGYRYTGKL	NetMHCpan	63.1	17.5	0.277	461	0.206	163.612	99.448	0.608	18.49	100.63	17.5	63.1	271.7127388	338.9299909	180.405594	226.5948317	M7_p20	-1.457142857	-1.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.222	461	0	0	NA	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr3	116605233	116605233	GT	G	ENSMUST00000198311.4	1	ENSMUSG00000027959	FS	F/X	55	Sass6	ENSMUST00000198311.4:c.168del	ENSMUSP00000143233.1:p.Leu57CysfsTer14	H-2-Kb	9	14	0	ITLLYLRKI	NA	NetMHCpan	81.7	NA	NA	69	0.246	238.592	NA	NA	NA	113.06	NA	81.7	NA	466.7775928	NA	364.1245828	M7_p20	0.885714286	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.26	69	0	0	NA	3qG1	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr3	129331941	129331941	T	C	ENSMUST00000029658.13	1	ENSMUSG00000028024	missense	T/A	181	Enpep	ENSMUST00000029658.13:c.541A>G	ENSMUSP00000029658.7:p.Thr181Ala	H-2-Kb	9	6	6	SVYRLAMEF	SVYRLTMEF	NetMHCpan	116.3	119.4	1.027	58	0.328	275.807	228.177	0.827	172.49	180.84	119.4	116.3	283.863792	370.7746213	398.3364054	554.9450731	M7_p20	0.142857143	0.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.3	58	0	0	NA	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr3	68927791	68927791	A	G	ENSMUST00000107812.7	5	ENSMUSG00000027778	missense	I/T	439	Ift80	ENSMUST00000107812.7:c.1316T>C	ENSMUSP00000103442.1:p.Ile439Thr	H-2-Kb	9	11	1	TIFLFEAST	IIFLFEAST	NetMHC	181.4	78.59	0.433	132	0.311	236.705	140.504	0.594	78.59	181.4	219.4	418.7	139.6722084	239.3922023	141.3350901	234.0183969	M7_p20	0.885714286	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.316	132	0	0	NA	3qE1	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr3	92031460	92031460	C	T	ENSMUST00000047660.4	1	ENSMUSG00000042244	missense	T/I	314	Pglyrp3	ENSMUST00000047660.4:c.941C>T	ENSMUSP00000035737.4:p.Thr314Ile	H-2-Kb	9	7	5	KGYLISNYL	KGYLTSNYL	NetMHCpan	161.4	239	1.481	117	0.248	329.632	285.872	0.867	142.55	202.06	239	161.4	332.7438214	457.2039776	662.5978159	692.2293355	M7_p20	0.742857143	0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.225	117	0	0	NA	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr3	146240695	146240695	T	C	ENSMUST00000039164.3	1	ENSMUSG00000036832	missense	F/L	43	Lpar3	ENSMUST00000039164.3:c.127T>C	ENSMUSP00000037712.2:p.Phe43Leu	H-2-Kb	9	3	9	CVGTFFCLL	CVGTFFCLF	SMM	155.278	261.885	1.687	150	0.06	227.835	482.975	2.12	549.8	223.47	1597.7	232.2	261.8846237	155.2780255	416.1500968	240.5747261	M7_p20	2.085714286	2.142857143	TRUE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;Vardict	3	0.071	150	0	0	NA	3qH2	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	0.331754607	sgMsh2	cell line
chr3	146597208	146597208	GC	G	ENSMUST00000029837.13	1	ENSMUSG00000028186	FS	A/X	2	Uox	ENSMUST00000029837.13:c.7del	ENSMUSP00000029837.7:p.His3IlefsTer47	H-2-Kb	9	23	0	KTWSKFSIF	NA	NetMHCpan	182.6	NA	NA	328	0.229	234.934	NA	NA	NA	228.26	NA	182.6	NA	241.607271	NA	312.7879401	M7_p20	0.528571429	0.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.217	328	0	0	NA	3qH2	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr3	129331941	129331941	T	C	ENSMUST00000029658.13	1	ENSMUSG00000028024	missense	T/A	181	Enpep	ENSMUST00000029658.13:c.541A>G	ENSMUSP00000029658.7:p.Thr181Ala	H-2-Kb	9	10	2	LAMEFKGWL	LTMEFKGWL	NetMHCpan	278.5	245.2	0.88	58	0.328	349.325	476.163	1.363	470.1	347.81	245.2	278.5	483.1811688	350.8407252	482.2253089	373.4650797	M7_p20	-0.028571429	0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.3	58	0	0	NA	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr3	108464426	108464426	AT	A	ENSMUST00000106625.9	5	ENSMUSG00000040412	FS	M/X	711	5330417C22Rik	ENSMUST00000106625.9:c.2131del	ENSMUSP00000102236.3:p.Met711TrpfsTer38	H-2-Kb	9	38	0	SARLSSSPL	NA	SMM	306.274	NA	NA	50	0.28	447.926	NA	NA	NA	360.98	NA	1051.3	NA	306.2739079	NA	534.872168	M7_p20	-0.128571429	-0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.284	50	0	0	NA	3qF3	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr3	125438107	125438107	G	T	ENSMUST00000173932.7	5	ENSMUSG00000027971	missense	M/I	108	Ndst4	ENSMUST00000173932.7:c.324G>T	ENSMUSP00000133341.2:p.Met108Ile	H-2-Kb	9	4	8	SSRFQYQIV	SSRFQYQMV	SMM	368.222	285.831	0.776	203	0.227	434.275	314.794	0.725	116	378.49	471.8	848.3	285.8314418	368.2222268	343.7557727	490.0608399	M7_p20	-0.185714286	-0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.214	203	0	0	NA	3qG1	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	0.99993642	sgMsh2	cell line
chr3	146650711	146650711	TG	T	ENSMUST00000049703.5	1	ENSMUSG00000090202	FS	P/X	147	4930503B20Rik	ENSMUST00000049703.5:c.441del	ENSMUSP00000051453.5:p.Ile148SerfsTer28	H-2-Kb	9	30	0	MTLKHLYHI	NA	NetMHCpan	217.1	NA	NA	113	0.363	488.474	NA	NA	NA	389.31	NA	217.1	NA	587.6381732	NA	626.9746764	M7_p20	0.071428571	0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.342	113	0	0	NA	3qH2	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr3	126981840	126981840	T	G	ENSMUST00000182078.8	5	ENSMUSG00000032826	missense	N/H	831	Ank2	ENSMUST00000182078.8:c.2491A>C	ENSMUSP00000138753.3:p.Asn831His	H-2-Kb	9	10	2	MHYLRYSLE	MNYLRYSLE	SMM	59.856	24.553	0.41	188	0.261	255.108	63.301	0.248	97.41	442.88	277.7	550	24.55330734	59.85631826	29.19106903	67.33641643	M7_p20	-0.542857143	-0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.259	188	0	0	NA	3qG2	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr3	93443526	93443526	A	G	ENSMUST00000064257.5	5	ENSMUSG00000052415	missense	Q/R	91	Tchh	ENSMUST00000064257.5:c.272A>G	ENSMUSP00000069525.5:p.Gln91Arg	H-2-Kb	9	7	5	YALDRAAEL	YALDQAAEL	SMM	453.012	1368.075	3.02	137	0.263	474.117	1769.9	3.733	2087.83	556.82	1828.8	475.9	1368.075294	453.0123063	1710.999962	472.3348608	M7_p20	-0.042857143	-0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.29	137	0	0	NA	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr3	138282520	138282520	G	A	ENSMUST00000004232.9	1	ENSMUSG00000074207	missense	S/N	115	Adh1	ENSMUST00000004232.9:c.344G>A	ENSMUSP00000004232.9:p.Ser115Asn	H-2-Kb	9	5	7	SNFCSRNDL	SNFCSRSDL	NetMHCpan	447.4	283	0.633	293	0.273	453.632	386.125	0.851	602.55	1034.69	283	447.4	391.8411118	448.8590645	380.4083139	458.4056903	M7_p20	-0.457142857	-0.457142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.27	293	0	0	NA	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr4	35709180	35709180	G	A	ENSMUST00000164772.7	1	ENSMUSG00000045083	missense	L/F	267	Lingo2	ENSMUST00000164772.7:c.799C>T	ENSMUSP00000130423.1:p.Leu267Phe	H-2-Db	9	11	1	FAFKHLVYL	LAFKHLVYL	NetMHCpan	46.3	222.5	4.806	150	0.32	183.812	686.922	3.737	631.56	111.43	222.5	46.3	1108.204731	375.508697	742.2838301	256.1946168	M7_p20	0.885714286	1.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.337	150	0	0	NA	4qA5	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr4	70433397	70433397	A	G	ENSMUST00000107359.8	1	ENSMUSG00000039270	missense	S/P	496	Megf9	ENSMUST00000107359.8:c.1486T>C	ENSMUSP00000102982.2:p.Ser496Pro	H-2-Db	9	9	3	SSPENSTSA	SSSENSTSA	NetMHC	122.38	4730.47	38.654	91	0.385	327.502	1353.736	4.134	4730.47	122.38	1651.7	300.5	723.8023686	354.5030696	1055.77166	543.9638013	M7_p20	-1.3	-1.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.38	91	0	0	NA	4qC2	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr3	159515518	159515518	A	T	ENSMUST00000120272.7	1	ENSMUSG00000028175	missense	K/M	162	Depdc1a	ENSMUST00000120272.7:c.485A>T	ENSMUSP00000113216.1:p.Lys162Met	H-2-Db	9	4	8	FSQENTEMI	FSQENTEKI	NetMHCpan	102.5	156.8	1.53	181	0.282	139.828	186.102	1.331	162.01	143.12	156.8	102.5	210.1938476	139.8363244	224.6828893	139.8202261	M7_p20	-1.185714286	-1.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.29	181	0	0	NA	3qH4	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr4	101137712	101137712	T	C	ENSMUST00000038463.14	1	ENSMUSG00000035275	missense	V/A	544	Raver2	ENSMUST00000038463.14:c.1631T>C	ENSMUSP00000043142.8:p.Val544Ala	H-2-Db	9	11	1	AASKNQTSL	VASKNQTSL	SMM	116.043	148.806	1.282	94	0.34	127.192	176.848	1.39	287.14	241.2	174.4	116.8	148.8058483	116.0432811	179.295752	137.5846553	M7_p20	-1.342857143	-1.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.328	94	0	0	NA	4qC6	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr4	98973478	98973478	A	G	ENSMUST00000030286.13	5	ENSMUSG00000028556	missense	V/A	1334	Dock7	ENSMUST00000030286.13:c.4001T>C	ENSMUSP00000030286.7:p.Val1334Ala	H-2-Db	9	10	2	WALKNADET	WVLKNADET	SMMPMBEC	178.061	1136.501	6.383	43	0.372	273.241	2878.792	10.536	7340.81	297.24	4163.1	531.5	1594.483392	249.2412955	1136.501465	178.0614887	M7_p20	-1.357142857	-0.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.356	43	0	0	NA	4qC6	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr4	35709180	35709180	G	A	ENSMUST00000164772.7	1	ENSMUSG00000045083	missense	L/F	267	Lingo2	ENSMUST00000164772.7:c.799C>T	ENSMUSP00000130423.1:p.Leu267Phe	H-2-Kb	8	6	6	STVPFFAF	STVPFLAF	NetMHCpan	105.2	262.4	2.494	150	0.32	341.149	733.128	2.149	589.78	143.11	262.4	105.2	876.4759423	539.1877292	913.5661511	541.6765067	M7_p20	1.728571429	1.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.337	150	0	0	NA	4qA5	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr4	118709712	118709712	T	C	ENSMUST00000215117.2	5	ENSMUSG00000046790	missense	Y/H	102	Olfr1341	ENSMUST00000215117.2:c.304T>C	ENSMUSP00000149466.1:p.Tyr102His	H-2-Kb	8	7	5	VAQMHIFL	VAQMYIFL	SMM	148.163	38.26	0.258	183	0.366	165.39	32.63	0.197	19.66	154.18	27	176.6	38.25956254	148.1630809	44.02911945	190.4320313	M7_p20	1.157142857	1.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.351	183	0	0	NA	4qD2.1	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr4	125694046	125694046	A	G	ENSMUST00000030676.7	1	ENSMUSG00000001985	missense	Y/C	653	Grik3	ENSMUST00000030676.7:c.1958A>G	ENSMUSP00000030676.7:p.Tyr653Cys	H-2-Kb	8	8	4	ISSCTANL	ISSYTANL	SMMPMBEC	159.86	137.322	0.859	117	0.214	169.524	84.061	0.496	20.23	175.84	30.8	372.2	155.5034397	163.2074578	137.3219621	159.8600704	M7_p20	0.328571429	0.428571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	117	0	0	NA	4qD2.2	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr4	41023681	41023681	A	C	ENSMUST00000098143.10	1	ENSMUSG00000028423	missense	D/A	1030	Nfx1	ENSMUST00000098143.10:c.3089A>C	ENSMUSP00000095747.4:p.Asp1030Ala	H-2-Kb	8	8	4	IIHALAQV	IIHDLAQV	NetMHC	185.61	552.39	2.976	78	0.256	215.133	495.329	2.302	552.39	185.61	1150.3	532.2	438.2682402	229.4774419	388.8123042	200.7890385	M7_p20	1.342857143	1.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.274	78	0	0	NA	4qA5	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr4	52995837	52995837	C	T	ENSMUST00000188045.6	1	ENSMUSG00000015242	missense	A/V	95	Nipsnap3a	ENSMUST00000188045.6:c.284C>T	ENSMUSP00000140727.1:p.Ala95Val	H-2-Kb	8	10	2	RVAVYKAL	RAAVYKAL	SMM	294.266	289.561	0.984	85	0.318	307.769	334.747	1.088	327.72	438.89	367.5	299.5	289.5609548	294.2659418	341.7747702	316.0385059	M7_p20	1.514285714	1.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.327	85	0	0	NA	4qB2	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr4	41121239	41121239	A	G	ENSMUST00000030138.8	1	ENSMUSG00000028430	missense	V/A	339	Nol6	ENSMUST00000030138.8:c.1016T>C	ENSMUSP00000030138.8:p.Val339Ala	H-2-Kb	8	6	6	VALLKAWL	VALLKVWL	SMM	374.749	1083.278	2.891	67	0.239	406.808	1087.033	2.672	1746.99	486.53	971.2	435.4	1083.278191	374.7485835	1090.787117	378.2160895	M7_p20	1.457142857	1.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.288	67	0	0	NA	4qA5	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr4	35709180	35709180	G	A	ENSMUST00000164772.7	1	ENSMUSG00000045083	missense	L/F	267	Lingo2	ENSMUST00000164772.7:c.799C>T	ENSMUSP00000130423.1:p.Leu267Phe	H-2-Kb	8	9	3	PFFAFKHL	PFLAFKHL	SMM	137.639	575.096	4.178	150	0.32	376.724	1947.175	5.169	3241.61	602.53	3839.3	939.6	575.0955406	137.6385219	652.7396586	150.9176382	M7_p20	0.985714286	0.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.337	150	0	0	NA	4qA5	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr4	35709180	35709180	G	A	ENSMUST00000164772.7	1	ENSMUSG00000045083	missense	L/F	267	Lingo2	ENSMUST00000164772.7:c.799C>T	ENSMUSP00000130423.1:p.Leu267Phe	H-2-Kb	9	11	1	FAFKHLVYL	LAFKHLVYL	NetMHCpan	33	23.5	0.712	150	0.32	70.763	61.326	0.867	57	66.69	23.5	33	72.79641631	74.83590241	65.65230826	75.37893549	M7_p20	0.885714286	1.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.337	150	0	0	NA	4qA5	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr4	35709180	35709180	G	A	ENSMUST00000164772.7	1	ENSMUSG00000045083	missense	L/F	267	Lingo2	ENSMUST00000164772.7:c.799C>T	ENSMUSP00000130423.1:p.Leu267Phe	H-2-Kb	9	8	4	VPFFAFKHL	VPFLAFKHL	NetMHC	151.29	104.06	0.688	150	0.32	273.695	272.994	0.997	104.06	151.29	187.8	162.7	358.1871488	384.6892055	496.8782653	472.3348608	M7_p20	0.985714286	1.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.337	150	0	0	NA	4qA5	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr4	121082857	121082857	TA	T	ENSMUST00000058754.8	1	ENSMUSG00000043207	FS	F/X	197	Zmpste24	ENSMUST00000058754.8:c.591del	ENSMUSP00000053900.2:p.Phe197LeufsTer9	H-2-Kb	9	5	7	IGGDYFLYM	IGGDYFFIY	NetMHCpan	84.1	5310.6	63.146	50	0.34	202.807	3020.239	14.892	6860.81	204.59	5310.6	84.1	716.3248211	250.6744092	729.8775406	201.0249672	M7_p20	0.285714286	0.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.331	50	0	0	NA	4qD2.2	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr4	120162006	120162006	T	G	ENSMUST00000030384.4	1	ENSMUSG00000028635	missense	I/S	64	Edn2	ENSMUST00000030384.4:c.191T>G	ENSMUSP00000030384.4:p.Ile64Ser	H-2-Kb	9	4	8	VYFCHLDSI	VYFCHLDII	SMMPMBEC	195.997	246.178	1.256	61	0.328	229.431	322.023	1.404	397.38	243.53	800.5	302.1	246.6664026	215.332707	246.1784313	195.99726	M7_p20	0.871428571	0.871428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.324	61	0	0	NA	4qD2.1	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr4	118709712	118709712	T	C	ENSMUST00000215117.2	5	ENSMUSG00000046790	missense	Y/H	102	Olfr1341	ENSMUST00000215117.2:c.304T>C	ENSMUSP00000149466.1:p.Tyr102His	H-2-Kb	9	7	5	VAQMHIFLV	VAQMYIFLV	NetMHC	354.8	239.97	0.676	183	0.366	498.042	380.269	0.764	239.97	354.8	382	584.1	378.5384504	472.1826226	417.1094219	523.901932	M7_p20	1.5	1.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.351	183	0	0	NA	4qD2.1	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr4	41121239	41121239	A	G	ENSMUST00000030138.8	1	ENSMUSG00000028430	missense	V/A	339	Nol6	ENSMUST00000030138.8:c.1016T>C	ENSMUSP00000030138.8:p.Val339Ala	H-2-Kb	9	10	2	KAWLRQREL	KVWLRQREL	NetMHC	411.44	379.85	0.923	67	0.239	461.856	516.33	1.118	379.85	411.44	523.2	470.7	509.4598929	453.0123063	594.6343592	514.3396441	M7_p20	-1.328571429	-1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.288	67	0	0	NA	4qA5	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr4	125641560	125641560	T	C	ENSMUST00000030676.7	1	ENSMUSG00000001985	missense	M/T	250	Grik3	ENSMUST00000030676.7:c.749T>C	ENSMUSP00000030676.7:p.Met250Thr	H-2-Kb	9	11	1	TMTEYYHFI	MMTEYYHFI	NetMHCpan	222.7	208.8	0.938	107	0.224	286.573	314.364	1.097	429.61	412.07	208.8	222.7	295.876178	291.1454451	332.8511027	282.000579	M7_p20	-0.385714286	-0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.234	107	0	0	NA	4qD2.2	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr5	24415437	24415437	AG	A	ENSMUST00000196296.1	5	ENSMUSG00000038276	FS	Q/X	195	Asic3	ENSMUST00000196296.1:c.589del	ENSMUSP00000143083.1:p.Ala197GlnfsTer77	H-2-Db	9	59	0	TARRNPLPL	NA	SMM	164.672	NA	NA	49	0.143	227.965	NA	NA	NA	391.53	NA	273.3	NA	164.6720909	NA	182.6291089	M7_p20	-1.157142857	-1.157142857	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Vardict	2	0.159	49	0	0	NA	5qA3	chr5-16012095-32990866	4	2	2	0.9	4.205340083	NA	1	0.742943415	sgMsh2	cell line
chr5	3836853	3836853	A	G	ENSMUST00000080085.8	1	ENSMUSG00000000600	missense	S/G	701	Krit1	ENSMUST00000080085.8:c.2101A>G	ENSMUSP00000078985.4:p.Ser701Gly	H-2-Db	10	10	2	HGMENKMSFI	HSMENKMSFI	NetMHC	64.23	26.07	0.406	119	0.261	378.895	309.112	0.816	26.07	64.23	62	152.1	556.2243536	605.6894373	620.3974442	617.5469768	M7_p20	-0.357142857	-0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.289	119	0	0	NA	5qA1	chr5-3344373-14859185	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr5	16359015	16359015	G	A	ENSMUST00000039370.13	1	ENSMUSG00000040118	missense	D/N	899	Cacna2d1	ENSMUST00000039370.13:c.2695G>A	ENSMUSP00000049457.7:p.Asp899Asn	H-2-Kb	8	8	4	KSYNYQSV	KSYDYQSV	NetMHC	6.19	12.68	2.048	80	0.25	17.147	27.778	1.62	12.68	6.19	15.4	11.4	40.15503419	22.89496585	51.49202839	28.88949831	M7_p20	-1	-1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.264	80	0	0	NA	5qA3	chr5-16012095-32990866	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr5	35087007	35087007	T	C	ENSMUST00000050709.3	1	ENSMUSG00000044716	missense	S/P	532	Dok7	ENSMUST00000050709.3:c.1594T>C	ENSMUSP00000059538.3:p.Ser532Pro	H-2-Kb	8	9	3	STPRYAQI	STSRYAQI	NetMHC	12.58	63.7	5.064	37	0.297	64.57	177.694	2.752	63.7	12.58	195.8	62.5	194.4195797	72.56713881	160.9681675	66.64076901	M7_p20	-0.757142857	-0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.292	37	0	0	NA	5qB2	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr5	10243912	10243912	T	A	ENSMUST00000081735.12	5	ENSMUSG00000069355	missense	K/I	96	Gm5152	ENSMUST00000081735.12:c.286A>T	ENSMUSP00000080432.6:p.Lys96Ile	H-2-Kb	8	11	1	INPFYEQL	KNPFYEQL	NetMHC	22.25	178.98	8.044	242	0.054	48.002	215.589	4.491	178.98	22.25	107.8	32.8	252.1970487	63.20333573	304.6070846	74.08665723	M7_p20	-0.971428571	-0.871428571	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Vardict	2	0.069	242	0	0	NA	5qA1	chr5-3344373-14859185	4	2	2	0.9	4.205340083	NA	1	0.322409406	sgMsh2	cell line
chr5	23496459	23496459	A	T	ENSMUST00000115128.7	5	ENSMUSG00000029004	missense	H/L	836	Kmt2e	ENSMUST00000115128.7:c.2507A>T	ENSMUSP00000110781.1:p.His836Leu	H-2-Kb	8	4	8	STILHRYL	STILHRYH	NetMHC	28.67	18992.06	662.437	116	0.233	52.546	9474.202	180.303	18992.06	28.67	12757.7	53.6	6190.70344	51.49202839	2665.262568	61.62259741	M7_p20	0.342857143	0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.216	116	0	0	NA	5qA3	chr5-16012095-32990866	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr5	3643522	3643522	T	C	ENSMUST00000119783.1	1	ENSMUSG00000007415	missense	S/G	216	Gatad1	ENSMUST00000119783.1:c.646A>G	ENSMUSP00000113271.1:p.Ser216Gly	H-2-Kb	8	14	6	FTSFFGAL	FTSFFSAL	NetMHCpan	84.6	48.2	0.57	82	0.329	138.265	84.851	0.614	69.3	145.69	48.2	84.6	100.4014535	130.8398387	122.3883275	150.2242346	M7_p20	1.328571429	1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.32	82	0	0	NA	5qA1	chr5-3344373-14859185	4	2	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr4	150897465	150897465	T	A	ENSMUST00000105674.7	5	ENSMUSG00000028964	missense	Y/F	139	Park7	ENSMUST00000105674.7:c.416A>T	ENSMUSP00000101299.1:p.Tyr139Phe	H-2-Kb	8	11	1	FSYSESRV	YSYSESRV	SMMPMBEC	135.75	171.688	1.265	29	0.345	244.427	279.259	1.143	332.19	316.77	385.1	417.5	226.3288934	172.0838049	171.6880231	135.7500506	M7_p20	-1.071428571	-1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.381	29	0	0	NA	4qE2	chr4-147681972-156223608	3	2	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr5	15032906	15032906	GA	G	ENSMUST00000167908.1	1	ENSMUSG00000091897	FS	F/X	11	Gm17019	ENSMUST00000167908.1:c.33del	ENSMUSP00000127520.1:p.Gln12ArgfsTer48	H-2-Kb	8	28	0	LTFHLRGM	NA	NetMHCpan	214.7	NA	NA	711	0.034	447.43	NA	NA	NA	506.91	NA	214.7	NA	495.1536674	NA	399.7053856	M7_p20	-0.042857143	0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.036	711	0	0	NA	5qA2	chr5-14910153-15714905	7	5	2	0.9	4.205340083	NA	1	0.168213603	sgMsh2	cell line
chr5	16618861	16618861	C	CA	ENSMUST00000199581.4	1	ENSMUSG00000028864	FS	-/X	685-686	Hgf	ENSMUST00000199581.4:c.2059dup	ENSMUSP00000143424.1:p.Met687AsnfsTer59	H-2-Kb	8	31	0	SSWYFCSS	NA	SMM	132.966	NA	NA	211	0.251	211.846	NA	NA	NA	521.79	NA	264.2	NA	132.965815	NA	159.4924025	M7_p20	0.1	0.1	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.242	211	0	0	NA	5qA3	chr5-16012095-32990866	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr4	145110843	145110843	A	G	ENSMUST00000036579.13	5	ENSMUSG00000020220	missense	L/P	2730	Vps13d	ENSMUST00000036579.13:c.8189T>C	ENSMUSP00000043240.7:p.Leu2730Pro	H-2-Kb	8	9	3	AEPTFSRL	AELTFSRL	SMMPMBEC	241.402	93.916	0.389	66	0.242	485.047	174.205	0.359	243.76	724.77	1066.5	3183.6	104.6501849	245.323979	93.91608928	241.4015198	M7_p20	-0.642857143	-0.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.268	66	0	0	NA	4qE1	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr5	10243912	10243912	T	A	ENSMUST00000081735.12	5	ENSMUSG00000069355	missense	K/I	96	Gm5152	ENSMUST00000081735.12:c.286A>T	ENSMUSP00000080432.6:p.Lys96Ile	H-2-Kb	9	10	2	KINPFYEQL	KKNPFYEQL	NetMHC	89.39	1577.19	17.644	242	0.054	195.303	1362.817	6.978	1577.19	89.39	2674.3	102.7	1148.444468	323.6756285	953.3447955	287.9055255	M7_p20	-0.971428571	-0.871428571	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Vardict	2	0.069	242	0	0	NA	5qA1	chr5-3344373-14859185	4	2	2	0.9	4.205340083	NA	1	0.322409406	sgMsh2	cell line
chr5	35087007	35087007	T	C	ENSMUST00000050709.3	1	ENSMUSG00000044716	missense	S/P	532	Dok7	ENSMUST00000050709.3:c.1594T>C	ENSMUSP00000059538.3:p.Ser532Pro	H-2-Kb	9	8	4	ASTPRYAQI	ASTSRYAQI	NetMHC	109.33	62.84	0.575	37	0.297	205.599	158.66	0.772	62.84	109.33	229.2	215.2	179.5188262	308.3968972	137.8002483	195.99726	M7_p20	-0.757142857	-0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.292	37	0	0	NA	5qB2	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr5	16618861	16618861	C	CA	ENSMUST00000199581.4	1	ENSMUSG00000028864	FS	-/X	685-686	Hgf	ENSMUST00000199581.4:c.2059dup	ENSMUSP00000143424.1:p.Met687AsnfsTer59	H-2-Kb	9	32	0	SWYFCSSSI	NA	SMM	110.69	NA	NA	211	0.251	162.07	NA	NA	NA	127.69	NA	222.7	NA	110.690411	NA	196.4490803	M7_p20	0.871428571	0.871428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.242	211	0	0	NA	5qA3	chr5-16012095-32990866	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr5	3643522	3643522	T	C	ENSMUST00000119783.1	1	ENSMUSG00000007415	missense	S/G	216	Gatad1	ENSMUST00000119783.1:c.646A>G	ENSMUSP00000113271.1:p.Ser216Gly	H-2-Kb	9	13	7	RFTSFFGAL	RFTSFFSAL	NetMHC	151.7	76.94	0.507	82	0.329	257.266	163.349	0.635	76.94	151.7	94.9	169.3	231.7981684	345.2311699	384.8132346	490.0608399	M7_p20	1.328571429	1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.32	82	0	0	NA	5qA1	chr5-3344373-14859185	4	2	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr5	3818616	3818616	A	G	ENSMUST00000080085.8	1	ENSMUSG00000000600	missense	H/R	360	Krit1	ENSMUST00000080085.8:c.1079A>G	ENSMUSP00000078985.4:p.His360Arg	H-2-Kb	9	7	5	SSPLRFAAG	SSPLHFAAG	NetMHC	218.11	205.07	0.94	78	0.269	431.596	459.66	1.065	205.07	218.11	544.5	672.9	475.4556362	459.3143352	443.8640791	403.8778168	M7_p20	0.528571429	0.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.265	78	0	0	NA	5qA1	chr5-3344373-14859185	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr5	16618861	16618861	C	CA	ENSMUST00000199581.4	1	ENSMUSG00000028864	FS	-/X	685-686	Hgf	ENSMUST00000199581.4:c.2059dup	ENSMUSP00000143424.1:p.Met687AsnfsTer59	H-2-Kb	9	31	0	SSWYFCSSS	NA	SMM	211.402	NA	NA	211	0.251	263.69	NA	NA	NA	254.38	NA	273	NA	211.4024421	NA	341.3893746	M7_p20	0.1	0.1	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.242	211	0	0	NA	5qA3	chr5-16012095-32990866	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr4	143726070	143726070	A	G	ENSMUST00000078695.4	5	ENSMUSG00000046435	missense	T/A	24	Gm13078	ENSMUST00000078695.4:c.70A>G	ENSMUSP00000077761.4:p.Thr24Ala	H-2-Kb	9	10	2	LAISALPNL	LTISALPNL	NetMHCpan	254.7	300.1	1.178	81	0.765	387.777	507.146	1.308	378.8	314.12	300.1	254.7	635.4918716	461.4344339	904.1698059	700.2449734	M7_p20	1.142857143	1.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.755	81	0	0	NA	4qE1	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr4	147613749	147613749	T	G	ENSMUST00000105720.7	2	ENSMUSG00000066000	missense	I/L	168	Zfp979	ENSMUST00000105720.7:c.502A>C	ENSMUSP00000101345.1:p.Ile168Leu	H-2-Kb	9	3	9	ISLNQGTHL	ISLNQGTHI	NetMHC	325.18	1495.25	4.598	55	0.127	458.431	1423.225	3.105	1495.25	325.18	1351.2	351.6	1702.589693	685.6618719	1306.922997	565.2622723	M7_p20	-0.528571429	-0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.126	55	0	0	NA	4qE1	chr4-146067868-147676356	5.17241257	3.17241257	2	0.9	4.205340083	NA	1	0.588747612	sgMsh2	cell line
chr4	144271678	144271678	T	C	ENSMUST00000035757.12	1	ENSMUSG00000036749	missense	T/A	332	Pramel5	ENSMUST00000035757.12:c.994A>G	ENSMUSP00000044222.6:p.Thr332Ala	H-2-Kb	9	7	5	MSYTAFKPS	MSYTTFKPS	SMM	231.265	192.801	0.834	324	0.343	372.961	355.999	0.955	352.87	551.33	411.5	343.9	192.8013187	231.2650474	359.1286062	402.0221668	M7_p20	-0.528571429	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.342	324	0	0	NA	4qE1	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr5	8686194	8686194	AT	A	ENSMUST00000047753.4	1	ENSMUSG00000040584	FS	F/X	196	Abcb1a	ENSMUST00000047753.4:c.591del	ENSMUSP00000041204.4:p.Phe197LeufsTer5	H-2-Kb	9	7	6	AMATFLVVL	AMATFFGGF	SMM	205.641	113.008	0.55	185	0.292	256.042	110.604	0.432	107.1	582.18	108.2	301.1	113.0082111	205.6411387	139.0752983	210.9842323	M7_p20	2.842857143	2.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.309	185	0	0	NA	5qA1	chr5-3344373-14859185	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr5	77345396	77345396	T	C	ENSMUST00000031167.5	1	ENSMUSG00000029250	missense	M/T	1075	Polr2b	ENSMUST00000031167.5:c.3224T>C	ENSMUSP00000031167.5:p.Met1075Thr	H-2-Db	9	3	9	IQILNRQPT	IQILNRQPM	NetMHC	257.87	9.72	0.038	121	0.281	332.261	20.79	0.063	9.72	257.87	15.3	681.9	26.2796756	384.2554182	30.3088878	280.265732	M7_p20	-0.785714286	-0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.306	121	0	0	NA	5qC3.3	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr5	49987499	49987499	C	T	ENSMUST00000030971.6	1	ENSMUSG00000029090	missense	S/N	584	Adgra3	ENSMUST00000030971.6:c.1751G>A	ENSMUSP00000030971.5:p.Ser584Asn	H-2-Kb	8	9	3	VSNTFSSL	VSSTFSSL	NetMHC	6.05	7.18	1.187	46	0.261	9.733	17.653	1.814	7.18	6.05	12.2	12.2	23.10681036	9.262751223	24.70244836	10.20328459	M7_p20	0	0.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.31	46	0	0	NA	5qB3	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr5	122334415	122334415	G	C	ENSMUST00000049009.6	1	ENSMUSG00000038569	missense	L/V	228	Rad9b	ENSMUST00000049009.6:c.682C>G	ENSMUSP00000036177.6:p.Leu228Val	H-2-Kb	8	4	8	ITFCFKEV	ITFCFKEL	NetMHCpan	16.5	4.9	0.297	171	0.257	33.639	9.744	0.29	7.88	25.23	4.9	16.5	12.04314735	43.02689433	11.60753495	42.04748265	M7_p20	0.6	0.642857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.257	171	0	0	NA	5qF	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr5	128602175	128602175	T	G	ENSMUST00000117102.3	NA	ENSMUSG00000081683	missense	F/V	320	Fzd10	ENSMUST00000117102.3:c.958T>G	ENSMUSP00000114114.2:p.Phe320Val	H-2-Kb	8	6	6	LVLYYVGM	LVLYYFGM	NetMHCpan	67.9	82.6	1.216	78	0.192	231.943	180.72	0.779	115.55	159.98	82.6	67.9	312.4208431	400.6268017	245.8895091	303.9065077	M7_p20	1.585714286	1.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.184	78	0	0	NA	5qG1.3	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	0.859758417	sgMsh2	cell line
chr5	124646720	124646720	G	C	ENSMUST00000037865.12	1	ENSMUSG00000038023	missense	M/I	314	Atp6v0a2	ENSMUST00000037865.12:c.942G>C	ENSMUSP00000039737.8:p.Met314Ile	H-2-Kb	8	4	8	AIYHMLNI	AIYHMLNM	NetMHCpan	91.3	50.6	0.554	66	0.348	200.452	111.002	0.554	73.5	173.53	50.6	91.3	148.504632	240.2923806	155.1457917	227.3735801	M7_p20	0.957142857	0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.39	66	0	0	NA	5qF	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr5	122559719	122559719	T	C	ENSMUST00000031426.13	1	ENSMUSG00000029469	missense	H/R	565	Ift81	ENSMUST00000031426.13:c.1694A>G	ENSMUSP00000031426.7:p.His565Arg	H-2-Kb	8	8	4	SKYRYTNC	SKYHYTNC	SMM	88.867	165.859	1.866	223	0.278	164.978	520.745	3.156	824.85	208.13	921.7	665.9	165.8593656	88.86689373	216.6406749	121.8260042	M7_p20	-1.814285714	-1.814285714	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.279	223	0	0	NA	5qF	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr5	123029094	123029094	A	G	ENSMUST00000121652.7	1	ENSMUSG00000049686	missense	Q/R	110	Orai1	ENSMUST00000121652.7:c.329A>G	ENSMUSP00000113097.1:p.Gln110Arg	H-2-Kb	8	5	7	VAMVEVRL	VAMVEVQL	NetMHCpan	161.3	312.1	1.935	49	0.204	224.693	395.574	1.761	446.21	236.7	312.1	161.3	660.2980276	382.5956254	344.9371732	212.686537	M7_p20	1.128571429	1.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.206	49	0	0	NA	5qF	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	0.962555619	sgMsh2	cell line
chr5	114446235	114446235	A	G	ENSMUST00000112239.8	1	ENSMUSG00000041939	missense	N/S	52	Mvk	ENSMUST00000112239.8:c.155A>G	ENSMUSP00000107858.2:p.Asn52Ser	H-2-Kb	8	8	4	VSVSLPNI	VSVNLPNI	NetMHC	241.52	285.96	1.184	102	0.324	297.918	341.33	1.146	285.96	241.52	319.8	246.1	362.8607551	351.3500341	386.1357391	349.7357273	M7_p20	0.828571429	0.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.322	102	0	0	NA	5qF	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr5	115127330	115127330	A	G	ENSMUST00000060798.5	1	ENSMUSG00000046562	missense	F/L	148	Unc119b	ENSMUST00000060798.5:c.442T>C	ENSMUSP00000055475.5:p.Phe148Leu	H-2-Kb	8	5	7	YQFTPALL	YQFTPAFL	SMM	296.306	196.671	0.664	136	0.346	335.523	309.714	0.923	532.95	346.9	393.1	369.1	196.6708524	296.3056959	226.3288934	324.1455024	M7_p20	0.914285714	0.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.361	136	0	0	NA	5qF	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr5	53700084	53700084	A	G	ENSMUST00000031093.4	1	ENSMUSG00000029193	missense	V/A	328	Cckar	ENSMUST00000031093.4:c.983T>C	ENSMUSP00000031093.3:p.Val328Ala	H-2-Kb	8	8	4	VIVALFFL	VIVVLFFL	SMM	123.806	118.779	0.959	105	0.276	250.341	189.98	0.759	254.72	356.15	789.3	353.2	118.7790917	123.8055176	125.2391179	147.4823333	M7_p20	3.385714286	3.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.298	105	0	0	NA	5qC1	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr5	127650704	127650704	T	C	ENSMUST00000118139.2	1	ENSMUSG00000049971	missense	V/A	80	Glt1d1	ENSMUST00000118139.2:c.239T>C	ENSMUSP00000113864.1:p.Val80Ala	H-2-Kb	8	5	7	HSIPFGAI	HSIPFGVI	NetMHCpan	293.7	660.3	2.248	52	0.231	460.739	1062.469	2.306	2797.35	496.24	660.3	293.7	1166.11129	495.1536674	958.826437	426.324214	M7_p20	1.542857143	1.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.229	52	0	0	NA	5qG1.2	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr5	44541790	44541790	T	C	ENSMUST00000070748.9	1	ENSMUSG00000039706	missense	Y/C	102	Ldb2	ENSMUST00000070748.9:c.305A>G	ENSMUSP00000067737.5:p.Tyr102Cys	H-2-Kb	8	6	6	VTDLYCIL	VTDLYYIL	SMM	140.197	103.214	0.736	238	0.277	259.244	165.93	0.64	223.19	600.89	199.2	346.8	103.2143305	140.197413	132.6600022	171.6880231	M7_p20	1.3	1.357142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.287	238	0	0	NA	5qB3	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr5	53642073	53642073	GA	G	ENSMUST00000037618.12	1	ENSMUSG00000039191	FS	K/X	108	Rbpj	ENSMUST00000037618.12:c.330del	ENSMUSP00000040694.6:p.Glu111SerfsTer21	H-2-Kb	8	24	0	KSLNPVRL	NA	SMM	339.422	NA	NA	154	0.338	495.706	NA	NA	NA	602.6	NA	1460.6	NA	339.4220093	NA	388.8123042	M7_p20	0.2	0.2	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;Vardict	3	0.326	154	0	0	NA	5qC1	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr5	128602175	128602175	T	G	ENSMUST00000117102.3	NA	ENSMUSG00000081683	missense	F/V	320	Fzd10	ENSMUST00000117102.3:c.958T>G	ENSMUSP00000114114.2:p.Phe320Val	H-2-Kb	8	4	8	VFLVLYYV	VFLVLYYF	SMM	220.161	1001.705	4.55	78	0.192	469.155	1030.407	2.196	1056.8	648.75	5057.8	2653.3	1001.705365	220.1608027	1004.014535	289.5609548	M7_p20	2.314285714	2.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.184	78	0	0	NA	5qG1.3	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	0.859758417	sgMsh2	cell line
chr5	115127330	115127330	A	G	ENSMUST00000060798.5	1	ENSMUSG00000046562	missense	F/L	148	Unc119b	ENSMUST00000060798.5:c.442T>C	ENSMUSP00000055475.5:p.Phe148Leu	H-2-Kb	9	3	9	VRYQFTPAL	VRYQFTPAF	NetMHC	25.89	145.31	5.613	136	0.346	64.362	149.784	2.327	145.31	25.89	263.6	60	115.9070894	68.72424857	154.2588183	89.17641311	M7_p20	0.185714286	0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.361	136	0	0	NA	5qF	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr5	108797917	108797917	T	A	ENSMUST00000172140.2	5	ENSMUSG00000090961	missense	K/M	608	Vmn2r8	ENSMUST00000172140.2:c.1823A>T	ENSMUSP00000126953.1:p.Lys608Met	H-2-Kb	9	5	7	VTFVKYMDT	VTFVKYKDT	NetMHC	118.73	352.78	2.971	739	0.258	133.741	296.916	2.22	352.78	118.73	835.9	251.6	241.0515897	148.2893631	183.7595844	119.1927939	M7_p20	-0.071428571	1.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.259	739	0	0	NA	5qF	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr5	87887345	87887345	C	T	ENSMUST00000129757.8	5	ENSMUSG00000009580	missense	P/L	56	Odam	ENSMUST00000129757.8:c.167C>T	ENSMUSP00000117898.2:p.Pro56Leu	H-2-Kb	9	7	5	SWIPLFPGF	SWIPPFPGF	SMM	167.151	225.481	1.349	39	0.231	248.263	377.632	1.521	237.36	193.66	1017.7	578.5	225.4810248	167.1513929	517.9048762	302.8656361	M7_p20	1.471428571	1.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.259	39	0	0	NA	5qE1	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr5	87887345	87887345	C	T	ENSMUST00000129757.8	5	ENSMUSG00000009580	missense	P/L	56	Odam	ENSMUST00000129757.8:c.167C>T	ENSMUSP00000117898.2:p.Pro56Leu	H-2-Kb	9	3	9	GAFNSWIPL	GAFNSWIPP	SMMPMBEC	199.182	1466.392	7.362	39	0.231	221.206	6480.976	29.298	11495.56	212.21	12317	257.9	1061.964502	230.202481	1466.391721	199.1819593	M7_p20	0.614285714	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.259	39	0	0	NA	5qE1	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr5	100783064	100783064	T	C	ENSMUST00000044684.13	1	ENSMUSG00000035266	missense	T/A	607	Helq	ENSMUST00000044684.13:c.1819A>G	ENSMUSP00000041599.7:p.Thr607Ala	H-2-Kb	9	3	9	IAYHHSGLA	IAYHHSGLT	NetMHC	247.31	291.01	1.177	91	0.242	252.751	227.555	0.9	291.01	247.31	501.5	312.5	164.1005362	254.7475407	163.0234201	250.7552301	M7_p20	-0.471428571	-0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.279	91	0	0	NA	5qE4	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr5	124646720	124646720	G	C	ENSMUST00000037865.12	1	ENSMUSG00000038023	missense	M/I	314	Atp6v0a2	ENSMUST00000037865.12:c.942G>C	ENSMUSP00000039737.8:p.Met314Ile	H-2-Kb	9	3	9	KAIYHMLNI	KAIYHMLNM	NetMHCpan	142.3	108.5	0.762	66	0.348	457.411	270.709	0.592	183.23	299.29	108.5	142.3	358.1871488	676.2542383	360.7862685	615.5310989	M7_p20	0.957142857	0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.39	66	0	0	NA	5qF	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr5	110303958	110303958	A	G	ENSMUST00000007296.11	1	ENSMUSG00000007080	missense	T/A	889	Pole	ENSMUST00000007296.11:c.2665A>G	ENSMUSP00000007296.5:p.Thr889Ala	H-2-Kb	9	10	2	LAISYPGAM	LTISYPGAM	NetMHC	321.94	443.75	1.378	170	0.165	444.326	551.545	1.241	443.75	321.94	412.2	409.9	659.3408748	478.7513372	692.2293355	536.1051757	M7_p20	0.585714286	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.188	170	0	0	NA	5qF	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	0.878448817	sgMsh2	cell line
chr5	53700084	53700084	A	G	ENSMUST00000031093.4	1	ENSMUSG00000029193	missense	V/A	328	Cckar	ENSMUST00000031093.4:c.983T>C	ENSMUSP00000031093.3:p.Val328Ala	H-2-Kb	9	10	2	VALFFLCWM	VVLFFLCWM	SMM	75.008	84.355	1.125	105	0.276	212.356	265.535	1.25	414.59	323.96	871.7	448.6	84.35483883	75.00841699	116.4796347	100.7511472	M7_p20	2.385714286	3.1	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.298	105	0	0	NA	5qC1	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr5	122559719	122559719	T	C	ENSMUST00000031426.13	1	ENSMUSG00000029469	missense	H/R	565	Ift81	ENSMUST00000031426.13:c.1694A>G	ENSMUSP00000031426.7:p.His565Arg	H-2-Kb	9	8	4	SKYRYTNCM	SKYHYTNCM	SMM	345.231	307.688	0.891	223	0.278	387.24	525.106	1.356	727.92	396.69	751.5	482.5	307.6876041	345.2311699	322.2923521	377.7896015	M7_p20	-0.985714286	-0.985714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.279	223	0	0	NA	5qF	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr5	128602175	128602175	T	G	ENSMUST00000117102.3	NA	ENSMUSG00000081683	missense	F/V	320	Fzd10	ENSMUST00000117102.3:c.958T>G	ENSMUSP00000114114.2:p.Phe320Val	H-2-Kb	9	5	7	FLVLYYVGM	FLVLYYFGM	SMMPMBEC	298.023	330.56	1.109	78	0.192	376.102	368.465	0.98	406.37	422.51	1212.2	922.2	299.3022626	329.6932077	330.5597718	298.0231495	M7_p20	1.585714286	2.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.184	78	0	0	NA	5qG1.3	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	0.859758417	sgMsh2	cell line
chr5	128601265	128601265	A	G	ENSMUST00000117102.3	NA	ENSMUSG00000081683	missense	I/M	16	Fzd10	ENSMUST00000117102.3:c.48A>G	ENSMUSP00000114114.2:p.Ile16Met	H-2-Kb	9	9	3	VMMGSCTAI	VMIGSCTAI	SMMPMBEC	459.462	483.337	1.052	16	0.312	484.839	559.431	1.154	618.7	507.18	1098.8	926.3	500.1612019	462.4981501	483.3369531	459.4624246	M7_p20	1.257142857	1.257142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.385	16	0	0	NA	5qG1.3	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr5	129845765	129845765	A	G	ENSMUST00000031402.11	5	ENSMUSG00000029447	missense	N/S	515	Cct6a	ENSMUST00000031402.11:c.1544A>G	ENSMUSP00000158738.1:p.Asn515Ser	H-2-Db	9	10	2	TSILLVDEI	TNILLVDEI	SMMPMBEC	163.897	1015.243	6.194	339	0.221	196.247	1821.823	9.283	3742.47	206.02	2391.6	244.6	1252.045178	186.4747356	1015.242991	163.896621	M7_p20	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.228	339	0	0	NA	5qG1.3	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr6	43167977	43167977	G	T	ENSMUST00000205175.2	5	ENSMUSG00000071481	missense	K/N	306	Olfr437	ENSMUST00000205175.2:c.918G>T	ENSMUSP00000145490.1:p.Lys306Asn	H-2-Db	9	13	5	RALQNKRSV	RALQKKRSV	SMM	153.681	4995.972	32.509	76	0.303	206.324	11301.911	54.778	20445.39	223.6	16256.8	364.5	4995.972049	153.6809371	6347.021946	189.0470915	M7_p20	-1.171428571	-1.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.291	76	0	0	NA	6qB2.1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr6	42357896	42357896	GT	G	ENSMUST00000164375.3	1	ENSMUSG00000029860	FS	C/X	545	Zyx	ENSMUST00000164375.3:c.1637del	ENSMUSP00000126622.1:p.Phe546SerfsTer110	H-2-Kb	8	96	0	HAYGFKPL	NA	NetMHC	16.1	NA	NA	158	0.222	35.719	NA	NA	NA	16.1	NA	26.9	NA	56.59003988	NA	44.53895263	M7_p20	0.171428571	0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.23	158	0	0	NA	6qB2.1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	8	4	8	VLVSYTRL	VLVSYTRI	NetMHC	19.39	171.38	8.839	143	0.266	31.763	209.772	6.604	171.38	19.39	99.5	20.3	348.1288376	53.67103866	248.1646968	43.22549746	M7_p20	0.642857143	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.262	143	0	0	NA	6qB2.1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr6	41059465	41059465	G	A	ENSMUST00000103265.4	NA	ENSMUSG00000107486	missense	C/Y	8	Trbv4	ENSMUST00000103265.4:c.23G>A	ENSMUSP00000144909.1:p.Cys8Tyr	H-2-Kb	8	6	3	LSYVAFCL	LSCVAFCL	NetMHC	38.35	2963.86	77.284	236	0.182	79.509	2202.556	27.702	2963.86	38.35	3210.1	53.4	1441.252256	122.3883275	1051.332282	105.6185011	M7_p20	1.857142857	1.857142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.21	236	0	0	NA	6qB1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.981246019	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	8	6	6	VSYTRLLV	VSYTRILV	NetMHCpan	35.2	39.9	1.134	143	0.266	94.957	84.621	0.891	32.04	39.69	39.9	35.2	129.3421274	150.2242346	135.1263357	158.7596015	M7_p20	0.642857143	0.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.262	143	0	0	NA	6qB2.1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr6	38818458	38818458	T	C	ENSMUST00000161779.7	1	ENSMUSG00000061436	missense	K/R	292	Hipk2	ENSMUST00000161779.7:c.875A>G	ENSMUSP00000124133.1:p.Lys292Arg	H-2-Kb	8	8	4	KQNRFSPL	KQNKFSPL	NetMHC	61.41	154.24	2.512	172	0.198	64.826	136.646	2.108	154.24	61.41	353.3	182.8	116.611129	64.37837347	119.0529058	65.27396586	M7_p20	-1.042857143	-1.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.219	172	0	0	NA	6qB1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr6	7863979	7863979	GT	G	ENSMUST00000040159.5	1	ENSMUSG00000042460	FS	F/X	20	C1galt1	ENSMUST00000040159.5:c.65del	ENSMUSP00000047931.4:p.Leu22TyrfsTer6	H-2-Kb	8	7	7	SAIGFFYV	SAIGFFLC	NetMHCpan	57.3	1444.2	25.204	93	0.237	103.388	1418.262	13.718	3373.28	68.82	1444.2	57.3	1136.946424	137.9558114	1392.323008	151.6142424	M7_p20	2.057142857	2.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2366	93	0	0	NA	6qA1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr6	38982203	38982203	T	C	ENSMUST00000003017.12	1	ENSMUSG00000029925	missense	F/L	107	Tbxas1	ENSMUST00000003017.12:c.319T>C	ENSMUSP00000003017.6:p.Phe107Leu	H-2-Kb	8	4	8	LVENFSNL	LVENFSNF	SMMPMBEC	88.255	1108.511	12.56	359	0.273	120.109	1881.33	15.664	2784.54	111.47	1669.8	195.6	2092.859144	128.7478543	1108.510982	88.25513833	M7_p20	-0.071428571	-0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.27	359	0	0	NA	6qB1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr6	41059465	41059465	G	A	ENSMUST00000103265.4	NA	ENSMUSG00000107486	missense	C/Y	8	Trbv4	ENSMUST00000103265.4:c.23G>A	ENSMUSP00000144909.1:p.Cys8Tyr	H-2-Kb	8	7	2	SYVAFCLL	SCVAFCLL	NetMHCpan	77.4	267.2	3.452	236	0.182	180.57	305.061	1.689	558.92	115.25	267.2	77.4	338.6413603	245.8895091	271.4813499	268.3737286	M7_p20	2.514285714	2.514285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.21	236	0	0	NA	6qB1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.981246019	sgMsh2	cell line
chr6	18226001	18226001	T	C	ENSMUST00000045706.11	1	ENSMUSG00000041301	missense	F/S	316	Cftr	ENSMUST00000045706.11:c.947T>C	ENSMUSP00000049228.5:p.Phe316Ser	H-2-Kb	8	8	4	SGFSVVFL	SGFFVVFL	SMM	85.063	78.116	0.918	196	0.23	107.341	91.852	0.856	191.57	116.34	87.6	127.1	78.11600059	85.06286381	96.10367602	98.3422182	M7_p20	2.371428571	2.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.232	196	0	0	NA	6qA2	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr6	18226001	18226001	T	C	ENSMUST00000045706.11	1	ENSMUSG00000041301	missense	F/S	316	Cftr	ENSMUST00000045706.11:c.947T>C	ENSMUSP00000049228.5:p.Phe316Ser	H-2-Kb	8	10	2	FSVVFLSV	FFVVFLSV	NetMHC	146.24	1478.79	10.112	196	0.23	163.657	951.578	5.814	1478.79	146.24	4435.5	231.2	393.3145385	168.5543635	424.3654321	158.7596015	M7_p20	2.514285714	2.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.232	196	0	0	NA	6qA2	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr6	36524565	36524565	G	T	ENSMUST00000172278.7	1	ENSMUSG00000045613	missense	K/N	452	Chrm2	ENSMUST00000172278.7:c.1356G>T	ENSMUSP00000130874.1:p.Lys452Asn	H-2-Kb	8	8	4	KTFNHLLM	KTFKHLLM	NetMHCpan	75.3	70.4	0.935	173	0.231	235.527	263.738	1.12	204.82	197.06	70.4	75.3	322.6561891	273.9933359	362.8607551	332.4604589	M7_p20	0.7	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.243	173	0	0	NA	6qB1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr5	142451467	142451467	A	G	ENSMUST00000072837.6	1	ENSMUSG00000056493	missense	N/S	346	Foxk1	ENSMUST00000072837.6:c.1037A>G	ENSMUSP00000072616.5:p.Asn346Ser	H-2-Kb	8	10	2	LSRYFIKV	LNRYFIKV	NetMHCpan	133.4	160.9	1.206	88	0.273	289.37	648.139	2.24	617.48	246.28	160.9	133.4	678.797134	367.0624846	693.0107956	332.4604589	M7_p20	0.142857143	0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.286	88	0	0	NA	5qG2	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr5	142472335	142472335	A	C	ENSMUST00000038699.12	1	ENSMUSG00000039623	missense	D/A	421	Ap5z1	ENSMUST00000038699.12:c.1262A>C	ENSMUSP00000041863.8:p.Asp421Ala	H-2-Kb	8	11	1	ASHFLSLL	DSHFLSLL	NetMHCpan	104.9	1978.2	18.858	69	0.217	316.048	1993.045	6.306	4351.3	259.07	1978.2	104.9	1818.61178	387.0258739	2007.890385	373.0267702	M7_p20	1.342857143	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.255	69	0	0	NA	5qG2	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr6	18405230	18405230	T	C	ENSMUST00000090601.11	1	ENSMUSG00000000416	missense	Y/C	1090	Cttnbp2	ENSMUST00000090601.11:c.3269A>G	ENSMUSP00000088089.5:p.Tyr1090Cys	H-2-Kb	8	7	5	SSVTCASM	SSVTYASM	NetMHC	276.55	6.31	0.023	464	0.188	362.299	24.523	0.068	6.31	276.55	15.8	475.5	35.70590129	399.7053856	33.24604589	324.8927349	M7_p20	1.157142857	1.157142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.194	464	0	0	NA	6qA2	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.906484418	sgMsh2	cell line
chr6	23969343	23969343	A	G	ENSMUST00000062463.3	NA	ENSMUSG00000043865	missense	S/P	240	Tas2r118	ENSMUST00000062463.3:c.718T>C	ENSMUSP00000053700.3:p.Ser240Pro	H-2-Kb	8	7	5	TFFTPYFL	TFFTSYFL	SMM	135.75	97.217	0.716	242	0.236	250.491	178.628	0.713	321.44	393.85	219.3	307.9	97.21650414	135.7500506	137.9558114	193.0812048	M7_p20	1.228571429	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	242	0	0	NA	6qA3.1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr5	139813029	139813030	CT	GC	ENSMUST00000182839.1	3	ENSMUSG00000098140	missense	S/A	127	Gm26938	ENSMUST00000182839.1:c.379_380delinsGC	ENSMUSP00000138120.1:p.Ser127Ala	H-2-Kb	8	6	6	QLFLTAAL	QLFLTSAL	SMM	303.907	686.657	2.259	32	0.25	391.643	788.911	2.014	1092.12	468.7	830.1	487	686.6572344	303.9065077	747.7217263	314.5864409	M7_p20	2.442857143	2.442857143	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.291	32	0	0	NA	5qG2	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr6	7863979	7863979	GT	G	ENSMUST00000040159.5	1	ENSMUSG00000042460	FS	F/X	20	C1galt1	ENSMUST00000040159.5:c.65del	ENSMUSP00000047931.4:p.Leu22TyrfsTer6	H-2-Kb	8	8	6	AIGFFYVL	AIGFFLCS	SMM	203.114	5620.048	27.669	93	0.237	208.426	10027.748	48.112	17473.53	611.87	13528.1	212.8	5620.047679	203.114066	6527.396586	204.0515979	M7_p20	2.342857143	2.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2366	93	0	0	NA	6qA1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr5	142472335	142472335	A	C	ENSMUST00000038699.12	1	ENSMUSG00000039623	missense	D/A	421	Ap5z1	ENSMUST00000038699.12:c.1262A>C	ENSMUSP00000041863.8:p.Asp421Ala	H-2-Kb	8	10	2	FASHFLSL	FDSHFLSL	NetMHCpan	141.3	3750.8	26.545	69	0.217	478.389	3001.845	6.275	9890.2	763.7	3750.8	141.3	2252.890066	471.7805149	2176.406428	484.9980584	M7_p20	1.057142857	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.255	69	0	0	NA	5qG2	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr6	23969343	23969343	A	G	ENSMUST00000062463.3	NA	ENSMUSG00000043865	missense	S/P	240	Tas2r118	ENSMUST00000062463.3:c.718T>C	ENSMUSP00000053700.3:p.Ser240Pro	H-2-Kb	8	4	8	TFFTFFTP	TFFTFFTS	SMM	179.366	98.116	0.547	242	0.236	380.318	326.834	0.859	1485.04	1110.12	507.2	549.9	98.11603738	179.3659491	146.4670721	210.7366151	M7_p20	1.171428571	1.3	FALSE	FALSE	TRUE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	242	0	0	NA	6qA3.1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr6	7863979	7863979	GT	G	ENSMUST00000040159.5	1	ENSMUSG00000042460	FS	F/X	20	C1galt1	ENSMUST00000040159.5:c.65del	ENSMUSP00000047931.4:p.Leu22TyrfsTer6	H-2-Kb	8	9	5	IGFFYVLN	IGFFLCSQ	SMM	64.378	1562.212	24.266	93	0.237	272.735	2144.606	7.863	5387.49	2507.08	2727	472.4	1562.21211	64.37837347	714.0687051	73.07015019	M7_p20	1.2	2.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2366	93	0	0	NA	6qA1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr6	41059465	41059465	G	A	ENSMUST00000103265.4	NA	ENSMUSG00000107486	missense	C/Y	8	Trbv4	ENSMUST00000103265.4:c.23G>A	ENSMUSP00000144909.1:p.Cys8Tyr	H-2-Kb	9	6	3	LSYVAFCLL	LSCVAFCLL	NetMHC	12.4	422.88	34.103	236	0.182	30.943	494.808	15.991	422.88	12.4	541.3	17	511.811453	44.88590645	477.8042407	66.56562285	M7_p20	2.514285714	2.514285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.21	236	0	0	NA	6qB1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.981246019	sgMsh2	cell line
chr5	146834249	146834249	CT	C	ENSMUST00000035983.11	1	ENSMUSG00000041453	FS	P/X	18	Rpl21	ENSMUST00000035983.11:c.57del	ENSMUSP00000041652.5:p.Phe19LeufsTer22	H-2-Kb	9	4	9	TRYMFSRPL	TRYMFSRPF	NetMHC	21.65	112.57	5.2	270	0.196	70.47	156.013	2.214	112.57	21.65	137.4	37.4	174.6264398	103.5404385	246.1784313	142.3147781	M7_p20	0.042857143	0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.201	270	0	0	NA	5qG3	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	0.939192619	sgMsh2	cell line
chr6	7863979	7863979	GT	G	ENSMUST00000040159.5	1	ENSMUSG00000042460	FS	F/X	20	C1galt1	ENSMUST00000040159.5:c.65del	ENSMUSP00000047931.4:p.Leu22TyrfsTer6	H-2-Kb	9	7	7	SAIGFFYVL	SAIGFFLCS	NetMHCpan	16.9	2015.2	119.243	93	0.237	48.34	1212.348	25.08	3254.89	31.2	2015.2	16.9	271.0878168	65.48020042	409.4963169	79.84541822	M7_p20	2.342857143	2.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2366	93	0	0	NA	6qA1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	9	3	9	LVLVSYTRL	LVLVSYTRI	NetMHC	46.33	202.94	4.38	143	0.266	99.281	285.444	2.875	202.94	46.33	207.6	48.9	371.6293451	149.6614677	363.2871195	157.1267038	M7_p20	0.642857143	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.262	143	0	0	NA	6qB2.1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr6	38982203	38982203	T	C	ENSMUST00000003017.12	1	ENSMUSG00000029925	missense	F/L	107	Tbxas1	ENSMUST00000003017.12:c.319T>C	ENSMUSP00000003017.6:p.Phe107Leu	H-2-Kb	9	3	9	VLVENFSNL	VLVENFSNF	NetMHC	52.53	313.76	5.973	359	0.273	222.433	495.007	2.225	313.76	52.53	154.3	53.8	676.2542383	400.9682638	676.4722721	391.0659467	M7_p20	-0.071428571	1.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.27	359	0	0	NA	6qB1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr6	18226001	18226001	T	C	ENSMUST00000045706.11	1	ENSMUSG00000041301	missense	F/S	316	Cftr	ENSMUST00000045706.11:c.947T>C	ENSMUSP00000049228.5:p.Phe316Ser	H-2-Kb	9	10	2	FSVVFLSVL	FFVVFLSVL	NetMHC	69.25	470.62	6.796	196	0.23	164.327	422.904	2.574	470.62	69.25	2472.5	174.8	284.5181656	153.854428	375.1889162	186.7454375	M7_p20	3.171428571	3.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.232	196	0	0	NA	6qA2	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr6	40612821	40612821	CA	C	ENSMUST00000076565.2	NA	ENSMUSG00000058250	FS	C/X	164	Tas2r138	ENSMUST00000076565.2:c.490del	ENSMUSP00000075876.2:p.Cys164AlafsTer13	H-2-Kb	9	5	7	CLWDFFADL	CLWDFFCRS	NetMHC	103.62	3815.78	36.825	66	0.167	231.884	2401.986	10.359	3815.78	103.62	3432.3	158.1	783.6280984	327.4236157	1371.671136	305.6680173	M7_p20	0.471428571	1.328571429	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.188	66	0	0	NA	6qB1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.878448817	sgMsh2	cell line
chr5	131086045	131086045	A	G	ENSMUST00000086023.11	1	ENSMUSG00000034040	missense	Y/H	206	Galnt17	ENSMUST00000086023.11:c.616T>C	ENSMUSP00000083187.5:p.Tyr206His	H-2-Kb	9	11	1	HVHKRYPGL	YVHKRYPGL	SMM	154.565	98.653	0.638	64	0.109	178.483	95.626	0.536	57.72	173.63	92.6	394.1	98.65293264	154.5645878	108.4551052	183.3369491	M7_p20	-1.585714286	-1.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.142	64	0	0	NA	5qG2	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	0.663509213	sgMsh2	cell line
chr5	142472335	142472335	A	C	ENSMUST00000038699.12	1	ENSMUSG00000039623	missense	D/A	421	Ap5z1	ENSMUST00000038699.12:c.1262A>C	ENSMUSP00000041863.8:p.Asp421Ala	H-2-Kb	9	10	2	FASHFLSLL	FDSHFLSLL	NetMHC	190.64	4486.45	23.534	69	0.217	246.595	2634.748	10.685	4486.45	190.64	3910.4	200.7	1294.523683	292.4893114	1359.09558	371.7491635	M7_p20	1.342857143	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.255	69	0	0	NA	5qG2	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	9	4	8	VLVSYTRLL	VLVSYTRIL	NetMHCpan	118.1	254.3	2.153	143	0.266	338.726	712.479	2.103	683.46	204.18	254.3	118.1	741.4980274	473.271116	959.9530659	622.6586131	M7_p20	0.642857143	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.262	143	0	0	NA	6qB2.1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr6	18282507	18282507	T	A	ENSMUST00000045706.11	1	ENSMUSG00000041301	missense	F/I	1069	Cftr	ENSMUST00000045706.11:c.3205T>A	ENSMUSP00000049228.5:p.Phe1069Ile	H-2-Kb	9	3	9	RAFRRQTYI	RAFRRQTYF	NetMHCpan	149	131.2	0.881	153	0.176	343.782	287.14	0.835	233	215.23	131.2	149	341.2793414	502.4698412	353.3865369	472.3348608	M7_p20	-1.028571429	-1.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.185	153	0	0	NA	6qA2	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.864431017	sgMsh2	cell line
chr5	135121526	135121526	C	A	ENSMUST00000005507.9	1	ENSMUSG00000005373	missense	P/T	141	Mlxipl	ENSMUST00000005507.9:c.421C>A	ENSMUSP00000005507.3:p.Pro141Thr	H-2-Kb	9	11	1	TVCGFVTPL	PVCGFVTPL	NetMHCpan	152.6	3159	20.701	45	0.644	242.87	1969.514	8.109	3894.65	215.81	3159	152.6	780.0276543	423.7502818	634.234701	269.9292823	M7_p20	1.514285714	1.7	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.601	45	0	0	NA	5qG2	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr6	4756881	4756881	A	G	ENSMUST00000166678.1	5	ENSMUSG00000092035	missense	T/A	887	Peg10	ENSMUST00000166678.1:c.2659A>G	ENSMUSP00000127306.1:p.Thr887Ala	H-2-Kb	9	10	2	VAYNCRAPQ	VTYNCRAPQ	SMMPMBEC	155.686	201.025	1.291	90	0.167	256.873	337.294	1.313	416.89	326.63	3547.1	2769.3	257.6973782	187.1156015	201.0249672	155.6861575	M7_p20	-1.442857143	0.142857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.196	90	0	0	NA	6qA1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.915829618	sgMsh2	cell line
chr6	23969343	23969343	A	G	ENSMUST00000062463.3	NA	ENSMUSG00000043865	missense	S/P	240	Tas2r118	ENSMUST00000062463.3:c.718T>C	ENSMUSP00000053700.3:p.Ser240Pro	H-2-Kb	9	4	8	TFFTFFTPY	TFFTFFTSY	SMM	58.359	101.651	1.742	242	0.236	196.971	288.699	1.466	465.39	328.44	714.6	450.5	101.6506125	58.35929005	112.0082469	65.50131214	M7_p20	0.585714286	1.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	242	0	0	NA	6qA3.1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr5	142472335	142472335	A	C	ENSMUST00000038699.12	1	ENSMUSG00000039623	missense	D/A	421	Ap5z1	ENSMUST00000038699.12:c.1262A>C	ENSMUSP00000041863.8:p.Asp421Ala	H-2-Kb	9	9	3	LFASHFLSL	LFDSHFLSL	SMM	203.756	388.249	1.905	69	0.217	276.613	632.632	2.287	825.47	341.07	1414.4	280.8	388.2486909	203.7558094	439.7947088	272.4269072	M7_p20	1.057142857	1.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.255	69	0	0	NA	5qG2	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr6	38818458	38818458	T	C	ENSMUST00000161779.7	1	ENSMUSG00000061436	missense	K/R	292	Hipk2	ENSMUST00000161779.7:c.875A>G	ENSMUSP00000124133.1:p.Lys292Arg	H-2-Kb	9	7	5	LKQNRFSPL	LKQNKFSPL	NetMHC	346.05	529.23	1.529	172	0.198	459.514	702.894	1.53	529.23	346.05	2230.7	1526.9	755.2835049	504.7891366	650.5040428	414.2380608	M7_p20	-1.042857143	-1.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.219	172	0	0	NA	6qB1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr5	134135628	134135628	T	C	ENSMUST00000016088.8	1	ENSMUSG00000015944	missense	F/L	143	Castor2	ENSMUST00000016088.8:c.427T>C	ENSMUSP00000016088.8:p.Phe143Leu	H-2-Kb	9	3	9	VTHTLSSEL	VTHTLSSEF	NetMHC	346.45	965.45	2.787	62	0.194	425.657	893.137	2.098	965.45	346.45	1373.9	488.8	635.4918716	376.7992242	820.8239126	474.5150595	M7_p20	-0.2	0.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.243	62	0	0	NA	5qG2	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr6	27363252	27363252	A	G	ENSMUST00000115323.7	1	ENSMUSG00000024211	missense	Y/H	755	Grm8	ENSMUST00000115323.7:c.2263T>C	ENSMUSP00000110978.1:p.Tyr755His	H-2-Kb	9	7	5	CSLGHSILL	CSLGYSILL	SMM	204.696	164.101	0.802	208	0.188	364.907	235.996	0.647	182.09	365.69	295.7	809.6	164.1005362	204.6963035	289.9011913	364.1245828	M7_p20	1.642857143	1.642857143	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.179	208	0	0	NA	6qA3.1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.836395417	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	9	6	6	VSYTRLLVA	VSYTRILVA	NetMHCpan	129.9	163.6	1.259	143	0.266	176.155	270.535	1.536	712.71	415.25	163.6	129.9	323.6756285	203.287184	217.3952246	149.021867	M7_p20	1.014285714	1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.262	143	0	0	NA	6qB2.1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr6	43081545	43081545	T	C	ENSMUST00000103301.2	5	ENSMUSG00000076500	missense	Y/C	111	Gm20730	ENSMUST00000103301.2:c.332A>G	ENSMUSP00000100102.2:p.Tyr111Cys	H-2-Kb	9	10	4	GVYCCMQGL	GVYYCMQGL	SMMPMBEC	365.805	291.239	0.796	264	0.227	418.949	282.418	0.674	199.71	459.36	459.7	713.4	273.5961615	378.5384504	291.2393144	365.8053055	M7_p20	0.785714286	0.842857143	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.24	264	0	0	NA	6qB2.1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr6	18226001	18226001	T	C	ENSMUST00000045706.11	1	ENSMUSG00000041301	missense	F/S	316	Cftr	ENSMUST00000045706.11:c.947T>C	ENSMUSP00000049228.5:p.Phe316Ser	H-2-Kb	9	3	9	SAFFFSGFS	SAFFFSGFF	SMM	220.348	98.653	0.448	196	0.23	374.122	74.546	0.199	50.44	768.26	30.6	322.4	98.65293264	220.3484501	133.428929	425.8434778	M7_p20	1.314285714	1.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.232	196	0	0	NA	6qA2	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr6	7863979	7863979	GT	G	ENSMUST00000040159.5	1	ENSMUSG00000042460	FS	F/X	20	C1galt1	ENSMUST00000040159.5:c.65del	ENSMUSP00000047931.4:p.Leu22TyrfsTer6	H-2-Kb	9	9	5	IGFFYVLNS	NA	NetMHCpan	145.4	NA	NA	93	0.237	455.994	NA	NA	NA	1161.5	NA	145.4	NA	439.6529586	NA	472.3348608	M7_p20	1.142857143	2.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2366	93	0	0	NA	6qA1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr6	18226001	18226001	T	C	ENSMUST00000045706.11	1	ENSMUSG00000041301	missense	F/S	316	Cftr	ENSMUST00000045706.11:c.947T>C	ENSMUSP00000049228.5:p.Phe316Ser	H-2-Kb	10	3	9	SAFFFSGFSV	SAFFFSGFFV	NetMHCpan	115.9	223.7	1.93	196	0.23	343.911	357.521	1.04	308.73	197.67	223.7	115.9	476.7931419	490.1511207	406.3123284	553.171759	M7_p20	1.514285714	1.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.232	196	0	0	NA	6qA2	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr6	104774496	104774496	T	C	ENSMUST00000089215.11	1	ENSMUSG00000030092	missense	L/P	371	Cntn6	ENSMUST00000089215.11:c.1112T>C	ENSMUSP00000086623.5:p.Leu371Pro	H-2-Db	9	4	8	IQIENGTPI	IQIENGTLI	NetMHC	4.12	13.26	3.218	324	0.185	15.98	51.13	3.2	13.26	4.12	31.2	9.9	71.05914866	22.06073613	85.81634232	25.85651564	M7_p20	-0.1	-0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.185	324	0	0	NA	6qE1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.864431017	sgMsh2	cell line
chr6	122850369	122850369	TA	T	ENSMUST00000042081.8	1	ENSMUSG00000040552	FS	P/X	296	C3ar1	ENSMUST00000042081.8:c.888del	ENSMUSP00000048092.8:p.Thr297LeufsTer30	H-2-Db	9	4	9	SAHTELFPL	SAHTELFPT	NetMHCpan	218.3	4631	21.214	169	0.183	409.612	4501.197	10.989	10902.8	576.21	4631	218.3	4371.394485	424.2481918	2802.65732	394.9753567	M7_p20	0.2	0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.197	169	0	0	NA	6qF2	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.920502218	sgMsh2	cell line
chr6	122850369	122850369	TA	T	ENSMUST00000042081.8	1	ENSMUSG00000040552	FS	P/X	296	C3ar1	ENSMUST00000042081.8:c.888del	ENSMUSP00000048092.8:p.Thr297LeufsTer30	H-2-Db	10	26	0	IMLTNSRMTI	NA	NetMHC	60.3	NA	NA	169	0.183	487.762	NA	NA	NA	60.3	NA	280.1	NA	695.4245209	NA	814.0854636	M7_p20	-0.542857143	0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.197	169	0	0	NA	6qF2	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.920502218	sgMsh2	cell line
chr6	114307727	114307727	A	G	ENSMUST00000032454.7	1	ENSMUSG00000030310	missense	I/V	249	Slc6a1	ENSMUST00000032454.7:c.745A>G	ENSMUSP00000032454.5:p.Ile249Val	H-2-Kb	8	6	6	ATYPYVML	ATYPYIML	NetMHC	5.02	5.17	1.03	135	0.274	9.237	10.262	1.111	5.17	5.02	8	7	12.52391179	11.4746646	16.0597951	13.82738324	M7_p20	0.714285714	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.277	135	0	0	NA	6qE3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr6	48906651	48906651	C	T	ENSMUST00000162948.6	1	ENSMUSG00000029811	missense	T/I	487	Aoc1	ENSMUST00000162948.6:c.1460C>T	ENSMUSP00000124085.1:p.Thr487Ile	H-2-Kb	8	11	1	IGYVHATF	TGYVHATF	NetMHC	18.68	93.08	4.983	405	0.17	44.147	138.736	3.143	93.08	18.68	55.9	21.5	235.3639803	84.08915726	184.391119	66.79439184	M7_p20	0.457142857	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.187	405	0	0	NA	6qB2.3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.873776217	sgMsh2	cell line
chr6	122580767	122580767	AG	A	ENSMUST00000112586.7	1	ENSMUSG00000040613	FS	P/X	161	Apobec1	ENSMUST00000112586.7:c.482del	ENSMUSP00000108205.1:p.Pro161LeufsTer15	H-2-Kb	8	4	8	RNFVNYPL	RNFVNYPP	NetMHC	39.56	4956.24	125.284	172	0.221	63.522	2622.344	41.282	4956.24	39.56	2981.4	40.2	2102.519343	86.84403626	2263.288934	87.24489012	M7_p20	0.128571429	0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.221	172	0	0	NA	6qF1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr6	122850369	122850369	TA	T	ENSMUST00000042081.8	1	ENSMUSG00000040552	FS	P/X	296	C3ar1	ENSMUST00000042081.8:c.888del	ENSMUSP00000048092.8:p.Thr297LeufsTer30	H-2-Kb	8	14	0	LVVIYTPM	NA	NetMHCpan	73	NA	NA	169	0.183	177.665	NA	NA	NA	100.8	NA	73	NA	344.9371732	NA	254.5305993	M7_p20	1.6	1.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.197	169	0	0	NA	6qF2	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.920502218	sgMsh2	cell line
chr6	69648981	69648981	TG	T	ENSMUST00000198328.1	NA	ENSMUSG00000095753	FS	P/X	67	Igkv4-53	ENSMUST00000198328.1:c.201del	ENSMUSP00000143120.1:p.Lys68AsnfsTer?	H-2-Kb	8	30	0	VAVDLGPL	NA	NetMHC	195.68	NA	NA	387	0.209	249.541	NA	NA	NA	195.68	NA	227.6	NA	271.4813499	NA	281.6696149	M7_p20	1.157142857	1.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.217	387	0	0	NA	6qC1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr6	48990592	48990592	A	G	ENSMUST00000037696.5	1	ENSMUSG00000039215	missense	E/G	732	Svs1	ENSMUST00000037696.5:c.2195A>G	ENSMUSP00000045221.4:p.Glu732Gly	H-2-Kb	8	10	2	SGRFHGSL	SERFHGSL	SMM	239.188	1056.185	4.416	206	0.214	286.94	2609.437	9.094	5636.07	267.18	3880	306.7	1056.185011	239.1883374	1338.8749	313.8629122	M7_p20	-0.385714286	-0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.214	206	0	0	NA	6qB2.3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.99993642	sgMsh2	cell line
chr6	114307727	114307727	A	G	ENSMUST00000032454.7	1	ENSMUSG00000030310	missense	I/V	249	Slc6a1	ENSMUST00000032454.7:c.745A>G	ENSMUSP00000032454.5:p.Ile249Val	H-2-Kb	8	4	8	FSATYPYV	FSATYPYI	SMM	197.124	357.882	1.816	135	0.274	271.38	390.636	1.439	523.39	275.62	209.4	288.1	357.8821189	197.1242255	423.3894187	267.1406633	M7_p20	0.042857143	0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.277	135	0	0	NA	6qE3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr6	111358962	111358962	G	T	ENSMUST00000071076.12	5	ENSMUSG00000056755	missense	R/L	778	Grm7	ENSMUST00000071076.12:c.2333G>T	ENSMUSP00000064404.6:p.Arg778Leu	H-2-Kb	8	4	8	TVYAIKTL	TVYAIKTR	NetMHCpan	88.6	14145.4	159.655	196	0.27	373.746	12876.467	34.452	21757.77	380.43	14145.4	88.6	11110.66364	497.4391928	11607.53495	367.0624846	M7_p20	1.2	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.28	196	0	0	NA	6qE3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr6	70355899	70355899	T	C	ENSMUST00000103390.2	NA	ENSMUSG00000076589	missense	L/P	8	Igkv8-18	ENSMUST00000103390.2:c.23T>C	ENSMUSP00000100191.1:p.Leu8Pro	H-2-Kb	8	6	3	HVPMFLLL	HVLMFLLL	NetMHCpan	204.4	177.7	0.869	395	0.147	428.322	219.201	0.512	291.35	397.72	177.7	204.4	259.8603386	609.1720937	178.5418375	458.9231861	M7_p20	2.671428571	2.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.149	395	0	0	NA	6qC1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.696217414	sgMsh2	cell line
chr6	69648981	69648981	TG	T	ENSMUST00000198328.1	NA	ENSMUSG00000095753	FS	P/X	67	Igkv4-53	ENSMUST00000198328.1:c.201del	ENSMUSP00000143120.1:p.Lys68AsnfsTer?	H-2-Kb	8	43	0	AAWRLKML	NA	NetMHCpan	298.4	NA	NA	387	0.209	404.93	NA	NA	NA	398.01	NA	298.4	NA	545.4312289	NA	411.8508816	M7_p20	0.285714286	0.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.217	387	0	0	NA	6qC1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr6	102204002	102204002	C	T	ENSMUST00000203619.2	1	ENSMUSG00000030075	missense	G/E	744	Cntn3	ENSMUST00000203619.2:c.2231G>A	ENSMUSP00000145176.1:p.Gly744Glu	H-2-Kb	8	5	7	VAFRPLEV	VAFRPLGV	NetMHCpan	331.7	165.3	0.498	137	0.161	496.208	207.208	0.418	171.9	450.74	165.3	331.7	242.5157786	541.6765067	303.2075422	694.6083504	M7_p20	0.428571429	0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.184	137	0	0	NA	6qD3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.859758417	sgMsh2	cell line
chr6	50216364	50216364	A	C	ENSMUST00000031845.12	1	ENSMUSG00000029821	missense	S/A	418	Gsdme	ENSMUST00000031845.12:c.1252T>G	ENSMUSP00000031845.6:p.Ser418Ala	H-2-Kb	8	9	3	ISALCCLL	ISSLCCLL	SMM	267.141	509.026	1.905	378	0.153	368.066	617.218	1.677	725.41	474.56	756.5	451.2	509.0260401	267.1406633	451.5855118	284.9311953	M7_p20	2.485714286	2.585714286	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.166	378	0	0	NA	6qB2.3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.775651615	sgMsh2	cell line
chr6	68542226	68542226	A	G	ENSMUST00000168090.2	NA	ENSMUSG00000076525	missense	T/A	56	Igkv1-99	ENSMUST00000168090.2:c.166A>G	ENSMUSP00000132003.2:p.Thr56Ala	H-2-Kb	8	10	2	FAYLDWYL	FTYLDWYL	SMM	273.993	177.313	0.647	212	0.274	330.847	330.75	1	1700.12	1534.67	478.8	372.8	177.3127641	273.9933359	182.7006111	288.8949831	M7_p20	0.342857143	0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.272	212	0	0	NA	6qC1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr6	114307727	114307727	A	G	ENSMUST00000032454.7	1	ENSMUSG00000030310	missense	I/V	249	Slc6a1	ENSMUST00000032454.7:c.745A>G	ENSMUSP00000032454.5:p.Ile249Val	H-2-Kb	9	6	6	ATYPYVMLI	ATYPYIMLI	NetMHCpan	35.3	35.3	1	135	0.274	152.513	134.118	0.879	51.91	44.26	35.3	35.3	216.3266376	264.9171047	222.4590099	260.7654204	M7_p20	1.457142857	1.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.277	135	0	0	NA	6qE3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr6	122580767	122580767	AG	A	ENSMUST00000112586.7	1	ENSMUSG00000040613	FS	P/X	161	Apobec1	ENSMUST00000112586.7:c.482del	ENSMUSP00000108205.1:p.Pro161LeufsTer15	H-2-Kb	9	7	5	VNYPLQTKL	NA	NetMHCpan	21.6	NA	NA	172	0.221	76.549	NA	NA	NA	53.73	NA	21.6	NA	104.7393803	NA	99.36878965	M7_p20	-0.485714286	-0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.221	172	0	0	NA	6qF1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr6	114314446	114314446	A	C	ENSMUST00000032454.7	1	ENSMUSG00000030310	missense	K/T	560	Slc6a1	ENSMUST00000032454.7:c.1679A>C	ENSMUSP00000032454.5:p.Lys560Thr	H-2-Kb	9	3	9	MAYMFLTLT	MAYMFLTLK	NetMHC	87.78	855.63	9.747	56	0.071	110.794	620.695	5.602	855.63	87.78	854.8	109.1	353.2726369	112.4889855	386.5894518	127.4236379	M7_p20	1.371428571	1.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.104	56	0	0	NA	6qE3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.48595041	sgMsh2	cell line
chr6	114307727	114307727	A	G	ENSMUST00000032454.7	1	ENSMUSG00000030310	missense	I/V	249	Slc6a1	ENSMUST00000032454.7:c.745A>G	ENSMUSP00000032454.5:p.Ile249Val	H-2-Kb	9	5	7	SATYPYVML	SATYPYIML	NetMHC	145.84	148.94	1.021	135	0.274	299.561	314.537	1.05	148.94	145.84	409.6	363.1	254.7475407	260.0818226	374.3260056	339.0392667	M7_p20	0.714285714	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.277	135	0	0	NA	6qE3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr6	69648981	69648981	TG	T	ENSMUST00000198328.1	NA	ENSMUSG00000095753	FS	P/X	67	Igkv4-53	ENSMUST00000198328.1:c.201del	ENSMUSP00000143120.1:p.Lys68AsnfsTer?	H-2-Kb	9	44	0	AWRLKMLPL	NA	SMM	170.259	NA	NA	387	0.209	220.515	NA	NA	NA	202.66	NA	1334.9	NA	170.2589693	NA	238.3691237	M7_p20	0.471428571	0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.217	387	0	0	NA	6qC1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr6	108399280	108399280	C	T	ENSMUST00000032192.8	1	ENSMUSG00000030102	missense	R/W	1235	Itpr1	ENSMUST00000032192.8:c.3703C>T	ENSMUSP00000032192.6:p.Arg1235Trp	H-2-Kb	9	9	3	IMWLAHEFL	IMRLAHEFL	NetMHCpan	173.3	364.8	2.105	95	0.126	275.443	622.207	2.259	738.74	227.21	364.8	173.3	566.3827268	323.6756285	678.0317017	326.7758854	M7_p20	0.657142857	0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.145	95	0	0	NA	6qE1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.677527013	sgMsh2	cell line
chr6	78376435	78376435	G	A	ENSMUST00000089667.7	1	ENSMUSG00000068341	missense	H/Y	142	Reg3d	ENSMUST00000089667.7:c.424C>T	ENSMUSP00000087096.1:p.His142Tyr	H-2-Kb	9	10	2	AYHGYCAAL	AHHGYCAAL	NetMHC	233.75	211.3	0.904	181	0.171	376.342	460.876	1.225	211.3	233.75	464.4	454.2	563.7804345	406.5462879	457.3513865	346.1385739	M7_p20	0.714285714	0.714285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.163	181	0	0	NA	6qC3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.761633815	sgMsh2	cell line
chr6	57360638	57360638	T	C	ENSMUST00000227186.1	NA	ENSMUSG00000115644	missense	I/M	247	Vmn1r17	ENSMUST00000227186.1:c.741A>G	ENSMUSP00000154334.1:p.Ile247Met	H-2-Kb	9	3	9	VMYWVDFIM	VMYWVDFII	SMM	115.641	218.328	1.888	560	0.204	275.792	430.03	1.559	602.28	400.49	1029	521.4	218.3282833	115.6405104	257.7804634	151.0949676	M7_p20	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.201	560	0	0	NA	6qB3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.939192619	sgMsh2	cell line
chr6	122850369	122850369	TA	T	ENSMUST00000042081.8	1	ENSMUSG00000040552	FS	P/X	296	C3ar1	ENSMUST00000042081.8:c.888del	ENSMUSP00000048092.8:p.Thr297LeufsTer30	H-2-Kb	9	4	9	SAHTELFPL	SAHTELFPT	NetMHCpan	438.2	6282	14.336	169	0.183	442.376	4341.538	9.814	5757.24	443.07	6282	438.2	2553.347944	441.6823044	2925.83614	582.4383998	M7_p20	0.2	0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.197	169	0	0	NA	6qF2	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.920502218	sgMsh2	cell line
chr6	69648981	69648981	TG	T	ENSMUST00000198328.1	NA	ENSMUSG00000095753	FS	P/X	67	Igkv4-53	ENSMUST00000198328.1:c.201del	ENSMUSP00000143120.1:p.Lys68AsnfsTer?	H-2-Kb	9	42	0	SAAWRLKML	NA	SMM	294.517	NA	NA	387	0.209	402.388	NA	NA	NA	472.69	NA	862.6	NA	294.5167504	NA	332.0855664	M7_p20	0.285714286	0.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.217	387	0	0	NA	6qC1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr6	70355899	70355899	T	C	ENSMUST00000103390.2	NA	ENSMUSG00000076589	missense	L/P	8	Igkv8-18	ENSMUST00000103390.2:c.23T>C	ENSMUSP00000100191.1:p.Leu8Pro	H-2-Kb	9	5	4	THVPMFLLL	THVLMFLLL	NetMHCpan	259.7	349.3	1.345	395	0.147	445.938	313.396	0.703	477.99	647.98	349.3	259.7	259.483651	436.6264089	277.4917016	455.2500477	M7_p20	2.671428571	2.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.149	395	0	0	NA	6qC1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.696217414	sgMsh2	cell line
chr6	78376435	78376435	G	A	ENSMUST00000089667.7	1	ENSMUSG00000068341	missense	H/Y	142	Reg3d	ENSMUST00000089667.7:c.424C>T	ENSMUSP00000087096.1:p.His142Tyr	H-2-Kb	10	9	3	SAYHGYCAAL	SAHHGYCAAL	NetMHC	16.5	239.43	14.511	181	0.171	357.454	1524.234	4.264	239.43	16.5	388.6	23.3	2973.924919	793.1037439	2659.867482	691.6079869	M7_p20	0.714285714	0.714285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.163	181	0	0	NA	6qC3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.761633815	sgMsh2	cell line
chr6	142003500	142003500	A	G	ENSMUST00000181791.7	5	ENSMUSG00000079263	missense	L/P	50	Gm6614	ENSMUST00000181791.7:c.149T>C	ENSMUSP00000137696.1:p.Leu50Pro	H-2-Db	9	6	6	FGIGNPLLI	FGIGNLLLI	NetMHCpan	55.6	40	0.719	165	0.224	115.692	74.539	0.644	51.9	85.31	40	55.6	109.8044649	159.8159056	97.17845721	146.0730172	M7_p20	1.585714286	1.585714286	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.23	165	0	0	NA	6qG2	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr6	125024219	125024219	A	G	ENSMUST00000112427.7	5	ENSMUSG00000038346	missense	T/A	85	Zfp384	ENSMUST00000112427.7:c.253A>G	ENSMUSP00000108046.1:p.Thr85Ala	H-2-Db	9	9	3	SVAQNITVV	SVTQNITVV	NetMHC	131.61	172.76	1.313	120	0.225	428.38	485.493	1.133	172.76	131.61	321.5	189	649.5610871	667.7593842	649.486308	738.8733457	M7_p20	1	1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.263	120	0	0	NA	6qF2	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr7	25272796	25272796	A	G	ENSMUST00000169266.7	1	ENSMUSG00000005442	missense	I/V	651	Cic	ENSMUST00000169266.7:c.1951A>G	ENSMUSP00000132351.1:p.Ile651Val	H-2-Db	10	2	10	FSPINASPVV	FSPINASPVI	NetMHC	14.9	8.41	0.564	36	0.278	465.206	229.143	0.493	8.41	14.9	34.4	92.4	423.8869047	838.0115415	542.8376978	1013.141255	M7_p20	1.257142857	1.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.291	36	0	0	NA	7qA3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr7	5410476	5410476	T	C	ENSMUST00000108569.3	1	ENSMUSG00000078808	missense	I/V	252	Vmn1r58	ENSMUST00000108569.3:c.754A>G	ENSMUSP00000104209.2:p.Ile252Val	H-2-Kb	8	11	1	VSFVESRL	ISFVESRL	SMMPMBEC	11.634	11.343	0.975	183	0.257	14.49	14.995	1.035	14.39	13.68	15.6	15.3	17.32766328	16.24575876	11.3433152	11.63429308	M7_p20	0.171428571	0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.263	183	0	0	NA	7qA1	chr7-3489139-7214089	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr6	133036200	133036200	C	A	ENSMUST00000032317.3	NA	ENSMUSG00000030196	missense	R/M	301	Tas2r103	ENSMUST00000032317.3:c.902G>T	ENSMUSP00000032317.3:p.Arg301Met	H-2-Kb	8	10	2	LMYKYKHI	LRYKYKHI	NetMHC	22.46	837.26	37.278	49	0.265	81.621	874.363	10.713	837.26	22.46	1435.1	32.1	911.4650073	193.5263029	610.5763804	131.1414557	M7_p20	-1.028571429	-1.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.285	49	0	0	NA	6qG1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr6	142089812	142089812	A	C	ENSMUST00000111827.3	1	ENSMUSG00000079262	missense	S/R	595	Slco1a6	ENSMUST00000111827.3:c.1785T>G	ENSMUSP00000107458.3:p.Ser595Arg	H-2-Kb	8	11	1	RSFRRLYL	SSFRRLYL	NetMHCpan	28.9	12.6	0.436	182	0.137	60.546	28.672	0.474	11.45	32.43	12.6	28.9	45.57639811	96.10367602	44.74453509	88.66250554	M7_p20	-0.1	-0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.149	182	0	0	NA	6qG2	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.696217414	sgMsh2	cell line
chr7	18681013	18681013	A	G	ENSMUST00000076677.3	5	ENSMUSG00000063305	missense	I/T	319	Psg20	ENSMUST00000076677.3:c.956T>C	ENSMUSP00000075973.3:p.Ile319Thr	H-2-Kb	8	5	7	STPYFRTV	STPYFRIV	NetMHC	39.77	154.5	3.885	506	0.292	151.333	360.148	2.38	154.5	39.77	249.6	97.2	470.6954498	205.466016	680.361923	260.4593785	M7_p20	-0.257142857	-0.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.286	506	0	0	NA	7qA3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr7	26808945	26808945	T	A	ENSMUST00000040944.8	1	ENSMUSG00000049685	missense	F/I	7	Cyp2g1	ENSMUST00000040944.8:c.19T>A	ENSMUSP00000047150.7:p.Phe7Ile	H-2-Kb	8	6	2	AISIFMAL	AFSIFMAL	NetMHC	64.57	256.83	3.978	99	0.192	113.748	211.421	1.859	256.83	64.57	206.7	116.9	155.5034397	110.5961477	216.1424152	140.8445349	M7_p20	2.642857143	2.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.195	99	0	0	NA	7qA3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	0.911157018	sgMsh2	cell line
chr7	10447657	10447657	T	C	ENSMUST00000055964.7	NA	ENSMUSG00000046716	missense	F/L	283	Vmn1r67	ENSMUST00000055964.7:c.847T>C	ENSMUSP00000060746.4:p.Phe283Leu	H-2-Kb	8	4	8	CFPSFGPL	CFPSFGPF	NetMHC	77.53	1043.11	13.454	240	0.212	99.403	1165.294	11.723	1043.11	77.53	884.7	250.5	1287.478543	79.2027024	1502.242346	119.6024291	M7_p20	0.714285714	0.714285714	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.224	240	0	0	NA	7qA1	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr6	149044772	149044772	A	G	ENSMUST00000111557.7	5	ENSMUSG00000030313	missense	L/P	447	Dennd5b	ENSMUST00000111557.7:c.1340T>C	ENSMUSP00000107182.1:p.Leu447Pro	H-2-Kb	8	5	7	SVSVYEPL	SVSVYELL	NetMHC	78.51	330.01	4.203	90	0.2	157.92	448.607	2.841	330.01	78.51	276.9	109.9	576.4212727	217.6406428	567.204934	205.9396641	M7_p20	0.714285714	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.203	90	0	0	NA	6qG3	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	sgMsh2	cell line
chr6	124039164	124039164	A	C	ENSMUST00000032238.4	1	ENSMUSG00000096630	missense	M/L	196	Vmn2r26	ENSMUST00000032238.4:c.586A>C	ENSMUSP00000032238.3:p.Met196Leu	H-2-Kb	8	9	3	FSLHTAAL	FSMHTAAL	SMMPMBEC	137.956	181.861	1.318	496	0.218	181.639	226.185	1.245	236.87	213.4	215.5	305.7	257.4779247	149.8787285	181.861178	137.9558114	M7_p20	0.928571429	0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.223	496	0	0	NA	6qF2	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr7	5031599	5031599	T	C	ENSMUST00000076251.6	1	ENSMUSG00000074405	missense	L/P	861	Zfp865	ENSMUST00000076251.6:c.2582T>C	ENSMUSP00000075601.4:p.Leu861Pro	H-2-Kb	8	5	7	RFWEAAPL	RFWEAALL	SMM	128.748	340.989	2.649	12	0.333	206.406	473.858	2.296	783.56	274.22	566	396.5	340.9887101	128.7478543	381.7156799	138.5925865	M7_p20	0.6	0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.384	12	0	0	NA	7qA1	chr7-3489139-7214089	4	2	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr6	124702305	124702305	A	G	ENSMUST00000004381.13	1	ENSMUSG00000004270	missense	T/A	286	Lpcat3	ENSMUST00000004381.13:c.856A>G	ENSMUSP00000004381.7:p.Thr286Ala	H-2-Kb	8	5	7	VLYKYVAC	VLYKYVTC	SMM	109.079	181.443	1.663	230	0.183	207.544	193.816	0.934	537.41	308.5	197.2	294.1	181.4429089	109.0787117	190.4320313	120.9873599	M7_p20	0.828571429	1.071428571	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.19	230	0	0	NA	6qF2	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.887794018	sgMsh2	cell line
chr7	5075496	5075496	T	C	ENSMUST00000209099.1	1	ENSMUSG00000030435	missense	L/P	358	U2af2	ENSMUST00000209099.1:c.1073T>C	ENSMUSP00000147013.1:p.Leu358Pro	H-2-Kb	8	9	3	VTPQVPGL	VTLQVPGL	SMM	233.744	99.71	0.427	73	0.247	357.713	130.504	0.365	134.9	391.28	180.8	683.6	99.71029474	233.7437461	126.107234	324.1455024	M7_p20	0.028571429	0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	73	0	0	NA	7qA1	chr7-3489139-7214089	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr6	142089812	142089812	A	C	ENSMUST00000111827.3	1	ENSMUSG00000079262	missense	S/R	595	Slco1a6	ENSMUST00000111827.3:c.1785T>G	ENSMUSP00000107458.3:p.Ser595Arg	H-2-Kb	8	9	3	EVRSFRRL	EVSSFRRL	SMMPMBEC	253.945	816.094	3.214	182	0.137	483.92	1527.593	3.157	2801.92	662.53	1974.4	1653.8	1080.786721	305.3092764	816.0936526	253.9451951	M7_p20	-0.5	-0.5	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.149	182	0	0	NA	6qG2	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.696217414	sgMsh2	cell line
chr7	23541176	23541176	A	G	ENSMUST00000098704.2	NA	ENSMUSG00000074291	missense	I/V	153	Vmn1r168	ENSMUST00000098704.2:c.457A>G	ENSMUSP00000096301.2:p.Ile153Val	H-2-Kb	9	5	7	ILYNVYVPM	ILYNVYIPM	NetMHCpan	31.9	38.5	1.207	458	0.164	84.52	90.886	1.075	75.05	72.38	38.5	31.9	136.8075294	139.6722084	106.721028	96.66071427	M7_p20	0.371428571	1.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.152	458	0	0	NA	7qA3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	0.710235214	sgMsh2	cell line
chr6	124837668	124837668	T	A	ENSMUST00000024206.5	1	ENSMUSG00000023439	missense	K/M	89	Gnb3	ENSMUST00000024206.5:c.266A>T	ENSMUSP00000024206.5:p.Lys89Met	H-2-Kb	9	9	3	TNMVHAIPL	TNKVHAIPL	NetMHCpan	46.3	608.2	13.136	200	0.185	121.892	535.882	4.396	791.79	85.62	608.2	46.3	463.5643185	158.1648595	425.8434778	178.7516256	M7_p20	1.628571429	1.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.203	200	0	0	NA	6qF2	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.948537819	sgMsh2	cell line
chr7	5410476	5410476	T	C	ENSMUST00000108569.3	1	ENSMUSG00000078808	missense	I/V	252	Vmn1r58	ENSMUST00000108569.3:c.754A>G	ENSMUSP00000104209.2:p.Ile252Val	H-2-Kb	9	5	7	ITILFHVSF	ITILFHISF	NetMHC	88.07	93.98	1.067	183	0.257	134.087	152.688	1.139	93.98	88.07	188.8	133.2	156.3543614	159.628341	149.021867	134.9739632	M7_p20	2.014285714	2.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.263	183	0	0	NA	7qA1	chr7-3489139-7214089	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr7	10447657	10447657	T	C	ENSMUST00000055964.7	NA	ENSMUSG00000046716	missense	F/L	283	Vmn1r67	ENSMUST00000055964.7:c.847T>C	ENSMUSP00000060746.4:p.Phe283Leu	H-2-Kb	9	3	9	LCFPSFGPL	LCFPSFGPF	NetMHCpan	115.1	262.7	2.282	240	0.212	225.044	501.051	2.226	746.08	228.14	262.7	115.1	618.1729539	366.5303993	383.9281887	221.9473684	M7_p20	0.714285714	1.3	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.224	240	0	0	NA	7qA1	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr6	124837668	124837668	T	A	ENSMUST00000024206.5	1	ENSMUSG00000023439	missense	K/M	89	Gnb3	ENSMUST00000024206.5:c.266A>T	ENSMUSP00000024206.5:p.Lys89Met	H-2-Kb	9	3	9	VWDTYTTNM	VWDTYTTNK	SMM	229.145	3163.079	13.804	200	0.185	308.787	7373.407	23.879	11332.92	314.01	17062.3	1071.2	3163.078717	229.1447967	3413.893746	303.5638135	M7_p20	-1.214285714	-0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.203	200	0	0	NA	6qF2	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.948537819	sgMsh2	cell line
chr7	25307111	25307111	T	C	ENSMUST00000108409.1	2	ENSMUSG00000043843	missense	F/S	48	Tmem145	ENSMUST00000108409.1:c.143T>C	ENSMUSP00000104046.1:p.Phe48Ser	H-2-Kb	9	6	6	VFLTRSCFL	VFLTRFCFL	SMM	262.488	92.068	0.351	189	0.243	329.079	87.828	0.267	80.84	346.09	87.5	440.4	92.06827368	262.4883301	88.15561915	312.0685478	M7_p20	0.985714286	1.042857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.24	189	0	0	NA	7qA3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr6	134484391	134484391	T	G	ENSMUST00000032322.14	1	ENSMUSG00000030201	missense	E/A	701	Lrp6	ENSMUST00000032322.14:c.2102A>C	ENSMUSP00000032322.8:p.Glu701Ala	H-2-Kb	9	4	8	SALEHVVAF	SALEHVVEF	NetMHC	346.5	552.55	1.595	171	0.152	444.167	549.223	1.237	552.55	346.5	572.2	399.4	545.8961105	515.3591605	539.8212792	488.9337312	M7_p20	1.442857143	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.156	171	0	0	NA	6qG1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.728925614	sgMsh2	cell line
chr7	25761460	25761460	T	C	ENSMUST00000002677.10	1	ENSMUSG00000002602	missense	K/R	708	Axl	ENSMUST00000002677.10:c.2123A>G	ENSMUSP00000002677.4:p.Lys708Arg	H-2-Kb	9	7	5	KMPVRWIAI	KMPVKWIAI	NetMHC	351.78	378.59	1.076	134	0.231	387.454	595.076	1.536	378.59	351.78	864.2	468.7	539.6472894	360.6699835	650.5040428	414.2380608	M7_p20	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.238	134	0	0	NA	7qA3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr7	10100105	10100105	A	C	ENSMUST00000094863.5	5	ENSMUSG00000058685	missense	N/K	335	Vmn2r51	ENSMUST00000094863.5:c.1005T>G	ENSMUSP00000092459.4:p.Asn335Lys	H-2-Kb	9	7	5	SGFKKFVQT	SGFKNFVQT	NetMHCpan	246.4	610.6	2.478	401	0.077	341.905	660.005	1.93	709.41	399.2	610.6	246.4	991.0829389	500.1612019	593.2667381	284.6098982	M7_p20	-0.314285714	0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.078	401	0	0	NA	7qA1	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	0.364462807	sgMsh2	cell line
chr6	127146068	127146068	G	T	ENSMUST00000000188.11	1	ENSMUSG00000000184	missense	L/M	175	Ccnd2	ENSMUST00000000188.11:c.523C>A	ENSMUSP00000000188.8:p.Leu175Met	H-2-Kb	9	10	2	SMIRKHAQT	SLIRKHAQT	SMMPMBEC	369.19	2209.276	5.984	103	0.369	493.24	4167.215	8.449	4047.86	425.29	6721.4	2796.9	4286.570788	561.1900987	2209.276129	369.1900603	M7_p20	-1.357142857	-0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.369	103	0	0	NA	6qF3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr7	26808945	26808945	T	A	ENSMUST00000040944.8	1	ENSMUSG00000049685	missense	F/I	7	Cyp2g1	ENSMUST00000040944.8:c.19T>A	ENSMUSP00000047150.7:p.Phe7Ile	H-2-Kb	9	7	1	ISIFMALCL	FSIFMALCL	NetMHCpan	310.3	2008.2	6.472	99	0.192	371.317	1403.198	3.779	2392.05	875.31	2008.2	310.3	798.1968324	397.2921646	774.9077422	345.3424772	M7_p20	3.014285714	3.014285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.195	99	0	0	NA	7qA3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	0.911157018	sgMsh2	cell line
chr7	86488673	86488673	T	C	ENSMUST00000217110.1	5	ENSMUSG00000062878	missense	S/G	293	Olfr298	ENSMUST00000217110.1:c.877A>G	ENSMUSP00000150228.1:p.Ser293Gly	H-2-Db	9	6	6	YSLRNGDVK	YSLRNSDVK	SMMPMBEC	155.443	160.905	1.035	218	0.248	236.8	279.325	1.18	384.22	301.96	2214.7	2374.5	174.4295257	171.6405905	160.9051705	155.4425814	M7_p20	-1.114285714	-0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.243	218	0	0	NA	7qD3	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr7	44461349	44461349	A	G	ENSMUST00000058667.14	1	ENSMUSG00000047085	missense	N/S	215	Lrrc4b	ENSMUST00000058667.14:c.644A>G	ENSMUSP00000053123.8:p.Asn215Ser	H-2-Kb	8	5	7	VNLRYLSL	VNLRYLNL	NetMHC	4.8	2.81	0.585	55	0.127	7.395	4.044	0.547	2.81	4.8	4.1	5	3.987860888	9.789037676	5.257024488	12.01544888	M7_p20	0.185714286	0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.139	55	0	0	NA	7qB3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	0.649491413	sgMsh2	cell line
chr7	86695231	86695231	TA	T	ENSMUST00000080165.4	2	ENSMUSG00000060688	FS	L/X	258	Olfr292	ENSMUST00000080165.4:c.777del	ENSMUSP00000079060.3:p.Lys259AsnfsTer8	H-2-Kb	8	6	7	GAYVYLNL	GAYVYLKP	NetMHC	6.75	12486.07	1849.788	216	0.199	12.305	3750.636	304.809	12486.07	6.75	5427.6	8.1	2073.671696	21.2686537	1488.469706	16.50973111	M7_p20	1.071428571	1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.193	216	0	0	NA	7qD3	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	0.901811818	sgMsh2	cell line
chr7	29225257	29225257	A	G	ENSMUST00000085818.5	1	ENSMUSG00000046410	missense	Y/H	241	Kcnk6	ENSMUST00000085818.5:c.721T>C	ENSMUSP00000082975.4:p.Tyr241His	H-2-Kb	8	9	3	TAHLFLGL	TAYLFLGL	NetMHCpan	18.5	3.7	0.2	80	0.212	49.985	5.299	0.106	3.02	26.9	3.7	18.5	6.898267002	81.23440428	7.173646964	73.07015019	M7_p20	1.771428571	1.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.207	80	0	0	NA	7qB1	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	0.967228219	sgMsh2	cell line
chr7	46259908	46259908	T	C	ENSMUST00000164538.1	5	ENSMUSG00000009487	missense	S/P	601	Otog	ENSMUST00000164538.1:c.1801T>C	ENSMUSP00000130949.1:p.Ser601Pro	H-2-Kb	8	9	3	LSPVFLRV	LSSVFLRV	NetMHC	38.96	344.21	8.835	122	0.23	104.525	331.586	3.172	344.21	38.96	293.5	77	380.8377582	142.1477533	318.9627742	132.0504848	M7_p20	1.157142857	1.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.23	122	0	0	NA	7qB3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr7	27240043	27240043	A	G	ENSMUST00000108378.9	1	ENSMUSG00000003762	missense	N/S	166	Coq8b	ENSMUST00000108378.9:c.497A>G	ENSMUSP00000104015.3:p.Asn166Ser	H-2-Kb	8	11	1	SSFISPQL	NSFISPQL	NetMHCpan	37.1	365.8	9.86	132	0.167	46.041	356.964	7.753	1095.41	41.18	365.8	37.1	323.3999884	50.90260401	348.1288376	61.33946729	M7_p20	0.628571429	0.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.181	132	0	0	NA	7qA3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	0.845740617	sgMsh2	cell line
chr7	29096187	29096187	A	G	ENSMUST00000179893.8	5	ENSMUSG00000030592	missense	F/L	1093	Ryr1	ENSMUST00000179893.8:c.3277T>C	ENSMUSP00000137123.1:p.Phe1093Leu	H-2-Kb	8	4	8	SGRWYFEL	SGRWYFEF	NetMHC	44.53	936.27	21.026	67	0.388	78.42	1301.26	16.593	936.27	44.53	351.7	54.1	1670.090478	102.7401038	1666.249377	132.6600022	M7_p20	-0.571428571	-0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe	3	0.396	67	0	0	NA	7qB1	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr7	51574860	51574860	AT	A	ENSMUST00000043944.5	1	ENSMUSG00000055489	FS	N/X	521	Ano5	ENSMUST00000043944.5:c.1570del	ENSMUSP00000046884.5:p.Tyr524MetfsTer26	H-2-Kb	8	31	0	RSMRAASL	NA	NetMHC	52.59	NA	NA	161	0.255	128.744	NA	NA	NA	52.59	NA	135.1	NA	150.2242346	NA	122.3883275	M7_p20	0.457142857	0.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2547	161	0	0	NA	7qB4	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr7	29061567	29061567	T	G	ENSMUST00000179893.8	5	ENSMUSG00000030592	missense	E/A	3210	Ryr1	ENSMUST00000179893.8:c.9629A>C	ENSMUSP00000137123.1:p.Glu3210Ala	H-2-Kb	8	5	7	VAFLEPAL	VAFLEPEL	SMMPMBEC	62.336	172.878	2.773	39	0.154	71.002	166.794	2.349	160.71	73.81	135.6	77.4	202.1808416	68.19303192	172.8781076	62.33615346	M7_p20	1.271428571	1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.221	39	0	0	NA	7qB1	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr7	84946322	84946322	G	A	ENSMUST00000044583.9	5	ENSMUSG00000066372	missense	P/S	385	Vmn2r65	ENSMUST00000044583.9:c.1153C>T	ENSMUSP00000036551.8:p.Pro385Ser	H-2-Kb	8	11	1	SSYNLYNA	PSYNLYNA	NetMHC	74.08	8472.1	114.364	332	0.051	121.17	4161.282	34.343	8472.1	74.08	5735.9	111.5	2289.496585	130.8398387	2586.663888	149.8787285	M7_p20	-0.685714286	-0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.053	332	0	0	NA	7qD3	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	0.247647805	sgMsh2	cell line
chr7	84594768	84594768	G	A	ENSMUST00000032865.16	1	ENSMUSG00000030630	missense	P/L	261	Fah	ENSMUST00000032865.16:c.782C>T	ENSMUSP00000032865.8:p.Pro261Leu	H-2-Kb	8	9	3	ISLWVVPM	ISPWVVPM	NetMHCpan	73.4	102.4	1.395	157	0.191	108.95	217.441	1.996	121.74	84.32	102.4	73.4	313.1410475	133.5795574	370.458872	144.1252256	M7_p20	1.542857143	1.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.175	157	0	0	NA	7qD3	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	0.817705016	sgMsh2	cell line
chr7	45711648	45711648	G	A	ENSMUST00000107737.10	1	ENSMUSG00000057342	missense	H/Y	311	Sphk2	ENSMUST00000107737.10:c.931C>T	ENSMUSP00000103366.2:p.His311Tyr	H-2-Kb	8	11	1	YSERFRAL	HSERFRAL	SMMPMBEC	51.849	100.401	1.936	104	0.25	78.81	329.414	4.18	504.04	91.59	1440.2	246.2	154.7889663	66.02980276	100.4014535	51.84895408	M7_p20	-0.7	-0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.262	104	0	0	NA	7qB3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr7	81025277	81025277	T	C	ENSMUST00000107353.2	1	ENSMUSG00000005621	missense	V/A	663	Zfp592	ENSMUST00000107353.2:c.1988T>C	ENSMUSP00000102976.2:p.Val663Ala	H-2-Kb	8	8	4	QMFAAAPV	QMFVAAPV	NetMHC	110.41	85.67	0.776	76	0.118	282.53	241.996	0.857	85.67	110.41	243.7	314.6	240.2923806	250.4609364	304.6070846	358.7071224	M7_p20	1.814285714	1.814285714	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.17	76	0	0	NA	7qD3	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	0.794342016	sgMsh2	cell line
chr7	29225257	29225257	A	G	ENSMUST00000085818.5	1	ENSMUSG00000046410	missense	Y/H	241	Kcnk6	ENSMUST00000085818.5:c.721T>C	ENSMUSP00000082975.4:p.Tyr241His	H-2-Kb	8	5	7	KVLVTAHL	KVLVTAYL	NetMHC	175.61	259.86	1.48	80	0.212	245.282	288.63	1.177	259.86	175.61	317.4	242.4	323.3999884	338.6413603	255.1173529	248.1646968	M7_p20	1.985714286	1.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.207	80	0	0	NA	7qB1	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	0.967228219	sgMsh2	cell line
chr7	83618603	83618603	CA	C	ENSMUST00000039317.13	1	ENSMUSG00000038540	FS	S/X	758	Tmc3	ENSMUST00000039317.13:c.2276del	ENSMUSP00000046028.7:p.Lys759SerfsTer20	H-2-Kb	8	11	2	SSQRLSKL	NA	SMM	221.177	NA	NA	42	0.357	245.789	NA	NA	NA	236.46	NA	774.2	NA	221.1770188	NA	255.1173529	M7_p20	-0.842857143	-0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.345	42	0	0	NA	7qD3	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr7	44461349	44461349	A	G	ENSMUST00000058667.14	1	ENSMUSG00000047085	missense	N/S	215	Lrrc4b	ENSMUST00000058667.14:c.644A>G	ENSMUSP00000053123.8:p.Asn215Ser	H-2-Kb	8	10	2	LSLGMCNL	LNLGMCNL	SMMPMBEC	245.324	511.376	2.084	55	0.127	267.625	504.938	1.887	721	280.72	498.5	373.4	470.6954498	254.5305993	511.3755976	245.323979	M7_p20	1.042857143	1.042857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.139	55	0	0	NA	7qB3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	0.649491413	sgMsh2	cell line
chr7	30057402	30057402	A	G	ENSMUST00000080834.14	5	ENSMUSG00000098022	missense	L/P	115	Zfp82	ENSMUST00000080834.14:c.344T>C	ENSMUSP00000079647.7:p.Leu115Pro	H-2-Kb	8	5	7	SGLKSLPL	SGLKSLLL	NetMHC	384.78	1345.27	3.496	42	0.286	478.592	1371.785	2.866	1345.27	384.78	1398.3	687.5	1139.567356	430.2689433	1451.242539	526.9143181	M7_p20	0.671428571	0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.303	42	0	0	NA	7qB1	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr7	55979873	55979873	A	G	ENSMUST00000052204.5	1	ENSMUSG00000047037	missense	L/P	164	Nipa1	ENSMUST00000052204.5:c.491T>C	ENSMUSP00000053871.5:p.Leu164Pro	H-2-Kb	8	8	4	IVLPMLLL	IVLLMLLL	NetMHCpan	194	302.9	1.561	47	0.149	389.679	217.781	0.559	244.69	427.5	302.9	194	190.8710225	363.6972355	181.0256018	415.6616909	M7_p20	2.814285714	2.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.189	47	0	0	NA	7qB5	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	0.883121418	sgMsh2	cell line
chr7	48168688	48168688	A	G	ENSMUST00000094389.3	NA	ENSMUSG00000070551	missense	F/L	100	Mrgprb5	ENSMUST00000094389.3:c.298T>C	ENSMUSP00000091953.2:p.Phe100Leu	H-2-Kb	8	4	8	LNRRHTFL	LNRRHTFF	SMM	225.808	3670.625	16.255	177	0.288	394.898	3620.607	9.168	7069.17	505.52	2304.4	533.1	3670.624846	225.8083514	3570.590129	284.2758718	M7_p20	-1.4	-1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.291	177	0	0	NA	7qB4	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr7	30790603	30790603	C	A	ENSMUST00000098559.2	1	ENSMUSG00000074199	missense	D/E	86	Krtdap	ENSMUST00000098559.2:c.258C>A	ENSMUSP00000096159.1:p.Asp86Glu	H-2-Kb	8	8	4	INWEFFPK	INWDFFPK	SMMPMBEC	52.329	79.752	1.524	79	0.354	434.482	743.11	1.71	1929.16	1125.95	1368.8	793.5	117.4194387	75.46403103	79.75170931	52.32870654	M7_p20	-1.114285714	0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.321	79	0	0	NA	7qB1	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr7	84946322	84946322	G	A	ENSMUST00000044583.9	5	ENSMUSG00000066372	missense	P/S	385	Vmn2r65	ENSMUST00000044583.9:c.1153C>T	ENSMUSP00000036551.8:p.Pro385Ser	H-2-Kb	9	11	1	SSYNLYNAV	PSYNLYNAV	NetMHC	5.7	182.17	31.96	332	0.051	28.637	156.431	5.463	182.17	5.7	529.1	12.8	107.67379	44.47438999	130.6922997	51.19764681	M7_p20	0.028571429	0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.053	332	0	0	NA	7qD3	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	0.247647805	sgMsh2	cell line
chr7	30790603	30790603	C	A	ENSMUST00000098559.2	1	ENSMUSG00000074199	missense	D/E	86	Krtdap	ENSMUST00000098559.2:c.258C>A	ENSMUSP00000096159.1:p.Asp86Glu	H-2-Kb	9	8	4	INWEFFPKV	INWDFFPKV	NetMHC	15.02	19.47	1.296	79	0.354	35.114	40.848	1.163	19.47	15.02	28.7	19.5	67.78131653	61.53327071	52.99684305	50.72826396	M7_p20	-0.014285714	0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.321	79	0	0	NA	7qB1	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr7	30909069	30909069	T	C	ENSMUST00000187137.6	1	ENSMUSG00000036634	missense	T/A	207	Mag	ENSMUST00000187137.6:c.619A>G	ENSMUSP00000139564.1:p.Thr207Ala	H-2-Kb	9	3	9	VSLLHFVPA	VSLLHFVPT	NetMHC	56.32	83.41	1.481	52	0.25	88.094	81.249	0.922	83.41	56.32	110.8	75.9	79.08789199	122.7750162	65.20036095	100.2882377	M7_p20	1.657142857	2.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.281	52	0	0	NA	7qB1	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr7	51574860	51574860	AT	A	ENSMUST00000043944.5	1	ENSMUSG00000055489	FS	N/X	521	Ano5	ENSMUST00000043944.5:c.1570del	ENSMUSP00000046884.5:p.Tyr524MetfsTer26	H-2-Kb	9	13	2	FMRRYLPGL	NA	NetMHC	66.92	NA	NA	161	0.255	115.403	NA	NA	NA	66.92	NA	112.2	NA	118.6069123	NA	168.3642965	M7_p20	-0.671428571	-0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2547	161	0	0	NA	7qB4	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr7	51574860	51574860	AT	A	ENSMUST00000043944.5	1	ENSMUSG00000055489	FS	N/X	521	Ano5	ENSMUST00000043944.5:c.1570del	ENSMUSP00000046884.5:p.Tyr524MetfsTer26	H-2-Kb	9	10	5	LNFFMRRYL	NA	NetMHCpan	28.6	NA	NA	161	0.255	131.613	NA	NA	NA	84.12	NA	28.6	NA	179.1059444	NA	202.8850284	M7_p20	0.142857143	0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2547	161	0	0	NA	7qB4	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr7	29225257	29225257	A	G	ENSMUST00000085818.5	1	ENSMUSG00000046410	missense	Y/H	241	Kcnk6	ENSMUST00000085818.5:c.721T>C	ENSMUSP00000082975.4:p.Tyr241His	H-2-Kb	9	8	4	VTAHLFLGL	VTAYLFLGL	NetMHCpan	60.3	48	0.796	80	0.212	154.464	101.378	0.656	66.89	127.33	48	60.3	135.865753	181.5975563	170.7064772	203.3527266	M7_p20	1.771428571	1.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.207	80	0	0	NA	7qB1	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	0.967228219	sgMsh2	cell line
chr7	86695231	86695231	TA	T	ENSMUST00000080165.4	2	ENSMUSG00000060688	FS	L/X	258	Olfr292	ENSMUST00000080165.4:c.777del	ENSMUSP00000079060.3:p.Lys259AsnfsTer8	H-2-Kb	9	5	8	SGAYVYLNL	SGAYVYLKP	NetMHCpan	70.7	14371.7	203.277	216	0.199	383.983	10270.6	26.748	20568.75	128.07	14371.7	70.7	4467.967444	639.8968908	6169.500447	706.7242604	M7_p20	1.071428571	1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.193	216	0	0	NA	7qD3	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	0.901811818	sgMsh2	cell line
chr7	80082188	80082188	A	T	ENSMUST00000164056.8	1	ENSMUSG00000048897	missense	H/L	371	Zfp710	ENSMUST00000164056.8:c.1112A>T	ENSMUSP00000132361.2:p.His371Leu	H-2-Kb	9	6	6	SHLKRLMLL	SHLKRHMLL	NetMHC	135.38	88.46	0.653	50	0.22	224.071	227.686	1.016	88.46	135.38	187.3	204.3	272.9669078	243.8428356	268.0711022	278.7725451	M7_p20	1.242857143	1.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	50	0	0	NA	7qD2	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr7	29225257	29225257	A	G	ENSMUST00000085818.5	1	ENSMUSG00000046410	missense	Y/H	241	Kcnk6	ENSMUST00000085818.5:c.721T>C	ENSMUSP00000082975.4:p.Tyr241His	H-2-Kb	9	9	3	TAHLFLGLV	TAYLFLGLV	NetMHC	140.53	16.05	0.114	80	0.212	228.011	38.334	0.168	16.05	140.53	34	213.3	42.66875784	242.7224795	51.90987702	282.000579	M7_p20	2.114285714	2.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.207	80	0	0	NA	7qB1	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	0.967228219	sgMsh2	cell line
chr7	44461349	44461349	A	G	ENSMUST00000058667.14	1	ENSMUSG00000047085	missense	N/S	215	Lrrc4b	ENSMUST00000058667.14:c.644A>G	ENSMUSP00000053123.8:p.Asn215Ser	H-2-Kb	9	4	8	LVNLRYLSL	LVNLRYLNL	SMMPMBEC	129.196	114.881	0.889	55	0.127	148.556	115.141	0.775	62.08	155.17	115.4	218.4	121.9298389	141.9416992	114.8814742	129.1962773	M7_p20	0.185714286	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.139	55	0	0	NA	7qB3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	0.649491413	sgMsh2	cell line
chr7	29096187	29096187	A	G	ENSMUST00000179893.8	5	ENSMUSG00000030592	missense	F/L	1093	Ryr1	ENSMUST00000179893.8:c.3277T>C	ENSMUSP00000137123.1:p.Phe1093Leu	H-2-Kb	9	3	9	QSGRWYFEL	QSGRWYFEF	SMM	155.636	262.488	1.687	67	0.388	188.145	504.744	2.683	647.87	167.24	1424.6	323.7	262.4883301	155.6359783	361.6179668	209.0499173	M7_p20	-0.571428571	-0.571428571	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe	3	0.396	67	0	0	NA	7qB1	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr7	45711648	45711648	G	A	ENSMUST00000107737.10	1	ENSMUSG00000057342	missense	H/Y	311	Sphk2	ENSMUST00000107737.10:c.931C>T	ENSMUSP00000103366.2:p.His311Tyr	H-2-Kb	9	10	2	IYSERFRAL	IHSERFRAL	NetMHC	254.32	236.65	0.931	104	0.25	355.725	432.852	1.217	236.65	254.32	416.7	399.8	515.3591605	371.6293451	449.0037829	339.8208329	M7_p20	-0.7	-0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.262	104	0	0	NA	7qB3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr7	78450974	78450974	C	T	ENSMUST00000039431.13	1	ENSMUSG00000059146	missense	G/R	437	Ntrk3	ENSMUST00000039431.13:c.1309G>A	ENSMUSP00000037909.7:p.Gly437Arg	H-2-Kb	9	7	5	SIAVRLAAF	SIAVGLAAF	NetMHC	255.96	2125.95	8.306	155	0.194	303.312	1965.003	6.478	2125.95	255.96	2829.2	548.2	1393.509712	258.8868552	1804.05594	347.7362769	M7_p20	1.671428571	1.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.203	155	0	0	NA	7qD2	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	0.948537819	sgMsh2	cell line
chr7	45918149	45918149	A	G	ENSMUST00000164119.2	1	ENSMUSG00000040212	missense	Y/H	137	Emp3	ENSMUST00000164119.2:c.409T>C	ENSMUSP00000132519.1:p.Tyr137His	H-2-Kb	9	7	5	GSFGHCFAL	GSFGYCFAL	NetMHCpan	167.9	76.2	0.454	49	0.122	176.796	128.603	0.727	121.61	260.39	76.2	167.9	146.9298381	183.2778578	135.5969747	170.3138632	M7_p20	1.442857143	1.442857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.176	49	0	0	NA	7qB3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	0.822377616	sgMsh2	cell line
chr7	56984956	56984956	G	T	ENSMUST00000068911.12	1	ENSMUSG00000055026	missense	L/I	160	Gabrg3	ENSMUST00000068911.12:c.478C>A	ENSMUSP00000067632.6:p.Leu160Ile	H-2-Kb	9	10	2	IIYTLRLTI	ILYTLRLTI	NetMHCpan	87.7	221.9	2.53	55	0.164	300.528	1013.302	3.372	1082	274.28	221.9	87.7	1253.458616	367.3753391	944.6044779	326.7758854	M7_p20	0.7	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.171	55	0	0	NA	7qB5	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	0.799014616	sgMsh2	cell line
chr7	85871617	85871617	G	T	ENSMUST00000077478.7	5	ENSMUSG00000070458	missense	P/Q	381	Vmn2r73	ENSMUST00000077478.7:c.1142C>A	ENSMUSP00000076687.6:p.Pro381Gln	H-2-Kb	9	4	8	FRWLFMTQL	FRWLFMTPL	NetMHC	298.04	187.21	0.628	590	0.229	354.856	246.749	0.695	187.21	298.04	356.2	1019.4	242.1642333	391.8411118	251.3332806	317.8703353	M7_p20	1.028571429	1.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.226	590	0	0	NA	7qD3	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr7	55979873	55979873	A	G	ENSMUST00000052204.5	1	ENSMUSG00000047037	missense	L/P	164	Nipa1	ENSMUST00000052204.5:c.491T>C	ENSMUSP00000053871.5:p.Leu164Pro	H-2-Kb	9	8	4	IVLPMLLLL	IVLLMLLLL	SMM	204.696	121.649	0.594	47	0.149	235.633	198.63	0.843	238.68	304.54	1026.3	211.1	121.6494081	204.6963035	158.5805793	260.1656766	M7_p20	2.757142857	2.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.189	47	0	0	NA	7qB5	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	0.883121418	sgMsh2	cell line
chr7	80082188	80082188	A	T	ENSMUST00000164056.8	1	ENSMUSG00000048897	missense	H/L	371	Zfp710	ENSMUST00000164056.8:c.1112A>T	ENSMUSP00000132361.2:p.His371Leu	H-2-Kb	9	5	7	TSHLKRLML	TSHLKRHML	NetMHC	308.14	679.21	2.204	50	0.22	353.74	578.981	1.637	679.21	308.14	1396.6	945.4	478.7513372	370.7746213	450.0388435	336.7053368	M7_p20	0.242857143	0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	50	0	0	NA	7qD2	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr7	86335914	86335914	T	C	ENSMUST00000217494.1	5	ENSMUSG00000055610	missense	T/A	161	Olfr307	ENSMUST00000217494.1:c.481A>G	ENSMUSP00000149779.1:p.Thr161Ala	H-2-Kb	9	8	4	TAGAFSMPF	TAGTFSMPF	NetMHC	318.5	245	0.769	307	0.261	454.234	392.207	0.863	245	318.5	500.5	516	361.5014137	404.6783774	422.9119919	503.7905305	M7_p20	0.928571429	0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.246	307	0	0	NA	7qD3	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr7	84594768	84594768	G	A	ENSMUST00000032865.16	1	ENSMUSG00000030630	missense	P/L	261	Fah	ENSMUST00000032865.16:c.782C>T	ENSMUSP00000032865.8:p.Pro261Leu	H-2-Kb	9	3	9	KSFGTTISL	KSFGTTISP	NetMHC	354.9	15705.73	44.254	157	0.191	492.652	10118.657	20.539	15705.73	354.9	18480.4	530.2	2099.47158	455.1033161	4531.583638	615.5310989	M7_p20	1.214285714	1.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.175	157	0	0	NA	7qD3	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	0.817705016	sgMsh2	cell line
chr7	48643213	48643213	A	G	ENSMUST00000094383.2	NA	ENSMUSG00000070546	missense	F/L	197	Mrgprb3	ENSMUST00000094383.2:c.589T>C	ENSMUSP00000091945.1:p.Phe197Leu	H-2-Kb	9	3	9	VLFVVLCGL	VLFVVLCGF	NetMHC	404.45	968.82	2.395	134	0.187	451.067	942.784	2.09	968.82	404.45	1989	440.7	778.2336405	461.4344339	916.7480609	529.9684305	M7_p20	2.985714286	3.642857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.211	134	0	0	NA	7qB4	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	0.98591862	sgMsh2	cell line
chr7	48168688	48168688	A	G	ENSMUST00000094389.3	NA	ENSMUSG00000070551	missense	F/L	100	Mrgprb5	ENSMUST00000094389.3:c.298T>C	ENSMUSP00000091953.2:p.Phe100Leu	H-2-Kb	9	4	8	LNRRHTFLL	LNRRHTFFL	NetMHCpan	323.4	446.1	1.379	177	0.288	380.716	672.918	1.768	865.38	416.2	446.1	323.4	632.5720517	345.2311699	713.2634994	428.7952838	M7_p20	-0.357142857	-0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.291	177	0	0	NA	7qB4	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr7	84916249	84916249	T	C	ENSMUST00000214501.2	5	ENSMUSG00000070459	missense	F/L	157	Olfr290	ENSMUST00000214501.2:c.469T>C	ENSMUSP00000149411.1:p.Phe157Leu	H-2-Kb	9	3	9	WAAGFLNSL	WAAGFLNSF	SMM	331.979	559.899	1.687	415	0.301	437.998	879.699	2.008	1017.66	447.2	3470.9	803.5	559.8993973	331.9785319	741.7370966	428.7952838	M7_p20	1.071428571	1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.301	415	0	0	NA	7qD3	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr7	44905812	44905812	A	G	ENSMUST00000166972.8	1	ENSMUSG00000060279	missense	V/A	443	Ap2a1	ENSMUST00000166972.8:c.1328T>C	ENSMUSP00000127842.1:p.Val443Ala	H-2-Kb	9	5	7	VDYSWYADT	VDYSWYVDT	SMMPMBEC	136.852	185.46	1.355	194	0.201	430.402	1354.693	3.148	2462.72	689.76	3036.3	1824.5	246.6664026	171.044849	185.4598909	136.851638	M7_p20	-0.957142857	-0.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.19	194	0	0	NA	7qB3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	0.887794018	sgMsh2	cell line
chr7	106886682	106886682	A	G	ENSMUST00000213918.1	5	ENSMUSG00000109354	missense	L/P	45	Olfr706	ENSMUST00000213918.1:c.134T>C	ENSMUSP00000150075.1:p.Leu45Pro	H-2-Db	9	4	8	ALISNGLPL	ALISNGLLL	NetMHC	33.8	360.48	10.665	357	0.207	70.033	297.93	4.254	360.48	33.8	314.3	56	270.7821299	84.06592577	281.5593799	84.83401077	M7_p20	0.828571429	1.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.205	357	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	0.957883019	sgMsh2	cell line
chr7	106753278	106753278	A	T	ENSMUST00000216255.1	5	ENSMUSG00000059087	missense	L/I	37	Olfr698	ENSMUST00000216255.1:c.109T>A	ENSMUSP00000149305.1:p.Leu37Ile	H-2-Db	9	3	9	AAITALYFI	AAITALYFL	NetMHC	65.39	110.94	1.697	331	0.024	154.74	212.363	1.372	110.94	65.39	122.3	91.9	302.4266091	217.5805148	366.0749401	255.0175094	M7_p20	2.2	2.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.035	331	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	0.163541003	sgMsh2	cell line
chr7	108565457	108565457	A	G	ENSMUST00000075595.2	NA	ENSMUSG00000060105	missense	F/L	113	Olfr504	ENSMUST00000075595.2:c.337T>C	ENSMUSP00000075025.1:p.Phe113Leu	H-2-Db	9	6	6	YAIHCLVSM	YAIHCFVSM	NetMHC	93.71	107.99	1.152	357	0.266	321.339	304.71	0.948	107.99	93.71	252.5	306.5	430.1500721	391.3992598	356.9192732	336.1785503	M7_p20	1.842857143	1.842857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.281	357	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr7	119801262	119801262	A	G	ENSMUST00000033218.14	1	ENSMUSG00000030924	missense	N/S	90	Rexo5	ENSMUST00000033218.14:c.269A>G	ENSMUSP00000033218.8:p.Asn90Ser	H-2-Db	9	8	4	KQLSNVVVF	KQLNNVVVF	NetMHC	115.13	389.53	3.383	78	0.282	301.366	448.126	1.487	389.53	115.13	404.7	237.5	554.1406375	423.2724481	491.5526027	365.2329911	M7_p20	2.128571429	2.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.241	78	0	0	NA	7qF2	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr7	99470339	99470339	T	A	ENSMUST00000037359.8	1	ENSMUSG00000035298	missense	Y/N	344	Klhl35	ENSMUST00000037359.8:c.1030T>A	ENSMUSP00000041363.2:p.Tyr344Asn	H-2-Db	9	4	8	CALRNDINV	CALRNDIYV	NetMHC	166.63	13.92	0.084	36	0.222	190.229	34.668	0.182	13.92	166.63	20.4	189.2	48.9350459	191.2581717	63.91017401	246.3598891	M7_p20	-0.357142857	0.157142857	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.23	36	0	0	NA	7qE1	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr7	101833620	101833620	G	A	ENSMUST00000035836.13	1	ENSMUSG00000032737	missense	P/S	105	Inppl1	ENSMUST00000035836.13:c.313C>T	ENSMUSP00000048057.6:p.Pro105Ser	H-2-Db	9	8	4	YAQSNQGLV	YAQPNQGLV	NetMHC	182.42	1117.91	6.128	41	0.171	186.536	439.722	2.357	1117.91	182.42	390.8	189.6	448.3529174	197.5240583	431.0920362	183.4720865	M7_p20	-0.528571429	-0.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.213	41	0	0	NA	7qE2	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	0.99526382	sgMsh2	cell line
chr7	104618461	104618461	CT	C	ENSMUST00000098172.2	NA	ENSMUSG00000073924	FS	F/X	269	Olfr656	ENSMUST00000098172.2:c.809del	ENSMUSP00000095774.2:p.Phe270SerfsTer?	H-2-Db	9	11	2	FSHTALATM	NA	NetMHC	212.56	NA	NA	141	0.17	467.413	NA	NA	NA	212.56	NA	572.9	NA	361.9261808	NA	637.6318469	M7_p20	0.671428571	0.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.165	141	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	0.770979015	sgMsh2	cell line
chr7	105337497	105337497	A	G	ENSMUST00000213290.1	5	ENSMUSG00000043948	missense	I/T	73	Olfr691	ENSMUST00000213290.1:c.218T>C	ENSMUSP00000150297.1:p.Ile73Thr	H-2-Db	9	4	8	SMLAITDTL	SMLAITDIL	NetMHCpan	179	464.6	2.596	203	0.276	364.26	1326.091	3.641	1789.51	388.41	464.6	179	1136.632317	340.1104688	1515.549062	485.9258466	M7_p20	1.285714286	1.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.285	203	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr7	119801262	119801262	A	G	ENSMUST00000033218.14	1	ENSMUSG00000030924	missense	N/S	90	Rexo5	ENSMUST00000033218.14:c.269A>G	ENSMUSP00000033218.8:p.Asn90Ser	H-2-Db	10	8	4	KQLSNVVVFI	KQLNNVVVFI	NetMHC	57.06	174.67	3.061	78	0.282	411.754	445.149	1.081	174.67	57.06	313.2	174.5	577.0985724	649.007925	876.3346825	949.882748	M7_p20	2.228571429	2.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.241	78	0	0	NA	7qF2	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr7	102804243	102804243	T	C	ENSMUST00000061096.6	NA	ENSMUSG00000048469	missense	I/T	255	Olfr564	ENSMUST00000061096.6:c.764T>C	ENSMUSP00000129376.1:p.Ile255Thr	H-2-Kb	8	6	6	VAVFYTPL	VAVFYIPL	NetMHCpan	5.1	7.7	1.51	414	0.198	10.935	14.209	1.299	11.25	6.32	7.7	5.1	17.16880231	15.55034397	18.48161845	16.09681675	M7_p20	1.285714286	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.203	414	0	0	NA	7qE3	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	0.948537819	sgMsh2	cell line
chr7	104618461	104618461	CT	C	ENSMUST00000098172.2	NA	ENSMUSG00000073924	FS	F/X	269	Olfr656	ENSMUST00000098172.2:c.809del	ENSMUSP00000095774.2:p.Phe270SerfsTer?	H-2-Kb	8	9	4	FSFSHTAL	NA	NetMHC	11.91	NA	NA	141	0.17	15.796	NA	NA	NA	11.91	NA	16.5	NA	15.09176382	NA	18.1861178	M7_p20	0.414285714	0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.165	141	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	0.770979015	sgMsh2	cell line
chr7	104618461	104618461	CT	C	ENSMUST00000098172.2	NA	ENSMUSG00000073924	FS	F/X	269	Olfr656	ENSMUST00000098172.2:c.809del	ENSMUSP00000095774.2:p.Phe270SerfsTer?	H-2-Kb	8	22	0	STFIFFWL	NA	SMM	6.695	NA	NA	141	0.17	10.848	NA	NA	NA	14.01	NA	31.4	NA	6.694836882	NA	7.686701211	M7_p20	2.157142857	2.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.165	141	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	0.770979015	sgMsh2	cell line
chr7	106753278	106753278	A	T	ENSMUST00000216255.1	5	ENSMUSG00000059087	missense	L/I	37	Olfr698	ENSMUST00000216255.1:c.109T>A	ENSMUSP00000149305.1:p.Leu37Ile	H-2-Kb	8	6	6	TALYFIAL	TALYFLAL	NetMHC	16.95	20.14	1.188	331	0.024	27.941	32.649	1.169	20.14	16.95	14.8	17	45.15855118	38.88123042	49.85859086	42.43654321	M7_p20	2.457142857	2.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.035	331	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	0.163541003	sgMsh2	cell line
chr7	119801285	119801285	A	C	ENSMUST00000033218.14	1	ENSMUSG00000030924	missense	K/Q	98	Rexo5	ENSMUST00000033218.14:c.292A>C	ENSMUSP00000033218.8:p.Lys98Gln	H-2-Kb	8	6	6	VVFILQGM	VVFILKGM	NetMHCpan	32.8	53.9	1.643	84	0.286	108.167	169.285	1.565	113.28	47.78	53.9	32.8	250.4609364	168.5543635	225.2890066	188.2521739	M7_p20	1.9	2.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.285	84	0	0	NA	7qF2	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr7	126547648	126547648	C	A	ENSMUST00000032992.6	1	ENSMUSG00000030738	missense	R/M	787	Eif3c	ENSMUST00000032992.6:c.2360G>T	ENSMUSP00000032992.4:p.Arg787Met	H-2-Kb	8	11	1	MTYLFTYS	RTYLFTYS	SMM	24.196	48.055	1.986	93	0.247	65.285	108.333	1.659	188.53	94.7	148	107.2	48.05515695	24.19580078	68.66572344	35.87071224	M7_p20	0.257142857	0.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.265	93	0	0	NA	7qF3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr7	104618461	104618461	CT	C	ENSMUST00000098172.2	NA	ENSMUSG00000073924	FS	F/X	269	Olfr656	ENSMUST00000098172.2:c.809del	ENSMUSP00000095774.2:p.Phe270SerfsTer?	H-2-Kb	8	32	0	ICFSHRLL	NA	SMMPMBEC	70.104	NA	NA	141	0.17	84.633	NA	NA	NA	114.33	NA	80.4	NA	88.86689373	NA	70.10354824	M7_p20	0.628571429	0.728571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.165	141	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	0.770979015	sgMsh2	cell line
chr7	104618461	104618461	CT	C	ENSMUST00000098172.2	NA	ENSMUSG00000073924	FS	F/X	269	Olfr656	ENSMUST00000098172.2:c.809del	ENSMUSP00000095774.2:p.Phe270SerfsTer?	H-2-Kb	8	41	0	LWYMESRL	NA	NetMHC	157.77	NA	NA	141	0.17	268.725	NA	NA	NA	157.77	NA	301	NA	461.0414792	NA	236.4503711	M7_p20	-0.757142857	-0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.165	141	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	0.770979015	sgMsh2	cell line
chr7	143764865	143764865	A	G	ENSMUST00000058092.7	1	ENSMUSG00000050276	missense	V/A	170	Mrgprg	ENSMUST00000058092.7:c.509T>C	ENSMUSP00000060411.6:p.Val170Ala	H-2-Kb	8	5	7	SVTWLAAL	SVTWLAVL	NetMHC	159.87	1117.42	6.99	149	0.275	214.27	627.213	2.927	1117.42	159.87	483.5	188.8	564.598864	239.7397234	689.8267002	306.71852	M7_p20	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.281	149	0	0	NA	7qF5	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr7	128129629	128129629	A	G	ENSMUST00000033053.7	1	ENSMUSG00000030789	missense	T/A	4	Itgax	ENSMUST00000033053.7:c.10A>G	ENSMUSP00000033053.6:p.Thr4Ala	H-2-Kb	8	4	1	AWIAFLLL	TWIAFLLL	NetMHC	160.15	143.2	0.894	85	0.318	215.414	169.905	0.789	143.2	160.15	172.8	252.2	172.8781076	218.1423563	167.0090478	212.686537	M7_p20	2.8	2.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.32	85	0	0	NA	7qF3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr7	105555462	105555462	AC	A	ENSMUST00000046983.9	1	ENSMUSG00000037049	FS	P/X	183	Smpd1	ENSMUST00000046983.9:c.551del	ENSMUSP00000042187.8:p.Pro184GlnfsTer72	H-2-Kb	8	47	0	VQIHFAAA	NA	SMMPMBEC	150.918	NA	NA	78	0.359	175.233	NA	NA	NA	165.65	NA	488.7	NA	184.8161845	NA	150.9176382	M7_p20	0.857142857	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.357	78	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr7	104618461	104618461	CT	C	ENSMUST00000098172.2	NA	ENSMUSG00000073924	FS	F/X	269	Olfr656	ENSMUST00000098172.2:c.809del	ENSMUSP00000095774.2:p.Phe270SerfsTer?	H-2-Kb	8	25	0	IFFWLMSI	NA	SMM	147.482	NA	NA	141	0.17	172.225	NA	NA	NA	173.35	NA	171.1	NA	147.4823333	NA	174.4777291	M7_p20	2.014285714	2.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.165	141	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	0.770979015	sgMsh2	cell line
chr7	105555462	105555462	AC	A	ENSMUST00000046983.9	1	ENSMUSG00000037049	FS	P/X	183	Smpd1	ENSMUST00000046983.9:c.551del	ENSMUSP00000042187.8:p.Pro184GlnfsTer72	H-2-Kb	8	38	0	STWRAQTL	NA	NetMHCpan	140.5	NA	NA	78	0.359	249.349	NA	NA	NA	259.51	NA	140.5	NA	239.1883374	NA	262.2647967	M7_p20	-0.671428571	-0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.357	78	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr7	104129212	104129212	T	G	ENSMUST00000053743.5	NA	ENSMUSG00000055643	missense	D/A	135	Ubqln5	ENSMUST00000053743.5:c.404A>C	ENSMUSP00000062054.4:p.Asp135Ala	H-2-Kb	8	10	2	AAFFSQRV	ADFFSQRV	NetMHCpan	138.1	6760.2	48.951	31	0.29	418.572	5000.828	11.947	9640.55	282.85	6760.2	138.1	2646.91503	554.2937734	3241.455024	722.337231	M7_p20	0.4	0.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.261	31	0	0	NA	7qE3	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr7	106753278	106753278	A	T	ENSMUST00000216255.1	5	ENSMUSG00000059087	missense	L/I	37	Olfr698	ENSMUST00000216255.1:c.109T>A	ENSMUSP00000149305.1:p.Leu37Ile	H-2-Kb	8	11	1	IALTSNGL	LALTSNGL	SMM	299.047	1418.208	4.742	331	0.024	347.338	1815.52	5.227	2185.06	325.92	2058	431.7	1418.208226	299.0473787	1573.040847	368.7567681	M7_p20	0.571428571	0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.035	331	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	0.163541003	sgMsh2	cell line
chr7	141442988	141442988	A	T	ENSMUST00000026580.11	5	ENSMUSG00000025507	missense	L/H	97	Pidd1	ENSMUST00000026580.11:c.290T>A	ENSMUSP00000026580.5:p.Leu97His	H-2-Kb	8	7	5	SLLRHRSL	SLLRLRSL	SMM	211.709	469.613	2.218	29	0.241	277.12	461.12	1.664	729.3	328.95	329.8	360.2	469.6128803	211.7093311	452.6265239	225.2890066	M7_p20	-0.228571429	-0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.263	29	0	0	NA	7qF5	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr7	92624080	92624080	A	G	ENSMUST00000118157.7	1	ENSMUSG00000041343	missense	I/T	113	Ankrd42	ENSMUST00000118157.7:c.338T>C	ENSMUSP00000113767.1:p.Ile113Thr	H-2-Kb	8	10	2	LTINGANL	LIINGANL	SMMPMBEC	208.805	217.641	1.042	120	0.192	312.671	267.751	0.856	251.88	341.72	448	484.5	283.6220554	283.6220554	217.6406428	208.8045702	M7_p20	0.285714286	0.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.214	120	0	0	NA	7qE1	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	0.99993642	sgMsh2	cell line
chr7	107902860	107902860	T	G	ENSMUST00000216937.2	3	ENSMUSG00000073893	missense	L/V	48	Olfr472	ENSMUST00000216937.2:c.142T>G	ENSMUSP00000150404.2:p.Leu48Val	H-2-Kb	8	11	1	VIRISSQL	LIRISSQL	SMM	217.14	1098.348	5.058	473	0.237	318.27	1856.107	5.832	2507.9	346.98	2954.6	880.8	1098.348092	217.1400833	1204.314735	289.5609548	M7_p20	0.457142857	0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.238	473	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr7	139511443	139511443	TA	T	ENSMUST00000026550.13	1	ENSMUSG00000025477	FS	L/X	114	Inpp5a	ENSMUST00000026550.13:c.347del	ENSMUSP00000026550.7:p.Asn116ThrfsTer66	H-2-Kb	8	47	0	SSHRTTFL	NA	SMMPMBEC	279.731	NA	NA	109	0.174	346.663	NA	NA	NA	383.77	NA	829.5	NA	309.5565516	NA	279.7306149	M7_p20	-0.471428571	-0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.175	109	0	0	NA	7qF4	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	0.817705016	sgMsh2	cell line
chr7	102640431	102640431	T	C	ENSMUST00000214841.2	5	ENSMUSG00000073971	missense	Y/H	62	Olfr554	ENSMUST00000214841.2:c.184T>C	ENSMUSP00000150312.1:p.Tyr62His	H-2-Kb	8	10	2	MHFFLCML	MYFFLCML	SMM	148.505	239.188	1.611	157	0.293	175.216	257.858	1.472	379.78	401.79	221.3	160	239.1883374	148.504632	276.528565	190.4320313	M7_p20	2.057142857	2.057142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.297	157	0	0	NA	7qE3	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr7	133721362	133721362	T	C	ENSMUST00000033290.11	1	ENSMUSG00000030986	missense	N/D	708	Dhx32	ENSMUST00000033290.11:c.2122A>G	ENSMUSP00000033290.5:p.Asn708Asp	H-2-Kb	8	5	7	PQYYFSDL	PQYYFSNL	SMM	381.716	59.257	0.155	123	0.317	426.377	54.129	0.127	23.37	432.28	49	468.5	59.2570463	381.7156799	70.10354824	420.4748265	M7_p20	-0.542857143	-0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.329	123	0	0	NA	7qF3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr7	104618461	104618461	CT	C	ENSMUST00000098172.2	NA	ENSMUSG00000073924	FS	F/X	269	Olfr656	ENSMUST00000098172.2:c.809del	ENSMUSP00000095774.2:p.Phe270SerfsTer?	H-2-Kb	8	7	6	ALFSFSHT	ALFSFFTH	SMMPMBEC	267.756	1075.821	4.018	141	0.17	432.905	1977.3	4.568	2878.78	498.71	721.2	367.1	3554.184757	517.2970479	1075.820957	267.7564861	M7_p20	0.557142857	0.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.165	141	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	0.770979015	sgMsh2	cell line
chr7	100029349	100029349	A	C	ENSMUST00000107084.7	1	ENSMUSG00000030732	missense	K/T	376	Chrdl2	ENSMUST00000107084.7:c.1127A>C	ENSMUSP00000102699.1:p.Lys376Thr	H-2-Kb	8	10	2	VTGIYHLV	VKGIYHLV	SMMPMBEC	259.263	1488.47	5.741	62	0.242	418.532	4047.185	9.67	7154.5	645.35	6605.9	574.8	1437.937467	262.2647967	1488.469706	259.2626764	M7_p20	0.985714286	0.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.268	62	0	0	NA	7qE2	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr7	104635816	104635816	CA	C	ENSMUST00000215454.2	5	ENSMUSG00000073923	FS	T/X	47	Olfr657	ENSMUST00000215454.2:c.143del	ENSMUSP00000150070.1:p.Asn48ThrfsTer14	H-2-Kb	8	13	0	CSFSSSSV	NA	NetMHCpan	347.8	NA	NA	295	0.271	456.107	NA	NA	NA	759.7	NA	347.8	NA	373.0267702	NA	539.1877292	M7_p20	0.428571429	0.428571429	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.238	295	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr7	104618461	104618461	CT	C	ENSMUST00000098172.2	NA	ENSMUSG00000073924	FS	F/X	269	Olfr656	ENSMUST00000098172.2:c.809del	ENSMUSP00000095774.2:p.Phe270SerfsTer?	H-2-Kb	8	34	0	FSHRLLTL	NA	NetMHCpan	343.8	NA	NA	141	0.17	414.251	NA	NA	NA	776.34	NA	343.8	NA	418.5429201	NA	409.9585987	M7_p20	0.314285714	0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.165	141	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	0.770979015	sgMsh2	cell line
chr7	104618461	104618461	CT	C	ENSMUST00000098172.2	NA	ENSMUSG00000073924	FS	F/X	269	Olfr656	ENSMUST00000098172.2:c.809del	ENSMUSP00000095774.2:p.Phe270SerfsTer?	H-2-Kb	8	31	0	SICFSHRL	NA	NetMHCpan	294	NA	NA	141	0.17	411.787	NA	NA	NA	932.09	NA	294	NA	373.0267702	NA	450.5468939	M7_p20	0.728571429	0.728571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.165	141	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	0.770979015	sgMsh2	cell line
chr7	106677976	106677976	T	C	ENSMUST00000215541.1	5	ENSMUSG00000051680	missense	K/R	170	Olfr693	ENSMUST00000215541.1:c.509A>G	ENSMUSP00000150203.1:p.Lys170Arg	H-2-Kb	8	5	7	MQYPFCRS	MQYPFCKS	SMM	110.342	315.312	2.858	244	0.225	395.159	833.205	2.109	3782.69	1164.02	1129.7	594.1	315.3116375	110.3417837	536.7103866	196.218522	M7_p20	-0.914285714	-0.528571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.224	244	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr7	102804243	102804243	T	C	ENSMUST00000061096.6	NA	ENSMUSG00000048469	missense	I/T	255	Olfr564	ENSMUST00000061096.6:c.764T>C	ENSMUSP00000129376.1:p.Ile255Thr	H-2-Kb	9	5	7	AVAVFYTPL	AVAVFYIPL	NetMHC	9.55	22.58	2.364	414	0.198	25.078	36.449	1.453	22.58	9.55	31.2	10.7	41.69749833	39.45572246	59.19022625	53.85797247	M7_p20	1.285714286	1.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.203	414	0	0	NA	7qE3	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	0.948537819	sgMsh2	cell line
chr7	143764865	143764865	A	G	ENSMUST00000058092.7	1	ENSMUSG00000050276	missense	V/A	170	Mrgprg	ENSMUST00000058092.7:c.509T>C	ENSMUSP00000060411.6:p.Val170Ala	H-2-Kb	9	4	8	TSVTWLAAL	TSVTWLAVL	NetMHC	23.2	97.58	4.206	149	0.275	112.97	169.914	1.504	97.58	23.2	118.9	47.6	317.0370367	224.9624328	220.9276129	178.3405083	M7_p20	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.281	149	0	0	NA	7qF5	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr7	104618461	104618461	CT	C	ENSMUST00000098172.2	NA	ENSMUSG00000073924	FS	F/X	269	Olfr656	ENSMUST00000098172.2:c.809del	ENSMUSP00000095774.2:p.Phe270SerfsTer?	H-2-Kb	9	30	0	MSICFSHRL	NA	NetMHCpan	15.3	NA	NA	141	0.17	83.529	NA	NA	NA	24.79	NA	15.3	NA	142.2689086	NA	188.039895	M7_p20	0.728571429	0.985714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.165	141	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	0.770979015	sgMsh2	cell line
chr7	106753278	106753278	A	T	ENSMUST00000216255.1	5	ENSMUSG00000059087	missense	L/I	37	Olfr698	ENSMUST00000216255.1:c.109T>A	ENSMUSP00000149305.1:p.Leu37Ile	H-2-Kb	9	5	7	ITALYFIAL	ITALYFLAL	NetMHCpan	17.9	14.3	0.799	331	0.024	48.807	52.086	1.067	29.68	25.65	14.3	17.9	74.49206268	71.96312263	76.95733148	75.20556875	M7_p20	2.457142857	2.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.035	331	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	0.163541003	sgMsh2	cell line
chr7	103383210	103383210	C	A	ENSMUST00000218246.1	5	ENSMUSG00000059874	missense	R/M	264	Olfr603	ENSMUST00000218246.1:c.791G>T	ENSMUSP00000151321.1:p.Arg264Met	H-2-Kb	9	3	9	AFFSFMTHM	AFFSFMTHR	NetMHC	35.33	1084.45	30.695	250	0.144	58.802	1265.361	21.519	1084.45	35.33	5417.8	36.3	914.3448014	81.30364195	1446.272072	107.2136299	M7_p20	0.671428571	1.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.163	250	0	0	NA	7qE3	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	0.761633815	sgMsh2	cell line
chr7	104618461	104618461	CT	C	ENSMUST00000098172.2	NA	ENSMUSG00000073924	FS	F/X	269	Olfr656	ENSMUST00000098172.2:c.809del	ENSMUSP00000095774.2:p.Phe270SerfsTer?	H-2-Kb	9	22	0	STFIFFWLM	NA	SMM	35.409	NA	NA	141	0.17	47.397	NA	NA	NA	56.84	NA	81.9	NA	35.40870144	NA	37.95333991	M7_p20	2.528571429	2.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.165	141	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	0.770979015	sgMsh2	cell line
chr7	102804243	102804243	T	C	ENSMUST00000061096.6	NA	ENSMUSG00000048469	missense	I/T	255	Olfr564	ENSMUST00000061096.6:c.764T>C	ENSMUSP00000129376.1:p.Ile255Thr	H-2-Kb	9	8	4	VFYTPLISL	VFYIPLISL	NetMHC	89.79	84.86	0.945	414	0.198	100.968	103.132	1.021	84.86	89.79	198.8	102.6	85.13536455	99.3367621	121.129521	141.6609011	M7_p20	1.1	1.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.203	414	0	0	NA	7qE3	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	0.948537819	sgMsh2	cell line
chr7	141442988	141442988	A	T	ENSMUST00000026580.11	5	ENSMUSG00000025507	missense	L/H	97	Pidd1	ENSMUST00000026580.11:c.290T>A	ENSMUSP00000026580.5:p.Leu97His	H-2-Kb	9	6	6	WSLLRHRSL	WSLLRLRSL	NetMHC	100.69	132.06	1.312	29	0.241	282.077	293.949	1.042	132.06	100.69	315.5	287.3	299.9922256	335.8226621	287.9055255	276.8534884	M7_p20	-0.228571429	-0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.263	29	0	0	NA	7qF5	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr7	102804243	102804243	T	C	ENSMUST00000061096.6	NA	ENSMUSG00000048469	missense	I/T	255	Olfr564	ENSMUST00000061096.6:c.764T>C	ENSMUSP00000129376.1:p.Ile255Thr	H-2-Kb	9	6	6	VAVFYTPLI	VAVFYIPLI	NetMHCpan	95.1	97.3	1.023	414	0.198	190.906	181.259	0.949	176.63	183.61	97.3	95.1	196.3857628	198.2028979	185.8874201	201.9528563	M7_p20	1.671428571	1.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.203	414	0	0	NA	7qE3	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	0.948537819	sgMsh2	cell line
chr7	128129629	128129629	A	G	ENSMUST00000033053.7	1	ENSMUSG00000030789	missense	T/A	4	Itgax	ENSMUST00000033053.7:c.10A>G	ENSMUSP00000033053.6:p.Thr4Ala	H-2-Kb	9	4	1	AWIAFLLLL	TWIAFLLLL	SMM	88.127	74.836	0.849	85	0.318	167.236	138.946	0.831	159.52	185.45	256.4	410.7	74.83590241	88.12720572	118.3722765	149.021867	M7_p20	3.471428571	3.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.32	85	0	0	NA	7qF3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr7	128129629	128129629	A	G	ENSMUST00000033053.7	1	ENSMUSG00000030789	missense	T/A	4	Itgax	ENSMUST00000033053.7:c.10A>G	ENSMUSP00000033053.6:p.Thr4Ala	H-2-Kb	9	3	2	CAWIAFLLL	CTWIAFLLL	SMM	226.522	311.968	1.377	85	0.318	314.24	392.132	1.248	345.48	288.66	1065.6	854.3	311.967965	226.5217979	438.783209	339.8208329	M7_p20	2.8	2.8	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.32	85	0	0	NA	7qF3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr7	104618461	104618461	CT	C	ENSMUST00000098172.2	NA	ENSMUSG00000073924	FS	F/X	269	Olfr656	ENSMUST00000098172.2:c.809del	ENSMUSP00000095774.2:p.Phe270SerfsTer?	H-2-Kb	9	24	0	FIFFWLMSI	NA	SMM	238.292	NA	NA	141	0.17	269.137	NA	NA	NA	288.67	NA	790.8	NA	238.292295	NA	249.6031145	M7_p20	2.014285714	2.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.165	141	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	0.770979015	sgMsh2	cell line
chr7	104129212	104129212	T	G	ENSMUST00000053743.5	NA	ENSMUSG00000055643	missense	D/A	135	Ubqln5	ENSMUST00000053743.5:c.404A>C	ENSMUSP00000062054.4:p.Asp135Ala	H-2-Kb	9	9	3	LAAFFSQRV	LADFFSQRV	NetMHC	301.17	814.66	2.705	31	0.29	456.1	914.063	2.004	814.66	301.17	2680.4	469.5	843.5483883	442.7004873	984.5777112	609.8878759	M7_p20	0.4	1.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.261	31	0	0	NA	7qE3	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr7	108466294	108466294	C	A	ENSMUST00000217616.2	NA	ENSMUSG00000096679	missense	H/Q	323	Olfr498	ENSMUST00000217616.2:c.969C>A	ENSMUSP00000150971.1:p.His323Gln	H-2-Kb	9	13	2	TQYNHNYPV	THYNHNYPV	NetMHCpan	244.2	296.1	1.213	349	0.212	335.309	309.144	0.922	322.41	309	296.1	244.2	322.1884741	416.0159675	273.0549161	361.6179668	M7_p20	-1.457142857	-1.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.204	349	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	0.953210419	sgMsh2	cell line
chr7	104618461	104618461	CT	C	ENSMUST00000098172.2	NA	ENSMUSG00000073924	FS	F/X	269	Olfr656	ENSMUST00000098172.2:c.809del	ENSMUSP00000095774.2:p.Phe270SerfsTer?	H-2-Kb	9	9	4	FSFSHTALA	NA	NetMHC	310.3	NA	NA	141	0.17	368.373	NA	NA	NA	310.3	NA	336.7	NA	400.0460623	NA	473.4237051	M7_p20	0.785714286	0.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.165	141	0	0	NA	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	0.770979015	sgMsh2	cell line
chr7	98939933	98939933	C	A	ENSMUST00000037968.9	1	ENSMUSG00000035354	missense	Q/H	420	Uvrag	ENSMUST00000037968.9:c.1260G>T	ENSMUSP00000045297.8:p.Gln420His	H-2-Kb	9	10	2	LHFDYGVYL	LQFDYGVYL	NetMHCpan	152.4	140.2	0.92	127	0.244	314.867	356.381	1.132	319.89	333.08	140.2	152.4	514.1738673	398.2080176	392.8710251	296.6538575	M7_p20	0.614285714	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.256	127	0	0	NA	7qE1	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr7	104129212	104129212	T	G	ENSMUST00000053743.5	NA	ENSMUSG00000055643	missense	D/A	135	Ubqln5	ENSMUST00000053743.5:c.404A>C	ENSMUSP00000062054.4:p.Asp135Ala	H-2-Kb	9	11	1	AFFSQRVQL	DFFSQRVQL	NetMHC	340.85	1973.1	5.789	31	0.29	466.858	1824.504	3.908	1973.1	340.85	3384.1	498.6	1309.51356	464.6329446	1675.907328	469.0833305	M7_p20	-0.214285714	0.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.261	31	0	0	NA	7qE3	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr7	126547648	126547648	C	A	ENSMUST00000032992.6	1	ENSMUSG00000030738	missense	R/M	787	Eif3c	ENSMUST00000032992.6:c.2360G>T	ENSMUSP00000032992.4:p.Arg787Met	H-2-Kb	9	11	1	MTYLFTYSS	RTYLFTYSS	SMM	195.483	371.629	1.901	93	0.247	432.287	663.22	1.534	1429.38	786.69	524.3	433.8	371.6293451	195.4834522	802.1396792	430.7745129	M7_p20	0.242857143	0.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.265	93	0	0	NA	7qF3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr8	40380689	40380689	G	A	ENSMUST00000068999.13	5	ENSMUSG00000039478	missense	V/I	455	Micu3	ENSMUST00000068999.13:c.1363G>A	ENSMUSP00000070241.7:p.Val455Ile	H-2-Kb	8	10	2	AIYVATGL	AVYVATGL	NetMHC	29.49	43.16	1.464	269	0.156	69.176	86.184	1.246	43.16	29.49	44.8	52.7	134.5054866	85.65249141	127.5674869	90.93686959	M7_p20	1.7	1.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.156	269	0	0	NA	8qA4	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.728925614	sgMsh2	cell line
chr8	88308681	88308681	T	G	ENSMUST00000171456.8	1	ENSMUSG00000031659	missense	L/R	71	Adcy7	ENSMUST00000171456.8:c.212T>G	ENSMUSP00000132528.1:p.Leu71Arg	H-2-Kb	8	8	4	TAFRMLTL	TAFLMLTL	NetMHCpan	29.4	51.9	1.765	147	0.15	80.349	113.425	1.412	108.07	64.15	51.9	29.4	118.7790917	97.44061133	118.7790917	96.54727043	M7_p20	1.271428571	1.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.154	147	0	0	NA	8qC3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.719580414	sgMsh2	cell line
chr8	71507993	71507993	G	A	ENSMUST00000048452.5	1	ENSMUSG00000034845	missense	P/S	260	Plvap	ENSMUST00000048452.5:c.778C>T	ENSMUSP00000035404.4:p.Pro260Ser	H-2-Kb	8	9	3	LMSEYASL	LMPEYASL	NetMHC	72.13	12.97	0.18	82	0.098	165.449	73.791	0.446	12.97	72.13	58.1	108.7	89.4828896	239.7397234	91.98986892	222.1979255	M7_p20	0.157142857	0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.096	82	0	0	NA	8qB3.3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.448569609	sgMsh2	cell line
chr8	84090184	84090184	A	G	ENSMUST00000005600.5	1	ENSMUSG00000031706	missense	Y/C	448	Rfx1	ENSMUST00000005600.5:c.1343A>G	ENSMUSP00000005600.5:p.Tyr448Cys	H-2-Kb	8	6	6	TLYCHCLL	TLYCHYLL	NetMHCpan	80.9	40	0.494	62	0.21	162.666	120.547	0.741	127.4	230.66	40	80.9	113.6946424	154.4329616	132.0504848	170.8991883	M7_p20	1.7	1.7	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.256	62	0	0	NA	8qC2	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr8	66704576	66704576	T	G	ENSMUST00000039303.6	1	ENSMUSG00000036437	missense	V/G	216	Npy1r	ENSMUST00000039303.6:c.647T>G	ENSMUSP00000045530.5:p.Val216Gly	H-2-Kb	8	11	1	GLQYFGPL	VLQYFGPL	NetMHC	232.2	21.27	0.092	135	0.2	412.807	40.168	0.097	21.27	232.2	29.9	298.7	51.72970479	827.4466462	50.43592613	526.9143181	M7_p20	0.514285714	0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.216	135	0	0	NA	8qB3.1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr8	88308681	88308681	T	G	ENSMUST00000171456.8	1	ENSMUSG00000031659	missense	L/R	71	Adcy7	ENSMUST00000171456.8:c.212T>G	ENSMUSP00000132528.1:p.Leu71Arg	H-2-Kb	8	6	6	LGTAFRML	LGTAFLML	NetMHC	239.18	645.82	2.7	147	0.15	277.583	372.362	1.341	645.82	239.18	297.2	304.6	360.3628392	270.2340064	384.3616066	284.9311953	M7_p20	0.671428571	0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.154	147	0	0	NA	8qC3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.719580414	sgMsh2	cell line
chr8	10506541	10506541	A	G	ENSMUST00000207477.1	1	ENSMUSG00000039057	missense	T/A	1001	Myo16	ENSMUST00000207477.1:c.3001A>G	ENSMUSP00000146677.1:p.Thr1001Ala	H-2-Kb	8	9	3	TSAFLQRL	TSTFLQRL	NetMHCpan	143.9	165.1	1.147	155	0.123	377.044	365.378	0.969	321.74	387.87	165.1	143.9	409.0157201	366.2182643	498.5859086	494.0148455	M7_p20	0.485714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.122	155	0	0	NA	8qA1.1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.570057211	sgMsh2	cell line
chr8	70398314	70398314	C	T	ENSMUST00000076615.5	1	ENSMUSG00000003575	missense	C/Y	216	Crtc1	ENSMUST00000076615.5:c.647G>A	ENSMUSP00000075916.5:p.Cys216Tyr	H-2-Kb	8	9	3	KSYEVPGI	KSCEVPGI	NetMHCpan	357.9	11426.6	31.927	85	0.188	442.04	8252.577	18.669	15945.61	452.82	11426.6	357.9	5078.553127	431.2608157	4997.352678	502.041941	M7_p20	0.157142857	0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.196	85	0	0	NA	8qB3.3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.915829618	sgMsh2	cell line
chr8	60933131	60933131	A	G	ENSMUST00000004430.13	1	ENSMUSG00000004319	missense	F/L	296	Clcn3	ENSMUST00000004430.13:c.886T>C	ENSMUSP00000004430.7:p.Phe296Leu	H-2-Kb	8	11	1	LSYLFPKY	FSYLFPKY	SMMPMBEC	193.526	164.718	0.851	179	0.469	405.461	373.119	0.92	488.76	453.04	564.3	542.4	257.4779247	357.8821189	164.7175978	193.5263029	M7_p20	-0.328571429	0.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.457	179	0	0	NA	8qB3.1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr8	54665014	54665014	T	C	ENSMUST00000144711.8	1	ENSMUSG00000039375	missense	K/R	556	Wdr17	ENSMUST00000144711.8:c.1667A>G	ENSMUSP00000117710.2:p.Lys556Arg	H-2-Kb	8	8	4	FHVRWSPL	FHVKWSPL	SMMPMBEC	280.375	511.376	1.824	289	0.183	321.318	559.573	1.741	848.67	461.95	504.2	307.1	607.7710368	335.5366776	511.3755976	280.3754606	M7_p20	-0.428571429	-0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.192	289	0	0	NA	8qB1.3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.897139218	sgMsh2	cell line
chr8	53587238	53587238	A	T	ENSMUST00000047768.10	1	ENSMUSG00000039396	missense	N/K	576	Neil3	ENSMUST00000047768.10:c.1728T>A	ENSMUSP00000041909.4:p.Asn576Lys	H-2-Kb	8	10	2	KKFFVCPL	KNFFVCPL	SMM	299.047	60.777	0.203	83	0.482	453.597	69.627	0.153	97.25	1737.39	18	546	60.77710368	299.0473787	78.47656766	361.1935614	M7_p20	1.514285714	1.514285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.472	83	0	0	NA	8qB1.3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	3	1	sgMsh2	cell line
chr8	71461316	71461316	C	T	ENSMUST00000008094.9	1	ENSMUSG00000007950	missense	A/T	223	Abhd8	ENSMUST00000008094.9:c.667G>A	ENSMUSP00000008094.8:p.Ala223Thr	H-2-Kb	9	3	9	AAYTFYALT	AAYTFYALA	NetMHC	9.36	7.34	0.784	68	0.118	25.373	33.525	1.321	7.34	9.36	11.3	14.5	58.09115347	37.42053566	55.75065832	36.24515823	M7_p20	0.628571429	0.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.139	68	0	0	NA	8qB3.3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.649491413	sgMsh2	cell line
chr8	66704576	66704576	T	G	ENSMUST00000039303.6	1	ENSMUSG00000036437	missense	V/G	216	Npy1r	ENSMUST00000039303.6:c.647T>G	ENSMUSP00000045530.5:p.Val216Gly	H-2-Kb	9	10	2	LGLQYFGPL	LVLQYFGPL	NetMHC	9.41	10.49	1.115	135	0.2	60.128	37.163	0.618	10.49	9.41	15	12.3	74.83590241	157.438158	59.32667381	107.9567993	M7_p20	0.514285714	0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.216	135	0	0	NA	8qB3.1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr8	64968763	64968763	T	A	ENSMUST00000026595.12	1	ENSMUSG00000025521	missense	Y/N	244	Tmem192	ENSMUST00000026595.12:c.730T>A	ENSMUSP00000026595.5:p.Tyr244Asn	H-2-Kb	9	10	2	VNLKRHNAL	VYLKRHNAL	NetMHC	34.04	134.06	3.938	198	0.247	64.478	127.715	1.981	134.06	34.04	385.2	63	121.3696222	69.04146529	115.1463034	65.95534555	M7_p20	-0.814285714	-0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.248	198	0	0	NA	8qB3.1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr8	54665014	54665014	T	C	ENSMUST00000144711.8	1	ENSMUSG00000039375	missense	K/R	556	Wdr17	ENSMUST00000144711.8:c.1667A>G	ENSMUSP00000117710.2:p.Lys556Arg	H-2-Kb	9	7	5	VFHVRWSPL	VFHVKWSPL	SMM	36.992	55.349	1.496	289	0.183	40.508	60.35	1.49	50.57	39.4	239.9	169.2	55.34902819	36.99218633	65.35066331	41.61500968	M7_p20	-0.428571429	0.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.192	289	0	0	NA	8qB1.3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.897139218	sgMsh2	cell line
chr8	72204426	72204426	A	G	ENSMUST00000098630.4	1	ENSMUSG00000074240	missense	F/L	156	Cib3	ENSMUST00000098630.4:c.466T>C	ENSMUSP00000096231.3:p.Phe156Leu	H-2-Kb	9	9	9	RAPDFLSTL	RAPDFLSTF	NetMHC	58.26	423.47	7.269	220	0.1	228.532	537.632	2.353	423.47	58.26	324.4	70.6	651.7934622	386.4648502	946.7820161	547.3309412	M7_p20	0.542857143	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.106	220	0	0	NA	8qB3.3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.49529561	sgMsh2	cell line
chr8	83668275	83668275	T	C	ENSMUST00000019608.6	1	ENSMUSG00000019464	missense	L/P	127	Ptger1	ENSMUST00000019608.6:c.380T>C	ENSMUSP00000019608.5:p.Leu127Pro	H-2-Kb	9	4	8	VFFGLCPPL	VFFGLCPLL	SMM	82.435	104.981	1.274	27	0.148	85.654	119.254	1.392	118.49	85.16	154.5	106.6	104.9808295	82.43468827	120.0189989	86.14895227	M7_p20	1.328571429	2.014285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.222	27	0	0	NA	8qC2	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr8	88308681	88308681	T	G	ENSMUST00000171456.8	1	ENSMUSG00000031659	missense	L/R	71	Adcy7	ENSMUST00000171456.8:c.212T>G	ENSMUSP00000132528.1:p.Leu71Arg	H-2-Kb	9	8	4	TAFRMLTLF	TAFLMLTLF	NetMHCpan	130.1	292.7	2.25	147	0.15	139.907	123.623	0.884	121.28	130.84	292.7	130.1	101.8849414	148.9738357	125.9650316	169.531342	M7_p20	1.414285714	1.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.154	147	0	0	NA	8qC3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.719580414	sgMsh2	cell line
chr8	3511725	3511725	T	C	ENSMUST00000004683.12	1	ENSMUSG00000004567	missense	V/A	425	Mcoln1	ENSMUST00000004683.12:c.1274T>C	ENSMUSP00000004683.6:p.Val425Ala	H-2-Kb	9	10	2	SAMRFCCCV	SVMRFCCCV	NetMHC	154.29	224.62	1.456	281	0.181	407.87	486.321	1.192	224.62	154.29	307.2	225.2	665.4416808	591.7114865	682.7315929	590.540925	M7_p20	1.7	1.7	FALSE	FALSE	FALSE	3	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.188	281	0	0	NA	8qA1.1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.878448817	sgMsh2	cell line
chr8	84090184	84090184	A	G	ENSMUST00000005600.5	1	ENSMUSG00000031706	missense	Y/C	448	Rfx1	ENSMUST00000005600.5:c.1343A>G	ENSMUSP00000005600.5:p.Tyr448Cys	H-2-Kb	9	5	7	STLYCHCLL	STLYCHYLL	NetMHC	169.86	124.11	0.731	62	0.21	350.723	303.594	0.866	124.11	169.86	249	294.9	358.1871488	406.5462879	417.1094219	428.7952838	M7_p20	1.7	1.7	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.256	62	0	0	NA	8qC2	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr8	72002469	72002469	A	T	ENSMUST00000003574.4	1	ENSMUSG00000003484	missense	C/S	88	Cyp4f18	ENSMUST00000003574.4:c.262T>A	ENSMUSP00000003574.4:p.Cys88Ser	H-2-Kb	9	10	2	ASCWWVGPL	ACCWWVGPL	NetMHCpan	203.7	2136.6	10.489	122	0.213	285.435	2448.939	8.58	3889.69	231.83	2136.6	203.7	2761.277156	654.8020042	964.3840079	339.0392667	M7_p20	0.957142857	0.957142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.192	122	0	0	NA	8qB3.3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.897139218	sgMsh2	cell line
chr8	83668425	83668425	A	G	ENSMUST00000019608.6	1	ENSMUSG00000019464	missense	H/R	177	Ptger1	ENSMUST00000019608.6:c.530A>G	ENSMUSP00000019608.5:p.His177Arg	H-2-Kb	9	4	8	VALLPLVRV	VALLPLVHV	NetMHC	257.84	301.42	1.169	39	0.128	379.784	418.959	1.103	301.42	257.84	963.4	1025.1	359.0128555	332.7438214	478.9056933	426.8251484	M7_p20	1.957142857	2.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.192	39	0	0	NA	8qC2	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.897139218	sgMsh2	cell line
chr8	88308681	88308681	T	G	ENSMUST00000171456.8	1	ENSMUSG00000031659	missense	L/R	71	Adcy7	ENSMUST00000171456.8:c.212T>G	ENSMUSP00000132528.1:p.Leu71Arg	H-2-Kb	9	11	1	RMLTLFVAL	LMLTLFVAL	NetMHCpan	133.8	233.9	1.748	147	0.15	236.285	189.074	0.8	243.12	268.08	233.9	133.8	144.2480663	244.4049514	122.5321348	228.165512	M7_p20	2.785714286	2.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.154	147	0	0	NA	8qC3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.719580414	sgMsh2	cell line
chr8	64968767	64968767	T	C	ENSMUST00000026595.12	1	ENSMUSG00000025521	missense	L/P	245	Tmem192	ENSMUST00000026595.12:c.734T>C	ENSMUSP00000026595.5:p.Leu245Pro	H-2-Kb	9	9	3	VYPKRHNAL	VYLKRHNAL	SMM	208.022	121.37	0.583	195	0.246	252.033	127.715	0.507	134.06	286.67	385.2	1208.2	121.3696222	208.0223508	115.1463034	217.3952246	M7_p20	-1.585714286	-1.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.242	195	0	0	NA	8qB3.1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr8	86527358	86527358	TA	T	ENSMUST00000131423.7	5	ENSMUSG00000036872	FS	F/X	932	Abcc12	ENSMUST00000131423.7:c.2796del	ENSMUSP00000122402.1:p.Phe932LeufsTer8	H-2-Kb	9	8	4	QQFLWWCLF	NA	SMM	208.502	NA	NA	57	0.333	339.211	NA	NA	NA	364.19	NA	826.8	NA	208.5018919	NA	314.2317036	M7_p20	1.985714286	1.985714286	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.319	57	0	0	NA	8qC3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr8	71507993	71507993	G	A	ENSMUST00000048452.5	1	ENSMUSG00000034845	missense	P/S	260	Plvap	ENSMUST00000048452.5:c.778C>T	ENSMUSP00000035404.4:p.Pro260Ser	H-2-Kb	9	8	4	QLMSEYASL	QLMPEYASL	NetMHCpan	375.7	393.2	1.047	82	0.098	490.684	816.002	1.663	700.66	439.23	393.2	375.7	931.3437404	542.1381881	1127.84651	792.9576622	M7_p20	0.157142857	0.157142857	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.096	82	0	0	NA	8qB3.3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.448569609	sgMsh2	cell line
chr8	70078389	70078389	A	G	ENSMUST00000110160.8	1	ENSMUSG00000036151	missense	Y/C	264	Tm6sf2	ENSMUST00000110160.8:c.791A>G	ENSMUSP00000105788.2:p.Tyr264Cys	H-2-Kb	9	9	3	VACPKLQML	VAYPKLQML	SMMPMBEC	273.684	38.129	0.139	183	0.191	454.116	26.502	0.058	21.3	546.73	19.9	1159.1	31.70370367	361.5014137	38.12852457	273.6843727	M7_p20	0.428571429	0.471428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.191	183	0	0	NA	8qB3.3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.892466618	sgMsh2	cell line
chr8	60933131	60933131	A	G	ENSMUST00000004430.13	1	ENSMUSG00000004319	missense	F/L	296	Clcn3	ENSMUST00000004430.13:c.886T>C	ENSMUSP00000004430.7:p.Phe296Leu	H-2-Kb	9	11	1	LSYLFPKYS	FSYLFPKYS	SMM	242.164	248.949	1.028	179	0.469	478.777	542.536	1.133	1381.05	1260.21	550.2	491.7	248.9487787	242.1642333	534.872168	465.8541836	M7_p20	-0.328571429	0.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.457	179	0	0	NA	8qB3.1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr8	111688682	111688682	T	G	ENSMUST00000034435.6	1	ENSMUSG00000031957	missense	D/A	120	Ctrb1	ENSMUST00000034435.6:c.359A>C	ENSMUSP00000034435.5:p.Asp120Ala	H-2-Db	9	6	6	FTVRNAITL	FTVRNDITL	NetMHC	11.76	23.98	2.039	77	0.182	69.176	86.239	1.247	23.98	11.76	37.7	23.9	134.778308	114.4511076	138.2197172	117.9152565	M7_p20	0.8	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.196	77	0	0	NA	8qE1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.915829618	sgMsh2	cell line
chr8	111504457	111504457	A	G	ENSMUST00000034437.7	1	ENSMUSG00000031959	missense	Y/H	40	Wdr59	ENSMUST00000034437.7:c.118T>C	ENSMUSP00000034437.7:p.Tyr40His	H-2-Kb	8	5	7	SGRRFLHI	SGRRFLYI	NetMHC	86.4	125.88	1.457	226	0.181	194.02	184.068	0.949	125.88	86.4	157.4	170.4	210.7366151	220.6683258	223.738128	217.6406428	M7_p20	-0.214285714	-0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.204	226	0	0	NA	8qE1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.953210419	sgMsh2	cell line
chr8	91096777	91096777	A	C	ENSMUST00000034091.7	1	ENSMUSG00000031666	missense	K/N	487	Rbl2	ENSMUST00000034091.7:c.1461A>C	ENSMUSP00000034091.7:p.Lys487Asn	H-2-Kb	8	11	1	NHFRFAEM	KHFRFAEM	NetMHC	86.94	15.02	0.173	162	0.265	143.663	41.161	0.287	15.02	86.94	27.4	128.2	55.42937734	166.241711	54.92119775	159.1255801	M7_p20	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.238	162	0	0	NA	8qC4	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr8	91087019	91087019	A	T	ENSMUST00000034091.7	1	ENSMUSG00000031666	missense	L/F	340	Rbl2	ENSMUST00000034091.7:c.1020A>T	ENSMUSP00000034091.7:p.Leu340Phe	H-2-Kb	8	9	3	YVFAAGNL	YVLAAGNL	NetMHCpan	70.5	600.1	8.512	162	0.259	98.87	545.923	5.522	778.93	93.33	600.1	70.5	436.2545806	104.4094962	491.7450535	113.6946424	M7_p20	1.5	1.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.263	162	0	0	NA	8qC4	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr8	110609672	110609672	G	T	ENSMUST00000043141.6	1	ENSMUSG00000059854	missense	S/I	5027	Hydin	ENSMUST00000043141.6:c.15080G>T	ENSMUSP00000046204.6:p.Ser5027Ile	H-2-Kb	8	6	6	VFFEPIHL	VFFEPSHL	SMM	70.915	50.786	0.716	147	0.259	116.563	75.56	0.648	78.05	130.15	111	140.7	50.78553127	70.91530907	73.07015019	102.9769442	M7_p20	0.8	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.261	147	0	0	NA	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr9	18945178	18945178	CT	C	ENSMUST00000218385.1	5	ENSMUSG00000095957	FS	F/X	177	Olfr832	ENSMUST00000218385.1:c.535del	ENSMUSP00000151834.1:p.Cys179ValfsTer24	H-2-Kb	8	14	0	NWLIFSSL	NA	NetMHC	230.76	NA	NA	180	0.356	292.404	NA	NA	NA	230.76	NA	280.2	NA	318.9627742	NA	304.6070846	M7_p20	1.771428571	1.771428571	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;Vardict	3	0.335	180	0	0	NA	9qA2	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr8	106131676	106131676	A	C	ENSMUST00000115979.8	1	ENSMUSG00000084128	missense	F/L	684	Esrp2	ENSMUST00000115979.8:c.2052T>G	ENSMUSP00000111639.2:p.Phe684Leu	H-2-Kb	8	9	3	SVLQAYQL	SVFQAYQL	NetMHCpan	279.8	34.1	0.122	150	0.153	297.844	56.276	0.189	45.45	340.13	34.1	279.8	67.10270075	280.3754606	72.90209351	315.3116375	M7_p20	0.757142857	0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.156	150	0	0	NA	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.728925614	sgMsh2	cell line
chr8	124030388	124030388	T	C	ENSMUST00000034457.8	1	ENSMUSG00000031976	missense	C/R	945	Urb2	ENSMUST00000034457.8:c.2833T>C	ENSMUSP00000034457.8:p.Cys945Arg	H-2-Kb	8	8	4	LVKRYRLL	LVKCYRLL	SMMPMBEC	282.319	617.647	2.188	164	0.165	362.76	684.41	1.887	1193.58	345.62	499.5	379.9	751.173053	380.8377582	617.6465217	282.3189304	M7_p20	-0.342857143	-0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.182	164	0	0	NA	8qE2	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.850413217	sgMsh2	cell line
chr9	8901181	8901181	TA	T	ENSMUST00000189181.6	1	ENSMUSG00000031870	FS	L/X	238	Pgr	ENSMUST00000189181.6:c.716del	ENSMUSP00000140124.1:p.Lys239ArgfsTer73	H-2-Kb	8	45	0	KIHGFLLL	NA	NetMHCpan	154.8	NA	NA	17	0.353	279.731	NA	NA	NA	471.67	NA	154.8	NA	279.7306149	NA	279.7306149	M7_p20	2.157142857	2.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.33	17	0	0	NA	9qA1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr8	123421489	123421489	C	A	ENSMUST00000071134.3	1	ENSMUSG00000062380	missense	A/D	387	Tubb3	ENSMUST00000071134.3:c.1160C>A	ENSMUSP00000071134.3:p.Ala387Asp	H-2-Kb	8	5	7	ISEQFTDM	ISEQFTAM	SMMPMBEC	179.366	54.293	0.303	426	0.183	409.131	71.739	0.175	70.91	556.6	215.1	1020.5	72.56713881	261.6616044	54.29252	179.3659491	M7_p20	-1.042857143	-0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.186	426	0	0	NA	8qE1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.869103617	sgMsh2	cell line
chr8	122813653	122813653	A	G	ENSMUST00000015160.5	5	ENSMUSG00000015016	missense	D/G	530	Acsf3	ENSMUST00000015160.5:c.1589A>G	ENSMUSP00000015160.5:p.Asp530Gly	H-2-Kb	8	5	7	HSLSHGGL	HSLSHGDL	SMMPMBEC	233.206	636.414	2.729	110	0.264	416.617	1748.884	4.198	2775.43	567.32	4133.4	1087.4	722.337231	265.9132635	636.4144033	233.2061504	M7_p20	0.285714286	0.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.261	110	0	0	NA	8qE1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr9	4664969	4664969	C	CA	ENSMUST00000027020.12	5	ENSMUSG00000025892	FS	-/X	95-96	Gria4	ENSMUST00000027020.12:c.285dup	ENSMUSP00000027020.6:p.Gly96TrpfsTer4	H-2-Kb	8	7	6	VFAIFWTL	VFAIFGLY	SMM	69.781	2628.694	37.67	95	0.221	175.11	4715.847	26.931	7797.57	572.28	6803	236	2628.693795	69.78145169	2386.382195	114.219433	M7_p20	2.014285714	2.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.226	95	0	0	NA	9qA1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr8	113775269	113775269	G	A	ENSMUST00000093113.4	1	ENSMUSG00000053399	missense	T/I	320	Adamts18	ENSMUST00000093113.4:c.959C>T	ENSMUSP00000090801.4:p.Thr320Ile	H-2-Kb	8	6	6	TTYILIVM	TTYILTVM	SMM	348.129	315.312	0.906	211	0.175	404.208	322.362	0.798	371.96	735.65	145.7	430.2	315.3116375	348.1288376	329.4124431	378.2160895	M7_p20	2.414285714	2.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.189	211	0	0	NA	8qE1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.883121418	sgMsh2	cell line
chr9	18945178	18945178	CT	C	ENSMUST00000218385.1	5	ENSMUSG00000095957	FS	F/X	177	Olfr832	ENSMUST00000218385.1:c.535del	ENSMUSP00000151834.1:p.Cys179ValfsTer24	H-2-Kb	9	13	1	VNWLIFSSL	NA	NetMHCpan	13.8	NA	NA	180	0.356	37.802	NA	NA	NA	16.16	NA	13.8	NA	59.44427026	NA	61.69500447	M7_p20	1.771428571	1.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.335	180	0	0	NA	9qA2	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr8	124028714	124028714	T	C	ENSMUST00000034457.8	1	ENSMUSG00000031976	missense	F/L	387	Urb2	ENSMUST00000034457.8:c.1159T>C	ENSMUSP00000034457.8:p.Phe387Leu	H-2-Kb	9	9	3	TQLHFYRRV	TQFHFYRRV	NetMHC	29.79	12.91	0.433	213	0.183	159.586	53.794	0.337	12.91	29.79	11.9	56.6	96.18558706	269.8422814	94.67820161	262.57296	M7_p20	-0.385714286	-0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.189	213	0	0	NA	8qE2	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.883121418	sgMsh2	cell line
chr8	113775269	113775269	G	A	ENSMUST00000093113.4	1	ENSMUSG00000053399	missense	T/I	320	Adamts18	ENSMUST00000093113.4:c.959C>T	ENSMUSP00000090801.4:p.Thr320Ile	H-2-Kb	9	11	1	IVMNMVSSL	TVMNMVSSL	NetMHCpan	52.8	154	2.917	211	0.175	176.346	339.812	1.927	210.54	69.39	154	52.8	522.5285205	304.8667072	469.0833305	283.3022345	M7_p20	0.957142857	1.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.189	211	0	0	NA	8qE1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.883121418	sgMsh2	cell line
chr9	8901181	8901181	TA	T	ENSMUST00000189181.6	1	ENSMUSG00000031870	FS	L/X	238	Pgr	ENSMUST00000189181.6:c.716del	ENSMUSP00000140124.1:p.Lys239ArgfsTer73	H-2-Kb	9	7	6	AAPLLRANL	AAPLLKSKP	NetMHC	90.54	28823.73	318.354	17	0.353	492.823	19343.288	39.25	28823.73	90.54	28257.4	198.4	6685.132201	787.2451613	10429.17608	875.4876014	M7_p20	0.514285714	0.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.33	17	0	0	NA	9qA1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr8	91096777	91096777	A	C	ENSMUST00000034091.7	1	ENSMUSG00000031666	missense	K/N	487	Rbl2	ENSMUST00000034091.7:c.1461A>C	ENSMUSP00000034091.7:p.Lys487Asn	H-2-Kb	9	10	2	NNHFRFAEM	NKHFRFAEM	NetMHC	229.62	1954.12	8.51	162	0.265	250.217	1579.731	6.313	1954.12	229.62	4212.7	309.8	1205.341196	256.5133662	1077.085055	243.9214539	M7_p20	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.238	162	0	0	NA	8qC4	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr8	110609672	110609672	G	T	ENSMUST00000043141.6	1	ENSMUSG00000059854	missense	S/I	5027	Hydin	ENSMUST00000043141.6:c.15080G>T	ENSMUSP00000046204.6:p.Ser5027Ile	H-2-Kb	9	3	9	SVEVFFEPI	SVEVFFEPS	NetMHCpan	204.2	4998.9	24.48	147	0.259	300.236	2557.842	8.519	4275.74	248.71	4998.9	204.2	597.1865254	393.6497682	839.9433576	351.7628732	M7_p20	0.814285714	0.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.261	147	0	0	NA	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr8	111504457	111504457	A	G	ENSMUST00000034437.7	1	ENSMUSG00000031959	missense	Y/H	40	Wdr59	ENSMUST00000034437.7:c.118T>C	ENSMUSP00000034437.7:p.Tyr40His	H-2-Kb	9	4	8	LSGRRFLHI	LSGRRFLYI	SMMPMBEC	269.308	294.612	1.094	226	0.181	326.091	405.846	1.245	419.85	276.25	493.2	412.7	391.8411118	375.9326101	294.6117067	269.3084622	M7_p20	-0.214285714	0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.204	226	0	0	NA	8qE1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.953210419	sgMsh2	cell line
chr8	124030388	124030388	T	C	ENSMUST00000034457.8	1	ENSMUSG00000031976	missense	C/R	945	Urb2	ENSMUST00000034457.8:c.2833T>C	ENSMUSP00000034457.8:p.Cys945Arg	H-2-Kb	9	7	5	FLVKRYRLL	FLVKCYRLL	NetMHC	330.36	1005.73	3.044	164	0.165	448.134	1220.639	2.724	1005.73	330.36	1210.3	459.5	1312.532301	472.1826226	1230.977174	436.7671833	M7_p20	-0.342857143	-0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.182	164	0	0	NA	8qE2	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.850413217	sgMsh2	cell line
chr8	123421489	123421489	C	A	ENSMUST00000071134.3	1	ENSMUSG00000062380	missense	A/D	387	Tubb3	ENSMUST00000071134.3:c.1160C>A	ENSMUSP00000071134.3:p.Ala387Asp	H-2-Kb	9	11	1	DMFRRKAFL	AMFRRKAFL	SMM	250.098	88.738	0.355	426	0.183	337.194	74.147	0.22	28.95	374.3	64.3	742.7	88.73807432	250.097874	83.99433576	300.0889473	M7_p20	-0.242857143	-0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.186	426	0	0	NA	8qE1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.869103617	sgMsh2	cell line
chr8	91220227	91220227	G	A	ENSMUST00000047783.13	1	ENSMUSG00000033282	missense	H/Y	1249	Rpgrip1l	ENSMUST00000047783.13:c.3745C>T	ENSMUSP00000042702.7:p.His1249Tyr	H-2-Kb	9	5	7	VTVEALYAL	VTVEALHAL	NetMHCpan	344.5	439.4	1.275	159	0.195	475.124	773.172	1.627	789.32	381.25	439.4	344.5	757.0246132	568.9970306	962.1659863	803.9888022	M7_p20	1.514285714	1.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.196	159	0	0	NA	8qC4	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.915829618	sgMsh2	cell line
chr8	111504457	111504457	A	G	ENSMUST00000034437.7	1	ENSMUSG00000031959	missense	Y/H	40	Wdr59	ENSMUST00000034437.7:c.118T>C	ENSMUSP00000034437.7:p.Tyr40His	H-2-Kb	9	7	5	RRFLHIVNL	RRFLYIVNL	NetMHCpan	322.2	193.1	0.599	226	0.181	490.433	359.657	0.733	288.54	439.8	193.1	322.2	440.6664633	549.6800816	430.7745129	541.0656958	M7_p20	1.771428571	1.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.204	226	0	0	NA	8qE1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.953210419	sgMsh2	cell line
chr9	39772552	39772552	C	T	ENSMUST00000216458.2	5	ENSMUSG00000095903	missense	V/M	83	Olfr968	ENSMUST00000216458.2:c.247G>A	ENSMUSP00000148969.1:p.Val83Met	H-2-Db	9	8	4	KMLMNFVTV	KMLVNFVTV	NetMHC	9.79	7.69	0.785	681	0.25	33.013	23.288	0.705	7.69	9.79	23.1	21.5	23.47577833	44.52664776	26.70361144	47.05112371	M7_p20	1.814285714	1.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.251	681	0	0	NA	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr9	40978194	40978194	A	G	ENSMUST00000180384.2	1	ENSMUSG00000032021	missense	L/P	295	Crtam	ENSMUST00000180384.2:c.884T>C	ENSMUSP00000137837.1:p.Leu295Pro	H-2-Db	9	4	8	SGILLLTPV	SGILLLTLV	NetMHC	128.59	1036.29	8.059	152	0.217	206.747	925.094	4.475	1036.29	128.59	1887.2	193.9	707.3266152	219.5937625	813.8980351	245.2279683	M7_p20	2.542857143	2.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.218	152	0	0	NA	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr9	67346506	67346506	G	A	ENSMUST00000040025.13	5	ENSMUSG00000052698	missense	T/I	761	Tln2	ENSMUST00000040025.13:c.2282C>T	ENSMUSP00000039633.7:p.Thr761Ile	H-2-Db	9	9	3	AAISDSELL	AATSDSELL	NetMHCpan	189.4	3979.3	21.01	13	0.231	312.541	3026.199	9.683	6089.13	264.03	3979.3	189.4	2073.098799	402.3648181	1877.457004	361.0522036	M7_p20	0.5	0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.232	13	0	0	NA	9qC	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr9	38877830	38877830	T	C	ENSMUST00000078289.2	NA	ENSMUSG00000064333	missense	I/T	218	Olfr926	ENSMUST00000078289.2:c.653T>C	ENSMUSP00000077405.2:p.Ile218Thr	H-2-Db	9	8	4	YAFTLTSIL	YAFILTSIL	NetMHC	302.44	508.52	1.681	506	0.223	427.2	529.423	1.239	508.52	302.44	347.5	317.9	550.3259602	541.5268566	555.3541224	536.5003381	M7_p20	1.814285714	1.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.232	506	0	0	NA	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr9	39873961	39873961	TA	T	ENSMUST00000215303.2	2	ENSMUSG00000094449	FS	K/X	229	Olfr972	ENSMUST00000215303.2:c.687del	ENSMUSP00000150389.1:p.Lys229AsnfsTer57	H-2-Db	9	5	7	ASILQINPL	ASILQIKST	NetMHCpan	210.7	26622.6	126.353	344	0.259	343.127	27752.058	80.88	38748.74	660.68	26622.6	210.7	28881.51695	411.7370988	16276.83646	274.5174778	M7_p20	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;Vardict	3	0.26	344	0	0	NA	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr9	24658629	24658629	T	C	ENSMUST00000133010.3	1	ENSMUSG00000085576	missense	M/V	343	Dpy19l2	ENSMUST00000133010.3:c.1027A>G	ENSMUSP00000132092.1:p.Met343Val	H-2-Kb	8	11	1	VALCFSNV	MALCFSNV	NetMHC	5.15	12.05	2.34	167	0.257	16.038	37.379	2.331	12.05	5.15	33	12.5	41.75802981	19.57672319	55.04780419	25.98603386	M7_p20	1.542857143	1.542857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.264	167	0	0	NA	9qA4	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr9	39719434	39719434	T	C	ENSMUST00000215164.2	5	ENSMUSG00000095839	missense	I/T	69	Olfr965	ENSMUST00000215164.2:c.206T>C	ENSMUSP00000150401.1:p.Ile69Thr	H-2-Kb	8	6	6	SSLSFTDL	SSLSFIDL	NetMHC	7.06	8.67	1.228	421	0.252	21.504	26.028	1.21	8.67	7.06	22.9	16.6	29.15680954	26.40827294	32.48927349	28.29697428	M7_p20	0.657142857	0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.256	421	0	0	NA	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr9	38877830	38877830	T	C	ENSMUST00000078289.2	NA	ENSMUSG00000064333	missense	I/T	218	Olfr926	ENSMUST00000078289.2:c.653T>C	ENSMUSP00000077405.2:p.Ile218Thr	H-2-Kb	8	6	6	ISYAFTLT	ISYAFILT	NetMHC	8.32	17.61	2.117	506	0.223	18.314	25.95	1.417	17.61	8.32	25	13.2	36.20261985	32.78989304	26.89923939	23.42825811	M7_p20	0.7	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.232	506	0	0	NA	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr9	37898061	37898061	T	C	ENSMUST00000086062.3	NA	ENSMUSG00000066748	missense	L/P	219	Olfr145	ENSMUST00000086062.3:c.656T>C	ENSMUSP00000083229.2:p.Leu219Pro	H-2-Kb	8	5	7	IFISYAPI	IFISYALI	NetMHC	12.51	34.39	2.749	206	0.189	18.45	49.782	2.698	34.39	12.51	60.8	31.9	51.72970479	19.53169797	47.83436356	17.36760767	M7_p20	1.414285714	1.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.194	206	0	0	NA	9qA4	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.906484418	sgMsh2	cell line
chr9	39426542	39426542	G	T	ENSMUST00000073895.3	NA	ENSMUSG00000058856	missense	H/Q	176	Olfr952	ENSMUST00000073895.3:c.528C>A	ENSMUSP00000073558.3:p.His176Gln	H-2-Kb	8	9	3	INQYFCDL	INHYFCDL	NetMHC	37.83	26.98	0.713	123	0.138	77.132	50.321	0.652	26.98	37.83	29.4	71.9	71.90183929	82.36448742	71.24263926	104.4094962	M7_p20	-0.385714286	-0.285714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;MuSe;Vardict	3	0.135	123	0	0	NA	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.630801013	sgMsh2	cell line
chr9	39873961	39873961	TA	T	ENSMUST00000215303.2	2	ENSMUSG00000094449	FS	K/X	229	Olfr972	ENSMUST00000215303.2:c.687del	ENSMUSP00000150389.1:p.Lys229AsnfsTer57	H-2-Kb	8	23	0	AAHTYQLL	NA	NetMHC	46.15	NA	NA	344	0.259	132.589	NA	NA	NA	46.15	NA	67.6	NA	197.5786438	NA	202.6469166	M7_p20	0.1	0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.26	344	0	0	NA	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr9	57612601	57612601	G	A	ENSMUST00000093832.10	1	ENSMUSG00000056271	missense	T/I	251	Lman1l	ENSMUST00000093832.10:c.752C>T	ENSMUSP00000091352.4:p.Thr251Ile	H-2-Kb	8	7	5	LSFLIFSL	LSFLTFSL	NetMHCpan	36.2	25.9	0.715	159	0.27	64.782	51.031	0.788	19.37	47.2	25.9	36.2	100.8648855	123.5207728	76.16229111	82.36448742	M7_p20	2.3	2.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.276	159	0	0	NA	9qB	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr9	45183178	45183178	C	A	ENSMUST00000034599.14	1	ENSMUSG00000032091	missense	S/I	145	Tmprss4	ENSMUST00000034599.14:c.434G>T	ENSMUSP00000034599.8:p.Ser145Ile	H-2-Kb	8	11	1	IQPAFRAV	SQPAFRAV	NetMHC	87.31	206.86	2.369	134	0.187	159.809	320.511	2.006	206.86	87.31	724.3	373.3	261.0597994	138.5925865	379.9618556	181.0256018	M7_p20	0.142857143	0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.193	134	0	0	NA	9qA5.2	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.901811818	sgMsh2	cell line
chr9	38877830	38877830	T	C	ENSMUST00000078289.2	NA	ENSMUSG00000064333	missense	I/T	218	Olfr926	ENSMUST00000078289.2:c.653T>C	ENSMUSP00000077405.2:p.Ile218Thr	H-2-Kb	8	4	8	VIISYAFT	VIISYAFI	SMMPMBEC	73.07	22.322	0.305	506	0.223	96.651	20.161	0.209	9	92.9	18	419.9	22.89496585	100.4014535	22.32235446	73.07015019	M7_p20	1.542857143	2.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.232	506	0	0	NA	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr9	67395486	67395486	G	A	ENSMUST00000040025.13	5	ENSMUSG00000052698	missense	R/W	68	Tln2	ENSMUST00000040025.13:c.202C>T	ENSMUSP00000039633.7:p.Arg68Trp	H-2-Kb	8	11	1	WTLDYYML	RTLDYYML	SMM	87.245	64.676	0.741	228	0.202	95.715	53.288	0.557	30.87	97.08	41.9	189.6	64.67553055	87.24489012	81.98605697	94.34958625	M7_p20	0.385714286	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.185	228	0	0	NA	9qC	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.864431017	sgMsh2	cell line
chr9	31426949	31426949	T	C	ENSMUST00000048050.8	1	ENSMUSG00000041737	missense	T/A	245	Tmem45b	ENSMUST00000048050.8:c.733A>G	ENSMUSP00000042313.7:p.Thr245Ala	H-2-Kb	8	6	6	VYCFLARV	VYCFLTRV	NetMHCpan	104	145.5	1.399	146	0.267	344.012	994.74	2.892	319.39	115.57	145.5	104	1789.534189	626.2388407	1670.090478	572.4532166	M7_p20	1.328571429	1.328571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.26	146	0	0	NA	9qA4	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr9	35214258	35214258	A	G	ENSMUST00000034541.11	1	ENSMUSG00000032042	missense	M/V	373	Srpr	ENSMUST00000034541.11:c.1117A>G	ENSMUSP00000034541.5:p.Met373Val	H-2-Kb	8	10	2	VVGTFSTV	VMGTFSTV	NetMHC	153.46	124.82	0.813	188	0.266	185.776	206.103	1.109	124.82	153.46	176.3	179.8	255.1173529	220.6683258	235.9065504	191.7520431	M7_p20	1.228571429	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.269	188	0	0	NA	9qA4	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr9	39795557	39795557	CT	C	ENSMUST00000213266.1	2	ENSMUSG00000094254	FS	F/X	61	Olfr969	ENSMUST00000213266.1:c.186del	ENSMUSP00000149551.1:p.Leu63SerfsTer21	H-2-Kb	8	8	6	PMYFFSAV	PMYFFLSS	NetMHCpan	120.6	2859.6	23.711	401	0.264	174.056	2636.808	15.149	7386.46	170.39	2859.6	120.6	1468.047136	177.7215122	2414.015198	232.6697911	M7_p20	1.628571429	1.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.267	401	0	0	NA	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr9	39873961	39873961	TA	T	ENSMUST00000215303.2	2	ENSMUSG00000094449	FS	K/X	229	Olfr972	ENSMUST00000215303.2:c.687del	ENSMUSP00000150389.1:p.Lys229AsnfsTer57	H-2-Kb	8	6	6	SILQINPL	SILQIKST	NetMHC	181.44	24299.42	133.925	344	0.259	244.103	20486.719	83.927	24299.42	181.44	17328.4	232.5	23645.03711	259.2626764	13144.37679	255.7054591	M7_p20	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;Vardict	3	0.26	344	0	0	NA	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr9	39258136	39258136	A	C	ENSMUST00000076903.2	NA	ENSMUSG00000063380	missense	C/G	182	Olfr945	ENSMUST00000076903.2:c.544T>G	ENSMUSP00000076169.2:p.Cys182Gly	H-2-Kb	8	6	6	INHYFGDI	INHYFCDI	NetMHCpan	102	90.9	0.891	348	0.402	276.289	313.213	1.134	217.41	182.12	90.9	102	466.380088	456.8146256	409.0157201	370.458872	M7_p20	-0.657142857	-0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.4	348	0	0	NA	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr9	26825146	26825146	A	G	ENSMUST00000210274.1	1	ENSMUSG00000031966	missense	M/T	540	Glb1l3	ENSMUST00000210274.1:c.1619T>C	ENSMUSP00000147979.1:p.Met540Thr	H-2-Kb	8	10	2	KTSFFKRL	KMSFFKRL	NetMHCpan	88.8	76.6	0.863	167	0.246	200.663	286.637	1.428	179.96	182.68	76.6	88.8	422.4156501	232.6697911	393.3145385	218.6452264	M7_p20	-0.071428571	-0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.225	167	0	0	NA	9qA4	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr9	38976449	38976449	A	G	ENSMUST00000216238.2	2	ENSMUSG00000058515	missense	M/V	258	Olfr933	ENSMUST00000216238.2:c.772A>G	ENSMUSP00000149292.2:p.Met258Val	H-2-Kb	8	8	4	ITFVYFKP	ITFMYFKP	SMMPMBEC	66.335	69.301	1.045	192	0.198	122.729	100.426	0.818	287.56	306.34	112.8	171.2	88.05215715	74.25744462	69.30107956	66.33458249	M7_p20	0.328571429	1.2	FALSE	FALSE	TRUE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.216	192	0	0	NA	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr9	38728677	38728677	T	C	ENSMUST00000001544.11	1	ENSMUSG00000023186	missense	V/A	407	Vwa5a	ENSMUST00000001544.11:c.1220T>C	ENSMUSP00000001544.5:p.Val407Ala	H-2-Kb	8	6	6	SVIREAKL	SVIREVKL	SMMPMBEC	243.075	701.035	2.884	221	0.253	376.099	942.164	2.505	1317.77	366.95	770.7	434	1113.627636	385.2476516	701.0354824	243.0748352	M7_p20	0.342857143	0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.27	221	0	0	NA	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr9	64212673	64212673	C	A	ENSMUST00000005066.8	1	ENSMUSG00000004936	missense	V/L	117	Map2k1	ENSMUST00000005066.8:c.349G>T	ENSMUSP00000005066.8:p.Val117Leu	H-2-Kb	8	5	7	IIRELQLL	IIRELQVL	SMM	330.933	442.323	1.337	67	0.239	423.71	939.42	2.217	1585.88	379.92	1226.1	467.5	442.3234863	330.9329418	652.7396586	480.5515695	M7_p20	0.628571429	0.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.266	67	0	0	NA	9qC	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr9	76493030	76493030	G	T	ENSMUST00000183437.7	1	ENSMUSG00000032358	missense	H/N	264	Fam83b	ENSMUST00000183437.7:c.790C>A	ENSMUSP00000139354.1:p.His264Asn	H-2-Kb	8	5	7	VQIITGNL	VQIITGHL	SMMPMBEC	281.022	451.586	1.607	162	0.272	322.914	557.823	1.727	625.94	390.45	586.3	355.6	529.3464441	290.2284617	451.5855118	281.0217928	M7_p20	0.671428571	0.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.278	162	0	0	NA	9qD	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr9	39873961	39873961	TA	T	ENSMUST00000215303.2	2	ENSMUSG00000094449	FS	K/X	229	Olfr972	ENSMUST00000215303.2:c.687del	ENSMUSP00000150389.1:p.Lys229AsnfsTer57	H-2-Kb	8	55	0	CPLYFIPL	NA	SMM	129.939	NA	NA	344	0.259	300.671	NA	NA	NA	688.28	NA	422.8	NA	129.9391436	NA	178.5418375	M7_p20	1.485714286	1.485714286	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.26	344	0	0	NA	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr9	31327436	31327436	T	C	ENSMUST00000074510.3	5	ENSMUSG00000042496	missense	I/T	159	Prdm10	ENSMUST00000074510.3:c.476T>C	ENSMUSP00000074104.3:p.Ile159Thr	H-2-Kb	8	8	4	VLYTDRFL	VLYIDRFL	SMMPMBEC	165.097	182.701	1.107	72	0.292	351.288	303.271	0.863	810.78	784.8	421.3	528.5	185.2422298	174.0764414	182.7006111	165.0973111	M7_p20	0.057142857	0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.319	72	0	0	NA	9qA4	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr9	59868201	59868201	A	G	ENSMUST00000136740.7	5	ENSMUSG00000039585	missense	R/G	1032	Myo9a	ENSMUST00000136740.7:c.3094A>G	ENSMUSP00000122852.1:p.Arg1032Gly	H-2-Kb	8	6	6	LQRWFGVL	LQRWFRVL	SMM	342.563	319.698	0.933	264	0.22	377.767	367.717	0.973	710.56	858.71	375.9	396	319.6980594	342.5626424	359.5340277	359.5340277	M7_p20	0.214285714	0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.218	264	0	0	NA	9qB	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr9	31426949	31426949	T	C	ENSMUST00000048050.8	1	ENSMUSG00000041737	missense	T/A	245	Tmem45b	ENSMUST00000048050.8:c.733A>G	ENSMUSP00000042313.7:p.Thr245Ala	H-2-Kb	9	5	7	LVYCFLARV	LVYCFLTRV	NetMHC	14.04	29.65	2.112	146	0.267	37.647	48.836	1.297	29.65	14.04	37.4	30.2	60.27122243	45.09309038	66.41252616	48.78092149	M7_p20	1.328571429	2.514285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.26	146	0	0	NA	9qA4	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr9	37898061	37898061	T	C	ENSMUST00000086062.3	NA	ENSMUSG00000066748	missense	L/P	219	Olfr145	ENSMUST00000086062.3:c.656T>C	ENSMUSP00000083229.2:p.Leu219Pro	H-2-Kb	9	4	8	TIFISYAPI	TIFISYALI	NetMHC	19.03	40.79	2.143	206	0.189	44.365	68.062	1.534	40.79	19.03	39.9	20.3	111.4576803	87.5205423	95.33447955	68.43054518	M7_p20	1.414285714	1.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.194	206	0	0	NA	9qA4	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.906484418	sgMsh2	cell line
chr9	38877830	38877830	T	C	ENSMUST00000078289.2	NA	ENSMUSG00000064333	missense	I/T	218	Olfr926	ENSMUST00000078289.2:c.653T>C	ENSMUSP00000077405.2:p.Ile218Thr	H-2-Kb	9	4	8	VIISYAFTL	VIISYAFIL	NetMHCpan	24.7	68.8	2.785	506	0.223	81.467	135.846	1.668	144.31	48.88	68.8	24.7	127.382568	114.0538632	210.9842323	178.7516256	M7_p20	1.442857143	2.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.232	506	0	0	NA	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr9	45946813	45946813	AT	A	ENSMUST00000114573.8	1	ENSMUSG00000034908	FS	N/X	364	Sidt2	ENSMUST00000114573.8:c.1091del	ENSMUSP00000110220.2:p.Asn364MetfsTer60	H-2-Kb	9	50	0	CALPWTAPL	NA	NetMHC	84.42	NA	NA	63	0.159	175.812	NA	NA	NA	84.42	NA	95.7	NA	255.9234019	NA	369.1900603	M7_p20	0.657142857	0.957142857	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.172	63	0	0	NA	9qA5.2	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.803687216	sgMsh2	cell line
chr9	39795557	39795557	CT	C	ENSMUST00000213266.1	2	ENSMUSG00000094254	FS	F/X	61	Olfr969	ENSMUST00000213266.1:c.186del	ENSMUSP00000149551.1:p.Leu63SerfsTer21	H-2-Kb	9	7	7	TPMYFFSAV	TPMYFFLSS	NetMHC	139.15	5874.91	42.22	401	0.264	398.204	2540.476	6.38	5874.91	139.15	2912	226.1	1349.304597	570.3087043	2168.952295	671.8154697	M7_p20	1.628571429	1.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.267	401	0	0	NA	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr9	58908457	58908457	T	C	ENSMUST00000068664.6	1	ENSMUSG00000032340	missense	N/S	845	Neo1	ENSMUST00000068664.6:c.2534A>G	ENSMUSP00000063656.5:p.Asn845Ser	H-2-Kb	9	4	8	ITLKAFNSV	ITLKAFNNV	NetMHCpan	158.6	92	0.58	179	0.223	352.943	280.466	0.795	48.67	159.99	92	158.6	468.9321403	545.8961105	537.3410257	604.2963902	M7_p20	0.628571429	0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.213	179	0	0	NA	9qB	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.99526382	sgMsh2	cell line
chr9	44106252	44106252	A	G	ENSMUST00000034654.8	1	ENSMUSG00000034739	missense	S/G	514	Mfrp	ENSMUST00000034654.8:c.1540A>G	ENSMUSP00000034654.7:p.Ser514Gly	H-2-Kb	9	4	8	RGYKSLTGL	RGYKSLTSL	NetMHC	175.39	239.04	1.363	136	0.191	399.879	468.725	1.172	239.04	175.39	160.8	177.3	698.4092778	622.4579241	703.4771574	692.2293355	M7_p20	0.071428571	0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	136	0	0	NA	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.934520019	sgMsh2	cell line
chr9	39873961	39873961	TA	T	ENSMUST00000215303.2	2	ENSMUSG00000094449	FS	K/X	229	Olfr972	ENSMUST00000215303.2:c.687del	ENSMUSP00000150389.1:p.Lys229AsnfsTer57	H-2-Kb	9	54	0	KCPLYFIPL	NA	NetMHCpan	54.1	NA	NA	344	0.259	209.432	NA	NA	NA	181.59	NA	54.1	NA	297.2418804	NA	237.2739171	M7_p20	1.485714286	1.485714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.26	344	0	0	NA	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr9	39873961	39873961	TA	T	ENSMUST00000215303.2	2	ENSMUSG00000094449	FS	K/X	229	Olfr972	ENSMUST00000215303.2:c.687del	ENSMUSP00000150389.1:p.Lys229AsnfsTer57	H-2-Kb	9	23	0	AAHTYQLLL	NA	NetMHCpan	152.4	NA	NA	344	0.259	271.062	NA	NA	NA	184.76	NA	152.4	NA	357.3633412	NA	360.7862685	M7_p20	0.385714286	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.26	344	0	0	NA	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr9	39426542	39426542	G	T	ENSMUST00000073895.3	NA	ENSMUSG00000058856	missense	H/Q	176	Olfr952	ENSMUST00000073895.3:c.528C>A	ENSMUSP00000073558.3:p.His176Gln	H-2-Kb	9	9	3	INQYFCDLF	INHYFCDLF	NetMHC	190.01	129.13	0.68	123	0.138	485.909	238.502	0.491	129.13	190.01	365.4	979.6	223.9288243	455.1033161	253.0754397	516.713728	M7_p20	0.514285714	0.514285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;MuSe;Vardict	3	0.135	123	0	0	NA	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.630801013	sgMsh2	cell line
chr9	39772552	39772552	C	T	ENSMUST00000216458.2	5	ENSMUSG00000095903	missense	V/M	83	Olfr968	ENSMUST00000216458.2:c.247G>A	ENSMUSP00000148969.1:p.Val83Met	H-2-Kb	9	11	1	MNFVTVQNI	VNFVTVQNI	NetMHCpan	157.2	68.9	0.438	681	0.25	430.956	163.893	0.38	68.56	198	68.9	157.2	258.8868552	663.9112074	356.6563823	923.1026548	M7_p20	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.251	681	0	0	NA	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr9	45946813	45946813	AT	A	ENSMUST00000114573.8	1	ENSMUSG00000034908	FS	N/X	364	Sidt2	ENSMUST00000114573.8:c.1091del	ENSMUSP00000110220.2:p.Asn364MetfsTer60	H-2-Kb	9	4	8	YNYGSFEMV	YNYGSFENG	NetMHC	200.42	5451.64	27.201	63	0.159	272.413	2696.233	9.898	5451.64	200.42	4325.6	270.6	1066.866308	274.2268658	938.1018664	289.2344371	M7_p20	0.414285714	0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.172	63	0	0	NA	9qA5.2	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.803687216	sgMsh2	cell line
chr9	24658629	24658629	T	C	ENSMUST00000133010.3	1	ENSMUSG00000085576	missense	M/V	343	Dpy19l2	ENSMUST00000133010.3:c.1027A>G	ENSMUSP00000132092.1:p.Met343Val	H-2-Kb	9	5	7	VHKKHYVAL	VHKKHYMAL	SMMPMBEC	109.207	121.689	1.114	167	0.257	179.831	135.848	0.755	102.83	201.86	214.2	272.1	150.006473	157.8010905	121.6886295	109.2068801	M7_p20	-0.357142857	-0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.264	167	0	0	NA	9qA4	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr9	37898061	37898061	T	C	ENSMUST00000086062.3	NA	ENSMUSG00000066748	missense	L/P	219	Olfr145	ENSMUST00000086062.3:c.656T>C	ENSMUSP00000083229.2:p.Leu219Pro	H-2-Kb	9	5	7	IFISYAPIL	IFISYALIL	NetMHCpan	118.3	236.4	1.998	206	0.189	232.059	330.28	1.423	451.36	235.5	236.4	118.3	274.859024	228.6177783	385.7003207	331.3217908	M7_p20	1.557142857	1.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.194	206	0	0	NA	9qA4	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.906484418	sgMsh2	cell line
chr9	38848375	38848375	A	G	ENSMUST00000217350.1	5	ENSMUSG00000062103	missense	N/S	87	Olfr924	ENSMUST00000217350.1:c.260A>G	ENSMUSP00000149849.1:p.Asn87Ser	H-2-Kb	9	11	1	STISFLECM	NTISFLECM	NetMHCpan	236.1	1677.4	7.105	296	0.267	284.712	1653.817	5.809	3190.97	240.49	1677.4	236.1	1419.416992	328.9349344	1630.234201	406.6773641	M7_p20	1.6	1.6	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.279	296	0	0	NA	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr9	39258136	39258136	A	C	ENSMUST00000076903.2	NA	ENSMUSG00000063380	missense	C/G	182	Olfr945	ENSMUST00000076903.2:c.544T>G	ENSMUSP00000076169.2:p.Cys182Gly	H-2-Kb	9	5	7	VINHYFGDI	VINHYFCDI	NetMHC	248.12	402.57	1.622	348	0.402	313.678	336.411	1.072	402.57	248.12	262.7	378.9	382.9217191	379.4110717	289.9011913	248.4562923	M7_p20	-0.657142857	0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.4	348	0	0	NA	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr9	73012712	73012712	A	C	ENSMUST00000085350.10	1	ENSMUSG00000034563	missense	K/N	536	Ccpg1	ENSMUST00000085350.10:c.1608A>C	ENSMUSP00000082458.4:p.Lys536Asn	H-2-Kb	9	5	7	STFRHFNDT	STFRHFKDT	NetMHC	253.98	561.83	2.212	47	0.234	303.15	536.715	1.77	561.83	253.98	511.6	324.3	642.8505207	354.0870144	460.5215948	282.000579	M7_p20	-1.4	-1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.272	47	0	0	NA	9qD	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr9	59539836	59539836	C	T	ENSMUST00000026262.7	1	ENSMUSG00000025232	missense	T/I	38	Hexa	ENSMUST00000026262.7:c.113C>T	ENSMUSP00000026262.6:p.Thr38Ile	H-2-Kb	9	4	8	QTYHRRYIL	QTYHRRYTL	SMM	132.773	118.88	0.895	63	0.254	225.195	135.595	0.602	130.49	260.61	140.7	301.6	118.8803295	132.7730709	160.7866549	189.7798067	M7_p20	-0.928571429	-0.928571429	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.244	63	0	0	NA	9qB	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr9	39258136	39258136	A	C	ENSMUST00000076903.2	NA	ENSMUSG00000063380	missense	C/G	182	Olfr945	ENSMUST00000076903.2:c.544T>G	ENSMUSP00000076169.2:p.Cys182Gly	H-2-Kb	9	6	6	INHYFGDIL	INHYFCDIL	NetMHCpan	249.4	114.5	0.459	348	0.402	350.747	161.261	0.46	107.57	280.66	114.5	249.4	208.0223508	420.8332054	225.553723	456.2995075	M7_p20	0.385714286	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.4	348	0	0	NA	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr9	39873961	39873961	TA	T	ENSMUST00000215303.2	2	ENSMUSG00000094449	FS	K/X	229	Olfr972	ENSMUST00000215303.2:c.687del	ENSMUSP00000150389.1:p.Lys229AsnfsTer57	H-2-Kb	9	5	7	ASILQINPL	ASILQIKST	NetMHCpan	248.1	11342.7	45.718	344	0.259	319.911	8922.822	27.892	15545.63	284.1	11342.7	248.1	6502.943789	355.7214058	5770.985724	411.386466	M7_p20	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;Vardict	3	0.26	344	0	0	NA	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr9	39772552	39772552	C	T	ENSMUST00000216458.2	5	ENSMUSG00000095903	missense	V/M	83	Olfr968	ENSMUST00000216458.2:c.247G>A	ENSMUSP00000148969.1:p.Val83Met	H-2-Kb	9	5	7	IIPKMLMNF	IIPKMLVNF	NetMHC	284.4	468.09	1.646	681	0.25	497.874	564.788	1.134	468.09	284.4	550	444.8	579.5754752	550.9472251	638.631006	711.6230389	M7_p20	0.2	1.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.251	681	0	0	NA	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr9	38728677	38728677	T	C	ENSMUST00000001544.11	1	ENSMUSG00000023186	missense	V/A	407	Vwa5a	ENSMUST00000001544.11:c.1220T>C	ENSMUSP00000001544.5:p.Val407Ala	H-2-Kb	9	5	7	FSVIREAKL	FSVIREVKL	SMMPMBEC	225.035	304.965	1.355	221	0.253	311.161	550.888	1.77	617.48	286.5	1285.3	628	484.2950164	335.8226621	304.9650004	225.0349638	M7_p20	0.342857143	0.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.27	221	0	0	NA	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr9	38877830	38877830	T	C	ENSMUST00000078289.2	NA	ENSMUSG00000064333	missense	I/T	218	Olfr926	ENSMUST00000078289.2:c.653T>C	ENSMUSP00000077405.2:p.Ile218Thr	H-2-Kb	9	6	6	ISYAFTLTS	ISYAFILTS	SMM	114.844	113.792	0.991	506	0.223	154.609	145.943	0.944	348.34	311.88	116.8	119	113.7915466	114.8444468	175.0854271	190.2172944	M7_p20	0.7	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.232	506	0	0	NA	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr9	39426542	39426542	G	T	ENSMUST00000073895.3	NA	ENSMUSG00000058856	missense	H/Q	176	Olfr952	ENSMUST00000073895.3:c.528C>A	ENSMUSP00000073558.3:p.His176Gln	H-2-Kb	9	8	4	KINQYFCDL	KINHYFCDL	NetMHCpan	305.8	312.7	1.023	123	0.138	468.801	471.489	1.006	457.41	357.84	312.7	305.8	590.3505878	711.3936757	485.5679351	579.7623384	M7_p20	-0.385714286	-0.285714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;MuSe;Vardict	3	0.135	123	0	0	NA	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.630801013	sgMsh2	cell line
chr9	39772552	39772552	C	T	ENSMUST00000216458.2	5	ENSMUSG00000095903	missense	V/M	83	Olfr968	ENSMUST00000216458.2:c.247G>A	ENSMUSP00000148969.1:p.Val83Met	H-2-Kb	9	8	4	KMLMNFVTV	KMLVNFVTV	NetMHCpan	295.6	432.9	1.464	681	0.25	403.171	410.574	1.018	382.76	358.37	432.9	295.6	388.2486909	457.2039776	469.0833305	447.9711029	M7_p20	1.814285714	1.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.251	681	0	0	NA	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr9	38877830	38877830	T	C	ENSMUST00000078289.2	NA	ENSMUSG00000064333	missense	I/T	218	Olfr926	ENSMUST00000078289.2:c.653T>C	ENSMUSP00000077405.2:p.Ile218Thr	H-2-Kb	9	8	4	YAFTLTSIL	YAFILTSIL	NetMHCpan	225.9	241.6	1.069	506	0.223	371.69	335.393	0.902	407.04	376.85	241.6	225.9	314.1304236	366.5303993	356.6563823	417.1094219	M7_p20	1.814285714	1.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.232	506	0	0	NA	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr9	58255017	58255017	A	G	ENSMUST00000034883.6	1	ENSMUSG00000032333	missense	I/V	73	Stoml1	ENSMUST00000034883.6:c.217A>G	ENSMUSP00000034883.5:p.Ile73Val	H-2-Kb	9	11	1	VSGWFALKI	ISGWFALKI	NetMHCpan	296.6	290.8	0.98	54	0.185	412.576	531.145	1.287	471.75	379.24	290.8	296.6	778.2336405	528.5791156	590.540925	445.9128626	M7_p20	1.1	1.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.242	54	0	0	NA	9qB	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr9	42566354	42566354	T	C	ENSMUST00000114865.7	1	ENSMUSG00000032017	missense	D/G	512	Grik4	ENSMUST00000114865.7:c.1535A>G	ENSMUSP00000110515.1:p.Asp512Gly	H-2-Kb	9	8	4	KVIGFSKPF	KVIDFSKPF	NetMHC	395.99	294.01	0.742	239	0.105	472.527	402.655	0.852	294.01	395.99	306.3	477.2	499.0108631	467.8536263	736.6310144	705.0988397	M7_p20	0.485714286	0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.099	239	0	0	NA	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.462587409	sgMsh2	cell line
chr9	56886067	56886067	A	T	ENSMUST00000035661.6	1	ENSMUSG00000032911	missense	N/I	362	Cspg4	ENSMUST00000035661.6:c.1085A>T	ENSMUSP00000038909.5:p.Asn362Ile	H-2-Kb	9	9	3	SVIGRRQGL	SVNGRRQGL	SMM	279.969	612.506	2.188	42	0.167	415.245	1673.187	4.029	2647.74	512.62	4801.6	977.9	612.5055101	279.9690348	698.6344547	317.8703353	M7_p20	-0.714285714	-0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.214	42	0	0	NA	9qB	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.99993642	sgMsh2	cell line
chr9	27319526	27319526	A	G	ENSMUST00000133213.2	5	ENSMUSG00000034275	missense	D/G	275	Igsf9b	ENSMUST00000133213.2:c.824A>G	ENSMUSP00000117017.1:p.Asp275Gly	H-2-Kb	9	6	6	VYFQNGLKL	VYFQNDLKL	NetMHCpan	424.6	721.3	1.699	194	0.201	494.857	455.569	0.921	479.51	521.71	721.3	424.6	431.6283877	635.4918716	329.7995054	468.0044688	M7_p20	-0.128571429	0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.215	194	0	0	NA	9qA4	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr9	38976449	38976449	A	G	ENSMUST00000216238.2	2	ENSMUSG00000058515	missense	M/V	258	Olfr933	ENSMUST00000216238.2:c.772A>G	ENSMUSP00000149292.2:p.Met258Val	H-2-Kb	9	8	4	ITFVYFKPP	ITFMYFKPP	SMM	70.163	82.625	1.178	192	0.198	165.228	121.626	0.736	469.99	525.32	139.2	221.5	82.62471986	70.16329886	104.0518964	108.9557112	M7_p20	0.2	1.2	FALSE	FALSE	TRUE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.216	192	0	0	NA	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr9	38877830	38877830	T	C	ENSMUST00000078289.2	NA	ENSMUSG00000064333	missense	I/T	218	Olfr926	ENSMUST00000078289.2:c.653T>C	ENSMUSP00000077405.2:p.Ile218Thr	H-2-Kb	10	6	6	ISYAFTLTSI	ISYAFILTSI	NetMHCpan	22.8	25.1	1.101	506	0.223	444.623	466.58	1.049	45.33	40.34	25.1	22.8	887.8303764	883.7511664	893.0175625	848.9067757	M7_p20	1.528571429	1.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.232	506	0	0	NA	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr9	121584218	121584218	A	G	ENSMUST00000077706.9	1	ENSMUSG00000032530	missense	V/A	48	Lyzl4	ENSMUST00000077706.9:c.143T>C	ENSMUSP00000076887.3:p.Val48Ala	H-2-Db	9	5	7	YSLENWACL	YSLENWVCL	NetMHC	4.23	4.14	0.979	57	0.193	20.373	25.454	1.249	4.14	4.23	7.4	6.5	43.61340556	34.2468002	43.50808817	36.52329911	M7_p20	0.571428571	0.571428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.23	57	0	0	NA	9qF4	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr9	80136750	80136750	GA	G	ENSMUST00000165607.8	1	ENSMUSG00000034252	FS	K/X	888	Senp6	ENSMUST00000165607.8:c.2672del	ENSMUSP00000126777.2:p.Asn891IlefsTer44	H-2-Db	9	42	0	ASGMNASVL	NA	NetMHC	36.8	NA	NA	92	0.315	141.593	NA	NA	NA	36.8	NA	75.9	NA	216.0827011	NA	207.2860138	M7_p20	1	1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.325	92	0	0	NA	9qE1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chrX	7608995	7608995	A	G	ENSMUST00000115726.8	1	ENSMUSG00000031142	missense	N/D	79	Cacna1f	ENSMUST00000115726.8:c.235A>G	ENSMUSP00000111391.2:p.Asn79Asp	H-2-Db	9	5	7	FCLTLTDPI	FCLTLTNPI	NetMHC	130.16	342.27	2.63	51	0.51	346.437	859.125	2.48	342.27	130.16	1129.2	442.2	898.7108813	350.4451065	819.5397067	342.4285761	M7_p20	0.8	1.142857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.5	51	0	0	NA	XqA1.1	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	sgMsh2	cell line
chr9	123002099	123002099	GA	G	ENSMUST00000040717.6	1	ENSMUSG00000036768	FS	E/X	974	Kif15	ENSMUST00000040717.6:c.2924del	ENSMUSP00000035490.5:p.Lys975SerfsTer14	H-2-Db	9	8	5	SSLESLESL	NA	NetMHCpan	320	NA	NA	81	0.346	454.677	NA	NA	NA	392.2	NA	320	NA	517.1541332	NA	561.7848201	M7_p20	0.4	0.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.327	81	0	0	NA	9qF4	chr9-121937817-124127055	3	2	1	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chrX	106931045	106931045	A	C	ENSMUST00000060576.7	1	ENSMUSG00000049929	missense	Q/H	278	Lpar4	ENSMUST00000060576.7:c.834A>C	ENSMUSP00000053986.7:p.Gln278His	H-2-Db	9	5	7	YALVRSHAI	YALVRSQAI	NetMHCpan	195.7	333	1.702	223	0.552	348.006	505.058	1.451	923.21	413.56	333	195.7	459.8540333	295.542539	550.2626052	400.4700113	M7_p20	0.828571429	0.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.552	223	0	0	NA	XqD	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	sgMsh2	cell line
chr9	91364112	91364112	GA	G	ENSMUST00000034927.12	1	ENSMUSG00000032368	FS	F/X	302	Zic1	ENSMUST00000034927.12:c.906del	ENSMUSP00000034927.6:p.Cys304AlafsTer78	H-2-Kb	8	17	0	AAARFSRV	NA	NetMHC	63.39	NA	NA	140	0.279	159.488	NA	NA	NA	63.39	NA	145.3	NA	173.6760767	NA	202.6469166	M7_p20	0.114285714	0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.279	140	0	0	NA	9qE3.2	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr9	91364112	91364112	GA	G	ENSMUST00000034927.12	1	ENSMUSG00000032368	FS	F/X	302	Zic1	ENSMUST00000034927.12:c.906del	ENSMUSP00000034927.6:p.Cys304AlafsTer78	H-2-Kb	8	68	0	TSPTFARC	NA	NetMHC	99.41	NA	NA	140	0.279	112.143	NA	NA	NA	99.41	NA	411.3	NA	106.5957771	NA	117.6901185	M7_p20	-0.071428571	-0.071428571	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.279	140	0	0	NA	9qE3.2	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr9	103343982	103343982	T	C	ENSMUST00000035164.9	1	ENSMUSG00000032555	missense	S/P	1269	Topbp1	ENSMUST00000035164.9:c.3805T>C	ENSMUSP00000035164.3:p.Ser1269Pro	H-2-Kb	8	6	6	YVFQMPSL	YVFQMSSL	NetMHCpan	89.7	53.6	0.598	73	0.219	134.991	77.001	0.57	65.95	140.12	53.6	89.7	95.66211974	137.3219621	88.05215715	132.6600022	M7_p20	0.971428571	0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.255	73	0	0	NA	9qF1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chrX	106930585	106930585	G	A	ENSMUST00000060576.7	1	ENSMUSG00000049929	missense	S/N	125	Lpar4	ENSMUST00000060576.7:c.374G>A	ENSMUSP00000053986.7:p.Ser125Asn	H-2-Kb	8	5	7	LTNIYGNM	LTNIYGSM	SMMPMBEC	202.647	463.17	2.286	144	0.493	240.886	656.883	2.727	1047.53	265.63	783.2	426.7	530.5667136	216.1424152	463.16955	202.6469166	M7_p20	-0.428571429	-0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.506	144	0	0	NA	XqD	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	sgMsh2	cell line
chr9	95461431	95461432	TTA	T	ENSMUST00000079659.11	1	ENSMUSG00000032407	FS	HK/QX	1021-1022	U2surp	ENSMUST00000079659.11:c.3063_3064del	ENSMUSP00000078602.5:p.His1021GlnfsTer28	H-2-Kb	8	19	0	LTYISKML	NA	NetMHCpan	196	NA	NA	68	0.397	293.304	NA	NA	NA	289.62	NA	196	NA	296.9887511	NA	302.5101842	M7_p20	0.5	0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.365	68	0	0	NA	9qE3.3	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr9	78470640	78470640	A	C	ENSMUST00000034896.12	1	ENSMUSG00000032342	missense	E/A	588	Mto1	ENSMUST00000034896.12:c.1763A>C	ENSMUSP00000034896.6:p.Glu588Ala	H-2-Kb	8	11	1	ASVLSYQL	ESVLSYQL	NetMHCpan	407.8	5158.6	12.65	279	0.072	482.737	4163.135	8.624	7714.58	471.46	5158.6	407.8	3167.670499	499.7352678	2646.91503	494.0148455	M7_p20	0.771428571	0.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.07	279	0	0	NA	9qE1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.327082006	sgMsh2	cell line
chrX	100718024	100718024	A	G	ENSMUST00000048962.3	1	ENSMUSG00000034311	missense	I/V	1023	Kif4	ENSMUST00000048962.3:c.3067A>G	ENSMUSP00000048383.3:p.Ile1023Val	H-2-Kb	8	6	6	SSFEYVPP	SSFEYIPP	SMM	40.808	44.539	1.091	64	0.422	241.944	254.05	1.05	558.63	512.37	451.9	435.5	44.53895263	40.80750101	56.20047679	48.38825938	M7_p20	-0.257142857	-0.142857143	FALSE	FALSE	TRUE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.436	64	0	0	NA	XqC3	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	sgMsh2	cell line
chr9	106978609	106978609	T	C	ENSMUST00000044532.10	2	ENSMUSG00000039716	missense	T/A	784	Dock3	ENSMUST00000044532.10:c.2350A>G	ENSMUSP00000047652.4:p.Thr784Ala	H-2-Kb	8	8	4	LLFAQAAL	LLFTQAAL	SMM	167.009	163.584	0.979	160	0.244	288.366	242.888	0.842	430.98	530.1	312.1	386.3	163.5836898	167.0090478	173.6760767	190.4320313	M7_p20	1.757142857	1.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.263	160	0	0	NA	9qF1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr9	88462325	88462325	A	C	ENSMUST00000173801.7	1	ENSMUSG00000032423	missense	S/A	357	Syncrip	ENSMUST00000173801.7:c.1069T>G	ENSMUSP00000133649.1:p.Ser357Ala	H-2-Kb	8	11	1	AFSQFGKL	SFSQFGKL	SMMPMBEC	369.607	220.668	0.597	159	0.283	407.456	223.384	0.548	300.77	710.31	226.1	443.6	198.0341096	371.3128679	220.6683258	369.6068402	M7_p20	0.114285714	0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.302	159	0	0	NA	9qE3.1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chrX	20644940	20644940	A	T	ENSMUST00000115374.7	1	ENSMUSG00000031060	missense	Q/L	267	Rbm10	ENSMUST00000115374.7:c.800A>T	ENSMUSP00000111032.1:p.Gln267Leu	H-2-Kb	8	9	3	LSLGLLPL	LSQGLLPL	SMMPMBEC	348.931	945.671	2.71	39	0.538	402.308	1359.735	3.38	2509.64	710.55	1773.8	422.9	913.5661511	381.7156799	945.6708451	348.9313575	M7_p20	1.771428571	1.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.5	39	0	0	NA	XqA1.3	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	sgMsh2	cell line
chr9	105418083	105418083	CA	C	ENSMUST00000085133.12	1	ENSMUSG00000032570	FS	F/X	851	Atp2c1	ENSMUST00000085133.12:c.2553del	ENSMUSP00000082220.6:p.Phe851LeufsTer7	H-2-Kb	8	4	8	TFTCFVFL	TFTCFVFF	SMM	146.467	2380.894	16.255	238	0.214	393.785	3114.872	7.91	4770.82	1201.85	3759.5	590.9	2380.893668	146.4670721	2470.244836	196.6708524	M7_p20	2.6	2.6	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.221	238	0	0	NA	9qF1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr9	88462325	88462325	A	C	ENSMUST00000173801.7	1	ENSMUSG00000032423	missense	S/A	357	Syncrip	ENSMUST00000173801.7:c.1069T>G	ENSMUSP00000133649.1:p.Ser357Ala	H-2-Kb	9	10	2	KAFSQFGKL	KSFSQFGKL	NetMHCpan	27.2	18.8	0.691	159	0.283	109.621	81.932	0.747	30.17	57.02	18.8	27.2	133.6934098	162.2220929	138.1179106	173.8801475	M7_p20	0.114285714	0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.302	159	0	0	NA	9qE3.1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr9	105418083	105418083	CA	C	ENSMUST00000085133.12	1	ENSMUSG00000032570	FS	F/X	851	Atp2c1	ENSMUST00000085133.12:c.2553del	ENSMUSP00000082220.6:p.Phe851LeufsTer7	H-2-Kb	9	3	9	MTFTCFVFL	MTFTCFVFF	NetMHC	62.13	426.85	6.87	238	0.214	106.964	362.117	3.385	426.85	62.13	405	69.3	319.2346324	189.282298	250.1785091	144.6272072	M7_p20	2.6	2.6	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.221	238	0	0	NA	9qF1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr9	91364112	91364112	GA	G	ENSMUST00000034927.12	1	ENSMUSG00000032368	FS	F/X	302	Zic1	ENSMUST00000034927.12:c.906del	ENSMUSP00000034927.6:p.Cys304AlafsTer78	H-2-Kb	9	16	0	LAAARFSRV	NA	NetMHC	139.71	NA	NA	140	0.279	245.072	NA	NA	NA	139.71	NA	284.4	NA	250.6744092	NA	239.4693856	M7_p20	0.114285714	0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.279	140	0	0	NA	9qE3.2	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr9	91364112	91364112	GA	G	ENSMUST00000034927.12	1	ENSMUSG00000032368	FS	F/X	302	Zic1	ENSMUST00000034927.12:c.906del	ENSMUSP00000034927.6:p.Cys304AlafsTer78	H-2-Kb	9	77	0	ISPTRTPAL	NA	NetMHCpan	77.4	NA	NA	140	0.279	189.365	NA	NA	NA	156.27	NA	77.4	NA	244.4049514	NA	222.4590099	M7_p20	-0.5	-0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.279	140	0	0	NA	9qE3.2	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chr9	121584218	121584218	A	G	ENSMUST00000077706.9	1	ENSMUSG00000032530	missense	V/A	48	Lyzl4	ENSMUST00000077706.9:c.143T>C	ENSMUSP00000076887.3:p.Val48Ala	H-2-Kb	9	5	7	YSLENWACL	YSLENWVCL	NetMHC	204.42	682.63	3.339	57	0.193	432.117	688.915	1.594	682.63	204.42	1098.8	509.6	695.2003787	482.0698829	517.9048762	382.1641989	M7_p20	0.571428571	0.571428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.23	57	0	0	NA	9qF4	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chrX	48263598	48263598	T	A	ENSMUST00000080713.4	1	ENSMUSG00000063785	missense	F/Y	168	Utp14a	ENSMUST00000080713.4:c.503T>A	ENSMUSP00000079538.4:p.Phe168Tyr	H-2-Kb	9	9	3	SSYAPMEHV	SSFAPMEHV	NetMHC	205.1	379.33	1.849	61	0.574	345.153	552.142	1.6	379.33	205.1	420.2	264.6	684.0848933	425.7062242	755.5270188	499.1717511	M7_p20	-0.242857143	-0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.579	61	0	0	NA	XqA5	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	sgMsh2	cell line
chr9	80136750	80136750	GA	G	ENSMUST00000165607.8	1	ENSMUSG00000034252	FS	K/X	888	Senp6	ENSMUST00000165607.8:c.2672del	ENSMUSP00000126777.2:p.Asn891IlefsTer44	H-2-Kb	9	47	0	ASVLYIIQM	NA	NetMHC	227.71	NA	NA	92	0.315	259.534	NA	NA	NA	227.71	NA	259.5	NA	350.0338139	NA	259.5673122	M7_p20	2.014285714	2.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.325	92	0	0	NA	9qE1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr9	87707833	87707833	A	T	ENSMUST00000034991.7	1	ENSMUSG00000032419	missense	Y/N	351	Tbx18	ENSMUST00000034991.7:c.1051T>A	ENSMUSP00000034991.7:p.Tyr351Asn	H-2-Kb	9	10	2	SNAFWRPSL	SYAFWRPSL	NetMHCpan	127.5	399.5	3.133	114	0.132	289.697	603.78	2.084	646.37	260.16	399.5	127.5	561.1900987	319.2346324	673.3641643	385.7003207	M7_p20	0.085714286	0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.138	114	0	0	NA	9qE3.1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.644818813	sgMsh2	cell line
chr9	95461431	95461432	TTA	T	ENSMUST00000079659.11	1	ENSMUSG00000032407	FS	HK/QX	1021-1022	U2surp	ENSMUST00000079659.11:c.3063_3064del	ENSMUSP00000078602.5:p.His1021GlnfsTer28	H-2-Kb	9	17	0	QTLTYISKM	NA	NetMHC	284.56	NA	NA	68	0.397	417.721	NA	NA	NA	284.56	NA	298.1	NA	586.2866429	NA	537.3410257	M7_p20	0.5	0.5	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.365	68	0	0	NA	9qE3.3	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr9	95461431	95461432	TTA	T	ENSMUST00000079659.11	1	ENSMUSG00000032407	FS	HK/QX	1021-1022	U2surp	ENSMUST00000079659.11:c.3063_3064del	ENSMUSP00000078602.5:p.His1021GlnfsTer28	H-2-Kb	9	20	0	TYISKMLSL	NA	NetMHC	321.47	NA	NA	68	0.397	428.57	NA	NA	NA	321.47	NA	410.2	NA	467.8536263	NA	446.9407979	M7_p20	1.214285714	1.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.365	68	0	0	NA	9qE3.3	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	2	1	sgMsh2	cell line
chr9	108563479	108563479	A	G	ENSMUST00000081111.13	1	ENSMUSG00000062867	missense	K/R	293	Impdh2	ENSMUST00000081111.13:c.878A>G	ENSMUSP00000079888.8:p.Lys293Arg	H-2-Kb	9	7	5	YIKERYPSL	YIKEKYPSL	SMMPMBEC	191.977	301.474	1.57	246	0.22	279.752	401.364	1.435	594.46	397.74	453.5	326.1	349.2287585	233.4049166	301.4740949	191.9773533	M7_p20	-1.685714286	-1.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.222	246	0	0	NA	9qF2	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chrX	81071088	81071088	C	A	ENSMUST00000026760.2	1	ENSMUSG00000025666	missense	L/M	52	Tmem47	ENSMUST00000026760.2:c.154C>A	ENSMUSP00000026760.2:p.Leu52Met	H-2-Kb	9	5	7	ADHQYYMSL	ADHQYYLSL	SMMPMBEC	313.509	317.87	1.014	15	0.6	368.361	475.161	1.29	1079.79	422.83	514.7	328.3	435.622196	408.4228203	317.8703353	313.5089908	M7_p20	-0.628571429	-0.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.6	15	0	0	NA	XqB	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	sgMsh2	cell line
chr9	109605393	109605393	A	G	ENSMUST00000073962.7	1	ENSMUSG00000062275	missense	Y/H	380	Fbxw24	ENSMUST00000073962.7:c.1138T>C	ENSMUSP00000073617.6:p.Tyr380His	H-2-Kb	9	7	5	QTFQHSPEM	QTFQYSPEM	SMM	203.756	163.347	0.802	284	0.243	373.176	147.323	0.395	131.3	599.65	121.8	424.8	163.3465627	203.7558094	256.0059151	321.5511003	M7_p20	-1.128571429	-1.128571429	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.267	284	0	0	NA	9qF2	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	sgMsh2	cell line
chrX	81071088	81071088	C	A	ENSMUST00000026760.2	1	ENSMUSG00000025666	missense	L/M	52	Tmem47	ENSMUST00000026760.2:c.154C>A	ENSMUSP00000026760.2:p.Leu52Met	H-2-Kb	9	3	9	VTADHQYYM	VTADHQYYL	SMM	371.629	282.56	0.76	15	0.6	488.476	327.583	0.671	499.45	963.09	241.8	472	282.5595563	371.6293451	372.6061339	504.9518876	M7_p20	-1.3	-0.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.6	15	0	0	NA	XqB	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	sgMsh2	cell line
chrX	119928431	119928431	T	A	ENSMUST00000040961.2	1	ENSMUSG00000034732	missense	Y/N	148	Pabpc5	ENSMUST00000040961.2:c.442T>A	ENSMUSP00000047756.2:p.Tyr148Asn	H-2-Db	9	9	3	YANVHFDSL	YAYVHFDSL	NetMHCpan	67.4	20	0.297	74	0.068	132.319	71.875	0.543	39.86	74.28	20	67.4	117.1170164	217.0800935	103.8891038	190.3575033	M7_p20	-0.028571429	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.081	74	0	0	NA	XqE1	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	sgMsh2	cell line
chrX	167306156	167306156	A	G	ENSMUST00000112161.7	1	ENSMUSG00000044583	missense	M/T	778	Tlr7	ENSMUST00000112161.7:c.2333T>C	ENSMUSP00000107787.1:p.Met778Thr	H-2-Db	9	4	8	NVLNNLETL	NVLNNLEML	NetMHCpan	106.4	677.9	6.371	138	0.536	138.652	575.836	4.153	938.34	167.72	677.9	106.4	433.1317299	133.2355135	473.7726652	144.0688203	M7_p20	0.028571429	0.085714286	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.517	138	0	0	NA	XqF5	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	sgMsh2	cell line
chrX	164162297	164162297	A	C	ENSMUST00000112271.9	1	ENSMUSG00000015405	missense	E/A	238	Ace2	ENSMUST00000112271.9:c.713A>C	ENSMUSP00000107890.3:p.Glu238Ala	H-2-Kb	8	6	6	IKPLYAHL	IKPLYEHL	NetMHC	12.39	253.44	20.455	151	0.49	30.114	237.309	7.88	253.44	12.39	985.6	114.2	207.8452003	29.76733808	221.1770188	30.46070846	M7_p20	-0.085714286	0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.484	151	0	0	NA	XqF5	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	sgMsh2	cell line
chrX	164162297	164162297	A	C	ENSMUST00000112271.9	1	ENSMUSG00000015405	missense	E/A	238	Ace2	ENSMUST00000112271.9:c.713A>C	ENSMUSP00000107890.3:p.Glu238Ala	H-2-Kb	8	10	2	YAHLHAYV	YEHLHAYV	NetMHC	266.02	11963.56	44.972	151	0.49	375.522	5972.718	15.905	11963.56	266.02	9671.7	307.7	2273.735801	443.3431473	2092.859144	446.4162552	M7_p20	0.557142857	0.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.484	151	0	0	NA	XqF5	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	sgMsh2	cell line
chrX	119928431	119928431	T	A	ENSMUST00000040961.2	1	ENSMUSG00000034732	missense	Y/N	148	Pabpc5	ENSMUST00000040961.2:c.442T>A	ENSMUSP00000047756.2:p.Tyr148Asn	H-2-Kb	8	10	2	ANVHFDSL	AYVHFDSL	NetMHCpan	138.4	167.7	1.212	74	0.068	240.924	677.519	2.812	364.8	312.99	167.7	138.4	1093.301641	234.8226582	990.238939	247.0244836	M7_p20	-0.028571429	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.081	74	0	0	NA	XqE1	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	sgMsh2	cell line
chrX	153392828	153392828	A	T	ENSMUST00000112574.8	1	ENSMUSG00000041649	missense	D/V	343	Klf8	ENSMUST00000112574.8:c.1028A>T	ENSMUSP00000108193.2:p.Asp343Val	H-2-Kb	9	5	7	RSFSRSVHL	RSFSRSDHL	NetMHCpan	26.9	121.5	4.517	41	0.317	59.407	161.552	2.719	166.75	32.89	121.5	26.9	156.3543614	85.92311238	215.8986864	112.2664526	M7_p20	0.214285714	0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.346	41	0	0	NA	XqF3	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	sgMsh2	cell line
chrX	135613266	135613266	C	T	ENSMUST00000113159.7	5	ENSMUSG00000031411	missense	E/K	425	Prame	ENSMUST00000113159.7:c.1273G>A	ENSMUSP00000108784.1:p.Glu425Lys	H-2-Kb	9	11	1	KQWQFHGRL	EQWQFHGRL	NetMHC	34.51	455.42	13.197	121	0.529	226.444	653.524	2.886	455.42	34.51	390.2	77.7	1300.498932	478.7513372	851.6281337	375.1889162	M7_p20	-0.842857143	-0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.506	121	0	0	NA	XqF1	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	sgMsh2	cell line
chrX	119928431	119928431	T	A	ENSMUST00000040961.2	1	ENSMUSG00000034732	missense	Y/N	148	Pabpc5	ENSMUST00000040961.2:c.442T>A	ENSMUSP00000047756.2:p.Tyr148Asn	H-2-Kb	9	9	3	YANVHFDSL	YAYVHFDSL	NetMHC	301.77	14.4	0.048	74	0.068	377.589	27.387	0.073	14.4	301.77	11.8	358.8	40.3747643	396.378418	46.3713778	414.2380608	M7_p20	-0.028571429	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.081	74	0	0	NA	XqE1	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	sgMsh2	cell line
chr1	26683454	26683454	T	A	ENSMUST00000097801.3	1	ENSMUSG00000073722	missense	T/S	882	4931408C20Rik	ENSMUST00000097801.3:c.2644A>T	ENSMUSP00000095410.3:p.Thr882Ser	H-2-Db	9	11	1	SAVELQVLI	TAVELQVLI	SMM	277.089	572.295	2.065	142	0.289	359.953	1249.888	3.472	1927.48	412.6	2926.1	1007.5	572.2950638	277.089456	515.9053125	307.3052643	M7	1.928571429	1.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe	3	0.296	142	0	0	NA	1qA5	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr1	45817269	45817269	GC	G	ENSMUST00000027139.14	1	ENSMUSG00000025995	FS	A/X	484	Wdr75	ENSMUST00000027139.14:c.1452del	ENSMUSP00000027139.8:p.Ile485LeufsTer35	H-2-Db	9	10	3	KALLGLVTL	NA	SMMPMBEC	372.881	NA	NA	89	0.247	403.5	NA	NA	NA	415.6	NA	482.5	NA	391.3992598	NA	372.8807814	M7	2.614285714	2.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.241	89	58	0	0	1qC1.1	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr1	4352795	4352795	T	C	ENSMUST00000027032.5	1	ENSMUSG00000025900	missense	M/V	11	Rp1	ENSMUST00000027032.5:c.31A>G	ENSMUSP00000027032.4:p.Met11Val	H-2-Kb	8	7	5	TSFSVIHL	TSFSMIHL	NetMHC	20.73	12.72	0.614	101	0.228	35.302	20.485	0.58	12.72	20.73	14.5	31	29.90473787	40.43337559	26.4691503	39.60408646	M7	1.5	1.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	101	0	0	NA	1qA1	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr1	120241517	120241517	A	G	ENSMUST00000112641.7	1	ENSMUSG00000026389	missense	F/S	312	Steap3	ENSMUST00000112641.7:c.935T>C	ENSMUSP00000108260.1:p.Phe312Ser	H-2-Kb	8	7	5	LSFFSAML	LSFFFAML	NetMHCpan	12.5	2.9	0.232	59	0.068	30.516	2.399	0.079	2.72	21.52	2.9	12.5	2.078452003	39.51299959	1.891211064	40.99585987	M7	1.642857143	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.069	59	0	0	NA	1qE2.3	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.314525393	sgMsh2	cell line
chr1	88088110	88088110	A	G	ENSMUST00000113139.1	5	ENSMUSG00000089675	missense	T/A	82	Ugt1a8	ENSMUST00000113139.1:c.244A>G	ENSMUSP00000108764.1:p.Thr82Ala	H-2-Kb	8	8	4	VSYALEDL	VSYTLEDL	NetMHC	30	26.52	0.884	149	0.174	55.141	50.857	0.922	26.52	30	45.9	53.3	55.81359543	56.9823033	61.76465217	67.72359439	M7	0.042857143	0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.181	149	0	0	NA	1qD	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.825059363	sgMsh2	cell line
chr1	55078678	55078678	T	A	ENSMUST00000027123.14	1	ENSMUSG00000025980	missense	I/F	474	Hspd1	ENSMUST00000027123.14:c.1420A>T	ENSMUSP00000027123.8:p.Ile474Phe	H-2-Kb	8	7	5	RALKFPAM	RALKIPAM	NetMHC	57.84	5027.16	86.915	82	0.171	145.525	5762.283	39.597	5027.16	57.84	1724.8	71.9	6914.16915	219.1492557	6497.405923	259.8603386	M7	0.942857143	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe	3	0.184	82	228	86	0.377192982	1qC1.2	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.83873438	sgMsh2	cell line
chr1	91168804	91168804	A	C	ENSMUST00000094698.1	1	ENSMUSG00000070732	missense	K/Q	962	Rbm44	ENSMUST00000094698.1:c.2884A>C	ENSMUSP00000092286.1:p.Lys962Gln	H-2-Kb	8	9	3	IMQRLAEL	IMKRLAEL	NetMHC	71.68	346.73	4.837	123	0.098	173.92	376.465	2.165	346.73	71.68	245.3	141.9	488.3599043	205.9396641	406.2000757	222.7101447	M7	-0.028571429	0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.081	123	0	0	NA	1qD	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.369225461	sgMsh2	cell line
chr1	135167045	135167045	T	C	ENSMUST00000027682.8	1	ENSMUSG00000026424	missense	I/V	154	Gpr37l1	ENSMUST00000027682.8:c.460A>G	ENSMUSP00000027682.8:p.Ile154Val	H-2-Kb	8	11	1	VVWHSYYL	IVWHSYYL	NetMHCpan	50.2	54.3	1.082	124	0.177	124.72	127.484	1.022	148.38	135.33	54.3	50.2	137.0061303	128.4517425	117.9614222	120.9873599	M7	0.071428571	0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.195	124	0	0	NA	1qE4	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.88887611	sgMsh2	cell line
chr1	116060165	116060165	A	G	ENSMUST00000043725.8	2	ENSMUSG00000070695	missense	K/R	142	Cntnap5a	ENSMUST00000043725.8:c.425A>G	ENSMUSP00000035732.8:p.Lys142Arg	H-2-Kb	8	6	6	SVVHHRLL	SVVHHKLL	SMM	427.307	882.551	2.065	186	0.242	446.527	895.276	2.005	1341.14	508.89	908	456.8	882.5513833	427.3069928	801.1982647	436.2545806	M7	0.728571429	0.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.234	186	0	0	NA	1qE2.3	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr1	88266615	88266615	T	C	ENSMUST00000127446.1	1	ENSMUSG00000044783	missense	K/R	39	Hjurp	ENSMUST00000127446.1:c.116A>G	ENSMUSP00000118659.1:p.Lys39Arg	H-2-Kb	8	10	2	LRYLLCPL	LKYLLCPL	SMMPMBEC	254.531	174.478	0.685	338	0.062	415.298	339.24	0.817	519.01	550.22	498.7	566.9	179.7794304	280.3754606	174.4777291	254.5305993	M7	0.928571429	0.928571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.062	338	104	4	0.038461538	1qD	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.282617019	sgMsh2	cell line
chr1	119527237	119527237	T	C	ENSMUST00000183952.1	NA	ENSMUSG00000098923	missense	Y/H	243	Tmem185b	ENSMUST00000183952.1:c.727T>C	ENSMUSP00000139021.1:p.Tyr243His	H-2-Kb	8	11	1	HISIFIPL	YISIFIPL	SMMPMBEC	277.805	143.463	0.516	157	0.49	366.678	142.732	0.389	159.19	639.82	142	423.8	132.0504848	309.5565516	143.4630303	277.8049629	M7	2.528571429	2.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.504	157	44	20	0.454545455	1qE2.3	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	2	1	sgMsh2	cell line
chr1	16369825	16369825	AT	A	ENSMUST00000162751.7	1	ENSMUSG00000025920	FS	N/X	364	Stau2	ENSMUST00000162751.7:c.1091del	ENSMUSP00000124505.1:p.Asn364MetfsTer67	H-2-Kb	8	42	0	VVQSLGFL	NA	SMM	288.895	NA	NA	125	0.192	454.137	NA	NA	NA	667.04	NA	566.5	NA	288.8949831	NA	341.7747702	M7	1.414285714	1.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.192	125	39	6	0.153846154	1qA3	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.875201093	sgMsh2	cell line
chr1	45817269	45817269	GC	G	ENSMUST00000027139.14	1	ENSMUSG00000025995	FS	A/X	484	Wdr75	ENSMUST00000027139.14:c.1452del	ENSMUSP00000027139.8:p.Ile485LeufsTer35	H-2-Kb	8	34	0	KMVPYWQL	NA	NetMHCpan	155.2	NA	NA	89	0.247	418.161	NA	NA	NA	807.81	NA	155.2	NA	409.0157201	NA	427.3069928	M7	0.371428571	0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.241	89	58	0	0	1qC1.1	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr1	133658840	133658840	T	G	ENSMUST00000179598.3	1	ENSMUSG00000094410	missense	N/T	253	Gm38394	ENSMUST00000179598.3:c.758A>C	ENSMUSP00000136026.1:p.Asn253Thr	H-2-Kb	9	10	2	STIVKHALI	SNIVKHALI	NetMHC	100.82	69.65	0.691	170	0.206	310.42	175.923	0.567	69.65	100.82	127.4	281.8	224.4450336	352.4601324	231.8729034	339.0392667	M7	1.671428571	1.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.225	170	146	26	0.178082192	1qE4	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr1	26687339	26687339	C	T	ENSMUST00000097801.3	1	ENSMUSG00000073722	missense	A/T	30	4931408C20Rik	ENSMUST00000097801.3:c.88G>A	ENSMUSP00000095410.3:p.Ala30Thr	H-2-Kb	9	8	4	ISFTIMCGV	ISFAIMCGV	NetMHCpan	74.6	91	1.22	399	0.025	250.461	298.272	1.191	128.54	108.05	91	74.6	533.469998	476.5516746	468.0044688	392.8710251	M7	2.114285714	2.114285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.028	399	0	0	NA	1qA5	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.127633493	sgMsh2	cell line
chr1	91168804	91168804	A	C	ENSMUST00000094698.1	1	ENSMUSG00000070732	missense	K/Q	962	Rbm44	ENSMUST00000094698.1:c.2884A>C	ENSMUSP00000092286.1:p.Lys962Gln	H-2-Kb	9	8	4	KIMQRLAEL	KIMKRLAEL	NetMHC	135.89	125.18	0.921	123	0.098	215.458	200.888	0.932	125.18	135.89	153.4	154.7	248.3762124	283.2109234	252.4933823	276.216743	M7	-0.028571429	0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.081	123	0	0	NA	1qD	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.369225461	sgMsh2	cell line
chr1	110925087	110925087	A	T	ENSMUST00000094626.4	1	ENSMUSG00000047216	missense	Y/N	373	Cdh19	ENSMUST00000094626.4:c.1117T>A	ENSMUSP00000092210.3:p.Tyr373Asn	H-2-Kb	9	5	7	VFLLPYNIL	VFLLPYYIL	SMM	98.653	114.054	1.156	134	0.194	176.295	208.175	1.181	208.26	179.11	561.9	499.8	114.0538632	98.65293264	208.0894201	173.4802343	M7	1.357142857	1.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.191	134	0	0	NA	1qE2.1	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.870642753	sgMsh2	cell line
chr1	5916369	5916369	A	G	ENSMUST00000044180.4	NA	ENSMUSG00000033774	missense	Y/H	309	Npbwr1	ENSMUST00000044180.4:c.925T>C	ENSMUSP00000046233.4:p.Tyr309His	H-2-Kb	9	6	6	LNPFLHAFL	LNPFLYAFL	NetMHCpan	98	28.5	0.291	57	0.193	405.724	118.863	0.293	40.37	181.58	28.5	98	212.3782315	743.2073569	197.3558481	629.8686601	M7	1.457142857	1.457142857	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.203	57	0	0	NA	1qA1	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.925342822	sgMsh2	cell line
chr1	123445299	123445299	A	G	ENSMUST00000112606.7	1	ENSMUSG00000036815	missense	I/T	204	Dpp10	ENSMUST00000112606.7:c.611T>C	ENSMUSP00000108225.1:p.Ile204Thr	H-2-Kb	9	3	9	LIYIFENNT	LIYIFENNI	NetMHC	184.51	25.12	0.136	103	0.388	233.18	68.152	0.292	25.12	184.51	41	757.3	95.3037523	221.8758325	112.5252535	244.4837509	M7	-0.742857143	1.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.4	103	0	0	NA	1qE2.3	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	2	1	sgMsh2	cell line
chr1	119527237	119527237	T	C	ENSMUST00000183952.1	NA	ENSMUSG00000098923	missense	Y/H	243	Tmem185b	ENSMUST00000183952.1:c.727T>C	ENSMUSP00000139021.1:p.Tyr243His	H-2-Kb	9	10	2	SHISIFIPL	SYISIFIPL	NetMHCpan	99	117	1.182	157	0.49	224.362	220.237	0.982	296.53	185.63	117	99	189.7186388	263.0934282	250.7552301	331.3217908	M7	2.528571429	2.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.504	157	44	20	0.454545455	1qE2.3	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	2	1	sgMsh2	cell line
chr1	88088110	88088110	A	G	ENSMUST00000113139.1	5	ENSMUSG00000089675	missense	T/A	82	Ugt1a8	ENSMUST00000113139.1:c.244A>G	ENSMUSP00000108764.1:p.Thr82Ala	H-2-Kb	9	4	8	KTYSVSYAL	KTYSVSYTL	NetMHCpan	171.1	184.7	1.079	149	0.174	331.488	372.748	1.124	270.04	215.15	184.7	171.1	475.4556362	447.8267173	877.5058087	815.1734005	M7	0.8	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.181	149	0	0	NA	1qD	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.825059363	sgMsh2	cell line
chr1	45817269	45817269	GC	G	ENSMUST00000027139.14	1	ENSMUSG00000025995	FS	A/X	484	Wdr75	ENSMUST00000027139.14:c.1452del	ENSMUSP00000027139.8:p.Ile485LeufsTer35	H-2-Kb	9	34	0	KMVPYWQLV	NA	NetMHC	238.19	NA	NA	89	0.247	283.842	NA	NA	NA	238.19	NA	267	NA	300.6837791	NA	352.5737704	M7	0.7	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.241	89	58	0	0	1qC1.1	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr1	62344084	62344084	A	C	ENSMUST00000075374.9	5	ENSMUSG00000052062	missense	E/A	779	Pard3b	ENSMUST00000075374.9:c.2336A>C	ENSMUSP00000074837.3:p.Glu779Ala	H-2-Kb	9	9	3	CNASFRAAI	CNESFRAAI	NetMHCpan	230.4	1751.1	7.6	41	0.146	372.631	1474.805	3.958	925.35	239.31	1751.1	230.4	1300.498932	505.9527957	1649.111423	995.9785837	M7	1.057142857	1.057142857	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.189	41	0	0	NA	1qC2	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.861526075	sgMsh2	cell line
chr1	120241517	120241517	A	G	ENSMUST00000112641.7	1	ENSMUSG00000026389	missense	F/S	312	Steap3	ENSMUST00000112641.7:c.935T>C	ENSMUSP00000108260.1:p.Phe312Ser	H-2-Kb	9	5	7	GLLSFFSAM	GLLSFFFAM	NetMHCpan	154.7	708.7	4.581	59	0.068	378.944	659.997	1.742	1236.5	382.82	708.7	154.7	458.2579416	375.0679891	611.2938126	481.1162215	M7	1.642857143	1.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.069	59	0	0	NA	1qE2.3	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.314525393	sgMsh2	cell line
chr1	16369825	16369825	AT	A	ENSMUST00000162751.7	1	ENSMUSG00000025920	FS	N/X	364	Stau2	ENSMUST00000162751.7:c.1091del	ENSMUSP00000124505.1:p.Asn364MetfsTer67	H-2-Kb	9	64	0	LMFIKRWKL	NA	SMMPMBEC	146.977	NA	NA	125	0.192	253.231	NA	NA	NA	436.85	NA	281.5	NA	224.9624328	NA	146.9772103	M7	-0.3	0.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.192	125	39	6	0.153846154	1qA3	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.875201093	sgMsh2	cell line
chr1	135167045	135167045	T	C	ENSMUST00000027682.8	1	ENSMUSG00000026424	missense	I/V	154	Gpr37l1	ENSMUST00000027682.8:c.460A>G	ENSMUSP00000027682.8:p.Ile154Val	H-2-Kb	9	10	2	CVVWHSYYL	CIVWHSYYL	SMM	366.53	378.538	1.033	124	0.177	457.755	527.6	1.153	517.1	471.51	538.1	444	378.5384504	366.5303993	726.524058	713.2634994	M7	0.071428571	0.671428571	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.195	124	0	0	NA	1qE4	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.88887611	sgMsh2	cell line
chr10	29344614	29344614	TA	T	ENSMUST00000020034.5	1	ENSMUSG00000019883	FS	L/X	278	Echdc1	ENSMUST00000020034.5:c.840del	ENSMUSP00000020034.4:p.Lys280AsnfsTer11	H-2-Db	9	9	5	RGLKNLSAL	NA	NetMHC	57	NA	NA	99	0.212	129.55	NA	NA	NA	57	NA	114.7	NA	154.0352082	NA	144.4009332	M7	0.714285714	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.211	99	116	25	0.215517241	10qA4	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.961809534	sgMsh2	cell line
chr10	5022126	5022126	T	A	ENSMUST00000215295.1	5	ENSMUSG00000096054	missense	I/F	8761	Syne1	ENSMUST00000215295.1:c.26281A>T	ENSMUSP00000150262.1:p.Ile8761Phe	H-2-Db	9	11	1	FGLTCLVPM	IGLTCLVPM	NetMHC	60.15	506.36	8.418	56	0.25	306.28	885.956	2.893	506.36	60.15	862.9	223.9	1229.192778	523.1424958	909.0128028	388.6601375	M7	1.985714286	2.285714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.255	56	26	8	0.307692308	10qA1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr10	34127600	34127600	T	C	ENSMUST00000062784.7	1	ENSMUSG00000046031	missense	T/A	104	Calhm6	ENSMUST00000062784.7:c.310A>G	ENSMUSP00000051575.6:p.Thr104Ala	H-2-Kb	8	10	2	MAAAFAPL	MTAAFAPL	NetMHC	6.89	7.12	1.033	30	0.2	13.206	10.773	0.816	7.12	6.89	12.9	11.9	9.391608928	14.51242539	12.15458122	19.21940772	M7	1.742857143	1.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.207	30	0	0	NA	10qB1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.943576178	sgMsh2	cell line
chr1	174069592	174069592	T	C	ENSMUST00000213425.1	5	ENSMUSG00000050134	missense	L/P	98	Olfr430	ENSMUST00000213425.1:c.293T>C	ENSMUSP00000150451.1:p.Leu98Pro	H-2-Kb	8	5	7	ISFAGCPL	ISFAGCLL	NetMHC	17.6	52.15	2.963	162	0.216	21.293	53.599	2.517	52.15	17.6	37	22.6	64.52678095	24.36351806	55.04780419	19.98664966	M7	1.157142857	1.257142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	162	0	0	NA	1qH3	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr10	20357669	20357669	A	C	ENSMUST00000169712.2	1	ENSMUSG00000019992	missense	N/T	328	Mtfr2	ENSMUST00000169712.2:c.983A>C	ENSMUSP00000129315.1:p.Asn328Thr	H-2-Kb	8	6	6	VSLISTAL	VSLISNAL	NetMHC	49.7	94.67	1.905	115	0.243	79.504	112.755	1.418	94.67	49.7	172.8	90.5	87.64759423	68.50779666	130.8398387	93.0550614	M7	1.657142857	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.244	115	22	6	0.272727273	10qA3	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr1	194780562	194780562	A	G	ENSMUST00000027952.11	1	ENSMUSG00000026640	missense	H/R	879	Plxna2	ENSMUST00000027952.11:c.2636A>G	ENSMUSP00000027952.5:p.His879Arg	H-2-Kb	8	8	4	VTIRGVNL	VTIHGVNL	NetMHC	74.49	317.58	4.263	112	0.223	88.972	181.985	2.045	317.58	74.49	167.3	91.3	196.6708524	105.3755853	154.0777756	86.64430052	M7	0.485714286	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.228	112	8	4	0.5	1qH6	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr1	172290712	172290712	T	A	ENSMUST00000085913.10	1	ENSMUSG00000007097	missense	I/F	132	Atp1a2	ENSMUST00000085913.10:c.394A>T	ENSMUSP00000083077.4:p.Ile132Phe	H-2-Kb	8	9	3	LGFVLAAV	LGIVLAAV	NetMHC	85.07	805.62	9.47	113	0.274	128.59	785.379	6.108	805.62	85.07	822.4	123.6	765.1384027	157.666708	633.4903447	133.5795574	M7	2.6	2.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.267	113	0	0	NA	1qH3	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr1	191058906	191058906	T	C	ENSMUST00000110893.9	1	ENSMUSG00000026632	missense	N/S	57	Tatdn3	ENSMUST00000110893.9:c.170A>G	ENSMUSP00000106518.3:p.Asn57Ser	H-2-Kb	8	11	1	SGFVLPCL	NGFVLPCL	SMMPMBEC	163.961	930.551	5.675	109	0.229	168.271	1269.873	7.547	5091.47	186.82	1466.4	167.6	1073.346637	168.9429215	930.550614	163.9607892	M7	2.157142857	2.157142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.245	109	11	2	0.181818182	1qH6	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr10	21382316	21382316	C	T	ENSMUST00000042699.13	1	ENSMUSG00000037542	missense	T/I	104	Aldh8a1	ENSMUST00000042699.13:c.311C>T	ENSMUSP00000038878.7:p.Thr104Ile	H-2-Kb	8	4	8	KTLTLARI	KTLTLART	SMMPMBEC	381.716	1249.511	3.273	69	0.275	479.453	3929.981	8.197	5879.62	507.32	7377.9	548.4	1980.341096	451.5855118	1249.510759	381.7156799	M7	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.27	69	0	0	NA	10qA3	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr1	172326225	172326225	A	G	ENSMUST00000062387.7	1	ENSMUSG00000038026	missense	F/L	111	Kcnj9	ENSMUST00000062387.7:c.331T>C	ENSMUSP00000060110.2:p.Phe111Leu	H-2-Kb	8	5	7	NGFVAALL	NGFVAAFL	NetMHCpan	297.8	326.1	1.095	67	0.209	316.555	271.37	0.857	744.66	576.99	326.1	297.8	216.6406749	326.3923717	214.1608096	306.71852	M7	2.542857143	2.542857143	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.206	67	0	0	NA	1qH3	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.939017839	sgMsh2	cell line
chr1	154398634	154398634	G	A	ENSMUST00000187541.6	1	ENSMUSG00000004110	missense	A/V	2194	Cacna1e	ENSMUST00000187541.6:c.6581C>T	ENSMUSP00000140937.1:p.Ala2194Val	H-2-Kb	8	5	7	ISEPYLVL	ISEPYLAL	SMMPMBEC	118.779	52.813	0.445	54	0.148	233.323	72.186	0.309	88.43	664.92	136.6	334.9	55.94225905	131.7467771	52.8128981	118.7790917	M7	0.657142857	0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.16	54	0	0	NA	1qG3	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.729334244	sgMsh2	cell line
chr10	34127600	34127600	T	C	ENSMUST00000062784.7	1	ENSMUSG00000046031	missense	T/A	104	Calhm6	ENSMUST00000062784.7:c.310A>G	ENSMUSP00000051575.6:p.Thr104Ala	H-2-Kb	9	9	3	SMAAAFAPL	SMTAAFAPL	NetMHC	17.68	20.57	1.163	30	0.2	69.176	101.255	1.464	20.57	17.68	48.3	32.4	154.2090991	105.9522052	210.0148478	158.2158541	M7	1.742857143	1.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.207	30	0	0	NA	10qB1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.943576178	sgMsh2	cell line
chr1	158247106	158247106	G	T	ENSMUST00000004133.10	1	ENSMUSG00000004031	missense	P/T	482	Brinp2	ENSMUST00000004133.10:c.1444C>A	ENSMUSP00000004133.8:p.Pro482Thr	H-2-Kb	9	11	1	TGYVLAQGL	PGYVLAQGL	NetMHC	57.8	2756.36	47.688	87	0.184	238.234	1947.321	8.174	2756.36	57.8	3184.7	75.5	738.0911534	400.9682638	1138.282345	484.4511598	M7	1.2	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.191	87	0	0	NA	1qH1	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.870642753	sgMsh2	cell line
chr1	174250568	174250568	A	G	ENSMUST00000214725.1	5	ENSMUSG00000050788	missense	F/L	120	Olfr419	ENSMUST00000214725.1:c.358T>C	ENSMUSP00000149512.1:p.Phe120Leu	H-2-Kb	9	9	3	MGLDRYVAI	MGFDRYVAI	NetMHCpan	176	25.6	0.145	105	0.267	267.445	86.898	0.325	67.32	239.6	25.6	176	149.3172559	418.8996524	106.4755765	295.2908568	M7	0.714285714	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.264	105	0	0	NA	1qH3	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr1	135272375	135272375	A	G	ENSMUST00000077340.13	1	ENSMUSG00000041926	missense	Y/H	281	Rnpep	ENSMUST00000077340.13:c.841T>C	ENSMUSP00000076564.7:p.Tyr281His	H-2-Kb	9	11	1	HVWGRYDLL	YVWGRYDLL	SMM	166.767	106.441	0.638	112	0.196	246.549	111.966	0.454	117.49	325.12	161.1	476	106.4412583	166.7669554	99.36878965	167.9770694	M7	-0.428571429	-0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.222	112	94	19	0.20212766	1qE4	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr10	42318676	42318676	T	C	ENSMUST00000041024.14	1	ENSMUSG00000038302	missense	I/M	373	Afg1l	ENSMUST00000041024.14:c.1119A>G	ENSMUSP00000036149.8:p.Ile373Met	H-2-Kb	9	9	3	VIMRNIPQF	VIIRNIPQF	NetMHCpan	433.6	581	1.34	123	0.065	490.558	561.656	1.145	522.22	465.59	581	433.6	654.8020042	605.4942175	542.312981	515.5253194	M7	-0.557142857	0.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.067	123	37	0	0	10qB2	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.305408715	sgMsh2	cell line
chr10	23897365	23897365	T	C	ENSMUST00000041416.7	1	ENSMUSG00000037440	missense	Y/H	97	Vnn1	ENSMUST00000041416.7:c.289T>C	ENSMUSP00000040599.7:p.Tyr97His	H-2-Kb	9	7	5	TIYPHLEEI	TIYPYLEEI	NetMHCpan	162.8	59.8	0.367	62	0.161	280.695	187.481	0.668	155.05	490.72	59.8	162.8	228.6177783	285.1740477	219.9125427	276.216743	M7	-0.685714286	-0.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.184	62	168	19	0.113095238	10qA4	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.83873438	sgMsh2	cell line
chr10	83191774	83191774	T	C	ENSMUST00000040110.7	1	ENSMUSG00000034612	missense	V/A	345	Chst11	ENSMUST00000040110.7:c.1034T>C	ENSMUSP00000045349.7:p.Val345Ala	H-2-Db	9	12	3	YSAPNYLKL	YSVPNYLKL	NetMHCpan	122.5	52.9	0.432	44	0.227	309.537	121.64	0.393	26.34	143.06	52.9	122.5	190.3794203	476.0143004	241.3070442	699.1494173	M7	-0.128571429	-0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.245	44	0	0	NA	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr10	79997840	79997840	AC	A	ENSMUST00000171637.7	1	ENSMUSG00000035722	FS	H/X	46	Abca7	ENSMUST00000171637.7:c.143del	ENSMUSP00000128121.1:p.Pro48LeufsTer30	H-2-Db	9	5	9	VAVRHSHPL	VAVRHSHPP	NetMHC	149.41	14883.63	99.616	47	0.128	252.796	7089.259	28.043	14883.63	149.41	9705.3	158.4	4473.217343	377.2419664	4391.066356	347.1922322	M7	-0.757142857	-0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.151	47	23	3	0.130434783	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.688309193	sgMsh2	cell line
chr10	57807508	57807508	T	C	ENSMUST00000020022.7	1	ENSMUSG00000019872	missense	L/P	238	Smpdl3a	ENSMUST00000020022.7:c.713T>C	ENSMUSP00000020022.7:p.Leu238Pro	H-2-Db	9	9	3	SSPWNKEKV	SSLWNKEKV	NetMHC	149.84	82.85	0.553	140	0.036	484.185	174.003	0.359	82.85	149.84	115.4	212.2	232.605511	756.1709692	244.6639596	813.8980351	M7	-1.871428571	-1.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.038	140	37	0	0	10qB4	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.173216883	sgMsh2	cell line
chr10	79997840	79997840	AC	A	ENSMUST00000171637.7	1	ENSMUSG00000035722	FS	H/X	46	Abca7	ENSMUST00000171637.7:c.143del	ENSMUSP00000128121.1:p.Pro48LeufsTer30	H-2-Db	9	14	0	WSITNATFQ	NA	SMMPMBEC	202.568	NA	NA	47	0.128	296.897	NA	NA	NA	220.01	NA	4624.1	NA	373.7833913	NA	202.5676081	M7	0.1	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.151	47	23	3	0.130434783	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.688309193	sgMsh2	cell line
chr10	80730907	80730907	A	C	ENSMUST00000020420.8	1	ENSMUSG00000020198	missense	I/M	80	Ap3d1	ENSMUST00000020420.8:c.240T>G	ENSMUSP00000020420.7:p.Ile80Met	H-2-Db	9	5	7	WAAFNIMEV	WAAFNIIEV	NetMHCpan	142.9	122.7	0.859	202	0.203	398.595	303.122	0.76	236.74	407.59	122.7	142.9	369.5047282	389.6009436	406.9771255	433.0818667	M7	1.171428571	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	202	75	12	0.16	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.911667805	sgMsh2	cell line
chr10	123163632	123163632	AT	A	ENSMUST00000220377.1	1	ENSMUSG00000020124	FS	N/X	215	Usp15	ENSMUST00000220377.1:c.644del	ENSMUSP00000151244.1:p.Asn215MetfsTer44	H-2-Db	9	36	0	RSLLHLYQI	NA	SMMPMBEC	352.834	NA	NA	156	0.212	466.615	NA	NA	NA	481.63	NA	451.6	NA	491.6091981	NA	352.8336521	M7	1.128571429	1.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.208	156	94	1	0.010638298	10qD2	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.948134517	sgMsh2	cell line
chr10	50754122	50754122	G	T	ENSMUST00000035606.9	5	ENSMUSG00000038774	missense	S/I	1769	Ascc3	ENSMUST00000035606.9:c.5306G>T	ENSMUSP00000036726.8:p.Ser1769Ile	H-2-Kb	8	8	4	MNPIYYSL	MNPSYYSL	NetMHC	10.83	12.27	1.133	148	0.25	32.613	36.465	1.118	12.27	10.83	28.9	21.7	44.02911945	43.52512229	62.62388407	64.23030732	M7	-0.028571429	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.256	148	95	18	0.189473684	10qB3	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr10	103404331	103404331	A	G	ENSMUST00000074204.11	1	ENSMUSG00000019894	missense	Q/R	305	Slc6a15	ENSMUST00000074204.11:c.914A>G	ENSMUSP00000073829.4:p.Gln305Arg	H-2-Kb	8	9	3	ATRVFFAL	ATQVFFAL	NetMHC	11.81	16.33	1.383	161	0.18	30.496	37.025	1.214	16.33	11.81	34.9	33.2	39.15074224	29.02284617	44.8476819	31.96980594	M7	1.457142857	1.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.192	161	0	0	NA	10qD1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.875201093	sgMsh2	cell line
chr10	83191774	83191774	T	C	ENSMUST00000040110.7	1	ENSMUSG00000034612	missense	V/A	345	Chst11	ENSMUST00000040110.7:c.1034T>C	ENSMUSP00000045349.7:p.Val345Ala	H-2-Kb	8	13	2	SAPNYLKL	SVPNYLKL	NetMHC	34.27	40.77	1.19	44	0.227	109.37	115.98	1.06	40.77	34.27	68	57.4	163.9607892	161.3392375	188.2521739	203.5822922	M7	-0.128571429	-0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.245	44	0	0	NA	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr10	109751457	109751457	G	T	ENSMUST00000032719.14	5	ENSMUSG00000020181	missense	S/Y	1556	Nav3	ENSMUST00000032719.14:c.4667C>A	ENSMUSP00000032719.7:p.Ser1556Tyr	H-2-Kb	8	9	3	LVYSTSSL	LVSSTSSL	NetMHCpan	80.5	5829.3	72.414	132	0.235	149.636	7355.059	49.153	10008.4	116.15	5829.3	80.5	8447.729517	238.6382195	6262.388407	183.1217795	M7	0.514285714	0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.243	132	0	0	NA	10qD1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr10	125230903	125230903	G	A	ENSMUST00000211781.1	1	ENSMUSG00000020102	missense	A/V	289	Slc16a7	ENSMUST00000211781.1:c.866C>T	ENSMUSP00000147968.1:p.Ala289Val	H-2-Kb	8	8	4	SVMVFIDM	SVMAFIDM	NetMHCpan	68.2	66.8	0.979	129	0.209	235.218	280.845	1.194	145.07	116.65	66.8	68.2	496.2951144	476.1458462	416.6198901	353.7854762	M7	2.285714286	2.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.207	129	0	0	NA	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.943576178	sgMsh2	cell line
chr10	118294131	118294131	T	A	ENSMUST00000163808.1	1	ENSMUSG00000090461	missense	T/S	123	Iltifb	ENSMUST00000163808.1:c.367A>T	ENSMUSP00000128415.1:p.Thr123Ser	H-2-Kb	8	6	6	VVPFLSKL	VVPFLTKL	NetMHCpan	58.4	63.3	1.084	168	0.036	296.216	390.733	1.319	295.35	208.07	63.3	58.4	486.1160944	384.3616066	524.4933667	427.3069928	M7	1.185714286	1.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.039	168	0	0	NA	10qD2	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.177775222	sgMsh2	cell line
chr10	93516261	93516261	C	T	ENSMUST00000129421.7	1	ENSMUSG00000020017	missense	A/V	638	Hal	ENSMUST00000129421.7:c.1913C>T	ENSMUSP00000123336.1:p.Ala638Val	H-2-Kb	8	10	2	TVFSLESL	TAFSLESL	NetMHCpan	70.3	122.4	1.741	157	0.204	221.948	218.218	0.983	206.43	231.21	122.4	70.3	236.4503711	240.2923806	230.0064421	212.686537	M7	1.357142857	1.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.22	157	4	2	0.5	10qC2	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr10	57512133	57512133	C	T	ENSMUST00000079833.5	1	ENSMUSG00000019878	missense	L/F	497	Hsf2	ENSMUST00000079833.5:c.1489C>T	ENSMUSP00000078761.4:p.Leu497Phe	H-2-Kb	8	10	2	TFFYLCEL	TLFYLCEL	NetMHCpan	111.4	155.6	1.397	121	0.19	267.258	684.998	2.563	919.06	328.13	155.6	111.4	740.8665723	252.1970487	629.1294278	282.3189304	M7	1.557142857	1.557142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.21	121	92	21	0.22826087	10qB4	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.957251195	sgMsh2	cell line
chr10	53319685	53319685	G	T	ENSMUST00000220443.1	5	ENSMUSG00000038594	missense	P/H	352	Cep85l	ENSMUST00000220443.1:c.1055C>A	ENSMUSP00000151909.1:p.Pro352His	H-2-Kb	8	7	5	QSYSHPGF	QSYSPPGF	NetMHCpan	235.6	2018.4	8.567	96	0.281	446.98	2908.15	6.506	2920.69	375.47	2018.4	235.6	2895.609548	518.4895408	3645.356443	637.88149	M7	-0.757142857	-0.757142857	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.289	96	6	1	0.166666667	10qB3	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr10	119212091	119212091	A	C	ENSMUST00000020315.12	1	ENSMUSG00000020114	missense	L/R	498	Cand1	ENSMUST00000020315.12:c.1493T>G	ENSMUSP00000020315.6:p.Leu498Arg	H-2-Kb	8	11	1	RSCLYVIL	LSCLYVIL	SMMPMBEC	124.377	127.567	1.026	117	0.197	213.576	218.745	1.024	448.19	430.63	288.3	302.2	149.1900983	124.9510759	127.5674869	124.3769779	M7	2.385714286	2.385714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.201	117	205	38	0.185365854	10qD2	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.916226144	sgMsh2	cell line
chr10	103404331	103404331	A	G	ENSMUST00000074204.11	1	ENSMUSG00000019894	missense	Q/R	305	Slc6a15	ENSMUST00000074204.11:c.914A>G	ENSMUSP00000073829.4:p.Gln305Arg	H-2-Kb	8	11	1	RVFFALGL	QVFFALGL	NetMHCpan	56.1	116.2	2.071	161	0.18	278.836	511.295	1.834	593.31	569.36	116.2	56.1	429.2793522	264.0827294	613.3946729	293.5891489	M7	2.685714286	2.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.192	161	0	0	NA	10qD1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.875201093	sgMsh2	cell line
chr10	78752673	78752673	T	A	ENSMUST00000105383.3	1	ENSMUSG00000078442	missense	K/M	101	Ccdc105	ENSMUST00000105383.3:c.302A>T	ENSMUSP00000101022.2:p.Lys101Met	H-2-Kb	9	11	1	MPPAWYARL	KPPAWYARL	NetMHC	50.07	103.1	2.059	34	0.176	416.089	633.533	1.523	103.1	50.07	200.2	117.5	1066.866308	714.6773197	1154.11743	771.3473645	M7	-0.128571429	0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.213	34	0	0	NA	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.970926212	sgMsh2	cell line
chr10	79997840	79997840	AC	A	ENSMUST00000171637.7	1	ENSMUSG00000035722	FS	H/X	46	Abca7	ENSMUST00000171637.7:c.143del	ENSMUSP00000128121.1:p.Pro48LeufsTer30	H-2-Kb	9	5	9	VAVRHSHPL	VAVRHSHPP	NetMHC	53.67	10302.53	191.961	47	0.128	106.08	5759.708	54.296	10302.53	53.67	11737.6	80.3	608.2890519	131.8590675	1216.886295	165.2913018	M7	-0.757142857	-0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.151	47	23	3	0.130434783	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.688309193	sgMsh2	cell line
chr10	77065287	77065287	AG	A	ENSMUST00000105409.7	1	ENSMUSG00000001435	FS	P/X	1031	Col18a1	ENSMUST00000105409.7:c.3092del	ENSMUSP00000101049.1:p.Pro1031LeufsTer67	H-2-Kb	9	52	0	VTKERWAHL	NA	NetMHC	74.2	NA	NA	63	0.238	89.638	NA	NA	NA	74.2	NA	103.2	NA	114.8444468	NA	76.07640819	M7	-1.485714286	-1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.25	63	461	5	0.010845987	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr10	57512133	57512133	C	T	ENSMUST00000079833.5	1	ENSMUSG00000019878	missense	L/F	497	Hsf2	ENSMUST00000079833.5:c.1489C>T	ENSMUSP00000078761.4:p.Leu497Phe	H-2-Kb	9	9	3	ATFFYLCEL	ATLFYLCEL	NetMHCpan	16	70.9	4.431	121	0.19	83.58	243.834	2.917	237.49	76.95	70.9	16	258.8868552	92.28051297	250.1785091	90.20902731	M7	1.557142857	1.671428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.21	121	92	21	0.22826087	10qB4	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.957251195	sgMsh2	cell line
chr10	80730907	80730907	A	C	ENSMUST00000020420.8	1	ENSMUSG00000020198	missense	I/M	80	Ap3d1	ENSMUST00000020420.8:c.240T>G	ENSMUSP00000020420.7:p.Ile80Met	H-2-Kb	9	3	9	ISWAAFNIM	ISWAAFNII	NetMHCpan	77.2	105.8	1.37	202	0.203	160.434	309.664	1.93	240.79	120.37	105.8	77.2	378.5384504	200.4979793	405.7420321	237.82089	M7	1.2	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	202	75	12	0.16	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.911667805	sgMsh2	cell line
chr10	50754122	50754122	G	T	ENSMUST00000035606.9	5	ENSMUSG00000038774	missense	S/I	1769	Ascc3	ENSMUST00000035606.9:c.5306G>T	ENSMUSP00000036726.8:p.Ser1769Ile	H-2-Kb	9	7	5	IMNPIYYSL	IMNPSYYSL	NetMHCpan	106.8	122.5	1.147	148	0.25	213.697	155.456	0.727	120.49	198.25	122.5	106.8	188.4126249	229.1447967	231.3396105	261.9690589	M7	-0.028571429	0.457142857	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.256	148	95	18	0.189473684	10qB3	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr10	125230903	125230903	G	A	ENSMUST00000211781.1	1	ENSMUSG00000020102	missense	A/V	289	Slc16a7	ENSMUST00000211781.1:c.866C>T	ENSMUSP00000147968.1:p.Ala289Val	H-2-Kb	9	8	4	SVMVFIDMF	SVMAFIDMF	NetMHC	199.66	270.37	1.354	129	0.209	426.629	529.669	1.242	270.37	199.66	474.4	700.4	584.9382211	369.9218633	662.5978159	483.3369531	M7	2.085714286	2.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.207	129	0	0	NA	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.943576178	sgMsh2	cell line
chr10	102388635	102388635	A	T	ENSMUST00000179929.7	5	ENSMUSG00000019888	missense	I/F	237	Mgat4c	ENSMUST00000179929.7:c.709A>T	ENSMUSP00000135959.1:p.Ile237Phe	H-2-Kb	9	3	9	CSRNFLTAF	CSRNFLTAI	NetMHC	200.59	153.03	0.763	209	0.234	335.59	325.985	0.971	153.03	200.59	200	364.2	451.9704069	306.9799422	647.5152482	484.4511598	M7	0.357142857	0.357142857	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.223	209	0	0	NA	10qD1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr10	125230903	125230903	G	A	ENSMUST00000211781.1	1	ENSMUSG00000020102	missense	A/V	289	Slc16a7	ENSMUST00000211781.1:c.866C>T	ENSMUSP00000147968.1:p.Ala289Val	H-2-Kb	9	3	9	SAFLLSVMV	SAFLLSVMA	NetMHC	201.59	1296.3	6.43	129	0.209	307.99	1245.488	4.044	1296.3	201.59	2455.1	423.3	1076.7379	269.8422814	1194.675617	346.1385739	M7	2.842857143	2.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.207	129	0	0	NA	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.943576178	sgMsh2	cell line
chr10	83191774	83191774	T	C	ENSMUST00000040110.7	1	ENSMUSG00000034612	missense	V/A	345	Chst11	ENSMUST00000040110.7:c.1034T>C	ENSMUSP00000045349.7:p.Val345Ala	H-2-Kb	9	10	5	FNYSAPNYL	FNYSVPNYL	NetMHCpan	205.3	260.7	1.27	44	0.227	250.371	324.048	1.294	357.62	295.1	260.7	205.3	290.4758291	205.6411387	488.9337312	435.7626466	M7	-0.414285714	-0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.245	44	0	0	NA	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr10	123163632	123163632	AT	A	ENSMUST00000220377.1	1	ENSMUSG00000020124	FS	N/X	215	Usp15	ENSMUST00000220377.1:c.644del	ENSMUSP00000151244.1:p.Asn215MetfsTer44	H-2-Kb	9	36	0	RSLLHLYQI	NA	NetMHC	329.25	NA	NA	156	0.212	452.183	NA	NA	NA	329.25	NA	363.3	NA	586.2866429	NA	541.0656958	M7	1.128571429	1.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.208	156	94	1	0.010638298	10qD2	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.948134517	sgMsh2	cell line
chr10	83191774	83191774	T	C	ENSMUST00000040110.7	1	ENSMUSG00000034612	missense	V/A	345	Chst11	ENSMUST00000040110.7:c.1034T>C	ENSMUSP00000045349.7:p.Val345Ala	H-2-Kb	9	12	3	YSAPNYLKL	YSVPNYLKL	NetMHCpan	252.8	193.2	0.764	44	0.227	456.573	312.981	0.686	186.11	355.64	193.2	252.8	529.7976163	588.9928191	432.7628777	557.5065832	M7	-0.128571429	-0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.245	44	0	0	NA	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr10	62563277	62563277	A	G	ENSMUST00000065887.13	1	ENSMUSG00000036955	missense	Y/H	313	Kif1bp	ENSMUST00000065887.13:c.937T>C	ENSMUSP00000065160.7:p.Tyr313His	H-2-Kb	9	7	5	CWIKHCLTL	CWIKYCLTL	SMM	252.412	202.353	0.802	153	0.196	411.623	333.985	0.811	328.15	396.42	599.6	854.8	202.3531643	252.4120012	339.8208329	426.8251484	M7	0.971428571	0.971428571	TRUE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.203	153	67	15	0.223880597	10qB4	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.925342822	sgMsh2	cell line
chr11	57201163	57201163	A	T	ENSMUST00000036315.15	1	ENSMUSG00000020524	missense	Y/F	228	Gria1	ENSMUST00000036315.15:c.683A>T	ENSMUSP00000044494.9:p.Tyr228Phe	H-2-Db	9	11	1	FILANLGFM	YILANLGFM	NetMHC	63.12	25.28	0.401	104	0.279	125.151	99.133	0.792	25.28	63.12	83.3	121.9	124.342616	143.4233955	114.9661532	128.4014713	M7	1.457142857	1.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.306	104	0	0	NA	11qB1.3	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr11	73814500	73814500	A	G	ENSMUST00000144724.2	2	ENSMUSG00000061984	missense	V/A	194	Olfr392	ENSMUST00000144724.2:c.581T>C	ENSMUSP00000123649.2:p.Val194Ala	H-2-Db	9	10	2	FANELMIFI	FVNELMIFI	SMM	200.734	1284.163	6.397	183	0.322	314.94	2543.055	8.075	3658.63	406.23	7290.5	928.5	1284.162549	200.7335661	1427.479894	223.6505652	M7	1.5	1.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.324	183	0	0	NA	11qB4	chr11-69590981-82929860	4	3	1	0.9	4.102505121	NA	2	1	sgMsh2	cell line
chr11	73589528	73589528	T	C	ENSMUST00000215689.1	5	ENSMUSG00000095095	missense	D/G	70	Olfr385	ENSMUST00000215689.1:c.209A>G	ENSMUSP00000149293.1:p.Asp70Gly	H-2-Kb	8	5	7	SNLSFSGL	SNLSFSDL	NetMHC	4.84	12.46	2.574	358	0.196	11.157	32.807	2.94	12.46	4.84	27	8.1	38.61357391	14.21477533	48.05515695	17.60921516	M7	0.7	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.205	358	0	0	NA	11qB4	chr11-69590981-82929860	4	3	1	0.9	4.102505121	NA	1	0.9344595	sgMsh2	cell line
chr11	69827851	69827851	T	G	ENSMUST00000108634.8	1	ENSMUSG00000051790	missense	N/T	301	Nlgn2	ENSMUST00000108634.8:c.902A>C	ENSMUSP00000104274.2:p.Asn301Thr	H-2-Kb	8	8	4	WSVTYQPL	WSVNYQPL	NetMHC	17.41	19.08	1.096	89	0.303	43.788	50.688	1.158	19.08	17.41	64.1	46.2	52.08827797	46.85328006	49.28786429	41.37518989	M7	0.014285714	0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.318	89	35	8	0.228571429	11qB3	chr11-69590981-82929860	4	3	1	0.9	4.102505121	NA	2	1	sgMsh2	cell line
chr11	8890482	8890482	T	C	ENSMUST00000154153.7	5	ENSMUSG00000046634	missense	T/A	1272	Pkd1l1	ENSMUST00000154153.7:c.3812A>G	ENSMUSP00000120803.1:p.Thr1272Ala	H-2-Kb	8	6	6	NVHRFAGL	NVHRFTGL	NetMHC	24.64	113.25	4.596	215	0.019	53.16	144.469	2.718	113.25	24.64	81.4	46.1	225.8083514	79.02054124	175.6871509	60.21989584	M7	0.642857143	0.642857143	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;Vardict	3	0.026	215	0	0	NA	11qA1	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	0.118516815	sgMsh2	cell line
chr11	57201163	57201163	A	T	ENSMUST00000036315.15	1	ENSMUSG00000020524	missense	Y/F	228	Gria1	ENSMUST00000036315.15:c.683A>T	ENSMUSP00000044494.9:p.Tyr228Phe	H-2-Kb	8	9	3	YHFILANL	YHYILANL	NetMHC	27.26	13.26	0.486	104	0.279	48.534	37.11	0.765	13.26	27.26	50	68.8	33.78625068	45.57639811	40.43337559	51.49202839	M7	1.428571429	1.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.306	104	0	0	NA	11qB1.3	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr11	73589528	73589528	T	C	ENSMUST00000215689.1	5	ENSMUSG00000095095	missense	D/G	70	Olfr385	ENSMUST00000215689.1:c.209A>G	ENSMUSP00000149293.1:p.Asp70Gly	H-2-Kb	8	10	2	SGLCFSSV	SDLCFSSV	NetMHC	33.47	3095.62	92.489	358	0.196	85.367	1044.666	12.237	3095.62	33.47	1543.9	58.6	461.0414792	112.1346934	545.4312289	133.5795574	M7	1.614285714	1.614285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.205	358	0	0	NA	11qB4	chr11-69590981-82929860	4	3	1	0.9	4.102505121	NA	1	0.9344595	sgMsh2	cell line
chr11	54917807	54917807	T	C	ENSMUST00000102731.7	5	ENSMUSG00000020400	missense	N/S	518	Tnip1	ENSMUST00000102731.7:c.1553A>G	ENSMUSP00000099792.1:p.Asn518Ser	H-2-Kb	8	7	5	VTLTSAQL	VTLTNAQL	NetMHC	33.83	131.35	3.883	54	0.296	52.786	101.959	1.932	131.35	33.83	203.2	98.8	72.56713881	50.90260401	60.77710368	54.66885777	M7	0.528571429	0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.316	54	113	23	0.203539823	11qB1.3	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	2	1	sgMsh2	cell line
chr10	129462699	129462699	A	G	ENSMUST00000213329.1	5	ENSMUSG00000096497	missense	T/A	8	Olfr787	ENSMUST00000213329.1:c.22A>G	ENSMUSP00000149391.1:p.Thr8Ala	H-2-Kb	8	6	3	VIAEFVLL	VITEFVLL	NetMHCpan	30.7	45.4	1.479	234	0.197	39.298	45.805	1.166	35.18	37.22	45.4	30.7	46.21042896	41.37518989	60.91720937	60.35871704	M7	2.485714286	2.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.201	234	0	0	NA	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.916226144	sgMsh2	cell line
chr11	57201163	57201163	A	T	ENSMUST00000036315.15	1	ENSMUSG00000020524	missense	Y/F	228	Gria1	ENSMUST00000036315.15:c.683A>T	ENSMUSP00000044494.9:p.Tyr228Phe	H-2-Kb	8	7	5	IGYHFILA	IGYHYILA	NetMHCpan	28.2	28.7	1.018	104	0.279	76.461	89.21	1.167	75.68	69.22	28.7	28.2	131.1414557	106.8415057	102.7401038	83.70280268	M7	1.142857143	1.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.306	104	0	0	NA	11qB1.3	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr11	35234893	35234893	C	T	ENSMUST00000069837.3	1	ENSMUSG00000056427	missense	P/L	133	Slit3	ENSMUST00000069837.3:c.398C>T	ENSMUSP00000066857.3:p.Pro133Leu	H-2-Kb	8	9	3	STLKLTRL	STPKLTRL	NetMHC	72.92	219.81	3.014	208	0.183	111.877	309.582	2.767	219.81	72.92	396.1	100.8	288.2305431	122.9532464	330.9329418	128.7478543	M7	0.228571429	0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.197	208	0	0	NA	11qA4	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	0.897992788	sgMsh2	cell line
chr10	129160683	129160683	TA	T	ENSMUST00000214271.1	5	ENSMUSG00000061367	FS	F/X	100	Olfr771	ENSMUST00000214271.1:c.300del	ENSMUSP00000151108.1:p.Phe100LeufsTer7	H-2-Kb	8	6	6	VIQVFLLM	VIQVFFTD	NetMHC	93.83	5112.29	54.485	204	0.265	119.114	2777.307	23.316	5112.29	93.83	6812.6	118.9	412.800296	119.3273511	442.3234863	149.1900983	M7	2.5	2.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.259	204	0	0	NA	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr11	70228498	70228498	T	C	ENSMUST00000000326.11	1	ENSMUSG00000000317	missense	I/V	131	Bcl6b	ENSMUST00000000326.11:c.391A>G	ENSMUSP00000000326.5:p.Ile131Val	H-2-Kb	8	11	1	VQASYEPL	IQASYEPL	NetMHC	102.79	115.06	1.119	63	0.206	120.288	127.764	1.062	115.06	102.79	136.2	128.7	119.3273511	111.8767908	137.6385219	141.1692151	M7	-0.728571429	-0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.233	63	1	0	0	11qB3	chr11-69590981-82929860	4	3	1	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr10	128225954	128225954	T	C	ENSMUST00000026455.7	1	ENSMUSG00000025389	missense	F/L	25	Mip	ENSMUST00000026455.7:c.73T>C	ENSMUSP00000026455.7:p.Phe25Leu	H-2-Kb	8	7	5	LFYVLFGL	LFYVFFGL	SMMPMBEC	75.29	7.059	0.094	73	0.178	94.735	7.697	0.081	8.12	112.78	60.9	291.1	7.273442335	76.69022289	7.058948282	75.29046857	M7	2.242857143	2.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.212	73	0	0	NA	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.966367873	sgMsh2	cell line
chr10	129160683	129160683	TA	T	ENSMUST00000214271.1	5	ENSMUSG00000061367	FS	F/X	100	Olfr771	ENSMUST00000214271.1:c.300del	ENSMUSP00000151108.1:p.Phe100LeufsTer7	H-2-Kb	8	8	4	QVFLLMFL	NA	SMM	123.521	NA	NA	204	0.265	158.776	NA	NA	NA	139.83	NA	308.1	NA	123.5207728	NA	177.7215122	M7	3.3	3.3	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.259	204	0	0	NA	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr11	61491124	61491124	G	T	ENSMUST00000079080.12	1	ENSMUSG00000001034	missense	L/I	321	Mapk7	ENSMUST00000079080.12:c.961C>A	ENSMUSP00000078087.6:p.Leu321Ile	H-2-Kb	8	11	1	ISLLGRML	LSLLGRML	SMMPMBEC	146.13	623.362	4.266	82	0.366	171.567	951.229	5.544	1370.14	166.23	1063.5	247.8	838.9575756	176.9049561	623.3615346	146.1302072	M7	1.085714286	1.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.36	82	37	7	0.189189189	11qB2	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	2	1	sgMsh2	cell line
chr10	127898691	127898691	A	T	ENSMUST00000047134.7	1	ENSMUSG00000040127	missense	N/I	16	Sdr9c7	ENSMUST00000047134.7:c.47A>T	ENSMUSP00000036628.7:p.Asn16Ile	H-2-Kb	8	4	8	FMYRWFKI	FMYRWFKN	NetMHCpan	85.2	1380.3	16.201	114	0.211	205.56	985.754	4.795	1666.42	174.67	1380.3	85.2	591.2075887	331.6958211	559.4225905	236.4503711	M7	-0.2	-0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.218	114	0	0	NA	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.993717907	sgMsh2	cell line
chr11	72058021	72058021	G	A	ENSMUST00000075258.12	1	ENSMUSG00000040543	missense	R/W	769	Pitpnm3	ENSMUST00000075258.12:c.2305C>T	ENSMUSP00000074737.6:p.Arg769Trp	H-2-Kb	8	9	3	VVWHWQDL	VVRHWQDL	NetMHCpan	164	1200.7	7.321	122	0.221	222.002	907.754	4.089	1202.31	270.69	1200.7	164	614.8086937	260.4593785	592.570463	183.5439188	M7	-0.571428571	-0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.216	122	3	0	0	11qB4	chr11-69590981-82929860	4	3	1	0.9	4.102505121	NA	1	0.984601229	sgMsh2	cell line
chr11	54493324	54493324	A	G	ENSMUST00000046835.13	1	ENSMUSG00000035992	missense	N/S	349	Fnip1	ENSMUST00000046835.13:c.1046A>G	ENSMUSP00000049026.7:p.Asn349Ser	H-2-Kb	8	11	1	SEFFFSHF	NEFFFSHF	SMMPMBEC	217.14	1232.367	5.675	112	0.205	285.252	1836.74	6.439	3606.75	338.27	1908.5	292.7	1764.980859	277.8049629	1232.366829	217.1400833	M7	0.528571429	0.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.223	112	58	10	0.172413793	11qB1.3	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr10	128225954	128225954	T	C	ENSMUST00000026455.7	1	ENSMUSG00000025389	missense	F/L	25	Mip	ENSMUST00000026455.7:c.73T>C	ENSMUSP00000026455.7:p.Phe25Leu	H-2-Kb	8	4	8	FATLFYVL	FATLFYVF	SMM	186.956	3039.065	16.255	73	0.178	256.251	3026.083	11.809	3020.09	366.72	2498.3	271.1	3039.065077	186.956255	3032.075422	241.4015198	M7	2.057142857	2.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.212	73	0	0	NA	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.966367873	sgMsh2	cell line
chr10	127898691	127898691	A	T	ENSMUST00000047134.7	1	ENSMUSG00000040127	missense	N/I	16	Sdr9c7	ENSMUST00000047134.7:c.47A>T	ENSMUSP00000036628.7:p.Asn16Ile	H-2-Kb	8	7	5	RWFKICNL	RWFKNCNL	NetMHCpan	258.1	700.6	2.714	114	0.211	400.196	532.619	1.331	607.37	372.1	700.6	258.1	457.867692	533.0156983	412.800296	428.2920371	M7	0.757142857	0.757142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.218	114	0	0	NA	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.993717907	sgMsh2	cell line
chr11	65855384	65855384	T	C	ENSMUST00000080665.9	5	ENSMUSG00000056752	missense	T/A	3968	Dnah9	ENSMUST00000080665.9:c.11902A>G	ENSMUSP00000079494.3:p.Thr3968Ala	H-2-Kb	8	5	7	VAKWLSAL	VAKWLSTL	NetMHCpan	256.9	254.4	0.99	52	0.212	396.113	672.266	1.697	664.17	383.21	254.4	256.9	680.361923	409.0157201	758.1235717	481.6593553	M7	0.8	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.234	52	0	0	NA	11qB3	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr10	130163110	130163110	A	G	ENSMUST00000216530.1	5	ENSMUSG00000058084	missense	I/T	72	Olfr825	ENSMUST00000216530.1:c.215T>C	ENSMUSP00000149981.1:p.Ile72Thr	H-2-Kb	8	6	6	GNLSFTDL	GNLSFIDL	SMMPMBEC	301.12	345.732	1.148	160	0.188	382.006	453.04	1.186	814.89	549.22	476.8	375.2	429.2793522	388.8123042	345.7323355	301.1202761	M7	0.271428571	0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.203	160	0	0	NA	10qD3	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	sgMsh2	cell line
chr11	61671685	61671685	T	A	ENSMUST00000004959.2	1	ENSMUSG00000004837	missense	C/S	161	Grap	ENSMUST00000004959.2:c.481T>A	ENSMUSP00000004959.2:p.Cys161Ser	H-2-Kb	8	10	2	ASFAQAQF	ACFAQAQF	NetMHCpan	311.8	2356.7	7.558	36	0.222	388.581	3968.216	10.212	6741.31	657.24	2356.7	311.8	4761.458462	401.5503419	3174.972734	375.6124682	M7	0.2	0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.221	36	0	0	NA	11qB2	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr11	8890482	8890482	T	C	ENSMUST00000154153.7	5	ENSMUSG00000046634	missense	T/A	1272	Pkd1l1	ENSMUST00000154153.7:c.3812A>G	ENSMUSP00000120803.1:p.Thr1272Ala	H-2-Kb	9	5	7	VNVHRFAGL	VNVHRFTGL	NetMHC	5.9	11.92	2.02	215	0.019	18.059	24.515	1.358	11.92	5.9	13.2	9.8	38.38044448	28.71507798	35.83026333	26.31782532	M7	0.642857143	0.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.026	215	0	0	NA	11qA1	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	0.118516815	sgMsh2	cell line
chr11	4075508	4075508	A	G	ENSMUST00000068322.6	1	ENSMUSG00000054986	missense	N/S	344	Sec14l3	ENSMUST00000068322.6:c.1031A>G	ENSMUSP00000065084.6:p.Asn344Ser	H-2-Kb	9	6	6	TSQRYSAHM	TSQRYNAHM	NetMHC	21.52	63.74	2.962	87	0.207	233.701	349.588	1.496	63.74	21.52	197.7	105.9	666.9756823	361.5014137	501.4758232	382.1641989	M7	-1.371428571	-1.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.225	87	0	0	NA	11qA1	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr11	51586645	51586645	A	G	ENSMUST00000167797.7	1	ENSMUSG00000020359	missense	N/S	88	Phykpl	ENSMUST00000167797.7:c.263A>G	ENSMUSP00000132190.1:p.Asn88Ser	H-2-Kb	9	11	1	SIVDYAQRL	NIVDYAQRL	NetMHC	65.03	1198.66	18.432	100	0.14	224.193	1403.004	6.258	1198.66	65.03	777.7	75.9	1607.348318	372.4860392	1683.642965	420.0006862	M7	-0.428571429	0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.17	100	13	2	0.153846154	11qB1.3	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	0.774917634	sgMsh2	cell line
chr11	73589528	73589528	T	C	ENSMUST00000215689.1	5	ENSMUSG00000095095	missense	D/G	70	Olfr385	ENSMUST00000215689.1:c.209A>G	ENSMUSP00000149293.1:p.Asp70Gly	H-2-Kb	9	4	8	LSNLSFSGL	LSNLSFSDL	NetMHC	77.38	306.14	3.956	358	0.196	272.367	618.078	2.269	306.14	77.38	837.5	215.8	666.9756823	328.9349344	569.1804832	370.8941642	M7	0.7	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.205	358	0	0	NA	11qB4	chr11-69590981-82929860	4	3	1	0.9	4.102505121	NA	1	0.9344595	sgMsh2	cell line
chr11	51048724	51048724	T	G	ENSMUST00000073543.1	NA	ENSMUSG00000057890	missense	L/V	206	Olfr1375	ENSMUST00000073543.1:c.616T>G	ENSMUSP00000144756.1:p.Leu206Val	H-2-Kb	9	10	2	TVFLFVAPC	TLFLFVAPC	NetMHC	95.5	658.85	6.899	247	0.206	222.429	737.169	3.314	658.85	95.5	783.7	210.3	1175.195176	333.5108752	690.6372522	234.557865	M7	2.328571429	2.7	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.211	247	0	0	NA	11qB1.3	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	0.961809534	sgMsh2	cell line
chr11	69827851	69827851	T	G	ENSMUST00000108634.8	1	ENSMUSG00000051790	missense	N/T	301	Nlgn2	ENSMUST00000108634.8:c.902A>C	ENSMUSP00000104274.2:p.Asn301Thr	H-2-Kb	9	7	5	SWSVTYQPL	SWSVNYQPL	NetMHC	104.12	98.21	0.943	89	0.303	218.024	183.135	0.84	98.21	104.12	661.2	458.8	134.9304597	138.7107117	231.3396105	297.3377153	M7	0.014285714	0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.318	89	35	8	0.228571429	11qB3	chr11-69590981-82929860	4	3	1	0.9	4.102505121	NA	2	1	sgMsh2	cell line
chr11	61546578	61546578	A	C	ENSMUST00000179936.7	1	ENSMUSG00000001036	missense	I/S	56	Epn2	ENSMUST00000179936.7:c.167T>G	ENSMUSP00000136950.1:p.Ile56Ser	H-2-Kb	9	6	6	VAFSESMSM	VAFSEIMSM	NetMHCpan	123.9	82.3	0.664	83	0.241	145.532	154.465	1.061	140.62	155.51	82.3	123.9	168.310031	135.5532704	254.8296748	263.7849417	M7	0.1	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.26	83	121	37	0.305785124	11qB2	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr10	130163110	130163110	A	G	ENSMUST00000216530.1	5	ENSMUSG00000058084	missense	I/T	72	Olfr825	ENSMUST00000216530.1:c.215T>C	ENSMUSP00000149981.1:p.Ile72Thr	H-2-Kb	9	10	2	FTDLFYSSV	FIDLFYSSV	NetMHC	172.77	202.67	1.173	160	0.188	302.521	266.244	0.88	202.67	172.77	803	499.9	237.1974414	281.2613131	295.2908568	323.779986	M7	0.628571429	0.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.203	160	0	0	NA	10qD3	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	sgMsh2	cell line
chr10	129462699	129462699	A	G	ENSMUST00000213329.1	5	ENSMUSG00000096497	missense	T/A	8	Olfr787	ENSMUST00000213329.1:c.22A>G	ENSMUSP00000149391.1:p.Thr8Ala	H-2-Kb	9	5	4	SVIAEFVLL	SVITEFVLL	NetMHCpan	102.3	87.8	0.858	234	0.197	229.822	200.378	0.872	153.52	182.88	87.8	102.3	247.2350273	276.7642557	269.9292823	321.5511003	M7	2.485714286	2.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.201	234	0	0	NA	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.916226144	sgMsh2	cell line
chr11	34688511	34688511	A	C	ENSMUST00000093193.11	1	ENSMUSG00000020143	missense	F/V	692	Dock2	ENSMUST00000093193.11:c.2074T>G	ENSMUSP00000090884.5:p.Phe692Val	H-2-Kb	9	3	9	IADRKFQHV	IADRKFQHF	NetMHC	212.65	440.04	2.069	201	0.274	462.533	404.981	0.876	440.04	212.65	1163	965.2	369.9218633	493.298733	333.6184037	431.7675507	M7	-1.657142857	-0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.267	201	0	0	NA	11qA4	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr11	54493324	54493324	A	G	ENSMUST00000046835.13	1	ENSMUSG00000035992	missense	N/S	349	Fnip1	ENSMUST00000046835.13:c.1046A>G	ENSMUSP00000049026.7:p.Asn349Ser	H-2-Kb	9	10	2	FSEFFFSHF	FNEFFFSHF	SMMPMBEC	166.437	185.033	1.112	112	0.205	216.734	259.001	1.195	307.57	235.72	668.8	321.4	210.4311361	197.7470439	185.033345	166.4370463	M7	0.528571429	0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.223	112	58	10	0.172413793	11qB1.3	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr10	129160683	129160683	TA	T	ENSMUST00000214271.1	5	ENSMUSG00000061367	FS	F/X	100	Olfr771	ENSMUST00000214271.1:c.300del	ENSMUSP00000151108.1:p.Phe100LeufsTer7	H-2-Kb	9	6	6	VIQVFLLMF	VIQVFFTDV	SMM	194.138	216.327	1.114	204	0.265	285.635	144.013	0.504	38.81	289.27	71.7	2223	216.3266376	194.1377536	237.2739171	282.000579	M7	2.257142857	2.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.259	204	0	0	NA	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr10	129463212	129463212	T	C	ENSMUST00000213329.1	5	ENSMUSG00000096497	missense	Y/H	179	Olfr787	ENSMUST00000213329.1:c.535T>C	ENSMUSP00000149391.1:p.Tyr179His	H-2-Kb	9	7	5	FSCDHFPIL	FSCDYFPIL	SMMPMBEC	181.656	144.627	0.796	264	0.174	286.881	186.193	0.649	172.35	324.24	204.4	459.8	200.0368468	249.5226649	144.6272072	181.6561058	M7	0.757142857	0.757142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.183	264	0	0	NA	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.834176041	sgMsh2	cell line
chr10	128225954	128225954	T	C	ENSMUST00000026455.7	1	ENSMUSG00000025389	missense	F/L	25	Mip	ENSMUST00000026455.7:c.73T>C	ENSMUSP00000026455.7:p.Phe25Leu	H-2-Kb	9	10	2	VLFGLGASL	VFFGLGASL	NetMHCpan	191.6	151	0.788	73	0.178	419.773	188.797	0.45	142.36	356.21	151	191.6	238.8416155	621.0263106	226.5948317	483.3369531	M7	1.514285714	2.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.212	73	0	0	NA	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.966367873	sgMsh2	cell line
chr10	128225954	128225954	T	C	ENSMUST00000026455.7	1	ENSMUSG00000025389	missense	F/L	25	Mip	ENSMUST00000026455.7:c.73T>C	ENSMUSP00000026455.7:p.Phe25Leu	H-2-Kb	9	4	8	FATLFYVLF	FATLFYVFF	SMM	115.109	210.916	1.832	73	0.178	258.835	462.582	1.787	677.85	368.99	1957.7	1319.2	210.91623	115.1091906	247.3147393	148.6791262	M7	2.2	2.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.212	73	0	0	NA	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.966367873	sgMsh2	cell line
chr11	30149994	30149994	T	A	ENSMUST00000006629.13	5	ENSMUSG00000020315	missense	I/F	195	Sptbn1	ENSMUST00000006629.13:c.583A>T	ENSMUSP00000006629.7:p.Ile195Phe	H-2-Kb	9	9	3	VNFHNFTTS	VNIHNFTTS	SMM	120.812	337.373	2.793	131	0.29	276.273	966.303	3.498	1450.38	372.97	2294.1	416.4	337.3727491	120.8119794	482.2253089	179.5767056	M7	-0.471428571	-0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.299	131	522	126	0.24137931	11qA3.3	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr11	65855384	65855384	T	C	ENSMUST00000080665.9	5	ENSMUSG00000056752	missense	T/A	3968	Dnah9	ENSMUST00000080665.9:c.11902A>G	ENSMUSP00000079494.3:p.Thr3968Ala	H-2-Kb	9	4	8	LVAKWLSAL	LVAKWLSTL	NetMHCpan	330.3	316.2	0.957	52	0.212	385.746	454.022	1.177	486.24	374.2	316.2	330.3	421.8033261	397.2921646	509.6241499	473.4237051	M7	0.8	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.234	52	0	0	NA	11qB3	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr10	127898691	127898691	A	T	ENSMUST00000047134.7	1	ENSMUSG00000040127	missense	N/I	16	Sdr9c7	ENSMUST00000047134.7:c.47A>T	ENSMUSP00000036628.7:p.Asn16Ile	H-2-Kb	9	3	9	AFMYRWFKI	AFMYRWFKN	SMMPMBEC	388.374	1097.11	2.825	114	0.211	473.19	4862.087	10.275	7448.5	421.44	15247.4	1002	2275.67375	524.9404026	1097.109561	388.3738676	M7	-0.2	0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.218	114	0	0	NA	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.993717907	sgMsh2	cell line
chr11	35234893	35234893	C	T	ENSMUST00000069837.3	1	ENSMUSG00000056427	missense	P/L	133	Slit3	ENSMUST00000069837.3:c.398C>T	ENSMUSP00000066857.3:p.Pro133Leu	H-2-Kb	9	8	4	QSTLKLTRL	QSTPKLTRL	SMM	336.597	566.383	1.683	208	0.183	433.519	1078.084	2.487	1426.29	422.15	2368	1961.7	566.3827268	336.5968133	729.8775406	444.8872915	M7	0.228571429	0.228571429	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.197	208	0	0	NA	11qA4	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	0.897992788	sgMsh2	cell line
chr11	56040841	56040841	T	C	ENSMUST00000037682.2	1	ENSMUSG00000037393	missense	M/V	15	Nmur2	ENSMUST00000037682.2:c.43A>G	ENSMUSP00000044718.2:p.Met15Val	H-2-Kb	9	3	9	ASWIHDSLV	ASWIHDSLM	SMMPMBEC	322.292	195.097	0.605	69	0.217	418.591	286.934	0.685	349.94	454.26	389.1	712.1	223.9288243	382.9217191	195.0967344	322.2923521	M7	0.585714286	0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.23	69	0	0	NA	11qB1.3	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr11	57201163	57201163	A	T	ENSMUST00000036315.15	1	ENSMUSG00000020524	missense	Y/F	228	Gria1	ENSMUST00000036315.15:c.683A>T	ENSMUSP00000044494.9:p.Tyr228Phe	H-2-Kb	10	7	5	IGYHFILANL	IGYHYILANL	NetMHC	6.2	6.99	1.127	104	0.279	352.854	457.27	1.296	6.99	6.2	9.1	7.7	1378.256343	975.7307681	905.4406743	698.0073568	M7	1.428571429	1.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.306	104	0	0	NA	11qB1.3	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr11	86139118	86139118	T	C	ENSMUST00000044423.3	1	ENSMUSG00000034329	missense	I/V	567	Brip1	ENSMUST00000044423.3:c.1699A>G	ENSMUSP00000043108.3:p.Ile567Val	H-2-Db	9	3	9	YSWTNQIAV	YSWTNQIAI	NetMHC	9.99	5.83	0.584	131	0.183	48.849	20.171	0.413	5.83	9.99	12.7	28.9	30.24266091	71.71665086	27.6420342	68.79707912	M7	0.271428571	0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.183	131	24	3	0.125	11qC	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	0.834176041	sgMsh2	cell line
chr11	103619996	103619996	A	G	ENSMUST00000059279.12	1	ENSMUSG00000034239	missense	V/A	382	Gm884	ENSMUST00000059279.12:c.1145T>C	ENSMUSP00000058511.6:p.Val382Ala	H-2-Db	9	4	8	YHLPNVTAI	YHLPNVTVI	NetMHC	56.39	38.29	0.679	219	0.233	159.769	166.071	1.039	38.29	56.39	142.2	163	189.9415598	156.538079	194.7914991	182.2090736	M7	1.214285714	1.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.24	219	0	0	NA	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr11	94570669	94570669	T	C	ENSMUST00000103164.3	1	ENSMUSG00000076435	missense	H/R	278	Acsf2	ENSMUST00000103164.3:c.833A>G	ENSMUSP00000099453.3:p.His278Arg	H-2-Db	9	11	1	RNIVNNSML	HNIVNNSML	NetMHCpan	355.7	541.7	1.523	171	0.222	374.205	522.96	1.398	1227	760.51	541.7	355.7	504.219921	377.2419664	474.8648239	371.1675498	M7	0.942857143	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.224	171	18	5	0.277777778	11qD	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr12	11456985	11456985	TA	T	ENSMUST00000124065.1	2	ENSMUSG00000086022	FS	K/X	303	Rad51ap2	ENSMUST00000124065.1:c.914del	ENSMUSP00000128854.1:p.Asn305MetfsTer25	H-2-Kb	8	26	0	VTTSHSPL	NA	NetMHC	52.66	NA	NA	154	0.208	63.794	NA	NA	NA	52.66	NA	188.4	NA	55.68522772	NA	71.90183929	M7	-0.571428571	-0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2078	154	0	0	NA	12qA1.1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.947222849	sgMsh2	cell line
chr11	94463486	94463486	A	G	ENSMUST00000100561.9	1	ENSMUSG00000020866	missense	V/A	201	Cacna1g	ENSMUST00000100561.9:c.602T>C	ENSMUSP00000098127.3:p.Val201Ala	H-2-Kb	8	6	6	SMRILATL	SMRILVTL	NetMHC	125.84	682.84	5.426	74	0.311	204.421	684.749	3.35	682.84	125.84	351.5	171.3	686.6572344	237.5417764	846.7203545	293.5891489	M7	1.514285714	1.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.316	74	0	0	NA	11qD	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	2	1	sgMsh2	cell line
chr11	106376336	106376336	A	G	ENSMUST00000106816.7	1	ENSMUSG00000009210	missense	Y/C	109	Prr29	ENSMUST00000106816.7:c.326A>G	ENSMUSP00000102429.1:p.Tyr109Cys	H-2-Kb	8	5	7	LVYHHHCL	LVYHHHYL	NetMHCpan	79.1	15.7	0.198	37	0.162	148.987	42.351	0.284	35.3	220.6	15.7	79.1	52.8128981	160.9681675	49.40148455	137.0061303	M7	-0.057142857	-0.057142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.172	37	0	0	NA	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	0.784034312	sgMsh2	cell line
chr12	11456985	11456985	TA	T	ENSMUST00000124065.1	2	ENSMUSG00000086022	FS	K/X	303	Rad51ap2	ENSMUST00000124065.1:c.914del	ENSMUSP00000128854.1:p.Asn305MetfsTer25	H-2-Kb	8	12	2	KMYMWKMI	NA	NetMHCpan	178.7	NA	NA	154	0.208	426.899	NA	NA	NA	238.99	NA	178.7	NA	1020.328459	NA	614.8086937	M7	0.585714286	0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2078	154	0	0	NA	12qA1.1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.947222849	sgMsh2	cell line
chr11	117812466	117812466	C	T	ENSMUST00000026649.13	1	ENSMUSG00000048277	missense	A/V	36	Syngr2	ENSMUST00000026649.13:c.107C>T	ENSMUSP00000026649.7:p.Ala36Val	H-2-Kb	8	6	6	VSMVLVLI	VSMVLALI	NetMHCpan	211	48.7	0.231	75	0.267	416.557	107.089	0.257	46.99	355.87	48.7	211	240.2923806	694.6083504	165.4778997	477.2434758	M7	3.085714286	3.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.279	75	114	29	0.254385965	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr11	117812466	117812466	C	T	ENSMUST00000026649.13	1	ENSMUSG00000048277	missense	A/V	36	Syngr2	ENSMUST00000026649.13:c.107C>T	ENSMUSP00000026649.7:p.Ala36Val	H-2-Kb	8	11	1	VLIVFSCI	ALIVFSCI	NetMHCpan	183.7	735.4	4.003	75	0.267	340.461	1235.282	3.628	2919.74	536.25	735.4	183.7	1516.142424	402.476011	954.4210297	278.4453695	M7	3.071428571	3.071428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.279	75	114	29	0.254385965	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr11	80330582	80330582	T	C	ENSMUST00000017836.7	1	ENSMUSG00000017692	missense	V/A	182	Rhbdl3	ENSMUST00000017836.7:c.545T>C	ENSMUSP00000017836.7:p.Val182Ala	H-2-Kb	8	6	6	FLYNGALL	FLYNGVLL	SMMPMBEC	315.312	909.369	2.884	66	0.303	431.283	1158.447	2.686	2001.54	549.03	1145.4	457.3	1171.493815	405.2658414	909.3686959	315.3116375	M7	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.293	66	0	0	NA	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr12	21251157	21251157	AC	A	ENSMUST00000064595.14	5	ENSMUSG00000052632	FS	T/X	656	Asap2	ENSMUST00000064595.14:c.1970del	ENSMUSP00000063217.8:p.Pro657ArgfsTer111	H-2-Kb	8	60	0	WTRSYSLV	NA	SMM	374.749	NA	NA	238	0.143	485.323	NA	NA	NA	592.43	NA	1187.8	NA	374.7485835	NA	378.2160895	M7	-0.014285714	-0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1429	238	46	2	0.043478261	12qA1.3	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.651386646	sgMsh2	cell line
chr12	21251157	21251157	AC	A	ENSMUST00000064595.14	5	ENSMUSG00000052632	FS	T/X	656	Asap2	ENSMUST00000064595.14:c.1970del	ENSMUSP00000063217.8:p.Pro657ArgfsTer111	H-2-Kb	9	36	0	LTPMFTSSM	NA	NetMHC	109.41	NA	NA	238	0.143	327.653	NA	NA	NA	109.41	NA	116.9	NA	538.4061351	NA	594.6343592	M7	0.385714286	0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1429	238	46	2	0.043478261	12qA1.3	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.651386646	sgMsh2	cell line
chr12	16822106	16822106	A	T	ENSMUST00000020908.8	1	ENSMUSG00000057469	missense	T/S	184	E2f6	ENSMUST00000020908.8:c.550A>T	ENSMUSP00000020908.7:p.Thr184Ser	H-2-Kb	9	7	5	LAYVSYQDI	LAYVTYQDI	NetMHC	112.91	79.49	0.704	265	0.2	164.028	168.168	1.025	79.49	112.91	153.9	137.4	182.4357725	206.1151905	206.6569426	190.6557905	M7	-0.242857143	0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.202	265	95	9	0.094736842	12qA1.1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.920784483	sgMsh2	cell line
chr12	21251157	21251157	AC	A	ENSMUST00000064595.14	5	ENSMUSG00000052632	FS	T/X	656	Asap2	ENSMUST00000064595.14:c.1970del	ENSMUSP00000063217.8:p.Pro657ArgfsTer111	H-2-Kb	9	58	0	TMWTRSYSL	NA	NetMHCpan	106.3	NA	NA	238	0.143	120.513	NA	NA	NA	129.63	NA	106.3	NA	115.6405104	NA	125.3862749	M7	-0.742857143	-0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1429	238	46	2	0.043478261	12qA1.3	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.651386646	sgMsh2	cell line
chr11	79473420	79473420	A	G	ENSMUST00000071325.8	2	ENSMUSG00000020716	missense	T/A	1559	Nf1	ENSMUST00000071325.8:c.4675A>G	ENSMUSP00000071289.2:p.Thr1559Ala	H-2-Kb	9	8	4	VADAHWSSL	VADTHWSSL	SMMPMBEC	151.792	127.424	0.839	194	0.026	173.983	146.213	0.84	141.38	178.88	300.6	314.2	151.0462682	169.0869148	127.4236379	151.7923903	M7	-0.514285714	-0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.028	194	44	2	0.045454545	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.102505121	NA	1	0.127633493	sgMsh2	cell line
chr11	107735220	107735220	C	A	ENSMUST00000021066.3	1	ENSMUSG00000020723	missense	G/C	182	Cacng4	ENSMUST00000021066.3:c.544G>T	ENSMUSP00000021066.3:p.Gly182Cys	H-2-Kb	9	8	4	YNYCWSFYF	YNYGWSFYF	SMM	107.179	107.922	1.007	84	0.202	162.143	162.195	1	205.71	197.08	144.4	152	107.9220037	107.1790739	179.9906727	172.2860048	M7	0.542857143	0.542857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.214	84	0	0	NA	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	0.975484551	sgMsh2	cell line
chr12	11456985	11456985	TA	T	ENSMUST00000124065.1	2	ENSMUSG00000086022	FS	K/X	303	Rad51ap2	ENSMUST00000124065.1:c.914del	ENSMUSP00000128854.1:p.Asn305MetfsTer25	H-2-Kb	9	12	2	KMYMWKMIF	NA	SMM	143.255	NA	NA	154	0.208	173.374	NA	NA	NA	230.51	NA	152.1	NA	143.2550696	NA	194.6480243	M7	0.714285714	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2078	154	0	0	NA	12qA1.1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.947222849	sgMsh2	cell line
chr12	3984561	3984561	T	C	ENSMUST00000111178.1	1	ENSMUSG00000020658	missense	N/S	203	Efr3b	ENSMUST00000111178.1:c.608A>G	ENSMUSP00000106809.1:p.Asn203Ser	H-2-Kb	9	4	8	IVPSLLFSL	IVPSLLFNL	NetMHCpan	166.1	98.3	0.592	77	0.247	314.099	222.32	0.708	111.13	239.95	98.3	166.1	333.5108752	388.2486909	525.1096507	590.540925	M7	1.571428571	2.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.26	77	0	0	NA	12qA1.1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	2	1	sgMsh2	cell line
chr11	80330582	80330582	T	C	ENSMUST00000017836.7	1	ENSMUSG00000017692	missense	V/A	182	Rhbdl3	ENSMUST00000017836.7:c.545T>C	ENSMUSP00000017836.7:p.Val182Ala	H-2-Kb	9	4	8	ALFLYNGAL	ALFLYNGVL	NetMHCpan	136.3	280.8	2.06	66	0.303	313.442	623.902	1.99	841.75	242.07	280.8	136.3	771.0987516	547.154531	476.7053215	384.8132346	M7	1	1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.293	66	0	0	NA	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr11	78171162	78171162	A	G	ENSMUST00000017549.12	1	ENSMUSG00000017405	missense	I/T	252	Nek8	ENSMUST00000017549.12:c.755T>C	ENSMUSP00000017549.6:p.Ile252Thr	H-2-Kb	9	8	4	LSHTMAQPL	LSHIMAQPL	NetMHC	279.75	235.37	0.841	82	0.244	481.659	393.402	0.817	235.37	279.75	331.7	432.3	455.1033161	531.018926	483.3369531	565.2622723	M7	-0.214285714	-0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.267	82	9	1	0.111111111	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr11	107735220	107735220	C	A	ENSMUST00000021066.3	1	ENSMUSG00000020723	missense	G/C	182	Cacng4	ENSMUST00000021066.3:c.544G>T	ENSMUSP00000021066.3:p.Gly182Cys	H-2-Kb	9	11	1	CWSFYFGAL	GWSFYFGAL	SMM	162.971	285.831	1.754	84	0.202	275.033	502.184	1.826	805.43	301.61	698.7	371.8	285.8314418	162.970876	305.6680173	248.4562923	M7	1.242857143	1.242857143	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.214	84	0	0	NA	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	0.975484551	sgMsh2	cell line
chr12	21251157	21251157	AC	A	ENSMUST00000064595.14	5	ENSMUSG00000052632	FS	T/X	656	Asap2	ENSMUST00000064595.14:c.1970del	ENSMUSP00000063217.8:p.Pro657ArgfsTer111	H-2-Kb	9	84	0	ASFSPMLCL	NA	SMM	342.066	NA	NA	238	0.143	364.635	NA	NA	NA	384.17	NA	345.1	NA	342.0660715	NA	400.1750427	M7	1.771428571	1.771428571	FALSE	FALSE	FALSE	1	FALSE	0	Strelka2;Vardict	2	0.1429	238	46	2	0.043478261	12qA1.3	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.651386646	sgMsh2	cell line
chr11	80330582	80330582	T	C	ENSMUST00000017836.7	1	ENSMUSG00000017692	missense	V/A	182	Rhbdl3	ENSMUST00000017836.7:c.545T>C	ENSMUSP00000017836.7:p.Val182Ala	H-2-Kb	9	3	9	VALFLYNGA	VALFLYNGV	SMM	359.84	90.18	0.251	66	0.303	384.378	85.49	0.222	42.89	402.95	80.8	710.1	90.17995204	359.8404656	105.9863656	365.8053055	M7	1	1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.293	66	0	0	NA	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr11	94463486	94463486	A	G	ENSMUST00000100561.9	1	ENSMUSG00000020866	missense	V/A	201	Cacna1g	ENSMUST00000100561.9:c.602T>C	ENSMUSP00000098127.3:p.Val201Ala	H-2-Kb	9	6	6	SMRILATLL	SMRILVTLL	SMM	368.222	342.066	0.929	74	0.311	455.245	372.507	0.818	338.86	407.89	502.9	502.6	342.0660715	368.2222268	402.9489236	520.2954165	M7	1.785714286	1.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.316	74	0	0	NA	11qD	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	2	1	sgMsh2	cell line
chr11	86139118	86139118	T	C	ENSMUST00000044423.3	1	ENSMUSG00000034329	missense	I/V	567	Brip1	ENSMUST00000044423.3:c.1699A>G	ENSMUSP00000043108.3:p.Ile567Val	H-2-Kb	9	10	2	AVFDKTGVL	AIFDKTGVL	SMMPMBEC	307.079	312.788	1.019	131	0.183	392.324	427.484	1.09	795.55	720.82	454	396.4	400.9682638	388.2486909	312.7879401	307.0789168	M7	0.328571429	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.183	131	24	3	0.125	11qC	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	0.834176041	sgMsh2	cell line
chr11	101178044	101178044	C	T	ENSMUST00000103109.3	1	ENSMUSG00000017167	missense	L/F	138	Cntnap1	ENSMUST00000103109.3:c.412C>T	ENSMUSP00000099398.3:p.Leu138Phe	H-2-Kb	9	11	1	FHYHFTARY	LHYHFTARY	SMM	178.694	173.824	0.973	102	0.235	499.487	452.818	0.907	708.28	772.38	778.1	944.7	173.8241042	178.6940122	197.3558481	226.5948317	M7	-0.914285714	-0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.229	102	5	3	0.6	11qD	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr12	101058739	101058739	T	C	ENSMUST00000163095.8	5	ENSMUSG00000041846	missense	E/G	167	Ppp4r3a	ENSMUST00000163095.8:c.500A>G	ENSMUSP00000129654.1:p.Glu167Gly	H-2-Db	9	6	6	LALENGGYI	LALENEGYI	NetMHC	10.51	14.84	1.412	145	0.124	31.457	35.527	1.129	14.84	10.51	31.1	20.2	43.01500721	44.01695544	39.95489558	42.71397607	M7	-0.114285714	0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.14	145	162	29	0.179012346	12qE	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.638167463	sgMsh2	cell line
chr12	113490367	113490367	T	C	ENSMUST00000063317.3	NA	ENSMUSG00000051804	missense	V/A	268	Adam6b	ENSMUST00000063317.3:c.803T>C	ENSMUSP00000065529.2:p.Val268Ala	H-2-Db	9	10	2	TAYTNSDPF	TVYTNSDPF	NetMHCpan	15.4	81.5	5.292	372	0.199	23.883	201.28	8.428	445.31	19.02	81.5	15.4	219.0887109	34.2468002	183.4720865	28.74550879	M7	-1.228571429	-1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.188	372	0	0	NA	12qF1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.856967736	sgMsh2	cell line
chr12	64471562	64471562	C	A	ENSMUST00000059833.7	NA	ENSMUSG00000043060	missense	K/N	1043	Fscb	ENSMUST00000059833.7:c.3129G>T	ENSMUSP00000051554.6:p.Lys1043Asn	H-2-Db	9	7	5	VSGTNDDQI	VSGTKDDQI	NetMHC	119.37	17286.61	144.815	194	0.196	145.259	9508.967	65.462	17286.61	119.37	14214.3	388.9	4793.138739	147.4415881	4803.634994	143.0770575	M7	-1.514285714	-1.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.203	194	0	0	NA	12qC1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.925342822	sgMsh2	cell line
chr12	80967620	80967620	T	C	ENSMUST00000218162.1	1	ENSMUSG00000021135	missense	T/A	109	Slc10a1	ENSMUST00000218162.1:c.325A>G	ENSMUSP00000151555.1:p.Thr109Ala	H-2-Db	9	4	8	GNLSNLFAL	GNLSNLFTL	NetMHC	257.28	99.2	0.386	60	0.183	282.664	158.975	0.562	99.2	257.28	134.9	270.5	192.1409794	324.8029761	183.0501124	294.8288646	M7	1.671428571	1.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.197	60	0	0	NA	12qD1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.897992788	sgMsh2	cell line
chr12	85139623	85139623	T	A	ENSMUST00000221972.1	1	ENSMUSG00000019235	missense	Y/F	237	Rps6kl1	ENSMUST00000221972.1:c.710A>T	ENSMUSP00000152336.1:p.Tyr237Phe	H-2-Kb	8	7	5	DHFQFSGL	DHFQYSGL	SMM	68.824	84.477	1.227	88	0.182	111.998	168.647	1.506	236.43	141.82	972.8	631.6	84.47729517	68.82401428	100.8648855	82.17505435	M7	0.214285714	0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.171	88	0	0	NA	12qD1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.779475973	sgMsh2	cell line
chr12	54685943	54685943	TG	T	ENSMUST00000161592.7	1	ENSMUSG00000054302	FS	H/X	127	Eapp	ENSMUST00000161592.7:c.381del	ENSMUSP00000123698.1:p.His127GlnfsTer52	H-2-Kb	8	53	0	SLFQTVML	NA	SMMPMBEC	306.719	NA	NA	164	0.262	372.068	NA	NA	NA	617.01	NA	379.6	NA	364.5356443	NA	306.71852	M7	1.757142857	1.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.257	164	171	37	0.216374269	12qC1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	2	1	sgMsh2	cell line
chr12	88795504	88795504	G	A	ENSMUST00000163134.7	5	ENSMUSG00000066392	missense	S/N	107	Nrxn3	ENSMUST00000163134.7:c.320G>A	ENSMUSP00000129678.1:p.Ser107Asn	H-2-Kb	8	11	1	NSWHFLMV	SSWHFLMV	NetMHCpan	158.7	22.1	0.139	189	0.201	264.274	32.335	0.122	23.39	637.57	22.1	158.7	46.316955	294.2659418	41.2800296	234.2825811	M7	1.114285714	1.114285714	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.207	189	0	0	NA	12qD3	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.943576178	sgMsh2	cell line
chr12	70014794	70014794	T	A	ENSMUST00000222237.1	5	ENSMUSG00000021068	missense	N/Y	2099	Nin	ENSMUST00000222237.1:c.6295A>T	ENSMUSP00000152240.1:p.Asn2099Tyr	H-2-Kb	9	9	3	VRYLAPAPL	VRNLAPAPL	NetMHC	104.19	3753.05	36.021	124	0.169	192.684	3004.294	15.592	3753.05	104.19	5298.2	215.5	1667.669554	169.8673846	2255.53723	252.4933823	M7	0.957142857	0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.159	124	20	4	0.2	12qC2	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.724775905	sgMsh2	cell line
chr12	64967733	64967733	T	C	ENSMUST00000066296.8	1	ENSMUSG00000035614	missense	V/A	586	Togaram1	ENSMUST00000066296.8:c.1757T>C	ENSMUSP00000070382.7:p.Val586Ala	H-2-Kb	9	8	4	QGFAEYAIL	QGFVEYAIL	NetMHCpan	84.6	72.4	0.856	194	0.175	170.949	111.203	0.651	66.96	104.7	72.4	84.6	150.006473	237.1974414	224.5173978	307.7868068	M7	1.414285714	1.414285714	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.18	194	88	19	0.215909091	12qC1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.820501024	sgMsh2	cell line
chr12	72470286	72470286	T	C	ENSMUST00000162159.7	1	ENSMUSG00000021090	missense	V/A	603	Lrrc9	ENSMUST00000162159.7:c.1808T>C	ENSMUSP00000124394.1:p.Val603Ala	H-2-Kb	9	4	8	FVFDHDLAL	FVFDHDLVL	SMM	222.9	314.13	1.409	229	0.162	235.276	444.635	1.89	575.14	247.58	741.4	377.4	314.1304236	222.8999649	276.216743	222.9718309	M7	0.285714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.16	229	0	0	NA	12qC3	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.729334244	sgMsh2	cell line
chr12	24044796	24044796	A	G	ENSMUST00000101538.4	1	ENSMUSG00000073158	missense	C/R	125	9030624G23Rik	ENSMUST00000101538.4:c.373T>C	ENSMUSP00000099077.3:p.Cys125Arg	H-2-Kb	9	6	6	SWVLRRCRI	SWVLRCCRI	NetMHC	298.07	249.64	0.838	205	0.185	409.78	346.62	0.846	249.64	298.07	1480.4	1958.9	304.8667072	342.8546153	388.3738676	476.7053215	M7	0.214285714	0.214285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.196	205	0	0	NA	12qA1.3	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.893434449	sgMsh2	cell line
chr12	113490367	113490367	T	C	ENSMUST00000063317.3	NA	ENSMUSG00000051804	missense	V/A	268	Adam6b	ENSMUST00000063317.3:c.803T>C	ENSMUSP00000065529.2:p.Val268Ala	H-2-Kb	9	10	2	TAYTNSDPF	TVYTNSDPF	SMM	336.597	378.538	1.125	372	0.199	436.156	441.835	1.013	455.86	502.27	668.7	603.2	378.5384504	336.5968133	427.809082	370.0411313	M7	-1.228571429	-1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.188	372	0	0	NA	12qF1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.856967736	sgMsh2	cell line
chr13	30381461	30381461	T	C	ENSMUST00000066412.7	1	ENSMUSG00000049115	missense	Y/H	170	Agtr1a	ENSMUST00000066412.7:c.508T>C	ENSMUSP00000070958.7:p.Tyr170His	H-2-Db	9	5	7	VIHRNVHFI	VIHRNVYFI	NetMHC	120.7	74.78	0.62	234	0.218	262.57	243.855	0.929	74.78	120.7	223.7	259.3	264.0097708	265.8397991	329.2835233	374.6019209	M7	-0.414285714	-0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.218	234	0	0	NA	13qA3.2	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.993717907	sgMsh2	cell line
chr13	73950197	73950197	T	C	ENSMUST00000099384.3	1	ENSMUSG00000057649	missense	C/R	421	Brd9	ENSMUST00000099384.3:c.1261T>C	ENSMUSP00000096982.2:p.Cys421Arg	H-2-Db	9	11	1	RALSLQEFV	CALSLQEFV	NetMHC	183.3	545.9	2.978	85	0.141	259.843	490.992	1.89	545.9	183.3	935.3	607.3	407.9622703	265.8397991	436.0838467	253.8458104	M7	0.971428571	0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.16	85	37	3	0.081081081	13qC1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.729334244	sgMsh2	cell line
chr13	23184250	23184250	GC	G	ENSMUST00000227679.1	NA	ENSMUSG00000096099	FS	G/X	92	Vmn1r220	ENSMUST00000227679.1:c.275del	ENSMUSP00000154136.1:p.Gly92AlafsTer50	H-2-Kb	8	51	0	HSFGYSML	NA	NetMHC	12.81	NA	NA	351	0.023	22.387	NA	NA	NA	12.81	NA	17.5	NA	32.04350395	NA	27.27344509	M7	0.742857143	0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.027	351	0	0	NA	13qA3.1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.123075154	sgMsh2	cell line
chr13	23184250	23184250	GC	G	ENSMUST00000227679.1	NA	ENSMUSG00000096099	FS	G/X	92	Vmn1r220	ENSMUST00000227679.1:c.275del	ENSMUSP00000154136.1:p.Gly92AlafsTer50	H-2-Kb	8	18	0	VSSLWSRL	NA	NetMHC	36.78	NA	NA	351	0.023	59.619	NA	NA	NA	36.78	NA	58.6	NA	70.58948282	NA	60.63732022	M7	-0.028571429	0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.027	351	0	0	NA	13qA3.1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.123075154	sgMsh2	cell line
chr13	12212733	12212733	T	A	ENSMUST00000099856.5	1	ENSMUSG00000021311	missense	I/F	736	Mtr	ENSMUST00000099856.5:c.2206A>T	ENSMUSP00000097442.4:p.Ile736Phe	H-2-Kb	8	7	5	VGHLFPFM	VGHLIPFM	NetMHCpan	31.3	763.8	24.403	170	0.147	68.083	2828.237	41.541	3698.75	37.37	763.8	31.3	3117.022951	98.79614526	2539.451951	101.5640475	M7	0.871428571	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.14	170	15	2	0.133333333	13qA1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.638167463	sgMsh2	cell line
chr13	11595649	11595649	A	G	ENSMUST00000021750.14	1	ENSMUSG00000021313	missense	V/A	4097	Ryr2	ENSMUST00000021750.14:c.12290T>C	ENSMUSP00000021750.7:p.Val4097Ala	H-2-Kb	8	7	5	IGFNAAVL	IGFNVAVL	SMM	41.375	32.489	0.785	120	0.25	43.132	33.691	0.781	30.94	41.52	51.9	57.1	32.48927349	41.37518989	34.89313575	44.74453509	M7	1.5	1.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	120	0	0	NA	13qA1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr13	27245800	27245800	A	C	ENSMUST00000035273.3	1	ENSMUSG00000038891	missense	T/P	74	Prl3b1	ENSMUST00000035273.3:c.220A>C	ENSMUSP00000047680.2:p.Thr74Pro	H-2-Kb	8	8	4	TAWPYGLM	TAWTYGLM	NetMHCpan	43.7	33.9	0.776	77	0.13	173.631	86.002	0.495	40.56	82.57	33.9	43.7	174.0764414	292.2402293	131.4437679	264.691503	M7	0.471428571	0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.141	77	0	0	NA	13qA3.1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.642725802	sgMsh2	cell line
chr12	116841323	116841323	T	A	ENSMUST00000070733.8	1	ENSMUSG00000056553	missense	Y/N	153	Ptprn2	ENSMUST00000070733.8:c.457T>A	ENSMUSP00000064046.7:p.Tyr153Asn	H-2-Kb	8	10	2	RNLPYLEL	RYLPYLEL	NetMHCpan	108.5	442.5	4.078	198	0.207	174.548	1081.609	6.197	1195.52	141.25	442.5	108.5	967.6983488	207.8452003	1215.458122	303.2075422	M7	0.214285714	0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.213	198	0	0	NA	12qF2	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.970926212	sgMsh2	cell line
chr13	11595649	11595649	A	G	ENSMUST00000021750.14	1	ENSMUSG00000021313	missense	V/A	4097	Ryr2	ENSMUST00000021750.14:c.12290T>C	ENSMUSP00000021750.7:p.Val4097Ala	H-2-Kb	8	11	1	AAVLLTNL	VAVLLTNL	NetMHCpan	153.4	37.5	0.244	120	0.25	270.468	68.835	0.255	27.06	175.56	37.5	153.4	100.1705365	377.3462166	106.5957771	365.3759857	M7	1.885714286	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	120	0	0	NA	13qA1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr12	118298898	118298898	T	C	ENSMUST00000222314.1	1	ENSMUSG00000025323	missense	Q/R	471	Sp4	ENSMUST00000222314.1:c.1412A>G	ENSMUSP00000152603.1:p.Gln471Arg	H-2-Kb	8	5	7	ISWQTVRV	ISWQTVQV	SMMPMBEC	114.747	186.097	1.622	209	0.158	176.548	322.443	1.826	350.62	182.59	415	240.1	294.2659418	170.5061311	186.0972691	114.746646	M7	-0.285714286	-0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.151	209	17	3	0.176470588	12qF2	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.688309193	sgMsh2	cell line
chr13	49691501	49691501	T	C	ENSMUST00000165316.7	1	ENSMUSG00000037851	missense	F/L	163	Iars	ENSMUST00000165316.7:c.487T>C	ENSMUSP00000132082.1:p.Phe163Leu	H-2-Kb	8	7	5	VWWVLKQL	VWWVFKQL	NetMHC	221.26	18.02	0.081	103	0.039	369.958	34.932	0.094	18.02	221.26	95.6	469.4	43.02689433	453.6699358	26.83737286	286.246378	M7	0.371428571	0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.05	103	288	3	0.010416667	13qA5	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.227916951	sgMsh2	cell line
chr13	9575459	9575459	A	G	ENSMUST00000174552.7	1	ENSMUSG00000048264	missense	I/M	618	Dip2c	ENSMUST00000174552.7:c.1854A>G	ENSMUSP00000133806.1:p.Ile618Met	H-2-Kb	8	5	7	SSLRMLMV	SSLRMLIV	NetMHC	227.75	1260.38	5.534	143	0.252	362.114	1029.923	2.844	1260.38	227.75	922.9	467.1	874.4601036	336.3101696	1136.946424	387.9180607	M7	1.471428571	1.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.26	143	11	1	0.090909091	13qA1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr13	84294848	84294848	C	T	ENSMUST00000057495.9	1	ENSMUSG00000035762	missense	L/F	478	Tmem161b	ENSMUST00000057495.9:c.1432C>T	ENSMUSP00000055208.7:p.Leu478Phe	H-2-Kb	8	11	2	GFFYHQYL	GLFYHQYL	NetMHCpan	110.4	348	3.152	85	0.176	251.634	651.008	2.587	1503.26	289.27	348	110.4	747.7217263	254.5305993	554.2937734	248.7367755	M7	0.014285714	0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.183	85	31	6	0.193548387	13qC3	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.834176041	sgMsh2	cell line
chr13	64793242	64793242	T	C	ENSMUST00000091554.5	5	ENSMUSG00000033063	missense	D/G	308	Cntnap3	ENSMUST00000091554.5:c.923A>G	ENSMUSP00000089140.4:p.Asp308Gly	H-2-Kb	8	7	5	TSYLGLNF	TSYLDLNF	NetMHCpan	202.2	703.1	3.477	138	0.203	476.558	690.72	1.449	688.43	465.88	703.1	202.2	693.0107956	727.3442335	528.128981	487.2367077	M7	0.628571429	0.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.206	138	0	0	NA	13qB3	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.939017839	sgMsh2	cell line
chr13	23543231	23543231	T	C	ENSMUST00000224359.1	NA	ENSMUSG00000114456	missense	Y/C	41	H2bc9	ENSMUST00000224359.1:c.122A>G	ENSMUSP00000153277.1:p.Tyr41Cys	H-2-Kb	8	9	3	SVCVYKVL	SVYVYKVL	SMMPMBEC	165.478	16.624	0.1	249	0.281	338.312	12.062	0.036	6.66	683.22	7.5	468.3	17.69049561	208.324333	16.6241711	165.4778997	M7	1.957142857	1.957142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.282	249	7	2	0.285714286	13qA3.1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr12	113736545	113736545	GA	G	ENSMUST00000192264.1	NA	ENSMUSG00000095210	FS	F/X	18	Ighv5-9-1	ENSMUST00000192264.1:c.53del	ENSMUSP00000141243.1:p.Phe18SerfsTer6	H-2-Kb	8	5	7	FGLRLISL	FGLRLIFL	SMM	424.365	361.194	0.851	465	0.099	441.634	658.388	1.491	1479.56	842.66	914.3	445	361.1935614	424.3654321	402.476011	438.2682402	M7	1.457142857	1.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0989	465	0	0	NA	12qF1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.450819729	sgMsh2	cell line
chr13	55247836	55247836	GT	G	ENSMUST00000099490.2	5	ENSMUSG00000021488	FS	G/X	1186	Nsd1	ENSMUST00000099490.2:c.3558del	ENSMUSP00000097089.2:p.Ala1187LeufsTer19	H-2-Kb	8	14	0	ESYFLLTL	NA	NetMHCpan	120.7	NA	NA	59	0.119	313.904	NA	NA	NA	892.84	NA	120.7	NA	318.9627742	NA	308.8445912	M7	1.628571429	1.628571429	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.15	59	78	4	0.051282051	13qB1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.683750854	sgMsh2	cell line
chr13	84294848	84294848	C	T	ENSMUST00000057495.9	1	ENSMUSG00000035762	missense	L/F	478	Tmem161b	ENSMUST00000057495.9:c.1432C>T	ENSMUSP00000055208.7:p.Leu478Phe	H-2-Kb	9	10	3	FGFFYHQYL	FGLFYHQYL	NetMHCpan	8.2	34.1	4.159	85	0.176	63.013	177.21	2.812	52.25	17.07	34.1	8.2	357.3633412	127.382568	302.1690645	108.9557112	M7	0.014285714	0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.183	85	31	6	0.193548387	13qC3	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.834176041	sgMsh2	cell line
chr13	49722263	49722263	G	A	ENSMUST00000165316.7	1	ENSMUSG00000037851	missense	V/I	809	Iars	ENSMUST00000165316.7:c.2425G>A	ENSMUSP00000132082.1:p.Val809Ile	H-2-Kb	9	3	9	IHYLMLPRI	IHYLMLPRV	NetMHCpan	73.9	81.8	1.107	97	0.216	93.551	87.682	0.937	62.46	83.8	81.8	73.9	93.56426278	103.3023021	109.7109561	113.3052413	M7	0.942857143	1.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.218	97	91	25	0.274725275	13qA5	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.993717907	sgMsh2	cell line
chr13	23184250	23184250	GC	G	ENSMUST00000227679.1	NA	ENSMUSG00000096099	FS	G/X	92	Vmn1r220	ENSMUST00000227679.1:c.275del	ENSMUSP00000154136.1:p.Gly92AlafsTer50	H-2-Kb	9	49	0	SSHSFGYSM	NA	NetMHC	93.81	NA	NA	351	0.023	220.924	NA	NA	NA	93.81	NA	120.4	NA	321.4474612	NA	529.9684305	M7	-0.257142857	-0.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.027	351	0	0	NA	13qA3.1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.123075154	sgMsh2	cell line
chr13	13759442	13759442	T	C	ENSMUST00000110559.2	1	ENSMUSG00000019726	missense	I/T	3575	Lyst	ENSMUST00000110559.2:c.10724T>C	ENSMUSP00000106188.1:p.Ile3575Thr	H-2-Kb	9	10	2	VTTAYTNRL	VITAYTNRL	NetMHC	98.57	85.53	0.868	115	0.243	195.95	171.394	0.875	85.53	98.57	120.4	128.2	222.3873092	263.6999212	253.0754397	277.4917016	M7	-0.728571429	-0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.24	115	22	5	0.227272727	13qA1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr13	66956472	66956472	A	G	ENSMUST00000021990.3	1	ENSMUSG00000021518	missense	N/S	136	Ptdss1	ENSMUST00000021990.3:c.407A>G	ENSMUSP00000021990.3:p.Asn136Ser	H-2-Kb	9	4	8	LMYWLDPSL	LMYWLDPNL	SMM	98.426	84.549	0.859	233	0.232	121.089	87.587	0.723	75.17	140.26	113.3	198.7	84.54929682	98.4260372	90.62541326	101.9177905	M7	-0.071428571	0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.239	233	91	23	0.252747253	13qB3	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr12	116059469	116059469	A	T	ENSMUST00000183125.1	1	ENSMUSG00000042063	missense	E/V	269	Zfp386	ENSMUST00000183125.1:c.806A>T	ENSMUSP00000138305.1:p.Glu269Val	H-2-Kb	9	11	1	VTPYMYKEI	ETPYMYKEI	NetMHC	148.16	6532.43	44.09	139	0.151	252.595	4784.034	18.94	6532.43	148.16	6871.4	218.7	2979.270937	286.4903513	3035.638135	345.3424772	M7	-0.742857143	-0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.16	139	57	11	0.192982456	12qF2	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.729334244	sgMsh2	cell line
chr13	11595649	11595649	A	G	ENSMUST00000021750.14	1	ENSMUSG00000021313	missense	V/A	4097	Ryr2	ENSMUST00000021750.14:c.12290T>C	ENSMUSP00000021750.7:p.Val4097Ala	H-2-Kb	9	7	5	IGFNAAVLL	IGFNVAVLL	NetMHCpan	79.4	111.6	1.406	120	0.25	378.446	470.176	1.242	259.19	154.18	111.6	79.4	851.3536455	602.7122243	681.1613539	607.0856956	M7	2.1	2.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	120	0	0	NA	13qA1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr13	53118802	53118802	G	A	ENSMUST00000021918.8	1	ENSMUSG00000021464	missense	L/F	276	Ror2	ENSMUST00000021918.8:c.826C>T	ENSMUSP00000021918.8:p.Leu276Phe	H-2-Kb	9	8	4	SNPFILMRL	SNPLILMRL	NetMHCpan	123.2	176.6	1.433	74	0.27	355.403	342.444	0.964	133.05	164.91	176.6	123.2	508.2881677	545.8961105	685.8829388	652.0036095	M7	1.528571429	1.528571429	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.27	74	0	0	NA	13qB1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr12	116841323	116841323	T	A	ENSMUST00000070733.8	1	ENSMUSG00000056553	missense	Y/N	153	Ptprn2	ENSMUST00000070733.8:c.457T>A	ENSMUSP00000064046.7:p.Tyr153Asn	H-2-Kb	9	10	2	RNLPYLELL	RYLPYLELL	NetMHC	181.95	954.58	5.246	198	0.207	335.862	809.025	2.409	954.58	181.95	605.4	239.1	760.5188801	432.6233939	857.5313379	491.1905468	M7	1.257142857	1.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.213	198	0	0	NA	12qF2	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.970926212	sgMsh2	cell line
chr13	27245800	27245800	A	C	ENSMUST00000035273.3	1	ENSMUSG00000038891	missense	T/P	74	Prl3b1	ENSMUST00000035273.3:c.220A>C	ENSMUSP00000047680.2:p.Thr74Pro	H-2-Kb	9	8	4	TAWPYGLML	TAWTYGLML	NetMHCpan	89.7	86.7	0.967	77	0.13	280.853	209.973	0.748	153.72	208.32	86.7	89.7	400.9682638	466.7775928	266.2257137	353.3865369	M7	0.757142857	0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.141	77	0	0	NA	13qA3.1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.642725802	sgMsh2	cell line
chr13	84294848	84294848	C	T	ENSMUST00000057495.9	1	ENSMUSG00000035762	missense	L/F	478	Tmem161b	ENSMUST00000057495.9:c.1432C>T	ENSMUSP00000055208.7:p.Leu478Phe	H-2-Kb	9	12	1	FFYHQYLTV	LFYHQYLTV	SMM	182.856	177.873	0.973	85	0.176	249.969	228.71	0.915	259.61	272.82	311.4	457.9	177.8729877	182.8563304	197.8108003	227.1171867	M7	-0.285714286	0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.183	85	31	6	0.193548387	13qC3	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.834176041	sgMsh2	cell line
chr13	19630076	19630076	C	T	ENSMUST00000002883.6	1	ENSMUSG00000021319	missense	L/F	268	Sfrp4	ENSMUST00000002883.6:c.802C>T	ENSMUSP00000002883.5:p.Leu268Phe	H-2-Kb	9	7	5	RMMLFENCL	RMMLLENCL	SMM	164.479	604.102	3.673	132	0.167	257.546	1549.88	6.018	2651.64	298.14	2354.6	286.4	604.1016195	164.478827	745.1607995	228.6914879	M7	1.114285714	1.114285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.165	132	0	0	NA	13qA2	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.752125939	sgMsh2	cell line
chr13	61002408	61002408	T	C	ENSMUST00000071526.5	1	ENSMUSG00000055298	missense	N/S	259	Ctsj	ENSMUST00000071526.5:c.776A>G	ENSMUSP00000071457.4:p.Asn259Ser	H-2-Kb	9	5	7	DSFRFYSGG	DSFRFYNGG	SMM	289.141	331.215	1.146	110	0.218	326.198	552.765	1.695	687.46	305.46	1436.6	693.4	331.2150024	289.1412139	418.0709584	346.9365057	M7	-0.257142857	-0.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.237	110	0	0	NA	13qB2	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr13	60896722	60896722	C	T	ENSMUST00000225859.1	NA	ENSMUSG00000114432	missense	C/Y	22	Gm49391	ENSMUST00000225859.1:c.65G>A	ENSMUSP00000153232.1:p.Cys22Tyr	H-2-Kb	9	4	8	AVFLLILYL	AVFLLILCL	SMM	237.197	429.645	1.811	198	0.283	295.089	881.363	2.987	1333.08	330.61	2138.5	779.8	429.6452354	237.1974414	384.8132346	259.5673122	M7	3.028571429	3.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.275	198	0	0	NA	13qB2	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr13	23814941	23814941	T	G	ENSMUST00000006786.10	1	ENSMUSG00000036110	missense	L/V	106	Slc17a2	ENSMUST00000006786.10:c.316T>G	ENSMUSP00000006786.4:p.Leu106Val	H-2-Kb	9	3	9	ISYGIILTV	ISYGIILTL	NetMHCpan	176.6	46.9	0.266	116	0.198	340.056	148.11	0.436	150.59	468.91	46.9	176.6	157.438158	354.0870144	145.6297151	326.0243217	M7	2.085714286	2.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.205	116	0	0	NA	13qA3.1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.9344595	sgMsh2	cell line
chr14	62404549	62404549	C	T	ENSMUST00000022501.9	1	ENSMUSG00000021933	missense	R/Q	723	Gucy1b2	ENSMUST00000022501.9:c.2168G>A	ENSMUSP00000022501.3:p.Arg723Gln	H-2-Db	9	10	2	IQNLNATEV	IRNLNATEV	NetMHC	56.83	8000.29	140.776	101	0.04	201.436	4162.108	20.662	8000.29	56.83	7054.9	172.4	1260.723941	230.4729708	1269.316718	288.7819203	M7	-0.2	-0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.041	101	0	0	NA	14qD1	chr14-53336808-123291781	3	2	1	0.9	4.102505121	NA	1	0.1868919	sgMsh2	cell line
chr13	105444804	105444804	C	A	ENSMUST00000022235.5	NA	ENSMUSG00000021721	missense	P/H	184	Htr1a	ENSMUST00000022235.5:c.551C>A	ENSMUSP00000022235.4:p.Pro184His	H-2-Db	9	8	4	RSNHNECTI	RSNPNECTI	SMMPMBEC	82.522	130.488	1.581	102	0.294	93.833	193.026	2.057	245.57	86.13	327.8	392	140.4817795	101.5359882	130.4878273	82.52204846	M7	-1.057142857	-1.057142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.311	102	0	0	NA	13qD1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr14	70566157	70566157	A	G	ENSMUST00000161069.7	1	ENSMUSG00000022096	missense	M/V	773	Hr	ENSMUST00000161069.7:c.2317A>G	ENSMUSP00000124816.1:p.Met773Val	H-2-Kb	8	9	3	IHVAFAPV	IHMAFAPV	NetMHC	12.04	7.34	0.61	43	0.279	36.162	24.441	0.676	7.34	12.04	25.4	46.9	28.16696149	36.36972355	23.48226582	35.95340277	M7	1.428571429	1.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.296	43	4	0	0	14qD2	chr14-53336808-123291781	3	2	1	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr14	52036009	52036009	A	G	ENSMUST00000214071.1	5	ENSMUSG00000044286	missense	M/T	34	Olfr221	ENSMUST00000214071.1:c.101T>C	ENSMUSP00000150675.1:p.Met34Thr	H-2-Kb	8	10	2	VTYAITVL	VMYAITVL	NetMHCpan	26.2	23.8	0.908	101	0.366	60.149	92.464	1.537	54.39	47.73	23.8	26.2	137.3219621	75.63799359	130.5389154	72.56713881	M7	1.657142857	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.337	101	0	0	NA	14qC2	chr14-7006943-52852156	3	2	1	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr14	16423715	16423715	CA	C	ENSMUST00000017629.11	1	ENSMUSG00000017485	FS	K/X	1426	Top2b	ENSMUST00000017629.11:c.4282del	ENSMUSP00000017629.4:p.Ser1428ValfsTer41	H-2-Kb	8	18	0	IFFHFLHI	NA	SMMPMBEC	20.311	NA	NA	36	0.306	23.503	NA	NA	NA	60.11	NA	23.9	NA	23.10681036	NA	20.3114066	M7	1.471428571	1.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.35	36	98	3	0.030612245	14qA2	chr14-7006943-52852156	3	2	1	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr14	55636269	55636269	GA	G	ENSMUST00000122358.7	1	ENSMUSG00000002320	FS	S/X	591	Tm9sf1	ENSMUST00000122358.7:c.1771del	ENSMUSP00000113782.1:p.Ser591ProfsTer3	H-2-Kb	8	5	7	GTISFFPL	GTISFFSS	NetMHCpan	30.6	3875.2	126.641	61	0.279	48.755	2744.296	56.288	10230.88	66.3	3875.2	30.6	1613.392375	58.9847849	1454.587999	38.52476516	M7	1.542857143	1.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.273	61	84	15	0.178571429	14qC3	chr14-53336808-123291781	3	2	1	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr14	33359165	33359165	T	C	ENSMUST00000111956.8	1	ENSMUSG00000063506	missense	F/L	173	Arhgap22	ENSMUST00000111956.8:c.517T>C	ENSMUSP00000107587.2:p.Phe173Leu	H-2-Kb	8	11	1	LGPRLAPL	FGPRLAPL	NetMHC	66.34	68.71	1.036	43	0.279	156.493	143.133	0.915	68.71	66.34	133.6	124.3	152.6651821	212.1973715	160.597951	188.68614	M7	0.185714286	0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.3	43	20	7	0.35	14qB	chr14-7006943-52852156	3	2	1	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr14	65975611	65975611	T	G	ENSMUST00000022616.13	1	ENSMUSG00000022037	missense	F/V	149	Clu	ENSMUST00000022616.13:c.445T>G	ENSMUSP00000022616.6:p.Phe149Val	H-2-Kb	8	8	4	SSPVYFWM	SSPFYFWM	NetMHCpan	60.6	40.4	0.667	84	0.345	147.752	201.93	1.367	223.25	116.55	40.4	60.6	180.6092545	178.9534189	234.2825811	206.8902384	M7	0.614285714	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.329	84	12251	3842	0.313607052	14qD1	chr14-53336808-123291781	3	2	1	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr14	103177262	103177262	GA	G	ENSMUST00000159855.7	1	ENSMUSG00000033004	FS	F/X	2571	Mycbp2	ENSMUST00000159855.7:c.7713del	ENSMUSP00000124710.1:p.Gln2573ArgfsTer14	H-2-Kb	8	8	6	KAFFPRNL	KAFFPQEP	NetMHCpan	57.6	16323.4	283.392	165	0.273	126.941	20665.292	162.795	19059.57	128.93	16323.4	57.6	22271.01447	124.9510759	33553.66776	167.3940435	M7	0.228571429	0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.272	165	0	0	NA	14qE2.3	chr14-53336808-123291781	3	2	1	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr14	62404549	62404549	C	T	ENSMUST00000022501.9	1	ENSMUSG00000021933	missense	R/Q	723	Gucy1b2	ENSMUST00000022501.9:c.2168G>A	ENSMUSP00000022501.3:p.Arg723Gln	H-2-Kb	8	6	6	TYFLIQNL	TYFLIRNL	NetMHCpan	97.8	89.5	0.915	101	0.04	305.393	224.898	0.736	206.16	236.9	89.5	97.8	311.7022951	433.2514252	243.6351806	373.8866857	M7	0.942857143	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.041	101	0	0	NA	14qD1	chr14-53336808-123291781	3	2	1	0.9	4.102505121	NA	1	0.1868919	sgMsh2	cell line
chr15	8228693	8228693	C	T	ENSMUST00000110617.1	5	ENSMUSG00000039801	missense	P/L	2141	Cplane1	ENSMUST00000110617.1:c.6422C>T	ENSMUSP00000106247.1:p.Pro2141Leu	H-2-Kb	8	7	5	ASFPLAPA	ASFPPAPA	SMMPMBEC	236.995	674.124	2.844	55	0.182	262.187	998.639	3.809	1421.37	256	1321.6	326.5	675.6783445	268.3737286	674.1243274	236.9954455	M7	0.885714286	0.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.211	55	13	5	0.384615385	15qA1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.961809534	sgMsh2	cell line
chr14	21660934	21660934	A	G	ENSMUST00000182405.8	1	ENSMUSG00000021767	missense	T/A	650	Kat6b	ENSMUST00000182405.8:c.1948A>G	ENSMUSP00000138377.1:p.Thr650Ala	H-2-Kb	8	10	2	TALQHLHM	TTLQHLHM	NetMHC	413.65	463.09	1.12	43	0.302	490.709	386.044	0.787	463.09	413.65	393	428.4	357.8821189	553.0189331	379.0879676	599.4321055	M7	0.2	0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.301	43	10	2	0.2	14qA3	chr14-7006943-52852156	3	2	1	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr13	112895502	112895502	T	C	ENSMUST00000022281.4	1	ENSMUSG00000016018	missense	H/R	592	Mtrex	ENSMUST00000022281.4:c.1775A>G	ENSMUSP00000022281.3:p.His592Arg	H-2-Kb	8	5	7	SFYQFQRY	SFYQFQHY	SMMPMBEC	116.075	146.805	1.265	120	0.2	281.85	316.134	1.122	460.58	431.04	1059	1188.1	171.6880231	132.6600022	146.8047136	116.0753495	M7	-1.214285714	-1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.196	120	150	36	0.24	13qD2.2	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.893434449	sgMsh2	cell line
chr14	14771285	14771285	A	G	ENSMUST00000057015.7	1	ENSMUSG00000021733	missense	S/G	672	Slc4a7	ENSMUST00000057015.7:c.2014A>G	ENSMUSP00000058313.6:p.Ser672Gly	H-2-Kb	8	10	2	YGVSWGNL	YSVSWGNL	NetMHCpan	215.4	96.8	0.449	195	0.246	353.079	100.846	0.286	88.72	481.4	96.8	215.4	134.8155538	401.5503419	104.8914285	304.6070846	M7	0.285714286	0.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.266	195	124	39	0.314516129	14qA1	chr14-7006943-52852156	3	2	1	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr14	16423715	16423715	CA	C	ENSMUST00000017629.11	1	ENSMUSG00000017485	FS	K/X	1426	Top2b	ENSMUST00000017629.11:c.4282del	ENSMUSP00000017629.4:p.Ser1428ValfsTer41	H-2-Kb	8	44	0	LLFLLHHL	NA	NetMHCpan	100	NA	NA	36	0.306	245.822	NA	NA	NA	510.6	NA	100	NA	284.2758718	NA	207.3671696	M7	1.657142857	1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.35	36	98	3	0.030612245	14qA2	chr14-7006943-52852156	3	2	1	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr14	50767276	50767276	A	C	ENSMUST00000006451.7	1	ENSMUSG00000006288	missense	L/W	357	Ttc5	ENSMUST00000006451.7:c.1070T>G	ENSMUSP00000006451.6:p.Leu357Trp	H-2-Kb	8	5	7	VPFTFGWV	VPFTFGLV	SMM	58.444	34.893	0.597	87	0.31	289.376	48.781	0.169	58.86	512.57	161.8	603.5	34.89313575	58.44400914	38.70258739	66.18201718	M7	0.885714286	0.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.329	87	44	11	0.25	14qC1	chr14-7006943-52852156	3	2	1	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr14	23436016	23436016	TA	T	ENSMUST00000188285.6	1	ENSMUSG00000063142	FS	Y/X	680	Kcnma1	ENSMUST00000188285.6:c.2038del	ENSMUSP00000140275.1:p.Tyr680ThrfsTer31	H-2-Kb	8	8	4	AFFTARPV	NA	SMM	285.588	NA	NA	52	0.231	464.476	NA	NA	NA	585.6	NA	996.8	NA	285.5880296	NA	343.3523309	M7	0.685714286	0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.246	52	0	0	NA	14qA3	chr14-7006943-52852156	3	2	1	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr14	62404549	62404549	C	T	ENSMUST00000022501.9	1	ENSMUSG00000021933	missense	R/Q	723	Gucy1b2	ENSMUST00000022501.9:c.2168G>A	ENSMUSP00000022501.3:p.Arg723Gln	H-2-Kb	9	5	7	TTYFLIQNL	TTYFLIRNL	NetMHCpan	21.2	20.3	0.958	101	0.04	95.018	129.73	1.365	37	32.91	20.3	21.2	241.0515897	179.1059444	222.4590099	157.1267038	M7	0.942857143	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.041	101	0	0	NA	14qD1	chr14-53336808-123291781	3	2	1	0.9	4.102505121	NA	1	0.1868919	sgMsh2	cell line
chr13	104493669	104493669	A	G	ENSMUST00000224208.1	NA	ENSMUSG00000046169	missense	R/G	1107	Adamts6	ENSMUST00000224208.1:c.3319A>G	ENSMUSP00000153359.1:p.Arg1107Gly	H-2-Kb	9	5	7	CSRAYFGQM	CSRAYFRQM	NetMHC	56.05	51.56	0.92	133	0.226	123.245	150.428	1.221	51.56	56.05	80	71	220.8564057	176.6485187	264.3930288	175.4890407	M7	-0.457142857	0.014285714	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.229	133	3	1	0.333333333	13qD1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr14	70566157	70566157	A	G	ENSMUST00000161069.7	1	ENSMUSG00000022096	missense	M/V	773	Hr	ENSMUST00000161069.7:c.2317A>G	ENSMUSP00000124816.1:p.Met773Val	H-2-Kb	9	8	4	RIHVAFAPV	RIHMAFAPV	NetMHC	90.85	86.69	0.954	43	0.279	436.557	470.023	1.077	86.69	90.85	152.8	204.6	787.2451613	668.5132201	871.4651012	912.5359861	M7	1.428571429	1.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.296	43	4	0	0	14qD2	chr14-53336808-123291781	3	2	1	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr14	16423715	16423715	CA	C	ENSMUST00000017629.11	1	ENSMUSG00000017485	FS	K/X	1426	Top2b	ENSMUST00000017629.11:c.4282del	ENSMUSP00000017629.4:p.Ser1428ValfsTer41	H-2-Kb	9	18	0	IFFHFLHIL	NA	NetMHCpan	37	NA	NA	36	0.306	73.405	NA	NA	NA	112.16	NA	37	NA	65.48020042	NA	81.32985537	M7	1.614285714	1.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.35	36	98	3	0.030612245	14qA2	chr14-7006943-52852156	3	2	1	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr14	20409093	20409093	G	A	ENSMUST00000056073.13	1	ENSMUSG00000039543	missense	T/I	734	Cfap70	ENSMUST00000056073.13:c.2201C>T	ENSMUSP00000056869.6:p.Thr734Ile	H-2-Kb	9	11	1	INVIAWTLL	TNVIAWTLL	NetMHCpan	95	296.1	3.117	88	0.25	184.149	351.857	1.911	278.03	122.12	296.1	95	435.622196	254.1616376	407.6148523	246.1784313	M7	2.357142857	2.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.253	88	0	0	NA	14qA3	chr14-7006943-52852156	3	2	1	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr13	112895502	112895502	T	C	ENSMUST00000022281.4	1	ENSMUSG00000016018	missense	H/R	592	Mtrex	ENSMUST00000022281.4:c.1775A>G	ENSMUSP00000022281.3:p.His592Arg	H-2-Kb	9	7	5	YQFQRYRAI	YQFQHYRAI	NetMHCpan	110.6	73.7	0.666	120	0.2	222.659	230.365	1.035	120.91	136.11	73.7	110.6	356.5414284	344.4371603	339.8208329	309.2074862	M7	-0.671428571	-0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.196	120	150	36	0.24	13qD2.2	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.893434449	sgMsh2	cell line
chr14	56804452	56804452	AT	A	ENSMUST00000173954.2	1	ENSMUSG00000040123	FS	N/X	123	Zmym5	ENSMUST00000173954.2:c.368del	ENSMUSP00000134057.1:p.Asn123MetfsTer18	H-2-Kb	9	8	4	STKMWISPL	NA	NetMHCpan	170.5	NA	NA	65	0.338	280.012	NA	NA	NA	207.45	NA	170.5	NA	447.8267173	NA	352.5737704	M7	0.428571429	0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.327	65	35	3	0.085714286	14qC3	chr14-53336808-123291781	3	2	1	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr14	56761852	56761852	A	C	ENSMUST00000022507.12	1	ENSMUSG00000021938	missense	L/V	316	Pspc1	ENSMUST00000022507.12:c.946T>G	ENSMUSP00000022507.5:p.Leu316Val	H-2-Kb	9	11	1	VMLMRQDLM	LMLMRQDLM	SMM	117.249	337.373	2.877	102	0.294	170.678	505.031	2.959	672.69	215.68	1505.6	463.1	337.3727491	117.2492302	325.2744865	125.6753201	M7	-0.014285714	0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.319	102	52	0	0	14qC3	chr14-53336808-123291781	3	2	1	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr14	65032312	65032312	A	G	ENSMUST00000043914.6	1	ENSMUSG00000021975	missense	I/V	484	Ints9	ENSMUST00000043914.6:c.1450A>G	ENSMUSP00000045552.5:p.Ile484Val	H-2-Kb	9	8	4	LNFVQVSKL	LNFIQVSKL	NetMHCpan	81.7	84.5	1.034	124	0.04	268.105	280.911	1.048	265.85	235.43	84.5	81.7	393.6497682	325.1696473	295.9715726	300.7807237	M7	0.971428571	1.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.045	124	20	1	0.05	14qD1	chr14-53336808-123291781	3	2	1	0.9	4.102505121	NA	1	0.205125256	sgMsh2	cell line
chr14	16423715	16423715	CA	C	ENSMUST00000017629.11	1	ENSMUSG00000017485	FS	K/X	1426	Top2b	ENSMUST00000017629.11:c.4282del	ENSMUSP00000017629.4:p.Ser1428ValfsTer41	H-2-Kb	9	37	0	TVMKKIPLL	NA	NetMHCpan	237	NA	NA	36	0.306	309.636	NA	NA	NA	303.59	NA	237	NA	328.178405	NA	315.6821313	M7	0.657142857	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.35	36	98	3	0.030612245	14qA2	chr14-7006943-52852156	3	2	1	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr14	52036009	52036009	A	G	ENSMUST00000214071.1	5	ENSMUSG00000044286	missense	M/T	34	Olfr221	ENSMUST00000214071.1:c.101T>C	ENSMUSP00000150675.1:p.Met34Thr	H-2-Kb	9	6	6	VVFLVTYAI	VVFLVMYAI	NetMHC	404.46	257.9	0.638	101	0.366	474.826	410.59	0.865	257.9	404.46	656.7	462	397.2921646	487.6519891	423.8869047	600.1364431	M7	2.157142857	2.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.337	101	0	0	NA	14qC2	chr14-7006943-52852156	3	2	1	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr14	120022532	120022532	A	G	ENSMUST00000058213.5	1	ENSMUSG00000044819	missense	F/L	88	Oxgr1	ENSMUST00000058213.5:c.262T>C	ENSMUSP00000055137.5:p.Phe88Leu	H-2-Kb	9	3	9	LLYLTSLPL	LLYLTSLPF	NetMHCpan	283.7	802.5	2.829	105	0.267	388.762	796.015	2.048	789.53	420.16	802.5	283.7	602.7122243	357.3633412	908.3432641	525.1096507	M7	1	1.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.271	105	0	0	NA	14qE4	chr14-53336808-123291781	3	2	1	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr13	112895502	112895502	T	C	ENSMUST00000022281.4	1	ENSMUSG00000016018	missense	H/R	592	Mtrex	ENSMUST00000022281.4:c.1775A>G	ENSMUSP00000022281.3:p.His592Arg	H-2-Kb	9	4	8	KSFYQFQRY	KSFYQFQHY	SMM	199.118	214.837	1.079	120	0.2	358.496	409.089	1.141	506.11	438.86	1456.1	1472	214.8374555	199.1177609	312.0685478	278.131386	M7	-1.214285714	-1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.196	120	150	36	0.24	13qD2.2	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.893434449	sgMsh2	cell line
chr14	16423715	16423715	CA	C	ENSMUST00000017629.11	1	ENSMUSG00000017485	FS	K/X	1426	Top2b	ENSMUST00000017629.11:c.4282del	ENSMUSP00000017629.4:p.Ser1428ValfsTer41	H-2-Kb	9	17	0	EIFFHFLHI	NA	NetMHCpan	110.4	NA	NA	36	0.306	230.886	NA	NA	NA	520.73	NA	110.4	NA	258.8868552	NA	202.8850284	M7	1.471428571	1.471428571	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.35	36	98	3	0.030612245	14qA2	chr14-7006943-52852156	3	2	1	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr14	36940490	36940490	C	T	ENSMUST00000067700.12	5	ENSMUSG00000058690	missense	A/T	246	Ccser2	ENSMUST00000067700.12:c.736G>A	ENSMUSP00000068550.6:p.Ala246Thr	H-2-Kb	9	6	6	HSFNRTVDL	HSFNRAVDL	SMMPMBEC	278.773	388.374	1.393	132	0.311	459.32	495.717	1.079	531.2	555.76	480.8	527.7	510.6343193	390.9399022	388.3738676	278.7725451	M7	-0.2	-0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.3	132	34	11	0.323529412	14qB	chr14-7006943-52852156	3	2	1	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr14	103177262	103177262	GA	G	ENSMUST00000159855.7	1	ENSMUSG00000033004	FS	F/X	2571	Mycbp2	ENSMUST00000159855.7:c.7713del	ENSMUSP00000124710.1:p.Gln2573ArgfsTer14	H-2-Kb	9	9	5	AFFPRNLKL	AFFPQEPKT	NetMHCpan	344.2	14946.7	43.424	165	0.273	446.4	7207.152	16.145	10007.64	580.16	14946.7	344.2	4406.664633	526.1505152	4001.750427	366.6485738	M7	-0.442857143	0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.272	165	0	0	NA	14qE2.3	chr14-53336808-123291781	3	2	1	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr15	84122566	84122566	A	G	ENSMUST00000019012.3	1	ENSMUSG00000018868	missense	L/P	72	Pnpla5	ENSMUST00000019012.3:c.215T>C	ENSMUSP00000019012.3:p.Leu72Pro	H-2-Db	9	5	7	FACSNLPDL	FACSNLLDL	SMMPMBEC	83.286	94.748	1.138	36	0.167	155.828	127.686	0.819	151.47	214.69	198.9	265.6	103.9010652	96.96611596	94.74798879	83.28561557	M7	0.1	0.714285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.182	36	0	0	NA	15qE2	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.829617702	sgMsh2	cell line
chr15	82641802	82641802	G	A	ENSMUST00000239057.1	NA	ENSMUSG00000118516	missense	P/S	58	AC118710.1	ENSMUST00000239057.1:c.172C>T	ENSMUSP00000158952.1:p.Pro58Ser	H-2-Kb	8	10	2	MSYSLYKL	MPYSLYKL	NetMHCpan	9.3	646.3	69.495	316	0.016	19.827	424.008	21.385	1132.87	14.26	646.3	9.3	168.5543635	25.39451951	201.7158386	28.03754606	M7	-0.071428571	-0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.022	316	0	0	NA	15qE1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.100283459	sgMsh2	cell line
chr15	76072463	76072463	A	G	ENSMUST00000100527.12	1	ENSMUSG00000002524	missense	F/L	157	Puf60	ENSMUST00000100527.12:c.469T>C	ENSMUSP00000098096.4:p.Phe157Leu	H-2-Kb	8	4	8	IRQAFAPL	IRQAFAPF	NetMHC	23.31	759.6	32.587	79	0.241	30.786	616.779	20.035	759.6	23.31	901.1	147.5	473.9581548	29.15680954	407.1364636	32.41455024	M7	0.085714286	0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.229	79	233	56	0.240343348	15qD3	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr15	85816891	85816891	A	G	ENSMUST00000064370.5	NA	ENSMUSG00000052496	missense	F/L	1615	Pkdrej	ENSMUST00000064370.5:c.4843T>C	ENSMUSP00000086352.2:p.Phe1615Leu	H-2-Kb	8	4	8	DSFYYNQL	DSFYYNQF	NetMHC	29.16	620.17	21.268	132	0.197	42.544	589.135	13.848	620.17	29.16	558.1	52.8	677.2359439	41.66198901	545.4312289	43.42501729	M7	-0.542857143	-0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.205	132	0	0	NA	15qE2	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.9344595	sgMsh2	cell line
chr15	85816500	85816500	A	G	ENSMUST00000064370.5	NA	ENSMUSG00000052496	missense	V/A	1745	Pkdrej	ENSMUST00000064370.5:c.5234T>C	ENSMUSP00000086352.2:p.Val1745Ala	H-2-Kb	8	5	7	VYHSYGAL	VYHSYGVL	NetMHC	51.44	205.07	3.987	276	0.272	81.16	186.929	2.303	205.07	51.44	153.8	90.3	195.3169797	82.93541077	178.5418375	79.38528349	M7	-0.2	-0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.268	276	0	0	NA	15qE2	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr15	94338749	94338749	A	C	ENSMUST00000035342.10	1	ENSMUSG00000022449	missense	S/A	797	Adamts20	ENSMUST00000035342.10:c.2389T>G	ENSMUSP00000036330.4:p.Ser797Ala	H-2-Kb	8	4	8	AVFEYSGA	AVFEYSGS	NetMHC	141.13	803.55	5.694	79	0.329	224.534	515.987	2.298	803.55	141.13	976.2	228.4	170.1139779	273.9933359	228.4230889	220.6683258	M7	0.4	0.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.335	79	0	0	NA	15qE3	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	2	1	sgMsh2	cell line
chr15	28229600	28229600	T	C	ENSMUST00000067048.7	5	ENSMUSG00000022262	missense	C/R	127	Dnah5	ENSMUST00000067048.7:c.379T>C	ENSMUSP00000069751.6:p.Cys127Arg	H-2-Kb	8	5	7	VALMGARV	VALMGACV	NetMHC	200.14	2369.26	11.838	133	0.068	318.504	1652.362	5.188	2369.26	200.14	1826.5	364.9	1478.223152	392.4099402	981.1603738	272.1071791	M7	1.228571429	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.078	133	0	0	NA	15qB1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.355550444	sgMsh2	cell line
chr15	98497551	98497551	TC	T	ENSMUST00000216822.1	5	ENSMUSG00000054036	FS	L/X	26	Olfr279	ENSMUST00000216822.1:c.81del	ENSMUSP00000150851.1:p.Phe28LeufsTer5	H-2-Kb	8	6	8	KHLGFLPL	KHLGFLPF	SMM	162.832	2646.915	16.255	85	0.165	248.471	2462.946	9.912	2758.87	327.53	1105.9	315.5	2646.91503	162.832091	2278.977303	181.4429089	M7	1.285714286	1.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.185	85	0	0	NA	15qF1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.843292719	sgMsh2	cell line
chr15	98835241	98835241	T	A	ENSMUST00000023741.15	5	ENSMUSG00000048154	missense	I/F	5478	Kmt2d	ENSMUST00000023741.15:c.16432A>T	ENSMUSP00000023741.8:p.Ile5478Phe	H-2-Kb	8	7	5	VIEYFGTI	VIEYIGTI	NetMHCpan	181	1731.1	9.564	77	0.221	399.806	7152.32	17.889	5739.39	457.05	1731.1	181	15694.22953	497.4391928	8565.249141	342.5626424	M7	0.842857143	0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.219	77	86	23	0.26744186	15qF1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.998276246	sgMsh2	cell line
chr15	76067353	76067353	C	T	ENSMUST00000002603.11	1	ENSMUSG00000022568	missense	R/H	128	Scrib	ENSMUST00000002603.11:c.383G>A	ENSMUSP00000002603.5:p.Arg128His	H-2-Kb	8	11	1	HSLAHLAL	RSLAHLAL	SMM	236.45	89.277	0.378	124	0.202	409.701	113.065	0.276	102.61	555.32	209.6	648.2	89.27708467	236.4503711	123.5207728	264.0827294	M7	1.571428571	1.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.222	124	64	17	0.265625	15qD3	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr15	76072463	76072463	A	G	ENSMUST00000100527.12	1	ENSMUSG00000002524	missense	F/L	157	Puf60	ENSMUST00000100527.12:c.469T>C	ENSMUSP00000098096.4:p.Phe157Leu	H-2-Kb	9	3	9	TIRQAFAPL	TIRQAFAPF	NetMHC	20.13	228.85	11.369	79	0.241	160.367	329.743	2.056	228.85	20.13	205.2	65.4	430.63567	255.3347944	470.1646793	271.8003427	M7	0.085714286	0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.229	79	233	56	0.240343348	15qD3	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr15	28378421	28378421	T	C	ENSMUST00000067048.7	5	ENSMUSG00000022262	missense	F/L	2968	Dnah5	ENSMUST00000067048.7:c.8902T>C	ENSMUSP00000069751.6:p.Phe2968Leu	H-2-Kb	9	3	9	QSLTRLASL	QSLTRLASF	NetMHC	48.02	238.26	4.962	115	0.322	133.757	254.704	1.904	238.26	48.02	526.7	122.6	244.4049514	144.9138851	265.0025177	153.196908	M7	1.028571429	1.028571429	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.313	115	0	0	NA	15qB1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr15	85816500	85816500	A	G	ENSMUST00000064370.5	NA	ENSMUSG00000052496	missense	V/A	1745	Pkdrej	ENSMUST00000064370.5:c.5234T>C	ENSMUSP00000086352.2:p.Val1745Ala	H-2-Kb	9	4	8	WVYHSYGAL	WVYHSYGVL	NetMHC	52.34	145.67	2.783	276	0.272	78.726	132.471	1.683	145.67	52.34	123	69.5	141.9416992	100.7186741	108.9557112	87.95286685	M7	-0.2	-0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.268	276	0	0	NA	15qE2	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr15	98835241	98835241	T	A	ENSMUST00000023741.15	5	ENSMUSG00000048154	missense	I/F	5478	Kmt2d	ENSMUST00000023741.15:c.16432A>T	ENSMUSP00000023741.8:p.Ile5478Phe	H-2-Kb	9	6	6	MVIEYFGTI	MVIEYIGTI	NetMHCpan	24.8	141	5.685	77	0.221	141.246	604.389	4.279	446.26	59.52	141	24.8	873.1925064	246.6664026	762.5178243	222.9718309	M7	0.842857143	1.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.219	77	86	23	0.26744186	15qF1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.998276246	sgMsh2	cell line
chr15	56668003	56668003	A	G	ENSMUST00000050544.7	1	ENSMUSG00000022367	missense	Y/H	439	Has2	ENSMUST00000050544.7:c.1315T>C	ENSMUSP00000062212.7:p.Tyr439His	H-2-Kb	9	11	1	HSVLYMSSL	YSVLYMSSL	NetMHC	79.13	28.91	0.365	180	0.172	205.3	111.439	0.543	28.91	79.13	30.9	92.1	203.287184	318.5004131	191.9773533	324.526376	M7	1.542857143	1.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.187	180	7	2	0.285714286	15qD1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.852409397	sgMsh2	cell line
chr15	28411635	28411635	G	A	ENSMUST00000067048.7	5	ENSMUSG00000022262	missense	V/M	3717	Dnah5	ENSMUST00000067048.7:c.11149G>A	ENSMUSP00000069751.6:p.Val3717Met	H-2-Kb	9	3	9	SIIDFTVTM	SIIDFTVTV	NetMHCpan	67.6	186	2.751	82	0.195	217.133	356.975	1.644	214.94	142.45	186	67.6	499.0108631	291.8166046	562.6651281	340.6042008	M7	1.214285714	1.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.208	82	0	0	NA	15qB1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.948134517	sgMsh2	cell line
chr15	30775195	30775195	A	T	ENSMUST00000081728.6	1	ENSMUSG00000022240	missense	Q/H	571	Ctnnd2	ENSMUST00000081728.6:c.1713A>T	ENSMUSP00000080427.5:p.Gln571His	H-2-Kb	9	7	5	AAYLHHLCF	AAYLQHLCF	SMMPMBEC	102.861	339.039	3.296	81	0.173	127.845	452.272	3.538	697.87	200.55	560.9	137.9	343.6449768	117.790428	339.0392667	102.8608242	M7	0.742857143	0.742857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.166	81	0	0	NA	15qB2	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.756684278	sgMsh2	cell line
chr15	74839366	74839366	T	G	ENSMUST00000170259.2	1	ENSMUSG00000075604	missense	K/N	154	Cyp11b1	ENSMUST00000170259.2:c.462A>C	ENSMUSP00000127888.1:p.Lys154Asn	H-2-Kb	9	11	1	NAVQKFVPL	KAVQKFVPL	NetMHCpan	220.9	59.7	0.27	121	0.264	302.852	117.78	0.389	61.28	241.58	59.7	220.9	209.947158	454.0566075	174.2809827	364.1245828	M7	0.857142857	0.857142857	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.259	121	0	0	NA	15qD3	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr15	56668003	56668003	A	G	ENSMUST00000050544.7	1	ENSMUSG00000022367	missense	Y/H	439	Has2	ENSMUST00000050544.7:c.1315T>C	ENSMUSP00000062212.7:p.Tyr439His	H-2-Kb	9	6	6	VFMSLHSVL	VFMSLYSVL	SMM	239.392	68.408	0.286	180	0.172	258.916	80.373	0.31	102.48	279.46	73.6	239.7	68.40848933	239.3922023	87.14651012	278.131386	M7	1.271428571	1.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.187	180	7	2	0.285714286	15qD1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.852409397	sgMsh2	cell line
chr15	10988924	10988924	T	C	ENSMUST00000070877.6	1	ENSMUSG00000022244	missense	F/L	239	Amacr	ENSMUST00000070877.6:c.715T>C	ENSMUSP00000066915.5:p.Phe239Leu	H-2-Kb	9	7	5	IEPQLYALL	IEPQFYALL	NetMHC	319.08	19.25	0.06	76	0.211	409.155	102.272	0.25	19.25	319.08	89.7	836.6	114.8444468	421.8033261	121.6886295	396.5062159	M7	0.971428571	0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.216	76	22	6	0.272727273	15qA1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.984601229	sgMsh2	cell line
chr15	58889378	58889378	T	G	ENSMUST00000036904.6	1	ENSMUSG00000037075	missense	L/R	22	Rnf139	ENSMUST00000036904.6:c.65T>G	ENSMUSP00000046467.6:p.Leu22Arg	H-2-Kb	9	7	5	VWAAREVAL	VWAALEVAL	SMM	127.09	314.855	2.477	62	0.194	252.097	659.527	2.616	830.12	321.7	1526	1179.2	314.8545691	127.0895963	488.9337312	182.4945923	M7	0.771428571	0.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.186	62	20	6	0.3	15qD1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.847851058	sgMsh2	cell line
chr15	60823463	60823463	A	T	ENSMUST00000100635.4	1	ENSMUSG00000072568	missense	L/M	145	Lratd2	ENSMUST00000100635.4:c.433T>A	ENSMUSP00000098200.3:p.Leu145Met	H-2-Kb	9	8	4	VVHMHRLEV	VVHLHRLEV	NetMHC	414.3	407.58	0.984	69	0.29	438.755	420.67	0.959	407.58	414.3	821.9	739.1	359.0128555	432.6233939	433.7604991	444.8872915	M7	-0.642857143	0.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.302	69	16	5	0.3125	15qD1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr15	99993387	99993387	A	G	ENSMUST00000100206.3	1	ENSMUSG00000023025	missense	N/S	231	Larp4	ENSMUST00000100206.3:c.692A>G	ENSMUSP00000097780.2:p.Asn231Ser	H-2-Db	9	8	4	FAHSSNWYI	FAHNSNWYI	NetMHCpan	192.8	342.1	1.774	187	0.182	266.311	425.042	1.596	583.28	237.76	342.1	192.8	386.0290606	294.86281	464.0555809	344.8021776	M7	-0.857142857	-0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.193	187	65	15	0.230769231	15qF1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.879759432	sgMsh2	cell line
chr16	36615278	36615278	A	G	ENSMUST00000089620.10	1	ENSMUSG00000022901	missense	L/P	259	Cd86	ENSMUST00000089620.10:c.776T>C	ENSMUSP00000087047.4:p.Leu259Pro	H-2-Db	9	4	8	VALLLVMPL	VALLLVMLL	SMM	119.845	386.029	3.221	94	0.266	259.265	1602.2	6.18	2784.09	391.89	5782.3	529.9	386.0290606	119.8450221	420.3102682	126.639737	M7	2.814285714	3.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.264	94	0	0	NA	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr16	37818952	37818952	T	C	ENSMUST00000114763.2	1	ENSMUSG00000022816	missense	Y/H	71	Fstl1	ENSMUST00000114763.2:c.211T>C	ENSMUSP00000110411.2:p.Tyr71His	H-2-Db	9	9	3	KTHLNHCEL	KTYLNHCEL	NetMHCpan	269.5	150.1	0.557	125	0.136	479.168	336.922	0.703	635.98	663.95	150.1	269.5	368.6548909	458.7963984	305.1897897	499.53969	M7	-0.471428571	-0.471428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.157	125	0	0	NA	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	0.715659227	sgMsh2	cell line
chr16	8409720	8409720	A	C	ENSMUST00000023400.3	1	ENSMUSG00000022715	missense	S/A	160	Tmem114	ENSMUST00000023400.3:c.478T>G	ENSMUSP00000023400.2:p.Ser160Ala	H-2-Kb	8	6	6	IYIAYAAV	IYIAYSAV	NetMHC	22.63	53.26	2.354	60	0.117	57.045	111.931	1.962	53.26	22.63	96	57.5	127.8615603	56.59003988	137.6385219	57.90819124	M7	1.642857143	1.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.148	60	0	0	NA	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	0.674634175	sgMsh2	cell line
chr16	32959460	32959460	T	C	ENSMUST00000135193.8	5	ENSMUSG00000022801	missense	C/R	236	Lrch3	ENSMUST00000135193.8:c.706T>C	ENSMUSP00000130708.1:p.Cys236Arg	H-2-Kb	8	8	4	IPVRYRNL	IPVCYRNL	SMM	25.395	50.089	1.972	99	0.202	26.67	75.164	2.818	92.42	26.87	346.6	278.9	50.08872766	25.39451951	57.90819124	26.4691503	M7	-1.057142857	-0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.202	99	35	5	0.142857143	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	0.920784483	sgMsh2	cell line
chr16	44488543	44488543	G	A	ENSMUST00000114634.2	1	ENSMUSG00000022687	missense	P/S	869	Boc	ENSMUST00000114634.2:c.2605C>T	ENSMUSP00000110281.2:p.Pro869Ser	H-2-Kb	8	7	5	VTFISFCL	VTFIPFCL	NetMHCpan	30.7	45.3	1.476	51	0.196	56.284	73.896	1.313	58.72	48.78	45.3	30.7	89.07175307	63.788149	101.5640475	72.56713881	M7	2.128571429	2.185714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.18	51	0	0	NA	16qB4	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	0.820501024	sgMsh2	cell line
chr15	99699089	99699089	T	C	ENSMUST00000023758.8	1	ENSMUSG00000023017	missense	I/T	511	Asic1	ENSMUST00000023758.8:c.1532T>C	ENSMUSP00000023758.7:p.Ile511Thr	H-2-Kb	8	5	7	MTYAANTL	MTYAANIL	NetMHCpan	73.5	190.6	2.593	120	0.225	97.724	246.904	2.527	408.38	114.4	190.6	73.5	185.6692572	81.04757034	303.2075422	116.0753495	M7	0.171428571	0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.231	120	6	2	0.333333333	15qF1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr16	64926197	64926197	G	A	ENSMUST00000063076.5	1	ENSMUSG00000050783	missense	S/F	244	Htr1f	ENSMUST00000063076.5:c.731C>T	ENSMUSP00000063136.4:p.Ser244Phe	H-2-Kb	8	7	5	LVSTFYML	LVSTSYML	NetMHCpan	110.1	3406	30.936	162	0.247	233.792	5453.403	23.326	4857.02	174.67	3406	110.1	6049.785825	318.2291802	6349.506908	292.9139126	M7	1.414285714	1.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.256	162	0	0	NA	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr16	63773391	63773391	C	CA	ENSMUST00000064405.7	1	ENSMUSG00000052504	FS	L/FX	111	Epha3	ENSMUST00000064405.7:c.332dup	ENSMUSP00000066554.6:p.Leu111PhefsTer11	H-2-Kb	8	9	3	IPFGFGDL	NA	SMMPMBEC	51.968	NA	NA	81	0.198	131.126	NA	NA	NA	209.44	NA	512	NA	52.8128981	NA	51.96847826	M7	0.5	0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.209	81	0	0	NA	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	0.952692856	sgMsh2	cell line
chr16	44488543	44488543	G	A	ENSMUST00000114634.2	1	ENSMUSG00000022687	missense	P/S	869	Boc	ENSMUST00000114634.2:c.2605C>T	ENSMUSP00000110281.2:p.Pro869Ser	H-2-Kb	8	5	7	IIVTFISF	IIVTFIPF	NetMHC	210.94	98.54	0.467	51	0.196	229.301	115.038	0.502	98.54	210.94	114.8	217.2	158.7596015	327.8989304	115.2762924	241.4015198	M7	2.471428571	2.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.18	51	0	0	NA	16qB4	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	0.820501024	sgMsh2	cell line
chr16	85899765	85899765	T	G	ENSMUST00000023611.6	1	ENSMUSG00000022894	missense	K/T	168	Adamts5	ENSMUST00000023611.6:c.503A>C	ENSMUSP00000023611.5:p.Lys168Thr	H-2-Kb	8	6	6	ARYTLTPL	ARYTLKPL	SMMPMBEC	216.641	397.869	1.837	70	0.214	237.11	719.543	3.035	991.64	248.93	1750.2	575.9	447.4453509	225.2890066	397.8689062	216.6406749	M7	-0.171428571	-0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	70	0	0	NA	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr16	8409720	8409720	A	C	ENSMUST00000023400.3	1	ENSMUSG00000022715	missense	S/A	160	Tmem114	ENSMUST00000023400.3:c.478T>G	ENSMUSP00000023400.2:p.Ser160Ala	H-2-Kb	8	8	4	IAYAAVAF	IAYSAVAF	NetMHCpan	156.4	150.8	0.964	60	0.117	363.079	335.015	0.923	203.65	252.2	150.8	156.4	510.1994663	483.8825938	466.380088	473.9581548	M7	1.842857143	2.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.148	60	0	0	NA	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	0.674634175	sgMsh2	cell line
chr16	45980623	45980623	T	C	ENSMUST00000130481.1	1	ENSMUSG00000087141	missense	I/M	79	Plcxd2	ENSMUST00000130481.1:c.237A>G	ENSMUSP00000114852.1:p.Ile79Met	H-2-Kb	8	9	3	AVMRLARI	AVIRLARI	NetMHCpan	236.5	301.6	1.275	108	0.241	350.618	337.313	0.962	234.74	252.76	301.6	236.5	526.9143181	779.3633877	373.0267702	448.476819	M7	1.028571429	1.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.24	108	7	1	0.142857143	16qB5	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr16	56732892	56732892	T	A	ENSMUST00000023437.4	1	ENSMUSG00000022755	missense	D/V	614	Adgrg7	ENSMUST00000023437.4:c.1841A>T	ENSMUSP00000023437.4:p.Asp614Val	H-2-Kb	8	10	2	NVYARSPL	NDYARSPL	NetMHCpan	265.7	4526.8	17.037	133	0.278	295.064	3044.506	10.318	10998.42	291.08	4526.8	265.7	1562.21211	332.4604589	1451.242539	299.0473787	M7	0.228571429	0.228571429	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.277	133	0	0	NA	16qC1.1	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr15	101568342	101568342	T	C	ENSMUST00000042957.5	1	ENSMUSG00000022986	missense	M/V	371	Krt75	ENSMUST00000042957.5:c.1111A>G	ENSMUSP00000036246.5:p.Met371Val	H-2-Kb	8	11	1	VNRMIQRL	MNRMIQRL	NetMHCpan	246.9	571	2.313	106	0.226	362.208	890.061	2.457	1363.82	316.34	571	246.9	915.6721386	429.2793522	864.4502416	408.0750101	M7	-0.828571429	-0.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.229	106	0	0	NA	15qF2	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr15	99993387	99993387	A	G	ENSMUST00000100206.3	1	ENSMUSG00000023025	missense	N/S	231	Larp4	ENSMUST00000100206.3:c.692A>G	ENSMUSP00000097780.2:p.Asn231Ser	H-2-Kb	8	4	8	ISCEFAHS	ISCEFAHN	SMM	44.745	39.061	0.873	187	0.182	193.959	1659.295	8.555	3279.35	335.83	6689.5	1646.1	39.06069803	44.74453509	39.24099402	52.08827797	M7	-0.171428571	0.585714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.193	187	65	15	0.230769231	15qF1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.879759432	sgMsh2	cell line
chr16	37522850	37522850	A	G	ENSMUST00000023525.8	1	ENSMUSG00000022828	missense	I/T	184	Gtf2e1	ENSMUST00000023525.8:c.551T>C	ENSMUSP00000023525.8:p.Ile184Thr	H-2-Kb	8	11	1	TEPIYALL	IEPIYALL	SMM	251.038	89.689	0.357	210	0.033	457.392	101.951	0.223	111.06	658.49	485.4	1761.3	89.68916897	251.0383085	92.84104069	256.2949211	M7	1.071428571	1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.031	210	73	2	0.02739726	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	0.14130851	sgMsh2	cell line
chr16	44488543	44488543	G	A	ENSMUST00000114634.2	1	ENSMUSG00000022687	missense	P/S	869	Boc	ENSMUST00000114634.2:c.2605C>T	ENSMUSP00000110281.2:p.Pro869Ser	H-2-Kb	8	10	2	ISFCLWRA	IPFCLWRA	SMMPMBEC	286.246	2059.397	7.194	51	0.196	448.016	4103.472	9.159	14967.77	2420.96	6010.4	565.1	2196.544469	330.9329418	2059.396641	286.246378	M7	0.671428571	1.057142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.18	51	0	0	NA	16qB4	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	0.820501024	sgMsh2	cell line
chr16	32959460	32959460	T	C	ENSMUST00000135193.8	5	ENSMUSG00000022801	missense	C/R	236	Lrch3	ENSMUST00000135193.8:c.706T>C	ENSMUSP00000130708.1:p.Cys236Arg	H-2-Kb	9	7	5	VIPVRYRNL	VIPVCYRNL	NetMHC	4.32	5.83	1.35	99	0.202	39.398	84.597	2.147	5.83	4.32	35.5	30.7	133.6934098	48.0961153	179.9906727	63.8631006	M7	-1.057142857	0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.202	99	35	5	0.142857143	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	0.920784483	sgMsh2	cell line
chr16	8409720	8409720	A	C	ENSMUST00000023400.3	1	ENSMUSG00000022715	missense	S/A	160	Tmem114	ENSMUST00000023400.3:c.478T>G	ENSMUSP00000023400.2:p.Ser160Ala	H-2-Kb	9	5	7	SIYIAYAAV	SIYIAYSAV	NetMHC	5.3	8.65	1.632	60	0.117	43.053	48.149	1.118	8.65	5.3	24.5	19.1	71.79761204	67.00543022	97.77999259	82.65135921	M7	1.642857143	1.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.148	60	0	0	NA	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	0.674634175	sgMsh2	cell line
chr16	36615278	36615278	A	G	ENSMUST00000089620.10	1	ENSMUSG00000022901	missense	L/P	259	Cd86	ENSMUST00000089620.10:c.776T>C	ENSMUSP00000087047.4:p.Leu259Pro	H-2-Kb	9	4	8	VALLLVMPL	VALLLVMLL	NetMHC	63.11	150.8	2.389	94	0.266	124.012	228.193	1.84	150.8	63.11	354.9	84.3	208.5018919	163.7231154	247.8848587	177.9303365	M7	2.814285714	3.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.264	94	0	0	NA	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr16	32959460	32959460	T	C	ENSMUST00000135193.8	5	ENSMUSG00000022801	missense	C/R	236	Lrch3	ENSMUST00000135193.8:c.706T>C	ENSMUSP00000130708.1:p.Cys236Arg	H-2-Kb	9	10	2	VRYRNLRHL	VCYRNLRHL	NetMHC	134.72	74.69	0.554	99	0.202	264.699	138.58	0.524	74.69	134.72	91.7	491.7	220.8564057	228.6177783	185.4598909	300.7807237	M7	-1.342857143	-1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.202	99	35	5	0.142857143	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	0.920784483	sgMsh2	cell line
chr16	32847841	32847841	T	A	ENSMUST00000089684.9	1	ENSMUSG00000035629	missense	K/I	152	Rubcn	ENSMUST00000089684.9:c.455A>T	ENSMUSP00000087114.3:p.Lys152Ile	H-2-Kb	9	11	1	IFYTETAFL	KFYTETAFL	NetMHCpan	99.5	326.2	3.278	26	0.269	205.341	636.187	3.098	596.12	150.6	326.2	99.5	676.2542383	260.0818226	802.1396792	274.3152803	M7	0.314285714	0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.279	26	16	3	0.1875	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr16	33975874	33975874	A	G	ENSMUST00000076810.11	5	ENSMUSG00000061751	missense	L/P	2846	Kalrn	ENSMUST00000076810.11:c.8537T>C	ENSMUSP00000076088.5:p.Leu2846Pro	H-2-Kb	9	6	6	LTYVMPSGV	LTYVMLSGV	NetMHC	188	49.73	0.265	117	0.282	325.494	137.237	0.422	49.73	188	141.7	338.3	132.7730709	312.6871254	185.033345	441.8247089	M7	0.885714286	0.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.277	117	1	1	1	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr16	45980623	45980623	T	C	ENSMUST00000130481.1	1	ENSMUSG00000087141	missense	I/M	79	Plcxd2	ENSMUST00000130481.1:c.237A>G	ENSMUSP00000114852.1:p.Ile79Met	H-2-Kb	9	8	4	QAVMRLARI	QAVIRLARI	NetMHC	233.36	309.48	1.326	108	0.241	370.477	381.287	1.029	309.48	233.36	1087.9	791.3	388.2486909	377.6678362	374.3260056	363.2871195	M7	1.028571429	1.028571429	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.24	108	7	1	0.142857143	16qB5	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr16	59216355	59216355	TA	T	ENSMUST00000214186.1	5	ENSMUSG00000074996	FS	L/X	86	Olfr199	ENSMUST00000214186.1:c.257del	ENSMUSP00000150643.1:p.Leu86TyrfsTer7	H-2-Kb	9	6	6	MLLNFYLQI	MLLNFLSTN	NetMHCpan	124.6	10572.2	84.849	268	0.261	270.035	7718.752	28.584	13758.05	239.29	10572.2	124.6	4865.304206	443.7210173	3135.089908	300.7807237	M7	0.942857143	1.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.261	268	0	0	NA	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr16	56732892	56732892	T	A	ENSMUST00000023437.4	1	ENSMUSG00000022755	missense	D/V	614	Adgrg7	ENSMUST00000023437.4:c.1841A>T	ENSMUSP00000023437.4:p.Asp614Val	H-2-Kb	9	10	2	NVYARSPLL	NDYARSPLL	SMM	164.101	645.818	3.936	133	0.278	201.99	2229.315	11.037	7330.33	282.68	3720.3	170.5	645.8177839	164.1005362	738.3291242	233.4801695	M7	0.171428571	0.228571429	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.277	133	0	0	NA	16qC1.1	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr16	64926197	64926197	G	A	ENSMUST00000063076.5	1	ENSMUSG00000050783	missense	S/F	244	Htr1f	ENSMUST00000063076.5:c.731C>T	ENSMUSP00000063136.4:p.Ser244Phe	H-2-Kb	9	10	2	TFYMLEKSL	TSYMLEKSL	NetMHCpan	295.4	99.7	0.338	162	0.247	314.513	130.789	0.416	100.05	304.5	99.7	295.4	180.3474475	333.5108752	161.5288124	324.526376	M7	-1.27E-16	-1.27E-16	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.256	162	0	0	NA	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr16	44488543	44488543	G	A	ENSMUST00000114634.2	1	ENSMUSG00000022687	missense	P/S	869	Boc	ENSMUST00000114634.2:c.2605C>T	ENSMUSP00000110281.2:p.Pro869Ser	H-2-Kb	9	7	5	VTFISFCLW	VTFIPFCLW	SMMPMBEC	254.83	300.781	1.18	51	0.196	360.434	355.033	0.985	342.69	342.33	859.5	564.4	367.3753391	378.5384504	300.7807237	254.8296748	M7	2.1	2.185714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.18	51	0	0	NA	16qB4	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	0.820501024	sgMsh2	cell line
chr16	17342352	17342352	T	C	ENSMUST00000023450.14	1	ENSMUSG00000022766	missense	V/A	371	Serpind1	ENSMUST00000023450.14:c.1112T>C	ENSMUSP00000023450.6:p.Val371Ala	H-2-Kb	9	5	7	TNRTREALL	TNRTREVLL	SMMPMBEC	176.299	238.919	1.355	94	0.245	291.863	432.697	1.483	594.93	396.18	2092.8	1411.6	270.4643321	187.5469475	238.9186213	176.2990613	M7	-0.542857143	-0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.256	94	6	3	0.5	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr16	45980623	45980623	T	C	ENSMUST00000130481.1	1	ENSMUSG00000087141	missense	I/M	79	Plcxd2	ENSMUST00000130481.1:c.237A>G	ENSMUSP00000114852.1:p.Ile79Met	H-2-Kb	9	10	2	VMRLARISL	VIRLARISL	SMM	265.528	594.443	2.239	108	0.241	421.74	853.84	2.025	838.22	423.48	1367.8	683.8	594.4427026	265.5278017	869.4607871	420.0006862	M7	0.585714286	1.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.24	108	7	1	0.142857143	16qB5	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr16	43982105	43982105	A	G	ENSMUST00000036174.9	1	ENSMUSG00000036292	missense	F/L	443	Gramd1c	ENSMUST00000036174.9:c.1327T>C	ENSMUSP00000036739.3:p.Phe443Leu	H-2-Kb	9	5	7	IMLQKTLDL	IMLQKTFDL	SMMPMBEC	261.367	256.596	0.982	151	0.258	403.129	347.19	0.861	400.54	478.08	556.5	644	293.8393807	328.178405	256.5960697	261.3665468	M7	-0.028571429	0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.256	151	6	1	0.166666667	16qB4	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr17	56632320	56632320	T	G	ENSMUST00000112979.3	1	ENSMUSG00000040828	missense	F/V	50	Catsperd	ENSMUST00000112979.3:c.148T>G	ENSMUSP00000108603.2:p.Phe50Val	H-2-Db	9	5	7	YAFPNTVVL	YAFPNTFVL	NetMHCpan	9.1	7.6	0.835	135	0.185	33.615	30.922	0.92	12.57	10.27	7.6	9.1	49.27424743	62.03260224	49.83907806	56.96000254	M7	1.314285714	1.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.202	135	0	0	NA	17qD	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.920784483	sgMsh2	cell line
chr17	3453370	3453370	T	G	ENSMUST00000072156.6	1	ENSMUSG00000023800	missense	F/V	941	Tiam2	ENSMUST00000072156.6:c.2821T>G	ENSMUSP00000072020.6:p.Phe941Val	H-2-Db	9	4	8	HQHLNRIVI	HQHLNRIFI	NetMHC	52.68	34.23	0.65	244	0.213	177.453	103.995	0.586	34.23	52.68	102.4	240	105.5893217	162.7871051	145.4018727	192.1188596	M7	0.828571429	0.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.216	244	51	8	0.156862745	17qA1	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.984601229	sgMsh2	cell line
chr17	22548528	22548528	T	C	ENSMUST00000092491.6	1	ENSMUSG00000095093	missense	T/A	663	Vmn2r111	ENSMUST00000092491.6:c.1987A>G	ENSMUSP00000090148.5:p.Thr663Ala	H-2-Db	9	10	2	FAVALSTVL	FTVALSTVL	NetMHC	76.29	1230.36	16.127	458	0.02	221.844	1501.879	6.77	1230.36	76.29	2015.7	214.3	1692.855933	260.3874209	1310.901318	229.387633	M7	2.328571429	2.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.023	458	0	0	NA	17qA3.3	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.104841798	sgMsh2	cell line
chr17	25883786	25883786	C	T	ENSMUST00000167626.7	1	ENSMUSG00000025730	missense	G/S	230	Rab40c	ENSMUST00000167626.7:c.688G>A	ENSMUSP00000127546.1:p.Gly230Ser	H-2-Db	9	6	6	FSMANSMNA	FSMANGMNA	NetMHCpan	175.5	176.2	1.004	87	0.287	311.538	315.827	1.014	312.78	299.02	176.2	175.5	318.8746537	324.05595	346.3937122	358.5667377	M7	-0.057142857	0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.264	87	32	6	0.1875	17qA3.3	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr17	19812337	19812337	C	A	ENSMUST00000172203.1	5	ENSMUSG00000091771	missense	T/N	791	Vmn2r103	ENSMUST00000172203.1:c.2372C>A	ENSMUSP00000126756.1:p.Thr791Asn	H-2-Db	9	7	5	CVWVNFLPV	CVWVTFLPV	SMM	162.787	7899.871	48.529	273	0.194	365.39	9389.201	25.696	10878.53	567.26	12089.5	717.2	7899.871007	162.7871051	7154.346992	163.5196692	M7	1.285714286	1.871428571	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.205	273	0	0	NA	17qA3.2	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.9344595	sgMsh2	cell line
chr17	20375135	20375135	CT	C	ENSMUST00000042090.7	5	ENSMUSG00000056910	FS	L/X	650	Vmn2r107	ENSMUST00000042090.7:c.1950del	ENSMUSP00000048706.6:p.Gln651SerfsTer36	H-2-Kb	8	31	0	LSLWFLPL	NA	NetMHC	7.32	NA	NA	482	0.023	11.657	NA	NA	NA	7.32	NA	9	NA	14.54587999	NA	14.31330745	M7	1.557142857	1.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.024	482	0	0	NA	17qA3.2	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.109400137	sgMsh2	cell line
chr17	38305350	38305350	A	G	ENSMUST00000213505.1	5	ENSMUSG00000054940	missense	M/T	37	Olfr137	ENSMUST00000213505.1:c.110T>C	ENSMUSP00000150173.1:p.Met37Thr	H-2-Kb	8	5	7	VILIFYTM	VILIFYMM	NetMHC	12.13	9.97	0.822	138	0.181	29.542	31.132	1.054	9.97	12.13	64.9	28.2	27.21071791	30.88445912	35.05419514	39.33145385	M7	2.214285714	2.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.187	138	0	0	NA	17qB1	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.852409397	sgMsh2	cell line
chr17	20735576	20735576	C	A	ENSMUST00000232943.1	NA	ENSMUSG00000067951	missense	T/N	129	Vmn1r227	ENSMUST00000232943.1:c.386C>A	ENSMUSP00000156554.1:p.Thr129Asn	H-2-Kb	8	10	2	KNTKFVNL	KTTKFVNL	NetMHCpan	33.3	45	1.351	184	0.027	55.627	55.137	0.991	43.61	38.52	45	33.3	65.27396586	72.73442335	72.73442335	90.7277206	M7	-0.114285714	-0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.036	184	0	0	NA	17qA3.2	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.164100205	sgMsh2	cell line
chr17	38305350	38305350	A	G	ENSMUST00000213505.1	5	ENSMUSG00000054940	missense	M/T	37	Olfr137	ENSMUST00000213505.1:c.110T>C	ENSMUSP00000150173.1:p.Met37Thr	H-2-Kb	8	8	4	IFYTMTLM	IFYMMTLM	NetMHC	61.09	51.23	0.839	138	0.181	94.841	92.954	0.98	51.23	61.09	70.1	82.1	124.9510759	107.5820957	115.8083836	119.0529058	M7	1.1	1.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.187	138	0	0	NA	17qB1	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.852409397	sgMsh2	cell line
chr17	9668705	9668705	G	T	ENSMUST00000057190.3	NA	ENSMUSG00000046173	missense	L/I	306	Pabpc6	ENSMUST00000057190.3:c.916C>A	ENSMUSP00000050792.2:p.Leu306Ile	H-2-Kb	8	9	3	VNIYVKNL	VNLYVKNL	NetMHCpan	47.6	54.5	1.145	202	0.035	113.088	100.349	0.887	70.46	74.91	54.5	47.6	130.2386842	151.2655393	163.9607892	179.7794304	M7	0.042857143	0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.041	202	0	0	NA	17qA1	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.1868919	sgMsh2	cell line
chr17	19812337	19812337	C	A	ENSMUST00000172203.1	5	ENSMUSG00000091771	missense	T/N	791	Vmn2r103	ENSMUST00000172203.1:c.2372C>A	ENSMUSP00000126756.1:p.Thr791Asn	H-2-Kb	8	8	4	VWVNFLPV	VWVTFLPV	NetMHC	75.65	99.44	1.314	273	0.194	162.833	141.568	0.869	99.44	75.65	190.6	182	146.1302072	162.4575876	137.0061303	163.2074578	M7	1.285714286	1.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.205	273	0	0	NA	17qA3.2	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.9344595	sgMsh2	cell line
chr17	18277423	18277423	T	A	ENSMUST00000172190.3	5	ENSMUSG00000090417	missense	D/V	29	Vmn2r94	ENSMUST00000172190.3:c.86A>T	ENSMUSP00000126386.2:p.Asp29Val	H-2-Kb	8	11	1	VNYVQYNF	DNYVQYNF	NetMHCpan	60.6	3963.3	65.401	94	0.191	102.319	3678.76	35.954	5001.49	77.07	3963.3	60.6	2258.083514	127.5674869	3394.220093	183.9670312	M7	-0.871428571	-0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.202	94	0	0	NA	17qA3.2	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.920784483	sgMsh2	cell line
chr17	20375135	20375135	CT	C	ENSMUST00000042090.7	5	ENSMUSG00000056910	FS	L/X	650	Vmn2r107	ENSMUST00000042090.7:c.1950del	ENSMUSP00000048706.6:p.Gln651SerfsTer36	H-2-Kb	8	19	0	LSLWLLPL	NA	NetMHCpan	87.4	NA	NA	482	0.023	146.953	NA	NA	NA	141.24	NA	87.4	NA	153.3698525	NA	152.6651821	M7	1.7	1.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.024	482	0	0	NA	17qA3.2	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.109400137	sgMsh2	cell line
chr17	38305350	38305350	A	G	ENSMUST00000213505.1	5	ENSMUSG00000054940	missense	M/T	37	Olfr137	ENSMUST00000213505.1:c.110T>C	ENSMUSP00000150173.1:p.Met37Thr	H-2-Kb	8	7	5	LIFYTMTL	LIFYMMTL	NetMHCpan	77.2	52.6	0.681	138	0.181	222.743	93.328	0.419	65.39	165.11	52.6	77.2	122.3883275	309.5565516	121.2662646	280.3754606	M7	1.471428571	1.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.187	138	0	0	NA	17qB1	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.852409397	sgMsh2	cell line
chr17	13888945	13888945	A	G	ENSMUST00000139666.7	2	ENSMUSG00000068036	missense	M/V	1592	Afdn	ENSMUST00000139666.7:c.4774A>G	ENSMUSP00000118318.1:p.Met1592Val	H-2-Kb	8	7	5	TMLIVQRL	TMLIMQRL	NetMHCpan	274.8	120.7	0.439	177	0.232	415.108	263.019	0.634	177.91	359.52	120.7	274.8	348.1288376	470.6954498	373.0267702	558.1359543	M7	1.457142857	1.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.24	177	164	36	0.219512195	17qA1	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr17	25883786	25883786	C	T	ENSMUST00000167626.7	1	ENSMUSG00000025730	missense	G/S	230	Rab40c	ENSMUST00000167626.7:c.688G>A	ENSMUSP00000127546.1:p.Gly230Ser	H-2-Kb	8	4	8	KSFSMANS	KSFSMANG	SMM	98.116	103.214	1.052	87	0.287	451.96	949.348	2.101	1766.95	771.87	2713.8	1479.8	103.2143305	98.11603738	131.7467771	132.0504848	M7	0.085714286	0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.264	87	32	6	0.1875	17qA3.3	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr17	20540614	20540614	G	T	ENSMUST00000167093.2	5	ENSMUSG00000090572	missense	P/H	827	Vmn2r109	ENSMUST00000167093.2:c.2480C>A	ENSMUSP00000132641.1:p.Pro827His	H-2-Kb	8	5	7	LGFIFAHK	LGFIFAPK	SMMPMBEC	60.22	40.902	0.679	191	0.204	399.253	288.671	0.723	784.23	932.66	508.2	692.4	69.1416915	106.106014	40.90157201	60.21989584	M7	0.628571429	1.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.205	191	0	0	NA	17qA3.2	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.9344595	sgMsh2	cell line
chr17	38305350	38305350	A	G	ENSMUST00000213505.1	5	ENSMUSG00000054940	missense	M/T	37	Olfr137	ENSMUST00000213505.1:c.110T>C	ENSMUSP00000150173.1:p.Met37Thr	H-2-Kb	9	5	7	VILIFYTMT	VILIFYMMT	NetMHC	79.78	86.29	1.082	138	0.181	86.781	92.419	1.065	86.29	79.78	1117.9	409.6	94.21281926	91.85652252	90.62541326	81.70525693	M7	1.471428571	2.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.187	138	0	0	NA	17qB1	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.852409397	sgMsh2	cell line
chr17	19812337	19812337	C	A	ENSMUST00000172203.1	5	ENSMUSG00000091771	missense	T/N	791	Vmn2r103	ENSMUST00000172203.1:c.2372C>A	ENSMUSP00000126756.1:p.Thr791Asn	H-2-Kb	9	8	4	VWVNFLPVF	VWVTFLPVF	SMM	97.524	101.184	1.038	273	0.194	160.102	200.409	1.252	253.84	177.89	795.3	731	101.1835704	97.52366186	146.9772103	142.3147781	M7	1.814285714	1.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.205	273	0	0	NA	17qA3.2	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.9344595	sgMsh2	cell line
chr16	91686273	91686273	G	A	ENSMUST00000159295.7	5	ENSMUSG00000116933	missense	S/F	114	Atp5o	ENSMUST00000159295.7:c.341C>T	ENSMUSP00000125172.1:p.Ser114Phe	H-2-Kb	9	7	5	LLFTFSQPF	LLFTSSQPF	NetMHCpan	88.2	1017.1	11.532	52	0.212	254.62	1544.896	6.067	1486.14	195.11	1017.1	88.2	1603.651519	314.1304236	1641.534444	347.7362769	M7	0.257142857	1.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.183	52	27	5	0.185185185	16qC4	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	0.834176041	sgMsh2	cell line
chr17	25883786	25883786	C	T	ENSMUST00000167626.7	1	ENSMUSG00000025730	missense	G/S	230	Rab40c	ENSMUST00000167626.7:c.688G>A	ENSMUSP00000127546.1:p.Gly230Ser	H-2-Kb	9	4	8	KSFSMANSM	KSFSMANGM	NetMHCpan	186.2	177.2	0.952	87	0.287	228.187	202.909	0.889	169.03	199.86	177.2	186.2	228.6177783	256.5133662	445.9128626	453.1583638	M7	0.471428571	0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.264	87	32	6	0.1875	17qA3.3	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr17	38305350	38305350	A	G	ENSMUST00000213505.1	5	ENSMUSG00000054940	missense	M/T	37	Olfr137	ENSMUST00000213505.1:c.110T>C	ENSMUSP00000150173.1:p.Met37Thr	H-2-Kb	9	7	5	LIFYTMTLM	LIFYMMTLM	NetMHC	215.29	162.63	0.755	138	0.181	293.156	155.313	0.53	162.63	215.29	313.4	411.4	134.3105106	256.5133662	147.9960077	329.7995054	M7	1.1	1.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.187	138	0	0	NA	17qB1	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.852409397	sgMsh2	cell line
chr17	19812337	19812337	C	A	ENSMUST00000172203.1	5	ENSMUSG00000091771	missense	T/N	791	Vmn2r103	ENSMUST00000172203.1:c.2372C>A	ENSMUSP00000126756.1:p.Thr791Asn	H-2-Kb	9	7	5	CVWVNFLPV	CVWVTFLPV	NetMHC	225.74	335.96	1.488	273	0.194	373.645	454.543	1.217	335.96	225.74	1083.8	583.7	309.8203926	301.3769268	573.1258538	445.9128626	M7	1.285714286	1.871428571	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.205	273	0	0	NA	17qA3.2	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.9344595	sgMsh2	cell line
chr17	38305350	38305350	A	G	ENSMUST00000213505.1	5	ENSMUSG00000054940	missense	M/T	37	Olfr137	ENSMUST00000213505.1:c.110T>C	ENSMUSP00000150173.1:p.Met37Thr	H-2-Kb	9	4	8	VVILIFYTM	VVILIFYMM	SMM	173.824	150.699	0.867	138	0.181	226.805	198.292	0.874	208.11	225.97	719.4	301.4	150.6988715	173.8241042	188.4733717	227.6407459	M7	2.214285714	3.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.187	138	0	0	NA	17qB1	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.852409397	sgMsh2	cell line
chr17	56632320	56632320	T	G	ENSMUST00000112979.3	1	ENSMUSG00000040828	missense	F/V	50	Catsperd	ENSMUST00000112979.3:c.148T>G	ENSMUSP00000108603.2:p.Phe50Val	H-2-Kb	9	3	9	LFYAFPNTV	LFYAFPNTF	NetMHCpan	233	338.6	1.453	135	0.185	281.738	333.442	1.184	338.69	258.61	338.6	233	228.6177783	304.8667072	328.2842143	424.864065	M7	0.242857143	0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.202	135	0	0	NA	17qD	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.920784483	sgMsh2	cell line
chr16	90475960	90475960	A	G	ENSMUST00000065856.7	1	ENSMUSG00000053414	missense	K/R	384	Hunk	ENSMUST00000065856.7:c.1151A>G	ENSMUSP00000068007.6:p.Lys384Arg	H-2-Kb	9	4	8	IYFLLNKRL	IYFLLNKKL	NetMHCpan	173.2	323.5	1.868	39	0.308	293.373	494.155	1.684	566.37	307.33	323.5	173.2	591.7114865	324.4217779	421.9393213	279.4151821	M7	0.328571429	0.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.325	39	4	4	1	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	2	1	sgMsh2	cell line
chr17	38305350	38305350	A	G	ENSMUST00000213505.1	5	ENSMUSG00000054940	missense	M/T	37	Olfr137	ENSMUST00000213505.1:c.110T>C	ENSMUSP00000150173.1:p.Met37Thr	H-2-Kb	9	6	6	ILIFYTMTL	ILIFYMMTL	NetMHCpan	60.7	89.5	1.474	138	0.181	361.349	236.617	0.655	185.99	316.02	89.5	60.7	410.3080144	503.6281538	287.2433612	406.6773641	M7	1.471428571	2.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.187	138	0	0	NA	17qB1	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.852409397	sgMsh2	cell line
chr17	19812337	19812337	C	A	ENSMUST00000172203.1	5	ENSMUSG00000091771	missense	T/N	791	Vmn2r103	ENSMUST00000172203.1:c.2372C>A	ENSMUSP00000126756.1:p.Thr791Asn	H-2-Kb	9	4	8	VFFCVWVNF	VFFCVWVTF	SMMPMBEC	208.089	249.029	1.197	273	0.194	303.189	414.473	1.367	540.47	364.77	2015	1419.2	288.4762076	241.607271	249.0290432	208.0894201	M7	1.728571429	2.828571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.205	273	0	0	NA	17qA3.2	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.9344595	sgMsh2	cell line
chr18	37680939	37680939	G	T	ENSMUST00000192931.1	1	ENSMUSG00000103037	missense	S/I	161	Pcdhgb1	ENSMUST00000192931.1:c.482G>T	ENSMUSP00000141348.1:p.Ser161Ile	H-2-Db	9	3	9	NSLKMYTVI	NSLKMYTVS	NetMHC	158.89	19903.22	125.264	239	0.477	356.594	9153.28	25.669	19903.22	158.89	14990.9	524.3	2996.539453	391.3992598	3315.660076	321.7881152	M7	1.214285714	1.214285714	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.468	239	1	1	1	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	2	1	sgMsh2	cell line
chr18	37682066	37682066	C	T	ENSMUST00000192931.1	1	ENSMUSG00000103037	missense	R/C	537	Pcdhgb1	ENSMUST00000192931.1:c.1609C>T	ENSMUSP00000141348.1:p.Arg537Cys	H-2-Db	9	5	7	SANVSMCVL	SANVSMRVL	NetMHC	171.74	1581.12	9.206	288	0.233	415.556	1188.246	2.859	1581.12	171.74	2975.5	608.3	680.1739581	450.4224204	795.3714539	380.6887124	M7	1.757142857	1.757142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.229	288	0	0	NA	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr17	78934740	78934740	G	A	ENSMUST00000024885.9	1	ENSMUSG00000024081	missense	P/L	495	Cebpz	ENSMUST00000024885.9:c.1484C>T	ENSMUSP00000024885.8:p.Pro495Leu	H-2-Db	9	3	9	LTGVNRAYL	LTGVNRAYP	NetMHC	219.87	18677.21	84.947	170	0.218	301.794	8814.504	29.207	18677.21	219.87	13900.2	363.9	3661.170885	308.7592661	3728.807814	294.8288646	M7	0.014285714	0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.23	170	165	40	0.242424242	17qE3	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr18	35581231	35581231	T	C	ENSMUST00000166793.9	1	ENSMUSG00000037236	missense	L/P	415	Matr3	ENSMUST00000166793.9:c.1244T>C	ENSMUSP00000125761.1:p.Leu415Pro	H-2-Kb	8	5	7	KNLRYQPL	KNLRYQLL	NetMHC	6.46	13.63	2.11	138	0.167	19.213	38.593	2.009	13.63	6.46	21.5	17.4	55.68522772	21.02519343	72.06759014	26.16616044	M7	-0.971428571	-0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.165	138	592	124	0.209459459	18qB2	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	0.752125939	sgMsh2	cell line
chr17	78934740	78934740	G	A	ENSMUST00000024885.9	1	ENSMUSG00000024081	missense	P/L	495	Cebpz	ENSMUST00000024885.9:c.1484C>T	ENSMUSP00000024885.8:p.Pro495Leu	H-2-Kb	8	8	4	RAYLYSQI	RAYPYSQI	NetMHC	6.83	14.98	2.193	170	0.218	27.013	58.558	2.168	14.98	6.83	23.2	10.9	93.91608928	49.28786429	99.0238939	43.12608157	M7	0.457142857	0.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.23	170	165	40	0.242424242	17qE3	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr18	37663395	37663395	A	G	ENSMUST00000194190.1	1	ENSMUSG00000103144	missense	N/S	484	Pcdhga1	ENSMUST00000194190.1:c.1451A>G	ENSMUSP00000142062.1:p.Asn484Ser	H-2-Kb	8	11	1	SALVTYAL	NALVTYAL	NetMHC	31.57	1072.26	33.965	156	0.135	243.894	1874.303	7.685	1072.26	31.57	1582.2	146.8	2166.406749	340.9887101	2186.452264	385.2476516	M7	1.914285714	1.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.147	156	0	0	NA	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	0.670075836	sgMsh2	cell line
chr17	88635346	88635346	AC	A	ENSMUST00000064035.12	2	ENSMUSG00000033855	FS	T/X	60	Ston1	ENSMUST00000064035.12:c.184del	ENSMUSP00000067027.6:p.Leu62CysfsTer155	H-2-Kb	8	137	0	VALPRSPL	NA	NetMHC	91.85	NA	NA	37	0.135	178.821	NA	NA	NA	91.85	NA	120.1	NA	237.5417764	NA	281.6696149	M7	0.128571429	0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.153	37	76	6	0.078947368	17qE4	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.697425871	sgMsh2	cell line
chr18	37739233	37739233	T	C	ENSMUST00000091935.6	1	ENSMUSG00000102440	missense	L/P	705	Pcdhga9	ENSMUST00000091935.6:c.2114T>C	ENSMUSP00000089555.4:p.Leu705Pro	H-2-Kb	8	6	6	VSCVFPLF	VSCVFLLF	NetMHC	164.2	353.77	2.155	144	0.188	192.462	304.15	1.58	353.77	164.2	442.6	218.3	254.5305993	225.2890066	183.1217795	166.6249377	M7	1.957142857	2.157142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.186	144	0	0	NA	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	0.847851058	sgMsh2	cell line
chr18	37739233	37739233	T	C	ENSMUST00000091935.6	1	ENSMUSG00000102440	missense	L/P	705	Pcdhga9	ENSMUST00000091935.6:c.2114T>C	ENSMUSP00000089555.4:p.Leu705Pro	H-2-Kb	8	9	3	VFPLFVLV	VFLLFVLV	SMM	103.93	44.334	0.427	144	0.188	157.501	105.609	0.671	157.3	176.41	885.9	444.7	44.33431473	103.9297781	53.91877292	138.5925865	M7	2.857142857	2.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.186	144	0	0	NA	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	0.847851058	sgMsh2	cell line
chr17	88635346	88635346	AC	A	ENSMUST00000064035.12	2	ENSMUSG00000033855	FS	T/X	60	Ston1	ENSMUST00000064035.12:c.184del	ENSMUSP00000067027.6:p.Leu62CysfsTer155	H-2-Kb	8	91	0	ATPTLSPL	NA	NetMHC	192.35	NA	NA	37	0.135	286.809	NA	NA	NA	192.35	NA	353.4	NA	275.2580317	NA	298.3595888	M7	0.314285714	0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.153	37	76	6	0.078947368	17qE4	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.697425871	sgMsh2	cell line
chr17	88635346	88635346	AC	A	ENSMUST00000064035.12	2	ENSMUSG00000033855	FS	T/X	60	Ston1	ENSMUST00000064035.12:c.184del	ENSMUSP00000067027.6:p.Leu62CysfsTer155	H-2-Kb	8	118	0	SSNIFRTI	NA	SMM	189.121	NA	NA	37	0.135	211.601	NA	NA	NA	219.62	NA	223.5	NA	189.1211064	NA	203.5822922	M7	0.328571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.153	37	76	6	0.078947368	17qE4	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.697425871	sgMsh2	cell line
chr18	34425065	34425065	T	C	ENSMUST00000014647.8	1	ENSMUSG00000014503	missense	F/L	266	Pkd2l2	ENSMUST00000014647.8:c.796T>C	ENSMUSP00000014647.7:p.Phe266Leu	H-2-Kb	8	7	5	TSWQLYSV	TSWQFYSV	NetMHCpan	224.1	15.8	0.071	135	0.207	243.655	18.534	0.076	8.36	286.6	15.8	224.1	24.70244836	260.4593785	21.2686537	226.8506354	M7	0.1	0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.215	135	0	0	NA	18qB1	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	0.98004289	sgMsh2	cell line
chr17	80629329	80629329	GA	G	ENSMUST00000025089.8	5	ENSMUSG00000024242	FS	F/X	359	Map4k3	ENSMUST00000025089.8:c.1076del	ENSMUSP00000025089.7:p.Phe359SerfsTer19	H-2-Kb	8	13	0	VQKKYTTL	NA	SMMPMBEC	225.808	NA	NA	121	0.116	237.92	NA	NA	NA	317.66	NA	236.1	NA	239.7397234	NA	225.8083514	M7	-1.457142857	-1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.135	121	58	4	0.068965517	17qE3	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.615375768	sgMsh2	cell line
chr17	88635346	88635346	AC	A	ENSMUST00000064035.12	2	ENSMUSG00000033855	FS	T/X	60	Ston1	ENSMUST00000064035.12:c.184del	ENSMUSP00000067027.6:p.Leu62CysfsTer155	H-2-Kb	8	71	0	WVPHYYLL	NA	SMMPMBEC	249.885	NA	NA	37	0.135	283.87	NA	NA	NA	334.69	NA	300.6	NA	267.1406633	NA	249.8848923	M7	0.628571429	0.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.153	37	76	6	0.078947368	17qE4	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.697425871	sgMsh2	cell line
chr17	86168897	86168897	T	A	ENSMUST00000097275.8	1	ENSMUSG00000045038	missense	F/Y	102	Prkce	ENSMUST00000097275.8:c.305T>A	ENSMUSP00000094874.2:p.Phe102Tyr	H-2-Kb	8	7	5	CTIQYEEL	CTIQFEEL	NetMHCpan	215.2	148.3	0.689	40	0.15	326.052	254.206	0.78	274.13	397.36	148.3	215.2	234.2825811	287.5676312	296.9887511	364.5356443	M7	-0.6	-0.6	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.181	40	5	0	0	17qE4	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.825059363	sgMsh2	cell line
chr18	25140584	25140584	T	C	ENSMUST00000115817.2	1	ENSMUSG00000024269	missense	I/M	173	Tpgs2	ENSMUST00000115817.2:c.519A>G	ENSMUSP00000111484.2:p.Ile173Met	H-2-Kb	8	11	1	MWFLDRAL	IWFLDRAL	SMMPMBEC	337.863	155.503	0.46	182	0.231	407.23	165.595	0.407	151.42	463.11	556.2	1039.1	175.6871509	351.3500341	155.5034397	337.8625068	M7	0.471428571	0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.223	182	31	5	0.161290323	18qA2	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr18	37739233	37739233	T	C	ENSMUST00000091935.6	1	ENSMUSG00000102440	missense	L/P	705	Pcdhga9	ENSMUST00000091935.6:c.2114T>C	ENSMUSP00000089555.4:p.Leu705Pro	H-2-Kb	8	8	4	CVFPLFVL	CVFLLFVL	NetMHCpan	243.4	1101.6	4.526	144	0.188	494.132	369.749	0.748	484.38	740.75	1101.6	243.4	211.2224132	402.476011	255.1173529	585.787365	M7	2.857142857	2.857142857	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.186	144	0	0	NA	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	0.847851058	sgMsh2	cell line
chr18	37663395	37663395	A	G	ENSMUST00000194190.1	1	ENSMUSG00000103144	missense	N/S	484	Pcdhga1	ENSMUST00000194190.1:c.1451A>G	ENSMUSP00000142062.1:p.Asn484Ser	H-2-Kb	9	11	1	SALVTYALV	NALVTYALV	NetMHC	23.19	341.47	14.725	156	0.135	127.027	710.619	5.594	341.47	23.19	836.3	118.5	584.9382211	135.5532704	883.5883884	220.4194935	M7	2.257142857	2.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.147	156	0	0	NA	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	0.670075836	sgMsh2	cell line
chr18	31910808	31910808	A	T	ENSMUST00000054984.7	NA	ENSMUSG00000044982	missense	L/H	144	Sft2d3	ENSMUST00000054984.7:c.431T>A	ENSMUSP00000100656.2:p.Leu144His	H-2-Kb	9	9	3	STHGYAAAL	STLGYAAAL	NetMHC	40.08	21.41	0.534	9	0.222	201.539	149.491	0.742	21.41	40.08	38.9	74.9	260.0818226	328.178405	276.8534884	358.3026333	M7	0.614285714	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe	2	0.273	9	0	0	NA	18qB1	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr18	36535583	36535583	G	A	ENSMUST00000237174.1	NA	ENSMUSG00000024485	missense	A/T	739	Slc4a9	ENSMUST00000237174.1:c.2215G>A	ENSMUSP00000158071.1:p.Ala739Thr	H-2-Kb	9	4	8	VLMLFTSTL	VLMLFTSAL	NetMHCpan	23.3	29.1	1.249	141	0.227	123.563	112.771	0.913	49.3	60.01	29.1	23.3	176.2422384	187.1156015	210.0148478	226.073678	M7	1.442857143	2.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.234	141	2	0	0	18qB2	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr17	88635346	88635346	AC	A	ENSMUST00000064035.12	2	ENSMUSG00000033855	FS	T/X	60	Ston1	ENSMUST00000064035.12:c.184del	ENSMUSP00000067027.6:p.Leu62CysfsTer155	H-2-Kb	9	127	0	LSPTHFGKM	NA	NetMHC	86.5	NA	NA	37	0.135	150.318	NA	NA	NA	86.5	NA	87.7	NA	321.4474612	NA	212.9364454	M7	-0.728571429	-0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.153	37	76	6	0.078947368	17qE4	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.697425871	sgMsh2	cell line
chr17	80629329	80629329	GA	G	ENSMUST00000025089.8	5	ENSMUSG00000024242	FS	F/X	359	Map4k3	ENSMUST00000025089.8:c.1076del	ENSMUSP00000025089.7:p.Phe359SerfsTer19	H-2-Kb	9	12	0	TVQKKYTTL	NA	NetMHC	100.92	NA	NA	121	0.116	215.238	NA	NA	NA	100.92	NA	177.4	NA	283.2109234	NA	253.0754397	M7	-1.457142857	-1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.135	121	58	4	0.068965517	17qE3	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.615375768	sgMsh2	cell line
chr17	80368242	80368242	A	G	ENSMUST00000068175.5	5	ENSMUSG00000054901	missense	I/V	407	Arhgef33	ENSMUST00000068175.5:c.1219A>G	ENSMUSP00000063284.5:p.Ile407Val	H-2-Kb	9	10	2	RVPEYLIHL	RIPEYLIHL	NetMHCpan	71.4	83.4	1.168	185	0.189	293.292	299.158	1.02	102.74	106.73	83.4	71.4	495.5756965	479.854973	611.2938126	600.1364431	M7	0.357142857	0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.187	185	0	0	NA	17qE3	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.852409397	sgMsh2	cell line
chr18	14670358	14670358	A	G	ENSMUST00000040924.8	1	ENSMUSG00000037013	missense	L/P	61	Ss18	ENSMUST00000040924.8:c.182T>C	ENSMUSP00000046320.7:p.Leu61Pro	H-2-Kb	9	6	6	TNLVYPATI	TNLVYLATI	NetMHCpan	106.8	32.3	0.302	90	0.3	310.497	121.806	0.392	46.71	150.83	32.3	106.8	206.1151905	485.4114317	196.9019422	470.1646793	M7	1.528571429	1.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.288	90	40	6	0.15	18qA1	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr18	34425065	34425065	T	C	ENSMUST00000014647.8	1	ENSMUSG00000014503	missense	F/L	266	Pkd2l2	ENSMUST00000014647.8:c.796T>C	ENSMUSP00000014647.7:p.Phe266Leu	H-2-Kb	9	8	4	SWQLYSVKL	SWQFYSVKL	NetMHC	179.84	220.95	1.229	135	0.207	295.887	262.711	0.888	220.95	179.84	256.2	341.1	269.2216614	250.6744092	353.3865369	371.7491635	M7	0.328571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.215	135	0	0	NA	18qB1	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	0.98004289	sgMsh2	cell line
chr18	37680939	37680939	G	T	ENSMUST00000192931.1	1	ENSMUSG00000103037	missense	S/I	161	Pcdhgb1	ENSMUST00000192931.1:c.482G>T	ENSMUSP00000141348.1:p.Ser161Ile	H-2-Kb	9	10	2	VIPNPHFSL	VSPNPHFSL	NetMHC	211.65	119.37	0.564	239	0.477	410.119	267.215	0.652	119.37	211.65	107.8	235.3	415.0591573	584.9382211	522.696991	774.9077422	M7	-0.585714286	0.228571429	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.468	239	1	1	1	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	2	1	sgMsh2	cell line
chr17	90565439	90565439	T	C	ENSMUST00000160844.9	1	ENSMUSG00000024109	missense	K/R	1037	Nrxn1	ENSMUST00000160844.9:c.3110A>G	ENSMUSP00000125407.3:p.Lys1037Arg	H-2-Kb	9	5	7	VAKETYRSL	VAKETYKSL	NetMHC	218.48	466.37	2.135	54	0.185	304.871	413.163	1.355	466.37	218.48	516.5	312.5	331.9785319	297.2418804	359.9564831	350.9538411	M7	-1.557142857	-1.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.193	54	0	0	NA	17qE5	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.879759432	sgMsh2	cell line
chr17	88635346	88635346	AC	A	ENSMUST00000064035.12	2	ENSMUSG00000033855	FS	T/X	60	Ston1	ENSMUST00000064035.12:c.184del	ENSMUSP00000067027.6:p.Leu62CysfsTer155	H-2-Kb	9	90	0	VATPTLSPL	NA	NetMHC	312.28	NA	NA	37	0.135	386.535	NA	NA	NA	312.28	NA	453.1	NA	319.9705442	NA	504.9518876	M7	0.314285714	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.153	37	76	6	0.078947368	17qE4	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.697425871	sgMsh2	cell line
chr18	37739233	37739233	T	C	ENSMUST00000091935.6	1	ENSMUSG00000102440	missense	L/P	705	Pcdhga9	ENSMUST00000091935.6:c.2114T>C	ENSMUSP00000089555.4:p.Leu705Pro	H-2-Kb	9	9	3	VFPLFVLVL	VFLLFVLVL	SMM	294.517	171.834	0.583	144	0.188	374.786	290.677	0.776	396.32	400.23	1256.5	447.8	171.8343562	294.5167504	185.033345	349.3413547	M7	3	3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.186	144	0	0	NA	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	0.847851058	sgMsh2	cell line
chr17	88635346	88635346	AC	A	ENSMUST00000064035.12	2	ENSMUSG00000033855	FS	T/X	60	Ston1	ENSMUST00000064035.12:c.184del	ENSMUSP00000067027.6:p.Leu62CysfsTer155	H-2-Kb	9	52	0	CFILFQSVL	NA	SMM	343.645	NA	NA	37	0.135	482.676	NA	NA	NA	403.98	NA	734.2	NA	343.6449768	NA	561.3710342	M7	2.114285714	2.114285714	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.153	37	76	6	0.078947368	17qE4	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.697425871	sgMsh2	cell line
chr17	88635346	88635346	AC	A	ENSMUST00000064035.12	2	ENSMUSG00000033855	FS	T/X	60	Ston1	ENSMUST00000064035.12:c.184del	ENSMUSP00000067027.6:p.Leu62CysfsTer155	H-2-Kb	9	119	0	SNIFRTIVL	NA	NetMHCpan	157.2	NA	NA	37	0.135	224.462	NA	NA	NA	444.48	NA	157.2	NA	239.3922023	NA	209.5318271	M7	2.085714286	2.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.153	37	76	6	0.078947368	17qE4	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.697425871	sgMsh2	cell line
chr17	88635346	88635346	AC	A	ENSMUST00000064035.12	2	ENSMUSG00000033855	FS	T/X	60	Ston1	ENSMUST00000064035.12:c.184del	ENSMUSP00000067027.6:p.Leu62CysfsTer155	H-2-Kb	9	101	0	SVLQKTLAL	NA	NetMHCpan	446.3	NA	NA	37	0.135	477.108	NA	NA	NA	458.64	NA	446.3	NA	495.5756965	NA	529.9684305	M7	0.728571429	0.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.153	37	76	6	0.078947368	17qE4	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.697425871	sgMsh2	cell line
chr18	37739233	37739233	T	C	ENSMUST00000091935.6	1	ENSMUSG00000102440	missense	L/P	705	Pcdhga9	ENSMUST00000091935.6:c.2114T>C	ENSMUSP00000089555.4:p.Leu705Pro	H-2-Kb	9	8	4	CVFPLFVLV	CVFLLFVLV	SMM	237.744	141.29	0.594	144	0.188	403.989	292.827	0.725	374.67	461.84	2710.8	481.3	141.2895364	237.7442379	210.9842323	346.1385739	M7	2.857142857	2.857142857	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.186	144	0	0	NA	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	0.847851058	sgMsh2	cell line
chr18	36682671	36682671	A	G	ENSMUST00000186538.6	1	ENSMUSG00000033272	missense	T/A	185	Slc35a4	ENSMUST00000186538.6:c.553A>G	ENSMUSP00000140615.1:p.Thr185Ala	H-2-Kb	9	5	7	PMPLHIAPL	PMPLHITPL	SMM	168.31	224.962	1.337	126	0.19	450.843	810.497	1.798	1310.36	673.52	1998.7	1361.6	224.9624328	168.310031	310.6347231	228.165512	M7	1.071428571	1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.209	126	82	19	0.231707317	18qB2	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	0.952692856	sgMsh2	cell line
chr19	5039797	5039797	A	C	ENSMUST00000053705.7	1	ENSMUSG00000047379	missense	E/A	274	B4gat1	ENSMUST00000053705.7:c.821A>C	ENSMUSP00000062016.6:p.Glu274Ala	H-2-Db	9	4	8	RMPMNKNAL	RMPMNKNEL	NetMHC	50.14	42.91	0.856	127	0.268	214.93	180.764	0.841	42.91	50.14	148.9	201	212.6277776	236.9299703	214.5704935	228.8600561	M7	-0.714285714	-0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.275	127	61	17	0.278688525	19qA	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	sgMsh2	cell line
chr19	5098235	5098235	T	C	ENSMUST00000025805.7	1	ENSMUSG00000024873	missense	Y/C	10	Cnih2	ENSMUST00000025805.7:c.29A>G	ENSMUSP00000025805.6:p.Tyr10Cys	H-2-Db	9	6	5	AAFCCMLTL	AAFCYMLTL	SMMPMBEC	440.119	894.479	2.032	42	0.071	494.788	867.569	1.753	1600.52	609.92	660.3	527.6	840.6592577	461.9766231	894.4786932	440.1188809	M7	2.371428571	2.442857143	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Vardict	2	0.1	42	2	0	0	19qA	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	sgMsh2	cell line
chr19	25171612	25171612	A	G	ENSMUST00000025831.7	1	ENSMUSG00000052085	missense	T/A	1485	Dock8	ENSMUST00000025831.7:c.4453A>G	ENSMUSP00000025831.6:p.Thr1485Ala	H-2-Kb	8	5	7	LTHCFAAL	LTHCFATL	NetMHC	13.46	20.98	1.559	113	0.345	24.126	31.465	1.304	20.98	13.46	18.6	21.6	49.28786429	29.63056959	41.95077612	26.65262568	M7	1.257142857	1.257142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.352	113	10	5	0.5	19qB	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	2	1	sgMsh2	cell line
chr19	25409764	25409764	T	C	ENSMUST00000049400.14	5	ENSMUSG00000032702	missense	V/A	239	Kank1	ENSMUST00000049400.14:c.716T>C	ENSMUSP00000042177.8:p.Val239Ala	H-2-Kb	8	9	3	SSARHSPL	SSVRHSPL	NetMHC	29.15	10.11	0.347	125	0.112	49.084	28.486	0.58	10.11	29.15	53.9	118.6	27.27344509	40.52658414	29.69887511	57.64212727	M7	-0.757142857	-0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.127	125	11	2	0.181818182	19qB	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.578909056	sgMsh2	cell line
chr19	12241028	12241028	T	C	ENSMUST00000087818.1	NA	ENSMUSG00000067519	missense	N/S	211	Olfr262	ENSMUST00000087818.1:c.632A>G	ENSMUSP00000085120.1:p.Asn211Ser	H-2-Kb	8	5	7	MIFGFVSM	MIFGFVNM	NetMHCpan	24.6	14.4	0.585	348	0.014	39.972	15.267	0.382	11.13	40.63	14.4	24.6	16.13392375	39.60408646	17.64980859	40.3403814	M7	2.142857143	2.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.019	348	0	0	NA	19qA	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.086608441	sgMsh2	cell line
chr18	87756730	87756730	C	G	ENSMUST00000091776.6	NA	ENSMUSG00000069324	missense	P/A	126	Gm5096	ENSMUST00000091776.6:c.376C>G	ENSMUSP00000135956.1:p.Pro126Ala	H-2-Kb	8	7	5	VSQTASYL	VSQTPSYL	SMM	109.582	165.859	1.514	288	0.236	131.957	250.56	1.899	264.67	114.38	836.3	352.8	165.8593656	109.5821962	236.4503711	149.534017	M7	-0.214285714	-0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.239	288	0	0	NA	18qE4	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr19	24272399	24272399	T	G	ENSMUST00000081333.10	1	ENSMUSG00000059363	missense	E/A	108	Fxn	ENSMUST00000081333.10:c.323A>C	ENSMUSP00000080081.4:p.Glu108Ala	H-2-Kb	8	6	6	LAEFFADL	LAEFFEDL	NetMHCpan	173.2	1634.8	9.439	82	0.317	205.358	1938.669	9.44	2515.07	197.54	1634.8	173.2	2242.538976	321.1737185	1547.889663	213.1768301	M7	0.857142857	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.337	82	52	12	0.230769231	19qB	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	2	1	sgMsh2	cell line
chr19	16641572	16641572	TA	T	ENSMUST00000068156.7	2	ENSMUSG00000046230	FS	Y/X	2877	Vps13a	ENSMUST00000068156.7:c.8629del	ENSMUSP00000068716.6:p.Tyr2877MetfsTer20	H-2-Kb	8	6	6	VEAFFMNL	VEAFFYEP	SMM	63.495	8067.519	127.057	147	0.19	112.485	14589.95	129.706	20067.12	201.53	16997.3	128.2	8067.519058	63.49506908	12182.60042	96.76983488	M7	0.871428571	0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.185	147	61	4	0.06557377	19qA	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.843292719	sgMsh2	cell line
chr19	5655062	5655062	A	G	ENSMUST00000071857.12	1	ENSMUSG00000056917	missense	F/L	502	Sipa1	ENSMUST00000071857.12:c.1504T>C	ENSMUSP00000073618.5:p.Phe502Leu	H-2-Kb	8	4	8	ANADFRAL	ANADFRAF	SMM	145.794	2369.954	16.255	86	0.14	201.668	2632.782	13.055	4044.23	265.27	1742.8	172.8	2369.954455	145.794117	2895.609548	230.5366617	M7	-0.185714286	-0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.137	86	19	4	0.210526316	19qA	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	sgMsh2	cell line
chr19	11283780	11283780	AT	A	ENSMUST00000067673.12	1	ENSMUSG00000054523	FS	N/X	5	Ms4a5	ENSMUST00000067673.12:c.14del	ENSMUSP00000066960.6:p.Asn5MetfsTer46	H-2-Kb	8	13	0	CSLQRSPL	NA	SMM	273.363	NA	NA	223	0.135	308.753	NA	NA	NA	297.07	NA	328.4	NA	273.3631687	NA	320.4350395	M7	-0.514285714	-0.514285714	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.144	223	0	0	NA	19qA	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.656400819	sgMsh2	cell line
chr18	71809108	71809108	T	C	ENSMUST00000114943.10	1	ENSMUSG00000060534	missense	T/A	313	Dcc	ENSMUST00000114943.10:c.937A>G	ENSMUSP00000110593.3:p.Thr313Ala	H-2-Kb	8	10	2	VAYKNENI	VTYKNENI	NetMHCpan	320.3	236.4	0.738	212	0.259	471.961	302.046	0.64	613.98	579.87	236.4	320.3	313.8629122	484.9980584	290.2284617	458.9231861	M7	-1.342857143	-1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.259	212	0	0	NA	18qE2	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr19	16383254	16383254	G	A	ENSMUST00000025541.5	1	ENSMUSG00000024639	missense	V/M	314	Gnaq	ENSMUST00000025541.5:c.940G>A	ENSMUSP00000025541.5:p.Val314Met	H-2-Kb	8	6	6	ILKMFMDL	ILKMFVDL	NetMHCpan	249.7	319.7	1.28	218	0.165	388.374	474.546	1.222	1460.9	633.96	319.7	249.7	595.3056439	459.9811133	353.7854762	316.7670499	M7	0.971428571	1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.172	218	275	40	0.145454545	19qA	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.784034312	sgMsh2	cell line
chr19	13190834	13190834	C	A	ENSMUST00000208533.2	2	ENSMUSG00000094721	missense	P/T	56	Olfr1462	ENSMUST00000208533.2:c.166C>A	ENSMUSP00000147174.1:p.Pro56Thr	H-2-Kb	8	11	1	TMYIFLSN	PMYIFLSN	SMM	117.149	1379.558	11.776	327	0.15	283.529	5301.305	18.698	9738.78	674.75	8693.9	421.6	1379.558114	117.1493815	1908.710225	145.4587999	M7	1.057142857	1.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.152	327	0	0	NA	19qA	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.692867532	sgMsh2	cell line
chr19	13190834	13190834	C	A	ENSMUST00000208533.2	2	ENSMUSG00000094721	missense	P/T	56	Olfr1462	ENSMUST00000208533.2:c.166C>A	ENSMUSP00000147174.1:p.Pro56Thr	H-2-Kb	9	11	1	TMYIFLSNL	PMYIFLSNL	NetMHC	3.88	23.01	5.93	327	0.15	6.909	25.54	3.697	23.01	3.88	35.5	4.2	17.70557356	9.618558706	28.0704904	11.94675617	M7	1.328571429	1.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.152	327	0	0	NA	19qA	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.692867532	sgMsh2	cell line
chr19	12241028	12241028	T	C	ENSMUST00000087818.1	NA	ENSMUSG00000067519	missense	N/S	211	Olfr262	ENSMUST00000087818.1:c.632A>G	ENSMUSP00000085120.1:p.Asn211Ser	H-2-Kb	9	5	7	MIFGFVSML	MIFGFVNML	NetMHC	17.22	25.85	1.501	348	0.014	49.362	63.174	1.28	25.85	17.22	37.2	20.9	89.14767066	77.82336405	107.9567993	89.58803273	M7	2.042857143	2.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.019	348	0	0	NA	19qA	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.086608441	sgMsh2	cell line
chr19	6014449	6014449	T	C	ENSMUST00000025891.9	1	ENSMUSG00000024942	missense	T/A	7	Capn1	ENSMUST00000025891.9:c.19A>G	ENSMUSP00000025891.8:p.Thr7Ala	H-2-Kb	9	6	2	IAPVYCTGV	ITPVYCTGV	NetMHC	34.06	40.24	1.181	61	0.115	225.487	323.367	1.434	40.24	34.06	136.1	80.2	510.6343193	370.7746213	522.696991	404.8088513	M7	0.985714286	1.342857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.12	61	138	17	0.123188406	19qA	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	sgMsh2	cell line
chr19	24272399	24272399	T	G	ENSMUST00000081333.10	1	ENSMUSG00000059363	missense	E/A	108	Fxn	ENSMUST00000081333.10:c.323A>C	ENSMUSP00000080081.4:p.Glu108Ala	H-2-Kb	9	5	7	SLAEFFADL	SLAEFFEDL	NetMHCpan	41	215.1	5.246	82	0.317	210.914	670.903	3.181	519.09	55.18	215.1	41	879.2451877	382.0410236	822.7161071	366.6485738	M7	0.857142857	1.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.337	82	52	12	0.230769231	19qB	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	2	1	sgMsh2	cell line
chr19	5655062	5655062	A	G	ENSMUST00000071857.12	1	ENSMUSG00000056917	missense	F/L	502	Sipa1	ENSMUST00000071857.12:c.1504T>C	ENSMUSP00000073618.5:p.Phe502Leu	H-2-Kb	9	4	8	ANADFRALL	ANADFRAFL	NetMHC	68.93	102.13	1.482	86	0.14	144.716	251.549	1.738	102.13	68.93	70.4	70.6	400.9682638	218.831582	458.4056903	275.5814621	M7	0.857142857	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.137	86	19	4	0.210526316	19qA	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	sgMsh2	cell line
chr19	13445599	13445599	A	G	ENSMUST00000217249.1	5	ENSMUSG00000096320	missense	T/A	196	Olfr1471	ENSMUST00000217249.1:c.586A>G	ENSMUSP00000150749.1:p.Thr196Ala	H-2-Kb	9	10	2	IALLVLATL	ITLLVLATL	NetMHC	124.05	139.69	1.126	637	0.306	228.715	283.656	1.24	139.69	124.05	144.4	129.9	462.4981501	335.8226621	422.9119919	327.5291816	M7	2.928571429	3.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.307	637	0	0	NA	19qA	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	2	1	sgMsh2	cell line
chr19	13453837	13453837	G	A	ENSMUST00000096201.3	5	ENSMUSG00000095189	missense	R/C	227	Olfr1472	ENSMUST00000096201.3:c.679C>T	ENSMUSP00000093915.3:p.Arg227Cys	H-2-Kb	9	5	7	IAILRMCSV	IAILRMRSV	NetMHCpan	154	207.9	1.35	387	0.142	210.333	264.356	1.257	135.27	172.21	207.9	154	370.7746213	299.3022626	320.8115533	248.4562923	M7	1.657142857	2.071428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.146	387	0	0	NA	19qA	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.665517497	sgMsh2	cell line
chr18	63106236	63106236	A	G	ENSMUST00000047480.12	1	ENSMUSG00000041482	missense	Y/H	758	Piezo2	ENSMUST00000047480.12:c.2272T>C	ENSMUSP00000040019.5:p.Tyr758His	H-2-Kb	9	11	1	HQFENFPGL	YQFENFPGL	NetMHC	224.35	73.89	0.329	68	0.176	340.194	176.67	0.519	73.89	224.35	81	253.7	272.3391013	426.6875784	329.7995054	557.5065832	M7	0.057142857	0.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.172	68	0	0	NA	18qE1	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	0.784034312	sgMsh2	cell line
chr18	63106236	63106236	A	G	ENSMUST00000047480.12	1	ENSMUSG00000041482	missense	Y/H	758	Piezo2	ENSMUST00000047480.12:c.2272T>C	ENSMUSP00000040019.5:p.Tyr758His	H-2-Kb	9	5	7	LIFIYTHQF	LIFIYTYQF	NetMHCpan	147.6	417.1	2.826	68	0.176	209.18	182.911	0.874	177.41	232.9	417.1	147.6	188.4126249	250.6744092	154.9708446	185.4598909	M7	0.2	1.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.172	68	0	0	NA	18qE1	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	0.784034312	sgMsh2	cell line
chr19	16383254	16383254	G	A	ENSMUST00000025541.5	1	ENSMUSG00000024639	missense	V/M	314	Gnaq	ENSMUST00000025541.5:c.940G>A	ENSMUSP00000025541.5:p.Val314Met	H-2-Kb	9	5	7	FILKMFMDL	FILKMFVDL	NetMHC	268.8	623.27	2.319	218	0.165	358.268	502.216	1.402	623.27	268.8	645.4	411.6	381.1623536	362.3347605	317.8703353	354.201177	M7	0.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.172	218	275	40	0.145454545	19qA	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.784034312	sgMsh2	cell line
chr19	11283780	11283780	AT	A	ENSMUST00000067673.12	1	ENSMUSG00000054523	FS	N/X	5	Ms4a5	ENSMUST00000067673.12:c.14del	ENSMUSP00000066960.6:p.Asn5MetfsTer46	H-2-Kb	9	7	0	IVPCSWCSL	NA	NetMHCpan	274.5	NA	NA	223	0.135	465.013	NA	NA	NA	282.51	NA	274.5	NA	648.7987433	NA	647.5152482	M7	0.671428571	1.485714286	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;Vardict	3	0.144	223	0	0	NA	19qA	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.656400819	sgMsh2	cell line
chr19	5098235	5098235	T	C	ENSMUST00000025805.7	1	ENSMUSG00000024873	missense	Y/C	10	Cnih2	ENSMUST00000025805.7:c.29A>G	ENSMUSP00000025805.6:p.Tyr10Cys	H-2-Kb	9	6	5	AAFCCMLTL	AAFCYMLTL	NetMHCpan	250.3	16.7	0.067	42	0.071	277.598	69.978	0.252	55.38	282.77	16.7	250.3	100.2559138	335.8226621	84.57655669	272.4269072	M7	2.371428571	2.442857143	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Vardict	2	0.1	42	2	0	0	19qA	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	sgMsh2	cell line
chr19	16641572	16641572	TA	T	ENSMUST00000068156.7	2	ENSMUSG00000046230	FS	Y/X	2877	Vps13a	ENSMUST00000068156.7:c.8629del	ENSMUSP00000068716.6:p.Tyr2877MetfsTer20	H-2-Kb	9	5	7	GVEAFFMNL	GVEAFFYEP	NetMHCpan	209.8	25558.5	121.823	147	0.19	428.684	14626.295	34.119	23829.46	327.4	25558.5	209.8	3598.404656	632.5720517	5423.12981	529.9684305	M7	0.871428571	1.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.185	147	61	4	0.06557377	19qA	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.843292719	sgMsh2	cell line
chr19	23350619	23350619	T	C	ENSMUST00000036069.7	1	ENSMUSG00000033207	missense	K/E	462	Mamdc2	ENSMUST00000036069.7:c.1384A>G	ENSMUSP00000045432.6:p.Lys462Glu	H-2-Kb	9	8	4	ISFEKPMPT	ISFKKPMPT	SMMPMBEC	350.954	347.736	0.991	237	0.177	411.952	407.077	0.988	422.41	431.16	402.9	464.7	411.2538721	392.7443988	347.7362769	350.9538411	M7	-0.942857143	-0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.183	237	0	0	NA	19qB	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.834176041	sgMsh2	cell line
chr19	12241028	12241028	T	C	ENSMUST00000087818.1	NA	ENSMUSG00000067519	missense	N/S	211	Olfr262	ENSMUST00000087818.1:c.632A>G	ENSMUSP00000085120.1:p.Asn211Ser	H-2-Kb	9	4	8	TMIFGFVSM	TMIFGFVNM	NetMHCpan	184.3	104.4	0.566	348	0.014	240.999	210.119	0.872	285.04	537.83	104.4	184.3	237.7442379	276.7642557	182.4945923	205.2343263	M7	2.142857143	2.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.019	348	0	0	NA	19qA	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.086608441	sgMsh2	cell line
chr2	10126177	10126177	T	G	ENSMUST00000042290.13	1	ENSMUSG00000037254	missense	K/N	116	Itih2	ENSMUST00000042290.13:c.348A>C	ENSMUSP00000046530.7:p.Lys116Asn	H-2-Db	9	7	5	VQIPNGAFI	VQIPKGAFI	NetMHC	15.68	3324.83	212.043	195	0.215	65.122	3234.913	49.675	3324.83	15.68	2541.1	33.5	3144.995295	96.74310008	3833.275205	114.1747318	M7	1.157142857	1.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.224	195	149	43	0.288590604	2qA1	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr19	34524751	34524751	A	G	ENSMUST00000049572.14	1	ENSMUSG00000024781	missense	V/A	31	Lipa	ENSMUST00000049572.14:c.92T>C	ENSMUSP00000053270.8:p.Val31Ala	H-2-Db	9	10	2	EANMNVTEI	EVNMNVTEI	NetMHC	98.64	3377.74	34.243	201	0.149	128.966	1339.107	10.383	3377.74	98.64	1767	185.8	911.213195	142.4360758	737.1739842	115.4968129	M7	-0.085714286	-0.085714286	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.158	201	124	8	0.064516129	19qC1	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.720217566	sgMsh2	cell line
chr19	42762166	42762166	T	C	ENSMUST00000160455.7	1	ENSMUSG00000025188	missense	Q/R	434	Hps1	ENSMUST00000160455.7:c.1301A>G	ENSMUSP00000125662.1:p.Gln434Arg	H-2-Db	9	6	6	SALRSRPFV	SALRSQPFV	NetMHC	147.3	140.22	0.952	66	0.121	410.083	350.555	0.855	140.22	147.3	329.9	448.1	371.2102845	372.0660126	452.4493827	462.9882827	M7	-0.085714286	-0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.145	66	79	15	0.189873418	19qC3	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.660959158	sgMsh2	cell line
chr19	47129189	47129189	GA	G	ENSMUST00000072141.3	1	ENSMUSG00000025047	FS	E/X	1659	Pdcd11	ENSMUST00000072141.3:c.4979del	ENSMUSP00000072008.2:p.Asn1660ThrfsTer9	H-2-Db	9	5	8	VALLNLETC	VALLNLENM	SMMPMBEC	54.647	20.633	0.378	120	0.158	159.116	15.88	0.1	10.3	226.9	11.5	489.4	20.25909309	91.33137583	20.63336211	54.64746241	M7	0.885714286	1.485714286	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.163	120	70	2	0.028571429	19qC3	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.743009261	sgMsh2	cell line
chr19	47733582	47733582	A	G	ENSMUST00000099353.5	1	ENSMUSG00000025066	missense	S/G	146	Sfr1	ENSMUST00000099353.5:c.436A>G	ENSMUSP00000096954.4:p.Ser146Gly	H-2-Kb	8	5	7	SSHSFCGV	SSHSFCSV	NetMHC	18.13	24.06	1.327	237	0.152	65.319	62.76	0.961	24.06	18.13	46.5	54.3	79.02054124	76.33786332	79.75170931	76.69022289	M7	0.614285714	0.614285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.157	237	1015	135	0.133004926	19qD1	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.715659227	sgMsh2	cell line
chr19	44153684	44153684	A	G	ENSMUST00000042026.4	1	ENSMUSG00000037578	missense	V/A	545	Pkd2l1	ENSMUST00000042026.4:c.1634T>C	ENSMUSP00000045675.4:p.Val545Ala	H-2-Kb	8	8	4	VTYAFFVF	VTYVFFVF	NetMHC	23.26	20.43	0.878	157	0.134	26.478	27.127	1.024	20.43	23.26	46.7	23.8	29.49442949	30.74255792	24.75939338	29.15680954	M7	1.771428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.149	157	0	0	NA	19qC3	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.679192515	sgMsh2	cell line
chr19	44153684	44153684	A	G	ENSMUST00000042026.4	1	ENSMUSG00000037578	missense	V/A	545	Pkd2l1	ENSMUST00000042026.4:c.1634T>C	ENSMUSP00000045675.4:p.Val545Ala	H-2-Kb	8	11	1	AFFVFFVL	VFFVFFVL	SMM	12.964	3.441	0.265	157	0.134	32.287	10.863	0.336	17.71	50.81	79.7	179.2	3.441438398	12.96402918	4.015503419	13.76385219	M7	3.342857143	3.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.149	157	0	0	NA	19qC3	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.679192515	sgMsh2	cell line
chr2	32673367	32673367	A	G	ENSMUST00000009705.13	1	ENSMUSG00000026814	missense	T/A	312	Eng	ENSMUST00000009705.13:c.934A>G	ENSMUSP00000009705.7:p.Thr312Ala	H-2-Kb	8	9	3	IVASFVEL	IVTSFVEL	NetMHCpan	22.7	36.5	1.608	70	0.229	84.25	86.074	1.022	64.07	68.33	36.5	22.7	111.8767908	100.1705365	108.0786721	107.0878008	M7	1.785714286	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.231	70	0	0	NA	2qB	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr2	32673367	32673367	A	G	ENSMUST00000009705.13	1	ENSMUSG00000026814	missense	T/A	312	Eng	ENSMUST00000009705.13:c.934A>G	ENSMUSP00000009705.7:p.Thr312Ala	H-2-Kb	8	11	1	ASFVELPL	TSFVELPL	SMMPMBEC	56.72	44.539	0.785	70	0.229	72.04	60.417	0.839	73.04	82.88	54.5	61.2	66.33458249	83.70280268	44.53895263	56.7204934	M7	1.242857143	1.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.231	70	0	0	NA	2qB	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr2	16357184	16357184	T	C	ENSMUST00000028081.12	1	ENSMUSG00000026748	missense	F/S	20	Plxdc2	ENSMUST00000028081.12:c.59T>C	ENSMUSP00000028081.6:p.Phe20Ser	H-2-Kb	8	5	7	VMLLCHSL	VMLLCHFL	NetMHCpan	111.4	240.8	2.162	75	0.28	167.948	200.33	1.193	262.88	161.82	240.8	111.4	154.0777756	181.0256018	159.8600704	174.0764414	M7	1.685714286	1.742857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.286	75	0	0	NA	2qA2	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr19	56371846	56371846	T	C	ENSMUST00000073536.12	1	ENSMUSG00000049134	missense	M/V	466	Nrap	ENSMUST00000073536.12:c.1396A>G	ENSMUSP00000073228.6:p.Met466Val	H-2-Kb	8	9	3	TTVRLVPL	TTMRLVPL	NetMHCpan	155.2	55.8	0.36	79	0.127	174.998	95.165	0.544	86.4	192.33	55.8	155.2	147.8223152	190.8710225	103.9297781	159.1255801	M7	1.314285714	1.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.141	79	0	0	NA	19qD2	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.642725802	sgMsh2	cell line
chr19	34039172	34039172	A	G	ENSMUST00000054260.7	1	ENSMUSG00000024771	missense	S/G	267	Lipk	ENSMUST00000054260.7:c.799A>G	ENSMUSP00000053913.6:p.Ser267Gly	H-2-Kb	8	4	8	SNFLFSLG	SNFLFSLS	SMM	51.492	48.949	0.951	134	0.299	115.861	82.255	0.71	98.25	207.49	82.9	150.3	48.94856902	51.49202839	81.60936526	81.42166892	M7	1.214285714	1.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.294	134	0	0	NA	19qC1	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	2	1	sgMsh2	cell line
chr2	20859758	20859758	T	G	ENSMUST00000154230.8	1	ENSMUSG00000036591	missense	K/N	1228	Arhgap21	ENSMUST00000154230.8:c.3684A>C	ENSMUSP00000122497.2:p.Lys1228Asn	H-2-Kb	8	10	2	LNSFFRKL	LKSFFRKL	NetMHCpan	63	1547.8	24.568	171	0.234	325.727	2018.704	6.198	4540.17	230.01	1547.8	63	2097.683683	426.324214	1939.724271	421.444121	M7	-0.471428571	-0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.23	171	79	19	0.240506329	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr19	38795525	38795525	A	G	ENSMUST00000025963.7	1	ENSMUSG00000024999	missense	Y/H	580	Noc3l	ENSMUST00000025963.7:c.1738T>C	ENSMUSP00000025963.7:p.Tyr580His	H-2-Kb	8	11	1	HTHLYKTL	YTHLYKTL	SMMPMBEC	323.4	167.009	0.516	515	0.175	480.348	160.895	0.335	154.78	777.63	65.4	490	200.7890385	470.6954498	167.0090478	323.3999884	M7	-0.314285714	-0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.165	515	70	10	0.142857143	19qC3	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.752125939	sgMsh2	cell line
chr19	44153684	44153684	A	G	ENSMUST00000042026.4	1	ENSMUSG00000037578	missense	V/A	545	Pkd2l1	ENSMUST00000042026.4:c.1634T>C	ENSMUSP00000045675.4:p.Val545Ala	H-2-Kb	9	8	4	VTYAFFVFF	VTYVFFVFF	NetMHC	18.25	16.24	0.89	157	0.134	21.619	16.215	0.75	16.24	18.25	64.3	35.8	13.30791444	21.04311361	16.19011748	22.19473684	M7	2.271428571	2.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.149	157	0	0	NA	19qC3	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.679192515	sgMsh2	cell line
chr19	44153684	44153684	A	G	ENSMUST00000042026.4	1	ENSMUSG00000037578	missense	V/A	545	Pkd2l1	ENSMUST00000042026.4:c.1634T>C	ENSMUSP00000045675.4:p.Val545Ala	H-2-Kb	9	11	1	AFFVFFVLL	VFFVFFVLL	SMM	22.757	7.658	0.337	157	0.134	34.218	15.048	0.44	19.57	39.38	85	173.7	7.657905451	22.7567375	10.52567606	29.05694826	M7	3.485714286	3.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.149	157	0	0	NA	19qC3	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.679192515	sgMsh2	cell line
chr19	37698433	37698433	A	G	ENSMUST00000025946.6	1	ENSMUSG00000024987	missense	H/R	111	Cyp26a1	ENSMUST00000025946.6:c.332A>G	ENSMUSP00000025946.5:p.His111Arg	H-2-Kb	9	8	4	VSVRWPASV	VSVHWPASV	NetMHC	49.19	122.37	2.488	110	0.136	313.003	320.127	1.023	122.37	49.19	231.7	147.1	440.6664633	494.435904	408.5545015	478.9056933	M7	0.342857143	0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.13	110	0	0	NA	19qC2	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.592584073	sgMsh2	cell line
chr19	44153684	44153684	A	G	ENSMUST00000042026.4	1	ENSMUSG00000037578	missense	V/A	545	Pkd2l1	ENSMUST00000042026.4:c.1634T>C	ENSMUSP00000045675.4:p.Val545Ala	H-2-Kb	9	5	7	VYFVTYAFF	VYFVTYVFF	SMM	53.347	76.933	1.442	157	0.134	78.174	169.486	2.168	233.23	78.32	694.7	138.5	76.93252737	53.3469998	105.7426037	78.02791461	M7	1.771428571	1.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.149	157	0	0	NA	19qC3	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.679192515	sgMsh2	cell line
chr19	47733582	47733582	A	G	ENSMUST00000099353.5	1	ENSMUSG00000025066	missense	S/G	146	Sfr1	ENSMUST00000099353.5:c.436A>G	ENSMUSP00000096954.4:p.Ser146Gly	H-2-Kb	9	5	7	SSHSFCGVV	SSHSFCSVV	NetMHC	126.54	73.19	0.578	237	0.152	302.608	204.113	0.675	73.19	126.54	128.9	189.2	279.3251239	416.0159675	366.6485738	466.9280884	M7	1.328571429	1.328571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.157	237	1015	135	0.133004926	19qD1	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.715659227	sgMsh2	cell line
chr2	23110710	23110710	A	G	ENSMUST00000114529.9	1	ENSMUSG00000026781	missense	I/M	488	Acbd5	ENSMUST00000114529.9:c.1464A>G	ENSMUSP00000110175.2:p.Ile488Met	H-2-Kb	9	10	2	IMWPFIAQW	IIWPFIAQW	NetMHC	145.25	189.33	1.303	195	0.169	256.387	559.523	2.182	189.33	145.25	850.1	568	764.0292757	341.2793414	355.017695	171.4944225	M7	0.314285714	1.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.188	195	119	22	0.18487395	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.856967736	sgMsh2	cell line
chr2	13444324	13444324	T	C	ENSMUST00000091436.6	5	ENSMUSG00000026726	missense	E/G	980	Cubn	ENSMUST00000091436.6:c.2939A>G	ENSMUSP00000089009.5:p.Glu980Gly	H-2-Kb	9	4	8	VFSSFYLGF	VFSSFYLEF	SMM	101.651	116.711	1.148	128	0.203	184.67	276.944	1.5	372.65	205.94	425.2	408.8	116.7105189	101.6506125	181.2383084	163.3992279	M7	0.871428571	1.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.204	128	36	9	0.25	2qA1	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.929901161	sgMsh2	cell line
chr2	32673367	32673367	A	G	ENSMUST00000009705.13	1	ENSMUSG00000026814	missense	T/A	312	Eng	ENSMUST00000009705.13:c.934A>G	ENSMUSP00000009705.7:p.Thr312Ala	H-2-Kb	9	8	4	SIVASFVEL	SIVTSFVEL	NetMHCpan	172	152.9	0.889	70	0.229	379.729	326.134	0.859	207.38	242.91	152.9	172	461.4344339	516.547186	444.8872915	529.9684305	M7	1.785714286	2.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.231	70	0	0	NA	2qB	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr2	32673367	32673367	A	G	ENSMUST00000009705.13	1	ENSMUSG00000026814	missense	T/A	312	Eng	ENSMUST00000009705.13:c.934A>G	ENSMUSP00000009705.7:p.Thr312Ala	H-2-Kb	9	11	1	ASFVELPLV	TSFVELPLV	SMM	299.992	254.748	0.849	70	0.229	371.47	300.368	0.809	268.65	327.64	378.9	415.3	254.7475407	299.9922256	332.0855664	418.0709584	M7	1.957142857	1.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.231	70	0	0	NA	2qB	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr19	34039172	34039172	A	G	ENSMUST00000054260.7	1	ENSMUSG00000024771	missense	S/G	267	Lipk	ENSMUST00000054260.7:c.799A>G	ENSMUSP00000053913.6:p.Ser267Gly	H-2-Kb	9	4	8	SNFLFSLGG	SNFLFSLSG	SMM	263.7	295.876	1.122	134	0.299	383.954	383.395	0.999	645.93	475	380.2	387.5	295.876178	263.6999212	386.5894518	380.4083139	M7	1.657142857	1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.294	134	0	0	NA	19qC1	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	2	1	sgMsh2	cell line
chr19	44153684	44153684	A	G	ENSMUST00000042026.4	1	ENSMUSG00000037578	missense	V/A	545	Pkd2l1	ENSMUST00000042026.4:c.1634T>C	ENSMUSP00000045675.4:p.Val545Ala	H-2-Kb	9	10	2	YAFFVFFVL	YVFFVFFVL	SMMPMBEC	210.984	243.921	1.156	157	0.134	312.217	409.242	1.311	559	489.13	827.6	393.7	259.483651	230.7331526	243.9214539	210.9842323	M7	3.342857143	3.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.149	157	0	0	NA	19qC3	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.679192515	sgMsh2	cell line
chr19	44153684	44153684	A	G	ENSMUST00000042026.4	1	ENSMUSG00000037578	missense	V/A	545	Pkd2l1	ENSMUST00000042026.4:c.1634T>C	ENSMUSP00000045675.4:p.Val545Ala	H-2-Kb	10	8	4	VTYAFFVFFV	VTYVFFVFFV	NetMHC	55.76	45.18	0.81	157	0.134	458.736	672.477	1.466	45.18	55.76	412	191.6	1433.276565	902.2564596	932.9535036	725.8719263	M7	3.057142857	3.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.149	157	0	0	NA	19qC3	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.679192515	sgMsh2	cell line
chr19	44153684	44153684	A	G	ENSMUST00000042026.4	1	ENSMUSG00000037578	missense	V/A	545	Pkd2l1	ENSMUST00000042026.4:c.1634T>C	ENSMUSP00000045675.4:p.Val545Ala	H-2-Kb	11	8	4	VTYAFFVFFVL	VTYVFFVFFVL	NetMHC	35.43	29.25	0.826	157	0.134	424.25	451.635	1.065	29.25	35.43	165.4	84.7	1782.871325	1782.871325	737.8702492	763.8006085	M7	3.342857143	3.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.149	157	0	0	NA	19qC3	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.679192515	sgMsh2	cell line
chr2	65763849	65763849	T	C	ENSMUST00000028377.13	5	ENSMUSG00000075318	missense	S/P	1681	Scn2a	ENSMUST00000028377.13:c.5041T>C	ENSMUSP00000028377.7:p.Ser1681Pro	H-2-Db	9	8	4	FGMPNFAYV	FGMSNFAYV	NetMHCpan	10.7	5.9	0.551	367	0.256	61.961	27.758	0.448	4.26	11.3	5.9	10.7	49.6158002	112.621161	50.5324087	118.732606	M7	0.614285714	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.252	367	0	0	NA	2qC1.3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr2	86170923	86170923	T	G	ENSMUST00000215171.1	5	ENSMUSG00000075200	missense	K/T	298	Olfr1044	ENSMUST00000215171.1:c.893A>C	ENSMUSP00000150199.1:p.Lys298Thr	H-2-Db	9	3	9	YSLRNKEVT	YSLRNKEVK	NetMHC	87.92	1335.88	15.194	199	0.196	176.299	819.153	4.646	1335.88	87.92	5047.6	192.8	302.4266091	282.2409336	223.1361832	159.7975071	M7	-1.157142857	-1.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.201	199	0	0	NA	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.916226144	sgMsh2	cell line
chr2	37790466	37790466	T	C	ENSMUST00000050372.9	5	ENSMUSG00000035403	missense	F/L	469	Crb2	ENSMUST00000050372.9:c.1405T>C	ENSMUSP00000058007.7:p.Phe469Leu	H-2-Db	9	7	5	LALRLRTTL	LALRFRTTL	SMM	127.826	330.081	2.582	77	0.208	152.598	365.275	2.394	278.88	139.02	657.5	644.7	330.0806	127.8262358	400.4700113	166.1766501	M7	0.142857143	0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.216	77	0	0	NA	2qB	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.984601229	sgMsh2	cell line
chr2	85753673	85753673	A	AC	ENSMUST00000216831.2	3	ENSMUSG00000110879	FS	Y/YX	104	Olfr1010	ENSMUST00000216831.2:c.319dup	ENSMUSP00000151209.1:p.Leu107ProfsTer209	H-2-Db	9	61	0	GGFANSTII	NA	NetMHCpan	146.1	NA	NA	307	0.127	280.895	NA	NA	NA	182.85	NA	146.1	NA	552.8661494	NA	378.9396067	M7	1.228571429	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.127	307	0	0	NA	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.578909056	sgMsh2	cell line
chr2	85753673	85753673	A	AC	ENSMUST00000216831.2	3	ENSMUSG00000110879	FS	Y/YX	104	Olfr1010	ENSMUST00000216831.2:c.319dup	ENSMUSP00000151209.1:p.Leu107ProfsTer209	H-2-Db	9	52	0	ASLVAASYL	NA	SMM	294.863	NA	NA	307	0.127	321.475	NA	NA	NA	345.25	NA	297.7	NA	294.86281	NA	442.1503774	M7	1.9	1.9	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.127	307	0	0	NA	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.578909056	sgMsh2	cell line
chr2	85769995	85769995	C	A	ENSMUST00000216397.2	2	ENSMUSG00000053287	missense	L/I	65	Olfr1013	ENSMUST00000216397.2:c.193C>A	ENSMUSP00000150201.1:p.Leu65Ile	H-2-Db	9	6	6	FFIGNISFL	FFIGNLSFL	SMM	126.072	100.374	0.796	407	0.01	263.746	191.508	0.726	251.32	373.12	500.6	497.8	100.3737154	126.0723941	131.6952163	154.3725222	M7	1.557142857	1.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.013	407	0	0	NA	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.059258407	sgMsh2	cell line
chr2	70587168	70587168	A	T	ENSMUST00000094934.10	1	ENSMUSG00000070880	missense	K/M	265	Gad1	ENSMUST00000094934.10:c.794A>T	ENSMUSP00000092539.4:p.Lys265Met	H-2-Db	9	3	9	YSIMAARYM	YSIMAARYK	NetMHCpan	234.5	20281.2	86.487	187	0.037	417.172	14845.387	35.586	29434.51	437.5	20281.2	234.5	6217.560216	396.8441659	9409.574822	728.7356234	M7	0.871428571	0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.04	187	0	0	NA	2qC2	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.182333561	sgMsh2	cell line
chr2	85753673	85753673	A	AC	ENSMUST00000216831.2	3	ENSMUSG00000110879	FS	Y/YX	104	Olfr1010	ENSMUST00000216831.2:c.319dup	ENSMUSP00000151209.1:p.Leu107ProfsTer209	H-2-Db	9	200	0	YSLRNKDVK	NA	SMMPMBEC	164.274	NA	NA	307	0.127	389.992	NA	NA	NA	593.51	NA	3742.6	NA	186.4747356	NA	164.2744417	M7	-1.614285714	-1.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.127	307	0	0	NA	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.578909056	sgMsh2	cell line
chr2	36640867	36640867	T	C	ENSMUST00000076850.1	NA	ENSMUSG00000059251	missense	V/A	276	Olfr345	ENSMUST00000076850.1:c.827T>C	ENSMUSP00000076122.1:p.Val276Ala	H-2-Db	9	11	1	AMYTVVTPM	VMYTVVTPM	SMM	309.471	396.844	1.282	350	0.206	385.497	583.525	1.514	828	883.24	698.7	411.6	396.8441659	309.4710297	468.3494343	359.3933194	M7	0.857142857	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.21	350	0	0	NA	2qB	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.957251195	sgMsh2	cell line
chr2	85753673	85753673	A	AC	ENSMUST00000216831.2	3	ENSMUSG00000110879	FS	Y/YX	104	Olfr1010	ENSMUST00000216831.2:c.319dup	ENSMUSP00000151209.1:p.Leu107ProfsTer209	H-2-Kb	8	126	0	ASYLFIIV	NA	NetMHC	13.01	NA	NA	307	0.127	28.387	NA	NA	NA	13.01	NA	26.8	NA	29.97367541	NA	36.20261985	M7	2.528571429	2.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.127	307	0	0	NA	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.578909056	sgMsh2	cell line
chr2	85992650	85992650	A	G	ENSMUST00000216807.1	5	ENSMUSG00000043267	missense	T/A	278	Olfr1031	ENSMUST00000216807.1:c.832A>G	ENSMUSP00000149225.1:p.Thr278Ala	H-2-Kb	8	6	6	VAVFYATV	VAVFYTTV	NetMHCpan	13.4	24.1	1.799	172	0.134	32.721	98.991	3.025	59.07	16.83	24.1	13.4	138.9120754	48.61160944	152.6651821	52.32870654	M7	1.828571429	1.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.141	172	0	0	NA	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.642725802	sgMsh2	cell line
chr2	85923475	85923475	T	C	ENSMUST00000217615.1	5	ENSMUSG00000042863	missense	V/A	69	Olfr1026	ENSMUST00000217615.1:c.206T>C	ENSMUSP00000150995.1:p.Val69Ala	H-2-Kb	8	6	6	SHLSFADL	SHLSFVDL	NetMHC	17.51	106.99	6.11	420	0.169	52.608	151.886	2.887	106.99	17.51	226.6	124.2	142.8038776	49.40148455	160.9681675	55.81359543	M7	0.671428571	0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.164	420	0	0	NA	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.7475676	sgMsh2	cell line
chr2	36422162	36422162	A	T	ENSMUST00000216645.1	3	ENSMUSG00000094464	missense	I/F	255	Olfr339	ENSMUST00000216645.1:c.763A>T	ENSMUSP00000149068.1:p.Ile255Phe	H-2-Kb	8	4	8	VSLYYGAF	VSLYYGAI	NetMHC	20.3	8.51	0.419	360	0.219	56.21	23.161	0.412	8.51	20.3	9.7	32.3	37.73462166	94.56708451	36.62182643	80.11982647	M7	0.657142857	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	360	0	0	NA	2qB	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr2	52137428	52137428	AT	A	ENSMUST00000036934.11	5	ENSMUSG00000026950	FS	I/X	7097	Neb	ENSMUST00000036934.11:c.21289del	ENSMUSP00000047763.5:p.Ile7097SerfsTer9	H-2-Kb	8	11	1	SSVLYMTI	NA	NetMHC	21.86	NA	NA	59	0.288	84.519	NA	NA	NA	21.86	NA	31.4	NA	137.6385219	NA	137.9558114	M7	1.657142857	1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.279	59	0	0	NA	2qC1.1	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr2	85753673	85753673	A	AC	ENSMUST00000216831.2	3	ENSMUSG00000110879	FS	Y/YX	104	Olfr1010	ENSMUST00000216831.2:c.319dup	ENSMUSP00000151209.1:p.Leu107ProfsTer209	H-2-Kb	8	158	0	VTLYYGSI	NA	NetMHCpan	16.8	NA	NA	307	0.127	51.637	NA	NA	NA	26.23	NA	16.8	NA	86.04784535	NA	77.04420888	M7	0.542857143	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.127	307	0	0	NA	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.578909056	sgMsh2	cell line
chr2	36422142	36422142	T	C	ENSMUST00000216645.1	3	ENSMUSG00000094464	missense	V/A	248	Olfr339	ENSMUST00000216645.1:c.743T>C	ENSMUSP00000149068.1:p.Val248Ala	H-2-Kb	8	11	1	ASLYYGAI	VSLYYGAI	NetMHCpan	32.7	9.7	0.297	358	0.221	79.694	23.161	0.291	8.51	33.86	9.7	32.7	37.73462166	142.1477533	36.62182643	125.5278239	M7	0.9	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	358	0	0	NA	2qB	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr2	75891847	75891847	TA	T	ENSMUST00000047232.13	1	ENSMUSG00000042410	FS	L/X	460	Agps	ENSMUST00000047232.13:c.1385del	ENSMUSP00000041967.7:p.Lys462SerfsTer15	H-2-Kb	8	12	2	KSFILQSL	NA	NetMHCpan	35.3	NA	NA	87	0.253	53.579	NA	NA	NA	36.08	NA	35.3	NA	71.07878574	NA	81.98605697	M7	1.4	1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.271	87	118	3	0.025423729	2qC3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr2	83803240	83803240	A	T	ENSMUST00000028499.10	1	ENSMUSG00000027087	missense	M/L	1014	Itgav	ENSMUST00000028499.10:c.3040A>T	ENSMUSP00000028499.4:p.Met1014Leu	H-2-Kb	8	4	8	LVFVMYRL	LVFVMYRM	NetMHCpan	26.5	84.2	3.177	235	0.136	44.564	166.85	3.744	135.21	38.46	84.2	26.5	261.0597994	65.12383991	198.4906254	50.66872779	M7	1.585714286	1.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.13	235	285	28	0.098245614	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.592584073	sgMsh2	cell line
chr2	85769995	85769995	C	A	ENSMUST00000216397.2	2	ENSMUSG00000053287	missense	L/I	65	Olfr1013	ENSMUST00000216397.2:c.193C>A	ENSMUSP00000150201.1:p.Leu65Ile	H-2-Kb	8	11	1	ISFLDLGL	LSFLDLGL	SMMPMBEC	42.632	181.861	4.266	407	0.01	58.977	324.484	5.502	461.09	69.23	417.9	85.8	231.0681036	48.72367077	181.861178	42.6324214	M7	1.357142857	1.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.013	407	0	0	NA	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.059258407	sgMsh2	cell line
chr2	85753673	85753673	A	AC	ENSMUST00000216831.2	3	ENSMUSG00000110879	FS	Y/YX	104	Olfr1010	ENSMUST00000216831.2:c.319dup	ENSMUSP00000151209.1:p.Leu107ProfsTer209	H-2-Kb	8	184	0	VSVFYTVV	NA	NetMHCpan	24.1	NA	NA	307	0.127	73.785	NA	NA	NA	70.88	NA	24.1	NA	76.69022289	NA	82.55435717	M7	1.8	1.8	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.127	307	0	0	NA	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.578909056	sgMsh2	cell line
chr2	55437642	55437642	T	C	ENSMUST00000067101.9	1	ENSMUSG00000026824	missense	Y/H	148	Kcnj3	ENSMUST00000067101.9:c.442T>C	ENSMUSP00000063329.3:p.Tyr148His	H-2-Kb	8	7	5	IGYGHRYI	IGYGYRYI	NetMHCpan	87.5	14.1	0.161	95	0.168	112.821	23.035	0.204	8.7	88.95	14.1	87.5	35.29717922	136.691025	31.96980594	138.2738324	M7	-0.942857143	-0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.19	95	0	0	NA	2qC1.1	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.866084414	sgMsh2	cell line
chr2	83803240	83803240	A	T	ENSMUST00000028499.10	1	ENSMUSG00000027087	missense	M/L	1014	Itgav	ENSMUST00000028499.10:c.3040A>T	ENSMUSP00000028499.4:p.Met1014Leu	H-2-Kb	8	7	5	VMYRLGFF	VMYRMGFF	NetMHCpan	53.3	49	0.919	235	0.136	165.952	152.3	0.918	85.45	98.16	49	53.3	261.0597994	270.2340064	219.1492557	233.7437461	M7	0.728571429	0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.13	235	285	28	0.098245614	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.592584073	sgMsh2	cell line
chr2	85799973	85799973	T	A	ENSMUST00000217410.2	3	ENSMUSG00000075209	missense	Q/L	99	Olfr1016	ENSMUST00000217410.2:c.296A>T	ENSMUSP00000149631.1:p.Gln99Leu	H-2-Kb	8	11	1	LFFFSAGL	QFFFSAGL	NetMHCpan	47.8	94.6	1.979	249	0.165	89.039	120.397	1.352	127.1	103.3	94.6	47.8	113.6946424	83.51029157	192.6371303	94.56708451	M7	1.828571429	1.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.17	249	0	0	NA	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.774917634	sgMsh2	cell line
chr2	86483115	86483115	G	T	ENSMUST00000217292.2	5	ENSMUSG00000111772	missense	T/N	209	Olfr228	ENSMUST00000217292.2:c.626C>A	ENSMUSP00000149449.1:p.Thr209Asn	H-2-Kb	8	7	5	INLINSPL	INLITSPL	NetMHCpan	94.6	46.6	0.493	197	0.142	102.154	73.158	0.716	49.99	135.69	46.6	94.6	96.32521787	101.3304567	98.79614526	102.9769442	M7	0.385714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.135	197	0	0	NA	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.615375768	sgMsh2	cell line
chr2	85753673	85753673	A	AC	ENSMUST00000216831.2	3	ENSMUSG00000110879	FS	Y/YX	104	Olfr1010	ENSMUST00000216831.2:c.319dup	ENSMUSP00000151209.1:p.Leu107ProfsTer209	H-2-Kb	8	183	0	VVSVFYTV	NA	NetMHCpan	97.3	NA	NA	307	0.127	194.687	NA	NA	NA	139.49	NA	97.3	NA	249.8848923	NA	266.5262568	M7	1.8	1.8	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.127	307	0	0	NA	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.578909056	sgMsh2	cell line
chr2	36812348	36812348	A	G	ENSMUST00000213988.1	5	ENSMUSG00000075384	missense	V/A	248	Olfr3	ENSMUST00000213988.1:c.743T>C	ENSMUSP00000149118.1:p.Val248Ala	H-2-Kb	8	11	1	AALYYGSI	VALYYGSI	NetMHCpan	65.9	18.9	0.287	167	0.156	278.985	74.323	0.266	26.82	140.39	18.9	65.9	132.965815	500.8872766	121.8260042	417.5802981	M7	0.9	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.169	167	0	0	NA	2qB	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.770359295	sgMsh2	cell line
chr2	84950115	84950115	A	G	ENSMUST00000090726.5	1	ENSMUSG00000027074	missense	I/M	304	Slc43a3	ENSMUST00000090726.5:c.912A>G	ENSMUSP00000088227.5:p.Ile304Met	H-2-Kb	8	10	2	IMQLWHYL	IIQLWHYL	NetMHCpan	119.9	144.2	1.203	294	0.156	141.839	106.596	0.752	132.33	155.4	144.2	119.9	79.38528349	144.1252256	80.8611661	139.5532644	M7	0.085714286	0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.153	294	31	9	0.290322581	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.697425871	sgMsh2	cell line
chr2	85753673	85753673	A	AC	ENSMUST00000216831.2	3	ENSMUSG00000110879	FS	Y/YX	104	Olfr1010	ENSMUST00000216831.2:c.319dup	ENSMUSP00000151209.1:p.Leu107ProfsTer209	H-2-Kb	8	191	0	VIPMLNPM	NA	NetMHC	171.81	NA	NA	307	0.127	421.689	NA	NA	NA	171.81	NA	292.9	NA	550.4780419	NA	596.6779652	M7	0.771428571	1.1	FALSE	FALSE	FALSE	0	FALSE	1	Strelka2;Vardict	2	0.127	307	0	0	NA	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.578909056	sgMsh2	cell line
chr2	65763849	65763849	T	C	ENSMUST00000028377.13	5	ENSMUSG00000075318	missense	S/P	1681	Scn2a	ENSMUST00000028377.13:c.5041T>C	ENSMUSP00000028377.7:p.Ser1681Pro	H-2-Kb	8	9	3	GMPNFAYV	GMSNFAYV	NetMHC	188.79	1429.79	7.573	367	0.256	469.967	1409.455	2.999	1429.79	188.79	1598	782.9	1389.120754	518.4895408	1017.981768	421.444121	M7	0.614285714	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.252	367	0	0	NA	2qC1.3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr2	85753673	85753673	A	AC	ENSMUST00000216831.2	3	ENSMUSG00000110879	FS	Y/YX	104	Olfr1010	ENSMUST00000216831.2:c.319dup	ENSMUSP00000151209.1:p.Leu107ProfsTer209	H-2-Kb	8	17	0	LAYSECYL	NA	NetMHCpan	181.2	NA	NA	307	0.127	198.632	NA	NA	NA	192.27	NA	181.2	NA	282.3189304	NA	204.9934573	M7	0.171428571	0.171428571	FALSE	FALSE	FALSE	1	FALSE	0	Strelka2;Vardict	2	0.127	307	0	0	NA	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.578909056	sgMsh2	cell line
chr2	76732118	76732118	GT	G	ENSMUST00000111846.8	5	ENSMUSG00000051747	FS	K/X	27048	Ttn	ENSMUST00000111846.8:c.81144del	ENSMUSP00000107477.2:p.Lys27048AsnfsTer39	H-2-Kb	8	24	0	KIWKSASL	NA	SMMPMBEC	197.124	NA	NA	192	0.276	216.815	NA	NA	NA	218.48	NA	312.2	NA	215.149331	NA	197.1242255	M7	0.528571429	0.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.289	192	0	0	NA	2qC3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr2	36812348	36812348	A	G	ENSMUST00000213988.1	5	ENSMUSG00000075384	missense	V/A	248	Olfr3	ENSMUST00000213988.1:c.743T>C	ENSMUSP00000149118.1:p.Val248Ala	H-2-Kb	8	6	6	SHLSVAAL	SHLSVVAL	SMM	188.686	545.431	2.891	167	0.156	240.169	896.71	3.734	1064.4	227.56	1219.7	725.4	545.4312289	188.68614	729.0209351	252.7784229	M7	1.628571429	1.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.169	167	0	0	NA	2qB	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.770359295	sgMsh2	cell line
chr2	84950115	84950115	A	G	ENSMUST00000090726.5	1	ENSMUSG00000027074	missense	I/M	304	Slc43a3	ENSMUST00000090726.5:c.912A>G	ENSMUSP00000088227.5:p.Ile304Met	H-2-Kb	8	6	6	VWLSIMQL	VWLSIIQL	NetMHC	228.51	467.17	2.044	294	0.156	454.969	639.757	1.406	467.17	228.51	434.4	283.7	1103.417837	781.1600059	812.3440428	626.2388407	M7	1.257142857	1.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.153	294	31	9	0.290322581	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.697425871	sgMsh2	cell line
chr2	85753673	85753673	A	AC	ENSMUST00000216831.2	3	ENSMUSG00000110879	FS	Y/YX	104	Olfr1010	ENSMUST00000216831.2:c.319dup	ENSMUSP00000151209.1:p.Leu107ProfsTer209	H-2-Kb	8	106	0	QAVLYFIL	NA	NetMHC	263.65	NA	NA	307	0.127	352.33	NA	NA	NA	263.65	NA	273.4	NA	431.2608157	NA	620.4974485	M7	2.8	2.8	TRUE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.127	307	0	0	NA	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.578909056	sgMsh2	cell line
chr2	85799973	85799973	T	A	ENSMUST00000217410.2	3	ENSMUSG00000075209	missense	Q/L	99	Olfr1016	ENSMUST00000217410.2:c.296A>T	ENSMUSP00000149631.1:p.Gln99Leu	H-2-Kb	8	9	3	VALFFFSA	VAQFFFSA	NetMHCpan	119	226.9	1.907	249	0.165	194.024	494.393	2.548	849.18	276.29	226.9	119	475.0507412	198.4906254	513.7360001	189.5570756	M7	2.142857143	2.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.17	249	0	0	NA	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.774917634	sgMsh2	cell line
chr2	84612086	84612086	CT	C	ENSMUST00000189772.1	5	ENSMUSG00000101645	FS	K/X	634	Gm28635	ENSMUST00000189772.1:c.1901del	ENSMUSP00000141166.1:p.Lys634SerfsTer48	H-2-Kb	8	42	0	CEYTFHSL	NA	SMM	67.103	NA	NA	225	0.249	164.226	NA	NA	NA	320.59	NA	242.8	NA	67.10270075	NA	85.65249141	M7	-0.414285714	-0.414285714	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.226	225	529	0	0	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	1	sgMsh2	cell line
chr2	86413389	86413389	A	G	ENSMUST00000099889.1	NA	ENSMUSG00000075185	missense	I/T	221	Olfr1061	ENSMUST00000099889.1:c.662T>C	ENSMUSP00000097474.1:p.Ile221Thr	H-2-Kb	8	6	6	GSYLLTLM	GSYLLILM	NetMHCpan	240.2	630.1	2.623	216	0.125	395.488	652.905	1.651	675.71	344.56	630.1	240.2	696.209588	630.579721	512.5544401	446.4162552	M7	1.5	1.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.136	216	0	0	NA	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.619934107	sgMsh2	cell line
chr2	36640867	36640867	T	C	ENSMUST00000076850.1	NA	ENSMUSG00000059251	missense	V/A	276	Olfr345	ENSMUST00000076850.1:c.827T>C	ENSMUSP00000076122.1:p.Val276Ala	H-2-Kb	8	9	3	VAAMYTVV	VAVMYTVV	NetMHCpan	134.4	75.6	0.562	350	0.206	346.666	148.146	0.427	95.04	349.98	75.6	134.4	231.0681036	343.3523309	201.251905	390.6069803	M7	1.7	1.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.21	350	0	0	NA	2qB	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.957251195	sgMsh2	cell line
chr2	85753673	85753673	A	AC	ENSMUST00000216831.2	3	ENSMUSG00000110879	FS	Y/YX	104	Olfr1010	ENSMUST00000216831.2:c.319dup	ENSMUSP00000151209.1:p.Leu107ProfsTer209	H-2-Kb	8	122	0	VLILASYL	NA	NetMHCpan	203.5	NA	NA	307	0.127	318.606	NA	NA	NA	421.64	NA	203.5	NA	321.1737185	NA	316.0385059	M7	2.228571429	2.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.127	307	0	0	NA	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.578909056	sgMsh2	cell line
chr2	73568222	73568222	A	G	ENSMUST00000028515.3	1	ENSMUSG00000027107	missense	V/A	291	Chrna1	ENSMUST00000028515.3:c.872T>C	ENSMUSP00000028515.3:p.Val291Ala	H-2-Kb	8	6	6	STSSAAPL	STSSAVPL	SMM	311.702	901.032	2.891	110	0.245	403.465	1443.597	3.578	1873.89	455.58	2427.9	1290.8	901.0315536	311.7022951	1013.304567	351.3500341	M7	0.5	0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.255	110	6	0	0	2qC3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr2	86170996	86170996	C	T	ENSMUST00000215171.1	5	ENSMUSG00000075200	missense	A/T	274	Olfr1044	ENSMUST00000215171.1:c.820G>A	ENSMUSP00000150199.1:p.Ala274Thr	H-2-Kb	8	10	2	MTSVFYTV	MASVFYTV	NetMHCpan	238.2	211.8	0.889	219	0.142	362.779	490.422	1.352	456.35	458.08	211.8	238.2	524.4933667	339.4220093	610.5763804	386.1357391	M7	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.146	219	0	0	NA	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.665517497	sgMsh2	cell line
chr2	76732118	76732118	GT	G	ENSMUST00000111846.8	5	ENSMUSG00000051747	FS	K/X	27048	Ttn	ENSMUST00000111846.8:c.81144del	ENSMUSP00000107477.2:p.Lys27048AsnfsTer39	H-2-Kb	8	29	0	ASLQLPKL	NA	SMMPMBEC	291.568	NA	NA	192	0.276	323.533	NA	NA	NA	467.13	NA	352.8	NA	294.2659418	NA	291.5680954	M7	0.228571429	0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.289	192	0	0	NA	2qC3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr2	86170996	86170996	C	T	ENSMUST00000215171.1	5	ENSMUSG00000075200	missense	A/T	274	Olfr1044	ENSMUST00000215171.1:c.820G>A	ENSMUSP00000150199.1:p.Ala274Thr	H-2-Kb	8	11	1	TSVFYTVI	ASVFYTVI	NetMHCpan	83.2	92.1	1.107	219	0.142	383.911	486.485	1.267	737.68	618.3	92.1	83.2	524.4933667	415.6616909	448.476819	352.1599796	M7	1.842857143	1.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.146	219	0	0	NA	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.665517497	sgMsh2	cell line
chr2	36907557	36907557	A	G	ENSMUST00000217479.1	5	ENSMUSG00000055088	missense	T/A	204	Olfr354	ENSMUST00000217479.1:c.610A>G	ENSMUSP00000149298.1:p.Thr204Ala	H-2-Kb	8	10	2	IAMGLVFL	ITMGLVFL	NetMHCpan	258.7	288.5	1.115	212	0.193	446.648	303.365	0.679	858.67	783.84	288.5	258.7	318.2291802	491.7450535	253.9451951	401.5503419	M7	2.557142857	2.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	212	0	0	NA	2qB	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.911667805	sgMsh2	cell line
chr2	86041629	86041629	C	A	ENSMUST00000218397.1	5	ENSMUSG00000045392	missense	L/I	105	Olfr1033	ENSMUST00000218397.1:c.313C>A	ENSMUSP00000151539.1:p.Leu105Ile	H-2-Kb	8	4	8	QCFFFIAI	QCFFFIAL	SMMPMBEC	446.416	77.757	0.174	688	0.013	487.766	109.729	0.225	265.63	1379.66	141.7	507	72.2337231	468.5328006	77.75709016	446.4162552	M7	3.1	3.1	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.016	688	0	0	NA	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.072933424	sgMsh2	cell line
chr2	85992650	85992650	A	G	ENSMUST00000216807.1	5	ENSMUSG00000043267	missense	T/A	278	Olfr1031	ENSMUST00000216807.1:c.832A>G	ENSMUSP00000149225.1:p.Thr278Ala	H-2-Kb	9	5	7	MVAVFYATV	MVAVFYTTV	NetMHC	21.24	59.05	2.78	172	0.134	68.278	97.929	1.434	59.05	21.24	49.9	34.2	136.8075294	102.3552209	205.7074402	151.0949676	M7	1.828571429	2.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.141	172	0	0	NA	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.642725802	sgMsh2	cell line
chr2	85753673	85753673	A	AC	ENSMUST00000216831.2	3	ENSMUSG00000110879	FS	Y/YX	104	Olfr1010	ENSMUST00000216831.2:c.319dup	ENSMUSP00000151209.1:p.Leu107ProfsTer209	H-2-Kb	9	28	0	MAYDRYVAI	NA	NetMHCpan	14.4	NA	NA	307	0.127	30.259	NA	NA	NA	27.08	NA	14.4	NA	39.27443988	NA	33.43874735	M7	-0.014285714	-0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.127	307	0	0	NA	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.578909056	sgMsh2	cell line
chr2	85799973	85799973	T	A	ENSMUST00000217410.2	3	ENSMUSG00000075209	missense	Q/L	99	Olfr1016	ENSMUST00000217410.2:c.296A>T	ENSMUSP00000149631.1:p.Gln99Leu	H-2-Kb	9	10	2	ALFFFSAGL	AQFFFSAGL	NetMHCpan	19.9	13.5	0.678	249	0.165	88.676	58.879	0.664	12.74	27.69	13.5	19.9	104.2581466	149.6614677	137.1671136	173.0812408	M7	1.828571429	2.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.17	249	0	0	NA	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.774917634	sgMsh2	cell line
chr2	36812348	36812348	A	G	ENSMUST00000213988.1	5	ENSMUSG00000075384	missense	V/A	248	Olfr3	ENSMUST00000213988.1:c.743T>C	ENSMUSP00000149118.1:p.Val248Ala	H-2-Kb	9	10	2	VAALYYGSI	VVALYYGSI	NetMHCpan	20.5	30.8	1.502	167	0.156	51.603	61.652	1.195	40.87	30.05	30.8	20.5	82.43468827	73.30101696	84.57655669	73.15600821	M7	0.9	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.169	167	0	0	NA	2qB	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.770359295	sgMsh2	cell line
chr2	36422162	36422162	A	T	ENSMUST00000216645.1	3	ENSMUSG00000094464	missense	I/F	255	Olfr339	ENSMUST00000216645.1:c.763A>T	ENSMUSP00000149068.1:p.Ile255Phe	H-2-Kb	9	4	8	VSLYYGAFI	VSLYYGAII	NetMHCpan	33.9	59	1.74	360	0.219	143.531	163.782	1.141	101.49	43.14	59	33.9	247.8049629	289.8077532	226.073678	243.9214539	M7	1.414285714	1.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	360	0	0	NA	2qB	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr2	35422190	35422190	A	G	ENSMUST00000102794.7	1	ENSMUSG00000035778	missense	Y/H	59	Ggta1	ENSMUST00000102794.7:c.175T>C	ENSMUSP00000099858.1:p.Tyr59His	H-2-Kb	9	4	8	VVVVFWEHV	VVVVFWEYV	NetMHC	48.89	78.19	1.599	121	0.223	111.82	155.423	1.39	78.19	48.89	170.7	86.2	143.2550696	137.4390042	167.5907328	153.196908	M7	1.114285714	2.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.209	121	165	33	0.2	2qB	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.952692856	sgMsh2	cell line
chr2	36422142	36422142	T	C	ENSMUST00000216645.1	3	ENSMUSG00000094464	missense	V/A	248	Olfr339	ENSMUST00000216645.1:c.743T>C	ENSMUSP00000149068.1:p.Val248Ala	H-2-Kb	9	10	2	VASLYYGAI	VVSLYYGAI	NetMHCpan	41.6	59.5	1.43	358	0.221	87.035	105.607	1.213	66.92	49.26	59.5	41.6	164.1005362	145.9183802	144.2945739	124.8101773	M7	0.9	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	358	0	0	NA	2qB	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr2	85923475	85923475	T	C	ENSMUST00000217615.1	5	ENSMUSG00000042863	missense	V/A	69	Olfr1026	ENSMUST00000217615.1:c.206T>C	ENSMUSP00000150995.1:p.Val69Ala	H-2-Kb	9	5	7	LSHLSFADL	LSHLSFVDL	NetMHC	57.08	299.86	5.253	420	0.169	205.392	360.403	1.755	299.86	57.08	324.3	118.2	520.1277201	360.6699835	396.5062159	292.583614	M7	0.671428571	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.164	420	0	0	NA	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.7475676	sgMsh2	cell line
chr2	85799973	85799973	T	A	ENSMUST00000217410.2	3	ENSMUSG00000075209	missense	Q/L	99	Olfr1016	ENSMUST00000217410.2:c.296A>T	ENSMUSP00000149631.1:p.Gln99Leu	H-2-Kb	9	3	9	ISFASCVAL	ISFASCVAQ	NetMHCpan	41.2	6248.9	151.672	249	0.165	118.535	2718.814	22.937	4304.94	70.25	6248.9	41.2	1132.687219	216.825322	783.8807509	166.8207233	M7	2.3	2.3	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.17	249	0	0	NA	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.774917634	sgMsh2	cell line
chr2	70587168	70587168	A	T	ENSMUST00000094934.10	1	ENSMUSG00000070880	missense	K/M	265	Gad1	ENSMUST00000094934.10:c.794A>T	ENSMUSP00000092539.4:p.Lys265Met	H-2-Kb	9	8	4	ARYMYFPEV	ARYKYFPEV	NetMHC	82.97	133.59	1.61	187	0.037	106.131	150.315	1.416	133.59	82.97	153.7	83.7	146.9298381	128.5612244	159.312554	130.3917158	M7	0.171428571	0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.04	187	0	0	NA	2qC2	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.182333561	sgMsh2	cell line
chr2	70587168	70587168	A	T	ENSMUST00000094934.10	1	ENSMUSG00000070880	missense	K/M	265	Gad1	ENSMUST00000094934.10:c.794A>T	ENSMUSP00000092539.4:p.Lys265Met	H-2-Kb	9	5	7	IMAARYMYF	IMAARYKYF	SMM	51.063	83.006	1.626	187	0.037	59.85	145.343	2.428	215.67	87.47	198.8	60.1	83.00609824	51.06343193	91.88613834	59.60051329	M7	0.171428571	0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.04	187	0	0	NA	2qC2	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.182333561	sgMsh2	cell line
chr2	71421695	71421695	T	C	ENSMUST00000028408.2	1	ENSMUSG00000027018	missense	V/A	257	Hat1	ENSMUST00000028408.2:c.770T>C	ENSMUSP00000028408.2:p.Val257Ala	H-2-Kb	9	10	2	TAHRYYISF	TVHRYYISF	NetMHCpan	47.9	55.5	1.159	66	0.227	103.154	124.62	1.208	116.73	91.69	55.5	47.9	142.5968723	126.7972983	132.5104107	114.6172542	M7	-0.542857143	-0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	66	187	59	0.315508021	2qC2	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr2	36422162	36422162	A	T	ENSMUST00000216645.1	3	ENSMUSG00000094464	missense	I/F	255	Olfr339	ENSMUST00000216645.1:c.763A>T	ENSMUSP00000149068.1:p.Ile255Phe	H-2-Kb	9	3	9	VVSLYYGAF	VVSLYYGAI	NetMHC	95.95	66.92	0.697	360	0.219	109.707	105.607	0.963	66.92	95.95	59.5	150.8	164.1005362	111.4576803	144.2945739	107.9567993	M7	0.657142857	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	360	0	0	NA	2qB	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr2	85753673	85753673	A	AC	ENSMUST00000216831.2	3	ENSMUSG00000110879	FS	Y/YX	104	Olfr1010	ENSMUST00000216831.2:c.319dup	ENSMUSP00000151209.1:p.Leu107ProfsTer209	H-2-Kb	9	158	0	VTLYYGSIL	NA	NetMHCpan	54.6	NA	NA	307	0.127	138.762	NA	NA	NA	98.83	NA	54.6	NA	178.6940122	NA	188.039895	M7	1.185714286	1.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.127	307	0	0	NA	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.578909056	sgMsh2	cell line
chr2	84950115	84950115	A	G	ENSMUST00000090726.5	1	ENSMUSG00000027074	missense	I/M	304	Slc43a3	ENSMUST00000090726.5:c.912A>G	ENSMUSP00000088227.5:p.Ile304Met	H-2-Kb	9	5	7	VVWLSIMQL	VVWLSIIQL	NetMHC	111.02	203.8	1.836	294	0.156	213.688	249.939	1.17	203.8	111.02	467.5	197.1	271.7127388	263.6999212	228.165512	230.2767015	M7	1.257142857	2.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.153	294	31	9	0.290322581	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.697425871	sgMsh2	cell line
chr2	85753673	85753673	A	AC	ENSMUST00000216831.2	3	ENSMUSG00000110879	FS	Y/YX	104	Olfr1010	ENSMUST00000216831.2:c.319dup	ENSMUSP00000151209.1:p.Leu107ProfsTer209	H-2-Kb	9	183	0	VVSVFYTVV	NA	NetMHCpan	61.7	NA	NA	307	0.127	133.194	NA	NA	NA	120.47	NA	61.7	NA	145.9183802	NA	157.8519677	M7	1.8	1.8	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.127	307	0	0	NA	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.578909056	sgMsh2	cell line
chr2	85753673	85753673	A	AC	ENSMUST00000216831.2	3	ENSMUSG00000110879	FS	Y/YX	104	Olfr1010	ENSMUST00000216831.2:c.319dup	ENSMUSP00000151209.1:p.Leu107ProfsTer209	H-2-Kb	9	190	0	VVIPMLNPM	NA	SMM	119.98	NA	NA	307	0.127	129.345	NA	NA	NA	129.49	NA	129.2	NA	119.9803156	NA	172.2860048	M7	0.771428571	1.928571429	FALSE	FALSE	FALSE	0	FALSE	1	Strelka2;Vardict	2	0.127	307	0	0	NA	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.578909056	sgMsh2	cell line
chr2	36640867	36640867	T	C	ENSMUST00000076850.1	NA	ENSMUSG00000059251	missense	V/A	276	Olfr345	ENSMUST00000076850.1:c.827T>C	ENSMUSP00000076122.1:p.Val276Ala	H-2-Kb	9	11	1	AMYTVVTPM	VMYTVVTPM	NetMHCpan	76.7	26.3	0.343	350	0.206	166.153	57.965	0.349	44.11	134.04	26.3	76.7	72.79641631	216.3266376	71.82076058	198.2668013	M7	0.857142857	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.21	350	0	0	NA	2qB	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.957251195	sgMsh2	cell line
chr2	85992650	85992650	A	G	ENSMUST00000216807.1	5	ENSMUSG00000043267	missense	T/A	278	Olfr1031	ENSMUST00000216807.1:c.832A>G	ENSMUSP00000149225.1:p.Thr278Ala	H-2-Kb	9	8	4	VFYATVIPM	VFYTTVIPM	NetMHC	137.36	118.27	0.861	172	0.134	179.666	154.842	0.862	118.27	137.36	201.1	217.1	133.3859235	149.3172559	176.2990613	210.0148478	M7	1.257142857	2.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.141	172	0	0	NA	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.642725802	sgMsh2	cell line
chr2	36890485	36890485	T	C	ENSMUST00000217215.2	5	ENSMUSG00000075382	missense	Y/C	121	Olfr353	ENSMUST00000217215.2:c.362A>G	ENSMUSP00000149378.1:p.Tyr121Cys	H-2-Kb	9	6	6	MAYDRCVAI	MAYDRYVAI	NetMHCpan	132.7	14.4	0.109	299	0.184	145.305	30.259	0.208	27.08	145.65	14.4	132.7	39.27443988	184.1238299	33.43874735	144.9606074	M7	0.528571429	0.528571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.185	299	0	0	NA	2qB	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.843292719	sgMsh2	cell line
chr2	86413389	86413389	A	G	ENSMUST00000099889.1	NA	ENSMUSG00000075185	missense	I/T	221	Olfr1061	ENSMUST00000099889.1:c.662T>C	ENSMUSP00000097474.1:p.Ile221Thr	H-2-Kb	9	4	8	VIGSYLLTL	VIGSYLLIL	SMM	122.211	136.493	1.117	216	0.125	152.006	309.51	2.036	430.98	165.99	438.2	144.7	136.4928808	122.2109162	188.039895	159.312554	M7	1.171428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.136	216	0	0	NA	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.619934107	sgMsh2	cell line
chr2	36422162	36422162	A	T	ENSMUST00000216645.1	3	ENSMUSG00000094464	missense	I/F	255	Olfr339	ENSMUST00000216645.1:c.763A>T	ENSMUSP00000149068.1:p.Ile255Phe	H-2-Kb	9	6	6	LYYGAFIGL	LYYGAIIGL	SMM	119.154	421.803	3.54	360	0.219	154.202	569.436	3.693	766.3	168.39	604	152	421.8033261	119.1543769	534.872168	156.4047722	M7	1.542857143	1.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	360	0	0	NA	2qB	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr2	85753673	85753673	A	AC	ENSMUST00000216831.2	3	ENSMUSG00000110879	FS	Y/YX	104	Olfr1010	ENSMUST00000216831.2:c.319dup	ENSMUSP00000151209.1:p.Leu107ProfsTer209	H-2-Kb	9	157	0	AVTLYYGSI	NA	NetMHCpan	156.6	NA	NA	307	0.127	240.43	NA	NA	NA	170.94	NA	156.6	NA	356.5414284	NA	309.920283	M7	0.542857143	0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.127	307	0	0	NA	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.578909056	sgMsh2	cell line
chr2	76713049	76713049	T	C	ENSMUST00000111846.8	5	ENSMUSG00000051747	missense	T/A	31452	Ttn	ENSMUST00000111846.8:c.94354A>G	ENSMUSP00000107477.2:p.Thr31452Ala	H-2-Kb	9	11	1	AAPEYYAPE	TAPEYYAPE	NetMHC	172.14	138.74	0.806	179	0.207	194.053	159.64	0.823	138.74	172.14	746	697.8	170.2589693	200.4979793	149.021867	187.6074152	M7	-1.571428571	-0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.213	179	0	0	NA	2qC3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.970926212	sgMsh2	cell line
chr2	85753673	85753673	A	AC	ENSMUST00000216831.2	3	ENSMUSG00000110879	FS	Y/YX	104	Olfr1010	ENSMUST00000216831.2:c.319dup	ENSMUSP00000151209.1:p.Leu107ProfsTer209	H-2-Kb	9	55	0	VAASYLGGF	NA	SMM	135.866	NA	NA	307	0.127	189.636	NA	NA	NA	173.09	NA	243.3	NA	135.865753	NA	206.1816449	M7	0.785714286	1.3	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.127	307	0	0	NA	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.578909056	sgMsh2	cell line
chr2	84950115	84950115	A	G	ENSMUST00000090726.5	1	ENSMUSG00000027074	missense	I/M	304	Slc43a3	ENSMUST00000090726.5:c.912A>G	ENSMUSP00000088227.5:p.Ile304Met	H-2-Kb	9	9	3	SIMQLWHYL	SIIQLWHYL	NetMHCpan	84.8	103.9	1.225	294	0.156	277.551	298.338	1.075	197.55	186.03	103.9	84.8	399.1259819	369.0710667	402.0221668	382.1641989	M7	0.085714286	0.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.153	294	31	9	0.290322581	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.697425871	sgMsh2	cell line
chr2	52105483	52105483	C	T	ENSMUST00000112693.9	5	ENSMUSG00000036202	missense	L/F	905	Rif1	ENSMUST00000112693.9:c.2713C>T	ENSMUSP00000108313.2:p.Leu905Phe	H-2-Kb	9	3	9	VACLQFSYF	VACLQFSYL	NetMHC	191.1	33.73	0.177	147	0.252	209.082	96.414	0.461	33.73	191.1	75	428	127.0895963	214.3433431	117.8284053	203.8215031	M7	0.9	1.542857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.273	147	89	6	0.06741573	2qC1.1	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr2	85753673	85753673	A	AC	ENSMUST00000216831.2	3	ENSMUSG00000110879	FS	Y/YX	104	Olfr1010	ENSMUST00000216831.2:c.319dup	ENSMUSP00000151209.1:p.Leu107ProfsTer209	H-2-Kb	9	17	0	LAYSECYLL	NA	SMM	163.347	NA	NA	307	0.127	204.235	NA	NA	NA	193.67	NA	214.8	NA	163.3465627	NA	265.6134116	M7	0.457142857	0.457142857	FALSE	FALSE	FALSE	1	FALSE	0	Strelka2;Vardict	2	0.127	307	0	0	NA	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.578909056	sgMsh2	cell line
chr2	86509001	86509001	G	T	ENSMUST00000076263.1	NA	ENSMUSG00000060742	missense	G/C	181	Olfr1076	ENSMUST00000076263.1:c.541G>T	ENSMUSP00000075612.1:p.Gly181Cys	H-2-Kb	9	4	8	ISHFYCDCL	ISHFYCDGL	NetMHC	209.95	51.38	0.245	303	0.158	234.051	114.31	0.488	51.38	209.95	61.8	252.7	206.1151905	335.8226621	166.8207233	215.4021332	M7	0.514285714	0.514285714	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.153	303	0	0	NA	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.697425871	sgMsh2	cell line
chr2	85753673	85753673	A	AC	ENSMUST00000216831.2	3	ENSMUSG00000110879	FS	Y/YX	104	Olfr1010	ENSMUST00000216831.2:c.319dup	ENSMUSP00000151209.1:p.Leu107ProfsTer209	H-2-Kb	9	83	0	IIDDFFCDL	NA	NetMHC	212.5	NA	NA	307	0.127	268.611	NA	NA	NA	212.5	NA	423.1	NA	290.4758291	NA	246.7459312	M7	0.2	1.442857143	FALSE	FALSE	FALSE	1	FALSE	0	Strelka2;Vardict	2	0.127	307	0	0	NA	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.578909056	sgMsh2	cell line
chr2	84950115	84950115	A	G	ENSMUST00000090726.5	1	ENSMUSG00000027074	missense	I/M	304	Slc43a3	ENSMUST00000090726.5:c.912A>G	ENSMUSP00000088227.5:p.Ile304Met	H-2-Kb	9	10	2	IMQLWHYLF	IIQLWHYLF	SMM	204.226	457.204	2.239	294	0.156	253.849	513.192	2.022	403.83	232.75	1346.5	723	457.2039776	204.225515	569.1804832	274.9476424	M7	0.214285714	0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.153	294	31	9	0.290322581	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.697425871	sgMsh2	cell line
chr2	85769995	85769995	C	A	ENSMUST00000216397.2	2	ENSMUSG00000053287	missense	L/I	65	Olfr1013	ENSMUST00000216397.2:c.193C>A	ENSMUSP00000150201.1:p.Leu65Ile	H-2-Kb	9	3	9	PMYFFIGNI	PMYFFIGNL	SMM	90.388	36.401	0.403	407	0.01	171.323	61.224	0.357	75.54	234.19	89.6	408.3	36.40072218	90.3878383	46.90833305	108.4551052	M7	1.342857143	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.013	407	0	0	NA	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.059258407	sgMsh2	cell line
chr2	44752203	44752203	A	G	ENSMUST00000112810.7	1	ENSMUSG00000036890	missense	V/A	122	Gtdc1	ENSMUST00000112810.7:c.365T>C	ENSMUSP00000108429.1:p.Val122Ala	H-2-Kb	9	11	1	AVFNSSFNM	VVFNSSFNM	NetMHCpan	229.4	64.8	0.282	115	0.2	379.434	130.193	0.343	103.31	292.09	64.8	229.4	157.0760603	466.7775928	232.9431801	643.0577846	M7	-0.157142857	0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.205	115	13	2	0.153846154	2qB	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.9344595	sgMsh2	cell line
chr2	83803240	83803240	A	T	ENSMUST00000028499.10	1	ENSMUSG00000027087	missense	M/L	1014	Itgav	ENSMUST00000028499.10:c.3040A>T	ENSMUSP00000028499.4:p.Met1014Leu	H-2-Kb	9	5	7	VFVMYRLGF	VFVMYRMGF	NetMHC	295.03	169.93	0.576	235	0.136	362.064	348.471	0.962	169.93	295.03	481.2	705.8	331.9785319	354.0870144	364.9639766	370.0411313	M7	0.928571429	1.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.13	235	285	28	0.098245614	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.592584073	sgMsh2	cell line
chr2	85753673	85753673	A	AC	ENSMUST00000216831.2	3	ENSMUSG00000110879	FS	Y/YX	104	Olfr1010	ENSMUST00000216831.2:c.319dup	ENSMUSP00000151209.1:p.Leu107ProfsTer209	H-2-Kb	9	186	0	VFYTVVIPM	NA	SMMPMBEC	221.437	NA	NA	307	0.127	264.61	NA	NA	NA	303.22	NA	372.3	NA	226.0008122	NA	221.4369036	M7	1.6	2.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.127	307	0	0	NA	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.578909056	sgMsh2	cell line
chr2	84612086	84612086	CT	C	ENSMUST00000189772.1	5	ENSMUSG00000101645	FS	K/X	634	Gm28635	ENSMUST00000189772.1:c.1901del	ENSMUSP00000141166.1:p.Lys634SerfsTer48	H-2-Kb	9	22	0	ISLKELVLL	NA	NetMHCpan	270.3	NA	NA	225	0.249	297.293	NA	NA	NA	304.61	NA	270.3	NA	295.876178	NA	298.7101638	M7	1.714285714	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.226	225	529	0	0	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	1	sgMsh2	cell line
chr2	85799973	85799973	T	A	ENSMUST00000217410.2	3	ENSMUSG00000075209	missense	Q/L	99	Olfr1016	ENSMUST00000217410.2:c.296A>T	ENSMUSP00000149631.1:p.Gln99Leu	H-2-Kb	9	9	3	VALFFFSAG	VAQFFFSAG	SMMPMBEC	123.381	326.024	2.642	249	0.165	160.728	366.586	2.281	661.85	317.36	395.8	189.9	337.3727491	131.5558	326.0243217	123.381487	M7	1.828571429	2.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.17	249	0	0	NA	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.774917634	sgMsh2	cell line
chr2	86041629	86041629	C	A	ENSMUST00000218397.1	5	ENSMUSG00000045392	missense	L/I	105	Olfr1033	ENSMUST00000218397.1:c.313C>A	ENSMUSP00000151539.1:p.Leu105Ile	H-2-Kb	9	3	9	VQCFFFIAI	VQCFFFIAL	NetMHCpan	197.1	78.9	0.4	688	0.013	281.659	98.304	0.349	96.55	422.97	78.9	197.1	133.6934098	331.9785319	100.0575812	231.3396105	M7	3.1	3.1	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.016	688	0	0	NA	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.072933424	sgMsh2	cell line
chr2	85868829	85868829	C	CA	ENSMUST00000054736.3	NA	ENSMUSG00000057761	FS	P/PX	79	Olfr1022	ENSMUST00000054736.3:c.239dup	ENSMUSP00000059312.3:p.Asn80LysfsTer32	H-2-Kb	9	28	0	WMLHTVSPL	NA	SMM	450.931	NA	NA	632	0.144	489.579	NA	NA	NA	460.06	NA	635.3	NA	450.9309038	NA	519.0987702	M7	0.785714286	0.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.144	632	0	0	NA	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.656400819	sgMsh2	cell line
chr2	86170996	86170996	C	T	ENSMUST00000215171.1	5	ENSMUSG00000075200	missense	A/T	274	Olfr1044	ENSMUST00000215171.1:c.820G>A	ENSMUSP00000150199.1:p.Ala274Thr	H-2-Kb	9	10	2	MTSVFYTVI	MASVFYTVI	NetMHCpan	104.1	93.9	0.902	219	0.142	488.601	366.17	0.749	403.78	514.62	93.9	104.1	367.3753391	505.9527957	364.9639766	471.2485208	M7	1.842857143	1.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.146	219	0	0	NA	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.665517497	sgMsh2	cell line
chr2	85992650	85992650	A	G	ENSMUST00000216807.1	5	ENSMUSG00000043267	missense	T/A	278	Olfr1031	ENSMUST00000216807.1:c.832A>G	ENSMUSP00000149225.1:p.Thr278Ala	H-2-Kb	9	6	6	VAVFYATVI	VAVFYTTVI	NetMHCpan	175.4	167.6	0.956	172	0.134	483.786	359.921	0.744	537.74	595.09	167.6	175.4	405.6112574	529.7976163	314.2317036	437.7740356	M7	2.214285714	2.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.141	172	0	0	NA	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.642725802	sgMsh2	cell line
chr2	85753673	85753673	A	AC	ENSMUST00000216831.2	3	ENSMUSG00000110879	FS	Y/YX	104	Olfr1010	ENSMUST00000216831.2:c.319dup	ENSMUSP00000151209.1:p.Leu107ProfsTer209	H-2-Kb	9	184	0	VSVFYTVVI	NA	NetMHCpan	188.9	NA	NA	307	0.127	304.563	NA	NA	NA	644.58	NA	188.9	NA	360.6699835	NA	248.4562923	M7	2.557142857	2.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.127	307	0	0	NA	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.578909056	sgMsh2	cell line
chr2	36640867	36640867	T	C	ENSMUST00000076850.1	NA	ENSMUSG00000059251	missense	V/A	276	Olfr345	ENSMUST00000076850.1:c.827T>C	ENSMUSP00000076122.1:p.Val276Ala	H-2-Kb	9	8	4	IVAAMYTVV	IVAVMYTVV	NetMHCpan	358.8	357.5	0.996	350	0.206	385.663	317.816	0.824	510.51	798.37	357.5	358.8	246.6664026	390.0407654	278.131386	381.2852457	M7	1.7	1.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.21	350	0	0	NA	2qB	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.957251195	sgMsh2	cell line
chr2	85753673	85753673	A	AC	ENSMUST00000216831.2	3	ENSMUSG00000110879	FS	Y/YX	104	Olfr1010	ENSMUST00000216831.2:c.319dup	ENSMUSP00000151209.1:p.Leu107ProfsTer209	H-2-Kb	9	6	9	AQFFFYPPP	AQFFFYPPL	SMM	93.996	20.376	0.217	307	0.127	340.744	13.783	0.04	7.19	1056.23	5.9	524	20.37558094	93.99613579	21.39193154	157.4889183	M7	0.328571429	0.542857143	FALSE	FALSE	TRUE	0	FALSE	0	Strelka2;Vardict	2	0.127	307	0	0	NA	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.578909056	sgMsh2	cell line
chr2	90139121	90139121	A	C	ENSMUST00000215153.2	2	ENSMUSG00000075066	missense	V/G	6	Olfr32	ENSMUST00000215153.2:c.17T>G	ENSMUSP00000150246.1:p.Val6Gly	H-2-Db	9	1	6	MAFVNGTEL	MAFVNVTEL	NetMHCpan	5.5	5.1	0.927	340	0.179	14.228	13.219	0.929	9.55	8.2	5.1	5.5	20.21249847	23.04729708	16.88768035	20.25676081	M7	0.385714286	0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.184	340	0	0	NA	2qE1	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.83873438	sgMsh2	cell line
chr2	89055070	89055070	A	T	ENSMUST00000215048.1	5	ENSMUSG00000075105	missense	Y/N	119	Olfr1218	ENSMUST00000215048.1:c.355T>A	ENSMUSP00000149171.1:p.Tyr119Asn	H-2-Db	9	7	5	AAMANDRYV	AAMAYDRYV	NetMHCpan	16.4	1992.3	121.482	333	0.18	26.573	2444.88	92.006	9677.22	16.45	1992.3	16.4	2150.898913	36.69610755	2738.861051	50.88268262	M7	-0.7	-0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.179	333	0	0	NA	2qE1	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.815942685	sgMsh2	cell line
chr2	88987741	88987741	G	A	ENSMUST00000216026.1	5	ENSMUSG00000075110	missense	H/Y	154	Olfr1214	ENSMUST00000216026.1:c.460C>T	ENSMUSP00000149049.1:p.His154Tyr	H-2-Db	9	11	1	YSIIQIAFI	HSIIQIAFI	NetMHC	94.81	1274.73	13.445	281	0.021	152.621	754.394	4.943	1274.73	94.81	652.5	97	856.2882802	301.037085	515.9053125	208.2428026	M7	2.728571429	2.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.026	281	0	0	NA	2qE1	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.118516815	sgMsh2	cell line
chr2	87418564	87418564	CA	C	ENSMUST00000054974.1	NA	ENSMUSG00000043274	FS	Q/X	172	Olfr1123	ENSMUST00000054974.1:c.517del	ENSMUSP00000058786.1:p.Thr173HisfsTer35	H-2-Db	9	34	0	HQYSNLLVV	NA	NetMHC	103.9	NA	NA	354	0.144	214.459	NA	NA	NA	103.9	NA	140.8	NA	292.8329887	NA	288.1177403	M7	1.485714286	1.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.142	354	0	0	NA	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.647284141	sgMsh2	cell line
chr2	87418564	87418564	CA	C	ENSMUST00000054974.1	NA	ENSMUSG00000043274	FS	Q/X	172	Olfr1123	ENSMUST00000054974.1:c.517del	ENSMUSP00000058786.1:p.Thr173HisfsTer35	H-2-Db	9	15	0	FSLCLFVAL	NA	NetMHC	117.88	NA	NA	354	0.144	212.776	NA	NA	NA	117.88	NA	482.2	NA	196.1643123	NA	229.387633	M7	3.242857143	3.242857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.142	354	0	0	NA	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.647284141	sgMsh2	cell line
chr2	87802800	87802800	C	T	ENSMUST00000090708.1	NA	ENSMUSG00000068815	missense	T/I	137	Olfr1143	ENSMUST00000090708.1:c.410C>T	ENSMUSP00000088210.1:p.Thr137Ile	H-2-Db	10	2	10	QAISNPLLYI	QAISNPLLYT	NetMHC	29.98	1996.39	66.591	327	0.156	271.095	2118.552	7.815	1996.39	29.98	3906.9	51	2158.986864	491.1905468	2078.117023	633.3882463	M7	0.7	1.142857143	TRUE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.157	327	0	0	NA	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.715659227	sgMsh2	cell line
chr2	87418564	87418564	CA	C	ENSMUST00000054974.1	NA	ENSMUSG00000043274	FS	Q/X	172	Olfr1123	ENSMUST00000054974.1:c.517del	ENSMUSP00000058786.1:p.Thr173HisfsTer35	H-2-Kb	8	32	0	ISHQYSNL	NA	NetMHC	3.34	NA	NA	354	0.144	3.438	NA	NA	NA	3.34	NA	5.1	NA	3.505419514	NA	3.370854446	M7	-1.328571429	-1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.142	354	0	0	NA	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.647284141	sgMsh2	cell line
chr2	91167871	91167871	A	C	ENSMUST00000066473.11	5	ENSMUSG00000040687	missense	S/A	635	Madd	ENSMUST00000066473.11:c.1903T>G	ENSMUSP00000069350.5:p.Ser635Ala	H-2-Kb	8	6	6	SSSSYASL	SSSSYSSL	NetMHC	8.84	24.5	2.771	231	0.143	25.674	58.52	2.279	24.5	8.84	55.7	24.2	61.33946729	27.14813499	66.94836882	28.16696149	M7	0.157142857	0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.143	231	66	13	0.196969697	2qE1	chr2-90451764-94430128	7	5	2	0.9	4.102505121	NA	1	0.65184248	sgMsh2	cell line
chr2	88402653	88402653	CT	C	ENSMUST00000213157.1	5	ENSMUSG00000075127	FS	S/X	94	Olfr1179	ENSMUST00000213157.1:c.280del	ENSMUSP00000151174.1:p.Ser94AlafsTer22	H-2-Kb	8	7	5	ISYTAAWL	ISYTSCMA	NetMHC	9	378.66	42.073	211	0.152	12.197	394.013	32.305	378.66	9	387.4	15	400.6268017	11.60753495	401.5503419	12.78615603	M7	0.528571429	0.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.163	211	0	0	NA	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.743009261	sgMsh2	cell line
chr2	87746294	87746294	A	G	ENSMUST00000214723.1	5	ENSMUSG00000068817	missense	I/V	33	Olfr1140	ENSMUST00000214723.1:c.97A>G	ENSMUSP00000149706.1:p.Ile33Val	H-2-Kb	8	7	5	ISFLVIYL	ISFLIIYL	NetMHC	10.32	14.6	1.415	261	0.126	11.64	22.166	1.904	14.6	10.32	24.3	25.9	25.86663888	11.2911974	20.03272365	11.98781411	M7	2.428571429	2.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.135	261	0	0	NA	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.615375768	sgMsh2	cell line
chr2	91606329	91606329	G	T	ENSMUST00000111338.9	1	ENSMUSG00000040549	missense	Q/H	1591	Ckap5	ENSMUST00000111338.9:c.4773G>T	ENSMUSP00000106970.3:p.Gln1591His	H-2-Kb	8	7	5	ATFMHLRL	ATFMQLRL	NetMHCpan	9.6	49.4	5.146	258	0.151	20.833	103.303	4.959	131.56	16.62	49.4	9.6	99.0238939	28.29697428	107.5820957	25.04609364	M7	0.557142857	0.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.16	258	168	26	0.154761905	2qE1	chr2-90451764-94430128	7	5	2	0.9	4.102505121	NA	1	0.729334244	sgMsh2	cell line
chr2	91606329	91606329	G	T	ENSMUST00000111338.9	1	ENSMUSG00000040549	missense	Q/H	1591	Ckap5	ENSMUST00000111338.9:c.4773G>T	ENSMUSP00000106970.3:p.Gln1591His	H-2-Kb	8	5	7	LIATFMHL	LIATFMQL	NetMHC	24.58	57.14	2.325	258	0.151	54.236	83.255	1.535	57.14	24.58	66.8	33.7	99.71029474	74.77217263	110.5961477	86.24620612	M7	1.557142857	1.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.16	258	168	26	0.154761905	2qE1	chr2-90451764-94430128	7	5	2	0.9	4.102505121	NA	1	0.729334244	sgMsh2	cell line
chr2	87949574	87949574	A	G	ENSMUST00000216191.1	5	ENSMUSG00000075144	missense	F/L	220	Olfr1156	ENSMUST00000216191.1:c.658T>C	ENSMUSP00000151183.1:p.Phe220Leu	H-2-Kb	8	4	8	IIFTSYLL	IIFTSYLF	NetMHCpan	20.1	128.8	6.408	251	0.159	37.503	435.354	11.608	284.92	37.79	128.8	20.1	604.9785825	37.21688324	585.787365	46.6380088	M7	1.728571429	1.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.159	251	0	0	NA	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.724775905	sgMsh2	cell line
chr2	89112332	89112332	A	G	ENSMUST00000217635.1	5	ENSMUSG00000075102	missense	F/S	60	Olfr1221	ENSMUST00000217635.1:c.179T>C	ENSMUSP00000149330.1:p.Phe60Ser	H-2-Kb	8	11	1	SFLVFLSL	FFLVFLSL	SMM	27.399	49.63	1.811	395	0.116	36.332	140.561	3.869	223.08	39.11	800.4	69.8	49.62951144	27.39933359	58.04168341	33.55366776	M7	2.914285714	2.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.114	395	0	0	NA	2qE1	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.519650649	sgMsh2	cell line
chr2	94362443	94362443	T	C	ENSMUST00000111238.7	5	ENSMUSG00000027194	missense	Q/R	654	Ttc17	ENSMUST00000111238.7:c.1961A>G	ENSMUSP00000106869.1:p.Gln654Arg	H-2-Kb	8	8	4	VQYRDIPL	VQYQDIPL	NetMHC	50.99	98.61	1.934	122	0.09	55.622	83.245	1.497	98.61	50.99	294	132.5	66.18201718	55.94225905	67.8797134	55.30189331	M7	-0.871428571	-0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.095	122	57	1	0.01754386	2qE1	chr2-90451764-94430128	7	5	2	0.9	4.102505121	NA	1	0.433042207	sgMsh2	cell line
chr2	91720390	91720390	C	T	ENSMUST00000090608.5	1	ENSMUSG00000027243	missense	T/I	236	Harbi1	ENSMUST00000090608.5:c.707C>T	ENSMUSP00000088098.5:p.Thr236Ile	H-2-Kb	8	6	6	RSWLLIPL	RSWLLTPL	SMMPMBEC	60.777	52.935	0.871	274	0.175	69.458	52.367	0.754	28.24	65.34	51.8	103.4	66.64076901	73.57664827	52.93464441	60.77710368	M7	1.8	1.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.172	274	40	10	0.25	2qE1	chr2-90451764-94430128	7	5	2	0.9	4.102505121	NA	1	0.784034312	sgMsh2	cell line
chr2	89193725	89193725	A	G	ENSMUST00000216445.1	5	ENSMUSG00000075097	missense	V/A	103	Olfr1226	ENSMUST00000216445.1:c.308T>C	ENSMUSP00000150215.1:p.Val103Ala	H-2-Kb	8	10	2	AAHFFTGM	AVHFFTGM	NetMHCpan	21.6	24.4	1.13	531	0.156	202.001	204.404	1.012	108.38	79.11	24.4	21.6	365.3759857	359.5340277	300.4277187	324.8927349	M7	0.714285714	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.162	531	0	0	NA	2qE1	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.738450922	sgMsh2	cell line
chr2	89112332	89112332	A	G	ENSMUST00000217635.1	5	ENSMUSG00000075102	missense	F/S	60	Olfr1221	ENSMUST00000217635.1:c.179T>C	ENSMUSP00000149330.1:p.Phe60Ser	H-2-Kb	8	6	6	GSPMYSFL	GSPMYFFL	NetMHC	84.6	125.97	1.489	395	0.116	108.775	120.491	1.108	125.97	84.6	88.1	100.4	167.0090478	167.3940435	115.0111643	117.1493815	M7	0.571428571	0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.114	395	0	0	NA	2qE1	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.519650649	sgMsh2	cell line
chr2	88423567	88423567	G	T	ENSMUST00000213190.1	5	ENSMUSG00000075125	missense	H/N	153	Olfr1181	ENSMUST00000213190.1:c.457C>A	ENSMUSP00000150939.1:p.His153Asn	H-2-Kb	8	9	3	VANSFPQV	VAHSFPQV	NetMHC	106.43	30.02	0.282	291	0.141	136.536	77.757	0.569	30.02	106.43	52.3	223.2	107.830098	129.9391436	103.2143305	143.1330745	M7	-0.085714286	-0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.135	291	0	0	NA	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.615375768	sgMsh2	cell line
chr2	89112330	89112330	A	G	ENSMUST00000217635.1	5	ENSMUSG00000075102	missense	F/L	61	Olfr1221	ENSMUST00000217635.1:c.181T>C	ENSMUSP00000149330.1:p.Phe61Leu	H-2-Kb	8	5	7	GSPMYFLL	GSPMYFFL	NetMHCpan	74.2	88.1	1.187	402	0.174	138.779	120.491	0.868	125.97	112.84	88.1	74.2	167.0090478	251.6170116	115.0111643	164.7175978	M7	1.228571429	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.166	402	0	0	NA	2qE1	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.756684278	sgMsh2	cell line
chr2	89193935	89193935	T	C	ENSMUST00000216445.1	5	ENSMUSG00000075097	missense	Y/C	33	Olfr1226	ENSMUST00000216445.1:c.98A>G	ENSMUSP00000150215.1:p.Tyr33Cys	H-2-Kb	8	5	7	VIFLLICL	VIFLLIYL	SMM	40.996	13.451	0.328	251	0.024	78.229	16.813	0.215	18.36	114.12	74.7	310.8	13.45054866	40.99585987	15.26651821	42.33894187	M7	3.671428571	3.728571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.026	251	0	0	NA	2qE1	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.118516815	sgMsh2	cell line
chr2	87949574	87949574	A	G	ENSMUST00000216191.1	5	ENSMUSG00000075144	missense	F/L	220	Olfr1156	ENSMUST00000216191.1:c.658T>C	ENSMUSP00000151183.1:p.Phe220Leu	H-2-Kb	8	7	5	TSYLLILI	TSYLFILI	NetMHC	115.99	6.61	0.057	251	0.159	177.713	15.522	0.087	6.61	115.99	12.9	161.9	19.94068165	210.2519343	18.14429089	193.5263029	M7	2.614285714	2.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.159	251	0	0	NA	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.724775905	sgMsh2	cell line
chr2	87746294	87746294	A	G	ENSMUST00000214723.1	5	ENSMUSG00000068817	missense	I/V	33	Olfr1140	ENSMUST00000214723.1:c.97A>G	ENSMUSP00000149706.1:p.Ile33Val	H-2-Kb	8	11	1	VIYLIILV	IIYLIILV	NetMHC	135.04	157.17	1.164	261	0.126	188.94	193.038	1.022	157.17	135.04	748.7	686.6	205.466016	192.6371303	180.6092545	185.2422298	M7	3.428571429	3.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.135	261	0	0	NA	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.615375768	sgMsh2	cell line
chr2	87544785	87544785	C	T	ENSMUST00000102624.1	NA	ENSMUSG00000075156	missense	G/E	253	Olfr1128	ENSMUST00000102624.1:c.758G>A	ENSMUSP00000099684.1:p.Gly253Glu	H-2-Kb	8	6	6	VAIFHETL	VAIFHGTL	NetMHCpan	60.6	26.9	0.444	293	0.119	171.554	67.182	0.392	53.13	150.47	26.9	60.6	81.23440428	192.6371303	99.0238939	246.456343	M7	0.785714286	0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.118	293	0	0	NA	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.537884005	sgMsh2	cell line
chr2	87252877	87252877	A	AG	ENSMUST00000213513.1	5	ENSMUSG00000070856	FS	-/X	313-314	Olfr1115	ENSMUST00000213513.1:c.943dup	ENSMUSP00000150221.1:p.Ala315GlyfsTer16	H-2-Kb	8	17	0	IIYQIVSI	NA	NetMHCpan	77.2	NA	NA	226	0.093	172.093	NA	NA	NA	157.23	NA	77.2	NA	258.6663888	NA	186.956255	M7	1.728571429	1.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.106	226	0	0	NA	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.483183936	sgMsh2	cell line
chr2	87212904	87212904	A	T	ENSMUST00000215611.1	5	ENSMUSG00000070857	missense	K/I	4	Olfr1113	ENSMUST00000215611.1:c.11A>T	ENSMUSP00000150991.1:p.Lys4Ile	H-2-Kb	8	1	4	MQSIYVNL	MQSKYVNL	NetMHCpan	125	156.4	1.251	293	0.143	166.743	189.039	1.134	185.44	177.98	156.4	125	192.6371303	156.5813381	207.8452003	176.9049561	M7	0.485714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.156	293	0	0	NA	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.711100888	sgMsh2	cell line
chr2	88070610	88070610	T	C	ENSMUST00000215268.1	5	ENSMUSG00000075137	missense	I/M	257	Olfr1163	ENSMUST00000215268.1:c.771A>G	ENSMUSP00000149399.1:p.Ile257Met	H-2-Kb	8	4	8	ITIFHGTM	ITIFHGTI	NetMHCpan	54.6	90.7	1.661	334	0.156	222.92	357.12	1.602	513.54	221.07	90.7	54.6	363.6972355	224.7708563	350.5419514	239.1883374	M7	0.6	0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.153	334	0	0	NA	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.697425871	sgMsh2	cell line
chr2	88831221	88831221	G	A	ENSMUST00000215929.1	3	ENSMUSG00000057447	missense	G/R	35	Olfr1205	ENSMUST00000215929.1:c.103G>A	ENSMUSP00000150206.1:p.Gly35Arg	H-2-Kb	8	7	5	VFYMRTVV	VFYMGTVV	NetMHC	293.71	1002.56	3.413	384	0.135	397.581	650.115	1.635	1002.56	293.71	759.8	379.5	540.4306853	424.3654321	468.5328006	415.6616909	M7	0.942857143	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.139	384	0	0	NA	2qE1	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.633609124	sgMsh2	cell line
chr2	89609883	89609883	G	T	ENSMUST00000111532.3	5	ENSMUSG00000075081	missense	T/N	73	Olfr1247	ENSMUST00000111532.3:c.218C>A	ENSMUSP00000107157.1:p.Thr73Asn	H-2-Kb	8	7	5	AVYSNAIL	AVYSTAIL	NetMHCpan	181	103.3	0.571	529	0.146	222.81	159.389	0.715	111.41	306.87	103.3	181	218.1423563	229.4774419	207.3671696	216.1424152	M7	1.242857143	1.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.146	529	0	0	NA	2qE1	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.665517497	sgMsh2	cell line
chr2	89097028	89097028	AT	A	ENSMUST00000213288.1	5	ENSMUSG00000101480	FS	M/X	300	Olfr1220	ENSMUST00000213288.1:c.898del	ENSMUSP00000150812.1:p.Met300CysfsTer18	H-2-Kb	8	20	0	ITIKILYL	NA	NetMHCpan	103.1	NA	NA	235	0.119	298.674	NA	NA	NA	320.82	NA	103.1	NA	359.5340277	NA	276.528565	M7	1.528571429	1.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.123	235	0	0	NA	2qE1	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.5606757	sgMsh2	cell line
chr2	87418564	87418564	CA	C	ENSMUST00000054974.1	NA	ENSMUSG00000043274	FS	Q/X	172	Olfr1123	ENSMUST00000054974.1:c.517del	ENSMUSP00000058786.1:p.Thr173HisfsTer35	H-2-Kb	8	16	0	SLCLFVAL	NA	SMMPMBEC	74.087	NA	NA	354	0.144	189.772	NA	NA	NA	350.34	NA	292.7	NA	86.84403626	NA	74.08665723	M7	3.242857143	3.242857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.142	354	0	0	NA	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.647284141	sgMsh2	cell line
chr2	87309299	87309299	G	A	ENSMUST00000121296.3	NA	ENSMUSG00000083706	missense	C/Y	170	Olfr1118	ENSMUST00000121296.3:c.509G>A	ENSMUSP00000144143.2:p.Cys170Tyr	H-2-Kb	8	9	3	FFYDIPPL	FFCDIPPL	SMM	236.995	2790.873	11.776	568	0.167	301.38	3232.486	10.726	6586.44	361.02	3674.1	341.7	2790.872523	236.9954455	2598.603386	261.0597994	M7	0.442857143	0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.166	568	0	0	NA	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.756684278	sgMsh2	cell line
chr2	111489844	111489844	G	T	ENSMUST00000217611.1	3	ENSMUSG00000095809	missense	H/N	105	Olfr1290	ENSMUST00000217611.1:c.313C>A	ENSMUSP00000150388.1:p.His105Asn	H-2-Kb	8	4	8	MSQVFFAN	MSQVFFAH	SMM	154.433	1605.98	10.399	420	0.014	305.41	906.882	2.969	664.29	385.53	1096.4	873.4	1605.97951	154.4329616	717.3646964	225.2890066	M7	0.542857143	1.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.018	420	0	0	NA	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.082050102	sgMsh2	cell line
chr2	111369267	111369267	A	G	ENSMUST00000216637.1	5	ENSMUSG00000109322	missense	I/V	212	Olfr1283	ENSMUST00000216637.1:c.634A>G	ENSMUSP00000150510.1:p.Ile212Val	H-2-Kb	8	6	6	ATTCFVLL	ATTCFILL	SMM	198.034	216.142	1.091	481	0.021	232.777	287.08	1.233	438.21	387.75	313.7	241.3	216.1424152	198.0341096	260.4593785	224.2538976	M7	2.242857143	2.242857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.024	481	0	0	NA	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.109400137	sgMsh2	cell line
chr2	110265593	110265593	T	A	ENSMUST00000046233.8	1	ENSMUSG00000041660	missense	N/I	342	Bbox1	ENSMUST00000046233.8:c.1025A>T	ENSMUSP00000046302.2:p.Asn342Ile	H-2-Kb	8	7	5	ITFDIWRL	ITFDNWRL	NetMHCpan	54.2	79.3	1.463	133	0.218	96.512	87.498	0.907	262.12	458.63	79.3	54.2	90.51905263	105.3755853	84.47729517	87.64759423	M7	0.214285714	0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.218	133	0	0	NA	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.993717907	sgMsh2	cell line
chr2	111489844	111489844	G	T	ENSMUST00000217611.1	3	ENSMUSG00000095809	missense	H/N	105	Olfr1290	ENSMUST00000217611.1:c.313C>A	ENSMUSP00000150388.1:p.His105Asn	H-2-Kb	8	5	7	SQVFFANC	SQVFFAHC	SMM	222.198	405.266	1.824	420	0.014	331.032	482.239	1.457	904.09	495.78	525.2	388.7	405.2658414	222.1979255	439.2785529	273.3631687	M7	1.014285714	1.014285714	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.018	420	0	0	NA	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.082050102	sgMsh2	cell line
chr2	89112330	89112330	A	G	ENSMUST00000217635.1	5	ENSMUSG00000075102	missense	F/L	61	Olfr1221	ENSMUST00000217635.1:c.181T>C	ENSMUSP00000149330.1:p.Phe61Leu	H-2-Kb	8	10	2	FLLVFLSL	FFLVFLSL	SMMPMBEC	129.342	58.042	0.449	402	0.174	335.362	140.561	0.419	223.08	524.93	800.4	653.9	49.62951144	145.794117	58.04168341	129.3421274	M7	3.057142857	3.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.166	402	0	0	NA	2qE1	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.756684278	sgMsh2	cell line
chr2	88070610	88070610	T	C	ENSMUST00000215268.1	5	ENSMUSG00000075137	missense	I/M	257	Olfr1163	ENSMUST00000215268.1:c.771A>G	ENSMUSP00000149399.1:p.Ile257Met	H-2-Kb	8	5	7	TIFHGTML	TIFHGTIL	SMMPMBEC	234.823	688.24	2.931	334	0.156	278.821	751.228	2.694	1955.18	540.11	524	244.5	814.2166892	313.1410475	688.2401428	234.8226582	M7	1.242857143	1.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.153	334	0	0	NA	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.697425871	sgMsh2	cell line
chr2	89112330	89112330	A	G	ENSMUST00000217635.1	5	ENSMUSG00000075102	missense	F/L	61	Olfr1221	ENSMUST00000217635.1:c.181T>C	ENSMUSP00000149330.1:p.Phe61Leu	H-2-Kb	8	8	4	MYFLLVFL	MYFFLVFL	SMM	163.584	183.544	1.122	402	0.174	438.111	328.176	0.749	702.49	706.5	452.3	748.7	183.5439188	163.5836898	204.0515979	169.7227266	M7	2.842857143	2.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.166	402	0	0	NA	2qE1	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.756684278	sgMsh2	cell line
chr2	111449611	111449611	T	C	ENSMUST00000075390.1	NA	ENSMUSG00000095586	missense	M/T	157	Olfr1287	ENSMUST00000075390.1:c.470T>C	ENSMUSP00000074850.1:p.Met157Thr	H-2-Kb	8	5	7	IGFIHATS	IGFIHAMS	SMM	100.401	88.459	0.881	641	0.232	214.062	182.421	0.852	651.86	981.33	235.5	283	88.45858744	100.4014535	129.3421274	145.1242539	M7	0.571428571	1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.234	641	0	0	NA	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr2	88929956	88929956	C	T	ENSMUST00000215205.1	5	ENSMUSG00000075112	missense	D/N	120	Olfr1211	ENSMUST00000215205.1:c.358G>A	ENSMUSP00000150571.1:p.Asp120Asn	H-2-Kb	9	8	4	MAYNRYVAI	MAYDRYVAI	NetMHCpan	10.6	14.4	1.358	372	0.156	22.873	30.259	1.323	27.08	15.46	14.4	10.6	39.27443988	37.76678362	33.43874735	30.28656361	M7	-0.014285714	-0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.16	372	0	0	NA	2qE1	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.729334244	sgMsh2	cell line
chr2	111489844	111489844	G	T	ENSMUST00000217611.1	3	ENSMUSG00000095809	missense	H/N	105	Olfr1290	ENSMUST00000217611.1:c.313C>A	ENSMUSP00000150388.1:p.His105Asn	H-2-Kb	9	4	8	MSQVFFANC	MSQVFFAHC	NetMHC	22.08	34.94	1.582	420	0.014	329.386	311.461	0.946	34.94	22.08	122.6	90.9	565.0800826	631.1171763	500.3224609	567.8714044	M7	1.014285714	1.314285714	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.018	420	0	0	NA	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.082050102	sgMsh2	cell line
chr2	87418564	87418564	CA	C	ENSMUST00000054974.1	NA	ENSMUSG00000043274	FS	Q/X	172	Olfr1123	ENSMUST00000054974.1:c.517del	ENSMUSP00000058786.1:p.Thr173HisfsTer35	H-2-Kb	9	32	0	ISHQYSNLL	NA	NetMHC	24.78	NA	NA	354	0.144	68.39	NA	NA	NA	24.78	NA	37.9	NA	98.88035114	NA	125.9650316	M7	-0.671428571	-0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.142	354	0	0	NA	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.647284141	sgMsh2	cell line
chr2	111537918	111537918	C	G	ENSMUST00000208675.2	2	ENSMUSG00000109547	missense	V/L	124	Olfr1294	ENSMUST00000208675.2:c.370G>C	ENSMUSP00000146438.1:p.Val124Leu	H-2-Kb	9	5	7	MAYDRYLAI	MAYDRYVAI	NetMHCpan	14.8	14.4	0.973	336	0.196	34.154	30.259	0.886	27.08	30.53	14.4	14.8	39.27443988	39.82080176	33.43874735	37.77896015	M7	-0.071428571	-0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.191	336	0	0	NA	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.870642753	sgMsh2	cell line
chr2	89112332	89112332	A	G	ENSMUST00000217635.1	5	ENSMUSG00000075102	missense	F/S	60	Olfr1221	ENSMUST00000217635.1:c.179T>C	ENSMUSP00000149330.1:p.Phe60Ser	H-2-Kb	9	11	1	SFLVFLSLL	FFLVFLSLL	NetMHC	33.6	120.88	3.598	395	0.116	86.997	149.201	1.715	120.88	33.6	1133	105.9	104.9808295	68.09418088	177.521108	120.5729815	M7	3.057142857	3.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.114	395	0	0	NA	2qE1	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.519650649	sgMsh2	cell line
chr2	111537918	111537918	C	G	ENSMUST00000208675.2	2	ENSMUSG00000109547	missense	V/L	124	Olfr1294	ENSMUST00000208675.2:c.370G>C	ENSMUSP00000146438.1:p.Val124Leu	H-2-Kb	9	3	9	VAMAYDRYL	VAMAYDRYV	NetMHC	34.74	105.62	3.04	336	0.196	119.516	324.279	2.713	105.62	34.74	254	63.6	394.5572246	175.4324789	422.9119919	188.9078477	M7	-0.442857143	0.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.191	336	0	0	NA	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.870642753	sgMsh2	cell line
chr2	87418564	87418564	CA	C	ENSMUST00000054974.1	NA	ENSMUSG00000043274	FS	Q/X	172	Olfr1123	ENSMUST00000054974.1:c.517del	ENSMUSP00000058786.1:p.Thr173HisfsTer35	H-2-Kb	9	31	0	VISHQYSNL	NA	NetMHC	46.03	NA	NA	354	0.144	153.473	NA	NA	NA	46.03	NA	113.7	NA	193.2457716	NA	213.4273146	M7	-1.328571429	-0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.142	354	0	0	NA	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.647284141	sgMsh2	cell line
chr2	89193725	89193725	A	G	ENSMUST00000216445.1	5	ENSMUSG00000075097	missense	V/A	103	Olfr1226	ENSMUST00000216445.1:c.308T>C	ENSMUSP00000150215.1:p.Val103Ala	H-2-Kb	9	9	3	FAAHFFTGM	FAVHFFTGM	NetMHCpan	36.5	28.8	0.789	531	0.156	93.488	72.967	0.78	31.09	59.3	28.8	36.5	114.8444468	127.6762152	134.3538141	173.0812408	M7	0.714285714	1.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.162	531	0	0	NA	2qE1	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.738450922	sgMsh2	cell line
chr2	89112332	89112332	A	G	ENSMUST00000217635.1	5	ENSMUSG00000075102	missense	F/S	60	Olfr1221	ENSMUST00000217635.1:c.179T>C	ENSMUSP00000149330.1:p.Phe60Ser	H-2-Kb	9	10	2	YSFLVFLSL	YFFLVFLSL	NetMHCpan	60.7	1055.3	17.386	395	0.116	104.309	382.366	3.666	470.12	63.37	1055.3	60.7	268.6024688	145.2479461	294.6117067	146.6391721	M7	2.914285714	2.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.114	395	0	0	NA	2qE1	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.519650649	sgMsh2	cell line
chr2	110265593	110265593	T	A	ENSMUST00000046233.8	1	ENSMUSG00000041660	missense	N/I	342	Bbox1	ENSMUST00000046233.8:c.1025A>T	ENSMUSP00000046302.2:p.Asn342Ile	H-2-Kb	9	7	5	ITFDIWRLL	ITFDNWRLL	NetMHCpan	45.4	49.9	1.099	133	0.218	134.553	91.818	0.682	47.54	89.53	49.9	45.4	138.3916859	195.4834522	133.7365144	179.5767056	M7	0.857142857	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.218	133	0	0	NA	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.993717907	sgMsh2	cell line
chr2	87949574	87949574	A	G	ENSMUST00000216191.1	5	ENSMUSG00000075144	missense	F/L	220	Olfr1156	ENSMUST00000216191.1:c.658T>C	ENSMUSP00000151183.1:p.Phe220Leu	H-2-Kb	9	4	8	IIFTSYLLI	IIFTSYLFI	NetMHCpan	39.3	53.8	1.369	251	0.159	102.779	167.887	1.633	164.28	102.46	53.8	39.3	203.287184	110.9455787	171.4944225	103.0979429	M7	1.728571429	1.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.159	251	0	0	NA	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.724775905	sgMsh2	cell line
chr2	91606329	91606329	G	T	ENSMUST00000111338.9	1	ENSMUSG00000040549	missense	Q/H	1591	Ckap5	ENSMUST00000111338.9:c.4773G>T	ENSMUSP00000106970.3:p.Gln1591His	H-2-Kb	9	7	5	ATFMHLRLI	ATFMQLRLI	NetMHCpan	83	452.8	5.455	258	0.151	187.728	640.476	3.412	370.21	103.03	452.8	83	828.1518951	283.863792	897.9455448	272.4269072	M7	1.3	1.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.16	258	168	26	0.154761905	2qE1	chr2-90451764-94430128	7	5	2	0.9	4.102505121	NA	1	0.729334244	sgMsh2	cell line
chr2	89193725	89193725	A	G	ENSMUST00000216445.1	5	ENSMUSG00000075097	missense	V/A	103	Olfr1226	ENSMUST00000216445.1:c.308T>C	ENSMUSP00000150215.1:p.Val103Ala	H-2-Kb	9	5	7	MTQLFAAHF	MTQLFAVHF	NetMHC	124.5	556.39	4.469	531	0.156	451.112	924.262	2.049	556.39	124.5	815.5	185.9	1033.023021	716.3248211	1294.941055	955.5424822	M7	0.9	1.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.162	531	0	0	NA	2qE1	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.738450922	sgMsh2	cell line
chr2	88402653	88402653	CT	C	ENSMUST00000213157.1	5	ENSMUSG00000075127	FS	S/X	94	Olfr1179	ENSMUST00000213157.1:c.280del	ENSMUSP00000151174.1:p.Ser94AlafsTer22	H-2-Kb	9	14	0	LSFLPCISL	NA	NetMHC	146.85	NA	NA	211	0.152	216.149	NA	NA	NA	146.85	NA	174.6	NA	257.6973782	NA	291.9106903	M7	2.142857143	2.142857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.163	211	0	0	NA	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.743009261	sgMsh2	cell line
chr2	88831221	88831221	G	A	ENSMUST00000215929.1	3	ENSMUSG00000057447	missense	G/R	35	Olfr1205	ENSMUST00000215929.1:c.103G>A	ENSMUSP00000150206.1:p.Gly35Arg	H-2-Kb	9	4	8	IFLVFYMRT	IFLVFYMGT	SMM	120.534	150.699	1.25	384	0.135	141.147	167.653	1.188	146.16	151.3	1222.2	821.2	150.6988715	120.5341196	184.6077801	130.9935766	M7	0.885714286	2.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.139	384	0	0	NA	2qE1	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.633609124	sgMsh2	cell line
chr2	87544785	87544785	C	T	ENSMUST00000102624.1	NA	ENSMUSG00000075156	missense	G/E	253	Olfr1128	ENSMUST00000102624.1:c.758G>A	ENSMUSP00000099684.1:p.Gly253Glu	H-2-Kb	9	6	6	VAIFHETLF	VAIFHGTLF	SMM	107.179	238.292	2.223	293	0.119	137.075	240.071	1.751	241.85	156.05	323.1	366.8	238.292295	107.1790739	225.553723	118.1000278	M7	0.928571429	0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.118	293	0	0	NA	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.537884005	sgMsh2	cell line
chr2	91284247	91284247	A	G	ENSMUST00000102594.10	1	ENSMUSG00000040591	missense	F/L	147	1110051M20Rik	ENSMUST00000102594.10:c.439T>C	ENSMUSP00000099654.4:p.Phe147Leu	H-2-Kb	9	8	4	QIQLYYSEF	QIQFYYSEF	SMM	177.873	191.034	1.074	234	0.201	233.567	248.13	1.062	224.46	181.21	352.1	442.3	191.0337056	177.8729877	271.8003427	285.9235978	M7	-0.542857143	-0.3	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.195	234	44	6	0.136363636	2qE1	chr2-90451764-94430128	7	5	2	0.9	4.102505121	NA	2	0.88887611	sgMsh2	cell line
chr2	87418564	87418564	CA	C	ENSMUST00000054974.1	NA	ENSMUSG00000043274	FS	Q/X	172	Olfr1123	ENSMUST00000054974.1:c.517del	ENSMUSP00000058786.1:p.Thr173HisfsTer35	H-2-Kb	9	15	0	FSLCLFVAL	NA	SMMPMBEC	192.42	NA	NA	354	0.144	206.906	NA	NA	NA	193.97	NA	286.4	NA	219.8416627	NA	192.4199068	M7	3.242857143	3.242857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.142	354	0	0	NA	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.647284141	sgMsh2	cell line
chr2	88070610	88070610	T	C	ENSMUST00000215268.1	5	ENSMUSG00000075137	missense	I/M	257	Olfr1163	ENSMUST00000215268.1:c.771A>G	ENSMUSP00000149399.1:p.Ile257Met	H-2-Kb	9	4	8	ITIFHGTML	ITIFHGTIL	NetMHCpan	99.3	211.2	2.127	334	0.156	218.84	396.307	1.811	552.76	196.55	211.2	99.3	448.8590645	348.4255546	343.7557727	241.1293081	M7	1.242857143	1.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.153	334	0	0	NA	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.697425871	sgMsh2	cell line
chr2	86923173	86923173	A	G	ENSMUST00000111574.2	3	ENSMUSG00000075169	missense	Y/H	120	Olfr1098	ENSMUST00000111574.2:c.358T>C	ENSMUSP00000107200.1:p.Tyr120His	H-2-Kb	9	9	3	MAHDRYVAI	MAYDRYVAI	SMMPMBEC	181.656	33.439	0.184	439	0.173	201.4	30.259	0.15	27.08	200.2	14.4	202.6	39.27443988	223.4138023	33.43874735	181.6561058	M7	-0.285714286	-0.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.179	439	0	0	NA	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.815942685	sgMsh2	cell line
chr2	91284247	91284247	A	G	ENSMUST00000102594.10	1	ENSMUSG00000040591	missense	F/L	147	1110051M20Rik	ENSMUST00000102594.10:c.439T>C	ENSMUSP00000099654.4:p.Phe147Leu	H-2-Kb	9	9	3	IQLYYSEFL	IQFYYSEFL	NetMHCpan	192.4	29.6	0.154	234	0.201	382.31	125.453	0.328	51.33	204.72	29.6	192.4	199.5767748	559.8993973	219.4067579	608.4851727	M7	0.5	0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.195	234	44	6	0.136363636	2qE1	chr2-90451764-94430128	7	5	2	0.9	4.102505121	NA	2	0.88887611	sgMsh2	cell line
chr2	87418564	87418564	CA	C	ENSMUST00000054974.1	NA	ENSMUSG00000043274	FS	Q/X	172	Olfr1123	ENSMUST00000054974.1:c.517del	ENSMUSP00000058786.1:p.Thr173HisfsTer35	H-2-Kb	9	37	0	SNLLVVTHL	NA	NetMHCpan	181.8	NA	NA	354	0.144	482.157	NA	NA	NA	214.23	NA	181.8	NA	750.0841699	NA	755.5270188	M7	2.271428571	2.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.142	354	0	0	NA	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.647284141	sgMsh2	cell line
chr2	89112332	89112332	A	G	ENSMUST00000217635.1	5	ENSMUSG00000075102	missense	F/S	60	Olfr1221	ENSMUST00000217635.1:c.179T>C	ENSMUSP00000149330.1:p.Phe60Ser	H-2-Kb	9	8	4	PMYSFLVFL	PMYFFLVFL	SMM	29.384	32.219	1.096	395	0.116	135.439	202.29	1.494	360.5	217.39	910.3	281.5	32.21884741	29.38393807	44.08085403	53.4872168	M7	2.185714286	2.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.114	395	0	0	NA	2qE1	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.519650649	sgMsh2	cell line
chr2	88896799	88896799	T	C	ENSMUST00000214297.1	5	ENSMUSG00000075114	missense	K/R	266	Olfr1208	ENSMUST00000214297.1:c.797A>G	ENSMUSP00000149695.1:p.Lys266Arg	H-2-Kb	9	11	1	RVFALFYTM	KVFALFYTM	NetMHCpan	58.6	48.3	0.824	403	0.161	255.728	205.981	0.805	183.87	220.98	48.3	58.6	228.091972	290.4758291	294.6117067	366.6485738	M7	1.585714286	1.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.159	403	0	0	NA	2qE1	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.724775905	sgMsh2	cell line
chr2	89112330	89112330	A	G	ENSMUST00000217635.1	5	ENSMUSG00000075102	missense	F/L	61	Olfr1221	ENSMUST00000217635.1:c.181T>C	ENSMUSP00000149330.1:p.Phe61Leu	H-2-Kb	9	10	2	FLLVFLSLL	FFLVFLSLL	NetMHC	229.34	120.88	0.527	402	0.174	325.814	149.201	0.458	120.88	229.34	1133	1179.6	104.9808295	272.9669078	177.521108	378.6604965	M7	3.057142857	3.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.166	402	0	0	NA	2qE1	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.756684278	sgMsh2	cell line
chr2	89112330	89112330	A	G	ENSMUST00000217635.1	5	ENSMUSG00000075102	missense	F/L	61	Olfr1221	ENSMUST00000217635.1:c.181T>C	ENSMUSP00000149330.1:p.Phe61Leu	H-2-Kb	9	5	7	GSPMYFLLV	GSPMYFFLV	NetMHCpan	143	135.5	0.948	402	0.174	298.693	265.97	0.89	211.97	244	135.5	143	319.9705442	357.3633412	346.9365057	353.3865369	M7	1.942857143	1.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.166	402	0	0	NA	2qE1	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.756684278	sgMsh2	cell line
chr2	87544785	87544785	C	T	ENSMUST00000102624.1	NA	ENSMUSG00000075156	missense	G/E	253	Olfr1128	ENSMUST00000102624.1:c.758G>A	ENSMUSP00000099684.1:p.Gly253Glu	H-2-Kb	9	5	7	AVAIFHETL	AVAIFHGTL	NetMHCpan	127.7	86.7	0.679	293	0.119	381.216	222.467	0.584	104.33	255.15	86.7	127.7	356.5414284	514.1738673	340.6042008	507.2826396	M7	0.785714286	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.118	293	0	0	NA	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.537884005	sgMsh2	cell line
chr2	91606329	91606329	G	T	ENSMUST00000111338.9	1	ENSMUSG00000040549	missense	Q/H	1591	Ckap5	ENSMUST00000111338.9:c.4773G>T	ENSMUSP00000106970.3:p.Gln1591His	H-2-Kb	9	6	6	IATFMHLRL	IATFMQLRL	NetMHCpan	115.5	368.7	3.192	258	0.151	262.767	458.862	1.746	535.38	267.16	368.7	115.5	460.3731641	298.6138865	457.3513865	258.3747087	M7	0.557142857	1.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.16	258	168	26	0.154761905	2qE1	chr2-90451764-94430128	7	5	2	0.9	4.102505121	NA	1	0.729334244	sgMsh2	cell line
chr2	91284247	91284247	A	G	ENSMUST00000102594.10	1	ENSMUSG00000040591	missense	F/L	147	1110051M20Rik	ENSMUST00000102594.10:c.439T>C	ENSMUSP00000099654.4:p.Phe147Leu	H-2-Kb	9	3	9	FLFAFQIQL	FLFAFQIQF	NetMHCpan	235.9	1129.7	4.789	234	0.201	317.333	742.822	2.341	735.56	268.86	1129.7	235.9	750.0841699	444.7438999	632.7760017	365.8053055	M7	1.242857143	2.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.195	234	44	6	0.136363636	2qE1	chr2-90451764-94430128	7	5	2	0.9	4.102505121	NA	2	0.88887611	sgMsh2	cell line
chr2	87949574	87949574	A	G	ENSMUST00000216191.1	5	ENSMUSG00000075144	missense	F/L	220	Olfr1156	ENSMUST00000216191.1:c.658T>C	ENSMUSP00000151183.1:p.Phe220Leu	H-2-Kb	9	3	9	VIIFTSYLL	VIIFTSYLF	SMM	216.825	365.687	1.687	251	0.159	325.71	576.299	1.769	422.72	286.02	1392	365.4	365.6874028	216.825322	729.8775406	421.9393213	M7	1.728571429	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.159	251	0	0	NA	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.724775905	sgMsh2	cell line
chr2	117177703	117177703	A	G	ENSMUST00000028829.12	1	ENSMUSG00000027351	missense	I/M	363	Spred1	ENSMUST00000028829.12:c.1089A>G	ENSMUSP00000028829.6:p.Ile363Met	H-2-Kb	9	10	2	CMYQVSCML	CIYQVSCML	SMM	228.618	511.811	2.239	184	0.185	331.205	563.356	1.701	483.81	295.31	614.9	367.1	511.811453	228.6177783	851.6281337	411.386466	M7	0.971428571	0.971428571	TRUE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.194	184	168	41	0.244047619	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.884317771	sgMsh2	cell line
chr2	87746294	87746294	A	G	ENSMUST00000214723.1	5	ENSMUSG00000068817	missense	I/V	33	Olfr1140	ENSMUST00000214723.1:c.97A>G	ENSMUSP00000149706.1:p.Ile33Val	H-2-Kb	9	7	5	ISFLVIYLI	ISFLIIYLI	NetMHC	298.21	282.86	0.949	261	0.126	404.398	332.259	0.822	282.86	298.21	420.4	462.2	319.9705442	394.5572246	344.5482116	414.2380608	M7	3.185714286	3.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.135	261	0	0	NA	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.615375768	sgMsh2	cell line
chr2	88959354	88959354	C	T	ENSMUST00000215781.1	5	ENSMUSG00000048226	missense	A/V	296	Olfr1212	ENSMUST00000215781.1:c.887C>T	ENSMUSP00000149781.1:p.Ala296Val	H-2-Kb	9	11	1	VIRKMWNRF	AIRKMWNRF	SMM	157.076	466.778	2.972	202	0.104	259.694	769.516	2.963	1005.39	326.08	2454.1	883.5	466.7775928	157.0760603	533.6419961	193.3080768	M7	-1.8	-0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.115	202	0	0	NA	2qE1	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.524208988	sgMsh2	cell line
chr2	88070610	88070610	T	C	ENSMUST00000215268.1	5	ENSMUSG00000075137	missense	I/M	257	Olfr1163	ENSMUST00000215268.1:c.771A>G	ENSMUSP00000149399.1:p.Ile257Met	H-2-Kb	9	3	9	AITIFHGTM	AITIFHGTI	NetMHCpan	325.5	543	1.668	334	0.156	486.627	930.513	1.912	796.27	349.16	543	325.5	1330.791444	704.8715793	1064.755765	624.0939895	M7	0.6	1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.153	334	0	0	NA	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.697425871	sgMsh2	cell line
chr2	87418564	87418564	CA	C	ENSMUST00000054974.1	NA	ENSMUSG00000043274	FS	Q/X	172	Olfr1123	ENSMUST00000054974.1:c.517del	ENSMUSP00000058786.1:p.Thr173HisfsTer35	H-2-Kb	9	7	6	VVIGQHTRF	VVIGQTYQI	SMM	355.721	1040.184	2.924	354	0.144	366.693	1316.506	3.59	1587.69	376.73	2075.4	782.4	1040.183595	355.7214058	1045.321782	356.6563823	M7	-0.714285714	0.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.142	354	0	0	NA	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.647284141	sgMsh2	cell line
chr2	90149482	90149482	A	G	ENSMUST00000215578.1	5	ENSMUSG00000075065	missense	Y/H	175	Olfr1270	ENSMUST00000215578.1:c.523T>C	ENSMUSP00000151124.1:p.Tyr175His	H-2-Kb	9	7	5	VIDHHFCDL	VIDHYFCDL	SMMPMBEC	216.396	172.286	0.796	335	0.161	328.55	236.774	0.721	255.22	384.76	345.2	850.8	218.3282833	272.3391013	172.2860048	216.3963843	M7	-0.614285714	0.585714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.151	335	0	0	NA	2qE1	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.688309193	sgMsh2	cell line
chr2	90139121	90139121	A	C	ENSMUST00000215153.2	2	ENSMUSG00000075066	missense	V/G	6	Olfr32	ENSMUST00000215153.2:c.17T>G	ENSMUSP00000150246.1:p.Val6Gly	H-2-Kb	9	1	6	MAFVNGTEL	MAFVNVTEL	NetMHCpan	300.4	116.7	0.388	340	0.179	451.798	244.575	0.541	170.65	408.02	116.7	300.4	318.5004131	495.5756965	366.6485738	566.5653364	M7	0.385714286	0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.184	340	0	0	NA	2qE1	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.83873438	sgMsh2	cell line
chr2	101734693	101734693	A	G	ENSMUST00000171088.7	5	ENSMUSG00000032841	missense	V/A	166	Prr5l	ENSMUST00000171088.7:c.497T>C	ENSMUSP00000130152.1:p.Val166Ala	H-2-Kb	9	5	7	LGFRDLALL	LGFRDLVLL	NetMHCpan	292.1	819	2.804	45	0.178	496.619	954.103	1.921	1493.75	410.8	819	292.1	1089.205937	755.2835049	789.3143527	582.4383998	M7	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.197	45	3	1	0.333333333	2qE2	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.897992788	sgMsh2	cell line
chr2	89055070	89055070	A	T	ENSMUST00000215048.1	5	ENSMUSG00000075105	missense	Y/N	119	Olfr1218	ENSMUST00000215048.1:c.355T>A	ENSMUSP00000149171.1:p.Tyr119Asn	H-2-Kb	9	9	3	MANDRYVAI	MAYDRYVAI	SMMPMBEC	298.71	33.439	0.112	333	0.18	406.533	30.259	0.074	27.08	427.49	14.4	608.6	39.27443988	385.5760057	33.43874735	298.7101638	M7	-0.328571429	-0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.179	333	0	0	NA	2qE1	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.815942685	sgMsh2	cell line
chr2	87656102	87656102	A	AT	ENSMUST00000135875.3	5	ENSMUSG00000111747	FS	M/NX	273	Olfr1134	ENSMUST00000135875.3:c.817dup	ENSMUSP00000150837.1:p.Met273AsnfsTer23	H-2-Kb	9	20	0	DSYVKPTYL	NA	SMM	254.748	NA	NA	364	0.17	435.96	NA	NA	NA	486.22	NA	545.4	NA	254.7475407	NA	385.7003207	M7	-0.114285714	-0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.174	364	0	0	NA	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.79315099	sgMsh2	cell line
chr2	88402653	88402653	CT	C	ENSMUST00000213157.1	5	ENSMUSG00000075127	FS	S/X	94	Olfr1179	ENSMUST00000213157.1:c.280del	ENSMUSP00000151174.1:p.Ser94AlafsTer22	H-2-Kb	9	12	0	AWLSFLPCI	NA	SMM	219.842	NA	NA	211	0.152	459.983	NA	NA	NA	571.32	NA	546.5	NA	219.8416627	NA	373.4650797	M7	2.142857143	2.142857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.163	211	0	0	NA	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.743009261	sgMsh2	cell line
chr2	91167871	91167871	A	C	ENSMUST00000066473.11	5	ENSMUSG00000040687	missense	S/A	635	Madd	ENSMUST00000066473.11:c.1903T>G	ENSMUSP00000069350.5:p.Ser635Ala	H-2-Kb	9	8	4	SSYASLGDF	SSYSSLGDF	NetMHCpan	354.9	367.4	1.035	231	0.143	393.577	331.686	0.843	578.23	780.77	367.4	354.9	247.8049629	409.3643322	295.9715726	377.7896015	M7	0.342857143	0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.143	231	66	13	0.196969697	2qE1	chr2-90451764-94430128	7	5	2	0.9	4.102505121	NA	1	0.65184248	sgMsh2	cell line
chr2	158768178	158768178	C	T	ENSMUST00000029183.2	1	ENSMUSG00000027654	missense	P/L	22	Fam83d	ENSMUST00000029183.2:c.65C>T	ENSMUSP00000029183.2:p.Pro22Leu	H-2-Db	9	8	4	CGPLNPTEL	CGPPNPTEL	NetMHC	65.56	425.32	6.487	48	0.229	216.905	644.766	2.973	425.32	65.56	306.4	93.7	864.2114181	340.1104688	1154.968129	410.7428385	M7	-0.471428571	-0.214285714	TRUE	FALSE	FALSE	1	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.239	48	10	2	0.2	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr2	126650133	126650133	A	G	ENSMUST00000110425.8	1	ENSMUSG00000027361	missense	V/A	211	Gabpb1	ENSMUST00000110425.8:c.632T>C	ENSMUSP00000106055.2:p.Val211Ala	H-2-Db	9	10	2	SALATLAAL	SVLATLAAL	NetMHCpan	259.6	3037.8	11.702	117	0.205	445.915	3062.696	6.868	5743.24	422.4	3037.8	259.6	3087.592661	482.636319	2996.194483	469.4290913	M7	2.3	2.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.217	117	76	15	0.197368421	2qF1	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.989159568	sgMsh2	cell line
chr2	130244507	130244507	A	G	ENSMUST00000077988.7	1	ENSMUSG00000060332	missense	R/G	567	Tmc2	ENSMUST00000077988.7:c.1699A>G	ENSMUSP00000077139.1:p.Arg567Gly	H-2-Kb	8	5	7	VGIEFMGL	VGIEFMRL	NetMHC	3.92	3.39	0.865	111	0.18	11.366	7.976	0.702	3.39	3.92	6.9	7.5	9.051905263	15.23140619	10.65957771	18.4391119	M7	1.242857143	1.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.202	111	0	0	NA	2qF1	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.920784483	sgMsh2	cell line
chr2	132240580	132240580	A	G	ENSMUST00000110164.7	2	ENSMUSG00000027341	missense	F/S	90	Tmem230	ENSMUST00000110164.7:c.269T>C	ENSMUSP00000105793.1:p.Phe90Ser	H-2-Kb	8	11	1	SLPGFYHL	FLPGFYHL	NetMHCpan	98.2	522.1	5.317	137	0.226	164.475	459.527	2.794	694.44	114.79	522.1	98.2	387.9180607	214.1608096	396.9538331	229.4774419	M7	0.557142857	0.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.222	137	26	5	0.192307692	2qF2	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr2	164820502	164820502	C	T	ENSMUST00000052107.4	1	ENSMUSG00000045822	missense	L/F	301	Zswim3	ENSMUST00000052107.4:c.901C>T	ENSMUSP00000050970.3:p.Leu301Phe	H-2-Kb	8	7	5	SARTFLSI	SARTLLSI	NetMHCpan	150.2	2729.6	18.173	137	0.248	269.723	3724.819	13.81	3719.37	185.66	2729.6	150.2	3730.267702	353.7854762	4214.44121	395.1299959	M7	0.985714286	0.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.239	137	32	8	0.25	2qH3	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr2	119139420	119139420	GT	G	ENSMUST00000094695.11	1	ENSMUSG00000070730	FS	T/X	387	Rmdn3	ENSMUST00000094695.11:c.1159del	ENSMUSP00000092283.5:p.Thr387ArgfsTer46	H-2-Kb	8	37	0	YSQDFQKL	NA	SMM	227.898	NA	NA	152	0.289	263.57	NA	NA	NA	233.55	NA	302.9	NA	227.8977303	NA	293.5891489	M7	-1.228571429	-1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.281	152	29	1	0.034482759	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr2	121343482	121343482	C	A	ENSMUST00000052029.9	1	ENSMUSG00000033526	missense	G/V	386	Ppip5k1	ENSMUST00000052029.9:c.1157G>T	ENSMUSP00000057632.3:p.Gly386Val	H-2-Kb	8	9	3	TSVTMMEL	TSGTMMEL	NetMHC	281.07	2080.14	7.401	216	0.185	498.949	1674.977	3.357	2080.14	281.07	3652.7	480.6	1269.813676	529.3464441	1116.194813	517.2970479	M7	0.971428571	0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.183	216	20	2	0.1	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.834176041	sgMsh2	cell line
chr2	164025647	164025647	A	G	ENSMUST00000067715.4	1	ENSMUSG00000054582	missense	Y/C	56	Pabpc1l	ENSMUST00000067715.4:c.167A>G	ENSMUSP00000096701.3:p.Tyr56Cys	H-2-Kb	8	5	7	RSLGYACI	RSLGYAYI	SMMPMBEC	239.74	86.445	0.361	74	0.081	315.363	69.973	0.222	31.14	336.46	53.5	359.4	96.54727043	294.2659418	86.44502416	239.7397234	M7	1.442857143	1.442857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.088	74	0	0	NA	2qH3	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.401133834	sgMsh2	cell line
chr2	146449255	146449255	A	G	ENSMUST00000109986.8	5	ENSMUSG00000037110	missense	F/L	254	Ralgapa2	ENSMUST00000109986.8:c.760T>C	ENSMUSP00000105613.2:p.Phe254Leu	H-2-Kb	8	10	2	LLPSFTKL	LFPSFTKL	NetMHCpan	200.2	284.2	1.42	81	0.272	480.285	228.162	0.475	170.26	450.37	284.2	200.2	227.3735801	667.9439184	228.9496585	510.1994663	M7	0.485714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.279	81	174	43	0.247126437	2qG1	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr2	122283210	122283210	A	C	ENSMUST00000053734.5	2	ENSMUSG00000068452	missense	I/S	1202	Duox2	ENSMUST00000053734.5:c.3605T>G	ENSMUSP00000050314.5:p.Ile1202Ser	H-2-Kb	8	5	7	VLYVLISI	VLYVLIII	NetMHCpan	317.2	2173.2	6.851	145	0.214	382.138	1629.877	4.265	2099	476.4	2173.2	317.2	1160.753495	418.5429201	1129.11974	345.7323355	M7	2.671428571	2.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.232	145	0	0	NA	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr2	132240580	132240580	A	G	ENSMUST00000110164.7	2	ENSMUSG00000027341	missense	F/S	90	Tmem230	ENSMUST00000110164.7:c.269T>C	ENSMUSP00000105793.1:p.Phe90Ser	H-2-Kb	9	10	2	VSLPGFYHL	VFLPGFYHL	NetMHC	22.77	187.13	8.218	137	0.226	93.901	246.108	2.621	187.13	22.77	200.4	30	291.8166046	157.8010905	341.3893746	169.9221522	M7	0.557142857	0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.222	137	26	5	0.192307692	2qF2	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr2	126650133	126650133	A	G	ENSMUST00000110425.8	1	ENSMUSG00000027361	missense	V/A	211	Gabpb1	ENSMUST00000110425.8:c.632T>C	ENSMUSP00000106055.2:p.Val211Ala	H-2-Kb	9	10	2	SALATLAAL	SVLATLAAL	NetMHC	81.99	93.77	1.144	117	0.205	308.925	330.95	1.071	93.77	81.99	219.2	224.2	442.7004873	393.6497682	628.4200023	543.5631415	M7	2.3	2.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.217	117	76	15	0.197368421	2qF1	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.989159568	sgMsh2	cell line
chr2	126459694	126459694	A	G	ENSMUST00000040128.11	5	ENSMUSG00000060131	missense	I/T	82	Atp8b4	ENSMUST00000040128.11:c.245T>C	ENSMUSP00000046444.5:p.Ile82Thr	H-2-Kb	9	6	6	TWFTTTVPL	TWFTTIVPL	SMM	134.62	133.386	0.991	171	0.228	173.938	143.61	0.826	148.82	157.22	138.4	194.4	133.3859235	134.6201283	175.4890407	190.6557905	M7	1.014285714	1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	171	0	0	NA	2qF1	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr2	126459694	126459694	A	G	ENSMUST00000040128.11	5	ENSMUSG00000060131	missense	I/T	82	Atp8b4	ENSMUST00000040128.11:c.245T>C	ENSMUSP00000046444.5:p.Ile82Thr	H-2-Kb	9	3	9	SSLTWFTTT	SSLTWFTTI	NetMHC	177.03	22.12	0.125	171	0.228	294.724	95.436	0.324	22.12	177.03	21.6	222.8	186.2558834	433.6206938	168.7524163	366.6485738	M7	0.414285714	0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	171	0	0	NA	2qF1	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr2	119139420	119139420	GT	G	ENSMUST00000094695.11	1	ENSMUSG00000070730	FS	T/X	387	Rmdn3	ENSMUST00000094695.11:c.1159del	ENSMUSP00000092283.5:p.Thr387ArgfsTer46	H-2-Kb	9	45	0	DGYIFLSAI	NA	NetMHC	187.49	NA	NA	152	0.289	309.473	NA	NA	NA	187.49	NA	212.4	NA	406.5462879	NA	510.7989549	M7	2.185714286	2.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.281	152	29	1	0.034482759	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr2	122283210	122283210	A	C	ENSMUST00000053734.5	2	ENSMUSG00000068452	missense	I/S	1202	Duox2	ENSMUST00000053734.5:c.3605T>G	ENSMUSP00000050314.5:p.Ile1202Ser	H-2-Kb	9	11	1	SIHGSYALI	IIHGSYALI	NetMHC	193.02	144.18	0.747	145	0.214	352.928	219.407	0.622	144.18	193.02	191.5	435.5	252.4120012	328.9349344	247.3147393	376.9207095	M7	0.628571429	0.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.232	145	0	0	NA	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr2	121348531	121348531	C	T	ENSMUST00000052029.9	1	ENSMUSG00000033526	missense	S/N	238	Ppip5k1	ENSMUST00000052029.9:c.713G>A	ENSMUSP00000057632.3:p.Ser238Asn	H-2-Kb	9	4	8	SVYSPESNV	SVYSPESSV	SMM	190.594	221.876	1.164	185	0.2	308.084	401.872	1.304	330.32	195.2	875.3	523.6	221.8758325	190.5943402	473.4237051	420.9688878	M7	-1.042857143	-0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.203	185	19	6	0.315789474	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.925342822	sgMsh2	cell line
chr2	158120220	158120220	T	C	ENSMUST00000103122.9	1	ENSMUSG00000037820	missense	I/V	560	Tgm2	ENSMUST00000103122.9:c.1678A>G	ENSMUSP00000099411.3:p.Ile560Val	H-2-Kb	9	8	4	SNLVKVRGL	SNLIKVRGL	NetMHC	221.73	256.46	1.157	42	0.262	313.145	361.082	1.153	256.46	221.73	250.6	241.6	465.7040341	384.6892055	496.8782653	504.9518876	M7	1.028571429	1.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.286	42	97	3	0.030927835	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr2	122123858	122123858	C	T	ENSMUST00000028665.4	1	ENSMUSG00000027233	missense	G/S	411	Patl2	ENSMUST00000028665.4:c.1231G>A	ENSMUSP00000028665.4:p.Gly411Ser	H-2-Kb	9	11	1	SLHMLFKPL	GLHMLFKPL	NetMHCpan	116.1	1434.7	12.357	153	0.17	452.867	1779.655	3.93	3440.74	281.64	1434.7	116.1	2009.601749	709.7575157	1549.708446	624.0939895	M7	0.514285714	0.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.162	153	0	0	NA	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.738450922	sgMsh2	cell line
chr2	146460717	146460717	T	C	ENSMUST00000109986.8	5	ENSMUSG00000037110	missense	I/V	109	Ralgapa2	ENSMUST00000109986.8:c.325A>G	ENSMUSP00000105613.2:p.Ile109Val	H-2-Kb	9	3	9	FFRWHYQSV	FFRWHYQSI	SMM	325.17	359.013	1.104	125	0.168	353.047	397.168	1.125	411.29	335.2	1082	1393.4	359.0128555	325.1696473	383.0451784	370.8941642	M7	-1.428571429	-1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.182	125	64	10	0.15625	2qG1	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.829617702	sgMsh2	cell line
chr2	127804943	127804943	A	G	ENSMUST00000028858.7	1	ENSMUSG00000027379	missense	F/L	806	Bub1	ENSMUST00000028858.7:c.2416T>C	ENSMUSP00000028858.7:p.Phe806Leu	H-2-Kb	9	7	5	NSWELYIGM	NSWEFYIGM	NetMHCpan	313.5	33.5	0.107	107	0.178	385.433	70.587	0.183	26.27	375.4	33.5	313.5	107.67379	395.4667729	126.5464598	412.3348098	M7	0.585714286	0.585714286	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.168	107	81	23	0.283950617	2qF1	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.765800956	sgMsh2	cell line
chr2	157169951	157169951	T	A	ENSMUST00000029170.7	1	ENSMUSG00000027641	missense	I/F	695	Rbl1	ENSMUST00000029170.7:c.2083A>T	ENSMUSP00000029170.7:p.Ile695Phe	H-2-Kb	9	9	3	LSFSPGQAL	LSISPGQAL	NetMHC	401.58	1818.42	4.528	128	0.219	492.319	1877.978	3.815	1818.42	401.58	2647.2	466.9	1445.805924	517.7379503	1937.536979	721.5227015	M7	0.3	0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.218	128	51	12	0.235294118	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.993717907	sgMsh2	cell line
chr2	164215417	164215417	T	C	ENSMUST00000109376.8	1	ENSMUSG00000018211	missense	N/S	18	Wfdc15b	ENSMUST00000109376.8:c.53A>G	ENSMUSP00000105001.2:p.Asn18Ser	H-2-Kb	9	4	8	VTILLCCSM	VTILLCCNM	NetMHC	424.54	183.95	0.433	122	0.139	454.203	325.663	0.717	183.95	424.54	252.2	450	399.1259819	464.6329446	407.6148523	458.4056903	M7	2.6	2.942857143	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.165	122	0	0	NA	2qH3	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.752125939	sgMsh2	cell line
chr2	160753658	160753658	T	C	ENSMUST00000103115.7	1	ENSMUSG00000016933	missense	Y/H	509	Plcg1	ENSMUST00000103115.7:c.1525T>C	ENSMUSP00000099404.1:p.Tyr509His	H-2-Kb	9	6	6	EWYPHHFVL	EWYPHYFVL	SMM	204.696	58.494	0.286	80	0.237	326.923	129.606	0.396	278.91	720.61	181.9	407.1	58.49382211	204.6963035	77.31255038	246.7459312	M7	0.214285714	0.214285714	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.244	80	115	21	0.182608696	2qH2	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr3	92031460	92031460	C	T	ENSMUST00000047660.4	1	ENSMUSG00000042244	missense	T/I	314	Pglyrp3	ENSMUST00000047660.4:c.941C>T	ENSMUSP00000035737.4:p.Thr314Ile	H-2-Db	9	9	3	YLISNYLLM	YLTSNYLLM	NetMHC	23.32	358.54	15.375	70	0.171	74.757	395.072	5.285	358.54	23.32	577.8	76.8	374.645051	72.71432886	415.4990164	79.90427218	M7	1.2	1.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.182	70	0	0	NA	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.829617702	sgMsh2	cell line
chr3	59319877	59319877	CT	C	ENSMUST00000039419.11	5	ENSMUSG00000036334	FS	K/X	2125	Igsf10	ENSMUST00000039419.11:c.6374del	ENSMUSP00000037246.6:p.Lys2125ArgfsTer50	H-2-Db	9	21	0	RSLGNPSQM	NA	SMM	101.069	NA	NA	166	0.235	166.796	NA	NA	NA	272.27	NA	231.6	NA	101.0694727	NA	101.992914	M7	-0.585714286	-0.585714286	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;Vardict	3	0.253	166	1	0	0	3qD	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr3	45381123	45381123	A	G	ENSMUST00000166126.6	1	ENSMUSG00000049100	missense	N/S	624	Pcdh10	ENSMUST00000166126.6:c.1871A>G	ENSMUSP00000131073.1:p.Asn624Ser	H-2-Db	9	5	7	YSIVRGSEM	YSIVRGNEM	NetMHCpan	330.2	270.2	0.818	29	0.103	467.622	585.178	1.251	571.09	507.07	270.2	330.2	599.2664992	428.173712	775.4789257	599.1975101	M7	0.2	0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.149	29	0	0	NA	3qB	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.679192515	sgMsh2	cell line
chr3	27239540	27239540	T	G	ENSMUST00000046515.14	1	ENSMUSG00000027698	missense	L/R	149	Nceh1	ENSMUST00000046515.14:c.446T>G	ENSMUSP00000045864.8:p.Leu149Arg	H-2-Kb	8	5	7	VSIEYRRV	VSIEYRLV	NetMHC	5.85	8.14	1.391	109	0.183	16.448	28.261	1.718	8.14	5.85	19.9	16.5	36.62182643	16.39607892	43.62545806	18.4391119	M7	-0.842857143	-0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.203	109	72	10	0.138888889	3qA3	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.925342822	sgMsh2	cell line
chr3	105005546	105005546	C	A	ENSMUST00000077548.11	1	ENSMUSG00000062127	missense	A/S	341	Cttnbp2nl	ENSMUST00000077548.11:c.1021G>T	ENSMUSP00000076751.5:p.Ala341Ser	H-2-Kb	8	11	1	SAYSYAKA	AAYSYAKA	NetMHC	11.09	24.13	2.176	106	0.292	44.921	75.024	1.67	24.13	11.09	53.5	32.2	129.0446488	68.82401428	96.54727043	57.64212727	M7	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.315	106	97	32	0.329896907	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr3	88245865	88245865	T	G	ENSMUST00000171887.3	1	ENSMUSG00000104445	missense	S/R	261	Rhbg	ENSMUST00000171887.3:c.781A>C	ENSMUSP00000130767.1:p.Ser261Arg	H-2-Kb	8	8	4	STLRTFAL	STLSTFAL	NetMHC	23.82	41.85	1.757	139	0.223	131.83	198.362	1.505	41.85	23.82	149.7	97.8	247.0244836	165.8593656	264.691503	174.8799418	M7	0.9	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.232	139	0	0	NA	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr3	49744983	49744983	A	G	ENSMUST00000035931.12	1	ENSMUSG00000037892	missense	V/A	1010	Pcdh18	ENSMUST00000035931.12:c.3029T>C	ENSMUSP00000039245.7:p.Val1010Ala	H-2-Kb	8	8	4	MSSAFQRL	MSSVFQRL	NetMHC	25.6	16.67	0.651	136	0.169	49.318	38.527	0.781	16.67	25.6	30.2	49.8	46.85328006	48.83599043	51.01994663	60.08139392	M7	-0.171428571	-0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.176	136	0	0	NA	3qC	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.802267668	sgMsh2	cell line
chr3	88245865	88245865	T	G	ENSMUST00000171887.3	1	ENSMUSG00000104445	missense	S/R	261	Rhbg	ENSMUST00000171887.3:c.781A>C	ENSMUSP00000130767.1:p.Ser261Arg	H-2-Kb	8	11	1	RTFALSAL	STFALSAL	NetMHC	38.74	14.57	0.376	139	0.223	51.2	21.65	0.423	14.57	38.74	20.3	53.9	23.00064421	48.49980584	29.22402293	57.90819124	M7	1.785714286	1.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.232	139	0	0	NA	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr3	95324761	95324761	T	C	ENSMUST00000015841.11	1	ENSMUSG00000015697	missense	T/A	1197	Setdb1	ENSMUST00000015841.11:c.3589A>G	ENSMUSP00000015841.5:p.Thr1197Ala	H-2-Kb	8	6	6	IAIKSANM	IAIKSTNM	NetMHC	52.92	235.57	4.451	93	0.226	168.576	468.607	2.78	235.57	52.92	336.4	126.9	600.8139392	210.2519343	666.4076901	228.4230889	M7	0.257142857	0.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.249	93	79	18	0.227848101	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr3	59217615	59217615	A	G	ENSMUST00000196583.4	5	ENSMUSG00000036353	missense	V/A	213	P2ry12	ENSMUST00000196583.4:c.638T>C	ENSMUSP00000143036.1:p.Val213Ala	H-2-Kb	8	8	4	IVIACYSL	IVIVCYSL	NetMHC	84.61	66.24	0.783	170	0.176	116.467	110.623	0.95	66.24	84.61	99.7	89.8	156.5813381	163.2074578	121.5458122	143.1330745	M7	2.1	2.2	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.186	170	4	0	0	3qD	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.847851058	sgMsh2	cell line
chr3	59319877	59319877	CT	C	ENSMUST00000039419.11	5	ENSMUSG00000036334	FS	K/X	2125	Igsf10	ENSMUST00000039419.11:c.6374del	ENSMUSP00000037246.6:p.Lys2125ArgfsTer50	H-2-Kb	8	45	0	TGSYFMPM	NA	NetMHCpan	71.2	NA	NA	166	0.235	309.636	NA	NA	NA	93.57	NA	71.2	NA	535.475987	NA	525.7024488	M7	0.357142857	0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.253	166	1	0	0	3qD	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr3	28794409	28794409	G	A	ENSMUST00000060500.8	1	ENSMUSG00000050192	missense	C/Y	139	Eif5a2	ENSMUST00000060500.8:c.416G>A	ENSMUSP00000050289.7:p.Cys139Tyr	H-2-Kb	8	7	5	VSVMYAMS	VSVMCAMS	SMM	72.734	814.217	11.194	217	0.244	100.979	2855.808	28.281	5114.17	120.91	4897.4	389.8	814.2166892	72.73442335	792.027024	81.04757034	M7	0.985714286	1.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.232	217	11	3	0.272727273	3qA3	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr3	59217615	59217615	A	G	ENSMUST00000196583.4	5	ENSMUSG00000036353	missense	V/A	213	P2ry12	ENSMUST00000196583.4:c.638T>C	ENSMUSP00000143036.1:p.Val213Ala	H-2-Kb	8	9	3	VIACYSLI	VIVCYSLI	NetMHCpan	203.7	96.5	0.474	170	0.176	265.587	146.812	0.553	73.1	238.26	96.5	203.7	197.1242255	292.9139126	202.1808416	392.4099402	M7	2.142857143	2.142857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.186	170	4	0	0	3qD	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.847851058	sgMsh2	cell line
chr3	59319877	59319877	CT	C	ENSMUST00000039419.11	5	ENSMUSG00000036334	FS	K/X	2125	Igsf10	ENSMUST00000039419.11:c.6374del	ENSMUSP00000037246.6:p.Lys2125ArgfsTer50	H-2-Kb	8	16	0	LSWTVRSL	NA	NetMHCpan	175.3	NA	NA	166	0.235	208.072	NA	NA	NA	288.96	NA	175.3	NA	234.2825811	NA	181.861178	M7	0.042857143	0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.253	166	1	0	0	3qD	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr3	106164811	106164811	A	G	ENSMUST00000063062.8	1	ENSMUSG00000040809	missense	V/A	16	Chil3	ENSMUST00000063062.8:c.47T>C	ENSMUSP00000053923.8:p.Val16Ala	H-2-Kb	8	6	6	AILLNAQL	AILLNVQL	SMMPMBEC	190.432	549.212	2.884	564	0.11	366.043	1259.005	3.439	1937.13	491.24	1821.8	847.9	696.209588	240.8463117	549.2119775	190.4320313	M7	1.528571429	1.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.109	564	0	0	NA	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.496858954	sgMsh2	cell line
chr3	69575824	69575824	A	G	ENSMUST00000061826.2	1	ENSMUSG00000043300	missense	Y/H	35	B3galnt1	ENSMUST00000061826.2:c.103T>C	ENSMUSP00000058363.1:p.Tyr35His	H-2-Kb	8	7	5	LVIWHLSL	LVIWYLSL	NetMHCpan	130.4	33.6	0.258	97	0.206	429.29	80.664	0.188	62.76	492.62	33.6	130.4	111.6194813	432.2549746	98.56892043	426.324214	M7	1.628571429	1.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.218	97	19	7	0.368421053	3qE1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.993717907	sgMsh2	cell line
chr3	102758173	102758173	T	C	ENSMUST00000029451.11	1	ENSMUSG00000027858	missense	L/S	96	Tspan2	ENSMUST00000029451.11:c.287T>C	ENSMUSP00000029451.5:p.Leu96Ser	H-2-Kb	8	5	7	SFFTCLSV	SFFTCLLV	SMM	328.655	421.444	1.282	247	0.198	440.138	525.068	1.193	573.99	518.25	1185.7	674	421.444121	328.6548155	476.1458462	362.0261985	M7	2.085714286	2.085714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.211	247	121	15	0.123966942	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.961809534	sgMsh2	cell line
chr3	68927791	68927791	A	G	ENSMUST00000107812.7	5	ENSMUSG00000027778	missense	I/T	439	Ift80	ENSMUST00000107812.7:c.1316T>C	ENSMUSP00000103442.1:p.Ile439Thr	H-2-Kb	8	11	1	TIFLFEAS	IIFLFEAS	SMM	114.483	40.902	0.357	94	0.234	496.639	214.122	0.431	378.83	1363.31	368.3	827.8	40.90157201	114.482736	59.94321055	165.4778997	M7	1.628571429	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.248	94	36	5	0.138888889	3qE1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr3	59319877	59319877	CT	C	ENSMUST00000039419.11	5	ENSMUSG00000036334	FS	K/X	2125	Igsf10	ENSMUST00000039419.11:c.6374del	ENSMUSP00000037246.6:p.Lys2125ArgfsTer50	H-2-Kb	9	44	0	MTGSYFMPM	NA	NetMHC	50.32	NA	NA	166	0.235	82.887	NA	NA	NA	50.32	NA	50.4	NA	115.3745446	NA	141.6609011	M7	0.357142857	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.253	166	1	0	0	3qD	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr3	59217615	59217615	A	G	ENSMUST00000196583.4	5	ENSMUSG00000036353	missense	V/A	213	P2ry12	ENSMUST00000196583.4:c.638T>C	ENSMUSP00000143036.1:p.Val213Ala	H-2-Kb	9	8	4	IVIACYSLI	IVIVCYSLI	NetMHC	82.85	63.52	0.767	170	0.176	152.628	129.073	0.846	63.52	82.85	149.1	123.6	125.6348137	198.6598028	132.5104107	181.6561058	M7	2.142857143	2.2	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.186	170	4	0	0	3qD	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.847851058	sgMsh2	cell line
chr3	102758173	102758173	T	C	ENSMUST00000029451.11	1	ENSMUSG00000027858	missense	L/S	96	Tspan2	ENSMUST00000029451.11:c.287T>C	ENSMUSP00000029451.5:p.Leu96Ser	H-2-Kb	9	10	2	LSVIFAAEV	LLVIFAAEV	NetMHC	100.12	2383.66	23.808	247	0.198	382.003	2468.916	6.463	2383.66	100.12	2025.6	168	2884.762076	599.9430132	2554.171179	596.0051329	M7	2.257142857	2.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.211	247	121	15	0.123966942	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.961809534	sgMsh2	cell line
chr3	55783246	55783246	G	A	ENSMUST00000075422.5	NA	ENSMUSG00000056947	missense	V/M	85	Mab21l1	ENSMUST00000075422.5:c.253G>A	ENSMUSP00000074878.4:p.Val85Met	H-2-Kb	9	3	9	VLYLNQMGM	VLYLNQMGV	NetMHCpan	134.8	338.8	2.513	131	0.214	231.63	435.522	1.88	202.64	152.01	338.8	134.8	532.243051	311.2504586	661.0738832	400.1750427	M7	-0.157142857	0.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.231	131	1	0	0	3qC	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr3	68927791	68927791	A	G	ENSMUST00000107812.7	5	ENSMUSG00000027778	missense	I/T	439	Ift80	ENSMUST00000107812.7:c.1316T>C	ENSMUSP00000103442.1:p.Ile439Thr	H-2-Kb	9	11	1	TIFLFEAST	IIFLFEAST	NetMHC	181.4	78.59	0.433	94	0.234	236.705	140.504	0.594	78.59	181.4	219.4	418.7	139.6722084	239.3922023	141.3350901	234.0183969	M7	0.885714286	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.248	94	36	5	0.138888889	3qE1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr3	59319877	59319877	CT	C	ENSMUST00000039419.11	5	ENSMUSG00000036334	FS	K/X	2125	Igsf10	ENSMUST00000039419.11:c.6374del	ENSMUSP00000037246.6:p.Lys2125ArgfsTer50	H-2-Kb	9	36	0	PTMSFHSPM	NA	SMM	151.743	NA	NA	166	0.235	205.998	NA	NA	NA	181.72	NA	235.2	NA	151.7434661	NA	230.2767015	M7	0.028571429	0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.253	166	1	0	0	3qD	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr3	92031460	92031460	C	T	ENSMUST00000047660.4	1	ENSMUSG00000042244	missense	T/I	314	Pglyrp3	ENSMUST00000047660.4:c.941C>T	ENSMUSP00000035737.4:p.Thr314Ile	H-2-Kb	9	7	5	KGYLISNYL	KGYLTSNYL	NetMHCpan	161.4	239	1.481	70	0.171	329.632	285.872	0.867	142.55	202.06	239	161.4	332.7438214	457.2039776	662.5978159	692.2293355	M7	0.742857143	0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.182	70	0	0	NA	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.829617702	sgMsh2	cell line
chr3	18103736	18103736	C	A	ENSMUST00000035625.6	1	ENSMUSG00000039519	missense	R/M	73	Cyp7b1	ENSMUST00000035625.6:c.218G>T	ENSMUSP00000037487.6:p.Arg73Met	H-2-Kb	9	3	9	LTFLKTLQM	LTFLKTLQR	SMMPMBEC	202.418	2730.549	13.49	94	0.287	248.191	4964.832	20.004	6991.27	265.57	14313.8	235.1	2938.393807	261.2823058	2730.549161	202.4184057	M7	0.6	1.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.292	94	0	0	NA	3qA1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr3	49744983	49744983	A	G	ENSMUST00000035931.12	1	ENSMUSG00000037892	missense	V/A	1010	Pcdh18	ENSMUST00000035931.12:c.3029T>C	ENSMUSP00000039245.7:p.Val1010Ala	H-2-Kb	9	10	2	SAFQRLLPA	SVFQRLLPA	NetMHCpan	169.1	221.8	1.312	136	0.169	325.995	371.397	1.139	424.18	359.31	221.8	169.1	391.8411118	348.4255546	350.9538411	303.5638135	M7	0.371428571	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.176	136	0	0	NA	3qC	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.802267668	sgMsh2	cell line
chr3	59319877	59319877	CT	C	ENSMUST00000039419.11	5	ENSMUSG00000036334	FS	K/X	2125	Igsf10	ENSMUST00000039419.11:c.6374del	ENSMUSP00000037246.6:p.Lys2125ArgfsTer50	H-2-Kb	9	46	0	GSYFMPMEL	NA	NetMHCpan	233.3	NA	NA	166	0.235	268.388	NA	NA	NA	477.81	NA	233.3	NA	242.1642333	NA	294.6117067	M7	0.571428571	0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.253	166	1	0	0	3qD	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr3	93443526	93443526	A	G	ENSMUST00000064257.5	5	ENSMUSG00000052415	missense	Q/R	91	Tchh	ENSMUST00000064257.5:c.272A>G	ENSMUSP00000069525.5:p.Gln91Arg	H-2-Kb	9	7	5	YALDRAAEL	YALDQAAEL	SMM	453.012	1368.075	3.02	140	0.25	474.117	1769.9	3.733	2087.83	556.82	1828.8	475.9	1368.075294	453.0123063	1710.999962	472.3348608	M7	-0.042857143	-0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.254	140	0	0	NA	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr3	134829585	134829585	A	G	ENSMUST00000029822.5	1	ENSMUSG00000028172	missense	T/A	105	Tacr3	ENSMUST00000029822.5:c.313A>G	ENSMUSP00000029822.4:p.Thr105Ala	H-2-Db	9	10	2	RAVTNYFLV	RTVTNYFLV	NetMHC	9.05	101.4	11.204	150	0.047	34.59	225.444	6.518	101.4	9.05	146.4	15.9	408.9027205	62.8955617	304.4878727	53.28070958	M7	1.357142857	1.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.049	150	2	0	0	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.223358612	sgMsh2	cell line
chr4	35709180	35709180	G	A	ENSMUST00000164772.7	1	ENSMUSG00000045083	missense	L/F	267	Lingo2	ENSMUST00000164772.7:c.799C>T	ENSMUSP00000130423.1:p.Leu267Phe	H-2-Db	9	11	1	FAFKHLVYL	LAFKHLVYL	NetMHCpan	46.3	222.5	4.806	155	0.368	183.812	686.922	3.737	631.56	111.43	222.5	46.3	1108.204731	375.508697	742.2838301	256.1946168	M7	0.885714286	1.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.372	155	0	0	NA	4qA5	chr4-22376272-60156942	3	2	1	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr3	159515518	159515518	A	T	ENSMUST00000120272.7	1	ENSMUSG00000028175	missense	K/M	162	Depdc1a	ENSMUST00000120272.7:c.485A>T	ENSMUSP00000113216.1:p.Lys162Met	H-2-Db	9	4	8	FSQENTEMI	FSQENTEKI	NetMHCpan	102.5	156.8	1.53	164	0.232	139.828	186.102	1.331	162.01	143.12	156.8	102.5	210.1938476	139.8363244	224.6828893	139.8202261	M7	-1.185714286	-1.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.22	164	2	0	0	3qH4	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr3	117686686	117686686	T	C	ENSMUST00000238937.1	NA	ENSMUSG00000033342	missense	S/P	373	Plppr5	ENSMUST00000238937.1:c.1117T>C	ENSMUSP00000159092.1:p.Ser373Pro	H-2-Db	9	8	8	FSLHWTSPL	FSLHWTSSL	NetMHC	330.52	2263.68	6.849	220	0.236	339	1754.915	5.177	2263.68	330.52	3034.5	504.4	1232.02636	346.4335945	1246.149077	331.5660076	M7	0.057142857	0.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.233	220	0	0	NA	3qG1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr3	126981840	126981840	T	G	ENSMUST00000182078.8	5	ENSMUSG00000032826	missense	N/H	831	Ank2	ENSMUST00000182078.8:c.2491A>C	ENSMUSP00000138753.3:p.Asn831His	H-2-Kb	8	10	2	MHYLRYSL	MNYLRYSL	NetMHC	24.95	7.35	0.295	165	0.255	127.674	38.762	0.304	7.35	24.95	8.7	56.4	68.82401428	198.9481935	81.60936526	225.2890066	M7	-0.5	-0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.252	165	1	0	0	3qG2	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr3	127032016	127032016	T	C	ENSMUST00000182994.7	1	ENSMUSG00000032826	missense	T/A	445	Ank2	ENSMUST00000182994.7:c.1333A>G	ENSMUSP00000138089.1:p.Thr445Ala	H-2-Kb	8	12	1	AAKLFPPL	TAKLFPPL	NetMHCpan	52.4	50	0.954	135	0.193	91.882	75.718	0.824	63.18	71.37	50	52.4	97.89037676	123.5207728	88.25513833	112.3931906	M7	0.728571429	0.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.197	135	0	0	NA	3qG2	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.897992788	sgMsh2	cell line
chr3	116895535	116895535	T	C	ENSMUST00000195905.4	5	ENSMUSG00000033386	missense	Y/H	352	Frrs1	ENSMUST00000195905.4:c.1054T>C	ENSMUSP00000143255.1:p.Tyr352His	H-2-Kb	8	6	6	ITYEKHNV	ITYEKYNV	NetMHCpan	72.9	26.7	0.366	202	0.252	114.948	62.295	0.542	19.92	95.08	26.7	72.9	97.89037676	134.8155538	117.9614222	155.8619122	M7	-1.7	-1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.262	202	101	11	0.108910891	3qG1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr3	148837574	148837574	C	A	ENSMUST00000197567.4	2	ENSMUSG00000028184	missense	R/M	838	Adgrl2	ENSMUST00000197567.4:c.2513G>T	ENSMUSP00000143626.1:p.Arg838Met	H-2-Kb	8	4	8	FAILMAHM	FAILMAHR	NetMHC	134.67	11710.49	86.957	140	0.229	323.503	7529.07	23.274	11710.49	134.67	13904.9	232.3	2628.693795	471.7805149	3347.649647	414.7056956	M7	1.785714286	1.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	140	21	0	0	3qH3	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr4	35709180	35709180	G	A	ENSMUST00000164772.7	1	ENSMUSG00000045083	missense	L/F	267	Lingo2	ENSMUST00000164772.7:c.799C>T	ENSMUSP00000130423.1:p.Leu267Phe	H-2-Kb	8	6	6	STVPFFAF	STVPFLAF	NetMHCpan	105.2	262.4	2.494	155	0.368	341.149	733.128	2.149	589.78	143.11	262.4	105.2	876.4759423	539.1877292	913.5661511	541.6765067	M7	1.728571429	1.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.372	155	0	0	NA	4qA5	chr4-22376272-60156942	3	2	1	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr4	41023681	41023681	A	C	ENSMUST00000098143.10	1	ENSMUSG00000028423	missense	D/A	1030	Nfx1	ENSMUST00000098143.10:c.3089A>C	ENSMUSP00000095747.4:p.Asp1030Ala	H-2-Kb	8	8	4	IIHALAQV	IIHDLAQV	NetMHC	185.61	552.39	2.976	81	0.222	215.133	495.329	2.302	552.39	185.61	1150.3	532.2	438.2682402	229.4774419	388.8123042	200.7890385	M7	1.342857143	1.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.219	81	23	6	0.260869565	4qA5	chr4-22376272-60156942	3	2	1	0.9	4.102505121	NA	1	0.998276246	sgMsh2	cell line
chr3	108883558	108883558	T	C	ENSMUST00000102620.9	1	ENSMUSG00000045326	missense	T/A	51	Fndc7	ENSMUST00000102620.9:c.151A>G	ENSMUSP00000099680.3:p.Thr51Ala	H-2-Kb	8	5	7	ITVEWTAV	ITVEWTTV	SMMPMBEC	324.146	510.199	1.574	191	0.251	373.787	554.126	1.482	686.4	388.04	465.6	437.7	598.0534499	359.5340277	510.1994663	324.1455024	M7	0.628571429	0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.253	191	0	0	NA	3qF3	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr3	108464426	108464426	AT	A	ENSMUST00000106625.9	5	ENSMUSG00000040412	FS	M/X	711	5330417C22Rik	ENSMUST00000106625.9:c.2131del	ENSMUSP00000102236.3:p.Met711TrpfsTer38	H-2-Kb	8	34	0	SQPMSARL	NA	NetMHC	403.32	NA	NA	44	0.318	468.776	NA	NA	NA	403.32	NA	1378.8	NA	453.6699358	NA	483.8825938	M7	-0.414285714	-0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.31	44	3	0	0	3qF3	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr3	108464426	108464426	AT	A	ENSMUST00000106625.9	5	ENSMUSG00000040412	FS	M/X	711	5330417C22Rik	ENSMUST00000106625.9:c.2131del	ENSMUSP00000102236.3:p.Met711TrpfsTer38	H-2-Kb	8	17	0	MSLTSGSL	NA	SMM	194.42	NA	NA	44	0.318	316.602	NA	NA	NA	408.95	NA	475.7	NA	194.4195797	NA	224.2538976	M7	0.585714286	0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.31	44	3	0	0	3qF3	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr4	52995837	52995837	C	T	ENSMUST00000188045.6	1	ENSMUSG00000015242	missense	A/V	95	Nipsnap3a	ENSMUST00000188045.6:c.284C>T	ENSMUSP00000140727.1:p.Ala95Val	H-2-Kb	8	10	2	RVAVYKAL	RAAVYKAL	SMM	294.266	289.561	0.984	64	0.281	307.769	334.747	1.088	327.72	438.89	367.5	299.5	289.5609548	294.2659418	341.7747702	316.0385059	M7	1.514285714	1.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.301	64	0	0	NA	4qB2	chr4-22376272-60156942	3	2	1	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr3	146650711	146650711	TG	T	ENSMUST00000049703.5	1	ENSMUSG00000090202	FS	P/X	147	4930503B20Rik	ENSMUST00000049703.5:c.441del	ENSMUSP00000051453.5:p.Ile148SerfsTer28	H-2-Kb	8	13	0	WTQDFLRL	NA	SMM	151.614	NA	NA	158	0.196	313.889	NA	NA	NA	463.44	NA	520.5	NA	151.6142424	NA	164.3387578	M7	-0.257142857	-0.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.208	158	0	0	NA	3qH2	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.948134517	sgMsh2	cell line
chr4	41121239	41121239	A	G	ENSMUST00000030138.8	1	ENSMUSG00000028430	missense	V/A	339	Nol6	ENSMUST00000030138.8:c.1016T>C	ENSMUSP00000030138.8:p.Val339Ala	H-2-Kb	8	6	6	VALLKAWL	VALLKVWL	SMM	374.749	1083.278	2.891	63	0.397	406.808	1087.033	2.672	1746.99	486.53	971.2	435.4	1083.278191	374.7485835	1090.787117	378.2160895	M7	1.457142857	1.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.377	63	31	9	0.290322581	4qA5	chr4-22376272-60156942	3	2	1	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr4	35709180	35709180	G	A	ENSMUST00000164772.7	1	ENSMUSG00000045083	missense	L/F	267	Lingo2	ENSMUST00000164772.7:c.799C>T	ENSMUSP00000130423.1:p.Leu267Phe	H-2-Kb	8	9	3	PFFAFKHL	PFLAFKHL	SMM	137.639	575.096	4.178	155	0.368	376.724	1947.175	5.169	3241.61	602.53	3839.3	939.6	575.0955406	137.6385219	652.7396586	150.9176382	M7	0.985714286	0.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.372	155	0	0	NA	4qA5	chr4-22376272-60156942	3	2	1	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr3	127032016	127032016	T	C	ENSMUST00000182994.7	1	ENSMUSG00000032826	missense	T/A	445	Ank2	ENSMUST00000182994.7:c.1333A>G	ENSMUSP00000138089.1:p.Thr445Ala	H-2-Kb	9	11	2	IAAKLFPPL	ITAKLFPPL	NetMHCpan	24.7	26.4	1.069	135	0.193	78.474	101.297	1.291	52.54	47.02	26.4	24.7	151.3944658	109.9284236	150.0548372	116.211739	M7	0.728571429	1.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.197	135	0	0	NA	3qG2	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.897992788	sgMsh2	cell line
chr3	117686686	117686686	T	C	ENSMUST00000238937.1	NA	ENSMUSG00000033342	missense	S/P	373	Plppr5	ENSMUST00000238937.1:c.1117T>C	ENSMUSP00000159092.1:p.Ser373Pro	H-2-Kb	9	8	8	FSLHWTSPL	FSLHWTSSL	NetMHC	62.53	137.09	2.192	220	0.236	116.026	214.118	1.845	137.09	62.53	128.7	64.9	291.1454451	167.1513929	302.8656361	177.1128208	M7	0.057142857	0.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.233	220	0	0	NA	3qG1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr4	35709180	35709180	G	A	ENSMUST00000164772.7	1	ENSMUSG00000045083	missense	L/F	267	Lingo2	ENSMUST00000164772.7:c.799C>T	ENSMUSP00000130423.1:p.Leu267Phe	H-2-Kb	9	11	1	FAFKHLVYL	LAFKHLVYL	NetMHCpan	33	23.5	0.712	155	0.368	70.763	61.326	0.867	57	66.69	23.5	33	72.79641631	74.83590241	65.65230826	75.37893549	M7	0.885714286	1.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.372	155	0	0	NA	4qA5	chr4-22376272-60156942	3	2	1	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr3	138480720	138480720	A	G	ENSMUST00000029804.12	1	ENSMUSG00000005813	missense	Y/H	83	Metap1	ENSMUST00000029804.12:c.247T>C	ENSMUSP00000029804.8:p.Tyr83His	H-2-Kb	9	7	5	AGYRHTGKL	AGYRYTGKL	NetMHCpan	63.1	17.5	0.277	284	0.215	163.612	99.448	0.608	18.49	100.63	17.5	63.1	271.7127388	338.9299909	180.405594	226.5948317	M7	-1.457142857	-1.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.23	284	111	26	0.234234234	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr3	116605233	116605233	GT	G	ENSMUST00000198311.4	1	ENSMUSG00000027959	FS	F/X	55	Sass6	ENSMUST00000198311.4:c.168del	ENSMUSP00000143233.1:p.Leu57CysfsTer14	H-2-Kb	9	14	0	ITLLYLRKI	NA	NetMHCpan	81.7	NA	NA	96	0.229	238.592	NA	NA	NA	113.06	NA	81.7	NA	466.7775928	NA	364.1245828	M7	0.885714286	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.227	96	15	3	0.2	3qG1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr4	35709180	35709180	G	A	ENSMUST00000164772.7	1	ENSMUSG00000045083	missense	L/F	267	Lingo2	ENSMUST00000164772.7:c.799C>T	ENSMUSP00000130423.1:p.Leu267Phe	H-2-Kb	9	8	4	VPFFAFKHL	VPFLAFKHL	NetMHC	151.29	104.06	0.688	155	0.368	273.695	272.994	0.997	104.06	151.29	187.8	162.7	358.1871488	384.6892055	496.8782653	472.3348608	M7	0.985714286	1.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.372	155	0	0	NA	4qA5	chr4-22376272-60156942	3	2	1	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr3	129331941	129331941	T	C	ENSMUST00000029658.13	1	ENSMUSG00000028024	missense	T/A	181	Enpep	ENSMUST00000029658.13:c.541A>G	ENSMUSP00000029658.7:p.Thr181Ala	H-2-Kb	9	6	6	SVYRLAMEF	SVYRLTMEF	NetMHCpan	116.3	119.4	1.027	76	0.158	275.807	228.177	0.827	172.49	180.84	119.4	116.3	283.863792	370.7746213	398.3364054	554.9450731	M7	0.142857143	0.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.181	76	0	0	NA	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.825059363	sgMsh2	cell line
chr3	146597208	146597208	GC	G	ENSMUST00000029837.13	1	ENSMUSG00000028186	FS	A/X	2	Uox	ENSMUST00000029837.13:c.7del	ENSMUSP00000029837.7:p.His3IlefsTer47	H-2-Kb	9	23	0	KTWSKFSIF	NA	NetMHCpan	182.6	NA	NA	343	0.187	234.934	NA	NA	NA	228.26	NA	182.6	NA	241.607271	NA	312.7879401	M7	0.528571429	0.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.199	343	0	0	NA	3qH2	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.907109466	sgMsh2	cell line
chr3	129331941	129331941	T	C	ENSMUST00000029658.13	1	ENSMUSG00000028024	missense	T/A	181	Enpep	ENSMUST00000029658.13:c.541A>G	ENSMUSP00000029658.7:p.Thr181Ala	H-2-Kb	9	10	2	LAMEFKGWL	LTMEFKGWL	NetMHCpan	278.5	245.2	0.88	76	0.158	349.325	476.163	1.363	470.1	347.81	245.2	278.5	483.1811688	350.8407252	482.2253089	373.4650797	M7	-0.028571429	0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.181	76	0	0	NA	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.825059363	sgMsh2	cell line
chr3	108464426	108464426	AT	A	ENSMUST00000106625.9	5	ENSMUSG00000040412	FS	M/X	711	5330417C22Rik	ENSMUST00000106625.9:c.2131del	ENSMUSP00000102236.3:p.Met711TrpfsTer38	H-2-Kb	9	38	0	SARLSSSPL	NA	SMM	306.274	NA	NA	44	0.318	447.926	NA	NA	NA	360.98	NA	1051.3	NA	306.2739079	NA	534.872168	M7	-0.128571429	-0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.31	44	3	0	0	3qF3	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr3	125438107	125438107	G	T	ENSMUST00000173932.7	5	ENSMUSG00000027971	missense	M/I	108	Ndst4	ENSMUST00000173932.7:c.324G>T	ENSMUSP00000133341.2:p.Met108Ile	H-2-Kb	9	4	8	SSRFQYQIV	SSRFQYQMV	SMM	368.222	285.831	0.776	184	0.255	434.275	314.794	0.725	116	378.49	471.8	848.3	285.8314418	368.2222268	343.7557727	490.0608399	M7	-0.185714286	-0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.258	184	0	0	NA	3qG1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr3	146650711	146650711	TG	T	ENSMUST00000049703.5	1	ENSMUSG00000090202	FS	P/X	147	4930503B20Rik	ENSMUST00000049703.5:c.441del	ENSMUSP00000051453.5:p.Ile148SerfsTer28	H-2-Kb	9	30	0	MTLKHLYHI	NA	NetMHCpan	217.1	NA	NA	158	0.196	488.474	NA	NA	NA	389.31	NA	217.1	NA	587.6381732	NA	626.9746764	M7	0.071428571	0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.208	158	0	0	NA	3qH2	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.948134517	sgMsh2	cell line
chr4	41121239	41121239	A	G	ENSMUST00000030138.8	1	ENSMUSG00000028430	missense	V/A	339	Nol6	ENSMUST00000030138.8:c.1016T>C	ENSMUSP00000030138.8:p.Val339Ala	H-2-Kb	9	10	2	KAWLRQREL	KVWLRQREL	NetMHC	411.44	379.85	0.923	63	0.397	461.856	516.33	1.118	379.85	411.44	523.2	470.7	509.4598929	453.0123063	594.6343592	514.3396441	M7	-1.328571429	-1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.377	63	31	9	0.290322581	4qA5	chr4-22376272-60156942	3	2	1	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr3	126981840	126981840	T	G	ENSMUST00000182078.8	5	ENSMUSG00000032826	missense	N/H	831	Ank2	ENSMUST00000182078.8:c.2491A>C	ENSMUSP00000138753.3:p.Asn831His	H-2-Kb	9	10	2	MHYLRYSLE	MNYLRYSLE	SMM	59.856	24.553	0.41	165	0.255	255.108	63.301	0.248	97.41	442.88	277.7	550	24.55330734	59.85631826	29.19106903	67.33641643	M7	-0.542857143	-0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.252	165	1	0	0	3qG2	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr3	138282520	138282520	G	A	ENSMUST00000004232.9	1	ENSMUSG00000074207	missense	S/N	115	Adh1	ENSMUST00000004232.9:c.344G>A	ENSMUSP00000004232.9:p.Ser115Asn	H-2-Kb	9	5	7	SNFCSRNDL	SNFCSRSDL	NetMHCpan	447.4	283	0.633	225	0.156	453.632	386.125	0.851	602.55	1034.69	283	447.4	391.8411118	448.8590645	380.4083139	458.4056903	M7	-0.457142857	-0.457142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.165	225	1	1	1	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.752125939	sgMsh2	cell line
chr4	70433397	70433397	A	G	ENSMUST00000107359.8	1	ENSMUSG00000039270	missense	S/P	496	Megf9	ENSMUST00000107359.8:c.1486T>C	ENSMUSP00000102982.2:p.Ser496Pro	H-2-Db	9	9	3	SSPENSTSA	SSSENSTSA	NetMHC	122.38	4730.47	38.654	74	0.459	327.502	1353.736	4.134	4730.47	122.38	1651.7	300.5	723.8023686	354.5030696	1055.77166	543.9638013	M7	-1.3	-1.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.464	74	7	0	0	4qC2	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	2	1	sgMsh2	cell line
chr4	101137712	101137712	T	C	ENSMUST00000038463.14	1	ENSMUSG00000035275	missense	V/A	544	Raver2	ENSMUST00000038463.14:c.1631T>C	ENSMUSP00000043142.8:p.Val544Ala	H-2-Db	9	11	1	AASKNQTSL	VASKNQTSL	SMM	116.043	148.806	1.282	104	0.231	127.192	176.848	1.39	287.14	241.2	174.4	116.8	148.8058483	116.0432811	179.295752	137.5846553	M7	-1.342857143	-1.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.248	104	0	0	NA	4qC6	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr4	98973478	98973478	A	G	ENSMUST00000030286.13	5	ENSMUSG00000028556	missense	V/A	1334	Dock7	ENSMUST00000030286.13:c.4001T>C	ENSMUSP00000030286.7:p.Val1334Ala	H-2-Db	9	10	2	WALKNADET	WVLKNADET	SMMPMBEC	178.061	1136.501	6.383	77	0.364	273.241	2878.792	10.536	7340.81	297.24	4163.1	531.5	1594.483392	249.2412955	1136.501465	178.0614887	M7	-1.357142857	-0.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.365	77	42	15	0.357142857	4qC6	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr4	116152926	116152926	C	A	ENSMUST00000120083.7	5	ENSMUSG00000028700	missense	L/M	162	Pomgnt1	ENSMUST00000120083.7:c.484C>A	ENSMUSP00000112751.1:p.Leu162Met	H-2-Kb	8	8	4	AMVMFLNM	AMVLFLNM	NetMHCpan	41.6	54.2	1.303	101	0.04	137.672	130.38	0.947	54.82	46.92	54.2	41.6	216.1424152	284.9311953	205.9396641	228.4230889	M7	1.857142857	1.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.044	101	58	0	0	4qD1	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	0.200566917	sgMsh2	cell line
chr4	125694046	125694046	A	G	ENSMUST00000030676.7	1	ENSMUSG00000001985	missense	Y/C	653	Grik3	ENSMUST00000030676.7:c.1958A>G	ENSMUSP00000030676.7:p.Tyr653Cys	H-2-Kb	8	8	4	ISSCTANL	ISSYTANL	SMMPMBEC	159.86	137.322	0.859	56	0.25	169.524	84.061	0.496	20.23	175.84	30.8	372.2	155.5034397	163.2074578	137.3219621	159.8600704	M7	0.328571429	0.428571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.294	56	0	0	NA	4qD2.2	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr4	116152926	116152926	C	A	ENSMUST00000120083.7	5	ENSMUSG00000028700	missense	L/M	162	Pomgnt1	ENSMUST00000120083.7:c.484C>A	ENSMUSP00000112751.1:p.Leu162Met	H-2-Kb	9	8	4	AMVMFLNMV	AMVLFLNMV	NetMHC	129.16	145.53	1.127	101	0.04	211.539	192.257	0.909	145.53	129.16	1225.5	793.7	159.9963223	192.8013187	224.5173978	230.2767015	M7	2.185714286	2.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.044	101	58	0	0	4qD1	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	0.200566917	sgMsh2	cell line
chr4	121082857	121082857	TA	T	ENSMUST00000058754.8	1	ENSMUSG00000043207	FS	F/X	197	Zmpste24	ENSMUST00000058754.8:c.591del	ENSMUSP00000053900.2:p.Phe197LeufsTer9	H-2-Kb	9	5	7	IGGDYFLYM	IGGDYFFIY	NetMHCpan	84.1	5310.6	63.146	67	0.328	202.807	3020.239	14.892	6860.81	204.59	5310.6	84.1	716.3248211	250.6744092	729.8775406	201.0249672	M7	0.285714286	0.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.297	67	86	1	0.011627907	4qD2.2	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr4	120162006	120162006	T	G	ENSMUST00000030384.4	1	ENSMUSG00000028635	missense	I/S	64	Edn2	ENSMUST00000030384.4:c.191T>G	ENSMUSP00000030384.4:p.Ile64Ser	H-2-Kb	9	4	8	VYFCHLDSI	VYFCHLDII	SMMPMBEC	195.997	246.178	1.256	64	0.25	229.431	322.023	1.404	397.38	243.53	800.5	302.1	246.6664026	215.332707	246.1784313	195.99726	M7	0.871428571	0.871428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.237	64	0	0	NA	4qD2.1	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr4	125641560	125641560	T	C	ENSMUST00000030676.7	1	ENSMUSG00000001985	missense	M/T	250	Grik3	ENSMUST00000030676.7:c.749T>C	ENSMUSP00000030676.7:p.Met250Thr	H-2-Kb	9	11	1	TMTEYYHFI	MMTEYYHFI	NetMHCpan	222.7	208.8	0.938	95	0.179	286.573	314.364	1.097	429.61	412.07	208.8	222.7	295.876178	291.1454451	332.8511027	282.000579	M7	-0.385714286	-0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.208	95	0	0	NA	4qD2.2	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	0.948134517	sgMsh2	cell line
chr5	77345396	77345396	T	C	ENSMUST00000031167.5	1	ENSMUSG00000029250	missense	M/T	1075	Polr2b	ENSMUST00000031167.5:c.3224T>C	ENSMUSP00000031167.5:p.Met1075Thr	H-2-Db	9	3	9	IQILNRQPT	IQILNRQPM	NetMHC	257.87	9.72	0.038	116	0.207	332.261	20.79	0.063	9.72	257.87	15.3	681.9	26.2796756	384.2554182	30.3088878	280.265732	M7	-0.785714286	-0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.206	116	160	42	0.2625	5qC3.3	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.939017839	sgMsh2	cell line
chr5	24415437	24415437	AG	A	ENSMUST00000196296.1	5	ENSMUSG00000038276	FS	Q/X	195	Asic3	ENSMUST00000196296.1:c.589del	ENSMUSP00000143083.1:p.Ala197GlnfsTer77	H-2-Db	9	59	0	TARRNPLPL	NA	SMM	164.672	NA	NA	77	0.234	227.965	NA	NA	NA	391.53	NA	273.3	NA	164.6720909	NA	182.6291089	M7	-1.157142857	-1.157142857	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;Vardict	3	0.239	77	0	0	NA	5qA3	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr5	3836853	3836853	A	G	ENSMUST00000080085.8	1	ENSMUSG00000000600	missense	S/G	701	Krit1	ENSMUST00000080085.8:c.2101A>G	ENSMUSP00000078985.4:p.Ser701Gly	H-2-Db	10	10	2	HGMENKMSFI	HSMENKMSFI	NetMHC	64.23	26.07	0.406	95	0.316	378.895	309.112	0.816	26.07	64.23	62	152.1	556.2243536	605.6894373	620.3974442	617.5469768	M7	-0.357142857	-0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.32	95	47	9	0.191489362	5qA1	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	2	1	sgMsh2	cell line
chr5	49987499	49987499	C	T	ENSMUST00000030971.6	1	ENSMUSG00000029090	missense	S/N	584	Adgra3	ENSMUST00000030971.6:c.1751G>A	ENSMUSP00000030971.5:p.Ser584Asn	H-2-Kb	8	9	3	VSNTFSSL	VSSTFSSL	NetMHC	6.05	7.18	1.187	32	0.156	9.733	17.653	1.814	7.18	6.05	12.2	12.2	23.10681036	9.262751223	24.70244836	10.20328459	M7	0	0.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.187	32	82	31	0.37804878	5qB3	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.852409397	sgMsh2	cell line
chr5	16359015	16359015	G	A	ENSMUST00000039370.13	1	ENSMUSG00000040118	missense	D/N	899	Cacna2d1	ENSMUST00000039370.13:c.2695G>A	ENSMUSP00000049457.7:p.Asp899Asn	H-2-Kb	8	8	4	KSYNYQSV	KSYDYQSV	NetMHC	6.19	12.68	2.048	75	0.373	17.147	27.778	1.62	12.68	6.19	15.4	11.4	40.15503419	22.89496585	51.49202839	28.88949831	M7	-1	-1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.388	75	3	0	0	5qA3	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	2	1	sgMsh2	cell line
chr5	35087007	35087007	T	C	ENSMUST00000050709.3	1	ENSMUSG00000044716	missense	S/P	532	Dok7	ENSMUST00000050709.3:c.1594T>C	ENSMUSP00000059538.3:p.Ser532Pro	H-2-Kb	8	9	3	STPRYAQI	STSRYAQI	NetMHC	12.58	63.7	5.064	55	0.255	64.57	177.694	2.752	63.7	12.58	195.8	62.5	194.4195797	72.56713881	160.9681675	66.64076901	M7	-0.757142857	-0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.276	55	0	0	NA	5qB2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr5	23496459	23496459	A	T	ENSMUST00000115128.7	5	ENSMUSG00000029004	missense	H/L	836	Kmt2e	ENSMUST00000115128.7:c.2507A>T	ENSMUSP00000110781.1:p.His836Leu	H-2-Kb	8	4	8	STILHRYL	STILHRYH	NetMHC	28.67	18992.06	662.437	102	0.255	52.546	9474.202	180.303	18992.06	28.67	12757.7	53.6	6190.70344	51.49202839	2665.262568	61.62259741	M7	0.342857143	0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.237	102	71	16	0.225352113	5qA3	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr5	3643522	3643522	T	C	ENSMUST00000119783.1	1	ENSMUSG00000007415	missense	S/G	216	Gatad1	ENSMUST00000119783.1:c.646A>G	ENSMUSP00000113271.1:p.Ser216Gly	H-2-Kb	8	14	6	FTSFFGAL	FTSFFSAL	NetMHCpan	84.6	48.2	0.57	78	0.282	138.265	84.851	0.614	69.3	145.69	48.2	84.6	100.4014535	130.8398387	122.3883275	150.2242346	M7	1.328571429	1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.319	78	26	7	0.269230769	5qA1	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	2	1	sgMsh2	cell line
chr5	41762007	41762007	A	G	ENSMUST00000060820.7	1	ENSMUSG00000049691	missense	F/L	213	Nkx3-2	ENSMUST00000060820.7:c.637T>C	ENSMUSP00000051990.6:p.Phe213Leu	H-2-Kb	8	9	3	AALSHAQV	AAFSHAQV	NetMHC	191.25	27.34	0.143	30	0.2	284.277	55.738	0.196	27.34	191.25	45.9	507.3	68.19303192	284.9311953	65.5752568	283.6220554	M7	0.585714286	0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.219	30	0	0	NA	5qB3	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.998276246	sgMsh2	cell line
chr4	150897465	150897465	T	A	ENSMUST00000105674.7	5	ENSMUSG00000028964	missense	Y/F	139	Park7	ENSMUST00000105674.7:c.416A>T	ENSMUSP00000101299.1:p.Tyr139Phe	H-2-Kb	8	11	1	FSYSESRV	YSYSESRV	SMMPMBEC	135.75	171.688	1.265	41	0.439	244.427	279.259	1.143	332.19	316.77	385.1	417.5	226.3288934	172.0838049	171.6880231	135.7500506	M7	-1.071428571	-1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.421	41	338	82	0.24260355	4qE2	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	2	1	sgMsh2	cell line
chr5	53700084	53700084	A	G	ENSMUST00000031093.4	1	ENSMUSG00000029193	missense	V/A	328	Cckar	ENSMUST00000031093.4:c.983T>C	ENSMUSP00000031093.3:p.Val328Ala	H-2-Kb	8	8	4	VIVALFFL	VIVVLFFL	SMM	123.806	118.779	0.959	84	0.214	250.341	189.98	0.759	254.72	356.15	789.3	353.2	118.7790917	123.8055176	125.2391179	147.4823333	M7	3.385714286	3.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.228	84	0	0	NA	5qC1	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr5	16618861	16618861	C	CA	ENSMUST00000199581.4	1	ENSMUSG00000028864	FS	-/X	685-686	Hgf	ENSMUST00000199581.4:c.2059dup	ENSMUSP00000143424.1:p.Met687AsnfsTer59	H-2-Kb	8	31	0	SSWYFCSS	NA	SMM	132.966	NA	NA	120	0.283	211.846	NA	NA	NA	521.79	NA	264.2	NA	132.965815	NA	159.4924025	M7	0.1	0.1	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.274	120	0	0	NA	5qA3	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr5	44541790	44541790	T	C	ENSMUST00000070748.9	1	ENSMUSG00000039706	missense	Y/C	102	Ldb2	ENSMUST00000070748.9:c.305A>G	ENSMUSP00000067737.5:p.Tyr102Cys	H-2-Kb	8	6	6	VTDLYCIL	VTDLYYIL	SMM	140.197	103.214	0.736	138	0.21	259.244	165.93	0.64	223.19	600.89	199.2	346.8	103.2143305	140.197413	132.6600022	171.6880231	M7	1.3	1.357142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.222	138	0	0	NA	5qB3	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr5	53642073	53642073	GA	G	ENSMUST00000037618.12	1	ENSMUSG00000039191	FS	K/X	108	Rbpj	ENSMUST00000037618.12:c.330del	ENSMUSP00000040694.6:p.Glu111SerfsTer21	H-2-Kb	8	24	0	KSLNPVRL	NA	SMM	339.422	NA	NA	215	0.242	495.706	NA	NA	NA	602.6	NA	1460.6	NA	339.4220093	NA	388.8123042	M7	0.2	0.2	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;Vardict	3	0.239	215	28	1	0.035714286	5qC1	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr4	145110843	145110843	A	G	ENSMUST00000036579.13	5	ENSMUSG00000020220	missense	L/P	2730	Vps13d	ENSMUST00000036579.13:c.8189T>C	ENSMUSP00000043240.7:p.Leu2730Pro	H-2-Kb	8	9	3	AEPTFSRL	AELTFSRL	SMMPMBEC	241.402	93.916	0.389	42	0.214	485.047	174.205	0.359	243.76	724.77	1066.5	3183.6	104.6501849	245.323979	93.91608928	241.4015198	M7	-0.642857143	-0.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	42	20	4	0.2	4qE1	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr5	34459136	34459136	A	T	ENSMUST00000180376.7	5	ENSMUSG00000037210	missense	Q/L	885	Fam193a	ENSMUST00000180376.7:c.2654A>T	ENSMUSP00000138082.1:p.Gln885Leu	H-2-Kb	8	8	4	YNFLDAFM	YNFQDAFM	SMMPMBEC	387.918	387.026	0.998	93	0.108	464.204	744.613	1.604	1610.78	845.89	1102.2	538.7	378.2160895	389.7086091	387.0258739	387.9180607	M7	0.871428571	0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.114	93	45	7	0.155555556	5qB2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.519650649	sgMsh2	cell line
chr5	35087007	35087007	T	C	ENSMUST00000050709.3	1	ENSMUSG00000044716	missense	S/P	532	Dok7	ENSMUST00000050709.3:c.1594T>C	ENSMUSP00000059538.3:p.Ser532Pro	H-2-Kb	9	8	4	ASTPRYAQI	ASTSRYAQI	NetMHC	109.33	62.84	0.575	55	0.255	205.599	158.66	0.772	62.84	109.33	229.2	215.2	179.5188262	308.3968972	137.8002483	195.99726	M7	-0.757142857	-0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.276	55	0	0	NA	5qB2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr5	16618861	16618861	C	CA	ENSMUST00000199581.4	1	ENSMUSG00000028864	FS	-/X	685-686	Hgf	ENSMUST00000199581.4:c.2059dup	ENSMUSP00000143424.1:p.Met687AsnfsTer59	H-2-Kb	9	32	0	SWYFCSSSI	NA	SMM	110.69	NA	NA	120	0.283	162.07	NA	NA	NA	127.69	NA	222.7	NA	110.690411	NA	196.4490803	M7	0.871428571	0.871428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.274	120	0	0	NA	5qA3	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr5	3643522	3643522	T	C	ENSMUST00000119783.1	1	ENSMUSG00000007415	missense	S/G	216	Gatad1	ENSMUST00000119783.1:c.646A>G	ENSMUSP00000113271.1:p.Ser216Gly	H-2-Kb	9	13	7	RFTSFFGAL	RFTSFFSAL	NetMHC	151.7	76.94	0.507	78	0.282	257.266	163.349	0.635	76.94	151.7	94.9	169.3	231.7981684	345.2311699	384.8132346	490.0608399	M7	1.328571429	1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.319	78	26	7	0.269230769	5qA1	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	2	1	sgMsh2	cell line
chr5	3818616	3818616	A	G	ENSMUST00000080085.8	1	ENSMUSG00000000600	missense	H/R	360	Krit1	ENSMUST00000080085.8:c.1079A>G	ENSMUSP00000078985.4:p.His360Arg	H-2-Kb	9	7	5	SSPLRFAAG	SSPLHFAAG	NetMHC	218.11	205.07	0.94	86	0.163	431.596	459.66	1.065	205.07	218.11	544.5	672.9	475.4556362	459.3143352	443.8640791	403.8778168	M7	0.528571429	0.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.18	86	60	12	0.2	5qA1	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.820501024	sgMsh2	cell line
chr5	16618861	16618861	C	CA	ENSMUST00000199581.4	1	ENSMUSG00000028864	FS	-/X	685-686	Hgf	ENSMUST00000199581.4:c.2059dup	ENSMUSP00000143424.1:p.Met687AsnfsTer59	H-2-Kb	9	31	0	SSWYFCSSS	NA	SMM	211.402	NA	NA	120	0.283	263.69	NA	NA	NA	254.38	NA	273	NA	211.4024421	NA	341.3893746	M7	0.1	0.1	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.274	120	0	0	NA	5qA3	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr5	34459136	34459136	A	T	ENSMUST00000180376.7	5	ENSMUSG00000037210	missense	Q/L	885	Fam193a	ENSMUST00000180376.7:c.2654A>T	ENSMUSP00000138082.1:p.Gln885Leu	H-2-Kb	9	6	6	CLYNFLDAF	CLYNFQDAF	NetMHC	291.16	403.36	1.385	93	0.108	490.048	654.218	1.335	403.36	291.16	495.4	509	813.0364195	471.0966327	1084.551052	637.1621954	M7	0.414285714	0.657142857	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.114	93	45	7	0.155555556	5qB2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.519650649	sgMsh2	cell line
chr4	143726070	143726070	A	G	ENSMUST00000078695.4	5	ENSMUSG00000046435	missense	T/A	24	Gm13078	ENSMUST00000078695.4:c.70A>G	ENSMUSP00000077761.4:p.Thr24Ala	H-2-Kb	9	10	2	LAISALPNL	LTISALPNL	NetMHCpan	254.7	300.1	1.178	89	0.506	387.777	507.146	1.308	378.8	314.12	300.1	254.7	635.4918716	461.4344339	904.1698059	700.2449734	M7	1.142857143	1.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.477	89	0	0	NA	4qE1	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	2	1	sgMsh2	cell line
chr5	53700084	53700084	A	G	ENSMUST00000031093.4	1	ENSMUSG00000029193	missense	V/A	328	Cckar	ENSMUST00000031093.4:c.983T>C	ENSMUSP00000031093.3:p.Val328Ala	H-2-Kb	9	10	2	VALFFLCWM	VVLFFLCWM	SMM	75.008	84.355	1.125	84	0.214	212.356	265.535	1.25	414.59	323.96	871.7	448.6	84.35483883	75.00841699	116.4796347	100.7511472	M7	2.385714286	3.1	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.228	84	0	0	NA	5qC1	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr4	144271678	144271678	T	C	ENSMUST00000035757.12	1	ENSMUSG00000036749	missense	T/A	332	Pramel5	ENSMUST00000035757.12:c.994A>G	ENSMUSP00000044222.6:p.Thr332Ala	H-2-Kb	9	7	5	MSYTAFKPS	MSYTTFKPS	SMM	231.265	192.801	0.834	213	0.362	372.961	355.999	0.955	352.87	551.33	411.5	343.9	192.8013187	231.2650474	359.1286062	402.0221668	M7	-0.528571429	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.351	213	0	0	NA	4qE1	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr5	8686194	8686194	AT	A	ENSMUST00000047753.4	1	ENSMUSG00000040584	FS	F/X	196	Abcb1a	ENSMUST00000047753.4:c.591del	ENSMUSP00000041204.4:p.Phe197LeufsTer5	H-2-Kb	9	7	6	AMATFLVVL	AMATFFGGF	SMM	205.641	113.008	0.55	174	0.201	256.042	110.604	0.432	107.1	582.18	108.2	301.1	113.0082111	205.6411387	139.0752983	210.9842323	M7	2.842857143	2.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2011	174	35	1	0.028571429	5qA1	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.916681978	sgMsh2	cell line
chr5	130258986	130258986	T	C	ENSMUST00000040213.12	1	ENSMUSG00000056310	missense	F/L	20	Tyw1	ENSMUST00000040213.12:c.58T>C	ENSMUSP00000037173.6:p.Phe20Leu	H-2-Db	9	5	7	SLWMNRLYI	SLWMNRFYI	NetMHC	100.57	60.84	0.605	127	0.031	123.657	90.168	0.729	60.84	100.57	91.3	122.7	96.74310008	130.8036913	89.0368937	124.6149077	M7	0	0	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.044	127	57	2	0.035087719	5qG1.3	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.200566917	sgMsh2	cell line
chr5	129845765	129845765	A	G	ENSMUST00000031402.11	5	ENSMUSG00000029447	missense	N/S	515	Cct6a	ENSMUST00000031402.11:c.1544A>G	ENSMUSP00000158738.1:p.Asn515Ser	H-2-Db	9	10	2	TSILLVDEI	TNILLVDEI	SMMPMBEC	163.897	1015.243	6.194	286	0.192	196.247	1821.823	9.283	3742.47	206.02	2391.6	244.6	1252.045178	186.4747356	1015.242991	163.896621	M7	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.202	286	702	119	0.16951567	5qG1.3	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.920784483	sgMsh2	cell line
chr5	137031401	137031401	GC	G	ENSMUST00000190827.6	1	ENSMUSG00000037428	FS	A/X	139	Vgf	ENSMUST00000190827.6:c.422del	ENSMUSP00000140815.1:p.Pro141LeufsTer22	H-2-Db	9	13	1	LALRLRTAI	NA	SMM	155.46	NA	NA	11	0.364	197.442	NA	NA	NA	208.43	NA	988.1	NA	155.4604785	NA	186.4532681	M7	0.6	0.6	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.3636	11	0	0	NA	5qG2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	2	1	sgMsh2	cell line
chr5	122334415	122334415	G	C	ENSMUST00000049009.6	1	ENSMUSG00000038569	missense	L/V	228	Rad9b	ENSMUST00000049009.6:c.682C>G	ENSMUSP00000036177.6:p.Leu228Val	H-2-Kb	8	4	8	ITFCFKEV	ITFCFKEL	NetMHCpan	16.5	4.9	0.297	137	0.212	33.639	9.744	0.29	7.88	25.23	4.9	16.5	12.04314735	43.02689433	11.60753495	42.04748265	M7	0.6	0.642857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.225	137	9	0	0	5qF	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr5	130258986	130258986	T	C	ENSMUST00000040213.12	1	ENSMUSG00000056310	missense	F/L	20	Tyw1	ENSMUST00000040213.12:c.58T>C	ENSMUSP00000037173.6:p.Phe20Leu	H-2-Kb	8	8	4	MNRLYIYM	MNRFYIYM	NetMHCpan	65.9	33.5	0.508	127	0.031	93.573	129.865	1.388	135.64	76.55	33.5	65.9	124.0909187	110.5961477	175.2830817	145.794117	M7	-0.057142857	-0.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.044	127	57	2	0.035087719	5qG1.3	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.200566917	sgMsh2	cell line
chr5	130258986	130258986	T	C	ENSMUST00000040213.12	1	ENSMUSG00000056310	missense	F/L	20	Tyw1	ENSMUST00000040213.12:c.58T>C	ENSMUSP00000037173.6:p.Phe20Leu	H-2-Kb	8	4	8	LSLWMNRL	LSLWMNRF	NetMHC	105.98	1817.95	17.154	127	0.031	140.238	1999.687	14.259	1817.95	105.98	1031.1	106.8	2849.311953	175.2830817	2181.423563	173.6760767	M7	-0.028571429	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.044	127	57	2	0.035087719	5qG1.3	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.200566917	sgMsh2	cell line
chr5	128602175	128602175	T	G	ENSMUST00000117102.3	NA	ENSMUSG00000081683	missense	F/V	320	Fzd10	ENSMUST00000117102.3:c.958T>G	ENSMUSP00000114114.2:p.Phe320Val	H-2-Kb	8	6	6	LVLYYVGM	LVLYYFGM	NetMHCpan	67.9	82.6	1.216	106	0.198	231.943	180.72	0.779	115.55	159.98	82.6	67.9	312.4208431	400.6268017	245.8895091	303.9065077	M7	1.585714286	1.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.204	106	0	0	NA	5qG1.3	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.929901161	sgMsh2	cell line
chr5	124646720	124646720	G	C	ENSMUST00000037865.12	1	ENSMUSG00000038023	missense	M/I	314	Atp6v0a2	ENSMUST00000037865.12:c.942G>C	ENSMUSP00000039737.8:p.Met314Ile	H-2-Kb	8	4	8	AIYHMLNI	AIYHMLNM	NetMHCpan	91.3	50.6	0.554	61	0.131	200.452	111.002	0.554	73.5	173.53	50.6	91.3	148.504632	240.2923806	155.1457917	227.3735801	M7	0.957142857	0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.166	61	58	13	0.224137931	5qF	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.756684278	sgMsh2	cell line
chr5	137031401	137031401	GC	G	ENSMUST00000190827.6	1	ENSMUSG00000037428	FS	A/X	139	Vgf	ENSMUST00000190827.6:c.422del	ENSMUSP00000140815.1:p.Pro141LeufsTer22	H-2-Kb	8	10	4	VAPLALRL	NA	NetMHC	207.33	NA	NA	11	0.364	269.565	NA	NA	NA	207.33	NA	220.9	NA	318.2291802	NA	418.5429201	M7	1.271428571	1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.3636	11	0	0	NA	5qG2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	2	1	sgMsh2	cell line
chr5	122559719	122559719	T	C	ENSMUST00000031426.13	1	ENSMUSG00000029469	missense	H/R	565	Ift81	ENSMUST00000031426.13:c.1694A>G	ENSMUSP00000031426.7:p.His565Arg	H-2-Kb	8	8	4	SKYRYTNC	SKYHYTNC	SMM	88.867	165.859	1.866	262	0.263	164.978	520.745	3.156	824.85	208.13	921.7	665.9	165.8593656	88.86689373	216.6406749	121.8260042	M7	-1.814285714	-1.814285714	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.27	262	39	9	0.230769231	5qF	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr5	123029094	123029094	A	G	ENSMUST00000121652.7	1	ENSMUSG00000049686	missense	Q/R	110	Orai1	ENSMUST00000121652.7:c.329A>G	ENSMUSP00000113097.1:p.Gln110Arg	H-2-Kb	8	5	7	VAMVEVRL	VAMVEVQL	NetMHCpan	161.3	312.1	1.935	69	0.217	224.693	395.574	1.761	446.21	236.7	312.1	161.3	660.2980276	382.5956254	344.9371732	212.686537	M7	1.128571429	1.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.235	69	32	7	0.21875	5qF	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr5	114446235	114446235	A	G	ENSMUST00000112239.8	1	ENSMUSG00000041939	missense	N/S	52	Mvk	ENSMUST00000112239.8:c.155A>G	ENSMUSP00000107858.2:p.Asn52Ser	H-2-Kb	8	8	4	VSVSLPNI	VSVNLPNI	NetMHC	241.52	285.96	1.184	121	0.207	297.918	341.33	1.146	285.96	241.52	319.8	246.1	362.8607551	351.3500341	386.1357391	349.7357273	M7	0.828571429	0.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.22	121	79	18	0.227848101	5qF	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr5	115127330	115127330	A	G	ENSMUST00000060798.5	1	ENSMUSG00000046562	missense	F/L	148	Unc119b	ENSMUST00000060798.5:c.442T>C	ENSMUSP00000055475.5:p.Phe148Leu	H-2-Kb	8	5	7	YQFTPALL	YQFTPAFL	SMM	296.306	196.671	0.664	233	0.215	335.523	309.714	0.923	532.95	346.9	393.1	369.1	196.6708524	296.3056959	226.3288934	324.1455024	M7	0.914285714	0.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.214	233	73	19	0.260273973	5qF	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.975484551	sgMsh2	cell line
chr5	127650704	127650704	T	C	ENSMUST00000118139.2	1	ENSMUSG00000049971	missense	V/A	80	Glt1d1	ENSMUST00000118139.2:c.239T>C	ENSMUSP00000113864.1:p.Val80Ala	H-2-Kb	8	5	7	HSIPFGAI	HSIPFGVI	NetMHCpan	293.7	660.3	2.248	92	0.239	460.739	1062.469	2.306	2797.35	496.24	660.3	293.7	1166.11129	495.1536674	958.826437	426.324214	M7	1.542857143	1.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.238	92	1	0	0	5qG1.2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr5	128602175	128602175	T	G	ENSMUST00000117102.3	NA	ENSMUSG00000081683	missense	F/V	320	Fzd10	ENSMUST00000117102.3:c.958T>G	ENSMUSP00000114114.2:p.Phe320Val	H-2-Kb	8	4	8	VFLVLYYV	VFLVLYYF	SMM	220.161	1001.705	4.55	106	0.198	469.155	1030.407	2.196	1056.8	648.75	5057.8	2653.3	1001.705365	220.1608027	1004.014535	289.5609548	M7	2.314285714	2.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.204	106	0	0	NA	5qG1.3	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.929901161	sgMsh2	cell line
chr5	115127330	115127330	A	G	ENSMUST00000060798.5	1	ENSMUSG00000046562	missense	F/L	148	Unc119b	ENSMUST00000060798.5:c.442T>C	ENSMUSP00000055475.5:p.Phe148Leu	H-2-Kb	9	3	9	VRYQFTPAL	VRYQFTPAF	NetMHC	25.89	145.31	5.613	233	0.215	64.362	149.784	2.327	145.31	25.89	263.6	60	115.9070894	68.72424857	154.2588183	89.17641311	M7	0.185714286	0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.214	233	73	19	0.260273973	5qF	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.975484551	sgMsh2	cell line
chr5	108797917	108797917	T	A	ENSMUST00000172140.2	5	ENSMUSG00000090961	missense	K/M	608	Vmn2r8	ENSMUST00000172140.2:c.1823A>T	ENSMUSP00000126953.1:p.Lys608Met	H-2-Kb	9	5	7	VTFVKYMDT	VTFVKYKDT	NetMHC	118.73	352.78	2.971	394	0.228	133.741	296.916	2.22	352.78	118.73	835.9	251.6	241.0515897	148.2893631	183.7595844	119.1927939	M7	-0.071428571	1.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.235	394	0	0	NA	5qF	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr5	131086045	131086045	A	G	ENSMUST00000086023.11	1	ENSMUSG00000034040	missense	Y/H	206	Galnt17	ENSMUST00000086023.11:c.616T>C	ENSMUSP00000083187.5:p.Tyr206His	H-2-Kb	9	11	1	HVHKRYPGL	YVHKRYPGL	SMM	154.565	98.653	0.638	70	0.2	178.483	95.626	0.536	57.72	173.63	92.6	394.1	98.65293264	154.5645878	108.4551052	183.3369491	M7	-1.585714286	-1.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.192	70	0	0	NA	5qG2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.875201093	sgMsh2	cell line
chr5	87887345	87887345	C	T	ENSMUST00000129757.8	5	ENSMUSG00000009580	missense	P/L	56	Odam	ENSMUST00000129757.8:c.167C>T	ENSMUSP00000117898.2:p.Pro56Leu	H-2-Kb	9	7	5	SWIPLFPGF	SWIPPFPGF	SMM	167.151	225.481	1.349	52	0.231	248.263	377.632	1.521	237.36	193.66	1017.7	578.5	225.4810248	167.1513929	517.9048762	302.8656361	M7	1.471428571	1.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.245	52	0	0	NA	5qE1	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr5	87887345	87887345	C	T	ENSMUST00000129757.8	5	ENSMUSG00000009580	missense	P/L	56	Odam	ENSMUST00000129757.8:c.167C>T	ENSMUSP00000117898.2:p.Pro56Leu	H-2-Kb	9	3	9	GAFNSWIPL	GAFNSWIPP	SMMPMBEC	199.182	1466.392	7.362	52	0.231	221.206	6480.976	29.298	11495.56	212.21	12317	257.9	1061.964502	230.202481	1466.391721	199.1819593	M7	0.614285714	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.245	52	0	0	NA	5qE1	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr5	135121526	135121526	C	A	ENSMUST00000005507.9	1	ENSMUSG00000005373	missense	P/T	141	Mlxipl	ENSMUST00000005507.9:c.421C>A	ENSMUSP00000005507.3:p.Pro141Thr	H-2-Kb	9	11	1	TVCGFVTPL	PVCGFVTPL	NetMHCpan	152.6	3159	20.701	54	0.333	242.87	1969.514	8.109	3894.65	215.81	3159	152.6	780.0276543	423.7502818	634.234701	269.9292823	M7	1.514285714	1.7	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.347	54	1	0	0	5qG2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	2	1	sgMsh2	cell line
chr5	137758482	137758482	TG	T	ENSMUST00000110985.1	2	ENSMUSG00000029723	FS	L/X	57	Tsc22d4	ENSMUST00000110985.1:c.177del	ENSMUSP00000106613.1:p.Pro60GlnfsTer18	H-2-Kb	9	22	0	VGWTKAFSL	NA	NetMHCpan	103.3	NA	NA	64	0.234	321.493	NA	NA	NA	216.16	NA	103.3	NA	472.1826226	NA	426.8251484	M7	0.3	0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.225	64	0	0	NA	5qG2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr5	100783064	100783064	T	C	ENSMUST00000044684.13	1	ENSMUSG00000035266	missense	T/A	607	Helq	ENSMUST00000044684.13:c.1819A>G	ENSMUSP00000041599.7:p.Thr607Ala	H-2-Kb	9	3	9	IAYHHSGLA	IAYHHSGLT	NetMHC	247.31	291.01	1.177	79	0.241	252.751	227.555	0.9	291.01	247.31	501.5	312.5	164.1005362	254.7475407	163.0234201	250.7552301	M7	-0.471428571	-0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.271	79	9	3	0.333333333	5qE4	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr5	124646720	124646720	G	C	ENSMUST00000037865.12	1	ENSMUSG00000038023	missense	M/I	314	Atp6v0a2	ENSMUST00000037865.12:c.942G>C	ENSMUSP00000039737.8:p.Met314Ile	H-2-Kb	9	3	9	KAIYHMLNI	KAIYHMLNM	NetMHCpan	142.3	108.5	0.762	61	0.131	457.411	270.709	0.592	183.23	299.29	108.5	142.3	358.1871488	676.2542383	360.7862685	615.5310989	M7	0.957142857	0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.166	61	58	13	0.224137931	5qF	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.756684278	sgMsh2	cell line
chr5	110303958	110303958	A	G	ENSMUST00000007296.11	1	ENSMUSG00000007080	missense	T/A	889	Pole	ENSMUST00000007296.11:c.2665A>G	ENSMUSP00000007296.5:p.Thr889Ala	H-2-Kb	9	10	2	LAISYPGAM	LTISYPGAM	NetMHC	321.94	443.75	1.378	138	0.196	444.326	551.545	1.241	443.75	321.94	412.2	409.9	659.3408748	478.7513372	692.2293355	536.1051757	M7	0.585714286	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.195	138	43	14	0.325581395	5qF	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.88887611	sgMsh2	cell line
chr5	134135628	134135628	T	C	ENSMUST00000016088.8	1	ENSMUSG00000015944	missense	F/L	143	Castor2	ENSMUST00000016088.8:c.427T>C	ENSMUSP00000016088.8:p.Phe143Leu	H-2-Kb	9	3	9	VTHTLSSEL	VTHTLSSEF	NetMHC	346.45	965.45	2.787	60	0.3	425.657	893.137	2.098	965.45	346.45	1373.9	488.8	635.4918716	376.7992242	820.8239126	474.5150595	M7	-0.2	0.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.295	60	12	2	0.166666667	5qG2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr5	122559719	122559719	T	C	ENSMUST00000031426.13	1	ENSMUSG00000029469	missense	H/R	565	Ift81	ENSMUST00000031426.13:c.1694A>G	ENSMUSP00000031426.7:p.His565Arg	H-2-Kb	9	8	4	SKYRYTNCM	SKYHYTNCM	SMM	345.231	307.688	0.891	262	0.263	387.24	525.106	1.356	727.92	396.69	751.5	482.5	307.6876041	345.2311699	322.2923521	377.7896015	M7	-0.985714286	-0.985714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.27	262	39	9	0.230769231	5qF	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr5	128602175	128602175	T	G	ENSMUST00000117102.3	NA	ENSMUSG00000081683	missense	F/V	320	Fzd10	ENSMUST00000117102.3:c.958T>G	ENSMUSP00000114114.2:p.Phe320Val	H-2-Kb	9	5	7	FLVLYYVGM	FLVLYYFGM	SMMPMBEC	298.023	330.56	1.109	106	0.198	376.102	368.465	0.98	406.37	422.51	1212.2	922.2	299.3022626	329.6932077	330.5597718	298.0231495	M7	1.585714286	2.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.204	106	0	0	NA	5qG1.3	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.929901161	sgMsh2	cell line
chr5	137587025	137587025	T	C	ENSMUST00000198866.4	1	ENSMUSG00000029716	missense	L/P	773	Tfr2	ENSMUST00000198866.4:c.2318T>C	ENSMUSP00000142720.1:p.Leu773Pro	H-2-Kb	9	5	7	SRFRRQPAL	SRFRRQLAL	SMM	314.13	377.668	1.202	39	0.231	400.801	392.173	0.978	328.62	452.26	413.2	681.9	377.6678362	314.1304236	406.6773641	349.3413547	M7	-0.814285714	-0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	39	0	0	NA	5qG2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr5	128601265	128601265	A	G	ENSMUST00000117102.3	NA	ENSMUSG00000081683	missense	I/M	16	Fzd10	ENSMUST00000117102.3:c.48A>G	ENSMUSP00000114114.2:p.Ile16Met	H-2-Kb	9	9	3	VMMGSCTAI	VMIGSCTAI	SMMPMBEC	459.462	483.337	1.052	20	0.35	484.839	559.431	1.154	618.7	507.18	1098.8	926.3	500.1612019	462.4981501	483.3369531	459.4624246	M7	1.257142857	1.257142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.353	20	0	0	NA	5qG1.3	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	2	1	sgMsh2	cell line
chr6	43167977	43167977	G	T	ENSMUST00000205175.2	5	ENSMUSG00000071481	missense	K/N	306	Olfr437	ENSMUST00000205175.2:c.918G>T	ENSMUSP00000145490.1:p.Lys306Asn	H-2-Db	9	13	5	RALQNKRSV	RALQKKRSV	SMM	153.681	4995.972	32.509	80	0.163	206.324	11301.911	54.778	20445.39	223.6	16256.8	364.5	4995.972049	153.6809371	6347.021946	189.0470915	M7	-1.171428571	-1.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.182	80	0	0	NA	6qB2.1	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.829617702	sgMsh2	cell line
chr6	42357896	42357896	GT	G	ENSMUST00000164375.3	1	ENSMUSG00000029860	FS	C/X	545	Zyx	ENSMUST00000164375.3:c.1637del	ENSMUSP00000126622.1:p.Phe546SerfsTer110	H-2-Kb	8	96	0	HAYGFKPL	NA	NetMHC	16.1	NA	NA	145	0.152	35.719	NA	NA	NA	16.1	NA	26.9	NA	56.59003988	NA	44.53895263	M7	0.171428571	0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.172	145	200	22	0.11	6qB2.1	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.784034312	sgMsh2	cell line
chr6	48906651	48906651	C	T	ENSMUST00000162948.6	1	ENSMUSG00000029811	missense	T/I	487	Aoc1	ENSMUST00000162948.6:c.1460C>T	ENSMUSP00000124085.1:p.Thr487Ile	H-2-Kb	8	11	1	IGYVHATF	TGYVHATF	NetMHC	18.68	93.08	4.983	264	0.167	44.147	138.736	3.143	93.08	18.68	55.9	21.5	235.3639803	84.08915726	184.391119	66.79439184	M7	0.457142857	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.171	264	0	0	NA	6qB2.3	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.779475973	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	8	4	8	VLVSYTRL	VLVSYTRI	NetMHC	19.39	171.38	8.839	156	0.16	31.763	209.772	6.604	171.38	19.39	99.5	20.3	348.1288376	53.67103866	248.1646968	43.22549746	M7	0.642857143	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.165	156	0	0	NA	6qB2.1	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.752125939	sgMsh2	cell line
chr6	8013113	8013113	AT	A	ENSMUST00000115537.1	1	ENSMUSG00000068794	FS	I/X	980	Col28a1	ENSMUST00000115537.1:c.2938del	ENSMUSP00000111199.1:p.Ile980PhefsTer59	H-2-Kb	8	39	0	SAYPLQSL	NA	NetMHC	32.49	NA	NA	90	0.144	67.366	NA	NA	NA	32.49	NA	34.1	NA	100.6329027	NA	158.0301673	M7	0.314285714	0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.15	90	0	0	NA	6qA1	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.683750854	sgMsh2	cell line
chr6	41059465	41059465	G	A	ENSMUST00000103265.4	NA	ENSMUSG00000107486	missense	C/Y	8	Trbv4	ENSMUST00000103265.4:c.23G>A	ENSMUSP00000144909.1:p.Cys8Tyr	H-2-Kb	8	6	3	LSYVAFCL	LSCVAFCL	NetMHC	38.35	2963.86	77.284	182	0.187	79.509	2202.556	27.702	2963.86	38.35	3210.1	53.4	1441.252256	122.3883275	1051.332282	105.6185011	M7	1.857142857	1.857142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.196	182	0	0	NA	6qB1	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.893434449	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	8	6	6	VSYTRLLV	VSYTRILV	NetMHCpan	35.2	39.9	1.134	156	0.16	94.957	84.621	0.891	32.04	39.69	39.9	35.2	129.3421274	150.2242346	135.1263357	158.7596015	M7	0.642857143	0.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.165	156	0	0	NA	6qB2.1	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.752125939	sgMsh2	cell line
chr6	38818458	38818458	T	C	ENSMUST00000161779.7	1	ENSMUSG00000061436	missense	K/R	292	Hipk2	ENSMUST00000161779.7:c.875A>G	ENSMUSP00000124133.1:p.Lys292Arg	H-2-Kb	8	8	4	KQNRFSPL	KQNKFSPL	NetMHC	61.41	154.24	2.512	203	0.158	64.826	136.646	2.108	154.24	61.41	353.3	182.8	116.611129	64.37837347	119.0529058	65.27396586	M7	-1.042857143	-1.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.16	203	42	10	0.238095238	6qB1	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.729334244	sgMsh2	cell line
chr6	7863979	7863979	GT	G	ENSMUST00000040159.5	1	ENSMUSG00000042460	FS	F/X	20	C1galt1	ENSMUST00000040159.5:c.65del	ENSMUSP00000047931.4:p.Leu22TyrfsTer6	H-2-Kb	8	7	7	SAIGFFYV	SAIGFFLC	NetMHCpan	57.3	1444.2	25.204	99	0.162	103.388	1418.262	13.718	3373.28	68.82	1444.2	57.3	1136.946424	137.9558114	1392.323008	151.6142424	M7	2.057142857	2.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1616	99	81	6	0.074074074	6qA1	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.736627586	sgMsh2	cell line
chr6	38982203	38982203	T	C	ENSMUST00000003017.12	1	ENSMUSG00000029925	missense	F/L	107	Tbxas1	ENSMUST00000003017.12:c.319T>C	ENSMUSP00000003017.6:p.Phe107Leu	H-2-Kb	8	4	8	LVENFSNL	LVENFSNF	SMMPMBEC	88.255	1108.511	12.56	278	0.173	120.109	1881.33	15.664	2784.54	111.47	1669.8	195.6	2092.859144	128.7478543	1108.510982	88.25513833	M7	-0.071428571	-0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.17	278	0	0	NA	6qB1	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.774917634	sgMsh2	cell line
chr6	41059465	41059465	G	A	ENSMUST00000103265.4	NA	ENSMUSG00000107486	missense	C/Y	8	Trbv4	ENSMUST00000103265.4:c.23G>A	ENSMUSP00000144909.1:p.Cys8Tyr	H-2-Kb	8	7	2	SYVAFCLL	SCVAFCLL	NetMHCpan	77.4	267.2	3.452	182	0.187	180.57	305.061	1.689	558.92	115.25	267.2	77.4	338.6413603	245.8895091	271.4813499	268.3737286	M7	2.514285714	2.514285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.196	182	0	0	NA	6qB1	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.893434449	sgMsh2	cell line
chr6	18226001	18226001	T	C	ENSMUST00000045706.11	1	ENSMUSG00000041301	missense	F/S	316	Cftr	ENSMUST00000045706.11:c.947T>C	ENSMUSP00000049228.5:p.Phe316Ser	H-2-Kb	8	8	4	SGFSVVFL	SGFFVVFL	SMM	85.063	78.116	0.918	166	0.223	107.341	91.852	0.856	191.57	116.34	87.6	127.1	78.11600059	85.06286381	96.10367602	98.3422182	M7	2.371428571	2.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	166	8	0	0	6qA2	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr6	57137842	57137842	T	C	ENSMUST00000226968.1	NA	ENSMUSG00000115236	missense	S/P	164	Vmn1r11	ENSMUST00000226968.1:c.490T>C	ENSMUSP00000154588.1:p.Ser164Pro	H-2-Kb	8	5	7	KVTKYCPL	KVTKYCSL	NetMHC	129.91	351.04	2.702	287	0.021	157.315	327.2	2.08	351.04	129.91	260.4	166.7	321.1737185	155.5034397	333.2268594	159.1255801	M7	0.428571429	0.428571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.027	287	0	0	NA	6qB3	chr6-56956255-70723407	4	2	2	0.9	4.102505121	NA	1	0.123075154	sgMsh2	cell line
chr6	18226001	18226001	T	C	ENSMUST00000045706.11	1	ENSMUSG00000041301	missense	F/S	316	Cftr	ENSMUST00000045706.11:c.947T>C	ENSMUSP00000049228.5:p.Phe316Ser	H-2-Kb	8	10	2	FSVVFLSV	FFVVFLSV	NetMHC	146.24	1478.79	10.112	166	0.223	163.657	951.578	5.814	1478.79	146.24	4435.5	231.2	393.3145385	168.5543635	424.3654321	158.7596015	M7	2.514285714	2.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	166	8	0	0	6qA2	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr6	36524565	36524565	G	T	ENSMUST00000172278.7	1	ENSMUSG00000045613	missense	K/N	452	Chrm2	ENSMUST00000172278.7:c.1356G>T	ENSMUSP00000130874.1:p.Lys452Asn	H-2-Kb	8	8	4	KTFNHLLM	KTFKHLLM	NetMHCpan	75.3	70.4	0.935	116	0.181	235.527	263.738	1.12	204.82	197.06	70.4	75.3	322.6561891	273.9933359	362.8607551	332.4604589	M7	0.7	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.193	116	0	0	NA	6qB1	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.879759432	sgMsh2	cell line
chr5	142451467	142451467	A	G	ENSMUST00000072837.6	1	ENSMUSG00000056493	missense	N/S	346	Foxk1	ENSMUST00000072837.6:c.1037A>G	ENSMUSP00000072616.5:p.Asn346Ser	H-2-Kb	8	10	2	LSRYFIKV	LNRYFIKV	NetMHCpan	133.4	160.9	1.206	131	0.229	289.37	648.139	2.24	617.48	246.28	160.9	133.4	678.797134	367.0624846	693.0107956	332.4604589	M7	0.142857143	0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.232	131	45	7	0.155555556	5qG2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr5	142472335	142472335	A	C	ENSMUST00000038699.12	1	ENSMUSG00000039623	missense	D/A	421	Ap5z1	ENSMUST00000038699.12:c.1262A>C	ENSMUSP00000041863.8:p.Asp421Ala	H-2-Kb	8	11	1	ASHFLSLL	DSHFLSLL	NetMHCpan	104.9	1978.2	18.858	92	0.261	316.048	1993.045	6.306	4351.3	259.07	1978.2	104.9	1818.61178	387.0258739	2007.890385	373.0267702	M7	1.342857143	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.275	92	23	2	0.086956522	5qG2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr6	48990592	48990592	A	G	ENSMUST00000037696.5	1	ENSMUSG00000039215	missense	E/G	732	Svs1	ENSMUST00000037696.5:c.2195A>G	ENSMUSP00000045221.4:p.Glu732Gly	H-2-Kb	8	10	2	SGRFHGSL	SERFHGSL	SMM	239.188	1056.185	4.416	187	0.241	286.94	2609.437	9.094	5636.07	267.18	3880	306.7	1056.185011	239.1883374	1338.8749	313.8629122	M7	-0.385714286	-0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.246	187	0	0	NA	6qB2.3	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr6	18405230	18405230	T	C	ENSMUST00000090601.11	1	ENSMUSG00000000416	missense	Y/C	1090	Cttnbp2	ENSMUST00000090601.11:c.3269A>G	ENSMUSP00000088089.5:p.Tyr1090Cys	H-2-Kb	8	7	5	SSVTCASM	SSVTYASM	NetMHC	276.55	6.31	0.023	222	0.189	362.299	24.523	0.068	6.31	276.55	15.8	475.5	35.70590129	399.7053856	33.24604589	324.8927349	M7	1.157142857	1.157142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.206	222	1	0	0	6qA2	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.939017839	sgMsh2	cell line
chr6	23969343	23969343	A	G	ENSMUST00000062463.3	NA	ENSMUSG00000043865	missense	S/P	240	Tas2r118	ENSMUST00000062463.3:c.718T>C	ENSMUSP00000053700.3:p.Ser240Pro	H-2-Kb	8	7	5	TFFTPYFL	TFFTSYFL	SMM	135.75	97.217	0.716	220	0.177	250.491	178.628	0.713	321.44	393.85	219.3	307.9	97.21650414	135.7500506	137.9558114	193.0812048	M7	1.228571429	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.172	220	0	0	NA	6qA3.1	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.784034312	sgMsh2	cell line
chr5	139813029	139813030	CT	GC	ENSMUST00000182839.1	3	ENSMUSG00000098140	missense	S/A	127	Gm26938	ENSMUST00000182839.1:c.379_380delinsGC	ENSMUSP00000138120.1:p.Ser127Ala	H-2-Kb	8	6	6	QLFLTAAL	QLFLTSAL	SMM	303.907	686.657	2.259	78	0.269	391.643	788.911	2.014	1092.12	468.7	830.1	487	686.6572344	303.9065077	747.7217263	314.5864409	M7	2.442857143	2.442857143	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.235	78	2	0	0	5qG2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr6	50216364	50216364	A	C	ENSMUST00000031845.12	1	ENSMUSG00000029821	missense	S/A	418	Gsdme	ENSMUST00000031845.12:c.1252T>G	ENSMUSP00000031845.6:p.Ser418Ala	H-2-Kb	8	9	3	ISALCCLL	ISSLCCLL	SMM	267.141	509.026	1.905	297	0.145	368.066	617.218	1.677	725.41	474.56	756.5	451.2	509.0260401	267.1406633	451.5855118	284.9311953	M7	2.485714286	2.585714286	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.154	297	26	3	0.115384615	6qB2.3	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.70198421	sgMsh2	cell line
chr6	7863979	7863979	GT	G	ENSMUST00000040159.5	1	ENSMUSG00000042460	FS	F/X	20	C1galt1	ENSMUST00000040159.5:c.65del	ENSMUSP00000047931.4:p.Leu22TyrfsTer6	H-2-Kb	8	8	6	AIGFFYVL	AIGFFLCS	SMM	203.114	5620.048	27.669	99	0.162	208.426	10027.748	48.112	17473.53	611.87	13528.1	212.8	5620.047679	203.114066	6527.396586	204.0515979	M7	2.342857143	2.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1616	99	81	6	0.074074074	6qA1	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.736627586	sgMsh2	cell line
chr5	142472335	142472335	A	C	ENSMUST00000038699.12	1	ENSMUSG00000039623	missense	D/A	421	Ap5z1	ENSMUST00000038699.12:c.1262A>C	ENSMUSP00000041863.8:p.Asp421Ala	H-2-Kb	8	10	2	FASHFLSL	FDSHFLSL	NetMHCpan	141.3	3750.8	26.545	92	0.261	478.389	3001.845	6.275	9890.2	763.7	3750.8	141.3	2252.890066	471.7805149	2176.406428	484.9980584	M7	1.057142857	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.275	92	23	2	0.086956522	5qG2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr6	23969343	23969343	A	G	ENSMUST00000062463.3	NA	ENSMUSG00000043865	missense	S/P	240	Tas2r118	ENSMUST00000062463.3:c.718T>C	ENSMUSP00000053700.3:p.Ser240Pro	H-2-Kb	8	4	8	TFFTFFTP	TFFTFFTS	SMM	179.366	98.116	0.547	220	0.177	380.318	326.834	0.859	1485.04	1110.12	507.2	549.9	98.11603738	179.3659491	146.4670721	210.7366151	M7	1.171428571	1.3	FALSE	FALSE	TRUE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.172	220	0	0	NA	6qA3.1	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.784034312	sgMsh2	cell line
chr6	7863979	7863979	GT	G	ENSMUST00000040159.5	1	ENSMUSG00000042460	FS	F/X	20	C1galt1	ENSMUST00000040159.5:c.65del	ENSMUSP00000047931.4:p.Leu22TyrfsTer6	H-2-Kb	8	9	5	IGFFYVLN	IGFFLCSQ	SMM	64.378	1562.212	24.266	99	0.162	272.735	2144.606	7.863	5387.49	2507.08	2727	472.4	1562.21211	64.37837347	714.0687051	73.07015019	M7	1.2	2.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1616	99	81	6	0.074074074	6qA1	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.736627586	sgMsh2	cell line
chr6	41059465	41059465	G	A	ENSMUST00000103265.4	NA	ENSMUSG00000107486	missense	C/Y	8	Trbv4	ENSMUST00000103265.4:c.23G>A	ENSMUSP00000144909.1:p.Cys8Tyr	H-2-Kb	9	6	3	LSYVAFCLL	LSCVAFCLL	NetMHC	12.4	422.88	34.103	182	0.187	30.943	494.808	15.991	422.88	12.4	541.3	17	511.811453	44.88590645	477.8042407	66.56562285	M7	2.514285714	2.514285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.196	182	0	0	NA	6qB1	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.893434449	sgMsh2	cell line
chr5	146834249	146834249	CT	C	ENSMUST00000035983.11	1	ENSMUSG00000041453	FS	P/X	18	Rpl21	ENSMUST00000035983.11:c.57del	ENSMUSP00000041652.5:p.Phe19LeufsTer22	H-2-Kb	9	4	9	TRYMFSRPL	TRYMFSRPF	NetMHC	21.65	112.57	5.2	196	0.265	70.47	156.013	2.214	112.57	21.65	137.4	37.4	174.6264398	103.5404385	246.1784313	142.3147781	M7	0.042857143	0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.272	196	10	0	0	5qG3	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr6	7863979	7863979	GT	G	ENSMUST00000040159.5	1	ENSMUSG00000042460	FS	F/X	20	C1galt1	ENSMUST00000040159.5:c.65del	ENSMUSP00000047931.4:p.Leu22TyrfsTer6	H-2-Kb	9	7	7	SAIGFFYVL	SAIGFFLCS	NetMHCpan	16.9	2015.2	119.243	99	0.162	48.34	1212.348	25.08	3254.89	31.2	2015.2	16.9	271.0878168	65.48020042	409.4963169	79.84541822	M7	2.342857143	2.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1616	99	81	6	0.074074074	6qA1	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.736627586	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	9	3	9	LVLVSYTRL	LVLVSYTRI	NetMHC	46.33	202.94	4.38	156	0.16	99.281	285.444	2.875	202.94	46.33	207.6	48.9	371.6293451	149.6614677	363.2871195	157.1267038	M7	0.642857143	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.165	156	0	0	NA	6qB2.1	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.752125939	sgMsh2	cell line
chr6	38982203	38982203	T	C	ENSMUST00000003017.12	1	ENSMUSG00000029925	missense	F/L	107	Tbxas1	ENSMUST00000003017.12:c.319T>C	ENSMUSP00000003017.6:p.Phe107Leu	H-2-Kb	9	3	9	VLVENFSNL	VLVENFSNF	NetMHC	52.53	313.76	5.973	278	0.173	222.433	495.007	2.225	313.76	52.53	154.3	53.8	676.2542383	400.9682638	676.4722721	391.0659467	M7	-0.071428571	1.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.17	278	0	0	NA	6qB1	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.774917634	sgMsh2	cell line
chr5	142885825	142885825	T	A	ENSMUST00000035985.7	1	ENSMUSG00000066640	missense	M/L	488	Fbxl18	ENSMUST00000035985.7:c.1462A>T	ENSMUSP00000041700.7:p.Met488Leu	H-2-Kb	9	3	9	IGSNFSSAL	IGSNFSSAM	NetMHC	58.29	157.17	2.696	77	0.039	373.696	558.53	1.495	157.17	58.29	296.5	123.5	820.5593529	623.8928378	902.0902731	665.6562285	M7	0.357142857	0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.054	77	18	1	0.055555556	5qG2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.246150307	sgMsh2	cell line
chr6	18226001	18226001	T	C	ENSMUST00000045706.11	1	ENSMUSG00000041301	missense	F/S	316	Cftr	ENSMUST00000045706.11:c.947T>C	ENSMUSP00000049228.5:p.Phe316Ser	H-2-Kb	9	10	2	FSVVFLSVL	FFVVFLSVL	NetMHC	69.25	470.62	6.796	166	0.223	164.327	422.904	2.574	470.62	69.25	2472.5	174.8	284.5181656	153.854428	375.1889162	186.7454375	M7	3.171428571	3.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	166	8	0	0	6qA2	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr6	40612821	40612821	CA	C	ENSMUST00000076565.2	NA	ENSMUSG00000058250	FS	C/X	164	Tas2r138	ENSMUST00000076565.2:c.490del	ENSMUSP00000075876.2:p.Cys164AlafsTer13	H-2-Kb	9	5	7	CLWDFFADL	CLWDFFCRS	NetMHC	103.62	3815.78	36.825	117	0.205	231.884	2401.986	10.359	3815.78	103.62	3432.3	158.1	783.6280984	327.4236157	1371.671136	305.6680173	M7	0.471428571	1.328571429	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.211	117	0	0	NA	6qB1	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.961809534	sgMsh2	cell line
chr5	142472335	142472335	A	C	ENSMUST00000038699.12	1	ENSMUSG00000039623	missense	D/A	421	Ap5z1	ENSMUST00000038699.12:c.1262A>C	ENSMUSP00000041863.8:p.Asp421Ala	H-2-Kb	9	10	2	FASHFLSLL	FDSHFLSLL	NetMHC	190.64	4486.45	23.534	92	0.261	246.595	2634.748	10.685	4486.45	190.64	3910.4	200.7	1294.523683	292.4893114	1359.09558	371.7491635	M7	1.342857143	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.275	92	23	2	0.086956522	5qG2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	9	4	8	VLVSYTRLL	VLVSYTRIL	NetMHCpan	118.1	254.3	2.153	156	0.16	338.726	712.479	2.103	683.46	204.18	254.3	118.1	741.4980274	473.271116	959.9530659	622.6586131	M7	0.642857143	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.165	156	0	0	NA	6qB2.1	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.752125939	sgMsh2	cell line
chr6	18282507	18282507	T	A	ENSMUST00000045706.11	1	ENSMUSG00000041301	missense	F/I	1069	Cftr	ENSMUST00000045706.11:c.3205T>A	ENSMUSP00000049228.5:p.Phe1069Ile	H-2-Kb	9	3	9	RAFRRQTYI	RAFRRQTYF	NetMHCpan	149	131.2	0.881	161	0.155	343.782	287.14	0.835	233	215.23	131.2	149	341.2793414	502.4698412	353.3865369	472.3348608	M7	-1.028571429	-1.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.157	161	2	0	0	6qA2	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.715659227	sgMsh2	cell line
chr6	4756881	4756881	A	G	ENSMUST00000166678.1	5	ENSMUSG00000092035	missense	T/A	887	Peg10	ENSMUST00000166678.1:c.2659A>G	ENSMUSP00000127306.1:p.Thr887Ala	H-2-Kb	9	10	2	VAYNCRAPQ	VTYNCRAPQ	SMMPMBEC	155.686	201.025	1.291	94	0.191	256.873	337.294	1.313	416.89	326.63	3547.1	2769.3	257.6973782	187.1156015	201.0249672	155.6861575	M7	-1.442857143	0.142857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.202	94	19	8	0.421052632	6qA1	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.920784483	sgMsh2	cell line
chr6	23969343	23969343	A	G	ENSMUST00000062463.3	NA	ENSMUSG00000043865	missense	S/P	240	Tas2r118	ENSMUST00000062463.3:c.718T>C	ENSMUSP00000053700.3:p.Ser240Pro	H-2-Kb	9	4	8	TFFTFFTPY	TFFTFFTSY	SMM	58.359	101.651	1.742	220	0.177	196.971	288.699	1.466	465.39	328.44	714.6	450.5	101.6506125	58.35929005	112.0082469	65.50131214	M7	0.585714286	1.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.172	220	0	0	NA	6qA3.1	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.784034312	sgMsh2	cell line
chr5	142472335	142472335	A	C	ENSMUST00000038699.12	1	ENSMUSG00000039623	missense	D/A	421	Ap5z1	ENSMUST00000038699.12:c.1262A>C	ENSMUSP00000041863.8:p.Asp421Ala	H-2-Kb	9	9	3	LFASHFLSL	LFDSHFLSL	SMM	203.756	388.249	1.905	92	0.261	276.613	632.632	2.287	825.47	341.07	1414.4	280.8	388.2486909	203.7558094	439.7947088	272.4269072	M7	1.057142857	1.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.275	92	23	2	0.086956522	5qG2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr6	38818458	38818458	T	C	ENSMUST00000161779.7	1	ENSMUSG00000061436	missense	K/R	292	Hipk2	ENSMUST00000161779.7:c.875A>G	ENSMUSP00000124133.1:p.Lys292Arg	H-2-Kb	9	7	5	LKQNRFSPL	LKQNKFSPL	NetMHC	346.05	529.23	1.529	203	0.158	459.514	702.894	1.53	529.23	346.05	2230.7	1526.9	755.2835049	504.7891366	650.5040428	414.2380608	M7	-1.042857143	-1.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.16	203	42	10	0.238095238	6qB1	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.729334244	sgMsh2	cell line
chr6	57137842	57137842	T	C	ENSMUST00000226968.1	NA	ENSMUSG00000115236	missense	S/P	164	Vmn1r11	ENSMUST00000226968.1:c.490T>C	ENSMUSP00000154588.1:p.Ser164Pro	H-2-Kb	9	4	8	MKVTKYCPL	MKVTKYCSL	NetMHC	349.34	637.1	1.824	287	0.021	399.47	689.835	1.727	637.1	349.34	1672.2	965	738.0911534	423.7502818	641.5787927	375.1889162	M7	0.428571429	0.428571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.027	287	0	0	NA	6qB3	chr6-56956255-70723407	4	2	2	0.9	4.102505121	NA	1	0.123075154	sgMsh2	cell line
chr6	27363252	27363252	A	G	ENSMUST00000115323.7	1	ENSMUSG00000024211	missense	Y/H	755	Grm8	ENSMUST00000115323.7:c.2263T>C	ENSMUSP00000110978.1:p.Tyr755His	H-2-Kb	9	7	5	CSLGHSILL	CSLGYSILL	SMM	204.696	164.101	0.802	166	0.223	364.907	235.996	0.647	182.09	365.69	295.7	809.6	164.1005362	204.6963035	289.9011913	364.1245828	M7	1.642857143	1.642857143	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.244	166	0	0	NA	6qA3.1	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	9	6	6	VSYTRLLVA	VSYTRILVA	NetMHCpan	129.9	163.6	1.259	156	0.16	176.155	270.535	1.536	712.71	415.25	163.6	129.9	323.6756285	203.287184	217.3952246	149.021867	M7	1.014285714	1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.165	156	0	0	NA	6qB2.1	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.752125939	sgMsh2	cell line
chr6	43081545	43081545	T	C	ENSMUST00000103301.2	5	ENSMUSG00000076500	missense	Y/C	111	Gm20730	ENSMUST00000103301.2:c.332A>G	ENSMUSP00000100102.2:p.Tyr111Cys	H-2-Kb	9	10	4	GVYCCMQGL	GVYYCMQGL	SMMPMBEC	365.805	291.239	0.796	179	0.156	418.949	282.418	0.674	199.71	459.36	459.7	713.4	273.5961615	378.5384504	291.2393144	365.8053055	M7	0.785714286	0.842857143	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.147	179	0	0	NA	6qB2.1	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.670075836	sgMsh2	cell line
chr6	18226001	18226001	T	C	ENSMUST00000045706.11	1	ENSMUSG00000041301	missense	F/S	316	Cftr	ENSMUST00000045706.11:c.947T>C	ENSMUSP00000049228.5:p.Phe316Ser	H-2-Kb	9	3	9	SAFFFSGFS	SAFFFSGFF	SMM	220.348	98.653	0.448	166	0.223	374.122	74.546	0.199	50.44	768.26	30.6	322.4	98.65293264	220.3484501	133.428929	425.8434778	M7	1.314285714	1.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	166	8	0	0	6qA2	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr6	7863979	7863979	GT	G	ENSMUST00000040159.5	1	ENSMUSG00000042460	FS	F/X	20	C1galt1	ENSMUST00000040159.5:c.65del	ENSMUSP00000047931.4:p.Leu22TyrfsTer6	H-2-Kb	9	9	5	IGFFYVLNS	NA	NetMHCpan	145.4	NA	NA	99	0.162	455.994	NA	NA	NA	1161.5	NA	145.4	NA	439.6529586	NA	472.3348608	M7	1.142857143	2.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1616	99	81	6	0.074074074	6qA1	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.736627586	sgMsh2	cell line
chr6	8013113	8013113	AT	A	ENSMUST00000115537.1	1	ENSMUSG00000068794	FS	I/X	980	Col28a1	ENSMUST00000115537.1:c.2938del	ENSMUSP00000111199.1:p.Ile980PhefsTer59	H-2-Kb	10	18	0	ISFKFLDHHL	NA	NetMHCpan	12.2	NA	NA	90	0.144	327.464	NA	NA	NA	22.72	NA	12.2	NA	919.0306595	NA	632.2080187	M7	-0.485714286	0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.15	90	0	0	NA	6qA1	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.683750854	sgMsh2	cell line
chr6	18226001	18226001	T	C	ENSMUST00000045706.11	1	ENSMUSG00000041301	missense	F/S	316	Cftr	ENSMUST00000045706.11:c.947T>C	ENSMUSP00000049228.5:p.Phe316Ser	H-2-Kb	10	3	9	SAFFFSGFSV	SAFFFSGFFV	NetMHCpan	115.9	223.7	1.93	166	0.223	343.911	357.521	1.04	308.73	197.67	223.7	115.9	476.7931419	490.1511207	406.3123284	553.171759	M7	1.514285714	1.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	166	8	0	0	6qA2	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr6	104774496	104774496	T	C	ENSMUST00000089215.11	1	ENSMUSG00000030092	missense	L/P	371	Cntn6	ENSMUST00000089215.11:c.1112T>C	ENSMUSP00000086623.5:p.Leu371Pro	H-2-Db	9	4	8	IQIENGTPI	IQIENGTLI	NetMHC	4.12	13.26	3.218	223	0.224	15.98	51.13	3.2	13.26	4.12	31.2	9.9	71.05914866	22.06073613	85.81634232	25.85651564	M7	-0.1	-0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.218	223	0	0	NA	6qE1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.993717907	sgMsh2	cell line
chr6	122850369	122850369	TA	T	ENSMUST00000042081.8	1	ENSMUSG00000040552	FS	P/X	296	C3ar1	ENSMUST00000042081.8:c.888del	ENSMUSP00000048092.8:p.Thr297LeufsTer30	H-2-Db	9	4	9	SAHTELFPL	SAHTELFPT	NetMHCpan	218.3	4631	21.214	226	0.168	409.612	4501.197	10.989	10902.8	576.21	4631	218.3	4371.394485	424.2481918	2802.65732	394.9753567	M7	0.2	0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.171	226	7	0	0	6qF2	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.779475973	sgMsh2	cell line
chr6	122850369	122850369	TA	T	ENSMUST00000042081.8	1	ENSMUSG00000040552	FS	P/X	296	C3ar1	ENSMUST00000042081.8:c.888del	ENSMUSP00000048092.8:p.Thr297LeufsTer30	H-2-Db	10	26	0	IMLTNSRMTI	NA	NetMHC	60.3	NA	NA	226	0.168	487.762	NA	NA	NA	60.3	NA	280.1	NA	695.4245209	NA	814.0854636	M7	-0.542857143	0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.171	226	7	0	0	6qF2	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.779475973	sgMsh2	cell line
chr6	114307727	114307727	A	G	ENSMUST00000032454.7	1	ENSMUSG00000030310	missense	I/V	249	Slc6a1	ENSMUST00000032454.7:c.745A>G	ENSMUSP00000032454.5:p.Ile249Val	H-2-Kb	8	6	6	ATYPYVML	ATYPYIML	NetMHC	5.02	5.17	1.03	103	0.233	9.237	10.262	1.111	5.17	5.02	8	7	12.52391179	11.4746646	16.0597951	13.82738324	M7	0.714285714	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.24	103	0	0	NA	6qE3	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr6	122580767	122580767	AG	A	ENSMUST00000112586.7	1	ENSMUSG00000040613	FS	P/X	161	Apobec1	ENSMUST00000112586.7:c.482del	ENSMUSP00000108205.1:p.Pro161LeufsTer15	H-2-Kb	8	4	8	RNFVNYPL	RNFVNYPP	NetMHC	39.56	4956.24	125.284	180	0.139	63.522	2622.344	41.282	4956.24	39.56	2981.4	40.2	2102.519343	86.84403626	2263.288934	87.24489012	M7	0.128571429	0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.149	180	0	0	NA	6qF1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.679192515	sgMsh2	cell line
chr6	115820092	115820092	T	C	ENSMUST00000184428.5	5	ENSMUSG00000030321	missense	Q/R	367	Efcab12	ENSMUST00000184428.5:c.1100A>G	ENSMUSP00000139144.1:p.Gln367Arg	H-2-Kb	8	7	5	STYKRWSL	STYKQWSL	NetMHCpan	36.8	64.5	1.753	40	0.2	108.936	117.926	1.083	176.03	48.93	64.5	36.8	90.7277206	168.9429215	145.1242539	177.3127641	M7	-1.185714286	-1.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.216	40	1	0	0	6qE3	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.984601229	sgMsh2	cell line
chr6	87811390	87811390	T	C	ENSMUST00000078647.10	1	ENSMUSG00000030055	missense	D/G	52	Rab43	ENSMUST00000078647.10:c.155A>G	ENSMUSP00000077716.4:p.Asp52Gly	H-2-Kb	8	10	2	VGFTMKTL	VDFTMKTL	NetMHCpan	54.1	1440.2	26.621	28	0.214	69.49	887.098	12.766	3188.94	63.69	1440.2	54.1	333.9950266	81.23440428	307.4255792	75.29046857	M7	0.4	0.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.233	28	11	2	0.181818182	6qD1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr6	122850369	122850369	TA	T	ENSMUST00000042081.8	1	ENSMUSG00000040552	FS	P/X	296	C3ar1	ENSMUST00000042081.8:c.888del	ENSMUSP00000048092.8:p.Thr297LeufsTer30	H-2-Kb	8	14	0	LVVIYTPM	NA	NetMHCpan	73	NA	NA	226	0.168	177.665	NA	NA	NA	100.8	NA	73	NA	344.9371732	NA	254.5305993	M7	1.6	1.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.171	226	7	0	0	6qF2	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.779475973	sgMsh2	cell line
chr6	69648981	69648981	TG	T	ENSMUST00000198328.1	NA	ENSMUSG00000095753	FS	P/X	67	Igkv4-53	ENSMUST00000198328.1:c.201del	ENSMUSP00000143120.1:p.Lys68AsnfsTer?	H-2-Kb	8	30	0	VAVDLGPL	NA	NetMHC	195.68	NA	NA	391	0.153	249.541	NA	NA	NA	195.68	NA	227.6	NA	271.4813499	NA	281.6696149	M7	1.157142857	1.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.164	391	0	0	NA	6qC1	chr6-56956255-70723407	4	2	2	0.9	4.102505121	NA	1	0.7475676	sgMsh2	cell line
chr6	114307727	114307727	A	G	ENSMUST00000032454.7	1	ENSMUSG00000030310	missense	I/V	249	Slc6a1	ENSMUST00000032454.7:c.745A>G	ENSMUSP00000032454.5:p.Ile249Val	H-2-Kb	8	4	8	FSATYPYV	FSATYPYI	SMM	197.124	357.882	1.816	103	0.233	271.38	390.636	1.439	523.39	275.62	209.4	288.1	357.8821189	197.1242255	423.3894187	267.1406633	M7	0.042857143	0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.24	103	0	0	NA	6qE3	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr6	111358962	111358962	G	T	ENSMUST00000071076.12	5	ENSMUSG00000056755	missense	R/L	778	Grm7	ENSMUST00000071076.12:c.2333G>T	ENSMUSP00000064404.6:p.Arg778Leu	H-2-Kb	8	4	8	TVYAIKTL	TVYAIKTR	NetMHCpan	88.6	14145.4	159.655	148	0.209	373.746	12876.467	34.452	21757.77	380.43	14145.4	88.6	11110.66364	497.4391928	11607.53495	367.0624846	M7	1.2	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.204	148	0	0	NA	6qE3	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.929901161	sgMsh2	cell line
chr6	70355899	70355899	T	C	ENSMUST00000103390.2	NA	ENSMUSG00000076589	missense	L/P	8	Igkv8-18	ENSMUST00000103390.2:c.23T>C	ENSMUSP00000100191.1:p.Leu8Pro	H-2-Kb	8	6	3	HVPMFLLL	HVLMFLLL	NetMHCpan	204.4	177.7	0.869	345	0.168	428.322	219.201	0.512	291.35	397.72	177.7	204.4	259.8603386	609.1720937	178.5418375	458.9231861	M7	2.671428571	2.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.173	345	0	0	NA	6qC1	chr6-56956255-70723407	4	2	2	0.9	4.102505121	NA	1	0.788592651	sgMsh2	cell line
chr6	69648981	69648981	TG	T	ENSMUST00000198328.1	NA	ENSMUSG00000095753	FS	P/X	67	Igkv4-53	ENSMUST00000198328.1:c.201del	ENSMUSP00000143120.1:p.Lys68AsnfsTer?	H-2-Kb	8	43	0	AAWRLKML	NA	NetMHCpan	298.4	NA	NA	391	0.153	404.93	NA	NA	NA	398.01	NA	298.4	NA	545.4312289	NA	411.8508816	M7	0.285714286	0.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.164	391	0	0	NA	6qC1	chr6-56956255-70723407	4	2	2	0.9	4.102505121	NA	1	0.7475676	sgMsh2	cell line
chr6	102204002	102204002	C	T	ENSMUST00000203619.2	1	ENSMUSG00000030075	missense	G/E	744	Cntn3	ENSMUST00000203619.2:c.2231G>A	ENSMUSP00000145176.1:p.Gly744Glu	H-2-Kb	8	5	7	VAFRPLEV	VAFRPLGV	NetMHCpan	331.7	165.3	0.498	125	0.224	496.208	207.208	0.418	171.9	450.74	165.3	331.7	242.5157786	541.6765067	303.2075422	694.6083504	M7	0.428571429	0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.205	125	0	0	NA	6qD3	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.9344595	sgMsh2	cell line
chr6	68542226	68542226	A	G	ENSMUST00000168090.2	NA	ENSMUSG00000076525	missense	T/A	56	Igkv1-99	ENSMUST00000168090.2:c.166A>G	ENSMUSP00000132003.2:p.Thr56Ala	H-2-Kb	8	10	2	FAYLDWYL	FTYLDWYL	SMM	273.993	177.313	0.647	176	0.239	330.847	330.75	1	1700.12	1534.67	478.8	372.8	177.3127641	273.9933359	182.7006111	288.8949831	M7	0.342857143	0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.237	176	0	0	NA	6qC1	chr6-56956255-70723407	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr6	114307727	114307727	A	G	ENSMUST00000032454.7	1	ENSMUSG00000030310	missense	I/V	249	Slc6a1	ENSMUST00000032454.7:c.745A>G	ENSMUSP00000032454.5:p.Ile249Val	H-2-Kb	9	6	6	ATYPYVMLI	ATYPYIMLI	NetMHCpan	35.3	35.3	1	103	0.233	152.513	134.118	0.879	51.91	44.26	35.3	35.3	216.3266376	264.9171047	222.4590099	260.7654204	M7	1.457142857	1.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.24	103	0	0	NA	6qE3	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr6	122580767	122580767	AG	A	ENSMUST00000112586.7	1	ENSMUSG00000040613	FS	P/X	161	Apobec1	ENSMUST00000112586.7:c.482del	ENSMUSP00000108205.1:p.Pro161LeufsTer15	H-2-Kb	9	7	5	VNYPLQTKL	NA	NetMHCpan	21.6	NA	NA	180	0.139	76.549	NA	NA	NA	53.73	NA	21.6	NA	104.7393803	NA	99.36878965	M7	-0.485714286	-0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.149	180	0	0	NA	6qF1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.679192515	sgMsh2	cell line
chr6	114314446	114314446	A	C	ENSMUST00000032454.7	1	ENSMUSG00000030310	missense	K/T	560	Slc6a1	ENSMUST00000032454.7:c.1679A>C	ENSMUSP00000032454.5:p.Lys560Thr	H-2-Kb	9	3	9	MAYMFLTLT	MAYMFLTLK	NetMHC	87.78	855.63	9.747	42	0.214	110.794	620.695	5.602	855.63	87.78	854.8	109.1	353.2726369	112.4889855	386.5894518	127.4236379	M7	1.371428571	1.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	42	0	0	NA	6qE3	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr6	83192825	83192825	A	G	ENSMUST00000113919.9	1	ENSMUSG00000031865	missense	I/V	703	Dctn1	ENSMUST00000113919.9:c.2107A>G	ENSMUSP00000109552.3:p.Ile703Val	H-2-Kb	9	5	7	RSLDFLVEL	RSLDFLIEL	NetMHCpan	90.8	105.7	1.164	81	0.148	171.541	175.052	1.02	98.19	93.56	105.7	90.8	244.4049514	249.5226649	298.7101638	270.5515336	M7	1.628571429	1.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.141	81	164	32	0.195121951	6qC3	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.642725802	sgMsh2	cell line
chr6	115820092	115820092	T	C	ENSMUST00000184428.5	5	ENSMUSG00000030321	missense	Q/R	367	Efcab12	ENSMUST00000184428.5:c.1100A>G	ENSMUSP00000139144.1:p.Gln367Arg	H-2-Kb	9	7	5	STYKRWSLA	STYKQWSLA	NetMHC	101.01	364.75	3.611	40	0.2	165.063	546.457	3.311	364.75	101.01	591.9	173	523.7330732	173.4243199	569.1804832	157.1267038	M7	-0.828571429	-0.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.216	40	1	0	0	6qE3	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.984601229	sgMsh2	cell line
chr6	114307727	114307727	A	G	ENSMUST00000032454.7	1	ENSMUSG00000030310	missense	I/V	249	Slc6a1	ENSMUST00000032454.7:c.745A>G	ENSMUSP00000032454.5:p.Ile249Val	H-2-Kb	9	5	7	SATYPYVML	SATYPYIML	NetMHC	145.84	148.94	1.021	103	0.233	299.561	314.537	1.05	148.94	145.84	409.6	363.1	254.7475407	260.0818226	374.3260056	339.0392667	M7	0.714285714	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.24	103	0	0	NA	6qE3	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr6	69648981	69648981	TG	T	ENSMUST00000198328.1	NA	ENSMUSG00000095753	FS	P/X	67	Igkv4-53	ENSMUST00000198328.1:c.201del	ENSMUSP00000143120.1:p.Lys68AsnfsTer?	H-2-Kb	9	44	0	AWRLKMLPL	NA	SMM	170.259	NA	NA	391	0.153	220.515	NA	NA	NA	202.66	NA	1334.9	NA	170.2589693	NA	238.3691237	M7	0.471428571	0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.164	391	0	0	NA	6qC1	chr6-56956255-70723407	4	2	2	0.9	4.102505121	NA	1	0.7475676	sgMsh2	cell line
chr6	108399280	108399280	C	T	ENSMUST00000032192.8	1	ENSMUSG00000030102	missense	R/W	1235	Itpr1	ENSMUST00000032192.8:c.3703C>T	ENSMUSP00000032192.6:p.Arg1235Trp	H-2-Kb	9	9	3	IMWLAHEFL	IMRLAHEFL	NetMHCpan	173.3	364.8	2.105	92	0.228	275.443	622.207	2.259	738.74	227.21	364.8	173.3	566.3827268	323.6756285	678.0317017	326.7758854	M7	0.657142857	0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.219	92	12	4	0.333333333	6qE1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.998276246	sgMsh2	cell line
chr6	78376435	78376435	G	A	ENSMUST00000089667.7	1	ENSMUSG00000068341	missense	H/Y	142	Reg3d	ENSMUST00000089667.7:c.424C>T	ENSMUSP00000087096.1:p.His142Tyr	H-2-Kb	9	10	2	AYHGYCAAL	AHHGYCAAL	NetMHC	233.75	211.3	0.904	114	0.123	376.342	460.876	1.225	211.3	233.75	464.4	454.2	563.7804345	406.5462879	457.3513865	346.1385739	M7	0.714285714	0.714285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.141	114	0	0	NA	6qC3	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.642725802	sgMsh2	cell line
chr6	57360638	57360638	T	C	ENSMUST00000227186.1	NA	ENSMUSG00000115644	missense	I/M	247	Vmn1r17	ENSMUST00000227186.1:c.741A>G	ENSMUSP00000154334.1:p.Ile247Met	H-2-Kb	9	3	9	VMYWVDFIM	VMYWVDFII	SMM	115.641	218.328	1.888	299	0.194	275.792	430.03	1.559	602.28	400.49	1029	521.4	218.3282833	115.6405104	257.7804634	151.0949676	M7	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.199	299	0	0	NA	6qB3	chr6-56956255-70723407	4	2	2	0.9	4.102505121	NA	1	0.907109466	sgMsh2	cell line
chr6	122850369	122850369	TA	T	ENSMUST00000042081.8	1	ENSMUSG00000040552	FS	P/X	296	C3ar1	ENSMUST00000042081.8:c.888del	ENSMUSP00000048092.8:p.Thr297LeufsTer30	H-2-Kb	9	4	9	SAHTELFPL	SAHTELFPT	NetMHCpan	438.2	6282	14.336	226	0.168	442.376	4341.538	9.814	5757.24	443.07	6282	438.2	2553.347944	441.6823044	2925.83614	582.4383998	M7	0.2	0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.171	226	7	0	0	6qF2	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.779475973	sgMsh2	cell line
chr6	69648981	69648981	TG	T	ENSMUST00000198328.1	NA	ENSMUSG00000095753	FS	P/X	67	Igkv4-53	ENSMUST00000198328.1:c.201del	ENSMUSP00000143120.1:p.Lys68AsnfsTer?	H-2-Kb	9	42	0	SAAWRLKML	NA	SMM	294.517	NA	NA	391	0.153	402.388	NA	NA	NA	472.69	NA	862.6	NA	294.5167504	NA	332.0855664	M7	0.285714286	0.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.164	391	0	0	NA	6qC1	chr6-56956255-70723407	4	2	2	0.9	4.102505121	NA	1	0.7475676	sgMsh2	cell line
chr6	70355899	70355899	T	C	ENSMUST00000103390.2	NA	ENSMUSG00000076589	missense	L/P	8	Igkv8-18	ENSMUST00000103390.2:c.23T>C	ENSMUSP00000100191.1:p.Leu8Pro	H-2-Kb	9	5	4	THVPMFLLL	THVLMFLLL	NetMHCpan	259.7	349.3	1.345	345	0.168	445.938	313.396	0.703	477.99	647.98	349.3	259.7	259.483651	436.6264089	277.4917016	455.2500477	M7	2.671428571	2.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.173	345	0	0	NA	6qC1	chr6-56956255-70723407	4	2	2	0.9	4.102505121	NA	1	0.788592651	sgMsh2	cell line
chr6	78376435	78376435	G	A	ENSMUST00000089667.7	1	ENSMUSG00000068341	missense	H/Y	142	Reg3d	ENSMUST00000089667.7:c.424C>T	ENSMUSP00000087096.1:p.His142Tyr	H-2-Kb	10	9	3	SAYHGYCAAL	SAHHGYCAAL	NetMHC	16.5	239.43	14.511	114	0.123	357.454	1524.234	4.264	239.43	16.5	388.6	23.3	2973.924919	793.1037439	2659.867482	691.6079869	M7	0.714285714	0.714285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.141	114	0	0	NA	6qC3	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.642725802	sgMsh2	cell line
chr6	142003500	142003500	A	G	ENSMUST00000181791.7	5	ENSMUSG00000079263	missense	L/P	50	Gm6614	ENSMUST00000181791.7:c.149T>C	ENSMUSP00000137696.1:p.Leu50Pro	H-2-Db	9	6	6	FGIGNPLLI	FGIGNLLLI	NetMHCpan	55.6	40	0.719	148	0.196	115.692	74.539	0.644	51.9	85.31	40	55.6	109.8044649	159.8159056	97.17845721	146.0730172	M7	1.585714286	1.585714286	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.204	148	0	0	NA	6qG2	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.929901161	sgMsh2	cell line
chr6	125024219	125024219	A	G	ENSMUST00000112427.7	5	ENSMUSG00000038346	missense	T/A	85	Zfp384	ENSMUST00000112427.7:c.253A>G	ENSMUSP00000108046.1:p.Thr85Ala	H-2-Db	9	9	3	SVAQNITVV	SVTQNITVV	NetMHC	131.61	172.76	1.313	100	0.15	428.38	485.493	1.133	172.76	131.61	321.5	189	649.5610871	667.7593842	649.486308	738.8733457	M7	1	1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.164	100	73	12	0.164383562	6qF2	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.7475676	sgMsh2	cell line
chr7	25272796	25272796	A	G	ENSMUST00000169266.7	1	ENSMUSG00000005442	missense	I/V	651	Cic	ENSMUST00000169266.7:c.1951A>G	ENSMUSP00000132351.1:p.Ile651Val	H-2-Db	10	2	10	FSPINASPVV	FSPINASPVI	NetMHC	14.9	8.41	0.564	59	0.254	465.206	229.143	0.493	8.41	14.9	34.4	92.4	423.8869047	838.0115415	542.8376978	1013.141255	M7	1.257142857	1.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.26	59	42	10	0.238095238	7qA3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr7	5410476	5410476	T	C	ENSMUST00000108569.3	1	ENSMUSG00000078808	missense	I/V	252	Vmn1r58	ENSMUST00000108569.3:c.754A>G	ENSMUSP00000104209.2:p.Ile252Val	H-2-Kb	8	11	1	VSFVESRL	ISFVESRL	SMMPMBEC	11.634	11.343	0.975	219	0.237	14.49	14.995	1.035	14.39	13.68	15.6	15.3	17.32766328	16.24575876	11.3433152	11.63429308	M7	0.171428571	0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.232	219	0	0	NA	7qA1	chr7-3896664-7472715	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr6	133036200	133036200	C	A	ENSMUST00000032317.3	NA	ENSMUSG00000030196	missense	R/M	301	Tas2r103	ENSMUST00000032317.3:c.902G>T	ENSMUSP00000032317.3:p.Arg301Met	H-2-Kb	8	10	2	LMYKYKHI	LRYKYKHI	NetMHC	22.46	837.26	37.278	99	0.202	81.621	874.363	10.713	837.26	22.46	1435.1	32.1	911.4650073	193.5263029	610.5763804	131.1414557	M7	-1.028571429	-1.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.198	99	0	0	NA	6qG1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.902551127	sgMsh2	cell line
chr6	142089812	142089812	A	C	ENSMUST00000111827.3	1	ENSMUSG00000079262	missense	S/R	595	Slco1a6	ENSMUST00000111827.3:c.1785T>G	ENSMUSP00000107458.3:p.Ser595Arg	H-2-Kb	8	11	1	RSFRRLYL	SSFRRLYL	NetMHCpan	28.9	12.6	0.436	138	0.138	60.546	28.672	0.474	11.45	32.43	12.6	28.9	45.57639811	96.10367602	44.74453509	88.66250554	M7	-0.1	-0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.147	138	0	0	NA	6qG2	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.670075836	sgMsh2	cell line
chr7	18681013	18681013	A	G	ENSMUST00000076677.3	5	ENSMUSG00000063305	missense	I/T	319	Psg20	ENSMUST00000076677.3:c.956T>C	ENSMUSP00000075973.3:p.Ile319Thr	H-2-Kb	8	5	7	STPYFRTV	STPYFRIV	NetMHC	39.77	154.5	3.885	341	0.232	151.333	360.148	2.38	154.5	39.77	249.6	97.2	470.6954498	205.466016	680.361923	260.4593785	M7	-0.257142857	-0.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.233	341	0	0	NA	7qA3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr7	23321572	23321572	A	AT	ENSMUST00000076470.4	1	ENSMUSG00000045693	FS	I/IX	495	Nlrp4e	ENSMUST00000076470.4:c.1491dup	ENSMUSP00000075794.3:p.Gly498TrpfsTer10	H-2-Kb	8	11	4	IFFWLFHL	IFFGSFIF	SMM	17.051	4642.373	272.27	539	0.104	30.924	2862.886	92.578	1053.94	42.54	1083.4	67.6	4642.372661	17.05061311	5232.870654	19.30812048	M7	1.7	1.8	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1039	539	0	0	NA	7qA3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.473611425	sgMsh2	cell line
chr7	10447657	10447657	T	C	ENSMUST00000055964.7	NA	ENSMUSG00000046716	missense	F/L	283	Vmn1r67	ENSMUST00000055964.7:c.847T>C	ENSMUSP00000060746.4:p.Phe283Leu	H-2-Kb	8	4	8	CFPSFGPL	CFPSFGPF	NetMHC	77.53	1043.11	13.454	155	0.213	99.403	1165.294	11.723	1043.11	77.53	884.7	250.5	1287.478543	79.2027024	1502.242346	119.6024291	M7	0.714285714	0.714285714	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.23	155	0	0	NA	7qA1	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr6	149044772	149044772	A	G	ENSMUST00000111557.7	5	ENSMUSG00000030313	missense	L/P	447	Dennd5b	ENSMUST00000111557.7:c.1340T>C	ENSMUSP00000107182.1:p.Leu447Pro	H-2-Kb	8	5	7	SVSVYEPL	SVSVYELL	NetMHC	78.51	330.01	4.203	120	0.2	157.92	448.607	2.841	330.01	78.51	276.9	109.9	576.4212727	217.6406428	567.204934	205.9396641	M7	0.714285714	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.205	120	24	5	0.208333333	6qG3	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	sgMsh2	cell line
chr7	23321572	23321572	A	AT	ENSMUST00000076470.4	1	ENSMUSG00000045693	FS	I/IX	495	Nlrp4e	ENSMUST00000076470.4:c.1491dup	ENSMUSP00000075794.3:p.Gly498TrpfsTer10	H-2-Kb	8	8	7	IQWIFFWL	IQWIFFGS	SMMPMBEC	26.591	204.993	7.709	539	0.104	82.528	1122.497	13.601	2252.47	133.67	2040	567.7	186.956255	31.38629122	204.9934573	26.59132635	M7	1.228571429	1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1039	539	0	0	NA	7qA3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.473611425	sgMsh2	cell line
chr6	124039164	124039164	A	C	ENSMUST00000032238.4	1	ENSMUSG00000096630	missense	M/L	196	Vmn2r26	ENSMUST00000032238.4:c.586A>C	ENSMUSP00000032238.3:p.Met196Leu	H-2-Kb	8	9	3	FSLHTAAL	FSMHTAAL	SMMPMBEC	137.956	181.861	1.318	345	0.183	181.639	226.185	1.245	236.87	213.4	215.5	305.7	257.4779247	149.8787285	181.861178	137.9558114	M7	0.928571429	0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.185	345	0	0	NA	6qF2	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.843292719	sgMsh2	cell line
chr7	5031599	5031599	T	C	ENSMUST00000076251.6	1	ENSMUSG00000074405	missense	L/P	861	Zfp865	ENSMUST00000076251.6:c.2582T>C	ENSMUSP00000075601.4:p.Leu861Pro	H-2-Kb	8	5	7	RFWEAAPL	RFWEAALL	SMM	128.748	340.989	2.649	25	0.4	206.406	473.858	2.296	783.56	274.22	566	396.5	340.9887101	128.7478543	381.7156799	138.5925865	M7	0.6	0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.44	25	8	0	0	7qA1	chr7-3896664-7472715	4	2	2	0.9	4.102505121	NA	2	1	sgMsh2	cell line
chr6	124702305	124702305	A	G	ENSMUST00000004381.13	1	ENSMUSG00000004270	missense	T/A	286	Lpcat3	ENSMUST00000004381.13:c.856A>G	ENSMUSP00000004381.7:p.Thr286Ala	H-2-Kb	8	5	7	VLYKYVAC	VLYKYVTC	SMM	109.079	181.443	1.663	223	0.152	207.544	193.816	0.934	537.41	308.5	197.2	294.1	181.4429089	109.0787117	190.4320313	120.9873599	M7	0.828571429	1.071428571	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.149	223	175	17	0.097142857	6qF2	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.679192515	sgMsh2	cell line
chr7	5075496	5075496	T	C	ENSMUST00000209099.1	1	ENSMUSG00000030435	missense	L/P	358	U2af2	ENSMUST00000209099.1:c.1073T>C	ENSMUSP00000147013.1:p.Leu358Pro	H-2-Kb	8	9	3	VTPQVPGL	VTLQVPGL	SMM	233.744	99.71	0.427	75	0.16	357.713	130.504	0.365	134.9	391.28	180.8	683.6	99.71029474	233.7437461	126.107234	324.1455024	M7	0.028571429	0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.172	75	180	32	0.177777778	7qA1	chr7-3896664-7472715	4	2	2	0.9	4.102505121	NA	1	0.784034312	sgMsh2	cell line
chr6	142089812	142089812	A	C	ENSMUST00000111827.3	1	ENSMUSG00000079262	missense	S/R	595	Slco1a6	ENSMUST00000111827.3:c.1785T>G	ENSMUSP00000107458.3:p.Ser595Arg	H-2-Kb	8	9	3	EVRSFRRL	EVSSFRRL	SMMPMBEC	253.945	816.094	3.214	138	0.138	483.92	1527.593	3.157	2801.92	662.53	1974.4	1653.8	1080.786721	305.3092764	816.0936526	253.9451951	M7	-0.5	-0.5	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.147	138	0	0	NA	6qG2	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.670075836	sgMsh2	cell line
chr7	23541176	23541176	A	G	ENSMUST00000098704.2	NA	ENSMUSG00000074291	missense	I/V	153	Vmn1r168	ENSMUST00000098704.2:c.457A>G	ENSMUSP00000096301.2:p.Ile153Val	H-2-Kb	9	5	7	ILYNVYVPM	ILYNVYIPM	NetMHCpan	31.9	38.5	1.207	373	0.174	84.52	90.886	1.075	75.05	72.38	38.5	31.9	136.8075294	139.6722084	106.721028	96.66071427	M7	0.371428571	1.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.184	373	0	0	NA	7qA3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.83873438	sgMsh2	cell line
chr6	124837668	124837668	T	A	ENSMUST00000024206.5	1	ENSMUSG00000023439	missense	K/M	89	Gnb3	ENSMUST00000024206.5:c.266A>T	ENSMUSP00000024206.5:p.Lys89Met	H-2-Kb	9	9	3	TNMVHAIPL	TNKVHAIPL	NetMHCpan	46.3	608.2	13.136	211	0.147	121.892	535.882	4.396	791.79	85.62	608.2	46.3	463.5643185	158.1648595	425.8434778	178.7516256	M7	1.628571429	1.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.15	211	0	0	NA	6qF2	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.683750854	sgMsh2	cell line
chr7	5410476	5410476	T	C	ENSMUST00000108569.3	1	ENSMUSG00000078808	missense	I/V	252	Vmn1r58	ENSMUST00000108569.3:c.754A>G	ENSMUSP00000104209.2:p.Ile252Val	H-2-Kb	9	5	7	ITILFHVSF	ITILFHISF	NetMHC	88.07	93.98	1.067	219	0.237	134.087	152.688	1.139	93.98	88.07	188.8	133.2	156.3543614	159.628341	149.021867	134.9739632	M7	2.014285714	2.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.232	219	0	0	NA	7qA1	chr7-3896664-7472715	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr7	23321572	23321572	A	AT	ENSMUST00000076470.4	1	ENSMUSG00000045693	FS	I/IX	495	Nlrp4e	ENSMUST00000076470.4:c.1491dup	ENSMUSP00000075794.3:p.Gly498TrpfsTer10	H-2-Kb	9	10	5	WIFFWLFHL	WIFFGSFIF	SMM	100.951	1416.152	14.028	539	0.104	144.54	1882.596	13.025	2116.08	186.22	7399.9	729.1	1416.152424	100.9508546	1649.111423	102.8608242	M7	1.7	2.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1039	539	0	0	NA	7qA3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.473611425	sgMsh2	cell line
chr7	10447657	10447657	T	C	ENSMUST00000055964.7	NA	ENSMUSG00000046716	missense	F/L	283	Vmn1r67	ENSMUST00000055964.7:c.847T>C	ENSMUSP00000060746.4:p.Phe283Leu	H-2-Kb	9	3	9	LCFPSFGPL	LCFPSFGPF	NetMHCpan	115.1	262.7	2.282	155	0.213	225.044	501.051	2.226	746.08	228.14	262.7	115.1	618.1729539	366.5303993	383.9281887	221.9473684	M7	0.714285714	1.3	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.23	155	0	0	NA	7qA1	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr6	124837668	124837668	T	A	ENSMUST00000024206.5	1	ENSMUSG00000023439	missense	K/M	89	Gnb3	ENSMUST00000024206.5:c.266A>T	ENSMUSP00000024206.5:p.Lys89Met	H-2-Kb	9	3	9	VWDTYTTNM	VWDTYTTNK	SMM	229.145	3163.079	13.804	211	0.147	308.787	7373.407	23.879	11332.92	314.01	17062.3	1071.2	3163.078717	229.1447967	3413.893746	303.5638135	M7	-1.214285714	-0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.15	211	0	0	NA	6qF2	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.683750854	sgMsh2	cell line
chr6	134484391	134484391	T	G	ENSMUST00000032322.14	1	ENSMUSG00000030201	missense	E/A	701	Lrp6	ENSMUST00000032322.14:c.2102A>C	ENSMUSP00000032322.8:p.Glu701Ala	H-2-Kb	9	4	8	SALEHVVAF	SALEHVVEF	NetMHC	346.5	552.55	1.595	189	0.143	444.167	549.223	1.237	552.55	346.5	572.2	399.4	545.8961105	515.3591605	539.8212792	488.9337312	M7	1.442857143	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.143	189	96	22	0.229166667	6qG1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.65184248	sgMsh2	cell line
chr7	25761460	25761460	T	C	ENSMUST00000002677.10	1	ENSMUSG00000002602	missense	K/R	708	Axl	ENSMUST00000002677.10:c.2123A>G	ENSMUSP00000002677.4:p.Lys708Arg	H-2-Kb	9	7	5	KMPVRWIAI	KMPVKWIAI	NetMHC	351.78	378.59	1.076	108	0.204	387.454	595.076	1.536	378.59	351.78	864.2	468.7	539.6472894	360.6699835	650.5040428	414.2380608	M7	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.206	108	1009	232	0.229930624	7qA3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.939017839	sgMsh2	cell line
chr7	7563747	7563747	GT	G	ENSMUST00000165921.1	5	ENSMUSG00000096691	FS	N/X	122	Vmn2r33	ENSMUST00000165921.1:c.365del	ENSMUSP00000129960.1:p.Asn122ThrfsTer29	H-2-Kb	9	26	0	VHFFLQDPI	NA	NetMHCpan	319.5	NA	NA	134	0.052	458.794	NA	NA	NA	424.13	NA	319.5	NA	563.7804345	NA	493.4577793	M7	0.757142857	0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0522	134	0	0	NA	7qA1	chr7-7473826-9985088	2.44020085	1.44020085	1	0.9	4.102505121	NA	1	0.237945297	sgMsh2	cell line
chr6	127146068	127146068	G	T	ENSMUST00000000188.11	1	ENSMUSG00000000184	missense	L/M	175	Ccnd2	ENSMUST00000000188.11:c.523C>A	ENSMUSP00000000188.8:p.Leu175Met	H-2-Kb	9	10	2	SMIRKHAQT	SLIRKHAQT	SMMPMBEC	369.19	2209.276	5.984	96	0.208	493.24	4167.215	8.449	4047.86	425.29	6721.4	2796.9	4286.570788	561.1900987	2209.276129	369.1900603	M7	-1.357142857	-0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.218	96	705	144	0.204255319	6qF3	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.993717907	sgMsh2	cell line
chr7	23321572	23321572	A	AT	ENSMUST00000076470.4	1	ENSMUSG00000045693	FS	I/IX	495	Nlrp4e	ENSMUST00000076470.4:c.1491dup	ENSMUSP00000075794.3:p.Gly498TrpfsTer10	H-2-Kb	9	8	7	IQWIFFWLF	IQWIFFGSF	SMMPMBEC	131.902	108.705	0.824	539	0.104	334.688	123.389	0.369	60.65	516.58	186.9	3487.9	138.0733939	152.7953016	108.7051201	131.9015807	M7	2.128571429	2.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1039	539	0	0	NA	7qA3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.473611425	sgMsh2	cell line
chr7	80327604	80327604	G	A	ENSMUST00000032748.14	1	ENSMUSG00000030533	missense	A/V	761	Unc45a	ENSMUST00000032748.14:c.2282C>T	ENSMUSP00000032748.8:p.Ala761Val	H-2-Db	9	5	7	MALTNLVGI	MALTNLAGI	NetMHCpan	24.6	29.7	1.207	62	0.048	61.317	54.097	0.882	41.58	43.28	29.7	24.6	99.91254004	127.2389276	66.61468828	79.35421504	M7	1.671428571	1.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.07	62	45	0	0	7qD2	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.319083732	sgMsh2	cell line
chr7	44461349	44461349	A	G	ENSMUST00000058667.14	1	ENSMUSG00000047085	missense	N/S	215	Lrrc4b	ENSMUST00000058667.14:c.644A>G	ENSMUSP00000053123.8:p.Asn215Ser	H-2-Kb	8	5	7	VNLRYLSL	VNLRYLNL	NetMHC	4.8	2.81	0.585	63	0.238	7.395	4.044	0.547	2.81	4.8	4.1	5	3.987860888	9.789037676	5.257024488	12.01544888	M7	0.185714286	0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.251	63	0	0	NA	7qB3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr7	29225257	29225257	A	G	ENSMUST00000085818.5	1	ENSMUSG00000046410	missense	Y/H	241	Kcnk6	ENSMUST00000085818.5:c.721T>C	ENSMUSP00000082975.4:p.Tyr241His	H-2-Kb	8	9	3	TAHLFLGL	TAYLFLGL	NetMHCpan	18.5	3.7	0.2	69	0.203	49.985	5.299	0.106	3.02	26.9	3.7	18.5	6.898267002	81.23440428	7.173646964	73.07015019	M7	1.771428571	1.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.203	69	0	0	NA	7qB1	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.925342822	sgMsh2	cell line
chr7	46259908	46259908	T	C	ENSMUST00000164538.1	5	ENSMUSG00000009487	missense	S/P	601	Otog	ENSMUST00000164538.1:c.1801T>C	ENSMUSP00000130949.1:p.Ser601Pro	H-2-Kb	8	9	3	LSPVFLRV	LSSVFLRV	NetMHC	38.96	344.21	8.835	117	0.239	104.525	331.586	3.172	344.21	38.96	293.5	77	380.8377582	142.1477533	318.9627742	132.0504848	M7	1.157142857	1.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.243	117	0	0	NA	7qB3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr7	27240043	27240043	A	G	ENSMUST00000108378.9	1	ENSMUSG00000003762	missense	N/S	166	Coq8b	ENSMUST00000108378.9:c.497A>G	ENSMUSP00000104015.3:p.Asn166Ser	H-2-Kb	8	11	1	SSFISPQL	NSFISPQL	NetMHCpan	37.1	365.8	9.86	194	0.222	46.041	356.964	7.753	1095.41	41.18	365.8	37.1	323.3999884	50.90260401	348.1288376	61.33946729	M7	0.628571429	0.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.218	194	12	1	0.083333333	7qA3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.993717907	sgMsh2	cell line
chr7	29096187	29096187	A	G	ENSMUST00000179893.8	5	ENSMUSG00000030592	missense	F/L	1093	Ryr1	ENSMUST00000179893.8:c.3277T>C	ENSMUSP00000137123.1:p.Phe1093Leu	H-2-Kb	8	4	8	SGRWYFEL	SGRWYFEF	NetMHC	44.53	936.27	21.026	63	0.222	78.42	1301.26	16.593	936.27	44.53	351.7	54.1	1670.090478	102.7401038	1666.249377	132.6600022	M7	-0.571428571	-0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe	3	0.242	63	0	0	NA	7qB1	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr7	51574860	51574860	AT	A	ENSMUST00000043944.5	1	ENSMUSG00000055489	FS	N/X	521	Ano5	ENSMUST00000043944.5:c.1570del	ENSMUSP00000046884.5:p.Tyr524MetfsTer26	H-2-Kb	8	31	0	RSMRAASL	NA	NetMHC	52.59	NA	NA	82	0.22	128.744	NA	NA	NA	52.59	NA	135.1	NA	150.2242346	NA	122.3883275	M7	0.457142857	0.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2195	82	0	0	NA	7qB4	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr7	26808945	26808945	T	A	ENSMUST00000040944.8	1	ENSMUSG00000049685	missense	F/I	7	Cyp2g1	ENSMUST00000040944.8:c.19T>A	ENSMUSP00000047150.7:p.Phe7Ile	H-2-Kb	8	6	2	AISIFMAL	AFSIFMAL	NetMHC	64.57	256.83	3.978	108	0.185	113.748	211.421	1.859	256.83	64.57	206.7	116.9	155.5034397	110.5961477	216.1424152	140.8445349	M7	2.642857143	2.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.19	108	0	0	NA	7qA3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.866084414	sgMsh2	cell line
chr7	29061567	29061567	T	G	ENSMUST00000179893.8	5	ENSMUSG00000030592	missense	E/A	3210	Ryr1	ENSMUST00000179893.8:c.9629A>C	ENSMUSP00000137123.1:p.Glu3210Ala	H-2-Kb	8	5	7	VAFLEPAL	VAFLEPEL	SMMPMBEC	62.336	172.878	2.773	53	0.189	71.002	166.794	2.349	160.71	73.81	135.6	77.4	202.1808416	68.19303192	172.8781076	62.33615346	M7	1.271428571	1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.223	53	0	0	NA	7qB1	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr7	84594768	84594768	G	A	ENSMUST00000032865.16	1	ENSMUSG00000030630	missense	P/L	261	Fah	ENSMUST00000032865.16:c.782C>T	ENSMUSP00000032865.8:p.Pro261Leu	H-2-Kb	8	9	3	ISLWVVPM	ISPWVVPM	NetMHCpan	73.4	102.4	1.395	115	0.287	108.95	217.441	1.996	121.74	84.32	102.4	73.4	313.1410475	133.5795574	370.458872	144.1252256	M7	1.542857143	1.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.29	115	137	40	0.291970803	7qD3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr7	45711648	45711648	G	A	ENSMUST00000107737.10	1	ENSMUSG00000057342	missense	H/Y	311	Sphk2	ENSMUST00000107737.10:c.931C>T	ENSMUSP00000103366.2:p.His311Tyr	H-2-Kb	8	11	1	YSERFRAL	HSERFRAL	SMMPMBEC	51.849	100.401	1.936	108	0.259	78.81	329.414	4.18	504.04	91.59	1440.2	246.2	154.7889663	66.02980276	100.4014535	51.84895408	M7	-0.7	-0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.248	108	42	12	0.285714286	7qB3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr7	29225257	29225257	A	G	ENSMUST00000085818.5	1	ENSMUSG00000046410	missense	Y/H	241	Kcnk6	ENSMUST00000085818.5:c.721T>C	ENSMUSP00000082975.4:p.Tyr241His	H-2-Kb	8	5	7	KVLVTAHL	KVLVTAYL	NetMHC	175.61	259.86	1.48	69	0.203	245.282	288.63	1.177	259.86	175.61	317.4	242.4	323.3999884	338.6413603	255.1173529	248.1646968	M7	1.985714286	1.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.203	69	0	0	NA	7qB1	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.925342822	sgMsh2	cell line
chr7	83618603	83618603	CA	C	ENSMUST00000039317.13	1	ENSMUSG00000038540	FS	S/X	758	Tmc3	ENSMUST00000039317.13:c.2276del	ENSMUSP00000046028.7:p.Lys759SerfsTer20	H-2-Kb	8	11	2	SSQRLSKL	NA	SMM	221.177	NA	NA	47	0.213	245.789	NA	NA	NA	236.46	NA	774.2	NA	221.1770188	NA	255.1173529	M7	-0.842857143	-0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.208	47	0	0	NA	7qD3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.948134517	sgMsh2	cell line
chr7	46033961	46033961	T	C	ENSMUST00000033121.6	1	ENSMUSG00000030835	missense	S/P	44	Nomo1	ENSMUST00000033121.6:c.130T>C	ENSMUSP00000033121.5:p.Ser44Pro	H-2-Kb	8	8	4	INYPLIEI	INYSLIEI	NetMHCpan	77.5	43.5	0.561	72	0.153	353.93	215.929	0.61	146.27	262.47	43.5	77.5	285.5880296	445.3895263	301.1202761	562.0047679	M7	0.414285714	0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.161	72	88	14	0.159090909	7qB3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.733892583	sgMsh2	cell line
chr7	44461349	44461349	A	G	ENSMUST00000058667.14	1	ENSMUSG00000047085	missense	N/S	215	Lrrc4b	ENSMUST00000058667.14:c.644A>G	ENSMUSP00000053123.8:p.Asn215Ser	H-2-Kb	8	10	2	LSLGMCNL	LNLGMCNL	SMMPMBEC	245.324	511.376	2.084	63	0.238	267.625	504.938	1.887	721	280.72	498.5	373.4	470.6954498	254.5305993	511.3755976	245.323979	M7	1.042857143	1.042857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.251	63	0	0	NA	7qB3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr7	30057402	30057402	A	G	ENSMUST00000080834.14	5	ENSMUSG00000098022	missense	L/P	115	Zfp82	ENSMUST00000080834.14:c.344T>C	ENSMUSP00000079647.7:p.Leu115Pro	H-2-Kb	8	5	7	SGLKSLPL	SGLKSLLL	NetMHC	384.78	1345.27	3.496	72	0.181	478.592	1371.785	2.866	1345.27	384.78	1398.3	687.5	1139.567356	430.2689433	1451.242539	526.9143181	M7	0.671428571	0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.163	72	17	3	0.176470588	7qB1	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.743009261	sgMsh2	cell line
chr7	55979873	55979873	A	G	ENSMUST00000052204.5	1	ENSMUSG00000047037	missense	L/P	164	Nipa1	ENSMUST00000052204.5:c.491T>C	ENSMUSP00000053871.5:p.Leu164Pro	H-2-Kb	8	8	4	IVLPMLLL	IVLLMLLL	NetMHCpan	194	302.9	1.561	74	0.23	389.679	217.781	0.559	244.69	427.5	302.9	194	190.8710225	363.6972355	181.0256018	415.6616909	M7	2.814285714	2.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.216	74	28	9	0.321428571	7qB5	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.984601229	sgMsh2	cell line
chr7	48168688	48168688	A	G	ENSMUST00000094389.3	NA	ENSMUSG00000070551	missense	F/L	100	Mrgprb5	ENSMUST00000094389.3:c.298T>C	ENSMUSP00000091953.2:p.Phe100Leu	H-2-Kb	8	4	8	LNRRHTFL	LNRRHTFF	SMM	225.808	3670.625	16.255	180	0.239	394.898	3620.607	9.168	7069.17	505.52	2304.4	533.1	3670.624846	225.8083514	3570.590129	284.2758718	M7	-1.4	-1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.254	180	0	0	NA	7qB4	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr7	30790603	30790603	C	A	ENSMUST00000098559.2	1	ENSMUSG00000074199	missense	D/E	86	Krtdap	ENSMUST00000098559.2:c.258C>A	ENSMUSP00000096159.1:p.Asp86Glu	H-2-Kb	8	8	4	INWEFFPK	INWDFFPK	SMMPMBEC	52.329	79.752	1.524	121	0.248	434.482	743.11	1.71	1929.16	1125.95	1368.8	793.5	117.4194387	75.46403103	79.75170931	52.32870654	M7	-1.114285714	0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.241	121	0	0	NA	7qB1	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr7	30790603	30790603	C	A	ENSMUST00000098559.2	1	ENSMUSG00000074199	missense	D/E	86	Krtdap	ENSMUST00000098559.2:c.258C>A	ENSMUSP00000096159.1:p.Asp86Glu	H-2-Kb	9	8	4	INWEFFPKV	INWDFFPKV	NetMHC	15.02	19.47	1.296	121	0.248	35.114	40.848	1.163	19.47	15.02	28.7	19.5	67.78131653	61.53327071	52.99684305	50.72826396	M7	-0.014285714	0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.241	121	0	0	NA	7qB1	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr7	30909069	30909069	T	C	ENSMUST00000187137.6	1	ENSMUSG00000036634	missense	T/A	207	Mag	ENSMUST00000187137.6:c.619A>G	ENSMUSP00000139564.1:p.Thr207Ala	H-2-Kb	9	3	9	VSLLHFVPA	VSLLHFVPT	NetMHC	56.32	83.41	1.481	43	0.14	88.094	81.249	0.922	83.41	56.32	110.8	75.9	79.08789199	122.7750162	65.20036095	100.2882377	M7	1.657142857	2.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.17	43	0	0	NA	7qB1	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.774917634	sgMsh2	cell line
chr7	51574860	51574860	AT	A	ENSMUST00000043944.5	1	ENSMUSG00000055489	FS	N/X	521	Ano5	ENSMUST00000043944.5:c.1570del	ENSMUSP00000046884.5:p.Tyr524MetfsTer26	H-2-Kb	9	13	2	FMRRYLPGL	NA	NetMHC	66.92	NA	NA	82	0.22	115.403	NA	NA	NA	66.92	NA	112.2	NA	118.6069123	NA	168.3642965	M7	-0.671428571	-0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2195	82	0	0	NA	7qB4	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr7	51574860	51574860	AT	A	ENSMUST00000043944.5	1	ENSMUSG00000055489	FS	N/X	521	Ano5	ENSMUST00000043944.5:c.1570del	ENSMUSP00000046884.5:p.Tyr524MetfsTer26	H-2-Kb	9	10	5	LNFFMRRYL	NA	NetMHCpan	28.6	NA	NA	82	0.22	131.613	NA	NA	NA	84.12	NA	28.6	NA	179.1059444	NA	202.8850284	M7	0.142857143	0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2195	82	0	0	NA	7qB4	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr7	29225257	29225257	A	G	ENSMUST00000085818.5	1	ENSMUSG00000046410	missense	Y/H	241	Kcnk6	ENSMUST00000085818.5:c.721T>C	ENSMUSP00000082975.4:p.Tyr241His	H-2-Kb	9	8	4	VTAHLFLGL	VTAYLFLGL	NetMHCpan	60.3	48	0.796	69	0.203	154.464	101.378	0.656	66.89	127.33	48	60.3	135.865753	181.5975563	170.7064772	203.3527266	M7	1.771428571	1.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.203	69	0	0	NA	7qB1	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.925342822	sgMsh2	cell line
chr7	80082188	80082188	A	T	ENSMUST00000164056.8	1	ENSMUSG00000048897	missense	H/L	371	Zfp710	ENSMUST00000164056.8:c.1112A>T	ENSMUSP00000132361.2:p.His371Leu	H-2-Kb	9	6	6	SHLKRLMLL	SHLKRHMLL	NetMHC	135.38	88.46	0.653	67	0.328	224.071	227.686	1.016	88.46	135.38	187.3	204.3	272.9669078	243.8428356	268.0711022	278.7725451	M7	1.242857143	1.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.345	67	34	4	0.117647059	7qD2	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	2	1	sgMsh2	cell line
chr7	29225257	29225257	A	G	ENSMUST00000085818.5	1	ENSMUSG00000046410	missense	Y/H	241	Kcnk6	ENSMUST00000085818.5:c.721T>C	ENSMUSP00000082975.4:p.Tyr241His	H-2-Kb	9	9	3	TAHLFLGLV	TAYLFLGLV	NetMHC	140.53	16.05	0.114	69	0.203	228.011	38.334	0.168	16.05	140.53	34	213.3	42.66875784	242.7224795	51.90987702	282.000579	M7	2.114285714	2.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.203	69	0	0	NA	7qB1	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.925342822	sgMsh2	cell line
chr7	44461349	44461349	A	G	ENSMUST00000058667.14	1	ENSMUSG00000047085	missense	N/S	215	Lrrc4b	ENSMUST00000058667.14:c.644A>G	ENSMUSP00000053123.8:p.Asn215Ser	H-2-Kb	9	4	8	LVNLRYLSL	LVNLRYLNL	SMMPMBEC	129.196	114.881	0.889	63	0.238	148.556	115.141	0.775	62.08	155.17	115.4	218.4	121.9298389	141.9416992	114.8814742	129.1962773	M7	0.185714286	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.251	63	0	0	NA	7qB3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr7	29096187	29096187	A	G	ENSMUST00000179893.8	5	ENSMUSG00000030592	missense	F/L	1093	Ryr1	ENSMUST00000179893.8:c.3277T>C	ENSMUSP00000137123.1:p.Phe1093Leu	H-2-Kb	9	3	9	QSGRWYFEL	QSGRWYFEF	SMM	155.636	262.488	1.687	63	0.222	188.145	504.744	2.683	647.87	167.24	1424.6	323.7	262.4883301	155.6359783	361.6179668	209.0499173	M7	-0.571428571	-0.571428571	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe	3	0.242	63	0	0	NA	7qB1	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr7	45711648	45711648	G	A	ENSMUST00000107737.10	1	ENSMUSG00000057342	missense	H/Y	311	Sphk2	ENSMUST00000107737.10:c.931C>T	ENSMUSP00000103366.2:p.His311Tyr	H-2-Kb	9	10	2	IYSERFRAL	IHSERFRAL	NetMHC	254.32	236.65	0.931	108	0.259	355.725	432.852	1.217	236.65	254.32	416.7	399.8	515.3591605	371.6293451	449.0037829	339.8208329	M7	-0.7	-0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.248	108	42	12	0.285714286	7qB3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr7	78450974	78450974	C	T	ENSMUST00000039431.13	1	ENSMUSG00000059146	missense	G/R	437	Ntrk3	ENSMUST00000039431.13:c.1309G>A	ENSMUSP00000037909.7:p.Gly437Arg	H-2-Kb	9	7	5	SIAVRLAAF	SIAVGLAAF	NetMHC	255.96	2125.95	8.306	157	0.261	303.312	1965.003	6.478	2125.95	255.96	2829.2	548.2	1393.509712	258.8868552	1804.05594	347.7362769	M7	1.671428571	1.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.254	157	0	0	NA	7qD2	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr7	45918149	45918149	A	G	ENSMUST00000164119.2	1	ENSMUSG00000040212	missense	Y/H	137	Emp3	ENSMUST00000164119.2:c.409T>C	ENSMUSP00000132519.1:p.Tyr137His	H-2-Kb	9	7	5	GSFGHCFAL	GSFGYCFAL	NetMHCpan	167.9	76.2	0.454	53	0.245	176.796	128.603	0.727	121.61	260.39	76.2	167.9	146.9298381	183.2778578	135.5969747	170.3138632	M7	1.442857143	1.442857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.26	53	102	27	0.264705882	7qB3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr7	56984956	56984956	G	T	ENSMUST00000068911.12	1	ENSMUSG00000055026	missense	L/I	160	Gabrg3	ENSMUST00000068911.12:c.478C>A	ENSMUSP00000067632.6:p.Leu160Ile	H-2-Kb	9	10	2	IIYTLRLTI	ILYTLRLTI	NetMHCpan	87.7	221.9	2.53	74	0.189	300.528	1013.302	3.372	1082	274.28	221.9	87.7	1253.458616	367.3753391	944.6044779	326.7758854	M7	0.7	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.195	74	0	0	NA	7qB5	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.88887611	sgMsh2	cell line
chr7	55979873	55979873	A	G	ENSMUST00000052204.5	1	ENSMUSG00000047037	missense	L/P	164	Nipa1	ENSMUST00000052204.5:c.491T>C	ENSMUSP00000053871.5:p.Leu164Pro	H-2-Kb	9	8	4	IVLPMLLLL	IVLLMLLLL	SMM	204.696	121.649	0.594	74	0.23	235.633	198.63	0.843	238.68	304.54	1026.3	211.1	121.6494081	204.6963035	158.5805793	260.1656766	M7	2.757142857	2.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.216	74	28	9	0.321428571	7qB5	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.984601229	sgMsh2	cell line
chr7	80082188	80082188	A	T	ENSMUST00000164056.8	1	ENSMUSG00000048897	missense	H/L	371	Zfp710	ENSMUST00000164056.8:c.1112A>T	ENSMUSP00000132361.2:p.His371Leu	H-2-Kb	9	5	7	TSHLKRLML	TSHLKRHML	NetMHC	308.14	679.21	2.204	67	0.328	353.74	578.981	1.637	679.21	308.14	1396.6	945.4	478.7513372	370.7746213	450.0388435	336.7053368	M7	0.242857143	0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.345	67	34	4	0.117647059	7qD2	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	2	1	sgMsh2	cell line
chr7	84594768	84594768	G	A	ENSMUST00000032865.16	1	ENSMUSG00000030630	missense	P/L	261	Fah	ENSMUST00000032865.16:c.782C>T	ENSMUSP00000032865.8:p.Pro261Leu	H-2-Kb	9	3	9	KSFGTTISL	KSFGTTISP	NetMHC	354.9	15705.73	44.254	115	0.287	492.652	10118.657	20.539	15705.73	354.9	18480.4	530.2	2099.47158	455.1033161	4531.583638	615.5310989	M7	1.214285714	1.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.29	115	137	40	0.291970803	7qD3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr7	48643213	48643213	A	G	ENSMUST00000094383.2	NA	ENSMUSG00000070546	missense	F/L	197	Mrgprb3	ENSMUST00000094383.2:c.589T>C	ENSMUSP00000091945.1:p.Phe197Leu	H-2-Kb	9	3	9	VLFVVLCGL	VLFVVLCGF	NetMHC	404.45	968.82	2.395	158	0.228	451.067	942.784	2.09	968.82	404.45	1989	440.7	778.2336405	461.4344339	916.7480609	529.9684305	M7	2.985714286	3.642857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.238	158	0	0	NA	7qB4	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr7	48168688	48168688	A	G	ENSMUST00000094389.3	NA	ENSMUSG00000070551	missense	F/L	100	Mrgprb5	ENSMUST00000094389.3:c.298T>C	ENSMUSP00000091953.2:p.Phe100Leu	H-2-Kb	9	4	8	LNRRHTFLL	LNRRHTFFL	NetMHCpan	323.4	446.1	1.379	180	0.239	380.716	672.918	1.768	865.38	416.2	446.1	323.4	632.5720517	345.2311699	713.2634994	428.7952838	M7	-0.357142857	-0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.254	180	0	0	NA	7qB4	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr7	84916249	84916249	T	C	ENSMUST00000214501.2	5	ENSMUSG00000070459	missense	F/L	157	Olfr290	ENSMUST00000214501.2:c.469T>C	ENSMUSP00000149411.1:p.Phe157Leu	H-2-Kb	9	3	9	WAAGFLNSL	WAAGFLNSF	SMM	331.979	559.899	1.687	441	0.229	437.998	879.699	2.008	1017.66	447.2	3470.9	803.5	559.8993973	331.9785319	741.7370966	428.7952838	M7	1.071428571	1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.225	441	0	0	NA	7qD3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr7	44905812	44905812	A	G	ENSMUST00000166972.8	1	ENSMUSG00000060279	missense	V/A	443	Ap2a1	ENSMUST00000166972.8:c.1328T>C	ENSMUSP00000127842.1:p.Val443Ala	H-2-Kb	9	5	7	VDYSWYADT	VDYSWYVDT	SMMPMBEC	136.852	185.46	1.355	122	0.205	430.402	1354.693	3.148	2462.72	689.76	3036.3	1824.5	246.6664026	171.044849	185.4598909	136.851638	M7	-0.957142857	-0.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.203	122	108	22	0.203703704	7qB3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.925342822	sgMsh2	cell line
chr7	26808945	26808945	T	A	ENSMUST00000040944.8	1	ENSMUSG00000049685	missense	F/I	7	Cyp2g1	ENSMUST00000040944.8:c.19T>A	ENSMUSP00000047150.7:p.Phe7Ile	H-2-Kb	9	7	1	ISIFMALCL	FSIFMALCL	NetMHCpan	310.3	2008.2	6.472	108	0.185	371.317	1403.198	3.779	2392.05	875.31	2008.2	310.3	798.1968324	397.2921646	774.9077422	345.3424772	M7	3.014285714	3.014285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.19	108	0	0	NA	7qA3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.866084414	sgMsh2	cell line
chr7	106886682	106886682	A	G	ENSMUST00000213918.1	5	ENSMUSG00000109354	missense	L/P	45	Olfr706	ENSMUST00000213918.1:c.134T>C	ENSMUSP00000150075.1:p.Leu45Pro	H-2-Db	9	4	8	ALISNGLPL	ALISNGLLL	NetMHC	33.8	360.48	10.665	205	0.298	70.033	297.93	4.254	360.48	33.8	314.3	56	270.7821299	84.06592577	281.5593799	84.83401077	M7	0.828571429	1.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.309	205	0	0	NA	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr7	126488696	126488696	T	C	ENSMUST00000098048.5	1	ENSMUSG00000073838	missense	V/A	151	Tufm	ENSMUST00000098048.5:c.452T>C	ENSMUSP00000095656.4:p.Val151Ala	H-2-Db	9	10	2	VAAANDGPM	VVAANDGPM	NetMHC	34.31	1140.14	33.231	222	0.027	70.373	713.049	10.132	1140.14	34.31	959.9	100.5	433.1317299	67.70488426	466.1975641	73.04155325	M7	-0.5	0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.033	222	48	0	0	7qF3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.150425188	sgMsh2	cell line
chr7	108565457	108565457	A	G	ENSMUST00000075595.2	NA	ENSMUSG00000060105	missense	F/L	113	Olfr504	ENSMUST00000075595.2:c.337T>C	ENSMUSP00000075025.1:p.Phe113Leu	H-2-Db	9	6	6	YAIHCLVSM	YAIHCFVSM	NetMHC	93.71	107.99	1.152	227	0.256	321.339	304.71	0.948	107.99	93.71	252.5	306.5	430.1500721	391.3992598	356.9192732	336.1785503	M7	1.842857143	1.842857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.243	227	0	0	NA	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr7	119801262	119801262	A	G	ENSMUST00000033218.14	1	ENSMUSG00000030924	missense	N/S	90	Rexo5	ENSMUST00000033218.14:c.269A>G	ENSMUSP00000033218.8:p.Asn90Ser	H-2-Db	9	8	4	KQLSNVVVF	KQLNNVVVF	NetMHC	115.13	389.53	3.383	61	0.18	301.366	448.126	1.487	389.53	115.13	404.7	237.5	554.1406375	423.2724481	491.5526027	365.2329911	M7	2.128571429	2.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.175	61	7	1	0.142857143	7qF2	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.797709329	sgMsh2	cell line
chr7	99470339	99470339	T	A	ENSMUST00000037359.8	1	ENSMUSG00000035298	missense	Y/N	344	Klhl35	ENSMUST00000037359.8:c.1030T>A	ENSMUSP00000041363.2:p.Tyr344Asn	H-2-Db	9	4	8	CALRNDINV	CALRNDIYV	NetMHC	166.63	13.92	0.084	71	0.239	190.229	34.668	0.182	13.92	166.63	20.4	189.2	48.9350459	191.2581717	63.91017401	246.3598891	M7	-0.357142857	0.157142857	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.259	71	0	0	NA	7qE1	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr7	104618461	104618461	CT	C	ENSMUST00000098172.2	NA	ENSMUSG00000073924	FS	F/X	269	Olfr656	ENSMUST00000098172.2:c.809del	ENSMUSP00000095774.2:p.Phe270SerfsTer?	H-2-Db	9	11	2	FSHTALATM	NA	NetMHC	212.56	NA	NA	162	0.173	467.413	NA	NA	NA	212.56	NA	572.9	NA	361.9261808	NA	637.6318469	M7	0.671428571	0.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.181	162	0	0	NA	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.825059363	sgMsh2	cell line
chr7	86488673	86488673	T	C	ENSMUST00000217110.1	5	ENSMUSG00000062878	missense	S/G	293	Olfr298	ENSMUST00000217110.1:c.877A>G	ENSMUSP00000150228.1:p.Ser293Gly	H-2-Db	9	6	6	YSLRNGDVK	YSLRNSDVK	SMMPMBEC	155.443	160.905	1.035	213	0.178	236.8	279.325	1.18	384.22	301.96	2214.7	2374.5	174.4295257	171.6405905	160.9051705	155.4425814	M7	-1.114285714	-0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.173	213	0	0	NA	7qD3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.788592651	sgMsh2	cell line
chr7	105337497	105337497	A	G	ENSMUST00000213290.1	5	ENSMUSG00000043948	missense	I/T	73	Olfr691	ENSMUST00000213290.1:c.218T>C	ENSMUSP00000150297.1:p.Ile73Thr	H-2-Db	9	4	8	SMLAITDTL	SMLAITDIL	NetMHCpan	179	464.6	2.596	122	0.156	364.26	1326.091	3.641	1789.51	388.41	464.6	179	1136.632317	340.1104688	1515.549062	485.9258466	M7	1.285714286	1.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.161	122	0	0	NA	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.733892583	sgMsh2	cell line
chr7	86306696	86306696	C	T	ENSMUST00000174158.2	2	ENSMUSG00000054054	missense	C/Y	139	Olfr309	ENSMUST00000174158.2:c.416G>A	ENSMUSP00000134377.1:p.Cys139Tyr	H-2-Db	10	3	9	STIMNHYTYV	STIMNHYTCV	NetMHC	17.75	44.79	2.523	191	0.031	345.032	960.973	2.785	44.79	17.75	132.7	44.9	2680.711022	1005.19426	1789.245773	645.163813	M7	-0.557142857	-0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.039	191	0	0	NA	7qD3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.177775222	sgMsh2	cell line
chr7	119801262	119801262	A	G	ENSMUST00000033218.14	1	ENSMUSG00000030924	missense	N/S	90	Rexo5	ENSMUST00000033218.14:c.269A>G	ENSMUSP00000033218.8:p.Asn90Ser	H-2-Db	10	8	4	KQLSNVVVFI	KQLNNVVVFI	NetMHC	57.06	174.67	3.061	61	0.18	411.754	445.149	1.081	174.67	57.06	313.2	174.5	577.0985724	649.007925	876.3346825	949.882748	M7	2.228571429	2.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.175	61	7	1	0.142857143	7qF2	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.797709329	sgMsh2	cell line
chr7	102804243	102804243	T	C	ENSMUST00000061096.6	NA	ENSMUSG00000048469	missense	I/T	255	Olfr564	ENSMUST00000061096.6:c.764T>C	ENSMUSP00000129376.1:p.Ile255Thr	H-2-Kb	8	6	6	VAVFYTPL	VAVFYIPL	NetMHCpan	5.1	7.7	1.51	322	0.205	10.935	14.209	1.299	11.25	6.32	7.7	5.1	17.16880231	15.55034397	18.48161845	16.09681675	M7	1.285714286	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	322	0	0	NA	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.911667805	sgMsh2	cell line
chr7	86695231	86695231	TA	T	ENSMUST00000080165.4	2	ENSMUSG00000060688	FS	L/X	258	Olfr292	ENSMUST00000080165.4:c.777del	ENSMUSP00000079060.3:p.Lys259AsnfsTer8	H-2-Kb	8	6	7	GAYVYLNL	GAYVYLKP	NetMHC	6.75	12486.07	1849.788	157	0.172	12.305	3750.636	304.809	12486.07	6.75	5427.6	8.1	2073.671696	21.2686537	1488.469706	16.50973111	M7	1.071428571	1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.177	157	0	0	NA	7qD3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.806826007	sgMsh2	cell line
chr7	104618461	104618461	CT	C	ENSMUST00000098172.2	NA	ENSMUSG00000073924	FS	F/X	269	Olfr656	ENSMUST00000098172.2:c.809del	ENSMUSP00000095774.2:p.Phe270SerfsTer?	H-2-Kb	8	9	4	FSFSHTAL	NA	NetMHC	11.91	NA	NA	162	0.173	15.796	NA	NA	NA	11.91	NA	16.5	NA	15.09176382	NA	18.1861178	M7	0.414285714	0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.181	162	0	0	NA	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.825059363	sgMsh2	cell line
chr7	104618461	104618461	CT	C	ENSMUST00000098172.2	NA	ENSMUSG00000073924	FS	F/X	269	Olfr656	ENSMUST00000098172.2:c.809del	ENSMUSP00000095774.2:p.Phe270SerfsTer?	H-2-Kb	8	22	0	STFIFFWL	NA	SMM	6.695	NA	NA	162	0.173	10.848	NA	NA	NA	14.01	NA	31.4	NA	6.694836882	NA	7.686701211	M7	2.157142857	2.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.181	162	0	0	NA	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.825059363	sgMsh2	cell line
chr7	86306696	86306696	C	T	ENSMUST00000174158.2	2	ENSMUSG00000054054	missense	C/Y	139	Olfr309	ENSMUST00000174158.2:c.416G>A	ENSMUSP00000134377.1:p.Cys139Tyr	H-2-Kb	8	7	5	NHYTYVGL	NHYTCVGL	NetMHC	43.11	2043.45	47.401	191	0.031	68.355	1087.84	15.915	2043.45	43.11	1419.3	146	756.3799359	67.56783445	675.6783445	69.1416915	M7	0.157142857	0.157142857	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;Vardict	3	0.039	191	0	0	NA	7qD3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.177775222	sgMsh2	cell line
chr7	119801285	119801285	A	C	ENSMUST00000033218.14	1	ENSMUSG00000030924	missense	K/Q	98	Rexo5	ENSMUST00000033218.14:c.292A>C	ENSMUSP00000033218.8:p.Lys98Gln	H-2-Kb	8	6	6	VVFILQGM	VVFILKGM	NetMHCpan	32.8	53.9	1.643	68	0.147	108.167	169.285	1.565	113.28	47.78	53.9	32.8	250.4609364	168.5543635	225.2890066	188.2521739	M7	1.9	2.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.157	68	7	2	0.285714286	7qF2	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.715659227	sgMsh2	cell line
chr7	126547648	126547648	C	A	ENSMUST00000032992.6	1	ENSMUSG00000030738	missense	R/M	787	Eif3c	ENSMUST00000032992.6:c.2360G>T	ENSMUSP00000032992.4:p.Arg787Met	H-2-Kb	8	11	1	MTYLFTYS	RTYLFTYS	SMM	24.196	48.055	1.986	119	0.361	65.285	108.333	1.659	188.53	94.7	148	107.2	48.05515695	24.19580078	68.66572344	35.87071224	M7	0.257142857	0.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.37	119	491	113	0.230142566	7qF3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	2	1	sgMsh2	cell line
chr7	104618461	104618461	CT	C	ENSMUST00000098172.2	NA	ENSMUSG00000073924	FS	F/X	269	Olfr656	ENSMUST00000098172.2:c.809del	ENSMUSP00000095774.2:p.Phe270SerfsTer?	H-2-Kb	8	32	0	ICFSHRLL	NA	SMMPMBEC	70.104	NA	NA	162	0.173	84.633	NA	NA	NA	114.33	NA	80.4	NA	88.86689373	NA	70.10354824	M7	0.628571429	0.728571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.181	162	0	0	NA	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.825059363	sgMsh2	cell line
chr7	86306696	86306696	C	T	ENSMUST00000174158.2	2	ENSMUSG00000054054	missense	C/Y	139	Olfr309	ENSMUST00000174158.2:c.416G>A	ENSMUSP00000134377.1:p.Cys139Tyr	H-2-Kb	8	5	7	IMNHYTYV	IMNHYTCV	SMMPMBEC	149.534	414.706	2.773	191	0.031	155.955	702.18	4.502	1028.03	153.88	922.7	198.5	481.6593553	158.0301673	414.7056956	149.534017	M7	-0.557142857	-0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.039	191	0	0	NA	7qD3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.177775222	sgMsh2	cell line
chr7	104618461	104618461	CT	C	ENSMUST00000098172.2	NA	ENSMUSG00000073924	FS	F/X	269	Olfr656	ENSMUST00000098172.2:c.809del	ENSMUSP00000095774.2:p.Phe270SerfsTer?	H-2-Kb	8	41	0	LWYMESRL	NA	NetMHC	157.77	NA	NA	162	0.173	268.725	NA	NA	NA	157.77	NA	301	NA	461.0414792	NA	236.4503711	M7	-0.757142857	-0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.181	162	0	0	NA	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.825059363	sgMsh2	cell line
chr7	105555462	105555462	AC	A	ENSMUST00000046983.9	1	ENSMUSG00000037049	FS	P/X	183	Smpd1	ENSMUST00000046983.9:c.551del	ENSMUSP00000042187.8:p.Pro184GlnfsTer72	H-2-Kb	8	47	0	VQIHFAAA	NA	SMMPMBEC	150.918	NA	NA	82	0.268	175.233	NA	NA	NA	165.65	NA	488.7	NA	184.8161845	NA	150.9176382	M7	0.857142857	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.269	82	43	0	0	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr7	104618461	104618461	CT	C	ENSMUST00000098172.2	NA	ENSMUSG00000073924	FS	F/X	269	Olfr656	ENSMUST00000098172.2:c.809del	ENSMUSP00000095774.2:p.Phe270SerfsTer?	H-2-Kb	8	25	0	IFFWLMSI	NA	SMM	147.482	NA	NA	162	0.173	172.225	NA	NA	NA	173.35	NA	171.1	NA	147.4823333	NA	174.4777291	M7	2.014285714	2.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.181	162	0	0	NA	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.825059363	sgMsh2	cell line
chr7	104596837	104596837	G	A	ENSMUST00000215538.1	5	ENSMUSG00000051182	missense	L/F	115	Olfr655	ENSMUST00000215538.1:c.343C>T	ENSMUSP00000150381.1:p.Leu115Phe	H-2-Kb	8	7	5	RSALFVAM	RSALLVAM	NetMHCpan	90.6	2028.4	22.389	149	0.047	174.976	2130.318	12.175	4052.9	181.01	2028.4	90.6	1781.312026	168.9429215	2232.235446	209.2859144	M7	2.214285714	2.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.056	149	0	0	NA	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.255266985	sgMsh2	cell line
chr7	108668261	108668261	A	G	ENSMUST00000216331.1	5	ENSMUSG00000096209	missense	M/V	282	Olfr510	ENSMUST00000216331.1:c.844A>G	ENSMUSP00000149492.1:p.Met282Val	H-2-Kb	8	6	6	ISVFYVVV	ISVFYMVV	NetMHCpan	49.6	33.9	0.683	338	0.033	81.156	63.548	0.783	63.16	186.91	33.9	49.6	63.93519587	82.74466462	71.24263926	79.56828547	M7	2.5	2.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.027	338	0	0	NA	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.123075154	sgMsh2	cell line
chr7	105555462	105555462	AC	A	ENSMUST00000046983.9	1	ENSMUSG00000037049	FS	P/X	183	Smpd1	ENSMUST00000046983.9:c.551del	ENSMUSP00000042187.8:p.Pro184GlnfsTer72	H-2-Kb	8	38	0	STWRAQTL	NA	NetMHCpan	140.5	NA	NA	82	0.268	249.349	NA	NA	NA	259.51	NA	140.5	NA	239.1883374	NA	262.2647967	M7	-0.671428571	-0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.269	82	43	0	0	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr7	104129212	104129212	T	G	ENSMUST00000053743.5	NA	ENSMUSG00000055643	missense	D/A	135	Ubqln5	ENSMUST00000053743.5:c.404A>C	ENSMUSP00000062054.4:p.Asp135Ala	H-2-Kb	8	10	2	AAFFSQRV	ADFFSQRV	NetMHCpan	138.1	6760.2	48.951	50	0.38	418.572	5000.828	11.947	9640.55	282.85	6760.2	138.1	2646.91503	554.2937734	3241.455024	722.337231	M7	0.4	0.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.393	50	0	0	NA	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	2	1	sgMsh2	cell line
chr7	108668261	108668261	A	G	ENSMUST00000216331.1	5	ENSMUSG00000096209	missense	M/V	282	Olfr510	ENSMUST00000216331.1:c.844A>G	ENSMUSP00000149492.1:p.Met282Val	H-2-Kb	8	5	7	VISVFYVV	VISVFYMV	SMM	225.289	140.197	0.622	338	0.033	296.236	154.765	0.522	71.26	320.99	265.9	350.1	140.197413	225.2890066	169.3323751	271.4813499	M7	2.542857143	2.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.027	338	0	0	NA	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.123075154	sgMsh2	cell line
chr7	92624080	92624080	A	G	ENSMUST00000118157.7	1	ENSMUSG00000041343	missense	I/T	113	Ankrd42	ENSMUST00000118157.7:c.338T>C	ENSMUSP00000113767.1:p.Ile113Thr	H-2-Kb	8	10	2	LTINGANL	LIINGANL	SMMPMBEC	208.805	217.641	1.042	75	0.24	312.671	267.751	0.856	251.88	341.72	448	484.5	283.6220554	283.6220554	217.6406428	208.8045702	M7	0.285714286	0.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.242	75	6	3	0.5	7qE1	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr7	107902860	107902860	T	G	ENSMUST00000216937.2	3	ENSMUSG00000073893	missense	L/V	48	Olfr472	ENSMUST00000216937.2:c.142T>G	ENSMUSP00000150404.2:p.Leu48Val	H-2-Kb	8	11	1	VIRISSQL	LIRISSQL	SMM	217.14	1098.348	5.058	285	0.246	318.27	1856.107	5.832	2507.9	346.98	2954.6	880.8	1098.348092	217.1400833	1204.314735	289.5609548	M7	0.457142857	0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.248	285	0	0	NA	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr7	102640431	102640431	T	C	ENSMUST00000214841.2	5	ENSMUSG00000073971	missense	Y/H	62	Olfr554	ENSMUST00000214841.2:c.184T>C	ENSMUSP00000150312.1:p.Tyr62His	H-2-Kb	8	10	2	MHFFLCML	MYFFLCML	SMM	148.505	239.188	1.611	145	0.248	175.216	257.858	1.472	379.78	401.79	221.3	160	239.1883374	148.504632	276.528565	190.4320313	M7	2.057142857	2.057142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.267	145	0	0	NA	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr7	104618461	104618461	CT	C	ENSMUST00000098172.2	NA	ENSMUSG00000073924	FS	F/X	269	Olfr656	ENSMUST00000098172.2:c.809del	ENSMUSP00000095774.2:p.Phe270SerfsTer?	H-2-Kb	8	7	6	ALFSFSHT	ALFSFFTH	SMMPMBEC	267.756	1075.821	4.018	162	0.173	432.905	1977.3	4.568	2878.78	498.71	721.2	367.1	3554.184757	517.2970479	1075.820957	267.7564861	M7	0.557142857	0.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.181	162	0	0	NA	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.825059363	sgMsh2	cell line
chr7	100029349	100029349	A	C	ENSMUST00000107084.7	1	ENSMUSG00000030732	missense	K/T	376	Chrdl2	ENSMUST00000107084.7:c.1127A>C	ENSMUSP00000102699.1:p.Lys376Thr	H-2-Kb	8	10	2	VTGIYHLV	VKGIYHLV	SMMPMBEC	259.263	1488.47	5.741	45	0.267	418.532	4047.185	9.67	7154.5	645.35	6605.9	574.8	1437.937467	262.2647967	1488.469706	259.2626764	M7	0.985714286	0.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.285	45	0	0	NA	7qE2	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr7	104635816	104635816	CA	C	ENSMUST00000215454.2	5	ENSMUSG00000073923	FS	T/X	47	Olfr657	ENSMUST00000215454.2:c.143del	ENSMUSP00000150070.1:p.Asn48ThrfsTer14	H-2-Kb	8	13	0	CSFSSSSV	NA	NetMHCpan	347.8	NA	NA	261	0.215	456.107	NA	NA	NA	759.7	NA	347.8	NA	373.0267702	NA	539.1877292	M7	0.428571429	0.428571429	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.222	261	0	0	NA	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr7	104618461	104618461	CT	C	ENSMUST00000098172.2	NA	ENSMUSG00000073924	FS	F/X	269	Olfr656	ENSMUST00000098172.2:c.809del	ENSMUSP00000095774.2:p.Phe270SerfsTer?	H-2-Kb	8	34	0	FSHRLLTL	NA	NetMHCpan	343.8	NA	NA	162	0.173	414.251	NA	NA	NA	776.34	NA	343.8	NA	418.5429201	NA	409.9585987	M7	0.314285714	0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.181	162	0	0	NA	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.825059363	sgMsh2	cell line
chr7	104618461	104618461	CT	C	ENSMUST00000098172.2	NA	ENSMUSG00000073924	FS	F/X	269	Olfr656	ENSMUST00000098172.2:c.809del	ENSMUSP00000095774.2:p.Phe270SerfsTer?	H-2-Kb	8	31	0	SICFSHRL	NA	NetMHCpan	294	NA	NA	162	0.173	411.787	NA	NA	NA	932.09	NA	294	NA	373.0267702	NA	450.5468939	M7	0.728571429	0.728571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.181	162	0	0	NA	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.825059363	sgMsh2	cell line
chr7	106677976	106677976	T	C	ENSMUST00000215541.1	5	ENSMUSG00000051680	missense	K/R	170	Olfr693	ENSMUST00000215541.1:c.509A>G	ENSMUSP00000150203.1:p.Lys170Arg	H-2-Kb	8	5	7	MQYPFCRS	MQYPFCKS	SMM	110.342	315.312	2.858	203	0.217	395.159	833.205	2.109	3782.69	1164.02	1129.7	594.1	315.3116375	110.3417837	536.7103866	196.218522	M7	-0.914285714	-0.528571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.205	203	0	0	NA	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.9344595	sgMsh2	cell line
chr7	102804243	102804243	T	C	ENSMUST00000061096.6	NA	ENSMUSG00000048469	missense	I/T	255	Olfr564	ENSMUST00000061096.6:c.764T>C	ENSMUSP00000129376.1:p.Ile255Thr	H-2-Kb	9	5	7	AVAVFYTPL	AVAVFYIPL	NetMHC	9.55	22.58	2.364	322	0.205	25.078	36.449	1.453	22.58	9.55	31.2	10.7	41.69749833	39.45572246	59.19022625	53.85797247	M7	1.285714286	1.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	322	0	0	NA	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.911667805	sgMsh2	cell line
chr7	86306696	86306696	C	T	ENSMUST00000174158.2	2	ENSMUSG00000054054	missense	C/Y	139	Olfr309	ENSMUST00000174158.2:c.416G>A	ENSMUSP00000134377.1:p.Cys139Tyr	H-2-Kb	9	4	8	TIMNHYTYV	TIMNHYTCV	NetMHC	23.9	122.18	5.112	191	0.031	86.953	197.18	2.268	122.18	23.9	282.7	65.7	233.9429705	129.1546361	160.4168559	108.2056654	M7	-0.557142857	-0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.039	191	0	0	NA	7qD3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.177775222	sgMsh2	cell line
chr7	104618461	104618461	CT	C	ENSMUST00000098172.2	NA	ENSMUSG00000073924	FS	F/X	269	Olfr656	ENSMUST00000098172.2:c.809del	ENSMUSP00000095774.2:p.Phe270SerfsTer?	H-2-Kb	9	30	0	MSICFSHRL	NA	NetMHCpan	15.3	NA	NA	162	0.173	83.529	NA	NA	NA	24.79	NA	15.3	NA	142.2689086	NA	188.039895	M7	0.728571429	0.985714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.181	162	0	0	NA	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.825059363	sgMsh2	cell line
chr7	103383210	103383210	C	A	ENSMUST00000218246.1	5	ENSMUSG00000059874	missense	R/M	264	Olfr603	ENSMUST00000218246.1:c.791G>T	ENSMUSP00000151321.1:p.Arg264Met	H-2-Kb	9	3	9	AFFSFMTHM	AFFSFMTHR	NetMHC	35.33	1084.45	30.695	181	0.238	58.802	1265.361	21.519	1084.45	35.33	5417.8	36.3	914.3448014	81.30364195	1446.272072	107.2136299	M7	0.671428571	1.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.239	181	0	0	NA	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr7	86306696	86306696	C	T	ENSMUST00000174158.2	2	ENSMUSG00000054054	missense	C/Y	139	Olfr309	ENSMUST00000174158.2:c.416G>A	ENSMUSP00000134377.1:p.Cys139Tyr	H-2-Kb	9	6	6	MNHYTYVGL	MNHYTCVGL	NetMHC	40.8	380.5	9.326	191	0.031	98.009	573.91	5.856	380.5	40.8	447.8	46.7	700.0192775	149.3172559	918.8613834	211.9580913	M7	0.157142857	0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.039	191	0	0	NA	7qD3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.177775222	sgMsh2	cell line
chr7	104618461	104618461	CT	C	ENSMUST00000098172.2	NA	ENSMUSG00000073924	FS	F/X	269	Olfr656	ENSMUST00000098172.2:c.809del	ENSMUSP00000095774.2:p.Phe270SerfsTer?	H-2-Kb	9	22	0	STFIFFWLM	NA	SMM	35.409	NA	NA	162	0.173	47.397	NA	NA	NA	56.84	NA	81.9	NA	35.40870144	NA	37.95333991	M7	2.528571429	2.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.181	162	0	0	NA	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.825059363	sgMsh2	cell line
chr7	102804243	102804243	T	C	ENSMUST00000061096.6	NA	ENSMUSG00000048469	missense	I/T	255	Olfr564	ENSMUST00000061096.6:c.764T>C	ENSMUSP00000129376.1:p.Ile255Thr	H-2-Kb	9	8	4	VFYTPLISL	VFYIPLISL	NetMHC	89.79	84.86	0.945	322	0.205	100.968	103.132	1.021	84.86	89.79	198.8	102.6	85.13536455	99.3367621	121.129521	141.6609011	M7	1.1	1.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	322	0	0	NA	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.911667805	sgMsh2	cell line
chr7	86695231	86695231	TA	T	ENSMUST00000080165.4	2	ENSMUSG00000060688	FS	L/X	258	Olfr292	ENSMUST00000080165.4:c.777del	ENSMUSP00000079060.3:p.Lys259AsnfsTer8	H-2-Kb	9	5	8	SGAYVYLNL	SGAYVYLKP	NetMHCpan	70.7	14371.7	203.277	157	0.172	383.983	10270.6	26.748	20568.75	128.07	14371.7	70.7	4467.967444	639.8968908	6169.500447	706.7242604	M7	1.071428571	1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.177	157	0	0	NA	7qD3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.806826007	sgMsh2	cell line
chr7	86306696	86306696	C	T	ENSMUST00000174158.2	2	ENSMUSG00000054054	missense	C/Y	139	Olfr309	ENSMUST00000174158.2:c.416G>A	ENSMUSP00000134377.1:p.Cys139Tyr	H-2-Kb	9	7	5	NHYTYVGLL	NHYTCVGLL	NetMHCpan	158	983.7	6.226	191	0.031	287.784	1376.292	4.782	1490.03	183.6	983.7	158	1545.645878	461.4344339	1262.55411	391.9674468	M7	1.157142857	1.157142857	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;Vardict	3	0.039	191	0	0	NA	7qD3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.177775222	sgMsh2	cell line
chr7	102804243	102804243	T	C	ENSMUST00000061096.6	NA	ENSMUSG00000048469	missense	I/T	255	Olfr564	ENSMUST00000061096.6:c.764T>C	ENSMUSP00000129376.1:p.Ile255Thr	H-2-Kb	9	6	6	VAVFYTPLI	VAVFYIPLI	NetMHCpan	95.1	97.3	1.023	322	0.205	190.906	181.259	0.949	176.63	183.61	97.3	95.1	196.3857628	198.2028979	185.8874201	201.9528563	M7	1.671428571	1.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	322	0	0	NA	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.911667805	sgMsh2	cell line
chr7	108668261	108668261	A	G	ENSMUST00000216331.1	5	ENSMUSG00000096209	missense	M/V	282	Olfr510	ENSMUST00000216331.1:c.844A>G	ENSMUSP00000149492.1:p.Met282Val	H-2-Kb	9	8	4	VFYVVVIPM	VFYMVVIPM	SMM	159.996	188.413	1.178	338	0.033	230.97	223.476	0.968	258.54	269.52	605.2	898.3	188.4126249	159.9963223	183.7595844	192.4199068	M7	2.3	3.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.027	338	0	0	NA	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.123075154	sgMsh2	cell line
chr7	104618461	104618461	CT	C	ENSMUST00000098172.2	NA	ENSMUSG00000073924	FS	F/X	269	Olfr656	ENSMUST00000098172.2:c.809del	ENSMUSP00000095774.2:p.Phe270SerfsTer?	H-2-Kb	9	24	0	FIFFWLMSI	NA	SMM	238.292	NA	NA	162	0.173	269.137	NA	NA	NA	288.67	NA	790.8	NA	238.292295	NA	249.6031145	M7	2.014285714	2.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.181	162	0	0	NA	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.825059363	sgMsh2	cell line
chr7	85871617	85871617	G	T	ENSMUST00000077478.7	5	ENSMUSG00000070458	missense	P/Q	381	Vmn2r73	ENSMUST00000077478.7:c.1142C>A	ENSMUSP00000076687.6:p.Pro381Gln	H-2-Kb	9	4	8	FRWLFMTQL	FRWLFMTPL	NetMHC	298.04	187.21	0.628	313	0.121	354.856	246.749	0.695	187.21	298.04	356.2	1019.4	242.1642333	391.8411118	251.3332806	317.8703353	M7	1.028571429	1.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.132	313	0	0	NA	7qD3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.601700751	sgMsh2	cell line
chr7	104129212	104129212	T	G	ENSMUST00000053743.5	NA	ENSMUSG00000055643	missense	D/A	135	Ubqln5	ENSMUST00000053743.5:c.404A>C	ENSMUSP00000062054.4:p.Asp135Ala	H-2-Kb	9	9	3	LAAFFSQRV	LADFFSQRV	NetMHC	301.17	814.66	2.705	50	0.38	456.1	914.063	2.004	814.66	301.17	2680.4	469.5	843.5483883	442.7004873	984.5777112	609.8878759	M7	0.4	1.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.393	50	0	0	NA	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	2	1	sgMsh2	cell line
chr7	108466294	108466294	C	A	ENSMUST00000217616.2	NA	ENSMUSG00000096679	missense	H/Q	323	Olfr498	ENSMUST00000217616.2:c.969C>A	ENSMUSP00000150971.1:p.His323Gln	H-2-Kb	9	13	2	TQYNHNYPV	THYNHNYPV	NetMHCpan	244.2	296.1	1.213	191	0.183	335.309	309.144	0.922	322.41	309	296.1	244.2	322.1884741	416.0159675	273.0549161	361.6179668	M7	-1.457142857	-1.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.189	191	0	0	NA	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.861526075	sgMsh2	cell line
chr7	104618461	104618461	CT	C	ENSMUST00000098172.2	NA	ENSMUSG00000073924	FS	F/X	269	Olfr656	ENSMUST00000098172.2:c.809del	ENSMUSP00000095774.2:p.Phe270SerfsTer?	H-2-Kb	9	9	4	FSFSHTALA	NA	NetMHC	310.3	NA	NA	162	0.173	368.373	NA	NA	NA	310.3	NA	336.7	NA	400.0460623	NA	473.4237051	M7	0.785714286	0.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.181	162	0	0	NA	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.825059363	sgMsh2	cell line
chr7	86335914	86335914	T	C	ENSMUST00000217494.1	5	ENSMUSG00000055610	missense	T/A	161	Olfr307	ENSMUST00000217494.1:c.481A>G	ENSMUSP00000149779.1:p.Thr161Ala	H-2-Kb	9	8	4	TAGAFSMPF	TAGTFSMPF	NetMHC	318.5	245	0.769	240	0.192	454.234	392.207	0.863	245	318.5	500.5	516	361.5014137	404.6783774	422.9119919	503.7905305	M7	0.928571429	0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	240	0	0	NA	7qD3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.911667805	sgMsh2	cell line
chr7	104596837	104596837	G	A	ENSMUST00000215538.1	5	ENSMUSG00000051182	missense	L/F	115	Olfr655	ENSMUST00000215538.1:c.343C>T	ENSMUSP00000150381.1:p.Leu115Phe	H-2-Kb	9	3	9	ASVVRSALF	ASVVRSALL	SMM	248.376	147.269	0.593	149	0.047	315.02	163.216	0.518	69.76	320.12	185.8	561.2	147.2685463	248.3762124	179.1636906	309.920283	M7	1.642857143	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.056	149	0	0	NA	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.255266985	sgMsh2	cell line
chr7	104553572	104553572	T	C	ENSMUST00000216904.1	5	ENSMUSG00000073928	missense	Y/H	218	Olfr651	ENSMUST00000216904.1:c.652T>C	ENSMUSP00000150776.1:p.Tyr218His	H-2-Kb	9	7	5	IAVSHIFIL	IAVSYIFIL	NetMHCpan	162	81.6	0.504	168	0.024	254.669	192.383	0.755	205.66	324.68	81.6	162	179.1059444	223.4138023	227.6407459	285.9235978	M7	2.257142857	2.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.032	168	0	0	NA	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.145866849	sgMsh2	cell line
chr7	108668261	108668261	A	G	ENSMUST00000216331.1	5	ENSMUSG00000096209	missense	M/V	282	Olfr510	ENSMUST00000216331.1:c.844A>G	ENSMUSP00000149492.1:p.Met282Val	H-2-Kb	9	5	7	VISVFYVVV	VISVFYMVV	SMMPMBEC	160.048	178.341	1.114	338	0.033	229.748	157.682	0.686	124.7	327.2	160.8	296.9	154.5645878	162.5960534	178.3405083	160.0479073	M7	2.5	2.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.027	338	0	0	NA	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.123075154	sgMsh2	cell line
chr7	98939933	98939933	C	A	ENSMUST00000037968.9	1	ENSMUSG00000035354	missense	Q/H	420	Uvrag	ENSMUST00000037968.9:c.1260G>T	ENSMUSP00000045297.8:p.Gln420His	H-2-Kb	9	10	2	LHFDYGVYL	LQFDYGVYL	NetMHCpan	152.4	140.2	0.92	152	0.211	314.867	356.381	1.132	319.89	333.08	140.2	152.4	514.1738673	398.2080176	392.8710251	296.6538575	M7	0.614285714	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.21	152	49	11	0.224489796	7qE1	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.957251195	sgMsh2	cell line
chr7	104129212	104129212	T	G	ENSMUST00000053743.5	NA	ENSMUSG00000055643	missense	D/A	135	Ubqln5	ENSMUST00000053743.5:c.404A>C	ENSMUSP00000062054.4:p.Asp135Ala	H-2-Kb	9	11	1	AFFSQRVQL	DFFSQRVQL	NetMHC	340.85	1973.1	5.789	50	0.38	466.858	1824.504	3.908	1973.1	340.85	3384.1	498.6	1309.51356	464.6329446	1675.907328	469.0833305	M7	-0.214285714	0.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.393	50	0	0	NA	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	2	1	sgMsh2	cell line
chr7	104553572	104553572	T	C	ENSMUST00000216904.1	5	ENSMUSG00000073928	missense	Y/H	218	Olfr651	ENSMUST00000216904.1:c.652T>C	ENSMUSP00000150776.1:p.Tyr218His	H-2-Kb	9	9	3	VSHIFILRA	VSYIFILRA	NetMHCpan	292.5	55.1	0.188	168	0.024	477.512	71.123	0.149	30	481.6	55.1	292.5	97.97381063	557.3268932	87.14651012	473.4237051	M7	1.385714286	2.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.032	168	0	0	NA	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.145866849	sgMsh2	cell line
chr7	103328734	103328734	A	G	ENSMUST00000214765.2	5	ENSMUSG00000073951	missense	I/V	83	Olfr598	ENSMUST00000214765.2:c.247A>G	ENSMUSP00000149199.1:p.Ile83Val	H-2-Kb	9	11	1	VAPKMLAIF	IAPKMLAIF	SMM	313.408	461.434	1.472	384	0.198	428.113	513.348	1.199	600.96	490.57	431.2	429.4	461.4344339	313.4079437	565.2622723	426.8251484	M7	1.328571429	1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.197	384	0	0	NA	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.897992788	sgMsh2	cell line
chr7	126547648	126547648	C	A	ENSMUST00000032992.6	1	ENSMUSG00000030738	missense	R/M	787	Eif3c	ENSMUST00000032992.6:c.2360G>T	ENSMUSP00000032992.4:p.Arg787Met	H-2-Kb	9	11	1	MTYLFTYSS	RTYLFTYSS	SMM	195.483	371.629	1.901	119	0.361	432.287	663.22	1.534	1429.38	786.69	524.3	433.8	371.6293451	195.4834522	802.1396792	430.7745129	M7	0.242857143	0.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.37	119	491	113	0.230142566	7qF3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	2	1	sgMsh2	cell line
chr7	108668261	108668261	A	G	ENSMUST00000216331.1	5	ENSMUSG00000096209	missense	M/V	282	Olfr510	ENSMUST00000216331.1:c.844A>G	ENSMUSP00000149492.1:p.Met282Val	H-2-Kb	9	6	6	ISVFYVVVI	ISVFYMVVI	NetMHCpan	281.1	221.9	0.789	338	0.033	499.675	332.515	0.665	518.1	869.64	221.9	281.1	432.6233939	644.3324442	232.4074256	355.017695	M7	3.257142857	3.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.027	338	0	0	NA	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.123075154	sgMsh2	cell line
chr7	140691534	140691534	G	A	ENSMUST00000214637.2	3	ENSMUSG00000066122	missense	V/I	210	Olfr45	ENSMUST00000214637.2:c.628G>A	ENSMUSP00000149309.1:p.Val210Ile	H-2-Kb	8	11	1	INFVLTLL	VNFVLTLL	NetMHCpan	9.1	8.9	0.978	574	0.014	21.145	19.772	0.935	12.27	13.2	8.9	9.1	27.27344509	29.08975074	30.74255792	29.97367541	M7	2.028571429	2.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.013	574	0	0	NA	7qF4	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.059258407	sgMsh2	cell line
chr8	40380689	40380689	G	A	ENSMUST00000068999.13	5	ENSMUSG00000039478	missense	V/I	455	Micu3	ENSMUST00000068999.13:c.1363G>A	ENSMUSP00000070241.7:p.Val455Ile	H-2-Kb	8	10	2	AIYVATGL	AVYVATGL	NetMHC	29.49	43.16	1.464	155	0.155	69.176	86.184	1.246	43.16	29.49	44.8	52.7	134.5054866	85.65249141	127.5674869	90.93686959	M7	1.7	1.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.162	155	10	4	0.4	8qA4	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.738450922	sgMsh2	cell line
chr8	15027907	15027907	G	T	ENSMUST00000069399.6	1	ENSMUSG00000055675	missense	D/Y	169	Kbtbd11	ENSMUST00000069399.6:c.505G>T	ENSMUSP00000068321.5:p.Asp169Tyr	H-2-Kb	8	9	3	RSYYFRAR	RSDYFRAR	SMM	74.257	2408.463	32.434	39	0.179	105.364	8423.468	79.947	13989.82	89.74	13235	429	2408.463117	74.25744462	3611.935614	120.9873599	M7	-1.114285714	-1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.222	39	1	0	0	8qA1.1	chr8-3154030-19240253	5	3	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr7	143764865	143764865	A	G	ENSMUST00000058092.7	1	ENSMUSG00000050276	missense	V/A	170	Mrgprg	ENSMUST00000058092.7:c.509T>C	ENSMUSP00000060411.6:p.Val170Ala	H-2-Kb	8	5	7	SVTWLAAL	SVTWLAVL	NetMHC	159.87	1117.42	6.99	138	0.239	214.27	627.213	2.927	1117.42	159.87	483.5	188.8	564.598864	239.7397234	689.8267002	306.71852	M7	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.269	138	0	0	NA	7qF5	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr7	128129629	128129629	A	G	ENSMUST00000033053.7	1	ENSMUSG00000030789	missense	T/A	4	Itgax	ENSMUST00000033053.7:c.10A>G	ENSMUSP00000033053.6:p.Thr4Ala	H-2-Kb	8	4	1	AWIAFLLL	TWIAFLLL	NetMHC	160.15	143.2	0.894	113	0.159	215.414	169.905	0.789	143.2	160.15	172.8	252.2	172.8781076	218.1423563	167.0090478	212.686537	M7	2.8	2.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.157	113	0	0	NA	7qF3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.715659227	sgMsh2	cell line
chr8	66704576	66704576	T	G	ENSMUST00000039303.6	1	ENSMUSG00000036437	missense	V/G	216	Npy1r	ENSMUST00000039303.6:c.647T>G	ENSMUSP00000045530.5:p.Val216Gly	H-2-Kb	8	11	1	GLQYFGPL	VLQYFGPL	NetMHC	232.2	21.27	0.092	140	0.15	412.807	40.168	0.097	21.27	232.2	29.9	298.7	51.72970479	827.4466462	50.43592613	526.9143181	M7	0.514285714	0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.155	140	0	0	NA	8qB3.1	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.706542549	sgMsh2	cell line
chr7	141442988	141442988	A	T	ENSMUST00000026580.11	5	ENSMUSG00000025507	missense	L/H	97	Pidd1	ENSMUST00000026580.11:c.290T>A	ENSMUSP00000026580.5:p.Leu97His	H-2-Kb	8	7	5	SLLRHRSL	SLLRLRSL	SMM	211.709	469.613	2.218	27	0.185	277.12	461.12	1.664	729.3	328.95	329.8	360.2	469.6128803	211.7093311	452.6265239	225.2890066	M7	-0.228571429	-0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.231	27	3	2	0.666666667	7qF5	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr7	139511443	139511443	TA	T	ENSMUST00000026550.13	1	ENSMUSG00000025477	FS	L/X	114	Inpp5a	ENSMUST00000026550.13:c.347del	ENSMUSP00000026550.7:p.Asn116ThrfsTer66	H-2-Kb	8	47	0	SSHRTTFL	NA	SMMPMBEC	279.731	NA	NA	145	0.255	346.663	NA	NA	NA	383.77	NA	829.5	NA	309.5565516	NA	279.7306149	M7	-0.471428571	-0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.237	145	35	2	0.057142857	7qF4	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr8	10506541	10506541	A	G	ENSMUST00000207477.1	1	ENSMUSG00000039057	missense	T/A	1001	Myo16	ENSMUST00000207477.1:c.3001A>G	ENSMUSP00000146677.1:p.Thr1001Ala	H-2-Kb	8	9	3	TSAFLQRL	TSTFLQRL	NetMHCpan	143.9	165.1	1.147	98	0.143	377.044	365.378	0.969	321.74	387.87	165.1	143.9	409.0157201	366.2182643	498.5859086	494.0148455	M7	0.485714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.163	98	0	0	NA	8qA1.1	chr8-3154030-19240253	5	3	2	0.9	4.102505121	NA	1	0.743009261	sgMsh2	cell line
chr7	133721362	133721362	T	C	ENSMUST00000033290.11	1	ENSMUSG00000030986	missense	N/D	708	Dhx32	ENSMUST00000033290.11:c.2122A>G	ENSMUSP00000033290.5:p.Asn708Asp	H-2-Kb	8	5	7	PQYYFSDL	PQYYFSNL	SMM	381.716	59.257	0.155	107	0.243	426.377	54.129	0.127	23.37	432.28	49	468.5	59.2570463	381.7156799	70.10354824	420.4748265	M7	-0.542857143	-0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.254	107	213	36	0.169014085	7qF3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr8	60933131	60933131	A	G	ENSMUST00000004430.13	1	ENSMUSG00000004319	missense	F/L	296	Clcn3	ENSMUST00000004430.13:c.886T>C	ENSMUSP00000004430.7:p.Phe296Leu	H-2-Kb	8	11	1	LSYLFPKY	FSYLFPKY	SMMPMBEC	193.526	164.718	0.851	140	0.414	405.461	373.119	0.92	488.76	453.04	564.3	542.4	257.4779247	357.8821189	164.7175978	193.5263029	M7	-0.328571429	0.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.401	140	21	4	0.19047619	8qB3.1	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	2	1	sgMsh2	cell line
chr8	54665014	54665014	T	C	ENSMUST00000144711.8	1	ENSMUSG00000039375	missense	K/R	556	Wdr17	ENSMUST00000144711.8:c.1667A>G	ENSMUSP00000117710.2:p.Lys556Arg	H-2-Kb	8	8	4	FHVRWSPL	FHVKWSPL	SMMPMBEC	280.375	511.376	1.824	195	0.123	321.318	559.573	1.741	848.67	461.95	504.2	307.1	607.7710368	335.5366776	511.3755976	280.3754606	M7	-0.428571429	-0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.125	195	0	0	NA	8qB1.3	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.569792378	sgMsh2	cell line
chr8	66704576	66704576	T	G	ENSMUST00000039303.6	1	ENSMUSG00000036437	missense	V/G	216	Npy1r	ENSMUST00000039303.6:c.647T>G	ENSMUSP00000045530.5:p.Val216Gly	H-2-Kb	9	10	2	LGLQYFGPL	LVLQYFGPL	NetMHC	9.41	10.49	1.115	140	0.15	60.128	37.163	0.618	10.49	9.41	15	12.3	74.83590241	157.438158	59.32667381	107.9567993	M7	0.514285714	0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.155	140	0	0	NA	8qB3.1	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.706542549	sgMsh2	cell line
chr8	15027907	15027907	G	T	ENSMUST00000069399.6	1	ENSMUSG00000055675	missense	D/Y	169	Kbtbd11	ENSMUST00000069399.6:c.505G>T	ENSMUSP00000068321.5:p.Asp169Tyr	H-2-Kb	9	9	3	RSYYFRARA	RSDYFRARA	NetMHC	11.71	2430.72	207.576	39	0.179	157.07	3580.1	22.793	2430.72	11.71	4072.4	41.8	3785.384504	272.3391013	3374.815227	274.9476424	M7	-0.742857143	-0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.222	39	1	0	0	8qA1.1	chr8-3154030-19240253	5	3	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr7	143764865	143764865	A	G	ENSMUST00000058092.7	1	ENSMUSG00000050276	missense	V/A	170	Mrgprg	ENSMUST00000058092.7:c.509T>C	ENSMUSP00000060411.6:p.Val170Ala	H-2-Kb	9	4	8	TSVTWLAAL	TSVTWLAVL	NetMHC	23.2	97.58	4.206	138	0.239	112.97	169.914	1.504	97.58	23.2	118.9	47.6	317.0370367	224.9624328	220.9276129	178.3405083	M7	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.269	138	0	0	NA	7qF5	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr8	64968763	64968763	T	A	ENSMUST00000026595.12	1	ENSMUSG00000025521	missense	Y/N	244	Tmem192	ENSMUST00000026595.12:c.730T>A	ENSMUSP00000026595.5:p.Tyr244Asn	H-2-Kb	9	10	2	VNLKRHNAL	VYLKRHNAL	NetMHC	34.04	134.06	3.938	145	0.179	64.478	127.715	1.981	134.06	34.04	385.2	63	121.3696222	69.04146529	115.1463034	65.95534555	M7	-0.814285714	-0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.174	145	46	12	0.260869565	8qB3.1	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.79315099	sgMsh2	cell line
chr8	54665014	54665014	T	C	ENSMUST00000144711.8	1	ENSMUSG00000039375	missense	K/R	556	Wdr17	ENSMUST00000144711.8:c.1667A>G	ENSMUSP00000117710.2:p.Lys556Arg	H-2-Kb	9	7	5	VFHVRWSPL	VFHVKWSPL	SMM	36.992	55.349	1.496	195	0.123	40.508	60.35	1.49	50.57	39.4	239.9	169.2	55.34902819	36.99218633	65.35066331	41.61500968	M7	-0.428571429	0.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.125	195	0	0	NA	8qB1.3	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.569792378	sgMsh2	cell line
chr7	141442988	141442988	A	T	ENSMUST00000026580.11	5	ENSMUSG00000025507	missense	L/H	97	Pidd1	ENSMUST00000026580.11:c.290T>A	ENSMUSP00000026580.5:p.Leu97His	H-2-Kb	9	6	6	WSLLRHRSL	WSLLRLRSL	NetMHC	100.69	132.06	1.312	27	0.185	282.077	293.949	1.042	132.06	100.69	315.5	287.3	299.9922256	335.8226621	287.9055255	276.8534884	M7	-0.228571429	-0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.231	27	3	2	0.666666667	7qF5	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr8	3511725	3511725	T	C	ENSMUST00000004683.12	1	ENSMUSG00000004567	missense	V/A	425	Mcoln1	ENSMUST00000004683.12:c.1274T>C	ENSMUSP00000004683.6:p.Val425Ala	H-2-Kb	9	10	2	SAMRFCCCV	SVMRFCCCV	NetMHC	154.29	224.62	1.456	222	0.185	407.87	486.321	1.192	224.62	154.29	307.2	225.2	665.4416808	591.7114865	682.7315929	590.540925	M7	1.7	1.7	FALSE	FALSE	FALSE	3	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.173	222	53	10	0.188679245	8qA1.1	chr8-3154030-19240253	5	3	2	0.9	4.102505121	NA	1	0.788592651	sgMsh2	cell line
chr7	128129629	128129629	A	G	ENSMUST00000033053.7	1	ENSMUSG00000030789	missense	T/A	4	Itgax	ENSMUST00000033053.7:c.10A>G	ENSMUSP00000033053.6:p.Thr4Ala	H-2-Kb	9	4	1	AWIAFLLLL	TWIAFLLLL	SMM	88.127	74.836	0.849	113	0.159	167.236	138.946	0.831	159.52	185.45	256.4	410.7	74.83590241	88.12720572	118.3722765	149.021867	M7	3.471428571	3.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.157	113	0	0	NA	7qF3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.715659227	sgMsh2	cell line
chr8	64968767	64968767	T	C	ENSMUST00000026595.12	1	ENSMUSG00000025521	missense	L/P	245	Tmem192	ENSMUST00000026595.12:c.734T>C	ENSMUSP00000026595.5:p.Leu245Pro	H-2-Kb	9	9	3	VYPKRHNAL	VYLKRHNAL	SMM	208.022	121.37	0.583	145	0.172	252.033	127.715	0.507	134.06	286.67	385.2	1208.2	121.3696222	208.0223508	115.1463034	217.3952246	M7	-1.585714286	-1.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.172	145	47	11	0.234042553	8qB3.1	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.784034312	sgMsh2	cell line
chr7	128129629	128129629	A	G	ENSMUST00000033053.7	1	ENSMUSG00000030789	missense	T/A	4	Itgax	ENSMUST00000033053.7:c.10A>G	ENSMUSP00000033053.6:p.Thr4Ala	H-2-Kb	9	3	2	CAWIAFLLL	CTWIAFLLL	SMM	226.522	311.968	1.377	113	0.159	314.24	392.132	1.248	345.48	288.66	1065.6	854.3	311.967965	226.5217979	438.783209	339.8208329	M7	2.8	2.8	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.157	113	0	0	NA	7qF3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.715659227	sgMsh2	cell line
chr8	15027907	15027907	G	T	ENSMUST00000069399.6	1	ENSMUSG00000055675	missense	D/Y	169	Kbtbd11	ENSMUST00000069399.6:c.505G>T	ENSMUSP00000068321.5:p.Asp169Tyr	H-2-Kb	9	7	5	AARSYYFRA	AARSDYFRA	NetMHC	339.41	8461.75	24.931	39	0.179	377.643	5794.815	15.345	8461.75	339.41	8550.5	375	3098.203926	380.2857045	3127.879401	444.8872915	M7	-1.114285714	-0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.222	39	1	0	0	8qA1.1	chr8-3154030-19240253	5	3	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr8	70078389	70078389	A	G	ENSMUST00000110160.8	1	ENSMUSG00000036151	missense	Y/C	264	Tm6sf2	ENSMUST00000110160.8:c.791A>G	ENSMUSP00000105788.2:p.Tyr264Cys	H-2-Kb	9	9	3	VACPKLQML	VAYPKLQML	SMMPMBEC	273.684	38.129	0.139	146	0.178	454.116	26.502	0.058	21.3	546.73	19.9	1159.1	31.70370367	361.5014137	38.12852457	273.6843727	M7	0.428571429	0.471428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.185	146	4	1	0.25	8qB3.3	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.843292719	sgMsh2	cell line
chr8	60933131	60933131	A	G	ENSMUST00000004430.13	1	ENSMUSG00000004319	missense	F/L	296	Clcn3	ENSMUST00000004430.13:c.886T>C	ENSMUSP00000004430.7:p.Phe296Leu	H-2-Kb	9	11	1	LSYLFPKYS	FSYLFPKYS	SMM	242.164	248.949	1.028	140	0.414	478.777	542.536	1.133	1381.05	1260.21	550.2	491.7	248.9487787	242.1642333	534.872168	465.8541836	M7	-0.328571429	0.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.401	140	21	4	0.19047619	8qB3.1	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	2	1	sgMsh2	cell line
chr8	111688682	111688682	T	G	ENSMUST00000034435.6	1	ENSMUSG00000031957	missense	D/A	120	Ctrb1	ENSMUST00000034435.6:c.359A>C	ENSMUSP00000034435.5:p.Asp120Ala	H-2-Db	9	6	6	FTVRNAITL	FTVRNDITL	NetMHC	11.76	23.98	2.039	75	0.28	69.176	86.239	1.247	23.98	11.76	37.7	23.9	134.778308	114.4511076	138.2197172	117.9152565	M7	0.8	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.287	75	0	0	NA	8qE1	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	2	1	sgMsh2	cell line
chr8	84225887	84225887	G	A	ENSMUST00000039480.6	1	ENSMUSG00000035671	missense	A/V	482	Zswim4	ENSMUST00000039480.6:c.1445C>T	ENSMUSP00000040078.5:p.Ala482Val	H-2-Db	9	6	6	KALRLVCAI	KALRLACAI	SMMPMBEC	304.488	302.392	0.993	28	0.179	334.824	298.627	0.892	238.18	337.28	712.3	602.2	294.86281	332.3686094	302.3917929	304.4878727	M7	2.3	2.3	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.186	28	36	7	0.194444444	8qC2	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.847851058	sgMsh2	cell line
chr8	88308681	88308681	T	G	ENSMUST00000171456.8	1	ENSMUSG00000031659	missense	L/R	71	Adcy7	ENSMUST00000171456.8:c.212T>G	ENSMUSP00000132528.1:p.Leu71Arg	H-2-Kb	8	8	4	TAFRMLTL	TAFLMLTL	NetMHCpan	29.4	51.9	1.765	144	0.215	80.349	113.425	1.412	108.07	64.15	51.9	29.4	118.7790917	97.44061133	118.7790917	96.54727043	M7	1.271428571	1.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.223	144	0	0	NA	8qC3	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr8	111504457	111504457	A	G	ENSMUST00000034437.7	1	ENSMUSG00000031959	missense	Y/H	40	Wdr59	ENSMUST00000034437.7:c.118T>C	ENSMUSP00000034437.7:p.Tyr40His	H-2-Kb	8	5	7	SGRRFLHI	SGRRFLYI	NetMHC	86.4	125.88	1.457	189	0.122	194.02	184.068	0.949	125.88	86.4	157.4	170.4	210.7366151	220.6683258	223.738128	217.6406428	M7	-0.214285714	-0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.125	189	33	0	0	8qE1	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	0.569792378	sgMsh2	cell line
chr8	91096777	91096777	A	C	ENSMUST00000034091.7	1	ENSMUSG00000031666	missense	K/N	487	Rbl2	ENSMUST00000034091.7:c.1461A>C	ENSMUSP00000034091.7:p.Lys487Asn	H-2-Kb	8	11	1	NHFRFAEM	KHFRFAEM	NetMHC	86.94	15.02	0.173	138	0.188	143.663	41.161	0.287	15.02	86.94	27.4	128.2	55.42937734	166.241711	54.92119775	159.1255801	M7	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.209	138	47	12	0.255319149	8qC4	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.952692856	sgMsh2	cell line
chr8	91087019	91087019	A	T	ENSMUST00000034091.7	1	ENSMUSG00000031666	missense	L/F	340	Rbl2	ENSMUST00000034091.7:c.1020A>T	ENSMUSP00000034091.7:p.Leu340Phe	H-2-Kb	8	9	3	YVFAAGNL	YVLAAGNL	NetMHCpan	70.5	600.1	8.512	110	0.236	98.87	545.923	5.522	778.93	93.33	600.1	70.5	436.2545806	104.4094962	491.7450535	113.6946424	M7	1.5	1.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.233	110	76	18	0.236842105	8qC4	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr8	110609672	110609672	G	T	ENSMUST00000043141.6	1	ENSMUSG00000059854	missense	S/I	5027	Hydin	ENSMUST00000043141.6:c.15080G>T	ENSMUSP00000046204.6:p.Ser5027Ile	H-2-Kb	8	6	6	VFFEPIHL	VFFEPSHL	SMM	70.915	50.786	0.716	133	0.128	116.563	75.56	0.648	78.05	130.15	111	140.7	50.78553127	70.91530907	73.07015019	102.9769442	M7	0.8	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.144	133	0	0	NA	8qD3	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	0.656400819	sgMsh2	cell line
chr8	84090184	84090184	A	G	ENSMUST00000005600.5	1	ENSMUSG00000031706	missense	Y/C	448	Rfx1	ENSMUST00000005600.5:c.1343A>G	ENSMUSP00000005600.5:p.Tyr448Cys	H-2-Kb	8	6	6	TLYCHCLL	TLYCHYLL	NetMHCpan	80.9	40	0.494	69	0.261	162.666	120.547	0.741	127.4	230.66	40	80.9	113.6946424	154.4329616	132.0504848	170.8991883	M7	1.7	1.7	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.251	69	14	4	0.285714286	8qC2	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr8	88308681	88308681	T	G	ENSMUST00000171456.8	1	ENSMUSG00000031659	missense	L/R	71	Adcy7	ENSMUST00000171456.8:c.212T>G	ENSMUSP00000132528.1:p.Leu71Arg	H-2-Kb	8	6	6	LGTAFRML	LGTAFLML	NetMHC	239.18	645.82	2.7	144	0.215	277.583	372.362	1.341	645.82	239.18	297.2	304.6	360.3628392	270.2340064	384.3616066	284.9311953	M7	0.671428571	0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.223	144	0	0	NA	8qC3	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr8	106131676	106131676	A	C	ENSMUST00000115979.8	1	ENSMUSG00000084128	missense	F/L	684	Esrp2	ENSMUST00000115979.8:c.2052T>G	ENSMUSP00000111639.2:p.Phe684Leu	H-2-Kb	8	9	3	SVLQAYQL	SVFQAYQL	NetMHCpan	279.8	34.1	0.122	182	0.181	297.844	56.276	0.189	45.45	340.13	34.1	279.8	67.10270075	280.3754606	72.90209351	315.3116375	M7	0.757142857	0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.176	182	50	8	0.16	8qD3	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	0.802267668	sgMsh2	cell line
chr8	70398314	70398314	C	T	ENSMUST00000076615.5	1	ENSMUSG00000003575	missense	C/Y	216	Crtc1	ENSMUST00000076615.5:c.647G>A	ENSMUSP00000075916.5:p.Cys216Tyr	H-2-Kb	8	9	3	KSYEVPGI	KSCEVPGI	NetMHCpan	357.9	11426.6	31.927	66	0.318	442.04	8252.577	18.669	15945.61	452.82	11426.6	357.9	5078.553127	431.2608157	4997.352678	502.041941	M7	0.157142857	0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.344	66	27	4	0.148148148	8qB3.3	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	2	1	sgMsh2	cell line
chr8	111713461	111713461	T	A	ENSMUST00000166232.3	1	ENSMUSG00000031955	missense	S/C	634	Bcar1	ENSMUST00000166232.3:c.1900A>T	ENSMUSP00000129584.2:p.Ser634Cys	H-2-Kb	8	11	1	CSIQSRPL	SSIQSRPL	SMM	236.995	82.175	0.347	135	0.237	403.653	90.714	0.225	64.83	471.77	297.7	602.8	82.17505435	236.9954455	99.25216755	335.5366776	M7	-0.414285714	-0.414285714	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.225	135	196	38	0.193877551	8qE1	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr8	113775269	113775269	G	A	ENSMUST00000093113.4	1	ENSMUSG00000053399	missense	T/I	320	Adamts18	ENSMUST00000093113.4:c.959C>T	ENSMUSP00000090801.4:p.Thr320Ile	H-2-Kb	8	6	6	TTYILIVM	TTYILTVM	SMM	348.129	315.312	0.906	133	0.233	404.208	322.362	0.798	371.96	735.65	145.7	430.2	315.3116375	348.1288376	329.4124431	378.2160895	M7	2.414285714	2.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.246	133	0	0	NA	8qE1	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr8	71461316	71461316	C	T	ENSMUST00000008094.9	1	ENSMUSG00000007950	missense	A/T	223	Abhd8	ENSMUST00000008094.9:c.667G>A	ENSMUSP00000008094.8:p.Ala223Thr	H-2-Kb	9	3	9	AAYTFYALT	AAYTFYALA	NetMHC	9.36	7.34	0.784	61	0.18	25.373	33.525	1.321	7.34	9.36	11.3	14.5	58.09115347	37.42053566	55.75065832	36.24515823	M7	0.628571429	0.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.219	61	74	16	0.216216216	8qB3.3	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.998276246	sgMsh2	cell line
chr8	72204426	72204426	A	G	ENSMUST00000098630.4	1	ENSMUSG00000074240	missense	F/L	156	Cib3	ENSMUST00000098630.4:c.466T>C	ENSMUSP00000096231.3:p.Phe156Leu	H-2-Kb	9	9	9	RAPDFLSTL	RAPDFLSTF	NetMHC	58.26	423.47	7.269	139	0.151	228.532	537.632	2.353	423.47	58.26	324.4	70.6	651.7934622	386.4648502	946.7820161	547.3309412	M7	0.542857143	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.161	139	1	0	0	8qB3.3	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.733892583	sgMsh2	cell line
chr8	113775269	113775269	G	A	ENSMUST00000093113.4	1	ENSMUSG00000053399	missense	T/I	320	Adamts18	ENSMUST00000093113.4:c.959C>T	ENSMUSP00000090801.4:p.Thr320Ile	H-2-Kb	9	11	1	IVMNMVSSL	TVMNMVSSL	NetMHCpan	52.8	154	2.917	133	0.233	176.346	339.812	1.927	210.54	69.39	154	52.8	522.5285205	304.8667072	469.0833305	283.3022345	M7	0.957142857	1.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.246	133	0	0	NA	8qE1	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr8	83668275	83668275	T	C	ENSMUST00000019608.6	1	ENSMUSG00000019464	missense	L/P	127	Ptger1	ENSMUST00000019608.6:c.380T>C	ENSMUSP00000019608.5:p.Leu127Pro	H-2-Kb	9	4	8	VFFGLCPPL	VFFGLCPLL	SMM	82.435	104.981	1.274	61	0.18	85.654	119.254	1.392	118.49	85.16	154.5	106.6	104.9808295	82.43468827	120.0189989	86.14895227	M7	1.328571429	2.014285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.196	61	8	1	0.125	8qC2	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.893434449	sgMsh2	cell line
chr8	88308681	88308681	T	G	ENSMUST00000171456.8	1	ENSMUSG00000031659	missense	L/R	71	Adcy7	ENSMUST00000171456.8:c.212T>G	ENSMUSP00000132528.1:p.Leu71Arg	H-2-Kb	9	8	4	TAFRMLTLF	TAFLMLTLF	NetMHCpan	130.1	292.7	2.25	144	0.215	139.907	123.623	0.884	121.28	130.84	292.7	130.1	101.8849414	148.9738357	125.9650316	169.531342	M7	1.414285714	1.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.223	144	0	0	NA	8qC3	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr8	84090184	84090184	A	G	ENSMUST00000005600.5	1	ENSMUSG00000031706	missense	Y/C	448	Rfx1	ENSMUST00000005600.5:c.1343A>G	ENSMUSP00000005600.5:p.Tyr448Cys	H-2-Kb	9	5	7	STLYCHCLL	STLYCHYLL	NetMHC	169.86	124.11	0.731	69	0.261	350.723	303.594	0.866	124.11	169.86	249	294.9	358.1871488	406.5462879	417.1094219	428.7952838	M7	1.7	1.7	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.251	69	14	4	0.285714286	8qC2	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr8	91096777	91096777	A	C	ENSMUST00000034091.7	1	ENSMUSG00000031666	missense	K/N	487	Rbl2	ENSMUST00000034091.7:c.1461A>C	ENSMUSP00000034091.7:p.Lys487Asn	H-2-Kb	9	10	2	NNHFRFAEM	NKHFRFAEM	NetMHC	229.62	1954.12	8.51	138	0.188	250.217	1579.731	6.313	1954.12	229.62	4212.7	309.8	1205.341196	256.5133662	1077.085055	243.9214539	M7	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.209	138	47	12	0.255319149	8qC4	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.952692856	sgMsh2	cell line
chr8	72002469	72002469	A	T	ENSMUST00000003574.4	1	ENSMUSG00000003484	missense	C/S	88	Cyp4f18	ENSMUST00000003574.4:c.262T>A	ENSMUSP00000003574.4:p.Cys88Ser	H-2-Kb	9	10	2	ASCWWVGPL	ACCWWVGPL	NetMHCpan	203.7	2136.6	10.489	78	0.077	285.435	2448.939	8.58	3889.69	231.83	2136.6	203.7	2761.277156	654.8020042	964.3840079	339.0392667	M7	0.957142857	0.957142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.087	78	0	0	NA	8qB3.3	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.396575495	sgMsh2	cell line
chr8	110609672	110609672	G	T	ENSMUST00000043141.6	1	ENSMUSG00000059854	missense	S/I	5027	Hydin	ENSMUST00000043141.6:c.15080G>T	ENSMUSP00000046204.6:p.Ser5027Ile	H-2-Kb	9	3	9	SVEVFFEPI	SVEVFFEPS	NetMHCpan	204.2	4998.9	24.48	133	0.128	300.236	2557.842	8.519	4275.74	248.71	4998.9	204.2	597.1865254	393.6497682	839.9433576	351.7628732	M7	0.814285714	0.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.144	133	0	0	NA	8qD3	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	0.656400819	sgMsh2	cell line
chr8	83668425	83668425	A	G	ENSMUST00000019608.6	1	ENSMUSG00000019464	missense	H/R	177	Ptger1	ENSMUST00000019608.6:c.530A>G	ENSMUSP00000019608.5:p.His177Arg	H-2-Kb	9	4	8	VALLPLVRV	VALLPLVHV	NetMHC	257.84	301.42	1.169	91	0.165	379.784	418.959	1.103	301.42	257.84	963.4	1025.1	359.0128555	332.7438214	478.9056933	426.8251484	M7	1.957142857	2.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.167	91	8	1	0.125	8qC2	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.761242617	sgMsh2	cell line
chr8	88308681	88308681	T	G	ENSMUST00000171456.8	1	ENSMUSG00000031659	missense	L/R	71	Adcy7	ENSMUST00000171456.8:c.212T>G	ENSMUSP00000132528.1:p.Leu71Arg	H-2-Kb	9	11	1	RMLTLFVAL	LMLTLFVAL	NetMHCpan	133.8	233.9	1.748	144	0.215	236.285	189.074	0.8	243.12	268.08	233.9	133.8	144.2480663	244.4049514	122.5321348	228.165512	M7	2.785714286	2.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.223	144	0	0	NA	8qC3	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr8	111504457	111504457	A	G	ENSMUST00000034437.7	1	ENSMUSG00000031959	missense	Y/H	40	Wdr59	ENSMUST00000034437.7:c.118T>C	ENSMUSP00000034437.7:p.Tyr40His	H-2-Kb	9	4	8	LSGRRFLHI	LSGRRFLYI	SMMPMBEC	269.308	294.612	1.094	189	0.122	326.091	405.846	1.245	419.85	276.25	493.2	412.7	391.8411118	375.9326101	294.6117067	269.3084622	M7	-0.214285714	0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.125	189	33	0	0	8qE1	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	0.569792378	sgMsh2	cell line
chr8	86527358	86527358	TA	T	ENSMUST00000131423.7	5	ENSMUSG00000036872	FS	F/X	932	Abcc12	ENSMUST00000131423.7:c.2796del	ENSMUSP00000122402.1:p.Phe932LeufsTer8	H-2-Kb	9	8	4	QQFLWWCLF	NA	SMM	208.502	NA	NA	118	0.212	339.211	NA	NA	NA	364.19	NA	826.8	NA	208.5018919	NA	314.2317036	M7	1.985714286	1.985714286	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.206	118	0	0	NA	8qC3	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.939017839	sgMsh2	cell line
chr8	91220227	91220227	G	A	ENSMUST00000047783.13	1	ENSMUSG00000033282	missense	H/Y	1249	Rpgrip1l	ENSMUST00000047783.13:c.3745C>T	ENSMUSP00000042702.7:p.His1249Tyr	H-2-Kb	9	5	7	VTVEALYAL	VTVEALHAL	NetMHCpan	344.5	439.4	1.275	191	0.178	475.124	773.172	1.627	789.32	381.25	439.4	344.5	757.0246132	568.9970306	962.1659863	803.9888022	M7	1.514285714	1.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.19	191	17	1	0.058823529	8qC4	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.866084414	sgMsh2	cell line
chr8	111504457	111504457	A	G	ENSMUST00000034437.7	1	ENSMUSG00000031959	missense	Y/H	40	Wdr59	ENSMUST00000034437.7:c.118T>C	ENSMUSP00000034437.7:p.Tyr40His	H-2-Kb	9	7	5	RRFLHIVNL	RRFLYIVNL	NetMHCpan	322.2	193.1	0.599	189	0.122	490.433	359.657	0.733	288.54	439.8	193.1	322.2	440.6664633	549.6800816	430.7745129	541.0656958	M7	1.771428571	1.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.125	189	33	0	0	8qE1	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	0.569792378	sgMsh2	cell line
chr9	39772552	39772552	C	T	ENSMUST00000216458.2	5	ENSMUSG00000095903	missense	V/M	83	Olfr968	ENSMUST00000216458.2:c.247G>A	ENSMUSP00000148969.1:p.Val83Met	H-2-Db	9	8	4	KMLMNFVTV	KMLVNFVTV	NetMHC	9.79	7.69	0.785	363	0.218	33.013	23.288	0.705	7.69	9.79	23.1	21.5	23.47577833	44.52664776	26.70361144	47.05112371	M7	1.814285714	1.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.224	363	0	0	NA	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr9	40978194	40978194	A	G	ENSMUST00000180384.2	1	ENSMUSG00000032021	missense	L/P	295	Crtam	ENSMUST00000180384.2:c.884T>C	ENSMUSP00000137837.1:p.Leu295Pro	H-2-Db	9	4	8	SGILLLTPV	SGILLLTLV	NetMHC	128.59	1036.29	8.059	123	0.211	206.747	925.094	4.475	1036.29	128.59	1887.2	193.9	707.3266152	219.5937625	813.8980351	245.2279683	M7	2.542857143	2.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.213	123	0	0	NA	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.970926212	sgMsh2	cell line
chr9	38877830	38877830	T	C	ENSMUST00000078289.2	NA	ENSMUSG00000064333	missense	I/T	218	Olfr926	ENSMUST00000078289.2:c.653T>C	ENSMUSP00000077405.2:p.Ile218Thr	H-2-Db	9	8	4	YAFTLTSIL	YAFILTSIL	NetMHC	302.44	508.52	1.681	350	0.191	427.2	529.423	1.239	508.52	302.44	347.5	317.9	550.3259602	541.5268566	555.3541224	536.5003381	M7	1.814285714	1.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.194	350	0	0	NA	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.884317771	sgMsh2	cell line
chr9	39873961	39873961	TA	T	ENSMUST00000215303.2	2	ENSMUSG00000094449	FS	K/X	229	Olfr972	ENSMUST00000215303.2:c.687del	ENSMUSP00000150389.1:p.Lys229AsnfsTer57	H-2-Db	9	5	7	ASILQINPL	ASILQIKST	NetMHCpan	210.7	26622.6	126.353	331	0.205	343.127	27752.058	80.88	38748.74	660.68	26622.6	210.7	28881.51695	411.7370988	16276.83646	274.5174778	M7	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;Vardict	3	0.207	331	0	0	NA	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.943576178	sgMsh2	cell line
chr9	24658629	24658629	T	C	ENSMUST00000133010.3	1	ENSMUSG00000085576	missense	M/V	343	Dpy19l2	ENSMUST00000133010.3:c.1027A>G	ENSMUSP00000132092.1:p.Met343Val	H-2-Kb	8	11	1	VALCFSNV	MALCFSNV	NetMHC	5.15	12.05	2.34	172	0.215	16.038	37.379	2.331	12.05	5.15	33	12.5	41.75802981	19.57672319	55.04780419	25.98603386	M7	1.542857143	1.542857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.206	172	0	0	NA	9qA4	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.939017839	sgMsh2	cell line
chr9	39719434	39719434	T	C	ENSMUST00000215164.2	5	ENSMUSG00000095839	missense	I/T	69	Olfr965	ENSMUST00000215164.2:c.206T>C	ENSMUSP00000150401.1:p.Ile69Thr	H-2-Kb	8	6	6	SSLSFTDL	SSLSFIDL	NetMHC	7.06	8.67	1.228	265	0.204	21.504	26.028	1.21	8.67	7.06	22.9	16.6	29.15680954	26.40827294	32.48927349	28.29697428	M7	0.657142857	0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.212	265	0	0	NA	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.966367873	sgMsh2	cell line
chr9	38877830	38877830	T	C	ENSMUST00000078289.2	NA	ENSMUSG00000064333	missense	I/T	218	Olfr926	ENSMUST00000078289.2:c.653T>C	ENSMUSP00000077405.2:p.Ile218Thr	H-2-Kb	8	6	6	ISYAFTLT	ISYAFILT	NetMHC	8.32	17.61	2.117	350	0.191	18.314	25.95	1.417	17.61	8.32	25	13.2	36.20261985	32.78989304	26.89923939	23.42825811	M7	0.7	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.194	350	0	0	NA	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.884317771	sgMsh2	cell line
chr9	37898061	37898061	T	C	ENSMUST00000086062.3	NA	ENSMUSG00000066748	missense	L/P	219	Olfr145	ENSMUST00000086062.3:c.656T>C	ENSMUSP00000083229.2:p.Leu219Pro	H-2-Kb	8	5	7	IFISYAPI	IFISYALI	NetMHC	12.51	34.39	2.749	160	0.231	18.45	49.782	2.698	34.39	12.51	60.8	31.9	51.72970479	19.53169797	47.83436356	17.36760767	M7	1.414285714	1.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.225	160	0	0	NA	9qA4	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr9	39426542	39426542	G	T	ENSMUST00000073895.3	NA	ENSMUSG00000058856	missense	H/Q	176	Olfr952	ENSMUST00000073895.3:c.528C>A	ENSMUSP00000073558.3:p.His176Gln	H-2-Kb	8	9	3	INQYFCDL	INHYFCDL	NetMHC	37.83	26.98	0.713	144	0.222	77.132	50.321	0.652	26.98	37.83	29.4	71.9	71.90183929	82.36448742	71.24263926	104.4094962	M7	-0.385714286	-0.285714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	144	0	0	NA	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr9	39873961	39873961	TA	T	ENSMUST00000215303.2	2	ENSMUSG00000094449	FS	K/X	229	Olfr972	ENSMUST00000215303.2:c.687del	ENSMUSP00000150389.1:p.Lys229AsnfsTer57	H-2-Kb	8	23	0	AAHTYQLL	NA	NetMHC	46.15	NA	NA	331	0.205	132.589	NA	NA	NA	46.15	NA	67.6	NA	197.5786438	NA	202.6469166	M7	0.1	0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.207	331	0	0	NA	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.943576178	sgMsh2	cell line
chr9	38877830	38877830	T	C	ENSMUST00000078289.2	NA	ENSMUSG00000064333	missense	I/T	218	Olfr926	ENSMUST00000078289.2:c.653T>C	ENSMUSP00000077405.2:p.Ile218Thr	H-2-Kb	8	4	8	VIISYAFT	VIISYAFI	SMMPMBEC	73.07	22.322	0.305	350	0.191	96.651	20.161	0.209	9	92.9	18	419.9	22.89496585	100.4014535	22.32235446	73.07015019	M7	1.542857143	2.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.194	350	0	0	NA	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.884317771	sgMsh2	cell line
chr9	31426949	31426949	T	C	ENSMUST00000048050.8	1	ENSMUSG00000041737	missense	T/A	245	Tmem45b	ENSMUST00000048050.8:c.733A>G	ENSMUSP00000042313.7:p.Thr245Ala	H-2-Kb	8	6	6	VYCFLARV	VYCFLTRV	NetMHCpan	104	145.5	1.399	89	0.258	344.012	994.74	2.892	319.39	115.57	145.5	104	1789.534189	626.2388407	1670.090478	572.4532166	M7	1.328571429	1.328571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.265	89	0	0	NA	9qA4	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr9	35214258	35214258	A	G	ENSMUST00000034541.11	1	ENSMUSG00000032042	missense	M/V	373	Srpr	ENSMUST00000034541.11:c.1117A>G	ENSMUSP00000034541.5:p.Met373Val	H-2-Kb	8	10	2	VVGTFSTV	VMGTFSTV	NetMHC	153.46	124.82	0.813	224	0.174	185.776	206.103	1.109	124.82	153.46	176.3	179.8	255.1173529	220.6683258	235.9065504	191.7520431	M7	1.228571429	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.181	224	215	29	0.134883721	9qA4	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.825059363	sgMsh2	cell line
chr9	39795557	39795557	CT	C	ENSMUST00000213266.1	2	ENSMUSG00000094254	FS	F/X	61	Olfr969	ENSMUST00000213266.1:c.186del	ENSMUSP00000149551.1:p.Leu63SerfsTer21	H-2-Kb	8	8	6	PMYFFSAV	PMYFFLSS	NetMHCpan	120.6	2859.6	23.711	272	0.195	174.056	2636.808	15.149	7386.46	170.39	2859.6	120.6	1468.047136	177.7215122	2414.015198	232.6697911	M7	1.628571429	1.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.198	272	0	0	NA	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.902551127	sgMsh2	cell line
chr9	39873961	39873961	TA	T	ENSMUST00000215303.2	2	ENSMUSG00000094449	FS	K/X	229	Olfr972	ENSMUST00000215303.2:c.687del	ENSMUSP00000150389.1:p.Lys229AsnfsTer57	H-2-Kb	8	6	6	SILQINPL	SILQIKST	NetMHC	181.44	24299.42	133.925	331	0.205	244.103	20486.719	83.927	24299.42	181.44	17328.4	232.5	23645.03711	259.2626764	13144.37679	255.7054591	M7	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;Vardict	3	0.207	331	0	0	NA	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.943576178	sgMsh2	cell line
chr9	39258136	39258136	A	C	ENSMUST00000076903.2	NA	ENSMUSG00000063380	missense	C/G	182	Olfr945	ENSMUST00000076903.2:c.544T>G	ENSMUSP00000076169.2:p.Cys182Gly	H-2-Kb	8	6	6	INHYFGDI	INHYFCDI	NetMHCpan	102	90.9	0.891	214	0.458	276.289	313.213	1.134	217.41	182.12	90.9	102	466.380088	456.8146256	409.0157201	370.458872	M7	-0.657142857	-0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.467	214	0	0	NA	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	2	1	sgMsh2	cell line
chr9	26825146	26825146	A	G	ENSMUST00000210274.1	1	ENSMUSG00000031966	missense	M/T	540	Glb1l3	ENSMUST00000210274.1:c.1619T>C	ENSMUSP00000147979.1:p.Met540Thr	H-2-Kb	8	10	2	KTSFFKRL	KMSFFKRL	NetMHCpan	88.8	76.6	0.863	154	0.24	200.663	286.637	1.428	179.96	182.68	76.6	88.8	422.4156501	232.6697911	393.3145385	218.6452264	M7	-0.071428571	-0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.247	154	0	0	NA	9qA4	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr9	18945178	18945178	CT	C	ENSMUST00000218385.1	5	ENSMUSG00000095957	FS	F/X	177	Olfr832	ENSMUST00000218385.1:c.535del	ENSMUSP00000151834.1:p.Cys179ValfsTer24	H-2-Kb	8	14	0	NWLIFSSL	NA	NetMHC	230.76	NA	NA	193	0.269	292.404	NA	NA	NA	230.76	NA	280.2	NA	318.9627742	NA	304.6070846	M7	1.771428571	1.771428571	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;Vardict	3	0.266	193	0	0	NA	9qA2	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr9	38976449	38976449	A	G	ENSMUST00000216238.2	2	ENSMUSG00000058515	missense	M/V	258	Olfr933	ENSMUST00000216238.2:c.772A>G	ENSMUSP00000149292.2:p.Met258Val	H-2-Kb	8	8	4	ITFVYFKP	ITFMYFKP	SMMPMBEC	66.335	69.301	1.045	217	0.226	122.729	100.426	0.818	287.56	306.34	112.8	171.2	88.05215715	74.25744462	69.30107956	66.33458249	M7	0.328571429	1.2	FALSE	FALSE	TRUE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.232	217	0	0	NA	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr8	124030388	124030388	T	C	ENSMUST00000034457.8	1	ENSMUSG00000031976	missense	C/R	945	Urb2	ENSMUST00000034457.8:c.2833T>C	ENSMUSP00000034457.8:p.Cys945Arg	H-2-Kb	8	8	4	LVKRYRLL	LVKCYRLL	SMMPMBEC	282.319	617.647	2.188	185	0.184	362.76	684.41	1.887	1193.58	345.62	499.5	379.9	751.173053	380.8377582	617.6465217	282.3189304	M7	-0.342857143	-0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.174	185	45	6	0.133333333	8qE2	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	0.79315099	sgMsh2	cell line
chr9	38728677	38728677	T	C	ENSMUST00000001544.11	1	ENSMUSG00000023186	missense	V/A	407	Vwa5a	ENSMUST00000001544.11:c.1220T>C	ENSMUSP00000001544.5:p.Val407Ala	H-2-Kb	8	6	6	SVIREAKL	SVIREVKL	SMMPMBEC	243.075	701.035	2.884	151	0.238	376.099	942.164	2.505	1317.77	366.95	770.7	434	1113.627636	385.2476516	701.0354824	243.0748352	M7	0.342857143	0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.24	151	76	24	0.315789474	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr9	19713420	19713420	G	A	ENSMUST00000212013.3	3	ENSMUSG00000094678	missense	V/I	198	Olfr857	ENSMUST00000212013.3:c.592G>A	ENSMUSP00000148617.3:p.Val198Ile	H-2-Kb	8	11	1	IIFLLGII	VIFLLGII	NetMHCpan	270.8	251.1	0.927	265	0.023	337.866	331.583	0.981	367.29	426.64	251.1	270.8	318.2291802	339.4220093	344.9371732	336.3101696	M7	3.357142857	3.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.027	265	0	0	NA	9qA3	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.123075154	sgMsh2	cell line
chr9	8901181	8901181	TA	T	ENSMUST00000189181.6	1	ENSMUSG00000031870	FS	L/X	238	Pgr	ENSMUST00000189181.6:c.716del	ENSMUSP00000140124.1:p.Lys239ArgfsTer73	H-2-Kb	8	45	0	KIHGFLLL	NA	NetMHCpan	154.8	NA	NA	26	0.269	279.731	NA	NA	NA	471.67	NA	154.8	NA	279.7306149	NA	279.7306149	M7	2.157142857	2.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.296	26	0	0	NA	9qA1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr8	122813653	122813653	A	G	ENSMUST00000015160.5	5	ENSMUSG00000015016	missense	D/G	530	Acsf3	ENSMUST00000015160.5:c.1589A>G	ENSMUSP00000015160.5:p.Asp530Gly	H-2-Kb	8	5	7	HSLSHGGL	HSLSHGDL	SMMPMBEC	233.206	636.414	2.729	103	0.223	416.617	1748.884	4.198	2775.43	567.32	4133.4	1087.4	722.337231	265.9132635	636.4144033	233.2061504	M7	0.285714286	0.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.221	103	30	4	0.133333333	8qE1	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr9	4664969	4664969	C	CA	ENSMUST00000027020.12	5	ENSMUSG00000025892	FS	-/X	95-96	Gria4	ENSMUST00000027020.12:c.285dup	ENSMUSP00000027020.6:p.Gly96TrpfsTer4	H-2-Kb	8	7	6	VFAIFWTL	VFAIFGLY	SMM	69.781	2628.694	37.67	87	0.172	175.11	4715.847	26.931	7797.57	572.28	6803	236	2628.693795	69.78145169	2386.382195	114.219433	M7	2.014285714	2.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.187	87	0	0	NA	9qA1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.852409397	sgMsh2	cell line
chr9	39873961	39873961	TA	T	ENSMUST00000215303.2	2	ENSMUSG00000094449	FS	K/X	229	Olfr972	ENSMUST00000215303.2:c.687del	ENSMUSP00000150389.1:p.Lys229AsnfsTer57	H-2-Kb	8	55	0	CPLYFIPL	NA	SMM	129.939	NA	NA	331	0.205	300.671	NA	NA	NA	688.28	NA	422.8	NA	129.9391436	NA	178.5418375	M7	1.485714286	1.485714286	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.207	331	0	0	NA	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.943576178	sgMsh2	cell line
chr9	31327436	31327436	T	C	ENSMUST00000074510.3	5	ENSMUSG00000042496	missense	I/T	159	Prdm10	ENSMUST00000074510.3:c.476T>C	ENSMUSP00000074104.3:p.Ile159Thr	H-2-Kb	8	8	4	VLYTDRFL	VLYIDRFL	SMMPMBEC	165.097	182.701	1.107	89	0.258	351.288	303.271	0.863	810.78	784.8	421.3	528.5	185.2422298	174.0764414	182.7006111	165.0973111	M7	0.057142857	0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.267	89	11	3	0.272727273	9qA4	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr9	31426949	31426949	T	C	ENSMUST00000048050.8	1	ENSMUSG00000041737	missense	T/A	245	Tmem45b	ENSMUST00000048050.8:c.733A>G	ENSMUSP00000042313.7:p.Thr245Ala	H-2-Kb	9	5	7	LVYCFLARV	LVYCFLTRV	NetMHC	14.04	29.65	2.112	89	0.258	37.647	48.836	1.297	29.65	14.04	37.4	30.2	60.27122243	45.09309038	66.41252616	48.78092149	M7	1.328571429	2.514285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.265	89	0	0	NA	9qA4	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr9	18945178	18945178	CT	C	ENSMUST00000218385.1	5	ENSMUSG00000095957	FS	F/X	177	Olfr832	ENSMUST00000218385.1:c.535del	ENSMUSP00000151834.1:p.Cys179ValfsTer24	H-2-Kb	9	13	1	VNWLIFSSL	NA	NetMHCpan	13.8	NA	NA	193	0.269	37.802	NA	NA	NA	16.16	NA	13.8	NA	59.44427026	NA	61.69500447	M7	1.771428571	1.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.266	193	0	0	NA	9qA2	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr9	37898061	37898061	T	C	ENSMUST00000086062.3	NA	ENSMUSG00000066748	missense	L/P	219	Olfr145	ENSMUST00000086062.3:c.656T>C	ENSMUSP00000083229.2:p.Leu219Pro	H-2-Kb	9	4	8	TIFISYAPI	TIFISYALI	NetMHC	19.03	40.79	2.143	160	0.231	44.365	68.062	1.534	40.79	19.03	39.9	20.3	111.4576803	87.5205423	95.33447955	68.43054518	M7	1.414285714	1.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.225	160	0	0	NA	9qA4	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr8	124028714	124028714	T	C	ENSMUST00000034457.8	1	ENSMUSG00000031976	missense	F/L	387	Urb2	ENSMUST00000034457.8:c.1159T>C	ENSMUSP00000034457.8:p.Phe387Leu	H-2-Kb	9	9	3	TQLHFYRRV	TQFHFYRRV	NetMHC	29.79	12.91	0.433	182	0.159	159.586	53.794	0.337	12.91	29.79	11.9	56.6	96.18558706	269.8422814	94.67820161	262.57296	M7	-0.385714286	-0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.159	182	40	12	0.3	8qE2	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	0.724775905	sgMsh2	cell line
chr9	38877830	38877830	T	C	ENSMUST00000078289.2	NA	ENSMUSG00000064333	missense	I/T	218	Olfr926	ENSMUST00000078289.2:c.653T>C	ENSMUSP00000077405.2:p.Ile218Thr	H-2-Kb	9	4	8	VIISYAFTL	VIISYAFIL	NetMHCpan	24.7	68.8	2.785	350	0.191	81.467	135.846	1.668	144.31	48.88	68.8	24.7	127.382568	114.0538632	210.9842323	178.7516256	M7	1.442857143	2.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.194	350	0	0	NA	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.884317771	sgMsh2	cell line
chr9	8901181	8901181	TA	T	ENSMUST00000189181.6	1	ENSMUSG00000031870	FS	L/X	238	Pgr	ENSMUST00000189181.6:c.716del	ENSMUSP00000140124.1:p.Lys239ArgfsTer73	H-2-Kb	9	7	6	AAPLLRANL	AAPLLKSKP	NetMHC	90.54	28823.73	318.354	26	0.269	492.823	19343.288	39.25	28823.73	90.54	28257.4	198.4	6685.132201	787.2451613	10429.17608	875.4876014	M7	0.514285714	0.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.296	26	0	0	NA	9qA1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr9	39795557	39795557	CT	C	ENSMUST00000213266.1	2	ENSMUSG00000094254	FS	F/X	61	Olfr969	ENSMUST00000213266.1:c.186del	ENSMUSP00000149551.1:p.Leu63SerfsTer21	H-2-Kb	9	7	7	TPMYFFSAV	TPMYFFLSS	NetMHC	139.15	5874.91	42.22	272	0.195	398.204	2540.476	6.38	5874.91	139.15	2912	226.1	1349.304597	570.3087043	2168.952295	671.8154697	M7	1.628571429	1.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.198	272	0	0	NA	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.902551127	sgMsh2	cell line
chr9	44106252	44106252	A	G	ENSMUST00000034654.8	1	ENSMUSG00000034739	missense	S/G	514	Mfrp	ENSMUST00000034654.8:c.1540A>G	ENSMUSP00000034654.7:p.Ser514Gly	H-2-Kb	9	4	8	RGYKSLTGL	RGYKSLTSL	NetMHC	175.39	239.04	1.363	108	0.185	399.879	468.725	1.172	239.04	175.39	160.8	177.3	698.4092778	622.4579241	703.4771574	692.2293355	M7	0.071428571	0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.211	108	1	1	1	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.961809534	sgMsh2	cell line
chr9	39873961	39873961	TA	T	ENSMUST00000215303.2	2	ENSMUSG00000094449	FS	K/X	229	Olfr972	ENSMUST00000215303.2:c.687del	ENSMUSP00000150389.1:p.Lys229AsnfsTer57	H-2-Kb	9	54	0	KCPLYFIPL	NA	NetMHCpan	54.1	NA	NA	331	0.205	209.432	NA	NA	NA	181.59	NA	54.1	NA	297.2418804	NA	237.2739171	M7	1.485714286	1.485714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.207	331	0	0	NA	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.943576178	sgMsh2	cell line
chr9	39873961	39873961	TA	T	ENSMUST00000215303.2	2	ENSMUSG00000094449	FS	K/X	229	Olfr972	ENSMUST00000215303.2:c.687del	ENSMUSP00000150389.1:p.Lys229AsnfsTer57	H-2-Kb	9	23	0	AAHTYQLLL	NA	NetMHCpan	152.4	NA	NA	331	0.205	271.062	NA	NA	NA	184.76	NA	152.4	NA	357.3633412	NA	360.7862685	M7	0.385714286	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.207	331	0	0	NA	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.943576178	sgMsh2	cell line
chr9	39426542	39426542	G	T	ENSMUST00000073895.3	NA	ENSMUSG00000058856	missense	H/Q	176	Olfr952	ENSMUST00000073895.3:c.528C>A	ENSMUSP00000073558.3:p.His176Gln	H-2-Kb	9	9	3	INQYFCDLF	INHYFCDLF	NetMHC	190.01	129.13	0.68	144	0.222	485.909	238.502	0.491	129.13	190.01	365.4	979.6	223.9288243	455.1033161	253.0754397	516.713728	M7	0.514285714	0.514285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	144	0	0	NA	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr9	39772552	39772552	C	T	ENSMUST00000216458.2	5	ENSMUSG00000095903	missense	V/M	83	Olfr968	ENSMUST00000216458.2:c.247G>A	ENSMUSP00000148969.1:p.Val83Met	H-2-Kb	9	11	1	MNFVTVQNI	VNFVTVQNI	NetMHCpan	157.2	68.9	0.438	363	0.218	430.956	163.893	0.38	68.56	198	68.9	157.2	258.8868552	663.9112074	356.6563823	923.1026548	M7	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.224	363	0	0	NA	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr9	24658629	24658629	T	C	ENSMUST00000133010.3	1	ENSMUSG00000085576	missense	M/V	343	Dpy19l2	ENSMUST00000133010.3:c.1027A>G	ENSMUSP00000132092.1:p.Met343Val	H-2-Kb	9	5	7	VHKKHYVAL	VHKKHYMAL	SMMPMBEC	109.207	121.689	1.114	172	0.215	179.831	135.848	0.755	102.83	201.86	214.2	272.1	150.006473	157.8010905	121.6886295	109.2068801	M7	-0.357142857	-0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.206	172	0	0	NA	9qA4	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.939017839	sgMsh2	cell line
chr9	37898061	37898061	T	C	ENSMUST00000086062.3	NA	ENSMUSG00000066748	missense	L/P	219	Olfr145	ENSMUST00000086062.3:c.656T>C	ENSMUSP00000083229.2:p.Leu219Pro	H-2-Kb	9	5	7	IFISYAPIL	IFISYALIL	NetMHCpan	118.3	236.4	1.998	160	0.231	232.059	330.28	1.423	451.36	235.5	236.4	118.3	274.859024	228.6177783	385.7003207	331.3217908	M7	1.557142857	1.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.225	160	0	0	NA	9qA4	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr9	38848375	38848375	A	G	ENSMUST00000217350.1	5	ENSMUSG00000062103	missense	N/S	87	Olfr924	ENSMUST00000217350.1:c.260A>G	ENSMUSP00000149849.1:p.Asn87Ser	H-2-Kb	9	11	1	STISFLECM	NTISFLECM	NetMHCpan	236.1	1677.4	7.105	271	0.21	284.712	1653.817	5.809	3190.97	240.49	1677.4	236.1	1419.416992	328.9349344	1630.234201	406.6773641	M7	1.6	1.6	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.205	271	0	0	NA	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.9344595	sgMsh2	cell line
chr9	39258136	39258136	A	C	ENSMUST00000076903.2	NA	ENSMUSG00000063380	missense	C/G	182	Olfr945	ENSMUST00000076903.2:c.544T>G	ENSMUSP00000076169.2:p.Cys182Gly	H-2-Kb	9	5	7	VINHYFGDI	VINHYFCDI	NetMHC	248.12	402.57	1.622	214	0.458	313.678	336.411	1.072	402.57	248.12	262.7	378.9	382.9217191	379.4110717	289.9011913	248.4562923	M7	-0.657142857	0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.467	214	0	0	NA	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	2	1	sgMsh2	cell line
chr9	39258136	39258136	A	C	ENSMUST00000076903.2	NA	ENSMUSG00000063380	missense	C/G	182	Olfr945	ENSMUST00000076903.2:c.544T>G	ENSMUSP00000076169.2:p.Cys182Gly	H-2-Kb	9	6	6	INHYFGDIL	INHYFCDIL	NetMHCpan	249.4	114.5	0.459	214	0.458	350.747	161.261	0.46	107.57	280.66	114.5	249.4	208.0223508	420.8332054	225.553723	456.2995075	M7	0.385714286	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.467	214	0	0	NA	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	2	1	sgMsh2	cell line
chr9	39873961	39873961	TA	T	ENSMUST00000215303.2	2	ENSMUSG00000094449	FS	K/X	229	Olfr972	ENSMUST00000215303.2:c.687del	ENSMUSP00000150389.1:p.Lys229AsnfsTer57	H-2-Kb	9	5	7	ASILQINPL	ASILQIKST	NetMHCpan	248.1	11342.7	45.718	331	0.205	319.911	8922.822	27.892	15545.63	284.1	11342.7	248.1	6502.943789	355.7214058	5770.985724	411.386466	M7	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;Vardict	3	0.207	331	0	0	NA	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.943576178	sgMsh2	cell line
chr9	39772552	39772552	C	T	ENSMUST00000216458.2	5	ENSMUSG00000095903	missense	V/M	83	Olfr968	ENSMUST00000216458.2:c.247G>A	ENSMUSP00000148969.1:p.Val83Met	H-2-Kb	9	5	7	IIPKMLMNF	IIPKMLVNF	NetMHC	284.4	468.09	1.646	363	0.218	497.874	564.788	1.134	468.09	284.4	550	444.8	579.5754752	550.9472251	638.631006	711.6230389	M7	0.2	1.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.224	363	0	0	NA	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr9	38728677	38728677	T	C	ENSMUST00000001544.11	1	ENSMUSG00000023186	missense	V/A	407	Vwa5a	ENSMUST00000001544.11:c.1220T>C	ENSMUSP00000001544.5:p.Val407Ala	H-2-Kb	9	5	7	FSVIREAKL	FSVIREVKL	SMMPMBEC	225.035	304.965	1.355	151	0.238	311.161	550.888	1.77	617.48	286.5	1285.3	628	484.2950164	335.8226621	304.9650004	225.0349638	M7	0.342857143	0.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.24	151	76	24	0.315789474	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr9	38877830	38877830	T	C	ENSMUST00000078289.2	NA	ENSMUSG00000064333	missense	I/T	218	Olfr926	ENSMUST00000078289.2:c.653T>C	ENSMUSP00000077405.2:p.Ile218Thr	H-2-Kb	9	6	6	ISYAFTLTS	ISYAFILTS	SMM	114.844	113.792	0.991	350	0.191	154.609	145.943	0.944	348.34	311.88	116.8	119	113.7915466	114.8444468	175.0854271	190.2172944	M7	0.7	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.194	350	0	0	NA	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.884317771	sgMsh2	cell line
chr8	124030388	124030388	T	C	ENSMUST00000034457.8	1	ENSMUSG00000031976	missense	C/R	945	Urb2	ENSMUST00000034457.8:c.2833T>C	ENSMUSP00000034457.8:p.Cys945Arg	H-2-Kb	9	7	5	FLVKRYRLL	FLVKCYRLL	NetMHC	330.36	1005.73	3.044	185	0.184	448.134	1220.639	2.724	1005.73	330.36	1210.3	459.5	1312.532301	472.1826226	1230.977174	436.7671833	M7	-0.342857143	-0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.174	185	45	6	0.133333333	8qE2	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	0.79315099	sgMsh2	cell line
chr9	39426542	39426542	G	T	ENSMUST00000073895.3	NA	ENSMUSG00000058856	missense	H/Q	176	Olfr952	ENSMUST00000073895.3:c.528C>A	ENSMUSP00000073558.3:p.His176Gln	H-2-Kb	9	8	4	KINQYFCDL	KINHYFCDL	NetMHCpan	305.8	312.7	1.023	144	0.222	468.801	471.489	1.006	457.41	357.84	312.7	305.8	590.3505878	711.3936757	485.5679351	579.7623384	M7	-0.385714286	-0.285714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	144	0	0	NA	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr9	39772552	39772552	C	T	ENSMUST00000216458.2	5	ENSMUSG00000095903	missense	V/M	83	Olfr968	ENSMUST00000216458.2:c.247G>A	ENSMUSP00000148969.1:p.Val83Met	H-2-Kb	9	8	4	KMLMNFVTV	KMLVNFVTV	NetMHCpan	295.6	432.9	1.464	363	0.218	403.171	410.574	1.018	382.76	358.37	432.9	295.6	388.2486909	457.2039776	469.0833305	447.9711029	M7	1.814285714	1.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.224	363	0	0	NA	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr9	38877830	38877830	T	C	ENSMUST00000078289.2	NA	ENSMUSG00000064333	missense	I/T	218	Olfr926	ENSMUST00000078289.2:c.653T>C	ENSMUSP00000077405.2:p.Ile218Thr	H-2-Kb	9	8	4	YAFTLTSIL	YAFILTSIL	NetMHCpan	225.9	241.6	1.069	350	0.191	371.69	335.393	0.902	407.04	376.85	241.6	225.9	314.1304236	366.5303993	356.6563823	417.1094219	M7	1.814285714	1.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.194	350	0	0	NA	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.884317771	sgMsh2	cell line
chr9	27319526	27319526	A	G	ENSMUST00000133213.2	5	ENSMUSG00000034275	missense	D/G	275	Igsf9b	ENSMUST00000133213.2:c.824A>G	ENSMUSP00000117017.1:p.Asp275Gly	H-2-Kb	9	6	6	VYFQNGLKL	VYFQNDLKL	NetMHCpan	424.6	721.3	1.699	130	0.223	494.857	455.569	0.921	479.51	521.71	721.3	424.6	431.6283877	635.4918716	329.7995054	468.0044688	M7	-0.128571429	0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.239	130	0	0	NA	9qA4	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr9	38976449	38976449	A	G	ENSMUST00000216238.2	2	ENSMUSG00000058515	missense	M/V	258	Olfr933	ENSMUST00000216238.2:c.772A>G	ENSMUSP00000149292.2:p.Met258Val	H-2-Kb	9	8	4	ITFVYFKPP	ITFMYFKPP	SMM	70.163	82.625	1.178	217	0.226	165.228	121.626	0.736	469.99	525.32	139.2	221.5	82.62471986	70.16329886	104.0518964	108.9557112	M7	0.2	1.2	FALSE	FALSE	TRUE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.232	217	0	0	NA	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr9	38877830	38877830	T	C	ENSMUST00000078289.2	NA	ENSMUSG00000064333	missense	I/T	218	Olfr926	ENSMUST00000078289.2:c.653T>C	ENSMUSP00000077405.2:p.Ile218Thr	H-2-Kb	10	6	6	ISYAFTLTSI	ISYAFILTSI	NetMHCpan	22.8	25.1	1.101	350	0.191	444.623	466.58	1.049	45.33	40.34	25.1	22.8	887.8303764	883.7511664	893.0175625	848.9067757	M7	1.528571429	1.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.194	350	0	0	NA	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.884317771	sgMsh2	cell line
chr9	80136750	80136750	GA	G	ENSMUST00000165607.8	1	ENSMUSG00000034252	FS	K/X	888	Senp6	ENSMUST00000165607.8:c.2672del	ENSMUSP00000126777.2:p.Asn891IlefsTer44	H-2-Db	9	42	0	ASGMNASVL	NA	NetMHC	36.8	NA	NA	92	0.239	141.593	NA	NA	NA	36.8	NA	75.9	NA	216.0827011	NA	207.2860138	M7	1	1	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2391	92	185	15	0.081081081	9qE1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr9	105300330	105300330	C	T	ENSMUST00000038648.10	1	ENSMUSG00000035032	missense	V/M	241	Nek11	ENSMUST00000038648.10:c.721G>A	ENSMUSP00000038611.4:p.Val241Met	H-2-Kb	8	6	6	SSFLSMVL	SSFLSVVL	NetMHC	39.45	100.21	2.54	80	0.05	46.902	73.239	1.562	100.21	39.45	68.9	43.6	64.97405923	50.2041941	77.57825382	69.46083504	M7	2.128571429	2.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.052	80	0	0	NA	9qF1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.237033629	sgMsh2	cell line
chr9	57612601	57612601	G	A	ENSMUST00000093832.10	1	ENSMUSG00000056271	missense	T/I	251	Lman1l	ENSMUST00000093832.10:c.752C>T	ENSMUSP00000091352.4:p.Thr251Ile	H-2-Kb	8	7	5	LSFLIFSL	LSFLTFSL	NetMHCpan	36.2	25.9	0.715	96	0.229	64.782	51.031	0.788	19.37	47.2	25.9	36.2	100.8648855	123.5207728	76.16229111	82.36448742	M7	2.3	2.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.244	96	2	1	0.5	9qB	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr9	91364112	91364112	GA	G	ENSMUST00000034927.12	1	ENSMUSG00000032368	FS	F/X	302	Zic1	ENSMUST00000034927.12:c.906del	ENSMUSP00000034927.6:p.Cys304AlafsTer78	H-2-Kb	8	17	0	AAARFSRV	NA	NetMHC	63.39	NA	NA	123	0.228	159.488	NA	NA	NA	63.39	NA	145.3	NA	173.6760767	NA	202.6469166	M7	0.114285714	0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.228	123	0	0	NA	9qE3.2	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr9	45183178	45183178	C	A	ENSMUST00000034599.14	1	ENSMUSG00000032091	missense	S/I	145	Tmprss4	ENSMUST00000034599.14:c.434G>T	ENSMUSP00000034599.8:p.Ser145Ile	H-2-Kb	8	11	1	IQPAFRAV	SQPAFRAV	NetMHC	87.31	206.86	2.369	101	0.178	159.809	320.511	2.006	206.86	87.31	724.3	373.3	261.0597994	138.5925865	379.9618556	181.0256018	M7	0.142857143	0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.172	101	0	0	NA	9qA5.2	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.784034312	sgMsh2	cell line
chr9	67395486	67395486	G	A	ENSMUST00000040025.13	5	ENSMUSG00000052698	missense	R/W	68	Tln2	ENSMUST00000040025.13:c.202C>T	ENSMUSP00000039633.7:p.Arg68Trp	H-2-Kb	8	11	1	WTLDYYML	RTLDYYML	SMM	87.245	64.676	0.741	265	0.223	95.715	53.288	0.557	30.87	97.08	41.9	189.6	64.67553055	87.24489012	81.98605697	94.34958625	M7	0.385714286	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.223	265	0	0	NA	9qC	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr9	91364112	91364112	GA	G	ENSMUST00000034927.12	1	ENSMUSG00000032368	FS	F/X	302	Zic1	ENSMUST00000034927.12:c.906del	ENSMUSP00000034927.6:p.Cys304AlafsTer78	H-2-Kb	8	68	0	TSPTFARC	NA	NetMHC	99.41	NA	NA	123	0.228	112.143	NA	NA	NA	99.41	NA	411.3	NA	106.5957771	NA	117.6901185	M7	-0.071428571	-0.071428571	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.228	123	0	0	NA	9qE3.2	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr9	103343982	103343982	T	C	ENSMUST00000035164.9	1	ENSMUSG00000032555	missense	S/P	1269	Topbp1	ENSMUST00000035164.9:c.3805T>C	ENSMUSP00000035164.3:p.Ser1269Pro	H-2-Kb	8	6	6	YVFQMPSL	YVFQMSSL	NetMHCpan	89.7	53.6	0.598	71	0.197	134.991	77.001	0.57	65.95	140.12	53.6	89.7	95.66211974	137.3219621	88.05215715	132.6600022	M7	0.971428571	0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.19	71	83	16	0.192771084	9qF1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.866084414	sgMsh2	cell line
chr9	95461431	95461432	TTA	T	ENSMUST00000079659.11	1	ENSMUSG00000032407	FS	HK/QX	1021-1022	U2surp	ENSMUST00000079659.11:c.3063_3064del	ENSMUSP00000078602.5:p.His1021GlnfsTer28	H-2-Kb	8	19	0	LTYISKML	NA	NetMHCpan	196	NA	NA	116	0.25	293.304	NA	NA	NA	289.62	NA	196	NA	296.9887511	NA	302.5101842	M7	0.5	0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.255	116	212	42	0.198113208	9qE3.3	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr9	49003032	49003032	G	A	ENSMUST00000047349.7	1	ENSMUSG00000032267	missense	A/T	104	Usp28	ENSMUST00000047349.7:c.310G>A	ENSMUSP00000047467.5:p.Ala104Thr	H-2-Kb	8	11	1	TAIALSLL	AAIALSLL	NetMHCpan	275.2	320.2	1.164	242	0.041	381.823	468.182	1.226	366.54	312.06	320.2	275.2	569.823033	451.5855118	607.7710368	477.2434758	M7	2.671428571	2.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.046	242	24	0	0	9qA5.3	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.209683595	sgMsh2	cell line
chr9	64212673	64212673	C	A	ENSMUST00000005066.8	1	ENSMUSG00000004936	missense	V/L	117	Map2k1	ENSMUST00000005066.8:c.349G>T	ENSMUSP00000005066.8:p.Val117Leu	H-2-Kb	8	5	7	IIRELQLL	IIRELQVL	SMM	330.933	442.323	1.337	72	0.25	423.71	939.42	2.217	1585.88	379.92	1226.1	467.5	442.3234863	330.9329418	652.7396586	480.5515695	M7	0.628571429	0.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.265	72	238	67	0.281512605	9qC	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr9	76493030	76493030	G	T	ENSMUST00000183437.7	1	ENSMUSG00000032358	missense	H/N	264	Fam83b	ENSMUST00000183437.7:c.790C>A	ENSMUSP00000139354.1:p.His264Asn	H-2-Kb	8	5	7	VQIITGNL	VQIITGHL	SMMPMBEC	281.022	451.586	1.607	136	0.25	322.914	557.823	1.727	625.94	390.45	586.3	355.6	529.3464441	290.2284617	451.5855118	281.0217928	M7	0.671428571	0.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.248	136	2	1	0.5	9qD	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr9	106978609	106978609	T	C	ENSMUST00000044532.10	2	ENSMUSG00000039716	missense	T/A	784	Dock3	ENSMUST00000044532.10:c.2350A>G	ENSMUSP00000047652.4:p.Thr784Ala	H-2-Kb	8	8	4	LLFAQAAL	LLFTQAAL	SMM	167.009	163.584	0.979	132	0.295	288.366	242.888	0.842	430.98	530.1	312.1	386.3	163.5836898	167.0090478	173.6760767	190.4320313	M7	1.757142857	1.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.292	132	0	0	NA	9qF1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr9	88462325	88462325	A	C	ENSMUST00000173801.7	1	ENSMUSG00000032423	missense	S/A	357	Syncrip	ENSMUST00000173801.7:c.1069T>G	ENSMUSP00000133649.1:p.Ser357Ala	H-2-Kb	8	11	1	AFSQFGKL	SFSQFGKL	SMMPMBEC	369.607	220.668	0.597	102	0.176	407.456	223.384	0.548	300.77	710.31	226.1	443.6	198.0341096	371.3128679	220.6683258	369.6068402	M7	0.114285714	0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.19	102	543	95	0.174953959	9qE3.1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.866084414	sgMsh2	cell line
chr9	59868201	59868201	A	G	ENSMUST00000136740.7	5	ENSMUSG00000039585	missense	R/G	1032	Myo9a	ENSMUST00000136740.7:c.3094A>G	ENSMUSP00000122852.1:p.Arg1032Gly	H-2-Kb	8	6	6	LQRWFGVL	LQRWFRVL	SMM	342.563	319.698	0.933	200	0.24	377.767	367.717	0.973	710.56	858.71	375.9	396	319.6980594	342.5626424	359.5340277	359.5340277	M7	0.214285714	0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.236	200	39	2	0.051282051	9qB	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr9	105418083	105418083	CA	C	ENSMUST00000085133.12	1	ENSMUSG00000032570	FS	F/X	851	Atp2c1	ENSMUST00000085133.12:c.2553del	ENSMUSP00000082220.6:p.Phe851LeufsTer7	H-2-Kb	8	4	8	TFTCFVFL	TFTCFVFF	SMM	146.467	2380.894	16.255	197	0.188	393.785	3114.872	7.91	4770.82	1201.85	3759.5	590.9	2380.893668	146.4670721	2470.244836	196.6708524	M7	2.6	2.6	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.182	197	116	6	0.051724138	9qF1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.829617702	sgMsh2	cell line
chr9	88462325	88462325	A	C	ENSMUST00000173801.7	1	ENSMUSG00000032423	missense	S/A	357	Syncrip	ENSMUST00000173801.7:c.1069T>G	ENSMUSP00000133649.1:p.Ser357Ala	H-2-Kb	9	10	2	KAFSQFGKL	KSFSQFGKL	NetMHCpan	27.2	18.8	0.691	102	0.176	109.621	81.932	0.747	30.17	57.02	18.8	27.2	133.6934098	162.2220929	138.1179106	173.8801475	M7	0.114285714	0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.19	102	543	95	0.174953959	9qE3.1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.866084414	sgMsh2	cell line
chr9	105418083	105418083	CA	C	ENSMUST00000085133.12	1	ENSMUSG00000032570	FS	F/X	851	Atp2c1	ENSMUST00000085133.12:c.2553del	ENSMUSP00000082220.6:p.Phe851LeufsTer7	H-2-Kb	9	3	9	MTFTCFVFL	MTFTCFVFF	NetMHC	62.13	426.85	6.87	197	0.188	106.964	362.117	3.385	426.85	62.13	405	69.3	319.2346324	189.282298	250.1785091	144.6272072	M7	2.6	2.6	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.182	197	116	6	0.051724138	9qF1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.829617702	sgMsh2	cell line
chr9	45946813	45946813	AT	A	ENSMUST00000114573.8	1	ENSMUSG00000034908	FS	N/X	364	Sidt2	ENSMUST00000114573.8:c.1091del	ENSMUSP00000110220.2:p.Asn364MetfsTer60	H-2-Kb	9	50	0	CALPWTAPL	NA	NetMHC	84.42	NA	NA	115	0.183	175.812	NA	NA	NA	84.42	NA	95.7	NA	255.9234019	NA	369.1900603	M7	0.657142857	0.957142857	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.171	115	87	0	0	9qA5.2	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.779475973	sgMsh2	cell line
chr9	91364112	91364112	GA	G	ENSMUST00000034927.12	1	ENSMUSG00000032368	FS	F/X	302	Zic1	ENSMUST00000034927.12:c.906del	ENSMUSP00000034927.6:p.Cys304AlafsTer78	H-2-Kb	9	16	0	LAAARFSRV	NA	NetMHC	139.71	NA	NA	123	0.228	245.072	NA	NA	NA	139.71	NA	284.4	NA	250.6744092	NA	239.4693856	M7	0.114285714	0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.228	123	0	0	NA	9qE3.2	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr9	91364112	91364112	GA	G	ENSMUST00000034927.12	1	ENSMUSG00000032368	FS	F/X	302	Zic1	ENSMUST00000034927.12:c.906del	ENSMUSP00000034927.6:p.Cys304AlafsTer78	H-2-Kb	9	77	0	ISPTRTPAL	NA	NetMHCpan	77.4	NA	NA	123	0.228	189.365	NA	NA	NA	156.27	NA	77.4	NA	244.4049514	NA	222.4590099	M7	-0.5	-0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.228	123	0	0	NA	9qE3.2	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr9	58908457	58908457	T	C	ENSMUST00000068664.6	1	ENSMUSG00000032340	missense	N/S	845	Neo1	ENSMUST00000068664.6:c.2534A>G	ENSMUSP00000063656.5:p.Asn845Ser	H-2-Kb	9	4	8	ITLKAFNSV	ITLKAFNNV	NetMHCpan	158.6	92	0.58	93	0.28	352.943	280.466	0.795	48.67	159.99	92	158.6	468.9321403	545.8961105	537.3410257	604.2963902	M7	0.628571429	0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.31	93	267	69	0.258426966	9qB	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr9	45946813	45946813	AT	A	ENSMUST00000114573.8	1	ENSMUSG00000034908	FS	N/X	364	Sidt2	ENSMUST00000114573.8:c.1091del	ENSMUSP00000110220.2:p.Asn364MetfsTer60	H-2-Kb	9	4	8	YNYGSFEMV	YNYGSFENG	NetMHC	200.42	5451.64	27.201	115	0.183	272.413	2696.233	9.898	5451.64	200.42	4325.6	270.6	1066.866308	274.2268658	938.1018664	289.2344371	M7	0.414285714	0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.171	115	87	0	0	9qA5.2	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.779475973	sgMsh2	cell line
chr9	80136750	80136750	GA	G	ENSMUST00000165607.8	1	ENSMUSG00000034252	FS	K/X	888	Senp6	ENSMUST00000165607.8:c.2672del	ENSMUSP00000126777.2:p.Asn891IlefsTer44	H-2-Kb	9	47	0	ASVLYIIQM	NA	NetMHC	227.71	NA	NA	92	0.239	259.534	NA	NA	NA	227.71	NA	259.5	NA	350.0338139	NA	259.5673122	M7	2.014285714	2.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2391	92	185	15	0.081081081	9qE1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr9	73012712	73012712	A	C	ENSMUST00000085350.10	1	ENSMUSG00000034563	missense	K/N	536	Ccpg1	ENSMUST00000085350.10:c.1608A>C	ENSMUSP00000082458.4:p.Lys536Asn	H-2-Kb	9	5	7	STFRHFNDT	STFRHFKDT	NetMHC	253.98	561.83	2.212	57	0.281	303.15	536.715	1.77	561.83	253.98	511.6	324.3	642.8505207	354.0870144	460.5215948	282.000579	M7	-1.4	-1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.265	57	108	28	0.259259259	9qD	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr9	87707833	87707833	A	T	ENSMUST00000034991.7	1	ENSMUSG00000032419	missense	Y/N	351	Tbx18	ENSMUST00000034991.7:c.1051T>A	ENSMUSP00000034991.7:p.Tyr351Asn	H-2-Kb	9	10	2	SNAFWRPSL	SYAFWRPSL	NetMHCpan	127.5	399.5	3.133	90	0.233	289.697	603.78	2.084	646.37	260.16	399.5	127.5	561.1900987	319.2346324	673.3641643	385.7003207	M7	0.085714286	0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.236	90	0	0	NA	9qE3.1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr9	59539836	59539836	C	T	ENSMUST00000026262.7	1	ENSMUSG00000025232	missense	T/I	38	Hexa	ENSMUST00000026262.7:c.113C>T	ENSMUSP00000026262.6:p.Thr38Ile	H-2-Kb	9	4	8	QTYHRRYIL	QTYHRRYTL	SMM	132.773	118.88	0.895	67	0.254	225.195	135.595	0.602	130.49	260.61	140.7	301.6	118.8803295	132.7730709	160.7866549	189.7798067	M7	-0.928571429	-0.928571429	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.271	67	86	13	0.151162791	9qB	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr9	95461431	95461432	TTA	T	ENSMUST00000079659.11	1	ENSMUSG00000032407	FS	HK/QX	1021-1022	U2surp	ENSMUST00000079659.11:c.3063_3064del	ENSMUSP00000078602.5:p.His1021GlnfsTer28	H-2-Kb	9	17	0	QTLTYISKM	NA	NetMHC	284.56	NA	NA	116	0.25	417.721	NA	NA	NA	284.56	NA	298.1	NA	586.2866429	NA	537.3410257	M7	0.5	0.5	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.255	116	212	42	0.198113208	9qE3.3	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr9	95461431	95461432	TTA	T	ENSMUST00000079659.11	1	ENSMUSG00000032407	FS	HK/QX	1021-1022	U2surp	ENSMUST00000079659.11:c.3063_3064del	ENSMUSP00000078602.5:p.His1021GlnfsTer28	H-2-Kb	9	20	0	TYISKMLSL	NA	NetMHC	321.47	NA	NA	116	0.25	428.57	NA	NA	NA	321.47	NA	410.2	NA	467.8536263	NA	446.9407979	M7	1.214285714	1.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.255	116	212	42	0.198113208	9qE3.3	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr9	58255017	58255017	A	G	ENSMUST00000034883.6	1	ENSMUSG00000032333	missense	I/V	73	Stoml1	ENSMUST00000034883.6:c.217A>G	ENSMUSP00000034883.5:p.Ile73Val	H-2-Kb	9	11	1	VSGWFALKI	ISGWFALKI	NetMHCpan	296.6	290.8	0.98	67	0.179	412.576	531.145	1.287	471.75	379.24	290.8	296.6	778.2336405	528.5791156	590.540925	445.9128626	M7	1.1	1.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.203	67	19	2	0.105263158	9qB	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.925342822	sgMsh2	cell line
chr9	108563479	108563479	A	G	ENSMUST00000081111.13	1	ENSMUSG00000062867	missense	K/R	293	Impdh2	ENSMUST00000081111.13:c.878A>G	ENSMUSP00000079888.8:p.Lys293Arg	H-2-Kb	9	7	5	YIKERYPSL	YIKEKYPSL	SMMPMBEC	191.977	301.474	1.57	237	0.257	279.752	401.364	1.435	594.46	397.74	453.5	326.1	349.2287585	233.4049166	301.4740949	191.9773533	M7	-1.685714286	-1.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.256	237	246	51	0.207317073	9qF2	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chr9	56886067	56886067	A	T	ENSMUST00000035661.6	1	ENSMUSG00000032911	missense	N/I	362	Cspg4	ENSMUST00000035661.6:c.1085A>T	ENSMUSP00000038909.5:p.Asn362Ile	H-2-Kb	9	9	3	SVIGRRQGL	SVNGRRQGL	SMM	279.969	612.506	2.188	78	0.154	415.245	1673.187	4.029	2647.74	512.62	4801.6	977.9	612.5055101	279.9690348	698.6344547	317.8703353	M7	-0.714285714	-0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.168	78	0	0	NA	9qB	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.765800956	sgMsh2	cell line
chr9	109605393	109605393	A	G	ENSMUST00000073962.7	1	ENSMUSG00000062275	missense	Y/H	380	Fbxw24	ENSMUST00000073962.7:c.1138T>C	ENSMUSP00000073617.6:p.Tyr380His	H-2-Kb	9	7	5	QTFQHSPEM	QTFQYSPEM	SMM	203.756	163.347	0.802	199	0.176	373.176	147.323	0.395	131.3	599.65	121.8	424.8	163.3465627	203.7558094	256.0059151	321.5511003	M7	-1.128571429	-1.128571429	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.164	199	0	0	NA	9qF2	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.7475676	sgMsh2	cell line
chr9	121584218	121584218	A	G	ENSMUST00000077706.9	1	ENSMUSG00000032530	missense	V/A	48	Lyzl4	ENSMUST00000077706.9:c.143T>C	ENSMUSP00000076887.3:p.Val48Ala	H-2-Db	9	5	7	YSLENWACL	YSLENWVCL	NetMHC	4.23	4.14	0.979	92	0.207	20.373	25.454	1.249	4.14	4.23	7.4	6.5	43.61340556	34.2468002	43.50808817	36.52329911	M7	0.571428571	0.571428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	92	0	0	NA	9qF4	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chrX	49683537	49683537	G	A	ENSMUST00000214273.1	5	ENSMUSG00000071764	missense	V/M	12	Olfr1320	ENSMUST00000214273.1:c.34G>A	ENSMUSP00000150556.1:p.Val12Met	H-2-Db	9	3	9	VGPENATMM	VGPENATMV	NetMHC	29.29	113.68	3.881	68	0.074	254.329	544.618	2.141	113.68	29.29	258.2	165.4	831.0363108	343.2574722	1154.968129	511.1754641	M7	-0.528571429	-0.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.082	68	0	0	NA	XqA5	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	sgMsh2	cell line
chrX	7608995	7608995	A	G	ENSMUST00000115726.8	1	ENSMUSG00000031142	missense	N/D	79	Cacna1f	ENSMUST00000115726.8:c.235A>G	ENSMUSP00000111391.2:p.Asn79Asp	H-2-Db	9	5	7	FCLTLTDPI	FCLTLTNPI	NetMHC	130.16	342.27	2.63	55	0.382	346.437	859.125	2.48	342.27	130.16	1129.2	442.2	898.7108813	350.4451065	819.5397067	342.4285761	M7	0.8	1.142857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.378	55	0	0	NA	XqA1.1	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	sgMsh2	cell line
chrX	167306156	167306156	A	G	ENSMUST00000112161.7	1	ENSMUSG00000044583	missense	M/T	778	Tlr7	ENSMUST00000112161.7:c.2333T>C	ENSMUSP00000107787.1:p.Met778Thr	H-2-Db	9	4	8	NVLNNLETL	NVLNNLEML	NetMHCpan	106.4	677.9	6.371	126	0.397	138.652	575.836	4.153	938.34	167.72	677.9	106.4	433.1317299	133.2355135	473.7726652	144.0688203	M7	0.028571429	0.085714286	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.406	126	0	0	NA	XqF5	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	sgMsh2	cell line
chr9	123002099	123002099	GA	G	ENSMUST00000040717.6	1	ENSMUSG00000036768	FS	E/X	974	Kif15	ENSMUST00000040717.6:c.2924del	ENSMUSP00000035490.5:p.Lys975SerfsTer14	H-2-Db	9	8	5	SSLESLESL	NA	NetMHCpan	320	NA	NA	153	0.268	454.677	NA	NA	NA	392.2	NA	320	NA	517.1541332	NA	561.7848201	M7	0.4	0.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.262	153	30	3	0.1	9qF4	chr9-121937817-124127055	3	2	1	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chrX	106931045	106931045	A	C	ENSMUST00000060576.7	1	ENSMUSG00000049929	missense	Q/H	278	Lpar4	ENSMUST00000060576.7:c.834A>C	ENSMUSP00000053986.7:p.Gln278His	H-2-Db	9	5	7	YALVRSHAI	YALVRSQAI	NetMHCpan	195.7	333	1.702	78	0.538	348.006	505.058	1.451	923.21	413.56	333	195.7	459.8540333	295.542539	550.2626052	400.4700113	M7	0.828571429	0.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.567	78	6	4	0.666666667	XqD	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	sgMsh2	cell line
chrX	164162297	164162297	A	C	ENSMUST00000112271.9	1	ENSMUSG00000015405	missense	E/A	238	Ace2	ENSMUST00000112271.9:c.713A>C	ENSMUSP00000107890.3:p.Glu238Ala	H-2-Kb	8	6	6	IKPLYAHL	IKPLYEHL	NetMHC	12.39	253.44	20.455	107	0.346	30.114	237.309	7.88	253.44	12.39	985.6	114.2	207.8452003	29.76733808	221.1770188	30.46070846	M7	-0.085714286	0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.352	107	0	0	NA	XqF5	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	sgMsh2	cell line
chrX	49683537	49683537	G	A	ENSMUST00000214273.1	5	ENSMUSG00000071764	missense	V/M	12	Olfr1320	ENSMUST00000214273.1:c.34G>A	ENSMUSP00000150556.1:p.Val12Met	H-2-Kb	8	11	1	MVTEFFLL	VVTEFFLL	NetMHCpan	94.3	32.4	0.344	68	0.074	133.588	48.985	0.367	41.38	180.25	32.4	94.3	56.59003988	120.7090967	69.1416915	146.4670721	M7	1.885714286	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.082	68	0	0	NA	XqA5	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	sgMsh2	cell line
chrX	106930585	106930585	G	A	ENSMUST00000060576.7	1	ENSMUSG00000049929	missense	S/N	125	Lpar4	ENSMUST00000060576.7:c.374G>A	ENSMUSP00000053986.7:p.Ser125Asn	H-2-Kb	8	5	7	LTNIYGNM	LTNIYGSM	SMMPMBEC	202.647	463.17	2.286	76	0.395	240.886	656.883	2.727	1047.53	265.63	783.2	426.7	530.5667136	216.1424152	463.16955	202.6469166	M7	-0.428571429	-0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.389	76	6	4	0.666666667	XqD	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	sgMsh2	cell line
chrX	164162297	164162297	A	C	ENSMUST00000112271.9	1	ENSMUSG00000015405	missense	E/A	238	Ace2	ENSMUST00000112271.9:c.713A>C	ENSMUSP00000107890.3:p.Glu238Ala	H-2-Kb	8	10	2	YAHLHAYV	YEHLHAYV	NetMHC	266.02	11963.56	44.972	107	0.346	375.522	5972.718	15.905	11963.56	266.02	9671.7	307.7	2273.735801	443.3431473	2092.859144	446.4162552	M7	0.557142857	0.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.352	107	0	0	NA	XqF5	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	sgMsh2	cell line
chrX	149617170	149617170	A	G	ENSMUST00000101181.4	5	ENSMUSG00000072923	missense	Q/R	345	Gm10439	ENSMUST00000101181.4:c.1034A>G	ENSMUSP00000098741.4:p.Gln345Arg	H-2-Kb	8	8	4	SSIRSWML	SSIQSWML	SMM	240.846	284.931	1.183	178	0.039	282.95	462.043	1.633	655.63	287.8	550.2	278.1	284.9311953	240.8463117	373.8866857	304.6070846	M7	0.457142857	0.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.036	178	0	0	NA	XqF3	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	sgMsh2	cell line
chrX	33313672	33313672	AT	A	ENSMUST00000178827.2	NA	ENSMUSG00000101500	FS	F/X	84	Btbd35f12	ENSMUST00000178827.2:c.254del	ENSMUSP00000137368.2:p.Leu85TrpfsTer46	H-2-Kb	8	29	0	VYTKYFYV	NA	NetMHCpan	214.5	NA	NA	13	0.538	399.289	NA	NA	NA	324.62	NA	214.5	NA	473.9581548	NA	539.1877292	M7	-0.214285714	-0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.533	13	0	0	NA	XqA3.1	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	sgMsh2	cell line
chrX	33313672	33313672	AT	A	ENSMUST00000178827.2	NA	ENSMUSG00000101500	FS	F/X	84	Btbd35f12	ENSMUST00000178827.2:c.254del	ENSMUSP00000137368.2:p.Leu85TrpfsTer46	H-2-Kb	8	40	0	TLLTFSKV	NA	NetMHCpan	252.9	NA	NA	13	0.538	395.935	NA	NA	NA	440.52	NA	252.9	NA	441.3061706	NA	351.3500341	M7	1.314285714	1.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.533	13	0	0	NA	XqA3.1	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	sgMsh2	cell line
chrX	100718024	100718024	A	G	ENSMUST00000048962.3	1	ENSMUSG00000034311	missense	I/V	1023	Kif4	ENSMUST00000048962.3:c.3067A>G	ENSMUSP00000048383.3:p.Ile1023Val	H-2-Kb	8	6	6	SSFEYVPP	SSFEYIPP	SMM	40.808	44.539	1.091	76	0.382	241.944	254.05	1.05	558.63	512.37	451.9	435.5	44.53895263	40.80750101	56.20047679	48.38825938	M7	-0.257142857	-0.142857143	FALSE	FALSE	TRUE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.397	76	37	15	0.405405405	XqC3	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	sgMsh2	cell line
chrX	20644940	20644940	A	T	ENSMUST00000115374.7	1	ENSMUSG00000031060	missense	Q/L	267	Rbm10	ENSMUST00000115374.7:c.800A>T	ENSMUSP00000111032.1:p.Gln267Leu	H-2-Kb	8	9	3	LSLGLLPL	LSQGLLPL	SMMPMBEC	348.931	945.671	2.71	58	0.517	402.308	1359.735	3.38	2509.64	710.55	1773.8	422.9	913.5661511	381.7156799	945.6708451	348.9313575	M7	1.771428571	1.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.502	58	24	4	0.166666667	XqA1.3	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	sgMsh2	cell line
chrX	153392828	153392828	A	T	ENSMUST00000112574.8	1	ENSMUSG00000041649	missense	D/V	343	Klf8	ENSMUST00000112574.8:c.1028A>T	ENSMUSP00000108193.2:p.Asp343Val	H-2-Kb	9	5	7	RSFSRSVHL	RSFSRSDHL	NetMHCpan	26.9	121.5	4.517	20	0.25	59.407	161.552	2.719	166.75	32.89	121.5	26.9	156.3543614	85.92311238	215.8986864	112.2664526	M7	0.214285714	0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.274	20	2	1	0.5	XqF3	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	sgMsh2	cell line
chrX	135613266	135613266	C	T	ENSMUST00000113159.7	5	ENSMUSG00000031411	missense	E/K	425	Prame	ENSMUST00000113159.7:c.1273G>A	ENSMUSP00000108784.1:p.Glu425Lys	H-2-Kb	9	11	1	KQWQFHGRL	EQWQFHGRL	NetMHC	34.51	455.42	13.197	110	0.391	226.444	653.524	2.886	455.42	34.51	390.2	77.7	1300.498932	478.7513372	851.6281337	375.1889162	M7	-0.842857143	-0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.397	110	0	0	NA	XqF1	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	sgMsh2	cell line
chrX	33313672	33313672	AT	A	ENSMUST00000178827.2	NA	ENSMUSG00000101500	FS	F/X	84	Btbd35f12	ENSMUST00000178827.2:c.254del	ENSMUSP00000137368.2:p.Leu85TrpfsTer46	H-2-Kb	9	28	0	GVYTKYFYV	NA	SMM	95.304	NA	NA	13	0.538	106.634	NA	NA	NA	110.88	NA	190.9	NA	95.3037523	NA	102.3882217	M7	-0.214285714	-0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.533	13	0	0	NA	XqA3.1	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	sgMsh2	cell line
chrX	33313672	33313672	AT	A	ENSMUST00000178827.2	NA	ENSMUSG00000101500	FS	F/X	84	Btbd35f12	ENSMUST00000178827.2:c.254del	ENSMUSP00000137368.2:p.Leu85TrpfsTer46	H-2-Kb	9	33	0	YFYVSQATL	NA	NetMHC	168.62	NA	NA	13	0.538	267.59	NA	NA	NA	168.62	NA	228.2	NA	306.9799422	NA	425.8434778	M7	0.5	0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.533	13	0	0	NA	XqA3.1	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	sgMsh2	cell line
chrX	86747655	86747655	G	A	ENSMUST00000113966.7	5	ENSMUSG00000052372	missense	P/S	560	Il1rapl1	ENSMUST00000113966.7:c.1678C>T	ENSMUSP00000109599.1:p.Pro560Ser	H-2-Kb	9	10	2	MSFKRIEPI	MPFKRIEPI	NetMHCpan	58.3	2180.6	37.403	67	0.045	177.366	2262.711	12.757	4631.31	173.91	2180.6	58.3	2344.822647	233.4049166	1946.480243	180.8214719	M7	-0.242857143	-0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.06	67	0	0	NA	XqC1	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	sgMsh2	cell line
chr9	121584218	121584218	A	G	ENSMUST00000077706.9	1	ENSMUSG00000032530	missense	V/A	48	Lyzl4	ENSMUST00000077706.9:c.143T>C	ENSMUSP00000076887.3:p.Val48Ala	H-2-Kb	9	5	7	YSLENWACL	YSLENWVCL	NetMHC	204.42	682.63	3.339	92	0.207	432.117	688.915	1.594	682.63	204.42	1098.8	509.6	695.2003787	482.0698829	517.9048762	382.1641989	M7	0.571428571	0.571428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	92	0	0	NA	9qF4	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	sgMsh2	cell line
chrX	48263598	48263598	T	A	ENSMUST00000080713.4	1	ENSMUSG00000063785	missense	F/Y	168	Utp14a	ENSMUST00000080713.4:c.503T>A	ENSMUSP00000079538.4:p.Phe168Tyr	H-2-Kb	9	9	3	SSYAPMEHV	SSFAPMEHV	NetMHC	205.1	379.33	1.849	44	0.409	345.153	552.142	1.6	379.33	205.1	420.2	264.6	684.0848933	425.7062242	755.5270188	499.1717511	M7	-0.242857143	-0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.405	44	40	21	0.525	XqA5	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	sgMsh2	cell line
chrX	49683537	49683537	G	A	ENSMUST00000214273.1	5	ENSMUSG00000071764	missense	V/M	12	Olfr1320	ENSMUST00000214273.1:c.34G>A	ENSMUSP00000150556.1:p.Val12Met	H-2-Kb	9	10	2	MMVTEFFLL	MVVTEFFLL	SMM	202.353	438.642	2.168	68	0.074	242.708	456.266	1.88	473.89	310.77	302.3	211.1	438.6417848	202.3531643	557.5065832	274.3152803	M7	1.885714286	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.082	68	0	0	NA	XqA5	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	sgMsh2	cell line
chrX	81071088	81071088	C	A	ENSMUST00000026760.2	1	ENSMUSG00000025666	missense	L/M	52	Tmem47	ENSMUST00000026760.2:c.154C>A	ENSMUSP00000026760.2:p.Leu52Met	H-2-Kb	9	5	7	ADHQYYMSL	ADHQYYLSL	SMMPMBEC	313.509	317.87	1.014	22	0.591	368.361	475.161	1.29	1079.79	422.83	514.7	328.3	435.622196	408.4228203	317.8703353	313.5089908	M7	-0.628571429	-0.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.571	22	0	0	NA	XqB	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	sgMsh2	cell line
chrX	81071088	81071088	C	A	ENSMUST00000026760.2	1	ENSMUSG00000025666	missense	L/M	52	Tmem47	ENSMUST00000026760.2:c.154C>A	ENSMUSP00000026760.2:p.Leu52Met	H-2-Kb	9	3	9	VTADHQYYM	VTADHQYYL	SMM	371.629	282.56	0.76	22	0.591	488.476	327.583	0.671	499.45	963.09	241.8	472	282.5595563	371.6293451	372.6061339	504.9518876	M7	-1.3	-0.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.571	22	0	0	NA	XqB	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	sgMsh2	cell line
chr1	10209499	10209499	T	G	ENSMUST00000088615.10	5	ENSMUSG00000067851	missense	E/A	281	Arfgef1	ENSMUST00000088615.10:c.842A>C	ENSMUSP00000085986.4:p.Glu281Ala	H-2-Db	9	10	2	TAPENGSDI	TEPENGSDI	NetMHC	68.02	9711.11	142.768	212	0.307	210.223	7893.571	37.549	9711.11	68.02	9883.5	180.8	6076.031266	286.8269798	4462.415444	239.6458982	M8_p20	-1.257142857	-1.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.294	212	0	0	NA	1qA2	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr1	165539831	165539831	A	G	ENSMUST00000027852.14	1	ENSMUSG00000026567	missense	T/A	557	Adcy10	ENSMUST00000027852.14:c.1669A>G	ENSMUSP00000027852.8:p.Thr557Ala	H-2-Db	9	4	8	SFHQNFYAI	SFHQNFYTI	SMM	105.104	62.176	0.592	172	0.233	167.108	96.911	0.58	73.99	141.21	379.5	647.3	62.17560216	105.1041828	119.8312253	193.0056399	M8_p20	-0.342857143	-0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.243	172	0	0	NA	1qH2.3	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr1	85579187	85579187	CT	C	ENSMUST00000093508.6	1	ENSMUSG00000070034	FS	K/X	385	Sp110	ENSMUST00000093508.6:c.1154del	ENSMUSP00000091226.6:p.Lys385SerfsTer13	H-2-Db	9	11	1	SAFRMRQEI	NA	SMMPMBEC	212.114	NA	NA	62	0.113	246.936	NA	NA	NA	356.88	NA	263.4	NA	230.4729708	NA	212.1143253	M8_p20	-0.971428571	-0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.146	62	0	0	NA	1qC5	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	0.65993345	sgMsh2	cell line
chr1	127412243	127412243	G	T	ENSMUST00000038361.10	1	ENSMUSG00000036155	missense	V/L	454	Mgat5	ENSMUST00000038361.10:c.1360G>T	ENSMUSP00000038359.4:p.Val454Leu	H-2-Kb	8	4	8	QSLVYGKL	QSLVYGKV	NetMHC	15.26	75.8	4.967	111	0.171	52.362	246.565	4.709	75.8	15.26	265.7	39.6	232.6697911	65.12383991	260.4593785	71.90183929	M8_p20	0.771428571	0.771428571	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.192	111	0	0	NA	1qE3	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	0.867857688	sgMsh2	cell line
chr1	128364313	128364313	A	G	ENSMUST00000027602.14	1	ENSMUSG00000026356	missense	V/A	476	Dars	ENSMUST00000027602.14:c.1427T>C	ENSMUSP00000027602.8:p.Val476Ala	H-2-Kb	8	11	1	ATMLFLGL	VTMLFLGL	NetMHCpan	13.4	5.5	0.41	123	0.195	28.635	8.869	0.31	5.27	15.32	5.5	13.4	14.47904774	54.54312289	12.23883275	41.95077612	M8_p20	2.142857143	2.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.197	123	0	0	NA	1qE3	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	0.890458149	sgMsh2	cell line
chr1	84912361	84912361	C	A	ENSMUST00000027422.6	1	ENSMUSG00000026220	missense	A/S	408	Slc16a14	ENSMUST00000027422.6:c.1222G>T	ENSMUSP00000027422.5:p.Ala408Ser	H-2-Kb	8	6	6	LMHTYSSL	LMHTYASL	NetMHC	32.78	13.28	0.405	95	0.179	74.006	33.853	0.457	13.28	32.78	20.2	35.1	63.64144033	143.7937467	47.50507412	112.911974	M8_p20	-0.157142857	-0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.172	95	0	0	NA	1qC5	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	0.777455846	sgMsh2	cell line
chr1	88233353	88233353	T	G	ENSMUST00000113130.7	5	ENSMUSG00000079429	missense	L/R	231	Mroh2a	ENSMUST00000113130.7:c.692T>G	ENSMUSP00000108755.1:p.Leu231Arg	H-2-Kb	8	7	5	VQFYRRHL	VQFYLRHL	NetMHC	36.12	18.54	0.513	438	0.078	95.506	36.489	0.382	18.54	36.12	19.8	52.1	53.17897962	156.221211	53.17897962	138.9120754	M8_p20	-1.485714286	-1.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.08	438	0	0	NA	1qD	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	0.36160737	sgMsh2	cell line
chr1	152855898	152855898	T	C	ENSMUST00000043560.14	1	ENSMUSG00000042772	missense	R/G	379	Smg7	ENSMUST00000043560.14:c.1135A>G	ENSMUSP00000041241.8:p.Arg379Gly	H-2-Kb	8	5	7	VSMDWLGL	VSMDWLRL	NetMHCpan	34.7	24.7	0.712	224	0.259	70.049	45.03	0.643	38.45	50.82	24.7	34.7	69.30107956	116.611129	51.61072977	89.27708467	M8_p20	0.557142857	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.268	224	0	0	NA	1qG3	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr1	132014588	132014588	A	G	ENSMUST00000086556.11	1	ENSMUSG00000026436	missense	Y/C	66	Elk4	ENSMUST00000086556.11:c.197A>G	ENSMUSP00000083743.5:p.Tyr66Cys	H-2-Kb	8	6	6	RALRYCYV	RALRYYYV	NetMHC	53.18	33.42	0.628	69	0.217	95.601	68.626	0.718	33.42	53.18	49.2	71.6	88.05215715	119.6024291	102.2680559	132.3548926	M8_p20	0.742857143	0.742857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.225	69	0	0	NA	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr1	58595689	58595689	A	T	ENSMUST00000027193.8	1	ENSMUSG00000026032	missense	I/F	67	Ndufb3	ENSMUST00000027193.8:c.199A>T	ENSMUSP00000027193.8:p.Ile67Phe	H-2-Kb	8	9	3	GNFTFPSV	GNITFPSV	NetMHCpan	49.1	289.6	5.898	115	0.165	107.5	583.368	5.427	915.1	105.67	289.6	49.1	648.2462304	133.5795574	518.4895408	109.3301641	M8_p20	0.457142857	0.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	115	0	0	NA	1qC1.3	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	0.904018425	sgMsh2	cell line
chr1	25131380	25131380	C	T	ENSMUST00000151309.7	1	ENSMUSG00000033569	missense	A/T	946	Adgrb3	ENSMUST00000151309.7:c.2836G>A	ENSMUSP00000116231.1:p.Ala946Thr	H-2-Kb	8	11	1	TFLHFFFL	AFLHFFFL	SMM	29.359	37.046	1.262	71	0.268	91.507	114.731	1.254	197.19	183.87	187.8	150.3	37.0458872	29.35891489	41.66198901	32.71447838	M8_p20	2.228571429	2.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.26	71	0	0	NA	1qA5	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr1	151351713	151351713	T	C	ENSMUST00000023918.12	1	ENSMUSG00000023150	missense	Y/H	91	Ivns1abp	ENSMUST00000023918.12:c.271T>C	ENSMUSP00000023918.6:p.Tyr91His	H-2-Kb	8	5	7	VLLNYAHT	VLLNYAYT	SMMPMBEC	192.637	198.034	1.028	183	0.169	277.822	339.303	1.221	371.18	233.73	1146.3	1299.8	307.4255792	321.9141004	198.0341096	192.6371303	M8_p20	0.1	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.175	183	0	0	NA	1qG1	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	0.791016122	sgMsh2	cell line
chr1	25131380	25131380	C	T	ENSMUST00000151309.7	1	ENSMUSG00000033569	missense	A/T	946	Adgrb3	ENSMUST00000151309.7:c.2836G>A	ENSMUSP00000116231.1:p.Ala946Thr	H-2-Kb	8	10	2	TTFLHFFF	TAFLHFFF	NetMHCpan	114.1	115.4	1.011	71	0.268	226.626	275.124	1.214	205.31	235.11	115.4	114.1	389.7086091	252.1970487	344.9371732	218.1423563	M8_p20	1.585714286	1.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.26	71	0	0	NA	1qA5	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr1	155293260	155293260	T	C	ENSMUST00000027741.11	1	ENSMUSG00000026469	missense	D/G	506	Xpr1	ENSMUST00000027741.11:c.1517A>G	ENSMUSP00000027741.5:p.Asp506Gly	H-2-Kb	8	11	1	GTVVFFYL	DTVVFFYL	SMMPMBEC	92.628	163.584	1.766	46	0.217	199.212	361.021	1.812	559.15	248.2	555.8	308.4	166.241711	150.2242346	163.5836898	92.62751223	M8_p20	2.257142857	2.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.249	46	0	0	NA	1qG3	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr1	123384300	123384300	C	A	ENSMUST00000112606.7	1	ENSMUSG00000036815	missense	G/V	453	Dpp10	ENSMUST00000112606.7:c.1358G>T	ENSMUSP00000108225.1:p.Gly453Val	H-2-Kb	8	7	5	SSPQVRQL	SSPQGRQL	SMM	245.89	704.271	2.864	151	0.377	327.259	1194.096	3.649	1683.92	351.31	3489.5	1309.8	704.2713151	245.8895091	636.4144033	303.2075422	M8_p20	-0.842857143	-0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.365	151	0	0	NA	1qE2.3	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	2	1	sgMsh2	cell line
chr1	154633618	154633618	A	G	ENSMUST00000187541.6	1	ENSMUSG00000004110	missense	L/P	297	Cacna1e	ENSMUST00000187541.6:c.890T>C	ENSMUSP00000140937.1:p.Leu297Pro	H-2-Kb	8	8	4	DNIPFAVL	DNILFAVL	SMM	178.131	93.485	0.525	152	0.303	412.973	165.678	0.401	220.76	608.34	374.2	572	93.48458404	178.1312026	110.5961477	253.9451951	M8_p20	1.714285714	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.277	152	0	0	NA	1qG3	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr1	151351713	151351713	T	C	ENSMUST00000023918.12	1	ENSMUSG00000023150	missense	Y/H	91	Ivns1abp	ENSMUST00000023918.12:c.271T>C	ENSMUSP00000023918.6:p.Tyr91His	H-2-Kb	9	7	5	LNYAHTAQL	LNYAYTAQL	NetMHCpan	10.4	5.2	0.5	183	0.169	31.415	21.341	0.679	6.52	17.41	5.2	10.4	48.31811688	60.27122243	36.16179668	45.42030017	M8_p20	-0.185714286	-0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.175	183	0	0	NA	1qG1	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	0.791016122	sgMsh2	cell line
chr1	25131380	25131380	C	T	ENSMUST00000151309.7	1	ENSMUSG00000033569	missense	A/T	946	Adgrb3	ENSMUST00000151309.7:c.2836G>A	ENSMUSP00000116231.1:p.Ala946Thr	H-2-Kb	9	10	2	TTFLHFFFL	TAFLHFFFL	NetMHCpan	14.2	13.4	0.944	71	0.268	31.34	25.255	0.806	18.88	19.8	13.4	14.2	31.63078717	43.5622196	33.20855664	42.87952838	M8_p20	2.228571429	2.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.26	71	0	0	NA	1qA5	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr1	88233353	88233353	T	G	ENSMUST00000113130.7	5	ENSMUSG00000079429	missense	L/R	231	Mroh2a	ENSMUST00000113130.7:c.692T>G	ENSMUSP00000108755.1:p.Leu231Arg	H-2-Kb	9	6	6	TVQFYRRHL	TVQFYLRHL	NetMHC	126.67	85.86	0.678	438	0.078	471.067	257.259	0.546	85.86	126.67	51.1	243.5	428.6570788	722.9528931	435.7626466	698.6344547	M8_p20	-1.485714286	-1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.08	438	0	0	NA	1qD	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	0.36160737	sgMsh2	cell line
chr1	128364313	128364313	A	G	ENSMUST00000027602.14	1	ENSMUSG00000026356	missense	V/A	476	Dars	ENSMUST00000027602.14:c.1427T>C	ENSMUSP00000027602.8:p.Val476Ala	H-2-Kb	9	6	6	IGLERATML	IGLERVTML	NetMHCpan	169.6	134.8	0.795	123	0.195	303	226.99	0.749	136.11	195.56	134.8	169.6	457.2039776	492.1641774	317.8703353	410.4403034	M8_p20	0.371428571	0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.197	123	0	0	NA	1qE3	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	0.890458149	sgMsh2	cell line
chr1	85579187	85579187	CT	C	ENSMUST00000093508.6	1	ENSMUSG00000070034	FS	K/X	385	Sp110	ENSMUST00000093508.6:c.1154del	ENSMUSP00000091226.6:p.Lys385SerfsTer13	H-2-Kb	9	11	1	SAFRMRQEI	NA	NetMHC	222.54	NA	NA	62	0.113	380.963	NA	NA	NA	222.54	NA	325.3	NA	436.6264089	NA	527.5334467	M8_p20	-0.971428571	-0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.146	62	0	0	NA	1qC5	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	0.65993345	sgMsh2	cell line
chr1	173270231	173270231	A	G	ENSMUST00000213420.1	5	ENSMUSG00000049605	missense	S/G	19	Olfr418	ENSMUST00000213420.1:c.55A>G	ENSMUSP00000150427.1:p.Ser19Gly	H-2-Kb	9	4	8	FVFQGFSGF	FVFQGFSSF	NetMHCpan	196.3	191.2	0.974	269	0.067	310.099	338.26	1.091	338.26	307.51	191.2	196.3	350.8407252	312.6871254	338.259498	332.8511027	M8_p20	0.471428571	1.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2	2	0.076	269	0	0	NA	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	0.343527002	sgMsh2	cell line
chr1	85642993	85642993	A	G	ENSMUST00000080204.10	1	ENSMUSG00000070031	missense	K/R	448	Sp140	ENSMUST00000080204.10:c.1343A>G	ENSMUSP00000079095.4:p.Lys448Arg	H-2-Kb	9	10	2	SRMPYYYYF	SKMPYYYYF	SMM	234.482	268.602	1.146	94	0.16	335.317	342.105	1.02	335.61	342.35	348.6	524.7	268.6024688	234.4822647	349.3413547	328.2842143	M8_p20	-0.3	-0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.192	94	0	0	NA	1qC5	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	0.867857688	sgMsh2	cell line
chr1	105746069	105746069	T	C	ENSMUST00000039173.12	1	ENSMUSG00000026319	missense	F/S	1085	Relch	ENSMUST00000039173.12:c.3254T>C	ENSMUSP00000039178.6:p.Phe1085Ser	H-2-Kb	9	11	1	SVIPHLHKL	FVIPHLHKL	NetMHCpan	91.1	303.2	3.328	123	0.276	368.395	589.436	1.6	623.09	350.2	303.2	91.1	609.691303	395.4667729	569.1804832	386.5894518	M8_p20	0.028571429	0.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.289	123	0	0	NA	1qE2.1	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr1	85642993	85642993	A	G	ENSMUST00000080204.10	1	ENSMUSG00000070031	missense	K/R	448	Sp140	ENSMUST00000080204.10:c.1343A>G	ENSMUSP00000079095.4:p.Lys448Arg	H-2-Kb	9	4	8	SESSFFSRM	SESSFFSKM	SMM	350.841	639.897	1.824	94	0.16	480.171	992.792	2.068	1226.57	457.71	1243.7	666.4	639.8968908	350.8407252	759.0143731	502.6318444	M8_p20	0.085714286	0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.192	94	0	0	NA	1qC5	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	0.867857688	sgMsh2	cell line
chr1	127412243	127412243	G	T	ENSMUST00000038361.10	1	ENSMUSG00000036155	missense	V/L	454	Mgat5	ENSMUST00000038361.10:c.1360G>T	ENSMUSP00000038359.4:p.Val454Leu	H-2-Kb	9	6	6	LVYGKLDSF	LVYGKVDSF	SMM	278.042	542.138	1.95	111	0.171	372.202	726.824	1.953	911.51	463.7	1434.9	1078.9	542.1381881	278.0417415	480.0096849	280.704904	M8_p20	-0.471428571	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.192	111	0	0	NA	1qE3	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	0.867857688	sgMsh2	cell line
chr1	150808584	150808584	C	A	ENSMUST00000074783.11	5	ENSMUSG00000066842	missense	G/C	412	Hmcn1	ENSMUST00000074783.11:c.1234G>T	ENSMUSP00000074340.5:p.Gly412Cys	H-2-Kb	9	5	7	TGYDKDCYL	TGYDKDGYL	SMMPMBEC	281.352	241.129	0.857	96	0.26	397.422	570.225	1.435	814.53	465.91	815.3	889.7	325.9192408	328.9349344	241.1293081	281.3519957	M8_p20	-1.028571429	-1.028571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	96	0	0	NA	1qG1	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr10	68778643	68778643	T	C	ENSMUST00000080995.7	1	ENSMUSG00000060044	missense	L/P	296	Tmem26	ENSMUST00000080995.7:c.887T>C	ENSMUSP00000079789.6:p.Leu296Pro	H-2-Db	9	5	7	FAVKNSPVM	FAVKNSLVM	NetMHC	8.71	9.25	1.062	194	0.314	25.374	27.679	1.091	9.25	8.71	9.8	10.7	46.62512402	43.51309752	45.5585612	40.04700113	M8_p20	0.071428571	0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.311	194	0	0	NA	10qB5.3	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr10	68778643	68778643	T	C	ENSMUST00000080995.7	1	ENSMUSG00000060044	missense	L/P	296	Tmem26	ENSMUST00000080995.7:c.887T>C	ENSMUSP00000079789.6:p.Leu296Pro	H-2-Db	11	5	7	FAVKNSPVMAL	FAVKNSLVMAL	NetMHCpan	139.4	136.7	0.981	194	0.314	479.924	423.713	0.883	274.55	315.59	136.7	139.4	572.8751711	644.2582669	2605.313561	2641.557083	M8_p20	0.828571429	0.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.311	194	0	0	NA	10qB5.3	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr10	50754122	50754122	G	T	ENSMUST00000035606.9	5	ENSMUSG00000038774	missense	S/I	1769	Ascc3	ENSMUST00000035606.9:c.5306G>T	ENSMUSP00000036726.8:p.Ser1769Ile	H-2-Kb	8	8	4	MNPIYYSL	MNPSYYSL	NetMHC	10.83	12.27	1.133	225	0.249	32.613	36.465	1.118	12.27	10.83	28.9	21.7	44.02911945	43.52512229	62.62388407	64.23030732	M8_p20	-0.028571429	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.239	225	0	0	NA	10qB3	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr10	129501829	129501829	T	C	ENSMUST00000218901.1	NA	ENSMUSG00000044025	missense	F/S	315	Olfr790	ENSMUST00000218901.1:c.944T>C	ENSMUSP00000151759.1:p.Phe315Ser	H-2-Kb	8	13	2	ISFSSKNL	IFFSSKNL	NetMHCpan	18.5	115.8	6.259	81	0.222	19.094	83.126	4.354	110.95	18.52	115.8	18.5	45.89231861	19.66708524	55.30189331	20.68902384	M8_p20	-0.457142857	-0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.245	81	0	0	NA	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr10	127170070	127170070	CT	C	ENSMUST00000006914.10	1	ENSMUSG00000006731	FS	F/X	302	B4galnt1	ENSMUST00000006914.10:c.907del	ENSMUSP00000006914.9:p.Tyr303ThrfsTer6	H-2-Kb	8	6	7	ASIRRFTL	ASIRRFYP	NetMHC	29	3440.11	118.624	186	0.296	210.968	4453.498	21.11	3440.11	29	1848.8	57.4	6176.465217	435.2512229	5466.885777	364.5356443	M8_p20	0.085714286	0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.294	186	0	0	NA	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr10	129626025	129626025	A	G	ENSMUST00000204979.2	2	ENSMUSG00000095002	missense	L/P	12	Olfr798	ENSMUST00000204979.2:c.35T>C	ENSMUSP00000144716.1:p.Leu12Pro	H-2-Kb	8	5	7	SVSEFIPL	SVSEFILL	NetMHC	38.39	159.69	4.16	84	0.262	72.402	215.586	2.978	159.69	38.39	96.3	42.3	271.4813499	102.5038081	318.9627742	115.8083836	M8_p20	1.342857143	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.264	84	0	0	NA	10qD3	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	sgMsh2	cell line
chr10	40227566	40227566	T	G	ENSMUST00000183309.7	1	ENSMUSG00000038510	missense	S/R	197	Rpf2	ENSMUST00000183309.7:c.589A>C	ENSMUSP00000138581.1:p.Ser197Arg	H-2-Kb	8	7	5	VYFRRYKL	VYFRSYKL	NetMHC	57.17	143.56	2.511	137	0.19	156.487	155.477	0.994	143.56	57.17	65	69.9	167.3940435	272.7344509	189.1211064	243.0748352	M8_p20	-1.271428571	-1.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.202	137	0	0	NA	10qB1	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	0.91305861	sgMsh2	cell line
chr11	34688463	34688463	A	T	ENSMUST00000093193.11	1	ENSMUSG00000020143	missense	L/M	708	Dock2	ENSMUST00000093193.11:c.2122T>A	ENSMUSP00000090884.5:p.Leu708Met	H-2-Kb	8	9	3	ATMAYKKL	ATLAYKKL	NetMHCpan	62.7	80.7	1.287	314	0.331	117.441	94.582	0.805	84.03	96.29	80.7	62.7	118.7790917	204.0515979	105.1332282	138.5925865	M8_p20	-0.328571429	-0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.321	314	0	0	NA	11qA4	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	2	1	sgMsh2	cell line
chr10	81509375	81509375	A	G	ENSMUST00000043709.7	1	ENSMUSG00000034792	missense	W/R	219	Gna15	ENSMUST00000043709.7:c.655T>C	ENSMUSP00000049175.7:p.Trp219Arg	H-2-Kb	8	11	1	RIHCFENV	WIHCFENV	SMM	346.529	467.455	1.349	200	0.265	369.99	655.698	1.772	843.94	365.18	1509.8	374.8	467.4552051	346.5293309	451.5855118	392.4099402	M8_p20	0.542857143	0.542857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.252	200	0	0	NA	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr10	40227566	40227566	T	G	ENSMUST00000183309.7	1	ENSMUSG00000038510	missense	S/R	197	Rpf2	ENSMUST00000183309.7:c.589A>C	ENSMUSP00000138581.1:p.Ser197Arg	H-2-Kb	8	8	4	YFRRYKLL	YFRSYKLL	SMM	208.324	310.27	1.489	137	0.19	311.059	539.717	1.735	718.24	383.48	735.4	396.7	310.2701531	208.324333	361.1935614	238.6382195	M8_p20	-0.542857143	-0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.202	137	0	0	NA	10qB1	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	0.91305861	sgMsh2	cell line
chr10	130472110	130472110	CA	C	ENSMUST00000164227.3	5	ENSMUSG00000091511	FS	L/X	753	Vmn2r87	ENSMUST00000164227.3:c.2258del	ENSMUSP00000129215.2:p.Leu753TrpfsTer25	H-2-Kb	8	15	0	ASLWLSWL	NA	SMM	312.421	NA	NA	363	0.212	407.641	NA	NA	NA	717.62	NA	457.4	NA	312.4208431	NA	357.8821189	M8_p20	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.211	363	0	0	NA	10qD3	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	sgMsh2	cell line
chr10	130472110	130472110	CA	C	ENSMUST00000164227.3	5	ENSMUSG00000091511	FS	L/X	753	Vmn2r87	ENSMUST00000164227.3:c.2258del	ENSMUSP00000129215.2:p.Leu753TrpfsTer25	H-2-Kb	8	19	0	LSWLGTFL	NA	SMMPMBEC	307.426	NA	NA	363	0.212	420.694	NA	NA	NA	1101.66	NA	318.1	NA	523.2870654	NA	307.4255792	M8_p20	1.085714286	1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.211	363	0	0	NA	10qD3	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	sgMsh2	cell line
chr10	40227566	40227566	T	G	ENSMUST00000183309.7	1	ENSMUSG00000038510	missense	S/R	197	Rpf2	ENSMUST00000183309.7:c.589A>C	ENSMUSP00000138581.1:p.Ser197Arg	H-2-Kb	9	7	5	VYFRRYKLL	VYFRSYKLL	SMM	18.035	62.103	3.443	137	0.19	20.457	61.271	2.995	60.44	22.11	37.5	28	62.10263106	18.03474475	72.98775406	18.8039895	M8_p20	-0.542857143	-0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.202	137	0	0	NA	10qB1	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	0.91305861	sgMsh2	cell line
chr11	34688463	34688463	A	T	ENSMUST00000093193.11	1	ENSMUSG00000020143	missense	L/M	708	Dock2	ENSMUST00000093193.11:c.2122T>A	ENSMUSP00000090884.5:p.Leu708Met	H-2-Kb	9	11	1	MAYKKLMTV	LAYKKLMTV	NetMHCpan	53.3	93.4	1.752	314	0.331	111.459	136.253	1.222	92.9	63.29	93.4	53.3	179.1059444	159.628341	191.9773533	191.9773533	M8_p20	0.014285714	0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.321	314	0	0	NA	11qA4	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	2	1	sgMsh2	cell line
chr10	129626025	129626025	A	G	ENSMUST00000204979.2	2	ENSMUSG00000095002	missense	L/P	12	Olfr798	ENSMUST00000204979.2:c.35T>C	ENSMUSP00000144716.1:p.Leu12Pro	H-2-Kb	9	4	8	TSVSEFIPL	TSVSEFILL	NetMHC	66.41	157	2.364	84	0.262	133.399	221.183	1.658	157	66.41	211.1	85.2	231.2650474	181.5975563	301.4740949	216.3963843	M8_p20	1.342857143	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.264	84	0	0	NA	10qD3	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	sgMsh2	cell line
chr10	26271888	26271888	T	C	ENSMUST00000060716.5	5	ENSMUSG00000051354	missense	L/P	487	Samd3	ENSMUST00000060716.5:c.1460T>C	ENSMUSP00000057805.5:p.Leu487Pro	H-2-Kb	9	6	6	QTFNFPETL	QTFNFLETL	NetMHC	70.68	27.41	0.388	95	0.253	201.184	82.234	0.409	27.41	70.68	32	90.4	132.4677013	311.967965	170.7064772	407.6148523	M8_p20	0.014285714	0.014285714	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.234	95	0	0	NA	10qA4	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr10	40227566	40227566	T	G	ENSMUST00000183309.7	1	ENSMUSG00000038510	missense	S/R	197	Rpf2	ENSMUST00000183309.7:c.589A>C	ENSMUSP00000138581.1:p.Ser197Arg	H-2-Kb	9	6	6	KVYFRRYKL	KVYFRSYKL	NetMHCpan	75.3	43.7	0.58	137	0.19	113.64	99.694	0.877	94.89	98.38	43.7	75.3	104.4984864	137.4390042	121.4087534	128.8991341	M8_p20	-1.271428571	-1.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.202	137	0	0	NA	10qB1	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	0.91305861	sgMsh2	cell line
chr11	34688463	34688463	A	T	ENSMUST00000093193.11	1	ENSMUSG00000020143	missense	L/M	708	Dock2	ENSMUST00000093193.11:c.2122T>A	ENSMUSP00000090884.5:p.Leu708Met	H-2-Kb	9	3	9	IQQHFSATM	IQQHFSATL	NetMHC	108.3	43.99	0.406	314	0.331	432.806	302.966	0.7	43.99	108.3	87	183.1	518.9314595	682.5115418	629.8686601	853.5913393	M8_p20	-0.242857143	-0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.321	314	0	0	NA	11qA4	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	2	1	sgMsh2	cell line
chr10	50754122	50754122	G	T	ENSMUST00000035606.9	5	ENSMUSG00000038774	missense	S/I	1769	Ascc3	ENSMUST00000035606.9:c.5306G>T	ENSMUSP00000036726.8:p.Ser1769Ile	H-2-Kb	9	7	5	IMNPIYYSL	IMNPSYYSL	NetMHCpan	106.8	122.5	1.147	225	0.249	213.697	155.456	0.727	120.49	198.25	122.5	106.8	188.4126249	229.1447967	231.3396105	261.9690589	M8_p20	-0.028571429	0.457142857	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.239	225	0	0	NA	10qB3	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr10	127495153	127495153	TG	T	ENSMUST00000166820.7	5	ENSMUSG00000025404	FS	G/X	866	R3hdm2	ENSMUST00000166820.7:c.2600del	ENSMUSP00000126608.1:p.Gly867ValfsTer42	H-2-Kb	9	22	0	YWVSHYSTI	NA	SMM	111.201	NA	NA	48	0.396	203.294	NA	NA	NA	211.94	NA	419.1	NA	111.2013347	NA	194.6480243	M8_p20	0.271428571	0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.349	48	0	0	NA	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	2	1	sgMsh2	cell line
chr10	130472110	130472110	CA	C	ENSMUST00000164227.3	5	ENSMUSG00000091511	FS	L/X	753	Vmn2r87	ENSMUST00000164227.3:c.2258del	ENSMUSP00000129215.2:p.Leu753TrpfsTer25	H-2-Kb	9	9	3	GSWLWGASL	NA	NetMHCpan	270.2	NA	NA	363	0.212	374.862	NA	NA	NA	300.72	NA	270.2	NA	563.7804345	NA	449.0037829	M8_p20	0.914285714	0.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.211	363	0	0	NA	10qD3	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	sgMsh2	cell line
chr10	76712320	76712320	T	C	ENSMUST00000001147.4	1	ENSMUSG00000001119	missense	K/R	634	Col6a1	ENSMUST00000001147.4:c.1901A>G	ENSMUSP00000001147.4:p.Lys634Arg	H-2-Kb	9	9	3	IARDFIIKV	IAKDFIIKV	NetMHCpan	291.7	586.8	2.012	202	0.203	419.706	907.096	2.161	1152.69	354.96	586.8	291.7	1099.284236	556.045077	714.9077416	484.4511598	M8_p20	0.585714286	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	202	0	0	NA	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	0.904018425	sgMsh2	cell line
chr10	23897365	23897365	T	C	ENSMUST00000041416.7	1	ENSMUSG00000037440	missense	Y/H	97	Vnn1	ENSMUST00000041416.7:c.289T>C	ENSMUSP00000040599.7:p.Tyr97His	H-2-Kb	9	7	5	TIYPHLEEI	TIYPYLEEI	NetMHCpan	162.8	59.8	0.367	93	0.269	280.695	187.481	0.668	155.05	490.72	59.8	162.8	228.6177783	285.1740477	219.9125427	276.216743	M8_p20	-0.685714286	-0.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.281	93	0	0	NA	10qA4	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr10	130472110	130472110	CA	C	ENSMUST00000164227.3	5	ENSMUSG00000091511	FS	L/X	753	Vmn2r87	ENSMUST00000164227.3:c.2258del	ENSMUSP00000129215.2:p.Leu753TrpfsTer25	H-2-Kb	9	17	0	LWLSWLGTF	NA	SMM	245.533	NA	NA	363	0.212	456.634	NA	NA	NA	499.03	NA	2307.2	NA	245.5330734	NA	414.2380608	M8_p20	1.085714286	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.211	363	0	0	NA	10qD3	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	sgMsh2	cell line
chr11	99280234	99280234	A	G	ENSMUST00000017255.3	1	ENSMUSG00000020913	missense	I/T	506	Krt24	ENSMUST00000017255.3:c.1517T>C	ENSMUSP00000017255.3:p.Ile506Thr	H-2-Db	9	10	6	SQVSNTSEV	SQVSNISEV	NetMHC	21.4	18.4	0.86	297	0.266	114.541	104.791	0.915	18.4	21.4	50.5	70	159.0816182	159.0816182	194.7914991	226.7618545	M8_p20	-0.128571429	-0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.271	297	0	0	NA	11qD	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr11	36008549	36008549	T	C	ENSMUST00000102801.7	5	ENSMUSG00000049336	missense	Y/C	2594	Tenm2	ENSMUST00000102801.7:c.7781A>G	ENSMUSP00000099865.1:p.Tyr2594Cys	H-2-Db	9	5	7	SVLNNACYL	SVLNNAYYL	NetMHCpan	29.4	22.1	0.752	199	0.281	58.079	41.36	0.712	16.41	35.69	22.1	29.4	60.62056782	80.46740575	79.53714539	98.30373071	M8_p20	0.514285714	0.642857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.288	199	0	0	NA	11qA4	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr11	43556667	43556667	G	T	ENSMUST00000050574.6	1	ENSMUSG00000044707	missense	R/L	59	Ccnjl	ENSMUST00000050574.6:c.176G>T	ENSMUSP00000058111.6:p.Arg59Leu	H-2-Db	9	9	3	SALHLAIYL	SARHLAIYL	NetMHC	172.76	6022.1	34.858	72	0.264	214.407	4374.189	20.401	6022.1	172.76	8244.8	501.5	2082.667788	190.8182902	2726.277127	237.9961875	M8_p20	1.885714286	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.295	72	0	0	NA	11qB1.1	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr11	58757857	58757857	G	A	ENSMUST00000215071.1	5	ENSMUSG00000107677	missense	S/N	64	Olfr316	ENSMUST00000215071.1:c.191G>A	ENSMUSP00000151136.1:p.Ser64Asn	H-2-Db	9	7	5	YFLLNQLSI	YFLLSQLSI	SMM	53.164	1078.003	20.277	560	0.071	141.124	3409.713	24.161	8143.16	200.67	5247	352.8	1078.003076	53.16428776	1572.425217	81.57742638	M8_p20	1.157142857	1.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.07	560	0	0	NA	11qB1.3	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	1	0.316406449	sgMsh2	cell line
chr11	69355786	69355786	T	C	ENSMUST00000151436.1	5	ENSMUSG00000018474	missense	T/A	96	Chd3	ENSMUST00000151436.1:c.284A>G	ENSMUSP00000118172.1:p.Thr96Ala	H-2-Db	9	3	9	YSYLLYIPA	YSYLLYIPT	SMM	342.468	921.765	2.692	51	0.333	452.354	1122.887	2.482	1324.01	527.51	4853.1	2169.7	921.7645465	342.468002	666.1468828	377.1985373	M8_p20	1.385714286	1.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.297	51	0	0	NA	11qB3	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr11	95969851	95969851	T	G	ENSMUST00000013559.2	1	ENSMUSG00000013415	missense	S/R	359	Igf2bp1	ENSMUST00000013559.2:c.1075A>C	ENSMUSP00000013559.2:p.Ser359Arg	H-2-Db	9	8	4	AAMRLQSHL	AAMSLQSHL	SMM	336.217	330.842	0.984	123	0.203	466.447	489.283	1.049	583.59	561.66	681.7	531.5	330.8415143	336.2172565	394.9753567	401.39319	M8_p20	-0.357142857	0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.213	123	0	0	NA	11qD	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	0.962779623	sgMsh2	cell line
chr11	110296589	110296589	GA	G	ENSMUST00000043961.11	1	ENSMUSG00000018800	FS	F/X	881	Abca5	ENSMUST00000043961.11:c.2643del	ENSMUSP00000047927.5:p.Leu882SerfsTer21	H-2-Kb	8	6	7	QIFMFFSI	QIFMFFLH	NetMHC	26.45	1630.79	61.656	20	0.45	55.014	1714.292	31.161	1630.79	26.45	3917.9	35.6	1797.794304	75.63799359	737.4625996	74.42862571	M8_p20	2.642857143	2.642857143	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.44	20	0	0	NA	11qE1	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	2	1	sgMsh2	cell line
chr11	85559146	85559146	G	T	ENSMUST00000074875.10	5	ENSMUSG00000059439	missense	Q/H	683	Bcas3	ENSMUST00000074875.10:c.2049G>T	ENSMUSP00000074416.4:p.Gln683His	H-2-Kb	8	9	3	AVHYYQLL	AVQYYQLL	NetMHCpan	42.9	94.6	2.205	96	0.26	153.109	204.425	1.335	96.43	55.18	94.6	42.9	312.4208431	272.7344509	367.908651	251.0383085	M8_p20	0.357142857	0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.279	96	0	0	NA	11qC	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr11	66094123	66094123	T	C	ENSMUST00000080665.9	5	ENSMUSG00000056752	missense	R/G	1207	Dnah9	ENSMUST00000080665.9:c.3619A>G	ENSMUSP00000079494.3:p.Arg1207Gly	H-2-Kb	8	10	2	VGQQVAPL	VRQQVAPL	SMM	66.182	315.312	4.764	124	0.266	74.627	1070.287	14.342	1743.62	66.89	2996.9	350.4	315.3116375	66.18201718	396.9538331	82.36448742	M8_p20	0.114285714	0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.27	124	0	0	NA	11qB3	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr11	85559146	85559146	G	T	ENSMUST00000074875.10	5	ENSMUSG00000059439	missense	Q/H	683	Bcas3	ENSMUST00000074875.10:c.2049G>T	ENSMUSP00000074416.4:p.Gln683His	H-2-Kb	8	10	2	VHYYQLLL	VQYYQLLL	NetMHCpan	38.9	33.6	0.864	96	0.26	127.51	109.377	0.858	75.62	91.06	33.6	38.9	143.1330745	163.9607892	225.2890066	276.528565	M8_p20	0.3	0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.279	96	0	0	NA	11qC	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr11	58757857	58757857	G	A	ENSMUST00000215071.1	5	ENSMUSG00000107677	missense	S/N	64	Olfr316	ENSMUST00000215071.1:c.191G>A	ENSMUSP00000151136.1:p.Ser64Asn	H-2-Kb	8	6	6	MYFLLNQL	MYFLLSQL	NetMHCpan	183.7	77.4	0.421	560	0.071	238.921	133.441	0.559	129.56	253.53	77.4	183.7	148.8469706	240.8463117	137.3219621	236.9954455	M8_p20	0.842857143	0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.07	560	0	0	NA	11qB1.3	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	1	0.316406449	sgMsh2	cell line
chr11	116007787	116007787	C	T	ENSMUST00000169928.7	5	ENSMUSG00000020758	missense	L/F	1731	Itgb4	ENSMUST00000169928.7:c.5191C>T	ENSMUSP00000127604.1:p.Leu1731Phe	H-2-Kb	8	9	3	SGFFQNPV	SGLFQNPV	NetMHCpan	86.7	790	9.112	145	0.221	252.258	1355.266	5.373	1954.35	262	790	86.7	1013.304567	242.5157786	1697.227266	392.4099402	M8_p20	0.114285714	0.114285714	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.228	145	0	0	NA	11qE2	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr11	72058021	72058021	G	A	ENSMUST00000075258.12	1	ENSMUSG00000040543	missense	R/W	769	Pitpnm3	ENSMUST00000075258.12:c.2305C>T	ENSMUSP00000074737.6:p.Arg769Trp	H-2-Kb	8	9	3	VVWHWQDL	VVRHWQDL	NetMHCpan	164	1200.7	7.321	154	0.188	222.002	907.754	4.089	1202.31	270.69	1200.7	164	614.8086937	260.4593785	592.570463	183.5439188	M8_p20	-0.571428571	-0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.21	154	0	0	NA	11qB4	chr11-69590981-82929860	4	4	0	0.9	4.068082914	NA	1	0.949219347	sgMsh2	cell line
chr11	110296589	110296589	GA	G	ENSMUST00000043961.11	1	ENSMUSG00000018800	FS	F/X	881	Abca5	ENSMUST00000043961.11:c.2643del	ENSMUSP00000047927.5:p.Leu882SerfsTer21	H-2-Kb	8	7	6	IFMFFSII	IFMFFLHH	NetMHCpan	64.1	5129.6	80.025	20	0.45	274.982	3691.245	13.424	5277.41	286	5129.6	64.1	2252.890066	279.7306149	725.6713881	270.2340064	M8_p20	2.642857143	2.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.44	20	0	0	NA	11qE1	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	2	1	sgMsh2	cell line
chr11	106991295	106991295	T	G	ENSMUST00000018506.12	1	ENSMUSG00000018362	missense	N/T	235	Kpna2	ENSMUST00000018506.12:c.704A>C	ENSMUSP00000018506.6:p.Asn235Thr	H-2-Kb	8	5	7	LTWTLSTL	LTWTLSNL	NetMHCpan	130.2	55.1	0.423	139	0.209	258.487	68.301	0.264	59.38	305.19	55.1	130.2	99.71029474	296.3056959	77.22181412	220.6683258	M8_p20	0.542857143	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.237	139	0	0	NA	11qE1	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr11	110296589	110296589	GA	G	ENSMUST00000043961.11	1	ENSMUSG00000018800	FS	F/X	881	Abca5	ENSMUST00000043961.11:c.2643del	ENSMUSP00000047927.5:p.Leu882SerfsTer21	H-2-Kb	8	12	1	SIILLKML	NA	NetMHC	308.84	NA	NA	20	0.45	359.989	NA	NA	NA	308.84	NA	398.5	NA	354.6010359	NA	365.3759857	M8_p20	2.628571429	2.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.44	20	0	0	NA	11qE1	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	2	1	sgMsh2	cell line
chr11	57528173	57528173	A	T	ENSMUST00000020830.13	1	ENSMUSG00000020522	missense	D/V	53	Mfap3	ENSMUST00000020830.13:c.158A>T	ENSMUSP00000020830.7:p.Asp53Val	H-2-Kb	8	4	8	SAGSYSGV	SAGSYSGD	NetMHC	397.02	22519.42	56.721	153	0.242	446.118	12796.838	28.685	22519.42	397.02	29869.5	1113.8	3074.255792	459.9811133	2458.895091	432.2549746	M8_p20	0.328571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.242	153	0	0	NA	11qB1.3	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr11	69912027	69912027	GC	G	ENSMUST00000061837.10	5	ENSMUSG00000047284	FS	P/X	1474	Neurl4	ENSMUST00000061837.10:c.4424del	ENSMUSP00000053235.4:p.Pro1475LeufsTer92	H-2-Kb	8	73	0	STSAHRNL	NA	SMM	185.242	NA	NA	18	0.222	376.656	NA	NA	NA	489.23	NA	973.3	NA	185.2422298	NA	264.0827294	M8_p20	-1.014285714	-1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.309	18	0	0	NA	11qB3	chr11-69590981-82929860	4	4	0	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr11	58665966	58665966	A	G	ENSMUST00000214392.1	5	ENSMUSG00000063549	missense	M/V	136	Olfr322	ENSMUST00000214392.1:c.406A>G	ENSMUSP00000150990.1:p.Met136Val	H-2-Kb	8	8	4	MVIVSPRL	MVIMSPRL	NetMHCpan	340.9	257.1	0.754	94	0.234	373.126	415.521	1.114	447.63	531.8	257.1	340.9	432.2549746	364.5356443	398.7860888	381.7156799	M8_p20	1.4	1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.246	94	0	0	NA	11qB1.3	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr11	50237259	50237259	T	A	ENSMUST00000102772.3	1	ENSMUSG00000020377	missense	N/I	55	Ltc4s	ENSMUST00000102772.3:c.164A>T	ENSMUSP00000099833.3:p.Asn55Ile	H-2-Kb	8	11	1	ICSEYFPL	NCSEYFPL	SMMPMBEC	163.207	1944.196	11.912	24	0.375	262.12	3149.402	12.015	8197	536.95	3700.2	307.1	2598.603386	217.1400833	1944.195797	163.2074578	M8_p20	0.271428571	0.371428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.353	24	0	0	NA	11qB1.3	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	2	1	sgMsh2	cell line
chr11	110296589	110296589	GA	G	ENSMUST00000043961.11	1	ENSMUSG00000018800	FS	F/X	881	Abca5	ENSMUST00000043961.11:c.2643del	ENSMUSP00000047927.5:p.Leu882SerfsTer21	H-2-Kb	8	9	4	MFFSIILL	NA	SMMPMBEC	260.459	NA	NA	20	0.45	345.613	NA	NA	NA	597	NA	424.7	NA	266.5262568	NA	260.4593785	M8_p20	3.057142857	3.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.44	20	0	0	NA	11qE1	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	2	1	sgMsh2	cell line
chr11	110296589	110296589	GA	G	ENSMUST00000043961.11	1	ENSMUSG00000018800	FS	F/X	881	Abca5	ENSMUST00000043961.11:c.2643del	ENSMUSP00000047927.5:p.Leu882SerfsTer21	H-2-Kb	9	6	7	QIFMFFSII	QIFMFFLHH	NetMHCpan	31.6	7300.7	231.035	20	0.45	48.27	942.485	19.525	1593.73	40.42	7300.7	31.6	248.3762124	56.11900987	291.2393144	81.893607	M8_p20	2.642857143	2.642857143	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.44	20	0	0	NA	11qE1	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	2	1	sgMsh2	cell line
chr11	58665966	58665966	A	G	ENSMUST00000214392.1	5	ENSMUSG00000063549	missense	M/V	136	Olfr322	ENSMUST00000214392.1:c.406A>G	ENSMUSP00000150990.1:p.Met136Val	H-2-Kb	9	11	1	VSPRLCVGL	MSPRLCVGL	NetMHC	41.21	145.2	3.523	94	0.234	262.919	656.418	2.497	145.2	41.21	240.7	111.6	1089.205937	424.7271271	1072.136299	414.2380608	M8_p20	1.114285714	1.114285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.246	94	0	0	NA	11qB1.3	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr11	69355786	69355786	T	C	ENSMUST00000151436.1	5	ENSMUSG00000018474	missense	T/A	96	Chd3	ENSMUST00000151436.1:c.284A>G	ENSMUSP00000118172.1:p.Thr96Ala	H-2-Kb	9	3	9	YSYLLYIPA	YSYLLYIPT	NetMHC	118.69	177.25	1.493	51	0.333	153.349	138.424	0.903	177.25	118.69	236	177.6	98.88035114	153.5005727	99.59785837	153.196908	M8_p20	1.385714286	1.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.297	51	0	0	NA	11qB3	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr11	67211360	67211360	C	A	ENSMUST00000124516.7	1	ENSMUSG00000056328	missense	R/S	826	Myh1	ENSMUST00000124516.7:c.2476C>A	ENSMUSP00000117569.1:p.Arg826Ser	H-2-Kb	9	6	6	IQYNVSAFM	IQYNVRAFM	NetMHC	125.35	144.71	1.154	315	0.2	385.659	420.869	1.091	144.71	125.35	131.9	140.2	830.0609824	631.1171763	697.02764	656.5230826	M8_p20	0.728571429	0.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.194	315	0	0	NA	11qB3	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	1	0.876897873	sgMsh2	cell line
chr11	69355786	69355786	T	C	ENSMUST00000151436.1	5	ENSMUSG00000018474	missense	T/A	96	Chd3	ENSMUST00000151436.1:c.284A>G	ENSMUSP00000118172.1:p.Thr96Ala	H-2-Kb	9	4	8	SYLLYIPAL	SYLLYIPTL	NetMHCpan	75	70.6	0.941	51	0.333	164.029	182.509	1.113	155.07	130.31	70.6	75	209.947158	197.7470439	244.4837509	227.1171867	M8_p20	2.114285714	2.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.297	51	0	0	NA	11qB3	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr11	50237259	50237259	T	A	ENSMUST00000102772.3	1	ENSMUSG00000020377	missense	N/I	55	Ltc4s	ENSMUST00000102772.3:c.164A>T	ENSMUSP00000099833.3:p.Asn55Ile	H-2-Kb	9	10	2	VICSEYFPL	VNCSEYFPL	SMM	116.174	87.722	0.755	24	0.375	137.523	100.849	0.733	107.02	148.79	115.7	213.3	87.72229799	116.1742828	94.67820161	126.255411	M8_p20	0.271428571	1.2	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.353	24	0	0	NA	11qB1.3	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	2	1	sgMsh2	cell line
chr11	61546578	61546578	A	C	ENSMUST00000179936.7	1	ENSMUSG00000001036	missense	I/S	56	Epn2	ENSMUST00000179936.7:c.167T>G	ENSMUSP00000136950.1:p.Ile56Ser	H-2-Kb	9	6	6	VAFSESMSM	VAFSEIMSM	NetMHCpan	123.9	82.3	0.664	110	0.164	145.532	154.465	1.061	140.62	155.51	82.3	123.9	168.310031	135.5532704	254.8296748	263.7849417	M8_p20	0.1	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.151	110	0	0	NA	11qB2	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	1	0.682533911	sgMsh2	cell line
chr11	116047690	116047690	T	C	ENSMUST00000021116.11	1	ENSMUSG00000020770	missense	F/L	40	Unk	ENSMUST00000021116.11:c.118T>C	ENSMUSP00000021116.5:p.Phe40Leu	H-2-Kb	9	3	9	QHYTYLKEL	QHYTYLKEF	NetMHC	157.48	600.28	3.812	129	0.225	176.351	480.118	2.723	600.28	157.48	601.2	194.9	266.1399065	157.8010905	359.9564831	208.0894201	M8_p20	-0.442857143	-0.442857143	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.221	129	0	0	NA	11qE2	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	0.99894036	sgMsh2	cell line
chr11	95969851	95969851	T	G	ENSMUST00000013559.2	1	ENSMUSG00000013415	missense	S/R	359	Igf2bp1	ENSMUST00000013559.2:c.1075A>C	ENSMUSP00000013559.2:p.Ser359Arg	H-2-Kb	9	8	4	AAMRLQSHL	AAMSLQSHL	NetMHC	159.08	222.94	1.401	123	0.203	409.595	316.523	0.773	222.94	159.08	226.5	212.3	406.5462879	606.8900259	544.816184	635.696763	M8_p20	-0.357142857	0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.213	123	0	0	NA	11qD	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	0.962779623	sgMsh2	cell line
chr11	85559146	85559146	G	T	ENSMUST00000074875.10	5	ENSMUSG00000059439	missense	Q/H	683	Bcas3	ENSMUST00000074875.10:c.2049G>T	ENSMUSP00000074416.4:p.Gln683His	H-2-Kb	9	8	4	EAVHYYQLL	EAVQYYQLL	NetMHC	176.26	147.94	0.839	96	0.26	222.003	265.948	1.198	147.94	176.26	275.3	229.1	294.5167504	244.4049514	256.5960697	214.9067221	M8_p20	0.357142857	0.357142857	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.279	96	0	0	NA	11qC	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr11	85559146	85559146	G	T	ENSMUST00000074875.10	5	ENSMUSG00000059439	missense	Q/H	683	Bcas3	ENSMUST00000074875.10:c.2049G>T	ENSMUSP00000074416.4:p.Gln683His	H-2-Kb	9	9	3	AVHYYQLLL	AVQYYQLLL	NetMHCpan	141.3	330.7	2.34	96	0.26	236.854	440.824	1.861	330.62	202.62	330.7	141.3	550.9472251	271.0878168	664.1252616	325.2744865	M8_p20	0.3	0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.279	96	0	0	NA	11qC	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr11	87035223	87035223	T	C	ENSMUST00000020804.7	1	ENSMUSG00000061666	missense	T/A	299	Gdpd1	ENSMUST00000020804.7:c.895A>G	ENSMUSP00000020804.7:p.Thr299Ala	H-2-Kb	9	9	3	VMADYPTKL	VMTDYPTKL	NetMHCpan	134	233	1.739	103	0.33	178.725	248.628	1.391	288.51	222.06	233	134	258.8868552	177.8729877	238.3691237	179.5767056	M8_p20	-0.771428571	0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.333	103	0	0	NA	11qC	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	2	1	sgMsh2	cell line
chr11	69944246	69944246	A	G	ENSMUST00000018710.12	1	ENSMUSG00000018566	missense	M/T	380	Slc2a4	ENSMUST00000018710.12:c.1139T>C	ENSMUSP00000018710.6:p.Met380Thr	H-2-Kb	9	11	1	TSYVSIVAI	MSYVSIVAI	NetMHCpan	173.5	137.8	0.794	24	0.208	288.038	313.641	1.089	235.44	232.32	137.8	173.5	391.8411118	385.5760057	405.7420321	343.7557727	M8_p20	2.442857143	2.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.208	24	0	0	NA	11qB3	chr11-69590981-82929860	4	4	0	0.9	4.068082914	NA	1	0.940179162	sgMsh2	cell line
chr11	110296589	110296589	GA	G	ENSMUST00000043961.11	1	ENSMUSG00000018800	FS	F/X	881	Abca5	ENSMUST00000043961.11:c.2643del	ENSMUSP00000047927.5:p.Leu882SerfsTer21	H-2-Kb	9	8	5	FMFFSIILL	NA	SMM	143.255	NA	NA	20	0.45	208.082	NA	NA	NA	240.27	NA	758.8	NA	143.2550696	NA	175.8935847	M8_p20	3.057142857	3.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.44	20	0	0	NA	11qE1	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	2	1	sgMsh2	cell line
chr11	110296589	110296589	GA	G	ENSMUST00000043961.11	1	ENSMUSG00000018800	FS	F/X	881	Abca5	ENSMUST00000043961.11:c.2643del	ENSMUSP00000047927.5:p.Leu882SerfsTer21	H-2-Kb	9	5	8	VQIFMFFSI	VQIFMFFLH	NetMHCpan	161.2	10150.8	62.97	20	0.45	301.113	3944.725	13.1	6792.34	352.89	10150.8	161.2	1047.393803	296.558243	1097.109561	305.6680173	M8_p20	2.642857143	2.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.44	20	0	0	NA	11qE1	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	2	1	sgMsh2	cell line
chr11	110296589	110296589	GA	G	ENSMUST00000043961.11	1	ENSMUSG00000018800	FS	F/X	881	Abca5	ENSMUST00000043961.11:c.2643del	ENSMUSP00000047927.5:p.Leu882SerfsTer21	H-2-Kb	9	7	6	IFMFFSIIL	IFMFFLHHS	SMM	133.693	352.46	2.636	20	0.45	274.86	1226.151	4.461	2075.53	359.94	1860.4	416.4	352.4601324	133.6934098	591.9022625	189.7798067	M8_p20	2.785714286	2.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.44	20	0	0	NA	11qE1	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	2	1	sgMsh2	cell line
chr11	58757857	58757857	G	A	ENSMUST00000215071.1	5	ENSMUSG00000107677	missense	S/N	64	Olfr316	ENSMUST00000215071.1:c.191G>A	ENSMUSP00000151136.1:p.Ser64Asn	H-2-Kb	9	5	7	PMYFLLNQL	PMYFLLSQL	SMM	69.841	60.969	0.873	560	0.071	256.406	183.625	0.716	298.82	430.35	478.1	884.5	60.9691303	69.84092778	68.43054518	82.46126636	M8_p20	0.842857143	0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.07	560	0	0	NA	11qB1.3	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	1	0.316406449	sgMsh2	cell line
chr11	102061618	102061618	G	A	ENSMUST00000017458.10	1	ENSMUSG00000017314	missense	A/V	343	Mpp2	ENSMUST00000017458.10:c.1028C>T	ENSMUSP00000017458.3:p.Ala343Val	H-2-Kb	9	5	7	LIYEEVVRM	LIYEEVARM	NetMHCpan	384	183	0.477	25	0.32	422.457	242.216	0.573	185.13	506.32	183	384	299.3022626	431.6283877	304.9650004	413.2853397	M8_p20	-0.357142857	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.312	25	0	0	NA	11qD	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr11	114987405	114987405	T	G	ENSMUST00000045075.2	1	ENSMUSG00000034641	missense	T/P	94	Cd300ld	ENSMUST00000045075.2:c.280A>C	ENSMUSP00000047022.2:p.Thr94Pro	H-2-Kb	9	4	8	RDFIFTVPM	RDFIFTVTM	SMMPMBEC	413.285	752.056	1.82	354	0.243	465.648	927.044	1.991	2749.39	1529.58	988.9	447	865.1870294	484.2950164	752.0556875	413.2853397	M8_p20	1.985714286	1.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.261	354	0	0	NA	11qE2	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr12	73545433	73545433	T	C	ENSMUST00000042975.6	NA	ENSMUSG00000034435	missense	I/V	303	Tmem30b	ENSMUST00000042975.6:c.907A>G	ENSMUSP00000037476.5:p.Ile303Val	H-2-Db	9	10	2	IVLSNISWM	IILSNISWM	NetMHC	62.9	120.85	1.921	167	0.168	162.708	318.687	1.959	120.85	62.9	261	128.8	376.374334	196.6165177	394.0669386	225.2008368	M8_p20	0.6	1.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.174	167	0	0	NA	12qC3	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.78649603	sgMsh2	cell line
chr12	69190025	69190025	GT	G	ENSMUST00000021356.5	1	ENSMUSG00000020973	FS	T/X	770	Dnaaf2	ENSMUST00000021356.5:c.2308del	ENSMUSP00000021356.5:p.Thr770LeufsTer12	H-2-Db	9	5	7	SSLLNKLWF	SSLLNKTVV	NetMHC	102.74	8.12	0.079	488	0.205	148.467	27.724	0.187	8.12	102.74	17.2	273.1	38.24899249	138.2356312	40.41755147	158.6974688	M8_p20	0.842857143	0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.199	488	0	0	NA	12qC2	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.899498333	sgMsh2	cell line
chr12	98275382	98275382	T	C	ENSMUST00000075072.5	1	ENSMUSG00000021886	missense	M/T	98	Gpr65	ENSMUST00000075072.5:c.293T>C	ENSMUSP00000074581.4:p.Met98Thr	H-2-Kb	8	6	6	VFFTYTNF	VFFTYMNF	SMMPMBEC	20.358	18.019	0.885	283	0.18	21.686	17.92	0.826	17.82	22.25	45.7	37.4	16.50973111	21.12224132	18.01938647	20.35822922	M8_p20	0.314285714	0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.19	283	0	0	NA	12qE	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.858817504	sgMsh2	cell line
chr12	108361203	108361203	T	C	ENSMUST00000021684.5	1	ENSMUSG00000021259	missense	F/L	425	Cyp46a1	ENSMUST00000021684.5:c.1273T>C	ENSMUSP00000021684.4:p.Phe425Leu	H-2-Kb	8	11	1	LTYFPFSL	FTYFPFSL	NetMHCpan	22.8	31.8	1.395	141	0.177	102.142	85.132	0.833	67.05	60.82	31.8	22.8	103.2143305	143.4630303	134.1961326	157.666708	M8_p20	0.714285714	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.177	141	0	0	NA	12qF1	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.800056306	sgMsh2	cell line
chr12	75716177	75716177	C	A	ENSMUST00000021450.5	1	ENSMUSG00000021054	missense	G/V	410	Sgpp1	ENSMUST00000021450.5:c.1229G>T	ENSMUSP00000021450.4:p.Gly410Val	H-2-Kb	8	8	4	ITYVMVGF	ITYGMVGF	NetMHCpan	71.7	131.8	1.838	275	0.2	126.749	402.15	3.173	373.04	92.9	131.8	71.7	585.787365	231.6007706	431.2608157	160.597951	M8_p20	1.528571429	1.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.197	275	0	0	NA	12qC3	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.890458149	sgMsh2	cell line
chr12	24955384	24955384	T	C	ENSMUST00000110942.10	1	ENSMUSG00000020646	missense	V/A	386	Mboat2	ENSMUST00000110942.10:c.1157T>C	ENSMUSP00000106567.3:p.Val386Ala	H-2-Kb	8	5	7	LTFLTGAL	LTFLTGVL	SMMPMBEC	126.398	284.276	2.249	301	0.126	148.313	332.574	2.242	970.17	184.97	290.4	137.5	374.7485835	159.1255801	284.2758718	126.3979412	M8_p20	1.485714286	1.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.116	301	0	0	NA	12qA1.3	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.524330687	sgMsh2	cell line
chr12	69190025	69190025	GT	G	ENSMUST00000021356.5	1	ENSMUSG00000020973	FS	T/X	770	Dnaaf2	ENSMUST00000021356.5:c.2308del	ENSMUSP00000021356.5:p.Thr770LeufsTer12	H-2-Kb	8	14	0	KTYLTLTL	NA	NetMHCpan	98.5	NA	NA	488	0.205	204.29	NA	NA	NA	217.21	NA	98.5	NA	205.466016	NA	203.114066	M8_p20	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.199	488	0	0	NA	12qC2	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.899498333	sgMsh2	cell line
chr12	103104843	103104843	CA	C	ENSMUST00000101099.11	1	ENSMUSG00000021198	FS	Q/X	1330	Unc79	ENSMUST00000101099.11:c.3994del	ENSMUSP00000098659.5:p.Met1332CysfsTer59	H-2-Kb	8	32	0	ITLTWANT	NA	SMMPMBEC	112.912	NA	NA	273	0.22	220.203	NA	NA	NA	238.69	NA	942.4	NA	201.7158386	NA	112.911974	M8_p20	-0.128571429	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.205	273	0	0	NA	12qE	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.926618886	sgMsh2	cell line
chr12	72556654	72556654	T	A	ENSMUST00000044352.7	1	ENSMUSG00000034501	missense	S/T	489	Pcnx4	ENSMUST00000044352.7:c.1465T>A	ENSMUSP00000038916.6:p.Ser489Thr	H-2-Kb	8	10	2	VTIGFTRA	VSIGFTRA	SMMPMBEC	216.641	129.64	0.598	207	0.188	273.909	146.801	0.536	79.74	275.71	178.1	397.8	163.9607892	272.1071791	129.6402918	216.6406749	M8_p20	0.4	0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.178	207	0	0	NA	12qC3	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.804576399	sgMsh2	cell line
chr12	79261656	79261656	C	T	ENSMUST00000021547.7	1	ENSMUSG00000066440	missense	D/N	1705	Zfyve26	ENSMUST00000021547.7:c.5113G>A	ENSMUSP00000021547.6:p.Asp1705Asn	H-2-Kb	8	6	6	IGFTLNEV	IGFTLDEV	NetMHCpan	303.9	1187.3	3.907	197	0.157	375.252	970.102	2.585	1333.11	383.96	1187.3	303.9	696.209588	367.908651	752.9046857	382.5956254	M8_p20	0.385714286	0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.156	197	0	0	NA	12qC3	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.705134372	sgMsh2	cell line
chr12	54685943	54685943	TG	T	ENSMUST00000161592.7	1	ENSMUSG00000054302	FS	H/X	127	Eapp	ENSMUST00000161592.7:c.381del	ENSMUSP00000123698.1:p.His127GlnfsTer52	H-2-Kb	8	53	0	SLFQTVML	NA	SMMPMBEC	306.719	NA	NA	152	0.421	372.068	NA	NA	NA	617.01	NA	379.6	NA	364.5356443	NA	306.71852	M8_p20	1.757142857	1.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.421	152	0	0	NA	12qC1	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	2	1	sgMsh2	cell line
chr11	117772845	117772845	T	C	ENSMUST00000026659.9	1	ENSMUSG00000025572	missense	I/V	514	Tmc6	ENSMUST00000026659.9:c.1540A>G	ENSMUSP00000026659.3:p.Ile514Val	H-2-Kb	8	10	2	LVLKMAVL	LILKMAVL	SMMPMBEC	395.13	281.67	0.713	72	0.208	457.257	401.56	0.878	565.93	825.08	490.7	423.9	312.4208431	490.6140712	281.6696149	395.1299959	M8_p20	2.257142857	2.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.239	72	0	0	NA	11qE2	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr12	31708932	31708932	A	G	ENSMUST00000236002.1	NA	ENSMUSG00000044067	missense	I/T	397	Gpr22	ENSMUST00000236002.1:c.1190T>C	ENSMUSP00000158030.1:p.Ile397Thr	H-2-Kb	8	8	4	GTTTFHPL	GTTIFHPL	SMMPMBEC	181.443	200.789	1.107	485	0.177	344.511	294.142	0.854	1035.85	893.41	338.4	454.2	249.8848923	234.8226582	200.7890385	181.4429089	M8_p20	-0.042857143	-0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.182	485	0	0	NA	12qA3	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.822656767	sgMsh2	cell line
chr12	38173837	38173837	GT	G	ENSMUST00000040500.8	1	ENSMUSG00000036095	FS	G/X	418	Dgkb	ENSMUST00000040500.8:c.1256del	ENSMUSP00000037900.7:p.Leu419CysfsTer13	H-2-Kb	9	13	0	RSLLFLAHI	NA	NetMHC	16.58	NA	NA	270	0.204	124.3	NA	NA	NA	16.58	NA	25.7	NA	222.8999649	NA	250.7552301	M8_p20	2.471428571	2.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.184	270	0	0	NA	12qA3	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.831696951	sgMsh2	cell line
chr12	98275382	98275382	T	C	ENSMUST00000075072.5	1	ENSMUSG00000021886	missense	M/T	98	Gpr65	ENSMUST00000075072.5:c.293T>C	ENSMUSP00000074581.4:p.Met98Thr	H-2-Kb	9	5	7	SVFFTYTNF	SVFFTYMNF	NetMHCpan	31	33.7	1.087	283	0.18	50.82	51.291	1.009	31.09	34.48	33.7	31	68.88267433	67.15989369	103.5738214	93.37916798	M8_p20	0.314285714	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.19	283	0	0	NA	12qE	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.858817504	sgMsh2	cell line
chr12	31709410	31709410	T	C	ENSMUST00000236002.1	NA	ENSMUSG00000044067	missense	S/G	238	Gpr22	ENSMUST00000236002.1:c.712A>G	ENSMUSP00000158030.1:p.Ser238Gly	H-2-Kb	9	9	3	STGEYYTEL	STSEYYTEL	NetMHC	37.25	32.97	0.885	320	0.191	75.815	105.246	1.388	32.97	37.25	31.7	45.4	181.1798935	108.9205937	177.521108	106.2306894	M8_p20	-0.985714286	-0.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.202	320	0	0	NA	12qA3	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.91305861	sgMsh2	cell line
chr11	120134832	120134832	A	G	ENSMUST00000103018.10	1	ENSMUSG00000061306	missense	M/T	226	Slc38a10	ENSMUST00000103018.10:c.677T>C	ENSMUSP00000099307.4:p.Met226Thr	H-2-Kb	9	11	1	TSSIFASSL	MSSIFASSL	NetMHCpan	80.7	63.8	0.791	207	0.155	321.872	325.304	1.011	80.3	100.18	63.8	80.7	570.3087043	561.1900987	641.5787927	543.5631415	M8_p20	1.5	1.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.16	207	0	0	NA	11qE2	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	0.72321474	sgMsh2	cell line
chr12	84106461	84106461	G	T	ENSMUST00000056822.3	1	ENSMUSG00000043487	missense	G/V	159	Acot6	ENSMUST00000056822.3:c.476G>T	ENSMUSP00000056131.3:p.Gly159Val	H-2-Kb	9	11	1	VIIDLYGSI	GIIDLYGSI	NetMHCpan	77.9	1628.7	20.908	257	0.175	151.163	1429.64	9.458	2254.44	116.01	1628.7	77.9	1230.580418	226.5217979	933.7916798	186.3159349	M8_p20	0.971428571	1.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.169	257	0	0	NA	12qD1	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.763895569	sgMsh2	cell line
chr12	31547124	31547124	T	C	ENSMUST00000001253.7	1	ENSMUSG00000020651	missense	N/S	248	Slc26a4	ENSMUST00000001253.7:c.743A>G	ENSMUSP00000001253.7:p.Asn248Ser	H-2-Kb	9	5	7	VSTKNYSGI	VSTKNYNGI	NetMHC	120.76	277.9	2.301	225	0.133	269.151	316.632	1.176	277.9	120.76	586.2	300.6	296.558243	258.8868552	336.7053368	279.4151821	M8_p20	-0.871428571	-0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.14	225	0	0	NA	12qA2	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.632812898	sgMsh2	cell line
chr12	69190025	69190025	GT	G	ENSMUST00000021356.5	1	ENSMUSG00000020973	FS	T/X	770	Dnaaf2	ENSMUST00000021356.5:c.2308del	ENSMUSP00000021356.5:p.Thr770LeufsTer12	H-2-Kb	9	11	1	LWFKTYLTL	NA	SMM	52.736	NA	NA	488	0.205	87.638	NA	NA	NA	123.24	NA	86.1	NA	52.73634174	NA	89.17641311	M8_p20	0.542857143	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.199	488	0	0	NA	12qC2	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.899498333	sgMsh2	cell line
chr12	72556654	72556654	T	A	ENSMUST00000044352.7	1	ENSMUSG00000034501	missense	S/T	489	Pcnx4	ENSMUST00000044352.7:c.1465T>A	ENSMUSP00000038916.6:p.Ser489Thr	H-2-Kb	9	10	2	VTIGFTRAF	VSIGFTRAF	NetMHC	135.99	77.66	0.571	207	0.188	241.68	150.693	0.624	77.66	135.99	132.3	200.8	169.0869148	282.5595563	216.3963843	351.7628732	M8_p20	0.9	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.178	207	0	0	NA	12qC3	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.804576399	sgMsh2	cell line
chr12	75716177	75716177	C	A	ENSMUST00000021450.5	1	ENSMUSG00000021054	missense	G/V	410	Sgpp1	ENSMUST00000021450.5:c.1229G>T	ENSMUSP00000021450.4:p.Gly410Val	H-2-Kb	9	11	1	VMVGFSITF	GMVGFSITF	SMM	93.349	507.119	5.433	275	0.2	171.911	1429.349	8.314	2096.18	191.68	3962.6	381.5	507.1191374	93.34907095	762.5178243	152.1423079	M8_p20	1.771428571	2.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.197	275	0	0	NA	12qC3	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.890458149	sgMsh2	cell line
chr12	55707969	55707969	A	G	ENSMUST00000085385.6	1	ENSMUSG00000021027	missense	L/S	1179	Ralgapa1	ENSMUST00000085385.6:c.3536T>C	ENSMUSP00000082503.5:p.Leu1179Ser	H-2-Kb	9	4	8	YNIMHCGSL	YNIMHCGLL	NetMHCpan	97.8	114.6	1.172	181	0.166	248.131	188.429	0.759	147.64	214.91	114.6	97.8	277.4022632	379.4110717	229.2186762	281.3519957	M8_p20	1.185714286	1.185714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.185	181	0	0	NA	12qC1	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.836217043	sgMsh2	cell line
chr12	111678648	111678648	A	G	ENSMUST00000084947.9	1	ENSMUSG00000060950	missense	Y/C	6	Trmt61a	ENSMUST00000084947.9:c.17A>G	ENSMUSP00000082011.3:p.Tyr6Cys	H-2-Kb	9	1	6	MSFVACEEL	MSFVAYEEL	NetMHCpan	242.1	23.8	0.098	141	0.121	359.464	57.617	0.16	18.72	290.27	23.8	242.1	91.43448014	428.6570788	121.6886295	527.5334467	M8_p20	1.157142857	1.271428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.146	141	0	0	NA	12qF1	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.65993345	sgMsh2	cell line
chr12	98275382	98275382	T	C	ENSMUST00000075072.5	1	ENSMUSG00000021886	missense	M/T	98	Gpr65	ENSMUST00000075072.5:c.293T>C	ENSMUSP00000074581.4:p.Met98Thr	H-2-Kb	9	11	1	TNFYSSTAF	MNFYSSTAF	SMM	318.5	323.676	1.016	283	0.18	365.539	317.878	0.87	312.08	327.2	253.8	411.6	323.6756285	318.5004131	476.7053215	403.8778168	M8_p20	0.542857143	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.19	283	0	0	NA	12qE	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.858817504	sgMsh2	cell line
chr12	24955384	24955384	T	C	ENSMUST00000110942.10	1	ENSMUSG00000020646	missense	V/A	386	Mboat2	ENSMUST00000110942.10:c.1157T>C	ENSMUSP00000106567.3:p.Val386Ala	H-2-Kb	9	5	7	LTFLTGALM	LTFLTGVLM	NetMHC	354.25	977.61	2.76	301	0.126	486.696	929.583	1.91	977.61	354.25	1440.3	432.5	780.0276543	540.8913049	881.5561915	650.5040428	M8_p20	1.857142857	1.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.116	301	0	0	NA	12qA1.3	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.524330687	sgMsh2	cell line
chr12	51999859	51999859	T	G	ENSMUST00000021339.7	1	ENSMUSG00000020956	missense	N/H	66	Dtd2	ENSMUST00000021339.7:c.196A>C	ENSMUSP00000021339.7:p.Asn66His	H-2-Kb	9	6	6	VNTLLHVKL	VNTLLNVKL	NetMHCpan	212.6	1257.5	5.915	75	0.16	402.088	1117.492	2.779	1647.25	460.42	1257.5	212.6	977.4847712	462.4981501	708.3534281	343.7557727	M8_p20	1.114285714	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.196	75	0	0	NA	12qC1	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.885938057	sgMsh2	cell line
chr13	75878849	75878849	T	G	ENSMUST00000022078.11	1	ENSMUSG00000021589	missense	K/N	468	Rhobtb3	ENSMUST00000022078.11:c.1404A>C	ENSMUSP00000022078.5:p.Lys468Asn	H-2-Db	9	7	5	YGVSNETFL	YGVSKETFL	NetMHC	4.07	552.12	135.656	235	0.328	38.329	1708.94	44.587	552.12	4.07	1286.7	11.1	2131.179353	65.55714019	2236.505652	66.61468828	M8_p20	0.328571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.336	235	0	0	NA	13qC1	chr13-3556297-119495179	4	2	2	0.9	4.068082914	NA	2	1	sgMsh2	cell line
chr14	53649839	53649839	GT	G	ENSMUST00000103660.3	NA	ENSMUSG00000076848	FS	V/X	72	Trav15-2-dv6-2	ENSMUST00000103660.3:c.218del	ENSMUSP00000100437.2:p.Phe73SerfsTer20	H-2-Db	9	12	1	SLFTNLLLI	NA	NetMHCpan	177	NA	NA	211	0.36	251.951	NA	NA	NA	363.11	NA	177	NA	266.4526231	NA	237.4488114	M8_p20	2.071428571	2.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.369	211	0	0	NA	14qC2	chr14-53336808-75777336	3	2	1	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr12	117974938	117974938	G	A	ENSMUST00000084806.6	1	ENSMUSG00000018581	missense	A/V	3265	Dnah11	ENSMUST00000084806.6:c.9794C>T	ENSMUSP00000081867.6:p.Ala3265Val	H-2-Kb	8	7	5	KSFAVAGL	KSFAAAGL	NetMHC	11.66	16.83	1.443	149	0.141	23.502	30.038	1.278	16.83	11.66	34.2	31.4	28.6906244	22.52890066	31.38629122	24.47597495	M8_p20	1.885714286	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.158	149	0	0	NA	12qF2	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.714174556	sgMsh2	cell line
chr14	53649839	53649839	GT	G	ENSMUST00000103660.3	NA	ENSMUSG00000076848	FS	V/X	72	Trav15-2-dv6-2	ENSMUST00000103660.3:c.218del	ENSMUSP00000100437.2:p.Phe73SerfsTer20	H-2-Kb	8	10	3	MVSLFTNL	NA	NetMHC	20.17	NA	NA	211	0.36	40.455	NA	NA	NA	20.17	NA	22.6	NA	58.30959165	NA	60.21989584	M8_p20	1.371428571	1.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.369	211	0	0	NA	14qC2	chr14-53336808-75777336	3	2	1	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr14	52036009	52036009	A	G	ENSMUST00000214071.1	5	ENSMUSG00000044286	missense	M/T	34	Olfr221	ENSMUST00000214071.1:c.101T>C	ENSMUSP00000150675.1:p.Met34Thr	H-2-Kb	8	10	2	VTYAITVL	VMYAITVL	NetMHCpan	26.2	23.8	0.908	143	0.266	60.149	92.464	1.537	54.39	47.73	23.8	26.2	137.3219621	75.63799359	130.5389154	72.56713881	M8_p20	1.657142857	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.267	143	0	0	NA	14qC2	chr14-43673573-52852156	3	2	1	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr14	65975611	65975611	T	G	ENSMUST00000022616.13	1	ENSMUSG00000022037	missense	F/V	149	Clu	ENSMUST00000022616.13:c.445T>G	ENSMUSP00000022616.6:p.Phe149Val	H-2-Kb	8	8	4	SSPVYFWM	SSPFYFWM	NetMHCpan	60.6	40.4	0.667	75	0.293	147.752	201.93	1.367	223.25	116.55	40.4	60.6	180.6092545	178.9534189	234.2825811	206.8902384	M8_p20	0.614285714	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.303	75	0	0	NA	14qD1	chr14-53336808-75777336	3	2	1	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr14	30565598	30565598	A	C	ENSMUST00000022529.7	1	ENSMUSG00000021957	missense	D/A	183	Tkt	ENSMUST00000022529.7:c.548A>C	ENSMUSP00000022529.6:p.Asp183Ala	H-2-Kb	8	8	4	AIFAINRL	AIFDINRL	NetMHCpan	63.2	123.2	1.949	50	0.32	133.004	297.159	2.234	429.52	121.55	123.2	63.2	314.5864409	164.7175978	279.7306149	144.4574685	M8_p20	1.342857143	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.363	50	0	0	NA	14qB	chr14-19751082-41183403	3	2	1	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr14	53649839	53649839	GT	G	ENSMUST00000103660.3	NA	ENSMUSG00000076848	FS	V/X	72	Trav15-2-dv6-2	ENSMUST00000103660.3:c.218del	ENSMUSP00000100437.2:p.Phe73SerfsTer20	H-2-Kb	8	11	2	VSLFTNLL	NA	NetMHCpan	51.6	NA	NA	211	0.36	158.7	NA	NA	NA	122.98	NA	51.6	NA	194.4195797	NA	220.1608027	M8_p20	1.314285714	1.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.369	211	0	0	NA	14qC2	chr14-53336808-75777336	3	2	1	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr13	114977646	114977646	T	C	ENSMUST00000061673.8	1	ENSMUSG00000042284	missense	T/A	908	Itga1	ENSMUST00000061673.8:c.2722A>G	ENSMUSP00000077132.6:p.Thr908Ala	H-2-Kb	8	5	7	IIFQFNAS	IIFQFNTS	SMM	20.785	34.573	1.663	332	0.22	85.308	143.189	1.678	244.34	136.83	233.2	298.4	34.57323355	20.78452003	53.17897962	33.78625068	M8_p20	0.585714286	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.229	332	0	0	NA	13qD2.2	chr13-3556297-119495179	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr13	34044462	34044462	T	C	ENSMUST00000040656.7	1	ENSMUSG00000038286	missense	V/A	49	Bphl	ENSMUST00000040656.7:c.146T>C	ENSMUSP00000046168.6:p.Val49Ala	H-2-Kb	8	6	6	VAVNGAHL	VAVNGVHL	NetMHC	146.35	634.29	4.334	220	0.195	268.319	744.618	2.775	634.29	146.35	812	377.4	872.4489012	301.8144301	677.2359439	234.8226582	M8_p20	0.642857143	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.208	220	0	0	NA	13qA3.3	chr13-3556297-119495179	4	2	2	0.9	4.068082914	NA	1	0.940179162	sgMsh2	cell line
chr13	54221267	54221267	TC	T	ENSMUST00000038101.3	1	ENSMUSG00000034987	FS	S/X	374	Hrh2	ENSMUST00000038101.3:c.1122del	ENSMUSP00000038170.3:p.Phe375SerfsTer53	H-2-Kb	8	26	0	SNHHYISV	NA	NetMHCpan	84.2	NA	NA	51	0.353	192.438	NA	NA	NA	148.97	NA	84.2	NA	235.9065504	NA	249.310173	M8_p20	-0.471428571	-0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.351	51	0	0	NA	13qB1	chr13-3556297-119495179	4	2	2	0.9	4.068082914	NA	2	1	sgMsh2	cell line
chr14	66004100	66004100	T	A	ENSMUST00000059970.8	1	ENSMUSG00000034450	missense	H/L	103	Gulo	ENSMUST00000059970.8:c.308A>T	ENSMUSP00000060912.7:p.His103Leu	H-2-Kb	8	11	1	LGLALSNL	HGLALSNL	NetMHC	204.75	1235.08	6.032	62	0.306	230.187	887.134	3.854	1235.08	204.75	1375.1	217.3	539.1877292	243.0748352	512.5544401	245.8895091	M8_p20	1.214285714	1.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.325	62	0	0	NA	14qD1	chr14-53336808-75777336	3	2	1	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr13	22293541	22293541	T	C	ENSMUST00000228382.1	NA	ENSMUSG00000069295	missense	S/P	117	Vmn1r196	ENSMUST00000228382.1:c.349T>C	ENSMUSP00000154358.1:p.Ser117Pro	H-2-Kb	8	9	3	RAPWWGRL	RASWWGRL	NetMHCpan	195.9	896.8	4.578	221	0.199	341.715	1061.965	3.108	1423.61	271.58	896.8	195.9	1129.11974	421.444121	994.8096742	411.8508816	M8_p20	-0.385714286	-0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.187	221	0	0	NA	13qA3.1	chr13-3556297-119495179	4	2	2	0.9	4.068082914	NA	1	0.845257228	sgMsh2	cell line
chr13	116910900	116910900	A	G	ENSMUST00000022239.7	5	ENSMUSG00000021725	missense	L/P	251	Parp8	ENSMUST00000022239.7:c.752T>C	ENSMUSP00000022239.6:p.Leu251Pro	H-2-Kb	8	8	4	IVRPHCSL	IVRLHCSL	SMM	192.637	101.097	0.525	177	0.203	278.151	113.701	0.409	111.86	291	203	380.5	101.0974031	192.6371303	115.5420317	265.3016799	M8_p20	0.057142857	0.157142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.201	177	0	0	NA	13qD2.3	chr13-3556297-119495179	4	2	2	0.9	4.068082914	NA	1	0.908538517	sgMsh2	cell line
chr13	114977646	114977646	T	C	ENSMUST00000061673.8	1	ENSMUSG00000042284	missense	T/A	908	Itga1	ENSMUST00000061673.8:c.2722A>G	ENSMUSP00000077132.6:p.Thr908Ala	H-2-Kb	8	7	5	FQFNASHL	FQFNTSHL	SMM	216.641	318.229	1.469	332	0.22	315.772	435.915	1.38	553.6	386.22	615.6	434.7	318.2291802	216.6406749	295.6242117	245.323979	M8_p20	-0.371428571	-0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.229	332	0	0	NA	13qD2.2	chr13-3556297-119495179	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr13	56629694	56629694	TG	T	ENSMUST00000045173.9	1	ENSMUSG00000035493	FS	L/X	330	Tgfbi	ENSMUST00000045173.9:c.995del	ENSMUSP00000037719.8:p.Gly332AlafsTer79	H-2-Kb	8	24	0	SSPSTGRL	NA	SMMPMBEC	356.238	NA	NA	85	0.424	410.072	NA	NA	NA	460.61	NA	1337.4	NA	359.5340277	NA	356.2377999	M8_p20	-0.714285714	-0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.405	85	0	0	NA	13qB1	chr13-3556297-119495179	4	2	2	0.9	4.068082914	NA	2	1	sgMsh2	cell line
chr13	34044462	34044462	T	C	ENSMUST00000040656.7	1	ENSMUSG00000038286	missense	V/A	49	Bphl	ENSMUST00000040656.7:c.146T>C	ENSMUSP00000046168.6:p.Val49Ala	H-2-Kb	8	11	1	AHLHYQRV	VHLHYQRV	SMM	425.344	112.912	0.265	220	0.195	494.03	124.019	0.251	77.54	524.89	200.5	835	112.911974	425.3436955	135.1263357	463.16955	M8_p20	-1.1	-1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.208	220	0	0	NA	13qA3.3	chr13-3556297-119495179	4	2	2	0.9	4.068082914	NA	1	0.940179162	sgMsh2	cell line
chr13	110260597	110260597	G	T	ENSMUST00000167824.2	1	ENSMUSG00000021700	missense	S/Y	45	Rab3c	ENSMUST00000167824.2:c.134C>A	ENSMUSP00000132945.1:p.Ser45Tyr	H-2-Kb	8	10	2	TYFLFRYA	TSFLFRYA	NetMHCpan	218	21.8	0.1	157	0.178	323.719	27.677	0.085	17.38	527.66	21.8	218	42.6324214	367.0624846	33.55366776	280.3754606	M8_p20	0.585714286	0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.184	157	0	0	NA	13qD2.1	chr13-3556297-119495179	4	2	2	0.9	4.068082914	NA	1	0.831696951	sgMsh2	cell line
chr13	67542395	67542395	TA	T	ENSMUST00000181892.8	1	ENSMUSG00000095432	FS	Y/X	249	Zfp748	ENSMUST00000181892.8:c.745del	ENSMUSP00000137928.1:p.Tyr249ThrfsTer47	H-2-Kb	9	44	0	VAMPFVHSI	NA	NetMHCpan	32.9	NA	NA	127	0.268	254.832	NA	NA	NA	98.41	NA	32.9	NA	411.2538721	NA	441.8247089	M8_p20	1.114285714	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.283	127	0	0	NA	13qB3	chr13-3556297-119495179	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr13	45567073	45567073	T	C	ENSMUST00000180110.8	1	ENSMUSG00000046876	missense	T/A	449	Atxn1	ENSMUST00000180110.8:c.1345A>G	ENSMUSP00000137439.1:p.Thr449Ala	H-2-Kb	9	8	4	QAIAYAGGL	QAITYAGGL	NetMHC	111.71	91.11	0.816	73	0.26	351.456	313.96	0.893	91.11	111.71	194.3	217.5	433.6206938	485.4114317	534.872168	637.1621954	M8_p20	1.4	1.4	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.3	73	0	0	NA	13qA5	chr13-3556297-119495179	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr13	54221267	54221267	TC	T	ENSMUST00000038101.3	1	ENSMUSG00000034987	FS	S/X	374	Hrh2	ENSMUST00000038101.3:c.1122del	ENSMUSP00000038170.3:p.Phe375SerfsTer53	H-2-Kb	9	26	0	SNHHYISVL	NA	NetMHCpan	68.7	NA	NA	51	0.353	178.271	NA	NA	NA	141.14	NA	68.7	NA	229.67303	NA	215.4021332	M8_p20	0.571428571	0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.351	51	0	0	NA	13qB1	chr13-3556297-119495179	4	2	2	0.9	4.068082914	NA	2	1	sgMsh2	cell line
chr14	57480701	57480701	T	C	ENSMUST00000122063.7	1	ENSMUSG00000040040	missense	M/T	577	Ift88	ENSMUST00000122063.7:c.1730T>C	ENSMUSP00000113768.1:p.Met577Thr	H-2-Kb	9	5	7	QAIEWLTQL	QAIEWLMQL	NetMHC	144.21	130.29	0.903	270	0.344	232.952	219.487	0.942	130.29	144.21	188.3	221.5	250.6744092	244.4049514	289.2344371	260.7654204	M8_p20	0.5	0.5	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.337	270	0	0	NA	14qC3	chr14-53336808-75777336	3	2	1	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr12	118008803	118008803	A	G	ENSMUST00000084806.6	1	ENSMUSG00000018581	missense	F/S	2882	Dnah11	ENSMUST00000084806.6:c.8645T>C	ENSMUSP00000081867.6:p.Phe2882Ser	H-2-Kb	9	10	2	VSLLTDAHV	VFLLTDAHV	NetMHC	151.93	528.66	3.48	502	0.177	432.793	838.709	1.938	528.66	151.93	3378.6	1196.3	713.0336075	385.5760057	964.3840079	480.0096849	M8_p20	0.885714286	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.181	502	0	0	NA	12qF2	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.818136675	sgMsh2	cell line
chr13	75878849	75878849	T	G	ENSMUST00000022078.11	1	ENSMUSG00000021589	missense	K/N	468	Rhobtb3	ENSMUST00000022078.11:c.1404A>C	ENSMUSP00000022078.5:p.Lys468Asn	H-2-Kb	9	10	2	SNETFLSFL	SKETFLSFL	NetMHC	152.36	2784.6	18.276	235	0.328	305.223	2383.314	7.808	2784.6	152.36	3434.7	227.4	1982.028979	421.8033261	1691.414308	383.0451784	M8_p20	1.171428571	1.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.336	235	0	0	NA	13qC1	chr13-3556297-119495179	4	2	2	0.9	4.068082914	NA	2	1	sgMsh2	cell line
chr14	30565598	30565598	A	C	ENSMUST00000022529.7	1	ENSMUSG00000021957	missense	D/A	183	Tkt	ENSMUST00000022529.7:c.548A>C	ENSMUSP00000022529.6:p.Asp183Ala	H-2-Kb	9	7	5	VAIFAINRL	VAIFDINRL	NetMHCpan	105.3	537.5	5.104	50	0.32	203.936	485.56	2.381	877.91	173.39	537.5	105.3	433.6206938	234.4822647	361.6179668	276.8534884	M8_p20	1.342857143	2.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.363	50	0	0	NA	14qB	chr14-19751082-41183403	3	2	1	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr14	56761852	56761852	A	C	ENSMUST00000022507.12	1	ENSMUSG00000021938	missense	L/V	316	Pspc1	ENSMUST00000022507.12:c.946T>G	ENSMUSP00000022507.5:p.Leu316Val	H-2-Kb	9	11	1	VMLMRQDLM	LMLMRQDLM	SMM	117.249	337.373	2.877	144	0.375	170.678	505.031	2.959	672.69	215.68	1505.6	463.1	337.3727491	117.2492302	325.2744865	125.6753201	M8_p20	-0.014285714	0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.367	144	0	0	NA	14qC3	chr14-53336808-75777336	3	2	1	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr12	116233327	116233327	AT	A	ENSMUST00000039349.7	1	ENSMUSG00000042050	FS	N/X	470	Wdr60	ENSMUST00000039349.7:c.1409del	ENSMUSP00000047334.6:p.Asn470IlefsTer23	H-2-Kb	9	22	0	IMLRETFRL	NA	NetMHCpan	190.2	NA	NA	242	0.165	277.611	NA	NA	NA	273.96	NA	190.2	NA	281.2613131	NA	346.1385739	M8_p20	-0.4	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1653	242	0	0	NA	12qF2	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.747171229	sgMsh2	cell line
chr12	116318844	116318844	A	C	ENSMUST00000100986.3	1	ENSMUSG00000021171	missense	E/A	138	Esyt2	ENSMUST00000100986.3:c.413A>C	ENSMUSP00000098548.2:p.Glu138Ala	H-2-Kb	9	5	7	FICQFIAKL	FICQFIEKL	NetMHC	274.03	1858.1	6.781	328	0.128	434.65	1868.7	4.299	1858.1	274.03	1879.3	413	1888.469608	820.5593529	1023.882217	456.2995075	M8_p20	1.142857143	2.2	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.13	328	0	0	NA	12qF2	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.587611976	sgMsh2	cell line
chr13	34044462	34044462	T	C	ENSMUST00000040656.7	1	ENSMUSG00000038286	missense	V/A	49	Bphl	ENSMUST00000040656.7:c.146T>C	ENSMUSP00000046168.6:p.Val49Ala	H-2-Kb	9	10	2	GAHLHYQRV	GVHLHYQRV	SMM	232.333	261.282	1.125	220	0.195	256.359	280.252	1.093	286.82	275.99	1129.2	798.7	261.2823058	232.3325184	273.6843727	236.7282022	M8_p20	-1.1	-0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.208	220	0	0	NA	13qA3.3	chr13-3556297-119495179	4	2	2	0.9	4.068082914	NA	1	0.940179162	sgMsh2	cell line
chr14	34594872	34594872	T	C	ENSMUST00000022331.2	1	ENSMUSG00000021799	missense	Y/C	320	Opn4	ENSMUST00000022331.2:c.959A>G	ENSMUSP00000022331.2:p.Tyr320Cys	H-2-Kb	9	6	6	VAFAGCSHI	VAFAGYSHI	NetMHCpan	125.5	15.8	0.126	106	0.434	316.575	52.299	0.165	26.39	294.11	15.8	125.5	87.5205423	410.3080144	78.20778752	339.0392667	M8_p20	1.028571429	1.7	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.439	106	0	0	NA	14qB	chr14-19751082-41183403	3	2	1	0.9	4.068082914	NA	2	1	sgMsh2	cell line
chr14	29170631	29170631	A	T	ENSMUST00000022567.8	1	ENSMUSG00000021991	missense	F/Y	418	Cacna2d3	ENSMUST00000022567.8:c.1253T>A	ENSMUSP00000022567.7:p.Phe418Tyr	H-2-Kb	9	6	6	ANKGFYTQI	ANKGFFTQI	NetMHCpan	153.5	133	0.866	142	0.289	222.545	313.745	1.41	417.88	298.99	133	153.5	384.6892055	273.5961615	242.8007366	171.4944225	M8_p20	-0.357142857	-0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.292	142	0	0	NA	14qA3	chr14-19751082-41183403	3	2	1	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr14	50453867	50453867	G	T	ENSMUST00000214792.1	5	ENSMUSG00000095917	missense	A/S	272	Olfr740	ENSMUST00000214792.1:c.814G>T	ENSMUSP00000148916.1:p.Ala272Ser	H-2-Kb	9	11	1	SGMQKLVTL	AGMQKLVTL	NetMHCpan	247.6	429.1	1.733	205	0.415	423.556	718.749	1.697	707.62	313.47	429.1	247.6	968.523137	625.3310593	729.8775406	533.6419961	M8_p20	0.8	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.406	205	0	0	NA	14qC1	chr14-43673573-52852156	3	2	1	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr13	75878849	75878849	T	G	ENSMUST00000022078.11	1	ENSMUSG00000021589	missense	K/N	468	Rhobtb3	ENSMUST00000022078.11:c.1404A>C	ENSMUSP00000022078.5:p.Lys468Asn	H-2-Kb	9	9	3	VSNETFLSF	VSKETFLSF	SMM	343.645	425.706	1.239	235	0.328	405.045	443.114	1.094	688.38	363.15	407.4	540.2	425.7062242	343.6449768	460.5215948	446.9407979	M8_p20	0.128571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.336	235	0	0	NA	13qC1	chr13-3556297-119495179	4	2	2	0.9	4.068082914	NA	2	1	sgMsh2	cell line
chr13	21674653	21674653	C	T	ENSMUST00000216083.1	5	ENSMUSG00000108534	missense	C/Y	97	Olfr1360	ENSMUST00000216083.1:c.290G>A	ENSMUSP00000149423.1:p.Cys97Tyr	H-2-Kb	9	7	5	SYGGYVAQL	SYGGCVAQL	SMMPMBEC	358.303	1154.117	3.221	186	0.215	444.053	1769.897	3.986	1793.53	366.78	3760.5	626.7	1746.264398	521.3267383	1154.11743	358.3026333	M8_p20	0.6	0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.244	186	0	0	NA	13qA3.1	chr13-3556297-119495179	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr14	53649839	53649839	GT	G	ENSMUST00000103660.3	NA	ENSMUSG00000076848	FS	V/X	72	Trav15-2-dv6-2	ENSMUST00000103660.3:c.218del	ENSMUSP00000100437.2:p.Phe73SerfsTer20	H-2-Kb	9	10	3	MVSLFTNLL	NA	NetMHCpan	380.3	NA	NA	211	0.36	396.63	NA	NA	NA	390.44	NA	380.3	NA	402.8190492	NA	622.6586131	M8_p20	1.314285714	1.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.369	211	0	0	NA	14qC2	chr14-53336808-75777336	3	2	1	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr14	53649839	53649839	GT	G	ENSMUST00000103660.3	NA	ENSMUSG00000076848	FS	V/X	72	Trav15-2-dv6-2	ENSMUST00000103660.3:c.218del	ENSMUSP00000100437.2:p.Phe73SerfsTer20	H-2-Kb	9	9	4	EMVSLFTNL	NA	NetMHCpan	218	NA	NA	211	0.36	413.67	NA	NA	NA	403.59	NA	218	NA	423.7502818	NA	493.4577793	M8_p20	1.371428571	1.371428571	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.369	211	0	0	NA	14qC2	chr14-53336808-75777336	3	2	1	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr13	115001595	115001595	T	C	ENSMUST00000061673.8	1	ENSMUSG00000042284	missense	N/S	418	Itga1	ENSMUST00000061673.8:c.1253A>G	ENSMUSP00000077132.6:p.Asn418Ser	H-2-Kb	9	6	6	IVIPHSTTF	IVIPHNTTF	NetMHCpan	252.2	455.9	1.808	307	0.238	385.48	630.018	1.634	1053.44	404.43	455.9	252.2	676.2542383	366.5303993	583.781059	444.8872915	M8_p20	0.042857143	0.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.238	307	0	0	NA	13qD2.2	chr13-3556297-119495179	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr14	52036009	52036009	A	G	ENSMUST00000214071.1	5	ENSMUSG00000044286	missense	M/T	34	Olfr221	ENSMUST00000214071.1:c.101T>C	ENSMUSP00000150675.1:p.Met34Thr	H-2-Kb	9	6	6	VVFLVTYAI	VVFLVMYAI	NetMHC	404.46	257.9	0.638	143	0.266	474.826	410.59	0.865	257.9	404.46	656.7	462	397.2921646	487.6519891	423.8869047	600.1364431	M8_p20	2.157142857	2.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.267	143	0	0	NA	14qC2	chr14-43673573-52852156	3	2	1	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr14	53649839	53649839	GT	G	ENSMUST00000103660.3	NA	ENSMUSG00000076848	FS	V/X	72	Trav15-2-dv6-2	ENSMUST00000103660.3:c.218del	ENSMUSP00000100437.2:p.Phe73SerfsTer20	H-2-Kb	9	11	2	VSLFTNLLL	NA	SMM	293.839	NA	NA	211	0.36	363.221	NA	NA	NA	414.22	NA	381.1	NA	293.8393807	NA	345.3424772	M8_p20	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.369	211	0	0	NA	14qC2	chr14-53336808-75777336	3	2	1	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr13	114977646	114977646	T	C	ENSMUST00000061673.8	1	ENSMUSG00000042284	missense	T/A	908	Itga1	ENSMUST00000061673.8:c.2722A>G	ENSMUSP00000077132.6:p.Thr908Ala	H-2-Kb	10	5	7	IIFQFNASHL	IIFQFNTSHL	NetMHCpan	18.2	20.2	1.11	332	0.22	482.153	562.852	1.167	29.58	22.72	20.2	18.2	1175.790644	1000.760142	1096.12479	941.5860161	M8_p20	-0.371428571	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.229	332	0	0	NA	13qD2.2	chr13-3556297-119495179	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr16	16673096	16673096	T	C	ENSMUST00000206365.2	3	ENSMUSG00000048101	missense	K/R	295	Olfr19	ENSMUST00000206365.2:c.884A>G	ENSMUSP00000145655.2:p.Lys295Arg	H-2-Db	9	6	6	YSLRNRDLM	YSLRNKDLM	NetMHC	3.3	4.46	1.352	154	0.13	5.853	8.806	1.505	4.46	3.3	5.9	4.6	11.71170164	7.105914866	14.27479894	9.496640546	M8_p20	-0.928571429	-0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.14	154	0	0	NA	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	0.632812898	sgMsh2	cell line
chr15	27755139	27755139	T	C	ENSMUST00000090247.6	5	ENSMUSG00000022263	missense	K/R	2112	Trio	ENSMUST00000090247.6:c.6335A>G	ENSMUSP00000087714.5:p.Lys2112Arg	H-2-Db	9	6	6	YQLLLRDFL	YQLLLKDFL	NetMHC	54.8	115.77	2.113	101	0.158	145.703	262.439	1.801	115.77	54.8	283.9	142.6	245.2562028	148.8058483	279.6211387	186.0244375	M8_p20	1.428571429	1.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.161	101	0	0	NA	15qB1	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	1	0.727734832	sgMsh2	cell line
chr15	75597834	75597834	A	G	ENSMUST00000023243.10	1	ENSMUSG00000022579	missense	T/A	133	Gpihbp1	ENSMUST00000023243.10:c.397A>G	ENSMUSP00000023243.4:p.Thr133Ala	H-2-Db	9	10	2	SALCNIPPW	STLCNIPPW	SMMPMBEC	43.709	249.787	5.715	105	0.248	85.973	425.163	4.945	1274.99	88.65	308.8	114.3	541.5268566	83.29520473	249.7870966	43.70891238	M8_p20	0.457142857	0.957142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.225	105	0	0	NA	15qD3	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr14	79768259	79768259	C	A	ENSMUST00000039568.10	1	ENSMUSG00000036422	missense	K/N	896	Pcdh8	ENSMUST00000039568.10:c.2688G>T	ENSMUSP00000045333.5:p.Lys896Asn	H-2-Db	9	7	5	VAVWNGHSF	VAVWKGHSF	NetMHC	122.71	14681.78	119.646	110	0.364	260.137	10653.193	40.952	14681.78	122.71	12111	287.6	8009.76916	246.388254	9195.38675	273.8861051	M8_p20	-0.257142857	0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.338	110	0	0	NA	14qD3	chr14-75845946-123291781	3	2	1	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr16	3592590	3592590	A	G	ENSMUST00000216259.1	5	ENSMUSG00000051003	missense	S/G	65	Olfr161	ENSMUST00000216259.1:c.193A>G	ENSMUSP00000150825.1:p.Ser65Gly	H-2-Db	9	8	4	FFLGNLSFV	FFLSNLSFV	SMM	191.699	80.282	0.419	199	0.236	456.264	114.023	0.25	99.94	647.94	502	1445.2	80.28233585	191.6990674	128.1061561	264.5879126	M8_p20	1.414285714	1.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.237	199	0	0	NA	16qA1	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	sgMsh2	cell line
chr16	3592590	3592590	A	G	ENSMUST00000216259.1	5	ENSMUSG00000051003	missense	S/G	65	Olfr161	ENSMUST00000216259.1:c.193A>G	ENSMUSP00000150825.1:p.Ser65Gly	H-2-Kb	8	6	6	MYFFLGNL	MYFFLSNL	NetMHCpan	34	14.7	0.432	199	0.236	89.071	59.088	0.663	49.51	88.66	14.7	34	68.66572344	89.4828896	80.11982647	98.3422182	M8_p20	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.237	199	0	0	NA	16qA1	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	sgMsh2	cell line
chr14	123515710	123515710	C	A	ENSMUST00000000201.6	5	ENSMUSG00000000197	missense	R/I	288	Nalcn	ENSMUST00000000201.6:c.863G>T	ENSMUSP00000000201.5:p.Arg288Ile	H-2-Kb	8	6	6	VFLMYIAI	VFLMYRAI	SMM	80.675	70.265	0.871	172	0.314	117.27	70.672	0.603	62.95	152.93	94.9	239.3	70.26515361	80.67519058	71.07878574	81.60936526	M8_p20	2.571428571	2.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.312	172	0	0	NA	14qE5	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	sgMsh2	cell line
chr15	3325898	3325898	C	A	ENSMUST00000069451.10	1	ENSMUSG00000055737	missense	R/M	301	Ghr	ENSMUST00000069451.10:c.902G>T	ENSMUSP00000069457.4:p.Arg301Met	H-2-Kb	8	4	8	VIFSKQQM	VIFSKQQR	NetMHCpan	188.2	12750.8	67.751	272	0.165	363.498	6741.575	18.546	9458.39	228.41	12750.8	188.2	2790.872523	500.8872766	4024.76011	498.5859086	M8_p20	-0.357142857	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.175	272	0	0	NA	15qA1	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	1	0.791016122	sgMsh2	cell line
chr15	100190056	100190056	T	C	ENSMUST00000100203.9	1	ENSMUSG00000023026	missense	V/A	957	Dip2b	ENSMUST00000100203.9:c.2870T>C	ENSMUSP00000097777.3:p.Val957Ala	H-2-Kb	8	7	5	ASVMAGNL	ASVMVGNL	NetMHC	249.4	155.85	0.625	206	0.194	304.177	234.725	0.772	155.85	249.4	254.3	361	261.0597994	332.4604589	215.149331	275.892567	M8_p20	1	1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.189	206	0	0	NA	15qF1	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	1	0.854297412	sgMsh2	cell line
chr15	76185668	76185668	G	A	ENSMUST00000073418.12	5	ENSMUSG00000022565	missense	R/W	1153	Plec	ENSMUST00000073418.12:c.3457C>T	ENSMUSP00000073124.6:p.Arg1153Trp	H-2-Kb	8	7	5	VHRLWLPL	VHRLRLPL	SMM	145.794	747.722	5.129	34	0.176	184.366	805.542	4.369	756.53	292.75	951.2	214.3	747.7217263	145.794117	854.5549615	154.4329616	M8_p20	0.171428571	0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe	3	0.2	34	0	0	NA	15qD3	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	1	0.904018425	sgMsh2	cell line
chr15	55084094	55084094	A	G	ENSMUST00000023059.12	1	ENSMUSG00000022422	missense	V/A	230	Dscc1	ENSMUST00000023059.12:c.689T>C	ENSMUSP00000023059.6:p.Val230Ala	H-2-Kb	8	6	6	WSLDRAPL	WSLDRVPL	SMMPMBEC	220.668	636.414	2.884	94	0.351	309.984	790.887	2.551	1192.99	347.86	795.2	403.9	786.5747483	272.1071791	636.4144033	220.6683258	M8_p20	-0.142857143	-0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.349	94	0	0	NA	15qD1	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	2	1	sgMsh2	cell line
chr16	3592523	3592523	GA	G	ENSMUST00000216259.1	5	ENSMUSG00000051003	FS	G/X	42	Olfr161	ENSMUST00000216259.1:c.128del	ENSMUSP00000150825.1:p.Asn43ThrfsTer46	H-2-Kb	8	47	0	LSLRYWPF	NA	NetMHCpan	130.4	NA	NA	154	0.208	210.41	NA	NA	NA	465.62	NA	130.4	NA	248.7367755	NA	172.0838049	M8_p20	-0.357142857	-0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.219	154	0	0	NA	16qA1	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	sgMsh2	cell line
chr15	16823315	16823315	CA	C	ENSMUST00000228307.1	NA	ENSMUSG00000025370	FS	K/X	128	Cdh9	ENSMUST00000228307.1:c.383del	ENSMUSP00000154022.1:p.Lys128ArgfsTer3	H-2-Kb	9	4	8	SLYILRARL	SLYILRAKA	NetMHC	34.72	2987.65	86.05	181	0.188	138.433	2844.375	20.547	2987.65	34.72	2701.1	48.7	4386.417848	267.9847002	2662.257137	228.165512	M8_p20	0.514285714	1.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.18	181	0	0	NA	15qA2	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	1	0.813616583	sgMsh2	cell line
chr16	3592590	3592590	A	G	ENSMUST00000216259.1	5	ENSMUSG00000051003	missense	S/G	65	Olfr161	ENSMUST00000216259.1:c.193A>G	ENSMUSP00000150825.1:p.Ser65Gly	H-2-Kb	9	5	7	PMYFFLGNL	PMYFFLSNL	SMM	22.862	15.35	0.671	199	0.236	43.133	26.875	0.623	34.5	54.11	28.5	71.6	15.35005727	22.86177783	25.24933823	32.15511003	M8_p20	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.237	199	0	0	NA	16qA1	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	sgMsh2	cell line
chr15	98126427	98126427	G	T	ENSMUST00000051226.7	1	ENSMUSG00000033065	missense	G/C	439	Pfkm	ENSMUST00000051226.7:c.1315G>T	ENSMUSP00000059801.6:p.Gly439Cys	H-2-Kb	9	7	5	VVHDCFEGL	VVHDGFEGL	NetMHC	110.43	431.59	3.908	183	0.18	228.926	428.227	1.871	431.59	110.43	423.6	235.2	439.6529586	227.0439846	424.864065	230.8075441	M8_p20	-0.214285714	0.5	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.183	183	0	0	NA	15qF1	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	1	0.827176859	sgMsh2	cell line
chr15	3325898	3325898	C	A	ENSMUST00000069451.10	1	ENSMUSG00000055737	missense	R/M	301	Ghr	ENSMUST00000069451.10:c.902G>T	ENSMUSP00000069457.4:p.Arg301Met	H-2-Kb	9	4	8	VIFSKQQMI	VIFSKQQRI	NetMHC	128.02	112.77	0.881	272	0.165	167.824	129.667	0.773	112.77	128.02	141	229.5	118.334124	147.6080354	149.021867	188.039895	M8_p20	-0.357142857	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.175	272	0	0	NA	15qA1	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	1	0.791016122	sgMsh2	cell line
chr14	123515710	123515710	C	A	ENSMUST00000000201.6	5	ENSMUSG00000000197	missense	R/I	288	Nalcn	ENSMUST00000000201.6:c.863G>T	ENSMUSP00000000201.5:p.Arg288Ile	H-2-Kb	9	5	7	WVFLMYIAI	WVFLMYRAI	SMM	126.506	178.694	1.413	172	0.314	190.437	187.572	0.985	117.77	251.38	308	1796.8	178.6940122	126.5056726	196.4490803	129.4941055	M8_p20	2.571428571	2.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.312	172	0	0	NA	14qE5	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	sgMsh2	cell line
chr15	63824978	63824978	T	C	ENSMUST00000188691.1	1	ENSMUSG00000056293	missense	K/R	448	Gsdmc2	ENSMUST00000188691.1:c.1343A>G	ENSMUSP00000140487.1:p.Lys448Arg	H-2-Kb	9	4	8	STWDLEARM	STWDLEAKM	NetMHC	270.97	630.27	2.326	366	0.339	393.946	686.739	1.743	630.27	270.97	949.5	462.3	743.2073569	407.4834739	574.4470454	380.4083139	M8_p20	-0.7	-0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.345	366	0	0	NA	15qD1	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	2	1	sgMsh2	cell line
chr15	76622252	76622252	GT	G	ENSMUST00000078803.4	1	ENSMUSG00000115987	FS	N/X	216	Vps28	ENSMUST00000078803.4:c.647del	ENSMUSP00000077856.3:p.Asn216ThrfsTer?	H-2-Kb	9	5	7	SAYNAFTAS	SAYNAFNRF	SMM	204.226	61.96	0.303	261	0.199	329.815	52.55	0.159	43.14	281.84	34.5	452.4	61.95979897	204.225515	87.54876014	377.7896015	M8_p20	0.014285714	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.203	261	0	0	NA	15qD3	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	1	0.917578702	sgMsh2	cell line
chr15	76185668	76185668	G	A	ENSMUST00000073418.12	5	ENSMUSG00000022565	missense	R/W	1153	Plec	ENSMUST00000073418.12:c.3457C>T	ENSMUSP00000073124.6:p.Arg1153Trp	H-2-Kb	9	6	6	TVHRLWLPL	TVHRLRLPL	NetMHCpan	140.4	473.4	3.372	34	0.176	302.662	666.334	2.202	585.79	318.08	473.4	140.4	790.8789199	332.7438214	746.8785726	287.2433612	M8_p20	0.171428571	0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe	3	0.2	34	0	0	NA	15qD3	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	1	0.904018425	sgMsh2	cell line
chr16	3592523	3592523	GA	G	ENSMUST00000216259.1	5	ENSMUSG00000051003	FS	G/X	42	Olfr161	ENSMUST00000216259.1:c.128del	ENSMUSP00000150825.1:p.Asn43ThrfsTer46	H-2-Kb	9	39	0	WMYASPPPL	NA	NetMHCpan	187.9	NA	NA	154	0.208	209.738	NA	NA	NA	330.1	NA	187.9	NA	192.357888	NA	227.1171867	M8_p20	-0.185714286	-0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.219	154	0	0	NA	16qA1	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	sgMsh2	cell line
chr17	18185134	18185134	GA	G	ENSMUST00000169686.2	5	ENSMUSG00000091350	FS	K/X	847	Vmn2r92	ENSMUST00000169686.2:c.2548del	ENSMUSP00000128685.1:p.Thr850HisfsTer34	H-2-Db	9	24	0	YSFRNEFCF	NA	NetMHC	63.68	NA	NA	135	0.304	173.294	NA	NA	NA	63.68	NA	82	NA	308.7592661	NA	264.5879126	M8_p20	-0.085714286	-0.085714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.278	135	0	0	NA	17qA3.2	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr17	24717463	24717463	C	A	ENSMUST00000008626.9	1	ENSMUSG00000008482	missense	R/I	50	Rnf151	ENSMUST00000008626.9:c.149G>T	ENSMUSP00000008626.8:p.Arg50Ile	H-2-Db	9	9	3	LAIQNTCPC	LARQNTCPC	SMMPMBEC	115.231	1529.572	13.274	176	0.227	213.984	4350.8	20.332	14789.72	234.05	6332.3	411.5	2369.299703	193.9188379	1529.572264	115.2311776	M8_p20	0.028571429	0.7	FALSE	TRUE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.236	176	0	0	NA	17qA3.3	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr16	59543197	59543197	AT	A	ENSMUST00000172910.2	5	ENSMUSG00000022723	FS	K/X	2441	Crybg3	ENSMUST00000172910.2:c.7323del	ENSMUSP00000156047.1:p.Lys2441AsnfsTer11	H-2-Db	9	7	5	AAEMNHCIL	NA	NetMHCpan	226	NA	NA	48	0.271	388.867	NA	NA	NA	644.6	NA	226	NA	423.2724481	NA	354.4622582	M8_p20	0.357142857	0.357142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.249	48	0	0	NA	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr17	37701005	37701005	AT	A	ENSMUST00000213732.1	5	ENSMUSG00000059964	FS	F/X	112	Olfr119	ENSMUST00000213732.1:c.339del	ENSMUSP00000150099.1:p.Phe113LeufsTer3	H-2-Kb	8	5	8	QMFFFTFL	QMFFFTFF	NetMHCpan	9.9	98.7	9.97	482	0.237	18.421	250.269	13.586	184.5	17.4	98.7	9.9	316.0385059	19.44195797	349.7357273	27.84453695	M8_p20	2.314285714	2.314285714	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.237	482	0	0	NA	17qB1	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr17	37382656	37382656	T	C	ENSMUST00000215518.1	5	ENSMUSG00000094884	missense	Y/H	30	Olfr105-ps	ENSMUST00000215518.1:c.88T>C	ENSMUSP00000154753.1:p.Tyr30His	H-2-Kb	8	8	4	LAMHFINV	LAMYFINV	NetMHCpan	38.2	31.6	0.827	583	0.28	115.449	106.2	0.92	39.92	67.69	31.6	38.2	226.3288934	224.7708563	172.480499	163.2074578	M8_p20	1.214285714	1.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.272	583	0	0	NA	17qB1	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr16	90767027	90767027	CA	C	ENSMUST00000140920.1	5	ENSMUSG00000039929	FS	L/X	1616	Urb1	ENSMUST00000140920.1:c.4847del	ENSMUSP00000114717.1:p.Leu1616ArgfsTer37	H-2-Kb	8	35	0	MTPAFFSI	NA	NetMHCpan	58.1	NA	NA	73	0.26	155.093	NA	NA	NA	108.47	NA	58.1	NA	201.7158386	NA	223.738128	M8_p20	1.257142857	1.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.233	73	0	0	NA	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr16	58926453	58926453	T	C	ENSMUST00000205986.3	2	ENSMUSG00000090951	missense	I/M	39	Olfr181	ENSMUST00000205986.3:c.117A>G	ENSMUSP00000145877.2:p.Ile39Met	H-2-Kb	8	5	7	AIYLVTMV	AIYLVTIV	NetMHC	143.87	786.44	5.466	334	0.234	259.507	804.095	3.099	786.44	143.87	1131.3	680.2	620.4974485	238.6382195	821.7505435	280.3754606	M8_p20	2.371428571	2.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.244	334	0	0	NA	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr17	24717463	24717463	C	A	ENSMUST00000008626.9	1	ENSMUSG00000008482	missense	R/I	50	Rnf151	ENSMUST00000008626.9:c.149G>T	ENSMUSP00000008626.8:p.Arg50Ile	H-2-Kb	8	4	8	CIFRWLAI	CIFRWLAR	NetMHCpan	193.5	5967.9	30.842	176	0.227	291.699	2961.469	10.152	4268.16	476.86	5967.9	193.5	974.4061133	282.9697428	1654.778997	300.4277187	M8_p20	1.714285714	1.714285714	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.236	176	0	0	NA	17qA3.3	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr16	58915901	58915901	GA	G	ENSMUST00000171656.2	2	ENSMUSG00000090629	FS	S/X	247	Olfr180	ENSMUST00000171656.2:c.739del	ENSMUSP00000128358.1:p.Ser247LeufsTer31	H-2-Kb	8	31	0	KTYQWLYF	NA	NetMHCpan	200.7	NA	NA	190	0.237	382.912	NA	NA	NA	489.31	NA	200.7	NA	445.3895263	NA	320.4350395	M8_p20	-0.157142857	-0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.245	190	0	0	NA	16qC1.2	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr16	58915901	58915901	GA	G	ENSMUST00000171656.2	2	ENSMUSG00000090629	FS	S/X	247	Olfr180	ENSMUST00000171656.2:c.739del	ENSMUSP00000128358.1:p.Ser247LeufsTer31	H-2-Kb	8	29	0	VIKTYQWL	NA	SMM	154.433	NA	NA	190	0.237	282.366	NA	NA	NA	556.53	NA	386.6	NA	154.4329616	NA	178.1312026	M8_p20	-0.285714286	-0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.245	190	0	0	NA	16qC1.2	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr16	32625064	32625064	A	G	ENSMUST00000023486.14	1	ENSMUSG00000022797	missense	E/G	562	Tfrc	ENSMUST00000023486.14:c.1685A>G	ENSMUSP00000023486.8:p.Glu562Gly	H-2-Kb	8	5	7	VSFCFCGD	VSFCFCED	SMM	38.525	86.048	2.234	77	0.156	312.812	723.513	2.313	1358.77	587.1	1915.6	1169.1	86.04784535	38.52476516	88.25513833	38.52476516	M8_p20	0.842857143	1.942857143	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.196	77	0	0	NA	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	0.885938057	sgMsh2	cell line
chr16	32961669	32961669	A	G	ENSMUST00000135193.8	5	ENSMUSG00000022801	missense	Y/C	271	Lrch3	ENSMUST00000135193.8:c.812A>G	ENSMUSP00000130708.1:p.Tyr271Cys	H-2-Kb	8	5	7	KIHIFKCL	KIHIFKYL	SMMPMBEC	256.886	92.628	0.361	238	0.231	319.381	76.184	0.239	59.74	598.73	59.4	324.9	102.9769442	313.8629122	92.62751223	256.8857419	M8_p20	1.571428571	1.571428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.237	238	0	0	NA	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr17	30761096	30761096	GT	G	ENSMUST00000236140.1	NA	ENSMUSG00000033826	FS	F/X	3035	Dnah8	ENSMUST00000236140.1:c.9108del	ENSMUSP00000157469.1:p.Phe3036LeufsTer5	H-2-Kb	8	5	8	TSLDLVFL	TSLDLVFF	SMM	245.89	3997.054	16.255	140	0.2	452.067	3837.777	8.489	5159.69	706.65	3678.5	633.9	3997.053856	245.8895091	3394.220093	270.2340064	M8_p20	2.014285714	2.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.197	140	0	0	NA	17qA3.3	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	0.890458149	sgMsh2	cell line
chr17	37701005	37701005	AT	A	ENSMUST00000213732.1	5	ENSMUSG00000059964	FS	F/X	112	Olfr119	ENSMUST00000213732.1:c.339del	ENSMUSP00000150099.1:p.Phe113LeufsTer3	H-2-Kb	9	4	9	TQMFFFTFL	TQMFFFTFF	NetMHCpan	14.3	117.3	8.203	482	0.237	93.963	252.605	2.688	250.38	40.61	117.3	14.3	271.7127388	161.1053638	254.8296748	147.3160278	M8_p20	2.314285714	2.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.237	482	0	0	NA	17qB1	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr17	20994614	20994614	T	C	ENSMUST00000237195.1	NA	ENSMUSG00000045575	missense	I/V	25	Vmn1r233	ENSMUST00000237195.1:c.73A>G	ENSMUSP00000158452.1:p.Ile25Val	H-2-Kb	9	3	9	VIILFQTMV	VIILFQTMI	NetMHC	46.04	63.11	1.371	248	0.202	142.11	130.172	0.916	63.11	46.04	89.3	129.3	171.044849	154.920896	194.6480243	188.4733717	M8_p20	1.857142857	2.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.22	248	0	0	NA	17qA3.2	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	0.994420268	sgMsh2	cell line
chr17	13225949	13225949	T	C	ENSMUST00000080647.4	1	ENSMUSG00000073458	missense	C/R	138	Smok2a	ENSMUST00000080647.4:c.412T>C	ENSMUSP00000094432.2:p.Cys138Arg	H-2-Kb	9	8	4	INYRHNQGI	INYCHNQGI	NetMHCpan	30	54.9	1.83	986	0.121	105.887	125.761	1.188	188.04	80.78	54.9	30	133.6934098	144.9138851	117.8284053	130.9935766	M8_p20	-1.7	-1.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.118	986	0	0	NA	17qA1	chr17-3079405-14988397	4	2	2	0.9	4.068082914	NA	1	0.533370871	sgMsh2	cell line
chr17	37563942	37563942	T	C	ENSMUST00000213274.1	5	ENSMUSG00000051611	missense	Y/C	123	Olfr112	ENSMUST00000213274.1:c.368A>G	ENSMUSP00000150904.1:p.Tyr123Cys	H-2-Kb	9	6	6	MSYDRCVAI	MSYDRYVAI	NetMHCpan	74.8	9.3	0.124	531	0.241	107.253	21.056	0.196	15.55	99.36	9.3	74.8	32.36756285	151.7434661	26.56134116	115.1463034	M8_p20	0.528571429	0.528571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.234	531	0	0	NA	17qB1	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr16	20686853	20686853	A	G	ENSMUST00000115460.7	5	ENSMUSG00000045983	missense	I/V	1292	Eif4g1	ENSMUST00000115460.7:c.3874A>G	ENSMUSP00000111120.1:p.Ile1292Val	H-2-Kb	9	11	1	VAREHMGRL	IAREHMGRL	SMMPMBEC	106.967	141.661	1.324	128	0.273	116.472	149.63	1.285	127.43	113.79	157.6	170.6	175.4324789	119.1543769	141.6609011	106.9670454	M8_p20	-1.485714286	-0.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.284	128	0	0	NA	16qB1	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr17	32774731	32774731	T	C	ENSMUST00000159086.9	1	ENSMUSG00000024298	missense	K/R	490	Zfp871	ENSMUST00000159086.9:c.1469A>G	ENSMUSP00000127178.1:p.Lys490Arg	H-2-Kb	9	7	5	SQFQRHKAL	SQFQKHKAL	NetMHC	137.22	270.99	1.975	149	0.215	206.635	341.188	1.651	270.99	137.22	269.6	151.3	460.3731641	307.6876041	411.386466	261.9690589	M8_p20	-0.957142857	-0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.214	149	0	0	NA	17qB1	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	0.967299715	sgMsh2	cell line
chr16	32625064	32625064	A	G	ENSMUST00000023486.14	1	ENSMUSG00000022797	missense	E/G	562	Tfrc	ENSMUST00000023486.14:c.1685A>G	ENSMUSP00000023486.8:p.Glu562Gly	H-2-Kb	9	5	7	VSFCFCGDA	VSFCFCEDA	NetMHC	139.07	316.88	2.279	77	0.156	227.503	410.548	1.805	316.88	139.07	392.3	167.1	644.3324442	446.7967444	428.7952838	287.9055255	M8_p20	1.214285714	1.942857143	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.196	77	0	0	NA	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	0.885938057	sgMsh2	cell line
chr17	37701005	37701005	AT	A	ENSMUST00000213732.1	5	ENSMUSG00000059964	FS	F/X	112	Olfr119	ENSMUST00000213732.1:c.339del	ENSMUSP00000150099.1:p.Phe113LeufsTer3	H-2-Kb	9	5	8	QMFFFTFLV	QMFFFTFFG	SMM	56.378	416.016	7.379	482	0.237	130.663	1702.349	13.029	3181.25	152.62	2823.6	205	416.0159675	56.37804345	581.0988286	108.7051201	M8_p20	2.642857143	2.642857143	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.237	482	0	0	NA	17qB1	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr17	20541376	20541376	T	C	ENSMUST00000167093.2	5	ENSMUSG00000090572	missense	K/R	573	Vmn2r109	ENSMUST00000167093.2:c.1718A>G	ENSMUSP00000132641.1:p.Lys573Arg	H-2-Kb	9	5	7	KNRCFQRAL	KNRCFQKAL	NetMHC	165.44	352.48	2.131	129	0.24	462.293	616.338	1.333	352.48	165.44	565.7	327.4	666.9756823	597.1865254	871.4651012	849.6694433	M8_p20	-0.228571429	-0.228571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.231	129	0	0	NA	17qA3.2	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr17	3437282	3437282	C	T	ENSMUST00000072156.6	1	ENSMUSG00000023800	missense	R/C	693	Tiam2	ENSMUST00000072156.6:c.2077C>T	ENSMUSP00000072020.6:p.Arg693Cys	H-2-Kb	9	9	3	RMCCYLASL	RMRCYLASL	NetMHCpan	149.3	62	0.415	76	0.237	207.599	123.112	0.593	79.84	196.8	62	149.3	166.383402	308.3968972	189.7798067	218.3986754	M8_p20	1.757142857	1.757142857	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.265	76	0	0	NA	17qA1	chr17-3079405-14988397	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr17	37382656	37382656	T	C	ENSMUST00000215518.1	5	ENSMUSG00000094884	missense	Y/H	30	Olfr105-ps	ENSMUST00000215518.1:c.88T>C	ENSMUSP00000154753.1:p.Tyr30His	H-2-Kb	9	7	5	VLAMHFINV	VLAMYFINV	NetMHCpan	171.6	152.5	0.889	583	0.28	293.012	230.854	0.788	138.03	197.65	152.5	171.6	338.9299909	422.7756832	309.2074862	388.3738676	M8_p20	1.214285714	2.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.272	583	0	0	NA	17qB1	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr17	19053653	19053653	C	A	ENSMUST00000170424.2	5	ENSMUSG00000096717	missense	S/Y	54	Vmn2r98	ENSMUST00000170424.2:c.161C>A	ENSMUSP00000131261.1:p.Ser54Tyr	H-2-Kb	9	7	5	HTFYYLKKM	HTFYSLKKM	NetMHCpan	162.4	2676.5	16.481	273	0.227	315.655	1812.209	5.741	2171.47	303.78	2676.5	162.4	1432.550696	345.2311699	1452.947761	327.5291816	M8_p20	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.222	273	0	0	NA	17qA3.2	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr16	58915901	58915901	GA	G	ENSMUST00000171656.2	2	ENSMUSG00000090629	FS	S/X	247	Olfr180	ENSMUST00000171656.2:c.739del	ENSMUSP00000128358.1:p.Ser247LeufsTer31	H-2-Kb	9	31	0	KTYQWLYFI	NA	NetMHCpan	171.2	NA	NA	190	0.237	384.332	NA	NA	NA	307.23	NA	171.2	NA	461.4344339	NA	521.4948213	M8_p20	0.585714286	0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.245	190	0	0	NA	16qC1.2	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr16	43898221	43898221	C	A	ENSMUST00000132859.7	5	ENSMUSG00000022701	missense	S/Y	4	Ccdc191	ENSMUST00000132859.7:c.11C>A	ENSMUSP00000116078.1:p.Ser4Tyr	H-2-Kb	9	2	3	MTYMKKELV	MTSMKKELV	NetMHC	416.43	10480.62	25.168	403	0.238	433.746	8552.231	19.717	10480.62	416.43	14641.3	616.9	6623.84254	440.6664633	5600.799166	426.8251484	M8_p20	-0.385714286	-0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.238	403	0	0	NA	16qB4	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr16	21766387	21766387	T	C	ENSMUST00000023559.6	1	ENSMUSG00000022853	missense	K/R	248	Ehhadh	ENSMUST00000023559.6:c.743A>G	ENSMUSP00000023559.5:p.Lys248Arg	H-2-Kb	9	8	4	VAIREEAKL	VAIKEEAKL	SMMPMBEC	390.167	363.287	0.931	158	0.241	440.36	560.026	1.272	711.63	447.1	840.8	676.6	408.4228203	433.6206938	363.2871195	390.1665199	M8_p20	-0.757142857	0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.242	158	0	0	NA	16qB1	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr16	58926453	58926453	T	C	ENSMUST00000205986.3	2	ENSMUSG00000090951	missense	I/M	39	Olfr181	ENSMUST00000205986.3:c.117A>G	ENSMUSP00000145877.2:p.Ile39Met	H-2-Kb	9	3	9	FSAIYLVTM	FSAIYLVTI	SMM	339.711	641.372	1.888	334	0.234	388.31	695.236	1.79	910.5	521.58	749.1	436.8	641.3720055	339.7113053	579.7623384	339.8208329	M8_p20	2.028571429	2.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.244	334	0	0	NA	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr17	56632320	56632320	T	G	ENSMUST00000112979.3	1	ENSMUSG00000040828	missense	F/V	50	Catsperd	ENSMUST00000112979.3:c.148T>G	ENSMUSP00000108603.2:p.Phe50Val	H-2-Db	9	5	7	YAFPNTVVL	YAFPNTFVL	NetMHCpan	9.1	7.6	0.835	208	0.183	33.615	30.922	0.92	12.57	10.27	7.6	9.1	49.27424743	62.03260224	49.83907806	56.96000254	M8_p20	1.314285714	1.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.177	208	0	0	NA	17qD	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	0.800056306	sgMsh2	cell line
chr18	37680939	37680939	G	T	ENSMUST00000192931.1	1	ENSMUSG00000103037	missense	S/I	161	Pcdhgb1	ENSMUST00000192931.1:c.482G>T	ENSMUSP00000141348.1:p.Ser161Ile	H-2-Db	9	3	9	NSLKMYTVI	NSLKMYTVS	NetMHC	158.89	19903.22	125.264	214	0.519	356.594	9153.28	25.669	19903.22	158.89	14990.9	524.3	2996.539453	391.3992598	3315.660076	321.7881152	M8_p20	1.214285714	1.214285714	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.515	214	0	0	NA	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	2	1	sgMsh2	cell line
chr18	37021442	37021442	T	C	ENSMUST00000047614.3	1	ENSMUSG00000103310	missense	Y/H	405	Pcdha12	ENSMUST00000047614.3:c.1213T>C	ENSMUSP00000047609.1:p.Tyr405His	H-2-Db	9	5	7	STFKNYHSL	STFKNYYSL	NetMHCpan	36.5	34.8	0.953	186	0.194	221.131	155.833	0.705	81.22	180.1	34.8	36.5	270.7821299	272.659102	230.4464382	262.162156	M8_p20	-0.871428571	-0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.211	186	0	0	NA	18qB2	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	0.953739439	sgMsh2	cell line
chr17	84697532	84697532	T	C	ENSMUST00000045714.14	1	ENSMUSG00000024254	missense	F/L	576	Abcg8	ENSMUST00000045714.14:c.1726T>C	ENSMUSP00000035246.8:p.Phe576Leu	H-2-Db	9	10	2	GLMINLDNL	GFMINLDNL	NetMHCpan	367.1	1384.4	3.771	109	0.138	482.343	875.659	1.815	1955.18	698.93	1384.4	367.1	313.0545354	536.5621085	366.91883	428.1244195	M8_p20	0.5	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.138	109	0	0	NA	17qE4	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	0.623772713	sgMsh2	cell line
chr17	84697532	84697532	T	C	ENSMUST00000045714.14	1	ENSMUSG00000024254	missense	F/L	576	Abcg8	ENSMUST00000045714.14:c.1726T>C	ENSMUSP00000035246.8:p.Phe576Leu	H-2-Kb	8	4	8	SFYLTAGL	SFYLTAGF	NetMHC	15.37	172.25	11.207	109	0.138	31.057	352.868	11.362	172.25	15.37	298.6	61	482.7696948	29.69887511	407.1364636	32.41455024	M8_p20	1.4	1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.138	109	0	0	NA	17qE4	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	0.623772713	sgMsh2	cell line
chr18	61697778	61697778	T	C	ENSMUST00000025472.6	1	ENSMUSG00000024579	missense	Y/C	341	Pcyox1l	ENSMUST00000025472.6:c.1022A>G	ENSMUSP00000025472.1:p.Tyr341Cys	H-2-Kb	8	5	7	VSLVHGCL	VSLVHGYL	NetMHC	42.26	7.17	0.17	104	0.26	48.333	15.42	0.319	7.17	42.26	15	81.6	15.83944645	48.27696948	17.44777291	48.38825938	M8_p20	1.414285714	1.471428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.257	104	0	0	NA	18qE1	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr17	38082114	38082114	A	G	ENSMUST00000216523.1	5	ENSMUSG00000043312	missense	M/T	288	Olfr131	ENSMUST00000216523.1:c.863T>C	ENSMUSP00000150562.1:p.Met288Thr	H-2-Kb	8	8	4	ITPTLNPL	ITPMLNPL	NetMHC	80.3	53.48	0.666	254	0.268	136.287	121.388	0.891	53.48	80.3	100.3	182.4	146.4670721	126.107234	142.4754378	146.4670721	M8_p20	-0.071428571	0.028571429	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.268	254	0	0	NA	17qB1	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr18	75519813	75519813	T	C	ENSMUST00000165559.2	5	ENSMUSG00000052928	missense	K/E	458	Ctif	ENSMUST00000165559.2:c.1372A>G	ENSMUSP00000129974.1:p.Lys458Glu	H-2-Kb	8	5	7	FAFTAAEL	FAFTAAKL	NetMHC	81.29	76.52	0.941	58	0.362	124.469	90.585	0.728	76.52	81.29	76	111.3	104.6501849	137.6385219	105.6185011	153.0171117	M8_p20	1.114285714	1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.395	58	0	0	NA	18qE3	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr17	88479276	88479276	T	G	ENSMUST00000112238.8	1	ENSMUSG00000034998	missense	S/R	211	Foxn2	ENSMUST00000112238.8:c.633T>G	ENSMUSP00000107857.2:p.Ser211Arg	H-2-Kb	8	7	5	SSPQRAAL	SSPQSAAL	NetMHC	93.15	80.17	0.861	132	0.189	159.164	111.694	0.702	80.17	93.15	564.5	437.8	90.7277206	147.8223152	132.6600022	170.5061311	M8_p20	-0.428571429	-0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.202	132	0	0	NA	17qE4	chr17-87745782-94740433	4	2	2	0.9	4.068082914	NA	1	0.91305861	sgMsh2	cell line
chr17	56777470	56777470	T	C	ENSMUST00000002444.14	1	ENSMUSG00000024206	missense	N/S	668	Rfx2	ENSMUST00000002444.14:c.2003A>G	ENSMUSP00000002444.7:p.Asn668Ser	H-2-Kb	8	6	6	VMGEFSDL	VMGEFNDL	NetMHC	113.49	324.64	2.861	98	0.235	192.202	326.647	1.699	324.64	113.49	576.2	261.7	313.8629122	193.9724271	328.6548155	190.4320313	M8_p20	0.042857143	0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.249	98	0	0	NA	17qD	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr18	56491908	56491908	A	C	ENSMUST00000237355.1	NA	ENSMUSG00000001700	missense	I/L	358	Gramd3	ENSMUST00000237355.1:c.1072A>C	ENSMUSP00000157710.1:p.Ile358Leu	H-2-Kb	8	4	8	AIIVCALL	AIIVCALI	NetMHC	138.87	1449.26	10.436	125	0.304	182.51	1386.404	7.596	1449.26	138.87	2402.7	511.3	1323.548926	204.0515979	924.1447486	160.9681675	M8_p20	3.585714286	3.585714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.301	125	0	0	NA	18qD3	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr17	42592968	42592968	TA	T	ENSMUST00000068355.7	1	ENSMUSG00000043972	FS	Y/X	159	Opn5	ENSMUST00000068355.7:c.475del	ENSMUSP00000063542.6:p.Tyr159MetfsTer43	H-2-Kb	8	5	7	LAVIWAML	LAVIWAYA	NetMHCpan	147.2	3567.3	24.234	55	0.273	206.513	4062.47	19.672	6717.72	182.49	3567.3	147.2	4557.639811	321.1737185	2604.593785	230.5366617	M8_p20	2.442857143	2.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.256	55	0	0	NA	17qB3	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr17	40228805	40228805	A	G	ENSMUST00000026499.5	1	ENSMUSG00000025433	missense	V/A	167	Crisp3	ENSMUST00000026499.5:c.500T>C	ENSMUSP00000026499.5:p.Val167Ala	H-2-Kb	8	10	2	YACRYCPV	YVCRYCPV	SMMPMBEC	174.478	161.339	0.925	471	0.212	239.579	312.449	1.304	429.13	286.52	494.4	303	195.7672319	192.6371303	161.3392375	174.4777291	M8_p20	0.514285714	0.514285714	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.216	471	0	0	NA	17qB2	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	0.976339899	sgMsh2	cell line
chr17	83477824	83477824	T	C	ENSMUST00000096766.11	1	ENSMUSG00000032624	missense	L/P	875	Eml4	ENSMUST00000096766.11:c.2624T>C	ENSMUSP00000094528.4:p.Leu875Pro	H-2-Kb	8	5	7	SIIQWKPV	SIIQWKLV	SMMPMBEC	267.141	735.766	2.754	154	0.214	337.819	1037.14	3.07	1227.56	355.94	1662.3	657.1	846.7203545	319.6980594	735.7664827	267.1406633	M8_p20	0.471428571	0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.22	154	0	0	NA	17qE4	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	0.994420268	sgMsh2	cell line
chr17	38304994	38304994	T	C	ENSMUST00000213505.1	5	ENSMUSG00000054940	missense	T/A	156	Olfr137	ENSMUST00000213505.1:c.466A>G	ENSMUSP00000150173.1:p.Thr156Ala	H-2-Kb	8	7	5	CGFTASAL	CGFTTSAL	SMM	193.972	284.931	1.469	199	0.236	240.585	312.177	1.298	583.32	395.88	277.8	199.5	284.9311953	193.9724271	339.4220093	281.6696149	M8_p20	1.185714286	1.185714286	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	199	0	0	NA	17qB1	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr18	37941753	37941753	A	G	ENSMUST00000043498.8	1	ENSMUSG00000024454	missense	S/P	312	Hdac3	ENSMUST00000043498.8:c.934T>C	ENSMUSP00000037981.7:p.Ser312Pro	H-2-Kb	8	6	6	WTYETPLL	WTYETSLL	SMMPMBEC	359.534	238.638	0.664	313	0.195	430.684	272.762	0.633	289.23	493.46	348.5	494.9	256.2949211	367.908651	238.6382195	359.5340277	M8_p20	-0.028571429	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.199	313	0	0	NA	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	0.899498333	sgMsh2	cell line
chr17	37751964	37751964	A	G	ENSMUST00000174675.3	5	ENSMUSG00000060017	missense	I/V	37	Olfr121	ENSMUST00000174675.3:c.109A>G	ENSMUSP00000133865.3:p.Ile37Val	H-2-Kb	8	4	8	CFLLFTLV	CFLLFTLI	SMM	253.945	461.041	1.816	618	0.186	479.578	724.227	1.51	850.4	581.81	2002	2533.9	461.0414792	253.9451951	598.0534499	377.3462166	M8_p20	2.928571429	2.928571429	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.18	618	0	0	NA	17qB1	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	0.813616583	sgMsh2	cell line
chr18	37021442	37021442	T	C	ENSMUST00000047614.3	1	ENSMUSG00000103310	missense	Y/H	405	Pcdha12	ENSMUST00000047614.3:c.1213T>C	ENSMUSP00000047609.1:p.Tyr405His	H-2-Kb	8	8	4	KNYHSLVL	KNYYSLVL	NetMHCpan	150	57	0.38	186	0.194	428.416	356.888	0.833	345.02	673.56	57	150	368.7567681	366.2182643	518.4895408	490.6140712	M8_p20	0.428571429	0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.211	186	0	0	NA	18qB2	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	0.953739439	sgMsh2	cell line
chr18	37473936	37473936	T	C	ENSMUST00000050034.2	NA	ENSMUSG00000047033	missense	F/L	74	Pcdhb15	ENSMUST00000050034.2:c.220T>C	ENSMUSP00000059598.1:p.Phe74Leu	H-2-Kb	8	10	2	RLLLLSPL	RFLLLSPL	SMMPMBEC	429.279	192.637	0.449	74	0.135	459.126	249.124	0.543	305.61	971.72	348.4	437.7	163.5836898	480.5515695	192.6371303	429.2793522	M8_p20	2.371428571	2.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.146	74	0	0	NA	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	0.65993345	sgMsh2	cell line
chr18	37021442	37021442	T	C	ENSMUST00000047614.3	1	ENSMUSG00000103310	missense	Y/H	405	Pcdha12	ENSMUST00000047614.3:c.1213T>C	ENSMUSP00000047609.1:p.Tyr405His	H-2-Kb	8	6	6	TFKNYHSL	TFKNYYSL	SMM	267.756	194.42	0.726	186	0.194	366.723	239.62	0.653	359	1171.72	262.6	447.2	194.4195797	267.7564861	216.6406749	286.246378	M8_p20	-0.871428571	-0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.211	186	0	0	NA	18qB2	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	0.953739439	sgMsh2	cell line
chr18	37021442	37021442	T	C	ENSMUST00000047614.3	1	ENSMUSG00000103310	missense	Y/H	405	Pcdha12	ENSMUST00000047614.3:c.1213T>C	ENSMUSP00000047609.1:p.Tyr405His	H-2-Kb	9	5	7	STFKNYHSL	STFKNYYSL	NetMHCpan	15.4	13.9	0.903	186	0.194	61.313	45.651	0.745	16.12	22.6	13.9	15.4	75.18132925	100.0253316	87.34740358	104.5321782	M8_p20	-0.871428571	-0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.211	186	0	0	NA	18qB2	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	0.953739439	sgMsh2	cell line
chr17	84697532	84697532	T	C	ENSMUST00000045714.14	1	ENSMUSG00000024254	missense	F/L	576	Abcg8	ENSMUST00000045714.14:c.1726T>C	ENSMUSP00000035246.8:p.Phe576Leu	H-2-Kb	9	3	9	NSFYLTAGL	NSFYLTAGF	NetMHC	85.47	432.59	5.061	109	0.138	225.767	521.843	2.311	432.59	85.47	325	89.2	611.0967866	362.3347605	709.9863514	410.4403034	M8_p20	1.4	1.4	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.138	109	0	0	NA	17qE4	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	0.623772713	sgMsh2	cell line
chr17	37751964	37751964	A	G	ENSMUST00000174675.3	5	ENSMUSG00000060017	missense	I/V	37	Olfr121	ENSMUST00000174675.3:c.109A>G	ENSMUSP00000133865.3:p.Ile37Val	H-2-Kb	9	11	1	VLLMFLVSL	ILLMFLVSL	NetMHC	127.87	166.59	1.303	618	0.186	185.568	235.147	1.267	166.59	127.87	243.7	206.3	294.5167504	200.0368468	226.5948317	171.0999962	M8_p20	2.785714286	3.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.18	618	0	0	NA	17qB1	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	0.813616583	sgMsh2	cell line
chr18	37302556	37302556	A	G	ENSMUST00000051754.1	NA	ENSMUSG00000045498	missense	Q/R	525	Pcdhb3	ENSMUST00000051754.1:c.1574A>G	ENSMUSP00000059180.1:p.Gln525Arg	H-2-Kb	9	11	1	RAFEFHVGA	QAFEFHVGA	NetMHCpan	110.2	284.7	2.583	183	0.153	481.759	390.709	0.811	172.28	176.02	284.7	110.2	496.7181164	857.254947	579.7623384	787.4989801	M8_p20	0.642857143	0.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.147	183	0	0	NA	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	0.664453543	sgMsh2	cell line
chr17	84697532	84697532	T	C	ENSMUST00000045714.14	1	ENSMUSG00000024254	missense	F/L	576	Abcg8	ENSMUST00000045714.14:c.1726T>C	ENSMUSP00000035246.8:p.Phe576Leu	H-2-Kb	9	4	8	SFYLTAGLM	SFYLTAGFM	NetMHC	185.37	344.02	1.856	109	0.138	368.163	542.485	1.473	344.02	185.37	582.5	462.1	502.4698412	274.2268658	867.4610828	521.4948213	M8_p20	1.271428571	1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.138	109	0	0	NA	17qE4	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	0.623772713	sgMsh2	cell line
chr18	37680939	37680939	G	T	ENSMUST00000192931.1	1	ENSMUSG00000103037	missense	S/I	161	Pcdhgb1	ENSMUST00000192931.1:c.482G>T	ENSMUSP00000141348.1:p.Ser161Ile	H-2-Kb	9	10	2	VIPNPHFSL	VSPNPHFSL	NetMHC	211.65	119.37	0.564	214	0.519	410.119	267.215	0.652	119.37	211.65	107.8	235.3	415.0591573	584.9382211	522.696991	774.9077422	M8_p20	-0.585714286	0.228571429	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.515	214	0	0	NA	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	2	1	sgMsh2	cell line
chr17	56632320	56632320	T	G	ENSMUST00000112979.3	1	ENSMUSG00000040828	missense	F/V	50	Catsperd	ENSMUST00000112979.3:c.148T>G	ENSMUSP00000108603.2:p.Phe50Val	H-2-Kb	9	3	9	LFYAFPNTV	LFYAFPNTF	NetMHCpan	233	338.6	1.453	208	0.183	281.738	333.442	1.184	338.69	258.61	338.6	233	228.6177783	304.8667072	328.2842143	424.864065	M8_p20	0.242857143	0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.177	208	0	0	NA	17qD	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	0.800056306	sgMsh2	cell line
chr18	25340381	25340381	A	G	ENSMUST00000097643.9	5	ENSMUSG00000033632	missense	N/S	414	AW554918	ENSMUST00000097643.9:c.1241A>G	ENSMUSP00000095248.3:p.Asn414Ser	H-2-Kb	9	10	2	YSWLRTQAM	YNWLRTQAM	NetMHCpan	246.9	389.9	1.579	57	0.246	285.227	354.619	1.243	397.05	289.33	389.9	246.9	301.3769268	283.2109234	319.3375581	287.2433612	M8_p20	-0.3	-0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.257	57	0	0	NA	18qA2	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr18	35739535	35739535	C	A	ENSMUST00000115728.4	1	ENSMUSG00000024349	missense	G/C	15	Tmem173	ENSMUST00000115728.4:c.43G>T	ENSMUSP00000111393.3:p.Gly15Cys	H-2-Kb	9	11	1	CHRSKYVAL	GHRSKYVAL	SMM	254.162	445.769	1.754	124	0.194	347.718	763.45	2.196	1039.09	298.93	2837.6	937.9	445.7691405	254.1616376	487.8092149	396.5062159	M8_p20	-0.1	-0.1	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.205	124	0	0	NA	18qB2	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	0.926618886	sgMsh2	cell line
chr18	44847844	44847844	A	G	ENSMUST00000037763.10	1	ENSMUSG00000034653	missense	Q/R	502	Ythdc2	ENSMUST00000037763.10:c.1505A>G	ENSMUSP00000048340.7:p.Gln502Arg	H-2-Kb	9	9	3	FARVFHLIL	FAQVFHLIL	SMM	224.962	422.776	1.879	145	0.152	340.8	495.95	1.455	462.4	364.46	529.5	447.6	422.7756832	224.9624328	563.9622051	317.1392538	M8_p20	1.628571429	1.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.166	145	0	0	NA	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	0.750335293	sgMsh2	cell line
chr18	37941753	37941753	A	G	ENSMUST00000043498.8	1	ENSMUSG00000024454	missense	S/P	312	Hdac3	ENSMUST00000043498.8:c.934T>C	ENSMUSP00000037981.7:p.Ser312Pro	H-2-Kb	9	4	8	RCWTYETPL	RCWTYETSL	SMMPMBEC	408.555	698.634	1.71	313	0.195	457.95	789.442	1.724	880.25	477.4	638	438.5	1244.829868	714.6773197	698.6344547	408.5545015	M8_p20	-0.7	-0.7	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.199	313	0	0	NA	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	0.899498333	sgMsh2	cell line
chr18	75519813	75519813	T	C	ENSMUST00000165559.2	5	ENSMUSG00000052928	missense	K/E	458	Ctif	ENSMUST00000165559.2:c.1372A>G	ENSMUSP00000129974.1:p.Lys458Glu	H-2-Kb	9	3	9	RSFAFTAAE	RSFAFTAAK	SMM	476.552	1897.186	3.981	58	0.362	497.378	1583.55	3.184	1412.21	511.42	1327.6	1067	1897.186388	476.5516746	1754.890407	483.3369531	M8_p20	0.971428571	1.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.395	58	0	0	NA	18qE3	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr18	24017798	24017798	CA	C	ENSMUST00000066497.11	1	ENSMUSG00000051469	FS	L/X	97	Zfp24	ENSMUST00000066497.11:c.290del	ENSMUSP00000064637.5:p.Leu97TrpfsTer31	H-2-Kb	9	16	0	PSYPRSYRL	NA	SMM	79.82	NA	NA	41	0.195	228.119	NA	NA	NA	511.59	NA	329.4	NA	79.81968324	NA	126.8381795	M8_p20	-1.457142857	-1.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.238	41	0	0	NA	18qA2	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr18	44847844	44847844	A	G	ENSMUST00000037763.10	1	ENSMUSG00000034653	missense	Q/R	502	Ythdc2	ENSMUST00000037763.10:c.1505A>G	ENSMUSP00000048340.7:p.Gln502Arg	H-2-Kb	9	7	5	DAFARVFHL	DAFAQVFHL	NetMHCpan	355	1026.1	2.89	145	0.152	436.068	1456.594	3.34	1952.22	609.77	1026.1	355	1233.417199	408.4228203	1679.770694	463.713778	M8_p20	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.166	145	0	0	NA	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	0.750335293	sgMsh2	cell line
chr2	24953277	24953277	T	C	ENSMUST00000028350.8	1	ENSMUSG00000026974	missense	V/A	87	Zmynd19	ENSMUST00000028350.8:c.260T>C	ENSMUSP00000028350.3:p.Val87Ala	H-2-Db	9	10	2	VAHLNAVTV	VVHLNAVTV	NetMHC	8.32	172.04	20.678	121	0.157	28.28	261.657	9.252	172.04	8.32	293.9	20.7	229.4140437	35.86080216	327.0167515	51.23538453	M8_p20	0.942857143	1.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.164	121	0	0	NA	2qA3	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	0.741295109	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Db	9	5	9	SNVVNHFFV	SNVVNHFFC	NetMHC	33.28	4264.52	128.141	269	0.398	169.809	3110.826	18.32	4264.52	33.28	4326.5	48.8	1957.131469	290.8171406	1310.901318	321.7881152	M8_p20	1.642857143	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.408	269	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.9	4.068082914	NA	3	1	sgMsh2	cell line
chr19	59300736	59300736	T	C	ENSMUST00000099274.3	1	ENSMUSG00000074746	missense	Y/C	744	Pdzd8	ENSMUST00000099274.3:c.2231A>G	ENSMUSP00000096880.2:p.Tyr744Cys	H-2-Db	9	4	8	LATSNMECL	LATSNMEYL	NetMHC	39.91	13.44	0.337	448	0.165	220.272	33.702	0.153	13.44	39.91	18.7	202	56.96656068	318.8746537	48.70460214	238.5448253	M8_p20	-0.042857143	-0.042857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.171	448	0	0	NA	19qD3	chr19-6054831-61227351	6	4	2	0.9	4.068082914	NA	1	0.772935754	sgMsh2	cell line
chr19	44238510	44238510	C	T	ENSMUST00000026220.6	1	ENSMUSG00000025202	missense	T/I	261	Scd3	ENSMUST00000026220.6:c.782C>T	ENSMUSP00000026220.5:p.Thr261Ile	H-2-Db	9	5	7	AVVLNAIWL	AVVLNATWL	NetMHC	160.36	33.85	0.211	167	0.168	350.244	141.494	0.404	33.85	160.36	120.2	490	162.7871051	337.7691648	179.7090714	362.7187449	M8_p20	1.957142857	2.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.168	167	0	0	NA	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.068082914	NA	1	0.759375477	sgMsh2	cell line
chr2	31207697	31207697	A	G	ENSMUST00000056433.6	1	ENSMUSG00000000194	missense	K/R	441	Gpr107	ENSMUST00000056433.6:c.1322A>G	ENSMUSP00000056739.5:p.Lys441Arg	H-2-Db	9	4	8	KAAINLARL	KAAINLAKL	NetMHCpan	101.4	102.4	1.01	294	0.241	325.555	235.751	0.724	167.68	392.01	102.4	101.4	303.8225469	298.2771604	364.3929785	352.8336521	M8_p20	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.236	294	0	0	NA	2qB	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr2	24687761	24687761	A	G	ENSMUST00000041342.11	1	ENSMUSG00000004113	missense	L/P	700	Cacna1b	ENSMUST00000041342.11:c.2099T>C	ENSMUSP00000037416.5:p.Leu700Pro	H-2-Db	9	4	8	TLFGNYTPL	TLFGNYTLL	NetMHCpan	113.2	549.8	4.857	143	0.168	218.505	712.435	3.26	2806.17	647.6	549.8	113.2	840.6592577	260.9876759	584.2113633	176.0232357	M8_p20	-0.128571429	-1.27E-16	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.177	143	0	0	NA	2qA3	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	0.800056306	sgMsh2	cell line
chr2	22577871	22577871	T	C	ENSMUST00000044749.13	5	ENSMUSG00000025716	missense	V/A	1317	Myo3a	ENSMUST00000044749.13:c.3950T>C	ENSMUSP00000046329.7:p.Val1317Ala	H-2-Db	9	10	2	SAVTQNAPL	SVVTQNAPL	SMMPMBEC	357.742	2283.337	6.383	153	0.196	496.921	3714.743	7.476	9108.98	745.43	4105.8	474.3	3323.686094	519.5412082	2283.336925	357.7420571	M8_p20	0.071428571	0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.199	153	0	0	NA	2qA3	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	0.899498333	sgMsh2	cell line
chr2	30828146	30828146	T	C	ENSMUST00000041726.3	1	ENSMUSG00000039483	missense	Y/C	14	Asb6	ENSMUST00000041726.3:c.41A>G	ENSMUSP00000043462.3:p.Tyr14Cys	H-2-Kb	8	7	5	IIFECQPL	IIFEYQPL	NetMHC	11.78	2.21	0.188	27	0.259	22.724	2.306	0.101	2.21	11.78	4.4	28.6	1.96218522	21.96544469	2.402923806	23.48226582	M8_p20	0.714285714	0.814285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.278	27	0	0	NA	2qB	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr2	22623815	22623815	A	T	ENSMUST00000028123.3	1	ENSMUSG00000026787	missense	N/I	88	Gad2	ENSMUST00000028123.3:c.263A>T	ENSMUSP00000028123.3:p.Asn88Ile	H-2-Kb	8	10	2	VIYAFLHA	VNYAFLHA	NetMHC	12.56	11.57	0.921	43	0.372	28.2	24.188	0.858	11.57	12.56	16.7	33.2	31.67670499	28.42758718	33.47649647	27.97306149	M8_p20	1.457142857	1.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.393	43	0	0	NA	2qA3	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	2	1	sgMsh2	cell line
chr19	13502426	13502426	A	G	ENSMUST00000217001.1	2	ENSMUSG00000071629	missense	I/V	28	Olfr1477	ENSMUST00000217001.1:c.82A>G	ENSMUSP00000149565.1:p.Ile28Val	H-2-Kb	8	11	1	VIFTLIYL	IIFTLIYL	SMM	15.267	16.283	1.067	792	0.198	17.014	18.256	1.073	19.54	16.62	27.2	23.8	16.2832091	15.26651821	16.97227266	17.40764414	M8_p20	2.485714286	2.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.193	792	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.9	4.068082914	NA	1	0.87237778	sgMsh2	cell line
chr2	31207697	31207697	A	G	ENSMUST00000056433.6	1	ENSMUSG00000000194	missense	K/R	441	Gpr107	ENSMUST00000056433.6:c.1322A>G	ENSMUSP00000056739.5:p.Lys441Arg	H-2-Kb	8	5	7	AAINLARL	AAINLAKL	NetMHC	45.63	189.95	4.163	294	0.241	104.51	266.237	2.547	189.95	45.63	211.3	91.6	351.3500341	122.9532464	321.1737185	117.4194387	M8_p20	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.236	294	0	0	NA	2qB	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr19	31083190	31083190	T	C	ENSMUST00000066039.7	NA	ENSMUSG00000053536	missense	V/A	42	Cstf2t	ENSMUST00000066039.7:c.125T>C	ENSMUSP00000093831.3:p.Val42Ala	H-2-Kb	8	10	2	SAVSFRLV	SVVSFRLV	NetMHC	48.4	61.89	1.279	204	0.142	173.249	174.631	1.008	61.89	48.4	95.9	94.3	256.2949211	252.1970487	253.3611374	273.9933359	M8_p20	1.642857143	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.154	204	0	0	NA	19qC1	chr19-6054831-61227351	6	4	2	0.9	4.068082914	NA	1	0.696094187	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	8	13	1	VTFPHYWL	NA	NetMHCpan	13.9	NA	NA	269	0.398	31.617	NA	NA	NA	50.29	NA	13.9	NA	24.5323979	NA	38.70258739	M8_p20	-0.157142857	-0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.408	269	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.9	4.068082914	NA	3	1	sgMsh2	cell line
chr19	40913472	40913472	A	C	ENSMUST00000050092.6	2	ENSMUSG00000049164	missense	N/T	615	Zfp518a	ENSMUST00000050092.6:c.1844A>C	ENSMUSP00000055956.6:p.Asn615Thr	H-2-Kb	8	10	2	ITYVNSEL	INYVNSEL	NetMHCpan	34.1	25.6	0.751	589	0.18	58.288	69.414	1.191	66.26	58.4	25.6	34.1	73.74625996	66.18201718	72.56713881	58.17548331	M8_p20	-0.257142857	-0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.182	589	0	0	NA	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.068082914	NA	1	0.822656767	sgMsh2	cell line
chr2	31207697	31207697	A	G	ENSMUST00000056433.6	1	ENSMUSG00000000194	missense	K/R	441	Gpr107	ENSMUST00000056433.6:c.1322A>G	ENSMUSP00000056739.5:p.Lys441Arg	H-2-Kb	8	7	5	INLARLRL	INLAKLRL	NetMHCpan	74.3	156.3	2.104	294	0.241	185.389	321.112	1.732	315.08	157.11	156.3	74.3	327.1447838	213.6682534	353.7854762	227.3735801	M8_p20	0.1	0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.236	294	0	0	NA	2qB	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	8	8	6	VNHFFVTF	VNHFFCDI	NetMHCpan	52.1	72.4	1.39	269	0.398	262.687	291.68	1.11	265.13	217.24	72.4	52.1	318.2291802	353.7854762	330.1718172	308.1342684	M8_p20	0.742857143	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.408	269	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.9	4.068082914	NA	3	1	sgMsh2	cell line
chr2	24687761	24687761	A	G	ENSMUST00000041342.11	1	ENSMUSG00000004113	missense	L/P	700	Cacna1b	ENSMUST00000041342.11:c.2099T>C	ENSMUSP00000037416.5:p.Leu700Pro	H-2-Kb	8	5	7	LFGNYTPL	LFGNYTLL	SMMPMBEC	165.097	454.716	2.754	143	0.168	222.376	562.888	2.531	663.17	251.67	614.4	324.9	511.3755976	193.0812048	454.715753	165.0973111	M8_p20	-0.128571429	-0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.177	143	0	0	NA	2qA3	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	0.800056306	sgMsh2	cell line
chr19	5982837	5982837	A	C	ENSMUST00000041827.7	1	ENSMUSG00000037451	missense	S/A	267	Slc22a20	ENSMUST00000041827.7:c.799T>G	ENSMUSP00000049473.7:p.Ser267Ala	H-2-Kb	8	6	6	VFFLYAWW	VFFLYSWW	SMM	21.22	47.945	2.259	64	0.078	168.912	331.805	1.964	564.13	295.97	4006.7	4116.2	47.94463315	21.21973715	99.48096742	41.85429201	M8_p20	1.157142857	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.121	64	0	0	NA	19qA	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	sgMsh2	cell line
chr2	32237505	32237505	C	T	ENSMUST00000036473.15	1	ENSMUSG00000039254	missense	A/V	61	Pomt1	ENSMUST00000036473.15:c.182C>T	ENSMUSP00000038722.9:p.Ala61Val	H-2-Kb	8	4	8	WQLSYPRV	WQLSYPRA	SMMPMBEC	349.736	1681.667	4.808	87	0.195	488.703	4398.254	9	6517.53	595.69	7854.8	1496.1	2278.977303	381.7156799	1681.666993	349.7357273	M8_p20	-0.528571429	-0.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.185	87	0	0	NA	2qB	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	0.836217043	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	8	17	0	HYWLFLAL	NA	SMMPMBEC	198.948	NA	NA	269	0.398	324.952	NA	NA	NA	632.06	NA	372.1	NA	277.8049629	NA	198.9481935	M8_p20	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.408	269	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.9	4.068082914	NA	3	1	sgMsh2	cell line
chr19	16383254	16383254	G	A	ENSMUST00000025541.5	1	ENSMUSG00000024639	missense	V/M	314	Gnaq	ENSMUST00000025541.5:c.940G>A	ENSMUSP00000025541.5:p.Val314Met	H-2-Kb	8	6	6	ILKMFMDL	ILKMFVDL	NetMHCpan	249.7	319.7	1.28	238	0.134	388.374	474.546	1.222	1460.9	633.96	319.7	249.7	595.3056439	459.9811133	353.7854762	316.7670499	M8_p20	0.971428571	1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.147	238	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.9	4.068082914	NA	1	0.664453543	sgMsh2	cell line
chr19	3948632	3948632	A	G	ENSMUST00000162708.6	1	ENSMUSG00000036908	missense	K/R	517	Unc93b1	ENSMUST00000162708.6:c.1550A>G	ENSMUSP00000124272.1:p.Lys517Arg	H-2-Kb	9	4	8	SSLPMKARL	SSLPMKAKL	NetMHC	44.92	155.55	3.463	94	0.191	188.011	364.422	1.938	155.55	44.92	303	126.5	455.1033161	249.5226649	425.8434778	282.000579	M8_p20	0.185714286	0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.196	94	0	0	NA	19qA	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	sgMsh2	cell line
chr2	24687761	24687761	A	G	ENSMUST00000041342.11	1	ENSMUSG00000004113	missense	L/P	700	Cacna1b	ENSMUST00000041342.11:c.2099T>C	ENSMUSP00000037416.5:p.Leu700Pro	H-2-Kb	9	4	8	TLFGNYTPL	TLFGNYTLL	NetMHCpan	51	85.6	1.678	143	0.168	88.814	134.728	1.517	105.68	60.07	85.6	51	193.2457716	151.7434661	163.775902	117.5574075	M8_p20	-0.128571429	-1.27E-16	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.177	143	0	0	NA	2qA3	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	0.800056306	sgMsh2	cell line
chr2	22623815	22623815	A	T	ENSMUST00000028123.3	1	ENSMUSG00000026787	missense	N/I	88	Gad2	ENSMUST00000028123.3:c.263A>T	ENSMUSP00000028123.3:p.Asn88Ile	H-2-Kb	9	10	2	VIYAFLHAT	VNYAFLHAT	NetMHC	86.92	51.19	0.589	43	0.372	108.038	73.799	0.683	51.19	86.92	34.1	88.4	96.40731774	127.6762152	113.8282345	151.7923903	M8_p20	0.714285714	1.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.393	43	0	0	NA	2qA3	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	2	1	sgMsh2	cell line
chr19	46330262	46330262	T	C	ENSMUST00000026256.8	1	ENSMUSG00000025226	missense	F/L	292	Fbxl15	ENSMUST00000026256.8:c.874T>C	ENSMUSP00000026256.2:p.Phe292Leu	H-2-Kb	9	11	3	AGLAPFVNL	AGFAPFVNL	NetMHC	88.63	26.77	0.302	136	0.154	499.613	173.054	0.346	26.77	88.63	21	113.6	325.1696473	912.2418667	319.3375581	885.62527	M8_p20	1.614285714	1.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.165	136	0	0	NA	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.068082914	NA	1	0.745815201	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	9	13	1	VTFPHYWLF	NA	NetMHCpan	32	NA	NA	269	0.398	35.13	NA	NA	NA	109.74	NA	32	NA	35.08407252	NA	35.17628732	M8_p20	0.342857143	0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.408	269	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.9	4.068082914	NA	3	1	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	9	7	7	VVNHFFVTF	VVNHFFCDI	SMM	104.018	301.377	2.897	269	0.398	110.553	279.147	2.525	290.84	180.67	126.9	112.4	301.3769268	104.0183595	267.4545558	108.7051201	M8_p20	0.742857143	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.408	269	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.9	4.068082914	NA	3	1	sgMsh2	cell line
chr2	30828146	30828146	T	C	ENSMUST00000041726.3	1	ENSMUSG00000039483	missense	Y/C	14	Asb6	ENSMUST00000041726.3:c.41A>G	ENSMUSP00000043462.3:p.Tyr14Cys	H-2-Kb	9	7	5	IIFECQPLV	IIFEYQPLV	NetMHC	218.58	32.33	0.148	27	0.259	345.586	73.14	0.212	32.33	218.58	47.4	587.5	98.88035114	331.2150024	111.7506351	359.9564831	M8_p20	0.671428571	0.814285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.278	27	0	0	NA	2qB	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr2	31207697	31207697	A	G	ENSMUST00000056433.6	1	ENSMUSG00000000194	missense	K/R	441	Gpr107	ENSMUST00000056433.6:c.1322A>G	ENSMUSP00000056739.5:p.Lys441Arg	H-2-Kb	9	7	5	INLARLRLF	INLAKLRLF	SMM	221.366	331.215	1.496	294	0.241	236.336	355.812	1.506	295.92	230.43	501.3	275	331.2150024	221.3655323	380.4083139	242.2423104	M8_p20	1	1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.236	294	0	0	NA	2qB	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr19	16383254	16383254	G	A	ENSMUST00000025541.5	1	ENSMUSG00000024639	missense	V/M	314	Gnaq	ENSMUST00000025541.5:c.940G>A	ENSMUSP00000025541.5:p.Val314Met	H-2-Kb	9	5	7	FILKMFMDL	FILKMFVDL	NetMHC	268.8	623.27	2.319	238	0.134	358.268	502.216	1.402	623.27	268.8	645.4	411.6	381.1623536	362.3347605	317.8703353	354.201177	M8_p20	0.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.147	238	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.9	4.068082914	NA	1	0.664453543	sgMsh2	cell line
chr2	32237505	32237505	C	T	ENSMUST00000036473.15	1	ENSMUSG00000039254	missense	A/V	61	Pomt1	ENSMUST00000036473.15:c.182C>T	ENSMUSP00000038722.9:p.Ala61Val	H-2-Kb	9	6	6	LSYPRVVVF	LSYPRAVVF	NetMHCpan	129	123.9	0.96	87	0.195	209.79	244.459	1.165	526.22	450.53	123.9	129	264.9171047	246.0990856	224.0010221	173.4802343	M8_p20	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.185	87	0	0	NA	2qB	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	0.836217043	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	9	17	0	HYWLFLALV	NA	SMM	304.166	NA	NA	269	0.398	437.286	NA	NA	NA	459.38	NA	1465.1	NA	304.1655332	NA	415.1929781	M8_p20	2.757142857	2.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.408	269	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.9	4.068082914	NA	3	1	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	9	14	0	TFPHYWLFL	NA	NetMHCpan	353	NA	NA	269	0.398	400.076	NA	NA	NA	462.8	NA	353	NA	426.6875784	NA	373.4650797	M8_p20	0.485714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.408	269	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.9	4.068082914	NA	3	1	sgMsh2	cell line
chr2	29872892	29872892	A	G	ENSMUST00000047521.6	1	ENSMUSG00000039787	missense	T/A	213	Cercam	ENSMUST00000047521.6:c.637A>G	ENSMUSP00000041622.6:p.Thr213Ala	H-2-Kb	9	8	4	VHSAFLLSL	VHSTFLLSL	NetMHCpan	148.8	139.3	0.936	50	0.16	484.486	399.176	0.824	362.59	479.07	139.3	148.8	437.6329367	489.9028884	435.7626466	519.0987702	M8_p20	2.057142857	2.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.176	50	0	0	NA	2qB	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	0.795536214	sgMsh2	cell line
chr19	5982837	5982837	A	C	ENSMUST00000041827.7	1	ENSMUSG00000037451	missense	S/A	267	Slc22a20	ENSMUST00000041827.7:c.799T>G	ENSMUSP00000049473.7:p.Ser267Ala	H-2-Kb	9	6	6	VFFLYAWWL	VFFLYSWWL	SMM	111.715	68.251	0.611	64	0.078	477.142	326.92	0.685	561.53	819.31	1138.8	1653.8	68.25115418	111.7146168	92.31026548	134.9739632	M8_p20	1.3	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.121	64	0	0	NA	19qA	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	9	16	0	PHYWLFLAL	NA	SMM	166.001	NA	NA	269	0.398	366.318	NA	NA	NA	971.99	NA	541.1	NA	166.0007308	NA	191.5358177	M8_p20	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.408	269	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.9	4.068082914	NA	3	1	sgMsh2	cell line
chr2	86356297	86356297	CA	C	ENSMUST00000216547.1	5	ENSMUSG00000075188	FS	F/X	28	Olfr1056	ENSMUST00000216547.1:c.84del	ENSMUSP00000149545.1:p.Phe28LeufsTer18	H-2-Db	9	13	0	YSFSSMLPL	NA	NetMHCpan	55.5	NA	NA	255	0.149	126.765	NA	NA	NA	60.08	NA	55.5	NA	209.7104152	NA	193.4505639	M8_p20	1.3	1.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.155	255	0	0	NA	2qD	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	1	0.70061428	sgMsh2	cell line
chr2	35085337	35085337	AT	A	ENSMUST00000045776.4	1	ENSMUSG00000035875	FS	K/X	283	AI182371	ENSMUST00000045776.4:c.849del	ENSMUSP00000037754.5:p.Lys283AsnfsTer22	H-2-Db	9	7	5	PMIKNAVTM	NA	SMM	86.222	NA	NA	225	0.271	120.809	NA	NA	NA	111.43	NA	338.5	NA	86.2223787	NA	130.1877136	M8_p20	0.614285714	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.27	225	0	0	NA	2qB	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr2	88006632	88006632	T	G	ENSMUST00000099839.3	NA	ENSMUSG00000075141	missense	M/L	49	Olfr1160	ENSMUST00000099839.3:c.145A>C	ENSMUSP00000097427.3:p.Met49Leu	H-2-Db	9	3	9	FSIYSITLL	FSIYSITLM	NetMHC	196.44	127.02	0.647	574	0.078	334.623	267.366	0.799	127.02	196.44	241.9	253.7	292.8329887	415.5468552	336.9535219	439.1066356	M8_p20	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.089	574	0	0	NA	2qD	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	1	0.402288199	sgMsh2	cell line
chr2	88006632	88006632	T	G	ENSMUST00000099839.3	NA	ENSMUSG00000075141	missense	M/L	49	Olfr1160	ENSMUST00000099839.3:c.145A>C	ENSMUSP00000097427.3:p.Met49Leu	H-2-Db	9	6	6	YSITLLGNI	YSITLMGNI	NetMHC	256.69	185.65	0.723	574	0.078	487.354	413.213	0.848	185.65	256.69	1299.1	1238	453.5445995	515.9647117	372.8807814	458.7435806	M8_p20	1.714285714	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.089	574	0	0	NA	2qD	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	1	0.402288199	sgMsh2	cell line
chr2	88412518	88412518	T	C	ENSMUST00000217320.2	5	ENSMUSG00000081836	missense	T/A	47	Olfr1180	ENSMUST00000217320.2:c.139A>G	ENSMUSP00000150965.1:p.Thr47Ala	H-2-Kb	8	6	6	VSITCAQL	VSITCTQL	NetMHC	10.96	40.72	3.715	334	0.105	22.798	65.742	2.884	40.72	10.96	85.9	36	73.57664827	25.74779247	57.90819124	19.84906254	M8_p20	1.085714286	1.142857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.107	334	0	0	NA	2qD	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	1	0.483649858	sgMsh2	cell line
chr2	88006632	88006632	T	G	ENSMUST00000099839.3	NA	ENSMUSG00000075141	missense	M/L	49	Olfr1160	ENSMUST00000099839.3:c.145A>C	ENSMUSP00000097427.3:p.Met49Leu	H-2-Kb	8	4	8	SIYSITLL	SIYSITLM	NetMHC	23.89	82.42	3.45	574	0.078	68.167	260.849	3.827	82.42	23.89	64.5	24.2	480.5515695	119.8781411	439.2785529	112.1346934	M8_p20	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.089	574	0	0	NA	2qD	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	1	0.402288199	sgMsh2	cell line
chr2	86356297	86356297	CA	C	ENSMUST00000216547.1	5	ENSMUSG00000075188	FS	F/X	28	Olfr1056	ENSMUST00000216547.1:c.84del	ENSMUSP00000149545.1:p.Phe28LeufsTer18	H-2-Kb	8	11	1	LYYSFSSM	NA	NetMHC	25.36	NA	NA	255	0.149	67.203	NA	NA	NA	25.36	NA	28.3	NA	122.6704617	NA	106.106014	M8_p20	-0.042857143	0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.155	255	0	0	NA	2qD	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	1	0.70061428	sgMsh2	cell line
chr2	85786374	85786374	T	C	ENSMUST00000215945.1	5	ENSMUSG00000033850	missense	F/L	288	Olfr1015	ENSMUST00000215945.1:c.862T>C	ENSMUSP00000148957.1:p.Phe288Leu	H-2-Kb	8	4	8	INPLLNPL	INPLLNPF	NetMHC	54.38	1179.23	21.685	264	0.125	137.353	1709.61	12.447	1179.23	54.38	1406.7	150.9	2012.51905	123.8055176	2012.51905	160.228586	M8_p20	0.171428571	0.271428571	FALSE	FALSE	FALSE	0	FALSE	2	Mutect2;Strelka2;MuSe;Vardict	4	0.14	264	0	0	NA	2qD	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	1	0.632812898	sgMsh2	cell line
chr2	76633559	76633559	C	G	ENSMUST00000002808.6	1	ENSMUSG00000002731	missense	G/A	253	Prkra	ENSMUST00000002808.6:c.758G>C	ENSMUSP00000002808.6:p.Gly253Ala	H-2-Kb	8	10	2	QAFNITYL	QGFNITYL	NetMHC	165.08	354.06	2.145	140	0.243	336.593	461.286	1.37	354.06	165.08	338	183.7	568.5124764	489.4856902	598.0534499	544.1767718	M8_p20	1.057142857	1.057142857	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.233	140	0	0	NA	2qC3	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr2	119139420	119139420	GT	G	ENSMUST00000094695.11	1	ENSMUSG00000070730	FS	T/X	387	Rmdn3	ENSMUST00000094695.11:c.1159del	ENSMUSP00000092283.5:p.Thr387ArgfsTer46	H-2-Kb	8	37	0	YSQDFQKL	NA	SMM	227.898	NA	NA	95	0.389	263.57	NA	NA	NA	233.55	NA	302.9	NA	227.8977303	NA	293.5891489	M8_p20	-1.228571429	-1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.363	95	0	0	NA	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	2	1	sgMsh2	cell line
chr2	66689647	66689647	G	A	ENSMUST00000042792.6	1	ENSMUSG00000034810	missense	A/V	971	Scn7a	ENSMUST00000042792.6:c.2912C>T	ENSMUSP00000042405.6:p.Ala971Val	H-2-Kb	8	11	1	VDMIFAYI	ADMIFAYI	NetMHCpan	118	520.5	4.411	143	0.203	143.967	576.267	4.003	2100.7	342.17	520.5	118	632.0333573	167.7799266	411.8508816	120.1544888	M8_p20	1.528571429	1.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.221	143	0	0	NA	2qC1.3	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	0.99894036	sgMsh2	cell line
chr2	37405335	37405335	A	C	ENSMUST00000100143.9	5	ENSMUSG00000075376	missense	V/G	223	Rc3h2	ENSMUST00000100143.9:c.668T>G	ENSMUSP00000097721.3:p.Val223Gly	H-2-Kb	8	8	4	VLFGVQRL	VLFVVQRL	NetMHCpan	165.8	52.4	0.316	177	0.232	207.26	71.12	0.343	63.22	364.58	52.4	165.8	79.02054124	199.8664966	79.93555598	214.6545013	M8_p20	0.885714286	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.234	177	0	0	NA	2qB	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr2	90296129	90296129	A	G	ENSMUST00000214356.2	3	ENSMUSG00000080809	missense	V/A	244	Olfr1273-ps	ENSMUST00000214356.2:c.731T>C	ENSMUSP00000150797.1:p.Val244Ala	H-2-Kb	8	10	2	VAILFFGP	VVILFFGP	SMM	225.289	228.95	1.016	559	0.161	379.677	484.135	1.275	739.32	511.76	1159.7	523.3	228.9496585	225.2890066	228.9496585	247.5939338	M8_p20	1.957142857	2.785714286	FALSE	FALSE	TRUE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.157	559	0	0	NA	2qE1	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	1	0.709654464	sgMsh2	cell line
chr2	92380460	92380460	T	C	ENSMUST00000028650.8	1	ENSMUSG00000027222	missense	V/A	313	Pex16	ENSMUST00000028650.8:c.938T>C	ENSMUSP00000028650.8:p.Val313Ala	H-2-Kb	8	11	1	AGLVARPL	VGLVARPL	SMMPMBEC	414.706	120.987	0.292	217	0.161	476.22	115.919	0.243	65.37	534.86	207.8	921.1	110.8510982	417.5802981	120.9873599	414.7056956	M8_p20	1.014285714	1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.175	217	0	0	NA	2qE1	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	1	0.791016122	sgMsh2	cell line
chr2	86356297	86356297	CA	C	ENSMUST00000216547.1	5	ENSMUSG00000075188	FS	F/X	28	Olfr1056	ENSMUST00000216547.1:c.84del	ENSMUSP00000149545.1:p.Phe28LeufsTer18	H-2-Kb	8	8	4	APFLYYSF	APFFVLFF	SMMPMBEC	321.174	6835.023	21.281	255	0.149	460.694	6780.381	14.718	10301.19	662.66	5203.2	542.3	6725.738845	379.0879676	6835.02331	321.1737185	M8_p20	0.628571429	0.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.155	255	0	0	NA	2qD	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	1	0.70061428	sgMsh2	cell line
chr2	90296129	90296129	A	G	ENSMUST00000214356.2	3	ENSMUSG00000080809	missense	V/A	244	Olfr1273-ps	ENSMUST00000214356.2:c.731T>C	ENSMUSP00000150797.1:p.Val244Ala	H-2-Kb	8	11	1	AILFFGPA	VILFFGPA	SMMPMBEC	255.705	74.6	0.292	559	0.161	409.107	103.202	0.252	125.17	696.41	173	512.2	81.23440428	306.013087	74.60020141	255.7054591	M8_p20	1.957142857	1.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.157	559	0	0	NA	2qE1	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	1	0.709654464	sgMsh2	cell line
chr2	86356297	86356297	CA	C	ENSMUST00000216547.1	5	ENSMUSG00000075188	FS	F/X	28	Olfr1056	ENSMUST00000216547.1:c.84del	ENSMUSP00000149545.1:p.Phe28LeufsTer18	H-2-Kb	9	11	1	LYYSFSSML	NA	NetMHC	26.67	NA	NA	255	0.149	32.753	NA	NA	NA	26.67	NA	31.3	NA	34.20660715	NA	62.40939895	M8_p20	0.685714286	0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.155	255	0	0	NA	2qD	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	1	0.70061428	sgMsh2	cell line
chr2	90296129	90296129	A	G	ENSMUST00000214356.2	3	ENSMUSG00000080809	missense	V/A	244	Olfr1273-ps	ENSMUST00000214356.2:c.731T>C	ENSMUSP00000150797.1:p.Val244Ala	H-2-Kb	9	10	2	VAILFFGPA	VVILFFGPA	NetMHC	27.49	37.64	1.369	559	0.161	72.942	107.929	1.48	37.64	27.49	98.3	44.2	120.2568988	106.9325688	117.5574075	101.6833861	M8_p20	1.957142857	2.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.157	559	0	0	NA	2qE1	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	1	0.709654464	sgMsh2	cell line
chr2	88391594	88391594	A	C	ENSMUST00000214040.2	5	ENSMUSG00000056995	missense	M/L	116	Olfr1178	ENSMUST00000214040.2:c.346A>C	ENSMUSP00000150036.1:p.Met116Leu	H-2-Kb	9	11	1	LAYDRYVAI	MAYDRYVAI	NetMHCpan	22.6	14.4	0.637	393	0.148	36.184	30.259	0.836	27.08	38.93	14.4	22.6	39.27443988	44.06664633	33.43874735	33.43874735	M8_p20	-0.014285714	-0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.136	393	0	0	NA	2qD	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	1	0.614732529	sgMsh2	cell line
chr2	86356297	86356297	CA	C	ENSMUST00000216547.1	5	ENSMUSG00000075188	FS	F/X	28	Olfr1056	ENSMUST00000216547.1:c.84del	ENSMUSP00000149545.1:p.Phe28LeufsTer18	H-2-Kb	9	13	0	YSFSSMLPL	NA	NetMHCpan	49.6	NA	NA	255	0.149	116.235	NA	NA	NA	73.94	NA	49.6	NA	158.5294672	NA	190.6557905	M8_p20	1.3	1.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.155	255	0	0	NA	2qD	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	1	0.70061428	sgMsh2	cell line
chr2	111335694	111335694	C	A	ENSMUST00000099618.1	NA	ENSMUSG00000096554	missense	R/M	128	Olfr1282	ENSMUST00000099618.1:c.383G>T	ENSMUSP00000097213.1:p.Arg128Met	H-2-Kb	9	10	2	CMPLHYSSI	CRPLHYSSI	NetMHC	94.4	1410.95	14.947	1093	0.265	136.949	1266.807	9.25	1410.95	94.4	2800.2	169.4	724.6194716	104.4984864	1122.664526	174.2809827	M8_p20	0.085714286	0.185714286	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.264	1093	0	0	NA	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr2	76894297	76894297	T	C	ENSMUST00000111846.8	5	ENSMUSG00000051747	missense	E/G	5457	Ttn	ENSMUST00000111846.8:c.16370A>G	ENSMUSP00000107477.2:p.Glu5457Gly	H-2-Kb	9	4	8	VWYRNEHGL	VWYRNEHEL	SMM	56.378	64.731	1.148	139	0.173	101.218	135.661	1.34	151.58	94.48	302.1	252	64.73065476	56.37804345	119.7429629	107.9567993	M8_p20	-1.8	-1.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.169	139	0	0	NA	2qC3	chr2-76867311-82253895	4	2	2	0.9	4.068082914	NA	1	0.763895569	sgMsh2	cell line
chr2	86356297	86356297	CA	C	ENSMUST00000216547.1	5	ENSMUSG00000075188	FS	F/X	28	Olfr1056	ENSMUST00000216547.1:c.84del	ENSMUSP00000149545.1:p.Phe28LeufsTer18	H-2-Kb	9	10	2	FLYYSFSSM	NA	NetMHCpan	67.4	NA	NA	255	0.149	175.671	NA	NA	NA	113.05	NA	67.4	NA	238.292295	NA	271.1752193	M8_p20	-0.042857143	0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.155	255	0	0	NA	2qD	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	1	0.70061428	sgMsh2	cell line
chr2	68118819	68118819	A	G	ENSMUST00000112346.2	NA	ENSMUSG00000034780	missense	S/G	293	B3galt1	ENSMUST00000112346.2:c.877A>G	ENSMUSP00000107965.2:p.Ser293Gly	H-2-Kb	9	10	2	YGLCRYRRV	YSLCRYRRV	NetMHC	124.84	39.29	0.315	348	0.284	342.339	134.347	0.392	39.29	124.84	116.2	280.8	165.6189397	475.4556362	152.4930322	403.8778168	M8_p20	-0.614285714	-0.614285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.281	348	0	0	NA	2qC1.3	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr2	86160001	86160001	T	C	ENSMUST00000215624.1	NA	ENSMUSG00000075202	missense	Y/C	123	Olfr1042	ENSMUST00000215624.1:c.368A>G	ENSMUSP00000151053.1:p.Tyr123Cys	H-2-Kb	9	6	6	MAYDRCVAI	MAYDRYVAI	NetMHCpan	132.7	14.4	0.109	584	0.175	145.305	30.259	0.208	27.08	145.65	14.4	132.7	39.27443988	184.1238299	33.43874735	144.9606074	M8_p20	0.528571429	0.528571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.178	584	0	0	NA	2qD	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	1	0.804576399	sgMsh2	cell line
chr2	91284247	91284247	A	G	ENSMUST00000102594.10	1	ENSMUSG00000040591	missense	F/L	147	1110051M20Rik	ENSMUST00000102594.10:c.439T>C	ENSMUSP00000099654.4:p.Phe147Leu	H-2-Kb	9	8	4	QIQLYYSEF	QIQFYYSEF	SMM	177.873	191.034	1.074	300	0.203	233.567	248.13	1.062	224.46	181.21	352.1	442.3	191.0337056	177.8729877	271.8003427	285.9235978	M8_p20	-0.542857143	-0.3	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.191	300	0	0	NA	2qE1	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	1	0.863337596	sgMsh2	cell line
chr2	119139420	119139420	GT	G	ENSMUST00000094695.11	1	ENSMUSG00000070730	FS	T/X	387	Rmdn3	ENSMUST00000094695.11:c.1159del	ENSMUSP00000092283.5:p.Thr387ArgfsTer46	H-2-Kb	9	45	0	DGYIFLSAI	NA	NetMHC	187.49	NA	NA	95	0.389	309.473	NA	NA	NA	187.49	NA	212.4	NA	406.5462879	NA	510.7989549	M8_p20	2.185714286	2.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.363	95	0	0	NA	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	2	1	sgMsh2	cell line
chr2	91284247	91284247	A	G	ENSMUST00000102594.10	1	ENSMUSG00000040591	missense	F/L	147	1110051M20Rik	ENSMUST00000102594.10:c.439T>C	ENSMUSP00000099654.4:p.Phe147Leu	H-2-Kb	9	9	3	IQLYYSEFL	IQFYYSEFL	NetMHCpan	192.4	29.6	0.154	300	0.203	382.31	125.453	0.328	51.33	204.72	29.6	192.4	199.5767748	559.8993973	219.4067579	608.4851727	M8_p20	0.5	0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.191	300	0	0	NA	2qE1	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	1	0.863337596	sgMsh2	cell line
chr2	91284247	91284247	A	G	ENSMUST00000102594.10	1	ENSMUSG00000040591	missense	F/L	147	1110051M20Rik	ENSMUST00000102594.10:c.439T>C	ENSMUSP00000099654.4:p.Phe147Leu	H-2-Kb	9	3	9	FLFAFQIQL	FLFAFQIQF	NetMHCpan	235.9	1129.7	4.789	300	0.203	317.333	742.822	2.341	735.56	268.86	1129.7	235.9	750.0841699	444.7438999	632.7760017	365.8053055	M8_p20	1.242857143	2.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.191	300	0	0	NA	2qE1	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	1	0.863337596	sgMsh2	cell line
chr2	88412518	88412518	T	C	ENSMUST00000217320.2	5	ENSMUSG00000081836	missense	T/A	47	Olfr1180	ENSMUST00000217320.2:c.139A>G	ENSMUSP00000150965.1:p.Thr47Ala	H-2-Kb	9	6	6	VSITCAQLM	VSITCTQLM	NetMHC	276.27	295.07	1.068	334	0.105	442.624	327.865	0.741	295.07	276.27	679.5	583.1	325.1696473	424.7271271	330.5597718	460.5215948	M8_p20	1.471428571	1.471428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.107	334	0	0	NA	2qD	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	1	0.483649858	sgMsh2	cell line
chr2	117177703	117177703	A	G	ENSMUST00000028829.12	1	ENSMUSG00000027351	missense	I/M	363	Spred1	ENSMUST00000028829.12:c.1089A>G	ENSMUSP00000028829.6:p.Ile363Met	H-2-Kb	9	10	2	CMYQVSCML	CIYQVSCML	SMM	228.618	511.811	2.239	179	0.268	331.205	563.356	1.701	483.81	295.31	614.9	367.1	511.811453	228.6177783	851.6281337	411.386466	M8_p20	0.971428571	0.971428571	TRUE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.263	179	0	0	NA	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr2	85721983	85721983	C	T	ENSMUST00000216443.2	5	ENSMUSG00000043226	missense	R/W	193	Olfr1009	ENSMUST00000216443.2:c.577C>T	ENSMUSP00000150450.1:p.Arg193Trp	H-2-Kb	9	10	2	IWINKLLVF	IRINKLLVF	SMM	261.885	1588.949	6.067	322	0.174	294.855	1805.75	6.124	2022.55	301.14	5543.4	1677.4	1588.949154	261.8846237	1259.650316	288.5692163	M8_p20	1.671428571	1.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.163	322	0	0	NA	2qD	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	1	0.736775017	sgMsh2	cell line
chr2	111379635	111379635	T	C	ENSMUST00000062407.5	5	ENSMUSG00000108931	missense	F/L	212	Olfr1284	ENSMUST00000062407.5:c.634T>C	ENSMUSP00000052153.4:p.Phe212Leu	H-2-Kb	9	5	7	MTLGTFLLL	MTLGTFFLL	NetMHCpan	246.9	192.4	0.779	385	0.213	312.574	264.729	0.847	258.37	322.38	192.4	246.9	271.0878168	302.7680195	408.5545015	416.1500968	M8_p20	2.414285714	2.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.228	385	0	0	NA	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr2	85786374	85786374	T	C	ENSMUST00000215945.1	5	ENSMUSG00000033850	missense	F/L	288	Olfr1015	ENSMUST00000215945.1:c.862T>C	ENSMUSP00000148957.1:p.Phe288Leu	H-2-Kb	9	3	9	IINPLLNPL	IINPLLNPF	NetMHCpan	438.7	1653.4	3.769	264	0.125	476.268	1172.73	2.462	1420.23	481.44	1653.4	438.7	794.5294511	471.0966327	925.2306262	534.872168	M8_p20	0.171428571	1.142857143	FALSE	FALSE	FALSE	0	FALSE	2	Mutect2;Strelka2;MuSe;Vardict	4	0.14	264	0	0	NA	2qD	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	1	0.632812898	sgMsh2	cell line
chr2	87656102	87656102	A	AT	ENSMUST00000135875.3	5	ENSMUSG00000111747	FS	M/NX	273	Olfr1134	ENSMUST00000135875.3:c.817dup	ENSMUSP00000150837.1:p.Met273AsnfsTer23	H-2-Kb	9	20	0	DSYVKPTYL	NA	SMM	254.748	NA	NA	350	0.166	435.96	NA	NA	NA	486.22	NA	545.4	NA	254.7475407	NA	385.7003207	M8_p20	-0.114285714	-0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.156	350	0	0	NA	2qD	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	1	0.705134372	sgMsh2	cell line
chr2	158768178	158768178	C	T	ENSMUST00000029183.2	1	ENSMUSG00000027654	missense	P/L	22	Fam83d	ENSMUST00000029183.2:c.65C>T	ENSMUSP00000029183.2:p.Pro22Leu	H-2-Db	9	8	4	CGPLNPTEL	CGPPNPTEL	NetMHC	65.56	425.32	6.487	24	0.167	216.905	644.766	2.973	425.32	65.56	306.4	93.7	864.2114181	340.1104688	1154.968129	410.7428385	M8_p20	-0.471428571	-0.214285714	TRUE	FALSE	FALSE	1	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.221	24	0	0	NA	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	0.99894036	sgMsh2	cell line
chr2	155834529	155834529	G	A	ENSMUST00000029143.5	1	ENSMUSG00000074647	missense	A/V	107	Fam83c	ENSMUST00000029143.5:c.320C>T	ENSMUSP00000029143.5:p.Ala107Val	H-2-Db	9	9	3	LSVLDVDYM	LSALDVDYM	NetMHC	171.24	976.8	5.704	132	0.288	387.244	1079.403	2.787	976.8	171.24	898	316.8	1182.006868	472.737441	1326.08084	457.6884996	M8_p20	0.828571429	1.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.297	132	0	0	NA	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr2	180583499	180583499	A	G	ENSMUST00000029085.8	1	ENSMUSG00000027569	missense	T/A	83	Mrgbp	ENSMUST00000029085.8:c.247A>G	ENSMUSP00000029085.8:p.Thr83Ala	H-2-Db	9	10	2	SAMYDMQAL	STMYDMQAL	NetMHCpan	338.9	3104.4	9.16	133	0.135	412.293	3121.081	7.57	4556.07	341.95	3104.4	338.9	3137.762006	482.636319	2975.568825	520.6789256	M8_p20	0.157142857	0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.143	133	0	0	NA	2qH4	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	0.646373174	sgMsh2	cell line
chr2	121336461	121336461	T	G	ENSMUST00000052029.9	1	ENSMUSG00000033526	missense	S/R	870	Ppip5k1	ENSMUST00000052029.9:c.2608A>C	ENSMUSP00000057632.3:p.Ser870Arg	H-2-Db	9	11	1	RAISELNYM	SAISELNYM	NetMHCpan	138.7	63.8	0.46	159	0.264	375.561	214.339	0.571	146.47	381.66	63.8	138.7	340.1104688	520.7388744	282.2084413	369.4621898	M8_p20	0.157142857	0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.254	159	0	0	NA	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr3	80860236	80860236	AT	A	ENSMUST00000029654.14	1	ENSMUSG00000028020	FS	I/X	226	Glrb	ENSMUST00000029654.14:c.676del	ENSMUSP00000029654.8:p.Ile226LeufsTer37	H-2-Db	9	20	0	RRISNMATV	NA	SMMPMBEC	200.249	NA	NA	134	0.209	384.587	NA	NA	NA	531.15	NA	1363	NA	238.0235894	NA	200.2488359	M8_p20	1.057142857	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.194	134	0	0	NA	3qE3	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	0.876897873	sgMsh2	cell line
chr2	131274254	131274254	T	C	ENSMUST00000183349.1	3	ENSMUSG00000037514	missense	I/T	24	Pank2	ENSMUST00000183349.1:c.70T>C	ENSMUSP00000139203.1:p.Ile24Thr	H-2-Kb	8	8	4	LSRTFSHL	LSRIFSHL	NetMHC	6.68	6.6	0.988	66	0.303	22.689	20.587	0.907	6.6	6.68	16.3	22.9	26.10597994	24.5323979	24.87367755	22.47708563	M8_p20	-0.485714286	-0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.295	66	0	0	NA	2qF1	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr2	180714861	180714861	A	G	ENSMUST00000078687.5	1	ENSMUSG00000027573	missense	N/S	97	Gid8	ENSMUST00000078687.5:c.290A>G	ENSMUSP00000077753.5:p.Asn97Ser	H-2-Kb	8	11	1	SRYLYFHL	NRYLYFHL	NetMHC	8.14	142.06	17.452	167	0.263	15.146	118.423	7.819	142.06	8.14	235.5	34.2	94.78508415	14.91900983	87.24489012	15.37234066	M8_p20	0.014285714	0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.252	167	0	0	NA	2qH4	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr2	180583499	180583499	A	G	ENSMUST00000029085.8	1	ENSMUSG00000027569	missense	T/A	83	Mrgbp	ENSMUST00000029085.8:c.247A>G	ENSMUSP00000029085.8:p.Thr83Ala	H-2-Kb	8	11	1	AMYDMQAL	TMYDMQAL	NetMHCpan	73.9	56.7	0.767	133	0.135	127.758	106.842	0.836	70.22	74.49	56.7	73.9	143.4630303	181.0256018	185.6692572	236.4503711	M8_p20	0.157142857	0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.143	133	0	0	NA	2qH4	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	0.646373174	sgMsh2	cell line
chr3	55681028	55681028	T	C	ENSMUST00000029374.7	5	ENSMUSG00000027799	missense	Y/C	2430	Nbea	ENSMUST00000029374.7:c.7289A>G	ENSMUSP00000029374.6:p.Tyr2430Cys	H-2-Kb	8	5	7	LIPEFYCL	LIPEFYYL	NetMHC	75.19	21.65	0.288	172	0.198	204.417	65.929	0.323	21.65	75.19	68.8	218.4	63.0579721	192.1940772	78.11600059	216.6406749	M8_p20	1.028571429	1.028571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.225	172	0	0	NA	3qC	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr2	132240580	132240580	A	G	ENSMUST00000110164.7	2	ENSMUSG00000027341	missense	F/S	90	Tmem230	ENSMUST00000110164.7:c.269T>C	ENSMUSP00000105793.1:p.Phe90Ser	H-2-Kb	8	11	1	SLPGFYHL	FLPGFYHL	NetMHCpan	98.2	522.1	5.317	177	0.226	164.475	459.527	2.794	694.44	114.79	522.1	98.2	387.9180607	214.1608096	396.9538331	229.4774419	M8_p20	0.557142857	0.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.231	177	0	0	NA	2qF2	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr3	28794409	28794409	G	A	ENSMUST00000060500.8	1	ENSMUSG00000050192	missense	C/Y	139	Eif5a2	ENSMUST00000060500.8:c.416G>A	ENSMUSP00000050289.7:p.Cys139Tyr	H-2-Kb	8	7	5	VSVMYAMS	VSVMCAMS	SMM	72.734	814.217	11.194	336	0.304	100.979	2855.808	28.281	5114.17	120.91	4897.4	389.8	814.2166892	72.73442335	792.027024	81.04757034	M8_p20	0.985714286	1.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.31	336	0	0	NA	3qA3	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr2	152004194	152004194	T	C	ENSMUST00000073228.11	1	ENSMUSG00000027463	missense	V/A	25	Slc52a3	ENSMUST00000073228.11:c.74T>C	ENSMUSP00000072961.5:p.Val25Ala	H-2-Kb	8	6	6	INGLWAEL	INGLWVEL	SMMPMBEC	144.125	415.662	2.884	39	0.256	176.594	546.352	3.094	646.97	156.97	525.5	212.8	567.204934	196.218522	415.6616909	144.1252256	M8_p20	0.157142857	0.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	39	0	0	NA	2qG3	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr3	36568646	36568646	T	C	ENSMUST00000029270.9	1	ENSMUSG00000027715	missense	M/V	236	Ccna2	ENSMUST00000029270.9:c.706A>G	ENSMUSP00000029270.3:p.Met236Val	H-2-Kb	8	11	1	VSVLRGKL	MSVLRGKL	NetMHC	339.84	1508.2	4.438	112	0.286	353.509	926.72	2.621	1508.2	339.84	837.8	340.8	1015.640475	476.1458462	775.7825382	366.2182643	M8_p20	0.314285714	0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.298	112	0	0	NA	3qB	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr3	88449737	88449737	A	G	ENSMUST00000029700.11	1	ENSMUSG00000028064	missense	L/P	309	Sema4a	ENSMUST00000029700.11:c.926T>C	ENSMUSP00000029700.5:p.Leu309Pro	H-2-Kb	8	5	7	IIRHAVPL	IIRHAVLL	SMM	169.332	448.477	2.649	115	0.174	247.434	538.144	2.175	1021.35	349.03	569.6	310.9	448.476819	169.3323751	506.6872779	183.9670312	M8_p20	0.714285714	0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.169	115	0	0	NA	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	0.763895569	sgMsh2	cell line
chr2	158495606	158495606	C	A	ENSMUST00000109485.8	1	ENSMUSG00000027652	missense	L/I	1496	Ralgapb	ENSMUST00000109485.8:c.4486C>A	ENSMUSP00000105111.2:p.Leu1496Ile	H-2-Kb	8	10	2	AIFQEVGL	ALFQEVGL	SMMPMBEC	137.006	468.533	3.42	119	0.193	277.086	992.844	3.583	2896.55	412.65	1197.3	363.3	788.3879904	190.8710225	468.5328006	137.0061303	M8_p20	1.128571429	1.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.178	119	0	0	NA	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	0.804576399	sgMsh2	cell line
chr3	90190923	90190923	C	T	ENSMUST00000029548.8	5	ENSMUSG00000027939	missense	S/L	1394	Nup210l	ENSMUST00000029548.8:c.4181C>T	ENSMUSP00000029548.4:p.Ser1394Leu	H-2-Kb	8	8	4	RTLLAFPL	RTLSAFPL	NetMHCpan	184	237.9	1.293	199	0.181	202.884	249.781	1.231	490.66	429.13	237.9	184	235.9065504	193.0812048	261.6616044	212.686537	M8_p20	1.957142857	1.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.193	199	0	0	NA	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	0.87237778	sgMsh2	cell line
chr3	68927791	68927791	A	G	ENSMUST00000107812.7	5	ENSMUSG00000027778	missense	I/T	439	Ift80	ENSMUST00000107812.7:c.1316T>C	ENSMUSP00000103442.1:p.Ile439Thr	H-2-Kb	8	11	1	TIFLFEAS	IIFLFEAS	SMM	114.483	40.902	0.357	134	0.269	496.639	214.122	0.431	378.83	1363.31	368.3	827.8	40.90157201	114.482736	59.94321055	165.4778997	M8_p20	1.628571429	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.292	134	0	0	NA	3qE1	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr3	89266743	89266743	T	G	ENSMUST00000107462.7	3	ENSMUSG00000042737	missense	L/V	4	Dpm3	ENSMUST00000107462.7:c.10T>G	ENSMUSP00000103086.1:p.Leu4Val	H-2-Kb	8	4	1	VTQWLWGL	LTQWLWGL	SMM	283.622	1434.63	5.058	66	0.318	404.513	1559.675	3.856	6651.54	1488.78	1453.1	408.4	1434.630303	283.6220554	1666.249377	400.6268017	M8_p20	0.171428571	0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.341	66	0	0	NA	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	2	1	sgMsh2	cell line
chr2	132240580	132240580	A	G	ENSMUST00000110164.7	2	ENSMUSG00000027341	missense	F/S	90	Tmem230	ENSMUST00000110164.7:c.269T>C	ENSMUSP00000105793.1:p.Phe90Ser	H-2-Kb	9	10	2	VSLPGFYHL	VFLPGFYHL	NetMHC	22.77	187.13	8.218	177	0.226	93.901	246.108	2.621	187.13	22.77	200.4	30	291.8166046	157.8010905	341.3893746	169.9221522	M8_p20	0.557142857	0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.231	177	0	0	NA	2qF2	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr2	180714861	180714861	A	G	ENSMUST00000078687.5	1	ENSMUSG00000027573	missense	N/S	97	Gid8	ENSMUST00000078687.5:c.290A>G	ENSMUSP00000077753.5:p.Asn97Ser	H-2-Kb	9	10	2	TSRYLYFHL	TNRYLYFHL	NetMHC	31.73	61.26	1.931	167	0.263	64.842	81.222	1.253	61.26	31.73	45.4	34.6	101.1835704	95.08455975	115.9444594	104.2917608	M8_p20	0.014285714	0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.252	167	0	0	NA	2qH4	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr2	172454295	172454295	T	C	ENSMUST00000099060.1	1	ENSMUSG00000074569	missense	H/R	203	Gcnt7	ENSMUST00000099060.1:c.608A>G	ENSMUSP00000096659.1:p.His203Arg	H-2-Kb	9	8	4	FQWRYVMNL	FQWHYVMNL	NetMHC	44.73	91.86	2.054	116	0.284	378.766	352.119	0.93	91.86	44.73	121.8	74.8	680.9418088	764.0292757	582.4383998	682.7315929	M8_p20	-0.042857143	-0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.269	116	0	0	NA	2qH3	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr2	180583499	180583499	A	G	ENSMUST00000029085.8	1	ENSMUSG00000027569	missense	T/A	83	Mrgbp	ENSMUST00000029085.8:c.247A>G	ENSMUSP00000029085.8:p.Thr83Ala	H-2-Kb	9	4	8	VIWDHLSAM	VIWDHLSTM	NetMHCpan	73.8	57.5	0.779	133	0.135	77.793	86.56	1.113	88.57	75.95	57.5	73.8	84.54929682	79.63610307	91.88613834	85.35913393	M8_p20	-0.128571429	0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.143	133	0	0	NA	2qH4	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	0.646373174	sgMsh2	cell line
chr3	68927791	68927791	A	G	ENSMUST00000107812.7	5	ENSMUSG00000027778	missense	I/T	439	Ift80	ENSMUST00000107812.7:c.1316T>C	ENSMUSP00000103442.1:p.Ile439Thr	H-2-Kb	9	11	1	TIFLFEAST	IIFLFEAST	NetMHC	181.4	78.59	0.433	134	0.269	236.705	140.504	0.594	78.59	181.4	219.4	418.7	139.6722084	239.3922023	141.3350901	234.0183969	M8_p20	0.885714286	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.292	134	0	0	NA	3qE1	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr3	80860236	80860236	AT	A	ENSMUST00000029654.14	1	ENSMUSG00000028020	FS	I/X	226	Glrb	ENSMUST00000029654.14:c.676del	ENSMUSP00000029654.8:p.Ile226LeufsTer37	H-2-Kb	9	6	6	VQLEKLLYL	VQLEKIALP	NetMHC	204.77	13999.81	68.368	134	0.209	281.513	8030.813	28.527	13999.81	204.77	16761.3	288.8	1256.348137	274.2268658	2061.816449	309.2074862	M8_p20	0.928571429	0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.194	134	0	0	NA	3qE3	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	0.876897873	sgMsh2	cell line
chr3	95008482	95008482	T	C	ENSMUST00000019482.7	1	ENSMUSG00000019338	missense	K/R	993	Zfp687	ENSMUST00000019482.7:c.2978A>G	ENSMUSP00000019482.1:p.Lys993Arg	H-2-Kb	9	8	4	SVKRFPCRL	SVKKFPCRL	NetMHCpan	181.6	255.5	1.407	69	0.232	436.752	462.473	1.059	295.28	204.99	255.5	181.6	629.6656471	668.5132201	679.5947262	729.8775406	M8_p20	-0.771428571	-0.185714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.236	69	0	0	NA	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr2	153144474	153144474	G	T	ENSMUST00000003370.13	1	ENSMUSG00000003283	missense	R/M	381	Hck	ENSMUST00000003370.13:c.1142G>T	ENSMUSP00000003370.7:p.Arg381Met	H-2-Kb	9	3	9	RNYIHRDLM	RNYIHRDLR	NetMHCpan	132.5	10091.4	76.162	307	0.244	223.435	6209.322	27.79	9195.72	223.97	10091.4	132.5	2506.744092	222.8999649	3222.923521	238.9186213	M8_p20	-0.328571429	-0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.24	307	0	0	NA	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr3	101056598	101056598	G	A	ENSMUST00000102694.3	1	ENSMUSG00000027864	missense	T/I	566	Ptgfrn	ENSMUST00000102694.3:c.1697C>T	ENSMUSP00000099755.3:p.Thr566Ile	H-2-Db	9	6	6	FAAGNIFEM	FAAGNTFEM	NetMHCpan	22.8	30.9	1.355	100	0.32	52.334	52.974	1.012	32.56	31.28	30.9	22.8	73.38714626	73.38714626	96.06606461	82.52204846	M8_p20	0.514285714	1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.328	100	0	0	NA	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	2	1	sgMsh2	cell line
chr4	45307923	45307923	CT	C	ENSMUST00000044673.8	1	ENSMUSG00000035601	FS	L/X	203	Trmt10b	ENSMUST00000044673.8:c.612del	ENSMUSP00000041052.2:p.Pro205LeufsTer8	H-2-Db	9	9	5	FSLFLWKPL	FSLFPLETL	SMM	212.628	545.281	2.564	347	0.21	281.074	540.89	1.924	345.62	310.63	884.2	463.6	545.2805415	212.6277776	536.5003381	251.518538	M8_p20	1.114285714	1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.21	347	0	0	NA	4qB1	chr4-3184971-97720548	3	2	1	0.9	4.068082914	NA	1	0.949219347	sgMsh2	cell line
chr3	155137385	155137385	AT	A	ENSMUST00000194376.1	1	ENSMUSG00000028182	FS	N/X	298	Lrriq3	ENSMUST00000194376.1:c.897del	ENSMUSP00000142127.1:p.His300ThrfsTer32	H-2-Db	9	7	7	KLWVNFTEV	NA	SMMPMBEC	272.001	NA	NA	219	0.224	443.324	NA	NA	NA	666.64	NA	596.5	NA	290.1482797	NA	272.0006864	M8_p20	0.371428571	0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.237	219	0	0	NA	3qH4	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr3	105005546	105005546	C	A	ENSMUST00000077548.11	1	ENSMUSG00000062127	missense	A/S	341	Cttnbp2nl	ENSMUST00000077548.11:c.1021G>T	ENSMUSP00000076751.5:p.Ala341Ser	H-2-Kb	8	11	1	SAYSYAKA	AAYSYAKA	NetMHC	11.09	24.13	2.176	123	0.333	44.921	75.024	1.67	24.13	11.09	53.5	32.2	129.0446488	68.82401428	96.54727043	57.64212727	M8_p20	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.332	123	0	0	NA	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	2	1	sgMsh2	cell line
chr3	108624645	108624645	A	G	ENSMUST00000051145.14	1	ENSMUSG00000040389	missense	Q/R	449	Wdr47	ENSMUST00000051145.14:c.1346A>G	ENSMUSP00000057482.8:p.Gln449Arg	H-2-Kb	8	11	1	RMYQQMLL	QMYQQMLL	NetMHC	67.4	94.29	1.399	152	0.296	121.812	213.148	1.75	94.29	67.4	182.1	93.4	244.1968177	150.2242346	524.4933667	251.0383085	M8_p20	0.442857143	0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.281	152	0	0	NA	3qF3	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr3	105978389	105978389	T	G	ENSMUST00000000573.8	1	ENSMUSG00000074340	missense	L/R	200	Ovgp1	ENSMUST00000000573.8:c.599T>G	ENSMUSP00000000573.2:p.Leu200Arg	H-2-Kb	8	5	7	TSYDALRL	TSYDALLL	NetMHCpan	51.2	92.7	1.811	154	0.286	65.195	129.261	1.983	119.93	68.34	92.7	51.2	138.5925865	62.04974485	172.480499	72.90209351	M8_p20	-0.1	-0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.306	154	0	0	NA	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr4	45307923	45307923	CT	C	ENSMUST00000044673.8	1	ENSMUSG00000035601	FS	L/X	203	Trmt10b	ENSMUST00000044673.8:c.612del	ENSMUSP00000041052.2:p.Pro205LeufsTer8	H-2-Kb	8	10	4	SLFLWKPL	SLFPLETL	NetMHCpan	45.9	278.7	6.072	347	0.21	65.889	861.472	13.075	1564.85	78.53	278.7	45.9	803.0452175	78.47656766	919.8986892	53.30156983	M8_p20	1.114285714	1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.21	347	0	0	NA	4qB1	chr4-3184971-97720548	3	2	1	0.9	4.068082914	NA	1	0.949219347	sgMsh2	cell line
chr3	105981256	105981256	CA	C	ENSMUST00000000573.8	1	ENSMUSG00000074340	FS	A/X	309	Ovgp1	ENSMUST00000000573.8:c.933del	ENSMUSP00000000573.2:p.Lys311AsnfsTer34	H-2-Kb	8	18	0	INMSRMLL	NA	NetMHCpan	51.6	NA	NA	206	0.286	273.609	NA	NA	NA	89.35	NA	51.6	NA	526.9143181	NA	457.867692	M8_p20	0.371428571	0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.295	206	0	0	NA	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr3	103761538	103761538	T	C	ENSMUST00000118317.7	1	ENSMUSG00000008730	missense	N/S	514	Hipk1	ENSMUST00000118317.7:c.1541A>G	ENSMUSP00000113998.1:p.Asn514Ser	H-2-Kb	8	10	2	LSHQFVTM	LNHQFVTM	NetMHCpan	56.5	91.4	1.618	137	0.328	126.528	289.923	2.291	248.15	93.93	91.4	56.5	381.7156799	206.414404	331.6958211	159.1255801	M8_p20	0.1	0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.318	137	0	0	NA	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	2	1	sgMsh2	cell line
chr4	115068554	115068554	TC	T	ENSMUST00000030489.8	1	ENSMUSG00000028717	FS	I/X	273	Tal1	ENSMUST00000030489.8:c.824del	ENSMUSP00000030489.2:p.Pro275LeufsTer82	H-2-Kb	8	77	0	QAGAFRPL	NA	NetMHC	137.79	NA	NA	34	0.176	228.578	NA	NA	NA	137.79	NA	588.8	NA	207.8452003	NA	249.310173	M8_p20	0.528571429	0.528571429	TRUE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1765	34	0	0	NA	4qD1	chr4-97782511-145315362	3	2	1	0.9	4.068082914	NA	1	0.79779626	sgMsh2	cell line
chr3	105981256	105981256	CA	C	ENSMUST00000000573.8	1	ENSMUSG00000074340	FS	A/X	309	Ovgp1	ENSMUST00000000573.8:c.933del	ENSMUSP00000000573.2:p.Lys311AsnfsTer34	H-2-Kb	8	29	0	SGLAMMTL	NA	NetMHC	176.11	NA	NA	206	0.286	291.397	NA	NA	NA	176.11	NA	308.8	NA	273.9933359	NA	352.1599796	M8_p20	1.728571429	1.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.295	206	0	0	NA	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr3	146584619	146584619	A	C	ENSMUST00000200633.1	1	ENSMUSG00000028185	missense	L/R	199	Dnase2b	ENSMUST00000200633.1:c.596T>G	ENSMUSP00000142872.1:p.Leu199Arg	H-2-Kb	8	5	7	STFHWKRI	STFHWKLI	SMMPMBEC	144.457	341.775	2.366	119	0.21	192.819	354.532	1.839	367.29	243.23	186.2	161.9	499.7352678	223.738128	341.7747702	144.4574685	M8_p20	-0.842857143	-0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	119	0	0	NA	3qH2	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr4	32773266	32773266	C	T	ENSMUST00000178134.1	5	ENSMUSG00000058006	missense	A/V	5475	Mdn1	ENSMUST00000178134.1:c.16424C>T	ENSMUSP00000136222.1:p.Ala5475Val	H-2-Kb	8	6	6	VSPETVQL	VSPETAQL	NetMHC	311.52	71.04	0.228	75	0.227	356.667	123.529	0.346	71.04	311.52	285.5	583	122.1068422	352.9717922	124.9510759	360.3628392	M8_p20	-0.3	-0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	75	0	0	NA	4qA5	chr4-3184971-97720548	3	2	1	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr4	20064005	20064005	A	C	ENSMUST00000098242.3	1	ENSMUSG00000073987	missense	K/T	234	Ggh	ENSMUST00000098242.3:c.701A>C	ENSMUSP00000095843.3:p.Lys234Thr	H-2-Kb	8	10	2	FTYPVYAV	FKYPVYAV	SMM	232.135	1272.741	5.483	144	0.236	311.21	3820.621	12.277	5414.14	319.82	5562.8	302.6	1272.740898	232.1346655	2227.101447	387.9180607	M8_p20	0.757142857	0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.247	144	0	0	NA	4qA3	chr4-3184971-97720548	3	2	1	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr4	53083890	53083890	A	G	ENSMUST00000030010.3	1	ENSMUSG00000015243	missense	W/R	648	Abca1	ENSMUST00000030010.3:c.1942T>C	ENSMUSP00000030010.3:p.Trp648Arg	H-2-Kb	8	11	1	RIYSVAVI	WIYSVAVI	SMM	334.765	451.586	1.349	73	0.205	400.859	795.858	1.985	1140.13	619.27	1407.1	446.3	451.5855118	334.7649647	409.0157201	355.4184757	M8_p20	2.442857143	2.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.234	73	0	0	NA	4qB2	chr4-3184971-97720548	3	2	1	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr3	108427274	108427274	T	C	ENSMUST00000102625.10	1	ENSMUSG00000068739	missense	E/G	482	Sars	ENSMUST00000102625.10:c.1445A>G	ENSMUSP00000099685.4:p.Glu482Gly	H-2-Kb	8	10	2	RGFMPPGL	REFMPPGL	NetMHCpan	383.8	7709.2	20.087	56	0.214	469.11	4903.442	10.453	11274.09	661.3	7709.2	383.8	2097.683683	475.0507412	1975.786438	463.16955	M8_p20	0.642857143	0.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.243	56	0	0	NA	3qF3	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr4	41093679	41093679	A	G	ENSMUST00000055327.7	1	ENSMUSG00000028435	missense	V/A	245	Aqp3	ENSMUST00000055327.7:c.734T>C	ENSMUSP00000055110.7:p.Val245Ala	H-2-Kb	8	6	6	RHWWWAPI	RHWWWVPI	NetMHCpan	222.3	379.8	1.709	32	0.188	438.129	1265.319	2.888	2567.84	683.29	379.8	222.3	1512.655393	523.2870654	1017.981768	352.9717922	M8_p20	-0.171428571	-0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.291	32	0	0	NA	4qA5	chr4-3184971-97720548	3	2	1	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr4	104679526	104679526	GA	G	ENSMUST00000106830.8	1	ENSMUSG00000028519	FS	E/X	171	Dab1	ENSMUST00000106830.8:c.518del	ENSMUSP00000102443.2:p.Lys173ArgfsTer68	H-2-Kb	9	57	0	RTFTRFPPA	NA	NetMHCpan	78.3	NA	NA	80	0.263	222.469	NA	NA	NA	135.73	NA	78.3	NA	419.8653158	NA	309.2074862	M8_p20	-0.142857143	-0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.239	80	0	0	NA	4qC6	chr4-97782511-145315362	3	2	1	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr3	157312902	157312902	C	T	ENSMUST00000074015.10	1	ENSMUSG00000040037	missense	L/F	347	Negr1	ENSMUST00000074015.10:c.1039C>T	ENSMUSP00000073664.4:p.Leu347Phe	H-2-Kb	9	12	9	IFYLKNAIF	IFYLKNAIL	SMM	146.592	86.918	0.593	139	0.302	161.23	88.179	0.547	89.44	172.75	131.7	353.4	86.91805512	146.5919088	86.54659777	149.7097207	M8_p20	0.6	0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.31	139	0	0	NA	3qH4	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr4	45307923	45307923	CT	C	ENSMUST00000044673.8	1	ENSMUSG00000035601	FS	L/X	203	Trmt10b	ENSMUST00000044673.8:c.612del	ENSMUSP00000041052.2:p.Pro205LeufsTer8	H-2-Kb	9	9	5	FSLFLWKPL	FSLFPLETL	NetMHCpan	127.2	1483.2	11.66	347	0.21	215.539	984.497	4.568	761.94	209.13	1483.2	127.2	889.4263671	253.577082	1079.567993	221.9473684	M8_p20	1.114285714	1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.21	347	0	0	NA	4qB1	chr4-3184971-97720548	3	2	1	0.9	4.068082914	NA	1	0.949219347	sgMsh2	cell line
chr3	155137385	155137385	AT	A	ENSMUST00000194376.1	1	ENSMUSG00000028182	FS	N/X	298	Lrriq3	ENSMUST00000194376.1:c.897del	ENSMUSP00000142127.1:p.His300ThrfsTer32	H-2-Kb	9	21	0	LTFHQYKGI	NA	NetMHCpan	249.3	NA	NA	219	0.224	334.616	NA	NA	NA	317.47	NA	249.3	NA	377.6678362	NA	351.7628732	M8_p20	-0.714285714	-0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.237	219	0	0	NA	3qH4	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr4	104679526	104679526	GA	G	ENSMUST00000106830.8	1	ENSMUSG00000028519	FS	E/X	171	Dab1	ENSMUST00000106830.8:c.518del	ENSMUSP00000102443.2:p.Lys173ArgfsTer68	H-2-Kb	9	24	0	CTRPFWKRM	NA	NetMHCpan	330.5	NA	NA	80	0.263	394.527	NA	NA	NA	367.25	NA	330.5	NA	421.8033261	NA	629.8686601	M8_p20	-1.528571429	-0.9	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.239	80	0	0	NA	4qC6	chr4-97782511-145315362	3	2	1	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr4	35708322	35708322	G	T	ENSMUST00000164772.7	1	ENSMUSG00000045083	missense	L/M	553	Lingo2	ENSMUST00000164772.7:c.1657C>A	ENSMUSP00000130423.1:p.Leu553Met	H-2-Kb	9	3	9	TAMGCFTFM	TAMGCFTFL	NetMHCpan	240.3	132.2	0.55	164	0.213	352.831	198.935	0.564	148.84	368.18	132.2	240.3	304.1655332	400.0460623	249.0290432	337.4815227	M8_p20	1.542857143	1.542857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.21	164	0	0	NA	4qA5	chr4-3184971-97720548	3	2	1	0.9	4.068082914	NA	1	0.949219347	sgMsh2	cell line
chr4	32712071	32712071	CA	C	ENSMUST00000178134.1	5	ENSMUSG00000058006	FS	Q/X	1863	Mdn1	ENSMUST00000178134.1:c.5591del	ENSMUSP00000136222.1:p.Asn1864IlefsTer30	H-2-Kb	9	6	7	RIFGCQIPL	RIFGCQNPF	NetMHCpan	425.1	1264.4	2.974	61	0.213	456.767	881.369	1.93	975.24	454.22	1264.4	425.1	673.1471323	459.3143352	787.4989801	477.8042407	M8_p20	1.157142857	1.257142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.227	61	0	0	NA	4qA5	chr4-3184971-97720548	3	2	1	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr3	155137385	155137385	AT	A	ENSMUST00000194376.1	1	ENSMUSG00000028182	FS	N/X	298	Lrriq3	ENSMUST00000194376.1:c.897del	ENSMUSP00000142127.1:p.His300ThrfsTer32	H-2-Kb	9	10	4	VNFTEVGWM	NA	SMMPMBEC	346.937	NA	NA	219	0.224	357.03	NA	NA	NA	962.72	NA	361.6	NA	352.4601324	NA	346.9365057	M8_p20	0.485714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.237	219	0	0	NA	3qH4	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr4	136554214	136554214	T	A	ENSMUST00000105847.7	5	ENSMUSG00000036940	missense	K/M	682	Kdm1a	ENSMUST00000105847.7:c.2045A>T	ENSMUSP00000101473.1:p.Lys682Met	H-2-Db	9	6	6	FGNLNMVVL	FGNLNKVVL	NetMHC	15.68	50.61	3.228	110	0.291	76.126	173.018	2.273	50.61	15.68	144.4	54.4	281.5917975	138.8736979	201.6368945	97.8520661	M8_p20	1.557142857	1.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.287	110	0	0	NA	4qD3	chr4-97782511-145315362	3	2	1	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr5	34848948	34848948	T	A	ENSMUST00000080036.2	1	ENSMUSG00000029104	missense	H/Q	1400	Htt	ENSMUST00000080036.2:c.4200T>A	ENSMUSP00000078945.2:p.His1400Gln	H-2-Db	9	8	4	NAIQNHIRL	NAIHNHIRL	NetMHCpan	42.5	130.5	3.071	208	0.197	128.892	250.646	1.945	219.7	50.95	130.5	42.5	281.5917975	206.8330804	333.8643134	252.6794949	M8_p20	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.188	208	0	0	NA	5qB2	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	0.84977732	sgMsh2	cell line
chr4	155268251	155268251	T	G	ENSMUST00000030922.14	1	ENSMUSG00000029053	missense	K/T	473	Prkcz	ENSMUST00000030922.14:c.1418A>C	ENSMUSP00000030922.7:p.Lys473Thr	H-2-Db	9	5	7	FQVILETPI	FQVILEKPI	NetMHC	96.91	1744.74	18.004	171	0.292	220.135	1380.05	6.269	1744.74	96.91	2345.3	278.3	1015.359882	224.7087583	992.1332393	215.5609059	M8_p20	1.6	1.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.282	171	0	0	NA	4qE2	chr4-145892162-156223608	3	2	1	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr5	63806698	63806698	A	T	ENSMUST00000159584.2	1	ENSMUSG00000090061	missense	K/N	1208	Nwd2	ENSMUST00000159584.2:c.3624A>T	ENSMUSP00000124712.1:p.Lys1208Asn	H-2-Db	9	7	5	ILICNALSI	ILICKALSI	NetMHCpan	141.1	7481.9	53.026	224	0.33	238.859	9795.44	41.009	18580.86	208.18	7481.9	141.1	8762.337965	269.537999	10828.54237	322.5299134	M8_p20	1.828571429	2.485714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.326	224	0	0	NA	5qC3.1	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr5	105015021	105015021	GT	G	ENSMUST00000031235.12	5	ENSMUSG00000034438	FS	K/X	502	Gbp8	ENSMUST00000031235.12:c.1506del	ENSMUSP00000031235.6:p.Lys502AsnfsTer33	H-2-Kb	8	24	0	ASFIFSPI	NA	NetMHC	3.58	NA	NA	180	0.15	6.633	NA	NA	NA	3.58	NA	3.7	NA	11.08510982	NA	9.566211974	M8_p20	1.628571429	1.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.15	180	0	0	NA	5qE5	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	0.678013819	sgMsh2	cell line
chr5	57721359	57721359	T	C	ENSMUST00000191837.5	1	ENSMUSG00000029108	missense	L/S	752	Pcdh7	ENSMUST00000191837.5:c.2255T>C	ENSMUSP00000142319.1:p.Leu752Ser	H-2-Kb	8	5	7	RNISYTSL	RNISYTLL	NetMHC	17.31	17.09	0.987	227	0.163	37.571	44.968	1.197	17.09	17.31	18.2	19.2	71.73646964	55.94225905	78.83879904	59.94321055	M8_p20	0.171428571	0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.167	227	0	0	NA	5qC1	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	0.754855385	sgMsh2	cell line
chr5	20886561	20886561	A	G	ENSMUST00000115259.2	1	ENSMUSG00000045435	missense	Y/C	108	Tmem60	ENSMUST00000115259.2:c.323A>G	ENSMUSP00000110914.2:p.Tyr108Cys	H-2-Kb	8	9	3	LSCVFIPL	LSYVFIPL	SMMPMBEC	18.739	1.883	0.1	263	0.255	26.189	2.268	0.087	2.35	26.63	3.4	62.9	2.186452264	25.74779247	1.882521739	18.73872337	M8_p20	2.2	2.2	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.262	263	0	0	NA	5qA3	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr4	144377206	144377206	C	T	ENSMUST00000121109.1	5	ENSMUSG00000073721	missense	V/M	117	Pramef20	ENSMUST00000121109.1:c.349G>A	ENSMUSP00000112488.1:p.Val117Met	H-2-Kb	8	4	8	VGQNYLNM	VGQNYLNV	NetMHC	33.67	39.73	1.18	52	0.077	97.043	102.316	1.054	39.73	33.67	157.2	99.3	84.47729517	94.78508415	120.1544888	129.9391436	M8_p20	-0.928571429	-0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.114	52	0	0	NA	4qE1	chr4-97782511-145315362	3	2	1	0.9	4.068082914	NA	1	0.515290502	sgMsh2	cell line
chr4	155966486	155966486	T	C	ENSMUST00000024338.4	1	ENSMUSG00000023571	missense	M/T	304	C1qtnf12	ENSMUST00000024338.4:c.911T>C	ENSMUSP00000024338.4:p.Met304Thr	H-2-Kb	8	12	6	SSFSGTLL	SSFSGMLL	NetMHCpan	66.9	50.3	0.752	197	0.269	86.988	70.723	0.813	34.09	71	50.3	66.9	95.22259222	121.8260042	91.14650073	102.9769442	M8_p20	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.26	197	0	0	NA	4qE2	chr4-145892162-156223608	3	2	1	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr5	108332781	108332781	A	G	ENSMUST00000119014.7	5	ENSMUSG00000029263	missense	Y/C	477	Pigg	ENSMUST00000119014.7:c.1430A>G	ENSMUSP00000113818.1:p.Tyr477Cys	H-2-Kb	8	6	6	FSLLFCLV	FSLLFYLV	SMM	71.902	52.935	0.736	215	0.172	76.606	57.279	0.748	45.37	73.46	168.1	165.1	52.93464441	71.90183929	61.62259741	79.75170931	M8_p20	2.871428571	2.871428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.172	215	0	0	NA	5qF	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	0.777455846	sgMsh2	cell line
chr4	139640665	139640665	A	G	ENSMUST00000039818.9	1	ENSMUSG00000028737	missense	T/A	306	Aldh4a1	ENSMUST00000039818.9:c.916A>G	ENSMUSP00000043821.9:p.Thr306Ala	H-2-Kb	8	8	4	RFRAFPRL	RFRTFPRL	SMM	54.293	53.179	0.979	37	0.135	87.052	74.246	0.853	78.71	97.59	160.4	151.2	53.17897962	54.29252	69.78145169	76.51384027	M8_p20	0.085714286	0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.159	37	0	0	NA	4qD3	chr4-97782511-145315362	3	2	1	0.9	4.068082914	NA	1	0.718694648	sgMsh2	cell line
chr5	86538011	86538011	T	C	ENSMUST00000116553.8	1	ENSMUSG00000048764	missense	M/V	166	Tmprss11f	ENSMUST00000116553.8:c.496A>G	ENSMUSP00000112252.2:p.Met166Val	H-2-Kb	8	9	3	ISVPSFSL	ISMPSFSL	NetMHCpan	102.9	36.1	0.351	152	0.276	207.483	135.317	0.652	55.98	137.8	36.1	102.9	214.6545013	277.1660292	219.1492557	335.5366776	M8_p20	0.971428571	1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.306	152	0	0	NA	5qE1	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr4	120886945	120886945	C	T	ENSMUST00000071093.8	1	ENSMUSG00000032890	missense	P/L	124	Rims3	ENSMUST00000071093.8:c.371C>T	ENSMUSP00000068178.2:p.Pro124Leu	H-2-Kb	8	7	5	TFIFLTRL	TFIFPTRL	NetMHCpan	49.6	106	2.137	84	0.179	194.02	549.467	2.832	531.73	162.75	106	49.6	567.204934	225.2890066	685.0779666	240.8463117	M8_p20	1.785714286	1.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	84	0	0	NA	4qD2.2	chr4-97782511-145315362	3	2	1	0.9	4.068082914	NA	1	0.904018425	sgMsh2	cell line
chr5	16359028	16359028	T	C	ENSMUST00000039370.13	1	ENSMUSG00000040118	missense	V/A	903	Cacna2d1	ENSMUST00000039370.13:c.2708T>C	ENSMUSP00000049457.7:p.Val903Ala	H-2-Kb	8	4	8	KSYDYQSA	KSYDYQSV	NetMHCpan	154.7	15.4	0.1	110	0.136	204.33	27.778	0.136	12.68	168.92	15.4	154.7	40.15503419	239.7397234	51.49202839	247.5939338	M8_p20	-1.342857143	-1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.143	110	0	0	NA	5qA3	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	0.646373174	sgMsh2	cell line
chr4	155069021	155069021	T	G	ENSMUST00000103180.3	1	ENSMUSG00000029047	missense	I/M	182	Pex10	ENSMUST00000103180.3:c.546T>G	ENSMUSP00000099469.3:p.Ile182Met	H-2-Kb	8	11	1	MHGTFYHL	IHGTFYHL	SMMPMBEC	155.503	71.571	0.46	105	0.362	235.779	80.872	0.343	80.51	309.1	169.9	352	81.23440428	162.4575876	71.57148034	155.5034397	M8_p20	-0.314285714	-0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.369	105	0	0	NA	4qE2	chr4-145892162-156223608	3	2	1	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr4	144373053	144373053	A	T	ENSMUST00000121109.1	5	ENSMUSG00000073721	missense	F/I	381	Pramef20	ENSMUST00000121109.1:c.1141T>A	ENSMUSP00000112488.1:p.Phe381Ile	H-2-Kb	8	11	1	ISFYGNQI	FSFYGNQI	NetMHCpan	98.2	564.6	5.749	206	0.228	328.538	1504.651	4.58	1903.95	319.99	564.6	98.2	1785.418375	523.2870654	1223.883275	337.0854446	M8_p20	-0.314285714	-0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.221	206	0	0	NA	4qE1	chr4-97782511-145315362	3	2	1	0.9	4.068082914	NA	1	0.99894036	sgMsh2	cell line
chr5	34848948	34848948	T	A	ENSMUST00000080036.2	1	ENSMUSG00000029104	missense	H/Q	1400	Htt	ENSMUST00000080036.2:c.4200T>A	ENSMUSP00000078945.2:p.His1400Gln	H-2-Kb	8	9	3	AIQNHIRL	AIHNHIRL	SMM	233.206	203.582	0.873	208	0.197	335.761	210.611	0.627	187.86	352.56	450.7	1017.2	203.5822922	233.2061504	217.6406428	318.9627742	M8_p20	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.188	208	0	0	NA	5qB2	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	0.84977732	sgMsh2	cell line
chr5	3673162	3673162	T	C	ENSMUST00000014673.8	1	ENSMUSG00000014529	missense	I/T	231	Tmbim7	ENSMUST00000014673.8:c.692T>C	ENSMUSP00000014673.2:p.Ile231Thr	H-2-Kb	8	7	5	LIYGTIAL	LIYGIIAL	SMMPMBEC	338.641	366.218	1.081	227	0.198	379.899	400.735	1.055	501.32	404.38	344.3	444	435.2512229	355.4184757	366.2182643	338.6413603	M8_p20	1.742857143	1.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.209	227	0	0	NA	5qA1	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	0.944699254	sgMsh2	cell line
chr5	3673162	3673162	T	C	ENSMUST00000014673.8	1	ENSMUSG00000014529	missense	I/T	231	Tmbim7	ENSMUST00000014673.8:c.692T>C	ENSMUSP00000014673.2:p.Ile231Thr	H-2-Kb	8	5	7	VLLIYGTI	VLLIYGII	NetMHCpan	142	579.7	4.082	227	0.198	310.354	756.542	2.438	1677.7	445.42	579.7	142	772.2181412	337.0854446	740.8665723	283.6220554	M8_p20	2.028571429	2.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.209	227	0	0	NA	5qA1	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	0.944699254	sgMsh2	cell line
chr5	29478259	29478259	T	A	ENSMUST00000165512.3	1	ENSMUSG00000001566	missense	N/I	6	Mnx1	ENSMUST00000165512.3:c.17A>T	ENSMUSP00000129503.2:p.Asn6Ile	H-2-Kb	8	5	2	KIFRIDAL	KNFRIDAL	NetMHCpan	239.7	176.2	0.735	47	0.298	312.442	360.883	1.155	460.29	468.11	176.2	239.7	352.1599796	316.0385059	369.6068402	308.8445912	M8_p20	1.342857143	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.311	47	0	0	NA	5qB1	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr4	155069021	155069021	T	G	ENSMUST00000103180.3	1	ENSMUSG00000029047	missense	I/M	182	Pex10	ENSMUST00000103180.3:c.546T>G	ENSMUSP00000099469.3:p.Ile182Met	H-2-Kb	8	6	6	VAWFYMHG	VAWFYIHG	SMM	88.052	124.377	1.413	105	0.362	255.688	481.612	1.884	1556.42	599.87	818.1	399.5	124.3769779	88.05215715	145.1242539	111.8767908	M8_p20	0.1	0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.369	105	0	0	NA	4qE2	chr4-145892162-156223608	3	2	1	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr5	87694728	87694728	C	T	ENSMUST00000197422.4	1	ENSMUSG00000063157	missense	A/T	147	Csn2	ENSMUST00000197422.4:c.439G>A	ENSMUSP00000143341.1:p.Ala147Thr	H-2-Kb	8	9	3	SLTSLANL	SLASLANL	SMM	381.716	341.775	0.895	112	0.42	487.6	375.638	0.77	720.32	664.91	348.8	569	341.7747702	381.7156799	402.476011	406.2000757	M8_p20	1.171428571	1.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.438	112	0	0	NA	5qE1	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	2	1	sgMsh2	cell line
chr4	143895385	143895385	T	C	ENSMUST00000105767.1	5	ENSMUSG00000078512	missense	I/V	467	Pramef6	ENSMUST00000105767.1:c.1399A>G	ENSMUSP00000101393.1:p.Ile467Val	H-2-Kb	9	13	2	CVYSFVGNI	CIYSFVGNI	NetMHC	23.45	22.06	0.941	216	0.227	90.759	96.799	1.067	22.06	23.45	42.9	35.6	150.6988715	145.9183802	252.4933823	247.8848587	M8_p20	0.785714286	1.6	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.212	216	0	0	NA	4qE1	chr4-97782511-145315362	3	2	1	0.9	4.068082914	NA	1	0.958259531	sgMsh2	cell line
chr4	124942369	124942369	T	C	ENSMUST00000094769.12	1	ENSMUSG00000044730	missense	Y/H	158	9930104L06Rik	ENSMUST00000094769.12:c.472T>C	ENSMUSP00000154851.1:p.Tyr158His	H-2-Kb	9	4	8	SSYLKRKHL	SSYLKRKYL	NetMHC	33.01	28.82	0.873	109	0.266	69.015	66.097	0.958	28.82	33.01	64.1	72.7	68.09418088	65.32960014	84.382036	77.13473645	M8_p20	-1.314285714	-1.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.301	109	0	0	NA	4qD2.2	chr4-97782511-145315362	3	2	1	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr4	120886945	120886945	C	T	ENSMUST00000071093.8	1	ENSMUSG00000032890	missense	P/L	124	Rims3	ENSMUST00000071093.8:c.371C>T	ENSMUSP00000068178.2:p.Pro124Leu	H-2-Kb	9	6	6	GTFIFLTRL	GTFIFPTRL	NetMHCpan	28.1	39.6	1.409	84	0.179	60.436	144.364	2.389	86.31	36.1	39.6	28.1	215.332707	91.43448014	202.4184057	84.77152578	M8_p20	1.785714286	1.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	84	0	0	NA	4qD2.2	chr4-97782511-145315362	3	2	1	0.9	4.068082914	NA	1	0.904018425	sgMsh2	cell line
chr5	101944143	101944143	T	A	ENSMUST00000053177.13	1	ENSMUSG00000043940	missense	K/N	443	Wdfy3	ENSMUST00000053177.13:c.1329A>T	ENSMUSP00000052607.7:p.Lys443Asn	H-2-Kb	9	8	4	VQNNYFEML	VQNKYFEML	NetMHC	62.66	107.77	1.72	130	0.246	165.336	170.625	1.032	107.77	62.66	106.6	107.7	272.3391013	275.4926395	233.4801695	222.9718309	M8_p20	-0.471428571	-0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.241	130	0	0	NA	5qE5	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr5	52848016	52848016	A	G	ENSMUST00000031072.13	1	ENSMUSG00000029176	missense	Q/R	301	Anapc4	ENSMUST00000031072.13:c.902A>G	ENSMUSP00000031072.7:p.Gln301Arg	H-2-Kb	9	9	3	SVRDEFMHL	SVQDEFMHL	NetMHCpan	107.4	185.5	1.727	47	0.213	228.321	411.963	1.804	155.92	116.93	185.5	107.4	638.4251688	339.7113053	843.82036	474.5150595	M8_p20	-0.885714286	-0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	47	0	0	NA	5qC1	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	0.904018425	sgMsh2	cell line
chr4	155069021	155069021	T	G	ENSMUST00000103180.3	1	ENSMUSG00000029047	missense	I/M	182	Pex10	ENSMUST00000103180.3:c.546T>G	ENSMUSP00000099469.3:p.Ile182Met	H-2-Kb	9	10	2	YMHGTFYHL	YIHGTFYHL	NetMHC	159.62	219.23	1.373	105	0.362	188.296	355.71	1.889	219.23	159.62	277.8	182.9	433.6206938	193.6912491	687.4640623	332.0855664	M8_p20	-0.314285714	-0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.369	105	0	0	NA	4qE2	chr4-145892162-156223608	3	2	1	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr4	155069021	155069021	T	G	ENSMUST00000103180.3	1	ENSMUSG00000029047	missense	I/M	182	Pex10	ENSMUST00000103180.3:c.546T>G	ENSMUSP00000099469.3:p.Ile182Met	H-2-Kb	9	7	5	AWFYMHGTF	AWFYIHGTF	SMM	130.05	341.279	2.624	105	0.362	193.94	435.221	2.244	455.25	209.54	926.2	545.8	341.2793414	130.0498932	415.1929781	178.3405083	M8_p20	0.271428571	0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.369	105	0	0	NA	4qE2	chr4-145892162-156223608	3	2	1	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr5	101944090	101944090	T	C	ENSMUST00000053177.13	1	ENSMUSG00000043940	missense	K/R	461	Wdfy3	ENSMUST00000053177.13:c.1382A>G	ENSMUSP00000052607.7:p.Lys461Arg	H-2-Kb	9	5	7	LNYIPCREL	LNYIPCKEL	NetMHCpan	162.8	323.2	1.985	131	0.237	262.115	363.046	1.385	484.84	218.66	323.2	162.8	341.2793414	305.5694975	384.8132346	375.1889162	M8_p20	-0.014285714	-0.014285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.24	131	0	0	NA	5qE5	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr5	105813013	105813013	C	A	ENSMUST00000120847.7	1	ENSMUSG00000046079	missense	L/I	430	Lrrc8d	ENSMUST00000120847.7:c.1288C>A	ENSMUSP00000113603.1:p.Leu430Ile	H-2-Kb	9	10	2	QIYSKRFGV	QLYSKRFGV	SMM	203.287	693.601	3.412	119	0.21	333.589	1059.293	3.175	901.7	246.21	2620.5	1022.6	693.6014622	203.287184	1216.886295	420.9688878	M8_p20	-0.557142857	-0.514285714	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.21	119	0	0	NA	5qE5	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	0.949219347	sgMsh2	cell line
chr4	143895385	143895385	T	C	ENSMUST00000105767.1	5	ENSMUSG00000078512	missense	I/V	467	Pramef6	ENSMUST00000105767.1:c.1399A>G	ENSMUSP00000101393.1:p.Ile467Val	H-2-Kb	9	10	5	RNFCVYSFV	RNFCIYSFV	NetMHCpan	85.7	73	0.852	216	0.227	357.494	308.946	0.864	234.97	248.06	73	85.7	382.9217191	472.1826226	388.3738676	466.9280884	M8_p20	2.057142857	2.057142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.212	216	0	0	NA	4qE1	chr4-97782511-145315362	3	2	1	0.9	4.068082914	NA	1	0.958259531	sgMsh2	cell line
chr5	3673162	3673162	T	C	ENSMUST00000014673.8	1	ENSMUSG00000014529	missense	I/T	231	Tmbim7	ENSMUST00000014673.8:c.692T>C	ENSMUSP00000014673.2:p.Ile231Thr	H-2-Kb	9	7	5	LIYGTIALV	LIYGIIALV	NetMHC	255.57	661.63	2.589	227	0.198	399.072	568.543	1.425	661.63	255.57	1069.9	902.4	475.4556362	346.02701	472.3348608	452.1161284	M8_p20	1.7	1.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.209	227	0	0	NA	5qA1	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	0.944699254	sgMsh2	cell line
chr5	29478259	29478259	T	A	ENSMUST00000165512.3	1	ENSMUSG00000001566	missense	N/I	6	Mnx1	ENSMUST00000165512.3:c.17A>T	ENSMUSP00000129503.2:p.Asn6Ile	H-2-Kb	9	5	2	KIFRIDALL	KNFRIDALL	NetMHC	294.87	154.93	0.525	47	0.298	482.133	349.528	0.725	154.93	294.87	223.6	334.6	475.4556362	629.6656471	486.6872848	649.007925	M8_p20	1.242857143	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.311	47	0	0	NA	5qB1	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr4	144377206	144377206	C	T	ENSMUST00000121109.1	5	ENSMUSG00000073721	missense	V/M	117	Pramef20	ENSMUST00000121109.1:c.349G>A	ENSMUSP00000112488.1:p.Val117Met	H-2-Kb	9	3	9	SVGQNYLNM	SVGQNYLNV	NetMHC	302.63	406.24	1.342	52	0.077	468.582	787.381	1.68	406.24	302.63	1416.5	771.7	783.6280984	458.2579416	791.1339102	478.9056933	M8_p20	-0.928571429	-0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.114	52	0	0	NA	4qE1	chr4-97782511-145315362	3	2	1	0.9	4.068082914	NA	1	0.515290502	sgMsh2	cell line
chr5	16359028	16359028	T	C	ENSMUST00000039370.13	1	ENSMUSG00000040118	missense	V/A	903	Cacna2d1	ENSMUST00000039370.13:c.2708T>C	ENSMUSP00000049457.7:p.Val903Ala	H-2-Kb	9	4	8	KSYDYQSAC	KSYDYQSVC	NetMHCpan	276.2	497	1.799	110	0.136	416.065	787.162	1.892	922.32	305.81	497	276.2	924.9324152	656.3114787	652.0036095	526.3201534	M8_p20	-0.871428571	-0.871428571	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.143	110	0	0	NA	5qA3	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	0.646373174	sgMsh2	cell line
chr4	139640665	139640665	A	G	ENSMUST00000039818.9	1	ENSMUSG00000028737	missense	T/A	306	Aldh4a1	ENSMUST00000039818.9:c.916A>G	ENSMUSP00000043821.9:p.Thr306Ala	H-2-Kb	9	4	8	QNLDRFRAF	QNLDRFRTF	SMM	226.001	239.944	1.062	37	0.135	312.457	354.948	1.136	385.37	323.44	1098.6	1301.5	239.9440583	226.0008122	324.526376	301.4740949	M8_p20	-0.185714286	-0.185714286	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.159	37	0	0	NA	4qD3	chr4-97782511-145315362	3	2	1	0.9	4.068082914	NA	1	0.718694648	sgMsh2	cell line
chr5	105015021	105015021	GT	G	ENSMUST00000031235.12	5	ENSMUSG00000034438	FS	K/X	502	Gbp8	ENSMUST00000031235.12:c.1506del	ENSMUSP00000031235.6:p.Lys502AsnfsTer33	H-2-Kb	9	23	0	VASFIFSPI	NA	NetMHCpan	98.9	NA	NA	180	0.15	387.939	NA	NA	NA	383.91	NA	98.9	NA	443.7210173	NA	391.9674468	M8_p20	1.628571429	2.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.15	180	0	0	NA	5qE5	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	0.678013819	sgMsh2	cell line
chr5	3673162	3673162	T	C	ENSMUST00000014673.8	1	ENSMUSG00000014529	missense	I/T	231	Tmbim7	ENSMUST00000014673.8:c.692T>C	ENSMUSP00000014673.2:p.Ile231Thr	H-2-Kb	9	4	8	SVLLIYGTI	SVLLIYGII	NetMHCpan	276.2	1014.9	3.675	227	0.198	446.055	804.767	1.804	1087.34	388.32	1014.9	276.2	565.0800826	505.9527957	594.6343592	503.7905305	M8_p20	2.028571429	2.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.209	227	0	0	NA	5qA1	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	0.944699254	sgMsh2	cell line
chr4	155069021	155069021	T	G	ENSMUST00000103180.3	1	ENSMUSG00000029047	missense	I/M	182	Pex10	ENSMUST00000103180.3:c.546T>G	ENSMUSP00000099469.3:p.Ile182Met	H-2-Kb	9	6	6	VAWFYMHGT	VAWFYIHGT	SMMPMBEC	296.654	386.589	1.303	105	0.362	366.731	465.832	1.27	684.88	393.67	468.1	352.3	463.5643185	381.1623536	386.5894518	296.6538575	M8_p20	-0.257142857	0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.369	105	0	0	NA	4qE2	chr4-145892162-156223608	3	2	1	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr5	57721359	57721359	T	C	ENSMUST00000191837.5	1	ENSMUSG00000029108	missense	L/S	752	Pcdh7	ENSMUST00000191837.5:c.2255T>C	ENSMUSP00000142319.1:p.Leu752Ser	H-2-Kb	9	7	5	ISYTSLPPS	ISYTLLPPS	SMM	151.743	109.172	0.719	227	0.163	424.609	273.635	0.644	451.89	632.75	392.3	624.7	109.1716816	151.7434661	154.9708446	224.5173978	M8_p20	-0.428571429	0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.167	227	0	0	NA	5qC1	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	0.754855385	sgMsh2	cell line
chr5	31040436	31040436	T	C	ENSMUST00000114668.6	1	ENSMUSG00000006641	missense	I/V	310	Slc5a6	ENSMUST00000114668.6:c.928A>G	ENSMUSP00000110316.1:p.Ile310Val	H-2-Kb	9	11	1	VGLVMFAYY	IGLVMFAYY	SMM	176.242	259.484	1.472	107	0.318	453.049	578.617	1.277	846.6	671.54	1237.9	1273.8	259.483651	176.2422384	310.6347231	234.557865	M8_p20	1.7	2.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.29	107	0	0	NA	5qB1	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr6	57600007	57600007	T	C	ENSMUST00000031817.9	1	ENSMUSG00000029798	missense	L/P	235	Herc6	ENSMUST00000031817.9:c.704T>C	ENSMUSP00000031817.8:p.Leu235Pro	H-2-Db	9	6	6	GALKNPSVI	GALKNLSVI	NetMHC	13.46	7.99	0.594	240	0.108	47.099	27.26	0.579	7.99	13.46	16.8	37.5	48.2636319	70.24574131	37.71985373	56.6982951	M8_p20	0.385714286	0.385714286	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.11	240	0	0	NA	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.497210134	sgMsh2	cell line
chr6	42286884	42286884	TG	T	ENSMUST00000031894.12	1	ENSMUSG00000029862	FS	G/X	40	Clcn1	ENSMUST00000031894.12:c.122del	ENSMUSP00000031894.6:p.Gly41AlafsTer70	H-2-Db	9	65	0	TTILNVKTV	NA	NetMHCpan	370.5	NA	NA	66	0.136	457.664	NA	NA	NA	742.55	NA	370.5	NA	495.0168702	NA	420.3102682	M8_p20	1.228571429	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.157	66	0	0	NA	6qB2.1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.709654464	sgMsh2	cell line
chr6	13193189	13193189	T	C	ENSMUST00000054530.6	1	ENSMUSG00000079679	missense	T/A	384	Vwde	ENSMUST00000054530.6:c.1150A>G	ENSMUSP00000058110.5:p.Thr384Ala	H-2-Kb	8	6	6	AVLYYAAV	AVLYYTAV	NetMHC	18.5	70.64	3.818	203	0.128	51.667	133.063	2.575	70.64	18.5	72.6	37	198.0341096	69.30107956	193.5263029	66.33458249	M8_p20	1.885714286	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.133	203	0	0	NA	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.601172253	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	8	4	8	VLVSYTRL	VLVSYTRI	NetMHC	19.39	171.38	8.839	144	0.167	31.763	209.772	6.604	171.38	19.39	99.5	20.3	348.1288376	53.67103866	248.1646968	43.22549746	M8_p20	0.642857143	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.198	144	0	0	NA	6qB2.1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.894978241	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	8	6	6	VSYTRLLV	VSYTRILV	NetMHCpan	35.2	39.9	1.134	144	0.167	94.957	84.621	0.891	32.04	39.69	39.9	35.2	129.3421274	150.2242346	135.1263357	158.7596015	M8_p20	0.642857143	0.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.198	144	0	0	NA	6qB2.1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.894978241	sgMsh2	cell line
chr5	138178383	138178383	T	G	ENSMUST00000019662.10	1	ENSMUSG00000019518	missense	L/R	415	Ap4m1	ENSMUST00000019662.10:c.1244T>G	ENSMUSP00000019662.4:p.Leu415Arg	H-2-Kb	8	11	1	RQVRFLRL	LQVRFLRL	NetMHC	71.37	78.51	1.1	76	0.224	93.035	90.625	0.974	78.51	71.37	51	85.9	129.6402918	108.5775406	102.7401038	100.1705365	M8_p20	0.3	0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.235	76	0	0	NA	5qG2	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr5	110277756	110277756	A	G	ENSMUST00000031472.11	1	ENSMUSG00000029499	missense	F/L	138	Pxmp2	ENSMUST00000031472.11:c.412T>C	ENSMUSP00000031472.5:p.Phe138Leu	H-2-Kb	8	8	4	VSVLVAKM	VSVFVAKM	NetMHC	116.68	141.33	1.211	148	0.23	223.541	229.414	1.026	141.33	116.68	47.9	183	323.3999884	288.2305431	317.4972734	264.0827294	M8_p20	1.6	1.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.211	148	0	0	NA	5qF	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	0.953739439	sgMsh2	cell line
chr6	35270381	35270381	A	G	ENSMUST00000031868.4	1	ENSMUSG00000029843	missense	I/T	568	Slc13a4	ENSMUST00000031868.4:c.1703T>C	ENSMUSP00000031868.4:p.Ile568Thr	H-2-Kb	8	11	1	TVFSYGHC	IVFSYGHC	SMMPMBEC	126.398	45.787	0.362	182	0.137	145.752	48.403	0.332	38.66	171.24	51.8	148.7	51.01994663	142.8038776	45.7867692	126.3979412	M8_p20	0.542857143	0.542857143	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.144	182	0	0	NA	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.650893266	sgMsh2	cell line
chr6	30815960	30815960	A	G	ENSMUST00000048774.12	1	ENSMUSG00000025607	missense	V/A	480	Copg2	ENSMUST00000048774.12:c.1439T>C	ENSMUSP00000038368.6:p.Val480Ala	H-2-Kb	8	6	6	FIFNRAVL	FIFNRVVL	SMM	138.912	401.55	2.891	183	0.104	159.887	404.813	2.532	524.31	178.28	359.2	181.6	401.5503419	138.9120754	408.0750101	141.4946437	M8_p20	1.3	1.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.115	183	0	0	NA	6qA3.3	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.519810595	sgMsh2	cell line
chr6	42286884	42286884	TG	T	ENSMUST00000031894.12	1	ENSMUSG00000029862	FS	G/X	40	Clcn1	ENSMUST00000031894.12:c.122del	ENSMUSP00000031894.6:p.Gly41AlafsTer70	H-2-Kb	8	28	0	TQHRYMAI	NA	NetMHC	259.42	NA	NA	66	0.136	338.138	NA	NA	NA	259.42	NA	273.8	NA	443.3431473	NA	402.476011	M8_p20	-0.614285714	-0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.157	66	0	0	NA	6qB2.1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.709654464	sgMsh2	cell line
chr6	18405230	18405230	T	C	ENSMUST00000090601.11	1	ENSMUSG00000000416	missense	Y/C	1090	Cttnbp2	ENSMUST00000090601.11:c.3269A>G	ENSMUSP00000088089.5:p.Tyr1090Cys	H-2-Kb	8	7	5	SSVTCASM	SSVTYASM	NetMHC	276.55	6.31	0.023	533	0.141	362.299	24.523	0.068	6.31	276.55	15.8	475.5	35.70590129	399.7053856	33.24604589	324.8927349	M8_p20	1.157142857	1.157142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.138	533	0	0	NA	6qA2	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.623772713	sgMsh2	cell line
chr5	123758488	123758488	A	G	ENSMUST00000031366.11	1	ENSMUSG00000029414	missense	N/D	138	Kntc1	ENSMUST00000031366.11:c.412A>G	ENSMUSP00000031366.7:p.Asn138Asp	H-2-Kb	8	5	7	SQRTYRDL	SQRTYRNL	SMM	239.74	37.217	0.155	177	0.446	352.064	42.914	0.122	25.66	412.56	218.3	1756.2	37.21688324	239.7397234	48.61160944	291.5680954	M8_p20	-2.028571429	-2.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.426	177	0	0	NA	5qF	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	2	1	sgMsh2	cell line
chr6	56753863	56753863	CA	C	ENSMUST00000031805.10	1	ENSMUSG00000029787	FS	K/X	591	Avl9	ENSMUST00000031805.10:c.1777del	ENSMUSP00000031805.8:p.Ile593LeufsTer72	H-2-Kb	8	59	0	RVFLSHPM	NA	NetMHCpan	148.9	NA	NA	195	0.195	437.401	NA	NA	NA	454.09	NA	148.9	NA	426.324214	NA	448.476819	M8_p20	1.014285714	1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.181	195	0	0	NA	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.818136675	sgMsh2	cell line
chr6	38395159	38395159	A	G	ENSMUST00000162554.7	1	ENSMUSG00000056832	missense	N/S	228	Ttc26	ENSMUST00000162554.7:c.683A>G	ENSMUSP00000124369.1:p.Asn228Ser	H-2-Kb	8	8	4	KACSHFRL	KACNHFRL	SMMPMBEC	238.089	262.869	1.104	291	0.203	424.535	436.945	1.029	611.02	603.18	792.8	636.8	253.9451951	245.8895091	262.8693795	238.0893668	M8_p20	0.342857143	0.342857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.199	291	0	0	NA	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.899498333	sgMsh2	cell line
chr6	30815960	30815960	A	G	ENSMUST00000048774.12	1	ENSMUSG00000025607	missense	V/A	480	Copg2	ENSMUST00000048774.12:c.1439T>C	ENSMUSP00000038368.6:p.Val480Ala	H-2-Kb	8	4	8	IRFIFNRA	IRFIFNRV	SMMPMBEC	232.135	48.277	0.208	183	0.104	482.306	47.673	0.099	40.71	683.59	149.1	1240.7	47.06954498	281.0217928	48.27696948	232.1346655	M8_p20	-0.085714286	0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.115	183	0	0	NA	6qA3.3	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.519810595	sgMsh2	cell line
chr6	13193189	13193189	T	C	ENSMUST00000054530.6	1	ENSMUSG00000079679	missense	T/A	384	Vwde	ENSMUST00000054530.6:c.1150A>G	ENSMUSP00000058110.5:p.Thr384Ala	H-2-Kb	9	5	7	QAVLYYAAV	QAVLYYTAV	NetMHC	15.98	41.44	2.593	203	0.128	75.31	108.396	1.439	41.44	15.98	80.3	48.5	136.4928808	102.1198104	174.2809827	128.0117987	M8_p20	1.885714286	1.885714286	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.133	203	0	0	NA	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.601172253	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	9	3	9	LVLVSYTRL	LVLVSYTRI	NetMHC	46.33	202.94	4.38	144	0.167	99.281	285.444	2.875	202.94	46.33	207.6	48.9	371.6293451	149.6614677	363.2871195	157.1267038	M8_p20	0.642857143	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.198	144	0	0	NA	6qB2.1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.894978241	sgMsh2	cell line
chr6	41394716	41394716	A	G	ENSMUST00000049079.8	1	ENSMUSG00000058119	missense	N/S	32	Gm5771	ENSMUST00000049079.8:c.95A>G	ENSMUSP00000039684.7:p.Asn32Ser	H-2-Kb	9	11	1	SSVPYQVSL	NSVPYQVSL	NetMHCpan	55	427.2	7.767	749	0.174	192.657	1089.876	5.657	863.77	57.03	427.2	55	1486.312054	344.4371603	1315.982154	328.2842143	M8_p20	0.714285714	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.177	749	0	0	NA	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.800056306	sgMsh2	cell line
chr5	136012389	136012389	A	G	ENSMUST00000111142.8	1	ENSMUSG00000004947	missense	H/R	216	Dtx2	ENSMUST00000111142.8:c.647A>G	ENSMUSP00000106772.2:p.His216Arg	H-2-Kb	9	5	7	VSGRYRRSM	VSGRYRHSM	NetMHC	126.92	219.53	1.73	137	0.109	380.787	348.038	0.914	219.53	126.92	353.9	562.6	361.5014137	382.0410236	342.1763584	379.5333991	M8_p20	-2.014285714	-1.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.125	137	0	0	NA	5qG2	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	0.565011516	sgMsh2	cell line
chr6	56753863	56753863	CA	C	ENSMUST00000031805.10	1	ENSMUSG00000029787	FS	K/X	591	Avl9	ENSMUST00000031805.10:c.1777del	ENSMUSP00000031805.8:p.Ile593LeufsTer72	H-2-Kb	9	15	0	VSWSQPAGM	NA	NetMHC	162.72	NA	NA	195	0.195	210.1	NA	NA	NA	162.72	NA	194.2	NA	226.0008122	NA	332.8511027	M8_p20	-0.5	-0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.181	195	0	0	NA	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.818136675	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	9	4	8	VLVSYTRLL	VLVSYTRIL	NetMHCpan	118.1	254.3	2.153	144	0.167	338.726	712.479	2.103	683.46	204.18	254.3	118.1	741.4980274	473.271116	959.9530659	622.6586131	M8_p20	0.642857143	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.198	144	0	0	NA	6qB2.1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.894978241	sgMsh2	cell line
chr5	137758482	137758482	TG	T	ENSMUST00000110985.1	2	ENSMUSG00000029723	FS	L/X	57	Tsc22d4	ENSMUST00000110985.1:c.177del	ENSMUSP00000106613.1:p.Pro60GlnfsTer18	H-2-Kb	9	22	0	VGWTKAFSL	NA	NetMHCpan	103.3	NA	NA	26	0.577	321.493	NA	NA	NA	216.16	NA	103.3	NA	472.1826226	NA	426.8251484	M8_p20	0.3	0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.571	26	0	0	NA	5qG2	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	2	1	sgMsh2	cell line
chr6	57258876	57258876	T	C	ENSMUST00000228297.1	NA	ENSMUSG00000115199	missense	V/A	243	Vmn1r15	ENSMUST00000228297.1:c.728T>C	ENSMUSP00000154252.1:p.Val243Ala	H-2-Kb	9	5	7	FVVMYWADF	FVVMYWVDF	NetMHC	306.14	761.72	2.488	385	0.2	379.005	706.007	1.863	761.72	306.14	3331.3	836.6	650.2943789	450.9309038	416.1500968	307.0789168	M8_p20	0.714285714	1.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.204	385	0	0	NA	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.922098794	sgMsh2	cell line
chr6	56753863	56753863	CA	C	ENSMUST00000031805.10	1	ENSMUSG00000029787	FS	K/X	591	Avl9	ENSMUST00000031805.10:c.1777del	ENSMUSP00000031805.8:p.Ile593LeufsTer72	H-2-Kb	9	23	0	MWYKQEKPL	NA	SMM	105.465	NA	NA	195	0.195	251.939	NA	NA	NA	309.23	NA	916.8	NA	105.465399	NA	194.6480243	M8_p20	-1.985714286	-1.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.181	195	0	0	NA	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.818136675	sgMsh2	cell line
chr5	147315169	147315169	T	C	ENSMUST00000100433.4	1	ENSMUSG00000075543	missense	S/G	158	Urad	ENSMUST00000100433.4:c.472A>G	ENSMUSP00000098000.3:p.Ser158Gly	H-2-Kb	9	10	2	IGHLRLTDL	ISHLRLTDL	NetMHC	322.75	98.24	0.304	52	0.327	388.562	137.299	0.353	98.24	322.75	151.5	451.1	159.261206	457.2039776	123.0977174	326.0243217	M8_p20	-0.071428571	0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.285	52	0	0	NA	5qG3	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr6	42286884	42286884	TG	T	ENSMUST00000031894.12	1	ENSMUSG00000029862	FS	G/X	40	Clcn1	ENSMUST00000031894.12:c.122del	ENSMUSP00000031894.6:p.Gly41AlafsTer70	H-2-Kb	9	60	0	TAWMRTTIL	NA	NetMHCpan	157.5	NA	NA	66	0.136	221.615	NA	NA	NA	328.86	NA	157.5	NA	251.2522734	NA	191.9773533	M8_p20	0.485714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.157	66	0	0	NA	6qB2.1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.709654464	sgMsh2	cell line
chr6	57258876	57258876	T	C	ENSMUST00000228297.1	NA	ENSMUSG00000115199	missense	V/A	243	Vmn1r15	ENSMUST00000228297.1:c.728T>C	ENSMUSP00000154252.1:p.Val243Ala	H-2-Kb	9	7	5	VMYWADFII	VMYWVDFII	SMM	154.565	218.328	1.413	385	0.2	312.379	430.03	1.377	602.28	395.01	1029	537.3	218.3282833	154.5645878	257.7804634	229.7470798	M8_p20	1.128571429	1.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.204	385	0	0	NA	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.922098794	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	9	6	6	VSYTRLLVA	VSYTRILVA	NetMHCpan	129.9	163.6	1.259	144	0.167	176.155	270.535	1.536	712.71	415.25	163.6	129.9	323.6756285	203.287184	217.3952246	149.021867	M8_p20	1.014285714	1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.198	144	0	0	NA	6qB2.1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.894978241	sgMsh2	cell line
chr6	71561046	71561046	T	A	ENSMUST00000059462.11	1	ENSMUSG00000053119	missense	S/T	86	Chmp3	ENSMUST00000059462.11:c.256T>A	ENSMUSP00000109815.3:p.Ser86Thr	H-2-Db	9	6	6	KAHMNTVLM	KAHMNSVLM	NetMHC	11.45	15.11	1.32	174	0.161	33.494	42.425	1.267	15.11	11.45	17.3	16.1	67.54916735	50.88854105	87.41178724	72.70595779	M8_p20	0.628571429	0.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.173	174	0	0	NA	6qC1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.781975938	sgMsh2	cell line
chr6	107567567	107567567	A	G	ENSMUST00000049285.9	1	ENSMUSG00000034648	missense	N/D	109	Lrrn1	ENSMUST00000049285.9:c.325A>G	ENSMUSP00000037096.8:p.Asn109Asp	H-2-Db	9	4	8	FSQNNFTDI	FSQNNFTNI	NetMHC	98.08	74.23	0.757	135	0.222	115.299	90.521	0.785	74.23	98.08	73.3	114.3	106.8119884	136.3389673	112.3492041	116.2973985	M8_p20	-1.057142857	-0.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.225	135	0	0	NA	6qE1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	2	1	sgMsh2	cell line
chr6	134451069	134451069	T	C	ENSMUST00000032322.14	1	ENSMUSG00000030201	missense	Y/C	1520	Lrp6	ENSMUST00000032322.14:c.4559A>G	ENSMUSP00000032322.8:p.Tyr1520Cys	H-2-Kb	8	4	8	RSYSYRPC	RSYSYRPY	NetMHC	22.95	107.06	4.665	104	0.192	38.31	109.727	2.864	107.06	22.95	418.8	63.3	112.3931906	35.05419514	72.90209351	41.56616909	M8_p20	-1.114285714	-1.114285714	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.188	104	0	0	NA	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.84977732	sgMsh2	cell line
chr7	6461136	6461136	T	C	ENSMUST00000214301.2	5	ENSMUSG00000048620	missense	V/A	209	Olfr1336	ENSMUST00000214301.2:c.626T>C	ENSMUSP00000150162.1:p.Val209Ala	H-2-Kb	8	10	2	IAILWGSL	IVILWGSL	NetMHCpan	26.7	38.1	1.427	374	0.241	48.129	52.985	1.101	49.64	35.34	38.1	26.7	82.36448742	81.04757034	56.33003227	60.91720937	M8_p20	1.685714286	1.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.249	374	0	0	NA	7qA1	chr7-3489139-7214089	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr6	141532679	141532679	A	G	ENSMUST00000032362.11	1	ENSMUSG00000030235	missense	K/R	56	Slco1c1	ENSMUST00000032362.11:c.167A>G	ENSMUSP00000032362.9:p.Lys56Arg	H-2-Kb	8	4	8	LSFVYFAR	LSFVYFAK	NetMHC	71.6	273.33	3.817	139	0.115	97.337	165.283	1.698	273.33	71.6	241.7	126.8	88.86689373	86.84403626	56.4598864	107.830098	M8_p20	0.714285714	1.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.13	139	0	0	NA	6qG2	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.587611976	sgMsh2	cell line
chr6	114302629	114302629	A	G	ENSMUST00000032454.7	1	ENSMUSG00000030310	missense	K/R	123	Slc6a1	ENSMUST00000032454.7:c.368A>G	ENSMUSP00000032454.5:p.Lys123Arg	H-2-Kb	8	6	6	LAPMFRGV	LAPMFKGV	NetMHC	85.05	307.58	3.616	135	0.163	326.028	633.35	1.943	307.58	85.05	408.2	184.6	1126.522836	545.4312289	858.499408	467.4552051	M8_p20	0.6	0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.172	135	0	0	NA	6qE3	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.777455846	sgMsh2	cell line
chr7	12305079	12305079	CG	C	ENSMUST00000072801.4	NA	ENSMUSG00000058132	FS	R/X	92	Vmn1r82	ENSMUST00000072801.4:c.280del	ENSMUSP00000072580.3:p.Val94PhefsTer9	H-2-Kb	8	9	5	VSRGFHYI	VSRGVSLY	NetMHCpan	78.6	15100.7	192.121	164	0.244	97.996	15009.855	153.168	22427.51	95.59	15100.7	78.6	14919.00983	100.4014535	12126.62646	110.3417837	M8_p20	-0.414285714	-0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.266	164	0	0	NA	7qA1	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr6	141532679	141532679	A	G	ENSMUST00000032362.11	1	ENSMUSG00000030235	missense	K/R	56	Slco1c1	ENSMUST00000032362.11:c.167A>G	ENSMUSP00000032362.9:p.Lys56Arg	H-2-Kb	8	5	7	SFVYFARA	SFVYFAKA	NetMHC	104.42	421.4	4.036	139	0.115	172.62	538.576	3.12	421.4	104.42	215.7	105.5	804.8964279	281.6696149	655.752568	239.7397234	M8_p20	1.085714286	1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.13	139	0	0	NA	6qG2	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.587611976	sgMsh2	cell line
chr6	141532679	141532679	A	G	ENSMUST00000032362.11	1	ENSMUSG00000030235	missense	K/R	56	Slco1c1	ENSMUST00000032362.11:c.167A>G	ENSMUSP00000032362.9:p.Lys56Arg	H-2-Kb	8	6	6	FVYFARAL	FVYFAKAL	NetMHCpan	53.9	100.9	1.872	139	0.115	100.957	211.274	2.093	281	106.91	100.9	53.9	196.218522	95.00358634	226.3288934	123.2366829	M8_p20	1.228571429	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.13	139	0	0	NA	6qG2	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.587611976	sgMsh2	cell line
chr6	124908510	124908510	CG	C	ENSMUST00000032217.1	1	ENSMUSG00000030124	FS	P/X	302	Lag3	ENSMUST00000032217.1:c.906del	ENSMUSP00000032217.1:p.Val303TrpfsTer45	H-2-Kb	8	16	0	VAILPFTL	NA	NetMHC	108.05	NA	NA	81	0.099	209.178	NA	NA	NA	108.05	NA	108.8	NA	309.5565516	NA	376.4783444	M8_p20	2.057142857	2.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.097	81	0	0	NA	6qF2	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.438448936	sgMsh2	cell line
chr7	4469203	4469203	GA	G	ENSMUST00000163893.7	1	ENSMUSG00000006154	FS	R/X	22	Eps8l1	ENSMUST00000163893.7:c.69del	ENSMUSP00000125840.1:p.Lys23AsnfsTer56	H-2-Kb	8	6	7	SIYEQRNV	SIYEQRKR	SMM	80.305	2021.808	25.177	249	0.221	140.518	10629.403	75.645	16431.11	121.91	19443.2	292.4	2021.808416	80.30452175	4827.696948	159.1255801	M8_p20	-1.085714286	-1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.218	249	0	0	NA	7qA1	chr7-3489139-7214089	4	2	2	0.9	4.068082914	NA	1	0.985380084	sgMsh2	cell line
chr6	134451076	134451076	T	C	ENSMUST00000032322.14	1	ENSMUSG00000030201	missense	R/G	1518	Lrp6	ENSMUST00000032322.14:c.4552A>G	ENSMUSP00000032322.8:p.Arg1518Gly	H-2-Kb	8	6	6	RSYSYGPY	RSYSYRPY	SMMPMBEC	72.902	72.902	1	99	0.202	122.156	109.727	0.898	107.06	123.88	418.8	436.7	112.3931906	120.4314735	72.90209351	72.90209351	M8_p20	-1.071428571	-1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.191	99	0	0	NA	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.863337596	sgMsh2	cell line
chr6	134451069	134451069	T	C	ENSMUST00000032322.14	1	ENSMUSG00000030201	missense	Y/C	1520	Lrp6	ENSMUST00000032322.14:c.4559A>G	ENSMUSP00000032322.8:p.Tyr1520Cys	H-2-Kb	8	11	1	CSYRHFAP	YSYRHFAP	NetMHC	134.9	77.72	0.576	104	0.192	195.012	134.543	0.69	77.72	134.9	80.4	161.6	188.68614	228.4230889	247.5939338	382.5956254	M8_p20	-0.971428571	-0.385714286	TRUE	FALSE	TRUE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.188	104	0	0	NA	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.84977732	sgMsh2	cell line
chr6	116702006	116702006	GC	G	ENSMUST00000056623.12	1	ENSMUSG00000048108	FS	G/X	36	Tmem72	ENSMUST00000056623.12:c.108del	ENSMUSP00000057942.6:p.Arg37GlyfsTer77	H-2-Kb	8	80	0	STLSWSGM	NA	NetMHC	165.56	NA	NA	81	0.099	251.323	NA	NA	NA	165.56	NA	224.2	NA	308.8445912	NA	278.4453695	M8_p20	0.3	0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.128	81	0	0	NA	6qE3	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.578571792	sgMsh2	cell line
chr7	6060603	6060603	CT	C	ENSMUST00000037728.12	1	ENSMUSG00000034690	FS	S/X	3	Nlrp4c	ENSMUST00000037728.12:c.16del	ENSMUSP00000046503.5:p.Ser6LeufsTer9	H-2-Kb	8	3	4	SFFLILAL	SFFSDFGL	SMM	135.438	160.968	1.189	103	0.272	183.537	318.439	1.735	494.24	221.95	462.4	223.8	160.9681675	135.4378341	174.4777291	145.1242539	M8_p20	3.328571429	3.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.255	103	0	0	NA	7qA1	chr7-3489139-7214089	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr6	123815817	123815817	T	C	ENSMUST00000075095.6	5	ENSMUSG00000072780	missense	M/T	701	Vmn2r24	ENSMUST00000075095.6:c.2102T>C	ENSMUSP00000074602.5:p.Met701Thr	H-2-Kb	8	6	6	QMWMVTRL	QMWMVMRL	NetMHC	249.67	165.69	0.664	855	0.156	456.149	439.641	0.964	165.69	249.67	358.4	310.1	520.8827797	666.4076901	533.0156983	602.1989584	M8_p20	0.814285714	0.814285714	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.157	855	0	0	NA	6qF2	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.709654464	sgMsh2	cell line
chr6	69283934	69283934	TA	T	ENSMUST00000103349.1	NA	ENSMUSG00000076548	FS	Y/X	70	Igkv4-69	ENSMUST00000103349.1:c.208del	ENSMUSP00000100150.1:p.Tyr70MetfsTer26	H-2-Kb	8	25	0	VAVGLGPL	NA	NetMHC	277.12	NA	NA	652	0.138	319.498	NA	NA	NA	277.12	NA	307.3	NA	344.9371732	NA	331.6958211	M8_p20	1.6	1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.138	652	0	0	NA	6qC1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.623772713	sgMsh2	cell line
chr6	125980155	125980155	A	G	ENSMUST00000160496.7	1	ENSMUSG00000038115	missense	K/R	629	Ano2	ENSMUST00000160496.7:c.1886A>G	ENSMUSP00000125303.1:p.Lys629Arg	H-2-Kb	8	6	6	KAFLLRFV	KAFLLKFV	NetMHCpan	272.4	547.6	2.01	352	0.131	351.17	682.716	1.944	1229.78	480.77	547.6	272.4	681.9303192	330.1718172	683.502331	372.1688324	M8_p20	2.1	2.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.137	352	0	0	NA	6qF3	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.619252621	sgMsh2	cell line
chr6	72515320	72515320	A	G	ENSMUST00000162561.8	1	ENSMUSG00000052631	missense	V/A	181	Sh2d6	ENSMUST00000162561.8:c.542T>C	ENSMUSP00000124673.2:p.Val181Ala	H-2-Kb	8	5	7	QPFTLAAL	QPFTLAVL	SMM	136.691	321.914	2.355	85	0.176	392.013	1659.23	4.233	2868.95	584.16	4165.5	2841.1	321.9141004	136.691025	449.5106648	199.8664966	M8_p20	1.671428571	1.671428571	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.164	85	0	0	NA	6qC1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.741295109	sgMsh2	cell line
chr7	13028552	13028552	C	A	ENSMUST00000005705.7	1	ENSMUSG00000005566	missense	L/M	368	Trim28	ENSMUST00000005705.7:c.1102C>A	ENSMUSP00000005705.7:p.Leu368Met	H-2-Kb	8	9	3	KKMIYFQL	KKLIYFQL	SMMPMBEC	242.516	183.967	0.759	75	0.413	424.719	506.319	1.192	828.67	832.15	1033.4	533.4	183.9670312	316.0385059	183.9670312	242.5157786	M8_p20	0.614285714	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.444	75	0	0	NA	7qA1	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	2	1	sgMsh2	cell line
chr6	138012108	138012108	T	C	ENSMUST00000171804.3	5	ENSMUSG00000044378	missense	M/V	471	Slc15a5	ENSMUST00000171804.3:c.1411A>G	ENSMUSP00000129239.1:p.Met471Val	H-2-Kb	8	11	1	VLIKLLYL	MLIKLLYL	NetMHCpan	299.3	988.8	3.304	116	0.138	448.284	990.661	2.21	3059.52	851.35	988.8	299.3	992.5216755	465.3074435	913.5661511	431.2608157	M8_p20	2.071428571	2.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.162	116	0	0	NA	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.732254925	sgMsh2	cell line
chr6	124908510	124908510	CG	C	ENSMUST00000032217.1	1	ENSMUSG00000030124	FS	P/X	302	Lag3	ENSMUST00000032217.1:c.906del	ENSMUSP00000032217.1:p.Val303TrpfsTer45	H-2-Kb	8	24	0	RLWVWHRL	NA	SMMPMBEC	207.367	NA	NA	81	0.099	336.204	NA	NA	NA	1111.14	NA	304.5	NA	367.908651	NA	207.3671696	M8_p20	0.328571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.097	81	0	0	NA	6qF2	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.438448936	sgMsh2	cell line
chr6	141532679	141532679	A	G	ENSMUST00000032362.11	1	ENSMUSG00000030235	missense	K/R	56	Slco1c1	ENSMUST00000032362.11:c.167A>G	ENSMUSP00000032362.9:p.Lys56Arg	H-2-Kb	9	4	8	LSFVYFARA	LSFVYFAKA	NetMHC	8.07	18.23	2.259	139	0.115	41.355	63.038	1.524	18.23	8.07	19.6	12.2	162.2220929	88.94263671	106.4755765	70.50988397	M8_p20	1.085714286	1.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.13	139	0	0	NA	6qG2	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.587611976	sgMsh2	cell line
chr6	134520435	134520435	A	C	ENSMUST00000032322.14	1	ENSMUSG00000030201	missense	L/R	203	Lrp6	ENSMUST00000032322.14:c.608T>G	ENSMUSP00000032322.8:p.Leu203Arg	H-2-Kb	9	11	1	RNFIHKSNL	LNFIHKSNL	NetMHCpan	24.8	15.1	0.609	262	0.206	96.035	60.832	0.633	39.77	43.78	15.1	24.8	87.5205423	148.2893631	81.893607	152.4930322	M8_p20	-0.042857143	-0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.201	262	0	0	NA	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.908538517	sgMsh2	cell line
chr7	6461136	6461136	T	C	ENSMUST00000214301.2	5	ENSMUSG00000048620	missense	V/A	209	Olfr1336	ENSMUST00000214301.2:c.626T>C	ENSMUSP00000150162.1:p.Val209Ala	H-2-Kb	9	10	2	IAILWGSLL	IVILWGSLL	NetMHC	79.58	110.35	1.387	374	0.241	134.3	179.951	1.34	110.35	79.58	151.4	83.2	208.5018919	185.4001153	225.0349638	194.6480243	M8_p20	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.249	374	0	0	NA	7qA1	chr7-3489139-7214089	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr6	124908510	124908510	CG	C	ENSMUST00000032217.1	1	ENSMUSG00000030124	FS	P/X	302	Lag3	ENSMUST00000032217.1:c.906del	ENSMUSP00000032217.1:p.Val303TrpfsTer45	H-2-Kb	9	17	0	AILPFTLRL	NA	NetMHCpan	45.3	NA	NA	81	0.099	185.425	NA	NA	NA	88.29	NA	45.3	NA	282.5595563	NA	326.7758854	M8_p20	1.057142857	2.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.097	81	0	0	NA	6qF2	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.438448936	sgMsh2	cell line
chr6	141532679	141532679	A	G	ENSMUST00000032362.11	1	ENSMUSG00000030235	missense	K/R	56	Slco1c1	ENSMUST00000032362.11:c.167A>G	ENSMUSP00000032362.9:p.Lys56Arg	H-2-Kb	9	5	7	SFVYFARAL	SFVYFAKAL	NetMHC	90.76	210.98	2.325	139	0.115	303.576	377.92	1.245	210.98	90.76	211.2	119.5	544.6405843	487.6519891	802.1396792	782.0778752	M8_p20	1.228571429	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.13	139	0	0	NA	6qG2	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.587611976	sgMsh2	cell line
chr6	134451069	134451069	T	C	ENSMUST00000032322.14	1	ENSMUSG00000030201	missense	Y/C	1520	Lrp6	ENSMUST00000032322.14:c.4559A>G	ENSMUSP00000032322.8:p.Tyr1520Cys	H-2-Kb	9	11	1	CSYRHFAPP	YSYRHFAPP	SMM	43.965	47.985	1.091	104	0.192	101.949	75.581	0.741	74.91	111.8	101.8	153.6	47.9854973	43.96529586	76.25178243	92.09795777	M8_p20	-1.085714286	-0.385714286	TRUE	FALSE	TRUE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.188	104	0	0	NA	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.84977732	sgMsh2	cell line
chr7	6060603	6060603	CT	C	ENSMUST00000037728.12	1	ENSMUSG00000034690	FS	S/X	3	Nlrp4c	ENSMUST00000037728.12:c.16del	ENSMUSP00000046503.5:p.Ser6LeufsTer9	H-2-Kb	9	2	5	ASFFLILAL	ASFFSDFGL	NetMHCpan	78.3	395.6	5.052	103	0.272	198.358	362.658	1.828	371.93	201.17	395.6	78.3	334.2796971	224.9624328	353.3865369	195.5464788	M8_p20	3.328571429	3.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.255	103	0	0	NA	7qA1	chr7-3489139-7214089	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr6	108399280	108399280	C	T	ENSMUST00000032192.8	1	ENSMUSG00000030102	missense	R/W	1235	Itpr1	ENSMUST00000032192.8:c.3703C>T	ENSMUSP00000032192.6:p.Arg1235Trp	H-2-Kb	9	9	3	IMWLAHEFL	IMRLAHEFL	NetMHCpan	173.3	364.8	2.105	156	0.122	275.443	622.207	2.259	738.74	227.21	364.8	173.3	566.3827268	323.6756285	678.0317017	326.7758854	M8_p20	0.657142857	0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.138	156	0	0	NA	6qE1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.623772713	sgMsh2	cell line
chr6	108380923	108380923	A	T	ENSMUST00000032192.8	1	ENSMUSG00000030102	missense	K/M	521	Itpr1	ENSMUST00000032192.8:c.1562A>T	ENSMUSP00000032192.6:p.Lys521Met	H-2-Kb	9	9	3	IFMLLQAPF	IFKLLQAPF	NetMHC	243.96	1098.72	4.504	90	0.178	381.453	1088.97	2.855	1098.72	243.96	1897.8	649.4	1079.220037	368.2222268	940.2644145	394.6844353	M8_p20	1.285714286	2.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.203	90	0	0	NA	6qE1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.917578702	sgMsh2	cell line
chr6	138012108	138012108	T	C	ENSMUST00000171804.3	5	ENSMUSG00000044378	missense	M/V	471	Slc15a5	ENSMUST00000171804.3:c.1411A>G	ENSMUSP00000129239.1:p.Met471Val	H-2-Kb	9	10	2	AVLIKLLYL	AMLIKLLYL	NetMHC	295.04	180.53	0.612	116	0.138	309.178	165.465	0.535	180.53	295.04	481.5	592	144.2480663	312.6871254	150.4007493	305.6680173	M8_p20	2.071428571	2.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.162	116	0	0	NA	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.732254925	sgMsh2	cell line
chr6	134484391	134484391	T	G	ENSMUST00000032322.14	1	ENSMUSG00000030201	missense	E/A	701	Lrp6	ENSMUST00000032322.14:c.2102A>C	ENSMUSP00000032322.8:p.Glu701Ala	H-2-Kb	9	4	8	SALEHVVAF	SALEHVVEF	NetMHC	346.5	552.55	1.595	226	0.088	444.167	549.223	1.237	552.55	346.5	572.2	399.4	545.8961105	515.3591605	539.8212792	488.9337312	M8_p20	1.442857143	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.103	226	0	0	NA	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.465569489	sgMsh2	cell line
chr6	123815817	123815817	T	C	ENSMUST00000075095.6	5	ENSMUSG00000072780	missense	M/T	701	Vmn2r24	ENSMUST00000075095.6:c.2102T>C	ENSMUSP00000074602.5:p.Met701Thr	H-2-Kb	9	8	4	WMVTRLSNV	WMVMRLSNV	SMMPMBEC	371.749	308.496	0.83	855	0.156	393.346	326.071	0.829	273.51	374.49	1055.2	1159.9	343.6449768	412.2019102	308.4963287	371.7491635	M8_p20	0.385714286	0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.157	855	0	0	NA	6qF2	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.709654464	sgMsh2	cell line
chr6	113578387	113578387	T	A	ENSMUST00000036340.11	1	ENSMUSG00000034023	missense	F/Y	1119	Fancd2	ENSMUST00000036340.11:c.3356T>A	ENSMUSP00000045667.5:p.Phe1119Tyr	H-2-Kb	9	3	9	QSFSYLQNY	QSFSYLQNF	SMM	108.67	62.389	0.574	174	0.213	297.381	61.045	0.205	32.08	374.85	59.7	1857.1	62.38928378	108.6700833	111.2371876	219.9125427	M8_p20	-0.542857143	-0.471428571	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.195	174	0	0	NA	6qE3	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.881417965	sgMsh2	cell line
chr6	125626311	125626311	T	C	ENSMUST00000112254.7	1	ENSMUSG00000001930	missense	Y/H	875	Vwf	ENSMUST00000112254.7:c.2623T>C	ENSMUSP00000107873.2:p.Tyr875His	H-2-Kb	9	6	6	IGMAHHLTF	IGMAHYLTF	NetMHCpan	161.7	47.4	0.293	177	0.158	471.923	149.13	0.316	143.29	449.25	47.4	161.7	187.1156015	654.8020042	154.9708446	494.595317	M8_p20	0.457142857	0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.166	177	0	0	NA	6qF3	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.750335293	sgMsh2	cell line
chr7	18680927	18680927	G	T	ENSMUST00000076677.3	5	ENSMUSG00000063305	missense	L/M	348	Psg20	ENSMUST00000076677.3:c.1042C>A	ENSMUSP00000075973.3:p.Leu348Met	H-2-Db	9	3	9	TGYTNGSLM	TGYTNGSLL	NetMHC	92.93	152.55	1.642	381	0.226	221.381	267.482	1.208	152.55	92.93	208.7	192.4	408.9027205	288.150913	326.2646338	250.3629153	M8_p20	-0.142857143	-0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.245	381	0	0	NA	7qA3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr7	81101095	81101095	T	C	ENSMUST00000107348.1	1	ENSMUSG00000038763	missense	W/R	1538	Alpk3	ENSMUST00000107348.1:c.4612T>C	ENSMUSP00000102971.1:p.Trp1538Arg	H-2-Db	9	9	3	YQRTNGSFL	YQWTNGSFL	NetMHCpan	123.2	26.5	0.215	91	0.275	312.704	56.356	0.18	8.22	131.53	26.5	123.2	91.33137583	493.878363	86.21245256	572.2291797	M8_p20	-0.471428571	-0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.268	91	0	0	NA	7qD3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr7	26611187	26611187	T	C	ENSMUST00000228367.1	NA	ENSMUSG00000091924	missense	M/V	298	Vmn1r185	ENSMUST00000228367.1:c.892A>G	ENSMUSP00000154816.1:p.Met298Val	H-2-Db	9	8	4	YSLVSRFNL	YSLMSRFNL	NetMHC	136.82	215.91	1.578	202	0.248	299.155	452.516	1.513	215.91	136.82	303	280.9	602.0325877	317.4095578	657.007005	372.8807814	M8_p20	0.828571429	0.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.242	202	0	0	NA	7qA3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr7	103716732	103716732	T	C	ENSMUST00000215723.1	5	ENSMUSG00000094822	missense	L/P	46	Olfr243	ENSMUST00000215723.1:c.137T>C	ENSMUSP00000150329.1:p.Leu46Pro	H-2-Db	9	4	8	IALLGNSPL	IALLGNSLL	SMMPMBEC	407.915	1353.848	3.319	354	0.212	440.737	2105.688	4.778	4762.52	745.91	2832.2	453.3	1379.176981	428.173712	1353.848288	407.9153047	M8_p20	0.728571429	1.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.221	354	0	0	NA	7qE3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	0.99894036	sgMsh2	cell line
chr7	56729649	56729649	G	A	ENSMUST00000068911.12	1	ENSMUSG00000055026	missense	A/V	335	Gabrg3	ENSMUST00000068911.12:c.1004C>T	ENSMUSP00000067632.6:p.Ala335Val	H-2-Db	9	5	7	AALMEYVTL	AALMEYATL	NetMHCpan	283.9	270.3	0.952	142	0.232	427.473	344.761	0.807	972.38	905.9	270.3	283.9	407.9622703	519.5412082	281.5593799	335.4053611	M8_p20	1.171428571	1.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.213	142	0	0	NA	7qB5	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	0.962779623	sgMsh2	cell line
chr7	25272796	25272796	A	G	ENSMUST00000169266.7	1	ENSMUSG00000005442	missense	I/V	651	Cic	ENSMUST00000169266.7:c.1951A>G	ENSMUSP00000132351.1:p.Ile651Val	H-2-Db	10	2	10	FSPINASPVV	FSPINASPVI	NetMHC	14.9	8.41	0.564	41	0.122	465.206	229.143	0.493	8.41	14.9	34.4	92.4	423.8869047	838.0115415	542.8376978	1013.141255	M8_p20	1.257142857	1.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.178	41	0	0	NA	7qA3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	0.804576399	sgMsh2	cell line
chr7	66784798	66784798	T	C	ENSMUST00000066475.10	1	ENSMUSG00000030510	missense	W/R	216	Cers3	ENSMUST00000066475.10:c.646T>C	ENSMUSP00000069238.8:p.Trp216Arg	H-2-Kb	8	8	4	SQYRYYIL	SQYWYYIL	NetMHC	4.27	6.01	1.407	438	0.231	11.074	15.356	1.387	6.01	4.27	10.4	7.4	20.3114066	14.74823333	31.82291802	20.73671696	M8_p20	-0.514285714	-0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.233	438	0	0	NA	7qC	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr7	99667112	99667112	T	C	ENSMUST00000107088.7	1	ENSMUSG00000030737	missense	T/A	404	Slco2b1	ENSMUST00000107088.7:c.1210A>G	ENSMUSP00000102703.1:p.Thr404Ala	H-2-Kb	8	10	2	IAASFANM	ITASFANM	NetMHC	5.86	5.92	1.01	73	0.233	17.404	13.8	0.793	5.92	5.86	10.9	9	16.70090478	25.80714726	19.75786438	31.24208431	M8_p20	0.828571429	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.265	73	0	0	NA	7qE1	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr7	19643130	19643130	A	C	ENSMUST00000055242.10	1	ENSMUSG00000002981	missense	F/V	170	Clptm1	ENSMUST00000055242.10:c.508T>G	ENSMUSP00000051293.9:p.Phe170Val	H-2-Kb	8	4	8	SIYIHVYV	SIYIHVYF	NetMHC	15.47	62.57	4.045	128	0.328	41.881	121.629	2.904	62.57	15.47	80.8	57.4	162.4575876	35.70590129	166.6249377	48.05515695	M8_p20	1.657142857	1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.304	128	0	0	NA	7qA3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr7	108066532	108066532	T	C	ENSMUST00000071658.2	NA	ENSMUSG00000063120	missense	M/V	89	Olfr480	ENSMUST00000071658.2:c.265A>G	ENSMUSP00000071583.2:p.Met89Val	H-2-Kb	8	11	1	VYLFLSHL	MYLFLSHL	NetMHCpan	13.1	28.9	2.206	256	0.242	134.327	287.934	2.144	52.58	23.33	28.9	13.1	523.2870654	245.323979	556.8522772	262.8693795	M8_p20	1.271428571	1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.235	256	0	0	NA	7qE3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr7	28320255	28320255	A	G	ENSMUST00000209141.1	1	ENSMUSG00000003435	missense	F/L	497	Supt5	ENSMUST00000209141.1:c.1489T>C	ENSMUSP00000147164.1:p.Phe497Leu	H-2-Kb	8	11	1	LVILFSDL	FVILFSDL	NetMHCpan	33.8	63.7	1.885	138	0.13	68.106	75.272	1.105	40.58	34.18	63.7	33.8	93.70008827	130.2386842	86.84403626	102.0328459	M8_p20	2.114285714	2.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.146	138	0	0	NA	7qA3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	0.65993345	sgMsh2	cell line
chr7	108031681	108031681	A	G	ENSMUST00000210173.2	3	ENSMUSG00000094426	missense	Y/H	221	Olfr478	ENSMUST00000210173.2:c.661T>C	ENSMUSP00000147713.1:p.Tyr221His	H-2-Kb	8	9	3	ISHIYILI	ISYIYILI	NetMHCpan	32.1	7	0.218	574	0.254	78.835	8.59	0.109	4.24	53.98	7	32.1	10.56185011	124.3769779	10.17981768	103.6907462	M8_p20	1.714285714	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.257	574	0	0	NA	7qE3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr7	62419972	62419972	TC	T	ENSMUST00000094340.3	NA	ENSMUSG00000070527	FS	E/X	24	Mkrn3	ENSMUST00000094340.3:c.70del	ENSMUSP00000091898.3:p.Glu24ArgfsTer36	H-2-Kb	8	11	1	RVCLFPPL	NA	SMMPMBEC	44.951	NA	NA	13	0.538	58.684	NA	NA	NA	65.4	NA	82.2	NA	51.96847826	NA	44.95106648	M8_p20	1.985714286	1.985714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.513	13	0	0	NA	7qC	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	2	1	sgMsh2	cell line
chr7	102927910	102927910	T	A	ENSMUST00000215782.2	5	ENSMUSG00000073963	missense	I/N	94	Olfr572	ENSMUST00000215782.2:c.281T>A	ENSMUSP00000149174.1:p.Ile94Asn	H-2-Kb	8	6	6	FNYKFNTF	FNYKFITF	NetMHCpan	50.8	48.2	0.949	240	0.263	130.321	119.91	0.92	86.45	77.52	48.2	50.8	158.0301673	183.1217795	153.3698525	187.8192059	M8_p20	-1.042857143	-1.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.261	240	0	0	NA	7qE3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr7	105555462	105555462	AC	A	ENSMUST00000046983.9	1	ENSMUSG00000037049	FS	P/X	183	Smpd1	ENSMUST00000046983.9:c.551del	ENSMUSP00000042187.8:p.Pro184GlnfsTer72	H-2-Kb	8	47	0	VQIHFAAA	NA	SMMPMBEC	150.918	NA	NA	119	0.277	175.233	NA	NA	NA	165.65	NA	488.7	NA	184.8161845	NA	150.9176382	M8_p20	0.857142857	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.27	119	0	0	NA	7qE3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr7	44943424	44943424	G	GA	ENSMUST00000120929.8	1	ENSMUSG00000059891	FS	-/X	47-48	Tsks	ENSMUST00000120929.8:c.149dup	ENSMUSP00000112673.1:p.Lys51GlufsTer76	H-2-Kb	8	77	0	TCFPYNTL	NA	NetMHCpan	52.5	NA	NA	28	0.214	118.718	NA	NA	NA	187.11	NA	52.5	NA	125.8171954	NA	111.6194813	M8_p20	0.285714286	0.285714286	FALSE	FALSE	FALSE	1	FALSE	0	Strelka2;Vardict	2	0.2143	28	0	0	NA	7qB3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	0.968655743	sgMsh2	cell line
chr7	108031681	108031681	A	G	ENSMUST00000210173.2	3	ENSMUSG00000094426	missense	Y/H	221	Olfr478	ENSMUST00000210173.2:c.661T>C	ENSMUSP00000147713.1:p.Tyr221His	H-2-Kb	8	7	5	IAISHIYI	IAISYIYI	NetMHCpan	132.8	22.8	0.172	574	0.254	294.664	57.982	0.197	28.92	212.85	22.8	132.8	99.25216755	384.3616066	87.04423244	376.4783444	M8_p20	1.428571429	1.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.257	574	0	0	NA	7qE3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr7	26611187	26611187	T	C	ENSMUST00000228367.1	NA	ENSMUSG00000091924	missense	M/V	298	Vmn1r185	ENSMUST00000228367.1:c.892A>G	ENSMUSP00000154816.1:p.Met298Val	H-2-Kb	8	4	8	FMRSYSLV	FMRSYSLM	NetMHC	238.94	166.52	0.697	202	0.248	450.026	344.108	0.765	166.52	238.94	202.1	466.8	486.1160944	433.2514252	558.1359543	516.1072977	M8_p20	0.357142857	0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.242	202	0	0	NA	7qA3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr7	91940074	91940074	T	A	ENSMUST00000107196.9	1	ENSMUSG00000052572	missense	I/N	227	Dlg2	ENSMUST00000107196.9:c.680T>A	ENSMUSP00000102814.2:p.Ile227Asn	H-2-Kb	8	5	7	SIYVTKNI	SIYVTKII	NetMHC	242.01	2437.57	10.072	199	0.307	286.831	2390.198	8.333	2437.57	242.01	1637.8	259.8	2481.646968	364.5356443	2342.825811	313.8629122	M8_p20	0.542857143	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.301	199	0	0	NA	7qE1	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr7	106824071	106824071	C	A	ENSMUST00000219803.1	5	ENSMUSG00000056863	missense	G/W	152	Olfr702	ENSMUST00000219803.1:c.454G>T	ENSMUSP00000151862.1:p.Gly152Trp	H-2-Kb	8	9	3	ISWAFACS	ISGAFACS	SMM	38.172	270.234	7.079	141	0.255	141.556	2939.39	20.765	5597.11	244.41	6338.9	456.7	270.2340064	38.17156799	281.6696149	38.70258739	M8_p20	0.914285714	1.671428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.256	141	0	0	NA	7qE3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr7	105555462	105555462	AC	A	ENSMUST00000046983.9	1	ENSMUSG00000037049	FS	P/X	183	Smpd1	ENSMUST00000046983.9:c.551del	ENSMUSP00000042187.8:p.Pro184GlnfsTer72	H-2-Kb	8	38	0	STWRAQTL	NA	NetMHCpan	140.5	NA	NA	119	0.277	249.349	NA	NA	NA	259.51	NA	140.5	NA	239.1883374	NA	262.2647967	M8_p20	-0.671428571	-0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.27	119	0	0	NA	7qE3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr7	105035532	105035532	C	CT	ENSMUST00000219602.1	5	ENSMUSG00000073915	FS	-/X	111-112	Olfr676	ENSMUST00000219602.1:c.339dup	ENSMUSP00000151474.1:p.Ile114TyrfsTer18	H-2-Kb	8	10	5	QVFFYPFF	QVFFIHFF	NetMHCpan	106.3	1372.2	12.909	230	0.33	344.084	5756.326	16.729	3500.67	307.33	1372.2	106.3	9198.986892	380.8377582	8011.982647	428.2920371	M8_p20	1.785714286	1.785714286	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.315	230	0	0	NA	7qE3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr7	106944356	106944356	A	G	ENSMUST00000055923.7	5	ENSMUSG00000045581	missense	L/P	215	Olfr710	ENSMUST00000055923.7:c.644T>C	ENSMUSP00000062956.5:p.Leu215Pro	H-2-Kb	8	10	2	IPFSYWNI	ILFSYWNI	SMM	41.662	43.027	1.033	99	0.202	107.767	39.513	0.367	142.3	367.87	36	173	43.02689433	41.66198901	35.21599796	42.53436955	M8_p20	-0.114285714	-0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	99	0	0	NA	7qE3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr7	44991432	44991432	G	A	ENSMUST00000003290.11	1	ENSMUSG00000003190	missense	P/L	247	Bcl2l12	ENSMUST00000003290.11:c.740C>T	ENSMUSP00000003290.4:p.Pro247Leu	H-2-Kb	8	11	3	SSLVDLNL	SSPVDLNL	SMM	179.779	421.444	2.344	99	0.333	279.298	740.051	2.65	999.55	371.64	2236.3	1019.5	421.444121	179.7794304	480.5515695	186.956255	M8_p20	1.114285714	1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.322	99	0	0	NA	7qB3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	2	1	sgMsh2	cell line
chr7	56729649	56729649	G	A	ENSMUST00000068911.12	1	ENSMUSG00000055026	missense	A/V	335	Gabrg3	ENSMUST00000068911.12:c.1004C>T	ENSMUSP00000067632.6:p.Ala335Val	H-2-Kb	8	6	6	ALMEYVTL	ALMEYATL	NetMHCpan	79.7	36.7	0.46	142	0.232	330.702	69.813	0.211	43.3	383.6	36.7	79.7	134.5054866	388.8123042	96.32521787	277.8049629	M8_p20	1.171428571	1.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.213	142	0	0	NA	7qB5	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	0.962779623	sgMsh2	cell line
chr7	100503182	100503182	A	G	ENSMUST00000207405.1	1	ENSMUSG00000030708	missense	M/T	309	Dnajb13	ENSMUST00000207405.1:c.926T>C	ENSMUSP00000147019.1:p.Met309Thr	H-2-Kb	8	13	2	QTLRQALL	QMLRQALL	SMM	286.906	520.883	1.816	54	0.389	461.754	706.441	1.53	350.19	416.82	892	1408.6	520.8827797	286.906244	911.4650073	506.6872779	M8_p20	0.642857143	0.642857143	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.375	54	0	0	NA	7qE2	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	2	1	sgMsh2	cell line
chr7	56729649	56729649	G	A	ENSMUST00000068911.12	1	ENSMUSG00000055026	missense	A/V	335	Gabrg3	ENSMUST00000068911.12:c.1004C>T	ENSMUSP00000067632.6:p.Ala335Val	H-2-Kb	8	11	1	VTLNYYSS	ATLNYYSS	SMM	108.079	407.136	3.767	142	0.232	307.162	1563.79	5.091	2498.45	430.78	2584.4	770.3	407.1364636	108.0786721	629.1294278	183.5439188	M8_p20	-0.657142857	0.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.213	142	0	0	NA	7qB5	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	0.962779623	sgMsh2	cell line
chr7	108066532	108066532	T	C	ENSMUST00000071658.2	NA	ENSMUSG00000063120	missense	M/V	89	Olfr480	ENSMUST00000071658.2:c.265A>G	ENSMUSP00000071583.2:p.Met89Val	H-2-Kb	8	8	4	HTPVYLFL	HTPMYLFL	NetMHCpan	245.7	219.6	0.894	256	0.242	262.002	292.515	1.116	407.26	463.94	219.6	245.7	316.0385059	266.5262568	268.9923939	257.4779247	M8_p20	1.571428571	1.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.235	256	0	0	NA	7qE3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr7	62419972	62419972	TC	T	ENSMUST00000094340.3	NA	ENSMUSG00000070527	FS	E/X	24	Mkrn3	ENSMUST00000094340.3:c.70del	ENSMUSP00000091898.3:p.Glu24ArgfsTer36	H-2-Kb	8	19	0	LSLRLLEL	NA	NetMHCpan	293.7	NA	NA	13	0.538	477.609	NA	NA	NA	496.72	NA	293.7	NA	496.2951144	NA	458.9231861	M8_p20	0.914285714	0.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.513	13	0	0	NA	7qC	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	2	1	sgMsh2	cell line
chr7	86811337	86811337	G	A	ENSMUST00000164996.1	5	ENSMUSG00000090949	missense	V/I	624	Vmn2r77	ENSMUST00000164996.1:c.1870G>A	ENSMUSP00000129540.1:p.Val624Ile	H-2-Kb	8	6	6	ETLSYILL	ETLSYVLL	SMMPMBEC	299.737	258.071	0.861	462	0.255	438.719	380.319	0.867	864.89	988.22	444.6	532.5	316.0385059	344.9371732	258.0714726	299.7367541	M8_p20	1.871428571	1.871428571	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.261	462	0	0	NA	7qD3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr7	86811337	86811337	G	A	ENSMUST00000164996.1	5	ENSMUSG00000090949	missense	V/I	624	Vmn2r77	ENSMUST00000164996.1:c.1870G>A	ENSMUSP00000129540.1:p.Val624Ile	H-2-Kb	9	8	4	LSYILLTSL	LSYVLLTSL	NetMHCpan	26.5	23.3	0.879	462	0.255	55.636	50.423	0.906	24.09	28.24	23.3	26.5	76.75558746	92.92017092	84.382036	83.03286055	M8_p20	1.871428571	1.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.261	462	0	0	NA	7qD3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr7	108066532	108066532	T	C	ENSMUST00000071658.2	NA	ENSMUSG00000063120	missense	M/V	89	Olfr480	ENSMUST00000071658.2:c.265A>G	ENSMUSP00000071583.2:p.Met89Val	H-2-Kb	9	10	2	PVYLFLSHL	PMYLFLSHL	SMM	27.74	12.797	0.461	256	0.242	31.825	25.891	0.814	28.38	30.85	39.4	32.8	12.79705392	27.74022632	23.40183969	47.56089297	M8_p20	1.271428571	1.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.235	256	0	0	NA	7qE3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr7	106824071	106824071	C	A	ENSMUST00000219803.1	5	ENSMUSG00000056863	missense	G/W	152	Olfr702	ENSMUST00000219803.1:c.454G>T	ENSMUSP00000151862.1:p.Gly152Trp	H-2-Kb	9	9	3	ISWAFACSV	ISGAFACSV	NetMHCpan	23.3	348.2	14.944	141	0.255	185.375	608.69	3.284	306.45	32.6	348.2	23.3	869.1805512	338.1504736	910.4372116	348.5378918	M8_p20	1.628571429	1.671428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.256	141	0	0	NA	7qE3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr7	26611187	26611187	T	C	ENSMUST00000228367.1	NA	ENSMUSG00000091924	missense	M/V	298	Vmn1r185	ENSMUST00000228367.1:c.892A>G	ENSMUSP00000154816.1:p.Met298Val	H-2-Kb	9	11	1	VSRFNLAHL	MSRFNLAHL	NetMHC	34.25	88.62	2.587	202	0.248	91.603	217.283	2.372	88.62	34.25	130.4	64.6	304.1655332	118.6069123	327.5291816	126.5464598	M8_p20	0.142857143	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.242	202	0	0	NA	7qA3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr7	56729649	56729649	G	A	ENSMUST00000068911.12	1	ENSMUSG00000055026	missense	A/V	335	Gabrg3	ENSMUST00000068911.12:c.1004C>T	ENSMUSP00000067632.6:p.Ala335Val	H-2-Kb	9	11	1	VTLNYYSSC	ATLNYYSSC	NetMHC	34.3	134.82	3.931	142	0.232	103.7	315.246	3.04	134.82	34.3	215.3	57	708.1251187	238.292295	415.1929781	150.4007493	M8_p20	-0.2	0.057142857	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.213	142	0	0	NA	7qB5	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	0.962779623	sgMsh2	cell line
chr7	105035532	105035532	C	CT	ENSMUST00000219602.1	5	ENSMUSG00000073915	FS	-/X	111-112	Olfr676	ENSMUST00000219602.1:c.339dup	ENSMUSP00000151474.1:p.Ile114TyrfsTer18	H-2-Kb	9	8	7	VAQVFFYPF	VAQVFFIHF	NetMHC	36.21	51.23	1.415	230	0.33	51.855	75.794	1.462	51.23	36.21	132.8	56.6	62.82174563	47.10966327	88.76668471	75.72686885	M8_p20	0.885714286	1.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.315	230	0	0	NA	7qE3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr7	25630422	25630422	G	T	ENSMUST00000205808.1	5	ENSMUSG00000060376	missense	P/H	92	Bckdha	ENSMUST00000205808.1:c.275C>A	ENSMUSP00000146018.1:p.Pro92His	H-2-Kb	9	10	5	RSWKHLSRL	RSWKPLSRL	NetMHCpan	40.3	284.5	7.06	37	0.324	90.509	379.431	4.192	202.73	43.85	284.5	40.3	474.3621186	146.9298381	571.8077009	137.1671136	M8_p20	-0.814285714	-0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.333	37	0	0	NA	7qA3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	2	1	sgMsh2	cell line
chr7	99667112	99667112	T	C	ENSMUST00000107088.7	1	ENSMUSG00000030737	missense	T/A	404	Slco2b1	ENSMUST00000107088.7:c.1210A>G	ENSMUSP00000102703.1:p.Thr404Ala	H-2-Kb	9	10	2	IAASFANML	ITASFANML	NetMHC	49.5	59.95	1.211	73	0.233	106.089	142.925	1.347	59.95	49.5	72	56.9	213.850367	155.2780255	358.3026333	277.4917016	M8_p20	1.114285714	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.265	73	0	0	NA	7qE1	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr7	99667112	99667112	T	C	ENSMUST00000107088.7	1	ENSMUSG00000030737	missense	T/A	404	Slco2b1	ENSMUST00000107088.7:c.1210A>G	ENSMUSP00000102703.1:p.Thr404Ala	H-2-Kb	9	9	3	SIAASFANM	SITASFANM	NetMHC	52.64	67.03	1.273	73	0.233	261.476	391.398	1.497	67.03	52.64	142.9	83.3	639.8968908	439.6529586	738.3291242	556.2243536	M8_p20	0.828571429	1.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.265	73	0	0	NA	7qE1	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr7	26611187	26611187	T	C	ENSMUST00000228367.1	NA	ENSMUSG00000091924	missense	M/V	298	Vmn1r185	ENSMUST00000228367.1:c.892A>G	ENSMUSP00000154816.1:p.Met298Val	H-2-Kb	9	3	9	VFMRSYSLV	VFMRSYSLM	NetMHC	86.79	66.95	0.771	202	0.248	195.423	101.978	0.522	66.95	86.79	103.7	265	100.2559138	171.4391481	132.8158787	219.4067579	M8_p20	0.357142857	0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.242	202	0	0	NA	7qA3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr7	86230157	86230157	G	T	ENSMUST00000165771.1	5	ENSMUSG00000091239	missense	L/I	312	Vmn2r76	ENSMUST00000165771.1:c.934C>A	ENSMUSP00000127309.1:p.Leu312Ile	H-2-Kb	9	11	1	IFNSFHGTL	LFNSFHGTL	NetMHC	90.6	323.06	3.566	165	0.176	213.074	517.132	2.427	323.06	90.6	536.4	171.4	497.86317	254.7475407	565.2622723	289.2344371	M8_p20	-0.285714286	0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.186	165	0	0	NA	7qD3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	0.840737136	sgMsh2	cell line
chr7	106944356	106944356	A	G	ENSMUST00000055923.7	5	ENSMUSG00000045581	missense	L/P	215	Olfr710	ENSMUST00000055923.7:c.644T>C	ENSMUSP00000062956.5:p.Leu215Pro	H-2-Kb	9	7	5	VSLIPFSYW	VSLILFSYW	NetMHC	122.33	104.11	0.851	99	0.202	406.59	272.979	0.671	104.11	122.33	907	988.8	333.5108752	449.8937915	212.4467052	363.2871195	M8_p20	0.928571429	1.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	99	0	0	NA	7qE3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr7	26611187	26611187	T	C	ENSMUST00000228367.1	NA	ENSMUSG00000091924	missense	M/V	298	Vmn1r185	ENSMUST00000228367.1:c.892A>G	ENSMUSP00000154816.1:p.Met298Val	H-2-Kb	9	6	6	RSYSLVSRF	RSYSLMSRF	NetMHCpan	141.6	108.4	0.766	202	0.248	189.696	134.173	0.707	111.27	145.45	108.4	141.6	157.0760603	233.9429705	198.2668013	302.8656361	M8_p20	0.485714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.242	202	0	0	NA	7qA3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr7	108031681	108031681	A	G	ENSMUST00000210173.2	3	ENSMUSG00000094426	missense	Y/H	221	Olfr478	ENSMUST00000210173.2:c.661T>C	ENSMUSP00000147713.1:p.Tyr221His	H-2-Kb	9	7	5	IAISHIYIL	IAISYIYIL	NetMHCpan	89.6	39.6	0.442	574	0.254	172.099	112.772	0.655	92.77	178.58	39.6	89.6	132.7730709	165.6189397	178.3405083	224.0010221	M8_p20	1.714285714	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.257	574	0	0	NA	7qE3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr7	86802040	86802040	G	T	ENSMUST00000164996.1	5	ENSMUSG00000090949	missense	W/L	378	Vmn2r77	ENSMUST00000164996.1:c.1133G>T	ENSMUSP00000129540.1:p.Trp378Leu	H-2-Kb	9	9	3	FQLFFEPPL	FQWFFEPPL	NetMHC	194.17	122.63	0.632	445	0.254	236.011	185.141	0.784	122.63	194.17	181	229.3	189.282298	242.7224795	210.0148478	293.2580889	M8_p20	0.928571429	0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.254	445	0	0	NA	7qD3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr7	56729649	56729649	G	A	ENSMUST00000068911.12	1	ENSMUSG00000055026	missense	A/V	335	Gabrg3	ENSMUST00000068911.12:c.1004C>T	ENSMUSP00000067632.6:p.Ala335Val	H-2-Kb	9	5	7	AALMEYVTL	AALMEYATL	NetMHCpan	102.2	38.8	0.38	142	0.232	233.107	112.558	0.483	37.47	213.72	38.8	102.2	197.2922383	284.5181656	186.3159349	252.4933823	M8_p20	1.171428571	1.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.213	142	0	0	NA	7qB5	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	0.962779623	sgMsh2	cell line
chr7	66784798	66784798	T	C	ENSMUST00000066475.10	1	ENSMUSG00000030510	missense	W/R	216	Cers3	ENSMUST00000066475.10:c.646T>C	ENSMUSP00000069238.8:p.Trp216Arg	H-2-Kb	9	8	4	SQYRYYILE	SQYWYYILE	SMM	92.493	70.325	0.76	438	0.231	160.502	195.895	1.221	314.3	217.43	396.3	364.7	70.32504197	92.49324152	77.49077422	103.5738214	M8_p20	-0.514285714	-0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.233	438	0	0	NA	7qC	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr7	44860083	44860083	A	T	ENSMUST00000003044.13	1	ENSMUSG00000002963	missense	I/F	214	Pnkp	ENSMUST00000003044.13:c.640A>T	ENSMUSP00000003044.7:p.Ile214Phe	H-2-Kb	9	10	2	VFFTNQMGI	VIFTNQMGI	NetMHC	224.67	173.98	0.774	138	0.203	495.62	287.013	0.579	173.98	224.67	171	466.3	400.0460623	524.9404026	441.8247089	598.7561676	M8_p20	0.157142857	0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.204	138	0	0	NA	7qB3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	0.922098794	sgMsh2	cell line
chr7	55933103	55933103	G	A	ENSMUST00000119201.7	1	ENSMUSG00000030452	missense	A/V	298	Nipa2	ENSMUST00000119201.7:c.893C>T	ENSMUSP00000114020.1:p.Ala298Val	H-2-Kb	9	3	9	IVGIFLLHV	IVGIFLLHA	SMMPMBEC	293.934	1014.495	3.451	142	0.303	319.481	1799.346	5.632	2393.35	336.89	4122.3	831.1	1205.341196	302.0716724	1014.495208	293.9341186	M8_p20	2.214285714	3.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.304	142	0	0	NA	7qB5	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr7	105035532	105035532	C	CT	ENSMUST00000219602.1	5	ENSMUSG00000073915	FS	-/X	111-112	Olfr676	ENSMUST00000219602.1:c.339dup	ENSMUSP00000151474.1:p.Ile114TyrfsTer18	H-2-Kb	9	9	6	AQVFFYPFF	AQVFFIHFF	NetMHCpan	267.8	1677.2	6.263	230	0.33	330.906	2524.533	7.629	3054.59	389.15	1677.2	267.8	2529.938709	327.4236157	2519.126636	334.3874735	M8_p20	1.785714286	1.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.315	230	0	0	NA	7qE3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr7	106944356	106944356	A	G	ENSMUST00000055923.7	5	ENSMUSG00000045581	missense	L/P	215	Olfr710	ENSMUST00000055923.7:c.644T>C	ENSMUSP00000062956.5:p.Leu215Pro	H-2-Kb	9	10	2	IPFSYWNII	ILFSYWNII	SMM	376.799	180.347	0.479	99	0.202	455.19	182.265	0.4	220.3	452.78	82.2	457.6	180.3474475	376.7992242	184.183194	462.6472659	M8_p20	0.757142857	0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	99	0	0	NA	7qE3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr7	45897436	45897436	C	T	ENSMUST00000069772.15	1	ENSMUSG00000002781	missense	L/F	9	Tmem143	ENSMUST00000069772.15:c.25C>T	ENSMUSP00000070405.7:p.Leu9Phe	H-2-Kb	9	1	9	MTVARWLRF	MTVARWLRL	SMMPMBEC	346.937	200.563	0.578	49	0.224	447.198	172.436	0.386	144.31	476.98	90.6	447.6	264.9171047	446.7967444	200.5626226	346.9365057	M8_p20	0.385714286	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.233	49	0	0	NA	7qB3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr7	103716732	103716732	T	C	ENSMUST00000215723.1	5	ENSMUSG00000094822	missense	L/P	46	Olfr243	ENSMUST00000215723.1:c.137T>C	ENSMUSP00000150329.1:p.Leu46Pro	H-2-Kb	9	4	8	IALLGNSPL	IALLGNSLL	SMMPMBEC	414.238	577.099	1.393	354	0.212	461.459	791.636	1.716	1041.48	535.68	950.7	426.2	632.5720517	496.7181164	577.0985724	414.2380608	M8_p20	0.728571429	1.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.221	354	0	0	NA	7qE3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	0.99894036	sgMsh2	cell line
chr7	81348426	81348426	T	A	ENSMUST00000178892.2	1	ENSMUSG00000025586	missense	Y/F	535	Cpeb1	ENSMUST00000178892.2:c.1604A>T	ENSMUSP00000137079.1:p.Tyr535Phe	H-2-Kb	9	7	5	VCFKFFCRS	VCFKYFCRS	SMM	96.407	118.607	1.23	60	0.15	202.811	222.153	1.095	822.05	618.66	325.7	298.9	118.6069123	96.40731774	113.5664369	106.721028	M8_p20	0.242857143	1.957142857	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.184	60	0	0	NA	7qD3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	0.831696951	sgMsh2	cell line
chr8	13576361	13576361	T	C	ENSMUST00000117551.3	1	ENSMUSG00000031453	missense	M/V	741	Rasa3	ENSMUST00000117551.3:c.2221A>G	ENSMUSP00000112998.2:p.Met741Val	H-2-Db	9	4	8	YSLFNLYVG	YSLFNLYMG	NetMHC	87.93	363.82	4.138	150	0.253	182.548	418.279	2.291	363.82	87.93	556	201.2	472.737441	298.2771604	313.0184957	163.896621	M8_p20	1.342857143	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.245	150	0	0	NA	8qA1.1	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr8	109551631	109551631	C	T	ENSMUST00000042601.8	1	ENSMUSG00000037993	missense	D/N	1138	Dhx38	ENSMUST00000042601.8:c.3412G>A	ENSMUSP00000047865.7:p.Asp1138Asn	H-2-Db	9	7	5	VTAVNGEWL	VTAVDGEWL	NetMHC	127.35	8821.39	69.269	170	0.247	384.136	9938.338	25.872	8821.39	127.35	6722.3	173.2	12723.89276	660.1156057	11055.28645	595.0726634	M8_p20	0.214285714	0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.235	170	0	0	NA	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr8	10506522	10506522	TA	T	ENSMUST00000207477.1	1	ENSMUSG00000039057	FS	L/X	994	Myo16	ENSMUST00000207477.1:c.2987del	ENSMUSP00000146677.1:p.Lys996ArgfsTer74	H-2-Kb	8	53	0	SSFASSPI	NA	NetMHC	58.49	NA	NA	94	0.223	87.215	NA	NA	NA	58.49	NA	66.6	NA	107.830098	NA	122.6704617	M8_p20	0.728571429	0.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.197	94	0	0	NA	8qA1.1	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	0.890458149	sgMsh2	cell line
chr8	56110553	56110553	A	G	ENSMUST00000000275.8	1	ENSMUSG00000038257	missense	K/R	361	Glra3	ENSMUST00000000275.8:c.1082A>G	ENSMUSP00000000275.7:p.Lys361Arg	H-2-Kb	8	6	6	VSRQHREL	VSRQHKEL	SMM	69.621	143.794	2.065	282	0.241	100.959	250.036	2.477	322.76	105.37	1502.7	872.9	143.7937467	69.6209588	177.3127641	96.54727043	M8_p20	-2.314285714	-2.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.243	282	0	0	NA	8qB2	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr7	127905762	127905762	T	C	ENSMUST00000071056.13	1	ENSMUSG00000030802	missense	I/T	130	Bckdk	ENSMUST00000071056.13:c.389T>C	ENSMUSP00000070345.7:p.Ile130Thr	H-2-Kb	8	10	2	YTRAFQKL	YIRAFQKL	NetMHCpan	121.7	137.9	1.133	252	0.23	139.122	142.352	1.023	95.73	131.44	137.9	121.7	146.8047136	146.8047136	188.2521739	180.6092545	M8_p20	-0.6	-0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.253	252	0	0	NA	7qF3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr7	108171874	108171874	G	A	ENSMUST00000072035.3	NA	ENSMUSG00000096068	missense	P/L	290	Olfr486	ENSMUST00000072035.3:c.869C>T	ENSMUSP00000071918.3:p.Pro290Leu	H-2-Kb	8	5	7	VIPVLNLL	VIPVLNPL	NetMHC	173.73	43.03	0.248	267	0.24	354.134	130.801	0.369	43.03	173.73	146.4	422.9	115.8083836	306.71852	145.794117	401.5503419	M8_p20	2.142857143	2.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.248	267	0	0	NA	7qE3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr7	128271182	128271182	C	T	ENSMUST00000118169.7	1	ENSMUSG00000030781	missense	L/F	531	Slc5a2	ENSMUST00000118169.7:c.1591C>T	ENSMUSP00000112597.1:p.Leu531Phe	H-2-Kb	8	10	2	IFFICSGI	ILFICSGI	SMMPMBEC	175.687	391.507	2.228	167	0.174	225.83	490.678	2.173	781.7	250.87	329.4	282.9	589.847849	200.7890385	391.5074224	175.6871509	M8_p20	2.271428571	2.271428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.179	167	0	0	NA	7qF3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	0.809096491	sgMsh2	cell line
chr7	108714066	108714066	C	A	ENSMUST00000074730.3	NA	ENSMUSG00000056946	missense	L/M	238	Olfr512	ENSMUST00000074730.3:c.712C>A	ENSMUSP00000074291.4:p.Leu238Met	H-2-Kb	8	6	6	ILFTIMRM	ILFTILRM	NetMHCpan	74.1	112.6	1.52	403	0.238	290.124	605.685	2.088	729.71	264.21	112.6	74.1	758.1235717	462.1042896	481.6593553	316.0385059	M8_p20	1.385714286	1.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.242	403	0	0	NA	7qE3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr8	105878842	105878842	T	C	ENSMUST00000008594.8	1	ENSMUSG00000008450	missense	F/S	103	Nutf2	ENSMUST00000008594.8:c.308T>C	ENSMUSP00000008594.7:p.Phe103Ser	H-2-Kb	8	5	7	MGFHQMSL	MGFHQMFL	NetMHCpan	61.8	73.9	1.196	277	0.285	150.906	134.413	0.891	345.7	271.66	73.9	61.8	105.6185011	124.0909187	163.2074578	177.7215122	M8_p20	0.085714286	0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.279	277	0	0	NA	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr7	141466182	141466182	GC	G	ENSMUST00000053670.11	1	ENSMUSG00000048200	FS	P/X	382	Cracr2b	ENSMUST00000053670.11:c.1149del	ENSMUSP00000055899.5:p.Arg384AspfsTer84	H-2-Kb	8	75	0	SVFILSSF	NA	NetMHCpan	118.6	NA	NA	44	0.341	487.755	NA	NA	NA	293.58	NA	118.6	NA	840.8915726	NA	681.9303192	M8_p20	2.357142857	2.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.352	44	0	0	NA	7qF5	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	2	1	sgMsh2	cell line
chr8	83725234	83725234	A	G	ENSMUST00000075843.12	1	ENSMUSG00000002885	missense	M/T	563	Adgre5	ENSMUST00000075843.12:c.1688T>C	ENSMUSP00000075240.6:p.Met563Thr	H-2-Kb	8	7	5	SSRTTVHL	SSRTMVHL	SMMPMBEC	310.27	134.196	0.433	175	0.257	344.132	130.589	0.379	73.79	367.09	280.6	1261.9	126.9813676	321.1737185	134.1961326	310.2701531	M8_p20	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.261	175	0	0	NA	8qC2	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr8	109551631	109551631	C	T	ENSMUST00000042601.8	1	ENSMUSG00000037993	missense	D/N	1138	Dhx38	ENSMUST00000042601.8:c.3412G>A	ENSMUSP00000047865.7:p.Asp1138Asn	H-2-Kb	9	10	2	VNGEWLAEL	VDGEWLAEL	NetMHC	116.53	3630.39	31.154	170	0.247	130.917	2132.941	16.292	3630.39	116.53	5738.1	292.5	635.4918716	125.9244318	562.6651281	135.909558	M8_p20	0.157142857	0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.235	170	0	0	NA	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr8	105878842	105878842	T	C	ENSMUST00000008594.8	1	ENSMUSG00000008450	missense	F/S	103	Nutf2	ENSMUST00000008594.8:c.308T>C	ENSMUSP00000008594.7:p.Phe103Ser	H-2-Kb	9	4	8	IMGFHQMSL	IMGFHQMFL	SMMPMBEC	166.437	225.554	1.355	277	0.285	175.497	253.816	1.446	305.48	177.57	275.3	221.2	232.3325184	173.4243199	225.553723	166.4370463	M8_p20	0.085714286	0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.279	277	0	0	NA	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr8	105878842	105878842	T	C	ENSMUST00000008594.8	1	ENSMUSG00000008450	missense	F/S	103	Nutf2	ENSMUST00000008594.8:c.308T>C	ENSMUSP00000008594.7:p.Phe103Ser	H-2-Kb	9	5	7	MGFHQMSLL	MGFHQMFLL	NetMHCpan	61.9	85	1.373	277	0.285	289.966	372.137	1.283	284.96	204	85	61.9	459.3143352	375.9326101	492.3228579	387.4806325	M8_p20	0.685714286	0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.279	277	0	0	NA	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr7	141466182	141466182	GC	G	ENSMUST00000053670.11	1	ENSMUSG00000048200	FS	P/X	382	Cracr2b	ENSMUST00000053670.11:c.1149del	ENSMUSP00000055899.5:p.Arg384AspfsTer84	H-2-Kb	9	80	0	SSFFLGGGV	NA	NetMHCpan	198.4	NA	NA	44	0.341	391.716	NA	NA	NA	215.56	NA	198.4	NA	626.7725963	NA	567.8714044	M8_p20	1.771428571	1.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.352	44	0	0	NA	7qF5	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	2	1	sgMsh2	cell line
chr7	138229856	138229856	A	G	ENSMUST00000160436.1	5	ENSMUSG00000091002	missense	M/T	464	Tcerg1l	ENSMUST00000160436.1:c.1391T>C	ENSMUSP00000124476.1:p.Met464Thr	H-2-Kb	9	5	7	VTHFRDTLL	VTHFRDMLL	SMMPMBEC	144.295	160.048	1.109	60	0.217	193.254	171.84	0.889	177.68	224.66	340.6	468.5	166.0007308	161.8489924	160.0479073	144.2945739	M8_p20	-0.214285714	-0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.21	60	0	0	NA	7qF4	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	0.949219347	sgMsh2	cell line
chr7	141466182	141466182	GC	G	ENSMUST00000053670.11	1	ENSMUSG00000048200	FS	P/X	382	Cracr2b	ENSMUST00000053670.11:c.1149del	ENSMUSP00000055899.5:p.Arg384AspfsTer84	H-2-Kb	9	75	0	SVFILSSFF	NA	NetMHC	240.43	NA	NA	44	0.341	282.49	NA	NA	NA	240.43	NA	249.4	NA	315.5803838	NA	438.783209	M8_p20	2.157142857	2.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.352	44	0	0	NA	7qF5	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	2	1	sgMsh2	cell line
chr7	128271182	128271182	C	T	ENSMUST00000118169.7	1	ENSMUSG00000030781	missense	L/F	531	Slc5a2	ENSMUST00000118169.7:c.1591C>T	ENSMUSP00000112597.1:p.Leu531Phe	H-2-Kb	9	9	3	IIFFICSGI	IILFICSGI	NetMHCpan	210.9	998.4	4.734	167	0.174	302.474	1002.956	3.316	985.29	241.66	998.4	210.9	1177.90428	419.8653158	1007.511472	363.2871195	M8_p20	2.271428571	2.971428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.179	167	0	0	NA	7qF3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	0.809096491	sgMsh2	cell line
chr7	141466182	141466182	GC	G	ENSMUST00000053670.11	1	ENSMUSG00000048200	FS	P/X	382	Cracr2b	ENSMUST00000053670.11:c.1149del	ENSMUSP00000055899.5:p.Arg384AspfsTer84	H-2-Kb	9	52	0	VALPRRHPM	NA	SMM	174.225	NA	NA	44	0.341	228.114	NA	NA	NA	268.62	NA	297	NA	174.2248102	NA	187.6074152	M8_p20	-1.385714286	-0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.352	44	0	0	NA	7qF5	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	2	1	sgMsh2	cell line
chr7	108317521	108317521	T	C	ENSMUST00000214605.1	2	ENSMUSG00000094612	missense	V/A	209	Olfr491	ENSMUST00000214605.1:c.626T>C	ENSMUSP00000150694.1:p.Val209Ala	H-2-Kb	9	10	2	VATVFVISV	VVTVFVISV	NetMHC	342.27	467.62	1.366	519	0.193	395.11	553.012	1.4	467.62	342.27	735.6	356.6	487.6519891	433.6206938	618.3722614	534.872168	M8_p20	2.628571429	3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.207	519	0	0	NA	7qE3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	0.93565907	sgMsh2	cell line
chr7	128271182	128271182	C	T	ENSMUST00000118169.7	1	ENSMUSG00000030781	missense	L/F	531	Slc5a2	ENSMUST00000118169.7:c.1591C>T	ENSMUSP00000112597.1:p.Leu531Phe	H-2-Kb	9	10	2	IFFICSGIL	ILFICSGIL	SMM	278.042	722.953	2.6	167	0.174	316.448	665.719	2.104	905.08	347.63	437.3	359.4	722.9528931	278.0417415	608.4851727	285.2659918	M8_p20	2.414285714	2.414285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.179	167	0	0	NA	7qF3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	0.809096491	sgMsh2	cell line
chr8	56110553	56110553	A	G	ENSMUST00000000275.8	1	ENSMUSG00000038257	missense	K/R	361	Glra3	ENSMUST00000000275.8:c.1082A>G	ENSMUSP00000000275.7:p.Lys361Arg	H-2-Kb	9	6	6	VSRQHRELL	VSRQHKELL	SMM	223.414	253.577	1.135	282	0.241	294.719	447.137	1.517	629.88	360.22	1230.8	842.1	253.577082	223.4138023	264.3930288	229.2186762	M8_p20	-1.657142857	-1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.243	282	0	0	NA	8qB2	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr7	141466182	141466182	GC	G	ENSMUST00000053670.11	1	ENSMUSG00000048200	FS	P/X	382	Cracr2b	ENSMUST00000053670.11:c.1149del	ENSMUSP00000055899.5:p.Arg384AspfsTer84	H-2-Kb	9	68	0	VVKAFSPSV	NA	NetMHCpan	263.7	NA	NA	44	0.341	439.311	NA	NA	NA	378.46	NA	263.7	NA	500.1612019	NA	600.1364431	M8_p20	0.242857143	0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.352	44	0	0	NA	7qF5	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	2	1	sgMsh2	cell line
chr8	105178615	105178615	A	T	ENSMUST00000052209.8	1	ENSMUSG00000031885	missense	N/I	63	Cbfb	ENSMUST00000052209.8:c.188A>T	ENSMUSP00000059382.2:p.Asn63Ile	H-2-Kb	9	3	9	IAFVATGTI	IAFVATGTN	NetMHCpan	147.4	7924.2	53.76	152	0.243	476.809	5159.061	10.82	13674.64	401.4	7924.2	147.4	2393.922023	552.2172896	1762.990613	624.0939895	M8_p20	1.642857143	2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.26	152	0	0	NA	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr8	105395284	105395284	C	A	ENSMUST00000063071.12	1	ENSMUSG00000051648	missense	E/D	210	Kctd19	ENSMUST00000063071.12:c.630G>T	ENSMUSP00000050687.6:p.Glu210Asp	H-2-Kb	9	10	2	SDFRFIVNF	SEFRFIVNF	NetMHCpan	372.9	503.4	1.35	58	0.31	410.724	421.488	1.026	380.67	481.17	503.4	372.9	412.2019102	427.6711949	430.7745129	393.7766863	M8_p20	1.3	1.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.324	58	0	0	NA	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	2	1	sgMsh2	cell line
chr9	80136750	80136750	GA	G	ENSMUST00000165607.8	1	ENSMUSG00000034252	FS	K/X	888	Senp6	ENSMUST00000165607.8:c.2672del	ENSMUSP00000126777.2:p.Asn891IlefsTer44	H-2-Db	9	42	0	ASGMNASVL	NA	NetMHC	36.8	NA	NA	122	0.262	141.593	NA	NA	NA	36.8	NA	75.9	NA	216.0827011	NA	207.2860138	M8_p20	1	1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.279	122	0	0	NA	9qE1	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr9	100855832	100855832	A	T	ENSMUST00000129269.7	1	ENSMUSG00000037286	missense	E/V	414	Stag1	ENSMUST00000129269.7:c.1241A>T	ENSMUSP00000116205.1:p.Glu414Val	H-2-Db	9	3	9	EALSNEDCV	EALSNEDCE	NetMHC	162.17	20754.53	127.98	392	0.235	364.555	11513.819	31.583	20754.53	162.17	29954.3	951.5	2273.107631	411.7370988	1269.316718	317.3730167	M8_p20	-0.114285714	-0.114285714	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.23	392	0	0	NA	9qE3.3	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr8	124028933	124028933	T	C	ENSMUST00000034457.8	1	ENSMUSG00000031976	missense	Y/H	460	Urb2	ENSMUST00000034457.8:c.1378T>C	ENSMUSP00000034457.8:p.Tyr460His	H-2-Kb	8	7	5	VFQTHAKL	VFQTYAKL	SMM	70.915	18.312	0.258	173	0.133	106.19	20.473	0.193	16.15	114.49	51	301.1	18.31217795	70.91530907	22.63288934	97.89037676	M8_p20	-0.414285714	-0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.162	173	0	0	NA	8qE2	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	0.732254925	sgMsh2	cell line
chr9	39258136	39258136	A	C	ENSMUST00000076903.2	NA	ENSMUSG00000063380	missense	C/G	182	Olfr945	ENSMUST00000076903.2:c.544T>G	ENSMUSP00000076169.2:p.Cys182Gly	H-2-Kb	8	6	6	INHYFGDI	INHYFCDI	NetMHCpan	102	90.9	0.891	368	0.522	276.289	313.213	1.134	217.41	182.12	90.9	102	466.380088	456.8146256	409.0157201	370.458872	M8_p20	-0.657142857	-0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.522	368	0	0	NA	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	2	1	sgMsh2	cell line
chr9	38848204	38848204	C	T	ENSMUST00000217350.1	5	ENSMUSG00000062103	missense	A/V	30	Olfr924	ENSMUST00000217350.1:c.89C>T	ENSMUSP00000149849.1:p.Ala30Val	H-2-Kb	8	11	1	VIYVITVV	AIYVITVV	NetMHC	202.6	1252.59	6.183	346	0.266	217.935	913.276	4.191	1252.59	202.6	849.9	203.2	976.6523514	259.2626764	797.5170931	232.6697911	M8_p20	2.8	2.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.279	346	0	0	NA	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr9	39018999	39018999	G	T	ENSMUST00000214410.1	5	ENSMUSG00000058820	missense	L/I	181	Olfr146	ENSMUST00000214410.1:c.541C>A	ENSMUSP00000149294.1:p.Leu181Ile	H-2-Kb	8	4	8	INHYFCDI	INHYFCDL	NetMHCpan	90.9	29.4	0.323	246	0.171	313.213	50.321	0.161	26.98	217.41	29.4	90.9	71.90183929	466.380088	71.24263926	409.0157201	M8_p20	-0.242857143	-0.242857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	246	0	0	NA	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	0.904018425	sgMsh2	cell line
chr9	88476836	88476836	A	G	ENSMUST00000173801.7	1	ENSMUSG00000032423	missense	F/L	207	Syncrip	ENSMUST00000173801.7:c.619T>C	ENSMUSP00000133649.1:p.Phe207Leu	H-2-Kb	8	5	7	LNRGYALV	LNRGYAFV	NetMHC	300.95	433.7	1.441	65	0.292	353.739	317.073	0.896	433.7	300.95	347.9	331	249.8848923	376.4783444	286.246378	409.9585987	M8_p20	0.014285714	0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.266	65	0	0	NA	9qE3.1	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr9	66451385	66451385	G	T	ENSMUST00000042824.12	5	ENSMUSG00000038664	missense	G/W	2583	Herc1	ENSMUST00000042824.12:c.7747G>T	ENSMUSP00000044801.6:p.Gly2583Trp	H-2-Kb	8	8	4	RALWLADL	RALGLADL	NetMHC	409.75	2553.6	6.232	220	0.232	480.118	1904.439	3.967	2553.6	409.75	2855.4	473	1212.662646	487.2367077	1255.278239	549.2119775	M8_p20	1.514285714	1.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.236	220	0	0	NA	9qC	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr9	41969739	41969739	T	G	ENSMUST00000060989.8	1	ENSMUSG00000049313	missense	K/T	2162	Sorl1	ENSMUST00000060989.8:c.6485A>C	ENSMUSP00000058613.8:p.Lys2162Thr	H-2-Kb	9	7	5	ILYTTHRRL	ILYTKHRRL	NetMHCpan	38.5	39.5	1.026	44	0.364	207.103	89.609	0.433	28.42	39.88	39.5	38.5	191.9154771	390.9399022	139.7172407	374.3260056	M8_p20	-1.585714286	-0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.363	44	0	0	NA	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	2	1	sgMsh2	cell line
chr9	39078200	39078200	A	G	ENSMUST00000056499.3	NA	ENSMUSG00000048501	missense	F/L	182	Olfr938	ENSMUST00000056499.3:c.544T>C	ENSMUSP00000055053.2:p.Phe182Leu	H-2-Kb	9	3	9	INHYFCDLL	INHYFCDLF	NetMHC	40.99	129.13	3.15	199	0.181	94.887	238.502	2.514	129.13	40.99	365.4	57	223.9288243	132.7730709	253.0754397	146.3019114	M8_p20	0.7	0.7	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.184	199	0	0	NA	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	0.831696951	sgMsh2	cell line
chr8	124028933	124028933	T	C	ENSMUST00000034457.8	1	ENSMUSG00000031976	missense	Y/H	460	Urb2	ENSMUST00000034457.8:c.1378T>C	ENSMUSP00000034457.8:p.Tyr460His	H-2-Kb	9	6	6	TVFQTHAKL	TVFQTYAKL	NetMHC	42.12	10.72	0.255	173	0.133	141.749	43.932	0.31	10.72	42.12	14.2	48.4	86.71814915	303.4659719	73.66310144	235.0985768	M8_p20	-0.414285714	0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.162	173	0	0	NA	8qE2	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	0.732254925	sgMsh2	cell line
chr9	71725634	71725634	T	G	ENSMUST00000072899.8	5	ENSMUSG00000032232	missense	N/T	145	Cgnl1	ENSMUST00000072899.8:c.434A>C	ENSMUSP00000072672.2:p.Asn145Thr	H-2-Kb	9	10	2	LTFQRHPEL	LNFQRHPEL	NetMHCpan	36.8	28.1	0.764	69	0.275	90.799	70.924	0.781	73.26	81.31	28.1	36.8	84.74420308	133.0791444	68.58829388	100.2882377	M8_p20	-1.385714286	-0.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.281	69	0	0	NA	9qD	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr9	96297705	96297705	G	GA	ENSMUST00000165768.3	1	ENSMUSG00000032411	FS	E/EX	140	Tfdp2	ENSMUST00000165768.3:c.426dup	ENSMUSP00000128260.2:p.Glu143ArgfsTer47	H-2-Kb	9	20	0	PAYQFCSGM	NA	NetMHC	85.15	NA	NA	102	0.304	106.96	NA	NA	NA	85.15	NA	165.8	NA	88.53398242	NA	125.3862749	M8_p20	0.171428571	0.171428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.328	102	0	0	NA	9qE3.3	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	2	1	sgMsh2	cell line
chr9	38606767	38606767	T	C	ENSMUST00000217057.1	3	ENSMUSG00000047050	missense	F/L	101	Olfr914	ENSMUST00000217057.1:c.301T>C	ENSMUSP00000150241.1:p.Phe101Leu	H-2-Kb	9	8	4	MTQLYFFGF	MTQFYFFGF	NetMHC	185.46	228.71	1.233	271	0.273	328.692	292.694	0.89	228.71	185.46	277.7	400.9	307.6876041	286.4903513	352.5737704	370.8941642	M8_p20	1	1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.271	271	0	0	NA	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr9	38606767	38606767	T	C	ENSMUST00000217057.1	3	ENSMUSG00000047050	missense	F/L	101	Olfr914	ENSMUST00000217057.1:c.301T>C	ENSMUSP00000150241.1:p.Phe101Leu	H-2-Kb	9	9	3	TQLYFFGFF	TQFYFFGFF	NetMHC	202.41	67	0.331	271	0.273	276.017	89.504	0.324	67	202.41	59.3	241.4	114.0538632	319.9705442	112.0082469	310.6347231	M8_p20	1.9	1.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.271	271	0	0	NA	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr9	80136750	80136750	GA	G	ENSMUST00000165607.8	1	ENSMUSG00000034252	FS	K/X	888	Senp6	ENSMUST00000165607.8:c.2672del	ENSMUSP00000126777.2:p.Asn891IlefsTer44	H-2-Kb	9	47	0	ASVLYIIQM	NA	NetMHC	227.71	NA	NA	122	0.262	259.534	NA	NA	NA	227.71	NA	259.5	NA	350.0338139	NA	259.5673122	M8_p20	2.014285714	2.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.279	122	0	0	NA	9qE1	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr9	39258136	39258136	A	C	ENSMUST00000076903.2	NA	ENSMUSG00000063380	missense	C/G	182	Olfr945	ENSMUST00000076903.2:c.544T>G	ENSMUSP00000076169.2:p.Cys182Gly	H-2-Kb	9	5	7	VINHYFGDI	VINHYFCDI	NetMHC	248.12	402.57	1.622	368	0.522	313.678	336.411	1.072	402.57	248.12	262.7	378.9	382.9217191	379.4110717	289.9011913	248.4562923	M8_p20	-0.657142857	0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.522	368	0	0	NA	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	2	1	sgMsh2	cell line
chr9	39258136	39258136	A	C	ENSMUST00000076903.2	NA	ENSMUSG00000063380	missense	C/G	182	Olfr945	ENSMUST00000076903.2:c.544T>G	ENSMUSP00000076169.2:p.Cys182Gly	H-2-Kb	9	6	6	INHYFGDIL	INHYFCDIL	NetMHCpan	249.4	114.5	0.459	368	0.522	350.747	161.261	0.46	107.57	280.66	114.5	249.4	208.0223508	420.8332054	225.553723	456.2995075	M8_p20	0.385714286	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.522	368	0	0	NA	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	2	1	sgMsh2	cell line
chr9	39018999	39018999	G	T	ENSMUST00000214410.1	5	ENSMUSG00000058820	missense	L/I	181	Olfr146	ENSMUST00000214410.1:c.541C>A	ENSMUSP00000149294.1:p.Leu181Ile	H-2-Kb	9	4	8	INHYFCDII	INHYFCDLI	NetMHC	329.69	127.26	0.386	246	0.171	436.374	256.697	0.588	127.26	329.69	183.7	356.2	329.6932077	516.547186	338.259498	521.4948213	M8_p20	0.9	0.9	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	246	0	0	NA	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	0.904018425	sgMsh2	cell line
chr9	59324811	59324811	A	G	ENSMUST00000026265.7	1	ENSMUSG00000025235	missense	V/A	362	Bbs4	ENSMUST00000026265.7:c.1085T>C	ENSMUSP00000026265.6:p.Val362Ala	H-2-Kb	9	8	4	RAYAEAVRL	RAYVEAVRL	NetMHCpan	175.4	120.3	0.686	149	0.242	497.9	316.494	0.636	232.02	361.77	120.3	175.4	400.9682638	634.0302809	528.7495369	724.853099	M8_p20	0.328571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.237	149	0	0	NA	9qB	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chr9	43791318	43791318	A	G	ENSMUST00000034510.8	1	ENSMUSG00000032012	missense	M/V	121	Nectin1	ENSMUST00000034510.8:c.361A>G	ENSMUSP00000034510.7:p.Met121Val	H-2-Kb	9	11	1	VYICEFATF	MYICEFATF	SMM	270.464	693.601	2.564	67	0.209	347.49	830.945	2.391	915.58	403.74	908.1	406.8	693.6014622	270.4643321	753.7893549	291.2393144	M8_p20	1.457142857	1.571428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.238	67	0	0	NA	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	sgMsh2	cell line
chrX	133588496	133588496	A	G	ENSMUST00000149154.7	1	ENSMUSG00000051323	missense	M/T	977	Pcdh19	ENSMUST00000149154.7:c.2930T>C	ENSMUSP00000116886.1:p.Met977Thr	H-2-Db	9	5	7	WMPRNPTPT	WMPRNPMPT	NetMHC	233.44	1377.14	5.899	66	0.53	363.988	1119.682	3.076	1377.14	233.44	3001.1	2034.1	862.223787	394.1123099	717.0839465	333.8643134	M8_p20	-2.028571429	-1.557142857	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.514	66	0	0	NA	XqE3	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	sgMsh2	cell line
chr9	106155782	106155782	A	G	ENSMUST00000036382.12	1	ENSMUSG00000020258	missense	V/A	344	Glyctk	ENSMUST00000036382.12:c.1031T>C	ENSMUSP00000047761.6:p.Val344Ala	H-2-Kb	8	10	2	RAARFYGL	RVARFYGL	NetMHCpan	27.8	30.5	1.097	44	0.114	63.802	70.784	1.109	50	37.5	30.5	27.8	91.56721386	90.10315536	110.8510982	119.8781411	M8_p20	0.571428571	0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2	2	0.165	44	0	0	NA	9qF1	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	0.745815201	sgMsh2	cell line
chrX	101258606	101258606	AG	A	ENSMUST00000062000.5	1	ENSMUSG00000042903	FS	G/X	295	Foxo4	ENSMUST00000062000.5:c.889del	ENSMUSP00000059420.4:p.Val297SerfsTer9	H-2-Kb	8	7	7	SSYAGGSL	SSYAGGVP	NetMHC	51.75	25173.44	486.443	32	0.5	64.29	6675.505	103.834	25173.44	51.75	10455.4	66.1	2855.880296	68.82401428	2895.609548	62.47985313	M8_p20	0.271428571	0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.483	32	0	0	NA	XqD	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	sgMsh2	cell line
chr9	106155782	106155782	A	G	ENSMUST00000036382.12	1	ENSMUSG00000020258	missense	V/A	344	Glyctk	ENSMUST00000036382.12:c.1031T>C	ENSMUSP00000047761.6:p.Val344Ala	H-2-Kb	8	11	1	AARFYGLL	VARFYGLL	NetMHCpan	46.2	13.4	0.29	44	0.114	94.506	24.316	0.257	14.69	61.15	13.4	46.2	33.94220093	127.8615603	42.43654321	145.4587999	M8_p20	0.857142857	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2	2	0.165	44	0	0	NA	9qF1	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	0.745815201	sgMsh2	cell line
chrX	154948718	154948718	C	A	ENSMUST00000079867.5	NA	ENSMUSG00000094196	missense	R/M	263	Magea3	ENSMUST00000079867.5:c.788G>T	ENSMUSP00000078793.4:p.Arg263Met	H-2-Kb	8	4	8	YGFLWGPM	YGFLWGPR	NetMHCpan	35.4	3297.2	93.141	169	0.562	101.633	2138.052	21.037	6921.5	82	3297.2	35.4	941.3258822	168.9429215	978.9037676	121.2662646	M8_p20	0.742857143	0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.538	169	0	0	NA	XqF3	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	sgMsh2	cell line
chrX	13665387	13665387	T	C	ENSMUST00000053659.1	1	ENSMUSG00000047678	missense	V/A	58	Gpr82	ENSMUST00000053659.1:c.173T>C	ENSMUSP00000062535.1:p.Val58Ala	H-2-Kb	8	8	4	ANLATANL	ANLVTANL	NetMHC	110.98	65.42	0.589	171	0.444	127.103	105.176	0.827	65.42	110.98	97.7	151.4	116.611129	121.5458122	112.6522836	132.6600022	M8_p20	0.5	0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.446	171	0	0	NA	XqA1.1	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	sgMsh2	cell line
chr9	108052065	108052065	A	G	ENSMUST00000162355.7	1	ENSMUSG00000041528	missense	V/A	1271	Rnf123	ENSMUST00000162355.7:c.3812T>C	ENSMUSP00000125745.1:p.Val1271Ala	H-2-Kb	8	8	4	ISAAFQPC	ISAVFQPC	SMM	176.092	168.943	0.959	173	0.185	417.672	294.935	0.706	357.2	561.35	396.1	585.7	168.9429215	176.0921516	232.6697911	273.9933359	M8_p20	0.428571429	0.714285714	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.176	173	0	0	NA	9qF1	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	0.795536214	sgMsh2	cell line
chr9	106155782	106155782	A	G	ENSMUST00000036382.12	1	ENSMUSG00000020258	missense	V/A	344	Glyctk	ENSMUST00000036382.12:c.1031T>C	ENSMUSP00000047761.6:p.Val344Ala	H-2-Kb	9	10	2	RAARFYGLL	RVARFYGLL	NetMHC	16.87	23.3	1.381	44	0.114	71.279	81.97	1.15	23.3	16.87	21.8	17.5	140.6403699	125.0575741	181.6561058	157.1267038	M8_p20	0.857142857	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2	2	0.165	44	0	0	NA	9qF1	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	0.745815201	sgMsh2	cell line
chrX	107102671	107102671	C	T	ENSMUST00000053375.3	1	ENSMUSG00000050921	missense	H/Y	71	P2ry10	ENSMUST00000053375.3:c.211C>T	ENSMUSP00000061296.3:p.His71Tyr	H-2-Kb	9	9	3	LAYILSLPL	LAHILSLPL	NetMHCpan	55.6	631.2	11.353	224	0.071	87.353	597.581	6.841	896.1	83.9	631.2	55.6	516.547186	90.8050496	563.9622051	103.8125837	M8_p20	1.742857143	2.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.076	224	0	0	NA	XqD	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	sgMsh2	cell line
chrX	86747655	86747655	G	A	ENSMUST00000113966.7	5	ENSMUSG00000052372	missense	P/S	560	Il1rapl1	ENSMUST00000113966.7:c.1678C>T	ENSMUSP00000109599.1:p.Pro560Ser	H-2-Kb	9	10	2	MSFKRIEPI	MPFKRIEPI	NetMHCpan	58.3	2180.6	37.403	83	0.47	177.366	2262.711	12.757	4631.31	173.91	2180.6	58.3	2344.822647	233.4049166	1946.480243	180.8214719	M8_p20	-0.242857143	-0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.478	83	0	0	NA	XqC1	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	sgMsh2	cell line
chrX	9849913	9849913	T	C	ENSMUST00000057113.2	NA	ENSMUSG00000048994	missense	S/P	55	H2al3	ENSMUST00000057113.2:c.163T>C	ENSMUSP00000052025.1:p.Ser55Pro	H-2-Kb	9	6	6	LNYVTPSIL	LNYVTSSIL	SMM	217.325	118.334	0.545	173	0.486	286.985	138.425	0.482	151.65	320.37	125.2	253.6	118.334124	217.325156	242.8007366	383.9281887	M8_p20	1.157142857	1.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.521	173	0	0	NA	XqA1.1	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	sgMsh2	cell line
chrX	101673545	101673545	GA	G	ENSMUST00000044475.4	1	ENSMUSG00000034160	FS	K/X	757	Ogt	ENSMUST00000044475.4:c.2271del	ENSMUSP00000045409.4:p.Lys757AsnfsTer23	H-2-Kb	9	22	0	VTQLLICPL	NA	NetMHCpan	324.4	NA	NA	82	0.463	478.008	NA	NA	NA	401.25	NA	324.4	NA	554.7662088	NA	602.9065471	M8_p20	1.9	2.085714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.468	82	0	0	NA	XqD	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	sgMsh2	cell line
chr1	10209499	10209499	T	G	ENSMUST00000088615.10	5	ENSMUSG00000067851	missense	E/A	281	Arfgef1	ENSMUST00000088615.10:c.842A>C	ENSMUSP00000085986.4:p.Glu281Ala	H-2-Db	9	10	2	TAPENGSDI	TEPENGSDI	NetMHC	68.02	9711.11	142.768	199	0.276	210.223	7893.571	37.549	9711.11	68.02	9883.5	180.8	6076.031266	286.8269798	4462.415444	239.6458982	M8	-1.257142857	-1.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.268	199	220	54	0.245454545	1qA2	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr1	165539831	165539831	A	G	ENSMUST00000027852.14	1	ENSMUSG00000026567	missense	T/A	557	Adcy10	ENSMUST00000027852.14:c.1669A>G	ENSMUSP00000027852.8:p.Thr557Ala	H-2-Db	9	4	8	SFHQNFYAI	SFHQNFYTI	SMM	105.104	62.176	0.592	143	0.28	167.108	96.911	0.58	73.99	141.21	379.5	647.3	62.17560216	105.1041828	119.8312253	193.0056399	M8	-0.342857143	-0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.3	143	0	0	NA	1qH2.3	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr1	85579187	85579187	CT	C	ENSMUST00000093508.6	1	ENSMUSG00000070034	FS	K/X	385	Sp110	ENSMUST00000093508.6:c.1154del	ENSMUSP00000091226.6:p.Lys385SerfsTer13	H-2-Db	9	11	1	SAFRMRQEI	NA	SMMPMBEC	212.114	NA	NA	139	0.194	246.936	NA	NA	NA	356.88	NA	263.4	NA	230.4729708	NA	212.1143253	M8	-0.971428571	-0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.183	139	0	0	NA	1qC5	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.87580148	sgMsh2	cell line
chr1	127412243	127412243	G	T	ENSMUST00000038361.10	1	ENSMUSG00000036155	missense	V/L	454	Mgat5	ENSMUST00000038361.10:c.1360G>T	ENSMUSP00000038359.4:p.Val454Leu	H-2-Kb	8	4	8	QSLVYGKL	QSLVYGKV	NetMHC	15.26	75.8	4.967	145	0.193	52.362	246.565	4.709	75.8	15.26	265.7	39.6	232.6697911	65.12383991	260.4593785	71.90183929	M8	0.771428571	0.771428571	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.195	145	54	11	0.203703704	1qE3	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.933231086	sgMsh2	cell line
chr1	128364313	128364313	A	G	ENSMUST00000027602.14	1	ENSMUSG00000026356	missense	V/A	476	Dars	ENSMUST00000027602.14:c.1427T>C	ENSMUSP00000027602.8:p.Val476Ala	H-2-Kb	8	11	1	ATMLFLGL	VTMLFLGL	NetMHCpan	13.4	5.5	0.41	135	0.215	28.635	8.869	0.31	5.27	15.32	5.5	13.4	14.47904774	54.54312289	12.23883275	41.95077612	M8	2.142857143	2.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.218	135	228	51	0.223684211	1qE3	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr1	84912361	84912361	C	A	ENSMUST00000027422.6	1	ENSMUSG00000026220	missense	A/S	408	Slc16a14	ENSMUST00000027422.6:c.1222G>T	ENSMUSP00000027422.5:p.Ala408Ser	H-2-Kb	8	6	6	LMHTYSSL	LMHTYASL	NetMHC	32.78	13.28	0.405	121	0.24	74.006	33.853	0.457	13.28	32.78	20.2	35.1	63.64144033	143.7937467	47.50507412	112.911974	M8	-0.157142857	-0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.249	121	0	0	NA	1qC5	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr1	88233353	88233353	T	G	ENSMUST00000113130.7	5	ENSMUSG00000079429	missense	L/R	231	Mroh2a	ENSMUST00000113130.7:c.692T>G	ENSMUSP00000108755.1:p.Leu231Arg	H-2-Kb	8	7	5	VQFYRRHL	VQFYLRHL	NetMHC	36.12	18.54	0.513	466	0.071	95.506	36.489	0.382	18.54	36.12	19.8	52.1	53.17897962	156.221211	53.17897962	138.9120754	M8	-1.485714286	-1.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.075	466	0	0	NA	1qD	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.358935033	sgMsh2	cell line
chr1	152855898	152855898	T	C	ENSMUST00000043560.14	1	ENSMUSG00000042772	missense	R/G	379	Smg7	ENSMUST00000043560.14:c.1135A>G	ENSMUSP00000041241.8:p.Arg379Gly	H-2-Kb	8	5	7	VSMDWLGL	VSMDWLRL	NetMHCpan	34.7	24.7	0.712	214	0.243	70.049	45.03	0.643	38.45	50.82	24.7	34.7	69.30107956	116.611129	51.61072977	89.27708467	M8	0.557142857	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.245	214	68	14	0.205882353	1qG3	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr1	132014588	132014588	A	G	ENSMUST00000086556.11	1	ENSMUSG00000026436	missense	Y/C	66	Elk4	ENSMUST00000086556.11:c.197A>G	ENSMUSP00000083743.5:p.Tyr66Cys	H-2-Kb	8	6	6	RALRYCYV	RALRYYYV	NetMHC	53.18	33.42	0.628	68	0.294	95.601	68.626	0.718	33.42	53.18	49.2	71.6	88.05215715	119.6024291	102.2680559	132.3548926	M8	0.742857143	0.742857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.278	68	75	18	0.24	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr1	58595689	58595689	A	T	ENSMUST00000027193.8	1	ENSMUSG00000026032	missense	I/F	67	Ndufb3	ENSMUST00000027193.8:c.199A>T	ENSMUSP00000027193.8:p.Ile67Phe	H-2-Kb	8	9	3	GNFTFPSV	GNITFPSV	NetMHCpan	49.1	289.6	5.898	103	0.165	107.5	583.368	5.427	915.1	105.67	289.6	49.1	648.2462304	133.5795574	518.4895408	109.3301641	M8	0.457142857	0.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.169	103	311	97	0.311897106	1qC1.3	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.808800274	sgMsh2	cell line
chr1	25131380	25131380	C	T	ENSMUST00000151309.7	1	ENSMUSG00000033569	missense	A/T	946	Adgrb3	ENSMUST00000151309.7:c.2836G>A	ENSMUSP00000116231.1:p.Ala946Thr	H-2-Kb	8	11	1	TFLHFFFL	AFLHFFFL	SMM	29.359	37.046	1.262	126	0.27	91.507	114.731	1.254	197.19	183.87	187.8	150.3	37.0458872	29.35891489	41.66198901	32.71447838	M8	2.228571429	2.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.261	126	0	0	NA	1qA5	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr1	151351713	151351713	T	C	ENSMUST00000023918.12	1	ENSMUSG00000023150	missense	Y/H	91	Ivns1abp	ENSMUST00000023918.12:c.271T>C	ENSMUSP00000023918.6:p.Tyr91His	H-2-Kb	8	5	7	VLLNYAHT	VLLNYAYT	SMMPMBEC	192.637	198.034	1.028	174	0.247	277.822	339.303	1.221	371.18	233.73	1146.3	1299.8	307.4255792	321.9141004	198.0341096	192.6371303	M8	0.1	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.261	174	271	60	0.221402214	1qG1	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr1	25131380	25131380	C	T	ENSMUST00000151309.7	1	ENSMUSG00000033569	missense	A/T	946	Adgrb3	ENSMUST00000151309.7:c.2836G>A	ENSMUSP00000116231.1:p.Ala946Thr	H-2-Kb	8	10	2	TTFLHFFF	TAFLHFFF	NetMHCpan	114.1	115.4	1.011	126	0.27	226.626	275.124	1.214	205.31	235.11	115.4	114.1	389.7086091	252.1970487	344.9371732	218.1423563	M8	1.585714286	1.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.261	126	0	0	NA	1qA5	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr1	155293260	155293260	T	C	ENSMUST00000027741.11	1	ENSMUSG00000026469	missense	D/G	506	Xpr1	ENSMUST00000027741.11:c.1517A>G	ENSMUSP00000027741.5:p.Asp506Gly	H-2-Kb	8	11	1	GTVVFFYL	DTVVFFYL	SMMPMBEC	92.628	163.584	1.766	122	0.246	199.212	361.021	1.812	559.15	248.2	555.8	308.4	166.241711	150.2242346	163.5836898	92.62751223	M8	2.257142857	2.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.23	122	86	15	0.174418605	1qG3	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr1	123384300	123384300	C	A	ENSMUST00000112606.7	1	ENSMUSG00000036815	missense	G/V	453	Dpp10	ENSMUST00000112606.7:c.1358G>T	ENSMUSP00000108225.1:p.Gly453Val	H-2-Kb	8	7	5	SSPQVRQL	SSPQGRQL	SMM	245.89	704.271	2.864	186	0.247	327.259	1194.096	3.649	1683.92	351.31	3489.5	1309.8	704.2713151	245.8895091	636.4144033	303.2075422	M8	-0.842857143	-0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	186	0	0	NA	1qE2.3	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr1	154633618	154633618	A	G	ENSMUST00000187541.6	1	ENSMUSG00000004110	missense	L/P	297	Cacna1e	ENSMUST00000187541.6:c.890T>C	ENSMUSP00000140937.1:p.Leu297Pro	H-2-Kb	8	8	4	DNIPFAVL	DNILFAVL	SMM	178.131	93.485	0.525	96	0.24	412.973	165.678	0.401	220.76	608.34	374.2	572	93.48458404	178.1312026	110.5961477	253.9451951	M8	1.714285714	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.238	96	0	0	NA	1qG3	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr1	151351713	151351713	T	C	ENSMUST00000023918.12	1	ENSMUSG00000023150	missense	Y/H	91	Ivns1abp	ENSMUST00000023918.12:c.271T>C	ENSMUSP00000023918.6:p.Tyr91His	H-2-Kb	9	7	5	LNYAHTAQL	LNYAYTAQL	NetMHCpan	10.4	5.2	0.5	174	0.247	31.415	21.341	0.679	6.52	17.41	5.2	10.4	48.31811688	60.27122243	36.16179668	45.42030017	M8	-0.185714286	-0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.261	174	271	60	0.221402214	1qG1	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr1	25131380	25131380	C	T	ENSMUST00000151309.7	1	ENSMUSG00000033569	missense	A/T	946	Adgrb3	ENSMUST00000151309.7:c.2836G>A	ENSMUSP00000116231.1:p.Ala946Thr	H-2-Kb	9	10	2	TTFLHFFFL	TAFLHFFFL	NetMHCpan	14.2	13.4	0.944	126	0.27	31.34	25.255	0.806	18.88	19.8	13.4	14.2	31.63078717	43.5622196	33.20855664	42.87952838	M8	2.228571429	2.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.261	126	0	0	NA	1qA5	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr1	88233353	88233353	T	G	ENSMUST00000113130.7	5	ENSMUSG00000079429	missense	L/R	231	Mroh2a	ENSMUST00000113130.7:c.692T>G	ENSMUSP00000108755.1:p.Leu231Arg	H-2-Kb	9	6	6	TVQFYRRHL	TVQFYLRHL	NetMHC	126.67	85.86	0.678	466	0.071	471.067	257.259	0.546	85.86	126.67	51.1	243.5	428.6570788	722.9528931	435.7626466	698.6344547	M8	-1.485714286	-1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.075	466	0	0	NA	1qD	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.358935033	sgMsh2	cell line
chr1	128364313	128364313	A	G	ENSMUST00000027602.14	1	ENSMUSG00000026356	missense	V/A	476	Dars	ENSMUST00000027602.14:c.1427T>C	ENSMUSP00000027602.8:p.Val476Ala	H-2-Kb	9	6	6	IGLERATML	IGLERVTML	NetMHCpan	169.6	134.8	0.795	135	0.215	303	226.99	0.749	136.11	195.56	134.8	169.6	457.2039776	492.1641774	317.8703353	410.4403034	M8	0.371428571	0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.218	135	228	51	0.223684211	1qE3	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr1	85579187	85579187	CT	C	ENSMUST00000093508.6	1	ENSMUSG00000070034	FS	K/X	385	Sp110	ENSMUST00000093508.6:c.1154del	ENSMUSP00000091226.6:p.Lys385SerfsTer13	H-2-Kb	9	11	1	SAFRMRQEI	NA	NetMHC	222.54	NA	NA	139	0.194	380.963	NA	NA	NA	222.54	NA	325.3	NA	436.6264089	NA	527.5334467	M8	-0.971428571	-0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.183	139	0	0	NA	1qC5	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.87580148	sgMsh2	cell line
chr1	173270231	173270231	A	G	ENSMUST00000213420.1	5	ENSMUSG00000049605	missense	S/G	19	Olfr418	ENSMUST00000213420.1:c.55A>G	ENSMUSP00000150427.1:p.Ser19Gly	H-2-Kb	9	4	8	FVFQGFSGF	FVFQGFSSF	NetMHCpan	196.3	191.2	0.974	263	0.091	310.099	338.26	1.091	338.26	307.51	191.2	196.3	350.8407252	312.6871254	338.259498	332.8511027	M8	0.471428571	1.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.083	263	0	0	NA	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.397221436	sgMsh2	cell line
chr1	127412243	127412243	G	T	ENSMUST00000038361.10	1	ENSMUSG00000036155	missense	V/L	454	Mgat5	ENSMUST00000038361.10:c.1360G>T	ENSMUSP00000038359.4:p.Val454Leu	H-2-Kb	9	6	6	LVYGKLDSF	LVYGKVDSF	SMM	278.042	542.138	1.95	145	0.193	372.202	726.824	1.953	911.51	463.7	1434.9	1078.9	542.1381881	278.0417415	480.0096849	280.704904	M8	-0.471428571	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.195	145	54	11	0.203703704	1qE3	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.933231086	sgMsh2	cell line
chr1	150808584	150808584	C	A	ENSMUST00000074783.11	5	ENSMUSG00000066842	missense	G/C	412	Hmcn1	ENSMUST00000074783.11:c.1234G>T	ENSMUSP00000074340.5:p.Gly412Cys	H-2-Kb	9	5	7	TGYDKDCYL	TGYDKDGYL	SMMPMBEC	281.352	241.129	0.857	129	0.171	397.422	570.225	1.435	814.53	465.91	815.3	889.7	325.9192408	328.9349344	241.1293081	281.3519957	M8	-1.028571429	-1.028571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.191	129	0	0	NA	1qG1	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.914087884	sgMsh2	cell line
chr10	68778643	68778643	T	C	ENSMUST00000080995.7	1	ENSMUSG00000060044	missense	L/P	296	Tmem26	ENSMUST00000080995.7:c.887T>C	ENSMUSP00000079789.6:p.Leu296Pro	H-2-Db	9	5	7	FAVKNSPVM	FAVKNSLVM	NetMHC	8.71	9.25	1.062	176	0.193	25.374	27.679	1.091	9.25	8.71	9.8	10.7	46.62512402	43.51309752	45.5585612	40.04700113	M8	0.071428571	0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.19	176	0	0	NA	10qB5.3	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.909302083	sgMsh2	cell line
chr10	68778643	68778643	T	C	ENSMUST00000080995.7	1	ENSMUSG00000060044	missense	L/P	296	Tmem26	ENSMUST00000080995.7:c.887T>C	ENSMUSP00000079789.6:p.Leu296Pro	H-2-Db	11	5	7	FAVKNSPVMAL	FAVKNSLVMAL	NetMHCpan	139.4	136.7	0.981	176	0.193	479.924	423.713	0.883	274.55	315.59	136.7	139.4	572.8751711	644.2582669	2605.313561	2641.557083	M8	0.828571429	0.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.19	176	0	0	NA	10qB5.3	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.909302083	sgMsh2	cell line
chr10	50754122	50754122	G	T	ENSMUST00000035606.9	5	ENSMUSG00000038774	missense	S/I	1769	Ascc3	ENSMUST00000035606.9:c.5306G>T	ENSMUSP00000036726.8:p.Ser1769Ile	H-2-Kb	8	8	4	MNPIYYSL	MNPSYYSL	NetMHC	10.83	12.27	1.133	153	0.163	32.613	36.465	1.118	12.27	10.83	28.9	21.7	44.02911945	43.52512229	62.62388407	64.23030732	M8	-0.028571429	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.177	153	101	11	0.108910891	10qB3	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.847086678	sgMsh2	cell line
chr10	129501829	129501829	T	C	ENSMUST00000218901.1	NA	ENSMUSG00000044025	missense	F/S	315	Olfr790	ENSMUST00000218901.1:c.944T>C	ENSMUSP00000151759.1:p.Phe315Ser	H-2-Kb	8	13	2	ISFSSKNL	IFFSSKNL	NetMHCpan	18.5	115.8	6.259	101	0.218	19.094	83.126	4.354	110.95	18.52	115.8	18.5	45.89231861	19.66708524	55.30189331	20.68902384	M8	-0.457142857	-0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.202	101	0	0	NA	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.966731689	sgMsh2	cell line
chr10	127170070	127170070	CT	C	ENSMUST00000006914.10	1	ENSMUSG00000006731	FS	F/X	302	B4galnt1	ENSMUST00000006914.10:c.907del	ENSMUSP00000006914.9:p.Tyr303ThrfsTer6	H-2-Kb	8	6	7	ASIRRFTL	ASIRRFYP	NetMHC	29	3440.11	118.624	132	0.25	210.968	4453.498	21.11	3440.11	29	1848.8	57.4	6176.465217	435.2512229	5466.885777	364.5356443	M8	0.085714286	0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.26	132	64	2	0.03125	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr10	129626025	129626025	A	G	ENSMUST00000204979.2	2	ENSMUSG00000095002	missense	L/P	12	Olfr798	ENSMUST00000204979.2:c.35T>C	ENSMUSP00000144716.1:p.Leu12Pro	H-2-Kb	8	5	7	SVSEFIPL	SVSEFILL	NetMHC	38.39	159.69	4.16	138	0.254	72.402	215.586	2.978	159.69	38.39	96.3	42.3	271.4813499	102.5038081	318.9627742	115.8083836	M8	1.342857143	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.244	138	0	0	NA	10qD3	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	sgMsh2	cell line
chr10	40227566	40227566	T	G	ENSMUST00000183309.7	1	ENSMUSG00000038510	missense	S/R	197	Rpf2	ENSMUST00000183309.7:c.589A>C	ENSMUSP00000138581.1:p.Ser197Arg	H-2-Kb	8	7	5	VYFRRYKL	VYFRSYKL	NetMHC	57.17	143.56	2.511	169	0.343	156.487	155.477	0.994	143.56	57.17	65	69.9	167.3940435	272.7344509	189.1211064	243.0748352	M8	-1.271428571	-1.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.347	169	114	22	0.192982456	10qB1	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr10	81509375	81509375	A	G	ENSMUST00000043709.7	1	ENSMUSG00000034792	missense	W/R	219	Gna15	ENSMUST00000043709.7:c.655T>C	ENSMUSP00000049175.7:p.Trp219Arg	H-2-Kb	8	11	1	RIHCFENV	WIHCFENV	SMM	346.529	467.455	1.349	142	0.204	369.99	655.698	1.772	843.94	365.18	1509.8	374.8	467.4552051	346.5293309	451.5855118	392.4099402	M8	0.542857143	0.542857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.198	142	0	0	NA	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.947588487	sgMsh2	cell line
chr10	40227566	40227566	T	G	ENSMUST00000183309.7	1	ENSMUSG00000038510	missense	S/R	197	Rpf2	ENSMUST00000183309.7:c.589A>C	ENSMUSP00000138581.1:p.Ser197Arg	H-2-Kb	8	8	4	YFRRYKLL	YFRSYKLL	SMM	208.324	310.27	1.489	169	0.343	311.059	539.717	1.735	718.24	383.48	735.4	396.7	310.2701531	208.324333	361.1935614	238.6382195	M8	-0.542857143	-0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.347	169	114	22	0.192982456	10qB1	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr11	3186096	3186096	T	C	ENSMUST00000081318.12	1	ENSMUSG00000023764	missense	T/A	79	Sfi1	ENSMUST00000081318.12:c.235A>G	ENSMUSP00000080066.6:p.Thr79Ala	H-2-Kb	8	8	4	IRVAFGRV	IRVTFGRV	SMMPMBEC	296.989	270.857	0.912	1564	0.008	478.463	392.576	0.82	454.98	619.84	1433.1	1465	330.1718172	337.0854446	270.8569601	296.9887511	M8	0.514285714	0.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.009884	1564	10	0	0	11qA1	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.047302852	sgMsh2	cell line
chr10	130472110	130472110	CA	C	ENSMUST00000164227.3	5	ENSMUSG00000091511	FS	L/X	753	Vmn2r87	ENSMUST00000164227.3:c.2258del	ENSMUSP00000129215.2:p.Leu753TrpfsTer25	H-2-Kb	8	15	0	ASLWLSWL	NA	SMM	312.421	NA	NA	414	0.239	407.641	NA	NA	NA	717.62	NA	457.4	NA	312.4208431	NA	357.8821189	M8	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.236	414	0	0	NA	10qD3	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	sgMsh2	cell line
chr10	130472110	130472110	CA	C	ENSMUST00000164227.3	5	ENSMUSG00000091511	FS	L/X	753	Vmn2r87	ENSMUST00000164227.3:c.2258del	ENSMUSP00000129215.2:p.Leu753TrpfsTer25	H-2-Kb	8	19	0	LSWLGTFL	NA	SMMPMBEC	307.426	NA	NA	414	0.239	420.694	NA	NA	NA	1101.66	NA	318.1	NA	523.2870654	NA	307.4255792	M8	1.085714286	1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.236	414	0	0	NA	10qD3	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	sgMsh2	cell line
chr10	40227566	40227566	T	G	ENSMUST00000183309.7	1	ENSMUSG00000038510	missense	S/R	197	Rpf2	ENSMUST00000183309.7:c.589A>C	ENSMUSP00000138581.1:p.Ser197Arg	H-2-Kb	9	7	5	VYFRRYKLL	VYFRSYKLL	SMM	18.035	62.103	3.443	169	0.343	20.457	61.271	2.995	60.44	22.11	37.5	28	62.10263106	18.03474475	72.98775406	18.8039895	M8	-0.542857143	-0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.347	169	114	22	0.192982456	10qB1	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr10	129626025	129626025	A	G	ENSMUST00000204979.2	2	ENSMUSG00000095002	missense	L/P	12	Olfr798	ENSMUST00000204979.2:c.35T>C	ENSMUSP00000144716.1:p.Leu12Pro	H-2-Kb	9	4	8	TSVSEFIPL	TSVSEFILL	NetMHC	66.41	157	2.364	138	0.254	133.399	221.183	1.658	157	66.41	211.1	85.2	231.2650474	181.5975563	301.4740949	216.3963843	M8	1.342857143	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.244	138	0	0	NA	10qD3	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	sgMsh2	cell line
chr10	26271888	26271888	T	C	ENSMUST00000060716.5	5	ENSMUSG00000051354	missense	L/P	487	Samd3	ENSMUST00000060716.5:c.1460T>C	ENSMUSP00000057805.5:p.Leu487Pro	H-2-Kb	9	6	6	QTFNFPETL	QTFNFLETL	NetMHC	70.68	27.41	0.388	134	0.201	201.184	82.234	0.409	27.41	70.68	32	90.4	132.4677013	311.967965	170.7064772	407.6148523	M8	0.014285714	0.014285714	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.215	134	0	0	NA	10qA4	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr10	40227566	40227566	T	G	ENSMUST00000183309.7	1	ENSMUSG00000038510	missense	S/R	197	Rpf2	ENSMUST00000183309.7:c.589A>C	ENSMUSP00000138581.1:p.Ser197Arg	H-2-Kb	9	6	6	KVYFRRYKL	KVYFRSYKL	NetMHCpan	75.3	43.7	0.58	169	0.343	113.64	99.694	0.877	94.89	98.38	43.7	75.3	104.4984864	137.4390042	121.4087534	128.8991341	M8	-1.271428571	-1.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.347	169	114	22	0.192982456	10qB1	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr10	50754122	50754122	G	T	ENSMUST00000035606.9	5	ENSMUSG00000038774	missense	S/I	1769	Ascc3	ENSMUST00000035606.9:c.5306G>T	ENSMUSP00000036726.8:p.Ser1769Ile	H-2-Kb	9	7	5	IMNPIYYSL	IMNPSYYSL	NetMHCpan	106.8	122.5	1.147	153	0.163	213.697	155.456	0.727	120.49	198.25	122.5	106.8	188.4126249	229.1447967	231.3396105	261.9690589	M8	-0.028571429	0.457142857	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.177	153	101	11	0.108910891	10qB3	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.847086678	sgMsh2	cell line
chr10	127495153	127495153	TG	T	ENSMUST00000166820.7	5	ENSMUSG00000025404	FS	G/X	866	R3hdm2	ENSMUST00000166820.7:c.2600del	ENSMUSP00000126608.1:p.Gly867ValfsTer42	H-2-Kb	9	22	0	YWVSHYSTI	NA	SMM	111.201	NA	NA	65	0.231	203.294	NA	NA	NA	211.94	NA	419.1	NA	111.2013347	NA	194.6480243	M8	0.271428571	0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.25	65	70	1	0.014285714	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr10	121615116	121615116	CA	C	ENSMUST00000039810.7	5	ENSMUSG00000034667	FS	F/X	126	Xpot	ENSMUST00000039810.7:c.378del	ENSMUSP00000043488.7:p.Phe126LeufsTer9	H-2-Kb	9	8	4	KFFLTSSQL	NA	NetMHC	253.95	NA	NA	132	0.303	400.763	NA	NA	NA	253.95	NA	453.1	NA	348.4255546	NA	544.816184	M8	0.657142857	0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.308	132	335	36	0.107462687	10qD2	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr10	130472110	130472110	CA	C	ENSMUST00000164227.3	5	ENSMUSG00000091511	FS	L/X	753	Vmn2r87	ENSMUST00000164227.3:c.2258del	ENSMUSP00000129215.2:p.Leu753TrpfsTer25	H-2-Kb	9	9	3	GSWLWGASL	NA	NetMHCpan	270.2	NA	NA	414	0.239	374.862	NA	NA	NA	300.72	NA	270.2	NA	563.7804345	NA	449.0037829	M8	0.914285714	0.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.236	414	0	0	NA	10qD3	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	sgMsh2	cell line
chr10	76712320	76712320	T	C	ENSMUST00000001147.4	1	ENSMUSG00000001119	missense	K/R	634	Col6a1	ENSMUST00000001147.4:c.1901A>G	ENSMUSP00000001147.4:p.Lys634Arg	H-2-Kb	9	9	3	IARDFIIKV	IAKDFIIKV	NetMHCpan	291.7	586.8	2.012	133	0.308	419.706	907.096	2.161	1152.69	354.96	586.8	291.7	1099.284236	556.045077	714.9077416	484.4511598	M8	0.585714286	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.32	133	37	14	0.378378378	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr10	23897365	23897365	T	C	ENSMUST00000041416.7	1	ENSMUSG00000037440	missense	Y/H	97	Vnn1	ENSMUST00000041416.7:c.289T>C	ENSMUSP00000040599.7:p.Tyr97His	H-2-Kb	9	7	5	TIYPHLEEI	TIYPYLEEI	NetMHCpan	162.8	59.8	0.367	65	0.277	280.695	187.481	0.668	155.05	490.72	59.8	162.8	228.6177783	285.1740477	219.9125427	276.216743	M8	-0.685714286	-0.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.284	65	130	25	0.192307692	10qA4	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr10	130472110	130472110	CA	C	ENSMUST00000164227.3	5	ENSMUSG00000091511	FS	L/X	753	Vmn2r87	ENSMUST00000164227.3:c.2258del	ENSMUSP00000129215.2:p.Leu753TrpfsTer25	H-2-Kb	9	17	0	LWLSWLGTF	NA	SMM	245.533	NA	NA	414	0.239	456.634	NA	NA	NA	499.03	NA	2307.2	NA	245.5330734	NA	414.2380608	M8	1.085714286	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.236	414	0	0	NA	10qD3	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	sgMsh2	cell line
chr11	3186096	3186096	T	C	ENSMUST00000081318.12	1	ENSMUSG00000023764	missense	T/A	79	Sfi1	ENSMUST00000081318.12:c.235A>G	ENSMUSP00000080066.6:p.Thr79Ala	H-2-Kb	9	10	2	VAFGRVTPS	VTFGRVTPS	SMM	117.52	161.849	1.377	1564	0.008	440.424	554.824	1.26	1281.06	994.95	915	730.1	161.8489924	117.5195176	194.6480243	150.7474589	M8	-0.142857143	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.009884	1564	10	0	0	11qA1	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.047302852	sgMsh2	cell line
chr11	36008549	36008549	T	C	ENSMUST00000102801.7	5	ENSMUSG00000049336	missense	Y/C	2594	Tenm2	ENSMUST00000102801.7:c.7781A>G	ENSMUSP00000099865.1:p.Tyr2594Cys	H-2-Db	9	5	7	SVLNNACYL	SVLNNAYYL	NetMHCpan	29.4	22.1	0.752	186	0.199	58.079	41.36	0.712	16.41	35.69	22.1	29.4	60.62056782	80.46740575	79.53714539	98.30373071	M8	0.514285714	0.642857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.207	186	0	0	NA	11qA4	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.990660691	sgMsh2	cell line
chr11	43556667	43556667	G	T	ENSMUST00000050574.6	1	ENSMUSG00000044707	missense	R/L	59	Ccnjl	ENSMUST00000050574.6:c.176G>T	ENSMUSP00000058111.6:p.Arg59Leu	H-2-Db	9	9	3	SALHLAIYL	SARHLAIYL	NetMHC	172.76	6022.1	34.858	90	0.233	214.407	4374.189	20.401	6022.1	172.76	8244.8	501.5	2082.667788	190.8182902	2726.277127	237.9961875	M8	1.885714286	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.262	90	0	0	NA	11qB1.1	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr11	58757857	58757857	G	A	ENSMUST00000215071.1	5	ENSMUSG00000107677	missense	S/N	64	Olfr316	ENSMUST00000215071.1:c.191G>A	ENSMUSP00000151136.1:p.Ser64Asn	H-2-Db	9	7	5	YFLLNQLSI	YFLLSQLSI	SMM	53.164	1078.003	20.277	514	0.089	141.124	3409.713	24.161	8143.16	200.67	5247	352.8	1078.003076	53.16428776	1572.425217	81.57742638	M8	1.157142857	1.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.084	514	0	0	NA	11qB1.3	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.402007237	sgMsh2	cell line
chr11	58720856	58720856	C	T	ENSMUST00000214728.1	5	ENSMUSG00000108265	missense	S/N	64	Olfr318	ENSMUST00000214728.1:c.191G>A	ENSMUSP00000149053.1:p.Ser64Asn	H-2-Db	9	7	5	YFFLNQLSI	YFFLSQLSI	SMM	106.812	2165.808	20.277	485	0.029	221.224	3786.002	17.114	8823.11	457.1	4820.5	299.7	2165.808232	106.8119884	2751.503059	142.7479894	M8	1.014285714	1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.031	485	0	0	NA	11qB1.3	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.148359814	sgMsh2	cell line
chr11	69355786	69355786	T	C	ENSMUST00000151436.1	5	ENSMUSG00000018474	missense	T/A	96	Chd3	ENSMUST00000151436.1:c.284A>G	ENSMUSP00000118172.1:p.Thr96Ala	H-2-Db	9	3	9	YSYLLYIPA	YSYLLYIPT	SMM	342.468	921.765	2.692	59	0.237	452.354	1122.887	2.482	1324.01	527.51	4853.1	2169.7	921.7645465	342.468002	666.1468828	377.1985373	M8	1.385714286	1.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.254	59	1	0	0	11qB3	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr11	95969851	95969851	T	G	ENSMUST00000013559.2	1	ENSMUSG00000013415	missense	S/R	359	Igf2bp1	ENSMUST00000013559.2:c.1075A>C	ENSMUSP00000013559.2:p.Ser359Arg	H-2-Db	9	8	4	AAMRLQSHL	AAMSLQSHL	SMM	336.217	330.842	0.984	117	0.316	466.447	489.283	1.049	583.59	561.66	681.7	531.5	330.8415143	336.2172565	394.9753567	401.39319	M8	-0.357142857	0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.321	117	55	11	0.2	11qD	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr11	85559146	85559146	G	T	ENSMUST00000074875.10	5	ENSMUSG00000059439	missense	Q/H	683	Bcas3	ENSMUST00000074875.10:c.2049G>T	ENSMUSP00000074416.4:p.Gln683His	H-2-Kb	8	9	3	AVHYYQLL	AVQYYQLL	NetMHCpan	42.9	94.6	2.205	85	0.235	153.109	204.425	1.335	96.43	55.18	94.6	42.9	312.4208431	272.7344509	367.908651	251.0383085	M8	0.357142857	0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	85	30	8	0.266666667	11qC	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr11	66094123	66094123	T	C	ENSMUST00000080665.9	5	ENSMUSG00000056752	missense	R/G	1207	Dnah9	ENSMUST00000080665.9:c.3619A>G	ENSMUSP00000079494.3:p.Arg1207Gly	H-2-Kb	8	10	2	VGQQVAPL	VRQQVAPL	SMM	66.182	315.312	4.764	108	0.25	74.627	1070.287	14.342	1743.62	66.89	2996.9	350.4	315.3116375	66.18201718	396.9538331	82.36448742	M8	0.114285714	0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.268	108	0	0	NA	11qB3	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr11	85559146	85559146	G	T	ENSMUST00000074875.10	5	ENSMUSG00000059439	missense	Q/H	683	Bcas3	ENSMUST00000074875.10:c.2049G>T	ENSMUSP00000074416.4:p.Gln683His	H-2-Kb	8	10	2	VHYYQLLL	VQYYQLLL	NetMHCpan	38.9	33.6	0.864	85	0.235	127.51	109.377	0.858	75.62	91.06	33.6	38.9	143.1330745	163.9607892	225.2890066	276.528565	M8	0.3	0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	85	30	8	0.266666667	11qC	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr11	34688463	34688463	A	T	ENSMUST00000093193.11	1	ENSMUSG00000020143	missense	L/M	708	Dock2	ENSMUST00000093193.11:c.2122T>A	ENSMUSP00000090884.5:p.Leu708Met	H-2-Kb	8	9	3	ATMAYKKL	ATLAYKKL	NetMHCpan	62.7	80.7	1.287	248	0.169	117.441	94.582	0.805	84.03	96.29	80.7	62.7	118.7790917	204.0515979	105.1332282	138.5925865	M8	-0.328571429	-0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.171	248	0	0	NA	11qA4	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.818371875	sgMsh2	cell line
chr11	58720856	58720856	C	T	ENSMUST00000214728.1	5	ENSMUSG00000108265	missense	S/N	64	Olfr318	ENSMUST00000214728.1:c.191G>A	ENSMUSP00000149053.1:p.Ser64Asn	H-2-Kb	8	6	6	MYFFLNQL	MYFFLSQL	NetMHCpan	78.1	31.7	0.406	485	0.029	257.722	151.154	0.586	137.21	245.21	31.7	78.1	167.0090478	270.2340064	165.0973111	284.9311953	M8	0.7	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.031	485	0	0	NA	11qB1.3	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.148359814	sgMsh2	cell line
chr11	58757857	58757857	G	A	ENSMUST00000215071.1	5	ENSMUSG00000107677	missense	S/N	64	Olfr316	ENSMUST00000215071.1:c.191G>A	ENSMUSP00000151136.1:p.Ser64Asn	H-2-Kb	8	6	6	MYFLLNQL	MYFLLSQL	NetMHCpan	183.7	77.4	0.421	514	0.089	238.921	133.441	0.559	129.56	253.53	77.4	183.7	148.8469706	240.8463117	137.3219621	236.9954455	M8	0.842857143	0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.084	514	0	0	NA	11qB1.3	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.402007237	sgMsh2	cell line
chr11	72058021	72058021	G	A	ENSMUST00000075258.12	1	ENSMUSG00000040543	missense	R/W	769	Pitpnm3	ENSMUST00000075258.12:c.2305C>T	ENSMUSP00000074737.6:p.Arg769Trp	H-2-Kb	8	9	3	VVWHWQDL	VVRHWQDL	NetMHCpan	164	1200.7	7.321	122	0.213	222.002	907.754	4.089	1202.31	270.69	1200.7	164	614.8086937	260.4593785	592.570463	183.5439188	M8	-0.571428571	-0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.222	122	13	5	0.384615385	11qB4	chr11-69590981-82929860	4	4	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr11	57528173	57528173	A	T	ENSMUST00000020830.13	1	ENSMUSG00000020522	missense	D/V	53	Mfap3	ENSMUST00000020830.13:c.158A>T	ENSMUSP00000020830.7:p.Asp53Val	H-2-Kb	8	4	8	SAGSYSGV	SAGSYSGD	NetMHC	397.02	22519.42	56.721	151	0.192	446.118	12796.838	28.685	22519.42	397.02	29869.5	1113.8	3074.255792	459.9811133	2458.895091	432.2549746	M8	0.328571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.201	151	61	9	0.147540984	11qB1.3	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.961945888	sgMsh2	cell line
chr11	69912027	69912027	GC	G	ENSMUST00000061837.10	5	ENSMUSG00000047284	FS	P/X	1474	Neurl4	ENSMUST00000061837.10:c.4424del	ENSMUSP00000053235.4:p.Pro1475LeufsTer92	H-2-Kb	8	73	0	STSAHRNL	NA	SMM	185.242	NA	NA	39	0.231	376.656	NA	NA	NA	489.23	NA	973.3	NA	185.2422298	NA	264.0827294	M8	-1.014285714	-1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.256	39	23	4	0.173913043	11qB3	chr11-69590981-82929860	4	4	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr11	58665966	58665966	A	G	ENSMUST00000214392.1	5	ENSMUSG00000063549	missense	M/V	136	Olfr322	ENSMUST00000214392.1:c.406A>G	ENSMUSP00000150990.1:p.Met136Val	H-2-Kb	8	8	4	MVIVSPRL	MVIMSPRL	NetMHCpan	340.9	257.1	0.754	111	0.234	373.126	415.521	1.114	447.63	531.8	257.1	340.9	432.2549746	364.5356443	398.7860888	381.7156799	M8	1.4	1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.237	111	0	0	NA	11qB1.3	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr11	50237259	50237259	T	A	ENSMUST00000102772.3	1	ENSMUSG00000020377	missense	N/I	55	Ltc4s	ENSMUST00000102772.3:c.164A>T	ENSMUSP00000099833.3:p.Asn55Ile	H-2-Kb	8	11	1	ICSEYFPL	NCSEYFPL	SMMPMBEC	163.207	1944.196	11.912	54	0.352	262.12	3149.402	12.015	8197	536.95	3700.2	307.1	2598.603386	217.1400833	1944.195797	163.2074578	M8	0.271428571	0.371428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.353	54	0	0	NA	11qB1.3	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr11	58665966	58665966	A	G	ENSMUST00000214392.1	5	ENSMUSG00000063549	missense	M/V	136	Olfr322	ENSMUST00000214392.1:c.406A>G	ENSMUSP00000150990.1:p.Met136Val	H-2-Kb	9	11	1	VSPRLCVGL	MSPRLCVGL	NetMHC	41.21	145.2	3.523	111	0.234	262.919	656.418	2.497	145.2	41.21	240.7	111.6	1089.205937	424.7271271	1072.136299	414.2380608	M8	1.114285714	1.114285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.237	111	0	0	NA	11qB1.3	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr11	34688463	34688463	A	T	ENSMUST00000093193.11	1	ENSMUSG00000020143	missense	L/M	708	Dock2	ENSMUST00000093193.11:c.2122T>A	ENSMUSP00000090884.5:p.Leu708Met	H-2-Kb	9	11	1	MAYKKLMTV	LAYKKLMTV	NetMHCpan	53.3	93.4	1.752	248	0.169	111.459	136.253	1.222	92.9	63.29	93.4	53.3	179.1059444	159.628341	191.9773533	191.9773533	M8	0.014285714	0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.171	248	0	0	NA	11qA4	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.818371875	sgMsh2	cell line
chr11	58720856	58720856	C	T	ENSMUST00000214728.1	5	ENSMUSG00000108265	missense	S/N	64	Olfr318	ENSMUST00000214728.1:c.191G>A	ENSMUSP00000149053.1:p.Ser64Asn	H-2-Kb	9	5	7	PMYFFLNQL	PMYFFLSQL	SMM	19.016	16.6	0.873	485	0.029	59.229	39.301	0.664	65.82	93.15	57.6	113.7	16.60007308	19.01559854	21.00148478	25.30754397	M8	0.7	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.031	485	0	0	NA	11qB1.3	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.148359814	sgMsh2	cell line
chr11	34688463	34688463	A	T	ENSMUST00000093193.11	1	ENSMUSG00000020143	missense	L/M	708	Dock2	ENSMUST00000093193.11:c.2122T>A	ENSMUSP00000090884.5:p.Leu708Met	H-2-Kb	9	3	9	IQQHFSATM	IQQHFSATL	NetMHC	108.3	43.99	0.406	248	0.169	432.806	302.966	0.7	43.99	108.3	87	183.1	518.9314595	682.5115418	629.8686601	853.5913393	M8	-0.242857143	-0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.171	248	0	0	NA	11qA4	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.818371875	sgMsh2	cell line
chr11	69355786	69355786	T	C	ENSMUST00000151436.1	5	ENSMUSG00000018474	missense	T/A	96	Chd3	ENSMUST00000151436.1:c.284A>G	ENSMUSP00000118172.1:p.Thr96Ala	H-2-Kb	9	3	9	YSYLLYIPA	YSYLLYIPT	NetMHC	118.69	177.25	1.493	59	0.237	153.349	138.424	0.903	177.25	118.69	236	177.6	98.88035114	153.5005727	99.59785837	153.196908	M8	1.385714286	1.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.254	59	1	0	0	11qB3	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr11	67211360	67211360	C	A	ENSMUST00000124516.7	1	ENSMUSG00000056328	missense	R/S	826	Myh1	ENSMUST00000124516.7:c.2476C>A	ENSMUSP00000117569.1:p.Arg826Ser	H-2-Kb	9	6	6	IQYNVSAFM	IQYNVRAFM	NetMHC	125.35	144.71	1.154	258	0.236	385.659	420.869	1.091	144.71	125.35	131.9	140.2	830.0609824	631.1171763	697.02764	656.5230826	M8	0.728571429	0.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.229	258	0	0	NA	11qB3	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr11	69355786	69355786	T	C	ENSMUST00000151436.1	5	ENSMUSG00000018474	missense	T/A	96	Chd3	ENSMUST00000151436.1:c.284A>G	ENSMUSP00000118172.1:p.Thr96Ala	H-2-Kb	9	4	8	SYLLYIPAL	SYLLYIPTL	NetMHCpan	75	70.6	0.941	59	0.237	164.029	182.509	1.113	155.07	130.31	70.6	75	209.947158	197.7470439	244.4837509	227.1171867	M8	2.114285714	2.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.254	59	1	0	0	11qB3	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr11	50237259	50237259	T	A	ENSMUST00000102772.3	1	ENSMUSG00000020377	missense	N/I	55	Ltc4s	ENSMUST00000102772.3:c.164A>T	ENSMUSP00000099833.3:p.Asn55Ile	H-2-Kb	9	10	2	VICSEYFPL	VNCSEYFPL	SMM	116.174	87.722	0.755	54	0.352	137.523	100.849	0.733	107.02	148.79	115.7	213.3	87.72229799	116.1742828	94.67820161	126.255411	M8	0.271428571	1.2	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.353	54	0	0	NA	11qB1.3	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr11	61546578	61546578	A	C	ENSMUST00000179936.7	1	ENSMUSG00000001036	missense	I/S	56	Epn2	ENSMUST00000179936.7:c.167T>G	ENSMUSP00000136950.1:p.Ile56Ser	H-2-Kb	9	6	6	VAFSESMSM	VAFSEIMSM	NetMHCpan	123.9	82.3	0.664	104	0.298	145.532	154.465	1.061	140.62	155.51	82.3	123.9	168.310031	135.5532704	254.8296748	263.7849417	M8	0.1	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.283	104	195	47	0.241025641	11qB2	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr11	95969851	95969851	T	G	ENSMUST00000013559.2	1	ENSMUSG00000013415	missense	S/R	359	Igf2bp1	ENSMUST00000013559.2:c.1075A>C	ENSMUSP00000013559.2:p.Ser359Arg	H-2-Kb	9	8	4	AAMRLQSHL	AAMSLQSHL	NetMHC	159.08	222.94	1.401	117	0.316	409.595	316.523	0.773	222.94	159.08	226.5	212.3	406.5462879	606.8900259	544.816184	635.696763	M8	-0.357142857	0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.321	117	55	11	0.2	11qD	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr11	85559146	85559146	G	T	ENSMUST00000074875.10	5	ENSMUSG00000059439	missense	Q/H	683	Bcas3	ENSMUST00000074875.10:c.2049G>T	ENSMUSP00000074416.4:p.Gln683His	H-2-Kb	9	8	4	EAVHYYQLL	EAVQYYQLL	NetMHC	176.26	147.94	0.839	85	0.235	222.003	265.948	1.198	147.94	176.26	275.3	229.1	294.5167504	244.4049514	256.5960697	214.9067221	M8	0.357142857	0.357142857	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	85	30	8	0.266666667	11qC	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr11	85559146	85559146	G	T	ENSMUST00000074875.10	5	ENSMUSG00000059439	missense	Q/H	683	Bcas3	ENSMUST00000074875.10:c.2049G>T	ENSMUSP00000074416.4:p.Gln683His	H-2-Kb	9	9	3	AVHYYQLLL	AVQYYQLLL	NetMHCpan	141.3	330.7	2.34	85	0.235	236.854	440.824	1.861	330.62	202.62	330.7	141.3	550.9472251	271.0878168	664.1252616	325.2744865	M8	0.3	0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	85	30	8	0.266666667	11qC	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr11	87035223	87035223	T	C	ENSMUST00000020804.7	1	ENSMUSG00000061666	missense	T/A	299	Gdpd1	ENSMUST00000020804.7:c.895A>G	ENSMUSP00000020804.7:p.Thr299Ala	H-2-Kb	9	9	3	VMADYPTKL	VMTDYPTKL	NetMHCpan	134	233	1.739	110	0.255	178.725	248.628	1.391	288.51	222.06	233	134	258.8868552	177.8729877	238.3691237	179.5767056	M8	-0.771428571	0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.231	110	123	41	0.333333333	11qC	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr11	69944246	69944246	A	G	ENSMUST00000018710.12	1	ENSMUSG00000018566	missense	M/T	380	Slc2a4	ENSMUST00000018710.12:c.1139T>C	ENSMUSP00000018710.6:p.Met380Thr	H-2-Kb	9	11	1	TSYVSIVAI	MSYVSIVAI	NetMHCpan	173.5	137.8	0.794	55	0.127	288.038	313.641	1.089	235.44	232.32	137.8	173.5	391.8411118	385.5760057	405.7420321	343.7557727	M8	2.442857143	2.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.132	55	1	0	0	11qB3	chr11-69590981-82929860	4	4	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.631725658	sgMsh2	cell line
chr11	58757857	58757857	G	A	ENSMUST00000215071.1	5	ENSMUSG00000107677	missense	S/N	64	Olfr316	ENSMUST00000215071.1:c.191G>A	ENSMUSP00000151136.1:p.Ser64Asn	H-2-Kb	9	5	7	PMYFLLNQL	PMYFLLSQL	SMM	69.841	60.969	0.873	514	0.089	256.406	183.625	0.716	298.82	430.35	478.1	884.5	60.9691303	69.84092778	68.43054518	82.46126636	M8	0.842857143	0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.084	514	0	0	NA	11qB1.3	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.402007237	sgMsh2	cell line
chr11	102061618	102061618	G	A	ENSMUST00000017458.10	1	ENSMUSG00000017314	missense	A/V	343	Mpp2	ENSMUST00000017458.10:c.1028C>T	ENSMUSP00000017458.3:p.Ala343Val	H-2-Kb	9	5	7	LIYEEVVRM	LIYEEVARM	NetMHCpan	384	183	0.477	44	0.227	422.457	242.216	0.573	185.13	506.32	183	384	299.3022626	431.6283877	304.9650004	413.2853397	M8	-0.357142857	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.232	44	3	0	0	11qD	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr12	73545433	73545433	T	C	ENSMUST00000042975.6	NA	ENSMUSG00000034435	missense	I/V	303	Tmem30b	ENSMUST00000042975.6:c.907A>G	ENSMUSP00000037476.5:p.Ile303Val	H-2-Db	9	10	2	IVLSNISWM	IILSNISWM	NetMHC	62.9	120.85	1.921	148	0.176	162.708	318.687	1.959	120.85	62.9	261	128.8	376.374334	196.6165177	394.0669386	225.2008368	M8	0.6	1.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.192	148	0	0	NA	12qC3	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.918873684	sgMsh2	cell line
chr12	69190025	69190025	GT	G	ENSMUST00000021356.5	1	ENSMUSG00000020973	FS	T/X	770	Dnaaf2	ENSMUST00000021356.5:c.2308del	ENSMUSP00000021356.5:p.Thr770LeufsTer12	H-2-Db	9	5	7	SSLLNKLWF	SSLLNKTVV	NetMHC	102.74	8.12	0.079	389	0.175	148.467	27.724	0.187	8.12	102.74	17.2	273.1	38.24899249	138.2356312	40.41755147	158.6974688	M8	0.842857143	0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.182	389	122	14	0.114754098	12qC2	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.87101568	sgMsh2	cell line
chr12	98275382	98275382	T	C	ENSMUST00000075072.5	1	ENSMUSG00000021886	missense	M/T	98	Gpr65	ENSMUST00000075072.5:c.293T>C	ENSMUSP00000074581.4:p.Met98Thr	H-2-Kb	8	6	6	VFFTYTNF	VFFTYMNF	SMMPMBEC	20.358	18.019	0.885	434	0.171	21.686	17.92	0.826	17.82	22.25	45.7	37.4	16.50973111	21.12224132	18.01938647	20.35822922	M8	0.314285714	0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.178	434	0	0	NA	12qE	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.851872478	sgMsh2	cell line
chr11	110296589	110296589	GA	G	ENSMUST00000043961.11	1	ENSMUSG00000018800	FS	F/X	881	Abca5	ENSMUST00000043961.11:c.2643del	ENSMUSP00000047927.5:p.Leu882SerfsTer21	H-2-Kb	8	6	7	QIFMFFSI	QIFMFFLH	NetMHC	26.45	1630.79	61.656	56	0.357	55.014	1714.292	31.161	1630.79	26.45	3917.9	35.6	1797.794304	75.63799359	737.4625996	74.42862571	M8	2.642857143	2.642857143	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.37	56	58	0	0	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr12	75716177	75716177	C	A	ENSMUST00000021450.5	1	ENSMUSG00000021054	missense	G/V	410	Sgpp1	ENSMUST00000021450.5:c.1229G>T	ENSMUSP00000021450.4:p.Gly410Val	H-2-Kb	8	8	4	ITYVMVGF	ITYGMVGF	NetMHCpan	71.7	131.8	1.838	230	0.17	126.749	402.15	3.173	373.04	92.9	131.8	71.7	585.787365	231.6007706	431.2608157	160.597951	M8	1.528571429	1.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.169	230	41	5	0.12195122	12qC3	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.808800274	sgMsh2	cell line
chr12	24955384	24955384	T	C	ENSMUST00000110942.10	1	ENSMUSG00000020646	missense	V/A	386	Mboat2	ENSMUST00000110942.10:c.1157T>C	ENSMUSP00000106567.3:p.Val386Ala	H-2-Kb	8	5	7	LTFLTGAL	LTFLTGVL	SMMPMBEC	126.398	284.276	2.249	341	0.15	148.313	332.574	2.242	970.17	184.97	290.4	137.5	374.7485835	159.1255801	284.2758718	126.3979412	M8	1.485714286	1.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.156	341	109	23	0.211009174	12qA1.3	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.746584868	sgMsh2	cell line
chr12	69190025	69190025	GT	G	ENSMUST00000021356.5	1	ENSMUSG00000020973	FS	T/X	770	Dnaaf2	ENSMUST00000021356.5:c.2308del	ENSMUSP00000021356.5:p.Thr770LeufsTer12	H-2-Kb	8	14	0	KTYLTLTL	NA	NetMHCpan	98.5	NA	NA	389	0.175	204.29	NA	NA	NA	217.21	NA	98.5	NA	205.466016	NA	203.114066	M8	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.182	389	122	14	0.114754098	12qC2	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.87101568	sgMsh2	cell line
chr11	116007787	116007787	C	T	ENSMUST00000169928.7	5	ENSMUSG00000020758	missense	L/F	1731	Itgb4	ENSMUST00000169928.7:c.5191C>T	ENSMUSP00000127604.1:p.Leu1731Phe	H-2-Kb	8	9	3	SGFFQNPV	SGLFQNPV	NetMHCpan	86.7	790	9.112	126	0.206	252.258	1355.266	5.373	1954.35	262	790	86.7	1013.304567	242.5157786	1697.227266	392.4099402	M8	0.114285714	0.114285714	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.211	126	82	14	0.170731707	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr12	72556654	72556654	T	A	ENSMUST00000044352.7	1	ENSMUSG00000034501	missense	S/T	489	Pcnx4	ENSMUST00000044352.7:c.1465T>A	ENSMUSP00000038916.6:p.Ser489Thr	H-2-Kb	8	10	2	VTIGFTRA	VSIGFTRA	SMMPMBEC	216.641	129.64	0.598	326	0.169	273.909	146.801	0.536	79.74	275.71	178.1	397.8	163.9607892	272.1071791	129.6402918	216.6406749	M8	0.4	0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.165	326	52	5	0.096153846	12qC3	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.789657072	sgMsh2	cell line
chr11	110296589	110296589	GA	G	ENSMUST00000043961.11	1	ENSMUSG00000018800	FS	F/X	881	Abca5	ENSMUST00000043961.11:c.2643del	ENSMUSP00000047927.5:p.Leu882SerfsTer21	H-2-Kb	8	7	6	IFMFFSII	IFMFFLHH	NetMHCpan	64.1	5129.6	80.025	56	0.357	274.982	3691.245	13.424	5277.41	286	5129.6	64.1	2252.890066	279.7306149	725.6713881	270.2340064	M8	2.642857143	2.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.37	56	58	0	0	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr11	106991295	106991295	T	G	ENSMUST00000018506.12	1	ENSMUSG00000018362	missense	N/T	235	Kpna2	ENSMUST00000018506.12:c.704A>C	ENSMUSP00000018506.6:p.Asn235Thr	H-2-Kb	8	5	7	LTWTLSTL	LTWTLSNL	NetMHCpan	130.2	55.1	0.423	250	0.184	258.487	68.301	0.264	59.38	305.19	55.1	130.2	99.71029474	296.3056959	77.22181412	220.6683258	M8	0.542857143	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.199	250	85	0	0	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.952374287	sgMsh2	cell line
chr11	110296589	110296589	GA	G	ENSMUST00000043961.11	1	ENSMUSG00000018800	FS	F/X	881	Abca5	ENSMUST00000043961.11:c.2643del	ENSMUSP00000047927.5:p.Leu882SerfsTer21	H-2-Kb	8	12	1	SIILLKML	NA	NetMHC	308.84	NA	NA	56	0.357	359.989	NA	NA	NA	308.84	NA	398.5	NA	354.6010359	NA	365.3759857	M8	2.628571429	2.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.37	56	58	0	0	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr12	79261656	79261656	C	T	ENSMUST00000021547.7	1	ENSMUSG00000066440	missense	D/N	1705	Zfyve26	ENSMUST00000021547.7:c.5113G>A	ENSMUSP00000021547.6:p.Asp1705Asn	H-2-Kb	8	6	6	IGFTLNEV	IGFTLDEV	NetMHCpan	303.9	1187.3	3.907	165	0.139	375.252	970.102	2.585	1333.11	383.96	1187.3	303.9	696.209588	367.908651	752.9046857	382.5956254	M8	0.385714286	0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.145	165	31	2	0.064516129	12qC3	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.693941064	sgMsh2	cell line
chr11	110296589	110296589	GA	G	ENSMUST00000043961.11	1	ENSMUSG00000018800	FS	F/X	881	Abca5	ENSMUST00000043961.11:c.2643del	ENSMUSP00000047927.5:p.Leu882SerfsTer21	H-2-Kb	8	9	4	MFFSIILL	NA	SMMPMBEC	260.459	NA	NA	56	0.357	345.613	NA	NA	NA	597	NA	424.7	NA	266.5262568	NA	260.4593785	M8	3.057142857	3.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.37	56	58	0	0	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr12	54685943	54685943	TG	T	ENSMUST00000161592.7	1	ENSMUSG00000054302	FS	H/X	127	Eapp	ENSMUST00000161592.7:c.381del	ENSMUSP00000123698.1:p.His127GlnfsTer52	H-2-Kb	8	53	0	SLFQTVML	NA	SMMPMBEC	306.719	NA	NA	216	0.264	372.068	NA	NA	NA	617.01	NA	379.6	NA	364.5356443	NA	306.71852	M8	1.757142857	1.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.274	216	286	73	0.255244755	12qC1	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr11	117772845	117772845	T	C	ENSMUST00000026659.9	1	ENSMUSG00000025572	missense	I/V	514	Tmc6	ENSMUST00000026659.9:c.1540A>G	ENSMUSP00000026659.3:p.Ile514Val	H-2-Kb	8	10	2	LVLKMAVL	LILKMAVL	SMMPMBEC	395.13	281.67	0.713	88	0.216	457.257	401.56	0.878	565.93	825.08	490.7	423.9	312.4208431	490.6140712	281.6696149	395.1299959	M8	2.257142857	2.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.232	88	36	12	0.333333333	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr12	31708932	31708932	A	G	ENSMUST00000236002.1	NA	ENSMUSG00000044067	missense	I/T	397	Gpr22	ENSMUST00000236002.1:c.1190T>C	ENSMUSP00000158030.1:p.Ile397Thr	H-2-Kb	8	8	4	GTTTFHPL	GTTIFHPL	SMMPMBEC	181.443	200.789	1.107	499	0.178	344.511	294.142	0.854	1035.85	893.41	338.4	454.2	249.8848923	234.8226582	200.7890385	181.4429089	M8	-0.042857143	-0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.182	499	0	0	NA	12qA3	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.87101568	sgMsh2	cell line
chr12	38173837	38173837	GT	G	ENSMUST00000040500.8	1	ENSMUSG00000036095	FS	G/X	418	Dgkb	ENSMUST00000040500.8:c.1256del	ENSMUSP00000037900.7:p.Leu419CysfsTer13	H-2-Kb	9	13	0	RSLLFLAHI	NA	NetMHC	16.58	NA	NA	304	0.178	124.3	NA	NA	NA	16.58	NA	25.7	NA	222.8999649	NA	250.7552301	M8	2.471428571	2.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.18	304	0	0	NA	12qA3	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.861444079	sgMsh2	cell line
chr12	98275382	98275382	T	C	ENSMUST00000075072.5	1	ENSMUSG00000021886	missense	M/T	98	Gpr65	ENSMUST00000075072.5:c.293T>C	ENSMUSP00000074581.4:p.Met98Thr	H-2-Kb	9	5	7	SVFFTYTNF	SVFFTYMNF	NetMHCpan	31	33.7	1.087	434	0.171	50.82	51.291	1.009	31.09	34.48	33.7	31	68.88267433	67.15989369	103.5738214	93.37916798	M8	0.314285714	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.178	434	0	0	NA	12qE	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.851872478	sgMsh2	cell line
chr12	31709410	31709410	T	C	ENSMUST00000236002.1	NA	ENSMUSG00000044067	missense	S/G	238	Gpr22	ENSMUST00000236002.1:c.712A>G	ENSMUSP00000158030.1:p.Ser238Gly	H-2-Kb	9	9	3	STGEYYTEL	STSEYYTEL	NetMHC	37.25	32.97	0.885	336	0.161	75.815	105.246	1.388	32.97	37.25	31.7	45.4	181.1798935	108.9205937	177.521108	106.2306894	M8	-0.985714286	-0.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.162	336	1	1	1	12qA3	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.775299671	sgMsh2	cell line
chr11	110296589	110296589	GA	G	ENSMUST00000043961.11	1	ENSMUSG00000018800	FS	F/X	881	Abca5	ENSMUST00000043961.11:c.2643del	ENSMUSP00000047927.5:p.Leu882SerfsTer21	H-2-Kb	9	6	7	QIFMFFSII	QIFMFFLHH	NetMHCpan	31.6	7300.7	231.035	56	0.357	48.27	942.485	19.525	1593.73	40.42	7300.7	31.6	248.3762124	56.11900987	291.2393144	81.893607	M8	2.642857143	2.642857143	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.37	56	58	0	0	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr11	120134832	120134832	A	G	ENSMUST00000103018.10	1	ENSMUSG00000061306	missense	M/T	226	Slc38a10	ENSMUST00000103018.10:c.677T>C	ENSMUSP00000099307.4:p.Met226Thr	H-2-Kb	9	11	1	TSSIFASSL	MSSIFASSL	NetMHCpan	80.7	63.8	0.791	130	0.246	321.872	325.304	1.011	80.3	100.18	63.8	80.7	570.3087043	561.1900987	641.5787927	543.5631415	M8	1.5	1.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.266	130	46	10	0.217391304	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr12	84106461	84106461	G	T	ENSMUST00000056822.3	1	ENSMUSG00000043487	missense	G/V	159	Acot6	ENSMUST00000056822.3:c.476G>T	ENSMUSP00000056131.3:p.Gly159Val	H-2-Kb	9	11	1	VIIDLYGSI	GIIDLYGSI	NetMHCpan	77.9	1628.7	20.908	307	0.166	151.163	1429.64	9.458	2254.44	116.01	1628.7	77.9	1230.580418	226.5217979	933.7916798	186.3159349	M8	0.971428571	1.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.157	307	1	0	0	12qD1	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.751370669	sgMsh2	cell line
chr12	31547124	31547124	T	C	ENSMUST00000001253.7	1	ENSMUSG00000020651	missense	N/S	248	Slc26a4	ENSMUST00000001253.7:c.743A>G	ENSMUSP00000001253.7:p.Asn248Ser	H-2-Kb	9	5	7	VSTKNYSGI	VSTKNYNGI	NetMHC	120.76	277.9	2.301	237	0.16	269.151	316.632	1.176	277.9	120.76	586.2	300.6	296.558243	258.8868552	336.7053368	279.4151821	M8	-0.871428571	-0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.164	237	0	0	NA	12qA2	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.784871272	sgMsh2	cell line
chr12	69190025	69190025	GT	G	ENSMUST00000021356.5	1	ENSMUSG00000020973	FS	T/X	770	Dnaaf2	ENSMUST00000021356.5:c.2308del	ENSMUSP00000021356.5:p.Thr770LeufsTer12	H-2-Kb	9	11	1	LWFKTYLTL	NA	SMM	52.736	NA	NA	389	0.175	87.638	NA	NA	NA	123.24	NA	86.1	NA	52.73634174	NA	89.17641311	M8	0.542857143	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.182	389	122	14	0.114754098	12qC2	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.87101568	sgMsh2	cell line
chr12	72556654	72556654	T	A	ENSMUST00000044352.7	1	ENSMUSG00000034501	missense	S/T	489	Pcnx4	ENSMUST00000044352.7:c.1465T>A	ENSMUSP00000038916.6:p.Ser489Thr	H-2-Kb	9	10	2	VTIGFTRAF	VSIGFTRAF	NetMHC	135.99	77.66	0.571	326	0.169	241.68	150.693	0.624	77.66	135.99	132.3	200.8	169.0869148	282.5595563	216.3963843	351.7628732	M8	0.9	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.165	326	52	5	0.096153846	12qC3	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.789657072	sgMsh2	cell line
chr11	116047690	116047690	T	C	ENSMUST00000021116.11	1	ENSMUSG00000020770	missense	F/L	40	Unk	ENSMUST00000021116.11:c.118T>C	ENSMUSP00000021116.5:p.Phe40Leu	H-2-Kb	9	3	9	QHYTYLKEL	QHYTYLKEF	NetMHC	157.48	600.28	3.812	131	0.183	176.351	480.118	2.723	600.28	157.48	601.2	194.9	266.1399065	157.8010905	359.9564831	208.0894201	M8	-0.442857143	-0.442857143	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.186	131	15	4	0.266666667	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.890158882	sgMsh2	cell line
chr12	75716177	75716177	C	A	ENSMUST00000021450.5	1	ENSMUSG00000021054	missense	G/V	410	Sgpp1	ENSMUST00000021450.5:c.1229G>T	ENSMUSP00000021450.4:p.Gly410Val	H-2-Kb	9	11	1	VMVGFSITF	GMVGFSITF	SMM	93.349	507.119	5.433	230	0.17	171.911	1429.349	8.314	2096.18	191.68	3962.6	381.5	507.1191374	93.34907095	762.5178243	152.1423079	M8	1.771428571	2.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.169	230	41	5	0.12195122	12qC3	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.808800274	sgMsh2	cell line
chr12	55707969	55707969	A	G	ENSMUST00000085385.6	1	ENSMUSG00000021027	missense	L/S	1179	Ralgapa1	ENSMUST00000085385.6:c.3536T>C	ENSMUSP00000082503.5:p.Leu1179Ser	H-2-Kb	9	4	8	YNIMHCGSL	YNIMHCGLL	NetMHCpan	97.8	114.6	1.172	220	0.164	248.131	188.429	0.759	147.64	214.91	114.6	97.8	277.4022632	379.4110717	229.2186762	281.3519957	M8	1.185714286	1.185714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.161	220	77	4	0.051948052	12qC1	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.770513871	sgMsh2	cell line
chr11	110296589	110296589	GA	G	ENSMUST00000043961.11	1	ENSMUSG00000018800	FS	F/X	881	Abca5	ENSMUST00000043961.11:c.2643del	ENSMUSP00000047927.5:p.Leu882SerfsTer21	H-2-Kb	9	8	5	FMFFSIILL	NA	SMM	143.255	NA	NA	56	0.357	208.082	NA	NA	NA	240.27	NA	758.8	NA	143.2550696	NA	175.8935847	M8	3.057142857	3.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.37	56	58	0	0	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr12	37414018	37414018	C	G	ENSMUST00000049874.13	1	ENSMUSG00000050103	missense	L/V	366	Agmo	ENSMUST00000049874.13:c.1096C>G	ENSMUSP00000051441.7:p.Leu366Val	H-2-Kb	9	11	1	VLRIFFFIL	LLRIFFFIL	SMM	131.253	377.668	2.877	214	0.037	229.383	801.314	3.493	1199.68	303.08	1654.7	379.1	377.6678362	131.2532301	402.9489236	155.6861575	M8	2.385714286	2.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.037	214	0	0	NA	12qA3	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.177074616	sgMsh2	cell line
chr12	98275382	98275382	T	C	ENSMUST00000075072.5	1	ENSMUSG00000021886	missense	M/T	98	Gpr65	ENSMUST00000075072.5:c.293T>C	ENSMUSP00000074581.4:p.Met98Thr	H-2-Kb	9	11	1	TNFYSSTAF	MNFYSSTAF	SMM	318.5	323.676	1.016	434	0.171	365.539	317.878	0.87	312.08	327.2	253.8	411.6	323.6756285	318.5004131	476.7053215	403.8778168	M8	0.542857143	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.178	434	0	0	NA	12qE	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.851872478	sgMsh2	cell line
chr11	110296589	110296589	GA	G	ENSMUST00000043961.11	1	ENSMUSG00000018800	FS	F/X	881	Abca5	ENSMUST00000043961.11:c.2643del	ENSMUSP00000047927.5:p.Leu882SerfsTer21	H-2-Kb	9	5	8	VQIFMFFSI	VQIFMFFLH	NetMHCpan	161.2	10150.8	62.97	56	0.357	301.113	3944.725	13.1	6792.34	352.89	10150.8	161.2	1047.393803	296.558243	1097.109561	305.6680173	M8	2.642857143	2.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.37	56	58	0	0	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr12	24955384	24955384	T	C	ENSMUST00000110942.10	1	ENSMUSG00000020646	missense	V/A	386	Mboat2	ENSMUST00000110942.10:c.1157T>C	ENSMUSP00000106567.3:p.Val386Ala	H-2-Kb	9	5	7	LTFLTGALM	LTFLTGVLM	NetMHC	354.25	977.61	2.76	341	0.15	486.696	929.583	1.91	977.61	354.25	1440.3	432.5	780.0276543	540.8913049	881.5561915	650.5040428	M8	1.857142857	1.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.156	341	109	23	0.211009174	12qA1.3	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.746584868	sgMsh2	cell line
chr11	110296589	110296589	GA	G	ENSMUST00000043961.11	1	ENSMUSG00000018800	FS	F/X	881	Abca5	ENSMUST00000043961.11:c.2643del	ENSMUSP00000047927.5:p.Leu882SerfsTer21	H-2-Kb	9	7	6	IFMFFSIIL	IFMFFLHHS	SMM	133.693	352.46	2.636	56	0.357	274.86	1226.151	4.461	2075.53	359.94	1860.4	416.4	352.4601324	133.6934098	591.9022625	189.7798067	M8	2.785714286	2.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.37	56	58	0	0	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr12	51999859	51999859	T	G	ENSMUST00000021339.7	1	ENSMUSG00000020956	missense	N/H	66	Dtd2	ENSMUST00000021339.7:c.196A>C	ENSMUSP00000021339.7:p.Asn66His	H-2-Kb	9	6	6	VNTLLHVKL	VNTLLNVKL	NetMHCpan	212.6	1257.5	5.915	115	0.165	402.088	1117.492	2.779	1647.25	460.42	1257.5	212.6	977.4847712	462.4981501	708.3534281	343.7557727	M8	1.114285714	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.165	115	73	7	0.095890411	12qC1	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.789657072	sgMsh2	cell line
chr11	114987405	114987405	T	G	ENSMUST00000045075.2	1	ENSMUSG00000034641	missense	T/P	94	Cd300ld	ENSMUST00000045075.2:c.280A>C	ENSMUSP00000047022.2:p.Thr94Pro	H-2-Kb	9	4	8	RDFIFTVPM	RDFIFTVTM	SMMPMBEC	413.285	752.056	1.82	404	0.198	465.648	927.044	1.991	2749.39	1529.58	988.9	447	865.1870294	484.2950164	752.0556875	413.2853397	M8	1.985714286	1.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.211	404	0	0	NA	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr13	75878849	75878849	T	G	ENSMUST00000022078.11	1	ENSMUSG00000021589	missense	K/N	468	Rhobtb3	ENSMUST00000022078.11:c.1404A>C	ENSMUSP00000022078.5:p.Lys468Asn	H-2-Db	9	7	5	YGVSNETFL	YGVSKETFL	NetMHC	4.07	552.12	135.656	179	0.184	38.329	1708.94	44.587	552.12	4.07	1286.7	11.1	2131.179353	65.55714019	2236.505652	66.61468828	M8	0.328571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.177	179	124	31	0.25	13qC1	chr13-3556297-119495179	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.847086678	sgMsh2	cell line
chr14	45614188	45614188	T	C	ENSMUST00000087320.12	1	ENSMUSG00000037697	missense	Y/C	511	Ddhd1	ENSMUST00000087320.12:c.1532A>G	ENSMUSP00000084577.5:p.Tyr511Cys	H-2-Kb	8	8	4	IMYCTSPL	IMYYTSPL	NetMHC	11.28	6.72	0.596	158	0.297	26.327	19.907	0.756	6.72	11.28	8.5	16.2	35.54184757	37.30267702	31.31410475	36.45356443	M8	0.542857143	0.642857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.28	158	31	7	0.225806452	14qC1	chr14-3072210-52852156	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr12	117974938	117974938	G	A	ENSMUST00000084806.6	1	ENSMUSG00000018581	missense	A/V	3265	Dnah11	ENSMUST00000084806.6:c.9794C>T	ENSMUSP00000081867.6:p.Ala3265Val	H-2-Kb	8	7	5	KSFAVAGL	KSFAAAGL	NetMHC	11.66	16.83	1.443	171	0.158	23.502	30.038	1.278	16.83	11.66	34.2	31.4	28.6906244	22.52890066	31.38629122	24.47597495	M8	1.885714286	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.174	171	0	0	NA	12qF2	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.832729276	sgMsh2	cell line
chr12	108361203	108361203	T	C	ENSMUST00000021684.5	1	ENSMUSG00000021259	missense	F/L	425	Cyp46a1	ENSMUST00000021684.5:c.1273T>C	ENSMUSP00000021684.4:p.Phe425Leu	H-2-Kb	8	11	1	LTYFPFSL	FTYFPFSL	NetMHCpan	22.8	31.8	1.395	178	0.191	102.142	85.132	0.833	67.05	60.82	31.8	22.8	103.2143305	143.4630303	134.1961326	157.666708	M8	0.714285714	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.179	178	0	0	NA	12qF1	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.856658279	sgMsh2	cell line
chr14	30565598	30565598	A	C	ENSMUST00000022529.7	1	ENSMUSG00000021957	missense	D/A	183	Tkt	ENSMUST00000022529.7:c.548A>C	ENSMUSP00000022529.6:p.Asp183Ala	H-2-Kb	8	8	4	AIFAINRL	AIFDINRL	NetMHCpan	63.2	123.2	1.949	71	0.254	133.004	297.159	2.234	429.52	121.55	123.2	63.2	314.5864409	164.7175978	279.7306149	144.4574685	M8	1.342857143	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.246	71	735	220	0.299319728	14qB	chr14-3072210-52852156	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr13	114977646	114977646	T	C	ENSMUST00000061673.8	1	ENSMUSG00000042284	missense	T/A	908	Itga1	ENSMUST00000061673.8:c.2722A>G	ENSMUSP00000077132.6:p.Thr908Ala	H-2-Kb	8	5	7	IIFQFNAS	IIFQFNTS	SMM	20.785	34.573	1.663	153	0.203	85.308	143.189	1.678	244.34	136.83	233.2	298.4	34.57323355	20.78452003	53.17897962	33.78625068	M8	0.585714286	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.205	153	83	13	0.156626506	13qD2.2	chr13-3556297-119495179	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.98108909	sgMsh2	cell line
chr13	34044462	34044462	T	C	ENSMUST00000040656.7	1	ENSMUSG00000038286	missense	V/A	49	Bphl	ENSMUST00000040656.7:c.146T>C	ENSMUSP00000046168.6:p.Val49Ala	H-2-Kb	8	6	6	VAVNGAHL	VAVNGVHL	NetMHC	146.35	634.29	4.334	176	0.244	268.319	744.618	2.775	634.29	146.35	812	377.4	872.4489012	301.8144301	677.2359439	234.8226582	M8	0.642857143	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.217	176	21	3	0.142857143	13qA3.3	chr13-3556297-119495179	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr13	54221267	54221267	TC	T	ENSMUST00000038101.3	1	ENSMUSG00000034987	FS	S/X	374	Hrh2	ENSMUST00000038101.3:c.1122del	ENSMUSP00000038170.3:p.Phe375SerfsTer53	H-2-Kb	8	26	0	SNHHYISV	NA	NetMHCpan	84.2	NA	NA	87	0.207	192.438	NA	NA	NA	148.97	NA	84.2	NA	235.9065504	NA	249.310173	M8	-0.471428571	-0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.186	87	0	0	NA	13qB1	chr13-3556297-119495179	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.890158882	sgMsh2	cell line
chr12	103424107	103424107	AT	A	ENSMUST00000110001.3	1	ENSMUSG00000041645	FS	K/X	208	Ddx24	ENSMUST00000110001.3:c.624del	ENSMUSP00000105628.2:p.Lys208AsnfsTer50	H-2-Kb	8	11	1	NWILFRAL	NA	NetMHC	194.82	NA	NA	216	0.157	264.776	NA	NA	NA	194.82	NA	420.9	NA	271.4813499	NA	258.0714726	M8	1.614285714	1.614285714	FALSE	FALSE	FALSE	0	TRUE	0	Strelka2;Vardict	2	0.1574	216	313	15	0.047923323	12qE	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.753284989	sgMsh2	cell line
chr12	103104843	103104843	CA	C	ENSMUST00000101099.11	1	ENSMUSG00000021198	FS	Q/X	1330	Unc79	ENSMUST00000101099.11:c.3994del	ENSMUSP00000098659.5:p.Met1332CysfsTer59	H-2-Kb	8	32	0	ITLTWANT	NA	SMMPMBEC	112.912	NA	NA	303	0.188	220.203	NA	NA	NA	238.69	NA	942.4	NA	201.7158386	NA	112.911974	M8	-0.128571429	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.182	303	0	0	NA	12qE	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.87101568	sgMsh2	cell line
chr13	22293541	22293541	T	C	ENSMUST00000228382.1	NA	ENSMUSG00000069295	missense	S/P	117	Vmn1r196	ENSMUST00000228382.1:c.349T>C	ENSMUSP00000154358.1:p.Ser117Pro	H-2-Kb	8	9	3	RAPWWGRL	RASWWGRL	NetMHCpan	195.9	896.8	4.578	294	0.269	341.715	1061.965	3.108	1423.61	271.58	896.8	195.9	1129.11974	421.444121	994.8096742	411.8508816	M8	-0.385714286	-0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.258	294	0	0	NA	13qA3.1	chr13-3556297-119495179	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr13	116910900	116910900	A	G	ENSMUST00000022239.7	5	ENSMUSG00000021725	missense	L/P	251	Parp8	ENSMUST00000022239.7:c.752T>C	ENSMUSP00000022239.6:p.Leu251Pro	H-2-Kb	8	8	4	IVRPHCSL	IVRLHCSL	SMM	192.637	101.097	0.525	172	0.262	278.151	113.701	0.409	111.86	291	203	380.5	101.0974031	192.6371303	115.5420317	265.3016799	M8	0.057142857	0.157142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.259	172	61	22	0.360655738	13qD2.3	chr13-3556297-119495179	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr13	114977646	114977646	T	C	ENSMUST00000061673.8	1	ENSMUSG00000042284	missense	T/A	908	Itga1	ENSMUST00000061673.8:c.2722A>G	ENSMUSP00000077132.6:p.Thr908Ala	H-2-Kb	8	7	5	FQFNASHL	FQFNTSHL	SMM	216.641	318.229	1.469	153	0.203	315.772	435.915	1.38	553.6	386.22	615.6	434.7	318.2291802	216.6406749	295.6242117	245.323979	M8	-0.371428571	-0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.205	153	83	13	0.156626506	13qD2.2	chr13-3556297-119495179	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.98108909	sgMsh2	cell line
chr13	56629694	56629694	TG	T	ENSMUST00000045173.9	1	ENSMUSG00000035493	FS	L/X	330	Tgfbi	ENSMUST00000045173.9:c.995del	ENSMUSP00000037719.8:p.Gly332AlafsTer79	H-2-Kb	8	24	0	SSPSTGRL	NA	SMMPMBEC	356.238	NA	NA	102	0.294	410.072	NA	NA	NA	460.61	NA	1337.4	NA	359.5340277	NA	356.2377999	M8	-0.714285714	-0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.302	102	2	0	0	13qB1	chr13-3556297-119495179	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr13	34044462	34044462	T	C	ENSMUST00000040656.7	1	ENSMUSG00000038286	missense	V/A	49	Bphl	ENSMUST00000040656.7:c.146T>C	ENSMUSP00000046168.6:p.Val49Ala	H-2-Kb	8	11	1	AHLHYQRV	VHLHYQRV	SMM	425.344	112.912	0.265	176	0.244	494.03	124.019	0.251	77.54	524.89	200.5	835	112.911974	425.3436955	135.1263357	463.16955	M8	-1.1	-1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.217	176	21	3	0.142857143	13qA3.3	chr13-3556297-119495179	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr13	110260597	110260597	G	T	ENSMUST00000167824.2	1	ENSMUSG00000021700	missense	S/Y	45	Rab3c	ENSMUST00000167824.2:c.134C>A	ENSMUSP00000132945.1:p.Ser45Tyr	H-2-Kb	8	10	2	TYFLFRYA	TSFLFRYA	NetMHCpan	218	21.8	0.1	104	0.212	323.719	27.677	0.085	17.38	527.66	21.8	218	42.6324214	367.0624846	33.55366776	280.3754606	M8	0.585714286	0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.237	104	0	0	NA	13qD2.1	chr13-3556297-119495179	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr12	103424107	103424107	AT	A	ENSMUST00000110001.3	1	ENSMUSG00000041645	FS	K/X	208	Ddx24	ENSMUST00000110001.3:c.624del	ENSMUSP00000105628.2:p.Lys208AsnfsTer50	H-2-Kb	9	10	2	KNWILFRAL	NA	NetMHC	49.93	NA	NA	216	0.157	173.005	NA	NA	NA	49.93	NA	54.1	NA	299.9922256	NA	291.9106903	M8	1.614285714	1.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1574	216	313	15	0.047923323	12qE	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.753284989	sgMsh2	cell line
chr13	67542395	67542395	TA	T	ENSMUST00000181892.8	1	ENSMUSG00000095432	FS	Y/X	249	Zfp748	ENSMUST00000181892.8:c.745del	ENSMUSP00000137928.1:p.Tyr249ThrfsTer47	H-2-Kb	9	44	0	VAMPFVHSI	NA	NetMHCpan	32.9	NA	NA	183	0.24	254.832	NA	NA	NA	98.41	NA	32.9	NA	411.2538721	NA	441.8247089	M8	1.114285714	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.24	183	40	5	0.125	13qB3	chr13-3556297-119495179	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr13	45567073	45567073	T	C	ENSMUST00000180110.8	1	ENSMUSG00000046876	missense	T/A	449	Atxn1	ENSMUST00000180110.8:c.1345A>G	ENSMUSP00000137439.1:p.Thr449Ala	H-2-Kb	9	8	4	QAIAYAGGL	QAITYAGGL	NetMHC	111.71	91.11	0.816	88	0.239	351.456	313.96	0.893	91.11	111.71	194.3	217.5	433.6206938	485.4114317	534.872168	637.1621954	M8	1.4	1.4	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.267	88	10	0	0	13qA5	chr13-3556297-119495179	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr13	54221267	54221267	TC	T	ENSMUST00000038101.3	1	ENSMUSG00000034987	FS	S/X	374	Hrh2	ENSMUST00000038101.3:c.1122del	ENSMUSP00000038170.3:p.Phe375SerfsTer53	H-2-Kb	9	26	0	SNHHYISVL	NA	NetMHCpan	68.7	NA	NA	87	0.207	178.271	NA	NA	NA	141.14	NA	68.7	NA	229.67303	NA	215.4021332	M8	0.571428571	0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.186	87	0	0	NA	13qB1	chr13-3556297-119495179	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.890158882	sgMsh2	cell line
chr12	118008803	118008803	A	G	ENSMUST00000084806.6	1	ENSMUSG00000018581	missense	F/S	2882	Dnah11	ENSMUST00000084806.6:c.8645T>C	ENSMUSP00000081867.6:p.Phe2882Ser	H-2-Kb	9	10	2	VSLLTDAHV	VFLLTDAHV	NetMHC	151.93	528.66	3.48	442	0.154	432.793	838.709	1.938	528.66	151.93	3378.6	1196.3	713.0336075	385.5760057	964.3840079	480.0096849	M8	0.885714286	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.152	442	0	0	NA	12qF2	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.727441667	sgMsh2	cell line
chr13	75878849	75878849	T	G	ENSMUST00000022078.11	1	ENSMUSG00000021589	missense	K/N	468	Rhobtb3	ENSMUST00000022078.11:c.1404A>C	ENSMUSP00000022078.5:p.Lys468Asn	H-2-Kb	9	10	2	SNETFLSFL	SKETFLSFL	NetMHC	152.36	2784.6	18.276	179	0.184	305.223	2383.314	7.808	2784.6	152.36	3434.7	227.4	1982.028979	421.8033261	1691.414308	383.0451784	M8	1.171428571	1.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.177	179	124	31	0.25	13qC1	chr13-3556297-119495179	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.847086678	sgMsh2	cell line
chr12	114583615	114583615	A	G	ENSMUST00000193893.5	NA	ENSMUSG00000094694	missense	L/P	102	Ighv1-9	ENSMUST00000193893.5:c.305T>C	ENSMUSP00000141381.1:p.Leu102Pro	H-2-Kb	9	6	6	TAYMQPSSL	TAYMQLSSL	NetMHCpan	94.5	23.4	0.248	706	0.147	194.043	70.413	0.363	46.83	166.72	23.4	94.5	93.99613579	221.3655323	100.9834026	241.1293081	M8	-0.328571429	-0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.146	706	0	0	NA	12qF2	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.698726864	sgMsh2	cell line
chr14	30565598	30565598	A	C	ENSMUST00000022529.7	1	ENSMUSG00000021957	missense	D/A	183	Tkt	ENSMUST00000022529.7:c.548A>C	ENSMUSP00000022529.6:p.Asp183Ala	H-2-Kb	9	7	5	VAIFAINRL	VAIFDINRL	NetMHCpan	105.3	537.5	5.104	71	0.254	203.936	485.56	2.381	877.91	173.39	537.5	105.3	433.6206938	234.4822647	361.6179668	276.8534884	M8	1.342857143	2.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.246	71	735	220	0.299319728	14qB	chr14-3072210-52852156	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr12	116233327	116233327	AT	A	ENSMUST00000039349.7	1	ENSMUSG00000042050	FS	N/X	470	Wdr60	ENSMUST00000039349.7:c.1409del	ENSMUSP00000047334.6:p.Asn470IlefsTer23	H-2-Kb	9	22	0	IMLRETFRL	NA	NetMHCpan	190.2	NA	NA	231	0.152	277.611	NA	NA	NA	273.96	NA	190.2	NA	281.2613131	NA	346.1385739	M8	-0.4	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1515	231	41	1	0.024390244	12qF2	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.725048766	sgMsh2	cell line
chr12	116318844	116318844	A	C	ENSMUST00000100986.3	1	ENSMUSG00000021171	missense	E/A	138	Esyt2	ENSMUST00000100986.3:c.413A>C	ENSMUSP00000098548.2:p.Glu138Ala	H-2-Kb	9	5	7	FICQFIAKL	FICQFIEKL	NetMHC	274.03	1858.1	6.781	259	0.139	434.65	1868.7	4.299	1858.1	274.03	1879.3	413	1888.469608	820.5593529	1023.882217	456.2995075	M8	1.142857143	2.2	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.142	259	246	43	0.174796748	12qF2	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.679583662	sgMsh2	cell line
chr13	34044462	34044462	T	C	ENSMUST00000040656.7	1	ENSMUSG00000038286	missense	V/A	49	Bphl	ENSMUST00000040656.7:c.146T>C	ENSMUSP00000046168.6:p.Val49Ala	H-2-Kb	9	10	2	GAHLHYQRV	GVHLHYQRV	SMM	232.333	261.282	1.125	176	0.244	256.359	280.252	1.093	286.82	275.99	1129.2	798.7	261.2823058	232.3325184	273.6843727	236.7282022	M8	-1.1	-0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.217	176	21	3	0.142857143	13qA3.3	chr13-3556297-119495179	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr12	111678648	111678648	A	G	ENSMUST00000084947.9	1	ENSMUSG00000060950	missense	Y/C	6	Trmt61a	ENSMUST00000084947.9:c.17A>G	ENSMUSP00000082011.3:p.Tyr6Cys	H-2-Kb	9	1	6	MSFVACEEL	MSFVAYEEL	NetMHCpan	242.1	23.8	0.098	150	0.087	359.464	57.617	0.16	18.72	290.27	23.8	242.1	91.43448014	428.6570788	121.6886295	527.5334467	M8	1.157142857	1.271428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.106	150	37	4	0.108108108	12qF1	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.507294846	sgMsh2	cell line
chr14	34594872	34594872	T	C	ENSMUST00000022331.2	1	ENSMUSG00000021799	missense	Y/C	320	Opn4	ENSMUST00000022331.2:c.959A>G	ENSMUSP00000022331.2:p.Tyr320Cys	H-2-Kb	9	6	6	VAFAGCSHI	VAFAGYSHI	NetMHCpan	125.5	15.8	0.126	67	0.328	316.575	52.299	0.165	26.39	294.11	15.8	125.5	87.5205423	410.3080144	78.20778752	339.0392667	M8	1.028571429	1.7	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.339	67	0	0	NA	14qB	chr14-3072210-52852156	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr14	29170631	29170631	A	T	ENSMUST00000022567.8	1	ENSMUSG00000021991	missense	F/Y	418	Cacna2d3	ENSMUST00000022567.8:c.1253T>A	ENSMUSP00000022567.7:p.Phe418Tyr	H-2-Kb	9	6	6	ANKGFYTQI	ANKGFFTQI	NetMHCpan	153.5	133	0.866	115	0.322	222.545	313.745	1.41	417.88	298.99	133	153.5	384.6892055	273.5961615	242.8007366	171.4944225	M8	-0.357142857	-0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.335	115	0	0	NA	14qA3	chr14-3072210-52852156	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr13	75878849	75878849	T	G	ENSMUST00000022078.11	1	ENSMUSG00000021589	missense	K/N	468	Rhobtb3	ENSMUST00000022078.11:c.1404A>C	ENSMUSP00000022078.5:p.Lys468Asn	H-2-Kb	9	9	3	VSNETFLSF	VSKETFLSF	SMM	343.645	425.706	1.239	179	0.184	405.045	443.114	1.094	688.38	363.15	407.4	540.2	425.7062242	343.6449768	460.5215948	446.9407979	M8	0.128571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.177	179	124	31	0.25	13qC1	chr13-3556297-119495179	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.847086678	sgMsh2	cell line
chr13	21674653	21674653	C	T	ENSMUST00000216083.1	5	ENSMUSG00000108534	missense	C/Y	97	Olfr1360	ENSMUST00000216083.1:c.290G>A	ENSMUSP00000149423.1:p.Cys97Tyr	H-2-Kb	9	7	5	SYGGYVAQL	SYGGCVAQL	SMMPMBEC	358.303	1154.117	3.221	221	0.231	444.053	1769.897	3.986	1793.53	366.78	3760.5	626.7	1746.264398	521.3267383	1154.11743	358.3026333	M8	0.6	0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.243	221	0	0	NA	13qA3.1	chr13-3556297-119495179	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr13	115001595	115001595	T	C	ENSMUST00000061673.8	1	ENSMUSG00000042284	missense	N/S	418	Itga1	ENSMUST00000061673.8:c.1253A>G	ENSMUSP00000077132.6:p.Asn418Ser	H-2-Kb	9	6	6	IVIPHSTTF	IVIPHNTTF	NetMHCpan	252.2	455.9	1.808	252	0.25	385.48	630.018	1.634	1053.44	404.43	455.9	252.2	676.2542383	366.5303993	583.781059	444.8872915	M8	0.042857143	0.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.249	252	67	13	0.194029851	13qD2.2	chr13-3556297-119495179	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr14	45614188	45614188	T	C	ENSMUST00000087320.12	1	ENSMUSG00000037697	missense	Y/C	511	Ddhd1	ENSMUST00000087320.12:c.1532A>G	ENSMUSP00000084577.5:p.Tyr511Cys	H-2-Kb	9	8	4	IMYCTSPLY	IMYYTSPLY	SMM	100.487	72.629	0.723	158	0.297	436.085	328.486	0.753	479.86	649.71	1452	1280.4	72.6289892	100.4870276	177.1128208	222.4590099	M8	0.085714286	0.642857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.28	158	31	7	0.225806452	14qC1	chr14-3072210-52852156	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr13	114977646	114977646	T	C	ENSMUST00000061673.8	1	ENSMUSG00000042284	missense	T/A	908	Itga1	ENSMUST00000061673.8:c.2722A>G	ENSMUSP00000077132.6:p.Thr908Ala	H-2-Kb	10	5	7	IIFQFNASHL	IIFQFNTSHL	NetMHCpan	18.2	20.2	1.11	153	0.203	482.153	562.852	1.167	29.58	22.72	20.2	18.2	1175.790644	1000.760142	1096.12479	941.5860161	M8	-0.371428571	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.205	153	83	13	0.156626506	13qD2.2	chr13-3556297-119495179	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.98108909	sgMsh2	cell line
chr15	27755139	27755139	T	C	ENSMUST00000090247.6	5	ENSMUSG00000022263	missense	K/R	2112	Trio	ENSMUST00000090247.6:c.6335A>G	ENSMUSP00000087714.5:p.Lys2112Arg	H-2-Db	9	6	6	YQLLLRDFL	YQLLLKDFL	NetMHC	54.8	115.77	2.113	87	0.253	145.703	262.439	1.801	115.77	54.8	283.9	142.6	245.2562028	148.8058483	279.6211387	186.0244375	M8	1.428571429	1.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.286	87	69	2	0.028985507	15qB1	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr15	75597834	75597834	A	G	ENSMUST00000023243.10	1	ENSMUSG00000022579	missense	T/A	133	Gpihbp1	ENSMUST00000023243.10:c.397A>G	ENSMUSP00000023243.4:p.Thr133Ala	H-2-Db	9	10	2	SALCNIPPW	STLCNIPPW	SMMPMBEC	43.709	249.787	5.715	134	0.216	85.973	425.163	4.945	1274.99	88.65	308.8	114.3	541.5268566	83.29520473	249.7870966	43.70891238	M8	0.457142857	0.957142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.227	134	1	0	0	15qD3	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr14	79768259	79768259	C	A	ENSMUST00000039568.10	1	ENSMUSG00000036422	missense	K/N	896	Pcdh8	ENSMUST00000039568.10:c.2688G>T	ENSMUSP00000045333.5:p.Lys896Asn	H-2-Db	9	7	5	VAVWNGHSF	VAVWKGHSF	NetMHC	122.71	14681.78	119.646	97	0.247	260.137	10653.193	40.952	14681.78	122.71	12111	287.6	8009.76916	246.388254	9195.38675	273.8861051	M8	-0.257142857	0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.251	97	0	0	NA	14qD3	chr14-53336808-123299668	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr14	53649839	53649839	GT	G	ENSMUST00000103660.3	NA	ENSMUSG00000076848	FS	V/X	72	Trav15-2-dv6-2	ENSMUST00000103660.3:c.218del	ENSMUSP00000100437.2:p.Phe73SerfsTer20	H-2-Db	9	12	1	SLFTNLLLI	NA	NetMHCpan	177	NA	NA	253	0.439	251.951	NA	NA	NA	363.11	NA	177	NA	266.4526231	NA	237.4488114	M8	2.071428571	2.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.423	253	0	0	NA	14qC2	chr14-53336808-123299668	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr14	53649839	53649839	GT	G	ENSMUST00000103660.3	NA	ENSMUSG00000076848	FS	V/X	72	Trav15-2-dv6-2	ENSMUST00000103660.3:c.218del	ENSMUSP00000100437.2:p.Phe73SerfsTer20	H-2-Kb	8	10	3	MVSLFTNL	NA	NetMHC	20.17	NA	NA	253	0.439	40.455	NA	NA	NA	20.17	NA	22.6	NA	58.30959165	NA	60.21989584	M8	1.371428571	1.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.423	253	0	0	NA	14qC2	chr14-53336808-123299668	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr14	52036009	52036009	A	G	ENSMUST00000214071.1	5	ENSMUSG00000044286	missense	M/T	34	Olfr221	ENSMUST00000214071.1:c.101T>C	ENSMUSP00000150675.1:p.Met34Thr	H-2-Kb	8	10	2	VTYAITVL	VMYAITVL	NetMHCpan	26.2	23.8	0.908	84	0.369	60.149	92.464	1.537	54.39	47.73	23.8	26.2	137.3219621	75.63799359	130.5389154	72.56713881	M8	1.657142857	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.37	84	0	0	NA	14qC2	chr14-3072210-52852156	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr14	65975611	65975611	T	G	ENSMUST00000022616.13	1	ENSMUSG00000022037	missense	F/V	149	Clu	ENSMUST00000022616.13:c.445T>G	ENSMUSP00000022616.6:p.Phe149Val	H-2-Kb	8	8	4	SSPVYFWM	SSPFYFWM	NetMHCpan	60.6	40.4	0.667	126	0.262	147.752	201.93	1.367	223.25	116.55	40.4	60.6	180.6092545	178.9534189	234.2825811	206.8902384	M8	0.614285714	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.263	126	9472	3214	0.339315878	14qD1	chr14-53336808-123299668	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr14	53649839	53649839	GT	G	ENSMUST00000103660.3	NA	ENSMUSG00000076848	FS	V/X	72	Trav15-2-dv6-2	ENSMUST00000103660.3:c.218del	ENSMUSP00000100437.2:p.Phe73SerfsTer20	H-2-Kb	8	11	2	VSLFTNLL	NA	NetMHCpan	51.6	NA	NA	253	0.439	158.7	NA	NA	NA	122.98	NA	51.6	NA	194.4195797	NA	220.1608027	M8	1.314285714	1.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.423	253	0	0	NA	14qC2	chr14-53336808-123299668	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr14	123515710	123515710	C	A	ENSMUST00000000201.6	5	ENSMUSG00000000197	missense	R/I	288	Nalcn	ENSMUST00000000201.6:c.863G>T	ENSMUSP00000000201.5:p.Arg288Ile	H-2-Kb	8	6	6	VFLMYIAI	VFLMYRAI	SMM	80.675	70.265	0.871	132	0.311	117.27	70.672	0.603	62.95	152.93	94.9	239.3	70.26515361	80.67519058	71.07878574	81.60936526	M8	2.571428571	2.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.303	132	0	0	NA	14qE5	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	sgMsh2	cell line
chr14	66004100	66004100	T	A	ENSMUST00000059970.8	1	ENSMUSG00000034450	missense	H/L	103	Gulo	ENSMUST00000059970.8:c.308A>T	ENSMUSP00000060912.7:p.His103Leu	H-2-Kb	8	11	1	LGLALSNL	HGLALSNL	NetMHC	204.75	1235.08	6.032	60	0.267	230.187	887.134	3.854	1235.08	204.75	1375.1	217.3	539.1877292	243.0748352	512.5544401	245.8895091	M8	1.214285714	1.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.283	60	1	0	0	14qD1	chr14-53336808-123299668	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr15	3325898	3325898	C	A	ENSMUST00000069451.10	1	ENSMUSG00000055737	missense	R/M	301	Ghr	ENSMUST00000069451.10:c.902G>T	ENSMUSP00000069457.4:p.Arg301Met	H-2-Kb	8	4	8	VIFSKQQM	VIFSKQQR	NetMHCpan	188.2	12750.8	67.751	185	0.173	363.498	6741.575	18.546	9458.39	228.41	12750.8	188.2	2790.872523	500.8872766	4024.76011	498.5859086	M8	-0.357142857	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.159	185	56	0	0	15qA1	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.76094227	sgMsh2	cell line
chr14	108912776	108912776	T	C	ENSMUST00000100322.3	NA	ENSMUSG00000075478	missense	T/A	168	Slitrk1	ENSMUST00000100322.3:c.502A>G	ENSMUSP00000097897.2:p.Thr168Ala	H-2-Kb	8	9	3	ISALPANV	ISTLPANV	SMM	194.868	217.641	1.117	80	0.3	278.341	278.464	1	284.82	287.07	1132.8	711.5	217.6406428	194.8677632	272.1071791	269.6124854	M8	0.814285714	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.311	80	0	0	NA	14qE3	chr14-53336808-123299668	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr15	76185668	76185668	G	A	ENSMUST00000073418.12	5	ENSMUSG00000022565	missense	R/W	1153	Plec	ENSMUST00000073418.12:c.3457C>T	ENSMUSP00000073124.6:p.Arg1153Trp	H-2-Kb	8	7	5	VHRLWLPL	VHRLRLPL	SMM	145.794	747.722	5.129	53	0.283	184.366	805.542	4.369	756.53	292.75	951.2	214.3	747.7217263	145.794117	854.5549615	154.4329616	M8	0.171428571	0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe	3	0.319	53	206	51	0.247572816	15qD3	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr15	55084094	55084094	A	G	ENSMUST00000023059.12	1	ENSMUSG00000022422	missense	V/A	230	Dscc1	ENSMUST00000023059.12:c.689T>C	ENSMUSP00000023059.6:p.Val230Ala	H-2-Kb	8	6	6	WSLDRAPL	WSLDRVPL	SMMPMBEC	220.668	636.414	2.884	126	0.444	309.984	790.887	2.551	1192.99	347.86	795.2	403.9	786.5747483	272.1071791	636.4144033	220.6683258	M8	-0.142857143	-0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.441	126	0	0	NA	15qD1	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	2	1	sgMsh2	cell line
chr15	16823315	16823315	CA	C	ENSMUST00000228307.1	NA	ENSMUSG00000025370	FS	K/X	128	Cdh9	ENSMUST00000228307.1:c.383del	ENSMUSP00000154022.1:p.Lys128ArgfsTer3	H-2-Kb	9	4	8	SLYILRARL	SLYILRAKA	NetMHC	34.72	2987.65	86.05	190	0.153	138.433	2844.375	20.547	2987.65	34.72	2701.1	48.7	4386.417848	267.9847002	2662.257137	228.165512	M8	0.514285714	1.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.16	190	0	0	NA	15qA2	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.76572807	sgMsh2	cell line
chr15	3325898	3325898	C	A	ENSMUST00000069451.10	1	ENSMUSG00000055737	missense	R/M	301	Ghr	ENSMUST00000069451.10:c.902G>T	ENSMUSP00000069457.4:p.Arg301Met	H-2-Kb	9	4	8	VIFSKQQMI	VIFSKQQRI	NetMHC	128.02	112.77	0.881	185	0.173	167.824	129.667	0.773	112.77	128.02	141	229.5	118.334124	147.6080354	149.021867	188.039895	M8	-0.357142857	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.159	185	56	0	0	15qA1	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.76094227	sgMsh2	cell line
chr14	57480701	57480701	T	C	ENSMUST00000122063.7	1	ENSMUSG00000040040	missense	M/T	577	Ift88	ENSMUST00000122063.7:c.1730T>C	ENSMUSP00000113768.1:p.Met577Thr	H-2-Kb	9	5	7	QAIEWLTQL	QAIEWLMQL	NetMHC	144.21	130.29	0.903	166	0.343	232.952	219.487	0.942	130.29	144.21	188.3	221.5	250.6744092	244.4049514	289.2344371	260.7654204	M8	0.5	0.5	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.373	166	12	4	0.333333333	14qC3	chr14-53336808-123299668	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr14	56761852	56761852	A	C	ENSMUST00000022507.12	1	ENSMUSG00000021938	missense	L/V	316	Pspc1	ENSMUST00000022507.12:c.946T>G	ENSMUSP00000022507.5:p.Leu316Val	H-2-Kb	9	11	1	VMLMRQDLM	LMLMRQDLM	SMM	117.249	337.373	2.877	143	0.385	170.678	505.031	2.959	672.69	215.68	1505.6	463.1	337.3727491	117.2492302	325.2744865	125.6753201	M8	-0.014285714	0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.398	143	24	0	0	14qC3	chr14-53336808-123299668	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr14	123515710	123515710	C	A	ENSMUST00000000201.6	5	ENSMUSG00000000197	missense	R/I	288	Nalcn	ENSMUST00000000201.6:c.863G>T	ENSMUSP00000000201.5:p.Arg288Ile	H-2-Kb	9	5	7	WVFLMYIAI	WVFLMYRAI	SMM	126.506	178.694	1.413	132	0.311	190.437	187.572	0.985	117.77	251.38	308	1796.8	178.6940122	126.5056726	196.4490803	129.4941055	M8	2.571428571	2.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.303	132	0	0	NA	14qE5	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	sgMsh2	cell line
chr15	63824978	63824978	T	C	ENSMUST00000188691.1	1	ENSMUSG00000056293	missense	K/R	448	Gsdmc2	ENSMUST00000188691.1:c.1343A>G	ENSMUSP00000140487.1:p.Lys448Arg	H-2-Kb	9	4	8	STWDLEARM	STWDLEAKM	NetMHC	270.97	630.27	2.326	557	0.424	393.946	686.739	1.743	630.27	270.97	949.5	462.3	743.2073569	407.4834739	574.4470454	380.4083139	M8	-0.7	-0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.418	557	0	0	NA	15qD1	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	2	1	sgMsh2	cell line
chr15	76622252	76622252	GT	G	ENSMUST00000078803.4	1	ENSMUSG00000115987	FS	N/X	216	Vps28	ENSMUST00000078803.4:c.647del	ENSMUSP00000077856.3:p.Asn216ThrfsTer?	H-2-Kb	9	5	7	SAYNAFTAS	SAYNAFNRF	SMM	204.226	61.96	0.303	176	0.21	329.815	52.55	0.159	43.14	281.84	34.5	452.4	61.95979897	204.225515	87.54876014	377.7896015	M8	0.014285714	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.215	176	113	2	0.017699115	15qD3	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr14	50453867	50453867	G	T	ENSMUST00000214792.1	5	ENSMUSG00000095917	missense	A/S	272	Olfr740	ENSMUST00000214792.1:c.814G>T	ENSMUSP00000148916.1:p.Ala272Ser	H-2-Kb	9	11	1	SGMQKLVTL	AGMQKLVTL	NetMHCpan	247.6	429.1	1.733	235	0.277	423.556	718.749	1.697	707.62	313.47	429.1	247.6	968.523137	625.3310593	729.8775406	533.6419961	M8	0.8	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.28	235	0	0	NA	14qC1	chr14-3072210-52852156	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr15	76185668	76185668	G	A	ENSMUST00000073418.12	5	ENSMUSG00000022565	missense	R/W	1153	Plec	ENSMUST00000073418.12:c.3457C>T	ENSMUSP00000073124.6:p.Arg1153Trp	H-2-Kb	9	6	6	TVHRLWLPL	TVHRLRLPL	NetMHCpan	140.4	473.4	3.372	53	0.283	302.662	666.334	2.202	585.79	318.08	473.4	140.4	790.8789199	332.7438214	746.8785726	287.2433612	M8	0.171428571	0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe	3	0.319	53	206	51	0.247572816	15qD3	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr14	53649839	53649839	GT	G	ENSMUST00000103660.3	NA	ENSMUSG00000076848	FS	V/X	72	Trav15-2-dv6-2	ENSMUST00000103660.3:c.218del	ENSMUSP00000100437.2:p.Phe73SerfsTer20	H-2-Kb	9	10	3	MVSLFTNLL	NA	NetMHCpan	380.3	NA	NA	253	0.439	396.63	NA	NA	NA	390.44	NA	380.3	NA	402.8190492	NA	622.6586131	M8	1.314285714	1.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.423	253	0	0	NA	14qC2	chr14-53336808-123299668	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr14	53649839	53649839	GT	G	ENSMUST00000103660.3	NA	ENSMUSG00000076848	FS	V/X	72	Trav15-2-dv6-2	ENSMUST00000103660.3:c.218del	ENSMUSP00000100437.2:p.Phe73SerfsTer20	H-2-Kb	9	9	4	EMVSLFTNL	NA	NetMHCpan	218	NA	NA	253	0.439	413.67	NA	NA	NA	403.59	NA	218	NA	423.7502818	NA	493.4577793	M8	1.371428571	1.371428571	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.423	253	0	0	NA	14qC2	chr14-53336808-123299668	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr14	52036009	52036009	A	G	ENSMUST00000214071.1	5	ENSMUSG00000044286	missense	M/T	34	Olfr221	ENSMUST00000214071.1:c.101T>C	ENSMUSP00000150675.1:p.Met34Thr	H-2-Kb	9	6	6	VVFLVTYAI	VVFLVMYAI	NetMHC	404.46	257.9	0.638	84	0.369	474.826	410.59	0.865	257.9	404.46	656.7	462	397.2921646	487.6519891	423.8869047	600.1364431	M8	2.157142857	2.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.37	84	0	0	NA	14qC2	chr14-3072210-52852156	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr14	53649839	53649839	GT	G	ENSMUST00000103660.3	NA	ENSMUSG00000076848	FS	V/X	72	Trav15-2-dv6-2	ENSMUST00000103660.3:c.218del	ENSMUSP00000100437.2:p.Phe73SerfsTer20	H-2-Kb	9	11	2	VSLFTNLLL	NA	SMM	293.839	NA	NA	253	0.439	363.221	NA	NA	NA	414.22	NA	381.1	NA	293.8393807	NA	345.3424772	M8	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.423	253	0	0	NA	14qC2	chr14-53336808-123299668	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr16	16673096	16673096	T	C	ENSMUST00000206365.2	3	ENSMUSG00000048101	missense	K/R	295	Olfr19	ENSMUST00000206365.2:c.884A>G	ENSMUSP00000145655.2:p.Lys295Arg	H-2-Db	9	6	6	YSLRNRDLM	YSLRNKDLM	NetMHC	3.3	4.46	1.352	155	0.284	5.853	8.806	1.505	4.46	3.3	5.9	4.6	11.71170164	7.105914866	14.27479894	9.496640546	M8	-0.928571429	-0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.277	155	0	0	NA	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr17	18185134	18185134	GA	G	ENSMUST00000169686.2	5	ENSMUSG00000091350	FS	K/X	847	Vmn2r92	ENSMUST00000169686.2:c.2548del	ENSMUSP00000128685.1:p.Thr850HisfsTer34	H-2-Db	9	24	0	YSFRNEFCF	NA	NetMHC	63.68	NA	NA	103	0.34	173.294	NA	NA	NA	63.68	NA	82	NA	308.7592661	NA	264.5879126	M8	-0.085714286	-0.085714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.354	103	0	0	NA	17qA3.2	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr17	24717463	24717463	C	A	ENSMUST00000008626.9	1	ENSMUSG00000008482	missense	R/I	50	Rnf151	ENSMUST00000008626.9:c.149G>T	ENSMUSP00000008626.8:p.Arg50Ile	H-2-Db	9	9	3	LAIQNTCPC	LARQNTCPC	SMMPMBEC	115.231	1529.572	13.274	195	0.292	213.984	4350.8	20.332	14789.72	234.05	6332.3	411.5	2369.299703	193.9188379	1529.572264	115.2311776	M8	0.028571429	0.7	FALSE	TRUE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.314	195	0	0	NA	17qA3.3	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr16	59543197	59543197	AT	A	ENSMUST00000172910.2	5	ENSMUSG00000022723	FS	K/X	2441	Crybg3	ENSMUST00000172910.2:c.7323del	ENSMUSP00000156047.1:p.Lys2441AsnfsTer11	H-2-Db	9	7	5	AAEMNHCIL	NA	NetMHCpan	226	NA	NA	84	0.345	388.867	NA	NA	NA	644.6	NA	226	NA	423.2724481	NA	354.4622582	M8	0.357142857	0.357142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.361	84	0	0	NA	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr16	3592590	3592590	A	G	ENSMUST00000216259.1	5	ENSMUSG00000051003	missense	S/G	65	Olfr161	ENSMUST00000216259.1:c.193A>G	ENSMUSP00000150825.1:p.Ser65Gly	H-2-Db	9	8	4	FFLGNLSFV	FFLSNLSFV	SMM	191.699	80.282	0.419	208	0.221	456.264	114.023	0.25	99.94	647.94	502	1445.2	80.28233585	191.6990674	128.1061561	264.5879126	M8	1.414285714	1.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.229	208	0	0	NA	16qA1	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	sgMsh2	cell line
chr16	3592590	3592590	A	G	ENSMUST00000216259.1	5	ENSMUSG00000051003	missense	S/G	65	Olfr161	ENSMUST00000216259.1:c.193A>G	ENSMUSP00000150825.1:p.Ser65Gly	H-2-Kb	8	6	6	MYFFLGNL	MYFFLSNL	NetMHCpan	34	14.7	0.432	208	0.221	89.071	59.088	0.663	49.51	88.66	14.7	34	68.66572344	89.4828896	80.11982647	98.3422182	M8	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.229	208	0	0	NA	16qA1	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	sgMsh2	cell line
chr16	90767027	90767027	CA	C	ENSMUST00000140920.1	5	ENSMUSG00000039929	FS	L/X	1616	Urb1	ENSMUST00000140920.1:c.4847del	ENSMUSP00000114717.1:p.Leu1616ArgfsTer37	H-2-Kb	8	35	0	MTPAFFSI	NA	NetMHCpan	58.1	NA	NA	69	0.188	155.093	NA	NA	NA	108.47	NA	58.1	NA	201.7158386	NA	223.738128	M8	1.257142857	1.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.206	69	8	0	0	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.98587489	sgMsh2	cell line
chr16	58926453	58926453	T	C	ENSMUST00000205986.3	2	ENSMUSG00000090951	missense	I/M	39	Olfr181	ENSMUST00000205986.3:c.117A>G	ENSMUSP00000145877.2:p.Ile39Met	H-2-Kb	8	5	7	AIYLVTMV	AIYLVTIV	NetMHC	143.87	786.44	5.466	358	0.218	259.507	804.095	3.099	786.44	143.87	1131.3	680.2	620.4974485	238.6382195	821.7505435	280.3754606	M8	2.371428571	2.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.211	358	0	0	NA	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr15	100190056	100190056	T	C	ENSMUST00000100203.9	1	ENSMUSG00000023026	missense	V/A	957	Dip2b	ENSMUST00000100203.9:c.2870T>C	ENSMUSP00000097777.3:p.Val957Ala	H-2-Kb	8	7	5	ASVMAGNL	ASVMVGNL	NetMHC	249.4	155.85	0.625	228	0.175	304.177	234.725	0.772	155.85	249.4	254.3	361	261.0597994	332.4604589	215.149331	275.892567	M8	1	1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.183	228	35	5	0.142857143	15qF1	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.87580148	sgMsh2	cell line
chr16	3592523	3592523	GA	G	ENSMUST00000216259.1	5	ENSMUSG00000051003	FS	G/X	42	Olfr161	ENSMUST00000216259.1:c.128del	ENSMUSP00000150825.1:p.Asn43ThrfsTer46	H-2-Kb	8	47	0	LSLRYWPF	NA	NetMHCpan	130.4	NA	NA	173	0.225	210.41	NA	NA	NA	465.62	NA	130.4	NA	248.7367755	NA	172.0838049	M8	-0.357142857	-0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.221	173	0	0	NA	16qA1	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	sgMsh2	cell line
chr17	24717463	24717463	C	A	ENSMUST00000008626.9	1	ENSMUSG00000008482	missense	R/I	50	Rnf151	ENSMUST00000008626.9:c.149G>T	ENSMUSP00000008626.8:p.Arg50Ile	H-2-Kb	8	4	8	CIFRWLAI	CIFRWLAR	NetMHCpan	193.5	5967.9	30.842	195	0.292	291.699	2961.469	10.152	4268.16	476.86	5967.9	193.5	974.4061133	282.9697428	1654.778997	300.4277187	M8	1.714285714	1.714285714	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.314	195	0	0	NA	17qA3.3	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr16	58915901	58915901	GA	G	ENSMUST00000171656.2	2	ENSMUSG00000090629	FS	S/X	247	Olfr180	ENSMUST00000171656.2:c.739del	ENSMUSP00000128358.1:p.Ser247LeufsTer31	H-2-Kb	8	31	0	KTYQWLYF	NA	NetMHCpan	200.7	NA	NA	271	0.251	382.912	NA	NA	NA	489.31	NA	200.7	NA	445.3895263	NA	320.4350395	M8	-0.157142857	-0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.245	271	0	0	NA	16qC1.2	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr16	58915901	58915901	GA	G	ENSMUST00000171656.2	2	ENSMUSG00000090629	FS	S/X	247	Olfr180	ENSMUST00000171656.2:c.739del	ENSMUSP00000128358.1:p.Ser247LeufsTer31	H-2-Kb	8	29	0	VIKTYQWL	NA	SMM	154.433	NA	NA	271	0.251	282.366	NA	NA	NA	556.53	NA	386.6	NA	154.4329616	NA	178.1312026	M8	-0.285714286	-0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.245	271	0	0	NA	16qC1.2	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr16	32625064	32625064	A	G	ENSMUST00000023486.14	1	ENSMUSG00000022797	missense	E/G	562	Tfrc	ENSMUST00000023486.14:c.1685A>G	ENSMUSP00000023486.8:p.Glu562Gly	H-2-Kb	8	5	7	VSFCFCGD	VSFCFCED	SMM	38.525	86.048	2.234	136	0.265	312.812	723.513	2.313	1358.77	587.1	1915.6	1169.1	86.04784535	38.52476516	88.25513833	38.52476516	M8	0.842857143	1.942857143	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.256	136	92	17	0.184782609	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr16	32961669	32961669	A	G	ENSMUST00000135193.8	5	ENSMUSG00000022801	missense	Y/C	271	Lrch3	ENSMUST00000135193.8:c.812A>G	ENSMUSP00000130708.1:p.Tyr271Cys	H-2-Kb	8	5	7	KIHIFKCL	KIHIFKYL	SMMPMBEC	256.886	92.628	0.361	272	0.239	319.381	76.184	0.239	59.74	598.73	59.4	324.9	102.9769442	313.8629122	92.62751223	256.8857419	M8	1.571428571	1.571428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.237	272	46	9	0.195652174	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr17	20994614	20994614	T	C	ENSMUST00000237195.1	NA	ENSMUSG00000045575	missense	I/V	25	Vmn1r233	ENSMUST00000237195.1:c.73A>G	ENSMUSP00000158452.1:p.Ile25Val	H-2-Kb	9	3	9	VIILFQTMV	VIILFQTMI	NetMHC	46.04	63.11	1.371	216	0.227	142.11	130.172	0.916	63.11	46.04	89.3	129.3	171.044849	154.920896	194.6480243	188.4733717	M8	1.857142857	2.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.228	216	0	0	NA	17qA3.2	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr16	3592590	3592590	A	G	ENSMUST00000216259.1	5	ENSMUSG00000051003	missense	S/G	65	Olfr161	ENSMUST00000216259.1:c.193A>G	ENSMUSP00000150825.1:p.Ser65Gly	H-2-Kb	9	5	7	PMYFFLGNL	PMYFFLSNL	SMM	22.862	15.35	0.671	208	0.221	43.133	26.875	0.623	34.5	54.11	28.5	71.6	15.35005727	22.86177783	25.24933823	32.15511003	M8	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.229	208	0	0	NA	16qA1	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	sgMsh2	cell line
chr17	13225949	13225949	T	C	ENSMUST00000080647.4	1	ENSMUSG00000073458	missense	C/R	138	Smok2a	ENSMUST00000080647.4:c.412T>C	ENSMUSP00000094432.2:p.Cys138Arg	H-2-Kb	9	8	4	INYRHNQGI	INYCHNQGI	NetMHCpan	30	54.9	1.83	1121	0.13	105.887	125.761	1.188	188.04	80.78	54.9	30	133.6934098	144.9138851	117.8284053	130.9935766	M8	-1.7	-1.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.129	1121	0	0	NA	17qA1	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.617368257	sgMsh2	cell line
chr15	98126427	98126427	G	T	ENSMUST00000051226.7	1	ENSMUSG00000033065	missense	G/C	439	Pfkm	ENSMUST00000051226.7:c.1315G>T	ENSMUSP00000059801.6:p.Gly439Cys	H-2-Kb	9	7	5	VVHDCFEGL	VVHDGFEGL	NetMHC	110.43	431.59	3.908	160	0.138	228.926	428.227	1.871	431.59	110.43	423.6	235.2	439.6529586	227.0439846	424.864065	230.8075441	M8	-0.214285714	0.5	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.138	160	147	31	0.210884354	15qF1	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.660440461	sgMsh2	cell line
chr16	20686853	20686853	A	G	ENSMUST00000115460.7	5	ENSMUSG00000045983	missense	I/V	1292	Eif4g1	ENSMUST00000115460.7:c.3874A>G	ENSMUSP00000111120.1:p.Ile1292Val	H-2-Kb	9	11	1	VAREHMGRL	IAREHMGRL	SMMPMBEC	106.967	141.661	1.324	120	0.217	116.472	149.63	1.285	127.43	113.79	157.6	170.6	175.4324789	119.1543769	141.6609011	106.9670454	M8	-1.485714286	-0.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.219	120	393	93	0.236641221	16qB1	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr16	79035203	79035203	A	G	ENSMUST00000023566.10	1	ENSMUSG00000022857	missense	L/P	355	Tmprss15	ENSMUST00000023566.10:c.1064T>C	ENSMUSP00000023566.4:p.Leu355Pro	H-2-Kb	9	4	8	TIRIFSNPV	TIRIFSNLV	NetMHC	135.49	309.61	2.285	52	0.231	332.745	474.129	1.425	309.61	135.49	800.1	373	372.4860392	292.4893114	575.7712826	413.2853397	M8	0.157142857	0.328571429	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.24	52	0	0	NA	16qC3.2	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr16	32625064	32625064	A	G	ENSMUST00000023486.14	1	ENSMUSG00000022797	missense	E/G	562	Tfrc	ENSMUST00000023486.14:c.1685A>G	ENSMUSP00000023486.8:p.Glu562Gly	H-2-Kb	9	5	7	VSFCFCGDA	VSFCFCEDA	NetMHC	139.07	316.88	2.279	136	0.265	227.503	410.548	1.805	316.88	139.07	392.3	167.1	644.3324442	446.7967444	428.7952838	287.9055255	M8	1.214285714	1.942857143	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.256	136	92	17	0.184782609	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr17	20541376	20541376	T	C	ENSMUST00000167093.2	5	ENSMUSG00000090572	missense	K/R	573	Vmn2r109	ENSMUST00000167093.2:c.1718A>G	ENSMUSP00000132641.1:p.Lys573Arg	H-2-Kb	9	5	7	KNRCFQRAL	KNRCFQKAL	NetMHC	165.44	352.48	2.131	166	0.277	462.293	616.338	1.333	352.48	165.44	565.7	327.4	666.9756823	597.1865254	871.4651012	849.6694433	M8	-0.228571429	-0.228571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.288	166	0	0	NA	17qA3.2	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr17	3437282	3437282	C	T	ENSMUST00000072156.6	1	ENSMUSG00000023800	missense	R/C	693	Tiam2	ENSMUST00000072156.6:c.2077C>T	ENSMUSP00000072020.6:p.Arg693Cys	H-2-Kb	9	9	3	RMCCYLASL	RMRCYLASL	NetMHCpan	149.3	62	0.415	102	0.275	207.599	123.112	0.593	79.84	196.8	62	149.3	166.383402	308.3968972	189.7798067	218.3986754	M8	1.757142857	1.757142857	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.278	102	20	5	0.25	17qA1	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr17	19053653	19053653	C	A	ENSMUST00000170424.2	5	ENSMUSG00000096717	missense	S/Y	54	Vmn2r98	ENSMUST00000170424.2:c.161C>A	ENSMUSP00000131261.1:p.Ser54Tyr	H-2-Kb	9	7	5	HTFYYLKKM	HTFYSLKKM	NetMHCpan	162.4	2676.5	16.481	177	0.141	315.655	1812.209	5.741	2171.47	303.78	2676.5	162.4	1432.550696	345.2311699	1452.947761	327.5291816	M8	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.147	177	0	0	NA	17qA3.2	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.703512664	sgMsh2	cell line
chr16	58915901	58915901	GA	G	ENSMUST00000171656.2	2	ENSMUSG00000090629	FS	S/X	247	Olfr180	ENSMUST00000171656.2:c.739del	ENSMUSP00000128358.1:p.Ser247LeufsTer31	H-2-Kb	9	31	0	KTYQWLYFI	NA	NetMHCpan	171.2	NA	NA	271	0.251	384.332	NA	NA	NA	307.23	NA	171.2	NA	461.4344339	NA	521.4948213	M8	0.585714286	0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.245	271	0	0	NA	16qC1.2	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr16	3592523	3592523	GA	G	ENSMUST00000216259.1	5	ENSMUSG00000051003	FS	G/X	42	Olfr161	ENSMUST00000216259.1:c.128del	ENSMUSP00000150825.1:p.Asn43ThrfsTer46	H-2-Kb	9	39	0	WMYASPPPL	NA	NetMHCpan	187.9	NA	NA	173	0.225	209.738	NA	NA	NA	330.1	NA	187.9	NA	192.357888	NA	227.1171867	M8	-0.185714286	-0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.221	173	0	0	NA	16qA1	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	sgMsh2	cell line
chr16	43898221	43898221	C	A	ENSMUST00000132859.7	5	ENSMUSG00000022701	missense	S/Y	4	Ccdc191	ENSMUST00000132859.7:c.11C>A	ENSMUSP00000116078.1:p.Ser4Tyr	H-2-Kb	9	2	3	MTYMKKELV	MTSMKKELV	NetMHC	416.43	10480.62	25.168	288	0.257	433.746	8552.231	19.717	10480.62	416.43	14641.3	616.9	6623.84254	440.6664633	5600.799166	426.8251484	M8	-0.385714286	-0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.265	288	23	2	0.086956522	16qB4	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr16	21766387	21766387	T	C	ENSMUST00000023559.6	1	ENSMUSG00000022853	missense	K/R	248	Ehhadh	ENSMUST00000023559.6:c.743A>G	ENSMUSP00000023559.5:p.Lys248Arg	H-2-Kb	9	8	4	VAIREEAKL	VAIKEEAKL	SMMPMBEC	390.167	363.287	0.931	174	0.224	440.36	560.026	1.272	711.63	447.1	840.8	676.6	408.4228203	433.6206938	363.2871195	390.1665199	M8	-0.757142857	0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.233	174	3	0	0	16qB1	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr16	58926453	58926453	T	C	ENSMUST00000205986.3	2	ENSMUSG00000090951	missense	I/M	39	Olfr181	ENSMUST00000205986.3:c.117A>G	ENSMUSP00000145877.2:p.Ile39Met	H-2-Kb	9	3	9	FSAIYLVTM	FSAIYLVTI	SMM	339.711	641.372	1.888	358	0.218	388.31	695.236	1.79	910.5	521.58	749.1	436.8	641.3720055	339.7113053	579.7623384	339.8208329	M8	2.028571429	2.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.211	358	0	0	NA	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr17	56632320	56632320	T	G	ENSMUST00000112979.3	1	ENSMUSG00000040828	missense	F/V	50	Catsperd	ENSMUST00000112979.3:c.148T>G	ENSMUSP00000108603.2:p.Phe50Val	H-2-Db	9	5	7	YAFPNTVVL	YAFPNTFVL	NetMHCpan	9.1	7.6	0.835	174	0.23	33.615	30.922	0.92	12.57	10.27	7.6	9.1	49.27424743	62.03260224	49.83907806	56.96000254	M8	1.314285714	1.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.22	174	4	3	0.75	17qD	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr18	37021442	37021442	T	C	ENSMUST00000047614.3	1	ENSMUSG00000103310	missense	Y/H	405	Pcdha12	ENSMUST00000047614.3:c.1213T>C	ENSMUSP00000047609.1:p.Tyr405His	H-2-Db	9	5	7	STFKNYHSL	STFKNYYSL	NetMHCpan	36.5	34.8	0.953	242	0.26	221.131	155.833	0.705	81.22	180.1	34.8	36.5	270.7821299	272.659102	230.4464382	262.162156	M8	-0.871428571	-0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.27	242	0	0	NA	18qB2	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr17	84697532	84697532	T	C	ENSMUST00000045714.14	1	ENSMUSG00000024254	missense	F/L	576	Abcg8	ENSMUST00000045714.14:c.1726T>C	ENSMUSP00000035246.8:p.Phe576Leu	H-2-Db	9	10	2	GLMINLDNL	GFMINLDNL	NetMHCpan	367.1	1384.4	3.771	107	0.243	482.343	875.659	1.815	1955.18	698.93	1384.4	367.1	313.0545354	536.5621085	366.91883	428.1244195	M8	0.5	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.24	107	0	0	NA	17qE4	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr17	84697532	84697532	T	C	ENSMUST00000045714.14	1	ENSMUSG00000024254	missense	F/L	576	Abcg8	ENSMUST00000045714.14:c.1726T>C	ENSMUSP00000035246.8:p.Phe576Leu	H-2-Kb	8	4	8	SFYLTAGL	SFYLTAGF	NetMHC	15.37	172.25	11.207	107	0.243	31.057	352.868	11.362	172.25	15.37	298.6	61	482.7696948	29.69887511	407.1364636	32.41455024	M8	1.4	1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.24	107	0	0	NA	17qE4	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr17	37701005	37701005	AT	A	ENSMUST00000213732.1	5	ENSMUSG00000059964	FS	F/X	112	Olfr119	ENSMUST00000213732.1:c.339del	ENSMUSP00000150099.1:p.Phe113LeufsTer3	H-2-Kb	8	5	8	QMFFFTFL	QMFFFTFF	NetMHCpan	9.9	98.7	9.97	497	0.26	18.421	250.269	13.586	184.5	17.4	98.7	9.9	316.0385059	19.44195797	349.7357273	27.84453695	M8	2.314285714	2.314285714	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.262	497	0	0	NA	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr17	38082114	38082114	A	G	ENSMUST00000216523.1	5	ENSMUSG00000043312	missense	M/T	288	Olfr131	ENSMUST00000216523.1:c.863T>C	ENSMUSP00000150562.1:p.Met288Thr	H-2-Kb	8	8	4	ITPTLNPL	ITPMLNPL	NetMHC	80.3	53.48	0.666	221	0.271	136.287	121.388	0.891	53.48	80.3	100.3	182.4	146.4670721	126.107234	142.4754378	146.4670721	M8	-0.071428571	0.028571429	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.265	221	0	0	NA	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr17	88479276	88479276	T	G	ENSMUST00000112238.8	1	ENSMUSG00000034998	missense	S/R	211	Foxn2	ENSMUST00000112238.8:c.633T>G	ENSMUSP00000107857.2:p.Ser211Arg	H-2-Kb	8	7	5	SSPQRAAL	SSPQSAAL	NetMHC	93.15	80.17	0.861	122	0.213	159.164	111.694	0.702	80.17	93.15	564.5	437.8	90.7277206	147.8223152	132.6600022	170.5061311	M8	-0.428571429	-0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.211	122	33	12	0.363636364	17qE4	chr17-87745782-94740433	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr17	56777470	56777470	T	C	ENSMUST00000002444.14	1	ENSMUSG00000024206	missense	N/S	668	Rfx2	ENSMUST00000002444.14:c.2003A>G	ENSMUSP00000002444.7:p.Asn668Ser	H-2-Kb	8	6	6	VMGEFSDL	VMGEFNDL	NetMHC	113.49	324.64	2.861	113	0.204	192.202	326.647	1.699	324.64	113.49	576.2	261.7	313.8629122	193.9724271	328.6548155	190.4320313	M8	0.042857143	0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.202	113	2	1	0.5	17qD	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.966731689	sgMsh2	cell line
chr17	42592968	42592968	TA	T	ENSMUST00000068355.7	1	ENSMUSG00000043972	FS	Y/X	159	Opn5	ENSMUST00000068355.7:c.475del	ENSMUSP00000063542.6:p.Tyr159MetfsTer43	H-2-Kb	8	5	7	LAVIWAML	LAVIWAYA	NetMHCpan	147.2	3567.3	24.234	63	0.238	206.513	4062.47	19.672	6717.72	182.49	3567.3	147.2	4557.639811	321.1737185	2604.593785	230.5366617	M8	2.442857143	2.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.254	63	0	0	NA	17qB3	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr17	40228805	40228805	A	G	ENSMUST00000026499.5	1	ENSMUSG00000025433	missense	V/A	167	Crisp3	ENSMUST00000026499.5:c.500T>C	ENSMUSP00000026499.5:p.Val167Ala	H-2-Kb	8	10	2	YACRYCPV	YVCRYCPV	SMMPMBEC	174.478	161.339	0.925	446	0.271	239.579	312.449	1.304	429.13	286.52	494.4	303	195.7672319	192.6371303	161.3392375	174.4777291	M8	0.514285714	0.514285714	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.276	446	0	0	NA	17qB2	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr17	83477824	83477824	T	C	ENSMUST00000096766.11	1	ENSMUSG00000032624	missense	L/P	875	Eml4	ENSMUST00000096766.11:c.2624T>C	ENSMUSP00000094528.4:p.Leu875Pro	H-2-Kb	8	5	7	SIIQWKPV	SIIQWKLV	SMMPMBEC	267.141	735.766	2.754	138	0.225	337.819	1037.14	3.07	1227.56	355.94	1662.3	657.1	846.7203545	319.6980594	735.7664827	267.1406633	M8	0.471428571	0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.215	138	68	11	0.161764706	17qE4	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr17	38304994	38304994	T	C	ENSMUST00000213505.1	5	ENSMUSG00000054940	missense	T/A	156	Olfr137	ENSMUST00000213505.1:c.466A>G	ENSMUSP00000150173.1:p.Thr156Ala	H-2-Kb	8	7	5	CGFTASAL	CGFTTSAL	SMM	193.972	284.931	1.469	157	0.261	240.585	312.177	1.298	583.32	395.88	277.8	199.5	284.9311953	193.9724271	339.4220093	281.6696149	M8	1.185714286	1.185714286	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.259	157	0	0	NA	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr17	37751964	37751964	A	G	ENSMUST00000174675.3	5	ENSMUSG00000060017	missense	I/V	37	Olfr121	ENSMUST00000174675.3:c.109A>G	ENSMUSP00000133865.3:p.Ile37Val	H-2-Kb	8	4	8	CFLLFTLV	CFLLFTLI	SMM	253.945	461.041	1.816	640	0.233	479.578	724.227	1.51	850.4	581.81	2002	2533.9	461.0414792	253.9451951	598.0534499	377.3462166	M8	2.928571429	2.928571429	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.232	640	0	0	NA	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr18	37021442	37021442	T	C	ENSMUST00000047614.3	1	ENSMUSG00000103310	missense	Y/H	405	Pcdha12	ENSMUST00000047614.3:c.1213T>C	ENSMUSP00000047609.1:p.Tyr405His	H-2-Kb	8	8	4	KNYHSLVL	KNYYSLVL	NetMHCpan	150	57	0.38	242	0.26	428.416	356.888	0.833	345.02	673.56	57	150	368.7567681	366.2182643	518.4895408	490.6140712	M8	0.428571429	0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.27	242	0	0	NA	18qB2	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr17	30761096	30761096	GT	G	ENSMUST00000236140.1	NA	ENSMUSG00000033826	FS	F/X	3035	Dnah8	ENSMUST00000236140.1:c.9108del	ENSMUSP00000157469.1:p.Phe3036LeufsTer5	H-2-Kb	8	5	8	TSLDLVFL	TSLDLVFF	SMM	245.89	3997.054	16.255	166	0.205	452.067	3837.777	8.489	5159.69	706.65	3678.5	633.9	3997.053856	245.8895091	3394.220093	270.2340064	M8	2.014285714	2.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.189	166	0	0	NA	17qA3.3	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.904516283	sgMsh2	cell line
chr18	37021442	37021442	T	C	ENSMUST00000047614.3	1	ENSMUSG00000103310	missense	Y/H	405	Pcdha12	ENSMUST00000047614.3:c.1213T>C	ENSMUSP00000047609.1:p.Tyr405His	H-2-Kb	8	6	6	TFKNYHSL	TFKNYYSL	SMM	267.756	194.42	0.726	242	0.26	366.723	239.62	0.653	359	1171.72	262.6	447.2	194.4195797	267.7564861	216.6406749	286.246378	M8	-0.871428571	-0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.27	242	0	0	NA	18qB2	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr18	37021442	37021442	T	C	ENSMUST00000047614.3	1	ENSMUSG00000103310	missense	Y/H	405	Pcdha12	ENSMUST00000047614.3:c.1213T>C	ENSMUSP00000047609.1:p.Tyr405His	H-2-Kb	9	5	7	STFKNYHSL	STFKNYYSL	NetMHCpan	15.4	13.9	0.903	242	0.26	61.313	45.651	0.745	16.12	22.6	13.9	15.4	75.18132925	100.0253316	87.34740358	104.5321782	M8	-0.871428571	-0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.27	242	0	0	NA	18qB2	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr17	37701005	37701005	AT	A	ENSMUST00000213732.1	5	ENSMUSG00000059964	FS	F/X	112	Olfr119	ENSMUST00000213732.1:c.339del	ENSMUSP00000150099.1:p.Phe113LeufsTer3	H-2-Kb	9	4	9	TQMFFFTFL	TQMFFFTFF	NetMHCpan	14.3	117.3	8.203	497	0.26	93.963	252.605	2.688	250.38	40.61	117.3	14.3	271.7127388	161.1053638	254.8296748	147.3160278	M8	2.314285714	2.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.262	497	0	0	NA	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr17	84697532	84697532	T	C	ENSMUST00000045714.14	1	ENSMUSG00000024254	missense	F/L	576	Abcg8	ENSMUST00000045714.14:c.1726T>C	ENSMUSP00000035246.8:p.Phe576Leu	H-2-Kb	9	3	9	NSFYLTAGL	NSFYLTAGF	NetMHC	85.47	432.59	5.061	107	0.243	225.767	521.843	2.311	432.59	85.47	325	89.2	611.0967866	362.3347605	709.9863514	410.4403034	M8	1.4	1.4	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.24	107	0	0	NA	17qE4	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr17	37563942	37563942	T	C	ENSMUST00000213274.1	5	ENSMUSG00000051611	missense	Y/C	123	Olfr112	ENSMUST00000213274.1:c.368A>G	ENSMUSP00000150904.1:p.Tyr123Cys	H-2-Kb	9	6	6	MSYDRCVAI	MSYDRYVAI	NetMHCpan	74.8	9.3	0.124	637	0.25	107.253	21.056	0.196	15.55	99.36	9.3	74.8	32.36756285	151.7434661	26.56134116	115.1463034	M8	0.528571429	0.528571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.252	637	0	0	NA	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr17	37751964	37751964	A	G	ENSMUST00000174675.3	5	ENSMUSG00000060017	missense	I/V	37	Olfr121	ENSMUST00000174675.3:c.109A>G	ENSMUSP00000133865.3:p.Ile37Val	H-2-Kb	9	11	1	VLLMFLVSL	ILLMFLVSL	NetMHC	127.87	166.59	1.303	640	0.233	185.568	235.147	1.267	166.59	127.87	243.7	206.3	294.5167504	200.0368468	226.5948317	171.0999962	M8	2.785714286	3.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.232	640	0	0	NA	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr17	32774731	32774731	T	C	ENSMUST00000159086.9	1	ENSMUSG00000024298	missense	K/R	490	Zfp871	ENSMUST00000159086.9:c.1469A>G	ENSMUSP00000127178.1:p.Lys490Arg	H-2-Kb	9	7	5	SQFQRHKAL	SQFQKHKAL	NetMHC	137.22	270.99	1.975	136	0.265	206.635	341.188	1.651	270.99	137.22	269.6	151.3	460.3731641	307.6876041	411.386466	261.9690589	M8	-0.957142857	-0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.272	136	84	19	0.226190476	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr17	37701005	37701005	AT	A	ENSMUST00000213732.1	5	ENSMUSG00000059964	FS	F/X	112	Olfr119	ENSMUST00000213732.1:c.339del	ENSMUSP00000150099.1:p.Phe113LeufsTer3	H-2-Kb	9	5	8	QMFFFTFLV	QMFFFTFFG	SMM	56.378	416.016	7.379	497	0.26	130.663	1702.349	13.029	3181.25	152.62	2823.6	205	416.0159675	56.37804345	581.0988286	108.7051201	M8	2.642857143	2.642857143	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.262	497	0	0	NA	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr17	84697532	84697532	T	C	ENSMUST00000045714.14	1	ENSMUSG00000024254	missense	F/L	576	Abcg8	ENSMUST00000045714.14:c.1726T>C	ENSMUSP00000035246.8:p.Phe576Leu	H-2-Kb	9	4	8	SFYLTAGLM	SFYLTAGFM	NetMHC	185.37	344.02	1.856	107	0.243	368.163	542.485	1.473	344.02	185.37	582.5	462.1	502.4698412	274.2268658	867.4610828	521.4948213	M8	1.271428571	1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.24	107	0	0	NA	17qE4	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr17	56632320	56632320	T	G	ENSMUST00000112979.3	1	ENSMUSG00000040828	missense	F/V	50	Catsperd	ENSMUST00000112979.3:c.148T>G	ENSMUSP00000108603.2:p.Phe50Val	H-2-Kb	9	3	9	LFYAFPNTV	LFYAFPNTF	NetMHCpan	233	338.6	1.453	174	0.23	281.738	333.442	1.184	338.69	258.61	338.6	233	228.6177783	304.8667072	328.2842143	424.864065	M8	0.242857143	0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.22	174	4	3	0.75	17qD	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr18	25340381	25340381	A	G	ENSMUST00000097643.9	5	ENSMUSG00000033632	missense	N/S	414	AW554918	ENSMUST00000097643.9:c.1241A>G	ENSMUSP00000095248.3:p.Asn414Ser	H-2-Kb	9	10	2	YSWLRTQAM	YNWLRTQAM	NetMHCpan	246.9	389.9	1.579	78	0.321	285.227	354.619	1.243	397.05	289.33	389.9	246.9	301.3769268	283.2109234	319.3375581	287.2433612	M8	-0.3	-0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.363	78	7	2	0.285714286	18qA2	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr18	35739535	35739535	C	A	ENSMUST00000115728.4	1	ENSMUSG00000024349	missense	G/C	15	Tmem173	ENSMUST00000115728.4:c.43G>T	ENSMUSP00000111393.3:p.Gly15Cys	H-2-Kb	9	11	1	CHRSKYVAL	GHRSKYVAL	SMM	254.162	445.769	1.754	168	0.232	347.718	763.45	2.196	1039.09	298.93	2837.6	937.9	445.7691405	254.1616376	487.8092149	396.5062159	M8	-0.1	-0.1	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.237	168	20	4	0.2	18qB2	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr18	24017798	24017798	CA	C	ENSMUST00000066497.11	1	ENSMUSG00000051469	FS	L/X	97	Zfp24	ENSMUST00000066497.11:c.290del	ENSMUSP00000064637.5:p.Leu97TrpfsTer31	H-2-Kb	9	16	0	PSYPRSYRL	NA	SMM	79.82	NA	NA	76	0.25	228.119	NA	NA	NA	511.59	NA	329.4	NA	79.81968324	NA	126.8381795	M8	-1.457142857	-1.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.25	76	60	5	0.083333333	18qA2	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Db	9	5	9	SNVVNHFFV	SNVVNHFFC	NetMHC	33.28	4264.52	128.141	375	0.328	169.809	3110.826	18.32	4264.52	33.28	4326.5	48.8	1957.131469	290.8171406	1310.901318	321.7881152	M8	1.642857143	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.331	375	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr19	59300736	59300736	T	C	ENSMUST00000099274.3	1	ENSMUSG00000074746	missense	Y/C	744	Pdzd8	ENSMUST00000099274.3:c.2231A>G	ENSMUSP00000096880.2:p.Tyr744Cys	H-2-Db	9	4	8	LATSNMECL	LATSNMEYL	NetMHC	39.91	13.44	0.337	417	0.127	220.272	33.702	0.153	13.44	39.91	18.7	202	56.96656068	318.8746537	48.70460214	238.5448253	M8	-0.042857143	-0.042857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.129	417	390	53	0.135897436	19qD3	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.617368257	sgMsh2	cell line
chr18	37680939	37680939	G	T	ENSMUST00000192931.1	1	ENSMUSG00000103037	missense	S/I	161	Pcdhgb1	ENSMUST00000192931.1:c.482G>T	ENSMUSP00000141348.1:p.Ser161Ile	H-2-Db	9	3	9	NSLKMYTVI	NSLKMYTVS	NetMHC	158.89	19903.22	125.264	308	0.445	356.594	9153.28	25.669	19903.22	158.89	14990.9	524.3	2996.539453	391.3992598	3315.660076	321.7881152	M8	1.214285714	1.214285714	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.442	308	2	1	0.5	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr19	44238510	44238510	C	T	ENSMUST00000026220.6	1	ENSMUSG00000025202	missense	T/I	261	Scd3	ENSMUST00000026220.6:c.782C>T	ENSMUSP00000026220.5:p.Thr261Ile	H-2-Db	9	5	7	AVVLNAIWL	AVVLNATWL	NetMHC	160.36	33.85	0.211	145	0.193	350.244	141.494	0.404	33.85	160.36	120.2	490	162.7871051	337.7691648	179.7090714	362.7187449	M8	1.957142857	2.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.193	145	3	1	0.333333333	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.923659485	sgMsh2	cell line
chr19	13502426	13502426	A	G	ENSMUST00000217001.1	2	ENSMUSG00000071629	missense	I/V	28	Olfr1477	ENSMUST00000217001.1:c.82A>G	ENSMUSP00000149565.1:p.Ile28Val	H-2-Kb	8	11	1	VIFTLIYL	IIFTLIYL	SMM	15.267	16.283	1.067	764	0.132	17.014	18.256	1.073	19.54	16.62	27.2	23.8	16.2832091	15.26651821	16.97227266	17.40764414	M8	2.485714286	2.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.133	764	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.636511458	sgMsh2	cell line
chr18	61697778	61697778	T	C	ENSMUST00000025472.6	1	ENSMUSG00000024579	missense	Y/C	341	Pcyox1l	ENSMUST00000025472.6:c.1022A>G	ENSMUSP00000025472.1:p.Tyr341Cys	H-2-Kb	8	5	7	VSLVHGCL	VSLVHGYL	NetMHC	42.26	7.17	0.17	115	0.261	48.333	15.42	0.319	7.17	42.26	15	81.6	15.83944645	48.27696948	17.44777291	48.38825938	M8	1.414285714	1.471428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.253	115	58	14	0.24137931	18qE1	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr19	31083190	31083190	T	C	ENSMUST00000066039.7	NA	ENSMUSG00000053536	missense	V/A	42	Cstf2t	ENSMUST00000066039.7:c.125T>C	ENSMUSP00000093831.3:p.Val42Ala	H-2-Kb	8	10	2	SAVSFRLV	SVVSFRLV	NetMHC	48.4	61.89	1.279	207	0.145	173.249	174.631	1.008	61.89	48.4	95.9	94.3	256.2949211	252.1970487	253.3611374	273.9933359	M8	1.642857143	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.155	207	48	7	0.145833333	19qC1	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.741799068	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	8	13	1	VTFPHYWL	NA	NetMHCpan	13.9	NA	NA	375	0.328	31.617	NA	NA	NA	50.29	NA	13.9	NA	24.5323979	NA	38.70258739	M8	-0.157142857	-0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.331	375	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr19	40913472	40913472	A	C	ENSMUST00000050092.6	2	ENSMUSG00000049164	missense	N/T	615	Zfp518a	ENSMUST00000050092.6:c.1844A>C	ENSMUSP00000055956.6:p.Asn615Thr	H-2-Kb	8	10	2	ITYVNSEL	INYVNSEL	NetMHCpan	34.1	25.6	0.751	451	0.157	58.288	69.414	1.191	66.26	58.4	25.6	34.1	73.74625996	66.18201718	72.56713881	58.17548331	M8	-0.257142857	-0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.163	451	42	0	0	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.780085471	sgMsh2	cell line
chr18	75519813	75519813	T	C	ENSMUST00000165559.2	5	ENSMUSG00000052928	missense	K/E	458	Ctif	ENSMUST00000165559.2:c.1372A>G	ENSMUSP00000129974.1:p.Lys458Glu	H-2-Kb	8	5	7	FAFTAAEL	FAFTAAKL	NetMHC	81.29	76.52	0.941	63	0.302	124.469	90.585	0.728	76.52	81.29	76	111.3	104.6501849	137.6385219	105.6185011	153.0171117	M8	1.114285714	1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.319	63	9	2	0.222222222	18qE3	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr18	56491908	56491908	A	C	ENSMUST00000237355.1	NA	ENSMUSG00000001700	missense	I/L	358	Gramd3	ENSMUST00000237355.1:c.1072A>C	ENSMUSP00000157710.1:p.Ile358Leu	H-2-Kb	8	4	8	AIIVCALL	AIIVCALI	NetMHC	138.87	1449.26	10.436	85	0.353	182.51	1386.404	7.596	1449.26	138.87	2402.7	511.3	1323.548926	204.0515979	924.1447486	160.9681675	M8	3.585714286	3.585714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.344	85	18	2	0.111111111	18qD3	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	8	8	6	VNHFFVTF	VNHFFCDI	NetMHCpan	52.1	72.4	1.39	375	0.328	262.687	291.68	1.11	265.13	217.24	72.4	52.1	318.2291802	353.7854762	330.1718172	308.1342684	M8	0.742857143	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.331	375	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr19	5982837	5982837	A	C	ENSMUST00000041827.7	1	ENSMUSG00000037451	missense	S/A	267	Slc22a20	ENSMUST00000041827.7:c.799T>G	ENSMUSP00000049473.7:p.Ser267Ala	H-2-Kb	8	6	6	VFFLYAWW	VFFLYSWW	SMM	21.22	47.945	2.259	59	0.119	168.912	331.805	1.964	564.13	295.97	4006.7	4116.2	47.94463315	21.21973715	99.48096742	41.85429201	M8	1.157142857	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.143	59	0	0	NA	19qA	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	sgMsh2	cell line
chr18	37941753	37941753	A	G	ENSMUST00000043498.8	1	ENSMUSG00000024454	missense	S/P	312	Hdac3	ENSMUST00000043498.8:c.934T>C	ENSMUSP00000037981.7:p.Ser312Pro	H-2-Kb	8	6	6	WTYETPLL	WTYETSLL	SMMPMBEC	359.534	238.638	0.664	320	0.225	430.684	272.762	0.633	289.23	493.46	348.5	494.9	256.2949211	367.908651	238.6382195	359.5340277	M8	-0.028571429	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.214	320	197	44	0.223350254	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	8	17	0	HYWLFLAL	NA	SMMPMBEC	198.948	NA	NA	375	0.328	324.952	NA	NA	NA	632.06	NA	372.1	NA	277.8049629	NA	198.9481935	M8	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.331	375	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr19	16383254	16383254	G	A	ENSMUST00000025541.5	1	ENSMUSG00000024639	missense	V/M	314	Gnaq	ENSMUST00000025541.5:c.940G>A	ENSMUSP00000025541.5:p.Val314Met	H-2-Kb	8	6	6	ILKMFMDL	ILKMFVDL	NetMHCpan	249.7	319.7	1.28	232	0.172	388.374	474.546	1.222	1460.9	633.96	319.7	249.7	595.3056439	459.9811133	353.7854762	316.7670499	M8	0.971428571	1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.169	232	327	49	0.149847095	19qA	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.808800274	sgMsh2	cell line
chr18	37473936	37473936	T	C	ENSMUST00000050034.2	NA	ENSMUSG00000047033	missense	F/L	74	Pcdhb15	ENSMUST00000050034.2:c.220T>C	ENSMUSP00000059598.1:p.Phe74Leu	H-2-Kb	8	10	2	RLLLLSPL	RFLLLSPL	SMMPMBEC	429.279	192.637	0.449	133	0.18	459.126	249.124	0.543	305.61	971.72	348.4	437.7	163.5836898	480.5515695	192.6371303	429.2793522	M8	2.371428571	2.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.188	133	0	0	NA	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.899730482	sgMsh2	cell line
chr19	3948632	3948632	A	G	ENSMUST00000162708.6	1	ENSMUSG00000036908	missense	K/R	517	Unc93b1	ENSMUST00000162708.6:c.1550A>G	ENSMUSP00000124272.1:p.Lys517Arg	H-2-Kb	9	4	8	SSLPMKARL	SSLPMKAKL	NetMHC	44.92	155.55	3.463	75	0.107	188.011	364.422	1.938	155.55	44.92	303	126.5	455.1033161	249.5226649	425.8434778	282.000579	M8	0.185714286	0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.123	75	22	5	0.227272727	19qA	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	sgMsh2	cell line
chr19	46330262	46330262	T	C	ENSMUST00000026256.8	1	ENSMUSG00000025226	missense	F/L	292	Fbxl15	ENSMUST00000026256.8:c.874T>C	ENSMUSP00000026256.2:p.Phe292Leu	H-2-Kb	9	11	3	AGLAPFVNL	AGFAPFVNL	NetMHC	88.63	26.77	0.302	123	0.171	499.613	173.054	0.346	26.77	88.63	21	113.6	325.1696473	912.2418667	319.3375581	885.62527	M8	1.614285714	1.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.173	123	10	0	0	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.827943476	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	9	13	1	VTFPHYWLF	NA	NetMHCpan	32	NA	NA	375	0.328	35.13	NA	NA	NA	109.74	NA	32	NA	35.08407252	NA	35.17628732	M8	0.342857143	0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.331	375	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr18	37302556	37302556	A	G	ENSMUST00000051754.1	NA	ENSMUSG00000045498	missense	Q/R	525	Pcdhb3	ENSMUST00000051754.1:c.1574A>G	ENSMUSP00000059180.1:p.Gln525Arg	H-2-Kb	9	11	1	RAFEFHVGA	QAFEFHVGA	NetMHCpan	110.2	284.7	2.583	300	0.227	481.759	390.709	0.811	172.28	176.02	284.7	110.2	496.7181164	857.254947	579.7623384	787.4989801	M8	0.642857143	0.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.233	300	2	0	0	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	9	7	7	VVNHFFVTF	VVNHFFCDI	SMM	104.018	301.377	2.897	375	0.328	110.553	279.147	2.525	290.84	180.67	126.9	112.4	301.3769268	104.0183595	267.4545558	108.7051201	M8	0.742857143	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.331	375	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr18	37680939	37680939	G	T	ENSMUST00000192931.1	1	ENSMUSG00000103037	missense	S/I	161	Pcdhgb1	ENSMUST00000192931.1:c.482G>T	ENSMUSP00000141348.1:p.Ser161Ile	H-2-Kb	9	10	2	VIPNPHFSL	VSPNPHFSL	NetMHC	211.65	119.37	0.564	308	0.445	410.119	267.215	0.652	119.37	211.65	107.8	235.3	415.0591573	584.9382211	522.696991	774.9077422	M8	-0.585714286	0.228571429	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.442	308	2	1	0.5	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr19	16383254	16383254	G	A	ENSMUST00000025541.5	1	ENSMUSG00000024639	missense	V/M	314	Gnaq	ENSMUST00000025541.5:c.940G>A	ENSMUSP00000025541.5:p.Val314Met	H-2-Kb	9	5	7	FILKMFMDL	FILKMFVDL	NetMHC	268.8	623.27	2.319	232	0.172	358.268	502.216	1.402	623.27	268.8	645.4	411.6	381.1623536	362.3347605	317.8703353	354.201177	M8	0.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.169	232	327	49	0.149847095	19qA	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.808800274	sgMsh2	cell line
chr18	44847844	44847844	A	G	ENSMUST00000037763.10	1	ENSMUSG00000034653	missense	Q/R	502	Ythdc2	ENSMUST00000037763.10:c.1505A>G	ENSMUSP00000048340.7:p.Gln502Arg	H-2-Kb	9	9	3	FARVFHLIL	FAQVFHLIL	SMM	224.962	422.776	1.879	136	0.272	340.8	495.95	1.455	462.4	364.46	529.5	447.6	422.7756832	224.9624328	563.9622051	317.1392538	M8	1.628571429	1.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.294	136	22	1	0.045454545	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	9	17	0	HYWLFLALV	NA	SMM	304.166	NA	NA	375	0.328	437.286	NA	NA	NA	459.38	NA	1465.1	NA	304.1655332	NA	415.1929781	M8	2.757142857	2.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.331	375	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	9	14	0	TFPHYWLFL	NA	NetMHCpan	353	NA	NA	375	0.328	400.076	NA	NA	NA	462.8	NA	353	NA	426.6875784	NA	373.4650797	M8	0.485714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.331	375	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr18	37941753	37941753	A	G	ENSMUST00000043498.8	1	ENSMUSG00000024454	missense	S/P	312	Hdac3	ENSMUST00000043498.8:c.934T>C	ENSMUSP00000037981.7:p.Ser312Pro	H-2-Kb	9	4	8	RCWTYETPL	RCWTYETSL	SMMPMBEC	408.555	698.634	1.71	320	0.225	457.95	789.442	1.724	880.25	477.4	638	438.5	1244.829868	714.6773197	698.6344547	408.5545015	M8	-0.7	-0.7	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.214	320	197	44	0.223350254	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr18	75519813	75519813	T	C	ENSMUST00000165559.2	5	ENSMUSG00000052928	missense	K/E	458	Ctif	ENSMUST00000165559.2:c.1372A>G	ENSMUSP00000129974.1:p.Lys458Glu	H-2-Kb	9	3	9	RSFAFTAAE	RSFAFTAAK	SMM	476.552	1897.186	3.981	63	0.302	497.378	1583.55	3.184	1412.21	511.42	1327.6	1067	1897.186388	476.5516746	1754.890407	483.3369531	M8	0.971428571	1.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.319	63	9	2	0.222222222	18qE3	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr18	44847844	44847844	A	G	ENSMUST00000037763.10	1	ENSMUSG00000034653	missense	Q/R	502	Ythdc2	ENSMUST00000037763.10:c.1505A>G	ENSMUSP00000048340.7:p.Gln502Arg	H-2-Kb	9	7	5	DAFARVFHL	DAFAQVFHL	NetMHCpan	355	1026.1	2.89	136	0.272	436.068	1456.594	3.34	1952.22	609.77	1026.1	355	1233.417199	408.4228203	1679.770694	463.713778	M8	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.294	136	22	1	0.045454545	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr19	5982837	5982837	A	C	ENSMUST00000041827.7	1	ENSMUSG00000037451	missense	S/A	267	Slc22a20	ENSMUST00000041827.7:c.799T>G	ENSMUSP00000049473.7:p.Ser267Ala	H-2-Kb	9	6	6	VFFLYAWWL	VFFLYSWWL	SMM	111.715	68.251	0.611	59	0.119	477.142	326.92	0.685	561.53	819.31	1138.8	1653.8	68.25115418	111.7146168	92.31026548	134.9739632	M8	1.3	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.143	59	0	0	NA	19qA	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	sgMsh2	cell line
chr19	13633635	13633635	CT	C	ENSMUST00000217182.2	5	ENSMUSG00000045678	FS	F/X	175	Olfr1489	ENSMUST00000217182.2:c.529del	ENSMUSP00000149711.1:p.Cys177ValfsTer16	H-2-Kb	9	16	0	PHYWLFLAL	NA	SMM	166.001	NA	NA	375	0.328	366.318	NA	NA	NA	971.99	NA	541.1	NA	166.0007308	NA	191.5358177	M8	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.331	375	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr19	6171394	6171394	T	C	ENSMUST00000045042.7	1	ENSMUSG00000039699	missense	L/P	78	Batf2	ENSMUST00000045042.7:c.233T>C	ENSMUSP00000045744.7:p.Leu78Pro	H-2-Kb	9	5	7	AGWGRTPHL	AGWGRTLHL	NetMHCpan	309.4	307.7	0.995	90	0.189	429.93	509.685	1.186	870.88	1085.26	307.7	309.4	579.5754752	482.0698829	439.7947088	377.7896015	M8	-1.071428571	-0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.195	90	0	0	NA	19qA	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.933231086	sgMsh2	cell line
chr2	24953277	24953277	T	C	ENSMUST00000028350.8	1	ENSMUSG00000026974	missense	V/A	87	Zmynd19	ENSMUST00000028350.8:c.260T>C	ENSMUSP00000028350.3:p.Val87Ala	H-2-Db	9	10	2	VAHLNAVTV	VVHLNAVTV	NetMHC	8.32	172.04	20.678	99	0.182	28.28	261.657	9.252	172.04	8.32	293.9	20.7	229.4140437	35.86080216	327.0167515	51.23538453	M8	0.942857143	1.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.198	99	154	38	0.246753247	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.947588487	sgMsh2	cell line
chr2	86356297	86356297	CA	C	ENSMUST00000216547.1	5	ENSMUSG00000075188	FS	F/X	28	Olfr1056	ENSMUST00000216547.1:c.84del	ENSMUSP00000149545.1:p.Phe28LeufsTer18	H-2-Db	9	13	0	YSFSSMLPL	NA	NetMHCpan	55.5	NA	NA	240	0.15	126.765	NA	NA	NA	60.08	NA	55.5	NA	209.7104152	NA	193.4505639	M8	1.3	1.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.149	240	0	0	NA	2qD	chr2-82235500-94430128	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.713084265	sgMsh2	cell line
chr2	35085337	35085337	AT	A	ENSMUST00000045776.4	1	ENSMUSG00000035875	FS	K/X	283	AI182371	ENSMUST00000045776.4:c.849del	ENSMUSP00000037754.5:p.Lys283AsnfsTer22	H-2-Db	9	7	5	PMIKNAVTM	NA	SMM	86.222	NA	NA	178	0.236	120.809	NA	NA	NA	111.43	NA	338.5	NA	86.2223787	NA	130.1877136	M8	0.614285714	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.249	178	0	0	NA	2qB	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr2	88006632	88006632	T	G	ENSMUST00000099839.3	NA	ENSMUSG00000075141	missense	M/L	49	Olfr1160	ENSMUST00000099839.3:c.145A>C	ENSMUSP00000097427.3:p.Met49Leu	H-2-Db	9	3	9	FSIYSITLL	FSIYSITLM	NetMHC	196.44	127.02	0.647	571	0.152	334.623	267.366	0.799	127.02	196.44	241.9	253.7	292.8329887	415.5468552	336.9535219	439.1066356	M8	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.153	571	0	0	NA	2qD	chr2-82235500-94430128	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.732227467	sgMsh2	cell line
chr2	88006632	88006632	T	G	ENSMUST00000099839.3	NA	ENSMUSG00000075141	missense	M/L	49	Olfr1160	ENSMUST00000099839.3:c.145A>C	ENSMUSP00000097427.3:p.Met49Leu	H-2-Db	9	6	6	YSITLLGNI	YSITLMGNI	NetMHC	256.69	185.65	0.723	571	0.152	487.354	413.213	0.848	185.65	256.69	1299.1	1238	453.5445995	515.9647117	372.8807814	458.7435806	M8	1.714285714	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.153	571	0	0	NA	2qD	chr2-82235500-94430128	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.732227467	sgMsh2	cell line
chr2	31207697	31207697	A	G	ENSMUST00000056433.6	1	ENSMUSG00000000194	missense	K/R	441	Gpr107	ENSMUST00000056433.6:c.1322A>G	ENSMUSP00000056739.5:p.Lys441Arg	H-2-Db	9	4	8	KAAINLARL	KAAINLAKL	NetMHCpan	101.4	102.4	1.01	186	0.22	325.555	235.751	0.724	167.68	392.01	102.4	101.4	303.8225469	298.2771604	364.3929785	352.8336521	M8	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.229	186	113	27	0.238938053	2qB	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr2	24687761	24687761	A	G	ENSMUST00000041342.11	1	ENSMUSG00000004113	missense	L/P	700	Cacna1b	ENSMUST00000041342.11:c.2099T>C	ENSMUSP00000037416.5:p.Leu700Pro	H-2-Db	9	4	8	TLFGNYTPL	TLFGNYTLL	NetMHCpan	113.2	549.8	4.857	106	0.17	218.505	712.435	3.26	2806.17	647.6	549.8	113.2	840.6592577	260.9876759	584.2113633	176.0232357	M8	-0.128571429	-1.27E-16	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.182	106	0	0	NA	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.87101568	sgMsh2	cell line
chr2	22577871	22577871	T	C	ENSMUST00000044749.13	5	ENSMUSG00000025716	missense	V/A	1317	Myo3a	ENSMUST00000044749.13:c.3950T>C	ENSMUSP00000046329.7:p.Val1317Ala	H-2-Db	9	10	2	SAVTQNAPL	SVVTQNAPL	SMMPMBEC	357.742	2283.337	6.383	175	0.183	496.921	3714.743	7.476	9108.98	745.43	4105.8	474.3	3323.686094	519.5412082	2283.336925	357.7420571	M8	0.071428571	0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.182	175	0	0	NA	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.87101568	sgMsh2	cell line
chr2	30828146	30828146	T	C	ENSMUST00000041726.3	1	ENSMUSG00000039483	missense	Y/C	14	Asb6	ENSMUST00000041726.3:c.41A>G	ENSMUSP00000043462.3:p.Tyr14Cys	H-2-Kb	8	7	5	IIFECQPL	IIFEYQPL	NetMHC	11.78	2.21	0.188	22	0.182	22.724	2.306	0.101	2.21	11.78	4.4	28.6	1.96218522	21.96544469	2.402923806	23.48226582	M8	0.714285714	0.814285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.217	22	25	6	0.24	2qB	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr2	22623815	22623815	A	T	ENSMUST00000028123.3	1	ENSMUSG00000026787	missense	N/I	88	Gad2	ENSMUST00000028123.3:c.263A>T	ENSMUSP00000028123.3:p.Asn88Ile	H-2-Kb	8	10	2	VIYAFLHA	VNYAFLHA	NetMHC	12.56	11.57	0.921	61	0.262	28.2	24.188	0.858	11.57	12.56	16.7	33.2	31.67670499	28.42758718	33.47649647	27.97306149	M8	1.457142857	1.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.277	61	0	0	NA	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr2	88006632	88006632	T	G	ENSMUST00000099839.3	NA	ENSMUSG00000075141	missense	M/L	49	Olfr1160	ENSMUST00000099839.3:c.145A>C	ENSMUSP00000097427.3:p.Met49Leu	H-2-Kb	8	4	8	SIYSITLL	SIYSITLM	NetMHC	23.89	82.42	3.45	571	0.152	68.167	260.849	3.827	82.42	23.89	64.5	24.2	480.5515695	119.8781411	439.2785529	112.1346934	M8	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.153	571	0	0	NA	2qD	chr2-82235500-94430128	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.732227467	sgMsh2	cell line
chr2	86356297	86356297	CA	C	ENSMUST00000216547.1	5	ENSMUSG00000075188	FS	F/X	28	Olfr1056	ENSMUST00000216547.1:c.84del	ENSMUSP00000149545.1:p.Phe28LeufsTer18	H-2-Kb	8	11	1	LYYSFSSM	NA	NetMHC	25.36	NA	NA	240	0.15	67.203	NA	NA	NA	25.36	NA	28.3	NA	122.6704617	NA	106.106014	M8	-0.042857143	0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.149	240	0	0	NA	2qD	chr2-82235500-94430128	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.713084265	sgMsh2	cell line
chr2	31207697	31207697	A	G	ENSMUST00000056433.6	1	ENSMUSG00000000194	missense	K/R	441	Gpr107	ENSMUST00000056433.6:c.1322A>G	ENSMUSP00000056739.5:p.Lys441Arg	H-2-Kb	8	5	7	AAINLARL	AAINLAKL	NetMHC	45.63	189.95	4.163	186	0.22	104.51	266.237	2.547	189.95	45.63	211.3	91.6	351.3500341	122.9532464	321.1737185	117.4194387	M8	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.229	186	113	27	0.238938053	2qB	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr2	85786374	85786374	T	C	ENSMUST00000215945.1	5	ENSMUSG00000033850	missense	F/L	288	Olfr1015	ENSMUST00000215945.1:c.862T>C	ENSMUSP00000148957.1:p.Phe288Leu	H-2-Kb	8	4	8	INPLLNPL	INPLLNPF	NetMHC	54.38	1179.23	21.685	383	0.201	137.353	1709.61	12.447	1179.23	54.38	1406.7	150.9	2012.51905	123.8055176	2012.51905	160.228586	M8	0.171428571	0.271428571	FALSE	FALSE	FALSE	0	FALSE	2	Mutect2;Strelka2;MuSe;Vardict	4	0.207	383	0	0	NA	2qD	chr2-82235500-94430128	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.990660691	sgMsh2	cell line
chr2	31207697	31207697	A	G	ENSMUST00000056433.6	1	ENSMUSG00000000194	missense	K/R	441	Gpr107	ENSMUST00000056433.6:c.1322A>G	ENSMUSP00000056739.5:p.Lys441Arg	H-2-Kb	8	7	5	INLARLRL	INLAKLRL	NetMHCpan	74.3	156.3	2.104	186	0.22	185.389	321.112	1.732	315.08	157.11	156.3	74.3	327.1447838	213.6682534	353.7854762	227.3735801	M8	0.1	0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.229	186	113	27	0.238938053	2qB	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr2	76633559	76633559	C	G	ENSMUST00000002808.6	1	ENSMUSG00000002731	missense	G/A	253	Prkra	ENSMUST00000002808.6:c.758G>C	ENSMUSP00000002808.6:p.Gly253Ala	H-2-Kb	8	10	2	QAFNITYL	QGFNITYL	NetMHC	165.08	354.06	2.145	133	0.278	336.593	461.286	1.37	354.06	165.08	338	183.7	568.5124764	489.4856902	598.0534499	544.1767718	M8	1.057142857	1.057142857	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.271	133	133	37	0.278195489	2qC3	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr2	24687761	24687761	A	G	ENSMUST00000041342.11	1	ENSMUSG00000004113	missense	L/P	700	Cacna1b	ENSMUST00000041342.11:c.2099T>C	ENSMUSP00000037416.5:p.Leu700Pro	H-2-Kb	8	5	7	LFGNYTPL	LFGNYTLL	SMMPMBEC	165.097	454.716	2.754	106	0.17	222.376	562.888	2.531	663.17	251.67	614.4	324.9	511.3755976	193.0812048	454.715753	165.0973111	M8	-0.128571429	-0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.182	106	0	0	NA	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.87101568	sgMsh2	cell line
chr2	66689647	66689647	G	A	ENSMUST00000042792.6	1	ENSMUSG00000034810	missense	A/V	971	Scn7a	ENSMUST00000042792.6:c.2912C>T	ENSMUSP00000042405.6:p.Ala971Val	H-2-Kb	8	11	1	VDMIFAYI	ADMIFAYI	NetMHCpan	118	520.5	4.411	87	0.195	143.967	576.267	4.003	2100.7	342.17	520.5	118	632.0333573	167.7799266	411.8508816	120.1544888	M8	1.528571429	1.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.195	87	0	0	NA	2qC1.3	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.933231086	sgMsh2	cell line
chr2	37405335	37405335	A	C	ENSMUST00000100143.9	5	ENSMUSG00000075376	missense	V/G	223	Rc3h2	ENSMUST00000100143.9:c.668T>G	ENSMUSP00000097721.3:p.Val223Gly	H-2-Kb	8	8	4	VLFGVQRL	VLFVVQRL	NetMHCpan	165.8	52.4	0.316	185	0.259	207.26	71.12	0.343	63.22	364.58	52.4	165.8	79.02054124	199.8664966	79.93555598	214.6545013	M8	0.885714286	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.239	185	73	17	0.232876712	2qB	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr2	32237505	32237505	C	T	ENSMUST00000036473.15	1	ENSMUSG00000039254	missense	A/V	61	Pomt1	ENSMUST00000036473.15:c.182C>T	ENSMUSP00000038722.9:p.Ala61Val	H-2-Kb	8	4	8	WQLSYPRV	WQLSYPRA	SMMPMBEC	349.736	1681.667	4.808	92	0.228	488.703	4398.254	9	6517.53	595.69	7854.8	1496.1	2278.977303	381.7156799	1681.666993	349.7357273	M8	-0.528571429	-0.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.215	92	43	10	0.23255814	2qB	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr2	86356297	86356297	CA	C	ENSMUST00000216547.1	5	ENSMUSG00000075188	FS	F/X	28	Olfr1056	ENSMUST00000216547.1:c.84del	ENSMUSP00000149545.1:p.Phe28LeufsTer18	H-2-Kb	8	8	4	APFLYYSF	APFFVLFF	SMMPMBEC	321.174	6835.023	21.281	240	0.15	460.694	6780.381	14.718	10301.19	662.66	5203.2	542.3	6725.738845	379.0879676	6835.02331	321.1737185	M8	0.628571429	0.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.149	240	0	0	NA	2qD	chr2-82235500-94430128	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.713084265	sgMsh2	cell line
chr2	86356297	86356297	CA	C	ENSMUST00000216547.1	5	ENSMUSG00000075188	FS	F/X	28	Olfr1056	ENSMUST00000216547.1:c.84del	ENSMUSP00000149545.1:p.Phe28LeufsTer18	H-2-Kb	9	11	1	LYYSFSSML	NA	NetMHC	26.67	NA	NA	240	0.15	32.753	NA	NA	NA	26.67	NA	31.3	NA	34.20660715	NA	62.40939895	M8	0.685714286	0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.149	240	0	0	NA	2qD	chr2-82235500-94430128	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.713084265	sgMsh2	cell line
chr2	24687761	24687761	A	G	ENSMUST00000041342.11	1	ENSMUSG00000004113	missense	L/P	700	Cacna1b	ENSMUST00000041342.11:c.2099T>C	ENSMUSP00000037416.5:p.Leu700Pro	H-2-Kb	9	4	8	TLFGNYTPL	TLFGNYTLL	NetMHCpan	51	85.6	1.678	106	0.17	88.814	134.728	1.517	105.68	60.07	85.6	51	193.2457716	151.7434661	163.775902	117.5574075	M8	-0.128571429	-1.27E-16	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.182	106	0	0	NA	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.87101568	sgMsh2	cell line
chr2	86356297	86356297	CA	C	ENSMUST00000216547.1	5	ENSMUSG00000075188	FS	F/X	28	Olfr1056	ENSMUST00000216547.1:c.84del	ENSMUSP00000149545.1:p.Phe28LeufsTer18	H-2-Kb	9	13	0	YSFSSMLPL	NA	NetMHCpan	49.6	NA	NA	240	0.15	116.235	NA	NA	NA	73.94	NA	49.6	NA	158.5294672	NA	190.6557905	M8	1.3	1.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.149	240	0	0	NA	2qD	chr2-82235500-94430128	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.713084265	sgMsh2	cell line
chr2	22623815	22623815	A	T	ENSMUST00000028123.3	1	ENSMUSG00000026787	missense	N/I	88	Gad2	ENSMUST00000028123.3:c.263A>T	ENSMUSP00000028123.3:p.Asn88Ile	H-2-Kb	9	10	2	VIYAFLHAT	VNYAFLHAT	NetMHC	86.92	51.19	0.589	61	0.262	108.038	73.799	0.683	51.19	86.92	34.1	88.4	96.40731774	127.6762152	113.8282345	151.7923903	M8	0.714285714	1.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.277	61	0	0	NA	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr2	76894297	76894297	T	C	ENSMUST00000111846.8	5	ENSMUSG00000051747	missense	E/G	5457	Ttn	ENSMUST00000111846.8:c.16370A>G	ENSMUSP00000107477.2:p.Glu5457Gly	H-2-Kb	9	4	8	VWYRNEHGL	VWYRNEHEL	SMM	56.378	64.731	1.148	224	0.25	101.218	135.661	1.34	151.58	94.48	302.1	252	64.73065476	56.37804345	119.7429629	107.9567993	M8	-1.8	-1.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.247	224	0	0	NA	2qC3	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr2	86356297	86356297	CA	C	ENSMUST00000216547.1	5	ENSMUSG00000075188	FS	F/X	28	Olfr1056	ENSMUST00000216547.1:c.84del	ENSMUSP00000149545.1:p.Phe28LeufsTer18	H-2-Kb	9	10	2	FLYYSFSSM	NA	NetMHCpan	67.4	NA	NA	240	0.15	175.671	NA	NA	NA	113.05	NA	67.4	NA	238.292295	NA	271.1752193	M8	-0.042857143	0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.149	240	0	0	NA	2qD	chr2-82235500-94430128	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.713084265	sgMsh2	cell line
chr2	68118819	68118819	A	G	ENSMUST00000112346.2	NA	ENSMUSG00000034780	missense	S/G	293	B3galt1	ENSMUST00000112346.2:c.877A>G	ENSMUSP00000107965.2:p.Ser293Gly	H-2-Kb	9	10	2	YGLCRYRRV	YSLCRYRRV	NetMHC	124.84	39.29	0.315	302	0.268	342.339	134.347	0.392	39.29	124.84	116.2	280.8	165.6189397	475.4556362	152.4930322	403.8778168	M8	-0.614285714	-0.614285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.272	302	0	0	NA	2qC1.3	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr2	86160001	86160001	T	C	ENSMUST00000215624.1	NA	ENSMUSG00000075202	missense	Y/C	123	Olfr1042	ENSMUST00000215624.1:c.368A>G	ENSMUSP00000151053.1:p.Tyr123Cys	H-2-Kb	9	6	6	MAYDRCVAI	MAYDRYVAI	NetMHCpan	132.7	14.4	0.109	568	0.123	145.305	30.259	0.208	27.08	145.65	14.4	132.7	39.27443988	184.1238299	33.43874735	144.9606074	M8	0.528571429	0.528571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.126	568	0	0	NA	2qD	chr2-82235500-94430128	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.603010855	sgMsh2	cell line
chr2	30828146	30828146	T	C	ENSMUST00000041726.3	1	ENSMUSG00000039483	missense	Y/C	14	Asb6	ENSMUST00000041726.3:c.41A>G	ENSMUSP00000043462.3:p.Tyr14Cys	H-2-Kb	9	7	5	IIFECQPLV	IIFEYQPLV	NetMHC	218.58	32.33	0.148	22	0.182	345.586	73.14	0.212	32.33	218.58	47.4	587.5	98.88035114	331.2150024	111.7506351	359.9564831	M8	0.671428571	0.814285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.217	22	25	6	0.24	2qB	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr2	31207697	31207697	A	G	ENSMUST00000056433.6	1	ENSMUSG00000000194	missense	K/R	441	Gpr107	ENSMUST00000056433.6:c.1322A>G	ENSMUSP00000056739.5:p.Lys441Arg	H-2-Kb	9	7	5	INLARLRLF	INLAKLRLF	SMM	221.366	331.215	1.496	186	0.22	236.336	355.812	1.506	295.92	230.43	501.3	275	331.2150024	221.3655323	380.4083139	242.2423104	M8	1	1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.229	186	113	27	0.238938053	2qB	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr2	85721983	85721983	C	T	ENSMUST00000216443.2	5	ENSMUSG00000043226	missense	R/W	193	Olfr1009	ENSMUST00000216443.2:c.577C>T	ENSMUSP00000150450.1:p.Arg193Trp	H-2-Kb	9	10	2	IWINKLLVF	IRINKLLVF	SMM	261.885	1588.949	6.067	358	0.19	294.855	1805.75	6.124	2022.55	301.14	5543.4	1677.4	1588.949154	261.8846237	1259.650316	288.5692163	M8	1.671428571	1.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.191	358	0	0	NA	2qD	chr2-82235500-94430128	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.914087884	sgMsh2	cell line
chr2	32237505	32237505	C	T	ENSMUST00000036473.15	1	ENSMUSG00000039254	missense	A/V	61	Pomt1	ENSMUST00000036473.15:c.182C>T	ENSMUSP00000038722.9:p.Ala61Val	H-2-Kb	9	6	6	LSYPRVVVF	LSYPRAVVF	NetMHCpan	129	123.9	0.96	92	0.228	209.79	244.459	1.165	526.22	450.53	123.9	129	264.9171047	246.0990856	224.0010221	173.4802343	M8	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.215	92	43	10	0.23255814	2qB	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr2	29872892	29872892	A	G	ENSMUST00000047521.6	1	ENSMUSG00000039787	missense	T/A	213	Cercam	ENSMUST00000047521.6:c.637A>G	ENSMUSP00000041622.6:p.Thr213Ala	H-2-Kb	9	8	4	VHSAFLLSL	VHSTFLLSL	NetMHCpan	148.8	139.3	0.936	79	0.215	484.486	399.176	0.824	362.59	479.07	139.3	148.8	437.6329367	489.9028884	435.7626466	519.0987702	M8	2.057142857	2.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.237	79	4	1	0.25	2qB	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr2	85786374	85786374	T	C	ENSMUST00000215945.1	5	ENSMUSG00000033850	missense	F/L	288	Olfr1015	ENSMUST00000215945.1:c.862T>C	ENSMUSP00000148957.1:p.Phe288Leu	H-2-Kb	9	3	9	IINPLLNPL	IINPLLNPF	NetMHCpan	438.7	1653.4	3.769	383	0.201	476.268	1172.73	2.462	1420.23	481.44	1653.4	438.7	794.5294511	471.0966327	925.2306262	534.872168	M8	0.171428571	1.142857143	FALSE	FALSE	FALSE	0	FALSE	2	Mutect2;Strelka2;MuSe;Vardict	4	0.207	383	0	0	NA	2qD	chr2-82235500-94430128	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.990660691	sgMsh2	cell line
chr2	87656102	87656102	A	AT	ENSMUST00000135875.3	5	ENSMUSG00000111747	FS	M/NX	273	Olfr1134	ENSMUST00000135875.3:c.817dup	ENSMUSP00000150837.1:p.Met273AsnfsTer23	H-2-Kb	9	20	0	DSYVKPTYL	NA	SMM	254.748	NA	NA	518	0.135	435.96	NA	NA	NA	486.22	NA	545.4	NA	254.7475407	NA	385.7003207	M8	-0.114285714	-0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.137	518	0	0	NA	2qD	chr2-82235500-94430128	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.65565466	sgMsh2	cell line
chr2	158768178	158768178	C	T	ENSMUST00000029183.2	1	ENSMUSG00000027654	missense	P/L	22	Fam83d	ENSMUST00000029183.2:c.65C>T	ENSMUSP00000029183.2:p.Pro22Leu	H-2-Db	9	8	4	CGPLNPTEL	CGPPNPTEL	NetMHC	65.56	425.32	6.487	48	0.229	216.905	644.766	2.973	425.32	65.56	306.4	93.7	864.2114181	340.1104688	1154.968129	410.7428385	M8	-0.471428571	-0.214285714	TRUE	FALSE	FALSE	1	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.255	48	0	0	NA	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr2	155834529	155834529	G	A	ENSMUST00000029143.5	1	ENSMUSG00000074647	missense	A/V	107	Fam83c	ENSMUST00000029143.5:c.320C>T	ENSMUSP00000029143.5:p.Ala107Val	H-2-Db	9	9	3	LSVLDVDYM	LSALDVDYM	NetMHC	171.24	976.8	5.704	142	0.204	387.244	1079.403	2.787	976.8	171.24	898	316.8	1182.006868	472.737441	1326.08084	457.6884996	M8	0.828571429	1.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.218	142	0	0	NA	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr2	180583499	180583499	A	G	ENSMUST00000029085.8	1	ENSMUSG00000027569	missense	T/A	83	Mrgbp	ENSMUST00000029085.8:c.247A>G	ENSMUSP00000029085.8:p.Thr83Ala	H-2-Db	9	10	2	SAMYDMQAL	STMYDMQAL	NetMHCpan	338.9	3104.4	9.16	110	0.245	412.293	3121.081	7.57	4556.07	341.95	3104.4	338.9	3137.762006	482.636319	2975.568825	520.6789256	M8	0.157142857	0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.24	110	88	28	0.318181818	2qH4	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr2	121336461	121336461	T	G	ENSMUST00000052029.9	1	ENSMUSG00000033526	missense	S/R	870	Ppip5k1	ENSMUST00000052029.9:c.2608A>C	ENSMUSP00000057632.3:p.Ser870Arg	H-2-Db	9	11	1	RAISELNYM	SAISELNYM	NetMHCpan	138.7	63.8	0.46	153	0.242	375.561	214.339	0.571	146.47	381.66	63.8	138.7	340.1104688	520.7388744	282.2084413	369.4621898	M8	0.157142857	0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.22	153	21	7	0.333333333	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr2	131274254	131274254	T	C	ENSMUST00000183349.1	3	ENSMUSG00000037514	missense	I/T	24	Pank2	ENSMUST00000183349.1:c.70T>C	ENSMUSP00000139203.1:p.Ile24Thr	H-2-Kb	8	8	4	LSRTFSHL	LSRIFSHL	NetMHC	6.68	6.6	0.988	69	0.377	22.689	20.587	0.907	6.6	6.68	16.3	22.9	26.10597994	24.5323979	24.87367755	22.47708563	M8	-0.485714286	-0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.358	69	86	11	0.127906977	2qF1	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr2	180714861	180714861	A	G	ENSMUST00000078687.5	1	ENSMUSG00000027573	missense	N/S	97	Gid8	ENSMUST00000078687.5:c.290A>G	ENSMUSP00000077753.5:p.Asn97Ser	H-2-Kb	8	11	1	SRYLYFHL	NRYLYFHL	NetMHC	8.14	142.06	17.452	141	0.22	15.146	118.423	7.819	142.06	8.14	235.5	34.2	94.78508415	14.91900983	87.24489012	15.37234066	M8	0.014285714	0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.233	141	82	18	0.219512195	2qH4	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr2	88412518	88412518	T	C	ENSMUST00000217320.2	5	ENSMUSG00000081836	missense	T/A	47	Olfr1180	ENSMUST00000217320.2:c.139A>G	ENSMUSP00000150965.1:p.Thr47Ala	H-2-Kb	8	6	6	VSITCAQL	VSITCTQL	NetMHC	10.96	40.72	3.715	257	0.171	22.798	65.742	2.884	40.72	10.96	85.9	36	73.57664827	25.74779247	57.90819124	19.84906254	M8	1.085714286	1.142857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.179	257	0	0	NA	2qD	chr2-82235500-94430128	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.856658279	sgMsh2	cell line
chr2	180583499	180583499	A	G	ENSMUST00000029085.8	1	ENSMUSG00000027569	missense	T/A	83	Mrgbp	ENSMUST00000029085.8:c.247A>G	ENSMUSP00000029085.8:p.Thr83Ala	H-2-Kb	8	11	1	AMYDMQAL	TMYDMQAL	NetMHCpan	73.9	56.7	0.767	110	0.245	127.758	106.842	0.836	70.22	74.49	56.7	73.9	143.4630303	181.0256018	185.6692572	236.4503711	M8	0.157142857	0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.24	110	88	28	0.318181818	2qH4	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr2	132240580	132240580	A	G	ENSMUST00000110164.7	2	ENSMUSG00000027341	missense	F/S	90	Tmem230	ENSMUST00000110164.7:c.269T>C	ENSMUSP00000105793.1:p.Phe90Ser	H-2-Kb	8	11	1	SLPGFYHL	FLPGFYHL	NetMHCpan	98.2	522.1	5.317	180	0.25	164.475	459.527	2.794	694.44	114.79	522.1	98.2	387.9180607	214.1608096	396.9538331	229.4774419	M8	0.557142857	0.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.264	180	49	8	0.163265306	2qF2	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr3	28794409	28794409	G	A	ENSMUST00000060500.8	1	ENSMUSG00000050192	missense	C/Y	139	Eif5a2	ENSMUST00000060500.8:c.416G>A	ENSMUSP00000050289.7:p.Cys139Tyr	H-2-Kb	8	7	5	VSVMYAMS	VSVMCAMS	SMM	72.734	814.217	11.194	274	0.288	100.979	2855.808	28.281	5114.17	120.91	4897.4	389.8	814.2166892	72.73442335	792.027024	81.04757034	M8	0.985714286	1.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.283	274	18	10	0.555555556	3qA3	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr2	152004194	152004194	T	C	ENSMUST00000073228.11	1	ENSMUSG00000027463	missense	V/A	25	Slc52a3	ENSMUST00000073228.11:c.74T>C	ENSMUSP00000072961.5:p.Val25Ala	H-2-Kb	8	6	6	INGLWAEL	INGLWVEL	SMMPMBEC	144.125	415.662	2.884	65	0.415	176.594	546.352	3.094	646.97	156.97	525.5	212.8	567.204934	196.218522	415.6616909	144.1252256	M8	0.157142857	0.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.407	65	0	0	NA	2qG3	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr2	119139420	119139420	GT	G	ENSMUST00000094695.11	1	ENSMUSG00000070730	FS	T/X	387	Rmdn3	ENSMUST00000094695.11:c.1159del	ENSMUSP00000092283.5:p.Thr387ArgfsTer46	H-2-Kb	8	37	0	YSQDFQKL	NA	SMM	227.898	NA	NA	163	0.258	263.57	NA	NA	NA	233.55	NA	302.9	NA	227.8977303	NA	293.5891489	M8	-1.228571429	-1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.268	163	40	2	0.05	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr2	158495606	158495606	C	A	ENSMUST00000109485.8	1	ENSMUSG00000027652	missense	L/I	1496	Ralgapb	ENSMUST00000109485.8:c.4486C>A	ENSMUSP00000105111.2:p.Leu1496Ile	H-2-Kb	8	10	2	AIFQEVGL	ALFQEVGL	SMMPMBEC	137.006	468.533	3.42	169	0.296	277.086	992.844	3.583	2896.55	412.65	1197.3	363.3	788.3879904	190.8710225	468.5328006	137.0061303	M8	1.128571429	1.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.292	169	105	27	0.257142857	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr2	90296129	90296129	A	G	ENSMUST00000214356.2	3	ENSMUSG00000080809	missense	V/A	244	Olfr1273-ps	ENSMUST00000214356.2:c.731T>C	ENSMUSP00000150797.1:p.Val244Ala	H-2-Kb	8	10	2	VAILFFGP	VVILFFGP	SMM	225.289	228.95	1.016	605	0.218	379.677	484.135	1.275	739.32	511.76	1159.7	523.3	228.9496585	225.2890066	228.9496585	247.5939338	M8	1.957142857	2.785714286	FALSE	FALSE	TRUE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	605	0	0	NA	2qE1	chr2-82235500-94430128	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr2	92380460	92380460	T	C	ENSMUST00000028650.8	1	ENSMUSG00000027222	missense	V/A	313	Pex16	ENSMUST00000028650.8:c.938T>C	ENSMUSP00000028650.8:p.Val313Ala	H-2-Kb	8	11	1	AGLVARPL	VGLVARPL	SMMPMBEC	414.706	120.987	0.292	247	0.101	476.22	115.919	0.243	65.37	534.86	207.8	921.1	110.8510982	417.5802981	120.9873599	414.7056956	M8	1.014285714	1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.103	247	28	9	0.321428571	2qE1	chr2-82235500-94430128	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.492937445	sgMsh2	cell line
chr2	90296129	90296129	A	G	ENSMUST00000214356.2	3	ENSMUSG00000080809	missense	V/A	244	Olfr1273-ps	ENSMUST00000214356.2:c.731T>C	ENSMUSP00000150797.1:p.Val244Ala	H-2-Kb	8	11	1	AILFFGPA	VILFFGPA	SMMPMBEC	255.705	74.6	0.292	605	0.218	409.107	103.202	0.252	125.17	696.41	173	512.2	81.23440428	306.013087	74.60020141	255.7054591	M8	1.957142857	1.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	605	0	0	NA	2qE1	chr2-82235500-94430128	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr2	132240580	132240580	A	G	ENSMUST00000110164.7	2	ENSMUSG00000027341	missense	F/S	90	Tmem230	ENSMUST00000110164.7:c.269T>C	ENSMUSP00000105793.1:p.Phe90Ser	H-2-Kb	9	10	2	VSLPGFYHL	VFLPGFYHL	NetMHC	22.77	187.13	8.218	180	0.25	93.901	246.108	2.621	187.13	22.77	200.4	30	291.8166046	157.8010905	341.3893746	169.9221522	M8	0.557142857	0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.264	180	49	8	0.163265306	2qF2	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr2	90296129	90296129	A	G	ENSMUST00000214356.2	3	ENSMUSG00000080809	missense	V/A	244	Olfr1273-ps	ENSMUST00000214356.2:c.731T>C	ENSMUSP00000150797.1:p.Val244Ala	H-2-Kb	9	10	2	VAILFFGPA	VVILFFGPA	NetMHC	27.49	37.64	1.369	605	0.218	72.942	107.929	1.48	37.64	27.49	98.3	44.2	120.2568988	106.9325688	117.5574075	101.6833861	M8	1.957142857	2.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	605	0	0	NA	2qE1	chr2-82235500-94430128	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr2	180714861	180714861	A	G	ENSMUST00000078687.5	1	ENSMUSG00000027573	missense	N/S	97	Gid8	ENSMUST00000078687.5:c.290A>G	ENSMUSP00000077753.5:p.Asn97Ser	H-2-Kb	9	10	2	TSRYLYFHL	TNRYLYFHL	NetMHC	31.73	61.26	1.931	141	0.22	64.842	81.222	1.253	61.26	31.73	45.4	34.6	101.1835704	95.08455975	115.9444594	104.2917608	M8	0.014285714	0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.233	141	82	18	0.219512195	2qH4	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr2	88391594	88391594	A	C	ENSMUST00000214040.2	5	ENSMUSG00000056995	missense	M/L	116	Olfr1178	ENSMUST00000214040.2:c.346A>C	ENSMUSP00000150036.1:p.Met116Leu	H-2-Kb	9	11	1	LAYDRYVAI	MAYDRYVAI	NetMHCpan	22.6	14.4	0.637	459	0.142	36.184	30.259	0.836	27.08	38.93	14.4	22.6	39.27443988	44.06664633	33.43874735	33.43874735	M8	-0.014285714	-0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.142	459	0	0	NA	2qD	chr2-82235500-94430128	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.679583662	sgMsh2	cell line
chr2	172454295	172454295	T	C	ENSMUST00000099060.1	1	ENSMUSG00000074569	missense	H/R	203	Gcnt7	ENSMUST00000099060.1:c.608A>G	ENSMUSP00000096659.1:p.His203Arg	H-2-Kb	9	8	4	FQWRYVMNL	FQWHYVMNL	NetMHC	44.73	91.86	2.054	180	0.244	378.766	352.119	0.93	91.86	44.73	121.8	74.8	680.9418088	764.0292757	582.4383998	682.7315929	M8	-0.042857143	-0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.252	180	0	0	NA	2qH3	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr2	180583499	180583499	A	G	ENSMUST00000029085.8	1	ENSMUSG00000027569	missense	T/A	83	Mrgbp	ENSMUST00000029085.8:c.247A>G	ENSMUSP00000029085.8:p.Thr83Ala	H-2-Kb	9	4	8	VIWDHLSAM	VIWDHLSTM	NetMHCpan	73.8	57.5	0.779	110	0.245	77.793	86.56	1.113	88.57	75.95	57.5	73.8	84.54929682	79.63610307	91.88613834	85.35913393	M8	-0.128571429	0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.24	110	88	28	0.318181818	2qH4	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr2	111335694	111335694	C	A	ENSMUST00000099618.1	NA	ENSMUSG00000096554	missense	R/M	128	Olfr1282	ENSMUST00000099618.1:c.383G>T	ENSMUSP00000097213.1:p.Arg128Met	H-2-Kb	9	10	2	CMPLHYSSI	CRPLHYSSI	NetMHC	94.4	1410.95	14.947	814	0.262	136.949	1266.807	9.25	1410.95	94.4	2800.2	169.4	724.6194716	104.4984864	1122.664526	174.2809827	M8	0.085714286	0.185714286	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.259	814	0	0	NA	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr2	119139420	119139420	GT	G	ENSMUST00000094695.11	1	ENSMUSG00000070730	FS	T/X	387	Rmdn3	ENSMUST00000094695.11:c.1159del	ENSMUSP00000092283.5:p.Thr387ArgfsTer46	H-2-Kb	9	45	0	DGYIFLSAI	NA	NetMHC	187.49	NA	NA	163	0.258	309.473	NA	NA	NA	187.49	NA	212.4	NA	406.5462879	NA	510.7989549	M8	2.185714286	2.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.268	163	40	2	0.05	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr2	153144474	153144474	G	T	ENSMUST00000003370.13	1	ENSMUSG00000003283	missense	R/M	381	Hck	ENSMUST00000003370.13:c.1142G>T	ENSMUSP00000003370.7:p.Arg381Met	H-2-Kb	9	3	9	RNYIHRDLM	RNYIHRDLR	NetMHCpan	132.5	10091.4	76.162	215	0.237	223.435	6209.322	27.79	9195.72	223.97	10091.4	132.5	2506.744092	222.8999649	3222.923521	238.9186213	M8	-0.328571429	-0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.247	215	2	1	0.5	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr2	88412518	88412518	T	C	ENSMUST00000217320.2	5	ENSMUSG00000081836	missense	T/A	47	Olfr1180	ENSMUST00000217320.2:c.139A>G	ENSMUSP00000150965.1:p.Thr47Ala	H-2-Kb	9	6	6	VSITCAQLM	VSITCTQLM	NetMHC	276.27	295.07	1.068	257	0.171	442.624	327.865	0.741	295.07	276.27	679.5	583.1	325.1696473	424.7271271	330.5597718	460.5215948	M8	1.471428571	1.471428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.179	257	0	0	NA	2qD	chr2-82235500-94430128	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.856658279	sgMsh2	cell line
chr2	117177703	117177703	A	G	ENSMUST00000028829.12	1	ENSMUSG00000027351	missense	I/M	363	Spred1	ENSMUST00000028829.12:c.1089A>G	ENSMUSP00000028829.6:p.Ile363Met	H-2-Kb	9	10	2	CMYQVSCML	CIYQVSCML	SMM	228.618	511.811	2.239	208	0.192	331.205	563.356	1.701	483.81	295.31	614.9	367.1	511.811453	228.6177783	851.6281337	411.386466	M8	0.971428571	0.971428571	TRUE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.198	208	165	38	0.23030303	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.947588487	sgMsh2	cell line
chr2	111379635	111379635	T	C	ENSMUST00000062407.5	5	ENSMUSG00000108931	missense	F/L	212	Olfr1284	ENSMUST00000062407.5:c.634T>C	ENSMUSP00000052153.4:p.Phe212Leu	H-2-Kb	9	5	7	MTLGTFLLL	MTLGTFFLL	NetMHCpan	246.9	192.4	0.779	487	0.236	312.574	264.729	0.847	258.37	322.38	192.4	246.9	271.0878168	302.7680195	408.5545015	416.1500968	M8	2.414285714	2.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.239	487	0	0	NA	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr3	101056598	101056598	G	A	ENSMUST00000102694.3	1	ENSMUSG00000027864	missense	T/I	566	Ptgfrn	ENSMUST00000102694.3:c.1697C>T	ENSMUSP00000099755.3:p.Thr566Ile	H-2-Db	9	6	6	FAAGNIFEM	FAAGNTFEM	NetMHCpan	22.8	30.9	1.355	132	0.22	52.334	52.974	1.012	32.56	31.28	30.9	22.8	73.38714626	73.38714626	96.06606461	82.52204846	M8	0.514285714	1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.244	132	108	25	0.231481481	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr3	80860236	80860236	AT	A	ENSMUST00000029654.14	1	ENSMUSG00000028020	FS	I/X	226	Glrb	ENSMUST00000029654.14:c.676del	ENSMUSP00000029654.8:p.Ile226LeufsTer37	H-2-Db	9	20	0	RRISNMATV	NA	SMMPMBEC	200.249	NA	NA	116	0.207	384.587	NA	NA	NA	531.15	NA	1363	NA	238.0235894	NA	200.2488359	M8	1.057142857	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.21	116	7	0	0	3qE3	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr3	155137385	155137385	AT	A	ENSMUST00000194376.1	1	ENSMUSG00000028182	FS	N/X	298	Lrriq3	ENSMUST00000194376.1:c.897del	ENSMUSP00000142127.1:p.His300ThrfsTer32	H-2-Db	9	7	7	KLWVNFTEV	NA	SMMPMBEC	272.001	NA	NA	209	0.144	443.324	NA	NA	NA	666.64	NA	596.5	NA	290.1482797	NA	272.0006864	M8	0.371428571	0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.16	209	0	0	NA	3qH4	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.76572807	sgMsh2	cell line
chr3	105005546	105005546	C	A	ENSMUST00000077548.11	1	ENSMUSG00000062127	missense	A/S	341	Cttnbp2nl	ENSMUST00000077548.11:c.1021G>T	ENSMUSP00000076751.5:p.Ala341Ser	H-2-Kb	8	11	1	SAYSYAKA	AAYSYAKA	NetMHC	11.09	24.13	2.176	115	0.278	44.921	75.024	1.67	24.13	11.09	53.5	32.2	129.0446488	68.82401428	96.54727043	57.64212727	M8	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.287	115	136	28	0.205882353	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr3	108624645	108624645	A	G	ENSMUST00000051145.14	1	ENSMUSG00000040389	missense	Q/R	449	Wdr47	ENSMUST00000051145.14:c.1346A>G	ENSMUSP00000057482.8:p.Gln449Arg	H-2-Kb	8	11	1	RMYQQMLL	QMYQQMLL	NetMHC	67.4	94.29	1.399	98	0.316	121.812	213.148	1.75	94.29	67.4	182.1	93.4	244.1968177	150.2242346	524.4933667	251.0383085	M8	0.442857143	0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.355	98	13	2	0.153846154	3qF3	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr3	105978389	105978389	T	G	ENSMUST00000000573.8	1	ENSMUSG00000074340	missense	L/R	200	Ovgp1	ENSMUST00000000573.8:c.599T>G	ENSMUSP00000000573.2:p.Leu200Arg	H-2-Kb	8	5	7	TSYDALRL	TSYDALLL	NetMHCpan	51.2	92.7	1.811	139	0.237	65.195	129.261	1.983	119.93	68.34	92.7	51.2	138.5925865	62.04974485	172.480499	72.90209351	M8	-0.1	-0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.231	139	2	1	0.5	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr3	55681028	55681028	T	C	ENSMUST00000029374.7	5	ENSMUSG00000027799	missense	Y/C	2430	Nbea	ENSMUST00000029374.7:c.7289A>G	ENSMUSP00000029374.6:p.Tyr2430Cys	H-2-Kb	8	5	7	LIPEFYCL	LIPEFYYL	NetMHC	75.19	21.65	0.288	128	0.211	204.417	65.929	0.323	21.65	75.19	68.8	218.4	63.0579721	192.1940772	78.11600059	216.6406749	M8	1.028571429	1.028571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.216	128	50	15	0.3	3qC	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr3	105981256	105981256	CA	C	ENSMUST00000000573.8	1	ENSMUSG00000074340	FS	A/X	309	Ovgp1	ENSMUST00000000573.8:c.933del	ENSMUSP00000000573.2:p.Lys311AsnfsTer34	H-2-Kb	8	18	0	INMSRMLL	NA	NetMHCpan	51.6	NA	NA	165	0.23	273.609	NA	NA	NA	89.35	NA	51.6	NA	526.9143181	NA	457.867692	M8	0.371428571	0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.239	165	12	2	0.166666667	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr3	103761538	103761538	T	C	ENSMUST00000118317.7	1	ENSMUSG00000008730	missense	N/S	514	Hipk1	ENSMUST00000118317.7:c.1541A>G	ENSMUSP00000113998.1:p.Asn514Ser	H-2-Kb	8	10	2	LSHQFVTM	LNHQFVTM	NetMHCpan	56.5	91.4	1.618	123	0.211	126.528	289.923	2.291	248.15	93.93	91.4	56.5	381.7156799	206.414404	331.6958211	159.1255801	M8	0.1	0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.216	123	172	32	0.186046512	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr3	105981256	105981256	CA	C	ENSMUST00000000573.8	1	ENSMUSG00000074340	FS	A/X	309	Ovgp1	ENSMUST00000000573.8:c.933del	ENSMUSP00000000573.2:p.Lys311AsnfsTer34	H-2-Kb	8	29	0	SGLAMMTL	NA	NetMHC	176.11	NA	NA	165	0.23	291.397	NA	NA	NA	176.11	NA	308.8	NA	273.9933359	NA	352.1599796	M8	1.728571429	1.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.239	165	12	2	0.166666667	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr3	146584619	146584619	A	C	ENSMUST00000200633.1	1	ENSMUSG00000028185	missense	L/R	199	Dnase2b	ENSMUST00000200633.1:c.596T>G	ENSMUSP00000142872.1:p.Leu199Arg	H-2-Kb	8	5	7	STFHWKRI	STFHWKLI	SMMPMBEC	144.457	341.775	2.366	95	0.179	192.819	354.532	1.839	367.29	243.23	186.2	161.9	499.7352678	223.738128	341.7747702	144.4574685	M8	-0.842857143	-0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.178	95	0	0	NA	3qH2	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.851872478	sgMsh2	cell line
chr3	36568646	36568646	T	C	ENSMUST00000029270.9	1	ENSMUSG00000027715	missense	M/V	236	Ccna2	ENSMUST00000029270.9:c.706A>G	ENSMUSP00000029270.3:p.Met236Val	H-2-Kb	8	11	1	VSVLRGKL	MSVLRGKL	NetMHC	339.84	1508.2	4.438	111	0.216	353.509	926.72	2.621	1508.2	339.84	837.8	340.8	1015.640475	476.1458462	775.7825382	366.2182643	M8	0.314285714	0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.23	111	32	5	0.15625	3qB	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr3	88449737	88449737	A	G	ENSMUST00000029700.11	1	ENSMUSG00000028064	missense	L/P	309	Sema4a	ENSMUST00000029700.11:c.926T>C	ENSMUSP00000029700.5:p.Leu309Pro	H-2-Kb	8	5	7	IIRHAVPL	IIRHAVLL	SMM	169.332	448.477	2.649	92	0.163	247.434	538.144	2.175	1021.35	349.03	569.6	310.9	448.476819	169.3323751	506.6872779	183.9670312	M8	0.714285714	0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.176	92	13	1	0.076923077	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.842300877	sgMsh2	cell line
chr3	107311516	107311516	C	CT	ENSMUST00000029502.13	1	ENSMUSG00000027896	FS	L/LX	478	Slc16a4	ENSMUST00000029502.13:c.1440dup	ENSMUSP00000029502.7:p.Val481CysfsTer5	H-2-Kb	8	9	6	VSLFFCTT	VSLFFVPL	NetMHCpan	99	3.7	0.037	150	0.16	150.102	2.995	0.02	3.56	384.31	3.7	99	2.252890066	166.6249377	2.430748352	133.5795574	M8	1.385714286	2.085714286	FALSE	FALSE	FALSE	1	FALSE	0	Strelka2;Vardict	2	0.16	150	0	0	NA	3qF2.3	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.76572807	sgMsh2	cell line
chr3	90190923	90190923	C	T	ENSMUST00000029548.8	5	ENSMUSG00000027939	missense	S/L	1394	Nup210l	ENSMUST00000029548.8:c.4181C>T	ENSMUSP00000029548.4:p.Ser1394Leu	H-2-Kb	8	8	4	RTLLAFPL	RTLSAFPL	NetMHCpan	184	237.9	1.293	206	0.272	202.884	249.781	1.231	490.66	429.13	237.9	184	235.9065504	193.0812048	261.6616044	212.686537	M8	1.957142857	1.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.262	206	0	0	NA	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr3	108427274	108427274	T	C	ENSMUST00000102625.10	1	ENSMUSG00000068739	missense	E/G	482	Sars	ENSMUST00000102625.10:c.1445A>G	ENSMUSP00000099685.4:p.Glu482Gly	H-2-Kb	8	10	2	RGFMPPGL	REFMPPGL	NetMHCpan	383.8	7709.2	20.087	71	0.225	469.11	4903.442	10.453	11274.09	661.3	7709.2	383.8	2097.683683	475.0507412	1975.786438	463.16955	M8	0.642857143	0.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.229	71	1337	247	0.18474196	3qF3	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr3	68927791	68927791	A	G	ENSMUST00000107812.7	5	ENSMUSG00000027778	missense	I/T	439	Ift80	ENSMUST00000107812.7:c.1316T>C	ENSMUSP00000103442.1:p.Ile439Thr	H-2-Kb	8	11	1	TIFLFEAS	IIFLFEAS	SMM	114.483	40.902	0.357	81	0.296	496.639	214.122	0.431	378.83	1363.31	368.3	827.8	40.90157201	114.482736	59.94321055	165.4778997	M8	1.628571429	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.289	81	39	3	0.076923077	3qE1	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr3	89266743	89266743	T	G	ENSMUST00000107462.7	3	ENSMUSG00000042737	missense	L/V	4	Dpm3	ENSMUST00000107462.7:c.10T>G	ENSMUSP00000103086.1:p.Leu4Val	H-2-Kb	8	4	1	VTQWLWGL	LTQWLWGL	SMM	283.622	1434.63	5.058	72	0.222	404.513	1559.675	3.856	6651.54	1488.78	1453.1	408.4	1434.630303	283.6220554	1666.249377	400.6268017	M8	0.171428571	0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.224	72	103	21	0.203883495	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr3	157312902	157312902	C	T	ENSMUST00000074015.10	1	ENSMUSG00000040037	missense	L/F	347	Negr1	ENSMUST00000074015.10:c.1039C>T	ENSMUSP00000073664.4:p.Leu347Phe	H-2-Kb	9	12	9	IFYLKNAIF	IFYLKNAIL	SMM	146.592	86.918	0.593	131	0.16	161.23	88.179	0.547	89.44	172.75	131.7	353.4	86.91805512	146.5919088	86.54659777	149.7097207	M8	0.6	0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.18	131	0	0	NA	3qH4	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.861444079	sgMsh2	cell line
chr3	68927791	68927791	A	G	ENSMUST00000107812.7	5	ENSMUSG00000027778	missense	I/T	439	Ift80	ENSMUST00000107812.7:c.1316T>C	ENSMUSP00000103442.1:p.Ile439Thr	H-2-Kb	9	11	1	TIFLFEAST	IIFLFEAST	NetMHC	181.4	78.59	0.433	81	0.296	236.705	140.504	0.594	78.59	181.4	219.4	418.7	139.6722084	239.3922023	141.3350901	234.0183969	M8	0.885714286	1.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.289	81	39	3	0.076923077	3qE1	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr3	80860236	80860236	AT	A	ENSMUST00000029654.14	1	ENSMUSG00000028020	FS	I/X	226	Glrb	ENSMUST00000029654.14:c.676del	ENSMUSP00000029654.8:p.Ile226LeufsTer37	H-2-Kb	9	6	6	VQLEKLLYL	VQLEKIALP	NetMHC	204.77	13999.81	68.368	116	0.207	281.513	8030.813	28.527	13999.81	204.77	16761.3	288.8	1256.348137	274.2268658	2061.816449	309.2074862	M8	0.928571429	0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.21	116	7	0	0	3qE3	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr3	95008482	95008482	T	C	ENSMUST00000019482.7	1	ENSMUSG00000019338	missense	K/R	993	Zfp687	ENSMUST00000019482.7:c.2978A>G	ENSMUSP00000019482.1:p.Lys993Arg	H-2-Kb	9	8	4	SVKRFPCRL	SVKKFPCRL	NetMHCpan	181.6	255.5	1.407	81	0.198	436.752	462.473	1.059	295.28	204.99	255.5	181.6	629.6656471	668.5132201	679.5947262	729.8775406	M8	-0.771428571	-0.185714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.224	81	37	8	0.216216216	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr3	155137385	155137385	AT	A	ENSMUST00000194376.1	1	ENSMUSG00000028182	FS	N/X	298	Lrriq3	ENSMUST00000194376.1:c.897del	ENSMUSP00000142127.1:p.His300ThrfsTer32	H-2-Kb	9	21	0	LTFHQYKGI	NA	NetMHCpan	249.3	NA	NA	209	0.144	334.616	NA	NA	NA	317.47	NA	249.3	NA	377.6678362	NA	351.7628732	M8	-0.714285714	-0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.16	209	0	0	NA	3qH4	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.76572807	sgMsh2	cell line
chr3	155137385	155137385	AT	A	ENSMUST00000194376.1	1	ENSMUSG00000028182	FS	N/X	298	Lrriq3	ENSMUST00000194376.1:c.897del	ENSMUSP00000142127.1:p.His300ThrfsTer32	H-2-Kb	9	10	4	VNFTEVGWM	NA	SMMPMBEC	346.937	NA	NA	209	0.144	357.03	NA	NA	NA	962.72	NA	361.6	NA	352.4601324	NA	346.9365057	M8	0.485714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.16	209	0	0	NA	3qH4	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.76572807	sgMsh2	cell line
chr4	136554214	136554214	T	A	ENSMUST00000105847.7	5	ENSMUSG00000036940	missense	K/M	682	Kdm1a	ENSMUST00000105847.7:c.2045A>T	ENSMUSP00000101473.1:p.Lys682Met	H-2-Db	9	6	6	FGNLNMVVL	FGNLNKVVL	NetMHC	15.68	50.61	3.228	137	0.277	76.126	173.018	2.273	50.61	15.68	144.4	54.4	281.5917975	138.8736979	201.6368945	97.8520661	M8	1.557142857	1.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.286	137	242	15	0.061983471	4qD3	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr4	155268251	155268251	T	G	ENSMUST00000030922.14	1	ENSMUSG00000029053	missense	K/T	473	Prkcz	ENSMUST00000030922.14:c.1418A>C	ENSMUSP00000030922.7:p.Lys473Thr	H-2-Db	9	5	7	FQVILETPI	FQVILEKPI	NetMHC	96.91	1744.74	18.004	239	0.226	220.135	1380.05	6.269	1744.74	96.91	2345.3	278.3	1015.359882	224.7087583	992.1332393	215.5609059	M8	1.6	1.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.229	239	20	3	0.15	4qE2	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr4	45307923	45307923	CT	C	ENSMUST00000044673.8	1	ENSMUSG00000035601	FS	L/X	203	Trmt10b	ENSMUST00000044673.8:c.612del	ENSMUSP00000041052.2:p.Pro205LeufsTer8	H-2-Db	9	9	5	FSLFLWKPL	FSLFPLETL	SMM	212.628	545.281	2.564	313	0.252	281.074	540.89	1.924	345.62	310.63	884.2	463.6	545.2805415	212.6277776	536.5003381	251.518538	M8	1.114285714	1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.254	313	73	5	0.068493151	4qB1	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr4	144377206	144377206	C	T	ENSMUST00000121109.1	5	ENSMUSG00000073721	missense	V/M	117	Pramef20	ENSMUST00000121109.1:c.349G>A	ENSMUSP00000112488.1:p.Val117Met	H-2-Kb	8	4	8	VGQNYLNM	VGQNYLNV	NetMHC	33.67	39.73	1.18	106	0.283	97.043	102.316	1.054	39.73	33.67	157.2	99.3	84.47729517	94.78508415	120.1544888	129.9391436	M8	-0.928571429	-0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.283	106	0	0	NA	4qE1	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr4	155966486	155966486	T	C	ENSMUST00000024338.4	1	ENSMUSG00000023571	missense	M/T	304	C1qtnf12	ENSMUST00000024338.4:c.911T>C	ENSMUSP00000024338.4:p.Met304Thr	H-2-Kb	8	12	6	SSFSGTLL	SSFSGMLL	NetMHCpan	66.9	50.3	0.752	190	0.311	86.988	70.723	0.813	34.09	71	50.3	66.9	95.22259222	121.8260042	91.14650073	102.9769442	M8	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.292	190	18	8	0.444444444	4qE2	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr4	45307923	45307923	CT	C	ENSMUST00000044673.8	1	ENSMUSG00000035601	FS	L/X	203	Trmt10b	ENSMUST00000044673.8:c.612del	ENSMUSP00000041052.2:p.Pro205LeufsTer8	H-2-Kb	8	10	4	SLFLWKPL	SLFPLETL	NetMHCpan	45.9	278.7	6.072	313	0.252	65.889	861.472	13.075	1564.85	78.53	278.7	45.9	803.0452175	78.47656766	919.8986892	53.30156983	M8	1.114285714	1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.254	313	73	5	0.068493151	4qB1	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr4	139640665	139640665	A	G	ENSMUST00000039818.9	1	ENSMUSG00000028737	missense	T/A	306	Aldh4a1	ENSMUST00000039818.9:c.916A>G	ENSMUSP00000043821.9:p.Thr306Ala	H-2-Kb	8	8	4	RFRAFPRL	RFRTFPRL	SMM	54.293	53.179	0.979	94	0.181	87.052	74.246	0.853	78.71	97.59	160.4	151.2	53.17897962	54.29252	69.78145169	76.51384027	M8	0.085714286	0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.197	94	15	2	0.133333333	4qD3	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.942802686	sgMsh2	cell line
chr4	115068554	115068554	TC	T	ENSMUST00000030489.8	1	ENSMUSG00000028717	FS	I/X	273	Tal1	ENSMUST00000030489.8:c.824del	ENSMUSP00000030489.2:p.Pro275LeufsTer82	H-2-Kb	8	77	0	QAGAFRPL	NA	NetMHC	137.79	NA	NA	29	0.276	228.578	NA	NA	NA	137.79	NA	588.8	NA	207.8452003	NA	249.310173	M8	0.528571429	0.528571429	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.248	29	0	0	NA	4qD1	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr4	120886945	120886945	C	T	ENSMUST00000071093.8	1	ENSMUSG00000032890	missense	P/L	124	Rims3	ENSMUST00000071093.8:c.371C>T	ENSMUSP00000068178.2:p.Pro124Leu	H-2-Kb	8	7	5	TFIFLTRL	TFIFPTRL	NetMHCpan	49.6	106	2.137	108	0.12	194.02	549.467	2.832	531.73	162.75	106	49.6	567.204934	225.2890066	685.0779666	240.8463117	M8	1.785714286	1.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.138	108	0	0	NA	4qD2.2	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.660440461	sgMsh2	cell line
chr4	155069021	155069021	T	G	ENSMUST00000103180.3	1	ENSMUSG00000029047	missense	I/M	182	Pex10	ENSMUST00000103180.3:c.546T>G	ENSMUSP00000099469.3:p.Ile182Met	H-2-Kb	8	11	1	MHGTFYHL	IHGTFYHL	SMMPMBEC	155.503	71.571	0.46	120	0.242	235.779	80.872	0.343	80.51	309.1	169.9	352	81.23440428	162.4575876	71.57148034	155.5034397	M8	-0.314285714	-0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.24	120	6	1	0.166666667	4qE2	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr4	32773266	32773266	C	T	ENSMUST00000178134.1	5	ENSMUSG00000058006	missense	A/V	5475	Mdn1	ENSMUST00000178134.1:c.16424C>T	ENSMUSP00000136222.1:p.Ala5475Val	H-2-Kb	8	6	6	VSPETVQL	VSPETAQL	NetMHC	311.52	71.04	0.228	100	0.22	356.667	123.529	0.346	71.04	311.52	285.5	583	122.1068422	352.9717922	124.9510759	360.3628392	M8	-0.3	-0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.239	100	54	12	0.222222222	4qA5	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr4	20064005	20064005	A	C	ENSMUST00000098242.3	1	ENSMUSG00000073987	missense	K/T	234	Ggh	ENSMUST00000098242.3:c.701A>C	ENSMUSP00000095843.3:p.Lys234Thr	H-2-Kb	8	10	2	FTYPVYAV	FKYPVYAV	SMM	232.135	1272.741	5.483	137	0.255	311.21	3820.621	12.277	5414.14	319.82	5562.8	302.6	1272.740898	232.1346655	2227.101447	387.9180607	M8	0.757142857	0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.246	137	195	50	0.256410256	4qA3	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr4	144373053	144373053	A	T	ENSMUST00000121109.1	5	ENSMUSG00000073721	missense	F/I	381	Pramef20	ENSMUST00000121109.1:c.1141T>A	ENSMUSP00000112488.1:p.Phe381Ile	H-2-Kb	8	11	1	ISFYGNQI	FSFYGNQI	NetMHCpan	98.2	564.6	5.749	261	0.249	328.538	1504.651	4.58	1903.95	319.99	564.6	98.2	1785.418375	523.2870654	1223.883275	337.0854446	M8	-0.314285714	-0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	261	0	0	NA	4qE1	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr5	3673162	3673162	T	C	ENSMUST00000014673.8	1	ENSMUSG00000014529	missense	I/T	231	Tmbim7	ENSMUST00000014673.8:c.692T>C	ENSMUSP00000014673.2:p.Ile231Thr	H-2-Kb	8	7	5	LIYGTIAL	LIYGIIAL	SMMPMBEC	338.641	366.218	1.081	164	0.226	379.899	400.735	1.055	501.32	404.38	344.3	444	435.2512229	355.4184757	366.2182643	338.6413603	M8	1.742857143	1.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	164	0	0	NA	5qA1	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr5	3673162	3673162	T	C	ENSMUST00000014673.8	1	ENSMUSG00000014529	missense	I/T	231	Tmbim7	ENSMUST00000014673.8:c.692T>C	ENSMUSP00000014673.2:p.Ile231Thr	H-2-Kb	8	5	7	VLLIYGTI	VLLIYGII	NetMHCpan	142	579.7	4.082	164	0.226	310.354	756.542	2.438	1677.7	445.42	579.7	142	772.2181412	337.0854446	740.8665723	283.6220554	M8	2.028571429	2.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	164	0	0	NA	5qA1	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr4	155069021	155069021	T	G	ENSMUST00000103180.3	1	ENSMUSG00000029047	missense	I/M	182	Pex10	ENSMUST00000103180.3:c.546T>G	ENSMUSP00000099469.3:p.Ile182Met	H-2-Kb	8	6	6	VAWFYMHG	VAWFYIHG	SMM	88.052	124.377	1.413	120	0.242	255.688	481.612	1.884	1556.42	599.87	818.1	399.5	124.3769779	88.05215715	145.1242539	111.8767908	M8	0.1	0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.24	120	6	1	0.166666667	4qE2	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr4	53083890	53083890	A	G	ENSMUST00000030010.3	1	ENSMUSG00000015243	missense	W/R	648	Abca1	ENSMUST00000030010.3:c.1942T>C	ENSMUSP00000030010.3:p.Trp648Arg	H-2-Kb	8	11	1	RIYSVAVI	WIYSVAVI	SMM	334.765	451.586	1.349	84	0.167	400.859	795.858	1.985	1140.13	619.27	1407.1	446.3	451.5855118	334.7649647	409.0157201	355.4184757	M8	2.442857143	2.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.195	84	17	6	0.352941176	4qB2	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.933231086	sgMsh2	cell line
chr4	41093679	41093679	A	G	ENSMUST00000055327.7	1	ENSMUSG00000028435	missense	V/A	245	Aqp3	ENSMUST00000055327.7:c.734T>C	ENSMUSP00000055110.7:p.Val245Ala	H-2-Kb	8	6	6	RHWWWAPI	RHWWWVPI	NetMHCpan	222.3	379.8	1.709	61	0.18	438.129	1265.319	2.888	2567.84	683.29	379.8	222.3	1512.655393	523.2870654	1017.981768	352.9717922	M8	-0.171428571	-0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.194	61	3	0	0	4qA5	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.928445285	sgMsh2	cell line
chr4	143895385	143895385	T	C	ENSMUST00000105767.1	5	ENSMUSG00000078512	missense	I/V	467	Pramef6	ENSMUST00000105767.1:c.1399A>G	ENSMUSP00000101393.1:p.Ile467Val	H-2-Kb	9	13	2	CVYSFVGNI	CIYSFVGNI	NetMHC	23.45	22.06	0.941	251	0.287	90.759	96.799	1.067	22.06	23.45	42.9	35.6	150.6988715	145.9183802	252.4933823	247.8848587	M8	0.785714286	1.6	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.289	251	0	0	NA	4qE1	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr4	124942369	124942369	T	C	ENSMUST00000094769.12	1	ENSMUSG00000044730	missense	Y/H	158	9930104L06Rik	ENSMUST00000094769.12:c.472T>C	ENSMUSP00000154851.1:p.Tyr158His	H-2-Kb	9	4	8	SSYLKRKHL	SSYLKRKYL	NetMHC	33.01	28.82	0.873	149	0.242	69.015	66.097	0.958	28.82	33.01	64.1	72.7	68.09418088	65.32960014	84.382036	77.13473645	M8	-1.314285714	-1.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.23	149	7	1	0.142857143	4qD2.2	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr4	120886945	120886945	C	T	ENSMUST00000071093.8	1	ENSMUSG00000032890	missense	P/L	124	Rims3	ENSMUST00000071093.8:c.371C>T	ENSMUSP00000068178.2:p.Pro124Leu	H-2-Kb	9	6	6	GTFIFLTRL	GTFIFPTRL	NetMHCpan	28.1	39.6	1.409	108	0.12	60.436	144.364	2.389	86.31	36.1	39.6	28.1	215.332707	91.43448014	202.4184057	84.77152578	M8	1.785714286	1.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.138	108	0	0	NA	4qD2.2	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.660440461	sgMsh2	cell line
chr4	104679526	104679526	GA	G	ENSMUST00000106830.8	1	ENSMUSG00000028519	FS	E/X	171	Dab1	ENSMUST00000106830.8:c.518del	ENSMUSP00000102443.2:p.Lys173ArgfsTer68	H-2-Kb	9	57	0	RTFTRFPPA	NA	NetMHCpan	78.3	NA	NA	110	0.255	222.469	NA	NA	NA	135.73	NA	78.3	NA	419.8653158	NA	309.2074862	M8	-0.142857143	-0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.26	110	0	0	NA	4qC6	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr4	155069021	155069021	T	G	ENSMUST00000103180.3	1	ENSMUSG00000029047	missense	I/M	182	Pex10	ENSMUST00000103180.3:c.546T>G	ENSMUSP00000099469.3:p.Ile182Met	H-2-Kb	9	10	2	YMHGTFYHL	YIHGTFYHL	NetMHC	159.62	219.23	1.373	120	0.242	188.296	355.71	1.889	219.23	159.62	277.8	182.9	433.6206938	193.6912491	687.4640623	332.0855664	M8	-0.314285714	-0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.24	120	6	1	0.166666667	4qE2	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr4	45307923	45307923	CT	C	ENSMUST00000044673.8	1	ENSMUSG00000035601	FS	L/X	203	Trmt10b	ENSMUST00000044673.8:c.612del	ENSMUSP00000041052.2:p.Pro205LeufsTer8	H-2-Kb	9	9	5	FSLFLWKPL	FSLFPLETL	NetMHCpan	127.2	1483.2	11.66	313	0.252	215.539	984.497	4.568	761.94	209.13	1483.2	127.2	889.4263671	253.577082	1079.567993	221.9473684	M8	1.114285714	1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.254	313	73	5	0.068493151	4qB1	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr4	155069021	155069021	T	G	ENSMUST00000103180.3	1	ENSMUSG00000029047	missense	I/M	182	Pex10	ENSMUST00000103180.3:c.546T>G	ENSMUSP00000099469.3:p.Ile182Met	H-2-Kb	9	7	5	AWFYMHGTF	AWFYIHGTF	SMM	130.05	341.279	2.624	120	0.242	193.94	435.221	2.244	455.25	209.54	926.2	545.8	341.2793414	130.0498932	415.1929781	178.3405083	M8	0.271428571	0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.24	120	6	1	0.166666667	4qE2	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr4	143895385	143895385	T	C	ENSMUST00000105767.1	5	ENSMUSG00000078512	missense	I/V	467	Pramef6	ENSMUST00000105767.1:c.1399A>G	ENSMUSP00000101393.1:p.Ile467Val	H-2-Kb	9	10	5	RNFCVYSFV	RNFCIYSFV	NetMHCpan	85.7	73	0.852	251	0.287	357.494	308.946	0.864	234.97	248.06	73	85.7	382.9217191	472.1826226	388.3738676	466.9280884	M8	2.057142857	2.057142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.289	251	0	0	NA	4qE1	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr5	3673162	3673162	T	C	ENSMUST00000014673.8	1	ENSMUSG00000014529	missense	I/T	231	Tmbim7	ENSMUST00000014673.8:c.692T>C	ENSMUSP00000014673.2:p.Ile231Thr	H-2-Kb	9	7	5	LIYGTIALV	LIYGIIALV	NetMHC	255.57	661.63	2.589	164	0.226	399.072	568.543	1.425	661.63	255.57	1069.9	902.4	475.4556362	346.02701	472.3348608	452.1161284	M8	1.7	1.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	164	0	0	NA	5qA1	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr4	144377206	144377206	C	T	ENSMUST00000121109.1	5	ENSMUSG00000073721	missense	V/M	117	Pramef20	ENSMUST00000121109.1:c.349G>A	ENSMUSP00000112488.1:p.Val117Met	H-2-Kb	9	3	9	SVGQNYLNM	SVGQNYLNV	NetMHC	302.63	406.24	1.342	106	0.283	468.582	787.381	1.68	406.24	302.63	1416.5	771.7	783.6280984	458.2579416	791.1339102	478.9056933	M8	-0.928571429	-0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.283	106	0	0	NA	4qE1	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr4	139640665	139640665	A	G	ENSMUST00000039818.9	1	ENSMUSG00000028737	missense	T/A	306	Aldh4a1	ENSMUST00000039818.9:c.916A>G	ENSMUSP00000043821.9:p.Thr306Ala	H-2-Kb	9	4	8	QNLDRFRAF	QNLDRFRTF	SMM	226.001	239.944	1.062	94	0.181	312.457	354.948	1.136	385.37	323.44	1098.6	1301.5	239.9440583	226.0008122	324.526376	301.4740949	M8	-0.185714286	-0.185714286	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.197	94	15	2	0.133333333	4qD3	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.942802686	sgMsh2	cell line
chr4	104679526	104679526	GA	G	ENSMUST00000106830.8	1	ENSMUSG00000028519	FS	E/X	171	Dab1	ENSMUST00000106830.8:c.518del	ENSMUSP00000102443.2:p.Lys173ArgfsTer68	H-2-Kb	9	24	0	CTRPFWKRM	NA	NetMHCpan	330.5	NA	NA	110	0.255	394.527	NA	NA	NA	367.25	NA	330.5	NA	421.8033261	NA	629.8686601	M8	-1.528571429	-0.9	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.26	110	0	0	NA	4qC6	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr4	35708322	35708322	G	T	ENSMUST00000164772.7	1	ENSMUSG00000045083	missense	L/M	553	Lingo2	ENSMUST00000164772.7:c.1657C>A	ENSMUSP00000130423.1:p.Leu553Met	H-2-Kb	9	3	9	TAMGCFTFM	TAMGCFTFL	NetMHCpan	240.3	132.2	0.55	183	0.295	352.831	198.935	0.564	148.84	368.18	132.2	240.3	304.1655332	400.0460623	249.0290432	337.4815227	M8	1.542857143	1.542857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.29	183	0	0	NA	4qA5	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr5	3673162	3673162	T	C	ENSMUST00000014673.8	1	ENSMUSG00000014529	missense	I/T	231	Tmbim7	ENSMUST00000014673.8:c.692T>C	ENSMUSP00000014673.2:p.Ile231Thr	H-2-Kb	9	4	8	SVLLIYGTI	SVLLIYGII	NetMHCpan	276.2	1014.9	3.675	164	0.226	446.055	804.767	1.804	1087.34	388.32	1014.9	276.2	565.0800826	505.9527957	594.6343592	503.7905305	M8	2.028571429	2.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	164	0	0	NA	5qA1	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr4	155069021	155069021	T	G	ENSMUST00000103180.3	1	ENSMUSG00000029047	missense	I/M	182	Pex10	ENSMUST00000103180.3:c.546T>G	ENSMUSP00000099469.3:p.Ile182Met	H-2-Kb	9	6	6	VAWFYMHGT	VAWFYIHGT	SMMPMBEC	296.654	386.589	1.303	120	0.242	366.731	465.832	1.27	684.88	393.67	468.1	352.3	463.5643185	381.1623536	386.5894518	296.6538575	M8	-0.257142857	0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.24	120	6	1	0.166666667	4qE2	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr4	134853048	134853048	T	C	ENSMUST00000030628.14	1	ENSMUSG00000028826	missense	I/V	24	Maco1	ENSMUST00000030628.14:c.70A>G	ENSMUSP00000030628.7:p.Ile24Val	H-2-Kb	9	11	1	VYGSTFLYL	IYGSTFLYL	SMM	209.464	308.397	1.472	15	0.2	391.129	504.01	1.289	551.72	437.71	595.7	551.2	308.3968972	209.4642929	456.2995075	344.5482116	M8	1.028571429	1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.248	15	78	19	0.243589744	4qD3	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr4	32712071	32712071	CA	C	ENSMUST00000178134.1	5	ENSMUSG00000058006	FS	Q/X	1863	Mdn1	ENSMUST00000178134.1:c.5591del	ENSMUSP00000136222.1:p.Asn1864IlefsTer30	H-2-Kb	9	6	7	RIFGCQIPL	RIFGCQNPF	NetMHCpan	425.1	1264.4	2.974	108	0.278	456.767	881.369	1.93	975.24	454.22	1264.4	425.1	673.1471323	459.3143352	787.4989801	477.8042407	M8	1.157142857	1.257142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.306	108	37	5	0.135135135	4qA5	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr5	34848948	34848948	T	A	ENSMUST00000080036.2	1	ENSMUSG00000029104	missense	H/Q	1400	Htt	ENSMUST00000080036.2:c.4200T>A	ENSMUSP00000078945.2:p.His1400Gln	H-2-Db	9	8	4	NAIQNHIRL	NAIHNHIRL	NetMHCpan	42.5	130.5	3.071	267	0.288	128.892	250.646	1.945	219.7	50.95	130.5	42.5	281.5917975	206.8330804	333.8643134	252.6794949	M8	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.289	267	37	10	0.27027027	5qB2	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr5	63806698	63806698	A	T	ENSMUST00000159584.2	1	ENSMUSG00000090061	missense	K/N	1208	Nwd2	ENSMUST00000159584.2:c.3624A>T	ENSMUSP00000124712.1:p.Lys1208Asn	H-2-Db	9	7	5	ILICNALSI	ILICKALSI	NetMHCpan	141.1	7481.9	53.026	201	0.224	238.859	9795.44	41.009	18580.86	208.18	7481.9	141.1	8762.337965	269.537999	10828.54237	322.5299134	M8	1.828571429	2.485714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.22	201	0	0	NA	5qC3.1	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr5	105015021	105015021	GT	G	ENSMUST00000031235.12	5	ENSMUSG00000034438	FS	K/X	502	Gbp8	ENSMUST00000031235.12:c.1506del	ENSMUSP00000031235.6:p.Lys502AsnfsTer33	H-2-Kb	8	24	0	ASFIFSPI	NA	NetMHC	3.58	NA	NA	144	0.25	6.633	NA	NA	NA	3.58	NA	3.7	NA	11.08510982	NA	9.566211974	M8	1.628571429	1.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.244	144	0	0	NA	5qE5	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr5	57721359	57721359	T	C	ENSMUST00000191837.5	1	ENSMUSG00000029108	missense	L/S	752	Pcdh7	ENSMUST00000191837.5:c.2255T>C	ENSMUSP00000142319.1:p.Leu752Ser	H-2-Kb	8	5	7	RNISYTSL	RNISYTLL	NetMHC	17.31	17.09	0.987	284	0.218	37.571	44.968	1.197	17.09	17.31	18.2	19.2	71.73646964	55.94225905	78.83879904	59.94321055	M8	0.171428571	0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.223	284	64	0	0	5qC1	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr5	20886561	20886561	A	G	ENSMUST00000115259.2	1	ENSMUSG00000045435	missense	Y/C	108	Tmem60	ENSMUST00000115259.2:c.323A>G	ENSMUSP00000110914.2:p.Tyr108Cys	H-2-Kb	8	9	3	LSCVFIPL	LSYVFIPL	SMMPMBEC	18.739	1.883	0.1	235	0.268	26.189	2.268	0.087	2.35	26.63	3.4	62.9	2.186452264	25.74779247	1.882521739	18.73872337	M8	2.2	2.2	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.275	235	135	32	0.237037037	5qA3	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr5	138178383	138178383	T	G	ENSMUST00000019662.10	1	ENSMUSG00000019518	missense	L/R	415	Ap4m1	ENSMUST00000019662.10:c.1244T>G	ENSMUSP00000019662.4:p.Leu415Arg	H-2-Kb	8	11	1	RQVRFLRL	LQVRFLRL	NetMHC	71.37	78.51	1.1	143	0.315	93.035	90.625	0.974	78.51	71.37	51	85.9	129.6402918	108.5775406	102.7401038	100.1705365	M8	0.3	0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.301	143	37	8	0.216216216	5qG2	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr5	108332781	108332781	A	G	ENSMUST00000119014.7	5	ENSMUSG00000029263	missense	Y/C	477	Pigg	ENSMUST00000119014.7:c.1430A>G	ENSMUSP00000113818.1:p.Tyr477Cys	H-2-Kb	8	6	6	FSLLFCLV	FSLLFYLV	SMM	71.902	52.935	0.736	223	0.202	76.606	57.279	0.748	45.37	73.46	168.1	165.1	52.93464441	71.90183929	61.62259741	79.75170931	M8	2.871428571	2.871428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.206	223	14	3	0.214285714	5qF	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.98587489	sgMsh2	cell line
chr5	110277756	110277756	A	G	ENSMUST00000031472.11	1	ENSMUSG00000029499	missense	F/L	138	Pxmp2	ENSMUST00000031472.11:c.412T>C	ENSMUSP00000031472.5:p.Phe138Leu	H-2-Kb	8	8	4	VSVLVAKM	VSVFVAKM	NetMHC	116.68	141.33	1.211	126	0.286	223.541	229.414	1.026	141.33	116.68	47.9	183	323.3999884	288.2305431	317.4972734	264.0827294	M8	1.6	1.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.286	126	3	1	0.333333333	5qF	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr5	86538011	86538011	T	C	ENSMUST00000116553.8	1	ENSMUSG00000048764	missense	M/V	166	Tmprss11f	ENSMUST00000116553.8:c.496A>G	ENSMUSP00000112252.2:p.Met166Val	H-2-Kb	8	9	3	ISVPSFSL	ISMPSFSL	NetMHCpan	102.9	36.1	0.351	163	0.196	207.483	135.317	0.652	55.98	137.8	36.1	102.9	214.6545013	277.1660292	219.1492557	335.5366776	M8	0.971428571	1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.207	163	0	0	NA	5qE1	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.990660691	sgMsh2	cell line
chr5	16359028	16359028	T	C	ENSMUST00000039370.13	1	ENSMUSG00000040118	missense	V/A	903	Cacna2d1	ENSMUST00000039370.13:c.2708T>C	ENSMUSP00000049457.7:p.Val903Ala	H-2-Kb	8	4	8	KSYDYQSA	KSYDYQSV	NetMHCpan	154.7	15.4	0.1	100	0.23	204.33	27.778	0.136	12.68	168.92	15.4	154.7	40.15503419	239.7397234	51.49202839	247.5939338	M8	-1.342857143	-1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.224	100	10	0	0	5qA3	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr5	143373198	143373198	CA	C	ENSMUST00000110733.8	1	ENSMUSG00000010825	FS	A/X	252	Grid2ip	ENSMUST00000110733.8:c.757del	ENSMUSP00000106361.2:p.Thr253ProfsTer66	H-2-Kb	8	51	0	LSCLAARL	NA	SMMPMBEC	117.69	NA	NA	35	0.286	231.458	NA	NA	NA	310.25	NA	703.1	NA	152.6651821	NA	117.6901185	M8	1.2	1.2	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.323	35	0	0	NA	5qG2	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr5	34848948	34848948	T	A	ENSMUST00000080036.2	1	ENSMUSG00000029104	missense	H/Q	1400	Htt	ENSMUST00000080036.2:c.4200T>A	ENSMUSP00000078945.2:p.His1400Gln	H-2-Kb	8	9	3	AIQNHIRL	AIHNHIRL	SMM	233.206	203.582	0.873	267	0.288	335.761	210.611	0.627	187.86	352.56	450.7	1017.2	203.5822922	233.2061504	217.6406428	318.9627742	M8	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.289	267	37	10	0.27027027	5qB2	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr5	123758488	123758488	A	G	ENSMUST00000031366.11	1	ENSMUSG00000029414	missense	N/D	138	Kntc1	ENSMUST00000031366.11:c.412A>G	ENSMUSP00000031366.7:p.Asn138Asp	H-2-Kb	8	5	7	SQRTYRDL	SQRTYRNL	SMM	239.74	37.217	0.155	164	0.512	352.064	42.914	0.122	25.66	412.56	218.3	1756.2	37.21688324	239.7397234	48.61160944	291.5680954	M8	-2.028571429	-2.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.495	164	12	7	0.583333333	5qF	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr5	143373198	143373198	CA	C	ENSMUST00000110733.8	1	ENSMUSG00000010825	FS	A/X	252	Grid2ip	ENSMUST00000110733.8:c.757del	ENSMUSP00000106361.2:p.Thr253ProfsTer66	H-2-Kb	8	17	0	VALALGVL	NA	SMM	226.851	NA	NA	35	0.286	270.856	NA	NA	NA	422.56	NA	272.1	NA	226.8506354	NA	269.6124854	M8	2.685714286	2.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.323	35	0	0	NA	5qG2	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr5	29478259	29478259	T	A	ENSMUST00000165512.3	1	ENSMUSG00000001566	missense	N/I	6	Mnx1	ENSMUST00000165512.3:c.17A>T	ENSMUSP00000129503.2:p.Asn6Ile	H-2-Kb	8	5	2	KIFRIDAL	KNFRIDAL	NetMHCpan	239.7	176.2	0.735	64	0.312	312.442	360.883	1.155	460.29	468.11	176.2	239.7	352.1599796	316.0385059	369.6068402	308.8445912	M8	1.342857143	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.304	64	0	0	NA	5qB1	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr5	87694728	87694728	C	T	ENSMUST00000197422.4	1	ENSMUSG00000063157	missense	A/T	147	Csn2	ENSMUST00000197422.4:c.439G>A	ENSMUSP00000143341.1:p.Ala147Thr	H-2-Kb	8	9	3	SLTSLANL	SLASLANL	SMM	381.716	341.775	0.895	203	0.493	487.6	375.638	0.77	720.32	664.91	348.8	569	341.7747702	381.7156799	402.476011	406.2000757	M8	1.171428571	1.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.5	203	0	0	NA	5qE1	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr5	101944143	101944143	T	A	ENSMUST00000053177.13	1	ENSMUSG00000043940	missense	K/N	443	Wdfy3	ENSMUST00000053177.13:c.1329A>T	ENSMUSP00000052607.7:p.Lys443Asn	H-2-Kb	9	8	4	VQNNYFEML	VQNKYFEML	NetMHC	62.66	107.77	1.72	189	0.238	165.336	170.625	1.032	107.77	62.66	106.6	107.7	272.3391013	275.4926395	233.4801695	222.9718309	M8	-0.471428571	-0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.248	189	54	11	0.203703704	5qE5	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr5	52848016	52848016	A	G	ENSMUST00000031072.13	1	ENSMUSG00000029176	missense	Q/R	301	Anapc4	ENSMUST00000031072.13:c.902A>G	ENSMUSP00000031072.7:p.Gln301Arg	H-2-Kb	9	9	3	SVRDEFMHL	SVQDEFMHL	NetMHCpan	107.4	185.5	1.727	42	0.214	228.321	411.963	1.804	155.92	116.93	185.5	107.4	638.4251688	339.7113053	843.82036	474.5150595	M8	-0.885714286	-0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.217	42	124	27	0.217741935	5qC1	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr5	136012389	136012389	A	G	ENSMUST00000111142.8	1	ENSMUSG00000004947	missense	H/R	216	Dtx2	ENSMUST00000111142.8:c.647A>G	ENSMUSP00000106772.2:p.His216Arg	H-2-Kb	9	5	7	VSGRYRRSM	VSGRYRHSM	NetMHC	126.92	219.53	1.73	136	0.213	380.787	348.038	0.914	219.53	126.92	353.9	562.6	361.5014137	382.0410236	342.1763584	379.5333991	M8	-2.014285714	-1.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.233	136	32	6	0.1875	5qG2	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr5	137758482	137758482	TG	T	ENSMUST00000110985.1	2	ENSMUSG00000029723	FS	L/X	57	Tsc22d4	ENSMUST00000110985.1:c.177del	ENSMUSP00000106613.1:p.Pro60GlnfsTer18	H-2-Kb	9	22	0	VGWTKAFSL	NA	NetMHCpan	103.3	NA	NA	70	0.529	321.493	NA	NA	NA	216.16	NA	103.3	NA	472.1826226	NA	426.8251484	M8	0.3	0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.515	70	0	0	NA	5qG2	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr5	101944090	101944090	T	C	ENSMUST00000053177.13	1	ENSMUSG00000043940	missense	K/R	461	Wdfy3	ENSMUST00000053177.13:c.1382A>G	ENSMUSP00000052607.7:p.Lys461Arg	H-2-Kb	9	5	7	LNYIPCREL	LNYIPCKEL	NetMHCpan	162.8	323.2	1.985	189	0.296	262.115	363.046	1.385	484.84	218.66	323.2	162.8	341.2793414	305.5694975	384.8132346	375.1889162	M8	-0.014285714	-0.014285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.292	189	39	5	0.128205128	5qE5	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr5	105813013	105813013	C	A	ENSMUST00000120847.7	1	ENSMUSG00000046079	missense	L/I	430	Lrrc8d	ENSMUST00000120847.7:c.1288C>A	ENSMUSP00000113603.1:p.Leu430Ile	H-2-Kb	9	10	2	QIYSKRFGV	QLYSKRFGV	SMM	203.287	693.601	3.412	125	0.256	333.589	1059.293	3.175	901.7	246.21	2620.5	1022.6	693.6014622	203.287184	1216.886295	420.9688878	M8	-0.557142857	-0.514285714	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.278	125	101	32	0.316831683	5qE5	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr5	29478259	29478259	T	A	ENSMUST00000165512.3	1	ENSMUSG00000001566	missense	N/I	6	Mnx1	ENSMUST00000165512.3:c.17A>T	ENSMUSP00000129503.2:p.Asn6Ile	H-2-Kb	9	5	2	KIFRIDALL	KNFRIDALL	NetMHC	294.87	154.93	0.525	64	0.312	482.133	349.528	0.725	154.93	294.87	223.6	334.6	475.4556362	629.6656471	486.6872848	649.007925	M8	1.242857143	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.304	64	0	0	NA	5qB1	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr5	16359028	16359028	T	C	ENSMUST00000039370.13	1	ENSMUSG00000040118	missense	V/A	903	Cacna2d1	ENSMUST00000039370.13:c.2708T>C	ENSMUSP00000049457.7:p.Val903Ala	H-2-Kb	9	4	8	KSYDYQSAC	KSYDYQSVC	NetMHCpan	276.2	497	1.799	100	0.23	416.065	787.162	1.892	922.32	305.81	497	276.2	924.9324152	656.3114787	652.0036095	526.3201534	M8	-0.871428571	-0.871428571	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.224	100	10	0	0	5qA3	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr5	105015021	105015021	GT	G	ENSMUST00000031235.12	5	ENSMUSG00000034438	FS	K/X	502	Gbp8	ENSMUST00000031235.12:c.1506del	ENSMUSP00000031235.6:p.Lys502AsnfsTer33	H-2-Kb	9	23	0	VASFIFSPI	NA	NetMHCpan	98.9	NA	NA	144	0.25	387.939	NA	NA	NA	383.91	NA	98.9	NA	443.7210173	NA	391.9674468	M8	1.628571429	2.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.244	144	0	0	NA	5qE5	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr5	57721359	57721359	T	C	ENSMUST00000191837.5	1	ENSMUSG00000029108	missense	L/S	752	Pcdh7	ENSMUST00000191837.5:c.2255T>C	ENSMUSP00000142319.1:p.Leu752Ser	H-2-Kb	9	7	5	ISYTSLPPS	ISYTLLPPS	SMM	151.743	109.172	0.719	284	0.218	424.609	273.635	0.644	451.89	632.75	392.3	624.7	109.1716816	151.7434661	154.9708446	224.5173978	M8	-0.428571429	0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.223	284	64	0	0	5qC1	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr5	31040436	31040436	T	C	ENSMUST00000114668.6	1	ENSMUSG00000006641	missense	I/V	310	Slc5a6	ENSMUST00000114668.6:c.928A>G	ENSMUSP00000110316.1:p.Ile310Val	H-2-Kb	9	11	1	VGLVMFAYY	IGLVMFAYY	SMM	176.242	259.484	1.472	81	0.247	453.049	578.617	1.277	846.6	671.54	1237.9	1273.8	259.483651	176.2422384	310.6347231	234.557865	M8	1.7	2.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.24	81	4	1	0.25	5qB1	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr6	71561046	71561046	T	A	ENSMUST00000059462.11	1	ENSMUSG00000053119	missense	S/T	86	Chmp3	ENSMUST00000059462.11:c.256T>A	ENSMUSP00000109815.3:p.Ser86Thr	H-2-Db	9	6	6	KAHMNTVLM	KAHMNSVLM	NetMHC	11.45	15.11	1.32	131	0.214	33.494	42.425	1.267	15.11	11.45	17.3	16.1	67.54916735	50.88854105	87.41178724	72.70595779	M8	0.628571429	0.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.215	131	291	50	0.171821306	6qC1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr6	57600007	57600007	T	C	ENSMUST00000031817.9	1	ENSMUSG00000029798	missense	L/P	235	Herc6	ENSMUST00000031817.9:c.704T>C	ENSMUSP00000031817.8:p.Leu235Pro	H-2-Db	9	6	6	GALKNPSVI	GALKNLSVI	NetMHC	13.46	7.99	0.594	188	0.149	47.099	27.26	0.579	7.99	13.46	16.8	37.5	48.2636319	70.24574131	37.71985373	56.6982951	M8	0.385714286	0.385714286	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.148	188	2	0	0	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.708298465	sgMsh2	cell line
chr6	42286884	42286884	TG	T	ENSMUST00000031894.12	1	ENSMUSG00000029862	FS	G/X	40	Clcn1	ENSMUST00000031894.12:c.122del	ENSMUSP00000031894.6:p.Gly41AlafsTer70	H-2-Db	9	65	0	TTILNVKTV	NA	NetMHCpan	370.5	NA	NA	94	0.17	457.664	NA	NA	NA	742.55	NA	370.5	NA	495.0168702	NA	420.3102682	M8	1.228571429	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.174	94	0	0	NA	6qB2.1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.832729276	sgMsh2	cell line
chr6	13193189	13193189	T	C	ENSMUST00000054530.6	1	ENSMUSG00000079679	missense	T/A	384	Vwde	ENSMUST00000054530.6:c.1150A>G	ENSMUSP00000058110.5:p.Thr384Ala	H-2-Kb	8	6	6	AVLYYAAV	AVLYYTAV	NetMHC	18.5	70.64	3.818	142	0.148	51.667	133.063	2.575	70.64	18.5	72.6	37	198.0341096	69.30107956	193.5263029	66.33458249	M8	1.885714286	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.163	142	0	0	NA	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.780085471	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	8	4	8	VLVSYTRL	VLVSYTRI	NetMHC	19.39	171.38	8.839	257	0.171	31.763	209.772	6.604	171.38	19.39	99.5	20.3	348.1288376	53.67103866	248.1646968	43.22549746	M8	0.642857143	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.186	257	0	0	NA	6qB2.1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.890158882	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	8	6	6	VSYTRLLV	VSYTRILV	NetMHCpan	35.2	39.9	1.134	257	0.171	94.957	84.621	0.891	32.04	39.69	39.9	35.2	129.3421274	150.2242346	135.1263357	158.7596015	M8	0.642857143	0.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.186	257	0	0	NA	6qB2.1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.890158882	sgMsh2	cell line
chr6	35270381	35270381	A	G	ENSMUST00000031868.4	1	ENSMUSG00000029843	missense	I/T	568	Slc13a4	ENSMUST00000031868.4:c.1703T>C	ENSMUSP00000031868.4:p.Ile568Thr	H-2-Kb	8	11	1	TVFSYGHC	IVFSYGHC	SMMPMBEC	126.398	45.787	0.362	197	0.157	145.752	48.403	0.332	38.66	171.24	51.8	148.7	51.01994663	142.8038776	45.7867692	126.3979412	M8	0.542857143	0.542857143	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.15	197	0	0	NA	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.717870066	sgMsh2	cell line
chr6	30815960	30815960	A	G	ENSMUST00000048774.12	1	ENSMUSG00000025607	missense	V/A	480	Copg2	ENSMUST00000048774.12:c.1439T>C	ENSMUSP00000038368.6:p.Val480Ala	H-2-Kb	8	6	6	FIFNRAVL	FIFNRVVL	SMM	138.912	401.55	2.891	164	0.098	159.887	404.813	2.532	524.31	178.28	359.2	181.6	401.5503419	138.9120754	408.0750101	141.4946437	M8	1.3	1.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.114	164	129	26	0.201550388	6qA3.3	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.54558125	sgMsh2	cell line
chr6	42286884	42286884	TG	T	ENSMUST00000031894.12	1	ENSMUSG00000029862	FS	G/X	40	Clcn1	ENSMUST00000031894.12:c.122del	ENSMUSP00000031894.6:p.Gly41AlafsTer70	H-2-Kb	8	28	0	TQHRYMAI	NA	NetMHC	259.42	NA	NA	94	0.17	338.138	NA	NA	NA	259.42	NA	273.8	NA	443.3431473	NA	402.476011	M8	-0.614285714	-0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.174	94	0	0	NA	6qB2.1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.832729276	sgMsh2	cell line
chr6	18405230	18405230	T	C	ENSMUST00000090601.11	1	ENSMUSG00000000416	missense	Y/C	1090	Cttnbp2	ENSMUST00000090601.11:c.3269A>G	ENSMUSP00000088089.5:p.Tyr1090Cys	H-2-Kb	8	7	5	SSVTCASM	SSVTYASM	NetMHC	276.55	6.31	0.023	409	0.156	362.299	24.523	0.068	6.31	276.55	15.8	475.5	35.70590129	399.7053856	33.24604589	324.8927349	M8	1.157142857	1.157142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.157	409	0	0	NA	6qA2	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.751370669	sgMsh2	cell line
chr6	69283934	69283934	TA	T	ENSMUST00000103349.1	NA	ENSMUSG00000076548	FS	Y/X	70	Igkv4-69	ENSMUST00000103349.1:c.208del	ENSMUSP00000100150.1:p.Tyr70MetfsTer26	H-2-Kb	8	25	0	VAVGLGPL	NA	NetMHC	277.12	NA	NA	699	0.166	319.498	NA	NA	NA	277.12	NA	307.3	NA	344.9371732	NA	331.6958211	M8	1.6	1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.166	699	0	0	NA	6qC1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.794442873	sgMsh2	cell line
chr6	56753863	56753863	CA	C	ENSMUST00000031805.10	1	ENSMUSG00000029787	FS	K/X	591	Avl9	ENSMUST00000031805.10:c.1777del	ENSMUSP00000031805.8:p.Ile593LeufsTer72	H-2-Kb	8	59	0	RVFLSHPM	NA	NetMHCpan	148.9	NA	NA	136	0.096	437.401	NA	NA	NA	454.09	NA	148.9	NA	426.324214	NA	448.476819	M8	1.014285714	1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2	2	0.108	136	152	15	0.098684211	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.516866447	sgMsh2	cell line
chr6	72515320	72515320	A	G	ENSMUST00000162561.8	1	ENSMUSG00000052631	missense	V/A	181	Sh2d6	ENSMUST00000162561.8:c.542T>C	ENSMUSP00000124673.2:p.Val181Ala	H-2-Kb	8	5	7	QPFTLAAL	QPFTLAVL	SMM	136.691	321.914	2.355	94	0.223	392.013	1659.23	4.233	2868.95	584.16	4165.5	2841.1	321.9141004	136.691025	449.5106648	199.8664966	M8	1.671428571	1.671428571	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.233	94	0	0	NA	6qC1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr6	38395159	38395159	A	G	ENSMUST00000162554.7	1	ENSMUSG00000056832	missense	N/S	228	Ttc26	ENSMUST00000162554.7:c.683A>G	ENSMUSP00000124369.1:p.Asn228Ser	H-2-Kb	8	8	4	KACSHFRL	KACNHFRL	SMMPMBEC	238.089	262.869	1.104	263	0.167	424.535	436.945	1.029	611.02	603.18	792.8	636.8	253.9451951	245.8895091	262.8693795	238.0893668	M8	0.342857143	0.342857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.163	263	11	3	0.272727273	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.780085471	sgMsh2	cell line
chr6	30815960	30815960	A	G	ENSMUST00000048774.12	1	ENSMUSG00000025607	missense	V/A	480	Copg2	ENSMUST00000048774.12:c.1439T>C	ENSMUSP00000038368.6:p.Val480Ala	H-2-Kb	8	4	8	IRFIFNRA	IRFIFNRV	SMMPMBEC	232.135	48.277	0.208	164	0.098	482.306	47.673	0.099	40.71	683.59	149.1	1240.7	47.06954498	281.0217928	48.27696948	232.1346655	M8	-0.085714286	0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.114	164	129	26	0.201550388	6qA3.3	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.54558125	sgMsh2	cell line
chr6	13193189	13193189	T	C	ENSMUST00000054530.6	1	ENSMUSG00000079679	missense	T/A	384	Vwde	ENSMUST00000054530.6:c.1150A>G	ENSMUSP00000058110.5:p.Thr384Ala	H-2-Kb	9	5	7	QAVLYYAAV	QAVLYYTAV	NetMHC	15.98	41.44	2.593	142	0.148	75.31	108.396	1.439	41.44	15.98	80.3	48.5	136.4928808	102.1198104	174.2809827	128.0117987	M8	1.885714286	1.885714286	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.163	142	0	0	NA	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.780085471	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	9	3	9	LVLVSYTRL	LVLVSYTRI	NetMHC	46.33	202.94	4.38	257	0.171	99.281	285.444	2.875	202.94	46.33	207.6	48.9	371.6293451	149.6614677	363.2871195	157.1267038	M8	0.642857143	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.186	257	0	0	NA	6qB2.1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.890158882	sgMsh2	cell line
chr6	41394716	41394716	A	G	ENSMUST00000049079.8	1	ENSMUSG00000058119	missense	N/S	32	Gm5771	ENSMUST00000049079.8:c.95A>G	ENSMUSP00000039684.7:p.Asn32Ser	H-2-Kb	9	11	1	SSVPYQVSL	NSVPYQVSL	NetMHCpan	55	427.2	7.767	577	0.172	192.657	1089.876	5.657	863.77	57.03	427.2	55	1486.312054	344.4371603	1315.982154	328.2842143	M8	0.714285714	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.17	577	0	0	NA	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.813586075	sgMsh2	cell line
chr6	56753863	56753863	CA	C	ENSMUST00000031805.10	1	ENSMUSG00000029787	FS	K/X	591	Avl9	ENSMUST00000031805.10:c.1777del	ENSMUSP00000031805.8:p.Ile593LeufsTer72	H-2-Kb	9	15	0	VSWSQPAGM	NA	NetMHC	162.72	NA	NA	136	0.096	210.1	NA	NA	NA	162.72	NA	194.2	NA	226.0008122	NA	332.8511027	M8	-0.5	-0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2	2	0.108	136	152	15	0.098684211	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.516866447	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	9	4	8	VLVSYTRLL	VLVSYTRIL	NetMHCpan	118.1	254.3	2.153	257	0.171	338.726	712.479	2.103	683.46	204.18	254.3	118.1	741.4980274	473.271116	959.9530659	622.6586131	M8	0.642857143	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.186	257	0	0	NA	6qB2.1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.890158882	sgMsh2	cell line
chr6	57258876	57258876	T	C	ENSMUST00000228297.1	NA	ENSMUSG00000115199	missense	V/A	243	Vmn1r15	ENSMUST00000228297.1:c.728T>C	ENSMUSP00000154252.1:p.Val243Ala	H-2-Kb	9	5	7	FVVMYWADF	FVVMYWVDF	NetMHC	306.14	761.72	2.488	366	0.156	379.005	706.007	1.863	761.72	306.14	3331.3	836.6	650.2943789	450.9309038	416.1500968	307.0789168	M8	0.714285714	1.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.147	366	0	0	NA	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.703512664	sgMsh2	cell line
chr6	56753863	56753863	CA	C	ENSMUST00000031805.10	1	ENSMUSG00000029787	FS	K/X	591	Avl9	ENSMUST00000031805.10:c.1777del	ENSMUSP00000031805.8:p.Ile593LeufsTer72	H-2-Kb	9	23	0	MWYKQEKPL	NA	SMM	105.465	NA	NA	136	0.096	251.939	NA	NA	NA	309.23	NA	916.8	NA	105.465399	NA	194.6480243	M8	-1.985714286	-1.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2	2	0.108	136	152	15	0.098684211	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.516866447	sgMsh2	cell line
chr5	147315169	147315169	T	C	ENSMUST00000100433.4	1	ENSMUSG00000075543	missense	S/G	158	Urad	ENSMUST00000100433.4:c.472A>G	ENSMUSP00000098000.3:p.Ser158Gly	H-2-Kb	9	10	2	IGHLRLTDL	ISHLRLTDL	NetMHC	322.75	98.24	0.304	95	0.274	388.562	137.299	0.353	98.24	322.75	151.5	451.1	159.261206	457.2039776	123.0977174	326.0243217	M8	-0.071428571	0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.276	95	0	0	NA	5qG3	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr6	42286884	42286884	TG	T	ENSMUST00000031894.12	1	ENSMUSG00000029862	FS	G/X	40	Clcn1	ENSMUST00000031894.12:c.122del	ENSMUSP00000031894.6:p.Gly41AlafsTer70	H-2-Kb	9	60	0	TAWMRTTIL	NA	NetMHCpan	157.5	NA	NA	94	0.17	221.615	NA	NA	NA	328.86	NA	157.5	NA	251.2522734	NA	191.9773533	M8	0.485714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.174	94	0	0	NA	6qB2.1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.832729276	sgMsh2	cell line
chr6	57258876	57258876	T	C	ENSMUST00000228297.1	NA	ENSMUSG00000115199	missense	V/A	243	Vmn1r15	ENSMUST00000228297.1:c.728T>C	ENSMUSP00000154252.1:p.Val243Ala	H-2-Kb	9	7	5	VMYWADFII	VMYWVDFII	SMM	154.565	218.328	1.413	366	0.156	312.379	430.03	1.377	602.28	395.01	1029	537.3	218.3282833	154.5645878	257.7804634	229.7470798	M8	1.128571429	1.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.147	366	0	0	NA	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.703512664	sgMsh2	cell line
chr6	42927884	42927884	A	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	missense	I/L	218	Olfr446	ENSMUST00000215369.1:c.652A>C	ENSMUSP00000149013.1:p.Ile218Leu	H-2-Kb	9	6	6	VSYTRLLVA	VSYTRILVA	NetMHCpan	129.9	163.6	1.259	257	0.171	176.155	270.535	1.536	712.71	415.25	163.6	129.9	323.6756285	203.287184	217.3952246	149.021867	M8	1.014285714	1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.186	257	0	0	NA	6qB2.1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.890158882	sgMsh2	cell line
chr7	18680927	18680927	G	T	ENSMUST00000076677.3	5	ENSMUSG00000063305	missense	L/M	348	Psg20	ENSMUST00000076677.3:c.1042C>A	ENSMUSP00000075973.3:p.Leu348Met	H-2-Db	9	3	9	TGYTNGSLM	TGYTNGSLL	NetMHC	92.93	152.55	1.642	372	0.215	221.381	267.482	1.208	152.55	92.93	208.7	192.4	408.9027205	288.150913	326.2646338	250.3629153	M8	-0.142857143	-0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.217	372	0	0	NA	7qA3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr6	107567567	107567567	A	G	ENSMUST00000049285.9	1	ENSMUSG00000034648	missense	N/D	109	Lrrn1	ENSMUST00000049285.9:c.325A>G	ENSMUSP00000037096.8:p.Asn109Asp	H-2-Db	9	4	8	FSQNNFTDI	FSQNNFTNI	NetMHC	98.08	74.23	0.757	240	0.2	115.299	90.521	0.785	74.23	98.08	73.3	114.3	106.8119884	136.3389673	112.3492041	116.2973985	M8	-1.057142857	-0.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.191	240	2	0	0	6qE1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.914087884	sgMsh2	cell line
chr7	26611187	26611187	T	C	ENSMUST00000228367.1	NA	ENSMUSG00000091924	missense	M/V	298	Vmn1r185	ENSMUST00000228367.1:c.892A>G	ENSMUSP00000154816.1:p.Met298Val	H-2-Db	9	8	4	YSLVSRFNL	YSLMSRFNL	NetMHC	136.82	215.91	1.578	214	0.224	299.155	452.516	1.513	215.91	136.82	303	280.9	602.0325877	317.4095578	657.007005	372.8807814	M8	0.828571429	0.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.216	214	0	0	NA	7qA3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	25272796	25272796	A	G	ENSMUST00000169266.7	1	ENSMUSG00000005442	missense	I/V	651	Cic	ENSMUST00000169266.7:c.1951A>G	ENSMUSP00000132351.1:p.Ile651Val	H-2-Db	10	2	10	FSPINASPVV	FSPINASPVI	NetMHC	14.9	8.41	0.564	63	0.286	465.206	229.143	0.493	8.41	14.9	34.4	92.4	423.8869047	838.0115415	542.8376978	1013.141255	M8	1.257142857	1.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.262	63	40	6	0.15	7qA3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	19643130	19643130	A	C	ENSMUST00000055242.10	1	ENSMUSG00000002981	missense	F/V	170	Clptm1	ENSMUST00000055242.10:c.508T>G	ENSMUSP00000051293.9:p.Phe170Val	H-2-Kb	8	4	8	SIYIHVYV	SIYIHVYF	NetMHC	15.47	62.57	4.045	155	0.194	41.881	121.629	2.904	62.57	15.47	80.8	57.4	162.4575876	35.70590129	166.6249377	48.05515695	M8	1.657142857	1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.197	155	188	31	0.164893617	7qA3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.942802686	sgMsh2	cell line
chr6	134451069	134451069	T	C	ENSMUST00000032322.14	1	ENSMUSG00000030201	missense	Y/C	1520	Lrp6	ENSMUST00000032322.14:c.4559A>G	ENSMUSP00000032322.8:p.Tyr1520Cys	H-2-Kb	8	4	8	RSYSYRPC	RSYSYRPY	NetMHC	22.95	107.06	4.665	112	0.071	38.31	109.727	2.864	107.06	22.95	418.8	63.3	112.3931906	35.05419514	72.90209351	41.56616909	M8	-1.114285714	-1.114285714	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.083	112	120	10	0.083333333	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.397221436	sgMsh2	cell line
chr7	28320255	28320255	A	G	ENSMUST00000209141.1	1	ENSMUSG00000003435	missense	F/L	497	Supt5	ENSMUST00000209141.1:c.1489T>C	ENSMUSP00000147164.1:p.Phe497Leu	H-2-Kb	8	11	1	LVILFSDL	FVILFSDL	NetMHCpan	33.8	63.7	1.885	175	0.257	68.106	75.272	1.105	40.58	34.18	63.7	33.8	93.70008827	130.2386842	86.84403626	102.0328459	M8	2.114285714	2.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.259	175	175	42	0.24	7qA3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	6461136	6461136	T	C	ENSMUST00000214301.2	5	ENSMUSG00000048620	missense	V/A	209	Olfr1336	ENSMUST00000214301.2:c.626T>C	ENSMUSP00000150162.1:p.Val209Ala	H-2-Kb	8	10	2	IAILWGSL	IVILWGSL	NetMHCpan	26.7	38.1	1.427	383	0.235	48.129	52.985	1.101	49.64	35.34	38.1	26.7	82.36448742	81.04757034	56.33003227	60.91720937	M8	1.685714286	1.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.233	383	0	0	NA	7qA1	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr6	141532679	141532679	A	G	ENSMUST00000032362.11	1	ENSMUSG00000030235	missense	K/R	56	Slco1c1	ENSMUST00000032362.11:c.167A>G	ENSMUSP00000032362.9:p.Lys56Arg	H-2-Kb	8	4	8	LSFVYFAR	LSFVYFAK	NetMHC	71.6	273.33	3.817	188	0.138	97.337	165.283	1.698	273.33	71.6	241.7	126.8	88.86689373	86.84403626	56.4598864	107.830098	M8	0.714285714	1.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.134	188	0	0	NA	6qG2	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.641297259	sgMsh2	cell line
chr6	114302629	114302629	A	G	ENSMUST00000032454.7	1	ENSMUSG00000030310	missense	K/R	123	Slc6a1	ENSMUST00000032454.7:c.368A>G	ENSMUSP00000032454.5:p.Lys123Arg	H-2-Kb	8	6	6	LAPMFRGV	LAPMFKGV	NetMHC	85.05	307.58	3.616	208	0.163	326.028	633.35	1.943	307.58	85.05	408.2	184.6	1126.522836	545.4312289	858.499408	467.4552051	M8	0.6	0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.176	208	0	0	NA	6qE3	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.842300877	sgMsh2	cell line
chr7	12305079	12305079	CG	C	ENSMUST00000072801.4	NA	ENSMUSG00000058132	FS	R/X	92	Vmn1r82	ENSMUST00000072801.4:c.280del	ENSMUSP00000072580.3:p.Val94PhefsTer9	H-2-Kb	8	9	5	VSRGFHYI	VSRGVSLY	NetMHCpan	78.6	15100.7	192.121	236	0.292	97.996	15009.855	153.168	22427.51	95.59	15100.7	78.6	14919.00983	100.4014535	12126.62646	110.3417837	M8	-0.414285714	-0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.289	236	0	0	NA	7qA1	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr6	141532679	141532679	A	G	ENSMUST00000032362.11	1	ENSMUSG00000030235	missense	K/R	56	Slco1c1	ENSMUST00000032362.11:c.167A>G	ENSMUSP00000032362.9:p.Lys56Arg	H-2-Kb	8	5	7	SFVYFARA	SFVYFAKA	NetMHC	104.42	421.4	4.036	188	0.138	172.62	538.576	3.12	421.4	104.42	215.7	105.5	804.8964279	281.6696149	655.752568	239.7397234	M8	1.085714286	1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.134	188	0	0	NA	6qG2	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.641297259	sgMsh2	cell line
chr6	141532679	141532679	A	G	ENSMUST00000032362.11	1	ENSMUSG00000030235	missense	K/R	56	Slco1c1	ENSMUST00000032362.11:c.167A>G	ENSMUSP00000032362.9:p.Lys56Arg	H-2-Kb	8	6	6	FVYFARAL	FVYFAKAL	NetMHCpan	53.9	100.9	1.872	188	0.138	100.957	211.274	2.093	281	106.91	100.9	53.9	196.218522	95.00358634	226.3288934	123.2366829	M8	1.228571429	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.134	188	0	0	NA	6qG2	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.641297259	sgMsh2	cell line
chr6	124908510	124908510	CG	C	ENSMUST00000032217.1	1	ENSMUSG00000030124	FS	P/X	302	Lag3	ENSMUST00000032217.1:c.906del	ENSMUSP00000032217.1:p.Val303TrpfsTer45	H-2-Kb	8	16	0	VAILPFTL	NA	NetMHC	108.05	NA	NA	130	0.192	209.178	NA	NA	NA	108.05	NA	108.8	NA	309.5565516	NA	376.4783444	M8	2.057142857	2.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.205	130	1	0	0	6qF2	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.98108909	sgMsh2	cell line
chr7	4469203	4469203	GA	G	ENSMUST00000163893.7	1	ENSMUSG00000006154	FS	R/X	22	Eps8l1	ENSMUST00000163893.7:c.69del	ENSMUSP00000125840.1:p.Lys23AsnfsTer56	H-2-Kb	8	6	7	SIYEQRNV	SIYEQRKR	SMM	80.305	2021.808	25.177	214	0.248	140.518	10629.403	75.645	16431.11	121.91	19443.2	292.4	2021.808416	80.30452175	4827.696948	159.1255801	M8	-1.085714286	-1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.249	214	0	0	NA	7qA1	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr6	134451076	134451076	T	C	ENSMUST00000032322.14	1	ENSMUSG00000030201	missense	R/G	1518	Lrp6	ENSMUST00000032322.14:c.4552A>G	ENSMUSP00000032322.8:p.Arg1518Gly	H-2-Kb	8	6	6	RSYSYGPY	RSYSYRPY	SMMPMBEC	72.902	72.902	1	106	0.075	122.156	109.727	0.898	107.06	123.88	418.8	436.7	112.3931906	120.4314735	72.90209351	72.90209351	M8	-1.071428571	-1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.089	106	124	10	0.080645161	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.425936239	sgMsh2	cell line
chr6	134451069	134451069	T	C	ENSMUST00000032322.14	1	ENSMUSG00000030201	missense	Y/C	1520	Lrp6	ENSMUST00000032322.14:c.4559A>G	ENSMUSP00000032322.8:p.Tyr1520Cys	H-2-Kb	8	11	1	CSYRHFAP	YSYRHFAP	NetMHC	134.9	77.72	0.576	112	0.071	195.012	134.543	0.69	77.72	134.9	80.4	161.6	188.68614	228.4230889	247.5939338	382.5956254	M8	-0.971428571	-0.385714286	TRUE	FALSE	TRUE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.083	112	120	10	0.083333333	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.397221436	sgMsh2	cell line
chr6	116702006	116702006	GC	G	ENSMUST00000056623.12	1	ENSMUSG00000048108	FS	G/X	36	Tmem72	ENSMUST00000056623.12:c.108del	ENSMUSP00000057942.6:p.Arg37GlyfsTer77	H-2-Kb	8	80	0	STLSWSGM	NA	NetMHC	165.56	NA	NA	102	0.118	251.323	NA	NA	NA	165.56	NA	224.2	NA	308.8445912	NA	278.4453695	M8	0.3	0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.117	102	0	0	NA	6qE3	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.559938651	sgMsh2	cell line
chr7	6060603	6060603	CT	C	ENSMUST00000037728.12	1	ENSMUSG00000034690	FS	S/X	3	Nlrp4c	ENSMUST00000037728.12:c.16del	ENSMUSP00000046503.5:p.Ser6LeufsTer9	H-2-Kb	8	3	4	SFFLILAL	SFFSDFGL	SMM	135.438	160.968	1.189	197	0.157	183.537	318.439	1.735	494.24	221.95	462.4	223.8	160.9681675	135.4378341	174.4777291	145.1242539	M8	3.328571429	3.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1574	197	0	0	NA	7qA1	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.753284989	sgMsh2	cell line
chr7	26611187	26611187	T	C	ENSMUST00000228367.1	NA	ENSMUSG00000091924	missense	M/V	298	Vmn1r185	ENSMUST00000228367.1:c.892A>G	ENSMUSP00000154816.1:p.Met298Val	H-2-Kb	8	4	8	FMRSYSLV	FMRSYSLM	NetMHC	238.94	166.52	0.697	214	0.224	450.026	344.108	0.765	166.52	238.94	202.1	466.8	486.1160944	433.2514252	558.1359543	516.1072977	M8	0.357142857	0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.216	214	0	0	NA	7qA3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr6	123815817	123815817	T	C	ENSMUST00000075095.6	5	ENSMUSG00000072780	missense	M/T	701	Vmn2r24	ENSMUST00000075095.6:c.2102T>C	ENSMUSP00000074602.5:p.Met701Thr	H-2-Kb	8	6	6	QMWMVTRL	QMWMVMRL	NetMHC	249.67	165.69	0.664	760	0.171	456.149	439.641	0.964	165.69	249.67	358.4	310.1	520.8827797	666.4076901	533.0156983	602.1989584	M8	0.814285714	0.814285714	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.166	760	0	0	NA	6qF2	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.794442873	sgMsh2	cell line
chr6	125980155	125980155	A	G	ENSMUST00000160496.7	1	ENSMUSG00000038115	missense	K/R	629	Ano2	ENSMUST00000160496.7:c.1886A>G	ENSMUSP00000125303.1:p.Lys629Arg	H-2-Kb	8	6	6	KAFLLRFV	KAFLLKFV	NetMHCpan	272.4	547.6	2.01	372	0.124	351.17	682.716	1.944	1229.78	480.77	547.6	272.4	681.9303192	330.1718172	683.502331	372.1688324	M8	2.1	2.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.13	372	0	0	NA	6qF3	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.622154057	sgMsh2	cell line
chr7	13028552	13028552	C	A	ENSMUST00000005705.7	1	ENSMUSG00000005566	missense	L/M	368	Trim28	ENSMUST00000005705.7:c.1102C>A	ENSMUSP00000005705.7:p.Leu368Met	H-2-Kb	8	9	3	KKMIYFQL	KKLIYFQL	SMMPMBEC	242.516	183.967	0.759	127	0.228	424.719	506.319	1.192	828.67	832.15	1033.4	533.4	183.9670312	316.0385059	183.9670312	242.5157786	M8	0.614285714	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.229	127	529	116	0.219281664	7qA1	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr6	138012108	138012108	T	C	ENSMUST00000171804.3	5	ENSMUSG00000044378	missense	M/V	471	Slc15a5	ENSMUST00000171804.3:c.1411A>G	ENSMUSP00000129239.1:p.Met471Val	H-2-Kb	8	11	1	VLIKLLYL	MLIKLLYL	NetMHCpan	299.3	988.8	3.304	157	0.083	448.284	990.661	2.21	3059.52	851.35	988.8	299.3	992.5216755	465.3074435	913.5661511	431.2608157	M8	2.071428571	2.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.077	157	0	0	NA	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.368506634	sgMsh2	cell line
chr6	124908510	124908510	CG	C	ENSMUST00000032217.1	1	ENSMUSG00000030124	FS	P/X	302	Lag3	ENSMUST00000032217.1:c.906del	ENSMUSP00000032217.1:p.Val303TrpfsTer45	H-2-Kb	8	24	0	RLWVWHRL	NA	SMMPMBEC	207.367	NA	NA	130	0.192	336.204	NA	NA	NA	1111.14	NA	304.5	NA	367.908651	NA	207.3671696	M8	0.328571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.205	130	1	0	0	6qF2	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.98108909	sgMsh2	cell line
chr6	141532679	141532679	A	G	ENSMUST00000032362.11	1	ENSMUSG00000030235	missense	K/R	56	Slco1c1	ENSMUST00000032362.11:c.167A>G	ENSMUSP00000032362.9:p.Lys56Arg	H-2-Kb	9	4	8	LSFVYFARA	LSFVYFAKA	NetMHC	8.07	18.23	2.259	188	0.138	41.355	63.038	1.524	18.23	8.07	19.6	12.2	162.2220929	88.94263671	106.4755765	70.50988397	M8	1.085714286	1.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.134	188	0	0	NA	6qG2	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.641297259	sgMsh2	cell line
chr7	26611187	26611187	T	C	ENSMUST00000228367.1	NA	ENSMUSG00000091924	missense	M/V	298	Vmn1r185	ENSMUST00000228367.1:c.892A>G	ENSMUSP00000154816.1:p.Met298Val	H-2-Kb	9	11	1	VSRFNLAHL	MSRFNLAHL	NetMHC	34.25	88.62	2.587	214	0.224	91.603	217.283	2.372	88.62	34.25	130.4	64.6	304.1655332	118.6069123	327.5291816	126.5464598	M8	0.142857143	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.216	214	0	0	NA	7qA3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr6	134520435	134520435	A	C	ENSMUST00000032322.14	1	ENSMUSG00000030201	missense	L/R	203	Lrp6	ENSMUST00000032322.14:c.608T>G	ENSMUSP00000032322.8:p.Leu203Arg	H-2-Kb	9	11	1	RNFIHKSNL	LNFIHKSNL	NetMHCpan	24.8	15.1	0.609	232	0.095	96.035	60.832	0.633	39.77	43.78	15.1	24.8	87.5205423	148.2893631	81.893607	152.4930322	M8	-0.042857143	-0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.105	232	171	21	0.122807018	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.502509046	sgMsh2	cell line
chr7	25630422	25630422	G	T	ENSMUST00000205808.1	5	ENSMUSG00000060376	missense	P/H	92	Bckdha	ENSMUST00000205808.1:c.275C>A	ENSMUSP00000146018.1:p.Pro92His	H-2-Kb	9	10	5	RSWKHLSRL	RSWKPLSRL	NetMHCpan	40.3	284.5	7.06	43	0.326	90.509	379.431	4.192	202.73	43.85	284.5	40.3	474.3621186	146.9298381	571.8077009	137.1671136	M8	-0.814285714	-0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.349	43	146	31	0.212328767	7qA3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	6461136	6461136	T	C	ENSMUST00000214301.2	5	ENSMUSG00000048620	missense	V/A	209	Olfr1336	ENSMUST00000214301.2:c.626T>C	ENSMUSP00000150162.1:p.Val209Ala	H-2-Kb	9	10	2	IAILWGSLL	IVILWGSLL	NetMHC	79.58	110.35	1.387	383	0.235	134.3	179.951	1.34	110.35	79.58	151.4	83.2	208.5018919	185.4001153	225.0349638	194.6480243	M8	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.233	383	0	0	NA	7qA1	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	26611187	26611187	T	C	ENSMUST00000228367.1	NA	ENSMUSG00000091924	missense	M/V	298	Vmn1r185	ENSMUST00000228367.1:c.892A>G	ENSMUSP00000154816.1:p.Met298Val	H-2-Kb	9	3	9	VFMRSYSLV	VFMRSYSLM	NetMHC	86.79	66.95	0.771	214	0.224	195.423	101.978	0.522	66.95	86.79	103.7	265	100.2559138	171.4391481	132.8158787	219.4067579	M8	0.357142857	0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.216	214	0	0	NA	7qA3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr6	124908510	124908510	CG	C	ENSMUST00000032217.1	1	ENSMUSG00000030124	FS	P/X	302	Lag3	ENSMUST00000032217.1:c.906del	ENSMUSP00000032217.1:p.Val303TrpfsTer45	H-2-Kb	9	17	0	AILPFTLRL	NA	NetMHCpan	45.3	NA	NA	130	0.192	185.425	NA	NA	NA	88.29	NA	45.3	NA	282.5595563	NA	326.7758854	M8	1.057142857	2.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.205	130	1	0	0	6qF2	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.98108909	sgMsh2	cell line
chr6	141532679	141532679	A	G	ENSMUST00000032362.11	1	ENSMUSG00000030235	missense	K/R	56	Slco1c1	ENSMUST00000032362.11:c.167A>G	ENSMUSP00000032362.9:p.Lys56Arg	H-2-Kb	9	5	7	SFVYFARAL	SFVYFAKAL	NetMHC	90.76	210.98	2.325	188	0.138	303.576	377.92	1.245	210.98	90.76	211.2	119.5	544.6405843	487.6519891	802.1396792	782.0778752	M8	1.228571429	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.134	188	0	0	NA	6qG2	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.641297259	sgMsh2	cell line
chr6	134451069	134451069	T	C	ENSMUST00000032322.14	1	ENSMUSG00000030201	missense	Y/C	1520	Lrp6	ENSMUST00000032322.14:c.4559A>G	ENSMUSP00000032322.8:p.Tyr1520Cys	H-2-Kb	9	11	1	CSYRHFAPP	YSYRHFAPP	SMM	43.965	47.985	1.091	112	0.071	101.949	75.581	0.741	74.91	111.8	101.8	153.6	47.9854973	43.96529586	76.25178243	92.09795777	M8	-1.085714286	-0.385714286	TRUE	FALSE	TRUE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.083	112	120	10	0.083333333	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.397221436	sgMsh2	cell line
chr7	26611187	26611187	T	C	ENSMUST00000228367.1	NA	ENSMUSG00000091924	missense	M/V	298	Vmn1r185	ENSMUST00000228367.1:c.892A>G	ENSMUSP00000154816.1:p.Met298Val	H-2-Kb	9	6	6	RSYSLVSRF	RSYSLMSRF	NetMHCpan	141.6	108.4	0.766	214	0.224	189.696	134.173	0.707	111.27	145.45	108.4	141.6	157.0760603	233.9429705	198.2668013	302.8656361	M8	0.485714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.216	214	0	0	NA	7qA3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	6060603	6060603	CT	C	ENSMUST00000037728.12	1	ENSMUSG00000034690	FS	S/X	3	Nlrp4c	ENSMUST00000037728.12:c.16del	ENSMUSP00000046503.5:p.Ser6LeufsTer9	H-2-Kb	9	2	5	ASFFLILAL	ASFFSDFGL	NetMHCpan	78.3	395.6	5.052	197	0.157	198.358	362.658	1.828	371.93	201.17	395.6	78.3	334.2796971	224.9624328	353.3865369	195.5464788	M8	3.328571429	3.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1574	197	0	0	NA	7qA1	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.753284989	sgMsh2	cell line
chr6	108399280	108399280	C	T	ENSMUST00000032192.8	1	ENSMUSG00000030102	missense	R/W	1235	Itpr1	ENSMUST00000032192.8:c.3703C>T	ENSMUSP00000032192.6:p.Arg1235Trp	H-2-Kb	9	9	3	IMWLAHEFL	IMRLAHEFL	NetMHCpan	173.3	364.8	2.105	170	0.129	275.443	622.207	2.259	738.74	227.21	364.8	173.3	566.3827268	323.6756285	678.0317017	326.7758854	M8	0.657142857	0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.136	170	38	3	0.078947368	6qE1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.65086886	sgMsh2	cell line
chr6	108380923	108380923	A	T	ENSMUST00000032192.8	1	ENSMUSG00000030102	missense	K/M	521	Itpr1	ENSMUST00000032192.8:c.1562A>T	ENSMUSP00000032192.6:p.Lys521Met	H-2-Kb	9	9	3	IFMLLQAPF	IFKLLQAPF	NetMHC	243.96	1098.72	4.504	158	0.209	381.453	1088.97	2.855	1098.72	243.96	1897.8	649.4	1079.220037	368.2222268	940.2644145	394.6844353	M8	1.285714286	2.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.214	158	38	1	0.026315789	6qE1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr6	138012108	138012108	T	C	ENSMUST00000171804.3	5	ENSMUSG00000044378	missense	M/V	471	Slc15a5	ENSMUST00000171804.3:c.1411A>G	ENSMUSP00000129239.1:p.Met471Val	H-2-Kb	9	10	2	AVLIKLLYL	AMLIKLLYL	NetMHC	295.04	180.53	0.612	157	0.083	309.178	165.465	0.535	180.53	295.04	481.5	592	144.2480663	312.6871254	150.4007493	305.6680173	M8	2.071428571	2.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.077	157	0	0	NA	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.368506634	sgMsh2	cell line
chr6	134484391	134484391	T	G	ENSMUST00000032322.14	1	ENSMUSG00000030201	missense	E/A	701	Lrp6	ENSMUST00000032322.14:c.2102A>C	ENSMUSP00000032322.8:p.Glu701Ala	H-2-Kb	9	4	8	SALEHVVAF	SALEHVVEF	NetMHC	346.5	552.55	1.595	270	0.144	444.167	549.223	1.237	552.55	346.5	572.2	399.4	545.8961105	515.3591605	539.8212792	488.9337312	M8	1.442857143	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.156	270	176	27	0.153409091	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.746584868	sgMsh2	cell line
chr6	123815817	123815817	T	C	ENSMUST00000075095.6	5	ENSMUSG00000072780	missense	M/T	701	Vmn2r24	ENSMUST00000075095.6:c.2102T>C	ENSMUSP00000074602.5:p.Met701Thr	H-2-Kb	9	8	4	WMVTRLSNV	WMVMRLSNV	SMMPMBEC	371.749	308.496	0.83	760	0.171	393.346	326.071	0.829	273.51	374.49	1055.2	1159.9	343.6449768	412.2019102	308.4963287	371.7491635	M8	0.385714286	0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.166	760	0	0	NA	6qF2	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.794442873	sgMsh2	cell line
chr6	113578387	113578387	T	A	ENSMUST00000036340.11	1	ENSMUSG00000034023	missense	F/Y	1119	Fancd2	ENSMUST00000036340.11:c.3356T>A	ENSMUSP00000045667.5:p.Phe1119Tyr	H-2-Kb	9	3	9	QSFSYLQNY	QSFSYLQNF	SMM	108.67	62.389	0.574	340	0.197	297.381	61.045	0.205	32.08	374.85	59.7	1857.1	62.38928378	108.6700833	111.2371876	219.9125427	M8	-0.542857143	-0.471428571	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.188	340	7	0	0	6qE3	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.899730482	sgMsh2	cell line
chr6	125626311	125626311	T	C	ENSMUST00000112254.7	1	ENSMUSG00000001930	missense	Y/H	875	Vwf	ENSMUST00000112254.7:c.2623T>C	ENSMUSP00000107873.2:p.Tyr875His	H-2-Kb	9	6	6	IGMAHHLTF	IGMAHYLTF	NetMHCpan	161.7	47.4	0.293	119	0.185	471.923	149.13	0.316	143.29	449.25	47.4	161.7	187.1156015	654.8020042	154.9708446	494.595317	M8	0.457142857	0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.181	119	0	0	NA	6qF3	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.866229879	sgMsh2	cell line
chr7	81101095	81101095	T	C	ENSMUST00000107348.1	1	ENSMUSG00000038763	missense	W/R	1538	Alpk3	ENSMUST00000107348.1:c.4612T>C	ENSMUSP00000102971.1:p.Trp1538Arg	H-2-Db	9	9	3	YQRTNGSFL	YQWTNGSFL	NetMHCpan	123.2	26.5	0.215	95	0.316	312.704	56.356	0.18	8.22	131.53	26.5	123.2	91.33137583	493.878363	86.21245256	572.2291797	M8	-0.471428571	-0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.296	95	0	0	NA	7qD3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	103716732	103716732	T	C	ENSMUST00000215723.1	5	ENSMUSG00000094822	missense	L/P	46	Olfr243	ENSMUST00000215723.1:c.137T>C	ENSMUSP00000150329.1:p.Leu46Pro	H-2-Db	9	4	8	IALLGNSPL	IALLGNSLL	SMMPMBEC	407.915	1353.848	3.319	381	0.218	440.737	2105.688	4.778	4762.52	745.91	2832.2	453.3	1379.176981	428.173712	1353.848288	407.9153047	M8	0.728571429	1.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.217	381	0	0	NA	7qE3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	56729649	56729649	G	A	ENSMUST00000068911.12	1	ENSMUSG00000055026	missense	A/V	335	Gabrg3	ENSMUST00000068911.12:c.1004C>T	ENSMUSP00000067632.6:p.Ala335Val	H-2-Db	9	5	7	AALMEYVTL	AALMEYATL	NetMHCpan	283.9	270.3	0.952	146	0.151	427.473	344.761	0.807	972.38	905.9	270.3	283.9	407.9622703	519.5412082	281.5593799	335.4053611	M8	1.171428571	1.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.174	146	0	0	NA	7qB5	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.832729276	sgMsh2	cell line
chr7	66784798	66784798	T	C	ENSMUST00000066475.10	1	ENSMUSG00000030510	missense	W/R	216	Cers3	ENSMUST00000066475.10:c.646T>C	ENSMUSP00000069238.8:p.Trp216Arg	H-2-Kb	8	8	4	SQYRYYIL	SQYWYYIL	NetMHC	4.27	6.01	1.407	372	0.218	11.074	15.356	1.387	6.01	4.27	10.4	7.4	20.3114066	14.74823333	31.82291802	20.73671696	M8	-0.514285714	-0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.232	372	2	1	0.5	7qC	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	99667112	99667112	T	C	ENSMUST00000107088.7	1	ENSMUSG00000030737	missense	T/A	404	Slco2b1	ENSMUST00000107088.7:c.1210A>G	ENSMUSP00000102703.1:p.Thr404Ala	H-2-Kb	8	10	2	IAASFANM	ITASFANM	NetMHC	5.86	5.92	1.01	65	0.215	17.404	13.8	0.793	5.92	5.86	10.9	9	16.70090478	25.80714726	19.75786438	31.24208431	M8	0.828571429	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.246	65	0	0	NA	7qE1	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	108066532	108066532	T	C	ENSMUST00000071658.2	NA	ENSMUSG00000063120	missense	M/V	89	Olfr480	ENSMUST00000071658.2:c.265A>G	ENSMUSP00000071583.2:p.Met89Val	H-2-Kb	8	11	1	VYLFLSHL	MYLFLSHL	NetMHCpan	13.1	28.9	2.206	269	0.238	134.327	287.934	2.144	52.58	23.33	28.9	13.1	523.2870654	245.323979	556.8522772	262.8693795	M8	1.271428571	1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.23	269	0	0	NA	7qE3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	108031681	108031681	A	G	ENSMUST00000210173.2	3	ENSMUSG00000094426	missense	Y/H	221	Olfr478	ENSMUST00000210173.2:c.661T>C	ENSMUSP00000147713.1:p.Tyr221His	H-2-Kb	8	9	3	ISHIYILI	ISYIYILI	NetMHCpan	32.1	7	0.218	481	0.26	78.835	8.59	0.109	4.24	53.98	7	32.1	10.56185011	124.3769779	10.17981768	103.6907462	M8	1.714285714	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.265	481	0	0	NA	7qE3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	62419972	62419972	TC	T	ENSMUST00000094340.3	NA	ENSMUSG00000070527	FS	E/X	24	Mkrn3	ENSMUST00000094340.3:c.70del	ENSMUSP00000091898.3:p.Glu24ArgfsTer36	H-2-Kb	8	11	1	RVCLFPPL	NA	SMMPMBEC	44.951	NA	NA	28	0.179	58.684	NA	NA	NA	65.4	NA	82.2	NA	51.96847826	NA	44.95106648	M8	1.985714286	1.985714286	FALSE	FALSE	FALSE	1	FALSE	0	Strelka2;Vardict	2	0.1786	28	2	0	0	7qC	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.854743958	sgMsh2	cell line
chr7	102927910	102927910	T	A	ENSMUST00000215782.2	5	ENSMUSG00000073963	missense	I/N	94	Olfr572	ENSMUST00000215782.2:c.281T>A	ENSMUSP00000149174.1:p.Ile94Asn	H-2-Kb	8	6	6	FNYKFNTF	FNYKFITF	NetMHCpan	50.8	48.2	0.949	230	0.23	130.321	119.91	0.92	86.45	77.52	48.2	50.8	158.0301673	183.1217795	153.3698525	187.8192059	M8	-1.042857143	-1.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.235	230	0	0	NA	7qE3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	127905762	127905762	T	C	ENSMUST00000071056.13	1	ENSMUSG00000030802	missense	I/T	130	Bckdk	ENSMUST00000071056.13:c.389T>C	ENSMUSP00000070345.7:p.Ile130Thr	H-2-Kb	8	10	2	YTRAFQKL	YIRAFQKL	NetMHCpan	121.7	137.9	1.133	235	0.213	139.122	142.352	1.023	95.73	131.44	137.9	121.7	146.8047136	146.8047136	188.2521739	180.6092545	M8	-0.6	-0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.211	235	171	31	0.18128655	7qF3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	105555462	105555462	AC	A	ENSMUST00000046983.9	1	ENSMUSG00000037049	FS	P/X	183	Smpd1	ENSMUST00000046983.9:c.551del	ENSMUSP00000042187.8:p.Pro184GlnfsTer72	H-2-Kb	8	47	0	VQIHFAAA	NA	SMMPMBEC	150.918	NA	NA	97	0.309	175.233	NA	NA	NA	165.65	NA	488.7	NA	184.8161845	NA	150.9176382	M8	0.857142857	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.337	97	41	1	0.024390244	7qE3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	108171874	108171874	G	A	ENSMUST00000072035.3	NA	ENSMUSG00000096068	missense	P/L	290	Olfr486	ENSMUST00000072035.3:c.869C>T	ENSMUSP00000071918.3:p.Pro290Leu	H-2-Kb	8	5	7	VIPVLNLL	VIPVLNPL	NetMHC	173.73	43.03	0.248	302	0.212	354.134	130.801	0.369	43.03	173.73	146.4	422.9	115.8083836	306.71852	145.794117	401.5503419	M8	2.142857143	2.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.215	302	0	0	NA	7qE3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	44943424	44943424	G	GA	ENSMUST00000120929.8	1	ENSMUSG00000059891	FS	-/X	47-48	Tsks	ENSMUST00000120929.8:c.149dup	ENSMUSP00000112673.1:p.Lys51GlufsTer76	H-2-Kb	8	77	0	TCFPYNTL	NA	NetMHCpan	52.5	NA	NA	43	0.186	118.718	NA	NA	NA	187.11	NA	52.5	NA	125.8171954	NA	111.6194813	M8	0.285714286	0.285714286	FALSE	FALSE	FALSE	1	FALSE	0	Strelka2;Vardict	2	0.186	43	0	0	NA	7qB3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.890158882	sgMsh2	cell line
chr7	108031681	108031681	A	G	ENSMUST00000210173.2	3	ENSMUSG00000094426	missense	Y/H	221	Olfr478	ENSMUST00000210173.2:c.661T>C	ENSMUSP00000147713.1:p.Tyr221His	H-2-Kb	8	7	5	IAISHIYI	IAISYIYI	NetMHCpan	132.8	22.8	0.172	481	0.26	294.664	57.982	0.197	28.92	212.85	22.8	132.8	99.25216755	384.3616066	87.04423244	376.4783444	M8	1.428571429	1.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.265	481	0	0	NA	7qE3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	91940074	91940074	T	A	ENSMUST00000107196.9	1	ENSMUSG00000052572	missense	I/N	227	Dlg2	ENSMUST00000107196.9:c.680T>A	ENSMUSP00000102814.2:p.Ile227Asn	H-2-Kb	8	5	7	SIYVTKNI	SIYVTKII	NetMHC	242.01	2437.57	10.072	135	0.2	286.831	2390.198	8.333	2437.57	242.01	1637.8	259.8	2481.646968	364.5356443	2342.825811	313.8629122	M8	0.542857143	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.218	135	0	0	NA	7qE1	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	106824071	106824071	C	A	ENSMUST00000219803.1	5	ENSMUSG00000056863	missense	G/W	152	Olfr702	ENSMUST00000219803.1:c.454G>T	ENSMUSP00000151862.1:p.Gly152Trp	H-2-Kb	8	9	3	ISWAFACS	ISGAFACS	SMM	38.172	270.234	7.079	171	0.287	141.556	2939.39	20.765	5597.11	244.41	6338.9	456.7	270.2340064	38.17156799	281.6696149	38.70258739	M8	0.914285714	1.671428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.29	171	0	0	NA	7qE3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	128271182	128271182	C	T	ENSMUST00000118169.7	1	ENSMUSG00000030781	missense	L/F	531	Slc5a2	ENSMUST00000118169.7:c.1591C>T	ENSMUSP00000112597.1:p.Leu531Phe	H-2-Kb	8	10	2	IFFICSGI	ILFICSGI	SMMPMBEC	175.687	391.507	2.228	134	0.231	225.83	490.678	2.173	781.7	250.87	329.4	282.9	589.847849	200.7890385	391.5074224	175.6871509	M8	2.271428571	2.271428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.254	134	0	0	NA	7qF3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	105555462	105555462	AC	A	ENSMUST00000046983.9	1	ENSMUSG00000037049	FS	P/X	183	Smpd1	ENSMUST00000046983.9:c.551del	ENSMUSP00000042187.8:p.Pro184GlnfsTer72	H-2-Kb	8	38	0	STWRAQTL	NA	NetMHCpan	140.5	NA	NA	97	0.309	249.349	NA	NA	NA	259.51	NA	140.5	NA	239.1883374	NA	262.2647967	M8	-0.671428571	-0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.337	97	41	1	0.024390244	7qE3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	108714066	108714066	C	A	ENSMUST00000074730.3	NA	ENSMUSG00000056946	missense	L/M	238	Olfr512	ENSMUST00000074730.3:c.712C>A	ENSMUSP00000074291.4:p.Leu238Met	H-2-Kb	8	6	6	ILFTIMRM	ILFTILRM	NetMHCpan	74.1	112.6	1.52	439	0.228	290.124	605.685	2.088	729.71	264.21	112.6	74.1	758.1235717	462.1042896	481.6593553	316.0385059	M8	1.385714286	1.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.235	439	0	0	NA	7qE3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	105035532	105035532	C	CT	ENSMUST00000219602.1	5	ENSMUSG00000073915	FS	-/X	111-112	Olfr676	ENSMUST00000219602.1:c.339dup	ENSMUSP00000151474.1:p.Ile114TyrfsTer18	H-2-Kb	8	10	5	QVFFYPFF	QVFFIHFF	NetMHCpan	106.3	1372.2	12.909	281	0.235	344.084	5756.326	16.729	3500.67	307.33	1372.2	106.3	9198.986892	380.8377582	8011.982647	428.2920371	M8	1.785714286	1.785714286	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.234	281	0	0	NA	7qE3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	106944356	106944356	A	G	ENSMUST00000055923.7	5	ENSMUSG00000045581	missense	L/P	215	Olfr710	ENSMUST00000055923.7:c.644T>C	ENSMUSP00000062956.5:p.Leu215Pro	H-2-Kb	8	10	2	IPFSYWNI	ILFSYWNI	SMM	41.662	43.027	1.033	178	0.292	107.767	39.513	0.367	142.3	367.87	36	173	43.02689433	41.66198901	35.21599796	42.53436955	M8	-0.114285714	-0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.297	178	0	0	NA	7qE3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	44991432	44991432	G	A	ENSMUST00000003290.11	1	ENSMUSG00000003190	missense	P/L	247	Bcl2l12	ENSMUST00000003290.11:c.740C>T	ENSMUSP00000003290.4:p.Pro247Leu	H-2-Kb	8	11	3	SSLVDLNL	SSPVDLNL	SMM	179.779	421.444	2.344	30	0.2	279.298	740.051	2.65	999.55	371.64	2236.3	1019.5	421.444121	179.7794304	480.5515695	186.956255	M8	1.114285714	1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.199	30	38	10	0.263157895	7qB3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.952374287	sgMsh2	cell line
chr7	56729649	56729649	G	A	ENSMUST00000068911.12	1	ENSMUSG00000055026	missense	A/V	335	Gabrg3	ENSMUST00000068911.12:c.1004C>T	ENSMUSP00000067632.6:p.Ala335Val	H-2-Kb	8	6	6	ALMEYVTL	ALMEYATL	NetMHCpan	79.7	36.7	0.46	146	0.151	330.702	69.813	0.211	43.3	383.6	36.7	79.7	134.5054866	388.8123042	96.32521787	277.8049629	M8	1.171428571	1.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.174	146	0	0	NA	7qB5	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.832729276	sgMsh2	cell line
chr7	100503182	100503182	A	G	ENSMUST00000207405.1	1	ENSMUSG00000030708	missense	M/T	309	Dnajb13	ENSMUST00000207405.1:c.926T>C	ENSMUSP00000147019.1:p.Met309Thr	H-2-Kb	8	13	2	QTLRQALL	QMLRQALL	SMM	286.906	520.883	1.816	77	0.195	461.754	706.441	1.53	350.19	416.82	892	1408.6	520.8827797	286.906244	911.4650073	506.6872779	M8	0.642857143	0.642857143	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	77	1	0	0	7qE2	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.957160088	sgMsh2	cell line
chr7	56729649	56729649	G	A	ENSMUST00000068911.12	1	ENSMUSG00000055026	missense	A/V	335	Gabrg3	ENSMUST00000068911.12:c.1004C>T	ENSMUSP00000067632.6:p.Ala335Val	H-2-Kb	8	11	1	VTLNYYSS	ATLNYYSS	SMM	108.079	407.136	3.767	146	0.151	307.162	1563.79	5.091	2498.45	430.78	2584.4	770.3	407.1364636	108.0786721	629.1294278	183.5439188	M8	-0.657142857	0.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.174	146	0	0	NA	7qB5	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.832729276	sgMsh2	cell line
chr7	108066532	108066532	T	C	ENSMUST00000071658.2	NA	ENSMUSG00000063120	missense	M/V	89	Olfr480	ENSMUST00000071658.2:c.265A>G	ENSMUSP00000071583.2:p.Met89Val	H-2-Kb	8	8	4	HTPVYLFL	HTPMYLFL	NetMHCpan	245.7	219.6	0.894	269	0.238	262.002	292.515	1.116	407.26	463.94	219.6	245.7	316.0385059	266.5262568	268.9923939	257.4779247	M8	1.571428571	1.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.23	269	0	0	NA	7qE3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	62419972	62419972	TC	T	ENSMUST00000094340.3	NA	ENSMUSG00000070527	FS	E/X	24	Mkrn3	ENSMUST00000094340.3:c.70del	ENSMUSP00000091898.3:p.Glu24ArgfsTer36	H-2-Kb	8	19	0	LSLRLLEL	NA	NetMHCpan	293.7	NA	NA	28	0.179	477.609	NA	NA	NA	496.72	NA	293.7	NA	496.2951144	NA	458.9231861	M8	0.914285714	0.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1786	28	2	0	0	7qC	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.854743958	sgMsh2	cell line
chr7	86811337	86811337	G	A	ENSMUST00000164996.1	5	ENSMUSG00000090949	missense	V/I	624	Vmn2r77	ENSMUST00000164996.1:c.1870G>A	ENSMUSP00000129540.1:p.Val624Ile	H-2-Kb	8	6	6	ETLSYILL	ETLSYVLL	SMMPMBEC	299.737	258.071	0.861	366	0.219	438.719	380.319	0.867	864.89	988.22	444.6	532.5	316.0385059	344.9371732	258.0714726	299.7367541	M8	1.871428571	1.871428571	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.223	366	0	0	NA	7qD3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	86811337	86811337	G	A	ENSMUST00000164996.1	5	ENSMUSG00000090949	missense	V/I	624	Vmn2r77	ENSMUST00000164996.1:c.1870G>A	ENSMUSP00000129540.1:p.Val624Ile	H-2-Kb	9	8	4	LSYILLTSL	LSYVLLTSL	NetMHCpan	26.5	23.3	0.879	366	0.219	55.636	50.423	0.906	24.09	28.24	23.3	26.5	76.75558746	92.92017092	84.382036	83.03286055	M8	1.871428571	1.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.223	366	0	0	NA	7qD3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	108066532	108066532	T	C	ENSMUST00000071658.2	NA	ENSMUSG00000063120	missense	M/V	89	Olfr480	ENSMUST00000071658.2:c.265A>G	ENSMUSP00000071583.2:p.Met89Val	H-2-Kb	9	10	2	PVYLFLSHL	PMYLFLSHL	SMM	27.74	12.797	0.461	269	0.238	31.825	25.891	0.814	28.38	30.85	39.4	32.8	12.79705392	27.74022632	23.40183969	47.56089297	M8	1.271428571	1.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.23	269	0	0	NA	7qE3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	106824071	106824071	C	A	ENSMUST00000219803.1	5	ENSMUSG00000056863	missense	G/W	152	Olfr702	ENSMUST00000219803.1:c.454G>T	ENSMUSP00000151862.1:p.Gly152Trp	H-2-Kb	9	9	3	ISWAFACSV	ISGAFACSV	NetMHCpan	23.3	348.2	14.944	171	0.287	185.375	608.69	3.284	306.45	32.6	348.2	23.3	869.1805512	338.1504736	910.4372116	348.5378918	M8	1.628571429	1.671428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.29	171	0	0	NA	7qE3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	56729649	56729649	G	A	ENSMUST00000068911.12	1	ENSMUSG00000055026	missense	A/V	335	Gabrg3	ENSMUST00000068911.12:c.1004C>T	ENSMUSP00000067632.6:p.Ala335Val	H-2-Kb	9	11	1	VTLNYYSSC	ATLNYYSSC	NetMHC	34.3	134.82	3.931	146	0.151	103.7	315.246	3.04	134.82	34.3	215.3	57	708.1251187	238.292295	415.1929781	150.4007493	M8	-0.2	0.057142857	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.174	146	0	0	NA	7qB5	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.832729276	sgMsh2	cell line
chr7	105035532	105035532	C	CT	ENSMUST00000219602.1	5	ENSMUSG00000073915	FS	-/X	111-112	Olfr676	ENSMUST00000219602.1:c.339dup	ENSMUSP00000151474.1:p.Ile114TyrfsTer18	H-2-Kb	9	8	7	VAQVFFYPF	VAQVFFIHF	NetMHC	36.21	51.23	1.415	281	0.235	51.855	75.794	1.462	51.23	36.21	132.8	56.6	62.82174563	47.10966327	88.76668471	75.72686885	M8	0.885714286	1.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.234	281	0	0	NA	7qE3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	99667112	99667112	T	C	ENSMUST00000107088.7	1	ENSMUSG00000030737	missense	T/A	404	Slco2b1	ENSMUST00000107088.7:c.1210A>G	ENSMUSP00000102703.1:p.Thr404Ala	H-2-Kb	9	10	2	IAASFANML	ITASFANML	NetMHC	49.5	59.95	1.211	65	0.215	106.089	142.925	1.347	59.95	49.5	72	56.9	213.850367	155.2780255	358.3026333	277.4917016	M8	1.114285714	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.246	65	0	0	NA	7qE1	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	99667112	99667112	T	C	ENSMUST00000107088.7	1	ENSMUSG00000030737	missense	T/A	404	Slco2b1	ENSMUST00000107088.7:c.1210A>G	ENSMUSP00000102703.1:p.Thr404Ala	H-2-Kb	9	9	3	SIAASFANM	SITASFANM	NetMHC	52.64	67.03	1.273	65	0.215	261.476	391.398	1.497	67.03	52.64	142.9	83.3	639.8968908	439.6529586	738.3291242	556.2243536	M8	0.828571429	1.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.246	65	0	0	NA	7qE1	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	86230157	86230157	G	T	ENSMUST00000165771.1	5	ENSMUSG00000091239	missense	L/I	312	Vmn2r76	ENSMUST00000165771.1:c.934C>A	ENSMUSP00000127309.1:p.Leu312Ile	H-2-Kb	9	11	1	IFNSFHGTL	LFNSFHGTL	NetMHC	90.6	323.06	3.566	186	0.242	213.074	517.132	2.427	323.06	90.6	536.4	171.4	497.86317	254.7475407	565.2622723	289.2344371	M8	-0.285714286	0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.245	186	0	0	NA	7qD3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	106944356	106944356	A	G	ENSMUST00000055923.7	5	ENSMUSG00000045581	missense	L/P	215	Olfr710	ENSMUST00000055923.7:c.644T>C	ENSMUSP00000062956.5:p.Leu215Pro	H-2-Kb	9	7	5	VSLIPFSYW	VSLILFSYW	NetMHC	122.33	104.11	0.851	178	0.292	406.59	272.979	0.671	104.11	122.33	907	988.8	333.5108752	449.8937915	212.4467052	363.2871195	M8	0.928571429	1.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.297	178	0	0	NA	7qE3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	108031681	108031681	A	G	ENSMUST00000210173.2	3	ENSMUSG00000094426	missense	Y/H	221	Olfr478	ENSMUST00000210173.2:c.661T>C	ENSMUSP00000147713.1:p.Tyr221His	H-2-Kb	9	7	5	IAISHIYIL	IAISYIYIL	NetMHCpan	89.6	39.6	0.442	481	0.26	172.099	112.772	0.655	92.77	178.58	39.6	89.6	132.7730709	165.6189397	178.3405083	224.0010221	M8	1.714285714	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.265	481	0	0	NA	7qE3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	86802040	86802040	G	T	ENSMUST00000164996.1	5	ENSMUSG00000090949	missense	W/L	378	Vmn2r77	ENSMUST00000164996.1:c.1133G>T	ENSMUSP00000129540.1:p.Trp378Leu	H-2-Kb	9	9	3	FQLFFEPPL	FQWFFEPPL	NetMHC	194.17	122.63	0.632	399	0.248	236.011	185.141	0.784	122.63	194.17	181	229.3	189.282298	242.7224795	210.0148478	293.2580889	M8	0.928571429	0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.258	399	0	0	NA	7qD3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	56729649	56729649	G	A	ENSMUST00000068911.12	1	ENSMUSG00000055026	missense	A/V	335	Gabrg3	ENSMUST00000068911.12:c.1004C>T	ENSMUSP00000067632.6:p.Ala335Val	H-2-Kb	9	5	7	AALMEYVTL	AALMEYATL	NetMHCpan	102.2	38.8	0.38	146	0.151	233.107	112.558	0.483	37.47	213.72	38.8	102.2	197.2922383	284.5181656	186.3159349	252.4933823	M8	1.171428571	1.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.174	146	0	0	NA	7qB5	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.832729276	sgMsh2	cell line
chr7	66784798	66784798	T	C	ENSMUST00000066475.10	1	ENSMUSG00000030510	missense	W/R	216	Cers3	ENSMUST00000066475.10:c.646T>C	ENSMUSP00000069238.8:p.Trp216Arg	H-2-Kb	9	8	4	SQYRYYILE	SQYWYYILE	SMM	92.493	70.325	0.76	372	0.218	160.502	195.895	1.221	314.3	217.43	396.3	364.7	70.32504197	92.49324152	77.49077422	103.5738214	M8	-0.514285714	-0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.232	372	2	1	0.5	7qC	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	44860083	44860083	A	T	ENSMUST00000003044.13	1	ENSMUSG00000002963	missense	I/F	214	Pnkp	ENSMUST00000003044.13:c.640A>T	ENSMUSP00000003044.7:p.Ile214Phe	H-2-Kb	9	10	2	VFFTNQMGI	VIFTNQMGI	NetMHC	224.67	173.98	0.774	181	0.21	495.62	287.013	0.579	173.98	224.67	171	466.3	400.0460623	524.9404026	441.8247089	598.7561676	M8	0.157142857	0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.197	181	88	10	0.113636364	7qB3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.942802686	sgMsh2	cell line
chr7	128271182	128271182	C	T	ENSMUST00000118169.7	1	ENSMUSG00000030781	missense	L/F	531	Slc5a2	ENSMUST00000118169.7:c.1591C>T	ENSMUSP00000112597.1:p.Leu531Phe	H-2-Kb	9	9	3	IIFFICSGI	IILFICSGI	NetMHCpan	210.9	998.4	4.734	134	0.231	302.474	1002.956	3.316	985.29	241.66	998.4	210.9	1177.90428	419.8653158	1007.511472	363.2871195	M8	2.271428571	2.971428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.254	134	0	0	NA	7qF3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	55933103	55933103	G	A	ENSMUST00000119201.7	1	ENSMUSG00000030452	missense	A/V	298	Nipa2	ENSMUST00000119201.7:c.893C>T	ENSMUSP00000114020.1:p.Ala298Val	H-2-Kb	9	3	9	IVGIFLLHV	IVGIFLLHA	SMMPMBEC	293.934	1014.495	3.451	190	0.253	319.481	1799.346	5.632	2393.35	336.89	4122.3	831.1	1205.341196	302.0716724	1014.495208	293.9341186	M8	2.214285714	3.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.259	190	100	23	0.23	7qB5	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	108317521	108317521	T	C	ENSMUST00000214605.1	2	ENSMUSG00000094612	missense	V/A	209	Olfr491	ENSMUST00000214605.1:c.626T>C	ENSMUSP00000150694.1:p.Val209Ala	H-2-Kb	9	10	2	VATVFVISV	VVTVFVISV	NetMHC	342.27	467.62	1.366	473	0.252	395.11	553.012	1.4	467.62	342.27	735.6	356.6	487.6519891	433.6206938	618.3722614	534.872168	M8	2.628571429	3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.245	473	0	0	NA	7qE3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	128271182	128271182	C	T	ENSMUST00000118169.7	1	ENSMUSG00000030781	missense	L/F	531	Slc5a2	ENSMUST00000118169.7:c.1591C>T	ENSMUSP00000112597.1:p.Leu531Phe	H-2-Kb	9	10	2	IFFICSGIL	ILFICSGIL	SMM	278.042	722.953	2.6	134	0.231	316.448	665.719	2.104	905.08	347.63	437.3	359.4	722.9528931	278.0417415	608.4851727	285.2659918	M8	2.414285714	2.414285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.254	134	0	0	NA	7qF3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	105035532	105035532	C	CT	ENSMUST00000219602.1	5	ENSMUSG00000073915	FS	-/X	111-112	Olfr676	ENSMUST00000219602.1:c.339dup	ENSMUSP00000151474.1:p.Ile114TyrfsTer18	H-2-Kb	9	9	6	AQVFFYPFF	AQVFFIHFF	NetMHCpan	267.8	1677.2	6.263	281	0.235	330.906	2524.533	7.629	3054.59	389.15	1677.2	267.8	2529.938709	327.4236157	2519.126636	334.3874735	M8	1.785714286	1.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.234	281	0	0	NA	7qE3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	106944356	106944356	A	G	ENSMUST00000055923.7	5	ENSMUSG00000045581	missense	L/P	215	Olfr710	ENSMUST00000055923.7:c.644T>C	ENSMUSP00000062956.5:p.Leu215Pro	H-2-Kb	9	10	2	IPFSYWNII	ILFSYWNII	SMM	376.799	180.347	0.479	178	0.292	455.19	182.265	0.4	220.3	452.78	82.2	457.6	180.3474475	376.7992242	184.183194	462.6472659	M8	0.757142857	0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.297	178	0	0	NA	7qE3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	45897436	45897436	C	T	ENSMUST00000069772.15	1	ENSMUSG00000002781	missense	L/F	9	Tmem143	ENSMUST00000069772.15:c.25C>T	ENSMUSP00000070405.7:p.Leu9Phe	H-2-Kb	9	1	9	MTVARWLRF	MTVARWLRL	SMMPMBEC	346.937	200.563	0.578	44	0.273	447.198	172.436	0.386	144.31	476.98	90.6	447.6	264.9171047	446.7967444	200.5626226	346.9365057	M8	0.385714286	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.244	44	18	5	0.277777778	7qB3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	103716732	103716732	T	C	ENSMUST00000215723.1	5	ENSMUSG00000094822	missense	L/P	46	Olfr243	ENSMUST00000215723.1:c.137T>C	ENSMUSP00000150329.1:p.Leu46Pro	H-2-Kb	9	4	8	IALLGNSPL	IALLGNSLL	SMMPMBEC	414.238	577.099	1.393	381	0.218	461.459	791.636	1.716	1041.48	535.68	950.7	426.2	632.5720517	496.7181164	577.0985724	414.2380608	M8	0.728571429	1.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.217	381	0	0	NA	7qE3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	81348426	81348426	T	A	ENSMUST00000178892.2	1	ENSMUSG00000025586	missense	Y/F	535	Cpeb1	ENSMUST00000178892.2:c.1604A>T	ENSMUSP00000137079.1:p.Tyr535Phe	H-2-Kb	9	7	5	VCFKFFCRS	VCFKYFCRS	SMM	96.407	118.607	1.23	57	0.175	202.811	222.153	1.095	822.05	618.66	325.7	298.9	118.6069123	96.40731774	113.5664369	106.721028	M8	0.242857143	1.957142857	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.215	57	4	0	0	7qD3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr8	13576361	13576361	T	C	ENSMUST00000117551.3	1	ENSMUSG00000031453	missense	M/V	741	Rasa3	ENSMUST00000117551.3:c.2221A>G	ENSMUSP00000112998.2:p.Met741Val	H-2-Db	9	4	8	YSLFNLYVG	YSLFNLYMG	NetMHC	87.93	363.82	4.138	154	0.201	182.548	418.279	2.291	363.82	87.93	556	201.2	472.737441	298.2771604	313.0184957	163.896621	M8	1.342857143	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.218	154	99	15	0.151515152	8qA1.1	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr8	109551631	109551631	C	T	ENSMUST00000042601.8	1	ENSMUSG00000037993	missense	D/N	1138	Dhx38	ENSMUST00000042601.8:c.3412G>A	ENSMUSP00000047865.7:p.Asp1138Asn	H-2-Db	9	7	5	VTAVNGEWL	VTAVDGEWL	NetMHC	127.35	8821.39	69.269	104	0.24	384.136	9938.338	25.872	8821.39	127.35	6722.3	173.2	12723.89276	660.1156057	11055.28645	595.0726634	M8	0.214285714	0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.255	104	74	23	0.310810811	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr8	10506522	10506522	TA	T	ENSMUST00000207477.1	1	ENSMUSG00000039057	FS	L/X	994	Myo16	ENSMUST00000207477.1:c.2987del	ENSMUSP00000146677.1:p.Lys996ArgfsTer74	H-2-Kb	8	53	0	SSFASSPI	NA	NetMHC	58.49	NA	NA	115	0.348	87.215	NA	NA	NA	58.49	NA	66.6	NA	107.830098	NA	122.6704617	M8	0.728571429	0.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.351	115	0	0	NA	8qA1.1	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr8	56110553	56110553	A	G	ENSMUST00000000275.8	1	ENSMUSG00000038257	missense	K/R	361	Glra3	ENSMUST00000000275.8:c.1082A>G	ENSMUSP00000000275.7:p.Lys361Arg	H-2-Kb	8	6	6	VSRQHREL	VSRQHKEL	SMM	69.621	143.794	2.065	226	0.226	100.959	250.036	2.477	322.76	105.37	1502.7	872.9	143.7937467	69.6209588	177.3127641	96.54727043	M8	-2.314285714	-2.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	226	0	0	NA	8qB2	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr8	124028933	124028933	T	C	ENSMUST00000034457.8	1	ENSMUSG00000031976	missense	Y/H	460	Urb2	ENSMUST00000034457.8:c.1378T>C	ENSMUSP00000034457.8:p.Tyr460His	H-2-Kb	8	7	5	VFQTHAKL	VFQTYAKL	SMM	70.915	18.312	0.258	195	0.179	106.19	20.473	0.193	16.15	114.49	51	301.1	18.31217795	70.91530907	22.63288934	97.89037676	M8	-0.414285714	-0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.195	195	76	23	0.302631579	8qE2	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.933231086	sgMsh2	cell line
chr7	143781688	143781688	A	T	ENSMUST00000054048.9	1	ENSMUSG00000048965	missense	L/H	26	Mrgpre	ENSMUST00000054048.9:c.77T>A	ENSMUSP00000058000.8:p.Leu26His	H-2-Kb	8	7	5	TILSHTEL	TILSLTEL	SMM	254.531	564.599	2.218	96	0.24	270.59	569.599	2.105	574.6	263.48	405.1	277.7	564.598864	254.5305993	580.4168341	288.8949831	M8	0.557142857	0.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.253	96	0	0	NA	7qF5	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr8	105878842	105878842	T	C	ENSMUST00000008594.8	1	ENSMUSG00000008450	missense	F/S	103	Nutf2	ENSMUST00000008594.8:c.308T>C	ENSMUSP00000008594.7:p.Phe103Ser	H-2-Kb	8	5	7	MGFHQMSL	MGFHQMFL	NetMHCpan	61.8	73.9	1.196	164	0.238	150.906	134.413	0.891	345.7	271.66	73.9	61.8	105.6185011	124.0909187	163.2074578	177.7215122	M8	0.085714286	0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.223	164	2	0	0	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	141466182	141466182	GC	G	ENSMUST00000053670.11	1	ENSMUSG00000048200	FS	P/X	382	Cracr2b	ENSMUST00000053670.11:c.1149del	ENSMUSP00000055899.5:p.Arg384AspfsTer84	H-2-Kb	8	75	0	SVFILSSF	NA	NetMHCpan	118.6	NA	NA	48	0.292	487.755	NA	NA	NA	293.58	NA	118.6	NA	840.8915726	NA	681.9303192	M8	2.357142857	2.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.308	48	4	0	0	7qF5	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr8	83725234	83725234	A	G	ENSMUST00000075843.12	1	ENSMUSG00000002885	missense	M/T	563	Adgre5	ENSMUST00000075843.12:c.1688T>C	ENSMUSP00000075240.6:p.Met563Thr	H-2-Kb	8	7	5	SSRTTVHL	SSRTMVHL	SMMPMBEC	310.27	134.196	0.433	143	0.154	344.132	130.589	0.379	73.79	367.09	280.6	1261.9	126.9813676	321.1737185	134.1961326	310.2701531	M8	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.166	143	85	22	0.258823529	8qC2	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.794442873	sgMsh2	cell line
chr8	124028933	124028933	T	C	ENSMUST00000034457.8	1	ENSMUSG00000031976	missense	Y/H	460	Urb2	ENSMUST00000034457.8:c.1378T>C	ENSMUSP00000034457.8:p.Tyr460His	H-2-Kb	9	6	6	TVFQTHAKL	TVFQTYAKL	NetMHC	42.12	10.72	0.255	195	0.179	141.749	43.932	0.31	10.72	42.12	14.2	48.4	86.71814915	303.4659719	73.66310144	235.0985768	M8	-0.414285714	0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.195	195	76	23	0.302631579	8qE2	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.933231086	sgMsh2	cell line
chr8	109551631	109551631	C	T	ENSMUST00000042601.8	1	ENSMUSG00000037993	missense	D/N	1138	Dhx38	ENSMUST00000042601.8:c.3412G>A	ENSMUSP00000047865.7:p.Asp1138Asn	H-2-Kb	9	10	2	VNGEWLAEL	VDGEWLAEL	NetMHC	116.53	3630.39	31.154	104	0.24	130.917	2132.941	16.292	3630.39	116.53	5738.1	292.5	635.4918716	125.9244318	562.6651281	135.909558	M8	0.157142857	0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.255	104	74	23	0.310810811	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr8	109954634	109954634	T	C	ENSMUST00000051430.6	1	ENSMUSG00000001672	missense	I/V	210	Marveld3	ENSMUST00000051430.6:c.628A>G	ENSMUSP00000052309.6:p.Ile210Val	H-2-Kb	9	11	1	VYYYQYGGA	IYYYQYGGA	NetMHC	145.17	174.71	1.203	45	0.244	185.852	259.231	1.395	174.71	145.17	594.1	549.4	260.6813732	177.0557356	257.7804634	194.6480243	M8	-0.914285714	-0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.245	45	2	0	0	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr8	105878842	105878842	T	C	ENSMUST00000008594.8	1	ENSMUSG00000008450	missense	F/S	103	Nutf2	ENSMUST00000008594.8:c.308T>C	ENSMUSP00000008594.7:p.Phe103Ser	H-2-Kb	9	4	8	IMGFHQMSL	IMGFHQMFL	SMMPMBEC	166.437	225.554	1.355	164	0.238	175.497	253.816	1.446	305.48	177.57	275.3	221.2	232.3325184	173.4243199	225.553723	166.4370463	M8	0.085714286	0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.223	164	2	0	0	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr8	105878842	105878842	T	C	ENSMUST00000008594.8	1	ENSMUSG00000008450	missense	F/S	103	Nutf2	ENSMUST00000008594.8:c.308T>C	ENSMUSP00000008594.7:p.Phe103Ser	H-2-Kb	9	5	7	MGFHQMSLL	MGFHQMFLL	NetMHCpan	61.9	85	1.373	164	0.238	289.966	372.137	1.283	284.96	204	85	61.9	459.3143352	375.9326101	492.3228579	387.4806325	M8	0.685714286	0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.223	164	2	0	0	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	141466182	141466182	GC	G	ENSMUST00000053670.11	1	ENSMUSG00000048200	FS	P/X	382	Cracr2b	ENSMUST00000053670.11:c.1149del	ENSMUSP00000055899.5:p.Arg384AspfsTer84	H-2-Kb	9	80	0	SSFFLGGGV	NA	NetMHCpan	198.4	NA	NA	48	0.292	391.716	NA	NA	NA	215.56	NA	198.4	NA	626.7725963	NA	567.8714044	M8	1.771428571	1.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.308	48	4	0	0	7qF5	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	138229856	138229856	A	G	ENSMUST00000160436.1	5	ENSMUSG00000091002	missense	M/T	464	Tcerg1l	ENSMUST00000160436.1:c.1391T>C	ENSMUSP00000124476.1:p.Met464Thr	H-2-Kb	9	5	7	VTHFRDTLL	VTHFRDMLL	SMMPMBEC	144.295	160.048	1.109	78	0.115	193.254	171.84	0.889	177.68	224.66	340.6	468.5	166.0007308	161.8489924	160.0479073	144.2945739	M8	-0.214285714	-0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.129	78	0	0	NA	7qF4	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.617368257	sgMsh2	cell line
chr7	141466182	141466182	GC	G	ENSMUST00000053670.11	1	ENSMUSG00000048200	FS	P/X	382	Cracr2b	ENSMUST00000053670.11:c.1149del	ENSMUSP00000055899.5:p.Arg384AspfsTer84	H-2-Kb	9	75	0	SVFILSSFF	NA	NetMHC	240.43	NA	NA	48	0.292	282.49	NA	NA	NA	240.43	NA	249.4	NA	315.5803838	NA	438.783209	M8	2.157142857	2.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.308	48	4	0	0	7qF5	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	141466182	141466182	GC	G	ENSMUST00000053670.11	1	ENSMUSG00000048200	FS	P/X	382	Cracr2b	ENSMUST00000053670.11:c.1149del	ENSMUSP00000055899.5:p.Arg384AspfsTer84	H-2-Kb	9	52	0	VALPRRHPM	NA	SMM	174.225	NA	NA	48	0.292	228.114	NA	NA	NA	268.62	NA	297	NA	174.2248102	NA	187.6074152	M8	-1.385714286	-0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.308	48	4	0	0	7qF5	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr8	56110553	56110553	A	G	ENSMUST00000000275.8	1	ENSMUSG00000038257	missense	K/R	361	Glra3	ENSMUST00000000275.8:c.1082A>G	ENSMUSP00000000275.7:p.Lys361Arg	H-2-Kb	9	6	6	VSRQHRELL	VSRQHKELL	SMM	223.414	253.577	1.135	226	0.226	294.719	447.137	1.517	629.88	360.22	1230.8	842.1	253.577082	223.4138023	264.3930288	229.2186762	M8	-1.657142857	-1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	226	0	0	NA	8qB2	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr7	141466182	141466182	GC	G	ENSMUST00000053670.11	1	ENSMUSG00000048200	FS	P/X	382	Cracr2b	ENSMUST00000053670.11:c.1149del	ENSMUSP00000055899.5:p.Arg384AspfsTer84	H-2-Kb	9	68	0	VVKAFSPSV	NA	NetMHCpan	263.7	NA	NA	48	0.292	439.311	NA	NA	NA	378.46	NA	263.7	NA	500.1612019	NA	600.1364431	M8	0.242857143	0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.308	48	4	0	0	7qF5	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr8	105178615	105178615	A	T	ENSMUST00000052209.8	1	ENSMUSG00000031885	missense	N/I	63	Cbfb	ENSMUST00000052209.8:c.188A>T	ENSMUSP00000059382.2:p.Asn63Ile	H-2-Kb	9	3	9	IAFVATGTI	IAFVATGTN	NetMHCpan	147.4	7924.2	53.76	125	0.224	476.809	5159.061	10.82	13674.64	401.4	7924.2	147.4	2393.922023	552.2172896	1762.990613	624.0939895	M8	1.642857143	2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.233	125	334	76	0.22754491	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr8	105395284	105395284	C	A	ENSMUST00000063071.12	1	ENSMUSG00000051648	missense	E/D	210	Kctd19	ENSMUST00000063071.12:c.630G>T	ENSMUSP00000050687.6:p.Glu210Asp	H-2-Kb	9	10	2	SDFRFIVNF	SEFRFIVNF	NetMHCpan	372.9	503.4	1.35	31	0.194	410.724	421.488	1.026	380.67	481.17	503.4	372.9	412.2019102	427.6711949	430.7745129	393.7766863	M8	1.3	1.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.211	31	0	0	NA	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr9	100855832	100855832	A	T	ENSMUST00000129269.7	1	ENSMUSG00000037286	missense	E/V	414	Stag1	ENSMUST00000129269.7:c.1241A>T	ENSMUSP00000116205.1:p.Glu414Val	H-2-Db	9	3	9	EALSNEDCV	EALSNEDCE	NetMHC	162.17	20754.53	127.98	357	0.221	364.555	11513.819	31.583	20754.53	162.17	29954.3	951.5	2273.107631	411.7370988	1269.316718	317.3730167	M8	-0.114285714	-0.114285714	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.233	357	52	10	0.192307692	9qE3.3	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr9	106155782	106155782	A	G	ENSMUST00000036382.12	1	ENSMUSG00000020258	missense	V/A	344	Glyctk	ENSMUST00000036382.12:c.1031T>C	ENSMUSP00000047761.6:p.Val344Ala	H-2-Kb	8	10	2	RAARFYGL	RVARFYGL	NetMHCpan	27.8	30.5	1.097	87	0.276	63.802	70.784	1.109	50	37.5	30.5	27.8	91.56721386	90.10315536	110.8510982	119.8781411	M8	0.571428571	0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.269	87	0	0	NA	9qF1	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr9	106155782	106155782	A	G	ENSMUST00000036382.12	1	ENSMUSG00000020258	missense	V/A	344	Glyctk	ENSMUST00000036382.12:c.1031T>C	ENSMUSP00000047761.6:p.Val344Ala	H-2-Kb	8	11	1	AARFYGLL	VARFYGLL	NetMHCpan	46.2	13.4	0.29	87	0.276	94.506	24.316	0.257	14.69	61.15	13.4	46.2	33.94220093	127.8615603	42.43654321	145.4587999	M8	0.857142857	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.269	87	0	0	NA	9qF1	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr9	39258136	39258136	A	C	ENSMUST00000076903.2	NA	ENSMUSG00000063380	missense	C/G	182	Olfr945	ENSMUST00000076903.2:c.544T>G	ENSMUSP00000076169.2:p.Cys182Gly	H-2-Kb	8	6	6	INHYFGDI	INHYFCDI	NetMHCpan	102	90.9	0.891	358	0.494	276.289	313.213	1.134	217.41	182.12	90.9	102	466.380088	456.8146256	409.0157201	370.458872	M8	-0.657142857	-0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.502	358	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr9	38848204	38848204	C	T	ENSMUST00000217350.1	5	ENSMUSG00000062103	missense	A/V	30	Olfr924	ENSMUST00000217350.1:c.89C>T	ENSMUSP00000149849.1:p.Ala30Val	H-2-Kb	8	11	1	VIYVITVV	AIYVITVV	NetMHC	202.6	1252.59	6.183	331	0.233	217.935	913.276	4.191	1252.59	202.6	849.9	203.2	976.6523514	259.2626764	797.5170931	232.6697911	M8	2.8	2.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.233	331	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr9	39018999	39018999	G	T	ENSMUST00000214410.1	5	ENSMUSG00000058820	missense	L/I	181	Olfr146	ENSMUST00000214410.1:c.541C>A	ENSMUSP00000149294.1:p.Leu181Ile	H-2-Kb	8	4	8	INHYFCDI	INHYFCDL	NetMHCpan	90.9	29.4	0.323	309	0.217	313.213	50.321	0.161	26.98	217.41	29.4	90.9	71.90183929	466.380088	71.24263926	409.0157201	M8	-0.242857143	-0.242857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.229	309	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr9	88476836	88476836	A	G	ENSMUST00000173801.7	1	ENSMUSG00000032423	missense	F/L	207	Syncrip	ENSMUST00000173801.7:c.619T>C	ENSMUSP00000133649.1:p.Phe207Leu	H-2-Kb	8	5	7	LNRGYALV	LNRGYAFV	NetMHC	300.95	433.7	1.441	81	0.173	353.739	317.073	0.896	433.7	300.95	347.9	331	249.8848923	376.4783444	286.246378	409.9585987	M8	0.014285714	0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.171	81	54	7	0.12962963	9qE3.1	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.818371875	sgMsh2	cell line
chr9	66451385	66451385	G	T	ENSMUST00000042824.12	5	ENSMUSG00000038664	missense	G/W	2583	Herc1	ENSMUST00000042824.12:c.7747G>T	ENSMUSP00000044801.6:p.Gly2583Trp	H-2-Kb	8	8	4	RALWLADL	RALGLADL	NetMHC	409.75	2553.6	6.232	210	0.233	480.118	1904.439	3.967	2553.6	409.75	2855.4	473	1212.662646	487.2367077	1255.278239	549.2119775	M8	1.514285714	1.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.228	210	31	9	0.290322581	9qC	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr9	106155782	106155782	A	G	ENSMUST00000036382.12	1	ENSMUSG00000020258	missense	V/A	344	Glyctk	ENSMUST00000036382.12:c.1031T>C	ENSMUSP00000047761.6:p.Val344Ala	H-2-Kb	9	10	2	RAARFYGLL	RVARFYGLL	NetMHC	16.87	23.3	1.381	87	0.276	71.279	81.97	1.15	23.3	16.87	21.8	17.5	140.6403699	125.0575741	181.6561058	157.1267038	M8	0.857142857	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.269	87	0	0	NA	9qF1	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr9	41969739	41969739	T	G	ENSMUST00000060989.8	1	ENSMUSG00000049313	missense	K/T	2162	Sorl1	ENSMUST00000060989.8:c.6485A>C	ENSMUSP00000058613.8:p.Lys2162Thr	H-2-Kb	9	7	5	ILYTTHRRL	ILYTKHRRL	NetMHCpan	38.5	39.5	1.026	36	0.222	207.103	89.609	0.433	28.42	39.88	39.5	38.5	191.9154771	390.9399022	139.7172407	374.3260056	M8	-1.585714286	-0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.219	36	2	2	1	9qA5.1	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr9	39078200	39078200	A	G	ENSMUST00000056499.3	NA	ENSMUSG00000048501	missense	F/L	182	Olfr938	ENSMUST00000056499.3:c.544T>C	ENSMUSP00000055053.2:p.Phe182Leu	H-2-Kb	9	3	9	INHYFCDLL	INHYFCDLF	NetMHC	40.99	129.13	3.15	206	0.223	94.887	238.502	2.514	129.13	40.99	365.4	57	223.9288243	132.7730709	253.0754397	146.3019114	M8	0.7	0.7	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.232	206	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr9	71725634	71725634	T	G	ENSMUST00000072899.8	5	ENSMUSG00000032232	missense	N/T	145	Cgnl1	ENSMUST00000072899.8:c.434A>C	ENSMUSP00000072672.2:p.Asn145Thr	H-2-Kb	9	10	2	LTFQRHPEL	LNFQRHPEL	NetMHCpan	36.8	28.1	0.764	145	0.234	90.799	70.924	0.781	73.26	81.31	28.1	36.8	84.74420308	133.0791444	68.58829388	100.2882377	M8	-1.385714286	-0.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.233	145	114	29	0.254385965	9qD	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr9	96297705	96297705	G	GA	ENSMUST00000165768.3	1	ENSMUSG00000032411	FS	E/EX	140	Tfdp2	ENSMUST00000165768.3:c.426dup	ENSMUSP00000128260.2:p.Glu143ArgfsTer47	H-2-Kb	9	20	0	PAYQFCSGM	NA	NetMHC	85.15	NA	NA	163	0.301	106.96	NA	NA	NA	85.15	NA	165.8	NA	88.53398242	NA	125.3862749	M8	0.171428571	0.171428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.28	163	95	0	0	9qE3.3	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr9	38606767	38606767	T	C	ENSMUST00000217057.1	3	ENSMUSG00000047050	missense	F/L	101	Olfr914	ENSMUST00000217057.1:c.301T>C	ENSMUSP00000150241.1:p.Phe101Leu	H-2-Kb	9	8	4	MTQLYFFGF	MTQFYFFGF	NetMHC	185.46	228.71	1.233	242	0.219	328.692	292.694	0.89	228.71	185.46	277.7	400.9	307.6876041	286.4903513	352.5737704	370.8941642	M8	1	1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	242	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr9	38606767	38606767	T	C	ENSMUST00000217057.1	3	ENSMUSG00000047050	missense	F/L	101	Olfr914	ENSMUST00000217057.1:c.301T>C	ENSMUSP00000150241.1:p.Phe101Leu	H-2-Kb	9	9	3	TQLYFFGFF	TQFYFFGFF	NetMHC	202.41	67	0.331	242	0.219	276.017	89.504	0.324	67	202.41	59.3	241.4	114.0538632	319.9705442	112.0082469	310.6347231	M8	1.9	1.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.226	242	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr9	39258136	39258136	A	C	ENSMUST00000076903.2	NA	ENSMUSG00000063380	missense	C/G	182	Olfr945	ENSMUST00000076903.2:c.544T>G	ENSMUSP00000076169.2:p.Cys182Gly	H-2-Kb	9	5	7	VINHYFGDI	VINHYFCDI	NetMHC	248.12	402.57	1.622	358	0.494	313.678	336.411	1.072	402.57	248.12	262.7	378.9	382.9217191	379.4110717	289.9011913	248.4562923	M8	-0.657142857	0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.502	358	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr9	39258136	39258136	A	C	ENSMUST00000076903.2	NA	ENSMUSG00000063380	missense	C/G	182	Olfr945	ENSMUST00000076903.2:c.544T>G	ENSMUSP00000076169.2:p.Cys182Gly	H-2-Kb	9	6	6	INHYFGDIL	INHYFCDIL	NetMHCpan	249.4	114.5	0.459	358	0.494	350.747	161.261	0.46	107.57	280.66	114.5	249.4	208.0223508	420.8332054	225.553723	456.2995075	M8	0.385714286	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.502	358	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr9	39018999	39018999	G	T	ENSMUST00000214410.1	5	ENSMUSG00000058820	missense	L/I	181	Olfr146	ENSMUST00000214410.1:c.541C>A	ENSMUSP00000149294.1:p.Leu181Ile	H-2-Kb	9	4	8	INHYFCDII	INHYFCDLI	NetMHC	329.69	127.26	0.386	309	0.217	436.374	256.697	0.588	127.26	329.69	183.7	356.2	329.6932077	516.547186	338.259498	521.4948213	M8	0.9	0.9	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.229	309	0	0	NA	9qA5.1	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr9	59324811	59324811	A	G	ENSMUST00000026265.7	1	ENSMUSG00000025235	missense	V/A	362	Bbs4	ENSMUST00000026265.7:c.1085T>C	ENSMUSP00000026265.6:p.Val362Ala	H-2-Kb	9	8	4	RAYAEAVRL	RAYVEAVRL	NetMHCpan	175.4	120.3	0.686	202	0.257	497.9	316.494	0.636	232.02	361.77	120.3	175.4	400.9682638	634.0302809	528.7495369	724.853099	M8	0.328571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.24	202	7	1	0.142857143	9qB	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chr9	43791318	43791318	A	G	ENSMUST00000034510.8	1	ENSMUSG00000032012	missense	M/V	121	Nectin1	ENSMUST00000034510.8:c.361A>G	ENSMUSP00000034510.7:p.Met121Val	H-2-Kb	9	11	1	VYICEFATF	MYICEFATF	SMM	270.464	693.601	2.564	104	0.308	347.49	830.945	2.391	915.58	403.74	908.1	406.8	693.6014622	270.4643321	753.7893549	291.2393144	M8	1.457142857	1.571428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.318	104	24	3	0.125	9qA5.1	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chrX	133588496	133588496	A	G	ENSMUST00000149154.7	1	ENSMUSG00000051323	missense	M/T	977	Pcdh19	ENSMUST00000149154.7:c.2930T>C	ENSMUSP00000116886.1:p.Met977Thr	H-2-Db	9	5	7	WMPRNPTPT	WMPRNPMPT	NetMHC	233.44	1377.14	5.899	42	0.548	363.988	1119.682	3.076	1377.14	233.44	3001.1	2034.1	862.223787	394.1123099	717.0839465	333.8643134	M8	-2.028571429	-1.557142857	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.528	42	2	2	1	XqE3	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	sgMsh2	cell line
chrX	101258606	101258606	AG	A	ENSMUST00000062000.5	1	ENSMUSG00000042903	FS	G/X	295	Foxo4	ENSMUST00000062000.5:c.889del	ENSMUSP00000059420.4:p.Val297SerfsTer9	H-2-Kb	8	7	7	SSYAGGSL	SSYAGGVP	NetMHC	51.75	25173.44	486.443	42	0.619	64.29	6675.505	103.834	25173.44	51.75	10455.4	66.1	2855.880296	68.82401428	2895.609548	62.47985313	M8	0.271428571	0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.643	42	25	7	0.28	XqD	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	sgMsh2	cell line
chrX	154948718	154948718	C	A	ENSMUST00000079867.5	NA	ENSMUSG00000094196	missense	R/M	263	Magea3	ENSMUST00000079867.5:c.788G>T	ENSMUSP00000078793.4:p.Arg263Met	H-2-Kb	8	4	8	YGFLWGPM	YGFLWGPR	NetMHCpan	35.4	3297.2	93.141	259	0.486	101.633	2138.052	21.037	6921.5	82	3297.2	35.4	941.3258822	168.9429215	978.9037676	121.2662646	M8	0.742857143	0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.481	259	0	0	NA	XqF3	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	sgMsh2	cell line
chrX	13665387	13665387	T	C	ENSMUST00000053659.1	1	ENSMUSG00000047678	missense	V/A	58	Gpr82	ENSMUST00000053659.1:c.173T>C	ENSMUSP00000062535.1:p.Val58Ala	H-2-Kb	8	8	4	ANLATANL	ANLVTANL	NetMHC	110.98	65.42	0.589	145	0.483	127.103	105.176	0.827	65.42	110.98	97.7	151.4	116.611129	121.5458122	112.6522836	132.6600022	M8	0.5	0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.499	145	0	0	NA	XqA1.1	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	sgMsh2	cell line
chr9	108052065	108052065	A	G	ENSMUST00000162355.7	1	ENSMUSG00000041528	missense	V/A	1271	Rnf123	ENSMUST00000162355.7:c.3812T>C	ENSMUSP00000125745.1:p.Val1271Ala	H-2-Kb	8	8	4	ISAAFQPC	ISAVFQPC	SMM	176.092	168.943	0.959	201	0.264	417.672	294.935	0.706	357.2	561.35	396.1	585.7	168.9429215	176.0921516	232.6697911	273.9933359	M8	0.428571429	0.714285714	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.261	201	23	5	0.217391304	9qF1	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	sgMsh2	cell line
chrX	86747655	86747655	G	A	ENSMUST00000113966.7	5	ENSMUSG00000052372	missense	P/S	560	Il1rapl1	ENSMUST00000113966.7:c.1678C>T	ENSMUSP00000109599.1:p.Pro560Ser	H-2-Kb	9	10	2	MSFKRIEPI	MPFKRIEPI	NetMHCpan	58.3	2180.6	37.403	94	0.511	177.366	2262.711	12.757	4631.31	173.91	2180.6	58.3	2344.822647	233.4049166	1946.480243	180.8214719	M8	-0.242857143	-0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.504	94	0	0	NA	XqC1	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	sgMsh2	cell line
chrX	9849913	9849913	T	C	ENSMUST00000057113.2	NA	ENSMUSG00000048994	missense	S/P	55	H2al3	ENSMUST00000057113.2:c.163T>C	ENSMUSP00000052025.1:p.Ser55Pro	H-2-Kb	9	6	6	LNYVTPSIL	LNYVTSSIL	SMM	217.325	118.334	0.545	164	0.524	286.985	138.425	0.482	151.65	320.37	125.2	253.6	118.334124	217.325156	242.8007366	383.9281887	M8	1.157142857	1.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.499	164	0	0	NA	XqA1.1	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	sgMsh2	cell line
chrX	101673545	101673545	GA	G	ENSMUST00000044475.4	1	ENSMUSG00000034160	FS	K/X	757	Ogt	ENSMUST00000044475.4:c.2271del	ENSMUSP00000045409.4:p.Lys757AsnfsTer23	H-2-Kb	9	22	0	VTQLLICPL	NA	NetMHCpan	324.4	NA	NA	98	0.429	478.008	NA	NA	NA	401.25	NA	324.4	NA	554.7662088	NA	602.9065471	M8	1.9	2.085714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.432	98	86	0	0	XqD	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	sgMsh2	cell line
chr13	61163210	61163210	T	C	ENSMUST00000021889.5	1	ENSMUSG00000055679	missense	I/M	7	Ctsr	ENSMUST00000021889.5:c.21A>G	ENSMUSP00000021889.4:p.Ile7Met	H-2-Db	9	2	6	AAVVFMAFL	AAVVFIAFL	NetMHC	144.33	271	1.878	141	0.227	237.526	340.933	1.435	271	144.33	1476.4	1418.5	347.2322064	243.0076804	334.6339501	232.0438166	PW1766T2	3.071428571	3.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.24	141	0	0	NA	13qB2	chr13-3556909-119495179	3	2	1	0.722	2.8285978	NA	1	0.940254116	sgMsh2 aCD4/8	autochthonous
chr1	94024443	94024443	C	T	ENSMUST00000190212.6	1	ENSMUSG00000034000	missense	A/V	178	Neu4	ENSMUST00000190212.6:c.533C>T	ENSMUSP00000140127.1:p.Ala178Val	H-2-Db	9	5	7	AALQDWVTF	AALQDWATF	NetMHC	358.44	405.5	1.131	137	0.182	430.644	381.621	0.886	405.5	358.44	586	674	341.6803474	435.1309752	357.7420571	426.1573665	PW1766T2	0.314285714	0.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.174	137	0	0	NA	1qD	chr1-4867294-195062457	4	2	2	0.722	2.8285978	NA	1	0.681684234	sgMsh2 aCD4/8	autochthonous
chr12	55747146	55747146	A	C	ENSMUST00000085385.6	1	ENSMUSG00000021027	missense	V/G	568	Ralgapa1	ENSMUST00000085385.6:c.1703T>G	ENSMUSP00000082503.5:p.Val568Gly	H-2-Kb	8	5	7	NIYRYMGV	NIYRYMVV	NetMHC	9.51	58.95	6.199	212	0.061	45.121	74.529	1.652	58.95	9.51	74.8	50	74.25744462	41.85429201	89.89592386	48.38825938	PW1766T2	0.442857143	0.442857143	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.068	212	13	1	0.076923077	12qC1	chr12-3237715-103766264	3	2	1	0.722	2.8285978	NA	1	0.266405333	sgMsh2 aCD4/8	autochthonous
chr13	61163210	61163210	T	C	ENSMUST00000021889.5	1	ENSMUSG00000055679	missense	I/M	7	Ctsr	ENSMUST00000021889.5:c.21A>G	ENSMUSP00000021889.4:p.Ile7Met	H-2-Kb	8	7	1	MAFLYLGV	IAFLYLGV	NetMHCpan	13.8	7	0.507	141	0.227	21.638	10.79	0.499	6.5	14.12	7	13.8	14.5794117	29.15680954	14.71431334	31.96980594	PW1766T2	2.1	2.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.24	141	0	0	NA	13qB2	chr13-3556909-119495179	3	2	1	0.722	2.8285978	NA	1	0.940254116	sgMsh2 aCD4/8	autochthonous
chr1	185394387	185394387	T	C	ENSMUST00000046514.12	1	ENSMUSG00000026615	missense	Y/H	507	Eprs	ENSMUST00000046514.12:c.1519T>C	ENSMUSP00000045841.7:p.Tyr507His	H-2-Kb	8	7	5	VAPRHVAL	VAPRYVAL	NetMHC	21.46	4.5	0.21	349	0.026	69.926	14.685	0.21	4.5	21.46	11.1	69.1	18.27006111	70.75220838	22.78977303	98.56892043	PW1766T2	0.328571429	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.032	349	181	7	0.038674033	1qH5	chr1-4867294-195062457	4	2	2	0.722	2.8285978	NA	1	0.125367216	sgMsh2 aCD4/8	autochthonous
chr13	61163210	61163210	T	C	ENSMUST00000021889.5	1	ENSMUSG00000055679	missense	I/M	7	Ctsr	ENSMUST00000021889.5:c.21A>G	ENSMUSP00000021889.4:p.Ile7Met	H-2-Kb	8	5	3	VFMAFLYL	VFIAFLYL	SMM	17.328	11.715	0.676	141	0.227	21.938	19.786	0.902	24.27	25.48	73.8	48	11.71493815	17.32766328	15.30171117	18.39670312	PW1766T2	2.228571429	2.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.24	141	0	0	NA	13qB2	chr13-3556909-119495179	3	2	1	0.722	2.8285978	NA	1	0.940254116	sgMsh2 aCD4/8	autochthonous
chr12	73967975	73967975	CT	C	ENSMUST00000021532.5	1	ENSMUSG00000021113	FS	F/X	85	Snapc1	ENSMUST00000021532.5:c.257del	ENSMUSP00000021532.4:p.Leu86CysfsTer35	H-2-Kb	8	6	7	LAWRYFCL	LAWRYFLP	NetMHC	35.1	3413.15	97.241	194	0.191	42.677	1139.195	26.693	3413.15	35.1	1292.7	40.3	985.6892043	68.66572344	766.9022289	45.05468939	PW1766T2	0.6	0.6	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.184	194	43	9	0.209302326	12qC3	chr12-3237715-103766264	3	2	1	0.722	2.8285978	NA	1	0.720861489	sgMsh2 aCD4/8	autochthonous
chr12	35132174	35132174	AT	A	ENSMUST00000048519.16	1	ENSMUSG00000020590	FS	F/X	741	Snx13	ENSMUST00000048519.16:c.2226del	ENSMUSP00000038430.9:p.Phe742LeufsTer6	H-2-Kb	8	9	4	QSFLRSLL	NA	NetMHCpan	63.7	NA	NA	198	0.066	138.284	NA	NA	NA	64.37	NA	63.7	NA	212.1973715	NA	250.4609364	PW1766T2	1.157142857	1.157142857	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.067	198	84	0	0	12qA3	chr12-3237715-103766264	3	2	1	0.722	2.8285978	NA	1	0.262487607	sgMsh2 aCD4/8	autochthonous
chr1	158765036	158765036	CG	C	ENSMUST00000159861.8	5	ENSMUSG00000073530	FS	P/X	1590	Pappa2	ENSMUST00000159861.8:c.4770del	ENSMUSP00000124022.2:p.Val1591TrpfsTer68	H-2-Kb	8	14	0	VSLLLRCL	NA	NetMHC	84.39	NA	NA	118	0.186	90.732	NA	NA	NA	84.39	NA	149.6	NA	89.89592386	NA	91.56721386	PW1766T2	1.771428571	1.828571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.203	118	0	0	NA	1qH1	chr1-4867294-195062457	4	2	2	0.722	2.8285978	NA	1	0.795298273	sgMsh2 aCD4/8	autochthonous
chr1	158765036	158765036	CG	C	ENSMUST00000159861.8	5	ENSMUSG00000073530	FS	P/X	1590	Pappa2	ENSMUST00000159861.8:c.4770del	ENSMUSP00000124022.2:p.Val1591TrpfsTer68	H-2-Kb	8	9	4	CVPWFVSL	NA	NetMHCpan	47.2	NA	NA	118	0.186	126.645	NA	NA	NA	87.43	NA	47.2	NA	165.8593656	NA	229.4774419	PW1766T2	1.671428571	1.671428571	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.203	118	0	0	NA	1qH1	chr1-4867294-195062457	4	2	2	0.722	2.8285978	NA	1	0.795298273	sgMsh2 aCD4/8	autochthonous
chr1	66695534	66695534	T	A	ENSMUST00000061620.16	1	ENSMUSG00000055567	missense	F/I	3307	Unc80	ENSMUST00000061620.16:c.9919T>A	ENSMUSP00000053692.9:p.Phe3307Ile	H-2-Kb	8	11	1	ITFTPPEL	FTFTPPEL	NetMHCpan	94.4	511.8	5.422	135	0.104	139.537	529.874	3.797	921.21	152.61	511.8	94.4	437.2602513	128.1563117	547.948825	150.9176382	PW1766T2	-0.214285714	-0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.115	135	0	0	NA	1qC3	chr1-4867294-195062457	4	2	2	0.722	2.8285978	NA	1	0.450538431	sgMsh2 aCD4/8	autochthonous
chr12	87464649	87464649	GC	G	ENSMUST00000021428.8	1	ENSMUSG00000021039	FS	G/X	77	Snw1	ENSMUST00000021428.8:c.231del	ENSMUSP00000021428.7:p.Arg78GlufsTer48	H-2-Kb	8	44	0	RSFTANTL	NA	SMM	128.156	NA	NA	95	0.221	164.081	NA	NA	NA	173.73	NA	178.6	NA	128.1563117	NA	154.4329616	PW1766T2	0.385714286	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.233	95	188	1	0.005319149	12qD2	chr12-3237715-103766264	3	2	1	0.722	2.8285978	NA	1	0.912830038	sgMsh2 aCD4/8	autochthonous
chr1	163825775	163825775	A	T	ENSMUST00000027877.6	1	ENSMUSG00000026585	missense	K/M	310	Kifap3	ENSMUST00000027877.6:c.929A>T	ENSMUSP00000027877.5:p.Lys310Met	H-2-Kb	8	6	6	VHMLVMAL	VHMLVKAL	NetMHC	202.09	1083.89	5.363	200	0.06	268.022	757.823	2.827	1083.89	202.09	766.2	241.1	749.4454029	294.9442949	709.1530907	341.7747702	PW1766T2	2.028571429	2.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.059	200	68	2	0.029411765	1qH2.1	chr1-4867294-195062457	4	2	2	0.722	2.8285978	NA	1	0.231145804	sgMsh2 aCD4/8	autochthonous
chr12	87464649	87464649	GC	G	ENSMUST00000021428.8	1	ENSMUSG00000021039	FS	G/X	77	Snw1	ENSMUST00000021428.8:c.231del	ENSMUSP00000021428.7:p.Arg78GlufsTer48	H-2-Kb	8	51	0	LTWFLRRL	NA	NetMHCpan	75.1	NA	NA	95	0.221	147.962	NA	NA	NA	217.38	NA	75.1	NA	168.9429215	NA	126.9813676	PW1766T2	-0.028571429	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.233	95	188	1	0.005319149	12qD2	chr12-3237715-103766264	3	2	1	0.722	2.8285978	NA	1	0.912830038	sgMsh2 aCD4/8	autochthonous
chr1	74605396	74605396	C	T	ENSMUST00000087183.10	5	ENSMUSG00000033276	missense	A/V	104	Stk36	ENSMUST00000087183.10:c.311C>T	ENSMUSP00000084430.4:p.Ala104Val	H-2-Kb	8	9	3	VQVIAAQL	VQAIAAQL	SMMPMBEC	303.208	588.491	1.941	160	0.144	331.171	799.696	2.415	1356.52	350.64	1010.9	513.7	463.16955	311.7022951	588.4912366	303.2075422	PW1766T2	1.3	1.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.149	160	4	0	0	1qC3	chr1-4867294-195062457	4	2	2	0.722	2.8285978	NA	1	0.583741097	sgMsh2 aCD4/8	autochthonous
chr10	100472025	100472025	T	C	ENSMUST00000058154.14	1	ENSMUSG00000036676	missense	T/A	177	Tmtc3	ENSMUST00000058154.14:c.529A>G	ENSMUSP00000061470.8:p.Thr177Ala	H-2-Kb	8	6	6	NSIVWAPI	NSIVWTPI	NetMHCpan	259.2	487.3	1.88	132	0.288	354.052	1040.459	2.939	1677.14	434.11	487.3	259.2	1281.563117	448.476819	799.3555598	273.9933359	PW1766T2	1.671428571	1.671428571	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.292	132	17	1	0.058823529	10qD1	chr10-4453448-130453386	2	1	1	0.722	2.8285978	NA	1	1	sgMsh2 aCD4/8	autochthonous
chr11	119436455	119436455	A	G	ENSMUST00000093902.11	5	ENSMUSG00000070327	missense	H/R	1757	Rnf213	ENSMUST00000093902.11:c.5270A>G	ENSMUSP00000091429.5:p.His1757Arg	H-2-Kb	8	6	6	SAFLPRCL	SAFLPHCL	SMM	279.087	309.557	1.109	91	0.11	354.521	338.31	0.954	377.74	459.46	265.3	383.4	309.5565516	279.0872523	367.0624846	325.64169	PW1766T2	1.228571429	1.228571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.115	91	2	1	0.5	11qE2	chr11-69590981-121956879	2	1	1	0.722	2.8285978	NA	1	0.450538431	sgMsh2 aCD4/8	autochthonous
chr13	61163210	61163210	T	C	ENSMUST00000021889.5	1	ENSMUSG00000055679	missense	I/M	7	Ctsr	ENSMUST00000021889.5:c.21A>G	ENSMUSP00000021889.4:p.Ile7Met	H-2-Kb	8	3	5	AVVFMAFL	AVVFIAFL	NetMHCpan	194.8	292.4	1.501	141	0.227	288.95	813.202	2.814	1250.16	473.9	292.4	194.8	941.3258822	303.9065077	685.0779666	273.9933359	PW1766T2	3.071428571	3.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.24	141	0	0	NA	13qB2	chr13-3556909-119495179	3	2	1	0.722	2.8285978	NA	1	0.940254116	sgMsh2 aCD4/8	autochthonous
chr1	158765036	158765036	CG	C	ENSMUST00000159861.8	5	ENSMUSG00000073530	FS	P/X	1590	Pappa2	ENSMUST00000159861.8:c.4770del	ENSMUSP00000124022.2:p.Val1591TrpfsTer68	H-2-Kb	8	46	0	KGFPSSAL	NA	SMM	259.263	NA	NA	118	0.186	439.806	NA	NA	NA	527.66	NA	508.3	NA	259.2626764	NA	371.3128679	PW1766T2	0.685714286	0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.203	118	0	0	NA	1qH1	chr1-4867294-195062457	4	2	2	0.722	2.8285978	NA	1	0.795298273	sgMsh2 aCD4/8	autochthonous
chr10	128388942	128388942	T	C	ENSMUST00000014642.9	1	ENSMUSG00000014498	missense	F/L	816	Ankrd52	ENSMUST00000014642.9:c.2446T>C	ENSMUSP00000014642.3:p.Phe816Leu	H-2-Kb	8	4	8	LLLEHSPL	LLLEHSPF	SMMPMBEC	348.129	4372.603	12.56	245	0.024	387.904	5016.311	12.932	5660.02	589.79	1659.8	407.9	5980.534499	367.908651	4372.602513	348.1288376	PW1766T2	0.328571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.027	245	21	0	0	10qD3	chr10-4453448-130453386	2	1	1	0.722	2.8285978	NA	1	0.105778588	sgMsh2 aCD4/8	autochthonous
chr1	158765036	158765036	CG	C	ENSMUST00000159861.8	5	ENSMUSG00000073530	FS	P/X	1590	Pappa2	ENSMUST00000159861.8:c.4770del	ENSMUSP00000124022.2:p.Val1591TrpfsTer68	H-2-Kb	8	10	3	VPWFVSLL	NA	NetMHCpan	247.3	NA	NA	118	0.186	337.927	NA	NA	NA	916.45	NA	247.3	NA	320.4350395	NA	355.4184757	PW1766T2	1.614285714	1.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.203	118	0	0	NA	1qH1	chr1-4867294-195062457	4	2	2	0.722	2.8285978	NA	1	0.795298273	sgMsh2 aCD4/8	autochthonous
chr1	185394387	185394387	T	C	ENSMUST00000046514.12	1	ENSMUSG00000026615	missense	Y/H	507	Eprs	ENSMUST00000046514.12:c.1519T>C	ENSMUSP00000045841.7:p.Tyr507His	H-2-Kb	9	7	5	VAPRHVALL	VAPRYVALL	NetMHC	13.9	5.9	0.424	349	0.026	92.281	68.888	0.747	5.9	13.9	10.1	25.3	127.6762152	159.261206	136.2228619	171.0999962	PW1766T2	0.614285714	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.032	349	181	7	0.038674033	1qH5	chr1-4867294-195062457	4	2	2	0.722	2.8285978	NA	1	0.125367216	sgMsh2 aCD4/8	autochthonous
chr13	61163210	61163210	T	C	ENSMUST00000021889.5	1	ENSMUSG00000055679	missense	I/M	7	Ctsr	ENSMUST00000021889.5:c.21A>G	ENSMUSP00000021889.4:p.Ile7Met	H-2-Kb	9	4	4	VVFMAFLYL	VVFIAFLYL	NetMHC	15.78	18.61	1.179	141	0.227	30.148	37.26	1.236	18.61	15.78	33.3	20.2	41.22019102	40.09682638	51.07989549	49.5735477	PW1766T2	2.228571429	3.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.24	141	0	0	NA	13qB2	chr13-3556909-119495179	3	2	1	0.722	2.8285978	NA	1	0.940254116	sgMsh2 aCD4/8	autochthonous
chr13	61163210	61163210	T	C	ENSMUST00000021889.5	1	ENSMUSG00000055679	missense	I/M	7	Ctsr	ENSMUST00000021889.5:c.21A>G	ENSMUSP00000021889.4:p.Ile7Met	H-2-Kb	9	2	6	AAVVFMAFL	AAVVFIAFL	NetMHC	19.26	33.76	1.753	141	0.227	147.141	181.663	1.235	33.76	19.26	89.1	68.8	274.2268658	225.4810248	298.0231495	228.6914879	PW1766T2	3.071428571	3.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.24	141	0	0	NA	13qB2	chr13-3556909-119495179	3	2	1	0.722	2.8285978	NA	1	0.940254116	sgMsh2 aCD4/8	autochthonous
chr12	55747146	55747146	A	C	ENSMUST00000085385.6	1	ENSMUSG00000021027	missense	V/G	568	Ralgapa1	ENSMUST00000085385.6:c.1703T>G	ENSMUSP00000082503.5:p.Val568Gly	H-2-Kb	9	4	8	LNIYRYMGV	LNIYRYMVV	NetMHC	22.36	120.2	5.376	212	0.061	69.903	118.609	1.697	120.2	22.36	87.3	47.1	141.6152424	92.70646046	117.0172803	94.02644145	PW1766T2	0.442857143	0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.068	212	13	1	0.076923077	12qC1	chr12-3237715-103766264	3	2	1	0.722	2.8285978	NA	1	0.266405333	sgMsh2 aCD4/8	autochthonous
chr11	107042747	107042747	C	A	ENSMUST00000057892.14	5	ENSMUSG00000040481	missense	A/S	2824	Bptf	ENSMUST00000057892.14:c.8470G>T	ENSMUSP00000052303.8:p.Ala2824Ser	H-2-Kb	9	10	2	MSWPFLEPV	MAWPFLEPV	NetMHC	46.25	96.28	2.082	119	0.193	160.596	204.138	1.271	96.28	46.25	117.8	81.8	290.4758291	239.3922023	323.0353127	256.5960697	PW1766T2	0.457142857	0.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.204	119	66	10	0.151515152	11qE1	chr11-69590981-121956879	2	1	1	0.722	2.8285978	NA	1	0.799215999	sgMsh2 aCD4/8	autochthonous
chr1	158765036	158765036	CG	C	ENSMUST00000159861.8	5	ENSMUSG00000073530	FS	P/X	1590	Pappa2	ENSMUST00000159861.8:c.4770del	ENSMUSP00000124022.2:p.Val1591TrpfsTer68	H-2-Kb	9	9	4	CVPWFVSLL	NA	NetMHC	73.25	NA	NA	118	0.186	188.958	NA	NA	NA	73.25	NA	83.4	NA	294.5167504	NA	533.6419961	PW1766T2	1.614285714	1.671428571	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.203	118	0	0	NA	1qH1	chr1-4867294-195062457	4	2	2	0.722	2.8285978	NA	1	0.795298273	sgMsh2 aCD4/8	autochthonous
chr11	22518498	22518498	A	G	ENSMUST00000059319.7	1	ENSMUSG00000049904	missense	I/V	146	Tmem17	ENSMUST00000059319.7:c.436A>G	ENSMUSP00000051414.7:p.Ile146Val	H-2-Kb	9	8	4	IHIVFTIFL	IHIIFTIFL	NetMHCpan	194.1	234	1.206	166	0.337	246.86	296.981	1.203	273.15	210.51	234	194.1	342.8546153	283.2109234	320.8115533	326.0243217	PW1766T2	3.128571429	3.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.34	166	11	8	0.727272727	11qA3.2	chr11-3133205-69579350	2	1	1	0.722	2.8285978	NA	1	1	sgMsh2 aCD4/8	autochthonous
chr10	129857079	129857079	G	A	ENSMUST00000204622.2	5	ENSMUSG00000052818	missense	C/Y	187	Olfr813	ENSMUST00000204622.2:c.560G>A	ENSMUSP00000145260.2:p.Cys187Tyr	H-2-Kb	9	9	3	ISYTDTSTL	ISCTDTSTL	NetMHCpan	90.1	4803.8	53.316	391	0.123	183.621	3542.36	19.292	6452.21	224.53	4803.8	90.1	2280.91972	200.0368468	1200.189989	167.2052848	PW1766T2	-0.557142857	-0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.129	391	0	0	NA	10qD3	chr10-4453448-130453386	2	1	1	0.722	2.8285978	NA	1	0.505386588	sgMsh2 aCD4/8	autochthonous
chr1	163825775	163825775	A	T	ENSMUST00000027877.6	1	ENSMUSG00000026585	missense	K/M	310	Kifap3	ENSMUST00000027877.6:c.929A>T	ENSMUSP00000027877.5:p.Lys310Met	H-2-Kb	9	5	7	IVHMLVMAL	IVHMLVKAL	NetMHCpan	189.9	404.5	2.13	200	0.06	420.337	738.326	1.757	534.22	229.38	404.5	189.9	1127.482994	693.6014622	942.4319478	611.2938126	PW1766T2	2.028571429	2.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.059	200	68	2	0.029411765	1qH2.1	chr1-4867294-195062457	4	2	2	0.722	2.8285978	NA	1	0.231145804	sgMsh2 aCD4/8	autochthonous
chr12	80666660	80666660	G	T	ENSMUST00000085245.6	1	ENSMUSG00000048833	missense	V/L	111	Slc39a9	ENSMUST00000085245.6:c.331G>T	ENSMUSP00000082343.5:p.Val111Leu	H-2-Kb	9	3	9	TQLHAYIGL	TQLHAYIGV	NetMHC	261.45	951.96	3.641	199	0.261	457.543	1345.848	2.941	951.96	261.45	1614.2	339.5	1294.523683	575.5857057	1397.172407	624.0939895	PW1766T2	1.285714286	1.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.274	199	29	7	0.24137931	12qC3	chr12-3237715-103766264	3	2	1	0.722	2.8285978	NA	1	1	sgMsh2 aCD4/8	autochthonous
chr11	98970530	98970530	A	C	ENSMUST00000068133.9	1	ENSMUSG00000037992	missense	D/A	223	Rara	ENSMUST00000068133.9:c.668A>C	ENSMUSP00000069744.3:p.Asp223Ala	H-2-Kb	9	11	1	ALWDKFSEL	DLWDKFSEL	NetMHCpan	218.9	1913.3	8.741	71	0.324	315.115	1560.905	4.953	2593.53	291.97	1913.3	218.9	1191.543769	422.7756832	1208.509309	338.259498	PW1766T2	-0.857142857	-0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.298	71	85	38	0.447058824	11qD	chr11-69590981-121956879	2	1	1	0.722	2.8285978	NA	1	1	sgMsh2 aCD4/8	autochthonous
chr11	22518498	22518498	A	G	ENSMUST00000059319.7	1	ENSMUSG00000049904	missense	I/V	146	Tmem17	ENSMUST00000059319.7:c.436A>G	ENSMUSP00000051414.7:p.Ile146Val	H-2-Kb	9	10	2	IVFTIFLTF	IIFTIFLTF	SMMPMBEC	158.581	161.529	1.019	166	0.337	169.364	186.632	1.102	378.24	317.15	192.5	163.7	180.7631913	175.0289954	161.5288124	158.5805793	PW1766T2	2.185714286	3.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.34	166	11	8	0.727272727	11qA3.2	chr11-3133205-69579350	2	1	1	0.722	2.8285978	NA	1	1	sgMsh2 aCD4/8	autochthonous
chr11	102308274	102308274	G	A	ENSMUST00000174302.7	5	ENSMUSG00000020923	missense	S/F	557	Ubtf	ENSMUST00000174302.7:c.1670C>T	ENSMUSP00000133844.1:p.Ser557Phe	H-2-Kb	9	9	3	TNFSKKMKF	TNSSKKMKF	SMMPMBEC	283.302	2456.122	8.67	64	0.328	319.45	4322.379	13.531	5964.91	352.41	11409.2	407.3	2679.847002	286.4903513	2456.122367	283.3022345	PW1766T2	-0.714285714	-0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.315	64	216	82	0.37962963	11qD	chr11-69590981-121956879	2	1	1	0.722	2.8285978	NA	1	1	sgMsh2 aCD4/8	autochthonous
chr1	158765036	158765036	CG	C	ENSMUST00000159861.8	5	ENSMUSG00000073530	FS	P/X	1590	Pappa2	ENSMUST00000159861.8:c.4770del	ENSMUSP00000124022.2:p.Val1591TrpfsTer68	H-2-Kb	9	8	5	SCVPWFVSL	NA	NetMHCpan	134.2	NA	NA	118	0.186	393.846	NA	NA	NA	425.24	NA	134.2	NA	563.7804345	NA	362.4515823	PW1766T2	1.671428571	1.671428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.203	118	0	0	NA	1qH1	chr1-4867294-195062457	4	2	2	0.722	2.8285978	NA	1	0.795298273	sgMsh2 aCD4/8	autochthonous
chr1	125584489	125584489	C	A	ENSMUST00000027580.10	1	ENSMUSG00000026342	missense	A/D	342	Slc35f5	ENSMUST00000027580.10:c.1025C>A	ENSMUSP00000027580.4:p.Ala342Asp	H-2-Kb	9	8	4	MFYDVYIVM	MFYAVYIVM	SMM	226.001	252.412	1.117	192	0.161	460.337	622.756	1.353	993.1	734.21	1433	694.6	252.4120012	226.0008122	251.9126636	226.073678	PW1766T2	1.242857143	1.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.175	192	92	10	0.108695652	1qE2.3	chr1-4867294-195062457	4	2	2	0.722	2.8285978	NA	1	0.68560196	sgMsh2 aCD4/8	autochthonous
chr10	128388942	128388942	T	C	ENSMUST00000014642.9	1	ENSMUSG00000014498	missense	F/L	816	Ankrd52	ENSMUST00000014642.9:c.2446T>C	ENSMUSP00000014642.3:p.Phe816Leu	H-2-Kb	9	11	1	LSYLEGNPF	FSYLEGNPF	SMM	318.5	327.424	1.028	245	0.024	414.973	466.597	1.124	763.05	782.05	493.4	446.9	327.4236157	318.5004131	439.7947088	383.0451784	PW1766T2	-0.528571429	-0.271428571	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;Vardict	3	0.027	245	21	0	0	10qD3	chr10-4453448-130453386	2	1	1	0.722	2.8285978	NA	1	0.105778588	sgMsh2 aCD4/8	autochthonous
chr15	97795765	97795765	C	T	ENSMUST00000116409.8	1	ENSMUSG00000022475	missense	A/T	888	Hdac7	ENSMUST00000116409.8:c.2662G>A	ENSMUSP00000112110.2:p.Ala888Thr	H-2-Db	9	4	8	SAIRSLETV	SAIRSLEAV	NetMHC	27.2	70.17	2.58	108	0.056	118.732	204.536	1.723	70.17	27.2	89.5	42.2	330.0806	195.2630191	319.5729414	198.4129435	PW1766T2	0.428571429	0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.062	108	52	3	0.057692308	15qF1	chr15-63776367-103351732	3	2	1	0.722	2.8285978	NA	1	0.24289898	sgMsh2 aCD4/8	autochthonous
chr17	20481101	20481101	C	T	ENSMUST00000167314.2	5	ENSMUSG00000091805	missense	A/T	46	Vmn2r108	ENSMUST00000167314.2:c.136G>A	ENSMUSP00000130373.1:p.Ala46Thr	H-2-Kb	8	8	4	VIGTFFPL	VIGAFFPL	SMMPMBEC	14.149	15.515	1.096	187	0.123	16.837	18.076	1.074	20.13	17.98	31	27.2	16.0228586	15.69422953	15.51457917	14.14946437	PW1766T2	1.6	1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.128	187	0	0	NA	17qA3.2	chr17-3505882-94834206	3	2	1	0.722	2.8285978	NA	1	0.501468862	sgMsh2 aCD4/8	autochthonous
chr17	19531368	19531368	G	A	ENSMUST00000166081.2	5	ENSMUSG00000091859	missense	A/T	621	Vmn2r100	ENSMUST00000166081.2:c.1861G>A	ENSMUSP00000128350.1:p.Ala621Thr	H-2-Kb	8	10	2	RTLSYILL	RALSYILL	NetMHC	43.72	44.24	1.012	526	0.013	53.299	69.404	1.302	44.24	43.72	43.9	45.4	94.56708451	61.19839043	104.6501849	66.18201718	PW1766T2	1.871428571	1.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.016	526	0	0	NA	17qA3.2	chr17-3505882-94834206	3	2	1	0.722	2.8285978	NA	1	0.062683608	sgMsh2 aCD4/8	autochthonous
chr17	19694032	19694032	G	A	ENSMUST00000171741.2	5	ENSMUSG00000095961	missense	A/T	620	Vmn2r102	ENSMUST00000171741.2:c.1858G>A	ENSMUSP00000126559.1:p.Ala620Thr	H-2-Kb	8	10	2	RTLSYILL	RALSYILL	NetMHC	43.72	44.24	1.012	493	0.03	53.299	69.404	1.302	44.24	43.72	43.9	45.4	94.56708451	61.19839043	104.6501849	66.18201718	PW1766T2	1.871428571	1.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.03	493	0	0	NA	17qA3.2	chr17-3505882-94834206	3	2	1	0.722	2.8285978	NA	1	0.117531765	sgMsh2 aCD4/8	autochthonous
chr19	11550302	11550302	T	G	ENSMUST00000025581.6	1	ENSMUSG00000024678	missense	L/V	58	Ms4a4d	ENSMUST00000025581.6:c.172T>G	ENSMUSP00000025581.6:p.Leu58Val	H-2-Kb	8	4	8	IAFINFSV	IAFINFSL	NetMHC	47.23	14.34	0.304	67	0.045	143.835	40.525	0.282	14.34	47.23	19	62.9	69.30107956	247.5939338	62.04974485	224.7708563	PW1766T2	1.685714286	1.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.06	67	0	0	NA	19qA	chr19-3600535-61225035	3	2	1	0.722	2.8285978	NA	1	0.235063529	sgMsh2 aCD4/8	autochthonous
chr16	56035158	56035158	G	A	ENSMUST00000059052.8	1	ENSMUSG00000044763	missense	S/F	38	Trmt10c	ENSMUST00000059052.8:c.113C>T	ENSMUSP00000058954.8:p.Ser38Phe	H-2-Kb	8	9	3	MSFKAPSL	MSSKAPSL	NetMHCpan	33.8	2538.7	75.109	212	0.203	60.749	2252.704	37.082	6004.15	59.59	2538.7	33.8	1624.575876	61.9070344	1966.708524	73.23859428	PW1766T2	0.185714286	0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.212	212	121	46	0.380165289	16qC1.1	chr16-3948854-96819699	3	2	1	0.722	2.8285978	NA	1	0.830557803	sgMsh2 aCD4/8	autochthonous
chr2	37005429	37005429	G	T	ENSMUST00000216437.1	5	ENSMUSG00000075379	missense	L/I	62	Olfr358	ENSMUST00000216437.1:c.184C>A	ENSMUSP00000150781.1:p.Leu62Ile	H-2-Kb	8	5	7	QTPMYFIL	QTPMYFLL	NetMHCpan	112.8	64.1	0.568	305	0.023	265.721	121.94	0.459	54.18	142.63	64.1	112.8	179.7794304	388.8123042	223.2235446	554.2937734	PW1766T2	1.342857143	1.342857143	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.029	305	0	0	NA	2qB	chr2-4896529-181649133	3	2	1	0.722	2.8285978	NA	1	0.113614039	sgMsh2 aCD4/8	autochthonous
chr2	86733105	86733105	C	A	ENSMUST00000214317.1	NA	ENSMUSG00000111711	missense	C/F	169	Olfr1089	ENSMUST00000214317.1:c.506G>T	ENSMUSP00000149509.1:p.Cys169Phe	H-2-Kb	8	8	4	LSFFSYNI	LSFCSYNI	NetMHCpan	31.9	97.1	3.044	183	0.251	179.645	288.55	1.606	264.68	142.65	97.1	31.9	312.4208431	216.6406749	340.2044578	230.0064421	PW1766T2	0.528571429	0.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.255	183	0	0	NA	2qD	chr2-4896529-181649133	3	2	1	0.722	2.8285978	NA	1	0.999019999	sgMsh2 aCD4/8	autochthonous
chr2	37005429	37005429	G	T	ENSMUST00000216437.1	5	ENSMUSG00000075379	missense	L/I	62	Olfr358	ENSMUST00000216437.1:c.184C>A	ENSMUSP00000150781.1:p.Leu62Ile	H-2-Kb	8	8	4	MYFILSQL	MYFLLSQL	NetMHCpan	93.2	77.4	0.83	305	0.023	170.643	133.441	0.782	129.56	168.01	77.4	93.2	148.8469706	179.7794304	137.3219621	173.2766328	PW1766T2	1.328571429	1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.029	305	0	0	NA	2qB	chr2-4896529-181649133	3	2	1	0.722	2.8285978	NA	1	0.113614039	sgMsh2 aCD4/8	autochthonous
chr2	86733105	86733105	C	A	ENSMUST00000214317.1	NA	ENSMUSG00000111711	missense	C/F	169	Olfr1089	ENSMUST00000214317.1:c.506G>T	ENSMUSP00000149509.1:p.Cys169Phe	H-2-Kb	8	9	3	SFFSYNII	SFCSYNII	NetMHCpan	143.5	2645	18.432	183	0.251	173.61	2165.272	12.472	3058.66	188.46	2645	143.5	1385.925865	158.7596015	1685.543635	215.6453014	PW1766T2	1.285714286	1.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.255	183	0	0	NA	2qD	chr2-4896529-181649133	3	2	1	0.722	2.8285978	NA	1	0.999019999	sgMsh2 aCD4/8	autochthonous
chr2	88959221	88959221	C	T	ENSMUST00000215781.1	5	ENSMUSG00000048226	missense	P/S	252	Olfr1212	ENSMUST00000215781.1:c.754C>T	ENSMUSP00000149781.1:p.Pro252Ser	H-2-Kb	8	6	6	VSFFVSCI	VSFFVPCI	NetMHCpan	50.7	84.4	1.665	272	0.265	167.588	246.509	1.471	460.36	210.41	84.4	50.7	241.4015198	168.1666993	251.6170116	167.0090478	PW1766T2	2.171428571	2.171428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.261	272	0	0	NA	2qE1	chr2-4896529-181649133	3	2	1	0.722	2.8285978	NA	1	1	sgMsh2 aCD4/8	autochthonous
chr17	74427003	74427003	A	G	ENSMUST00000052124.8	1	ENSMUSG00000039193	missense	F/L	972	Nlrc4	ENSMUST00000052124.8:c.2914T>C	ENSMUSP00000059637.7:p.Phe972Leu	H-2-Kb	8	4	8	KQLVFFDL	KQLVFFDF	SMMPMBEC	179.366	2252.89	12.56	152	0.211	227.314	2649.48	11.656	3348.95	267.24	2072.2	340.7	3046.070846	187.3872337	2252.890066	179.3659491	PW1766T2	1.485714286	1.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.218	152	15	0	0	17qE2	chr17-3505882-94834206	3	2	1	0.722	2.8285978	NA	1	0.854064156	sgMsh2 aCD4/8	autochthonous
chr15	76283964	76283964	C	T	ENSMUST00000074173.3	1	ENSMUSG00000049653	missense	P/S	208	Spatc1	ENSMUST00000074173.3:c.622C>T	ENSMUSP00000073805.3:p.Pro208Ser	H-2-Kb	8	5	7	SSRLVGSL	SSRLVGPL	SMM	207.367	100.401	0.484	78	0.192	315.641	110.694	0.351	88	377.92	452.1	945.3	100.4014535	207.3671696	120.9873599	253.3611374	PW1766T2	0.757142857	0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.203	78	0	0	NA	15qD3	chr15-63776367-103351732	3	2	1	0.722	2.8285978	NA	1	0.795298273	sgMsh2 aCD4/8	autochthonous
chr15	55569110	55569110	C	T	ENSMUST00000022998.13	1	ENSMUSG00000022369	missense	A/V	271	Mtbp	ENSMUST00000022998.13:c.812C>T	ENSMUSP00000022998.7:p.Ala271Val	H-2-Kb	8	7	5	TNVSVYNL	TNVSAYNL	NetMHCpan	252.5	337.4	1.336	141	0.22	299.877	383.365	1.278	580.97	517.9	337.4	252.5	339.4220093	266.5262568	427.3069928	333.2268594	PW1766T2	0.442857143	0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.222	141	19	7	0.368421053	15qD1	chr15-3327923-60016847	3	2	1	0.722	2.8285978	NA	1	0.869735058	sgMsh2 aCD4/8	autochthonous
chr2	88959221	88959221	C	T	ENSMUST00000215781.1	5	ENSMUSG00000048226	missense	P/S	252	Olfr1212	ENSMUST00000215781.1:c.754C>T	ENSMUSP00000149781.1:p.Pro252Ser	H-2-Kb	8	10	2	VSCIFIYA	VPCIFIYA	SMMPMBEC	141.169	1015.64	7.194	272	0.265	395.314	4175.733	10.563	12082.19	617.75	7204	987.7	1147.46646	172.8781076	1015.640475	141.1692151	PW1766T2	2	2.342857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.261	272	0	0	NA	2qE1	chr2-4896529-181649133	3	2	1	0.722	2.8285978	NA	1	1	sgMsh2 aCD4/8	autochthonous
chr17	20481101	20481101	C	T	ENSMUST00000167314.2	5	ENSMUSG00000091805	missense	A/T	46	Vmn2r108	ENSMUST00000167314.2:c.136G>A	ENSMUSP00000130373.1:p.Ala46Thr	H-2-Kb	9	7	5	VVIGTFFPL	VVIGAFFPL	NetMHCpan	37	35.7	0.965	187	0.123	56.175	68.03	1.211	55.13	44.88	35.7	37	80.93008565	67.46988967	109.963866	98.23132453	PW1766T2	1.6	2.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.128	187	0	0	NA	17qA3.2	chr17-3505882-94834206	3	2	1	0.722	2.8285978	NA	1	0.501468862	sgMsh2 aCD4/8	autochthonous
chr17	46959479	46959479	T	C	ENSMUST00000113337.9	1	ENSMUSG00000023977	missense	T/A	953	Ubr2	ENSMUST00000113337.9:c.2857A>G	ENSMUSP00000108963.2:p.Thr953Ala	H-2-Kb	9	6	6	QTFTFAQKI	QTFTFTQKI	NetMHCpan	97.6	113.3	1.161	95	0.253	355.179	287.798	0.81	127.77	125.42	113.3	97.6	447.8267173	584.9382211	457.3513865	637.1621954	PW1766T2	0.542857143	0.542857143	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.238	95	76	20	0.263157895	17qC	chr17-3505882-94834206	3	2	1	0.722	2.8285978	NA	1	0.932418665	sgMsh2 aCD4/8	autochthonous
chr18	37952527	37952527	TG	T	ENSMUST00000043498.8	1	ENSMUSG00000024454	FS	P/X	75	Hdac3	ENSMUST00000043498.8:c.225del	ENSMUSP00000037981.7:p.Thr76ProfsTer43	H-2-Kb	9	39	0	SAPVTQAHL	NA	NetMHC	146.29	NA	NA	73	0.178	478.393	NA	NA	NA	146.29	NA	370.5	NA	586.2866429	NA	1009.834026	PW1766T2	0.114285714	0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.181	73	212	4	0.018867925	18qB3	chr18-3426642-89104078	3	2	1	0.722	2.8285978	NA	1	0.709108313	sgMsh2 aCD4/8	autochthonous
chr17	74494035	74494035	A	C	ENSMUST00000024873.6	1	ENSMUSG00000024072	missense	D/A	116	Yipf4	ENSMUST00000024873.6:c.347A>C	ENSMUSP00000024873.6:p.Asp116Ala	H-2-Kb	9	8	4	DNPAFWGPL	DNPDFWGPL	NetMHC	158.57	242.71	1.531	213	0.164	394.345	385.631	0.978	242.71	158.57	1144	404	344.4371603	384.6892055	426.8251484	475.6089297	PW1766T2	0.557142857	0.557142857	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.169	213	422	72	0.170616114	17qE2	chr17-3505882-94834206	3	2	1	0.722	2.8285978	NA	1	0.662095607	sgMsh2 aCD4/8	autochthonous
chr2	86733105	86733105	C	A	ENSMUST00000214317.1	NA	ENSMUSG00000111711	missense	C/F	169	Olfr1089	ENSMUST00000214317.1:c.506G>T	ENSMUSP00000149509.1:p.Cys169Phe	H-2-Kb	9	8	4	LSFFSYNII	LSFCSYNII	NetMHCpan	88.7	163.9	1.848	183	0.251	150.204	189.971	1.265	249.99	187.9	163.9	88.7	188.8469608	150.3522737	191.0952975	150.0548372	PW1766T2	1.285714286	1.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.255	183	0	0	NA	2qD	chr2-4896529-181649133	3	2	1	0.722	2.8285978	NA	1	0.999019999	sgMsh2 aCD4/8	autochthonous
chr17	19694032	19694032	G	A	ENSMUST00000171741.2	5	ENSMUSG00000095961	missense	A/T	620	Vmn2r102	ENSMUST00000171741.2:c.1858G>A	ENSMUSP00000126559.1:p.Ala620Thr	H-2-Kb	9	10	2	RTLSYILLL	RALSYILLL	NetMHCpan	113.1	108.3	0.958	493	0.03	336.393	251.553	0.748	212.63	272.74	108.3	113.1	290.4758291	400.0460623	389.2691619	502.6318444	PW1766T2	2.514285714	2.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.03	493	0	0	NA	17qA3.2	chr17-3505882-94834206	3	2	1	0.722	2.8285978	NA	1	0.117531765	sgMsh2 aCD4/8	autochthonous
chr2	88959221	88959221	C	T	ENSMUST00000215781.1	5	ENSMUSG00000048226	missense	P/S	252	Olfr1212	ENSMUST00000215781.1:c.754C>T	ENSMUSP00000149781.1:p.Pro252Ser	H-2-Kb	9	4	8	VVVSFFVSC	VVVSFFVPC	SMMPMBEC	278.131	162.648	0.585	272	0.265	324.792	181.513	0.559	187.19	343.31	301	457	175.8368925	306.2739079	162.6484766	278.131386	PW1766T2	2.128571429	3.085714286	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.261	272	0	0	NA	2qE1	chr2-4896529-181649133	3	2	1	0.722	2.8285978	NA	1	1	sgMsh2 aCD4/8	autochthonous
chr2	88959221	88959221	C	T	ENSMUST00000215781.1	5	ENSMUSG00000048226	missense	P/S	252	Olfr1212	ENSMUST00000215781.1:c.754C>T	ENSMUSP00000149781.1:p.Pro252Ser	H-2-Kb	9	6	6	VSFFVSCIF	VSFFVPCIF	NetMHCpan	269.4	343.6	1.275	272	0.265	322.467	545.636	1.692	1238.06	466.73	343.6	269.4	514.1738673	279.9690348	577.0985724	364.9639766	PW1766T2	2.685714286	2.685714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.261	272	0	0	NA	2qE1	chr2-4896529-181649133	3	2	1	0.722	2.8285978	NA	1	1	sgMsh2 aCD4/8	autochthonous
chr2	37005429	37005429	G	T	ENSMUST00000216437.1	5	ENSMUSG00000075379	missense	L/I	62	Olfr358	ENSMUST00000216437.1:c.184C>A	ENSMUSP00000150781.1:p.Leu62Ile	H-2-Kb	9	7	5	PMYFILSQL	PMYFLLSQL	SMM	103.065	60.969	0.592	305	0.023	327.368	183.625	0.561	298.82	542.47	478.1	752.9	60.9691303	103.0647134	68.43054518	112.2664526	PW1766T2	1.328571429	1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.029	305	0	0	NA	2qB	chr2-4896529-181649133	3	2	1	0.722	2.8285978	NA	1	0.113614039	sgMsh2 aCD4/8	autochthonous
chr2	86733105	86733105	C	A	ENSMUST00000214317.1	NA	ENSMUSG00000111711	missense	C/F	169	Olfr1089	ENSMUST00000214317.1:c.506G>T	ENSMUSP00000149509.1:p.Cys169Phe	H-2-Kb	9	11	1	FSYNIINHF	CSYNIINHF	NetMHCpan	338.7	327	0.965	183	0.251	355.543	431.651	1.214	760.13	577.44	327	338.7	360.6699835	344.4371603	502.6318444	366.6485738	PW1766T2	0.042857143	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.255	183	0	0	NA	2qD	chr2-4896529-181649133	3	2	1	0.722	2.8285978	NA	1	0.999019999	sgMsh2 aCD4/8	autochthonous
chr16	56035158	56035158	G	A	ENSMUST00000059052.8	1	ENSMUSG00000044763	missense	S/F	38	Trmt10c	ENSMUST00000059052.8:c.113C>T	ENSMUSP00000058954.8:p.Ser38Phe	H-2-Kb	9	3	9	GVLQRYMSF	GVLQRYMSS	SMMPMBEC	274.948	877.506	3.192	212	0.203	469.565	5102.403	10.866	9468.01	633.56	9327.3	736.6	682.5115418	305.5694975	877.5058087	274.9476424	PW1766T2	-0.228571429	0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.212	212	121	46	0.380165289	16qC1.1	chr16-3948854-96819699	3	2	1	0.722	2.8285978	NA	1	0.830557803	sgMsh2 aCD4/8	autochthonous
chr17	74493966	74493966	A	C	ENSMUST00000024873.6	1	ENSMUSG00000024072	missense	K/T	93	Yipf4	ENSMUST00000024873.6:c.278A>C	ENSMUSP00000024873.6:p.Lys93Thr	H-2-Kb	9	8	4	IYYTIRCVL	IYYKIRCVL	NetMHCpan	265.4	297.3	1.12	192	0.203	443.254	434.588	0.98	831.81	791.26	297.3	265.4	462.4981501	485.4114317	406.6773641	401.0975415	PW1766T2	1.214285714	1.214285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.187	192	403	57	0.141439206	17qE2	chr17-3505882-94834206	3	2	1	0.722	2.8285978	NA	1	0.732614666	sgMsh2 aCD4/8	autochthonous
chr2	87532804	87532804	C	A	ENSMUST00000217113.1	NA	ENSMUSG00000061520	missense	T/K	257	Olfr153	ENSMUST00000217113.1:c.770C>A	ENSMUSP00000149859.1:p.Thr257Lys	H-2-Kb	9	8	4	LLFKYFRPS	LLFTYFRPS	NetMHCpan	353.5	346.6	0.98	391	0.02	433.577	439.909	1.015	1257.39	1210.06	346.6	353.5	407.4834739	388.2486909	472.3348608	478.9056933	PW1766T2	-0.928571429	0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.02	391	0	0	NA	2qD	chr2-4896529-181649133	3	2	1	0.722	2.8285978	NA	1	0.07835451	sgMsh2 aCD4/8	autochthonous
chr2	157256458	157256458	A	G	ENSMUST00000143663.1	1	ENSMUSG00000074627	missense	Y/H	257	Mroh8	ENSMUST00000143663.1:c.769T>C	ENSMUSP00000124362.1:p.Tyr257His	H-2-Db	9	5	7	LSFQNVHLL	LSFQNVYLL	NetMHCpan	34	34.6	1.018	228	0.031	130.657	106.245	0.813	68.09	97.04	34.6	34	174.028349	175.2346559	144.4009332	164.2744417	PW1766T2	0.628571429	0.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.036	228	0	0	NA	2qH1	chr2-4896529-181649133	3	2	1	0.722	2.8285978	NA	1	0.141038117	sgMsh2 aCD4/8	autochthonous
chr6	83026292	83026292	C	T	ENSMUST00000113980.3	1	ENSMUSG00000030041	missense	S/F	390	M1ap	ENSMUST00000113980.3:c.1169C>T	ENSMUSP00000109613.3:p.Ser390Phe	H-2-Kb	8	7	5	VITPFHSL	VITPSHSL	NetMHCpan	37.7	2091	55.464	85	0.059	46.476	1872.889	40.298	4271.26	42.05	2091	37.7	967.6983488	50.90260401	1654.778997	76.33786332	PW1766T2	0.685714286	0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.072	85	24	0	0	6qC3	chr6-3494310-149550203	4	3	1	0.722	2.8285978	NA	1	0.282076235	sgMsh2 aCD4/8	autochthonous
chr6	69631826	69631826	C	A	ENSMUST00000177697.1	NA	ENSMUSG00000094319	missense	Q/H	36	Igkv4-54	ENSMUST00000177697.1:c.108G>T	ENSMUSP00000136516.1:p.Gln36His	H-2-Kb	8	4	8	VSYMYRYH	VSYMYRYQ	SMMPMBEC	33.093	13.764	0.416	561	0.012	82.279	23.675	0.288	15.01	68.01	141.2	139.3	32.33999884	96.54727043	13.76385219	33.09329418	PW1766T2	-1.5	-0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.014	561	0	0	NA	6qC1	chr6-3494310-149550203	4	3	1	0.722	2.8285978	NA	1	0.054848157	sgMsh2 aCD4/8	autochthonous
chr6	28830273	28830273	G	A	ENSMUST00000062304.6	NA	ENSMUSG00000049939	missense	P/S	448	Lrrc4	ENSMUST00000062304.6:c.1342C>T	ENSMUSP00000062158.5:p.Pro448Ser	H-2-Kb	8	11	1	SNFSFFTT	PNFSFFTT	NetMHCpan	53.1	3045.8	57.36	337	0.039	84.433	2581.447	30.574	4970.15	71.2	3045.8	53.1	2117.093311	120.9873599	1685.543635	97.66523514	PW1766T2	0.385714286	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.044	337	8	0	0	6qA3.3	chr6-3494310-149550203	4	3	1	0.722	2.8285978	NA	1	0.172379921	sgMsh2 aCD4/8	autochthonous
chr4	64006428	64006428	T	G	ENSMUST00000107377.9	1	ENSMUSG00000028364	missense	K/T	1011	Tnc	ENSMUST00000107377.9:c.3032A>C	ENSMUSP00000103000.3:p.Lys1011Thr	H-2-Kb	8	10	2	ATFDRYRL	AKFDRYRL	NetMHCpan	23.8	1564.8	65.748	100	0.28	127.221	1180.942	9.283	1320.19	73	1564.8	23.8	1025.038081	186.956255	1041.69361	181.4429089	PW1766T2	-1.128571429	-1.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.295	100	43	14	0.325581395	4qC1	chr4-3834436-156200568	2	1	1	0.722	2.8285978	NA	1	1	sgMsh2 aCD4/8	autochthonous
chr3	37091959	37091959	A	G	ENSMUST00000144629.7	1	ENSMUSG00000027719	missense	N/S	492	Adad1	ENSMUST00000144629.7:c.1475A>G	ENSMUSP00000115260.1:p.Asn492Ser	H-2-Kb	8	10	2	VSRPHISL	VNRPHISL	SMM	72.734	134.505	1.849	333	0.021	97.334	222.015	2.281	222.73	78.86	221.3	166.8	134.5054866	72.73442335	241.4015198	115.8083836	PW1766T2	-0.371428571	-0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.027	333	0	0	NA	3qB	chr3-3792373-159911278	3	2	1	0.722	2.8285978	NA	1	0.105778588	sgMsh2 aCD4/8	autochthonous
chr4	45279417	45279417	C	T	ENSMUST00000107804.1	5	ENSMUSG00000035615	missense	S/F	714	Frmpd1	ENSMUST00000107804.1:c.2141C>T	ENSMUSP00000103434.1:p.Ser714Phe	H-2-Kb	8	9	3	SIFPGSHL	SISPGSHL	NetMHCpan	77.6	4518.3	58.226	34	0.235	126.159	4216.687	33.424	8139.81	107.86	4518.3	77.6	3790.879676	144.4574685	3915.074224	145.794117	PW1766T2	0.728571429	0.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.242	34	2	1	0.5	4qB1	chr4-3834436-156200568	2	1	1	0.722	2.8285978	NA	1	0.948089567	sgMsh2 aCD4/8	autochthonous
chr3	37048091	37048091	G	A	ENSMUST00000057272.14	5	ENSMUSG00000037270	missense	A/T	4811	4932438A13Rik	ENSMUST00000057272.14:c.14431G>A	ENSMUSP00000060199.8:p.Ala4811Thr	H-2-Kb	8	8	4	TIFTLPRM	TIFALPRM	NetMHCpan	63.9	74.2	1.161	242	0.021	129.529	140.323	1.083	125.5	108.14	74.2	63.9	155.1457917	151.9637493	165.4778997	150.9176382	PW1766T2	0.885714286	0.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.027	242	42	2	0.047619048	3qB	chr3-3792373-159911278	3	2	1	0.722	2.8285978	NA	1	0.105778588	sgMsh2 aCD4/8	autochthonous
chr2	157256458	157256458	A	G	ENSMUST00000143663.1	1	ENSMUSG00000074627	missense	Y/H	257	Mroh8	ENSMUST00000143663.1:c.769T>C	ENSMUSP00000124362.1:p.Tyr257His	H-2-Kb	8	5	7	LSFQNVHL	LSFQNVYL	SMMPMBEC	68.824	70.752	1.028	228	0.031	91.258	95.15	1.043	159.35	121.65	96.6	84.4	93.70008827	98.11603738	70.75220838	68.82401428	PW1766T2	-0.028571429	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.036	228	0	0	NA	2qH1	chr2-4896529-181649133	3	2	1	0.722	2.8285978	NA	1	0.141038117	sgMsh2 aCD4/8	autochthonous
chr4	126151828	126151828	GT	G	ENSMUST00000097891.3	1	ENSMUSG00000073758	FS	T/X	353	Sh3d21	ENSMUST00000097891.3:c.1057del	ENSMUSP00000095501.3:p.Thr353ProfsTer73	H-2-Kb	8	56	0	RIPLWTRL	NA	NetMHC	149.4	NA	NA	82	0.244	225.27	NA	NA	NA	149.4	NA	232.9	NA	234.2825811	NA	217.6406428	PW1766T2	0.628571429	0.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.265	82	27	2	0.074074074	4qD2.2	chr4-3834436-156200568	2	1	1	0.722	2.8285978	NA	1	1	sgMsh2 aCD4/8	autochthonous
chr3	5243250	5243250	G	A	ENSMUST00000026284.12	5	ENSMUSG00000025255	missense	S/N	512	Zfhx4	ENSMUST00000026284.12:c.1535G>A	ENSMUSP00000026284.6:p.Ser512Asn	H-2-Kb	8	5	7	ISPLSSNV	ISPLSSSV	NetMHC	152.39	591.01	3.878	190	0.032	262.341	638.834	2.435	591.01	152.39	829.1	525.2	550.4780419	224.2538976	686.6572344	300.4277187	PW1766T2	0.071428571	0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.033	190	1	0	0	3qA1	chr3-3792373-159911278	3	2	1	0.722	2.8285978	NA	1	0.129284941	sgMsh2 aCD4/8	autochthonous
chr6	58008788	58008788	T	G	ENSMUST00000228951.1	NA	ENSMUSG00000048697	missense	S/R	139	Vmn1r26	ENSMUST00000228951.1:c.415A>C	ENSMUSP00000154463.1:p.Ser139Arg	H-2-Kb	8	7	5	LSFSRNQL	LSFSSNQL	NetMHCpan	87.5	155.2	1.774	346	0.202	188.162	150.665	0.801	183.68	197.37	155.2	87.5	146.1302072	238.0893668	139.2323008	178.9534189	PW1766T2	-0.928571429	-0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.203	346	0	0	NA	6qB3	chr6-3494310-149550203	4	3	1	0.722	2.8285978	NA	1	0.795298273	sgMsh2 aCD4/8	autochthonous
chr3	87913145	87913145	CT	C	ENSMUST00000005017.14	1	ENSMUSG00000004897	FS	F/X	48	Hdgf	ENSMUST00000005017.14:c.150del	ENSMUSP00000005017.8:p.Phe50LeufsTer91	H-2-Kb	8	9	5	QVFFLGPM	QVFFFGTH	NetMHCpan	133.5	6279.1	47.034	182	0.275	329.335	4621.078	14.032	8076.13	242.05	6279.1	133.5	2963.056959	416.6198901	1332.723329	491.7450535	PW1766T2	1.928571429	1.928571429	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.268	182	627	34	0.054226475	3qF1	chr3-3792373-159911278	3	2	1	0.722	2.8285978	NA	1	1	sgMsh2 aCD4/8	autochthonous
chr6	83026292	83026292	C	T	ENSMUST00000113980.3	1	ENSMUSG00000030041	missense	S/F	390	M1ap	ENSMUST00000113980.3:c.1169C>T	ENSMUSP00000109613.3:p.Ser390Phe	H-2-Kb	8	4	8	SFYVITPF	SFYVITPS	NetMHC	272.98	4643.26	17.01	85	0.059	477.318	1849.983	3.876	4643.26	272.98	2727.8	277.4	766.9022289	941.3258822	972.1650414	677.2359439	PW1766T2	1.528571429	1.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.072	85	24	0	0	6qC3	chr6-3494310-149550203	4	3	1	0.722	2.8285978	NA	1	0.282076235	sgMsh2 aCD4/8	autochthonous
chr3	14548130	14548130	A	AAG	ENSMUST00000169079.7	1	ENSMUSG00000027550	FS	Q/QX	426	Lrrcc1	ENSMUST00000169079.7:c.1287_1288dup	ENSMUSP00000126560.1:p.Met430ArgfsTer41	H-2-Kb	8	32	0	MSYISKQM	NA	NetMHCpan	195	NA	NA	252	0.246	279.716	NA	NA	NA	278.41	NA	195	NA	281.0217928	NA	292.2402293	PW1766T2	-0.557142857	-0.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.233	252	20	0	0	3qA1	chr3-3792373-159911278	3	2	1	0.722	2.8285978	NA	1	0.912830038	sgMsh2 aCD4/8	autochthonous
chr4	126151828	126151828	GT	G	ENSMUST00000097891.3	1	ENSMUSG00000073758	FS	T/X	353	Sh3d21	ENSMUST00000097891.3:c.1057del	ENSMUSP00000095501.3:p.Thr353ProfsTer73	H-2-Kb	8	74	0	SQLRMKPL	NA	SMMPMBEC	292.914	NA	NA	82	0.244	316.697	NA	NA	NA	324.55	NA	468.5	NA	308.8445912	NA	292.9139126	PW1766T2	-0.571428571	-0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.265	82	27	2	0.074074074	4qD2.2	chr4-3834436-156200568	2	1	1	0.722	2.8285978	NA	1	1	sgMsh2 aCD4/8	autochthonous
chr3	87913145	87913145	CT	C	ENSMUST00000005017.14	1	ENSMUSG00000004897	FS	F/X	48	Hdgf	ENSMUST00000005017.14:c.150del	ENSMUSP00000005017.8:p.Phe50LeufsTer91	H-2-Kb	8	54	0	TTLQSRPL	NA	SMM	174.478	NA	NA	182	0.275	286.989	NA	NA	NA	375.03	NA	851.1	NA	174.4777291	NA	198.9481935	PW1766T2	-0.5	-0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.268	182	627	34	0.054226475	3qF1	chr3-3792373-159911278	3	2	1	0.722	2.8285978	NA	1	1	sgMsh2 aCD4/8	autochthonous
chr5	135371382	135371382	G	T	ENSMUST00000000940.14	1	ENSMUSG00000000916	missense	D/Y	120	Nsun5	ENSMUST00000000940.14:c.358G>T	ENSMUSP00000000940.8:p.Asp120Tyr	H-2-Kb	8	6	6	VSRNEYLL	VSRNEDLL	SMM	299.047	934.846	3.126	108	0.065	366.017	2895.976	7.912	4792.55	520.95	6667.9	423.9	934.8458404	299.0473787	999.401507	308.1342684	PW1766T2	-0.857142857	-0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.078	108	29	3	0.103448276	5qG2	chr5-3582301-150662084	3	2	1	0.722	2.8285978	NA	1	0.305582588	sgMsh2 aCD4/8	autochthonous
chr6	28830273	28830273	G	A	ENSMUST00000062304.6	NA	ENSMUSG00000049939	missense	P/S	448	Lrrc4	ENSMUST00000062304.6:c.1342C>T	ENSMUSP00000062158.5:p.Pro448Ser	H-2-Kb	9	11	1	SNFSFFTTV	PNFSFFTTV	NetMHCpan	3.8	65.8	17.316	337	0.039	14.303	73.495	5.139	81.19	4.94	65.8	3.8	57.29411296	23.66519024	94.67820161	37.08941642	PW1766T2	1.485714286	1.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.044	337	8	0	0	6qA3.3	chr6-3494310-149550203	4	3	1	0.722	2.8285978	NA	1	0.172379921	sgMsh2 aCD4/8	autochthonous
chr5	35833113	35833113	C	T	ENSMUST00000129347.7	5	ENSMUSG00000029095	missense	P/S	314	Ablim2	ENSMUST00000129347.7:c.940C>T	ENSMUSP00000123525.1:p.Pro314Ser	H-2-Kb	9	11	1	SSRVIYAKL	PSRVIYAKL	NetMHC	16.15	1323.28	81.937	67	0.224	102.163	774.399	7.58	1323.28	16.15	1147.7	47.2	400.9682638	165.6189397	401.0975415	157.1267038	PW1766T2	0.657142857	0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.228	67	0	0	NA	5qB3	chr5-3582301-150662084	3	2	1	0.722	2.8285978	NA	1	0.89324141	sgMsh2 aCD4/8	autochthonous
chr6	69631826	69631826	C	A	ENSMUST00000177697.1	NA	ENSMUSG00000094319	missense	Q/H	36	Igkv4-54	ENSMUST00000177697.1:c.108G>T	ENSMUSP00000136516.1:p.Gln36His	H-2-Kb	9	4	8	VSYMYRYHQ	VSYMYRYQQ	NetMHC	57.17	109.01	1.907	561	0.012	75.541	100.222	1.327	109.01	57.17	652.8	395.2	91.43448014	75.70246132	71.16230389	75.37893549	PW1766T2	-1.885714286	-0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.014	561	0	0	NA	6qC1	chr6-3494310-149550203	4	3	1	0.722	2.8285978	NA	1	0.054848157	sgMsh2 aCD4/8	autochthonous
chr4	126151828	126151828	GT	G	ENSMUST00000097891.3	1	ENSMUSG00000073758	FS	T/X	353	Sh3d21	ENSMUST00000097891.3:c.1057del	ENSMUSP00000095501.3:p.Thr353ProfsTer73	H-2-Kb	9	73	0	ISQLRMKPL	NA	NetMHC	79.18	NA	NA	82	0.244	174.058	NA	NA	NA	79.18	NA	161.8	NA	224.4450336	NA	186.3159349	PW1766T2	-0.571428571	-0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.265	82	27	2	0.074074074	4qD2.2	chr4-3834436-156200568	2	1	1	0.722	2.8285978	NA	1	1	sgMsh2 aCD4/8	autochthonous
chr3	114097865	114097865	AG	A	ENSMUST00000092155.11	1	ENSMUSG00000027966	FS	K/X	426	Col11a1	ENSMUST00000092155.11:c.1282del	ENSMUSP00000089793.5:p.Glu428AsnfsTer64	H-2-Kb	9	43	0	VLLGFPATL	NA	NetMHCpan	82.7	NA	NA	144	0.049	266.799	NA	NA	NA	155.93	NA	82.7	NA	377.6678362	NA	395.5942769	PW1766T2	1.357142857	2.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.053	144	0	0	NA	3qF3	chr3-3792373-159911278	3	2	1	0.722	2.8285978	NA	1	0.207639451	sgMsh2 aCD4/8	autochthonous
chr3	108397303	108397303	C	T	ENSMUST00000090558.9	1	ENSMUSG00000068740	missense	A/T	2247	Celsr2	ENSMUST00000090558.9:c.6739G>A	ENSMUSP00000088046.3:p.Ala2247Thr	H-2-Kb	9	11	1	TSVIIYHTL	ASVIIYHTL	NetMHCpan	83.2	107	1.286	93	0.065	248.702	309.463	1.244	205.64	169.12	107	83.2	493.298733	418.8996524	413.2853397	328.2842143	PW1766T2	1.685714286	1.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.074	93	2	0	0	3qF3	chr3-3792373-159911278	3	2	1	0.722	2.8285978	NA	1	0.289911686	sgMsh2 aCD4/8	autochthonous
chr6	83026292	83026292	C	T	ENSMUST00000113980.3	1	ENSMUSG00000030041	missense	S/F	390	M1ap	ENSMUST00000113980.3:c.1169C>T	ENSMUSP00000109613.3:p.Ser390Phe	H-2-Kb	9	8	4	ITPFHSLTL	ITPSHSLTL	NetMHCpan	77.8	128.2	1.648	85	0.059	264.22	233.208	0.883	174.6	208.47	128.2	77.8	291.8166046	319.9705442	442.8432201	364.9639766	PW1766T2	0.585714286	0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.072	85	24	0	0	6qC3	chr6-3494310-149550203	4	3	1	0.722	2.8285978	NA	1	0.282076235	sgMsh2 aCD4/8	autochthonous
chr5	31251073	31251073	T	C	ENSMUST00000202576.3	1	ENSMUSG00000029148	missense	F/L	526	Nrbp1	ENSMUST00000202576.3:c.1576T>C	ENSMUSP00000143872.1:p.Phe526Leu	H-2-Kb	9	11	1	LNFTRNSTL	FNFTRNSTL	NetMHCpan	69.4	94.3	1.359	117	0.103	128.667	138.984	1.08	229.22	221.19	94.3	69.4	149.6614677	145.5827772	128.3068964	111.7506351	PW1766T2	-0.514285714	-0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.105	117	292	33	0.113013699	5qB1	chr5-3582301-150662084	3	2	1	0.722	2.8285978	NA	1	0.411361176	sgMsh2 aCD4/8	autochthonous
chr2	157256458	157256458	A	G	ENSMUST00000143663.1	1	ENSMUSG00000074627	missense	Y/H	257	Mroh8	ENSMUST00000143663.1:c.769T>C	ENSMUSP00000124362.1:p.Tyr257His	H-2-Kb	9	5	7	LSFQNVHLL	LSFQNVYLL	NetMHCpan	173	145	0.838	228	0.031	338.59	243.927	0.72	139.11	260.07	145	173	342.8546153	456.1524376	348.5378918	417.1094219	PW1766T2	0.628571429	0.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.036	228	0	0	NA	2qH1	chr2-4896529-181649133	3	2	1	0.722	2.8285978	NA	1	0.141038117	sgMsh2 aCD4/8	autochthonous
chr3	14548130	14548130	A	AAG	ENSMUST00000169079.7	1	ENSMUSG00000027550	FS	Q/QX	426	Lrrcc1	ENSMUST00000169079.7:c.1287_1288dup	ENSMUSP00000126560.1:p.Met430ArgfsTer41	H-2-Kb	9	42	0	KMFTARLSL	NA	NetMHCpan	141.3	NA	NA	252	0.246	345.926	NA	NA	NA	294.56	NA	141.3	NA	397.2921646	NA	499.1717511	PW1766T2	0.885714286	0.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.233	252	20	0	0	3qA1	chr3-3792373-159911278	3	2	1	0.722	2.8285978	NA	1	0.912830038	sgMsh2 aCD4/8	autochthonous
chr6	83026292	83026292	C	T	ENSMUST00000113980.3	1	ENSMUSG00000030041	missense	S/F	390	M1ap	ENSMUST00000113980.3:c.1169C>T	ENSMUSP00000109613.3:p.Ser390Phe	H-2-Kb	9	6	6	YVITPFHSL	YVITPSHSL	NetMHCpan	156.7	1624.4	10.366	85	0.059	484.727	1914.992	3.951	1924.04	300.94	1624.4	156.7	1905.943402	668.5132201	2905.694826	820.8239126	PW1766T2	0.685714286	0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.072	85	24	0	0	6qC3	chr6-3494310-149550203	4	3	1	0.722	2.8285978	NA	1	0.282076235	sgMsh2 aCD4/8	autochthonous
chr3	37091959	37091959	A	G	ENSMUST00000144629.7	1	ENSMUSG00000027719	missense	N/S	492	Adad1	ENSMUST00000144629.7:c.1475A>G	ENSMUSP00000115260.1:p.Asn492Ser	H-2-Kb	9	10	2	VSRPHISLV	VNRPHISLV	SMM	236.652	251.831	1.064	333	0.021	293.506	360.765	1.229	480.84	316.57	394	292.4	251.8314697	236.6519024	327.5291816	294.6117067	PW1766T2	0.342857143	0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.027	333	0	0	NA	3qB	chr3-3792373-159911278	3	2	1	0.722	2.8285978	NA	1	0.105778588	sgMsh2 aCD4/8	autochthonous
chr6	83026292	83026292	C	T	ENSMUST00000113980.3	1	ENSMUSG00000030041	missense	S/F	390	M1ap	ENSMUST00000113980.3:c.1169C>T	ENSMUSP00000109613.3:p.Ser390Phe	H-2-Kb	9	3	9	CSFYVITPF	CSFYVITPS	NetMHCpan	234.2	2237.5	9.554	85	0.059	390.068	1956.704	5.016	5932.72	373.59	2237.5	234.2	908.050496	406.5462879	1675.907328	525.1096507	PW1766T2	1.528571429	1.6	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.072	85	24	0	0	6qC3	chr6-3494310-149550203	4	3	1	0.722	2.8285978	NA	1	0.282076235	sgMsh2 aCD4/8	autochthonous
chr3	87913145	87913145	CT	C	ENSMUST00000005017.14	1	ENSMUSG00000004897	FS	F/X	48	Hdgf	ENSMUST00000005017.14:c.150del	ENSMUSP00000005017.8:p.Phe50LeufsTer91	H-2-Kb	9	8	6	YQVFFLGPM	YQVFFFGTH	NetMHCpan	208	10598.6	50.955	182	0.275	455.442	6575.522	14.438	9408.99	400.25	10598.6	208	3742.053566	510.6343193	3063.726549	525.1096507	PW1766T2	1.928571429	1.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.268	182	627	34	0.054226475	3qF1	chr3-3792373-159911278	3	2	1	0.722	2.8285978	NA	1	1	sgMsh2 aCD4/8	autochthonous
chr6	58008788	58008788	T	G	ENSMUST00000228951.1	NA	ENSMUSG00000048697	missense	S/R	139	Vmn1r26	ENSMUST00000228951.1:c.415A>C	ENSMUSP00000154463.1:p.Ser139Arg	H-2-Kb	9	7	5	LSFSRNQLF	LSFSSNQLF	SMM	154.209	531.019	3.443	346	0.202	212.432	891.803	4.198	1200.88	419.9	1130.1	256.5	531.018926	154.2090991	653.5066331	168.3642965	PW1766T2	-0.414285714	-0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.203	346	0	0	NA	6qB3	chr6-3494310-149550203	4	3	1	0.722	2.8285978	NA	1	0.795298273	sgMsh2 aCD4/8	autochthonous
chr6	22233961	22233961	A	T	ENSMUST00000115383.8	1	ENSMUSG00000062980	missense	Q/L	858	Cped1	ENSMUST00000115383.8:c.2573A>T	ENSMUSP00000111041.2:p.Gln858Leu	H-2-Kb	9	10	2	VLWLNSNHL	VQWLNSNHL	NetMHCpan	274.9	307.3	1.118	387	0.202	468.6	329.642	0.703	326.54	459.55	307.3	274.9	332.7438214	477.6502397	469.0833305	591.9022625	PW1766T2	-0.614285714	0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.2	387	9	1	0.111111111	6qA3.1	chr6-3494310-149550203	4	3	1	0.722	2.8285978	NA	1	0.783545097	sgMsh2 aCD4/8	autochthonous
chr6	57662104	57662104	A	C	ENSMUST00000031817.9	1	ENSMUSG00000029798	missense	N/T	850	Herc6	ENSMUST00000031817.9:c.2549A>C	ENSMUSP00000031817.8:p.Asn850Thr	H-2-Kb	9	6	6	VDYIFTISI	VDYIFNISI	SMMPMBEC	182.495	228.166	1.25	140	0.179	220.409	359.632	1.632	784.06	499.14	426.1	241.7	293.1635689	199.1177609	228.165512	182.4945923	PW1766T2	1.928571429	1.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.189	140	0	0	NA	6qB3	chr6-3494310-149550203	4	3	1	0.722	2.8285978	NA	1	0.740450117	sgMsh2 aCD4/8	autochthonous
chr8	106874515	106874515	A	T	ENSMUST00000034385.11	1	ENSMUSG00000031910	missense	K/M	203	Has3	ENSMUST00000034385.11:c.608A>T	ENSMUSP00000034385.5:p.Lys203Met	H-2-Db	10	11	1	MALGNSVDYI	KALGNSVDYI	NetMHCpan	19	29.6	1.558	147	0.211	126.347	115.178	0.912	20.47	25.88	29.6	19	209.0499173	326.0243217	200.7566777	226.8140743	PW1766T2	-0.114285714	1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.219	147	7	1	0.142857143	8qD3	chr8-3439317-128493272	3	2	1	0.722	2.8285978	NA	1	0.857981881	sgMsh2 aCD4/8	autochthonous
chr7	111073802	111073802	CA	C	ENSMUST00000163014.1	2	ENSMUSG00000005610	FS	F/X	121	Eif4g2	ENSMUST00000163014.1:c.361del	ENSMUSP00000123811.1:p.Phe121LeufsTer16	H-2-Kb	8	16	0	AWFLFFLL	NA	SMMPMBEC	21.269	NA	NA	192	0.078	27.542	NA	NA	NA	31.22	NA	164.9	NA	23.86382195	NA	21.2686537	PW1766T2	2.7	2.7	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0781	192	8	1	0.125	7qE3	chr7-3489103-145323643	2	1	1	0.722	2.8285978	NA	1	0.30597436	sgMsh2 aCD4/8	autochthonous
chr7	108103974	108103974	T	C	ENSMUST00000215159.2	3	ENSMUSG00000078118	missense	Y/H	222	Olfr483	ENSMUST00000215159.2:c.664T>C	ENSMUSP00000150898.2:p.Tyr222His	H-2-Kb	8	9	3	ISHSYILI	ISYSYILI	NetMHCpan	34	4.8	0.141	499	0.038	72.194	7.363	0.102	3.85	43.29	4.8	34	10.68415057	125.8171954	9.925216755	101.0974031	PW1766T2	0.957142857	0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.039	499	0	0	NA	7qE3	chr7-3489103-145323643	2	1	1	0.722	2.8285978	NA	1	0.152791294	sgMsh2 aCD4/8	autochthonous
chr7	111073802	111073802	CA	C	ENSMUST00000163014.1	2	ENSMUSG00000005610	FS	F/X	121	Eif4g2	ENSMUST00000163014.1:c.361del	ENSMUSP00000123811.1:p.Phe121LeufsTer16	H-2-Kb	8	4	8	SALLRFFL	SALLRFFF	NetMHC	57.38	570.82	9.948	192	0.078	273.739	3298.228	12.049	570.82	57.38	643.4	108.2	7140.687051	439.2785529	5953.056439	473.9581548	PW1766T2	2.042857143	2.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0781	192	8	1	0.125	7qE3	chr7-3489103-145323643	2	1	1	0.722	2.8285978	NA	1	0.30597436	sgMsh2 aCD4/8	autochthonous
chr8	104952547	104952547	C	T	ENSMUST00000076384.5	1	ENSMUSG00000062826	missense	A/V	332	Ces2f	ENSMUST00000076384.5:c.995C>T	ENSMUSP00000075722.5:p.Ala332Val	H-2-Kb	8	9	3	ASVDFHPV	ASADFHPV	NetMHC	84.61	399.68	4.724	259	0.046	116.187	271.291	2.335	399.68	84.61	271.1	92.5	207.8452003	139.8749679	271.4813499	139.8749679	PW1766T2	0.3	0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.051	259	0	0	NA	8qD3	chr8-3439317-128493272	3	2	1	0.722	2.8285978	NA	1	0.199804	sgMsh2 aCD4/8	autochthonous
chr7	86811847	86811847	C	T	ENSMUST00000164996.1	5	ENSMUSG00000090949	missense	P/S	794	Vmn2r77	ENSMUST00000164996.1:c.2380C>T	ENSMUSP00000129540.1:p.Pro794Ser	H-2-Kb	8	5	7	VWITFLSV	VWITFLPV	NetMHC	103.14	53.66	0.52	359	0.156	156.581	75.471	0.482	53.66	103.14	121	157.3	76.51384027	158.0301673	74.42862571	155.8619122	PW1766T2	1.842857143	1.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.16	359	0	0	NA	7qD3	chr7-3489103-145323643	2	1	1	0.722	2.8285978	NA	1	0.626836078	sgMsh2 aCD4/8	autochthonous
chr7	108103974	108103974	T	C	ENSMUST00000215159.2	3	ENSMUSG00000078118	missense	Y/H	222	Olfr483	ENSMUST00000215159.2:c.664T>C	ENSMUSP00000150898.2:p.Tyr222His	H-2-Kb	8	7	5	IVISHSYI	IVISYSYI	NetMHCpan	100.1	13.8	0.138	499	0.038	190.332	35.457	0.186	13.44	133.64	13.8	100.1	72.2337231	279.7306149	57.11366107	247.0244836	PW1766T2	1.014285714	1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.039	499	0	0	NA	7qE3	chr7-3489103-145323643	2	1	1	0.722	2.8285978	NA	1	0.152791294	sgMsh2 aCD4/8	autochthonous
chr8	106874515	106874515	A	T	ENSMUST00000034385.11	1	ENSMUSG00000031910	missense	K/M	203	Has3	ENSMUST00000034385.11:c.608A>T	ENSMUSP00000034385.5:p.Lys203Met	H-2-Kb	8	6	6	MYTAFMAL	MYTAFKAL	NetMHCpan	109.4	297.2	2.717	147	0.211	176.61	505.463	2.862	706.59	170.52	297.2	109.4	464.2372661	182.7006111	546.6885777	263.475356	PW1766T2	1.442857143	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.219	147	7	1	0.142857143	8qD3	chr8-3439317-128493272	3	2	1	0.722	2.8285978	NA	1	0.857981881	sgMsh2 aCD4/8	autochthonous
chr7	111073802	111073802	CA	C	ENSMUST00000163014.1	2	ENSMUSG00000005610	FS	F/X	121	Eif4g2	ENSMUST00000163014.1:c.361del	ENSMUSP00000123811.1:p.Phe121LeufsTer16	H-2-Kb	8	8	4	RFFLTVNL	RFFFDCQL	SMM	102.977	426.324	4.14	192	0.078	145.217	455.73	3.138	1366.47	249.9	474.2	183.1	426.324214	102.9769442	437.2602513	107.3346637	PW1766T2	1.885714286	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0781	192	8	1	0.125	7qE3	chr7-3489103-145323643	2	1	1	0.722	2.8285978	NA	1	0.30597436	sgMsh2 aCD4/8	autochthonous
chrX	20645593	20645593	T	G	ENSMUST00000115374.7	1	ENSMUSG00000031060	missense	I/S	353	Rbm10	ENSMUST00000115374.7:c.1058T>G	ENSMUSP00000111032.1:p.Ile353Ser	H-2-Kb	8	10	2	TSVEAAQL	TIVEAAQL	SMMPMBEC	219.149	381.716	1.742	130	0.054	254.486	476.314	1.872	562.92	274.15	913	682	389.7086091	234.8226582	381.7156799	219.1492557	PW1766T2	0.542857143	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.052	130	8	0	0	XqA1.3	NA	NA	NA	NA	0.722	2.8285978	NA	NA	NA	sgMsh2 aCD4/8	autochthonous
chr9	109058021	109058021	T	C	ENSMUST00000061973.4	1	ENSMUSG00000049734	missense	I/V	301	Trex1	ENSMUST00000061973.4:c.901A>G	ENSMUSP00000050971.4:p.Ile301Val	H-2-Kb	8	7	5	LTLAVATL	LTLAIATL	SMM	232.67	533.016	2.291	72	0.319	294.319	465.901	1.583	634.06	384.5	247.2	350	533.0156983	232.6697911	398.7860888	238.6382195	PW1766T2	2	2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.319	72	17	10	0.588235294	9qF2	chr9-3342997-124127224	2	1	1	0.722	2.8285978	NA	1	1	sgMsh2 aCD4/8	autochthonous
chr9	7176795	7176795	G	A	ENSMUST00000140466.7	5	ENSMUSG00000047193	missense	R/W	55	Dync2h1	ENSMUST00000140466.7:c.163C>T	ENSMUSP00000120007.1:p.Arg55Trp	H-2-Kb	8	9	3	VQWSEAGL	VQRSEAGL	SMMPMBEC	119.053	384.362	3.228	53	0.075	293.509	1265.101	4.31	2070.22	392.15	3104.7	572.1	459.9811133	194.8677632	384.3616066	119.0529058	PW1766T2	-0.5	-0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.08	53	3	0	0	9qA1	chr9-3342997-124127224	2	1	1	0.722	2.8285978	NA	1	0.313418039	sgMsh2 aCD4/8	autochthonous
chr9	44507622	44507622	C	T	ENSMUST00000218183.1	5	ENSMUSG00000063382	missense	S/F	956	Bcl9l	ENSMUST00000218183.1:c.2867C>T	ENSMUSP00000151837.1:p.Ser956Phe	H-2-Kb	8	9	3	TPFQMVPL	TPSQMVPL	SMMPMBEC	90.311	2425.158	26.853	110	0.1	360.911	5294.372	14.669	11129.86	627.69	8118.5	1099.3	2470.244836	94.13258822	2425.157786	90.31086459	PW1766T2	0.857142857	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.112	110	25	4	0.16	9qA5.2	chr9-3342997-124127224	2	1	1	0.722	2.8285978	NA	1	0.438785254	sgMsh2 aCD4/8	autochthonous
chr9	15863271	15863271	A	G	ENSMUST00000057920.6	1	ENSMUSG00000050901	missense	V/A	164	Mtnr1b	ENSMUST00000057920.6:c.491T>C	ENSMUSP00000053086.5:p.Val164Ala	H-2-Kb	8	6	6	IYISLAWL	IYISLVWL	SMMPMBEC	387.026	1116.195	2.884	91	0.143	425.795	1191.592	2.799	2192.31	712	1159.3	428.2	1223.883275	423.3894187	1116.194813	387.0258739	PW1766T2	1.557142857	1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.135	91	0	0	NA	9qA2	chr9-3342997-124127224	2	1	1	0.722	2.8285978	NA	1	0.52889294	sgMsh2 aCD4/8	autochthonous
chr8	106874515	106874515	A	T	ENSMUST00000034385.11	1	ENSMUSG00000031910	missense	K/M	203	Has3	ENSMUST00000034385.11:c.608A>T	ENSMUSP00000034385.5:p.Lys203Met	H-2-Kb	9	5	7	VMYTAFMAL	VMYTAFKAL	NetMHC	5.55	10.13	1.825	147	0.211	10.8	17.744	1.643	10.13	5.55	8.1	6	25.3577082	15.59947563	34.06042008	22.09276129	PW1766T2	1.442857143	1.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.219	147	7	1	0.142857143	8qD3	chr8-3439317-128493272	3	2	1	0.722	2.8285978	NA	1	0.857981881	sgMsh2 aCD4/8	autochthonous
chr6	98945363	98945363	G	A	ENSMUST00000113322.8	5	ENSMUSG00000030067	missense	A/V	499	Foxp1	ENSMUST00000113322.8:c.1496C>T	ENSMUSP00000108948.2:p.Ala499Val	H-2-Kb	9	11	1	VSLIRQAIL	ASLIRQAIL	NetMHC	45.38	194.75	4.292	434	0.113	71.266	238.094	3.341	194.75	45.38	315.7	63.6	258.291432	86.91805512	217.8963724	78.93143527	PW1766T2	1.485714286	1.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.111	434	136	13	0.095588235	6qD3	chr6-3494310-149550203	4	3	1	0.722	2.8285978	NA	1	0.434867529	sgMsh2 aCD4/8	autochthonous
chr9	15863271	15863271	A	G	ENSMUST00000057920.6	1	ENSMUSG00000050901	missense	V/A	164	Mtnr1b	ENSMUST00000057920.6:c.491T>C	ENSMUSP00000053086.5:p.Val164Ala	H-2-Kb	9	8	4	ISLAWLLTL	ISLVWLLTL	NetMHCpan	48.6	63.4	1.305	91	0.143	106.765	81.254	0.761	47.72	63.13	63.4	48.6	99.10829389	156.7147954	109.7109561	150.4007493	PW1766T2	2.2	2.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.135	91	0	0	NA	9qA2	chr9-3342997-124127224	2	1	1	0.722	2.8285978	NA	1	0.52889294	sgMsh2 aCD4/8	autochthonous
chr7	111073802	111073802	CA	C	ENSMUST00000163014.1	2	ENSMUSG00000005610	FS	F/X	121	Eif4g2	ENSMUST00000163014.1:c.361del	ENSMUSP00000123811.1:p.Phe121LeufsTer16	H-2-Kb	9	16	0	AWFLFFLLV	NA	SMM	19.729	NA	NA	192	0.078	58.833	NA	NA	NA	81.67	NA	504.9	NA	19.72922383	NA	35.99564831	PW1766T2	3.428571429	3.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0781	192	8	1	0.125	7qE3	chr7-3489103-145323643	2	1	1	0.722	2.8285978	NA	1	0.30597436	sgMsh2 aCD4/8	autochthonous
chr7	86811847	86811847	C	T	ENSMUST00000164996.1	5	ENSMUSG00000090949	missense	P/S	794	Vmn2r77	ENSMUST00000164996.1:c.2380C>T	ENSMUSP00000129540.1:p.Pro794Ser	H-2-Kb	9	4	8	SVWITFLSV	SVWITFLPV	NetMHC	156.93	87.32	0.556	359	0.156	358.839	220.666	0.615	87.32	156.93	209	313	232.3325184	404.6783774	279.4151821	477.8042407	PW1766T2	1.842857143	1.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.16	359	0	0	NA	7qD3	chr7-3489103-145323643	2	1	1	0.722	2.8285978	NA	1	0.626836078	sgMsh2 aCD4/8	autochthonous
chr7	111073802	111073802	CA	C	ENSMUST00000163014.1	2	ENSMUSG00000005610	FS	F/X	121	Eif4g2	ENSMUST00000163014.1:c.361del	ENSMUSP00000123811.1:p.Phe121LeufsTer16	H-2-Kb	9	13	0	VNLAWFLFF	NA	SMM	112.23	NA	NA	192	0.078	163.513	NA	NA	NA	208.38	NA	229.9	NA	112.230268	NA	118.6451528	PW1766T2	2.414285714	2.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0781	192	8	1	0.125	7qE3	chr7-3489103-145323643	2	1	1	0.722	2.8285978	NA	1	0.30597436	sgMsh2 aCD4/8	autochthonous
chr7	119638187	119638187	G	T	ENSMUST00000047929.12	1	ENSMUSG00000033533	missense	R/L	241	Acsm1	ENSMUST00000047929.12:c.722G>T	ENSMUSP00000036140.6:p.Arg241Leu	H-2-Kb	9	6	6	QGLAFLSYI	QGLAFRSYI	NetMHC	210.57	298.75	1.419	110	0.145	447.477	732.141	1.636	298.75	210.57	334.2	224.9	1130.082111	670.0543022	1493.653979	931.6440185	PW1766T2	2.085714286	2.085714286	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.159	110	0	0	NA	7qF2	chr7-3489103-145323643	2	1	1	0.722	2.8285978	NA	1	0.622918352	sgMsh2 aCD4/8	autochthonous
chr7	108103974	108103974	T	C	ENSMUST00000215159.2	3	ENSMUSG00000078118	missense	Y/H	222	Olfr483	ENSMUST00000215159.2:c.664T>C	ENSMUSP00000150898.2:p.Tyr222His	H-2-Kb	9	7	5	IVISHSYIL	IVISYSYIL	SMM	150.006	120.257	0.802	499	0.038	187.725	109.103	0.581	97.95	220.85	55.8	154.6	120.2568988	150.006473	213.4273146	268.0711022	PW1766T2	0.957142857	1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.039	499	0	0	NA	7qE3	chr7-3489103-145323643	2	1	1	0.722	2.8285978	NA	1	0.152791294	sgMsh2 aCD4/8	autochthonous
chr7	111073802	111073802	CA	C	ENSMUST00000163014.1	2	ENSMUSG00000005610	FS	F/X	121	Eif4g2	ENSMUST00000163014.1:c.361del	ENSMUSP00000123811.1:p.Phe121LeufsTer16	H-2-Kb	9	15	0	LAWFLFFLL	NA	SMMPMBEC	108.455	NA	NA	192	0.078	173.845	NA	NA	NA	237	NA	503.2	NA	110.690411	NA	108.4551052	PW1766T2	2.7	2.7	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0781	192	8	1	0.125	7qE3	chr7-3489103-145323643	2	1	1	0.722	2.8285978	NA	1	0.30597436	sgMsh2 aCD4/8	autochthonous
chr7	23865604	23865604	TG	T	ENSMUST00000073967.3	NA	ENSMUSG00000057513	FS	P/X	282	Vmn1r177	ENSMUST00000073967.3:c.846del	ENSMUSP00000073621.3:p.Thr283LeufsTer7	H-2-Kb	9	8	5	SSFPLFLPC	SSFPTISPL	NetMHCpan	103.2	38.9	0.377	270	0.063	306.198	80.415	0.263	28.25	309.53	38.9	103.2	121.9298389	387.3557436	177.1128208	302.8656361	PW1766T2	1.785714286	1.785714286	FALSE	TRUE	FALSE	1	FALSE	0	Strelka2;Vardict	2	0.063	270	0	0	NA	7qA3	chr7-3489103-145323643	2	1	1	0.722	2.8285978	NA	1	0.246816706	sgMsh2 aCD4/8	autochthonous
chr8	124231596	124231596	T	C	ENSMUST00000034458.8	1	ENSMUSG00000089704	missense	Y/H	24	Galnt2	ENSMUST00000034458.8:c.70T>C	ENSMUSP00000034458.8:p.Tyr24His	H-2-Kb	9	6	6	IAYYMHSGG	IAYYMYSGG	SMMPMBEC	203.353	63.716	0.313	18	0.278	269.855	62.133	0.23	53.92	327.82	141.6	637.7	60.54942175	211.8897751	63.71621954	203.3527266	PW1766T2	-0.785714286	0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.353	18	17	5	0.294117647	8qE2	chr8-3439317-128493272	3	2	1	0.722	2.8285978	NA	1	1	sgMsh2 aCD4/8	autochthonous
chr7	108103974	108103974	T	C	ENSMUST00000215159.2	3	ENSMUSG00000078118	missense	Y/H	222	Olfr483	ENSMUST00000215159.2:c.664T>C	ENSMUSP00000150898.2:p.Tyr222His	H-2-Kb	9	11	1	HSYILITIL	YSYILITIL	SMM	311.968	199.118	0.638	499	0.038	326.929	177.073	0.542	155.88	484.24	150.8	318.7	199.1177609	311.967965	198.2668013	335.1583163	PW1766T2	2.728571429	2.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.039	499	0	0	NA	7qE3	chr7-3489103-145323643	2	1	1	0.722	2.8285978	NA	1	0.152791294	sgMsh2 aCD4/8	autochthonous
chr7	111073802	111073802	CA	C	ENSMUST00000163014.1	2	ENSMUSG00000005610	FS	F/X	121	Eif4g2	ENSMUST00000163014.1:c.361del	ENSMUSP00000123811.1:p.Phe121LeufsTer16	H-2-Kb	9	4	8	SALLRFFLT	SALLRFFFD	SMM	205.641	416.975	2.028	192	0.078	405.987	2666.192	6.567	6087.81	579.03	4870.8	599.4	416.9749833	205.6411387	461.5832068	232.9431801	PW1766T2	1.685714286	2.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0781	192	8	1	0.125	7qE3	chr7-3489103-145323643	2	1	1	0.722	2.8285978	NA	1	0.30597436	sgMsh2 aCD4/8	autochthonous
chr7	103881753	103881753	C	A	ENSMUST00000216303.1	5	ENSMUSG00000058200	missense	W/C	163	Olfr66	ENSMUST00000216303.1:c.489G>T	ENSMUSP00000149058.1:p.Trp163Cys	H-2-Kb	9	6	6	IMPLFCFPY	IMPLFWFPY	SMM	125.924	59.581	0.473	379	0.084	466.421	316.407	0.678	537.48	730.89	1106	1118.9	59.58130345	125.9244318	95.33447955	201.9528563	PW1766T2	1.057142857	2.385714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.082	379	0	0	NA	7qE3	chr7-3489103-145323643	2	1	1	0.722	2.8285978	NA	1	0.32125349	sgMsh2 aCD4/8	autochthonous
chr7	111073802	111073802	CA	C	ENSMUST00000163014.1	2	ENSMUSG00000005610	FS	F/X	121	Eif4g2	ENSMUST00000163014.1:c.361del	ENSMUSP00000123811.1:p.Phe121LeufsTer16	H-2-Kb	9	3	9	VSALLRFFL	VSALLRFFF	NetMHCpan	333.1	1318.3	3.958	192	0.078	487.251	1138.023	2.336	1722.42	743.48	1318.3	333.1	709.7575157	420.8332054	957.7452351	553.6687348	PW1766T2	2.042857143	2.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0781	192	8	1	0.125	7qE3	chr7-3489103-145323643	2	1	1	0.722	2.8285978	NA	1	0.30597436	sgMsh2 aCD4/8	autochthonous
chrX	124131244	124131244	G	GA	ENSMUST00000094491.4	5	ENSMUSG00000072049	FS	F/FX	463	Vmn2r121	ENSMUST00000094491.4:c.1388dup	ENSMUSP00000092067.3:p.Ile464HisfsTer32	H-2-Kb	9	6	7	TEYDIFHHL	TEYDIFIIW	SMMPMBEC	364.964	2124.467	5.821	201	0.04	484.992	8094.952	16.691	13384.95	1161.7	12591.5	562.5	3598.404656	407.4834739	2124.467052	364.9639766	PW1766T2	-0.014285714	-0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.04	201	0	0	NA	XqE3	NA	NA	NA	NA	0.722	2.8285978	NA	NA	NA	sgMsh2 aCD4/8	autochthonous
chr11	70437362	70437362	GA	G	ENSMUST00000108568.9	1	ENSMUSG00000060216	FS	E/X	157	Arrb2	ENSMUST00000108568.9:c.475del	ENSMUSP00000104208.3:p.Ser159ValfsTer43	H-2-Db	9	26	0	YSLLLRHPV	NA	NetMHC	36.55	NA	NA	56	0.071	88.161	NA	NA	NA	36.55	NA	90.1	NA	86.2223787	NA	110.5528645	PW1826T10	0.9	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.095	56	34	0	0	11qB3	chr11-69590981-121956809	4	2	2	0.843	5.480373814	RARE KARYOTYPE	1	0.617598473	sgMsh2 aCD4/8	autochthonous
chr4	133412086	133412086	C	T	ENSMUST00000030669.7	1	ENSMUSG00000028854	missense	A/V	205	Slc9a1	ENSMUST00000030669.7:c.614C>T	ENSMUSP00000030669.7:p.Ala205Val	H-2-Db	9	6	6	GTLWNVFFL	GTLWNAFFL	NetMHC	156.19	94.03	0.602	71	0.268	246.94	217.154	0.879	94.03	156.19	193	250.9	292.8329887	330.0806	241.3070442	242.9797047	PW1826T10	1.857142857	1.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.272	71	13	0	0	4qD2.3	chr4-6393150-155091012	5	4	1	0.843	5.480373814	RARE KARYOTYPE	2	1	sgMsh2 aCD4/8	autochthonous
chr8	79061068	79061068	G	A	ENSMUST00000098614.8	1	ENSMUSG00000071064	missense	A/T	288	Zfp827	ENSMUST00000098614.8:c.862G>A	ENSMUSP00000096214.2:p.Ala288Thr	H-2-Db	9	4	8	ASMTSSATL	ASMTSSAAL	NetMHCpan	245.9	505.9	2.057	26	0.231	367.212	730.615	1.99	778.3	293.24	505.9	245.9	745.7959146	441.18425	715.4346992	444.1912508	PW1826T10	0.642857143	0.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.28	26	9	0	0	8qC1	chr8-3154030-126969919	6	4	2	0.843	5.480373814	RARE KARYOTYPE	2	1	sgMsh2 aCD4/8	autochthonous
chr11	70437362	70437362	GA	G	ENSMUST00000108568.9	1	ENSMUSG00000060216	FS	E/X	157	Arrb2	ENSMUST00000108568.9:c.475del	ENSMUSP00000104208.3:p.Ser159ValfsTer43	H-2-Kb	8	22	0	SSERYSLL	NA	NetMHC	27.93	NA	NA	56	0.071	44.264	NA	NA	NA	27.93	NA	120.3	NA	49.28786429	NA	39.24099402	PW1826T10	-0.471428571	-0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.095	56	34	0	0	11qB3	chr11-69590981-121956809	4	2	2	0.843	5.480373814	RARE KARYOTYPE	1	0.617598473	sgMsh2 aCD4/8	autochthonous
chr1	132991887	132991890	CTGTT	C	ENSMUST00000067398.12	1	ENSMUSG00000054387	FS	QT/X	413-414	Mdm4	ENSMUST00000067398.12:c.1239_1242del	ENSMUSP00000068661.6:p.Thr414IlefsTer20	H-2-Kb	8	12	1	IFFLSRKL	NA	SMM	73.239	NA	NA	158	0.089	92.131	NA	NA	NA	108.88	NA	99.2	NA	73.23859428	NA	85.06286381	PW1826T10	0.571428571	0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0886	158	84	0	0	1qE4	chr1-4839315-195062457	6	4	2	0.843	5.480373814	RARE KARYOTYPE	1	0.575991839	sgMsh2 aCD4/8	autochthonous
chr19	39992492	39992492	C	T	ENSMUST00000049178.2	1	ENSMUSG00000042248	missense	S/L	18	Cyp2c37	ENSMUST00000049178.2:c.53C>T	ENSMUSP00000045362.2:p.Ser18Leu	H-2-Kb	8	4	8	LSCLFLLL	LSCLFLLS	SMMPMBEC	57.114	1029.769	18.03	180	0.156	102.986	4138.535	40.185	12568.07	134.73	7247.3	168.5	943.4958625	71.24263926	1029.769442	57.11366107	PW1826T10	2.814285714	2.814285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.147	180	0	0	NA	19qC3	chr19-4320845-61225035	6	3	3	0.843	5.480373814	RARE KARYOTYPE	1	0.955652373	sgMsh2 aCD4/8	autochthonous
chr14	65077032	65077032	T	C	ENSMUST00000225633.1	NA	ENSMUSG00000021978	missense	I/V	234	Extl3	ENSMUST00000225633.1:c.700A>G	ENSMUSP00000153547.1:p.Ile234Val	H-2-Kb	8	11	1	VACLYVVL	IACLYVVL	SMMPMBEC	44.334	43.225	0.975	79	0.101	77.523	83.879	1.082	184.8	155.62	117.9	108.3	49.85859086	46.74552051	43.22549746	44.33431473	PW1826T10	2.714285714	2.771428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.12	79	14	1	0.071428571	14qD1	chr14-3072210-123348696	6	4	2	0.843	5.480373814	RARE KARYOTYPE	1	0.780124386	sgMsh2 aCD4/8	autochthonous
chr4	133412086	133412086	C	T	ENSMUST00000030669.7	1	ENSMUSG00000028854	missense	A/V	205	Slc9a1	ENSMUST00000030669.7:c.614C>T	ENSMUSP00000030669.7:p.Ala205Val	H-2-Kb	8	11	1	VFFLGGLL	AFFLGGLL	SMMPMBEC	109.33	374.749	3.428	71	0.268	131.064	513.505	3.918	802.83	192.69	577.5	142.8	449.5106648	119.3273511	374.7485835	109.3301641	PW1826T10	2.314285714	2.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.272	71	13	0	0	4qD2.3	chr4-6393150-155091012	5	4	1	0.843	5.480373814	RARE KARYOTYPE	2	1	sgMsh2 aCD4/8	autochthonous
chr1	58540143	58540143	T	A	ENSMUST00000097724.9	1	ENSMUSG00000038174	missense	Y/F	245	Fam126b	ENSMUST00000097724.9:c.734A>T	ENSMUSP00000095331.3:p.Tyr245Phe	H-2-Kb	8	7	5	LTGVFYAM	LTGVYYAM	NetMHC	317.01	410.15	1.294	130	0.108	342.488	429.313	1.254	410.15	317.01	410.1	319.6	564.598864	459.9811133	448.476819	365.3759857	PW1826T10	1.185714286	1.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.119	130	22	1	0.045454545	1qC1.3	chr1-4839315-195062457	6	4	2	0.843	5.480373814	RARE KARYOTYPE	1	0.77362335	sgMsh2 aCD4/8	autochthonous
chr12	111103759	111103759	C	T	ENSMUST00000116388.3	1	ENSMUSG00000037896	missense	T/M	232	Rcor1	ENSMUST00000116388.3:c.695C>T	ENSMUSP00000112089.3:p.Thr232Met	H-2-Kb	8	9	3	ATMVLRQL	ATTVLRQL	NetMHCpan	309.3	3608.3	11.666	42	0.071	363.671	2112.588	5.809	3171.42	397.17	3608.3	309.3	1053.755853	491.7450535	990.238939	330.1718172	PW1826T10	0.714285714	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.1	42	37	3	0.081081081	12qF1	chr12-3252726-119465464	6	4	2	0.843	5.480373814	RARE KARYOTYPE	1	0.650103655	sgMsh2 aCD4/8	autochthonous
chrX	152242099	152242099	TC	T	ENSMUST00000112588.8	1	ENSMUSG00000025332	FS	I/X	195	Kdm5c	ENSMUST00000112588.8:c.589del	ENSMUSP00000108207.2:p.Leu197PhefsTer37	H-2-Kb	8	9	5	HSIPFDSL	HSIPLRQS	SMM	246.456	13543.783	54.954	48	0.083	303.683	20584.447	67.783	32532.85	420.98	24960.5	348.7	13543.78341	246.456343	16208.39455	258.6663888	PW1826T10	0.628571429	0.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0833	48	21	2	0.095238095	XqF3	NA	NA	NA	NA	0.843	5.480373814	RARE KARYOTYPE	NA	NA	sgMsh2 aCD4/8	autochthonous
chr4	133412086	133412086	C	T	ENSMUST00000030669.7	1	ENSMUSG00000028854	missense	A/V	205	Slc9a1	ENSMUST00000030669.7:c.614C>T	ENSMUSP00000030669.7:p.Ala205Val	H-2-Kb	8	10	2	NVFFLGGL	NAFFLGGL	NetMHCpan	162.1	143	0.882	71	0.268	365.445	376.482	1.03	517.96	679.36	143	162.1	378.2160895	384.3616066	374.7485835	346.5293309	PW1826T10	2.371428571	2.371428571	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.272	71	13	0	0	4qD2.3	chr4-6393150-155091012	5	4	1	0.843	5.480373814	RARE KARYOTYPE	2	1	sgMsh2 aCD4/8	autochthonous
chr7	104189824	104189824	T	C	ENSMUST00000106859.2	3	ENSMUSG00000044899	missense	I/V	128	Olfr649	ENSMUST00000106859.2:c.382A>G	ENSMUSP00000102472.1:p.Ile128Val	H-2-Kb	9	3	9	MAFDRYVAV	MAFDRYVAI	NetMHCpan	24.4	20	0.82	227	0.022	42.158	48.846	1.159	47.08	35.31	20	24.4	63.11171763	57.16234016	50.61159219	49.00608399	PW1826T10	0.528571429	0.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.03	227	0	0	NA	7qE3	chr7-3894485-142893198	6	4	2	0.843	5.480373814	RARE KARYOTYPE	1	0.195031097	sgMsh2 aCD4/8	autochthonous
chr6	132868647	132868647	G	A	ENSMUST00000082014.1	NA	ENSMUSG00000062952	missense	V/M	214	Tas2r110	ENSMUST00000082014.1:c.640G>A	ENSMUSP00000080674.1:p.Val214Met	H-2-Kb	9	11	1	MSLVAFLML	VSLVAFLML	NetMHC	55.97	21.23	0.379	489	0.031	148.609	57.172	0.385	21.23	55.97	36.7	98.1	77.64437528	199.1177609	101.6833861	263.1782532	PW1826T10	3.157142857	3.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.03	489	0	0	NA	6qG1	chr6-3994124-149014300	7	4	3	0.843	5.480373814	RARE KARYOTYPE	1	0.195031097	sgMsh2 aCD4/8	autochthonous
chr11	70437362	70437362	GA	G	ENSMUST00000108568.9	1	ENSMUSG00000060216	FS	E/X	157	Arrb2	ENSMUST00000108568.9:c.475del	ENSMUSP00000104208.3:p.Ser159ValfsTer43	H-2-Kb	9	21	0	LSSERYSLL	NA	NetMHC	69.39	NA	NA	56	0.071	108.021	NA	NA	NA	69.39	NA	112.7	NA	112.230268	NA	103.8125837	PW1826T10	-0.471428571	-0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.095	56	34	0	0	11qB3	chr11-69590981-121956809	4	2	2	0.843	5.480373814	RARE KARYOTYPE	1	0.617598473	sgMsh2 aCD4/8	autochthonous
chr4	133412086	133412086	C	T	ENSMUST00000030669.7	1	ENSMUSG00000028854	missense	A/V	205	Slc9a1	ENSMUST00000030669.7:c.614C>T	ENSMUSP00000030669.7:p.Ala205Val	H-2-Kb	9	9	3	WNVFFLGGL	WNAFFLGGL	NetMHC	108.73	182.22	1.676	71	0.268	198.424	226.377	1.141	182.22	108.73	186	167.1	266.7534224	239.9440583	295.9715726	229.7470798	PW1826T10	2.371428571	2.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.272	71	13	0	0	4qD2.3	chr4-6393150-155091012	5	4	1	0.843	5.480373814	RARE KARYOTYPE	2	1	sgMsh2 aCD4/8	autochthonous
chr11	70437362	70437362	GA	G	ENSMUST00000108568.9	1	ENSMUSG00000060216	FS	E/X	157	Arrb2	ENSMUST00000108568.9:c.475del	ENSMUSP00000104208.3:p.Ser159ValfsTer43	H-2-Kb	9	22	0	SSERYSLLL	NA	NetMHC	217.93	NA	NA	56	0.071	470.09	NA	NA	NA	217.93	NA	674.5	NA	471.0966327	NA	469.0833305	PW1826T10	0.185714286	0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.095	56	34	0	0	11qB3	chr11-69590981-121956809	4	2	2	0.843	5.480373814	RARE KARYOTYPE	1	0.617598473	sgMsh2 aCD4/8	autochthonous
chrX	127394496	127394496	C	A	ENSMUST00000051530.3	NA	ENSMUSG00000049815	missense	H/Q	19	4921511C20Rik	ENSMUST00000051530.3:c.57C>A	ENSMUSP00000059542.3:p.His19Gln	H-2-Kb	9	6	6	INRKFQHYF	INRKFHHYF	NetMHCpan	183.9	102.7	0.558	47	0.085	287.167	152.102	0.53	102.78	263.8	102.7	183.9	201.4234359	310.5346024	229.7470798	406.6773641	PW1826T10	-1.542857143	-1.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.111	47	0	0	NA	XqE3	NA	NA	NA	NA	0.843	5.480373814	RARE KARYOTYPE	NA	NA	sgMsh2 aCD4/8	autochthonous
chr19	39992492	39992492	C	T	ENSMUST00000049178.2	1	ENSMUSG00000042248	missense	S/L	18	Cyp2c37	ENSMUST00000049178.2:c.53C>T	ENSMUSP00000045362.2:p.Ser18Leu	H-2-Kb	9	4	8	LSCLFLLLL	LSCLFLLSL	SMMPMBEC	158.581	194.648	1.227	180	0.156	231.078	239.554	1.037	224.36	275.9	336.3	779.2	254.7475407	186.2558834	194.6480243	158.5805793	PW1826T10	3.471428571	3.471428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.147	180	0	0	NA	19qC3	chr19-4320845-61225035	6	3	3	0.843	5.480373814	RARE KARYOTYPE	1	0.955652373	sgMsh2 aCD4/8	autochthonous
chr8	79061068	79061068	G	A	ENSMUST00000098614.8	1	ENSMUSG00000071064	missense	A/T	288	Zfp827	ENSMUST00000098614.8:c.862G>A	ENSMUSP00000096214.2:p.Ala288Thr	H-2-Kb	9	4	8	ASMTSSATL	ASMTSSAAL	NetMHC	315	238	0.756	26	0.231	486.046	452.982	0.932	238	315	307.4	336.6	598.5631826	635.4918716	635.696763	684.3054518	PW1826T10	0.642857143	0.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.28	26	9	0	0	8qC1	chr8-3154030-126969919	6	4	2	0.843	5.480373814	RARE KARYOTYPE	2	1	sgMsh2 aCD4/8	autochthonous
chr1	132991887	132991890	CTGTT	C	ENSMUST00000067398.12	1	ENSMUSG00000054387	FS	QT/X	413-414	Mdm4	ENSMUST00000067398.12:c.1239_1242del	ENSMUSP00000068661.6:p.Thr414IlefsTer20	H-2-Kb	9	11	2	QIFFLSRKL	NA	NetMHCpan	250.4	NA	NA	158	0.089	390.17	NA	NA	NA	334.57	NA	250.4	NA	445.7691405	NA	609.8878759	PW1826T10	0.571428571	0.728571429	TRUE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0886	158	84	0	0	1qE4	chr1-4839315-195062457	6	4	2	0.843	5.480373814	RARE KARYOTYPE	1	0.575991839	sgMsh2 aCD4/8	autochthonous
chr6	119970964	119970964	C	T	ENSMUST00000088644.12	5	ENSMUSG00000045962	missense	R/H	505	Wnk1	ENSMUST00000088644.12:c.1514G>A	ENSMUSP00000086017.6:p.Arg505His	H-2-Kb	9	4	8	IAIKLWLHI	IAIKLWLRI	NetMHCpan	175.6	188.6	1.074	116	0.034	375.234	342	0.911	395.43	434.41	188.6	175.6	395.4667729	426.6875784	288.5692163	323.779986	PW1826T10	1.228571429	1.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.045	116	79	1	0.012658228	6qF1	chr6-3994124-149014300	7	4	3	0.843	5.480373814	RARE KARYOTYPE	1	0.292546645	sgMsh2 aCD4/8	autochthonous
chr1	58540143	58540143	T	A	ENSMUST00000097724.9	1	ENSMUSG00000038174	missense	Y/F	245	Fam126b	ENSMUST00000097724.9:c.734A>T	ENSMUSP00000095331.3:p.Tyr245Phe	H-2-Kb	9	10	2	VFYAMYNGQ	VYYAMYNGQ	SMM	68.724	69.52	1.012	130	0.108	274.59	396.603	1.444	704.03	456.87	3147.1	3851.2	69.52003787	68.72424857	89.17641311	92.31026548	PW1826T10	-0.9	0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.119	130	22	1	0.045454545	1qC1.3	chr1-4839315-195062457	6	4	2	0.843	5.480373814	RARE KARYOTYPE	1	0.77362335	sgMsh2 aCD4/8	autochthonous
chr14	65077032	65077032	T	C	ENSMUST00000225633.1	NA	ENSMUSG00000021978	missense	I/V	234	Extl3	ENSMUST00000225633.1:c.700A>G	ENSMUSP00000153547.1:p.Ile234Val	H-2-Kb	9	11	1	VACLYVVLV	IACLYVVLV	SMMPMBEC	278.131	368.341	1.324	79	0.101	466.068	636.521	1.366	657.71	514.2	1158	1101	615.3327071	417.9362099	368.3409467	278.131386	PW1826T10	3.057142857	3.057142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.12	79	14	1	0.071428571	14qD1	chr14-3072210-123348696	6	4	2	0.843	5.480373814	RARE KARYOTYPE	1	0.780124386	sgMsh2 aCD4/8	autochthonous
chr5	120787988	120787988	TA	T	ENSMUST00000201172.1	1	ENSMUSG00000066867	FS	F/X	338	Oas1e	ENSMUST00000201172.1:c.1014del	ENSMUSP00000144529.1:p.Phe338LeufsTer9	H-2-Kb	9	3	9	QTWIHSNFL	QTWIHSNFF	SMM	353.273	595.813	1.687	170	0.065	438.717	1086.733	2.477	1632.29	536.12	1327.7	388.5	595.8130345	353.2726369	845.7655669	488.9337312	PW1826T10	0.385714286	0.385714286	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.069	170	1	0	0	5qF	chr5-3582301-151648293	6	4	2	0.843	5.480373814	RARE KARYOTYPE	1	0.448571522	sgMsh2 aCD4/8	autochthonous
chr8	47065979	47065979	C	A	ENSMUST00000039840.14	1	ENSMUSG00000038173	missense	L/M	261	Enpp6	ENSMUST00000039840.14:c.781C>A	ENSMUSP00000044608.7:p.Leu261Met	H-2-Kb	9	6	6	SNYISMDDL	SNYISLDDL	SMMPMBEC	337.482	301.474	0.893	93	0.065	413.553	382.185	0.924	489.77	589.68	439.2	401.4	325.1696473	425.7062242	301.4740949	337.4815227	PW1826T10	0.157142857	0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.081	93	0	0	NA	8qB1.1	chr8-3154030-126969919	6	4	2	0.843	5.480373814	RARE KARYOTYPE	1	0.526583961	sgMsh2 aCD4/8	autochthonous
chrX	127394496	127394496	C	A	ENSMUST00000051530.3	NA	ENSMUSG00000049815	missense	H/Q	19	4921511C20Rik	ENSMUST00000051530.3:c.57C>A	ENSMUSP00000059542.3:p.His19Gln	H-2-Kb	9	8	4	RKFQHYFVM	RKFHHYFVM	SMMPMBEC	337.482	282.651	0.838	47	0.085	410.716	343.584	0.837	831.57	1023.06	375.2	445.5	311.967965	375.9326101	282.6506575	337.4815227	PW1826T10	0.528571429	0.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.111	47	0	0	NA	XqE3	NA	NA	NA	NA	0.843	5.480373814	RARE KARYOTYPE	NA	NA	sgMsh2 aCD4/8	autochthonous
chr3	5241884	5241884	CA	C	ENSMUST00000026284.12	5	ENSMUSG00000025255	FS	K/X	57	Zfhx4	ENSMUST00000026284.12:c.172del	ENSMUSP00000026284.6:p.Ser58ValfsTer51	H-2-Db	9	18	0	SALRMQLPL	NA	NetMHCpan	35.3	NA	NA	215	0.023	49.577	NA	NA	NA	45.25	NA	35.3	NA	53.90387667	NA	57.22291797	PW1826T3	0.528571429	0.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.029	215	0	0	NA	3qA1	NA	NA	NA	NA	0.785	3.703665647	POOR GOF (77%)	NA	NA	sgMsh2 aCD4/8	autochthonous
chr10	102388256	102388256	GA	G	ENSMUST00000179929.7	5	ENSMUSG00000019888	FS	R/X	110	Mgat4c	ENSMUST00000179929.7:c.336del	ENSMUSP00000135959.1:p.Gly113GlufsTer20	H-2-Db	9	22	0	SQFLNSPAM	NA	NetMHCpan	34.2	NA	NA	179	0.078	96.235	NA	NA	NA	95.95	NA	34.2	NA	96.52059712	NA	108.7852465	PW1826T3	0.628571429	0.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.081	179	0	0	NA	10qD1	chr10-4453448-130453386	3	2	1	0.785	3.703665647	POOR GOF (77%)	1	0.382161678	sgMsh2 aCD4/8	autochthonous
chr3	5241884	5241884	CA	C	ENSMUST00000026284.12	5	ENSMUSG00000025255	FS	K/X	57	Zfhx4	ENSMUST00000026284.12:c.172del	ENSMUSP00000026284.6:p.Ser58ValfsTer51	H-2-Db	9	47	0	RNIWNTTAL	NA	NetMHC	117.34	NA	NA	215	0.023	175.783	NA	NA	NA	117.34	NA	147.1	NA	204.4654817	NA	208.7228518	PW1826T3	0.614285714	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.029	215	0	0	NA	3qA1	NA	NA	NA	NA	0.785	3.703665647	POOR GOF (77%)	NA	NA	sgMsh2 aCD4/8	autochthonous
chr5	150401625	150401625	G	A	ENSMUST00000087204.8	5	ENSMUSG00000056602	missense	G/D	1169	Fry	ENSMUST00000087204.8:c.3506G>A	ENSMUSP00000084454.5:p.Gly1169Asp	H-2-Db	9	5	7	SAVLCCDPV	SAVLCCGPV	NetMHC	142.23	1804.88	12.69	150	0.04	228.36	1406.763	6.16	1804.88	142.23	1581.5	180.3	1232.02636	320.3465122	928.0470616	276.420342	PW1826T3	1.728571429	1.728571429	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;Vardict	3	0.038	150	1	0	0	5qG3	chr5-3582301-150560224	4	3	1	0.785	3.703665647	POOR GOF (77%)	1	0.179285726	sgMsh2 aCD4/8	autochthonous
chr5	44014795	44014795	C	A	ENSMUST00000074113.12	1	ENSMUSG00000029086	missense	G/V	627	Prom1	ENSMUST00000074113.12:c.1880G>T	ENSMUSP00000073751.6:p.Gly627Val	H-2-Db	9	7	5	FAHSVIDTI	FAHSGIDTI	NetMHCpan	192	93.7	0.488	354	0.071	273.658	121.596	0.444	30.65	359.5	93.7	192	149.4927049	229.9428977	197.9566064	317.3730167	PW1826T3	0.714285714	0.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.063	354	156	8	0.051282051	5qB3	chr5-3582301-150560224	4	3	1	0.785	3.703665647	POOR GOF (77%)	1	0.297236861	sgMsh2 aCD4/8	autochthonous
chr7	109766585	109766585	T	G	ENSMUST00000033331.6	1	ENSMUSG00000034825	missense	K/T	75	Nrip3	ENSMUST00000033331.6:c.224A>C	ENSMUSP00000033331.6:p.Lys75Thr	H-2-Db	9	4	8	LMETNLSTL	LMETNLSKL	SMM	196.164	958.562	4.887	139	0.259	324.615	2021.872	6.229	2983.1	448.52	3628.4	592.1	958.5615401	196.1643123	1060.64488	200.7104571	PW1826T3	-0.228571429	0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.265	139	2	2	1	7qE3	chr7-4692757-143062472	4	2	2	0.785	3.703665647	POOR GOF (77%)	1	1	sgMsh2 aCD4/8	autochthonous
chr7	85738051	85738051	C	G	ENSMUST00000063425.8	5	ENSMUSG00000051877	missense	R/S	768	Vmn2r72	ENSMUST00000063425.8:c.2304G>C	ENSMUSP00000133014.1:p.Arg768Ser	H-2-Kb	8	6	6	VAFLASNL	VAFLARNL	NetMHC	6.43	8.34	1.297	360	0.042	11.107	14.644	1.318	8.34	6.43	12	8	17.28781076	14.21477533	21.96544469	17.89534189	PW1826T3	1.385714286	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.039	360	0	0	NA	7qD3	chr7-4692757-143062472	4	2	2	0.785	3.703665647	POOR GOF (77%)	1	0.184003771	sgMsh2 aCD4/8	autochthonous
chr7	85738079	85738079	G	T	ENSMUST00000063425.8	5	ENSMUSG00000051877	missense	T/K	759	Vmn2r72	ENSMUST00000063425.8:c.2276C>A	ENSMUSP00000133014.1:p.Thr759Lys	H-2-Kb	8	11	1	KSFTVAFL	TSFTVAFL	NetMHC	14.57	10.22	0.701	435	0.037	20.38	13.975	0.686	10.22	14.57	22.2	31.7	13.63766443	19.44195797	14.31330745	21.31768301	PW1826T3	1.985714286	1.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.036	435	0	0	NA	7qD3	chr7-4692757-143062472	4	2	2	0.785	3.703665647	POOR GOF (77%)	1	0.169849635	sgMsh2 aCD4/8	autochthonous
chr3	84594268	84594268	A	G	ENSMUST00000062623.3	NA	ENSMUSG00000047819	missense	Q/R	164	Tigd4	ENSMUST00000062623.3:c.491A>G	ENSMUSP00000052320.3:p.Gln164Arg	H-2-Kb	8	6	6	STVWYRNV	STVWYQNV	NetMHC	15.66	18.58	1.186	250	0.1	51.725	64.299	1.243	18.58	15.66	46.8	44.6	81.79749427	58.84912366	110.0880046	71.73646964	PW1826T3	-0.357142857	-0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.113	250	0	0	NA	3qF1	chr3-10385869-159911278	4	2	2	0.785	3.703665647	POOR GOF (77%)	1	0.533139131	sgMsh2 aCD4/8	autochthonous
chr2	118712465	118712465	T	C	ENSMUST00000102524.7	2	ENSMUSG00000040061	missense	H/R	779	Plcb2	ENSMUST00000102524.7:c.2336A>G	ENSMUSP00000099583.1:p.His779Arg	H-2-Kb	8	8	4	SGYRHLCL	SGYHHLCL	NetMHC	19	71.7	3.774	130	0.046	42.735	79.775	1.867	71.7	19	56.2	38.4	87.8496428	47.06954498	95.8826437	53.91877292	PW1826T3	0.1	0.1	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.05	130	10	0	0	2qE5	chr2-4610906-181631782	5	3	2	0.785	3.703665647	POOR GOF (77%)	1	0.235902271	sgMsh2 aCD4/8	autochthonous
chr7	28544266	28544266	G	A	ENSMUST00000057974.3	1	ENSMUSG00000047586	missense	H/Y	248	Nccrp1	ENSMUST00000057974.3:c.742C>T	ENSMUSP00000055562.2:p.His248Tyr	H-2-Kb	8	9	3	VSYVFRQY	VSHVFRQY	SMMPMBEC	23.864	243.075	10.186	37	0.189	32.314	797.029	24.665	1120.1	24.38	1435.3	107.8	473.9581548	40.2476011	243.0748352	23.86382195	PW1826T3	-0.628571429	0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.216	37	0	0	NA	7qB1	chr7-4692757-143062472	4	2	2	0.785	3.703665647	POOR GOF (77%)	1	1	sgMsh2 aCD4/8	autochthonous
chr2	89591025	89591025	CA	C	ENSMUST00000217254.1	5	ENSMUSG00000111715	FS	L/X	30	Olfr1246	ENSMUST00000217254.1:c.89del	ENSMUSP00000150876.1:p.Leu30CysfsTer6	H-2-Kb	8	8	4	VMFCSSTL	NA	NetMHCpan	23	NA	NA	308	0.179	72.082	NA	NA	NA	57.12	NA	23	NA	87.04423244	NA	116.8799454	PW1826T3	1.242857143	1.3	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.179	308	0	0	NA	2qE1	chr2-4610906-181631782	5	3	2	0.785	3.703665647	POOR GOF (77%)	1	0.844530128	sgMsh2 aCD4/8	autochthonous
chr11	70610300	70610300	A	C	ENSMUST00000072237.12	5	ENSMUSG00000020827	missense	D/A	914	Mink1	ENSMUST00000072237.12:c.2741A>C	ENSMUSP00000072091.6:p.Asp914Ala	H-2-Kb	8	11	1	ASNGYTNL	DSNGYTNL	SMM	54.669	256.886	4.699	110	0.1	59.186	1291.665	21.824	2273.06	60.73	3192.1	116.7	256.8857419	54.66885777	310.2701531	57.64212727	PW1826T3	-0.914285714	-0.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.107	110	121	10	0.082644628	11qB3	chr11-69590981-121956809	3	2	1	0.785	3.703665647	POOR GOF (77%)	1	0.504830859	sgMsh2 aCD4/8	autochthonous
chr7	45623332	45623332	GA	G	ENSMUST00000033100.4	1	ENSMUSG00000064158	FS	K/X	92	Izumo1	ENSMUST00000033100.4:c.275del	ENSMUSP00000033100.4:p.Lys92ArgfsTer3	H-2-Kb	8	5	7	ATWSFLRI	ATWSFLKD	NetMHCpan	38.1	10122.2	265.675	307	0.036	79.749	5652.267	70.876	13941.16	81.74	10122.2	38.1	1182.333514	112.3931906	763.3786332	77.75709016	PW1826T3	0.6	0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.045	307	0	0	NA	7qB3	chr7-4692757-143062472	4	2	2	0.785	3.703665647	POOR GOF (77%)	1	0.212312043	sgMsh2 aCD4/8	autochthonous
chr2	75937798	75937798	C	T	ENSMUST00000099996.4	NA	ENSMUSG00000075273	missense	A/T	204	Ttc30b	ENSMUST00000099996.4:c.610G>A	ENSMUSP00000097576.3:p.Ala204Thr	H-2-Kb	8	6	6	SSRQYTPA	SSRQYAPA	NetMHC	159.2	37.03	0.233	488	0.027	176.13	61.017	0.346	37.03	159.2	444.2	991	62.91294278	179.7794304	59.12075887	172.480499	PW1826T3	-1.514285714	-1.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.027	488	15	0	0	2qC3	chr2-4610906-181631782	5	3	2	0.785	3.703665647	POOR GOF (77%)	1	0.127387226	sgMsh2 aCD4/8	autochthonous
chr3	5241884	5241884	CA	C	ENSMUST00000026284.12	5	ENSMUSG00000025255	FS	K/X	57	Zfhx4	ENSMUST00000026284.12:c.172del	ENSMUSP00000026284.6:p.Ser58ValfsTer51	H-2-Kb	8	17	0	VSALRMQL	NA	NetMHC	174.47	NA	NA	215	0.023	289.423	NA	NA	NA	174.47	NA	254.7	NA	324.1455024	NA	373.0267702	PW1826T3	0.357142857	0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.029	215	0	0	NA	3qA1	NA	NA	NA	NA	0.785	3.703665647	POOR GOF (77%)	NA	NA	sgMsh2 aCD4/8	autochthonous
chr18	37708601	37708601	C	A	ENSMUST00000195823.1	1	ENSMUSG00000103793	missense	S/Y	458	Pcdhga6	ENSMUST00000195823.1:c.1373C>A	ENSMUSP00000141803.1:p.Ser458Tyr	H-2-Kb	8	7	5	RSSYYVYV	RSSYSVYV	NetMHCpan	197.7	3416.3	17.28	365	0.025	408.359	6642.588	16.267	5086.57	293.43	3416.3	197.7	8198.605697	529.3464441	9241.447486	523.2870654	PW1826T3	0.414285714	0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.027	365	1	0	0	18qB3	chr18-3325290-89769213	4	2	2	0.785	3.703665647	POOR GOF (77%)	1	0.127387226	sgMsh2 aCD4/8	autochthonous
chr3	5241884	5241884	CA	C	ENSMUST00000026284.12	5	ENSMUSG00000025255	FS	K/X	57	Zfhx4	ENSMUST00000026284.12:c.172del	ENSMUSP00000026284.6:p.Ser58ValfsTer51	H-2-Kb	8	42	0	LFPVYRNI	NA	NetMHC	364.18	NA	NA	215	0.023	396.971	NA	NA	NA	364.18	NA	864.3	NA	393.3145385	NA	400.6268017	PW1826T3	0.085714286	0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.029	215	0	0	NA	3qA1	NA	NA	NA	NA	0.785	3.703665647	POOR GOF (77%)	NA	NA	sgMsh2 aCD4/8	autochthonous
chr3	5241884	5241884	CA	C	ENSMUST00000026284.12	5	ENSMUSG00000025255	FS	K/X	57	Zfhx4	ENSMUST00000026284.12:c.172del	ENSMUSP00000026284.6:p.Ser58ValfsTer51	H-2-Kb	8	53	0	TALMPAFL	NA	SMMPMBEC	322.656	NA	NA	215	0.023	369.922	NA	NA	NA	412.7	NA	450.1	NA	327.1447838	NA	322.6561891	PW1826T3	2.042857143	2.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.029	215	0	0	NA	3qA1	NA	NA	NA	NA	0.785	3.703665647	POOR GOF (77%)	NA	NA	sgMsh2 aCD4/8	autochthonous
chr6	21216887	21216887	G	A	ENSMUST00000081542.5	1	ENSMUSG00000060882	missense	V/I	197	Kcnd2	ENSMUST00000081542.5:c.589G>A	ENSMUSP00000080257.5:p.Val197Ile	H-2-Kb	8	4	8	VTGFFIAI	VTGFFIAV	NetMHCpan	128.6	169.5	1.318	175	0.274	203.964	146.653	0.719	307.44	479.3	169.5	128.6	116.611129	211.7093311	123.8055176	196.218522	PW1826T3	2.185714286	2.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.258	175	0	0	NA	6qA2	chr6-3994124-149055161	4	2	2	0.785	3.703665647	POOR GOF (77%)	1	1	sgMsh2 aCD4/8	autochthonous
chr16	9761791	9761791	C	T	ENSMUST00000199708.4	5	ENSMUSG00000059003	missense	V/M	203	Grin2a	ENSMUST00000199708.4:c.607G>A	ENSMUSP00000142900.1:p.Val203Met	H-2-Kb	8	4	8	VGWDMQNM	VGWDMQNV	NetMHCpan	287.1	550.9	1.919	243	0.025	462.772	494.584	1.069	650.44	517.89	550.9	287.1	402.476011	451.5855118	438.2682402	473.9581548	PW1826T3	-1.142857143	-0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.023	243	0	0	NA	16qA1	chr16-3948854-97850976	4	3	1	0.785	3.703665647	POOR GOF (77%)	1	0.108515044	sgMsh2 aCD4/8	autochthonous
chr7	28544266	28544266	G	A	ENSMUST00000057974.3	1	ENSMUSG00000047586	missense	H/Y	248	Nccrp1	ENSMUST00000057974.3:c.742C>T	ENSMUSP00000055562.2:p.His248Tyr	H-2-Kb	9	9	3	VSYVFRQYG	VSHVFRQYG	NetMHC	52.79	1499.87	28.412	37	0.189	97.326	1066.323	10.956	1499.87	52.79	1896.6	96	561.1900987	98.65293264	632.7760017	116.4796347	PW1826T3	-0.571428571	0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.216	37	0	0	NA	7qB1	chr7-4692757-143062472	4	2	2	0.785	3.703665647	POOR GOF (77%)	1	1	sgMsh2 aCD4/8	autochthonous
chr9	48657167	48657167	G	A	ENSMUST00000093852.4	1	ENSMUSG00000066687	missense	T/M	666	Zbtb16	ENSMUST00000093852.4:c.1997C>T	ENSMUSP00000091374.3:p.Thr666Met	H-2-Kb	9	13	2	KMYLYLCYV	KTYLYLCYV	SMM	45.72	121.37	2.655	43	0.209	61.05	84.54	1.385	47.71	54.1	39.8	68	121.3696222	45.72039776	154.6144216	68.11613539	PW1826T3	1.485714286	1.485714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.238	43	9	4	0.444444444	9qA5.3	chr9-3342997-124127352	3	2	1	0.785	3.703665647	POOR GOF (77%)	1	1	sgMsh2 aCD4/8	autochthonous
chr2	75937798	75937798	C	T	ENSMUST00000099996.4	NA	ENSMUSG00000075273	missense	A/T	204	Ttc30b	ENSMUST00000099996.4:c.610G>A	ENSMUSP00000097576.3:p.Ala204Thr	H-2-Kb	9	6	6	SSRQYTPAL	SSRQYAPAL	NetMHC	56.22	47.01	0.836	488	0.027	172.159	201.457	1.17	47.01	56.22	104.3	115.7	298.6138865	228.6177783	360.7862685	258.9703239	PW1826T3	-0.857142857	-0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.027	488	15	0	0	2qC3	chr2-4610906-181631782	5	3	2	0.785	3.703665647	POOR GOF (77%)	1	0.127387226	sgMsh2 aCD4/8	autochthonous
chr3	5241884	5241884	CA	C	ENSMUST00000026284.12	5	ENSMUSG00000025255	FS	K/X	57	Zfhx4	ENSMUST00000026284.12:c.172del	ENSMUSP00000026284.6:p.Ser58ValfsTer51	H-2-Kb	9	18	0	SALRMQLPL	NA	NetMHC	98.98	NA	NA	215	0.023	229.413	NA	NA	NA	98.98	NA	179.5	NA	279.3251239	NA	343.7557727	PW1826T3	0.528571429	0.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.029	215	0	0	NA	3qA1	NA	NA	NA	NA	0.785	3.703665647	POOR GOF (77%)	NA	NA	sgMsh2 aCD4/8	autochthonous
chr7	104644817	104644817	T	C	ENSMUST00000089296.2	1	ENSMUSG00000070421	missense	H/R	185	Olfr658	ENSMUST00000089296.2:c.554A>G	ENSMUSP00000086711.2:p.His185Arg	H-2-Kb	9	4	8	INHTYCDRM	INHTYCDHM	NetMHC	131.4	133.54	1.016	552	0.031	216.636	238.583	1.101	133.54	131.4	217	201.4	335.0502914	310.5346024	260.1656766	231.8729034	PW1826T3	-1.257142857	-0.742857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.024	552	1	0	0	7qE3	chr7-4692757-143062472	4	2	2	0.785	3.703665647	POOR GOF (77%)	1	0.11323309	sgMsh2 aCD4/8	autochthonous
chr7	125571570	125571570	C	A	ENSMUST00000033004.7	1	ENSMUSG00000030748	missense	P/H	218	Il4ra	ENSMUST00000033004.7:c.653C>A	ENSMUSP00000033004.6:p.Pro218His	H-2-Kb	9	11	1	HSITWYNHF	PSITWYNHF	NetMHC	167.8	699.47	4.168	122	0.033	179.149	434.696	2.426	699.47	167.8	1732.6	256.9	149.3172559	170.2589693	169.9221522	188.039895	PW1826T3	-0.328571429	-0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.043	122	342	8	0.023391813	7qF3	chr7-4692757-143062472	4	2	2	0.785	3.703665647	POOR GOF (77%)	1	0.202875953	sgMsh2 aCD4/8	autochthonous
chr2	89493646	89493646	G	A	ENSMUST00000216001.1	5	ENSMUSG00000075085	missense	S/F	222	Olfr1242	ENSMUST00000216001.1:c.665C>T	ENSMUSP00000149368.1:p.Ser222Phe	H-2-Kb	9	3	9	VSYGIILNF	VSYGIILNS	NetMHCpan	131.7	1705.3	12.948	373	0.035	154.996	1106.291	7.138	3566	224.46	1705.3	131.7	337.3727491	151.0462682	507.2826396	158.9461453	PW1826T3	1.485714286	2.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.041	373	0	0	NA	2qE1	chr2-4610906-181631782	5	3	2	0.785	3.703665647	POOR GOF (77%)	1	0.193439862	sgMsh2 aCD4/8	autochthonous
chr3	84594268	84594268	A	G	ENSMUST00000062623.3	NA	ENSMUSG00000047819	missense	Q/R	164	Tigd4	ENSMUST00000062623.3:c.491A>G	ENSMUSP00000052320.3:p.Gln164Arg	H-2-Kb	9	6	6	STVWYRNVL	STVWYQNVL	NetMHCpan	176.6	183.4	1.039	250	0.1	318.59	344.695	1.082	267.45	239.76	183.4	176.6	440.6664633	430.63567	421.9393213	397.4202571	PW1826T3	0.285714286	0.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.113	250	0	0	NA	3qF1	chr3-10385869-159911278	4	2	2	0.785	3.703665647	POOR GOF (77%)	1	0.533139131	sgMsh2 aCD4/8	autochthonous
chr6	103665940	103665940	C	T	ENSMUST00000066905.8	1	ENSMUSG00000030077	missense	T/M	213	Chl1	ENSMUST00000066905.8:c.638C>T	ENSMUSP00000063933.6:p.Thr213Met	H-2-Kb	9	4	8	AAFPKLRMI	AAFPKLRTI	NetMHC	321.05	476.98	1.486	155	0.039	490.726	530.286	1.081	476.98	321.05	352	475.5	583.5929005	505.9527957	629.8686601	521.4948213	PW1826T3	0.428571429	0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.049	155	0	0	NA	6qE1	chr6-3994124-149055161	4	2	2	0.785	3.703665647	POOR GOF (77%)	1	0.231184225	sgMsh2 aCD4/8	autochthonous
chr7	76766404	76766404	TG	T	ENSMUST00000156166.7	1	ENSMUSG00000025754	FS	M/X	976	Agbl1	ENSMUST00000156166.7:c.2932del	ENSMUSP00000119721.2:p.Val978PhefsTer29	H-2-Kb	9	5	9	VVVWREMGF	VVVWREMGV	SMM	220.348	293.839	1.334	123	0.073	292.823	332.691	1.136	334.06	329.64	1039.6	785.7	293.8393807	220.3484501	331.3217908	256.0059151	PW1826T3	-0.057142857	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.087	123	0	0	NA	7qD1	chr7-4692757-143062472	4	2	2	0.785	3.703665647	POOR GOF (77%)	1	0.410469951	sgMsh2 aCD4/8	autochthonous
chr1	67214065	67214065	C	T	ENSMUST00000027144.7	1	ENSMUSG00000025991	missense	P/S	1239	Cps1	ENSMUST00000027144.7:c.3715C>T	ENSMUSP00000027144.7:p.Pro1239Ser	H-2-Kb	9	8	4	ISGSFNVQF	ISGPFNVQF	SMMPMBEC	282.001	401.098	1.422	136	0.309	378.231	642.206	1.698	648.92	386.54	820.3	881.2	635.4918716	369.9218633	401.0975415	282.000579	PW1826T3	0.228571429	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.301	136	0	0	NA	1qC3	chr1-4839315-194950953	3	2	1	0.785	3.703665647	POOR GOF (77%)	1	1	sgMsh2 aCD4/8	autochthonous
chr10	102388256	102388256	GA	G	ENSMUST00000179929.7	5	ENSMUSG00000019888	FS	R/X	110	Mgat4c	ENSMUST00000179929.7:c.336del	ENSMUSP00000135959.1:p.Gly113GlufsTer20	H-2-Kb	9	22	0	SQFLNSPAM	NA	NetMHC	459.29	NA	NA	179	0.078	473.675	NA	NA	NA	459.29	NA	469.7	NA	477.6502397	NA	752.0556875	PW1826T3	0.628571429	0.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.081	179	0	0	NA	10qD1	chr10-4453448-130453386	3	2	1	0.785	3.703665647	POOR GOF (77%)	1	0.382161678	sgMsh2 aCD4/8	autochthonous
chr18	37708601	37708601	C	A	ENSMUST00000195823.1	1	ENSMUSG00000103793	missense	S/Y	458	Pcdhga6	ENSMUST00000195823.1:c.1373C>A	ENSMUSP00000141803.1:p.Ser458Tyr	H-2-Kb	9	8	4	SSYYVYVSE	SSYSVYVSE	SMMPMBEC	146.639	175.489	1.197	365	0.025	370.078	459.365	1.241	743.24	580.16	1320	1323.1	160.7348318	159.9963223	175.4890407	146.6391721	PW1826T3	0.028571429	0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.027	365	1	0	0	18qB3	chr18-3325290-89769213	4	2	2	0.785	3.703665647	POOR GOF (77%)	1	0.127387226	sgMsh2 aCD4/8	autochthonous
chr3	84594268	84594268	A	G	ENSMUST00000062623.3	NA	ENSMUSG00000047819	missense	Q/R	164	Tigd4	ENSMUST00000062623.3:c.491A>G	ENSMUSP00000052320.3:p.Gln164Arg	H-2-Kb	9	8	4	VWYRNVLPY	VWYQNVLPY	SMM	118.062	126.797	1.074	250	0.1	495.473	648.538	1.309	1090.42	788.06	3789.9	2614.4	126.7972983	118.061963	206.6569426	202.8850284	PW1826T3	-0.6	0.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.113	250	0	0	NA	3qF1	chr3-10385869-159911278	4	2	2	0.785	3.703665647	POOR GOF (77%)	1	0.533139131	sgMsh2 aCD4/8	autochthonous
chr4	128618087	128618087	CA	C	ENSMUST00000074829.3	NA	ENSMUSG00000062545	FS	F/X	123	Tlr12	ENSMUST00000074829.3:c.369del	ENSMUSP00000074381.2:p.Phe123LeufsTer19	H-2-Kb	8	6	6	QSLSFLTL	QSLSFFDS	NetMHC	19.49	6519.37	334.498	45	0.489	41.724	4104.4	98.371	6519.37	19.49	7935.5	29.9	945.6708451	53.5475987	1689.429215	75.29046857	PW1826T7	1.7	1.7	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.467	45	0	0	NA	4qD2.2	chr4-3834436-156218971	3	2	1	0.782	3.94452241	NA	2	1	sgMsh2 aCD4/8	autochthonous
chr9	96688584	96688584	AT	A	ENSMUST00000152594.7	2	ENSMUSG00000040433	FS	N/X	149	Zbtb38	ENSMUST00000152594.7:c.446del	ENSMUSP00000121753.1:p.Asn149MetfsTer37	H-2-Kb	8	26	0	SQTRFPSL	NA	NetMHC	84.07	NA	NA	234	0.034	113.173	NA	NA	NA	84.07	NA	94.6	NA	131.7467771	NA	162.0839455	PW1826T7	-0.642857143	-0.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.038	234	40	0	0	9qE3.3	chr9-6288603-124127224	4	2	2	0.782	3.94452241	NA	1	0.19167756	sgMsh2 aCD4/8	autochthonous
chr4	128618087	128618087	CA	C	ENSMUST00000074829.3	NA	ENSMUSG00000062545	FS	F/X	123	Tlr12	ENSMUST00000074829.3:c.369del	ENSMUSP00000074381.2:p.Phe123LeufsTer19	H-2-Kb	8	8	4	LSFLTLLL	LSFFDSPL	NetMHCpan	88.4	51.3	0.58	45	0.489	174.296	63.668	0.365	61.76	179.65	51.3	88.4	80.11982647	210.2519343	65.5752568	168.9429215	PW1826T7	2.357142857	2.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.467	45	0	0	NA	4qD2.2	chr4-3834436-156218971	3	2	1	0.782	3.94452241	NA	2	1	sgMsh2 aCD4/8	autochthonous
chr13	23233006	23233006	G	GA	ENSMUST00000235574.1	NA	ENSMUSG00000061022	FS	F/FX	12	Vmn1r222	ENSMUST00000235574.1:c.35dup	ENSMUSP00000157499.1:p.Phe13LeufsTer26	H-2-Kb	8	21	0	EYFCFCGL	NA	SMMPMBEC	286.906	NA	NA	165	0.133	462.598	NA	NA	NA	892.29	NA	593.5	NA	331.6958211	NA	286.906244	PW1826T7	1.814285714	1.814285714	TRUE	FALSE	FALSE	2	FALSE	0	Strelka2;Vardict	2	0.1333	165	0	0	NA	13qA3.1	chr13-6560583-119495179	4	2	2	0.782	3.94452241	NA	1	0.672384702	sgMsh2 aCD4/8	autochthonous
chr4	128618087	128618087	CA	C	ENSMUST00000074829.3	NA	ENSMUSG00000062545	FS	F/X	123	Tlr12	ENSMUST00000074829.3:c.369del	ENSMUSP00000074381.2:p.Phe123LeufsTer19	H-2-Kb	9	6	6	QSLSFLTLL	QSLSFFDSP	NetMHC	18.69	4630.66	247.761	45	0.489	52.615	2796.413	53.148	4630.66	18.69	8666.4	40.5	360.6699835	64.73065476	962.1659863	130.3917158	PW1826T7	2.357142857	2.357142857	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.467	45	0	0	NA	4qD2.2	chr4-3834436-156218971	3	2	1	0.782	3.94452241	NA	2	1	sgMsh2 aCD4/8	autochthonous
chr11	50853238	50853238	A	G	ENSMUST00000171427.7	5	ENSMUSG00000000617	missense	T/A	179	Grm6	ENSMUST00000171427.7:c.535A>G	ENSMUSP00000130728.1:p.Thr179Ala	H-2-Kb	9	11	1	ARYDFFSRV	TRYDFFSRV	NetMHC	25.82	24.4	0.945	55	0.073	83.255	68.816	0.827	24.4	25.82	78.2	89.4	65.48020042	77.10987516	72.15227015	90.83432641	PW1826T7	-0.042857143	-0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.077	55	0	0	NA	11qB1.3	chr11-3133205-69579350	3	2	1	0.782	3.94452241	NA	1	0.388399265	sgMsh2 aCD4/8	autochthonous
chr4	128618087	128618087	CA	C	ENSMUST00000074829.3	NA	ENSMUSG00000062545	FS	F/X	123	Tlr12	ENSMUST00000074829.3:c.369del	ENSMUSP00000074381.2:p.Phe123LeufsTer19	H-2-Kb	9	19	0	SFYLLMPSV	NA	NetMHC	128.9	NA	NA	45	0.489	210.602	NA	NA	NA	128.9	NA	173.4	NA	247.8049629	NA	298.0231495	PW1826T7	1.428571429	1.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.467	45	0	0	NA	4qD2.2	chr4-3834436-156218971	3	2	1	0.782	3.94452241	NA	2	1	sgMsh2 aCD4/8	autochthonous
chr18	40257380	40257380	TC	T	ENSMUST00000096572.1	NA	ENSMUSG00000051401	FS	F/X	135	Kctd16	ENSMUST00000096572.1:c.411del	ENSMUSP00000094323.1:p.Asp138IlefsTer5	H-2-Kb	9	6	9	LGSTFFPPI	LGSTFFPPD	NetMHCpan	75.9	6335.5	83.472	284	0.028	408.409	4125.12	10.1	10627.47	239.72	6335.5	75.9	1914.740838	743.2073569	1493.653979	577.0985724	PW1826T7	0.771428571	0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.035	284	4	0	0	18qB3	chr18-10104325-89769213	3	2	1	0.782	3.94452241	NA	1	0.176545121	sgMsh2 aCD4/8	autochthonous
chr9	96688584	96688584	AT	A	ENSMUST00000152594.7	2	ENSMUSG00000040433	FS	N/X	149	Zbtb38	ENSMUST00000152594.7:c.446del	ENSMUSP00000121753.1:p.Asn149MetfsTer37	H-2-Kb	9	25	0	GSQTRFPSL	NA	NetMHC	306.58	NA	NA	234	0.034	339.456	NA	NA	NA	306.58	NA	358.1	NA	390.9399022	NA	320.8115533	PW1826T7	-0.642857143	-0.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.038	234	40	0	0	9qE3.3	chr9-6288603-124127224	4	2	2	0.782	3.94452241	NA	1	0.19167756	sgMsh2 aCD4/8	autochthonous
chr11	88834689	88834689	G	T	ENSMUST00000018572.10	1	ENSMUSG00000018428	missense	L/I	779	Akap1	ENSMUST00000018572.10:c.2335C>A	ENSMUSP00000018572.4:p.Leu779Ile	H-2-Kb	9	10	2	VILDSVVPL	VLLDSVVPL	NetMHCpan	293	693.7	2.368	77	0.351	337.398	1108.734	3.286	1176.95	314.84	693.7	293	1374.390042	402.8190492	1040.518964	359.9564831	PW1826T7	1.442857143	2.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.362	77	82	50	0.609756098	11qC	chr11-69590981-121956809	3	2	1	0.782	3.94452241	NA	1	1	sgMsh2 aCD4/8	autochthonous
chr5	114330236	114330236	C	A	ENSMUST00000202006.3	5	ENSMUSG00000066952	missense	S/Y	364	Myo1h	ENSMUST00000202006.3:c.1091C>A	ENSMUSP00000144110.1:p.Ser364Tyr	H-2-Db	9	11	1	YSLVNKDFT	SSLVNKDFT	NetMHC	9.7	19.86	2.047	205	0.278	49.116	82.101	1.672	19.86	9.7	150.8	47.7	89.45816798	64.36058753	74.74290958	50.5324087	PW1829T10	-0.114285714	-0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.275	205	0	0	NA	5qF	chr5-3582301-150063600	4	2	2	0.846	4.002714121	NA	1	1	sgMsh2 aCD4/8	autochthonous
chr5	101953072	101953072	AG	A	ENSMUST00000053177.13	1	ENSMUSG00000043940	FS	P/X	226	Wdfy3	ENSMUST00000053177.13:c.678del	ENSMUSP00000052607.7:p.Tyr227IlefsTer14	H-2-Db	10	3	10	SAITSWCPPI	SAITSWCPPY	NetMHCpan	137.6	8444.3	61.368	130	0.046	308.297	5090.39	16.511	15136.49	138.79	8444.3	137.6	1556.861575	477.8042407	1736.480857	618.9705696	PW1829T10	0.2	0.8	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.06	130	7	1	0.142857143	5qE5	chr5-3582301-150063600	4	2	2	0.846	4.002714121	NA	1	0.283880434	sgMsh2 aCD4/8	autochthonous
chrX	79505181	79505181	T	A	ENSMUST00000197180.5	5	ENSMUSG00000073077	missense	K/N	433	Cfap47	ENSMUST00000197180.5:c.1299A>T	ENSMUSP00000142707.2:p.Lys433Asn	H-2-Kb	8	5	7	VMYHFKNT	VMYHFKKT	NetMHC	21.13	132.25	6.259	64	0.094	52.36	154.781	2.956	132.25	21.13	131.1	53.7	310.9853997	77.22181412	177.3127641	51.01994663	PW1829T10	-1.128571429	-0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.1	64	0	0	NA	XqB	NA	NA	NA	NA	0.846	4.002714121	NA	NA	NA	sgMsh2 aCD4/8	autochthonous
chr5	89122420	89122420	GA	G	ENSMUST00000156238.7	5	ENSMUSG00000060961	FS	K/X	276	Slc4a4	ENSMUST00000156238.7:c.831del	ENSMUSP00000121744.1:p.Lys277AsnfsTer38	H-2-Kb	8	28	0	TSWTLPSL	NA	NetMHCpan	71.4	NA	NA	71	0.113	113.964	NA	NA	NA	131.11	NA	71.4	NA	124.9510759	NA	102.9769442	PW1829T10	0.4	0.4	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1127	71	34	0	0	5qE1	chr5-3582301-150063600	4	2	2	0.846	4.002714121	NA	1	0.533222082	sgMsh2 aCD4/8	autochthonous
chr5	114330236	114330236	C	A	ENSMUST00000202006.3	5	ENSMUSG00000066952	missense	S/Y	364	Myo1h	ENSMUST00000202006.3:c.1091C>A	ENSMUSP00000144110.1:p.Ser364Tyr	H-2-Kb	8	6	6	VNRINYSL	VNRINSSL	NetMHC	201.79	1992.02	9.872	205	0.278	336.894	679.503	2.017	1992.02	201.79	931.7	332.8	348.1288376	340.9887101	427.3069928	447.4453509	PW1829T10	-0.757142857	-0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.275	205	0	0	NA	5qF	chr5-3582301-150063600	4	2	2	0.846	4.002714121	NA	1	1	sgMsh2 aCD4/8	autochthonous
chr2	153399446	153399446	AG	A	ENSMUST00000109790.1	5	ENSMUSG00000042548	FS	G/X	640	Asxl1	ENSMUST00000109790.1:c.1925del	ENSMUSP00000105413.1:p.Gly642ValfsTer58	H-2-Kb	8	33	0	VVMVVRPV	NA	NetMHC	253.25	NA	NA	74	0.095	329.794	NA	NA	NA	253.25	NA	280.5	NA	467.4552051	NA	379.0879676	PW1829T10	1.8	1.8	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0946	74	27	4	0.148148148	2qH1	chr2-4896529-181684255	4	2	2	0.846	4.002714121	NA	1	0.447584818	sgMsh2 aCD4/8	autochthonous
chr7	6502068	6502068	T	C	ENSMUST00000213549.1	5	ENSMUSG00000093877	missense	I/V	53	Olfr1348	ENSMUST00000213549.1:c.157A>G	ENSMUSP00000150128.1:p.Ile53Val	H-2-Kb	8	10	2	LVFSHKEL	LIFSHKEL	NetMHCpan	101.7	118.6	1.166	283	0.071	275.852	197.275	0.715	210.4	285.79	118.6	101.7	204.9934573	321.9141004	189.5570756	265.9132635	PW1829T10	-0.085714286	-0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.077	283	0	0	NA	7qA1	chr7-4692757-143497059	4	2	2	0.846	4.002714121	NA	1	0.364313224	sgMsh2 aCD4/8	autochthonous
chr2	153399446	153399446	AG	A	ENSMUST00000109790.1	5	ENSMUSG00000042548	FS	G/X	640	Asxl1	ENSMUST00000109790.1:c.1925del	ENSMUSP00000105413.1:p.Gly642ValfsTer58	H-2-Kb	8	36	0	VVRPVATL	NA	SMM	210.737	NA	NA	74	0.095	296.367	NA	NA	NA	295.06	NA	306	NA	210.7366151	NA	297.6733808	PW1829T10	1.028571429	1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0946	74	27	4	0.148148148	2qH1	chr2-4896529-181684255	4	2	2	0.846	4.002714121	NA	1	0.447584818	sgMsh2 aCD4/8	autochthonous
chrX	4952469	4952469	AT	A	ENSMUST00000178143.1	NA	ENSMUSG00000094860	FS	F/X	84	Btbd35f27	ENSMUST00000178143.1:c.254del	ENSMUSP00000137066.1:p.Leu85TrpfsTer46	H-2-Kb	8	29	0	VYTKYFYV	NA	NetMHCpan	214.5	NA	NA	162	0.049	399.289	NA	NA	NA	324.62	NA	214.5	NA	473.9581548	NA	539.1877292	PW1829T10	-0.214285714	-0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.047	162	0	0	NA	XqA1.1	NA	NA	NA	NA	0.846	4.002714121	NA	NA	NA	sgMsh2 aCD4/8	autochthonous
chr5	89122420	89122420	GA	G	ENSMUST00000156238.7	5	ENSMUSG00000060961	FS	K/X	276	Slc4a4	ENSMUST00000156238.7:c.831del	ENSMUSP00000121744.1:p.Lys277AsnfsTer38	H-2-Kb	8	36	0	PLFAYSRL	NA	SMMPMBEC	144.79	NA	NA	71	0.113	215.233	NA	NA	NA	353.6	NA	277.8	NA	152.6651821	NA	144.7904774	PW1829T10	0.8	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1127	71	34	0	0	5qE1	chr5-3582301-150063600	4	2	2	0.846	4.002714121	NA	1	0.533222082	sgMsh2 aCD4/8	autochthonous
chr5	14676972	14676972	A	C	ENSMUST00000030691.16	5	ENSMUSG00000061601	missense	E/A	1948	Pclo	ENSMUST00000030691.16:c.5843A>C	ENSMUSP00000030691.9:p.Glu1948Ala	H-2-Kb	8	11	1	AFYELESL	EFYELESL	SMM	234.283	1485.046	6.339	127	0.055	271.814	2354.991	8.664	5386.73	388.73	3100.3	243.2	1485.04632	234.2825811	1609.681675	300.4277187	PW1829T10	0.185714286	0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.051	127	0	0	NA	5qA1	chr5-3582301-150063600	4	2	2	0.846	4.002714121	NA	1	0.241298369	sgMsh2 aCD4/8	autochthonous
chrX	4952469	4952469	AT	A	ENSMUST00000178143.1	NA	ENSMUSG00000094860	FS	F/X	84	Btbd35f27	ENSMUST00000178143.1:c.254del	ENSMUSP00000137066.1:p.Leu85TrpfsTer46	H-2-Kb	8	40	0	TLLTFSKV	NA	NetMHCpan	252.9	NA	NA	162	0.049	395.935	NA	NA	NA	440.52	NA	252.9	NA	441.3061706	NA	351.3500341	PW1829T10	1.314285714	1.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.047	162	0	0	NA	XqA1.1	NA	NA	NA	NA	0.846	4.002714121	NA	NA	NA	sgMsh2 aCD4/8	autochthonous
chr19	12935522	12935522	G	T	ENSMUST00000214079.1	5	ENSMUSG00000049498	missense	Q/H	261	Olfr1449	ENSMUST00000214079.1:c.783G>T	ENSMUSP00000149217.1:p.Gln261His	H-2-Kb	8	5	7	VIFMYLHP	VIFMYLQP	SMMPMBEC	57.775	74.087	1.282	172	0.326	256.089	329.174	1.285	708.47	684.22	577.3	451.4	81.04757034	60.77710368	74.08665723	57.7750061	PW1829T10	0.985714286	1.814285714	FALSE	FALSE	TRUE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.304	172	0	0	NA	19qA	chr19-4352434-60987573	4	2	2	0.846	4.002714121	NA	1	1	sgMsh2 aCD4/8	autochthonous
chr17	87718631	87718651	ATTCGTCAGACCGGGGTGATTG	A	ENSMUST00000024967.13	1	ENSMUSG00000024151	inframe_del	IRQTGVIV/I	679-686	Msh2	ENSMUST00000024967.13:c.2037_2057del	ENSMUSP00000024967.7:p.Arg680_Val686del	H-2-Kb	9	8	5	STYILMAQI	GVIVLMAQI	NetMHC	35.88	2753.5	76.742	52	0.327	106.298	2379.24	22.383	2753.5	35.88	4649.6	64.6	2004.979793	233.9429705	1359.09558	147.9960077	PW1829T10	1.671428571	1.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.3269	52	36	0	0	17qE4	chr17-3077483-90208269	4	2	2	0.846	4.002714121	NA	2	1	sgMsh2 aCD4/8	autochthonous
chr5	114330236	114330236	C	A	ENSMUST00000202006.3	5	ENSMUSG00000066952	missense	S/Y	364	Myo1h	ENSMUST00000202006.3:c.1091C>A	ENSMUSP00000144110.1:p.Ser364Tyr	H-2-Kb	9	6	6	VNRINYSLV	VNRINSSLV	NetMHC	54.68	804.99	14.722	205	0.278	118.24	727.747	6.155	804.99	54.68	1520.3	136.2	427.6711949	106.6866308	650.5040428	129.7926202	PW1829T10	0.342857143	0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.275	205	0	0	NA	5qF	chr5-3582301-150063600	4	2	2	0.846	4.002714121	NA	1	1	sgMsh2 aCD4/8	autochthonous
chrX	79505181	79505181	T	A	ENSMUST00000197180.5	5	ENSMUSG00000073077	missense	K/N	433	Cfap47	ENSMUST00000197180.5:c.1299A>T	ENSMUSP00000142707.2:p.Lys433Asn	H-2-Kb	9	5	7	VMYHFKNTA	VMYHFKKTA	NetMHC	62.87	113.89	1.812	64	0.094	97.206	177.522	1.826	113.89	62.87	184	100.2	171.044849	94.21281926	199.1819593	121.9691508	PW1829T10	-1.142857143	-0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.1	64	0	0	NA	XqB	NA	NA	NA	NA	0.846	4.002714121	NA	NA	NA	sgMsh2 aCD4/8	autochthonous
chrX	4952469	4952469	AT	A	ENSMUST00000178143.1	NA	ENSMUSG00000094860	FS	F/X	84	Btbd35f27	ENSMUST00000178143.1:c.254del	ENSMUSP00000137066.1:p.Leu85TrpfsTer46	H-2-Kb	9	28	0	GVYTKYFYV	NA	SMM	95.304	NA	NA	162	0.049	106.634	NA	NA	NA	110.88	NA	190.9	NA	95.3037523	NA	102.3882217	PW1829T10	-0.214285714	-0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.047	162	0	0	NA	XqA1.1	NA	NA	NA	NA	0.846	4.002714121	NA	NA	NA	sgMsh2 aCD4/8	autochthonous
chr10	80395204	80395204	TG	T	ENSMUST00000105348.7	5	ENSMUSG00000035478	FS	Q/X	86	Mbd3	ENSMUST00000105348.7:c.256del	ENSMUSP00000100985.1:p.Gln86ArgfsTer6	H-2-Kb	9	6	6	RVFSPRASL	RVFSPQGKP	NetMHC	157.26	20549.84	130.674	82	0.122	330.366	14922.426	45.169	20549.84	157.26	23209.1	196.1	4551.033161	464.6329446	9295.012968	748.6003055	PW1829T10	0.1	0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.136	82	37	1	0.027027027	10qC1	chr10-4453448-130453386	4	3	1	0.846	4.002714121	NA	1	0.643462317	sgMsh2 aCD4/8	autochthonous
chrX	4952469	4952469	AT	A	ENSMUST00000178143.1	NA	ENSMUSG00000094860	FS	F/X	84	Btbd35f27	ENSMUST00000178143.1:c.254del	ENSMUSP00000137066.1:p.Leu85TrpfsTer46	H-2-Kb	9	33	0	YFYVSQATL	NA	NetMHC	168.62	NA	NA	162	0.049	267.59	NA	NA	NA	168.62	NA	228.2	NA	306.9799422	NA	425.8434778	PW1829T10	0.5	0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.047	162	0	0	NA	XqA1.1	NA	NA	NA	NA	0.846	4.002714121	NA	NA	NA	sgMsh2 aCD4/8	autochthonous
chr7	107182779	107182779	T	G	ENSMUST00000084763.4	1	ENSMUSG00000016626	missense	F/L	394	Nlrp14	ENSMUST00000084763.4:c.1182T>G	ENSMUSP00000081819.2:p.Phe394Leu	H-2-Kb	9	3	9	VQEFFAALL	VQEFFAALF	NetMHCpan	236.9	1039.6	4.388	184	0.027	413.416	896.822	2.169	866.58	326.51	1039.6	236.9	927.0646046	549.6800816	865.4659777	500.3224609	PW1829T10	1.9	1.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.034	184	0	0	NA	7qE3	chr7-4692757-143497059	4	2	2	0.846	4.002714121	NA	1	0.160865579	sgMsh2 aCD4/8	autochthonous
chr19	12935522	12935522	G	T	ENSMUST00000214079.1	5	ENSMUSG00000049498	missense	Q/H	261	Olfr1449	ENSMUST00000214079.1:c.783G>T	ENSMUSP00000149217.1:p.Gln261His	H-2-Kb	9	5	7	VIFMYLHPS	VIFMYLQPS	SMM	72.796	57.162	0.785	172	0.326	153.413	124.978	0.815	163.21	338.01	198.3	196.1	57.16234016	72.79641631	86.74610828	110.7260991	PW1829T10	0.228571429	1.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.304	172	0	0	NA	19qA	chr19-4352434-60987573	4	2	2	0.846	4.002714121	NA	1	1	sgMsh2 aCD4/8	autochthonous
chr14	61191977	61191977	T	G	ENSMUST00000089394.9	1	ENSMUSG00000048279	missense	L/R	495	Sacs	ENSMUST00000089394.9:c.1484T>G	ENSMUSP00000086816.3:p.Leu495Arg	H-2-Db	9	4	8	AALWNEYRI	AALWNEYLI	NetMHC	25.53	8.35	0.327	145	0.214	54.046	21.396	0.396	8.35	25.53	19.8	50.2	24.3567871	57.89219283	22.99164261	60.89336864	PW1829T2	-0.771428571	-0.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.213	145	0	0	NA	14qD1	chr14-3072210-123592557	5	3	2	0.784	4.465043995	POOR GOF (79.1%)	1	1	sgMsh2 aCD4/8	autochthonous
chr3	90192962	90192962	T	G	ENSMUST00000029548.8	5	ENSMUSG00000027939	missense	L/V	1432	Nup210l	ENSMUST00000029548.8:c.4294T>G	ENSMUSP00000029548.4:p.Leu1432Val	H-2-Db	9	3	9	YMALNRDDV	YMALNRDDL	NetMHC	39.69	26.95	0.679	123	0.041	144.492	78.87	0.546	26.95	39.69	72.7	143.9	85.03936332	145.0841601	92.59126126	160.5350989	PW1829T2	-0.742857143	-0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.054	123	0	0	NA	3qF1	chr3-3792373-159913826	5	3	2	0.784	4.465043995	POOR GOF (79.1%)	1	0.307541296	sgMsh2 aCD4/8	autochthonous
chr6	58672044	58672044	AT	A	ENSMUST00000031822.12	1	ENSMUSG00000029802	FS	D/X	291	Abcg2	ENSMUST00000031822.12:c.878del	ENSMUSP00000031822.6:p.Phe293SerfsTer12	H-2-Db	9	12	2	FSLMSSMEI	NA	NetMHC	195.08	NA	NA	283	0.06	350.641	NA	NA	NA	195.08	NA	195.9	NA	505.3822679	NA	530.3590695	PW1829T2	1	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.064	283	16	0	0	6qB3	chr6-3494310-148817892	5	3	2	0.784	4.465043995	POOR GOF (79.1%)	1	0.364493387	sgMsh2 aCD4/8	autochthonous
chr5	129696057	129696057	T	A	ENSMUST00000182386.2	5	ENSMUSG00000034219	missense	K/M	172	44453	ENSMUST00000182386.2:c.515A>T	ENSMUSP00000138729.1:p.Lys172Met	H-2-Db	9	8	4	HSLMSLDLL	HSLKSLDLL	NetMHCpan	329.5	774.5	2.351	129	0.047	466.08	800.859	1.718	1153.23	401.8	774.5	329.5	827.2180458	581.5941105	771.9159237	530.3590695	PW1829T2	1.828571429	1.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.045	129	0	0	NA	5qG1.3	chr5-3582301-150478141	4	3	1	0.784	4.465043995	POOR GOF (79.1%)	1	0.256284413	sgMsh2 aCD4/8	autochthonous
chr19	12862434	12862434	T	G	ENSMUST00000213606.1	5	ENSMUSG00000046272	missense	F/V	220	Olfr1444	ENSMUST00000213606.1:c.658T>G	ENSMUSP00000150212.1:p.Phe220Val	H-2-Kb	8	8	4	ISYVFIYI	ISYFFIYI	NetMHC	2.85	4.19	1.47	240	0.054	4.109	4.383	1.067	4.19	2.85	6.1	6.9	4.423234863	4.382682402	4.342501729	3.834775994	PW1829T2	1.8	1.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.054	240	0	0	NA	19qA	chr19-3378213-61225035	5	3	2	0.784	4.465043995	POOR GOF (79.1%)	1	0.307541296	sgMsh2 aCD4/8	autochthonous
chr3	64556096	64556096	G	A	ENSMUST00000165012.2	5	ENSMUSG00000090581	missense	A/V	350	Vmn2r6	ENSMUST00000165012.2:c.1049C>T	ENSMUSP00000131831.1:p.Ala350Val	H-2-Kb	8	4	8	AVYLLAHV	AVYLLAHA	NetMHC	11.35	170.42	15.015	539	0.009	48.319	354.574	7.338	170.42	11.35	470	36	417.5802981	69.94231455	291.5680954	60.63732022	PW1829T2	1.9	1.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.012	539	0	0	NA	3qE1	chr3-3792373-159913826	5	3	2	0.784	4.465043995	POOR GOF (79.1%)	1	0.06834251	sgMsh2 aCD4/8	autochthonous
chrX	72258525	72258525	G	A	ENSMUST00000064780.3	1	ENSMUSG00000031340	missense	R/W	687	Gabre	ENSMUST00000064780.3:c.2059C>T	ENSMUSP00000066543.3:p.Arg687Trp	H-2-Kb	8	8	4	VSRWFGFI	VSRRFGFI	NetMHC	21.7	16.84	0.776	85	0.729	45.423	34.701	0.764	16.84	21.7	53.6	44.1	33.94220093	46.74552051	35.46010359	54.41767718	PW1829T2	0.5	0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.729	85	3	2	0.666666667	XqA7.3	NA	NA	NA	NA	0.784	4.465043995	POOR GOF (79.1%)	NA	NA	sgMsh2 aCD4/8	autochthonous
chr5	75637385	75637385	AT	A	ENSMUST00000005815.6	1	ENSMUSG00000005672	FS	Y/X	444	Kit	ENSMUST00000005815.6:c.1336del	ENSMUSP00000005815.6:p.Cys446ValfsTer36	H-2-Kb	8	32	0	RMYLCHHL	NA	NetMHCpan	31.7	NA	NA	146	0.068	63.267	NA	NA	NA	36.43	NA	31.7	NA	101.0974031	NA	90.10315536	PW1829T2	0.614285714	0.614285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.075	146	3	0	0	5qC3.3	chr5-3582301-150478141	4	3	1	0.784	4.465043995	POOR GOF (79.1%)	1	0.427140688	sgMsh2 aCD4/8	autochthonous
chr19	12862434	12862434	T	G	ENSMUST00000213606.1	5	ENSMUSG00000046272	missense	F/V	220	Olfr1444	ENSMUST00000213606.1:c.658T>G	ENSMUSP00000150212.1:p.Phe220Val	H-2-Kb	8	6	6	IIISYVFI	IIISYFFI	NetMHCpan	60.5	61.8	1.021	240	0.054	66.679	58.424	0.876	65.79	79.21	61.8	60.5	55.04780419	70.58948282	50.78553127	62.76824703	PW1829T2	2.628571429	2.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.054	240	0	0	NA	19qA	chr19-3378213-61225035	5	3	2	0.784	4.465043995	POOR GOF (79.1%)	1	0.307541296	sgMsh2 aCD4/8	autochthonous
chr19	12862434	12862434	T	G	ENSMUST00000213606.1	5	ENSMUSG00000046272	missense	F/V	220	Olfr1444	ENSMUST00000213606.1:c.658T>G	ENSMUSP00000150212.1:p.Phe220Val	H-2-Kb	8	10	2	YVFIYIAI	YFFIYIAI	SMMPMBEC	87.85	96.104	1.094	240	0.054	92.969	188.547	2.028	280.99	91.37	653.6	96.6	84.67203545	94.56708451	96.10367602	87.8496428	PW1829T2	3	3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.054	240	0	0	NA	19qA	chr19-3378213-61225035	5	3	2	0.784	4.465043995	POOR GOF (79.1%)	1	0.307541296	sgMsh2 aCD4/8	autochthonous
chr13	21537130	21537130	T	G	ENSMUST00000218154.1	NA	ENSMUSG00000048996	missense	I/L	292	Olfr1366	ENSMUST00000218154.1:c.874A>C	ENSMUSP00000151506.1:p.Ile292Leu	H-2-Kb	8	8	4	ASVLFMVV	ASVIFMVV	NetMHC	124.75	173.43	1.39	83	0.048	166.842	206.097	1.235	173.43	124.75	226.8	182.6	198.0341096	163.9607892	214.1608096	169.7227266	PW1829T2	2.9	2.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.053	83	0	0	NA	13qA3.1	chr13-6560583-119495179	4	3	1	0.784	4.465043995	POOR GOF (79.1%)	1	0.301846086	sgMsh2 aCD4/8	autochthonous
chr2	70232465	70232465	TG	T	ENSMUST00000060208.10	5	ENSMUSG00000042064	FS	L/X	364	Myo3b	ENSMUST00000060208.10:c.1093del	ENSMUSP00000055362.3:p.Val365SerfsTer23	H-2-Kb	8	15	0	RSWTRTRL	NA	NetMHCpan	162.6	NA	NA	145	0.028	200.477	NA	NA	NA	217.41	NA	162.6	NA	263.475356	NA	183.5439188	PW1829T2	-1.185714286	-1.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.038	145	0	0	NA	2qC2	chr2-4925576-181511691	4	2	2	0.784	4.465043995	POOR GOF (79.1%)	1	0.216417949	sgMsh2 aCD4/8	autochthonous
chr14	23451620	23451620	T	G	ENSMUST00000188285.6	1	ENSMUSG00000063142	missense	K/T	636	Kcnma1	ENSMUST00000188285.6:c.1907A>C	ENSMUSP00000140275.1:p.Lys636Thr	H-2-Kb	8	6	6	IAIEYTSA	IAIEYKSA	NetMHC	263.09	1051.35	3.996	213	0.221	375.802	945.776	2.517	1051.35	263.09	928.3	340.7	963.2521787	484.9980584	754.6403103	410.9036509	PW1829T2	0.257142857	0.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.225	213	0	0	NA	14qA3	chr14-3072210-123592557	5	3	2	0.784	4.465043995	POOR GOF (79.1%)	1	1	sgMsh2 aCD4/8	autochthonous
chr11	70463513	70463513	C	T	ENSMUST00000039093.9	1	ENSMUSG00000040829	missense	L/F	401	Zmynd15	ENSMUST00000039093.9:c.1201C>T	ENSMUSP00000048816.3:p.Leu401Phe	H-2-Kb	8	7	5	YWTQFSML	YWTQLSML	NetMHC	322.71	3376.42	10.463	61	0.131	393.181	3938.795	10.018	3376.42	322.71	3898.9	704.1	3978.689062	377.3462166	4362.545806	409.0157201	PW1829T2	0.371428571	0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.127	61	1	0	0	11qB3	chr11-69590981-72303763	4	3	1	0.784	4.465043995	POOR GOF (79.1%)	1	0.723291566	sgMsh2 aCD4/8	autochthonous
chr19	39142317	39142317	G	A	ENSMUST00000087234.2	1	ENSMUSG00000067229	missense	R/H	125	Cyp2c66	ENSMUST00000087234.2:c.374G>A	ENSMUSP00000084487.2:p.Arg125His	H-2-Kb	8	10	2	RHFSLMTL	RRFSLMTL	NetMHCpan	267.8	1928.6	7.202	154	0.026	298.023	1304.452	4.377	1792.81	325.19	1928.6	267.8	719.0183929	270.8569601	816.0936526	335.5366776	PW1829T2	1.085714286	1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.038	154	0	0	NA	19qC3	chr19-3378213-61225035	5	3	2	0.784	4.465043995	POOR GOF (79.1%)	1	0.216417949	sgMsh2 aCD4/8	autochthonous
chr19	12862434	12862434	T	G	ENSMUST00000213606.1	5	ENSMUSG00000046272	missense	F/V	220	Olfr1444	ENSMUST00000213606.1:c.658T>G	ENSMUSP00000150212.1:p.Phe220Val	H-2-Kb	9	8	4	ISYVFIYIA	ISYFFIYIA	NetMHC	125.28	230.39	1.839	240	0.054	177.914	201.801	1.134	230.39	125.28	139.7	170	195.0338527	185.8275068	208.5691158	235.640535	PW1829T2	2.171428571	2.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.054	240	0	0	NA	19qA	chr19-3378213-61225035	5	3	2	0.784	4.465043995	POOR GOF (79.1%)	1	0.307541296	sgMsh2 aCD4/8	autochthonous
chr6	113536731	113536731	T	G	ENSMUST00000036340.11	1	ENSMUSG00000034023	missense	F/V	73	Fancd2	ENSMUST00000036340.11:c.217T>G	ENSMUSP00000045667.5:p.Phe73Val	H-2-Kb	9	11	1	VQRKLFQAL	FQRKLFQAL	NetMHC	128.38	899.71	7.008	144	0.09	310.871	1121.92	3.609	899.71	128.38	1218.4	265.2	1054.65399	356.5414284	1189.186581	400.1750427	PW1829T2	0.042857143	0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.095	144	2	0	0	6qE3	chr6-3494310-148817892	5	3	2	0.784	4.465043995	POOR GOF (79.1%)	1	0.541044872	sgMsh2 aCD4/8	autochthonous
chr5	75637385	75637385	AT	A	ENSMUST00000005815.6	1	ENSMUSG00000005672	FS	Y/X	444	Kit	ENSMUST00000005815.6:c.1336del	ENSMUSP00000005815.6:p.Cys446ValfsTer36	H-2-Kb	9	27	0	WTYRSRMYL	NA	NetMHC	128.51	NA	NA	146	0.068	328.714	NA	NA	NA	128.51	NA	137.3	NA	520.1277201	NA	532.4146536	PW1829T2	-0.957142857	-0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.075	146	3	0	0	5qC3.3	chr5-3582301-150478141	4	3	1	0.784	4.465043995	POOR GOF (79.1%)	1	0.427140688	sgMsh2 aCD4/8	autochthonous
chr13	21537130	21537130	T	G	ENSMUST00000218154.1	NA	ENSMUSG00000048996	missense	I/L	292	Olfr1366	ENSMUST00000218154.1:c.874A>C	ENSMUSP00000151506.1:p.Ile292Leu	H-2-Kb	9	10	2	VLFMVVAPV	VIFMVVAPV	NetMHC	318.73	49.31	0.155	83	0.048	496.957	167.447	0.337	49.31	318.73	108.3	338.9	279.3251239	953.037523	226.5948317	655.0131214	PW1829T2	2.5	3.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.053	83	0	0	NA	13qA3.1	chr13-6560583-119495179	4	3	1	0.784	4.465043995	POOR GOF (79.1%)	1	0.301846086	sgMsh2 aCD4/8	autochthonous
chrX	72258525	72258525	G	A	ENSMUST00000064780.3	1	ENSMUSG00000031340	missense	R/W	687	Gabre	ENSMUST00000064780.3:c.2059C>T	ENSMUSP00000066543.3:p.Arg687Trp	H-2-Kb	9	6	6	FNVSRWFGF	FNVSRRFGF	SMM	222.387	528.579	2.377	85	0.729	307.88	850.137	2.761	932.47	320.47	1998.9	1022.3	528.5791156	222.3873092	767.8033453	295.2908568	PW1829T2	0.457142857	0.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.729	85	3	2	0.666666667	XqA7.3	NA	NA	NA	NA	0.784	4.465043995	POOR GOF (79.1%)	NA	NA	sgMsh2 aCD4/8	autochthonous
chr14	123291791	123291791	A	C	ENSMUST00000000201.6	5	ENSMUSG00000000197	missense	L/R	1424	Nalcn	ENSMUST00000000201.6:c.4271T>G	ENSMUSP00000000201.5:p.Leu1424Arg	H-2-Kb	9	11	1	RMYFCSFYV	LMYFCSFYV	SMM	218.328	128.858	0.59	113	0.044	342.404	221.465	0.647	262.94	349.65	748.5	380.9	128.8575886	218.3282833	179.9906727	335.1583163	PW1829T2	1.271428571	1.271428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.06	113	0	0	NA	14qE5	chr14-3072210-123592557	5	3	2	0.784	4.465043995	POOR GOF (79.1%)	1	0.341712551	sgMsh2 aCD4/8	autochthonous
chr7	85564760	85564760	A	C	ENSMUST00000168230.2	5	ENSMUSG00000090806	missense	L/V	395	Vmn2r70	ENSMUST00000168230.2:c.1183T>G	ENSMUSP00000129703.1:p.Leu395Val	H-2-Kb	9	7	5	TCYNVYNAV	TCYNLYNAV	SMMPMBEC	312.069	158.216	0.507	450	0.087	418.785	186.158	0.445	152.4	388.27	214.1	449.3	246.6664026	514.1738673	158.2158541	312.0685478	PW1829T2	0.085714286	0.085714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.082	450	0	0	NA	7qD3	chr7-4743149-142989150	5	3	2	0.784	4.465043995	POOR GOF (79.1%)	1	0.467007153	sgMsh2 aCD4/8	autochthonous
chr19	12862434	12862434	T	G	ENSMUST00000213606.1	5	ENSMUSG00000046272	missense	F/V	220	Olfr1444	ENSMUST00000213606.1:c.658T>G	ENSMUSP00000150212.1:p.Phe220Val	H-2-Kb	9	5	7	VIIISYVFI	VIIISYFFI	SMMPMBEC	263.178	291.911	1.109	240	0.054	378.405	341.163	0.902	386.45	430.89	627.7	555.3	295.876178	325.9192408	291.9106903	263.1782532	PW1829T2	2.628571429	2.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.054	240	0	0	NA	19qA	chr19-3378213-61225035	5	3	2	0.784	4.465043995	POOR GOF (79.1%)	1	0.307541296	sgMsh2 aCD4/8	autochthonous
chrX	72258525	72258525	G	A	ENSMUST00000064780.3	1	ENSMUSG00000031340	missense	R/W	687	Gabre	ENSMUST00000064780.3:c.2059C>T	ENSMUSP00000066543.3:p.Arg687Trp	H-2-Kb	9	8	4	VSRWFGFIV	VSRRFGFIV	NetMHCpan	334.2	246.7	0.738	85	0.729	425.82	456.678	1.072	424.58	488.59	246.7	334.2	488.776143	371.6293451	641.5787927	480.0096849	PW1829T2	1.214285714	1.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.729	85	3	2	0.666666667	XqA7.3	NA	NA	NA	NA	0.784	4.465043995	POOR GOF (79.1%)	NA	NA	sgMsh2 aCD4/8	autochthonous
chr11	70463513	70463513	C	T	ENSMUST00000039093.9	1	ENSMUSG00000040829	missense	L/F	401	Zmynd15	ENSMUST00000039093.9:c.1201C>T	ENSMUSP00000048816.3:p.Leu401Phe	H-2-Kb	9	3	9	LTRGYWTQF	LTRGYWTQL	SMMPMBEC	259.567	150.055	0.578	61	0.131	487.95	153.35	0.314	152.9	585.86	153.8	690.8	231.2650474	390.0407654	150.0548372	259.5673122	PW1829T2	-1.214285714	-0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.127	61	1	0	0	11qB3	chr11-69590981-72303763	4	3	1	0.784	4.465043995	POOR GOF (79.1%)	1	0.723291566	sgMsh2 aCD4/8	autochthonous
chr14	123291791	123291791	A	C	ENSMUST00000000201.6	5	ENSMUSG00000000197	missense	L/R	1424	Nalcn	ENSMUST00000000201.6:c.4271T>G	ENSMUSP00000000201.5:p.Leu1424Arg	H-2-Kb	9	9	3	GARMYFCSF	GALMYFCSF	SMMPMBEC	381.285	256.596	0.673	113	0.044	392.32	283.166	0.722	484.58	734.79	280.5	394.6	285.8314418	390.0407654	256.5960697	381.2852457	PW1829T2	0.485714286	0.485714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.06	113	0	0	NA	14qE5	chr14-3072210-123592557	5	3	2	0.784	4.465043995	POOR GOF (79.1%)	1	0.341712551	sgMsh2 aCD4/8	autochthonous
chr19	12862434	12862434	T	G	ENSMUST00000213606.1	5	ENSMUSG00000046272	missense	F/V	220	Olfr1444	ENSMUST00000213606.1:c.658T>G	ENSMUSP00000150212.1:p.Phe220Val	H-2-Kb	10	8	4	ISYVFIYIAI	ISYFFIYIAI	NetMHC	14	30.7	2.193	240	0.054	406.439	170.765	0.42	30.7	14	32.6	33.3	445.9950104	1165.01093	308.92994	779.5787635	PW1829T2	3	3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.054	240	0	0	NA	19qA	chr19-3378213-61225035	5	3	2	0.784	4.465043995	POOR GOF (79.1%)	1	0.307541296	sgMsh2 aCD4/8	autochthonous
chr1	54990381	54990383	CAAG	C	ENSMUST00000027127.13	1	ENSMUSG00000025982	inframe_del	FL/L	1153-1154	Sf3b1	ENSMUST00000027127.13:c.3459_3461del	ENSMUSP00000027127.7:p.Phe1153del	H-2-Db	9	7	5	KSLSLFEYI	SLSFLFEYI	NetMHC	98.18	6166.9	62.812	278	0.022	151.766	5469.008	36.036	6166.9	98.18	6213.3	145.2	4771.116267	172.0362629	4193.435814	158.3324748	PW1829T4	1.328571429	1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.028	278	590	9	0.015254237	1qC1.2	chr1-6770919-193194439	5	3	2	0.751	4.082658582	POOR GOF (75.9%)	1	0.152216299	sgMsh2 aCD4/8	autochthonous
chr15	73565022	73565022	A	G	ENSMUST00000043414.11	1	ENSMUSG00000036661	missense	M/V	1033	Dennd3	ENSMUST00000043414.11:c.3097A>G	ENSMUSP00000046774.5:p.Met1033Val	H-2-Db	9	5	7	SSKVNCVVM	SSKVNCMVM	NetMHC	125.4	265.47	2.117	145	0.055	135.049	224.471	1.662	265.47	125.4	761.6	371.8	174.8316273	140.8056235	183.4720865	129.2915077	PW1829T4	1.371428571	1.371428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.063	145	78	0	0	15qD3	chr15-3327923-102485857	5	3	2	0.751	4.082658582	POOR GOF (75.9%)	1	0.342486672	sgMsh2 aCD4/8	autochthonous
chr14	28518534	28518534	G	A	ENSMUST00000063465.11	1	ENSMUSG00000021994	missense	A/T	214	Wnt5a	ENSMUST00000063465.11:c.640G>A	ENSMUSP00000064878.4:p.Ala214Thr	H-2-Kb	8	10	2	STRILMNL	SARILMNL	NetMHC	58.74	59.5	1.013	88	0.182	122.912	175.582	1.429	59.5	58.74	199.2	200.5	151.9637493	98.3422182	233.2061504	147.4823333	PW1829T4	0.757142857	0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.195	88	10	0	0	14qA3	chr14-3072210-123592557	4	3	1	0.751	4.082658582	POOR GOF (75.9%)	1	1	sgMsh2 aCD4/8	autochthonous
chr5	122433486	122433486	C	T	ENSMUST00000122010.7	5	ENSMUSG00000029466	missense	A/V	208	Anapc7	ENSMUST00000122010.7:c.623C>T	ENSMUSP00000113928.1:p.Ala208Val	H-2-Kb	8	10	2	KVYAFVHT	KAYAFVHT	NetMHCpan	110	78.6	0.715	165	0.188	123.923	113.383	0.915	92.26	123.47	78.6	110	196.6708524	199.8664966	134.5054866	124.3769779	PW1829T4	1.114285714	1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.191	165	128	24	0.1875	5qF	chr5-3582301-150466497	4	3	1	0.751	4.082658582	POOR GOF (75.9%)	1	1	sgMsh2 aCD4/8	autochthonous
chr14	50148173	50148173	C	T	ENSMUST00000213163.1	5	ENSMUSG00000049011	missense	A/T	234	Olfr729	ENSMUST00000213163.1:c.700G>A	ENSMUSP00000148960.1:p.Ala234Thr	H-2-Kb	8	10	2	MTKAFSTL	MAKAFSTL	NetMHCpan	67.9	82.3	1.212	210	0.024	93.399	138.895	1.487	136.62	140.17	82.3	67.9	141.1692151	91.35661511	150.9176382	95.44210297	PW1829T4	0.328571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.032	210	0	0	NA	14qC1	chr14-3072210-123592557	4	3	1	0.751	4.082658582	POOR GOF (75.9%)	1	0.173961484	sgMsh2 aCD4/8	autochthonous
chr9	60587789	60587789	G	A	ENSMUST00000065603.11	1	ENSMUSG00000047766	missense	P/S	720	Lrrc49	ENSMUST00000065603.11:c.2158C>T	ENSMUSP00000070606.5:p.Pro720Ser	H-2-Kb	8	10	2	WSQMFIEL	WPQMFIEL	NetMHC	148.98	4326.37	29.04	65	0.062	164.028	2307.9	14.07	4326.37	148.98	3447	266.3	1168.799454	176.0921516	1093.301641	151.9637493	PW1829T4	0.742857143	0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.081	65	78	0	0	9qB	chr9-3342997-124127224	3	2	1	0.751	4.082658582	POOR GOF (75.9%)	1	0.440340007	sgMsh2 aCD4/8	autochthonous
chr19	16641572	16641572	TA	T	ENSMUST00000068156.7	2	ENSMUSG00000046230	FS	Y/X	2877	Vps13a	ENSMUST00000068156.7:c.8629del	ENSMUSP00000068716.6:p.Tyr2877MetfsTer20	H-2-Kb	8	6	6	VEAFFMNL	VEAFFYEP	SMM	63.495	8067.519	127.057	152	0.066	112.485	14589.95	129.706	20067.12	201.53	16997.3	128.2	8067.519058	63.49506908	12182.60042	96.76983488	PW1829T4	0.871428571	0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.067	152	59	5	0.084745763	19qA	chr19-3267259-61225035	5	3	2	0.751	4.082658582	POOR GOF (75.9%)	1	0.364231858	sgMsh2 aCD4/8	autochthonous
chr9	95773579	95773579	TA	T	ENSMUST00000093800.8	1	ENSMUSG00000049493	FS	F/X	373	Pls1	ENSMUST00000093800.8:c.1119del	ENSMUSP00000091317.2:p.Phe373LeufsTer34	H-2-Kb	8	18	0	TSLTIMTL	NA	NetMHCpan	209.3	NA	NA	126	0.056	305.769	NA	NA	NA	247.84	NA	209.3	NA	414.7056956	NA	363.6972355	PW1829T4	1.685714286	1.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.069	126	126	1	0.007936508	9qE3.3	chr9-3342997-124127224	3	2	1	0.751	4.082658582	POOR GOF (75.9%)	1	0.37510445	sgMsh2 aCD4/8	autochthonous
chr9	95773579	95773579	TA	T	ENSMUST00000093800.8	1	ENSMUSG00000049493	FS	F/X	373	Pls1	ENSMUST00000093800.8:c.1119del	ENSMUSP00000091317.2:p.Phe373LeufsTer34	H-2-Kb	8	13	0	HTHAYTSL	NA	SMMPMBEC	176.092	NA	NA	126	0.056	233.125	NA	NA	NA	250.17	NA	239.4	NA	226.8506354	NA	176.0921516	PW1829T4	-0.157142857	-0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.069	126	126	1	0.007936508	9qE3.3	chr9-3342997-124127224	3	2	1	0.751	4.082658582	POOR GOF (75.9%)	1	0.37510445	sgMsh2 aCD4/8	autochthonous
chr2	153399446	153399446	AG	A	ENSMUST00000109790.1	5	ENSMUSG00000042548	FS	G/X	640	Asxl1	ENSMUST00000109790.1:c.1925del	ENSMUSP00000105413.1:p.Gly642ValfsTer58	H-2-Kb	8	33	0	VVMVVRPV	NA	NetMHC	253.25	NA	NA	73	0.068	329.794	NA	NA	NA	253.25	NA	280.5	NA	467.4552051	NA	379.0879676	PW1829T4	1.8	1.8	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0685	73	38	1	0.026315789	2qH1	chr2-4925576-181597603	5	3	2	0.751	4.082658582	POOR GOF (75.9%)	1	0.372386302	sgMsh2 aCD4/8	autochthonous
chr9	95773579	95773579	TA	T	ENSMUST00000093800.8	1	ENSMUSG00000049493	FS	F/X	373	Pls1	ENSMUST00000093800.8:c.1119del	ENSMUSP00000091317.2:p.Phe373LeufsTer34	H-2-Kb	8	4	8	LAFVANLL	LAFVANLF	NetMHCpan	144.1	785.2	5.449	126	0.056	339.233	3614.741	10.656	2080.28	271.33	785.2	144.1	6618.201718	407.1364636	5149.202839	409.9585987	PW1829T4	2.1	2.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.069	126	126	1	0.007936508	9qE3.3	chr9-3342997-124127224	3	2	1	0.751	4.082658582	POOR GOF (75.9%)	1	0.37510445	sgMsh2 aCD4/8	autochthonous
chr2	153399446	153399446	AG	A	ENSMUST00000109790.1	5	ENSMUSG00000042548	FS	G/X	640	Asxl1	ENSMUST00000109790.1:c.1925del	ENSMUSP00000105413.1:p.Gly642ValfsTer58	H-2-Kb	8	36	0	VVRPVATL	NA	SMM	210.737	NA	NA	73	0.068	296.367	NA	NA	NA	295.06	NA	306	NA	210.7366151	NA	297.6733808	PW1829T4	1.028571429	1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0685	73	38	1	0.026315789	2qH1	chr2-4925576-181597603	5	3	2	0.751	4.082658582	POOR GOF (75.9%)	1	0.372386302	sgMsh2 aCD4/8	autochthonous
chr2	181597603	181597603	G	A	ENSMUST00000060173.8	1	ENSMUSG00000038605	missense	A/V	33	Samd10	ENSMUST00000060173.8:c.98C>T	ENSMUSP00000060499.8:p.Ala33Val	H-2-Kb	8	11	1	VHFSFCQT	AHFSFCQT	SMMPMBEC	131.141	449.511	3.428	87	0.23	250.747	823.607	3.285	1578.69	325.15	931.5	311.5	715.7148034	189.9940498	449.5106648	131.1414557	PW1829T4	-0.014285714	0.685714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.235	87	24	3	0.125	2qH4	chr2-4925576-181597603	5	3	2	0.751	4.082658582	POOR GOF (75.9%)	1	1	sgMsh2 aCD4/8	autochthonous
chr19	3267259	3267259	C	T	ENSMUST00000025751.10	1	ENSMUSG00000024831	missense	A/T	538	Ighmbp2	ENSMUST00000025751.10:c.1612G>A	ENSMUSP00000025751.3:p.Ala538Thr	H-2-Kb	8	8	4	AVITPYNL	AVIAPYNL	NetMHCpan	230.6	284.7	1.235	97	0.206	444.093	505.261	1.138	562.22	443.82	284.7	230.6	453.6699358	444.3651588	556.8522772	507.8553127	PW1829T4	0.771428571	0.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.195	97	25	3	0.12	19qA	chr19-3267259-61225035	5	3	2	0.751	4.082658582	POOR GOF (75.9%)	1	1	sgMsh2 aCD4/8	autochthonous
chr2	181597603	181597603	G	A	ENSMUST00000060173.8	1	ENSMUSG00000038605	missense	A/V	33	Samd10	ENSMUST00000060173.8:c.98C>T	ENSMUSP00000060499.8:p.Ala33Val	H-2-Kb	9	11	1	VHFSFCQTL	AHFSFCQTL	NetMHC	11.25	27.39	2.435	87	0.23	34.072	94.065	2.761	27.39	11.25	41.2	18.7	146.9298381	49.4435904	188.4733717	68.27315929	PW1829T4	0.985714286	0.985714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.235	87	24	3	0.125	2qH4	chr2-4925576-181597603	5	3	2	0.751	4.082658582	POOR GOF (75.9%)	1	1	sgMsh2 aCD4/8	autochthonous
chr15	9704496	9704496	TA	T	ENSMUST00000041840.13	1	ENSMUSG00000072663	FS	F/X	410	Spef2	ENSMUST00000041840.13:c.1230del	ENSMUSP00000035762.7:p.Phe410LeufsTer27	H-2-Kb	9	12	0	VEFPYMNRL	NA	NetMHC	98.87	NA	NA	198	0.045	103.094	NA	NA	NA	98.87	NA	118.1	NA	104.7393803	NA	101.4495208	PW1829T4	-0.342857143	-0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.048	198	0	0	NA	15qA1	chr15-3327923-102485857	5	3	2	0.751	4.082658582	POOR GOF (75.9%)	1	0.260942226	sgMsh2 aCD4/8	autochthonous
chr5	122433486	122433486	C	T	ENSMUST00000122010.7	5	ENSMUSG00000029466	missense	A/V	208	Anapc7	ENSMUST00000122010.7:c.623C>T	ENSMUSP00000113928.1:p.Ala208Val	H-2-Kb	9	7	5	VWIKVYAFV	VWIKAYAFV	SMM	174.225	123.342	0.708	165	0.188	212.518	158.103	0.744	102.75	208.64	198.6	288.7	123.3417199	174.2248102	192.8634805	216.3963843	PW1829T4	1.757142857	1.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.191	165	128	24	0.1875	5qF	chr5-3582301-150466497	4	3	1	0.751	4.082658582	POOR GOF (75.9%)	1	1	sgMsh2 aCD4/8	autochthonous
chr1	54990381	54990383	CAAG	C	ENSMUST00000027127.13	1	ENSMUSG00000025982	inframe_del	FL/L	1153-1154	Sf3b1	ENSMUST00000027127.13:c.3459_3461del	ENSMUSP00000027127.7:p.Phe1153del	H-2-Kb	9	10	2	SLFEYIGEM	FLFEYIGEM	NetMHCpan	73.1	279.9	3.829	278	0.022	302.084	618.124	2.046	659.15	212.2	279.9	73.1	671.5989369	435.622196	577.0985724	391.9674468	PW1829T4	0.071428571	0.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.028	278	590	9	0.015254237	1qC1.2	chr1-6770919-193194439	5	3	2	0.751	4.082658582	POOR GOF (75.9%)	1	0.152216299	sgMsh2 aCD4/8	autochthonous
chr14	50148173	50148173	C	T	ENSMUST00000213163.1	5	ENSMUSG00000049011	missense	A/T	234	Olfr729	ENSMUST00000213163.1:c.700G>A	ENSMUSP00000148960.1:p.Ala234Thr	H-2-Kb	9	9	3	AMTKAFSTL	AMAKAFSTL	NetMHCpan	228.5	136.7	0.598	210	0.024	349.447	244.879	0.701	222.39	309.75	136.7	228.5	267.3683525	389.1436965	396.5062159	526.3201534	PW1829T4	0.328571429	0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.032	210	0	0	NA	14qC1	chr14-3072210-123592557	4	3	1	0.751	4.082658582	POOR GOF (75.9%)	1	0.173961484	sgMsh2 aCD4/8	autochthonous
chr19	16641572	16641572	TA	T	ENSMUST00000068156.7	2	ENSMUSG00000046230	FS	Y/X	2877	Vps13a	ENSMUST00000068156.7:c.8629del	ENSMUSP00000068716.6:p.Tyr2877MetfsTer20	H-2-Kb	9	5	7	GVEAFFMNL	GVEAFFYEP	NetMHCpan	209.8	25558.5	121.823	152	0.066	428.684	14626.295	34.119	23829.46	327.4	25558.5	209.8	3598.404656	632.5720517	5423.12981	529.9684305	PW1829T4	0.871428571	1.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.067	152	59	5	0.084745763	19qA	chr19-3267259-61225035	5	3	2	0.751	4.082658582	POOR GOF (75.9%)	1	0.364231858	sgMsh2 aCD4/8	autochthonous
chr17	19694528	19694528	T	G	ENSMUST00000171741.2	5	ENSMUSG00000095961	missense	F/C	785	Vmn2r102	ENSMUST00000171741.2:c.2354T>G	ENSMUSP00000126559.1:p.Phe785Cys	H-2-Kb	9	4	8	LSFSMLVCF	LSFSMLVFF	SMM	200.96	185.4	0.923	415	0.186	455.6	330.622	0.726	435.69	699.73	606.2	1262.7	185.4001153	200.9601749	225.553723	211.4706012	PW1829T4	2.457142857	2.457142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.178	415	0	0	NA	17qA3.2	chr17-3077700-90208269	4	3	1	0.751	4.082658582	POOR GOF (75.9%)	1	0.967660756	sgMsh2 aCD4/8	autochthonous
chr10	117051287	117051287	GA	G	ENSMUST00000219690.1	5	ENSMUSG00000034024	FS	F/X	97	Cct2	ENSMUST00000219690.1:c.288del	ENSMUSP00000152005.1:p.Phe97SerfsTer14	H-2-Kb	9	5	7	VGCFFFSPY	VGCFFFFPL	SMMPMBEC	124.81	46.371	0.372	86	0.186	330.822	38.981	0.118	31.59	721.81	19.2	509.9	63.11171763	151.7434661	46.3713778	124.8101773	PW1829T4	1.028571429	1.985714286	FALSE	FALSE	FALSE	1	FALSE	0	Strelka2;Vardict	2	0.186	86	0	0	NA	10qD2	chr10-3119979-130453386	4	2	2	0.751	4.082658582	POOR GOF (75.9%)	1	1	sgMsh2 aCD4/8	autochthonous
chr3	19610496	19610496	TA	T	ENSMUST00000119133.1	1	ENSMUSG00000082766	FS	L/X	66	1700064H15Rik	ENSMUST00000119133.1:c.197del	ENSMUSP00000113751.1:p.Leu66TyrfsTer35	H-2-Kb	8	6	6	SNFFFYHV	SNFFFLPC	NetMHCpan	5.2	33.3	6.404	181	0.326	7.009	50.59	7.217	125.59	5.61	33.3	5.2	41.37518989	8.408915726	59.80534499	11.03417837	PW1829T5	0.657142857	0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.326	181	0	0	NA	3qA2	chr3-15331914-159913826	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	2	1	sgMsh2 aCD4/8	autochthonous
chr9	64897246	64897246	C	T	ENSMUST00000038890.5	5	ENSMUSG00000053641	missense	T/M	1289	Dennd4a	ENSMUST00000038890.5:c.3866C>T	ENSMUSP00000037915.5:p.Thr1289Met	H-2-Kb	8	4	8	SSPAFSPM	SSPAFSPT	NetMHC	6.27	106.46	16.979	138	0.043	26.868	224.787	8.366	106.46	6.27	492.6	19.4	243.6351806	34.33523309	205.9396641	42.92793522	PW1829T5	0.242857143	0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.048	138	26	1	0.038461538	9qC	chr9-3342997-124127055	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	1	0.230928757	sgMsh2 aCD4/8	autochthonous
chr6	124580737	124580737	T	C	ENSMUST00000184647.1	1	ENSMUSG00000098470	missense	V/A	611	C1rb	ENSMUST00000184647.1:c.1832T>C	ENSMUSP00000139376.1:p.Val611Ala	H-2-Kb	8	6	6	FHLRFARL	FHLRFVRL	NetMHC	7.72	46.32	6	325	0.031	13.329	42.645	3.2	46.32	7.72	82	42.7	37.99618556	13.14437679	38.97086091	13.51263357	PW1829T5	-1.27E-16	-1.27E-16	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.035	325	0	0	NA	6qF2	chr6-113104747-145247059	6	4	2	0.837	4.026820194	POOR GOF (79.9%)	1	0.168385552	sgMsh2 aCD4/8	autochthonous
chr7	86394962	86394962	CA	C	ENSMUST00000216409.1	5	ENSMUSG00000039608	FS	C/X	179	Olfr303	ENSMUST00000216409.1:c.535del	ENSMUSP00000149419.1:p.Cys179ValfsTer28	H-2-Kb	8	6	6	INHFFVTL	INHFFCDS	NetMHCpan	6.1	2886.6	473.213	124	0.355	23.257	1948.787	83.795	5089.44	23.3	2886.6	6.1	693.0107956	23.21346655	1010.974031	23.91883374	PW1829T5	0.885714286	0.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.365	124	0	0	NA	7qD3	chr7-3897412-142893198	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	2	1	sgMsh2 aCD4/8	autochthonous
chr6	145427282	145427282	G	A	ENSMUST00000111708.8	1	ENSMUSG00000054966	missense	S/F	175	Lmntd1	ENSMUST00000111708.8:c.524C>T	ENSMUSP00000107337.2:p.Ser175Phe	H-2-Kb	8	7	5	GQFTFSSL	GQFTSSSL	NetMHC	41.98	4682.81	111.549	181	0.144	47.327	2193.155	46.34	4682.81	41.98	3136.8	49.6	1249.510759	65.72642338	976.6523514	45.05468939	PW1829T5	0.514285714	0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.157	181	0	0	NA	6qG3	chr6-145397053-148817892	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	1	0.755329475	sgMsh2 aCD4/8	autochthonous
chr14	57846984	57846984	C	T	ENSMUST00000089473.4	1	ENSMUSG00000021969	missense	V/I	225	Zdhhc20	ENSMUST00000089473.4:c.673G>A	ENSMUSP00000086900.3:p.Val225Ile	H-2-Kb	8	6	6	SAMFFISV	SAMFFVSV	NetMHCpan	21	16.8	0.8	152	0.112	112.343	97.497	0.868	63.55	72.02	16.8	21	147.1431334	160.597951	131.4437679	152.6651821	PW1829T5	2.457142857	2.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.12	152	152	26	0.171052632	14qC3	chr14-3072210-123592557	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	1	0.577321892	sgMsh2 aCD4/8	autochthonous
chr3	19610496	19610496	TA	T	ENSMUST00000119133.1	1	ENSMUSG00000082766	FS	L/X	66	1700064H15Rik	ENSMUST00000119133.1:c.197del	ENSMUSP00000113751.1:p.Leu66TyrfsTer35	H-2-Kb	8	8	4	FFFYHVPL	NA	SMM	29.905	NA	NA	181	0.326	57.835	NA	NA	NA	93.67	NA	79.8	NA	29.90473787	NA	35.87071224	PW1829T5	1.071428571	1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.326	181	0	0	NA	3qA2	chr3-15331914-159913826	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	2	1	sgMsh2 aCD4/8	autochthonous
chr19	40038305	40038305	T	C	ENSMUST00000048959.4	2	ENSMUSG00000067225	missense	I/V	469	Cyp2c54	ENSMUST00000048959.4:c.1405A>G	ENSMUSP00000048284.3:p.Ile469Val	H-2-Kb	8	11	1	VTPMLIGL	ITPMLIGL	NetMHC	94.21	106.48	1.13	217	0.023	199.775	199.591	0.999	106.48	94.21	164.9	163.1	252.1970487	236.4503711	234.2825811	240.2923806	PW1829T5	1.614285714	1.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.029	217	0	0	NA	19qC3	chr19-3628599-60987573	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	1	0.139519457	sgMsh2 aCD4/8	autochthonous
chr13	95701484	95701484	G	A	ENSMUST00000022182.4	1	ENSMUSG00000021675	missense	G/R	346	F2rl2	ENSMUST00000022182.4:c.1036G>A	ENSMUSP00000022182.4:p.Gly346Arg	H-2-Kb	8	6	6	IALCLRSL	IALCLGSL	NetMHCpan	143.4	137.7	0.96	161	0.236	164.824	179.477	1.089	161.83	145.68	137.7	143.4	197.1242255	183.9670312	209.2859144	209.2859144	PW1829T5	1.485714286	1.585714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.25	161	11	3	0.272727273	13qD1	chr13-4065516-119457015	4	3	1	0.837	4.026820194	POOR GOF (79.9%)	1	1	sgMsh2 aCD4/8	autochthonous
chr6	116701996	116701996	CT	C	ENSMUST00000056623.12	1	ENSMUSG00000048108	FS	S/X	40	Tmem72	ENSMUST00000056623.12:c.118del	ENSMUSP00000057942.6:p.Ser40AlafsTer74	H-2-Kb	8	76	0	STLSWSGM	NA	NetMHC	165.56	NA	NA	92	0.087	251.323	NA	NA	NA	165.56	NA	224.2	NA	308.8445912	NA	278.4453695	PW1829T5	0.3	0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.105	92	0	0	NA	6qE3	chr6-113104747-145247059	6	4	2	0.837	4.026820194	POOR GOF (79.9%)	1	0.505156655	sgMsh2 aCD4/8	autochthonous
chr7	51861459	51861459	G	A	ENSMUST00000169357.1	NA	ENSMUSG00000092118	missense	R/W	266	Fancf	ENSMUST00000169357.1:c.796C>T	ENSMUSP00000125812.1:p.Arg266Trp	H-2-Kb	8	9	3	ATWLHYDL	ATRLHYDL	NetMHCpan	100.7	1259.7	12.509	76	0.132	180.287	817.375	4.534	1071.45	198.72	1259.7	100.7	439.2785529	186.0972691	563.3003227	174.4777291	PW1829T5	-0.285714286	-0.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.141	76	11	4	0.363636364	7qB4	chr7-3897412-142893198	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	1	0.678353223	sgMsh2 aCD4/8	autochthonous
chr6	57646152	57646152	C	T	ENSMUST00000031817.9	1	ENSMUSG00000029798	missense	A/V	580	Herc6	ENSMUST00000031817.9:c.1739C>T	ENSMUSP00000031817.8:p.Ala580Val	H-2-Kb	8	10	2	SVFIINEL	SAFIINEL	NetMHCpan	68.5	95.4	1.393	110	0.118	365.676	368.514	1.008	213.74	247.47	95.4	68.5	531.7897962	540.4306853	523.2870654	483.8825938	PW1829T5	1.828571429	1.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.12	110	10	2	0.2	6qB3	chr6-3494310-113068119	4	3	1	0.837	4.026820194	POOR GOF (79.9%)	1	0.577321892	sgMsh2 aCD4/8	autochthonous
chr11	49280973	49280973	T	C	ENSMUST00000213323.1	5	ENSMUSG00000059864	missense	L/P	275	Olfr1393	ENSMUST00000213323.1:c.824T>C	ENSMUSP00000149358.1:p.Leu275Pro	H-2-Kb	8	9	3	VAPFYTII	VALFYTII	NetMHCpan	57.5	36.2	0.63	306	0.042	434.518	227.215	0.523	193.97	258.46	36.2	57.5	260.4593785	610.5763804	313.1410475	804.8964279	PW1829T5	1.428571429	1.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.043	306	0	0	NA	11qB1.2	chr11-3133205-69579350	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	1	0.206873678	sgMsh2 aCD4/8	autochthonous
chr14	57846984	57846984	C	T	ENSMUST00000089473.4	1	ENSMUSG00000021969	missense	V/I	225	Zdhhc20	ENSMUST00000089473.4:c.673G>A	ENSMUSP00000086900.3:p.Val225Ile	H-2-Kb	8	7	5	AMFFISVL	AMFFVSVL	NetMHCpan	59.2	65.1	1.1	152	0.112	407.553	250.173	0.614	324.82	368.69	65.1	59.2	233.2061504	534.2444264	267.1406633	446.4162552	PW1829T5	2.742857143	2.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.12	152	152	26	0.171052632	14qC3	chr14-3072210-123592557	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	1	0.577321892	sgMsh2 aCD4/8	autochthonous
chr3	19610496	19610496	TA	T	ENSMUST00000119133.1	1	ENSMUSG00000082766	FS	L/X	66	1700064H15Rik	ENSMUST00000119133.1:c.197del	ENSMUSP00000113751.1:p.Leu66TyrfsTer35	H-2-Kb	8	37	0	SILQIRGL	NA	SMMPMBEC	366.218	NA	NA	181	0.326	381.856	NA	NA	NA	374.9	NA	398.6	NA	388.8123042	NA	366.2182643	PW1829T5	1.171428571	1.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.326	181	0	0	NA	3qA2	chr3-15331914-159913826	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	2	1	sgMsh2 aCD4/8	autochthonous
chr7	92619657	92619658	ACT	A	ENSMUST00000118157.7	1	ENSMUSG00000041343	FS	E/X	159	Ankrd42	ENSMUST00000118157.7:c.476_477del	ENSMUSP00000113767.1:p.Glu159ValfsTer55	H-2-Kb	8	19	0	FSWAAWLL	NA	NetMHCpan	406.4	NA	NA	140	0.3	452.214	NA	NA	NA	2767.24	NA	406.4	NA	442.3234863	NA	462.1042896	PW1829T5	1.228571429	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.316	140	7	1	0.142857143	7qE1	chr7-3897412-142893198	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	2	1	sgMsh2 aCD4/8	autochthonous
chr14	57846984	57846984	C	T	ENSMUST00000089473.4	1	ENSMUSG00000021969	missense	V/I	225	Zdhhc20	ENSMUST00000089473.4:c.673G>A	ENSMUSP00000086900.3:p.Val225Ile	H-2-Kb	9	5	7	VSAMFFISV	VSAMFFVSV	NetMHCpan	19	13.9	0.732	152	0.112	42.899	43.127	1.005	18.16	19.1	13.9	19	68.09418088	66.69756823	69.06372522	76.25178243	PW1829T5	2.457142857	2.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.12	152	152	26	0.171052632	14qC3	chr14-3072210-123592557	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	1	0.577321892	sgMsh2 aCD4/8	autochthonous
chr3	19610496	19610496	TA	T	ENSMUST00000119133.1	1	ENSMUSG00000082766	FS	L/X	66	1700064H15Rik	ENSMUST00000119133.1:c.197del	ENSMUSP00000113751.1:p.Leu66TyrfsTer35	H-2-Kb	9	5	7	SSNFFFYHV	SSNFFFLPC	NetMHC	22.43	478.67	21.341	181	0.326	72.353	364.562	5.039	478.67	22.43	239.6	26.1	411.2538721	118.6069123	317.8703353	150.0548372	PW1829T5	0.657142857	0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.326	181	0	0	NA	3qA2	chr3-15331914-159913826	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	2	1	sgMsh2 aCD4/8	autochthonous
chr7	10490744	10490744	G	T	ENSMUST00000032551.7	1	ENSMUSG00000030393	missense	A/E	142	Zik1	ENSMUST00000032551.7:c.425C>A	ENSMUSP00000032551.7:p.Ala142Glu	H-2-Kb	9	3	9	SSYLFYLSE	SSYLFYLSA	SMM	21.733	42.767	1.968	90	0.056	28.648	26.734	0.933	8.02	30.55	10.7	127.1	42.76711949	21.7325156	49.23228579	26.74545558	PW1829T5	0.5	0.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.06	90	4	0	0	7qA1	chr7-3897412-142893198	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	1	0.288660946	sgMsh2 aCD4/8	autochthonous
chr6	145427282	145427282	G	A	ENSMUST00000111708.8	1	ENSMUSG00000054966	missense	S/F	175	Lmntd1	ENSMUST00000111708.8:c.524C>T	ENSMUSP00000107337.2:p.Ser175Phe	H-2-Kb	9	6	6	VGQFTFSSL	VGQFTSSSL	NetMHCpan	46.6	1004.5	21.556	181	0.144	230.741	1089.848	4.723	874.26	49.28	1004.5	46.6	1175.195176	412.2019102	1746.827418	493.4577793	PW1829T5	0.514285714	0.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.157	181	0	0	NA	6qG3	chr6-145397053-148817892	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	1	0.755329475	sgMsh2 aCD4/8	autochthonous
chr14	57846984	57846984	C	T	ENSMUST00000089473.4	1	ENSMUSG00000021969	missense	V/I	225	Zdhhc20	ENSMUST00000089473.4:c.673G>A	ENSMUSP00000086900.3:p.Val225Ile	H-2-Kb	9	6	6	SAMFFISVL	SAMFFVSVL	NetMHCpan	19.2	19.4	1.01	152	0.112	94.16	107.002	1.136	57.29	60.35	19.4	19.2	156.7147954	127.9705392	158.2158541	134.9739632	PW1829T5	2.742857143	2.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.12	152	152	26	0.171052632	14qC3	chr14-3072210-123592557	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	1	0.577321892	sgMsh2 aCD4/8	autochthonous
chr11	89503955	89503955	G	A	ENSMUST00000128717.8	5	ENSMUSG00000047773	missense	T/M	288	Ankfn1	ENSMUST00000128717.8:c.863C>T	ENSMUSP00000121290.2:p.Thr288Met	H-2-Kb	9	10	2	LMVSFQEPL	LTVSFQEPL	NetMHC	77.01	96.87	1.258	146	0.062	118.332	271.903	2.298	96.87	77.01	169.6	95.7	374.2053566	140.9645794	437.7740356	192.8634805	PW1829T5	0.2	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.059	146	0	0	NA	11qC	chr11-69600961-121956879	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	1	0.28384993	sgMsh2 aCD4/8	autochthonous
chr7	19277966	19277966	TG	T	ENSMUST00000032560.5	1	ENSMUSG00000030402	FS	P/X	396	Ppm1n	ENSMUST00000032560.5:c.1187del	ENSMUSP00000032560.4:p.Pro396GlnfsTer99	H-2-Kb	9	98	0	LNPLLFLPL	NA	NetMHCpan	52.6	NA	NA	78	0.09	133.062	NA	NA	NA	91.9	NA	52.6	NA	174.2248102	NA	194.2003463	PW1829T5	2.114285714	2.114285714	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;Vardict	3	0.092	78	0	0	NA	7qA3	chr7-3897412-142893198	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	1	0.44261345	sgMsh2 aCD4/8	autochthonous
chr9	38464460	38464460	T	A	ENSMUST00000216724.2	5	ENSMUSG00000094380	missense	L/M	140	Olfr904	ENSMUST00000216724.2:c.418T>A	ENSMUSP00000150057.1:p.Leu140Met	H-2-Kb	9	7	5	MSPKMCLNL	MSPKLCLNL	NetMHC	111.01	180.84	1.629	258	0.062	401.659	595.93	1.484	180.84	111.01	189.3	157.5	1002.559138	645.8177839	1019.177905	718.2076058	PW1829T5	0.428571429	0.542857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.064	258	0	0	NA	9qA5.1	chr9-3342997-124127055	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	1	0.307905009	sgMsh2 aCD4/8	autochthonous
chr7	19277966	19277966	TG	T	ENSMUST00000032560.5	1	ENSMUSG00000030402	FS	P/X	396	Ppm1n	ENSMUST00000032560.5:c.1187del	ENSMUSP00000032560.4:p.Pro396GlnfsTer99	H-2-Kb	9	40	0	ILRGPYAHL	NA	NetMHC	113.53	NA	NA	78	0.09	258.011	NA	NA	NA	113.53	NA	133.1	NA	382.9217191	NA	402.9489236	PW1829T5	-0.771428571	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.092	78	0	0	NA	7qA3	chr7-3897412-142893198	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	1	0.44261345	sgMsh2 aCD4/8	autochthonous
chr7	86394962	86394962	CA	C	ENSMUST00000216409.1	5	ENSMUSG00000039608	FS	C/X	179	Olfr303	ENSMUST00000216409.1:c.535del	ENSMUSP00000149419.1:p.Cys179ValfsTer28	H-2-Kb	9	5	7	KINHFFVTL	KINHFFCDS	NetMHCpan	53	9313.7	175.73	124	0.355	208.781	4813.548	23.055	7107.97	173.72	9313.7	53	1807.631913	243.8428356	2519.126636	247.8848587	PW1829T5	0.885714286	0.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.365	124	0	0	NA	7qD3	chr7-3897412-142893198	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	2	1	sgMsh2 aCD4/8	autochthonous
chr7	92619657	92619658	ACT	A	ENSMUST00000118157.7	1	ENSMUSG00000041343	FS	E/X	159	Ankrd42	ENSMUST00000118157.7:c.476_477del	ENSMUSP00000113767.1:p.Glu159ValfsTer55	H-2-Kb	9	17	0	CIFSWAAWL	NA	SMM	159.261	NA	NA	140	0.3	257.385	NA	NA	NA	224.77	NA	290	NA	159.261206	NA	323.0353127	PW1829T5	1.085714286	1.671428571	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.316	140	7	1	0.142857143	7qE1	chr7-3897412-142893198	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	2	1	sgMsh2 aCD4/8	autochthonous
chr3	19610496	19610496	TA	T	ENSMUST00000119133.1	1	ENSMUSG00000082766	FS	L/X	66	1700064H15Rik	ENSMUST00000119133.1:c.197del	ENSMUSP00000113751.1:p.Leu66TyrfsTer35	H-2-Kb	9	7	5	NFFFYHVPL	NA	NetMHCpan	66.3	NA	NA	181	0.326	144.894	NA	NA	NA	225.48	NA	66.3	NA	159.9963223	NA	129.7926202	PW1829T5	1.071428571	1.071428571	FALSE	FALSE	FALSE	0	TRUE	0	Strelka2;Vardict	2	0.326	181	0	0	NA	3qA2	chr3-15331914-159913826	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	2	1	sgMsh2 aCD4/8	autochthonous
chr7	140400563	140400563	C	T	ENSMUST00000217167.1	NA	ENSMUSG00000062712	missense	R/H	161	Olfr531	ENSMUST00000217167.1:c.482G>A	ENSMUSP00000149942.1:p.Arg161His	H-2-Kb	9	6	6	SSLVLHLPF	SSLVLRLPF	NetMHC	236.8	440.72	1.861	159	0.34	273.498	426.461	1.559	440.72	236.8	397.2	273.4	412.2019102	273.5961615	503.7905305	302.1690645	PW1829T5	1.942857143	1.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.347	159	0	0	NA	7qF4	chr7-3897412-142893198	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	2	1	sgMsh2 aCD4/8	autochthonous
chr6	124580737	124580737	T	C	ENSMUST00000184647.1	1	ENSMUSG00000098470	missense	V/A	611	C1rb	ENSMUST00000184647.1:c.1832T>C	ENSMUSP00000139376.1:p.Val611Ala	H-2-Kb	9	5	7	PFHLRFARL	PFHLRFVRL	SMM	123.342	177.873	1.442	325	0.031	192.853	472.014	2.448	755.12	246.31	2338.4	1481.4	177.8729877	123.3417199	188.9078477	139.3958999	PW1829T5	-1.27E-16	0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.035	325	0	0	NA	6qF2	chr6-113104747-145247059	6	4	2	0.837	4.026820194	POOR GOF (79.9%)	1	0.168385552	sgMsh2 aCD4/8	autochthonous
chr3	19610496	19610496	TA	T	ENSMUST00000119133.1	1	ENSMUSG00000082766	FS	L/X	66	1700064H15Rik	ENSMUST00000119133.1:c.197del	ENSMUSP00000113751.1:p.Leu66TyrfsTer35	H-2-Kb	9	8	4	FFFYHVPLI	NA	NetMHC	288.55	NA	NA	181	0.326	319.083	NA	NA	NA	288.55	NA	476.1	NA	300.6837791	NA	337.4815227	PW1829T5	1.314285714	1.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.326	181	0	0	NA	3qA2	chr3-15331914-159913826	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	2	1	sgMsh2 aCD4/8	autochthonous
chr19	32811749	32811749	TA	T	ENSMUST00000013807.7	1	ENSMUSG00000013663	FS	L/X	182	Pten	ENSMUST00000013807.7:c.551del	ENSMUSP00000013807.7:p.Asn184IlefsTer15	H-2-Kb	9	5	9	YYYSYLLKI	YYYSYLLKN	NetMHCpan	186	6287.6	33.804	89	0.135	198.134	3288.431	16.597	5748.71	357.82	6287.6	186	828.1518951	191.0337056	579.7623384	205.2343263	PW1829T5	0.685714286	0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.149	89	69	2	0.028985507	19qC1	chr19-3628599-60987573	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	1	0.716841349	sgMsh2 aCD4/8	autochthonous
chr7	92619657	92619658	ACT	A	ENSMUST00000118157.7	1	ENSMUSG00000041343	FS	E/X	159	Ankrd42	ENSMUST00000118157.7:c.476_477del	ENSMUSP00000113767.1:p.Glu159ValfsTer55	H-2-Kb	9	50	0	SSHGRPPPL	NA	SMM	191.915	NA	NA	140	0.3	309.269	NA	NA	NA	406.58	NA	697	NA	191.9154771	NA	211.9580913	PW1829T5	-1.3	-1.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.316	140	7	1	0.142857143	7qE1	chr7-3897412-142893198	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	2	1	sgMsh2 aCD4/8	autochthonous
chr1	133386779	133386779	TG	T	ENSMUST00000153799.7	1	ENSMUSG00000070643	FS	P/X	329	Sox13	ENSMUST00000153799.7:c.987del	ENSMUSP00000119729.2:p.Ser330AlafsTer68	H-2-Kb	9	39	0	VGLWKTPPI	NA	NetMHCpan	262	NA	NA	46	0.174	432.747	NA	NA	NA	453.16	NA	262	NA	472.1826226	NA	412.3348098	PW1829T5	-0.057142857	0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.178	46	8	0	0	1qE4	chr1-4867294-193194439	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	1	0.856360806	sgMsh2 aCD4/8	autochthonous
chr10	40223765	40223765	AT	A	ENSMUST00000183309.7	1	ENSMUSG00000038510	FS	K/X	299	Rpf2	ENSMUST00000183309.7:c.897del	ENSMUSP00000138581.1:p.Lys299AsnfsTer22	H-2-Kb	9	21	0	TDYEHFLMV	NA	SMMPMBEC	150.401	NA	NA	209	0.086	280.017	NA	NA	NA	562.59	NA	369	NA	191.0337056	NA	150.4007493	PW1829T5	0.671428571	0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.095	209	48	2	0.041666667	10qB1	chr10-4030919-130453386	4	3	1	0.837	4.026820194	POOR GOF (79.9%)	1	0.457046498	sgMsh2 aCD4/8	autochthonous
chr11	49280973	49280973	T	C	ENSMUST00000213323.1	5	ENSMUSG00000059864	missense	L/P	275	Olfr1393	ENSMUST00000213323.1:c.824T>C	ENSMUSP00000149358.1:p.Leu275Pro	H-2-Kb	9	8	4	FVAPFYTII	FVALFYTII	NetMHCpan	187.9	587	3.124	306	0.042	379.883	367.366	0.967	466.66	603.55	587	187.9	190.1559854	319.9705442	268.0711022	439.7947088	PW1829T5	1.428571429	1.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.043	306	0	0	NA	11qB1.2	chr11-3133205-69579350	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	1	0.206873678	sgMsh2 aCD4/8	autochthonous
chr14	69797067	69797067	TG	T	ENSMUST00000022665.3	1	ENSMUSG00000022075	FS	P/X	236	Rhobtb2	ENSMUST00000022665.3:c.708del	ENSMUSP00000022665.2:p.Lys237SerfsTer64	H-2-Kb	9	34	0	SWKTRSVRM	NA	SMM	331.215	NA	NA	47	0.489	498.058	NA	NA	NA	605.05	NA	3139.9	NA	331.2150024	NA	391.0659467	PW1829T5	-1.185714286	-1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.488	47	2	0	0	14qD2	chr14-3072210-123592557	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	2	1	sgMsh2 aCD4/8	autochthonous
chr3	19610496	19610496	TA	T	ENSMUST00000119133.1	1	ENSMUSG00000082766	FS	L/X	66	1700064H15Rik	ENSMUST00000119133.1:c.197del	ENSMUSP00000113751.1:p.Leu66TyrfsTer35	H-2-Kb	9	6	6	SNFFFYHVP	SNFFFLPCS	SMM	70.976	124.483	1.754	181	0.326	172.607	334.011	1.935	989.9	1207.48	464.2	222.4	124.4829868	70.97575157	203.8215031	122.8146005	PW1829T5	0.928571429	0.928571429	FALSE	FALSE	TRUE	0	FALSE	0	Strelka2;Vardict	2	0.326	181	0	0	NA	3qA2	chr3-15331914-159913826	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	2	1	sgMsh2 aCD4/8	autochthonous
chr3	19610496	19610496	TA	T	ENSMUST00000119133.1	1	ENSMUSG00000082766	FS	L/X	66	1700064H15Rik	ENSMUST00000119133.1:c.197del	ENSMUSP00000113751.1:p.Leu66TyrfsTer35	H-2-Kb	10	6	6	SNFFFYHVPL	SNFFFLPCSF	NetMHCpan	5.7	87.1	15.281	181	0.326	307.974	277.579	0.901	160.4	11.54	87.1	5.7	394.7571456	604.407716	481.7924611	722.5368477	PW1829T5	1.071428571	1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.326	181	0	0	NA	3qA2	chr3-15331914-159913826	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	2	1	sgMsh2 aCD4/8	autochthonous
chr12	21340497	21340497	AT	A	ENSMUST00000101551.9	1	ENSMUSG00000052593	FS	N/X	408	Adam17	ENSMUST00000101551.9:c.1223del	ENSMUSP00000099087.3:p.Asn408IlefsTer32	H-2-Db	9	24	0	LQLMNWDII	NA	NetMHCpan	14.9	NA	NA	105	0.076	47.605	NA	NA	NA	16.03	NA	14.9	NA	79.18082091	NA	79.90427218	PW1829T6	0.971428571	0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.095	105	67	1	0.014925373	12qA1.3	chr12-3237715-119465464	4	2	2	0.838	3.980470555	NA	1	0.451246662	sgMsh2 aCD4/8	autochthonous
chr18	37762294	37762294	T	C	ENSMUST00000208907.1	1	ENSMUSG00000103081	missense	I/T	139	Pcdhgb8	ENSMUST00000208907.1:c.416T>C	ENSMUSP00000146671.1:p.Ile139Thr	H-2-Db	9	5	7	RFLQNSTVL	RFLQNSIVL	SMM	159.448	330.842	2.075	247	0.049	227.385	592.208	2.604	790.35	259.53	1026.3	515.5	330.8415143	159.4483392	394.0669386	195.2405399	PW1829T6	0.471428571	0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.051	247	2	0	0	18qB3	chr18-11715718-88974479	4	2	2	0.838	3.980470555	NA	1	0.242248208	sgMsh2 aCD4/8	autochthonous
chr11	31872817	31872819	CCTT	C	ENSMUST00000020543.12	1	ENSMUSG00000020300	inframe_del	PS/P	177-178	Cpeb4	ENSMUST00000020543.12:c.534_536del	ENSMUSP00000020543.6:p.Ser180del	H-2-Db	9	7	8	AAIAPSSTI	AAIAPSSST	SMM	412.686	13171.038	31.915	127	0.031	447.363	16787.219	37.525	28221.05	477.31	20403.4	1056.6	13171.03792	412.6862508	9301.86431	417.4168727	PW1829T6	0.985714286	0.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.027	127	49	1	0.020408163	11qA4	chr11-3133205-33843469	4	2	2	0.838	3.980470555	NA	1	0.128249051	sgMsh2 aCD4/8	autochthonous
chr7	23660434	23660434	T	C	ENSMUST00000173101.2	1	ENSMUSG00000035523	missense	V/A	248	Vmn1r172	ENSMUST00000173101.2:c.743T>C	ENSMUSP00000133887.1:p.Val248Ala	H-2-Kb	8	8	4	ITFACFYL	ITFVCFYL	SMMPMBEC	13.987	11.878	0.849	233	0.073	17.024	14.51	0.852	14.17	18.57	27.6	18.9	14.8504632	15.47889663	11.87790917	13.98749679	PW1829T6	1.671428571	1.771428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;MuSe;Vardict	3	0.082	233	0	0	NA	7qA3	chr7-4743149-143062472	4	2	2	0.838	3.980470555	NA	1	0.389497119	sgMsh2 aCD4/8	autochthonous
chr6	57389790	57389790	C	T	ENSMUST00000228574.1	NA	ENSMUSG00000091382	missense	V/I	260	Vmn1r18	ENSMUST00000228574.1:c.778G>A	ENSMUSP00000154497.1:p.Val260Ile	H-2-Kb	8	4	8	LSWMYVPI	LSWMYVPV	NetMHCpan	16.7	20.3	1.216	357	0.02	31.021	22.558	0.727	13.44	22.71	20.3	16.7	44.13061706	80.11982647	24.81646968	39.33145385	PW1829T6	0.857142857	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.021	357	0	0	NA	6qB3	chr6-3494310-113068119	4	3	1	0.838	3.980470555	NA	1	0.099749262	sgMsh2 aCD4/8	autochthonous
chr19	13502996	13502996	T	G	ENSMUST00000217001.1	2	ENSMUSG00000071629	missense	L/V	218	Olfr1477	ENSMUST00000217001.1:c.652T>G	ENSMUSP00000149565.1:p.Leu218Val	H-2-Kb	8	8	4	TSYVLISV	TSYLLISV	NetMHC	44.83	46.38	1.035	530	0.036	84.634	76.255	0.901	46.38	44.83	62.2	70.7	90.31086459	100.4014535	92.84104069	98.56892043	PW1829T6	1.971428571	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.036	530	0	0	NA	19qA	chr19-4320845-60987573	4	2	2	0.838	3.980470555	NA	1	0.170998735	sgMsh2 aCD4/8	autochthonous
chr5	34842840	34842840	G	A	ENSMUST00000080036.2	1	ENSMUSG00000029104	missense	R/H	1249	Htt	ENSMUST00000080036.2:c.3746G>A	ENSMUSP00000078945.2:p.Arg1249His	H-2-Kb	8	7	5	GGFLHSAL	GGFLRSAL	SMMPMBEC	103.214	541.677	5.248	201	0.025	142.481	742.141	5.209	1500.91	197.88	651.1	157.1	833.1822323	127.8615603	541.6765067	103.2143305	PW1829T6	1.114285714	1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.032	201	5	0	0	5qB2	chr5-3582301-150478141	4	2	2	0.838	3.980470555	NA	1	0.151998876	sgMsh2 aCD4/8	autochthonous
chr15	78673711	78673711	C	T	ENSMUST00000229441.1	NA	ENSMUSG00000043460	missense	R/H	212	Elfn2	ENSMUST00000229441.1:c.635G>A	ENSMUSP00000155111.1:p.Arg212His	H-2-Kb	8	5	7	VTKNYDHL	VTKNYDRL	SMM	107.582	83.127	0.773	147	0.265	163.733	166.734	1.018	242.74	212.72	260.9	229.3	83.12659663	107.5820957	90.7277206	114.746646	PW1829T6	-1.757142857	-1.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.242	147	0	0	NA	15qE1	chr15-3327923-103439122	4	2	2	0.838	3.980470555	NA	1	1	sgMsh2 aCD4/8	autochthonous
chr19	13502996	13502996	T	G	ENSMUST00000217001.1	2	ENSMUSG00000071629	missense	L/V	218	Olfr1477	ENSMUST00000217001.1:c.652T>G	ENSMUSP00000149565.1:p.Leu218Val	H-2-Kb	8	5	7	VILTSYVL	VILTSYLL	SMM	194.868	145.794	0.748	530	0.036	234.17	152.312	0.65	158.83	250.54	133.3	217.8	145.794117	194.8677632	206.8902384	281.0217928	PW1829T6	1.928571429	1.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.036	530	0	0	NA	19qA	chr19-4320845-60987573	4	2	2	0.838	3.980470555	NA	1	0.170998735	sgMsh2 aCD4/8	autochthonous
chr8	22065130	22065130	C	T	ENSMUST00000072572.12	1	ENSMUSG00000063362	missense	R/C	136	Alg11	ENSMUST00000072572.12:c.406C>T	ENSMUSP00000072382.6:p.Arg136Cys	H-2-Kb	8	6	6	VFLRKCYL	VFLRKRYL	SMM	277.805	253.945	0.914	205	0.259	306.772	285.099	0.929	278.63	291.63	898	377.5	253.9451951	277.8049629	291.5680954	321.9141004	PW1829T6	0.457142857	0.514285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.258	205	30	12	0.4	8qA2	chr8-3154030-126970168	4	2	2	0.838	3.980470555	NA	1	1	sgMsh2 aCD4/8	autochthonous
chr6	57389790	57389790	C	T	ENSMUST00000228574.1	NA	ENSMUSG00000091382	missense	V/I	260	Vmn1r18	ENSMUST00000228574.1:c.778G>A	ENSMUSP00000154497.1:p.Val260Ile	H-2-Kb	8	11	1	IVLTVQKL	VVLTVQKL	NetMHCpan	281.3	251.8	0.895	357	0.02	387.843	359.474	0.927	352.73	385.08	251.8	281.3	366.2182643	390.6069803	416.6198901	406.2000757	PW1829T6	1.128571429	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.021	357	0	0	NA	6qB3	chr6-3494310-113068119	4	3	1	0.838	3.980470555	NA	1	0.099749262	sgMsh2 aCD4/8	autochthonous
chr11	95750134	95750134	GA	G	ENSMUST00000107717.7	5	ENSMUSG00000075595	FS	E/X	295	Zfp652	ENSMUST00000107717.7:c.890del	ENSMUSP00000103345.1:p.Asn297ThrfsTer107	H-2-Kb	8	12	2	KTFSVFPV	NA	NetMHCpan	139.9	NA	NA	162	0.105	164.034	NA	NA	NA	451.48	NA	139.9	NA	159.1255801	NA	168.9429215	PW1829T6	1.557142857	1.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.097	162	47	0	0	11qD	chr11-82883757-96963708	4	2	2	0.838	3.980470555	NA	1	0.460746592	sgMsh2 aCD4/8	autochthonous
chr2	86890864	86890864	A	G	ENSMUST00000111576.2	3	ENSMUSG00000075170	missense	F/L	104	Olfr1097	ENSMUST00000111576.2:c.310T>C	ENSMUSP00000107202.1:p.Phe104Leu	H-2-Kb	8	6	6	TQLYFLVL	TQLYFFVL	NetMHCpan	110.5	85.7	0.776	301	0.02	196.237	118.507	0.604	133.3	501.85	85.7	110.5	119.0529058	193.5263029	117.9614222	198.9481935	PW1829T6	1.942857143	1.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.026	301	0	0	NA	2qD	chr2-4925576-181684255	4	2	2	0.838	3.980470555	NA	1	0.123499086	sgMsh2 aCD4/8	autochthonous
chr7	23660434	23660434	T	C	ENSMUST00000173101.2	1	ENSMUSG00000035523	missense	V/A	248	Vmn1r172	ENSMUST00000173101.2:c.743T>C	ENSMUSP00000133887.1:p.Val248Ala	H-2-Kb	8	9	3	TFACFYLL	TFVCFYLL	SMM	151.266	101.798	0.673	233	0.073	243.023	186.91	0.769	249.73	574.12	272.9	245.2	101.7981768	151.2655393	124.0909187	240.8463117	PW1829T6	2.314285714	2.314285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;MuSe;Vardict	3	0.082	233	0	0	NA	7qA3	chr7-4743149-143062472	4	2	2	0.838	3.980470555	NA	1	0.389497119	sgMsh2 aCD4/8	autochthonous
chr3	19144391	19144391	CA	C	ENSMUST00000029125.9	1	ENSMUSG00000027599	FS	L/X	135	Armc1	ENSMUST00000029125.9:c.404del	ENSMUSP00000029125.8:p.Leu135TrpfsTer11	H-2-Kb	8	6	6	KAQFFWEL	KAQFFLGT	NetMHCpan	149.3	1986.6	13.306	222	0.288	459.056	3918.761	8.537	6736.57	1628.41	1986.6	149.3	4233.894187	392.4099402	3603.628392	525.7024488	PW1829T6	0.471428571	0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.292	222	41	4	0.097560976	3qA2	chr3-5397880-159913826	4	2	2	0.838	3.980470555	NA	1	1	sgMsh2 aCD4/8	autochthonous
chr5	33657629	33657629	G	A	ENSMUST00000019439.8	1	ENSMUSG00000019295	missense	P/S	67	Tmem129	ENSMUST00000019439.8:c.199C>T	ENSMUSP00000019439.7:p.Pro67Ser	H-2-Kb	9	10	2	LSLGYYMGM	LPLGYYMGM	NetMHC	10.73	525.41	48.966	40	0.525	38.136	623.975	16.362	525.41	10.73	947.2	17.1	594.4427026	59.17114865	653.5066331	60.70856956	PW1829T6	0.6	0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.487	40	18	6	0.333333333	5qB2	chr5-3582301-150478141	4	2	2	0.838	3.980470555	NA	2	1	sgMsh2 aCD4/8	autochthonous
chr7	23660434	23660434	T	C	ENSMUST00000173101.2	1	ENSMUSG00000035523	missense	V/A	248	Vmn1r172	ENSMUST00000173101.2:c.743T>C	ENSMUSP00000133887.1:p.Val248Ala	H-2-Kb	9	8	4	ITFACFYLL	ITFVCFYLL	NetMHCpan	19.9	32.6	1.638	233	0.073	43.02	36.958	0.859	15.69	20.71	32.6	19.9	41.31521337	65.32960014	48.78092149	66.8728758	PW1829T6	2.314285714	2.314285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;MuSe;Vardict	3	0.082	233	0	0	NA	7qA3	chr7-4743149-143062472	4	2	2	0.838	3.980470555	NA	1	0.389497119	sgMsh2 aCD4/8	autochthonous
chr8	22065130	22065130	C	T	ENSMUST00000072572.12	1	ENSMUSG00000063362	missense	R/C	136	Alg11	ENSMUST00000072572.12:c.406C>T	ENSMUSP00000072382.6:p.Arg136Cys	H-2-Kb	9	5	7	FVFLRKCYL	FVFLRKRYL	NetMHCpan	125.1	149.9	1.198	205	0.259	131.532	153.127	1.164	99.74	136.85	149.9	125.1	156.3543614	126.2147176	195.99726	151.7923903	PW1829T6	0.457142857	1.1	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.258	205	30	12	0.4	8qA2	chr8-3154030-126970168	4	2	2	0.838	3.980470555	NA	1	1	sgMsh2 aCD4/8	autochthonous
chr17	68777876	68777876	C	T	ENSMUST00000093007.5	5	ENSMUSG00000041565	missense	A/V	594	L3mbtl4	ENSMUST00000093007.5:c.1781C>T	ENSMUSP00000094892.3:p.Ala594Val	H-2-Kb	9	3	9	VMRIKLGPV	VMRIKLGPA	SMM	116.442	464.633	3.99	183	0.022	130.004	701.671	5.397	938.71	138.32	3551.3	858.2	464.6329446	116.4420922	420.0006862	121.6886295	PW1829T6	0.3	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.031	183	0	0	NA	17qE1.2	chr17-3077483-90208269	4	2	2	0.838	3.980470555	NA	1	0.147248911	sgMsh2 aCD4/8	autochthonous
chr2	86890864	86890864	A	G	ENSMUST00000111576.2	3	ENSMUSG00000075170	missense	F/L	104	Olfr1097	ENSMUST00000111576.2:c.310T>C	ENSMUSP00000107202.1:p.Phe104Leu	H-2-Kb	9	6	6	TQLYFLVLL	TQLYFFVLL	NetMHC	171.45	45.24	0.264	301	0.02	200.661	69.532	0.347	45.24	171.45	45.5	193.3	93.56426278	208.0223508	97.10687985	227.6407459	PW1829T6	2.985714286	2.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.026	301	0	0	NA	2qD	chr2-4925576-181684255	4	2	2	0.838	3.980470555	NA	1	0.123499086	sgMsh2 aCD4/8	autochthonous
chr4	43023464	43023464	C	T	ENSMUST00000098109.8	1	ENSMUSG00000028454	missense	A/T	237	Pigo	ENSMUST00000098109.8:c.709G>A	ENSMUSP00000095713.2:p.Ala237Thr	H-2-Kb	9	8	4	VLITHFLGV	VLIAHFLGV	NetMHCpan	132.8	161	1.212	127	0.031	228.456	276.556	1.211	215.63	173.61	161	132.8	375.0679891	335.0502914	337.4815227	283.3022345	PW1829T6	1.571428571	2.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.043	127	9	0	0	4qA5	chr4-5799947-155091012	4	2	2	0.838	3.980470555	NA	1	0.204248489	sgMsh2 aCD4/8	autochthonous
chr11	59133099	59133099	TC	T	ENSMUST00000047441.13	5	ENSMUSG00000061462	FS	D/X	582	Obscn	ENSMUST00000047441.13:c.1744del	ENSMUSP00000038264.7:p.Asp582IlefsTer32	H-2-Kb	9	20	0	ITLARVLTL	NA	NetMHCpan	87.9	NA	NA	66	0.076	268.218	NA	NA	NA	227.94	NA	87.9	NA	413.1521337	NA	308.4963287	PW1829T6	1.742857143	1.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.096	66	0	0	NA	11qB1.3	chr11-58816716-62553345	4	2	2	0.838	3.980470555	NA	1	0.455996627	sgMsh2 aCD4/8	autochthonous
chr19	13502996	13502996	T	G	ENSMUST00000217001.1	2	ENSMUSG00000071629	missense	L/V	218	Olfr1477	ENSMUST00000217001.1:c.652T>G	ENSMUSP00000149565.1:p.Leu218Val	H-2-Kb	9	5	7	VILTSYVLI	VILTSYLLI	SMMPMBEC	191.095	215.899	1.13	530	0.036	214.851	228.099	1.062	264.09	232.62	240.3	221.2	211.4024421	208.5018919	215.8986864	191.0952975	PW1829T6	1.928571429	1.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.036	530	0	0	NA	19qA	chr19-4320845-60987573	4	2	2	0.838	3.980470555	NA	1	0.170998735	sgMsh2 aCD4/8	autochthonous
chr5	107419788	107419788	G	A	ENSMUST00000049146.11	2	ENSMUSG00000033805	missense	R/Q	204	Ephx4	ENSMUST00000049146.11:c.611G>A	ENSMUSP00000043764.5:p.Arg204Gln	H-2-Kb	9	8	4	YILQHPAQL	YILRHPAQL	NetMHC	281.61	138.88	0.493	239	0.071	467.691	369.05	0.789	138.88	281.61	281.8	470.6	559.8993973	601.3260247	456.2995075	464.7827487	PW1829T6	-0.342857143	0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.073	239	4	0	0	5qE5	chr5-3582301-150478141	4	2	2	0.838	3.980470555	NA	1	0.346747435	sgMsh2 aCD4/8	autochthonous
chr6	57389790	57389790	C	T	ENSMUST00000228574.1	NA	ENSMUSG00000091382	missense	V/I	260	Vmn1r18	ENSMUST00000228574.1:c.778G>A	ENSMUSP00000154497.1:p.Val260Ile	H-2-Kb	9	4	8	LSWMYVPIV	LSWMYVPVV	NetMHCpan	199.2	160.9	0.808	357	0.02	329.317	332.066	1.008	305.83	291.14	160.9	199.2	578.2424886	486.5304206	358.3026333	367.4937861	PW1829T6	1.571428571	1.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.021	357	0	0	NA	6qB3	chr6-3494310-113068119	4	3	1	0.838	3.980470555	NA	1	0.099749262	sgMsh2 aCD4/8	autochthonous
chr15	93254497	93254497	TA	T	ENSMUST00000057896.4	5	ENSMUSG00000036197	FS	L/X	218	Gxylt1	ENSMUST00000057896.4:c.653del	ENSMUSP00000081947.3:p.Leu218TyrfsTer11	H-2-Kb	9	6	6	TDILFYDLL	TDILFLRPV	SMMPMBEC	179.577	834.161	4.645	108	0.278	293.956	842.781	2.867	1509.03	389.71	851.4	526.9	831.9744705	198.2028979	834.1612282	179.5767056	PW1829T6	1.985714286	1.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.27	108	9	0	0	15qE3	chr15-3327923-103439122	4	2	2	0.838	3.980470555	NA	1	1	sgMsh2 aCD4/8	autochthonous
chr2	86890864	86890864	A	G	ENSMUST00000111576.2	3	ENSMUSG00000075170	missense	F/L	104	Olfr1097	ENSMUST00000111576.2:c.310T>C	ENSMUSP00000107202.1:p.Phe104Leu	H-2-Kb	9	5	7	FTQLYFLVL	FTQLYFFVL	SMMPMBEC	312.069	306.373	0.982	301	0.02	333.19	335.936	1.008	383.17	467.11	365.5	332.1	299.3022626	334.2796971	306.3726549	312.0685478	PW1829T6	1.942857143	1.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.026	301	0	0	NA	2qD	chr2-4925576-181684255	4	2	2	0.838	3.980470555	NA	1	0.123499086	sgMsh2 aCD4/8	autochthonous
chr1	152506974	152506974	C	T	ENSMUST00000044311.8	1	ENSMUSG00000032649	missense	P/S	526	Colgalt2	ENSMUST00000044311.8:c.1576C>T	ENSMUSP00000037532.8:p.Pro526Ser	H-2-Db	9	11	1	SIMYNKHPV	PIMYNKHPV	NetMHCpan	161.3	6499	40.291	91	0.066	232.804	4312.516	18.524	10281.59	212.9	6499	161.3	1616.664865	252.7085873	2126.032994	294.1507771	PW1829T7	-1.057142857	-0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.085	91	0	0	NA	1qG2	chr1-4867294-193194439	4	3	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.55722081	sgMsh2 aCD4/8	autochthonous
chr2	59815382	59815382	GC	G	ENSMUST00000037526.10	5	ENSMUSG00000035168	FS	A/X	933	Tanc1	ENSMUST00000037526.10:c.2802del	ENSMUSP00000036003.4:p.Ile935SerfsTer32	H-2-Db	9	27	0	LSFWNLAPA	NA	SMMPMBEC	154.373	NA	NA	112	0.339	164.873	NA	NA	NA	409.96	NA	158.5	NA	171.2458281	NA	154.3725222	PW1829T7	0.6	1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.339	112	11	1	0.090909091	2qC1.1	chr2-34176466-150118344	5	4	1	0.648	4.247989236	POOR GOF (79.5%)	2	1	sgMsh2 aCD4/8	autochthonous
chr3	94317564	94317564	A	C	ENSMUST00000049822.9	1	ENSMUSG00000028145	missense	T/P	83	Them4	ENSMUST00000049822.9:c.247A>C	ENSMUSP00000062841.7:p.Thr83Pro	H-2-Db	9	4	8	RAIQEFQPL	RAIQEFQTL	NetMHCpan	152.7	368.9	2.416	161	0.075	435.749	827.309	1.899	1000.63	490.81	368.9	152.7	1034.236832	648.0671381	653.988332	380.6887124	PW1829T7	-0.142857143	-0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.082	161	37	2	0.054054054	3qF2.1	chr3-5397880-159913826	6	3	3	0.648	4.247989236	POOR GOF (79.5%)	1	0.537554193	sgMsh2 aCD4/8	autochthonous
chr4	124856963	124856963	C	A	ENSMUST00000064444.7	3	ENSMUSG00000042763	missense	Q/H	333	Maneal	ENSMUST00000064444.7:c.999G>T	ENSMUSP00000066000.7:p.Gln333His	H-2-Db	9	8	4	SSHHNWKAV	SSHQNWKAV	SMM	223.162	163.915	0.735	155	0.103	456.956	185.508	0.406	131.24	559.45	207.1	753.2	163.9154914	223.1618741	268.2686971	354.4622582	PW1829T7	-1.242857143	-1.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.107	155	0	0	NA	4qD2.2	chr4-116816541-155946445	3	2	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.701442667	sgMsh2 aCD4/8	autochthonous
chr3	106203846	106203846	T	C	ENSMUST00000082219.5	1	ENSMUSG00000063779	missense	D/G	244	Chil4	ENSMUST00000082219.5:c.731A>G	ENSMUSP00000080851.5:p.Asp244Gly	H-2-Db	9	5	7	SADLNVGSI	SADLNVDSI	NetMHCpan	229	31.7	0.138	147	0.041	334.228	71.836	0.215	61.15	659.13	31.7	229	101.7700528	391.3992598	82.52204846	277.0575567	PW1829T7	0.614285714	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.05	147	2	0	0	3qF2.2	chr3-5397880-159913826	6	3	3	0.648	4.247989236	POOR GOF (79.5%)	1	0.327776947	sgMsh2 aCD4/8	autochthonous
chr3	122138467	122138467	G	A	ENSMUST00000013995.12	1	ENSMUSG00000028125	missense	V/M	1465	Abca4	ENSMUST00000013995.12:c.4393G>A	ENSMUSP00000013995.8:p.Val1465Met	H-2-Db	9	10	2	SMSPNITHL	SVSPNITHL	NetMHCpan	175.4	783.5	4.467	90	0.089	420.738	1743.285	4.143	7002.78	834.42	783.5	175.4	1565.38079	357.7832461	1921.188596	483.6932202	PW1829T7	-0.214285714	-0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.118	90	0	0	NA	3qG1	chr3-5397880-159913826	6	3	3	0.648	4.247989236	POOR GOF (79.5%)	1	0.773553595	sgMsh2 aCD4/8	autochthonous
chr19	45027738	45027738	GA	G	ENSMUST00000169459.3	5	ENSMUSG00000074818	FS	I/X	981	Pdzd7	ENSMUST00000169459.3:c.2943del	ENSMUSP00000133273.2:p.Leu982SerfsTer20	H-2-Kb	8	11	2	ISPSYLPL	NA	NetMHC	3.36	NA	NA	92	0.054	8.572	NA	NA	NA	3.36	NA	7.6	NA	9.544210297	NA	10.44094962	PW1829T7	0.214285714	0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.067	92	2	0	0	19qC3	chr19-3628599-60987573	4	2	2	0.648	4.247989236	POOR GOF (79.5%)	1	0.439221109	sgMsh2 aCD4/8	autochthonous
chr2	36640346	36640346	AT	A	ENSMUST00000076850.1	NA	ENSMUSG00000059251	FS	Y/X	102	Olfr345	ENSMUST00000076850.1:c.312del	ENSMUSP00000076122.1:p.Phe104LeufsTer33	H-2-Kb	8	7	7	VSQVYFLL	VSQVYFFA	NetMHC	7.17	421.21	58.746	364	0.239	13.372	307.368	22.986	421.21	7.17	485.2	13.2	191.7520431	13.54378341	193.5263029	15.91255801	PW1829T7	1.285714286	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.238	364	0	0	NA	2qB	chr2-34176466-150118344	5	4	1	0.648	4.247989236	POOR GOF (79.5%)	2	1	sgMsh2 aCD4/8	autochthonous
chr2	59815382	59815382	GC	G	ENSMUST00000037526.10	5	ENSMUSG00000035168	FS	A/X	933	Tanc1	ENSMUST00000037526.10:c.2802del	ENSMUSP00000036003.4:p.Ile935SerfsTer32	H-2-Kb	8	25	0	LSLSFWNL	NA	NetMHCpan	15.2	NA	NA	112	0.339	15.551	NA	NA	NA	18.51	NA	15.2	NA	15.6221211	NA	15.47889663	PW1829T7	0.628571429	0.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.339	112	11	1	0.090909091	2qC1.1	chr2-34176466-150118344	5	4	1	0.648	4.247989236	POOR GOF (79.5%)	2	1	sgMsh2 aCD4/8	autochthonous
chr1	128274909	128274909	AT	A	ENSMUST00000027592.5	1	ENSMUSG00000026353	FS	N/X	429	Ubxn4	ENSMUST00000027592.5:c.1292del	ENSMUSP00000027592.3:p.Leu431TyrfsTer55	H-2-Kb	8	10	4	SNFYLAIL	NA	NetMHCpan	11.5	NA	NA	118	0.076	38.695	NA	NA	NA	19.88	NA	11.5	NA	57.50955406	NA	77.04420888	PW1829T7	1.7	1.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.066	118	267	21	0.078651685	1qE3	chr1-4867294-193194439	4	3	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.43266557	sgMsh2 aCD4/8	autochthonous
chr3	94317564	94317564	A	C	ENSMUST00000049822.9	1	ENSMUSG00000028145	missense	T/P	83	Them4	ENSMUST00000049822.9:c.247A>C	ENSMUSP00000062841.7:p.Thr83Pro	H-2-Kb	8	5	7	AIQEFQPL	AIQEFQTL	NetMHC	20.04	79.16	3.95	161	0.075	63.38	125.985	1.988	79.16	20.04	110.8	70.3	141.1692151	56.4598864	211.2224132	80.67519058	PW1829T7	-0.142857143	-0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.082	161	37	2	0.054054054	3qF2.1	chr3-5397880-159913826	6	3	3	0.648	4.247989236	POOR GOF (79.5%)	1	0.537554193	sgMsh2 aCD4/8	autochthonous
chr13	19729390	19729390	TA	T	ENSMUST00000151029.2	1	ENSMUSG00000047462	FS	L/X	164	Gpr141b	ENSMUST00000151029.2:c.491del	ENSMUSP00000158601.1:p.Leu164TyrfsTer30	H-2-Kb	8	24	0	GALSFINL	NA	NetMHC	45.54	NA	NA	110	0.227	60.635	NA	NA	NA	45.54	NA	48.2	NA	92.41447486	NA	73.07015019	PW1829T7	1.771428571	1.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2273	110	0	0	NA	13qA2	chr13-4065516-119495179	4	3	1	0.648	4.247989236	POOR GOF (79.5%)	1	1	sgMsh2 aCD4/8	autochthonous
chr1	128274909	128274909	AT	A	ENSMUST00000027592.5	1	ENSMUSG00000026353	FS	N/X	429	Ubxn4	ENSMUST00000027592.5:c.1292del	ENSMUSP00000027592.3:p.Leu431TyrfsTer55	H-2-Kb	8	9	5	ISNFYLAI	ISNFLFSN	NetMHCpan	30.5	4814.8	157.862	118	0.076	94.497	2977.99	31.514	4464.08	101.12	4814.8	30.5	1187.790917	91.77829809	1491.900983	97.21650414	PW1829T7	1.042857143	1.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.066	118	267	21	0.078651685	1qE3	chr1-4867294-193194439	4	3	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.43266557	sgMsh2 aCD4/8	autochthonous
chr2	36640346	36640346	AT	A	ENSMUST00000076850.1	NA	ENSMUSG00000059251	FS	Y/X	102	Olfr345	ENSMUST00000076850.1:c.312del	ENSMUSP00000076122.1:p.Phe104LeufsTer33	H-2-Kb	8	10	4	VYFLLYLL	NA	SMM	88.459	NA	NA	364	0.239	99.012	NA	NA	NA	103.86	NA	99	NA	88.45858744	NA	99.0238939	PW1829T7	2.2	2.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.238	364	0	0	NA	2qB	chr2-34176466-150118344	5	4	1	0.648	4.247989236	POOR GOF (79.5%)	2	1	sgMsh2 aCD4/8	autochthonous
chr3	96651783	96651783	TG	T	ENSMUST00000119365.7	1	ENSMUSG00000090210	FS	W/X	396	Itga10	ENSMUST00000119365.7:c.1193del	ENSMUSP00000112393.1:p.Gly398AlafsTer68	H-2-Kb	8	22	0	AAFSHHKL	NA	NetMHCpan	40.1	NA	NA	162	0.117	98.363	NA	NA	NA	117.9	NA	40.1	NA	96.32521787	NA	100.4014535	PW1829T7	-0.385714286	-0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.115	162	1	0	0	3qF2.1	chr3-5397880-159913826	6	3	3	0.648	4.247989236	POOR GOF (79.5%)	1	0.753886979	sgMsh2 aCD4/8	autochthonous
chr19	12298734	12298734	G	A	ENSMUST00000087812.1	NA	ENSMUSG00000067513	missense	P/S	133	Olfr1436	ENSMUST00000087812.1:c.397C>T	ENSMUSP00000085113.1:p.Pro133Ser	H-2-Kb	8	10	2	NSLLYSSV	NPLLYSSV	NetMHCpan	120.1	4787.7	39.864	582	0.052	155.997	3042.051	19.501	5438.85	131.8	4787.7	120.1	1204.314735	181.4429089	1296.402918	180.1938647	PW1829T7	1.157142857	1.157142857	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;MuSe;Vardict	3	0.055	582	0	0	NA	19qA	chr19-3628599-60987573	4	2	2	0.648	4.247989236	POOR GOF (79.5%)	1	0.360554642	sgMsh2 aCD4/8	autochthonous
chr2	36640346	36640346	AT	A	ENSMUST00000076850.1	NA	ENSMUSG00000059251	FS	Y/X	102	Olfr345	ENSMUST00000076850.1:c.312del	ENSMUSP00000076122.1:p.Phe104LeufsTer33	H-2-Kb	8	9	5	QVYFLLYL	QVYFFAIF	NetMHCpan	82.3	55.6	0.676	364	0.239	153.13	160.549	1.048	90.03	165.74	55.6	82.3	231.0681036	140.5206015	272.1071791	201.251905	PW1829T7	2.257142857	2.257142857	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.238	364	0	0	NA	2qB	chr2-34176466-150118344	5	4	1	0.648	4.247989236	POOR GOF (79.5%)	2	1	sgMsh2 aCD4/8	autochthonous
chr13	19729390	19729390	TA	T	ENSMUST00000151029.2	1	ENSMUSG00000047462	FS	L/X	164	Gpr141b	ENSMUST00000151029.2:c.491del	ENSMUSP00000158601.1:p.Leu164TyrfsTer30	H-2-Kb	8	9	3	FFYNMAQI	NA	SMMPMBEC	177.313	NA	NA	110	0.227	194.651	NA	NA	NA	210.76	NA	525.1	NA	178.5418375	NA	177.3127641	PW1829T7	0.385714286	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2273	110	0	0	NA	13qA2	chr13-4065516-119495179	4	3	1	0.648	4.247989236	POOR GOF (79.5%)	1	1	sgMsh2 aCD4/8	autochthonous
chr2	119139420	119139420	GT	G	ENSMUST00000094695.11	1	ENSMUSG00000070730	FS	T/X	387	Rmdn3	ENSMUST00000094695.11:c.1159del	ENSMUSP00000092283.5:p.Thr387ArgfsTer46	H-2-Kb	8	37	0	YSQDFQKL	NA	SMM	227.898	NA	NA	153	0.105	263.57	NA	NA	NA	233.55	NA	302.9	NA	227.8977303	NA	293.5891489	PW1829T7	-1.228571429	-1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1046	153	40	3	0.075	2qE5	chr2-34176466-150118344	5	4	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.685709374	sgMsh2 aCD4/8	autochthonous
chr1	128274909	128274909	AT	A	ENSMUST00000027592.5	1	ENSMUSG00000026353	FS	N/X	429	Ubxn4	ENSMUST00000027592.5:c.1292del	ENSMUSP00000027592.3:p.Leu431TyrfsTer55	H-2-Kb	8	15	0	AILLLHRL	NA	SMM	165.478	NA	NA	118	0.076	189	NA	NA	NA	247.15	NA	207.1	NA	165.4778997	NA	170.8991883	PW1829T7	1.714285714	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.066	118	267	21	0.078651685	1qE3	chr1-4867294-193194439	4	3	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.43266557	sgMsh2 aCD4/8	autochthonous
chr3	122138467	122138467	G	A	ENSMUST00000013995.12	1	ENSMUSG00000028125	missense	V/M	1465	Abca4	ENSMUST00000013995.12:c.4393G>A	ENSMUSP00000013995.8:p.Val1465Met	H-2-Kb	8	11	1	MSPNITHL	VSPNITHL	NetMHC	375.95	82.63	0.22	90	0.089	470.876	217.935	0.463	82.63	375.95	173	384.9	284.2758718	606.3732022	262.8693795	556.8522772	PW1829T7	-0.214285714	-0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.118	90	0	0	NA	3qG1	chr3-5397880-159913826	6	3	3	0.648	4.247989236	POOR GOF (79.5%)	1	0.773553595	sgMsh2 aCD4/8	autochthonous
chr11	23403680	23403680	A	G	ENSMUST00000180046.7	5	ENSMUSG00000056342	missense	T/A	1496	Usp34	ENSMUST00000180046.7:c.4486A>G	ENSMUSP00000137430.1:p.Thr1496Ala	H-2-Kb	8	10	2	SAGSYSDL	STGSYSDL	SMMPMBEC	325.642	205.94	0.632	119	0.067	370.963	308.679	0.832	391.03	392.19	959.7	1124.9	226.3288934	349.7357273	205.9396641	325.64169	PW1829T7	-0.171428571	-0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.063	119	34	4	0.117647059	11qA3.2	chr11-3133205-69579350	4	2	2	0.648	4.247989236	POOR GOF (79.5%)	1	0.412998953	sgMsh2 aCD4/8	autochthonous
chr19	45027738	45027738	GA	G	ENSMUST00000169459.3	5	ENSMUSG00000074818	FS	I/X	981	Pdzd7	ENSMUST00000169459.3:c.2943del	ENSMUSP00000133273.2:p.Leu982SerfsTer20	H-2-Kb	8	23	0	SSSLSAQL	NA	SMM	340.989	NA	NA	92	0.054	391.633	NA	NA	NA	418.73	NA	1367.2	NA	340.9887101	NA	364.5356443	PW1829T7	0.5	0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.067	92	2	0	0	19qC3	chr19-3628599-60987573	4	2	2	0.648	4.247989236	POOR GOF (79.5%)	1	0.439221109	sgMsh2 aCD4/8	autochthonous
chr16	91034164	91034164	T	G	ENSMUST00000118522.7	1	ENSMUSG00000022974	missense	E/D	441	Paxbp1	ENSMUST00000118522.7:c.1323A>C	ENSMUSP00000113835.1:p.Glu441Asp	H-2-Kb	8	9	3	IGDRYKFL	IGERYKFL	SMMPMBEC	110.596	85.455	0.773	161	0.05	301.344	330.46	1.097	530.98	475.12	674.3	653.2	129.9391436	127.5674869	85.45549615	110.5961477	PW1829T7	-1	-0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.054	161	42	1	0.023809524	16qC3.3	chr16-3746585-97850976	4	3	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.353999103	sgMsh2 aCD4/8	autochthonous
chr2	86423023	86423023	A	G	ENSMUST00000217481.1	5	ENSMUSG00000090059	missense	Y/H	218	Olfr1062	ENSMUST00000217481.1:c.652T>C	ENSMUSP00000149742.1:p.Tyr218His	H-2-Kb	8	7	5	VLISHFNI	VLISYFNI	NetMHCpan	142.4	37.8	0.265	292	0.062	381.096	79.049	0.207	73.23	519.15	37.8	142.4	102.0328459	395.1299959	84.86722465	367.0624846	PW1829T7	1.157142857	1.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.065	292	0	0	NA	2qD	chr2-34176466-150118344	5	4	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.426110031	sgMsh2 aCD4/8	autochthonous
chr2	91485886	91485886	G	T	ENSMUST00000028689.3	1	ENSMUSG00000027253	missense	R/L	783	Lrp4	ENSMUST00000028689.3:c.2348G>T	ENSMUSP00000028689.3:p.Arg783Leu	H-2-Kb	8	4	8	VALDWDSL	VALDWDSR	SMM	340.204	7598.712	22.336	76	0.118	471.208	15326.39	32.526	18581.87	560.7	23105.4	672.6	7598.71227	340.2044578	12070.90967	381.7156799	PW1829T7	0.1	0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.125	76	0	0	NA	2qE1	chr2-34176466-150118344	5	4	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.819442368	sgMsh2 aCD4/8	autochthonous
chr13	19729390	19729390	TA	T	ENSMUST00000151029.2	1	ENSMUSG00000047462	FS	L/X	164	Gpr141b	ENSMUST00000151029.2:c.491del	ENSMUSP00000158601.1:p.Leu164TyrfsTer30	H-2-Kb	8	6	6	LPIFFYNM	LPIFFLQY	SMM	226.851	11905.291	52.481	110	0.227	300.762	12622.045	41.967	18688.34	758.07	13338.8	354.5	11905.29058	226.8506354	6587.793843	247.0244836	PW1829T7	0.8	1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2273	110	0	0	NA	13qA2	chr13-4065516-119495179	4	3	1	0.648	4.247989236	POOR GOF (79.5%)	1	1	sgMsh2 aCD4/8	autochthonous
chr2	86423023	86423023	A	G	ENSMUST00000217481.1	5	ENSMUSG00000090059	missense	Y/H	218	Olfr1062	ENSMUST00000217481.1:c.652T>C	ENSMUSP00000149742.1:p.Tyr218His	H-2-Kb	8	9	3	ISHFNIVL	ISYFNIVL	NetMHCpan	319.2	24.4	0.076	292	0.062	492.313	44.848	0.091	96.51	1426.61	24.4	319.2	44.64162552	525.7024488	45.05468939	458.9231861	PW1829T7	1.114285714	1.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.065	292	0	0	NA	2qD	chr2-34176466-150118344	5	4	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.426110031	sgMsh2 aCD4/8	autochthonous
chr1	128274909	128274909	AT	A	ENSMUST00000027592.5	1	ENSMUSG00000026353	FS	N/X	429	Ubxn4	ENSMUST00000027592.5:c.1292del	ENSMUSP00000027592.3:p.Leu431TyrfsTer55	H-2-Kb	9	9	5	ISNFYLAIL	NA	NetMHCpan	35.1	NA	NA	118	0.076	80.25	NA	NA	NA	57.64	NA	35.1	NA	116.1742828	NA	102.8608242	PW1829T7	1.7	1.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.066	118	267	21	0.078651685	1qE3	chr1-4867294-193194439	4	3	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.43266557	sgMsh2 aCD4/8	autochthonous
chr13	19729390	19729390	TA	T	ENSMUST00000151029.2	1	ENSMUSG00000047462	FS	L/X	164	Gpr141b	ENSMUST00000151029.2:c.491del	ENSMUSP00000158601.1:p.Leu164TyrfsTer30	H-2-Kb	9	23	0	SGALSFINL	NA	NetMHC	74.88	NA	NA	110	0.227	344.071	NA	NA	NA	74.88	NA	93.7	NA	594.4427026	NA	745.1607995	PW1829T7	1.771428571	1.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2273	110	0	0	NA	13qA2	chr13-4065516-119495179	4	3	1	0.648	4.247989236	POOR GOF (79.5%)	1	1	sgMsh2 aCD4/8	autochthonous
chr5	14712715	14712715	A	G	ENSMUST00000030691.16	5	ENSMUSG00000061601	missense	N/S	3734	Pclo	ENSMUST00000030691.16:c.11201A>G	ENSMUSP00000030691.9:p.Asn3734Ser	H-2-Kb	9	10	2	ISRRKEALL	INRRKEALL	NetMHC	74.98	125.17	1.669	157	0.076	159.706	173.847	1.089	125.17	74.98	392.6	409.4	165.6189397	155.6359783	182.0748664	163.775902	PW1829T7	-1	-1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.075	157	0	0	NA	5qA1	chr5-3582301-110893400	5	3	2	0.648	4.247989236	POOR GOF (79.5%)	1	0.491665421	sgMsh2 aCD4/8	autochthonous
chr1	128274909	128274909	AT	A	ENSMUST00000027592.5	1	ENSMUSG00000026353	FS	N/X	429	Ubxn4	ENSMUST00000027592.5:c.1292del	ENSMUSP00000027592.3:p.Leu431TyrfsTer55	H-2-Kb	9	10	4	SNFYLAILL	NA	NetMHCpan	36.5	NA	NA	118	0.076	106.216	NA	NA	NA	77.19	NA	36.5	NA	135.2415065	NA	196.4490803	PW1829T7	2.742857143	2.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.066	118	267	21	0.078651685	1qE3	chr1-4867294-193194439	4	3	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.43266557	sgMsh2 aCD4/8	autochthonous
chr13	19729390	19729390	TA	T	ENSMUST00000151029.2	1	ENSMUSG00000047462	FS	L/X	164	Gpr141b	ENSMUST00000151029.2:c.491del	ENSMUSP00000158601.1:p.Leu164TyrfsTer30	H-2-Kb	9	8	4	IFFYNMAQI	NA	NetMHC	97.59	NA	NA	110	0.227	209.159	NA	NA	NA	97.59	NA	215.9	NA	300.6837791	NA	202.4184057	PW1829T7	0.385714286	1.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2273	110	0	0	NA	13qA2	chr13-4065516-119495179	4	3	1	0.648	4.247989236	POOR GOF (79.5%)	1	1	sgMsh2 aCD4/8	autochthonous
chr3	94317564	94317564	A	C	ENSMUST00000049822.9	1	ENSMUSG00000028145	missense	T/P	83	Them4	ENSMUST00000049822.9:c.247A>C	ENSMUSP00000062841.7:p.Thr83Pro	H-2-Kb	9	4	8	RAIQEFQPL	RAIQEFQTL	NetMHC	107.45	353.65	3.291	161	0.075	301.551	614.428	2.038	353.65	107.45	235.2	113.2	875.205423	489.9028884	955.5424822	525.1096507	PW1829T7	-0.142857143	-0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.082	161	37	2	0.054054054	3qF2.1	chr3-5397880-159913826	6	3	3	0.648	4.247989236	POOR GOF (79.5%)	1	0.537554193	sgMsh2 aCD4/8	autochthonous
chr2	36640346	36640346	AT	A	ENSMUST00000076850.1	NA	ENSMUSG00000059251	FS	Y/X	102	Olfr345	ENSMUST00000076850.1:c.312del	ENSMUSP00000076122.1:p.Phe104LeufsTer33	H-2-Kb	9	8	6	SQVYFLLYL	SQVYFFAIF	NetMHC	117.01	99.05	0.847	364	0.239	189.262	151.459	0.8	99.05	117.01	113.2	122.6	189.7186388	255.9234019	247.3147393	350.1466697	PW1829T7	2.257142857	2.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.238	364	0	0	NA	2qB	chr2-34176466-150118344	5	4	1	0.648	4.247989236	POOR GOF (79.5%)	2	1	sgMsh2 aCD4/8	autochthonous
chr13	19729390	19729390	TA	T	ENSMUST00000151029.2	1	ENSMUSG00000047462	FS	L/X	164	Gpr141b	ENSMUST00000151029.2:c.491del	ENSMUSP00000158601.1:p.Leu164TyrfsTer30	H-2-Kb	9	5	7	FLPIFFYNM	FLPIFFLQY	NetMHC	139.72	8142.1	58.274	110	0.227	404.613	4719.804	11.665	8142.1	139.72	9057.2	287.9	1297.507868	521.3267383	1205.729815	641.5787927	PW1829T7	0.8	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2273	110	0	0	NA	13qA2	chr13-4065516-119495179	4	3	1	0.648	4.247989236	POOR GOF (79.5%)	1	1	sgMsh2 aCD4/8	autochthonous
chr2	36640346	36640346	AT	A	ENSMUST00000076850.1	NA	ENSMUSG00000059251	FS	Y/X	102	Olfr345	ENSMUST00000076850.1:c.312del	ENSMUSP00000076122.1:p.Phe104LeufsTer33	H-2-Kb	9	9	5	QVYFLLYLL	NA	SMM	83.774	NA	NA	364	0.239	147.942	NA	NA	NA	143.39	NA	277.3	NA	83.77414421	NA	152.4930322	PW1829T7	2.2	2.257142857	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.238	364	0	0	NA	2qB	chr2-34176466-150118344	5	4	1	0.648	4.247989236	POOR GOF (79.5%)	2	1	sgMsh2 aCD4/8	autochthonous
chr2	119139420	119139420	GT	G	ENSMUST00000094695.11	1	ENSMUSG00000070730	FS	T/X	387	Rmdn3	ENSMUST00000094695.11:c.1159del	ENSMUSP00000092283.5:p.Thr387ArgfsTer46	H-2-Kb	9	45	0	DGYIFLSAI	NA	NetMHC	187.49	NA	NA	153	0.105	309.473	NA	NA	NA	187.49	NA	212.4	NA	406.5462879	NA	510.7989549	PW1829T7	2.185714286	2.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1046	153	40	3	0.075	2qE5	chr2-34176466-150118344	5	4	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.685709374	sgMsh2 aCD4/8	autochthonous
chr2	36640346	36640346	AT	A	ENSMUST00000076850.1	NA	ENSMUSG00000059251	FS	Y/X	102	Olfr345	ENSMUST00000076850.1:c.312del	ENSMUSP00000076122.1:p.Phe104LeufsTer33	H-2-Kb	9	10	4	VYFLLYLLI	NA	SMM	49.786	NA	NA	364	0.239	133.164	NA	NA	NA	209.41	NA	430.5	NA	49.786317	NA	56.91804832	PW1829T7	3.028571429	3.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.238	364	0	0	NA	2qB	chr2-34176466-150118344	5	4	1	0.648	4.247989236	POOR GOF (79.5%)	2	1	sgMsh2 aCD4/8	autochthonous
chr2	25243987	25243987	TG	T	ENSMUST00000114355.1	NA	ENSMUSG00000044628	FS	W/X	231	Rnf208	ENSMUST00000114355.1:c.698del	ENSMUSP00000109995.1:p.Gly233ValfsTer60	H-2-Kb	9	61	0	SSGNWLCPV	NA	NetMHC	227.65	NA	NA	67	0.09	490.55	NA	NA	NA	227.65	NA	987.3	NA	488.776143	NA	492.3228579	PW1829T7	0.585714286	0.585714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.094	67	2	0	0	2qA3	chr2-25055338-34176218	4	2	2	0.648	4.247989236	POOR GOF (79.5%)	1	0.616220661	sgMsh2 aCD4/8	autochthonous
chr2	59815382	59815382	GC	G	ENSMUST00000037526.10	5	ENSMUSG00000035168	FS	A/X	933	Tanc1	ENSMUST00000037526.10:c.2802del	ENSMUSP00000036003.4:p.Ile935SerfsTer32	H-2-Kb	9	27	0	LSFWNLAPA	NA	NetMHCpan	215.3	NA	NA	112	0.339	369.294	NA	NA	NA	253.02	NA	215.3	NA	618.1729539	NA	485.5679351	PW1829T7	0.6	1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.339	112	11	1	0.090909091	2qC1.1	chr2-34176466-150118344	5	4	1	0.648	4.247989236	POOR GOF (79.5%)	2	1	sgMsh2 aCD4/8	autochthonous
chr15	25801174	25801174	C	T	ENSMUST00000110457.7	1	ENSMUSG00000022272	missense	T/M	1483	Myo10	ENSMUST00000110457.7:c.4448C>T	ENSMUSP00000106087.1:p.Thr1483Met	H-2-Kb	9	5	7	HCYRLYMKL	HCYRLYTKL	NetMHCpan	129.8	140.9	1.086	155	0.045	265.96	259.604	0.976	308.71	298.44	140.9	129.8	354.0870144	363.1700284	210.4989821	233.4801695	PW1829T7	-0.214285714	-0.214285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.051	155	64	1	0.015625	15qB1	chr15-3327923-103439122	5	4	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.334332486	sgMsh2 aCD4/8	autochthonous
chr11	113903085	113903085	G	A	ENSMUST00000041627.13	1	ENSMUSG00000041592	missense	R/C	98	Sdk2	ENSMUST00000041627.13:c.292C>T	ENSMUSP00000038972.7:p.Arg98Cys	H-2-Kb	9	9	3	IVCNRMGAL	IVRNRMGAL	SMMPMBEC	229.747	199.641	0.869	47	0.468	406.8	236.619	0.582	151.46	306.48	621.7	561.4	273.5961615	507.1191374	199.6411211	229.7470798	PW1829T7	0.228571429	0.671428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.491	47	0	0	NA	11qE2	chr11-69590981-121956809	4	3	1	0.648	4.247989236	POOR GOF (79.5%)	3	1	sgMsh2 aCD4/8	autochthonous
chr4	121148675	121148675	CT	C	ENSMUST00000056635.12	5	ENSMUSG00000049878	FS	K/X	1146	Rlf	ENSMUST00000056635.12:c.3437del	ENSMUSP00000050825.5:p.Lys1146SerfsTer12	H-2-Kb	9	6	6	MHYLKSITI	MHYLKKHNY	NetMHCpan	311.5	3439.3	11.041	156	0.077	359.526	2218.787	6.171	6567.66	357.55	3439.3	311.5	714.6773197	361.5014137	998.2745515	482.2253089	PW1829T7	0.871428571	0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.079	156	38	6	0.157894737	4qD2.2	chr4-116816541-155946445	3	2	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.517887577	sgMsh2 aCD4/8	autochthonous
chr2	86423023	86423023	A	G	ENSMUST00000217481.1	5	ENSMUSG00000090059	missense	Y/H	218	Olfr1062	ENSMUST00000217481.1:c.652T>C	ENSMUSP00000149742.1:p.Tyr218His	H-2-Kb	9	7	5	VLISHFNIV	VLISYFNIV	SMM	244.968	196.386	0.802	292	0.062	323.466	202.588	0.626	208.79	358.58	138.4	332.7	196.3857628	244.968363	250.1785091	314.2317036	PW1829T7	1.214285714	1.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.065	292	0	0	NA	2qD	chr2-34176466-150118344	5	4	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.426110031	sgMsh2 aCD4/8	autochthonous
chr1	128274909	128274909	AT	A	ENSMUST00000027592.5	1	ENSMUSG00000026353	FS	N/X	429	Ubxn4	ENSMUST00000027592.5:c.1292del	ENSMUSP00000027592.3:p.Leu431TyrfsTer55	H-2-Kb	9	14	0	LAILLLHRL	NA	NetMHCpan	309.1	NA	NA	118	0.076	390.752	NA	NA	NA	370.25	NA	309.1	NA	411.2538721	NA	421.9393213	PW1829T7	1.714285714	2.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.066	118	267	21	0.078651685	1qE3	chr1-4867294-193194439	4	3	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.43266557	sgMsh2 aCD4/8	autochthonous
chr1	128274909	128274909	AT	A	ENSMUST00000027592.5	1	ENSMUSG00000026353	FS	N/X	429	Ubxn4	ENSMUST00000027592.5:c.1292del	ENSMUSP00000027592.3:p.Leu431TyrfsTer55	H-2-Kb	9	8	6	LISNFYLAI	LISNFLFSN	NetMHCpan	167	19416.3	116.265	118	0.076	405.69	10760.619	26.524	15166.32	376.62	19416.3	167	6354.918716	505.9527957	4048.088513	434.7604204	PW1829T7	1.042857143	1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.066	118	267	21	0.078651685	1qE3	chr1-4867294-193194439	4	3	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.43266557	sgMsh2 aCD4/8	autochthonous
chr5	103849526	103849526	C	T	ENSMUST00000031256.5	5	ENSMUSG00000029313	missense	T/M	1170	Aff1	ENSMUST00000031256.5:c.3509C>T	ENSMUSP00000031256.5:p.Thr1170Met	H-2-Kb	9	3	9	VTITSHVLM	VTITSHVLT	NetMHCpan	327.3	5142.7	15.712	68	0.088	379.507	3140.385	8.275	4275.79	379.48	5142.7	327.3	2004.979793	456.1524376	1406.857143	379.5333991	PW1829T7	1.385714286	1.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.087	68	28	1	0.035714286	5qE5	chr5-3582301-110893400	5	3	2	0.648	4.247989236	POOR GOF (79.5%)	1	0.570331888	sgMsh2 aCD4/8	autochthonous
chr2	160967898	160967898	C	T	ENSMUST00000039782.13	1	ENSMUSG00000057133	missense	R/H	1481	Chd6	ENSMUST00000039782.13:c.4442G>A	ENSMUSP00000042291.7:p.Arg1481His	H-2-Kb	9	8	4	TQFHIISRL	TQFRIISRL	NetMHCpan	167.1	97.8	0.585	171	0.105	481.836	453.879	0.942	239.03	393.18	97.8	167.1	796.3610307	709.7575157	668.728758	570.4925797	PW1829T7	1.014285714	1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.096	171	10	0	0	2qH2	chr2-150119227-181573140	4	3	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.629331739	sgMsh2 aCD4/8	autochthonous
chr2	59815382	59815382	GC	G	ENSMUST00000037526.10	5	ENSMUSG00000035168	FS	A/X	933	Tanc1	ENSMUST00000037526.10:c.2802del	ENSMUSP00000036003.4:p.Ile935SerfsTer32	H-2-Kb	9	25	0	LSLSFWNLA	NA	SMM	385.576	NA	NA	112	0.339	434.218	NA	NA	NA	393.92	NA	681.5	NA	385.5760057	NA	474.5150595	PW1829T7	1	1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.339	112	11	1	0.090909091	2qC1.1	chr2-34176466-150118344	5	4	1	0.648	4.247989236	POOR GOF (79.5%)	2	1	sgMsh2 aCD4/8	autochthonous
chr3	96651783	96651783	TG	T	ENSMUST00000119365.7	1	ENSMUSG00000090210	FS	W/X	396	Itga10	ENSMUST00000119365.7:c.1193del	ENSMUSP00000112393.1:p.Gly398AlafsTer68	H-2-Kb	9	41	0	TMRPTWVTL	NA	SMM	414.105	NA	NA	162	0.117	452.55	NA	NA	NA	431.7	NA	473.4	NA	414.1045477	NA	500.3224609	PW1829T7	-0.057142857	-0.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.115	162	1	0	0	3qF2.1	chr3-5397880-159913826	6	3	3	0.648	4.247989236	POOR GOF (79.5%)	1	0.753886979	sgMsh2 aCD4/8	autochthonous
chr14	16818776	16818776	AG	A	ENSMUST00000223976.1	NA	ENSMUSG00000017491	FS	P/X	31	Rarb	ENSMUST00000223976.1:c.92del	ENSMUSP00000153519.1:p.Pro31LeufsTer54	H-2-Kb	9	21	0	SMGSMATHL	NA	SMM	289.808	NA	NA	81	0.074	475.346	NA	NA	NA	466.24	NA	999.4	NA	289.8077532	NA	484.4511598	PW1829T7	0.342857143	0.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.077	81	0	0	NA	14qA2	chr14-3072210-57276279	5	4	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.504776499	sgMsh2 aCD4/8	autochthonous
chr2	36640346	36640346	AT	A	ENSMUST00000076850.1	NA	ENSMUSG00000059251	FS	Y/X	102	Olfr345	ENSMUST00000076850.1:c.312del	ENSMUSP00000076122.1:p.Phe104LeufsTer33	H-2-Kb	9	21	0	AFFLHQWPM	NA	SMM	226.522	NA	NA	364	0.239	289.104	NA	NA	NA	484.93	NA	345.8	NA	226.5217979	NA	232.4074256	PW1829T7	-0.1	0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.238	364	0	0	NA	2qB	chr2-34176466-150118344	5	4	1	0.648	4.247989236	POOR GOF (79.5%)	2	1	sgMsh2 aCD4/8	autochthonous
chr6	111359051	111359051	AT	A	ENSMUST00000071076.12	5	ENSMUSG00000056755	FS	F/X	808	Grm7	ENSMUST00000071076.12:c.2427del	ENSMUSP00000064404.6:p.Phe809LeufsTer21	H-2-Kb	8	21	0	STYKPPRL	NA	NetMHC	46.8	NA	NA	103	0.087	69.968	NA	NA	NA	46.8	NA	77.6	NA	62.33615346	NA	81.60936526	PW1829T7	-1.4	-1.4	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0874	103	0	0	NA	6qE3	chr6-3494310-113068119	4	3	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.572954104	sgMsh2 aCD4/8	autochthonous
chr7	51574860	51574860	AT	A	ENSMUST00000043944.5	1	ENSMUSG00000055489	FS	N/X	521	Ano5	ENSMUST00000043944.5:c.1570del	ENSMUSP00000046884.5:p.Tyr524MetfsTer26	H-2-Kb	8	31	0	RSMRAASL	NA	NetMHC	52.59	NA	NA	86	0.244	128.744	NA	NA	NA	52.59	NA	135.1	NA	150.2242346	NA	122.3883275	PW1829T7	0.457142857	0.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2442	86	0	0	NA	7qB4	chr7-4571705-143618290	3	2	1	0.648	4.247989236	POOR GOF (79.5%)	1	1	sgMsh2 aCD4/8	autochthonous
chr9	38449187	38449187	TG	T	ENSMUST00000213105.1	5	ENSMUSG00000049334	FS	C/X	105	Olfr902	ENSMUST00000213105.1:c.314del	ENSMUSP00000151061.1:p.Cys105PhefsTer11	H-2-Kb	8	6	6	QLYFFFFL	QLYFFCFF	SMM	25.867	560.712	21.677	275	0.24	55.241	600.357	10.868	1082.4	75.83	599.9	115.7	560.7121928	25.86663888	600.8139392	34.65293309	PW1829T7	2.5	2.5	TRUE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.24	275	0	0	NA	9qA5.1	chr9-7130668-124127224	4	2	2	0.648	4.247989236	POOR GOF (79.5%)	1	1	sgMsh2 aCD4/8	autochthonous
chr6	41048412	41048412	G	T	ENSMUST00000103264.2	NA	ENSMUSG00000076463	missense	G/C	7	Trbv3	ENSMUST00000103264.2:c.19G>T	ENSMUSP00000100080.2:p.Gly7Cys	H-2-Kb	8	7	1	CWIIFSFL	GWIIFSFL	NetMHC	130.7	498.24	3.812	194	0.062	162.917	446.685	2.742	498.24	130.7	633.7	520.9	395.1299959	143.1330745	275.892567	182.7006111	PW1829T7	2.385714286	2.385714286	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.068	194	0	0	NA	6qB1	chr6-3494310-113068119	4	3	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.445776648	sgMsh2 aCD4/8	autochthonous
chr9	38449187	38449187	TG	T	ENSMUST00000213105.1	5	ENSMUSG00000049334	FS	C/X	105	Olfr902	ENSMUST00000213105.1:c.314del	ENSMUSP00000151061.1:p.Cys105PhefsTer11	H-2-Kb	8	7	5	LYFFFFLL	LYFFCFFV	SMMPMBEC	43.525	1320.505	30.339	275	0.24	95.145	1780.366	18.712	1980.43	141.79	3560	149.6	1580.301673	48.49980584	1320.504848	43.52512229	PW1829T7	2.5	2.5	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.24	275	0	0	NA	9qA5.1	chr9-7130668-124127224	4	2	2	0.648	4.247989236	POOR GOF (79.5%)	1	1	sgMsh2 aCD4/8	autochthonous
chr7	5486431	5486431	CA	C	ENSMUST00000086297.7	5	ENSMUSG00000066820	FS	W/X	470	Vmn2r28	ENSMUST00000086297.7:c.1408del	ENSMUSP00000083477.5:p.Trp470GlyfsTer11	H-2-Kb	8	12	0	ISHNTLGL	NA	SMMPMBEC	314.586	NA	NA	218	0.17	408.849	NA	NA	NA	449.79	NA	468.5	NA	367.908651	NA	314.5864409	PW1829T7	-0.142857143	-0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.173	218	0	0	NA	7qA1	chr7-4571705-143618290	3	2	1	0.648	4.247989236	POOR GOF (79.5%)	1	1	sgMsh2 aCD4/8	autochthonous
chr9	38449187	38449187	TG	T	ENSMUST00000213105.1	5	ENSMUSG00000049334	FS	C/X	105	Olfr902	ENSMUST00000213105.1:c.314del	ENSMUSP00000151061.1:p.Cys105PhefsTer11	H-2-Kb	8	8	4	YFFFFLLF	YFFCFFVV	SMMPMBEC	317.497	109.079	0.344	275	0.24	412.807	320.389	0.776	531.7	496.96	1663.2	1730	85.65249141	328.6548155	109.0787117	317.4972734	PW1829T7	3.085714286	3.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.24	275	0	0	NA	9qA5.1	chr9-7130668-124127224	4	2	2	0.648	4.247989236	POOR GOF (79.5%)	1	1	sgMsh2 aCD4/8	autochthonous
chr8	107368660	107368660	AT	A	ENSMUST00000169453.7	5	ENSMUSG00000003847	FS	F/X	1178	Nfat5	ENSMUST00000169453.7:c.3537del	ENSMUSP00000127784.1:p.Phe1179LeufsTer78	H-2-Kb	8	55	0	LSKGYFSL	NA	NetMHCpan	160.4	NA	NA	120	0.067	283.446	NA	NA	NA	542.4	NA	160.4	NA	320.4350395	NA	246.456343	PW1829T7	-0.085714286	-0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.078	120	36	5	0.138888889	8qD3	chr8-3153818-128493272	4	2	2	0.648	4.247989236	POOR GOF (79.5%)	1	0.511332038	sgMsh2 aCD4/8	autochthonous
chrX	107292907	107292907	C	A	ENSMUST00000118820.7	1	ENSMUSG00000073008	missense	F/L	108	Gpr174	ENSMUST00000118820.7:c.324C>A	ENSMUSP00000113032.1:p.Phe108Leu	H-2-Kb	8	8	4	SIYLLVCI	SIYFLVCI	SMMPMBEC	336.31	404.334	1.202	143	0.112	441.93	405.735	0.918	817.38	555.03	343.1	521	407.1364636	362.8607551	404.3337559	336.3101696	PW1829T7	3.142857143	3.142857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.117	143	0	0	NA	XqD	NA	NA	NA	NA	0.648	4.247989236	POOR GOF (79.5%)	NA	NA	sgMsh2 aCD4/8	autochthonous
chr8	71684012	71684012	AG	A	ENSMUST00000051995.13	1	ENSMUSG00000031805	FS	E/X	654	Jak3	ENSMUST00000051995.13:c.1967del	ENSMUSP00000060073.7:p.Gly656ValfsTer10	H-2-Kb	8	13	1	VMGIHLSL	NA	NetMHCpan	418.4	NA	NA	65	0.092	495.285	NA	NA	NA	641.33	NA	418.4	NA	483.8825938	NA	506.6872779	PW1829T7	1.371428571	1.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.11	65	13	0	0	8qB3.3	chr8-3153818-128493272	4	2	2	0.648	4.247989236	POOR GOF (79.5%)	1	0.721109284	sgMsh2 aCD4/8	autochthonous
chr6	111359051	111359051	AT	A	ENSMUST00000071076.12	5	ENSMUSG00000056755	FS	F/X	808	Grm7	ENSMUST00000071076.12:c.2427del	ENSMUSP00000064404.6:p.Phe809LeufsTer21	H-2-Kb	8	5	8	LAFIPIFL	LAFIPIFF	SMM	383.478	6233.615	16.255	103	0.087	415.439	4926.82	11.859	4336.17	1091.03	2243	391.6	6233.615346	383.4775994	5517.470248	439.2785529	PW1829T7	2.657142857	2.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0874	103	0	0	NA	6qE3	chr6-3494310-113068119	4	3	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.572954104	sgMsh2 aCD4/8	autochthonous
chr8	107368660	107368660	AT	A	ENSMUST00000169453.7	5	ENSMUSG00000003847	FS	F/X	1178	Nfat5	ENSMUST00000169453.7:c.3537del	ENSMUSP00000127784.1:p.Phe1179LeufsTer78	H-2-Kb	8	9	4	ISFLQHRT	NA	SMMPMBEC	259.263	NA	NA	120	0.067	460.954	NA	NA	NA	1206.03	NA	618.7	NA	303.2075422	NA	259.2626764	PW1829T7	-0.871428571	-0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.078	120	36	5	0.138888889	8qD3	chr8-3153818-128493272	4	2	2	0.648	4.247989236	POOR GOF (79.5%)	1	0.511332038	sgMsh2 aCD4/8	autochthonous
chr9	38449187	38449187	TG	T	ENSMUST00000213105.1	5	ENSMUSG00000049334	FS	C/X	105	Olfr902	ENSMUST00000213105.1:c.314del	ENSMUSP00000151061.1:p.Cys105PhefsTer11	H-2-Kb	9	5	7	TQLYFFFFL	TQLYFFCFF	NetMHC	64.4	332.27	5.159	275	0.24	124.918	347.361	2.781	332.27	64.4	412.6	94.2	322.9311952	155.6359783	362.4515823	179.1636906	PW1829T7	2.5	2.5	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.24	275	0	0	NA	9qA5.1	chr9-7130668-124127224	4	2	2	0.648	4.247989236	POOR GOF (79.5%)	1	1	sgMsh2 aCD4/8	autochthonous
chr7	51574860	51574860	AT	A	ENSMUST00000043944.5	1	ENSMUSG00000055489	FS	N/X	521	Ano5	ENSMUST00000043944.5:c.1570del	ENSMUSP00000046884.5:p.Tyr524MetfsTer26	H-2-Kb	9	13	2	FMRRYLPGL	NA	NetMHC	66.92	NA	NA	86	0.244	115.403	NA	NA	NA	66.92	NA	112.2	NA	118.6069123	NA	168.3642965	PW1829T7	-0.671428571	-0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2442	86	0	0	NA	7qB4	chr7-4571705-143618290	3	2	1	0.648	4.247989236	POOR GOF (79.5%)	1	1	sgMsh2 aCD4/8	autochthonous
chrX	90892962	90892962	A	C	ENSMUST00000172155.1	NA	ENSMUSG00000091497	missense	K/T	274	Gm44	ENSMUST00000172155.1:c.821A>C	ENSMUSP00000129722.1:p.Lys274Thr	H-2-Kb	9	4	8	AILKFVATV	AILKFVAKV	NetMHC	67.08	88.77	1.323	53	0.094	355.268	383.017	1.078	88.77	67.08	171.4	110.4	787.2451613	621.0263106	594.6343592	600.1364431	PW1829T7	1.742857143	2.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.096	53	0	0	NA	XqC1	NA	NA	NA	NA	0.648	4.247989236	POOR GOF (79.5%)	NA	NA	sgMsh2 aCD4/8	autochthonous
chr9	38449187	38449187	TG	T	ENSMUST00000213105.1	5	ENSMUSG00000049334	FS	C/X	105	Olfr902	ENSMUST00000213105.1:c.314del	ENSMUSP00000151061.1:p.Cys105PhefsTer11	H-2-Kb	9	6	6	QLYFFFFLL	QLYFFCFFV	SMM	33.351	458.258	13.74	275	0.24	60.246	657.156	10.908	725.13	68.82	2713.3	98.9	458.2579416	33.35108752	589.1827186	51.6713728	PW1829T7	2.5	2.5	TRUE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.24	275	0	0	NA	9qA5.1	chr9-7130668-124127224	4	2	2	0.648	4.247989236	POOR GOF (79.5%)	1	1	sgMsh2 aCD4/8	autochthonous
chr7	51574860	51574860	AT	A	ENSMUST00000043944.5	1	ENSMUSG00000055489	FS	N/X	521	Ano5	ENSMUST00000043944.5:c.1570del	ENSMUSP00000046884.5:p.Tyr524MetfsTer26	H-2-Kb	9	10	5	LNFFMRRYL	NA	NetMHCpan	28.6	NA	NA	86	0.244	131.613	NA	NA	NA	84.12	NA	28.6	NA	179.1059444	NA	202.8850284	PW1829T7	0.142857143	0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2442	86	0	0	NA	7qB4	chr7-4571705-143618290	3	2	1	0.648	4.247989236	POOR GOF (79.5%)	1	1	sgMsh2 aCD4/8	autochthonous
chrX	107292907	107292907	C	A	ENSMUST00000118820.7	1	ENSMUSG00000073008	missense	F/L	108	Gpr174	ENSMUST00000118820.7:c.324C>A	ENSMUSP00000113032.1:p.Phe108Leu	H-2-Kb	9	3	9	VNMYASIYL	VNMYASIYF	NetMHCpan	94.6	563.9	5.961	143	0.112	150.421	450.182	2.993	356.8	120.91	563.9	94.6	303.4659719	179.9326599	543.5631415	314.2317036	PW1829T7	1.228571429	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.117	143	0	0	NA	XqD	NA	NA	NA	NA	0.648	4.247989236	POOR GOF (79.5%)	NA	NA	sgMsh2 aCD4/8	autochthonous
chrX	89930981	89930981	A	G	ENSMUST00000088146.2	1	ENSMUSG00000035387	missense	Y/H	537	4930415L06Rik	ENSMUST00000088146.2:c.1609T>C	ENSMUSP00000085471.2:p.Tyr537His	H-2-Kb	9	5	7	SMYIKHHIF	SMYIKHYIF	SMM	71.963	54.089	0.752	103	0.136	103.73	78.298	0.755	85.27	135.64	129.9	122.1	54.08913049	71.96312263	71.32634994	85.35913393	PW1829T7	0.028571429	0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.151	103	0	0	NA	XqC1	NA	NA	NA	NA	0.648	4.247989236	POOR GOF (79.5%)	NA	NA	sgMsh2 aCD4/8	autochthonous
chr9	38449187	38449187	TG	T	ENSMUST00000213105.1	5	ENSMUSG00000049334	FS	C/X	105	Olfr902	ENSMUST00000213105.1:c.314del	ENSMUSP00000151061.1:p.Cys105PhefsTer11	H-2-Kb	9	11	1	FFLLFLNAL	NA	SMM	155.278	NA	NA	275	0.24	202.838	NA	NA	NA	163.99	NA	2084.2	NA	155.2780255	NA	241.6851686	PW1829T7	2.328571429	2.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.24	275	0	0	NA	9qA5.1	chr9-7130668-124127224	4	2	2	0.648	4.247989236	POOR GOF (79.5%)	1	1	sgMsh2 aCD4/8	autochthonous
chrX	89930981	89930981	A	G	ENSMUST00000088146.2	1	ENSMUSG00000035387	missense	Y/H	537	4930415L06Rik	ENSMUST00000088146.2:c.1609T>C	ENSMUSP00000085471.2:p.Tyr537His	H-2-Kb	9	9	3	KHHIFSNNL	KHYIFSNNL	NetMHC	172.8	12.57	0.073	103	0.136	382.885	55.565	0.145	12.57	172.8	22.8	263.3	88.33035991	502.4698412	137.4833165	746.8785726	PW1829T7	0.014285714	0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.151	103	0	0	NA	XqC1	NA	NA	NA	NA	0.648	4.247989236	POOR GOF (79.5%)	NA	NA	sgMsh2 aCD4/8	autochthonous
chr9	38449187	38449187	TG	T	ENSMUST00000213105.1	5	ENSMUSG00000049334	FS	C/X	105	Olfr902	ENSMUST00000213105.1:c.314del	ENSMUSP00000151061.1:p.Cys105PhefsTer11	H-2-Kb	9	7	5	LYFFFFLLF	LYFFCFFVV	SMM	40.005	366.53	9.162	275	0.24	144.928	786.64	5.428	1206.75	244.33	2963.6	1023	366.5303993	40.00460623	298.0231495	45.52500477	PW1829T7	3.085714286	3.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.24	275	0	0	NA	9qA5.1	chr9-7130668-124127224	4	2	2	0.648	4.247989236	POOR GOF (79.5%)	1	1	sgMsh2 aCD4/8	autochthonous
chr9	38449187	38449187	TG	T	ENSMUST00000213105.1	5	ENSMUSG00000049334	FS	C/X	105	Olfr902	ENSMUST00000213105.1:c.314del	ENSMUSP00000151061.1:p.Cys105PhefsTer11	H-2-Kb	9	8	4	YFFFFLLFL	NA	SMM	112.23	NA	NA	275	0.24	224.223	NA	NA	NA	310.01	NA	960	NA	112.230268	NA	138.4363053	PW1829T7	3.228571429	3.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.24	275	0	0	NA	9qA5.1	chr9-7130668-124127224	4	2	2	0.648	4.247989236	POOR GOF (79.5%)	1	1	sgMsh2 aCD4/8	autochthonous
chr8	107368660	107368660	AT	A	ENSMUST00000169453.7	5	ENSMUSG00000003847	FS	F/X	1178	Nfat5	ENSMUST00000169453.7:c.3537del	ENSMUSP00000127784.1:p.Phe1179LeufsTer78	H-2-Kb	9	19	0	LHFSQHQTL	NA	NetMHC	417.07	NA	NA	120	0.067	474.928	NA	NA	NA	417.07	NA	474.4	NA	475.4556362	NA	573.1258538	PW1829T7	-0.728571429	-0.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.078	120	36	5	0.138888889	8qD3	chr8-3153818-128493272	4	2	2	0.648	4.247989236	POOR GOF (79.5%)	1	0.511332038	sgMsh2 aCD4/8	autochthonous
chrX	107292907	107292907	C	A	ENSMUST00000118820.7	1	ENSMUSG00000073008	missense	F/L	108	Gpr174	ENSMUST00000118820.7:c.324C>A	ENSMUSP00000113032.1:p.Phe108Leu	H-2-Kb	9	4	8	NMYASIYLL	NMYASIYFL	NetMHCpan	329.8	411.8	1.249	143	0.112	435.779	811.825	1.863	1062.82	493.89	411.8	329.8	692.0062231	377.6678362	931.6440185	560.0799166	PW1829T7	1.5	1.5	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.117	143	0	0	NA	XqD	NA	NA	NA	NA	0.648	4.247989236	POOR GOF (79.5%)	NA	NA	sgMsh2 aCD4/8	autochthonous
chr5	34640976	34640976	C	T	ENSMUST00000041364.12	1	ENSMUSG00000036693	missense	C/Y	701	Nop14	ENSMUST00000041364.12:c.2102G>A	ENSMUSP00000038382.9:p.Cys701Tyr	H-2-Kb	8	11	1	YVLMYQAL	CVLMYQAL	NetMHC	20.64	36.68	1.777	94	0.053	58.379	68.87	1.18	36.68	20.64	40.3	39	97.44061133	80.48964279	120.1544888	77.75709016	PW2016T1	1.528571429	1.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.069	94	0	0	NA	5qB2	chr5-3673201-150478141	2	2	0	0.497	2	NON-ABERRANT	1	0.277665996	sgMsh2	colon
chr18	36975478	36975478	G	A	ENSMUST00000192631.1	1	ENSMUSG00000104318	missense	A/T	519	Pcdha7	ENSMUST00000192631.1:c.1555G>A	ENSMUSP00000142156.1:p.Ala519Thr	H-2-Kb	8	8	4	KVFTLQPL	KVFALQPL	NetMHCpan	35.9	41.7	1.162	465	0.041	61.432	64.844	1.056	43.64	38.58	41.7	35.9	86.04784535	84.28300279	94.78508415	86.44502416	PW2016T1	1.257142857	1.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.041	465	0	0	NA	18qB2	chr18-3325290-84947472	2	1	1	0.497	2	NON-ABERRANT	1	0.16498994	sgMsh2	colon
chr11	30842075	30842075	GT	G	ENSMUST00000041231.13	1	ENSMUSG00000040850	FS	R/X	1187	Psme4	ENSMUST00000041231.13:c.3567del	ENSMUSP00000045460.7:p.Phe1189LeufsTer27	H-2-Kb	8	16	0	ISTMMQLL	NA	NetMHC	206.22	NA	NA	231	0.056	324.103	NA	NA	NA	206.22	NA	278.6	NA	370.458872	NA	369.6068402	PW2016T1	0.914285714	1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.055	231	0	0	NA	11qA4	chr11-3133205-121956619	2	1	1	0.497	2	NON-ABERRANT	1	0.221327968	sgMsh2	colon
chr10	23961298	23961298	T	C	ENSMUST00000092660.1	NA	ENSMUSG00000069707	missense	F/L	269	Taar4	ENSMUST00000092660.1:c.805T>C	ENSMUSP00000090330.1:p.Phe269Leu	H-2-Kb	8	4	8	LSIVMGVL	LSIVMGVF	SMMPMBEC	370.459	4653.074	12.56	225	0.089	468.68	5672.122	12.102	6691.17	925.07	2118.3	455.7	7829.607656	481.6593553	4653.074435	370.458872	PW2016T1	2.485714286	2.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.095	225	0	0	NA	10qA4	chr10-5218416-130453386	2	1	1	0.497	2	NON-ABERRANT	1	0.382293763	sgMsh2	colon
chr17	38275383	38275383	AT	A	ENSMUST00000173841.2	2	ENSMUSG00000057443	FS	I/X	204	Olfr138	ENSMUST00000173841.2:c.615del	ENSMUSP00000133828.2:p.Phe205LeufsTer9	H-2-Kb	8	8	5	VVCILYLL	VVCIFILI	SMM	282.319	247.594	0.877	182	0.038	476.044	472.487	0.993	697.38	938.42	886.7	666.5	247.5939338	282.3189304	206.8902384	285.5880296	PW2016T1	3.042857143	3.1	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.045	182	0	0	NA	17qB1	chr17-3635190-90208269	2	2	0	0.497	2	NON-ABERRANT	1	0.181086519	sgMsh2	colon
chr4	103208078	103208078	A	C	ENSMUST00000183432.5	5	ENSMUSG00000028521	missense	M/R	202	Slc35d1	ENSMUST00000183432.5:c.605T>G	ENSMUSP00000138926.1:p.Met202Arg	H-2-Kb	8	6	7	LQLLHWRL	LQLLHWML	SMMPMBEC	397.869	797.517	2.004	155	0.052	485.153	851.009	1.754	1767.12	1520.36	904.5	570.6	742.5744462	399.7053856	797.5170931	397.8689062	PW2016T1	-0.1	-0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.057	155	0	0	NA	4qC6	chr4-5799947-155823524	2	1	1	0.497	2	NON-ABERRANT	1	0.229376258	sgMsh2	colon
chr2	111368995	111368995	A	G	ENSMUST00000216637.1	5	ENSMUSG00000109322	missense	D/G	121	Olfr1283	ENSMUST00000216637.1:c.362A>G	ENSMUSP00000150510.1:p.Asp121Gly	H-2-Kb	9	8	4	MAYGRYVAI	MAYDRYVAI	NetMHCpan	15.9	14.4	0.906	477	0.023	31.499	30.259	0.961	27.08	30.99	14.4	15.9	39.27443988	36.82222268	33.43874735	32.00737072	PW2016T1	0.428571429	0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.024	477	0	0	NA	2qE3	chr2-4925576-181511691	2	1	1	0.497	2	NON-ABERRANT	1	0.096579477	sgMsh2	colon
chr2	111368995	111368995	A	G	ENSMUST00000216637.1	5	ENSMUSG00000109322	missense	D/G	121	Olfr1283	ENSMUST00000216637.1:c.362A>G	ENSMUSP00000150510.1:p.Asp121Gly	H-2-Kb	9	6	6	VTMAYGRYV	VTMAYDRYV	NetMHC	141.54	136.31	0.963	477	0.023	464.854	436.694	0.939	136.31	141.54	330	154.8	543.3879457	800.0368662	546.072115	774.9077422	PW2016T1	0.057142857	0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.024	477	0	0	NA	2qE3	chr2-4925576-181511691	2	1	1	0.497	2	NON-ABERRANT	1	0.096579477	sgMsh2	colon
chr5	34640976	34640976	C	T	ENSMUST00000041364.12	1	ENSMUSG00000036693	missense	C/Y	701	Nop14	ENSMUST00000041364.12:c.2102G>A	ENSMUSP00000038382.9:p.Cys701Tyr	H-2-Kb	9	6	6	SLMKHYVLM	SLMKHCVLM	NetMHCpan	71.3	518.6	7.273	94	0.053	169.072	750.76	4.44	752.92	165.46	518.6	71.3	893.5317727	190.5943402	748.6003055	172.683165	PW2016T1	0.485714286	0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.069	94	0	0	NA	5qB2	chr5-3673201-150478141	2	2	0	0.497	2	NON-ABERRANT	1	0.277665996	sgMsh2	colon
chr5	34640976	34640976	C	T	ENSMUST00000041364.12	1	ENSMUSG00000036693	missense	C/Y	701	Nop14	ENSMUST00000041364.12:c.2102G>A	ENSMUSP00000038382.9:p.Cys701Tyr	H-2-Kb	9	5	7	LSLMKHYVL	LSLMKHCVL	NetMHCpan	236.9	306.4	1.293	94	0.053	294.899	340.47	1.155	374.54	296.54	306.4	236.9	451.9704069	398.2080176	301.4740949	293.2580889	PW2016T1	0.757142857	0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.069	94	0	0	NA	5qB2	chr5-3673201-150478141	2	2	0	0.497	2	NON-ABERRANT	1	0.277665996	sgMsh2	colon
chr17	38275383	38275383	AT	A	ENSMUST00000173841.2	2	ENSMUSG00000057443	FS	I/X	204	Olfr138	ENSMUST00000173841.2:c.615del	ENSMUSP00000133828.2:p.Phe205LeufsTer9	H-2-Kb	9	9	4	VCILYLLFL	NA	SMMPMBEC	174.683	NA	NA	182	0.038	416.412	NA	NA	NA	590.66	NA	1225.2	NA	242.1642333	NA	174.6827418	PW2016T1	3.028571429	3.042857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.045	182	0	0	NA	17qB1	chr17-3635190-90208269	2	2	0	0.497	2	NON-ABERRANT	1	0.181086519	sgMsh2	colon
chr16	19624222	19624222	G	A	ENSMUST00000079891.3	NA	ENSMUSG00000060480	missense	R/W	294	Olfr171	ENSMUST00000079891.3:c.880C>T	ENSMUSP00000078814.3:p.Arg294Trp	H-2-Db	9	8	4	YSFWNKDVL	YSFRNKDVL	NetMHCpan	6.8	4.6	0.676	431	0.072	25.069	17.771	0.709	6.53	10.09	4.6	6.8	33.93282364	51.00585125	29.01148771	40.04700113	PW2017T1	-0.142857143	-0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.075	431	0	0	NA	16qA3	chr16-4687471-96819699	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.204359673	sgMsh2	colon
chr11	97670305	97670305	TC	T	ENSMUST00000044730.11	1	ENSMUSG00000038437	FS	S/X	273	Mllt6	ENSMUST00000044730.11:c.825del	ENSMUSP00000045445.5:p.Ser276AlafsTer47	H-2-Db	9	15	0	SSPRLRFPL	NA	NetMHC	91.2	NA	NA	92	0.098	237.678	NA	NA	NA	91.2	NA	230.1	NA	245.2562028	NA	327.0167515	PW2017T1	-0.257142857	-0.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0978	92	0	0	NA	11qD	chr11-3133205-121580267	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.266485014	sgMsh2	colon
chr10	4374600	4374600	T	C	ENSMUST00000100078.9	1	ENSMUSG00000075327	missense	Y/C	48	Zbtb2	ENSMUST00000100078.9:c.143A>G	ENSMUSP00000097656.2:p.Tyr48Cys	H-2-Db	9	6	6	ASFSNCFKM	ASFSNYFKM	NetMHCpan	82	31	0.378	268	0.026	117.703	51.594	0.438	31.14	128.84	31	82	72.04767988	106.5663277	86.81004873	134.4528462	PW2017T1	0.257142857	0.685714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.03	268	0	0	NA	10qA1	NA	NA	NA	NA	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	NA	NA	sgMsh2	colon
chr12	65136811	65136811	AT	A	ENSMUST00000052201.8	1	ENSMUSG00000047534	FS	N/X	929	Mis18bp1	ENSMUST00000052201.8:c.2786del	ENSMUSP00000052109.8:p.Asn929MetfsTer41	H-2-Db	9	10	2	KMLKNMARV	NA	NetMHC	130.04	NA	NA	77	0.117	208.01	NA	NA	NA	130.04	NA	343.1	NA	190.8182902	NA	225.2008368	PW2017T1	-0.028571429	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.118	77	0	0	NA	12qC1	chr12-3236683-118301289	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.321525886	sgMsh2	colon
chr15	81640124	81640124	GC	G	ENSMUST00000068387.10	1	ENSMUSG00000055024	FS	C/X	1384	Ep300	ENSMUST00000068387.10:c.4157del	ENSMUSP00000066789.4:p.Pro1386LeufsTer32	H-2-Db	9	29	0	SSVLNACGL	NA	NetMHCpan	100.9	NA	NA	162	0.056	220.626	NA	NA	NA	157.74	NA	100.9	NA	327.8083411	NA	283.5110563	PW2017T1	1.742857143	1.742857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.066	162	0	0	NA	15qE1	chr15-3280572-103525164	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.179836512	sgMsh2	colon
chr13	21786960	21786960	C	T	ENSMUST00000091751.2	NA	ENSMUSG00000069309	missense	A/T	87	Hist1h2an	ENSMUST00000091751.2:c.259G>A	ENSMUSP00000089345.2:p.Ala87Thr	H-2-Db	9	10	2	LTIRNDEEL	LAIRNDEEL	NetMHCpan	73	12	0.164	180	0.022	167.391	21.195	0.127	12.22	162.37	12	73	31.52245257	204.9368233	30.16963111	172.4129966	PW2017T1	-1.457142857	-1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.028	180	0	0	NA	13qA3.1	chr13-4065516-119495179	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.076294278	sgMsh2	colon
chr10	24902131	24902131	G	T	ENSMUST00000092646.12	1	ENSMUSG00000019984	missense	Q/H	792	Med23	ENSMUST00000092646.12:c.2376G>T	ENSMUSP00000090316.6:p.Gln792His	H-2-Db	9	8	4	FSVHGFPPL	FSVQGFPPL	NetMHC	329.54	119.7	0.363	56	0.071	472.899	288.45	0.61	119.7	329.54	161.4	396.8	468.4033581	637.7052612	415.4990164	548.9970363	PW2017T1	0.571428571	0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.076	56	0	0	NA	10qA4	chr10-4403017-130453386	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.207084469	sgMsh2	colon
chr1	131756678	131756678	CA	C	ENSMUST00000049027.9	1	ENSMUSG00000042268	FS	P/X	304	Slc26a9	ENSMUST00000049027.9:c.918del	ENSMUSP00000036916.3:p.Lys306AsnfsTer64	H-2-Db	9	64	0	ASMAMMWIL	NA	NetMHCpan	318.8	NA	NA	167	0.084	413.089	NA	NA	NA	826.68	NA	318.8	NA	483.7489106	NA	342.4285761	PW2017T1	2.128571429	2.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.082	167	0	0	NA	1qE4	chr1-4839315-194959842	2	2	0	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.223433243	sgMsh2	colon
chr10	26271445	26271445	GT	G	ENSMUST00000060716.5	5	ENSMUSG00000051354	FS	V/X	408	Samd3	ENSMUST00000060716.5:c.1227del	ENSMUSP00000057805.5:p.Phe409LeufsTer11	H-2-Kb	8	14	1	MSPAFLSL	NA	NetMHC	11.45	NA	NA	233	0.034	23.63	NA	NA	NA	11.45	NA	16.8	NA	30.46070846	NA	39.33145385	PW2017T1	1.285714286	1.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.04	233	0	0	NA	10qA4	chr10-4403017-130453386	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.108991826	sgMsh2	colon
chr11	73888081	73888081	G	A	ENSMUST00000216608.1	5	ENSMUSG00000056921	missense	A/V	97	Olfr394	ENSMUST00000216608.1:c.290C>T	ENSMUSP00000149527.1:p.Ala97Val	H-2-Kb	8	11	1	VQIFFFML	AQIFFFML	SMM	20.977	79.021	3.767	350	0.034	22.315	79.4	3.558	79.78	21.04	65.4	23.6	79.02054124	20.97683683	80.8611661	23.59065504	PW2017T1	2.157142857	2.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.037	350	0	0	NA	11qB4	chr11-3133205-121580267	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.100817439	sgMsh2	colon
chr10	24902131	24902131	G	T	ENSMUST00000092646.12	1	ENSMUSG00000019984	missense	Q/H	792	Med23	ENSMUST00000092646.12:c.2376G>T	ENSMUSP00000090316.6:p.Gln792His	H-2-Kb	8	9	3	SVHGFPPL	SVQGFPPL	NetMHC	21.49	33.72	1.569	56	0.071	47.941	70.743	1.476	33.72	21.49	62.1	29.7	79.38528349	69.30107956	96.99291239	66.18201718	PW2017T1	0.571428571	0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.076	56	0	0	NA	10qA4	chr10-4403017-130453386	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.207084469	sgMsh2	colon
chr13	65152523	65152523	CT	C	ENSMUST00000214214.1	5	ENSMUSG00000049806	FS	F/X	100	Olfr466	ENSMUST00000214214.1:c.305del	ENSMUSP00000149328.1:p.Leu102CysfsTer31	H-2-Kb	8	35	0	SVTLFYTL	NA	NetMHCpan	24	NA	NA	233	0.107	50.558	NA	NA	NA	27.03	NA	24	NA	74.08665723	NA	90.31086459	PW2017T1	1.7	1.7	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1073	233	0	0	NA	13qB3	chr13-4065516-119495179	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.292370572	sgMsh2	colon
chr1	157176143	157176143	AT	A	ENSMUST00000078308.12	1	ENSMUSG00000070565	FS	K/X	333	Rasal2	ENSMUST00000078308.12:c.999del	ENSMUSP00000077423.6:p.Lys333AsnfsTer62	H-2-Kb	8	52	0	SRFIFIRM	NA	NetMHC	75.18	NA	NA	137	0.131	87.666	NA	NA	NA	75.18	NA	135.1	NA	85.8499408	NA	89.4828896	PW2017T1	1.071428571	1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1314	137	0	0	NA	1qH1	chr1-4839315-194959842	2	2	0	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.358038147	sgMsh2	colon
chr17	23761107	23761107	C	T	ENSMUST00000045517.9	1	ENSMUSG00000040097	missense	R/Q	231	Flywch1	ENSMUST00000045517.9:c.692G>A	ENSMUSP00000040022.8:p.Arg231Gln	H-2-Kb	8	6	6	GVVRYQPL	GVVRYRPL	NetMHC	108.07	82.12	0.76	70	0.043	155.27	133.567	0.86	82.12	108.07	162	149.2	177.7215122	247.0244836	105.1332282	161.3392375	PW2017T1	0.185714286	0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.06	70	0	0	NA	17qA3.3	chr17-3170973-94747584	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.163487738	sgMsh2	colon
chr15	81640124	81640124	GC	G	ENSMUST00000068387.10	1	ENSMUSG00000055024	FS	C/X	1384	Ep300	ENSMUST00000068387.10:c.4157del	ENSMUSP00000066789.4:p.Pro1386LeufsTer32	H-2-Kb	8	25	0	IVFISSVL	NA	NetMHCpan	48.6	NA	NA	162	0.056	89.392	NA	NA	NA	132.75	NA	48.6	NA	84.86722465	NA	93.91608928	PW2017T1	2.557142857	2.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.066	162	0	0	NA	15qE1	chr15-3280572-103525164	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.179836512	sgMsh2	colon
chr12	65136811	65136811	AT	A	ENSMUST00000052201.8	1	ENSMUSG00000047534	FS	N/X	929	Mis18bp1	ENSMUST00000052201.8:c.2786del	ENSMUSP00000052109.8:p.Asn929MetfsTer41	H-2-Kb	8	20	0	VALSGATL	NA	NetMHC	159.63	NA	NA	77	0.117	201.021	NA	NA	NA	159.63	NA	234.2	NA	214.6545013	NA	187.3872337	PW2017T1	1.328571429	1.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.118	77	0	0	NA	12qC1	chr12-3236683-118301289	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.321525886	sgMsh2	colon
chr15	101039981	101039981	T	G	ENSMUST00000082209.12	5	ENSMUSG00000023033	missense	F/V	1744	Scn8a	ENSMUST00000082209.12:c.5230T>G	ENSMUSP00000080842.6:p.Phe1744Val	H-2-Kb	8	8	4	IFFVVSYI	IFFFVSYI	SMM	136.063	137.322	1.009	139	0.058	167.611	147.132	0.878	256.93	196.63	118.1	271	137.3219621	136.0629867	156.9422953	138.5925865	PW2017T1	2.342857143	2.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.061	139	0	0	NA	15qF1	chr15-3280572-103525164	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.166212534	sgMsh2	colon
chr17	26119521	26119521	G	A	ENSMUST00000025010.13	1	ENSMUSG00000024180	missense	C/Y	519	Tmem8	ENSMUST00000025010.13:c.1556G>A	ENSMUSP00000025010.7:p.Cys519Tyr	H-2-Kb	8	4	8	YGYVYAGY	YGYVYAGC	SMMPMBEC	139.232	79.385	0.57	89	0.067	228.142	66.968	0.294	42.53	206.4	56	267.1	77.93633877	249.8848923	79.38528349	139.2323008	PW2017T1	0.185714286	0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.063	89	0	0	NA	17qA3.3	chr17-3170973-94747584	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.171662125	sgMsh2	colon
chr10	129647805	129647805	C	T	ENSMUST00000214182.1	5	ENSMUSG00000094734	missense	P/S	226	Olfr799	ENSMUST00000214182.1:c.676C>T	ENSMUSP00000149485.1:p.Pro226Ser	H-2-Kb	8	6	6	TILRFSSA	TILRFPSA	NetMHC	209.82	523.68	2.496	224	0.018	256.311	463.542	1.809	523.68	209.82	598.9	496.6	403.403814	281.0217928	348.9313575	231.6007706	PW2017T1	0.971428571	0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.023	224	0	0	NA	10qD3	chr10-4403017-130453386	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.0626703	sgMsh2	colon
chr11	110146916	110146916	AG	A	ENSMUST00000044850.3	1	ENSMUSG00000041797	FS	P/X	536	Abca9	ENSMUST00000044850.3:c.1607del	ENSMUSP00000036338.3:p.Pro536LeufsTer51	H-2-Kb	8	44	0	YSLAFSPC	NA	SMM	141.821	NA	NA	145	0.041	196.163	NA	NA	NA	221.82	NA	349	NA	141.8208226	NA	170.5061311	PW2017T1	1.1	1.1	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.053	145	0	0	NA	11qE1	chr11-3133205-121580267	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.144414169	sgMsh2	colon
chr10	121611565	121611565	G	A	ENSMUST00000039810.7	5	ENSMUSG00000034667	missense	L/F	332	Xpot	ENSMUST00000039810.7:c.994C>T	ENSMUSP00000043488.7:p.Leu332Phe	H-2-Kb	8	9	3	VPFMLQLL	VPLMLQLL	SMM	155.146	648.246	4.178	200	0.025	231.397	1135.733	4.908	2023.69	292.68	1535.7	320.8	648.2462304	155.1457917	735.7664827	170.1139779	PW2017T1	1.571428571	1.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.028	200	0	0	NA	10qD2	chr10-4403017-130453386	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.076294278	sgMsh2	colon
chr13	65152523	65152523	CT	C	ENSMUST00000214214.1	5	ENSMUSG00000049806	FS	F/X	100	Olfr466	ENSMUST00000214214.1:c.305del	ENSMUSP00000149328.1:p.Leu102CysfsTer31	H-2-Kb	8	7	7	ATQFFFCL	ATQFFFLS	NetMHCpan	94.3	2885.6	30.6	233	0.107	122.788	2200.871	17.924	9273.36	294.89	2885.6	94.3	922.0192747	117.4194387	1516.142424	128.1563117	PW2017T1	1.5	1.5	FALSE	FALSE	FALSE	1	FALSE	0	Strelka2;Vardict	2	0.1073	233	0	0	NA	13qB3	chr13-4065516-119495179	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.292370572	sgMsh2	colon
chr13	65152523	65152523	CT	C	ENSMUST00000214214.1	5	ENSMUSG00000049806	FS	F/X	100	Olfr466	ENSMUST00000214214.1:c.305del	ENSMUSP00000149328.1:p.Leu102CysfsTer31	H-2-Kb	8	8	6	TQFFFCLF	TQFFFLSL	NetMHCpan	85.1	7.9	0.093	233	0.107	287.532	19.966	0.069	33.59	301.07	7.9	85.1	19.66708524	336.3101696	20.26469166	273.9933359	PW2017T1	2	2	FALSE	FALSE	FALSE	1	FALSE	0	Strelka2;Vardict	2	0.1073	233	0	0	NA	13qB3	chr13-4065516-119495179	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.292370572	sgMsh2	colon
chr1	71260985	71260985	C	G	ENSMUST00000087268.6	1	ENSMUSG00000050296	missense	R/S	2216	Abca12	ENSMUST00000087268.6:c.6648G>C	ENSMUSP00000084523.5:p.Arg2216Ser	H-2-Kb	8	10	2	LSLFFRKF	LRLFFRKF	NetMHCpan	150.3	3302.9	21.975	70	0.343	356.058	5260.566	14.774	4796.6	303.1	3302.9	150.3	8467.203545	596.6779652	5724.532166	409.0157201	PW2017T1	0.428571429	0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.334	70	0	0	NA	1qC3	chr1-4839315-194959842	2	2	0	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.910081744	sgMsh2	colon
chr17	49070407	49070407	T	C	ENSMUST00000046254.2	1	ENSMUSG00000040490	missense	M/T	172	Lrfn2	ENSMUST00000046254.2:c.515T>C	ENSMUSP00000047573.2:p.Met172Thr	H-2-Kb	8	7	5	SVRRTVNL	SVRRMVNL	NetMHC	314.07	68.89	0.219	181	0.044	334.003	138.3	0.414	68.89	314.07	189.6	661.3	131.1414557	331.6958211	145.4587999	336.3101696	PW2017T1	-0.142857143	-0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.055	181	0	0	NA	17qC	chr17-3170973-94747584	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.14986376	sgMsh2	colon
chr10	4374600	4374600	T	C	ENSMUST00000100078.9	1	ENSMUSG00000075327	missense	Y/C	48	Zbtb2	ENSMUST00000100078.9:c.143A>G	ENSMUSP00000097656.2:p.Tyr48Cys	H-2-Kb	8	8	4	FSNCFKML	FSNYFKML	SMM	128.748	122.67	0.953	268	0.026	240.407	117.323	0.488	92.01	339.32	113.1	364.5	122.6704617	128.7478543	121.5458122	141.4946437	PW2017T1	0.4	0.4	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.03	268	0	0	NA	10qA1	NA	NA	NA	NA	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	NA	NA	sgMsh2	colon
chr15	101202988	101202988	GA	G	ENSMUST00000000544.11	1	ENSMUSG00000000532	FS	K/X	344	Acvr1b	ENSMUST00000000544.11:c.1037del	ENSMUSP00000000544.9:p.Asn346MetfsTer22	H-2-Kb	8	24	0	LSVMMRSL	NA	NetMHCpan	266.6	NA	NA	91	0.22	394.323	NA	NA	NA	389.86	NA	266.6	NA	593.9364789	NA	398.7860888	PW2017T1	0.814285714	0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2198	91	0	0	NA	15qF1	chr15-3280572-103525164	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.598910082	sgMsh2	colon
chr11	95750134	95750134	GA	G	ENSMUST00000107717.7	5	ENSMUSG00000075595	FS	E/X	295	Zfp652	ENSMUST00000107717.7:c.890del	ENSMUSP00000103345.1:p.Asn297ThrfsTer107	H-2-Kb	8	12	2	KTFSVFPV	NA	NetMHCpan	139.9	NA	NA	140	0.05	164.034	NA	NA	NA	451.48	NA	139.9	NA	159.1255801	NA	168.9429215	PW2017T1	1.557142857	1.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.062	140	0	0	NA	11qD	chr11-3133205-121580267	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.16893733	sgMsh2	colon
chr1	157176143	157176143	AT	A	ENSMUST00000078308.12	1	ENSMUSG00000070565	FS	K/X	333	Rasal2	ENSMUST00000078308.12:c.999del	ENSMUSP00000077423.6:p.Lys333AsnfsTer62	H-2-Kb	8	50	0	IASRFIFI	NA	NetMHCpan	153.4	NA	NA	137	0.131	344.623	NA	NA	NA	465.86	NA	153.4	NA	352.1599796	NA	337.0854446	PW2017T1	1.585714286	1.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1314	137	0	0	NA	1qH1	chr1-4839315-194959842	2	2	0	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.358038147	sgMsh2	colon
chr1	157176143	157176143	AT	A	ENSMUST00000078308.12	1	ENSMUSG00000070565	FS	K/X	333	Rasal2	ENSMUST00000078308.12:c.999del	ENSMUSP00000077423.6:p.Lys333AsnfsTer62	H-2-Kb	8	12	0	ISANCALM	NA	SMM	449.511	NA	NA	137	0.131	490.213	NA	NA	NA	509.73	NA	582.7	NA	449.5106648	NA	470.6954498	PW2017T1	1.071428571	1.442857143	FALSE	FALSE	FALSE	1	FALSE	0	Strelka2;Vardict	2	0.1314	137	0	0	NA	1qH1	chr1-4839315-194959842	2	2	0	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.358038147	sgMsh2	colon
chr13	65152523	65152523	CT	C	ENSMUST00000214214.1	5	ENSMUSG00000049806	FS	F/X	100	Olfr466	ENSMUST00000214214.1:c.305del	ENSMUSP00000149328.1:p.Leu102CysfsTer31	H-2-Kb	8	31	0	ASLLSVTL	NA	SMM	359.534	NA	NA	233	0.107	416.657	NA	NA	NA	530.74	NA	440	NA	359.5340277	NA	393.3145385	PW2017T1	1.9	1.9	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1073	233	0	0	NA	13qB3	chr13-4065516-119495179	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.292370572	sgMsh2	colon
chr11	110146916	110146916	AG	A	ENSMUST00000044850.3	1	ENSMUSG00000041797	FS	P/X	536	Abca9	ENSMUST00000044850.3:c.1607del	ENSMUSP00000036338.3:p.Pro536LeufsTer51	H-2-Kb	8	19	0	ITRQFQRW	NA	SMM	96.325	NA	NA	145	0.041	370.986	NA	NA	NA	550.22	NA	3666.7	NA	96.32521787	NA	191.7520431	PW2017T1	-2.114285714	-1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.053	145	0	0	NA	11qE1	chr11-3133205-121580267	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.144414169	sgMsh2	colon
chr17	65867753	65867753	G	A	ENSMUST00000024905.10	1	ENSMUSG00000024096	missense	P/L	8	Ralbp1	ENSMUST00000024905.10:c.23C>T	ENSMUSP00000024905.9:p.Pro8Leu	H-2-Kb	8	1	8	MTECFLPL	MTECFLPP	SMMPMBEC	72.734	1886.861	25.942	47	0.17	199.278	8891.551	44.619	25239.16	599.38	15714.2	313.1	2068.902384	85.45549615	1886.8614	72.73442335	PW2017T1	1.014285714	1.014285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.174	47	0	0	NA	17qE1.1	chr17-3170973-94747584	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.474114441	sgMsh2	colon
chr16	19624222	19624222	G	A	ENSMUST00000079891.3	NA	ENSMUSG00000060480	missense	R/W	294	Olfr171	ENSMUST00000079891.3:c.880C>T	ENSMUSP00000078814.3:p.Arg294Trp	H-2-Kb	8	6	6	IIYSFWNK	IIYSFRNK	SMMPMBEC	18.999	11.769	0.619	431	0.072	362.084	33.582	0.093	53.08	702	604.9	756.6	14.08445349	22.16868845	11.76901185	18.99940498	PW2017T1	-0.442857143	0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.075	431	0	0	NA	16qA3	chr16-4687471-96819699	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.204359673	sgMsh2	colon
chr11	67660107	67660107	G	T	ENSMUST00000108682.8	1	ENSMUSG00000033066	missense	W/L	145	Gas7	ENSMUST00000108682.8:c.434G>T	ENSMUSP00000104322.2:p.Trp145Leu	H-2-Kb	8	4	8	WSYCDYFL	WSYCDYFW	SMM	166.625	1673.94	10.046	182	0.088	365.742	6024.138	16.471	10384.9	749.11	9172.6	559.4	1673.940435	166.6249377	2875.676312	172.0838049	PW2017T1	0.314285714	0.314285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.091	182	0	0	NA	11qB3	chr11-3133205-121580267	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.247956403	sgMsh2	colon
chr1	85818403	85818403	C	T	ENSMUST00000113360.7	1	ENSMUSG00000036707	missense	P/S	2	Cab39	ENSMUST00000113360.7:c.4C>T	ENSMUSP00000108987.1:p.Pro2Ser	H-2-Kb	8	1	2	MSFPFGKS	MPFPFGKS	SMM	89.277	592.57	6.637	84	0.06	250.425	4916.668	19.633	15261.46	787.78	8883.3	368.8	592.570463	89.27708467	950.0358634	132.0504848	PW2017T1	-0.271428571	0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.077	84	0	0	NA	1qC5	chr1-4839315-194959842	2	2	0	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.209809264	sgMsh2	colon
chr15	81640124	81640124	GC	G	ENSMUST00000068387.10	1	ENSMUSG00000055024	FS	C/X	1384	Ep300	ENSMUST00000068387.10:c.4157del	ENSMUSP00000066789.4:p.Pro1386LeufsTer32	H-2-Kb	9	23	0	TSIVFISSV	NA	NetMHC	30.9	NA	NA	162	0.056	136.254	NA	NA	NA	30.9	NA	36.4	NA	236.1076181	NA	253.0754397	PW2017T1	2.657142857	2.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.066	162	0	0	NA	15qE1	chr15-3280572-103525164	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.179836512	sgMsh2	colon
chr12	70056734	70056734	T	C	ENSMUST00000222237.1	5	ENSMUSG00000021068	missense	Y/C	244	Nin	ENSMUST00000222237.1:c.731A>G	ENSMUSP00000152240.1:p.Tyr244Cys	H-2-Kb	9	5	7	SVEDFFCGL	SVEDFFYGL	NetMHC	65.33	59.72	0.914	101	0.05	174.471	163.219	0.936	59.72	65.33	111.6	105.1	214.8374555	243.8428356	240.0214196	246.7459312	PW2017T1	0.642857143	0.7	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.066	101	0	0	NA	12qC2	chr12-3236683-118301289	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.179836512	sgMsh2	colon
chr11	97670305	97670305	TC	T	ENSMUST00000044730.11	1	ENSMUSG00000038437	FS	S/X	273	Mllt6	ENSMUST00000044730.11:c.825del	ENSMUSP00000045445.5:p.Ser276AlafsTer47	H-2-Kb	9	15	0	SSPRLRFPL	NA	NetMHC	74.2	NA	NA	92	0.098	328.916	NA	NA	NA	74.2	NA	121.9	NA	535.9323836	NA	676.4722721	PW2017T1	-0.257142857	-0.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0978	92	0	0	NA	11qD	chr11-3133205-121580267	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.266485014	sgMsh2	colon
chr11	73888081	73888081	G	A	ENSMUST00000216608.1	5	ENSMUSG00000056921	missense	A/V	97	Olfr394	ENSMUST00000216608.1:c.290C>T	ENSMUSP00000149527.1:p.Ala97Val	H-2-Kb	9	11	1	VQIFFFMLF	AQIFFFMLF	SMM	65.179	193.691	2.972	350	0.034	83.949	213.947	2.549	202.86	86.38	433	223.8	193.6912491	65.17934622	225.0349638	81.51734005	PW2017T1	3.057142857	3.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.037	350	0	0	NA	11qB4	chr11-3133205-121580267	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.100817439	sgMsh2	colon
chr1	174089408	174089408	T	C	ENSMUST00000216346.2	2	ENSMUSG00000049528	missense	Y/H	123	Olfr429	ENSMUST00000216346.2:c.367T>C	ENSMUSP00000149257.1:p.Tyr123His	H-2-Kb	9	6	6	MAYDRHLAI	MAYDRYLAI	NetMHCpan	43.9	14.8	0.337	135	0.037	105.131	34.154	0.325	30.53	89.69	14.8	43.9	39.82080176	139.3509712	37.77896015	120.5729815	PW2017T1	-0.342857143	-0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.049	135	0	0	NA	1qH3	chr1-4839315-194959842	2	2	0	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.133514986	sgMsh2	colon
chr16	64926560	64926560	C	T	ENSMUST00000063076.5	1	ENSMUSG00000050783	missense	R/H	123	Htr1f	ENSMUST00000063076.5:c.368G>A	ENSMUSP00000063136.4:p.Arg123His	H-2-Kb	9	5	7	IALDRYHAI	IALDRYRAI	NetMHCpan	78.1	92.4	1.183	202	0.04	99.563	106.348	1.068	54.28	90.67	92.4	78.1	140.6403699	133.0791444	120.2956713	108.4551052	PW2017T1	-0.342857143	-0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.043	202	0	0	NA	16qC1.3	chr16-4687471-96819699	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.117166213	sgMsh2	colon
chr11	73888081	73888081	G	A	ENSMUST00000216608.1	5	ENSMUSG00000056921	missense	A/V	97	Olfr394	ENSMUST00000216608.1:c.290C>T	ENSMUSP00000149527.1:p.Ala97Val	H-2-Kb	9	10	2	LVQIFFFML	LAQIFFFML	NetMHC	104.58	78.71	0.753	350	0.034	163.53	143.343	0.877	78.71	104.58	161.8	391.3	139.0304729	156.3543614	147.6556263	170.7064772	PW2017T1	2.157142857	2.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.037	350	0	0	NA	11qB4	chr11-3133205-121580267	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.100817439	sgMsh2	colon
chr1	174089408	174089408	T	C	ENSMUST00000216346.2	2	ENSMUSG00000049528	missense	Y/H	123	Olfr429	ENSMUST00000216346.2:c.367T>C	ENSMUSP00000149257.1:p.Tyr123His	H-2-Kb	9	4	8	TAMAYDRHL	TAMAYDRYL	NetMHC	109.85	118.84	1.082	135	0.037	287.93	309.569	1.075	118.84	109.85	204.9	197.2	442.7004873	424.7271271	414.2380608	378.6604965	PW2017T1	-0.714285714	-0.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.049	135	0	0	NA	1qH3	chr1-4839315-194959842	2	2	0	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.133514986	sgMsh2	colon
chr11	110146916	110146916	AG	A	ENSMUST00000044850.3	1	ENSMUSG00000041797	FS	P/X	536	Abca9	ENSMUST00000044850.3:c.1607del	ENSMUSP00000036338.3:p.Pro536LeufsTer51	H-2-Kb	9	21	0	RQFQRWTTL	NA	NetMHCpan	83.5	NA	NA	145	0.041	184.167	NA	NA	NA	115.84	NA	83.5	NA	315.5803838	NA	252.4933823	PW2017T1	-0.528571429	-0.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.053	145	0	0	NA	11qE1	chr11-3133205-121580267	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.144414169	sgMsh2	colon
chr13	65152523	65152523	CT	C	ENSMUST00000214214.1	5	ENSMUSG00000049806	FS	F/X	100	Olfr466	ENSMUST00000214214.1:c.305del	ENSMUSP00000149328.1:p.Leu102CysfsTer31	H-2-Kb	9	34	0	LSVTLFYTL	NA	NetMHCpan	82.5	NA	NA	233	0.107	230.548	NA	NA	NA	134.32	NA	82.5	NA	348.4255546	NA	326.7758854	PW2017T1	1.7	1.7	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1073	233	0	0	NA	13qB3	chr13-4065516-119495179	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.292370572	sgMsh2	colon
chr13	65152523	65152523	CT	C	ENSMUST00000214214.1	5	ENSMUSG00000049806	FS	F/X	100	Olfr466	ENSMUST00000214214.1:c.305del	ENSMUSP00000149328.1:p.Leu102CysfsTer31	H-2-Kb	9	8	6	TQFFFCLFL	TQFFFLSLF	NetMHCpan	73.9	70.8	0.958	233	0.107	171.422	93.163	0.543	83.97	144.12	70.8	73.9	102.3552209	227.567375	122.2503187	198.7238535	PW2017T1	3.042857143	3.042857143	FALSE	FALSE	FALSE	1	FALSE	0	Strelka2;Vardict	2	0.1073	233	0	0	NA	13qB3	chr13-4065516-119495179	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.292370572	sgMsh2	colon
chr10	24902131	24902131	G	T	ENSMUST00000092646.12	1	ENSMUSG00000019984	missense	Q/H	792	Med23	ENSMUST00000092646.12:c.2376G>T	ENSMUSP00000090316.6:p.Gln792His	H-2-Kb	9	8	4	FSVHGFPPL	FSVQGFPPL	NetMHCpan	133.9	147.7	1.103	56	0.071	222.023	244.152	1.1	145.28	158.78	147.7	133.9	405.6112574	336.5968133	340.6042008	285.2659918	PW2017T1	0.571428571	0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.076	56	0	0	NA	10qA4	chr10-4403017-130453386	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.207084469	sgMsh2	colon
chr15	18985149	18985149	GA	G	ENSMUST00000040562.13	1	ENSMUSG00000022321	FS	K/X	300	Cdh10	ENSMUST00000040562.13:c.902del	ENSMUSP00000042199.7:p.Asn301MetfsTer20	H-2-Kb	9	11	2	KMLKWITAL	NA	NetMHCpan	158.2	NA	NA	185	0.043	254.326	NA	NA	NA	209.35	NA	158.2	NA	299.3022626	NA	323.0353127	PW2017T1	1.2	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.035	185	0	0	NA	15qA2	chr15-3280572-103525164	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.095367847	sgMsh2	colon
chr11	119442475	119442475	CA	C	ENSMUST00000093902.11	5	ENSMUSG00000070327	FS	K/X	2838	Rnf213	ENSMUST00000093902.11:c.8517del	ENSMUSP00000091429.5:p.Val2840LeufsTer11	H-2-Kb	9	8	6	APYKKLALL	APYKKVGFV	NetMHC	216.34	7017.95	32.439	97	0.155	375.297	5038.683	13.426	7017.95	216.34	5536.8	550.4	4540.566075	354.0870144	3804.083139	396.5062159	PW2017T1	0.585714286	0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.17	97	0	0	NA	11qE2	chr11-3133205-121580267	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.463215259	sgMsh2	colon
chr12	65136811	65136811	AT	A	ENSMUST00000052201.8	1	ENSMUSG00000047534	FS	N/X	929	Mis18bp1	ENSMUST00000052201.8:c.2786del	ENSMUSP00000052109.8:p.Asn929MetfsTer41	H-2-Kb	9	4	8	YVYQMQKML	YVYQMQKNA	NetMHC	230.57	4147.66	17.989	77	0.117	314.225	3315.478	10.551	4147.66	230.57	3751.9	317.2	2698.422814	311.2504586	2879.055255	369.1900603	PW2017T1	-0.657142857	-0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.118	77	0	0	NA	12qC1	chr12-3236683-118301289	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.321525886	sgMsh2	colon
chr15	81640124	81640124	GC	G	ENSMUST00000068387.10	1	ENSMUSG00000055024	FS	C/X	1384	Ep300	ENSMUST00000068387.10:c.4157del	ENSMUSP00000066789.4:p.Pro1386LeufsTer32	H-2-Kb	9	17	0	GGYTYLTSI	NA	NetMHCpan	93.4	NA	NA	162	0.056	305.687	NA	NA	NA	235.32	NA	93.4	NA	488.776143	NA	376.053816	PW2017T1	0.5	0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.066	162	0	0	NA	15qE1	chr15-3280572-103525164	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.179836512	sgMsh2	colon
chr10	4374600	4374600	T	C	ENSMUST00000100078.9	1	ENSMUSG00000075327	missense	Y/C	48	Zbtb2	ENSMUST00000100078.9:c.143A>G	ENSMUSP00000097656.2:p.Tyr48Cys	H-2-Kb	9	6	6	ASFSNCFKM	ASFSNYFKM	NetMHCpan	199.9	32.6	0.163	268	0.026	316.575	62.946	0.199	47.71	266.62	32.6	199.9	78.18258038	366.5303993	84.96694433	368.3409467	PW2017T1	0.257142857	0.685714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.03	268	0	0	NA	10qA1	NA	NA	NA	NA	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	NA	NA	sgMsh2	colon
chr12	116233327	116233327	AT	A	ENSMUST00000039349.7	1	ENSMUSG00000042050	FS	N/X	470	Wdr60	ENSMUST00000039349.7:c.1409del	ENSMUSP00000047334.6:p.Asn470IlefsTer23	H-2-Kb	9	22	0	IMLRETFRL	NA	NetMHCpan	190.2	NA	NA	132	0.053	277.611	NA	NA	NA	273.96	NA	190.2	NA	281.2613131	NA	346.1385739	PW2017T1	-0.4	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.053	132	0	0	NA	12qF2	chr12-3236683-118301289	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.144414169	sgMsh2	colon
chr10	78917577	78917577	C	A	ENSMUST00000217073.2	2	ENSMUSG00000094673	missense	L/I	246	Olfr1354	ENSMUST00000217073.2:c.736C>A	ENSMUSP00000150374.1:p.Leu246Ile	H-2-Kb	9	8	4	VSHISIVSL	VSHLSIVSL	NetMHCpan	214.2	200.6	0.937	378	0.05	335.754	297.038	0.885	247.14	304.86	200.6	214.2	354.0870144	438.6417848	346.9365057	366.6485738	PW2017T1	1.742857143	1.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.055	378	0	0	NA	10qC1	chr10-4403017-130453386	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.14986376	sgMsh2	colon
chr1	157176143	157176143	AT	A	ENSMUST00000078308.12	1	ENSMUSG00000070565	FS	K/X	333	Rasal2	ENSMUST00000078308.12:c.999del	ENSMUSP00000077423.6:p.Lys333AsnfsTer62	H-2-Kb	9	38	0	VNILNSIAF	NA	NetMHC	306.36	NA	NA	137	0.131	402.272	NA	NA	NA	306.36	NA	921.5	NA	328.9349344	NA	475.6089297	PW2017T1	1.871428571	1.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1314	137	0	0	NA	1qH1	chr1-4839315-194959842	2	2	0	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.358038147	sgMsh2	colon
chr13	65152523	65152523	CT	C	ENSMUST00000214214.1	5	ENSMUSG00000049806	FS	F/X	100	Olfr466	ENSMUST00000214214.1:c.305del	ENSMUSP00000149328.1:p.Leu102CysfsTer31	H-2-Kb	9	7	7	ATQFFFCLF	ATQFFFLSL	NetMHCpan	246.4	24.4	0.099	233	0.107	314.89	147.145	0.467	82.82	337.29	24.4	246.4	215.332707	292.4893114	211.4706012	342.1763584	PW2017T1	2	2	FALSE	FALSE	FALSE	1	FALSE	0	Strelka2;Vardict	2	0.1073	233	0	0	NA	13qB3	chr13-4065516-119495179	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.292370572	sgMsh2	colon
chr11	97670305	97670305	TC	T	ENSMUST00000044730.11	1	ENSMUSG00000038437	FS	S/X	273	Mllt6	ENSMUST00000044730.11:c.825del	ENSMUSP00000045445.5:p.Ser276AlafsTer47	H-2-Kb	9	16	0	SPRLRFPLL	NA	NetMHC	350.36	NA	NA	92	0.098	444.435	NA	NA	NA	350.36	NA	1386.2	NA	373.3447082	NA	515.5253194	PW2017T1	0.514285714	0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0978	92	0	0	NA	11qD	chr11-3133205-121580267	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.266485014	sgMsh2	colon
chr2	86423404	86423404	GT	G	ENSMUST00000217481.1	5	ENSMUSG00000090059	FS	T/X	91	Olfr1062	ENSMUST00000217481.1:c.271del	ENSMUSP00000149742.1:p.Thr91ProfsTer27	H-2-Kb	9	24	0	FWFSWYQRS	NA	SMM	41.506	NA	NA	359	0.031	300.068	NA	NA	NA	484.99	NA	2050.3	NA	41.50591573	NA	115.1463034	PW2017T1	-1.285714286	-0.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.035	359	0	0	NA	2qD	chr2-4513773-181815659	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.095367847	sgMsh2	colon
chr1	157176143	157176143	AT	A	ENSMUST00000078308.12	1	ENSMUSG00000070565	FS	K/X	333	Rasal2	ENSMUST00000078308.12:c.999del	ENSMUSP00000077423.6:p.Lys333AsnfsTer62	H-2-Kb	9	51	0	ASRFIFIRM	NA	NetMHCpan	247.5	NA	NA	137	0.131	373.597	NA	NA	NA	514.59	NA	247.5	NA	385.5760057	NA	361.6179668	PW2017T1	1.071428571	1.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1314	137	0	0	NA	1qH1	chr1-4839315-194959842	2	2	0	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.358038147	sgMsh2	colon
chr17	23761107	23761107	C	T	ENSMUST00000045517.9	1	ENSMUSG00000040097	missense	R/Q	231	Flywch1	ENSMUST00000045517.9:c.692G>A	ENSMUSP00000040022.8:p.Arg231Gln	H-2-Kb	9	5	7	PGVVRYQPL	PGVVRYRPL	SMM	191.915	258.291	1.346	70	0.043	359.201	388.443	1.081	488.98	515.05	1565.2	1377.2	258.291432	191.9154771	287.9055255	203.3527266	PW2017T1	0.185714286	0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.06	70	0	0	NA	17qA3.3	chr17-3170973-94747584	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.163487738	sgMsh2	colon
chr2	48898564	48898564	TA	T	ENSMUST00000063886.3	1	ENSMUSG00000052155	FS	K/X	435	Acvr2a	ENSMUST00000063886.3:c.1310del	ENSMUSP00000067305.3:p.Lys437ArgfsTer5	H-2-Kb	9	8	6	VVHKKRGLF	VVHKKKRPV	SMM	417.936	621.026	1.486	179	0.084	493.429	698.682	1.416	685.74	546.05	4295.7	2279.7	621.0263106	417.9362099	711.6230389	440.8085403	PW2017T1	-1.328571429	-1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0838	179	0	0	NA	2qC1.1	chr2-4513773-181815659	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.228337875	sgMsh2	colon
chr1	174136920	174136920	A	G	ENSMUST00000214751.1	5	ENSMUSG00000051528	missense	M/V	59	Olfr424	ENSMUST00000214751.1:c.175A>G	ENSMUSP00000150840.1:p.Met59Val	H-2-Kb	9	10	2	PVYNFISIF	PMYNFISIF	SMM	154.565	71.303	0.461	392	0.033	405.613	255.078	0.629	396.85	580.95	579.3	798.9	71.30336075	154.5645878	113.3052413	230.2767015	PW2017T1	1.285714286	1.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.04	392	0	0	NA	1qH3	chr1-4839315-194959842	2	2	0	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.108991826	sgMsh2	colon
chr16	19624222	19624222	G	A	ENSMUST00000079891.3	NA	ENSMUSG00000060480	missense	R/W	294	Olfr171	ENSMUST00000079891.3:c.880C>T	ENSMUSP00000078814.3:p.Arg294Trp	H-2-Kb	9	6	6	IIYSFWNKD	IIYSFRNKD	SMM	78.183	185.828	2.377	431	0.072	372.05	782.503	2.103	1341.52	658.15	2850.7	1778.6	185.8275068	78.18258038	223.4858341	85.95081518	PW2017T1	-1.585714286	0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.075	431	0	0	NA	16qA3	chr16-4687471-96819699	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.204359673	sgMsh2	colon
chr1	157176143	157176143	AT	A	ENSMUST00000078308.12	1	ENSMUSG00000070565	FS	K/X	333	Rasal2	ENSMUST00000078308.12:c.999del	ENSMUSP00000077423.6:p.Lys333AsnfsTer62	H-2-Kb	9	44	0	IAFHLFIAS	NA	SMM	168.698	NA	NA	137	0.131	440.967	NA	NA	NA	1674.26	NA	656.9	NA	168.6980257	NA	225.0349638	PW2017T1	1.671428571	2.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1314	137	0	0	NA	1qH1	chr1-4839315-194959842	2	2	0	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.358038147	sgMsh2	colon
chr6	97176798	97176798	C	T	ENSMUST00000095664.5	1	ENSMUSG00000030059	missense	D/N	105	Tmf1	ENSMUST00000095664.5:c.313G>A	ENSMUSP00000093325.3:p.Asp105Asn	H-2-Db	9	7	5	LSPSNAHTI	LSPSDAHTI	NetMHC	9.79	639.98	65.371	179	0.034	52.704	1429.867	27.13	639.98	9.79	1425.5	31	1434.233955	74.40806316	1847.438543	99.44203427	PW2017T1	-0.5	-0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.038	179	0	0	NA	6qD3	chr6-3483595-149512217	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.103542234	sgMsh2	colon
chr9	58018273	58018273	C	T	ENSMUST00000034874.13	1	ENSMUSG00000032323	missense	P/S	166	Cyp11a1	ENSMUST00000034874.13:c.496C>T	ENSMUSP00000034874.7:p.Pro166Ser	H-2-Db	9	4	8	GAIKNFVSL	GAIKNFVPL	NetMHCpan	12.2	5	0.41	154	0.104	40.482	11.28	0.279	6.69	21.32	5	12.2	21.01938476	74.75151517	15.86974688	59.64444476	PW2017T1	1.014285714	1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.096	154	0	0	NA	9qB	chr9-3342997-124127224	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.261580381	sgMsh2	colon
chr4	128787064	128787064	TG	T	ENSMUST00000106072.8	5	ENSMUSG00000028799	FS	P/X	169	Zfp362	ENSMUST00000106072.8:c.506del	ENSMUSP00000101686.2:p.Pro169HisfsTer216	H-2-Db	9	168	0	SSLTSASTI	NA	NetMHC	44.47	NA	NA	81	0.049	230.463	NA	NA	NA	44.47	NA	220.7	NA	240.2259945	NA	270.7509568	PW2017T1	1.014285714	1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.065	81	0	0	NA	4qD2.2	chr4-3834436-156200568	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.177111717	sgMsh2	colon
chr2	88034600	88034600	CA	C	ENSMUST00000129056.2	2	ENSMUSG00000075140	FS	C/X	180	Olfr73	ENSMUST00000129056.2:c.538del	ENSMUSP00000149472.1:p.Cys180ValfsTer48	H-2-Db	9	3	9	FNMINHFFV	FNMINHFFC	NetMHCpan	23.3	2701.7	115.953	86	0.07	164.083	2276.805	13.876	3384.87	58.66	2701.7	23.3	1851.910525	275.1819856	1097.91824	269.5069691	PW2017T1	1.357142857	1.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.084	86	0	0	NA	2qD	chr2-4513773-181815659	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.228882834	sgMsh2	colon
chr7	86921459	86921459	C	T	ENSMUST00000170835.3	5	ENSMUSG00000091962	missense	S/F	395	Vmn2r78	ENSMUST00000170835.3:c.1184C>T	ENSMUSP00000126698.2:p.Ser395Phe	H-2-Db	9	6	6	YNLYNFVYA	YNLYNSVYA	NetMHC	156.4	309.81	1.981	396	0.051	284.947	440.649	1.546	309.81	156.4	333.5	208.8	547.7974421	361.0937737	581.5271559	376.3310048	PW2017T1	0.928571429	0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.045	396	0	0	NA	7qD3	chr7-4560606-143062472	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.122615804	sgMsh2	colon
chr4	128787064	128787064	TG	T	ENSMUST00000106072.8	5	ENSMUSG00000028799	FS	P/X	169	Zfp362	ENSMUST00000106072.8:c.506del	ENSMUSP00000101686.2:p.Pro169HisfsTer216	H-2-Db	9	178	0	TSPTNVPTA	NA	NetMHC	231.67	NA	NA	81	0.049	388.128	NA	NA	NA	231.67	NA	312.2	NA	499.5972049	NA	464.0555809	PW2017T1	-0.3	-0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.065	81	0	0	NA	4qD2.2	chr4-3834436-156200568	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.177111717	sgMsh2	colon
chrX	120637610	120637610	GA	G	ENSMUST00000113364.9	5	ENSMUSG00000034755	FS	K/X	1045	Pcdh11x	ENSMUST00000113364.9:c.3138del	ENSMUSP00000108991.4:p.Ala1047GlnfsTer75	H-2-Db	9	69	0	TALKGMATL	NA	SMMPMBEC	421.279	NA	NA	72	0.083	493.432	NA	NA	NA	558.15	NA	502	NA	484.864067	NA	421.2791835	PW2017T1	0.9	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.089	72	0	0	NA	XqE2	NA	NA	NA	NA	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	NA	NA	sgMsh2	colon
chr8	126025194	126025194	G	T	ENSMUST00000046765.9	1	ENSMUSG00000033998	missense	A/S	180	Kcnk1	ENSMUST00000046765.9:c.538G>T	ENSMUSP00000046103.8:p.Ala180Ser	H-2-Db	9	10	2	VSIVHAVLL	VAIVHAVLL	SMMPMBEC	421.279	250.94	0.596	68	0.074	479.289	256.7	0.536	257.4	575.53	256	468.1	297.591142	490.4785283	250.9400614	421.2791835	PW2017T1	2.728571429	2.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.08	68	0	0	NA	8qE2	chr8-3511896-126970168	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.217983651	sgMsh2	colon
chr2	88034600	88034600	CA	C	ENSMUST00000129056.2	2	ENSMUSG00000075140	FS	C/X	180	Olfr73	ENSMUST00000129056.2:c.538del	ENSMUSP00000149472.1:p.Cys180ValfsTer48	H-2-Kb	8	15	0	LSFHFHAL	NA	NetMHCpan	3.7	NA	NA	86	0.07	4.78	NA	NA	NA	4.23	NA	3.7	NA	5.89847849	NA	5.330156983	PW2017T1	0.571428571	0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.084	86	0	0	NA	2qD	chr2-4513773-181815659	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.228882834	sgMsh2	colon
chr8	126025194	126025194	G	T	ENSMUST00000046765.9	1	ENSMUSG00000033998	missense	A/S	180	Kcnk1	ENSMUST00000046765.9:c.538G>T	ENSMUSP00000046103.8:p.Ala180Ser	H-2-Kb	8	10	2	VSIVHAVL	VAIVHAVL	NetMHC	9.77	22.1	2.262	68	0.074	15.65	40.551	2.591	22.1	9.77	42.4	18.1	38.70258739	15.09176382	42.82920371	16.20839455	PW2017T1	2.071428571	2.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.08	68	0	0	NA	8qE2	chr8-3511896-126970168	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.217983651	sgMsh2	colon
chr3	159872977	159872977	TA	T	ENSMUST00000068952.9	1	ENSMUSG00000028173	FS	K/X	59	Wls	ENSMUST00000068952.9:c.178del	ENSMUSP00000067898.5:p.Thr60GlnfsTer44	H-2-Kb	8	44	0	FLYTFPSL	NA	NetMHC	14.65	NA	NA	173	0.035	20.174	NA	NA	NA	14.65	NA	17.4	NA	23.37437461	NA	22.94774419	PW2017T1	0.857142857	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.038	173	0	0	NA	3qH4	chr3-3642831-159911278	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.103542234	sgMsh2	colon
chr2	88034600	88034600	CA	C	ENSMUST00000129056.2	2	ENSMUSG00000075140	FS	C/X	180	Olfr73	ENSMUST00000129056.2:c.538del	ENSMUSP00000149472.1:p.Cys180ValfsTer48	H-2-Kb	8	27	0	VNCCFSFL	NA	SMM	17.248	NA	NA	86	0.07	20.893	NA	NA	NA	20.32	NA	44.8	NA	17.2480499	NA	21.46545013	PW2017T1	1.442857143	1.5	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Vardict	2	0.084	86	0	0	NA	2qD	chr2-4513773-181815659	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.228882834	sgMsh2	colon
chr7	27659090	27659090	GC	G	ENSMUST00000036453.13	1	ENSMUSG00000040390	FS	G/X	546	Map3k10	ENSMUST00000036453.13:c.1637del	ENSMUSP00000037725.7:p.Gly546AlafsTer123	H-2-Kb	8	102	0	LLLVFRRL	NA	NetMHCpan	44.5	NA	NA	66	0.076	54.102	NA	NA	NA	45.58	NA	44.5	NA	87.24489012	NA	62.62388407	PW2017T1	1.342857143	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0758	66	0	0	NA	7qA3	chr7-4560606-143062472	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.20653951	sgMsh2	colon
chr7	10100386	10100386	C	T	ENSMUST00000094863.5	5	ENSMUSG00000058685	missense	V/M	242	Vmn2r51	ENSMUST00000094863.5:c.724G>A	ENSMUSP00000092459.4:p.Val242Met	H-2-Kb	8	6	6	ICFAFMKM	ICFAFVKM	NetMHCpan	28.5	40.5	1.421	303	0.03	51.527	77.872	1.511	138.74	49.26	40.5	28.5	95.66211974	73.91626265	60.08139392	53.79476318	PW2017T1	1.4	1.771428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.036	303	0	0	NA	7qA1	chr7-4560606-143062472	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.098092643	sgMsh2	colon
chr2	88034600	88034600	CA	C	ENSMUST00000129056.2	2	ENSMUSG00000075140	FS	C/X	180	Olfr73	ENSMUST00000129056.2:c.538del	ENSMUSP00000149472.1:p.Cys180ValfsTer48	H-2-Kb	8	42	0	HSLSFSCL	NA	NetMHC	62.67	NA	NA	86	0.07	85.352	NA	NA	NA	62.67	NA	132.1	NA	96.10367602	NA	74.60020141	PW2017T1	1.5	1.5	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.084	86	0	0	NA	2qD	chr2-4513773-181815659	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.228882834	sgMsh2	colon
chr7	105619460	105619460	GC	G	ENSMUST00000057525.13	1	ENSMUSG00000036989	FS	A/X	96	Trim3	ENSMUST00000057525.13:c.286del	ENSMUSP00000053384.7:p.Ala96LeufsTer106	H-2-Kb	8	20	0	SAQWLAAL	NA	NetMHC	71.94	NA	NA	57	0.088	168.635	NA	NA	NA	71.94	NA	183.9	NA	153.3698525	NA	227.3735801	PW2017T1	1.228571429	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.085	57	0	0	NA	7qE3	chr7-4560606-143062472	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.231607629	sgMsh2	colon
chr2	88034600	88034600	CA	C	ENSMUST00000129056.2	2	ENSMUSG00000075140	FS	C/X	180	Olfr73	ENSMUST00000129056.2:c.538del	ENSMUSP00000149472.1:p.Cys180ValfsTer48	H-2-Kb	8	29	0	CCFSFLPL	NA	SMMPMBEC	45.892	NA	NA	86	0.07	51.069	NA	NA	NA	126.59	NA	51	NA	51.13755976	NA	45.89231861	PW2017T1	1.9	1.9	TRUE	FALSE	FALSE	2	FALSE	0	Mutect2;Vardict	2	0.084	86	0	0	NA	2qD	chr2-4513773-181815659	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.228882834	sgMsh2	colon
chr3	123112894	123112894	AG	A	ENSMUST00000106426.7	1	ENSMUSG00000050315	FS	P/X	924	Synpo2	ENSMUST00000106426.7:c.2772del	ENSMUSP00000102034.1:p.Ser925LeufsTer34	H-2-Kb	8	5	8	YNPIHSPL	YNPIHSPS	NetMHC	132.12	16845.31	127.5	164	0.055	227.278	8727.198	38.399	16845.31	132.12	12626.7	267.6	2475.939338	186.956255	4827.696948	267.7564861	PW2017T1	-0.342857143	-0.342857143	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Vardict	2	0.058	164	0	0	NA	3qG1	chr3-3642831-159911278	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.158038147	sgMsh2	colon
chr2	111754341	111754341	AT	A	ENSMUST00000207590.3	2	ENSMUSG00000057149	FS	F/X	31	Olfr1301	ENSMUST00000207590.3:c.95del	ENSMUSP00000146530.1:p.Leu32TrpfsTer17	H-2-Kb	8	17	0	SFYLEILL	NA	NetMHC	155.45	NA	NA	191	0.058	157.668	NA	NA	NA	155.45	NA	286.9	NA	158.3944645	NA	156.9422953	PW2017T1	1.985714286	1.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.061	191	0	0	NA	2qE3	chr2-4513773-181815659	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.166212534	sgMsh2	colon
chr8	84264328	84264328	TG	T	ENSMUST00000098578.9	1	ENSMUSG00000004994	FS	P/X	13	Ccdc130	ENSMUST00000098578.9:c.38del	ENSMUSP00000096177.3:p.Pro13GlnfsTer77	H-2-Kb	8	61	0	SAWVCATM	NA	NetMHCpan	172.9	NA	NA	150	0.06	236.948	NA	NA	NA	177.59	NA	172.9	NA	411.8508816	NA	296.3056959	PW2017T1	1.514285714	1.514285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.054	150	0	0	NA	8qC2	chr8-3511896-126970168	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.147138965	sgMsh2	colon
chr7	86921459	86921459	C	T	ENSMUST00000170835.3	5	ENSMUSG00000091962	missense	S/F	395	Vmn2r78	ENSMUST00000170835.3:c.1184C>T	ENSMUSP00000126698.2:p.Ser395Phe	H-2-Kb	8	9	3	YNFVYAVA	YNSVYAVA	NetMHCpan	89.4	4076.4	45.597	396	0.051	140.033	4027.545	28.761	10141.39	181.69	4076.4	89.4	3978.689062	151.6142424	3449.371732	128.4517425	PW2017T1	1.428571429	1.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.045	396	0	0	NA	7qD3	chr7-4560606-143062472	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.122615804	sgMsh2	colon
chr9	58018273	58018273	C	T	ENSMUST00000034874.13	1	ENSMUSG00000032323	missense	P/S	166	Cyp11a1	ENSMUST00000034874.13:c.496C>T	ENSMUSP00000034874.7:p.Pro166Ser	H-2-Kb	8	5	7	AIKNFVSL	AIKNFVPL	NetMHCpan	122.3	82.1	0.671	154	0.104	177.696	81.574	0.459	75.88	215.24	82.1	122.3	89.89592386	185.6692572	81.04757034	169.7227266	PW2017T1	1.014285714	1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.096	154	0	0	NA	9qB	chr9-3342997-124127224	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.261580381	sgMsh2	colon
chr7	105619460	105619460	GC	G	ENSMUST00000057525.13	1	ENSMUSG00000036989	FS	A/X	96	Trim3	ENSMUST00000057525.13:c.286del	ENSMUSP00000053384.7:p.Ala96LeufsTer106	H-2-Kb	8	38	0	WSFTVRPV	NA	SMMPMBEC	136.377	NA	NA	57	0.088	183.217	NA	NA	NA	220.64	NA	307.7	NA	145.794117	NA	136.3766443	PW2017T1	0.514285714	0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.085	57	0	0	NA	7qE3	chr7-4560606-143062472	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.231607629	sgMsh2	colon
chr2	153399446	153399446	AG	A	ENSMUST00000109790.1	5	ENSMUSG00000042548	FS	G/X	640	Asxl1	ENSMUST00000109790.1:c.1925del	ENSMUSP00000105413.1:p.Gly642ValfsTer58	H-2-Kb	8	33	0	VVMVVRPV	NA	NetMHC	253.25	NA	NA	66	0.167	329.794	NA	NA	NA	253.25	NA	280.5	NA	467.4552051	NA	379.0879676	PW2017T1	1.8	1.8	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1667	66	0	0	NA	2qH1	chr2-4513773-181815659	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.454223433	sgMsh2	colon
chrX	120637610	120637610	GA	G	ENSMUST00000113364.9	5	ENSMUSG00000034755	FS	K/X	1045	Pcdh11x	ENSMUST00000113364.9:c.3138del	ENSMUSP00000108991.4:p.Ala1047GlnfsTer75	H-2-Kb	8	47	0	VHPMHCLL	NA	NetMHC	269.45	NA	NA	72	0.083	413.075	NA	NA	NA	269.45	NA	391.9	NA	434.2501729	NA	541.6765067	PW2017T1	0.571428571	0.628571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.089	72	0	0	NA	XqE2	NA	NA	NA	NA	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	NA	NA	sgMsh2	colon
chr2	153399446	153399446	AG	A	ENSMUST00000109790.1	5	ENSMUSG00000042548	FS	G/X	640	Asxl1	ENSMUST00000109790.1:c.1925del	ENSMUSP00000105413.1:p.Gly642ValfsTer58	H-2-Kb	8	36	0	VVRPVATL	NA	SMM	210.737	NA	NA	66	0.167	296.367	NA	NA	NA	295.06	NA	306	NA	210.7366151	NA	297.6733808	PW2017T1	1.028571429	1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1667	66	0	0	NA	2qH1	chr2-4513773-181815659	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.454223433	sgMsh2	colon
chr6	80021677	80021677	T	C	ENSMUST00000147663.7	1	ENSMUSG00000052581	missense	L/P	24	Lrrtm4	ENSMUST00000147663.7:c.71T>C	ENSMUSP00000117263.1:p.Leu24Pro	H-2-Kb	8	5	7	VLFPTLPL	VLFPTLLL	NetMHCpan	76.2	156.9	2.059	145	0.055	203.355	549.248	2.701	784.41	313.5	156.9	76.2	542.9252	204.9934573	555.5715525	201.7158386	PW2017T1	1.471428571	1.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.061	145	0	0	NA	6qC3	chr6-3483595-149512217	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.166212534	sgMsh2	colon
chr7	27659090	27659090	GC	G	ENSMUST00000036453.13	1	ENSMUSG00000040390	FS	G/X	546	Map3k10	ENSMUST00000036453.13:c.1637del	ENSMUSP00000037725.7:p.Gly546AlafsTer123	H-2-Kb	8	67	0	ASTRWKNL	NA	SMMPMBEC	190.871	NA	NA	66	0.076	271.699	NA	NA	NA	315.5	NA	752.8	NA	227.8977303	NA	190.8710225	PW2017T1	-1.5	-1.5	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0758	66	0	0	NA	7qA3	chr7-4560606-143062472	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.20653951	sgMsh2	colon
chr2	89097028	89097028	AT	A	ENSMUST00000213288.1	5	ENSMUSG00000101480	FS	M/X	300	Olfr1220	ENSMUST00000213288.1:c.898del	ENSMUSP00000150812.1:p.Met300CysfsTer18	H-2-Kb	8	20	0	ITIKILYL	NA	NetMHCpan	103.1	NA	NA	194	0.036	298.674	NA	NA	NA	320.82	NA	103.1	NA	359.5340277	NA	276.528565	PW2017T1	1.528571429	1.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.039	194	0	0	NA	2qE1	chr2-4513773-181815659	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.10626703	sgMsh2	colon
chr8	84264328	84264328	TG	T	ENSMUST00000098578.9	1	ENSMUSG00000004994	FS	P/X	13	Ccdc130	ENSMUST00000098578.9:c.38del	ENSMUSP00000096177.3:p.Pro13GlnfsTer77	H-2-Kb	8	36	0	SSHKASLL	NA	NetMHC	428.05	NA	NA	150	0.06	474.365	NA	NA	NA	428.05	NA	854.7	NA	454.715753	NA	494.0148455	PW2017T1	0.1	0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.054	150	0	0	NA	8qC2	chr8-3511896-126970168	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.147138965	sgMsh2	colon
chr2	88034600	88034600	CA	C	ENSMUST00000129056.2	2	ENSMUSG00000075140	FS	C/X	180	Olfr73	ENSMUST00000129056.2:c.538del	ENSMUSP00000149472.1:p.Cys180ValfsTer48	H-2-Kb	8	8	4	HFFVSSPL	NA	SMMPMBEC	205.466	NA	NA	86	0.07	323.123	NA	NA	NA	438.4	NA	650.6	NA	207.8452003	NA	205.466016	PW2017T1	1.485714286	1.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.084	86	0	0	NA	2qD	chr2-4513773-181815659	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.228882834	sgMsh2	colon
chr3	123112894	123112894	AG	A	ENSMUST00000106426.7	1	ENSMUSG00000050315	FS	P/X	924	Synpo2	ENSMUST00000106426.7:c.2772del	ENSMUSP00000102034.1:p.Ser925LeufsTer34	H-2-Kb	8	13	0	THWLLSSL	NA	NetMHCpan	317.9	NA	NA	164	0.055	377.448	NA	NA	NA	530.8	NA	317.9	NA	409.9585987	NA	344.9371732	PW2017T1	0.814285714	0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.058	164	0	0	NA	3qG1	chr3-3642831-159911278	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.158038147	sgMsh2	colon
chr8	71684012	71684012	AG	A	ENSMUST00000051995.13	1	ENSMUSG00000031805	FS	E/X	654	Jak3	ENSMUST00000051995.13:c.1967del	ENSMUSP00000060073.7:p.Gly656ValfsTer10	H-2-Kb	8	13	1	VMGIHLSL	NA	NetMHCpan	418.4	NA	NA	67	0.075	495.285	NA	NA	NA	641.33	NA	418.4	NA	483.8825938	NA	506.6872779	PW2017T1	1.371428571	1.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.088	67	0	0	NA	8qB3.3	chr8-3511896-126970168	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.239782016	sgMsh2	colon
chr3	126936668	126936668	G	A	ENSMUST00000182078.8	5	ENSMUSG00000032826	missense	R/C	3556	Ank2	ENSMUST00000182078.8:c.10666C>T	ENSMUSP00000138753.3:p.Arg3556Cys	H-2-Kb	8	9	3	MGCSYAEI	MGRSYAEI	SMMPMBEC	311.702	333.227	1.069	155	0.026	484.303	311.163	0.642	253.07	723.97	289.1	568.9	339.4220093	399.7053856	333.2268594	311.7022951	PW2017T1	0.4	0.4	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.035	155	0	0	NA	3qG2	chr3-3642831-159911278	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.095367847	sgMsh2	colon
chr3	117335459	117335459	C	T	ENSMUST00000061071.12	1	ENSMUSG00000044667	missense	A/T	120	Plppr4	ENSMUST00000061071.12:c.358G>A	ENSMUSP00000052306.8:p.Ala120Thr	H-2-Kb	8	10	2	ETIPFLML	EAIPFLML	NetMHCpan	465.8	486.4	1.044	194	0.052	494.592	773.223	1.563	1422.62	1540.84	486.4	465.8	759.871227	491.7450535	786.5747483	497.4391928	PW2017T1	2.071428571	2.071428571	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.058	194	0	0	NA	3qG1	chr3-3642831-159911278	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.158038147	sgMsh2	colon
chr2	88034600	88034600	CA	C	ENSMUST00000129056.2	2	ENSMUSG00000075140	FS	C/X	180	Olfr73	ENSMUST00000129056.2:c.538del	ENSMUSP00000149472.1:p.Cys180ValfsTer48	H-2-Kb	8	6	6	INHFFVSS	INHFFCEF	SMM	253.945	699.423	2.754	86	0.07	424.769	452.759	1.066	314.31	2213.12	91.5	504.6	699.4231455	253.9451951	591.2075887	344.9371732	PW2017T1	0.214285714	0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.084	86	0	0	NA	2qD	chr2-4513773-181815659	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.228882834	sgMsh2	colon
chr3	38455431	38455431	CA	C	ENSMUST00000094300.3	1	ENSMUSG00000044864	FS	L/X	6	Ankrd50	ENSMUST00000094300.3:c.17del	ENSMUSP00000091858.3:p.Leu6TrpfsTer66	H-2-Kb	9	30	0	VTWRWCGYL	NA	NetMHC	19.28	NA	NA	110	0.055	81.799	NA	NA	NA	19.28	NA	38.5	NA	160.3651519	NA	125.0978944	PW2017T1	-0.242857143	-0.1	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.064	110	0	0	NA	3qB	chr3-3642831-159911278	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.174386921	sgMsh2	colon
chr2	89170841	89170841	C	T	ENSMUST00000217054.1	5	ENSMUSG00000101918	missense	A/T	124	Olfr1225	ENSMUST00000217054.1:c.370G>A	ENSMUSP00000150915.1:p.Ala124Thr	H-2-Kb	9	4	8	MAYDRYVTI	MAYDRYVAI	NetMHCpan	15	14.4	0.96	353	0.025	33.983	30.259	0.89	27.08	31.97	14.4	15	39.27443988	41.69749833	33.43874735	35.99564831	PW2017T1	-0.371428571	-0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.03	353	0	0	NA	2qE1	chr2-4513773-181815659	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.081743869	sgMsh2	colon
chr8	126025194	126025194	G	T	ENSMUST00000046765.9	1	ENSMUSG00000033998	missense	A/S	180	Kcnk1	ENSMUST00000046765.9:c.538G>T	ENSMUSP00000046103.8:p.Ala180Ser	H-2-Kb	9	10	2	VSIVHAVLL	VAIVHAVLL	NetMHCpan	29.8	56.1	1.883	68	0.074	62.003	91.669	1.478	82.85	41.19	56.1	29.8	100.4870276	82.81518951	122.5321348	97.33073433	PW2017T1	2.728571429	2.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.08	68	0	0	NA	8qE2	chr8-3511896-126970168	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.217983651	sgMsh2	colon
chr2	88034600	88034600	CA	C	ENSMUST00000129056.2	2	ENSMUSG00000075140	FS	C/X	180	Olfr73	ENSMUST00000129056.2:c.538del	ENSMUSP00000149472.1:p.Cys180ValfsTer48	H-2-Kb	9	15	0	LSFHFHALT	NA	NetMHC	44.32	NA	NA	86	0.07	86.265	NA	NA	NA	44.32	NA	51.4	NA	151.3944658	NA	121.129521	PW2017T1	0.585714286	0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.084	86	0	0	NA	2qD	chr2-4513773-181815659	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.228882834	sgMsh2	colon
chrX	120637610	120637610	GA	G	ENSMUST00000113364.9	5	ENSMUSG00000034755	FS	K/X	1045	Pcdh11x	ENSMUST00000113364.9:c.3138del	ENSMUSP00000108991.4:p.Ala1047GlnfsTer75	H-2-Kb	9	20	0	SHFTYQKAL	NA	NetMHC	73.92	NA	NA	72	0.083	181.258	NA	NA	NA	73.92	NA	86.3	NA	280.61443	NA	276.216743	PW2017T1	-0.142857143	-0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.089	72	0	0	NA	XqE2	NA	NA	NA	NA	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	NA	NA	sgMsh2	colon
chr3	159872977	159872977	TA	T	ENSMUST00000068952.9	1	ENSMUSG00000028173	FS	K/X	59	Wls	ENSMUST00000068952.9:c.178del	ENSMUSP00000067898.5:p.Thr60GlnfsTer44	H-2-Kb	9	44	0	FLYTFPSLL	NA	NetMHCpan	44.4	NA	NA	173	0.035	140.497	NA	NA	NA	79.57	NA	44.4	NA	201.4234359	NA	247.8848587	PW2017T1	0.857142857	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.038	173	0	0	NA	3qH4	chr3-3642831-159911278	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.103542234	sgMsh2	colon
chr2	88034600	88034600	CA	C	ENSMUST00000129056.2	2	ENSMUSG00000075140	FS	C/X	180	Olfr73	ENSMUST00000129056.2:c.538del	ENSMUSP00000149472.1:p.Cys180ValfsTer48	H-2-Kb	9	29	0	CCFSFLPLL	NA	SMM	97.076	NA	NA	86	0.07	134.179	NA	NA	NA	120.02	NA	153.9	NA	97.07558134	NA	148.3371737	PW2017T1	2.085714286	2.085714286	TRUE	FALSE	FALSE	2	FALSE	0	Mutect2;Vardict	2	0.084	86	0	0	NA	2qD	chr2-4513773-181815659	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.228882834	sgMsh2	colon
chr7	10100386	10100386	C	T	ENSMUST00000094863.5	5	ENSMUSG00000058685	missense	V/M	242	Vmn2r51	ENSMUST00000094863.5:c.724G>A	ENSMUSP00000092459.4:p.Val242Met	H-2-Kb	9	8	4	FAFMKMISV	FAFVKMISV	NetMHC	150.37	163.3	1.086	303	0.03	234.055	268.571	1.147	163.3	150.37	248	183.5	289.1412139	340.4944207	298.0231495	284.6098982	PW2017T1	1.514285714	1.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.036	303	0	0	NA	7qA1	chr7-4560606-143062472	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.098092643	sgMsh2	colon
chr2	88034600	88034600	CA	C	ENSMUST00000129056.2	2	ENSMUSG00000075140	FS	C/X	180	Olfr73	ENSMUST00000129056.2:c.538del	ENSMUSP00000149472.1:p.Cys180ValfsTer48	H-2-Kb	9	42	0	HSLSFSCLM	NA	NetMHC	193.21	NA	NA	86	0.07	301.133	NA	NA	NA	193.21	NA	355.6	NA	246.6664026	NA	553.6687348	PW2017T1	1.885714286	1.885714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.084	86	0	0	NA	2qD	chr2-4513773-181815659	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.228882834	sgMsh2	colon
chr9	58018273	58018273	C	T	ENSMUST00000034874.13	1	ENSMUSG00000032323	missense	P/S	166	Cyp11a1	ENSMUST00000034874.13:c.496C>T	ENSMUSP00000034874.7:p.Pro166Ser	H-2-Kb	9	5	7	AIKNFVSLL	AIKNFVPLL	NetMHC	193.47	334.06	1.727	154	0.104	354.976	449.661	1.267	334.06	193.47	210.1	201.5	653.2960014	575.5857057	565.2622723	508.4520469	PW2017T1	0.914285714	1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.096	154	0	0	NA	9qB	chr9-3342997-124127224	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.261580381	sgMsh2	colon
chr2	111754341	111754341	AT	A	ENSMUST00000207590.3	2	ENSMUSG00000057149	FS	F/X	31	Olfr1301	ENSMUST00000207590.3:c.95del	ENSMUSP00000146530.1:p.Leu32TrpfsTer17	H-2-Kb	9	16	0	CSFYLEILL	NA	SMM	133.386	NA	NA	191	0.058	211.898	NA	NA	NA	200.31	NA	356.3	NA	133.3859235	NA	223.4858341	PW2017T1	1.985714286	1.985714286	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.061	191	0	0	NA	2qE3	chr2-4513773-181815659	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.166212534	sgMsh2	colon
chr2	88034600	88034600	CA	C	ENSMUST00000129056.2	2	ENSMUSG00000075140	FS	C/X	180	Olfr73	ENSMUST00000129056.2:c.538del	ENSMUSP00000149472.1:p.Cys180ValfsTer48	H-2-Kb	9	26	0	SVNCCFSFL	NA	NetMHC	207.75	NA	NA	86	0.07	430.901	NA	NA	NA	207.75	NA	371.9	NA	489.9028884	NA	509.6241499	PW2017T1	1.442857143	1.5	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Vardict	2	0.084	86	0	0	NA	2qD	chr2-4513773-181815659	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.228882834	sgMsh2	colon
chrX	120637610	120637610	GA	G	ENSMUST00000113364.9	5	ENSMUSG00000034755	FS	K/X	1045	Pcdh11x	ENSMUST00000113364.9:c.3138del	ENSMUSP00000108991.4:p.Ala1047GlnfsTer75	H-2-Kb	9	33	0	VMVDWETTM	NA	SMM	143.255	NA	NA	72	0.083	190.315	NA	NA	NA	209.53	NA	353.9	NA	143.2550696	NA	171.0999962	PW2017T1	-0.457142857	0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.089	72	0	0	NA	XqE2	NA	NA	NA	NA	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	NA	NA	sgMsh2	colon
chr2	88034600	88034600	CA	C	ENSMUST00000129056.2	2	ENSMUSG00000075140	FS	C/X	180	Olfr73	ENSMUST00000129056.2:c.538del	ENSMUSP00000149472.1:p.Cys180ValfsTer48	H-2-Kb	9	32	0	SFLPLLMRL	NA	NetMHC	230.08	NA	NA	86	0.07	390.746	NA	NA	NA	230.08	NA	268.5	NA	512.9913002	NA	656.5230826	PW2017T1	1.571428571	1.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.084	86	0	0	NA	2qD	chr2-4513773-181815659	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.228882834	sgMsh2	colon
chr3	159872977	159872977	TA	T	ENSMUST00000068952.9	1	ENSMUSG00000028173	FS	K/X	59	Wls	ENSMUST00000068952.9:c.178del	ENSMUSP00000067898.5:p.Thr60GlnfsTer44	H-2-Kb	9	43	0	CFLYTFPSL	NA	NetMHC	233.21	NA	NA	173	0.035	325.127	NA	NA	NA	233.21	NA	319.8	NA	330.4532291	NA	650.5040428	PW2017T1	0.857142857	1.185714286	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.038	173	0	0	NA	3qH4	chr3-3642831-159911278	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.103542234	sgMsh2	colon
chr2	111754341	111754341	AT	A	ENSMUST00000207590.3	2	ENSMUSG00000057149	FS	F/X	31	Olfr1301	ENSMUST00000207590.3:c.95del	ENSMUSP00000146530.1:p.Leu32TrpfsTer17	H-2-Kb	9	10	3	IFWWFICSF	NA	SMM	244.405	NA	NA	191	0.058	246.977	NA	NA	NA	249.47	NA	1583.5	NA	244.4049514	NA	244.4837509	PW2017T1	1.428571429	2.185714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.061	191	0	0	NA	2qE3	chr2-4513773-181815659	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.166212534	sgMsh2	colon
chr7	117634764	117634764	A	T	ENSMUST00000032892.6	1	ENSMUSG00000030657	missense	D/V	506	Xylt1	ENSMUST00000032892.6:c.1517A>T	ENSMUSP00000032892.5:p.Asp506Val	H-2-Kb	9	5	7	VAFSTDVLV	VAFSTDDLV	SMM	223.929	407.483	1.82	132	0.053	303.731	628.581	2.07	576	253.26	4952.6	1608.2	407.4834739	223.9288243	681.1613539	354.201177	PW2017T1	1.428571429	1.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.061	132	0	0	NA	7qF1	chr7-4560606-143062472	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.166212534	sgMsh2	colon
chr7	10100386	10100386	C	T	ENSMUST00000094863.5	5	ENSMUSG00000058685	missense	V/M	242	Vmn2r51	ENSMUST00000094863.5:c.724G>A	ENSMUSP00000092459.4:p.Val242Met	H-2-Kb	9	6	6	ICFAFMKMI	ICFAFVKMI	NetMHCpan	184.4	309.4	1.678	303	0.03	282.053	440.697	1.562	415.54	259.14	309.4	184.4	822.4509375	552.2172896	465.8541836	304.9650004	PW2017T1	1.685714286	1.771428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.036	303	0	0	NA	7qA1	chr7-4560606-143062472	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.098092643	sgMsh2	colon
chr5	145362087	145362087	TA	T	ENSMUST00000079268.8	5	ENSMUSG00000070419	FS	K/X	66	Cyp3a57	ENSMUST00000079268.8:c.201del	ENSMUSP00000078251.7:p.Lys67AsnfsTer29	H-2-Kb	9	11	2	KNMEKYGGF	NA	SMM	200.96	NA	NA	400	0.037	238.623	NA	NA	NA	268.68	NA	264.8	NA	200.9601749	NA	212.4467052	PW2017T1	-0.685714286	-0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.037	400	0	0	NA	5qG2	chr5-3673201-150478141	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.100817439	sgMsh2	colon
chr5	145362087	145362087	TA	T	ENSMUST00000079268.8	5	ENSMUSG00000070419	FS	K/X	66	Cyp3a57	ENSMUST00000079268.8:c.201del	ENSMUSP00000078251.7:p.Lys67AsnfsTer29	H-2-Kb	9	29	0	SWIQRSSKL	NA	SMM	136.808	NA	NA	400	0.037	234.323	NA	NA	NA	282.33	NA	611.6	NA	136.8075294	NA	186.3159349	PW2017T1	-0.742857143	-0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.037	400	0	0	NA	5qG2	chr5-3673201-150478141	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.100817439	sgMsh2	colon
chr7	86921459	86921459	C	T	ENSMUST00000170835.3	5	ENSMUSG00000091962	missense	S/F	395	Vmn2r78	ENSMUST00000170835.3:c.1184C>T	ENSMUSP00000126698.2:p.Ser395Phe	H-2-Kb	9	4	8	TCYNLYNFV	TCYNLYNSV	SMMPMBEC	216.895	160.048	0.738	396	0.051	315.983	179.855	0.569	171.91	289.9	187.8	383.9	255.3347944	342.0660715	160.0479073	216.8952295	PW2017T1	0.171428571	0.171428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.045	396	0	0	NA	7qD3	chr7-4560606-143062472	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.122615804	sgMsh2	colon
chr7	85565286	85565286	T	A	ENSMUST00000168230.2	5	ENSMUSG00000090806	missense	Q/H	219	Vmn2r70	ENSMUST00000168230.2:c.657A>T	ENSMUSP00000129703.1:p.Gln219His	H-2-Kb	9	8	4	HGIHFLSEL	HGIQFLSEL	NetMHCpan	163.3	196.5	1.203	380	0.032	404.309	444.686	1.1	265.48	290.88	196.5	163.3	623.8928378	517.7379503	743.4469772	622.6586131	PW2017T1	1.057142857	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.034	380	0	0	NA	7qD3	chr7-4560606-143062472	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.092643052	sgMsh2	colon
chr2	111754341	111754341	AT	A	ENSMUST00000207590.3	2	ENSMUSG00000057149	FS	F/X	31	Olfr1301	ENSMUST00000207590.3:c.95del	ENSMUSP00000146530.1:p.Leu32TrpfsTer17	H-2-Kb	9	12	1	WWFICSFYL	NA	SMM	178.694	NA	NA	191	0.058	308.245	NA	NA	NA	336.43	NA	3566.1	NA	178.6940122	NA	280.0593007	PW2017T1	2.042857143	2.042857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.061	191	0	0	NA	2qE3	chr2-4513773-181815659	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.166212534	sgMsh2	colon
chr3	20228867	20228867	T	A	ENSMUST00000001921.2	1	ENSMUSG00000001865	missense	M/L	139	Cpa3	ENSMUST00000001921.2:c.415A>T	ENSMUSP00000001921.1:p.Met139Leu	H-2-Kb	9	3	9	KMLEKHPEL	KMLEKHPEM	SMM	234.482	308.397	1.315	181	0.022	301.532	470.283	1.56	580.61	337.45	794.9	521.8	308.3968972	234.4822647	359.9564831	265.6134116	PW2017T1	-1.157142857	-1.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.032	181	0	0	NA	3qA2	chr3-3642831-159911278	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.08719346	sgMsh2	colon
chrX	120637610	120637610	GA	G	ENSMUST00000113364.9	5	ENSMUSG00000034755	FS	K/X	1045	Pcdh11x	ENSMUST00000113364.9:c.3138del	ENSMUSP00000108991.4:p.Ala1047GlnfsTer75	H-2-Kb	9	63	0	IMLHQTTAL	NA	SMM	268.602	NA	NA	72	0.083	314.467	NA	NA	NA	358.95	NA	335	NA	268.6024688	NA	293.9341186	PW2017T1	0.185714286	0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.089	72	0	0	NA	XqE2	NA	NA	NA	NA	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	NA	NA	sgMsh2	colon
chr3	159872977	159872977	TA	T	ENSMUST00000068952.9	1	ENSMUSG00000028173	FS	K/X	59	Wls	ENSMUST00000068952.9:c.178del	ENSMUSP00000067898.5:p.Thr60GlnfsTer44	H-2-Kb	9	40	0	MTLCFLYTF	NA	SMM	339.711	NA	NA	173	0.035	419.641	NA	NA	NA	378.76	NA	628.9	NA	339.7113053	NA	460.5215948	PW2017T1	1.957142857	1.957142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.038	173	0	0	NA	3qH4	chr3-3642831-159911278	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.103542234	sgMsh2	colon
chr8	84264328	84264328	TG	T	ENSMUST00000098578.9	1	ENSMUSG00000004994	FS	P/X	13	Ccdc130	ENSMUST00000098578.9:c.38del	ENSMUSP00000096177.3:p.Pro13GlnfsTer77	H-2-Kb	9	26	0	TATHFENGL	NA	SMM	335.823	NA	NA	150	0.06	402.957	NA	NA	NA	381.05	NA	1228.9	NA	335.8226621	NA	424.864065	PW2017T1	-0.671428571	-0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.054	150	0	0	NA	8qC2	chr8-3511896-126970168	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.147138965	sgMsh2	colon
chr5	134707871	134707871	AG	A	ENSMUST00000015138.12	1	ENSMUSG00000029675	FS	P/X	711	Eln	ENSMUST00000015138.12:c.2132del	ENSMUSP00000015138.9:p.Pro711LeufsTer86	H-2-Kb	9	8	4	AAPLLLPLL	NA	NetMHCpan	393.9	NA	NA	75	0.067	444.361	NA	NA	NA	405.54	NA	393.9	NA	483.1811688	NA	658.0365246	PW2017T1	2.257142857	2.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.069	75	0	0	NA	5qG2	chr5-3673201-150478141	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.188010899	sgMsh2	colon
chr2	88034600	88034600	CA	C	ENSMUST00000129056.2	2	ENSMUSG00000075140	FS	C/X	180	Olfr73	ENSMUST00000129056.2:c.538del	ENSMUSP00000149472.1:p.Cys180ValfsTer48	H-2-Kb	9	17	0	FHFHALTHL	NA	NetMHCpan	279.9	NA	NA	86	0.07	446.628	NA	NA	NA	417.8	NA	279.9	NA	475.4556362	NA	553.6687348	PW2017T1	0.728571429	0.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.084	86	0	0	NA	2qD	chr2-4513773-181815659	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.228882834	sgMsh2	colon
chr6	58307364	58307364	CT	C	ENSMUST00000226971.1	NA	ENSMUSG00000091734	FS	L/X	23	Vmn1r29	ENSMUST00000226971.1:c.74del	ENSMUSP00000154612.1:p.Phe25SerfsTer5	H-2-Kb	9	7	7	NMFLLFSIF	NMFLLFFYI	SMM	152.093	191.474	1.259	233	0.056	326.451	395.118	1.21	541.78	438.49	880.6	461.8	191.4740838	152.0932709	248.4562923	214.4124503	PW2017T1	2.814285714	2.814285714	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Vardict	2	0.063	233	0	0	NA	6qB3	chr6-3483595-149512217	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.171662125	sgMsh2	colon
chr2	111754341	111754341	AT	A	ENSMUST00000207590.3	2	ENSMUSG00000057149	FS	F/X	31	Olfr1301	ENSMUST00000207590.3:c.95del	ENSMUSP00000146530.1:p.Leu32TrpfsTer17	H-2-Kb	9	14	0	FICSFYLEI	NA	SMMPMBEC	290.569	NA	NA	191	0.058	380.02	NA	NA	NA	614.5	NA	466.2	NA	293.8393807	NA	290.5694826	PW2017T1	1.142857143	2.042857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.061	191	0	0	NA	2qE3	chr2-4513773-181815659	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.166212534	sgMsh2	colon
chr12	101044536	101044536	T	C	ENSMUST00000163095.8	5	ENSMUSG00000041846	missense	N/S	595	Ppp4r3a	ENSMUST00000163095.8:c.1784A>G	ENSMUSP00000129654.1:p.Asn595Ser	H-2-Db	9	10	2	YSLMNSAII	YNLMNSAII	NetMHCpan	4	17.8	4.45	201	0.07	17.385	106.902	6.149	27.35	4.67	17.8	4	202.1249847	30.1037085	186.4532681	30.10024288	PW2017T2	1.742857143	1.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.079	201	0	0	NA	12qE	chr12-3237715-119173220	2	1	1	0.613	2	NON-ABERRANT	1	0.257748777	sgMsh2	colon
chr11	29749886	29749886	C	T	ENSMUST00000058902.5	5	ENSMUSG00000044072	missense	G/E	1750	Eml6	ENSMUST00000058902.5:c.5249G>A	ENSMUSP00000051080.5:p.Gly1750Glu	H-2-Db	9	6	6	IGMKNEEFV	IGMKNGEFV	NetMHCpan	42.1	20.8	0.494	157	0.127	187.142	192.597	1.029	36.4	48.02	20.8	42.1	422.2989484	412.6862508	348.7947987	326.2646338	PW2017T2	-0.785714286	-0.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.127	157	0	0	NA	11qA3.3	chr11-3133205-121238400	2	1	1	0.613	2	NON-ABERRANT	1	0.414355628	sgMsh2	colon
chr15	34470706	34470706	C	T	ENSMUST00000060894.8	1	ENSMUSG00000044726	missense	S/F	27	Erich5	ENSMUST00000060894.8:c.80C>T	ENSMUSP00000058182.7:p.Ser27Phe	H-2-Db	9	6	6	TSNENFSTV	TSNENSSTV	NetMHCpan	78	222	2.846	165	0.133	104.477	208.75	1.998	185.25	78.15	222	78	198.4357879	130.8036913	219.0634888	141.7653192	PW2017T2	-0.714285714	-0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.14	165	0	0	NA	15qB3.1	chr15-3280572-103525164	2	1	1	0.613	2	NON-ABERRANT	1	0.456769984	sgMsh2	colon
chr12	52516795	52516795	CT	C	ENSMUST00000219443.1	5	ENSMUSG00000035133	FS	L/X	183	Arhgap5	ENSMUST00000219443.1:c.552del	ENSMUSP00000151809.1:p.Phe184LeufsTer11	H-2-Db	9	13	0	SSYQNPKSL	NA	SMM	170.852	NA	NA	262	0.027	211.862	NA	NA	NA	196.44	NA	233.5	NA	170.8519736	NA	227.2845945	PW2017T2	-1.542857143	-1.542857143	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Vardict	2	0.027	262	0	0	NA	12qC1	chr12-3237715-119173220	2	1	1	0.613	2	NON-ABERRANT	1	0.088091354	sgMsh2	colon
chr10	129541377	129541377	C	G	ENSMUST00000215436.1	5	ENSMUSG00000094496	missense	A/G	280	Olfr792	ENSMUST00000215436.1:c.839C>G	ENSMUSP00000149872.1:p.Ala280Gly	H-2-Db	11	3	9	IAVLNTSVGPM	IAVLNTSVAPM	NetMHC	83.87	73.54	0.877	202	0.153	174.088	130.749	0.751	73.54	83.87	69.7	100.4	187.9576472	247.776435	1071.173944	1241.252111	PW2017T2	-0.128571429	1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.137	202	0	0	NA	10qD3	chr10-4453448-130453386	2	1	1	0.613	2	NON-ABERRANT	1	0.446982055	sgMsh2	colon
chr11	106319989	106319989	C	T	ENSMUST00000021056.7	1	ENSMUSG00000001027	missense	R/H	1734	Scn4a	ENSMUST00000021056.7:c.5201G>A	ENSMUSP00000021056.7:p.Arg1734His	H-2-Kb	8	7	5	RAYRHHLL	RAYRRHLL	NetMHC	14.18	60.79	4.287	116	0.155	31.672	178.412	5.633	60.79	14.18	82.2	21.2	274.6249558	42.1444121	279.7306149	53.30156983	PW2017T2	-0.4	-0.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.179	116	0	0	NA	11qE1	chr11-3133205-121238400	2	1	1	0.613	2	NON-ABERRANT	1	0.584013051	sgMsh2	colon
chr12	30005832	30005832	G	A	ENSMUST00000122328.7	1	ENSMUSG00000020674	missense	R/H	1239	Pxdn	ENSMUST00000122328.7:c.3716G>A	ENSMUSP00000113703.1:p.Arg1239His	H-2-Kb	8	5	7	LSTQFRHL	LSTQFRRL	NetMHC	24.93	23.94	0.96	98	0.031	51.168	39.981	0.781	23.94	24.93	82.7	66.6	40.90157201	52.93464441	39.06069803	49.40148455	PW2017T2	-0.871428571	-0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.042	98	0	0	NA	12qA2	chr12-3237715-119173220	2	1	1	0.613	2	NON-ABERRANT	1	0.137030995	sgMsh2	colon
chr1	119567826	119567826	AT	A	ENSMUST00000052404.12	1	ENSMUSG00000026383	FS	N/X	587	Epb41l5	ENSMUST00000052404.12:c.1760del	ENSMUSP00000058966.6:p.Asn587MetfsTer40	H-2-Kb	8	10	2	KMPAFRML	NA	NetMHC	35.24	NA	NA	162	0.105	116.734	NA	NA	NA	35.24	NA	87	NA	146.4670721	NA	184.8161845	PW2017T2	0.871428571	0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.116	162	0	0	NA	1qE2.3	chr1-6233869-195062457	2	2	0	0.613	2	NON-ABERRANT	1	0.378466558	sgMsh2	colon
chr17	20846848	20846848	AT	A	ENSMUST00000232909.1	NA	ENSMUSG00000045417	FS	F/X	100	Vmn1r230	ENSMUST00000232909.1:c.303del	ENSMUSP00000156546.1:p.Phe101LeufsTer5	H-2-Kb	8	7	6	WSYQFLCM	WSYQFFMY	SMMPMBEC	38.348	103.452	2.698	211	0.062	43.299	241.361	5.574	305.41	41.75	1270.6	94.4	177.3127641	44.8476819	103.4522641	38.34775994	PW2017T2	0.771428571	0.771428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.059	211	0	0	NA	17qA3.2	chr17-3170973-94747584	2	1	1	0.613	2	NON-ABERRANT	1	0.192495922	sgMsh2	colon
chr16	37570405	37570405	AT	A	ENSMUST00000023524.12	1	ENSMUSG00000022827	FS	Y/X	208	Rabl3	ENSMUST00000023524.12:c.630del	ENSMUSP00000023524.6:p.Phe210LeufsTer21	H-2-Kb	8	16	0	VIRFRAFL	NA	NetMHCpan	81.3	NA	NA	257	0.047	106.641	NA	NA	NA	88.33	NA	81.3	NA	124.9510759	NA	151.9637493	PW2017T2	0.957142857	1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.044	257	0	0	NA	16qB3	chr16-3948854-97453880	2	1	1	0.613	2	NON-ABERRANT	1	0.143556281	sgMsh2	colon
chr1	192413109	192413109	G	A	ENSMUST00000078470.11	1	ENSMUSG00000058248	missense	V/I	519	Kcnh1	ENSMUST00000078470.11:c.1555G>A	ENSMUSP00000077563.5:p.Val519Ile	H-2-Kb	8	10	2	SIRDFLKL	SVRDFLKL	NetMHCpan	67.8	65.7	0.969	228	0.079	102.691	157.401	1.533	137.49	92.47	65.7	67.8	177.3127641	112.911974	205.466016	146.4670721	PW2017T2	0.428571429	0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.085	228	0	0	NA	1qH6	chr1-6233869-195062457	2	2	0	0.613	2	NON-ABERRANT	1	0.277324633	sgMsh2	colon
chr11	101337488	101337488	C	T	ENSMUST00000103105.9	1	ENSMUSG00000019326	missense	P/L	707	Aoc3	ENSMUST00000103105.9:c.2120C>T	ENSMUSP00000099394.3:p.Pro707Leu	H-2-Kb	8	4	8	SVGFFLRL	SVGFFLRP	NetMHCpan	26.7	8408.3	314.918	114	0.044	89.219	5346.265	59.923	12704.25	100.35	8408.3	26.7	2284.230889	94.34958625	2181.423563	84.08915726	PW2017T2	1.785714286	1.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.058	114	0	0	NA	11qD	chr11-3133205-121238400	2	1	1	0.613	2	NON-ABERRANT	1	0.189233279	sgMsh2	colon
chr1	80533880	80533880	C	A	ENSMUST00000077946.11	5	ENSMUSG00000038608	missense	R/M	1517	Dock10	ENSMUST00000077946.11:c.4550G>T	ENSMUSP00000077099.5:p.Arg1517Met	H-2-Kb	8	11	1	MVFDTYML	RVFDTYML	NetMHCpan	91.9	145.6	1.584	287	0.031	185.838	356.58	1.919	202.96	114.79	145.6	91.9	510.1994663	256.8857419	522.0835386	272.7344509	PW2017T2	1.028571429	1.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.031	287	0	0	NA	1qC5	chr1-6233869-195062457	2	2	0	0.613	2	NON-ABERRANT	1	0.101141925	sgMsh2	colon
chr13	70604808	70604808	G	T	ENSMUST00000043493.6	5	ENSMUSG00000034525	missense	A/D	1053	Ice1	ENSMUST00000043493.6:c.3158C>A	ENSMUSP00000036482.5:p.Ala1053Asp	H-2-Kb	8	11	1	DSYCYTGI	ASYCYTGI	NetMHC	126.8	6.43	0.051	75	0.04	166.553	20.009	0.12	6.43	126.8	7.9	195.5	34.09887101	160.228586	32.11737185	172.8781076	PW2017T2	0.357142857	0.357142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.053	75	0	0	NA	13qC1	chr13-3556909-119495179	2	1	1	0.613	2	NON-ABERRANT	1	0.172920065	sgMsh2	colon
chr16	44432147	44432147	AT	A	ENSMUST00000099742.8	5	ENSMUSG00000071550	FS	I/X	873	Cfap44	ENSMUST00000099742.8:c.2623del	ENSMUSP00000097331.2:p.Ser875LeufsTer49	H-2-Kb	8	8	6	VFDIFLNL	VFDIFSEF	SMM	34.733	1843.911	53.088	161	0.037	78.255	1804.446	23.058	1878.09	161.99	995.2	110.3	1843.91119	34.73281635	1764.980859	46.21042896	PW2017T2	1.528571429	1.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.044	161	0	0	NA	16qB4	chr16-3948854-97453880	2	1	1	0.613	2	NON-ABERRANT	1	0.143556281	sgMsh2	colon
chr16	37570405	37570405	AT	A	ENSMUST00000023524.12	1	ENSMUSG00000022827	FS	Y/X	208	Rabl3	ENSMUST00000023524.12:c.630del	ENSMUSP00000023524.6:p.Phe210LeufsTer21	H-2-Kb	8	15	0	KVIRFRAF	NA	NetMHCpan	165.7	NA	NA	257	0.047	276.908	NA	NA	NA	180.79	NA	165.7	NA	492.8786429	NA	373.0267702	PW2017T2	1.014285714	1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.044	257	0	0	NA	16qB3	chr16-3948854-97453880	2	1	1	0.613	2	NON-ABERRANT	1	0.143556281	sgMsh2	colon
chr17	45547054	45547054	C	T	ENSMUST00000180252.2	1	ENSMUSG00000096847	missense	A/T	89	Tmem151b	ENSMUST00000180252.2:c.265G>A	ENSMUSP00000136337.1:p.Ala89Thr	H-2-Kb	8	10	2	STYQGNSL	SAYQGNSL	SMMPMBEC	117.149	185.242	1.581	103	0.058	126.19	184.393	1.461	203.78	196.67	178.8	133.6	183.5439188	118.7790917	185.2422298	117.1493815	PW2017T2	-0.914285714	-0.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.063	103	0	0	NA	17qB3	chr17-3170973-94747584	2	1	1	0.613	2	NON-ABERRANT	1	0.205546493	sgMsh2	colon
chr17	64752541	64752541	G	A	ENSMUST00000086723.9	1	ENSMUSG00000024085	missense	S/N	1141	Man2a1	ENSMUST00000086723.9:c.3422G>A	ENSMUSP00000083928.3:p.Ser1141Asn	H-2-Kb	8	11	2	INTFRIRL	ISTFRIRL	NetMHCpan	74.9	61.9	0.826	167	0.03	480.921	255.856	0.532	158.74	306.09	61.9	74.9	354.6010359	655.752568	352.9717922	735.7664827	PW2017T2	-0.3	-0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.033	167	0	0	NA	17qE1.1	chr17-3170973-94747584	2	1	1	0.613	2	NON-ABERRANT	1	0.10766721	sgMsh2	colon
chr13	11568553	11568553	CA	C	ENSMUST00000021750.14	1	ENSMUSG00000021313	FS	F/X	4738	Ryr2	ENSMUST00000021750.14:c.14214del	ENSMUSP00000021750.7:p.Phe4738LeufsTer15	H-2-Kb	8	6	6	YNNFFLLL	YNNFFFAA	NetMHCpan	67.5	1163.6	17.239	116	0.198	193.6	1309.522	6.764	3518.33	308.38	1163.6	67.5	1255.278239	168.5543635	1363.766443	218.6452264	PW2017T2	1.428571429	1.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1983	116	0	0	NA	13qA1	chr13-3556909-119495179	2	1	1	0.613	2	NON-ABERRANT	1	0.646982055	sgMsh2	colon
chr15	103205499	103205499	CT	C	ENSMUST00000118152.7	1	ENSMUSG00000009575	FS	K/X	106	Cbx5	ENSMUST00000118152.7:c.317del	ENSMUSP00000113157.1:p.Lys106ArgfsTer31	H-2-Kb	8	15	0	AMISLGAL	NA	NetMHC	324.28	NA	NA	77	0.117	432.78	NA	NA	NA	324.28	NA	361.2	NA	522.0835386	NA	504.3592613	PW2017T2	2.085714286	2.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1169	77	0	0	NA	15qF3	chr15-3280572-103525164	2	1	1	0.613	2	NON-ABERRANT	1	0.381402936	sgMsh2	colon
chr10	40076663	40076663	CT	C	ENSMUST00000092566.7	1	ENSMUSG00000019838	FS	K/X	278	Slc16a10	ENSMUST00000092566.7:c.834del	ENSMUSP00000090227.6:p.Val279SerfsTer33	H-2-Kb	8	28	0	LGYHLHFL	NA	NetMHCpan	65.7	NA	NA	131	0.137	155.238	NA	NA	NA	336.89	NA	65.7	NA	160.597951	NA	149.8787285	PW2017T2	0.328571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.152	131	0	0	NA	10qB1	chr10-4453448-130453386	2	1	1	0.613	2	NON-ABERRANT	1	0.495921697	sgMsh2	colon
chr15	101202988	101202988	GA	G	ENSMUST00000000544.11	1	ENSMUSG00000000532	FS	K/X	344	Acvr1b	ENSMUST00000000544.11:c.1037del	ENSMUSP00000000544.9:p.Asn346MetfsTer22	H-2-Kb	8	24	0	LSVMMRSL	NA	NetMHCpan	266.6	NA	NA	87	0.356	394.323	NA	NA	NA	389.86	NA	266.6	NA	593.9364789	NA	398.7860888	PW2017T2	0.814285714	0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.368	87	0	0	NA	15qF1	chr15-3280572-103525164	2	1	1	0.613	2	NON-ABERRANT	1	0.600326264	sgMsh2	colon
chr14	23436016	23436016	TA	T	ENSMUST00000188285.6	1	ENSMUSG00000063142	FS	Y/X	680	Kcnma1	ENSMUST00000188285.6:c.2038del	ENSMUSP00000140275.1:p.Tyr680ThrfsTer31	H-2-Kb	8	8	4	AFFTARPV	NA	SMM	285.588	NA	NA	74	0.176	464.476	NA	NA	NA	585.6	NA	996.8	NA	285.5880296	NA	343.3523309	PW2017T2	0.685714286	0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.18	74	0	0	NA	14qA3	chr14-3072210-123348696	2	1	1	0.613	2	NON-ABERRANT	1	0.587275693	sgMsh2	colon
chr16	37570405	37570405	AT	A	ENSMUST00000023524.12	1	ENSMUSG00000022827	FS	Y/X	208	Rabl3	ENSMUST00000023524.12:c.630del	ENSMUSP00000023524.6:p.Phe210LeufsTer21	H-2-Kb	9	15	0	KVIRFRAFL	NA	NetMHC	22.75	NA	NA	257	0.047	221.627	NA	NA	NA	22.75	NA	32	NA	411.2538721	NA	458.4056903	PW2017T2	0.957142857	1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.044	257	0	0	NA	16qB3	chr16-3948854-97453880	2	1	1	0.613	2	NON-ABERRANT	1	0.143556281	sgMsh2	colon
chr16	90754988	90754988	G	A	ENSMUST00000140920.1	5	ENSMUSG00000039929	missense	R/W	1955	Urb1	ENSMUST00000140920.1:c.5863C>T	ENSMUSP00000114717.1:p.Arg1955Trp	H-2-Kb	9	6	6	SVLSYWATI	SVLSYRATI	NetMHC	27.54	50.33	1.828	110	0.036	82.546	198.661	2.407	50.33	27.54	72.9	28.6	324.4217779	136.4928808	408.5545015	157.1267038	PW2017T2	0.914285714	0.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.04	110	0	0	NA	16qC3.3	chr16-3948854-97453880	2	1	1	0.613	2	NON-ABERRANT	1	0.13050571	sgMsh2	colon
chr10	127285816	127285816	TC	T	ENSMUST00000026476.12	5	ENSMUSG00000025409	FS	G/X	381	Mbd6	ENSMUST00000026476.12:c.1142del	ENSMUSP00000026476.6:p.Gly381GlufsTer108	H-2-Kb	9	35	0	SHPSLFSPL	NA	NetMHC	29.73	NA	NA	45	0.178	159.394	NA	NA	NA	29.73	NA	115.5	NA	203.287184	NA	311.3508101	PW2017T2	0.8	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.213	45	0	0	NA	10qD3	chr10-4453448-130453386	2	1	1	0.613	2	NON-ABERRANT	1	0.694942904	sgMsh2	colon
chr16	10284462	10284462	C	T	ENSMUST00000078357.4	1	ENSMUSG00000022505	missense	G/D	162	Emp2	ENSMUST00000078357.4:c.485G>A	ENSMUSP00000077466.4:p.Gly162Asp	H-2-Kb	9	4	8	FAFTFISDL	FAFTFISGL	NetMHCpan	25.9	10.6	0.409	88	0.102	79.43	39.247	0.494	11.18	34.05	10.6	25.9	67.31471323	136.4928808	81.32985537	124.8101773	PW2017T2	1.271428571	1.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.109	88	0	0	NA	16qA1	chr16-3948854-97453880	2	1	1	0.613	2	NON-ABERRANT	1	0.355628059	sgMsh2	colon
chr14	31295681	31295681	TC	T	ENSMUST00000048603.7	5	ENSMUSG00000019027	FS	G/X	1464	Dnah1	ENSMUST00000048603.7:c.4392del	ENSMUSP00000043281.7:p.Lys1465SerfsTer24	H-2-Kb	9	17	0	SGWCFRHSL	NA	NetMHCpan	24.3	NA	NA	85	0.059	249.699	NA	NA	NA	62.63	NA	24.3	NA	441.6823044	NA	436.7671833	PW2017T2	-0.042857143	-0.042857143	FALSE	FALSE	FALSE	1	FALSE	0	Strelka2;Vardict	2	0.0588	85	0	0	NA	14qB	chr14-3072210-123348696	2	1	1	0.613	2	NON-ABERRANT	1	0.191843393	sgMsh2	colon
chr11	101337488	101337488	C	T	ENSMUST00000103105.9	1	ENSMUSG00000019326	missense	P/L	707	Aoc3	ENSMUST00000103105.9:c.2120C>T	ENSMUSP00000099394.3:p.Pro707Leu	H-2-Kb	9	3	9	NSVGFFLRL	NSVGFFLRP	NetMHCpan	24.6	7563.3	307.451	114	0.044	128.555	4475.427	34.813	10569.79	73.41	7563.3	24.6	847.4420308	183.7003569	1387.55434	188.4733717	PW2017T2	1.785714286	1.785714286	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;Vardict	3	0.058	114	0	0	NA	11qD	chr11-3133205-121238400	2	1	1	0.613	2	NON-ABERRANT	1	0.189233279	sgMsh2	colon
chr10	40076663	40076663	CT	C	ENSMUST00000092566.7	1	ENSMUSG00000019838	FS	K/X	278	Slc16a10	ENSMUST00000092566.7:c.834del	ENSMUSP00000090227.6:p.Val279SerfsTer33	H-2-Kb	9	30	0	YHLHFLATL	NA	NetMHC	87.18	NA	NA	131	0.137	192.557	NA	NA	NA	87.18	NA	104.5	NA	280.61443	NA	303.5638135	PW2017T2	1.728571429	1.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.152	131	0	0	NA	10qB1	chr10-4453448-130453386	2	1	1	0.613	2	NON-ABERRANT	1	0.495921697	sgMsh2	colon
chr1	80533880	80533880	C	A	ENSMUST00000077946.11	5	ENSMUSG00000038608	missense	R/M	1517	Dock10	ENSMUST00000077946.11:c.4550G>T	ENSMUSP00000077099.5:p.Arg1517Met	H-2-Kb	9	11	1	MVFDTYMLF	RVFDTYMLF	NetMHC	93.44	136.88	1.465	287	0.031	103.354	174.58	1.689	136.88	93.44	148.2	101	200.9601749	105.7085218	314.9560825	169.1414308	PW2017T2	0.828571429	1.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.031	287	0	0	NA	1qC5	chr1-6233869-195062457	2	2	0	0.613	2	NON-ABERRANT	1	0.101141925	sgMsh2	colon
chr17	20846848	20846848	AT	A	ENSMUST00000232909.1	NA	ENSMUSG00000045417	FS	F/X	100	Vmn1r230	ENSMUST00000232909.1:c.303del	ENSMUSP00000156546.1:p.Phe101LeufsTer5	H-2-Kb	9	7	6	WSYQFLCMF	WSYQFFMYV	SMM	85.332	39.274	0.46	211	0.062	92.767	37.087	0.4	7.34	94.28	34.9	451.5	39.27443988	85.33162183	42.09688878	91.25359861	PW2017T2	1.285714286	1.285714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.059	211	0	0	NA	17qA3.2	chr17-3170973-94747584	2	1	1	0.613	2	NON-ABERRANT	1	0.192495922	sgMsh2	colon
chr16	44432147	44432147	AT	A	ENSMUST00000099742.8	5	ENSMUSG00000071550	FS	I/X	873	Cfap44	ENSMUST00000099742.8:c.2623del	ENSMUSP00000097331.2:p.Ser875LeufsTer49	H-2-Kb	9	7	7	FVFDIFLNL	FVFDIFSEF	NetMHCpan	53.7	206.1	3.838	161	0.037	146.724	279.586	1.906	375.29	118.42	206.1	53.7	257.6973782	175.0289954	301.4740949	183.7595844	PW2017T2	1.528571429	2.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.044	161	0	0	NA	16qB4	chr16-3948854-97453880	2	1	1	0.613	2	NON-ABERRANT	1	0.143556281	sgMsh2	colon
chr13	11568553	11568553	CA	C	ENSMUST00000021750.14	1	ENSMUSG00000021313	FS	F/X	4738	Ryr2	ENSMUST00000021750.14:c.14214del	ENSMUSP00000021750.7:p.Phe4738LeufsTer15	H-2-Kb	9	4	8	GHYNNFFLL	GHYNNFFFA	NetMHCpan	155.8	1942.4	12.467	116	0.198	179.176	3028.869	16.904	5026.07	161.06	1942.4	155.8	3244.217779	197.2922383	2813.519957	218.9021363	PW2017T2	0.7	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1983	116	0	0	NA	13qA1	chr13-3556909-119495179	2	1	1	0.613	2	NON-ABERRANT	1	0.646982055	sgMsh2	colon
chr11	60778421	60778421	G	A	ENSMUST00000056907.6	1	ENSMUSG00000049323	missense	A/T	132	Smcr8	ENSMUST00000056907.6:c.394G>A	ENSMUSP00000055926.6:p.Ala132Thr	H-2-Kb	9	10	2	GTFAYVHHL	GAFAYVHHL	NetMHCpan	38.8	34.1	0.879	192	0.042	263.741	205.042	0.777	129.38	165.03	34.1	38.8	317.0370367	436.6264089	280.704904	362.4515823	PW2017T2	0.7	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.04	192	0	0	NA	11qB2	chr11-3133205-121238400	2	1	1	0.613	2	NON-ABERRANT	1	0.13050571	sgMsh2	colon
chr16	10284462	10284462	C	T	ENSMUST00000078357.4	1	ENSMUSG00000022505	missense	G/D	162	Emp2	ENSMUST00000078357.4:c.485G>A	ENSMUSP00000077466.4:p.Gly162Asp	H-2-Kb	9	9	3	ISDLMYMIL	ISGLMYMIL	SMM	129.155	83.967	0.65	88	0.102	158.528	88.673	0.559	81.01	171.09	124.2	252	83.96726355	129.1546361	93.37916798	145.9654263	PW2017T2	1.585714286	1.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.109	88	0	0	NA	16qA1	chr16-3948854-97453880	2	1	1	0.613	2	NON-ABERRANT	1	0.355628059	sgMsh2	colon
chr16	44432147	44432147	AT	A	ENSMUST00000099742.8	5	ENSMUSG00000071550	FS	I/X	873	Cfap44	ENSMUST00000099742.8:c.2623del	ENSMUSP00000097331.2:p.Ser875LeufsTer49	H-2-Kb	9	8	6	VFDIFLNLL	VFDIFSEFI	SMM	151.743	1660.007	10.94	161	0.037	245.242	2722.577	11.102	3551.72	283.35	4338.7	1124.4	1660.007308	151.7434661	1893.433253	207.1333361	PW2017T2	1.671428571	1.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.044	161	0	0	NA	16qB4	chr16-3948854-97453880	2	1	1	0.613	2	NON-ABERRANT	1	0.143556281	sgMsh2	colon
chr1	163825819	163825819	T	C	ENSMUST00000027877.6	1	ENSMUSG00000026585	missense	S/P	325	Kifap3	ENSMUST00000027877.6:c.973T>C	ENSMUSP00000027877.5:p.Ser325Pro	H-2-Kb	9	8	4	LVVPFLKKL	LVVSFLKKL	NetMHCpan	143.9	120.8	0.839	159	0.063	471.826	289.819	0.614	191.39	330.95	120.8	143.9	388.2486909	666.9756823	430.7745129	612.7029904	PW2017T2	0.742857143	1.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.065	159	0	0	NA	1qH2.1	chr1-6233869-195062457	2	2	0	0.613	2	NON-ABERRANT	1	0.212071778	sgMsh2	colon
chr12	52516795	52516795	CT	C	ENSMUST00000219443.1	5	ENSMUSG00000035133	FS	L/X	183	Arhgap5	ENSMUST00000219443.1:c.552del	ENSMUSP00000151809.1:p.Phe184LeufsTer11	H-2-Kb	9	13	0	SSYQNPKSL	NA	NetMHCpan	324.5	NA	NA	262	0.027	353.066	NA	NA	NA	337.06	NA	324.5	NA	369.0710667	NA	419.0347115	PW2017T2	-1.542857143	-1.542857143	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Vardict	2	0.027	262	0	0	NA	12qC1	chr12-3237715-119173220	2	1	1	0.613	2	NON-ABERRANT	1	0.088091354	sgMsh2	colon
chr11	101337488	101337488	C	T	ENSMUST00000103105.9	1	ENSMUSG00000019326	missense	P/L	707	Aoc3	ENSMUST00000103105.9:c.2120C>T	ENSMUSP00000099394.3:p.Pro707Leu	H-2-Kb	9	6	6	GFFLRLYNF	GFFLRPYNF	SMM	261.282	615.333	2.355	114	0.044	336.679	885.269	2.629	973.92	339.74	1695.8	1674.5	615.3327071	261.2823058	796.6177885	333.6184037	PW2017T2	0.557142857	1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.058	114	0	0	NA	11qD	chr11-3133205-121238400	2	1	1	0.613	2	NON-ABERRANT	1	0.189233279	sgMsh2	colon
chr12	79186426	79186426	C	T	ENSMUST00000161204.7	1	ENSMUSG00000066441	missense	V/I	145	Rdh11	ENSMUST00000161204.7:c.433G>A	ENSMUSP00000124066.1:p.Val145Ile	H-2-Kb	9	11	1	INHLGHFLL	VNHLGHFLL	NetMHCpan	191.1	187.1	0.979	262	0.031	384.514	286.615	0.745	298.37	364.35	187.1	191.1	274.859024	404.6783774	307.0789168	406.6773641	PW2017T2	1.057142857	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.035	262	0	0	NA	12qC3	chr12-3237715-119173220	2	1	1	0.613	2	NON-ABERRANT	1	0.114192496	sgMsh2	colon
chr12	79186426	79186426	C	T	ENSMUST00000161204.7	1	ENSMUSG00000066441	missense	V/I	145	Rdh11	ENSMUST00000161204.7:c.433G>A	ENSMUSP00000124066.1:p.Val145Ile	H-2-Kb	9	9	3	IGINHLGHF	IGVNHLGHF	NetMHCpan	210.3	417.3	1.984	262	0.031	347.557	557.22	1.603	666.82	376.51	417.3	210.3	651.7934622	445.7691405	462.6472659	318.6031021	PW2017T2	0.114285714	0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.035	262	0	0	NA	12qC3	chr12-3237715-119173220	2	1	1	0.613	2	NON-ABERRANT	1	0.114192496	sgMsh2	colon
chr13	11568553	11568553	CA	C	ENSMUST00000021750.14	1	ENSMUSG00000021313	FS	F/X	4738	Ryr2	ENSMUST00000021750.14:c.14214del	ENSMUSP00000021750.7:p.Phe4738LeufsTer15	H-2-Kb	9	5	7	HYNNFFLLL	HYNNFFFAA	SMM	346.027	3673.753	10.617	116	0.198	446.187	4203.331	9.421	4987.93	682.21	4441.6	461.6	3673.753391	346.02701	3965.062159	430.7745129	PW2017T2	1.428571429	1.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1983	116	0	0	NA	13qA1	chr13-3556909-119495179	2	1	1	0.613	2	NON-ABERRANT	1	0.646982055	sgMsh2	colon
chr10	117051287	117051287	GA	G	ENSMUST00000219690.1	5	ENSMUSG00000034024	FS	F/X	97	Cct2	ENSMUST00000219690.1:c.288del	ENSMUSP00000152005.1:p.Phe97SerfsTer14	H-2-Kb	9	5	7	VGCFFFSPY	VGCFFFFPL	SMMPMBEC	124.81	46.371	0.372	106	0.528	330.822	38.981	0.118	31.59	721.81	19.2	509.9	63.11171763	151.7434661	46.3713778	124.8101773	PW2017T2	1.028571429	1.985714286	FALSE	FALSE	FALSE	1	FALSE	0	Strelka2;Vardict	2	0.5283	106	0	0	NA	10qD2	chr10-4453448-130453386	2	1	1	0.613	2	NON-ABERRANT	1	1	sgMsh2	colon
chr2	83785444	83785444	AG	A	ENSMUST00000028499.10	1	ENSMUSG00000027087	FS	R/X	559	Itgav	ENSMUST00000028499.10:c.1682del	ENSMUSP00000028499.4:p.Gly561AspfsTer48	H-2-Db	9	15	0	CSVRNWSPI	NA	NetMHC	6.61	NA	NA	126	0.079	15.523	NA	NA	NA	6.61	NA	10.6	NA	20.44654817	NA	21.45704935	PW2017T2	-0.371428571	-0.371428571	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.087	126	0	0	NA	2qD	chr2-4513773-181995339	2	1	1	0.613	2	NON-ABERRANT	1	0.283849918	sgMsh2	colon
chr2	13276799	13276799	G	A	ENSMUST00000091436.6	5	ENSMUSG00000026726	missense	R/W	3601	Cubn	ENSMUST00000091436.6:c.10801C>T	ENSMUSP00000089009.5:p.Arg3601Trp	H-2-Db	9	6	6	HASSNWVFI	HASSNRVFI	NetMHCpan	29.2	91.4	3.13	284	0.106	54.208	93.402	1.723	51.34	35.71	91.4	29.2	103.1858153	82.72180458	95.40475047	72.70595779	PW2017T2	0.785714286	0.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.106	284	0	0	NA	2qA1	chr2-4513773-181995339	2	1	1	0.613	2	NON-ABERRANT	1	0.345840131	sgMsh2	colon
chr3	64388644	64388644	C	G	ENSMUST00000170280.2	5	ENSMUSG00000092049	missense	V/L	818	Vmn2r4	ENSMUST00000170280.2:c.2452G>C	ENSMUSP00000127513.1:p.Val818Leu	H-2-Db	9	7	9	SSELNSTTL	SSELNSTTV	SMM	71.552	122.073	1.706	208	0.024	87.061	138.588	1.592	133.77	91.41	260.8	157.6	122.0731075	71.55170714	143.4068842	82.71228143	PW2017T2	-0.228571429	-0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.028	208	0	0	NA	3qE1	chr3-3792373-159911278	2	1	1	0.613	2	NON-ABERRANT	1	0.091353997	sgMsh2	colon
chr6	123713148	123713148	AT	A	ENSMUST00000172391.3	5	ENSMUSG00000091620	FS	F/X	328	Vmn2r23	ENSMUST00000172391.3:c.987del	ENSMUSP00000126682.2:p.Phe329LeufsTer49	H-2-Db	9	28	0	FNLENTLMI	NA	NetMHCpan	174.2	NA	NA	403	0.04	257.583	NA	NA	NA	277.69	NA	174.2	NA	237.4761503	NA	307.3052643	PW2017T2	0.9	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.041	403	0	0	NA	6qF2	chr6-3483595-149019484	2	1	1	0.613	2	NON-ABERRANT	1	0.133768352	sgMsh2	colon
chr3	124321337	124321337	G	A	ENSMUST00000058994.5	NA	ENSMUSG00000044528	missense	A/T	49	Tram1l1	ENSMUST00000058994.5:c.145G>A	ENSMUSP00000062635.4:p.Ala49Thr	H-2-Kb	8	8	4	MSITFLTL	MSIAFLTL	NetMHCpan	8.3	9.5	1.145	103	0.068	13.428	14.265	1.062	10.26	8.96	9.5	8.3	18.27006111	17.89534189	20.97683683	19.13110256	PW2017T2	1.814285714	1.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.065	103	0	0	NA	3qG1	chr3-3792373-159911278	2	1	1	0.613	2	NON-ABERRANT	1	0.212071778	sgMsh2	colon
chr5	25692155	25692155	GT	G	ENSMUST00000030773.11	1	ENSMUSG00000028933	FS	K/X	265	Xrcc2	ENSMUST00000030773.11:c.795del	ENSMUSP00000030773.7:p.Lys265AsnfsTer23	H-2-Kb	8	19	0	VGWSFVDL	NA	NetMHC	13.6	NA	NA	248	0.129	22.527	NA	NA	NA	13.6	NA	21.3	NA	29.76733808	NA	23.75417764	PW2017T2	0.742857143	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.121	248	0	0	NA	5qB1	chr5-3673201-150534477	2	1	1	0.613	2	NON-ABERRANT	1	0.394779772	sgMsh2	colon
chr6	123713148	123713148	AT	A	ENSMUST00000172391.3	5	ENSMUSG00000091620	FS	F/X	328	Vmn2r23	ENSMUST00000172391.3:c.987del	ENSMUSP00000126682.2:p.Phe329LeufsTer49	H-2-Kb	8	9	4	LSFLFTWM	NA	NetMHCpan	22.9	NA	NA	403	0.04	32.398	NA	NA	NA	28.51	NA	22.9	NA	42.73069928	NA	36.28607551	PW2017T2	1.271428571	1.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.041	403	0	0	NA	6qF2	chr6-3483595-149019484	2	1	1	0.613	2	NON-ABERRANT	1	0.133768352	sgMsh2	colon
chr2	13276799	13276799	G	A	ENSMUST00000091436.6	5	ENSMUSG00000026726	missense	R/W	3601	Cubn	ENSMUST00000091436.6:c.10801C>T	ENSMUSP00000089009.5:p.Arg3601Trp	H-2-Kb	8	9	3	SNWVFIRF	SNRVFIRF	NetMHC	48.31	163.06	3.375	284	0.106	99.878	260.664	2.61	163.06	48.31	220.9	106.7	309.5565516	131.1414557	300.4277187	93.0550614	PW2017T2	0.771428571	0.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.106	284	0	0	NA	2qA1	chr2-4513773-181995339	2	1	1	0.613	2	NON-ABERRANT	1	0.345840131	sgMsh2	colon
chr4	43641624	43641624	T	C	ENSMUST00000030191.14	1	ENSMUSG00000028469	missense	L/P	476	Npr2	ENSMUST00000030191.14:c.1427T>C	ENSMUSP00000030191.8:p.Leu476Pro	H-2-Kb	8	9	3	SFPIFRKL	SFLIFRKL	NetMHC	52.29	28.21	0.539	162	0.198	100.696	40.786	0.405	28.21	52.29	54	153.8	36.62182643	85.8499408	44.95106648	115.5420317	PW2017T2	0.557142857	0.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.207	162	0	0	NA	4qA5	chr4-3834436-156223252	2	1	1	0.613	2	NON-ABERRANT	1	0.675367047	sgMsh2	colon
chr7	6429346	6429346	T	G	ENSMUST00000160218.1	1	ENSMUSG00000093536	missense	L/V	96	Smim17	ENSMUST00000160218.1:c.286T>G	ENSMUSP00000126877.1:p.Leu96Val	H-2-Kb	8	8	4	VLFVFLVL	VLFLFLVL	SMMPMBEC	15.092	14.215	0.942	168	0.03	30.267	30.741	1.016	63.16	53.62	46.7	44.1	14.78223152	16.43387578	14.21477533	15.09176382	PW2017T2	3.628571429	3.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.033	168	0	0	NA	7qA1	chr7-3908582-143062472	2	1	1	0.613	2	NON-ABERRANT	1	0.10766721	sgMsh2	colon
chr4	156217156	156217156	GC	G	ENSMUST00000105572.2	1	ENSMUSG00000078486	FS	S/X	52	Perm1	ENSMUST00000105572.2:c.161del	ENSMUSP00000101197.1:p.Pro54LeufsTer49	H-2-Kb	8	51	0	LSWLWRPV	NA	NetMHC	82.3	NA	NA	51	0.098	91.671	NA	NA	NA	82.3	NA	90.5	NA	156.5813381	NA	92.84104069	PW2017T2	-0.1	-0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.102	51	0	0	NA	4qE2	chr4-3834436-156223252	2	1	1	0.613	2	NON-ABERRANT	1	0.33278956	sgMsh2	colon
chr4	41094797	41094797	G	T	ENSMUST00000055327.7	1	ENSMUSG00000028435	missense	L/M	93	Aqp3	ENSMUST00000055327.7:c.277C>A	ENSMUSP00000055110.7:p.Leu93Met	H-2-Kb	8	4	8	VTFAMCFM	VTFAMCFL	NetMHCpan	54.9	20.7	0.377	66	0.076	75.579	20.838	0.276	24.27	87.92	20.7	54.9	17.20838049	68.98267002	20.97683683	82.17505435	PW2017T2	1.857142857	2.185714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.086	66	0	0	NA	4qA5	chr4-3834436-156223252	2	1	1	0.613	2	NON-ABERRANT	1	0.280587276	sgMsh2	colon
chr5	89571642	89571642	C	T	ENSMUST00000048557.2	1	ENSMUSG00000035528	missense	A/V	130	Npffr2	ENSMUST00000048557.2:c.389C>T	ENSMUSP00000040033.2:p.Ala130Val	H-2-Kb	8	11	1	VASVFTLV	AASVFTLV	NetMHC	110.69	767.28	6.932	278	0.032	228.605	992.77	4.343	767.28	110.69	602.4	120.9	1266.893185	336.3101696	1218.260042	355.4184757	PW2017T2	2.185714286	2.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.03	278	0	0	NA	5qE1	chr5-3673201-150534477	2	1	1	0.613	2	NON-ABERRANT	1	0.097879282	sgMsh2	colon
chr2	87002310	87002310	C	T	ENSMUST00000214002.1	5	ENSMUSG00000049843	missense	L/F	114	Olfr1102	ENSMUST00000214002.1:c.340C>T	ENSMUSP00000149634.1:p.Leu114Phe	H-2-Kb	8	9	3	QMFLFVTF	QMLLFVTF	NetMHC	166.19	799.51	4.811	309	0.019	280.804	1306.062	4.651	799.51	166.19	918.8	170.1	1693.323751	405.2658414	1693.323751	391.5074224	PW2017T2	2.514285714	2.514285714	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.024	309	0	0	NA	2qD	chr2-4513773-181995339	2	1	1	0.613	2	NON-ABERRANT	1	0.078303426	sgMsh2	colon
chr4	156217156	156217156	GC	G	ENSMUST00000105572.2	1	ENSMUSG00000078486	FS	S/X	52	Perm1	ENSMUST00000105572.2:c.161del	ENSMUSP00000101197.1:p.Pro54LeufsTer49	H-2-Kb	8	33	0	VSWRTWLL	NA	NetMHCpan	81.4	NA	NA	51	0.098	114.333	NA	NA	NA	180.04	NA	81.4	NA	126.3979412	NA	102.2680559	PW2017T2	-0.028571429	0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.102	51	0	0	NA	4qE2	chr4-3834436-156223252	2	1	1	0.613	2	NON-ABERRANT	1	0.33278956	sgMsh2	colon
chr3	87913145	87913145	CT	C	ENSMUST00000005017.14	1	ENSMUSG00000004897	FS	F/X	48	Hdgf	ENSMUST00000005017.14:c.150del	ENSMUSP00000005017.8:p.Phe50LeufsTer91	H-2-Kb	8	9	5	QVFFLGPM	QVFFFGTH	NetMHCpan	133.5	6279.1	47.034	170	0.076	329.335	4621.078	14.032	8076.13	242.05	6279.1	133.5	2963.056959	416.6198901	1332.723329	491.7450535	PW2017T2	1.928571429	1.928571429	TRUE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0765	170	0	0	NA	3qF1	chr3-3792373-159911278	2	1	1	0.613	2	NON-ABERRANT	1	0.24959217	sgMsh2	colon
chr7	42265983	42265983	A	G	ENSMUST00000166131.1	5	ENSMUSG00000090967	missense	H/R	118	Vmn2r61	ENSMUST00000166131.1:c.353A>G	ENSMUSP00000129576.1:p.His118Arg	H-2-Kb	8	6	6	KNILYRAF	KNILYHAF	NetMHCpan	194.4	194.5	1.001	209	0.072	364.351	456.858	1.254	372.04	248.15	194.5	194.4	580.4168341	523.2870654	541.6765067	480.5515695	PW2017T2	0.514285714	0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.069	209	0	0	NA	7qB3	chr7-3908582-143062472	2	1	1	0.613	2	NON-ABERRANT	1	0.225122349	sgMsh2	colon
chr2	153399446	153399446	AG	A	ENSMUST00000109790.1	5	ENSMUSG00000042548	FS	G/X	640	Asxl1	ENSMUST00000109790.1:c.1925del	ENSMUSP00000105413.1:p.Gly642ValfsTer58	H-2-Kb	8	33	0	VVMVVRPV	NA	NetMHC	253.25	NA	NA	73	0.26	329.794	NA	NA	NA	253.25	NA	280.5	NA	467.4552051	NA	379.0879676	PW2017T2	1.8	1.8	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2603	73	0	0	NA	2qH1	chr2-4513773-181995339	2	1	1	0.613	2	NON-ABERRANT	1	0.849265905	sgMsh2	colon
chr5	127616896	127616896	CG	C	ENSMUST00000031367.14	1	ENSMUSG00000029416	FS	P/X	158	Slc15a4	ENSMUST00000031367.14:c.474del	ENSMUSP00000031367.8:p.Ala159ProfsTer55	H-2-Kb	8	52	0	IGFTGALI	NA	NetMHCpan	136.9	NA	NA	22	0.227	275.62	NA	NA	NA	291.38	NA	136.9	NA	406.2000757	NA	259.8603386	PW2017T2	1.628571429	1.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.249	22	0	0	NA	5qG1.2	chr5-3673201-150534477	2	1	1	0.613	2	NON-ABERRANT	1	0.812398042	sgMsh2	colon
chr5	53701330	53701330	A	G	ENSMUST00000031093.4	1	ENSMUSG00000029193	missense	I/T	216	Cckar	ENSMUST00000031093.4:c.647T>C	ENSMUSP00000031093.3:p.Ile216Thr	H-2-Kb	8	5	7	QTFLLLTL	QTFLLLIL	NetMHCpan	135.8	511.9	3.77	90	0.067	217.87	585.34	2.687	932.66	291.64	511.9	135.8	420.4748265	183.5439188	658.7793843	252.1970487	PW2017T2	2.371428571	2.371428571	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.078	90	0	0	NA	5qC1	chr5-3673201-150534477	2	1	1	0.613	2	NON-ABERRANT	1	0.254486134	sgMsh2	colon
chr2	153399446	153399446	AG	A	ENSMUST00000109790.1	5	ENSMUSG00000042548	FS	G/X	640	Asxl1	ENSMUST00000109790.1:c.1925del	ENSMUSP00000105413.1:p.Gly642ValfsTer58	H-2-Kb	8	36	0	VVRPVATL	NA	SMM	210.737	NA	NA	73	0.26	296.367	NA	NA	NA	295.06	NA	306	NA	210.7366151	NA	297.6733808	PW2017T2	1.028571429	1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2603	73	0	0	NA	2qH1	chr2-4513773-181995339	2	1	1	0.613	2	NON-ABERRANT	1	0.849265905	sgMsh2	colon
chr4	116311687	116311687	A	G	ENSMUST00000106486.7	1	ENSMUSG00000003810	missense	F/L	857	Mast2	ENSMUST00000106486.7:c.2569T>C	ENSMUSP00000102095.1:p.Phe857Leu	H-2-Kb	8	11	1	LSKVYSSM	FSKVYSSM	NetMHCpan	247.8	201.8	0.814	134	0.052	353.719	332.916	0.941	354.13	341.22	201.8	247.8	366.2182643	509.0260401	311.7022951	366.2182643	PW2017T2	-0.214285714	0.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.064	134	0	0	NA	4qD1	chr4-3834436-156223252	2	1	1	0.613	2	NON-ABERRANT	1	0.208809135	sgMsh2	colon
chr7	6429346	6429346	T	G	ENSMUST00000160218.1	1	ENSMUSG00000093536	missense	L/V	96	Smim17	ENSMUST00000160218.1:c.286T>G	ENSMUSP00000126877.1:p.Leu96Val	H-2-Kb	8	6	6	VCVLFVFL	VCVLFLFL	SMMPMBEC	66.335	90.519	1.365	168	0.03	220.426	325	1.474	532.31	348.01	692.6	595.3	117.6901185	92.84104069	90.51905263	66.33458249	PW2017T2	3.442857143	3.5	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.033	168	0	0	NA	7qA1	chr7-3908582-143062472	2	1	1	0.613	2	NON-ABERRANT	1	0.10766721	sgMsh2	colon
chr7	6429346	6429346	T	G	ENSMUST00000160218.1	1	ENSMUSG00000093536	missense	L/V	96	Smim17	ENSMUST00000160218.1:c.286T>G	ENSMUSP00000126877.1:p.Leu96Val	H-2-Kb	8	11	1	VFLVLTGM	LFLVLTGM	NetMHC	369.43	2370.54	6.417	168	0.03	424.475	2173.622	5.121	2370.54	369.43	2150.7	414.7	2196.544469	434.2501729	2031.14066	488.3599043	PW2017T2	2.2	2.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.033	168	0	0	NA	7qA1	chr7-3908582-143062472	2	1	1	0.613	2	NON-ABERRANT	1	0.10766721	sgMsh2	colon
chr3	87913145	87913145	CT	C	ENSMUST00000005017.14	1	ENSMUSG00000004897	FS	F/X	48	Hdgf	ENSMUST00000005017.14:c.150del	ENSMUSP00000005017.8:p.Phe50LeufsTer91	H-2-Kb	8	54	0	TTLQSRPL	NA	SMM	174.478	NA	NA	170	0.076	286.989	NA	NA	NA	375.03	NA	851.1	NA	174.4777291	NA	198.9481935	PW2017T2	-0.5	-0.5	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0765	170	0	0	NA	3qF1	chr3-3792373-159911278	2	1	1	0.613	2	NON-ABERRANT	1	0.24959217	sgMsh2	colon
chr6	123713148	123713148	AT	A	ENSMUST00000172391.3	5	ENSMUSG00000091620	FS	F/X	328	Vmn2r23	ENSMUST00000172391.3:c.987del	ENSMUSP00000126682.2:p.Phe329LeufsTer49	H-2-Kb	8	42	0	CGPSYLNV	NA	NetMHCpan	344.6	NA	NA	403	0.04	454.144	NA	NA	NA	444.05	NA	344.6	NA	464.2372661	NA	714.0687051	PW2017T2	0.057142857	0.057142857	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.041	403	0	0	NA	6qF2	chr6-3483595-149019484	2	1	1	0.613	2	NON-ABERRANT	1	0.133768352	sgMsh2	colon
chr5	3584278	3584278	AC	A	ENSMUST00000008451.11	1	ENSMUSG00000008307	FS	N/X	205	1700109H08Rik	ENSMUST00000008451.11:c.620del	ENSMUSP00000008451.5:p.Pro207LeufsTer12	H-2-Kb	8	6	8	LVFKNNPL	LVFKNNPP	NetMHCpan	207.9	16577.2	79.736	204	0.029	282.029	12194.4	43.238	22683.5	451.51	16577.2	207.9	7811.600059	322.6561891	6262.388407	241.4015198	PW2017T2	-0.242857143	-0.242857143	FALSE	FALSE	FALSE	0	FALSE	1	Strelka2;Vardict	2	0.0294	204	0	0	NA	5qA1	NA	NA	NA	NA	0.613	2	NON-ABERRANT	NA	NA	sgMsh2	colon
chr2	83785444	83785444	AG	A	ENSMUST00000028499.10	1	ENSMUSG00000027087	FS	R/X	559	Itgav	ENSMUST00000028499.10:c.1682del	ENSMUSP00000028499.4:p.Gly561AspfsTer48	H-2-Kb	8	43	0	IGWTRERL	NA	NetMHCpan	193.8	NA	NA	126	0.079	400.866	NA	NA	NA	619.39	NA	193.8	NA	482.7696948	NA	318.9627742	PW2017T2	-1.528571429	-1.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.087	126	0	0	NA	2qD	chr2-4513773-181995339	2	1	1	0.613	2	NON-ABERRANT	1	0.283849918	sgMsh2	colon
chr4	43641624	43641624	T	C	ENSMUST00000030191.14	1	ENSMUSG00000028469	missense	L/P	476	Npr2	ENSMUST00000030191.14:c.1427T>C	ENSMUSP00000030191.8:p.Leu476Pro	H-2-Kb	9	8	4	SSFPIFRKL	SSFLIFRKL	NetMHCpan	15.9	10.9	0.686	162	0.198	102.663	63.1	0.615	12.11	18.15	10.9	15.9	118.6069123	199.5767748	114.0906357	187.1759302	PW2017T2	0.557142857	0.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.207	162	0	0	NA	4qA5	chr4-3834436-156223252	2	1	1	0.613	2	NON-ABERRANT	1	0.675367047	sgMsh2	colon
chr2	86008144	86008144	G	T	ENSMUST00000079298.4	5	ENSMUSG00000042796	missense	A/S	123	Olfr1032	ENSMUST00000079298.4:c.367G>T	ENSMUSP00000078279.3:p.Ala123Ser	H-2-Kb	9	4	8	MAFDRYMSI	MAFDRYMAI	NetMHCpan	13.9	15.1	1.086	682	0.022	42.535	41.273	0.97	26.15	28.02	15.1	13.9	59.99430132	62.10263106	56.39622051	57.04925797	PW2017T2	-0.128571429	-0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.025	682	0	0	NA	2qD	chr2-4513773-181995339	2	1	1	0.613	2	NON-ABERRANT	1	0.081566069	sgMsh2	colon
chr2	83785444	83785444	AG	A	ENSMUST00000028499.10	1	ENSMUSG00000027087	FS	R/X	559	Itgav	ENSMUST00000028499.10:c.1682del	ENSMUSP00000028499.4:p.Gly561AspfsTer48	H-2-Kb	9	20	0	WSPIFGMNL	NA	NetMHC	46.31	NA	NA	126	0.079	435.115	NA	NA	NA	46.31	NA	131.9	NA	769.3252737	NA	738.3291242	PW2017T2	1.071428571	1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.087	126	0	0	NA	2qD	chr2-4513773-181995339	2	1	1	0.613	2	NON-ABERRANT	1	0.283849918	sgMsh2	colon
chr5	127616896	127616896	CG	C	ENSMUST00000031367.14	1	ENSMUSG00000029416	FS	P/X	158	Slc15a4	ENSMUST00000031367.14:c.474del	ENSMUSP00000031367.8:p.Ala159ProfsTer55	H-2-Kb	9	50	0	FSIGFTGAL	NA	NetMHC	67.05	NA	NA	22	0.227	176.099	NA	NA	NA	67.05	NA	115	NA	237.1974414	NA	246.7459312	PW2017T2	1.628571429	1.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.249	22	0	0	NA	5qG1.2	chr5-3673201-150534477	2	1	1	0.613	2	NON-ABERRANT	1	0.812398042	sgMsh2	colon
chr6	125281244	125281244	G	A	ENSMUST00000088246.5	1	ENSMUSG00000067702	missense	P/L	261	Tuba3a	ENSMUST00000088246.5:c.782C>T	ENSMUSP00000085580.5:p.Pro261Leu	H-2-Kb	9	7	5	TNLVLYPRI	TNLVPYPRI	NetMHCpan	77.9	183.7	2.358	298	0.027	120.563	204.073	1.693	121.02	84.36	183.7	77.9	224.4450336	166.383402	268.0711022	156.7653224	PW2017T2	1.271428571	1.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.029	298	0	0	NA	6qF3	chr6-3483595-149019484	2	1	1	0.613	2	NON-ABERRANT	1	0.094616639	sgMsh2	colon
chr17	83425299	83425299	GA	G	ENSMUST00000096766.11	1	ENSMUSG00000032624	FS	E/X	127	Eml4	ENSMUST00000096766.11:c.387del	ENSMUSP00000094528.4:p.Glu130ArgfsTer27	H-2-Kb	9	21	0	RAHKFERHL	NA	NetMHC	102.31	NA	NA	38	0.211	487.68	NA	NA	NA	102.31	NA	460	NA	515.3591605	NA	695.4245209	PW2017T2	-1.671428571	-1.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2105	38	0	0	NA	17qE4	chr17-3170973-94747584	2	1	1	0.613	2	NON-ABERRANT	1	0.686786297	sgMsh2	colon
chr7	42265983	42265983	A	G	ENSMUST00000166131.1	5	ENSMUSG00000090967	missense	H/R	118	Vmn2r61	ENSMUST00000166131.1:c.353A>G	ENSMUSP00000129576.1:p.His118Arg	H-2-Kb	9	6	6	KNILYRAFI	KNILYHAFI	NetMHCpan	54.2	24.7	0.456	209	0.072	390.002	220.934	0.566	57.94	139.9	24.7	54.2	444.7438999	670.0543022	383.9281887	640.1032025	PW2017T2	1.657142857	1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.069	209	0	0	NA	7qB3	chr7-3908582-143062472	2	1	1	0.613	2	NON-ABERRANT	1	0.225122349	sgMsh2	colon
chr19	7432016	7432016	A	C	ENSMUST00000065304.12	1	ENSMUSG00000024758	missense	L/R	898	Rtn3	ENSMUST00000065304.12:c.2693T>G	ENSMUSP00000065810.5:p.Leu898Arg	H-2-Kb	9	7	5	VFMWRMTYV	VFMWLMTYV	NetMHC	142.34	458.38	3.22	234	0.064	201.054	517.282	2.573	458.38	142.34	1523	427.2	524.9404026	211.8897751	509.6241499	190.2172944	PW2017T2	0.085714286	0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.069	234	0	0	NA	19qA	chr19-3904717-60850867	2	1	1	0.613	2	NON-ABERRANT	1	0.225122349	sgMsh2	colon
chr2	83785444	83785444	AG	A	ENSMUST00000028499.10	1	ENSMUSG00000027087	FS	R/X	559	Itgav	ENSMUST00000028499.10:c.1682del	ENSMUSP00000028499.4:p.Gly561AspfsTer48	H-2-Kb	9	43	0	IGWTRERLL	NA	NetMHC	217.43	NA	NA	126	0.079	262.296	NA	NA	NA	217.43	NA	247.1	NA	336.5968133	NA	277.4917016	PW2017T2	-0.928571429	-0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.087	126	0	0	NA	2qD	chr2-4513773-181995339	2	1	1	0.613	2	NON-ABERRANT	1	0.283849918	sgMsh2	colon
chr2	155415806	155415806	C	A	ENSMUST00000109670.7	5	ENSMUSG00000038369	missense	G/W	606	Ncoa6	ENSMUST00000109670.7:c.1816G>T	ENSMUSP00000105295.1:p.Gly606Trp	H-2-Kb	9	9	3	SSWVPQVTL	SSGVPQVTL	NetMHC	228.61	1914.69	8.375	84	0.083	399.732	1753.908	4.388	1914.69	228.61	4635.2	335.9	1191.543769	463.5643185	1593.12554	609.8878759	PW2017T2	0.785714286	0.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.091	84	0	0	NA	2qH1	chr2-4513773-181995339	2	1	1	0.613	2	NON-ABERRANT	1	0.296900489	sgMsh2	colon
chr19	13585744	13585744	T	C	ENSMUST00000216014.2	2	ENSMUSG00000096289	missense	S/P	147	Olfr1484	ENSMUST00000216014.2:c.439T>C	ENSMUSP00000150019.2:p.Ser147Pro	H-2-Kb	9	8	4	LAGPYLSGL	LAGSYLSGL	NetMHC	286.05	150.59	0.526	547	0.013	343.526	221.49	0.645	150.59	286.05	394.8	400.8	192.8013187	331.2150024	250.1785091	355.8360953	PW2017T2	0.442857143	0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.016	547	0	0	NA	19qA	chr19-3904717-60850867	2	1	1	0.613	2	NON-ABERRANT	1	0.052202284	sgMsh2	colon
chr5	53701330	53701330	A	G	ENSMUST00000031093.4	1	ENSMUSG00000029193	missense	I/T	216	Cckar	ENSMUST00000031093.4:c.647T>C	ENSMUSP00000031093.3:p.Ile216Thr	H-2-Kb	9	5	7	QTFLLLTLF	QTFLLLILF	SMM	243.843	257.697	1.057	90	0.067	337.498	496	1.47	581.56	301.53	4431	1100.4	257.6973782	243.8428356	410.4403034	373.4650797	PW2017T2	2.871428571	2.871428571	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.078	90	0	0	NA	5qC1	chr5-3673201-150534477	2	1	1	0.613	2	NON-ABERRANT	1	0.254486134	sgMsh2	colon
chr7	80392507	80392507	TG	T	ENSMUST00000120753.2	5	ENSMUSG00000030530	FS	Q/X	447	Furin	ENSMUST00000120753.2:c.1339del	ENSMUSP00000113793.1:p.Gln447SerfsTer19	H-2-Kb	9	8	4	VAPSGSALL	NA	NetMHC	331.74	NA	NA	96	0.083	391.123	NA	NA	NA	331.74	NA	417.4	NA	364.8463451	NA	611.2938126	PW2017T2	0.828571429	0.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.079	96	0	0	NA	7qD2	chr7-3908582-143062472	2	1	1	0.613	2	NON-ABERRANT	1	0.257748777	sgMsh2	colon
chr7	6429346	6429346	T	G	ENSMUST00000160218.1	1	ENSMUSG00000093536	missense	L/V	96	Smim17	ENSMUST00000160218.1:c.286T>G	ENSMUSP00000126877.1:p.Leu96Val	H-2-Kb	9	10	2	FVFLVLTGM	FLFLVLTGM	NetMHC	336.08	1469.79	4.373	168	0.03	467.925	1504.415	3.215	1469.79	336.08	2716.2	972.2	1455.827772	413.1521337	1539.040328	522.696991	PW2017T2	2.2	2.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.033	168	0	0	NA	7qA1	chr7-3908582-143062472	2	1	1	0.613	2	NON-ABERRANT	1	0.10766721	sgMsh2	colon
chr7	3653532	3653532	TC	T	ENSMUST00000038913.15	1	ENSMUSG00000035632	FS	S/X	242	Cnot3	ENSMUST00000038913.15:c.732del	ENSMUSP00000039098.9:p.Ser245AlafsTer90	H-2-Kb	9	52	0	KMIRREADL	NA	SMMPMBEC	263.785	NA	NA	41	0.122	324.34	NA	NA	NA	341.7	NA	1361.8	NA	306.9799422	NA	263.7849417	PW2017T2	-0.842857143	-0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.122	41	0	0	NA	7qA1	NA	NA	NA	NA	0.613	2	NON-ABERRANT	NA	NA	sgMsh2	colon
chr3	87913145	87913145	CT	C	ENSMUST00000005017.14	1	ENSMUSG00000004897	FS	F/X	48	Hdgf	ENSMUST00000005017.14:c.150del	ENSMUSP00000005017.8:p.Phe50LeufsTer91	H-2-Kb	9	8	6	YQVFFLGPM	YQVFFFGTH	NetMHCpan	208	10598.6	50.955	170	0.076	455.442	6575.522	14.438	9408.99	400.25	10598.6	208	3742.053566	510.6343193	3063.726549	525.1096507	PW2017T2	1.928571429	1.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0765	170	0	0	NA	3qF1	chr3-3792373-159911278	2	1	1	0.613	2	NON-ABERRANT	1	0.24959217	sgMsh2	colon
chr7	6429346	6429346	T	G	ENSMUST00000160218.1	1	ENSMUSG00000093536	missense	L/V	96	Smim17	ENSMUST00000160218.1:c.286T>G	ENSMUSP00000126877.1:p.Leu96Val	H-2-Kb	9	5	7	VVCVLFVFL	VVCVLFLFL	SMMPMBEC	195.997	221.437	1.13	168	0.03	353.006	402.298	1.14	531	436.17	1042.2	1027.2	273.5961615	269.8422814	221.4369036	195.99726	PW2017T2	3.442857143	3.7	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.033	168	0	0	NA	7qA1	chr7-3908582-143062472	2	1	1	0.613	2	NON-ABERRANT	1	0.10766721	sgMsh2	colon
chr3	141856491	141856491	G	T	ENSMUST00000029948.14	1	ENSMUSG00000052430	missense	L/I	312	Bmpr1b	ENSMUST00000029948.14:c.934C>A	ENSMUSP00000029948.7:p.Leu312Ile	H-2-Kb	9	3	9	LAYSSVSGI	LAYSSVSGL	NetMHCpan	342	82.9	0.242	182	0.044	435.564	135.049	0.31	97.47	442.47	82.9	342	172.6275075	428.6570788	241.6851686	558.7917686	PW2017T2	0.657142857	0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.044	182	0	0	NA	3qH1	chr3-3792373-159911278	2	1	1	0.613	2	NON-ABERRANT	1	0.143556281	sgMsh2	colon
chr5	89571642	89571642	C	T	ENSMUST00000048557.2	1	ENSMUSG00000035528	missense	A/V	130	Npffr2	ENSMUST00000048557.2:c.389C>T	ENSMUSP00000040033.2:p.Ala130Val	H-2-Kb	9	10	2	VVASVFTLV	VAASVFTLV	SMM	391.841	348.426	0.889	278	0.032	473.855	391.653	0.827	434.88	511.81	297.8	435.9	348.4255546	391.8411118	514.3396441	594.6343592	PW2017T2	2.185714286	2.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.03	278	0	0	NA	5qE1	chr5-3673201-150534477	2	1	1	0.613	2	NON-ABERRANT	1	0.097879282	sgMsh2	colon
chr5	120787988	120787988	TA	T	ENSMUST00000201172.1	1	ENSMUSG00000066867	FS	F/X	338	Oas1e	ENSMUST00000201172.1:c.1014del	ENSMUSP00000144529.1:p.Phe338LeufsTer9	H-2-Kb	9	3	9	QTWIHSNFL	QTWIHSNFF	SMM	353.273	595.813	1.687	258	0.12	438.717	1086.733	2.477	1632.29	536.12	1327.7	388.5	595.8130345	353.2726369	845.7655669	488.9337312	PW2017T2	0.385714286	0.385714286	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.117	258	0	0	NA	5qF	chr5-3673201-150534477	2	1	1	0.613	2	NON-ABERRANT	1	0.381729201	sgMsh2	colon
chr2	48898564	48898564	TA	T	ENSMUST00000063886.3	1	ENSMUSG00000052155	FS	K/X	435	Acvr2a	ENSMUST00000063886.3:c.1310del	ENSMUSP00000067305.3:p.Lys437ArgfsTer5	H-2-Kb	9	8	6	VVHKKRGLF	VVHKKKRPV	SMM	417.936	621.026	1.486	201	0.095	493.429	698.682	1.416	685.74	546.05	4295.7	2279.7	621.0263106	417.9362099	711.6230389	440.8085403	PW2017T2	-1.328571429	-1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0945	201	0	0	NA	2qC1.1	chr2-4513773-181995339	2	1	1	0.613	2	NON-ABERRANT	1	0.308319739	sgMsh2	colon
chr8	64056321	64056321	G	T	ENSMUST00000066166.5	1	ENSMUSG00000053626	missense	L/M	552	Tll1	ENSMUST00000066166.5:c.1654C>A	ENSMUSP00000070560.4:p.Leu552Met	H-2-Db	9	5	7	RSTSNTMWM	RSTSNTLWM	NetMHC	71.67	62.47	0.872	145	0.076	272.745	235.609	0.864	62.47	71.67	378.6	358.8	205.4092515	237.4761503	265.8091949	308.0136761	PW2017T2	-0.4	-0.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.088	145	0	0	NA	8qB3.1	chr8-3748601-129027388	2	1	1	0.613	2	NON-ABERRANT	1	0.287112561	sgMsh2	colon
chr8	124003162	124003162	C	T	ENSMUST00000165628.8	1	ENSMUSG00000038697	missense	A/T	263	Taf5l	ENSMUST00000165628.8:c.787G>A	ENSMUSP00000128710.1:p.Ala263Thr	H-2-Db	9	10	2	YTFYNTEQL	YAFYNTEQL	NetMHCpan	46.3	6.8	0.147	120	0.058	181.187	26.666	0.147	16.47	151.72	6.8	46.3	41.74649324	271.4063472	36.86124504	210.6541406	PW2017T2	-0.842857143	-0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.055	120	0	0	NA	8qE2	chr8-3748601-129027388	2	1	1	0.613	2	NON-ABERRANT	1	0.179445351	sgMsh2	colon
chrX	75379574	75379574	G	A	ENSMUST00000033539.12	1	ENSMUSG00000031196	missense	A/V	20	F8	ENSMUST00000033539.12:c.59C>T	ENSMUSP00000033539.6:p.Ala20Val	H-2-Kb	8	10	2	SVIRRYYL	SAIRRYYL	NetMHC	31.86	24.94	0.783	103	0.039	192.949	199.881	1.036	24.94	31.86	57.2	58	342.5626424	348.1288376	354.6010359	327.8989304	PW2017T2	0.128571429	0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.044	103	0	0	NA	XqA7.3	NA	NA	NA	NA	0.613	2	NON-ABERRANT	NA	NA	sgMsh2	colon
chr9	38581593	38581593	GT	G	ENSMUST00000217160.2	2	ENSMUSG00000111448	FS	C/X	105	Olfr912	ENSMUST00000217160.2:c.321del	ENSMUSP00000150014.1:p.Phe107LeufsTer9	H-2-Kb	8	6	8	QLYFFCFL	QLYFFCFF	SMM	34.494	560.712	16.255	550	0.018	54.717	600.357	10.972	1082.4	86.51	599.9	61.6	560.7121928	34.49371732	600.8139392	47.83436356	PW2017T2	2.457142857	2.457142857	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.019	550	0	0	NA	9qA5.1	chr9-3342997-124127224	2	1	1	0.613	2	NON-ABERRANT	1	0.061990212	sgMsh2	colon
chr9	110428666	110428666	AC	A	ENSMUST00000068025.12	1	ENSMUSG00000054792	FS	V/X	564	Klhl18	ENSMUST00000068025.12:c.1690del	ENSMUSP00000069674.6:p.Val564LeufsTer48	H-2-Kb	8	32	0	IWYKHRRF	NA	NetMHC	117.98	NA	NA	97	0.103	281.014	NA	NA	NA	117.98	NA	1114.3	NA	313.8629122	NA	248.1646968	PW2017T2	-2.214285714	-1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1031	97	0	0	NA	9qF2	chr9-3342997-124127224	2	1	1	0.613	2	NON-ABERRANT	1	0.336378467	sgMsh2	colon
chr7	127391766	127391766	C	T	ENSMUST00000165495.1	2	ENSMUSG00000078580	missense	A/T	350	E430018J23Rik	ENSMUST00000165495.1:c.1048G>A	ENSMUSP00000126288.1:p.Ala350Thr	H-2-Kb	8	10	2	ATYLQCHM	AAYLQCHM	NetMHCpan	113	112.6	0.996	177	0.124	196.008	256.649	1.309	147.08	155.02	112.6	113	366.2182643	236.9954455	488.3599043	308.8445912	PW2017T2	-0.071428571	-0.071428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.118	177	0	0	NA	7qF3	chr7-3908582-143062472	2	1	1	0.613	2	NON-ABERRANT	1	0.384991843	sgMsh2	colon
chr9	39910567	39910567	G	A	ENSMUST00000214904.1	5	ENSMUSG00000095390	missense	A/T	255	Olfr229	ENSMUST00000214904.1:c.763G>A	ENSMUSP00000149063.1:p.Ala255Thr	H-2-Kb	8	9	3	GSTAFMYL	GSAAFMYL	SMMPMBEC	141.495	140.197	0.991	406	0.015	155.713	148.349	0.953	163.4	156.28	156.5	270.3	138.9120754	155.1457917	140.197413	141.4946437	PW2017T2	1.071428571	1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.019	406	0	0	NA	9qA5.1	chr9-3342997-124127224	2	1	1	0.613	2	NON-ABERRANT	1	0.061990212	sgMsh2	colon
chr7	100391154	100391154	AC	A	ENSMUST00000051777.14	5	ENSMUSG00000047248	FS	T/X	310	C2cd3	ENSMUST00000051777.14:c.935del	ENSMUSP00000062637.7:p.Pro312LeufsTer10	H-2-Kb	8	13	1	LQRTFFQL	NA	SMMPMBEC	132.66	NA	NA	289	0.093	146.807	NA	NA	NA	200.95	NA	141.3	NA	152.3140619	NA	132.6600022	PW2017T2	-0.4	-0.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.094	289	0	0	NA	7qE2	chr7-3908582-143062472	2	1	1	0.613	2	NON-ABERRANT	1	0.306688418	sgMsh2	colon
chr8	124003162	124003162	C	T	ENSMUST00000165628.8	1	ENSMUSG00000038697	missense	A/T	263	Taf5l	ENSMUST00000165628.8:c.787G>A	ENSMUSP00000128710.1:p.Ala263Thr	H-2-Kb	8	8	4	CFYTFYNT	CFYAFYNT	SMM	100.171	102.268	1.021	120	0.058	205.511	240.094	1.168	354.08	296.01	762.8	677.3	102.2680559	100.1705365	126.107234	115.0111643	PW2017T2	-0.271428571	0.185714286	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.055	120	0	0	NA	8qE2	chr8-3748601-129027388	2	1	1	0.613	2	NON-ABERRANT	1	0.179445351	sgMsh2	colon
chr8	124003162	124003162	C	T	ENSMUST00000165628.8	1	ENSMUSG00000038697	missense	A/T	263	Taf5l	ENSMUST00000165628.8:c.787G>A	ENSMUSP00000128710.1:p.Ala263Thr	H-2-Kb	8	5	7	TTICFYTF	TTICFYAF	NetMHCpan	160	143.4	0.896	120	0.058	454.3	238.679	0.525	157.66	405.4	143.4	160	349.7357273	581.7548331	319.6980594	503.1992672	PW2017T2	1.414285714	1.414285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.055	120	0	0	NA	8qE2	chr8-3748601-129027388	2	1	1	0.613	2	NON-ABERRANT	1	0.179445351	sgMsh2	colon
chr9	39910567	39910567	G	A	ENSMUST00000214904.1	5	ENSMUSG00000095390	missense	A/T	255	Olfr229	ENSMUST00000214904.1:c.763G>A	ENSMUSP00000149063.1:p.Ala255Thr	H-2-Kb	8	4	8	VAIFYGST	VAIFYGSA	NetMHCpan	247.1	155.9	0.631	406	0.015	418.511	332.916	0.795	346.87	499.67	155.9	247.1	369.6068402	492.8786429	318.9627742	344.1438398	PW2017T2	0.842857143	1.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.019	406	0	0	NA	9qA5.1	chr9-3342997-124127224	2	1	1	0.613	2	NON-ABERRANT	1	0.061990212	sgMsh2	colon
chr9	9984092	9984092	GT	G	ENSMUST00000160216.7	5	ENSMUSG00000039488	FS	N/X	377	Cntn5	ENSMUST00000160216.7:c.1130del	ENSMUSP00000124327.1:p.Asn377ThrfsTer19	H-2-Kb	8	15	0	DSYKYSHT	NA	SMMPMBEC	281.022	NA	NA	138	0.13	493.255	NA	NA	NA	594.1	NA	1956.6	NA	392.4099402	NA	281.0217928	PW2017T2	-1.714285714	-1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.135	138	0	0	NA	9qA1	chr9-3342997-124127224	2	1	1	0.613	2	NON-ABERRANT	1	0.44045677	sgMsh2	colon
chr8	40507537	40507537	G	A	ENSMUST00000149992.1	1	ENSMUSG00000031601	missense	L/F	77	Cnot7	ENSMUST00000149992.1:c.229C>T	ENSMUSP00000117304.1:p.Leu77Phe	H-2-Kb	8	9	3	IQFGLTFM	IQLGLTFM	NetMHCpan	371.2	2526.8	6.807	213	0.056	494.584	2334.204	4.72	5605.12	949.97	2526.8	371.2	2064.14404	494.0148455	2141.608096	495.1536674	PW2017T2	0.957142857	1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.057	213	0	0	NA	8qA4	chr8-3748601-129027388	2	1	1	0.613	2	NON-ABERRANT	1	0.185970636	sgMsh2	colon
chr8	108946656	108946656	G	A	ENSMUST00000220518.1	5	ENSMUSG00000038872	missense	R/H	1446	Zfhx3	ENSMUST00000220518.1:c.4337G>A	ENSMUSP00000152353.1:p.Arg1446His	H-2-Kb	9	11	1	HSFRTFQAL	RSFRTFQAL	NetMHC	14.45	6.57	0.455	65	0.092	119.329	98.378	0.824	6.57	14.45	19.7	46.3	177.0557356	192.357888	232.4074256	274.9476424	PW2017T2	0.357142857	0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.102	65	0	0	NA	8qD3	chr8-3748601-129027388	2	1	1	0.613	2	NON-ABERRANT	1	0.33278956	sgMsh2	colon
chrX	75379574	75379574	G	A	ENSMUST00000033539.12	1	ENSMUSG00000031196	missense	A/V	20	F8	ENSMUST00000033539.12:c.59C>T	ENSMUSP00000033539.6:p.Ala20Val	H-2-Kb	9	3	9	SLFNFCSSV	SLFNFCSSA	NetMHC	36.77	247.75	6.738	103	0.039	203.947	763.934	3.746	247.75	36.77	187.7	37	1581.648595	396.378418	1280.117987	370.8941642	PW2017T2	1.028571429	1.028571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.044	103	0	0	NA	XqA7.3	NA	NA	NA	NA	0.613	2	NON-ABERRANT	NA	NA	sgMsh2	colon
chr9	110428666	110428666	AC	A	ENSMUST00000068025.12	1	ENSMUSG00000054792	FS	V/X	564	Klhl18	ENSMUST00000068025.12:c.1690del	ENSMUSP00000069674.6:p.Val564LeufsTer48	H-2-Kb	9	32	0	IWYKHRRFL	NA	NetMHC	37.19	NA	NA	97	0.103	66.353	NA	NA	NA	37.19	NA	132.3	NA	53.59323836	NA	79.11339102	PW2017T2	-1.542857143	-1.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1031	97	0	0	NA	9qF2	chr9-3342997-124127224	2	1	1	0.613	2	NON-ABERRANT	1	0.336378467	sgMsh2	colon
chr9	38581593	38581593	GT	G	ENSMUST00000217160.2	2	ENSMUSG00000111448	FS	C/X	105	Olfr912	ENSMUST00000217160.2:c.321del	ENSMUSP00000150014.1:p.Phe107LeufsTer9	H-2-Kb	9	5	9	TQLYFFCFL	TQLYFFCFF	NetMHCpan	42.2	412.6	9.777	550	0.018	119.532	347.361	2.906	332.27	47.59	412.6	42.2	322.9311952	191.4740838	362.4515823	209.5318271	PW2017T2	2.457142857	2.457142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.019	550	0	0	NA	9qA5.1	chr9-3342997-124127224	2	1	1	0.613	2	NON-ABERRANT	1	0.061990212	sgMsh2	colon
chr7	127391766	127391766	C	T	ENSMUST00000165495.1	2	ENSMUSG00000078580	missense	A/T	350	E430018J23Rik	ENSMUST00000165495.1:c.1048G>A	ENSMUSP00000126288.1:p.Ala350Thr	H-2-Kb	9	5	7	RAFARATYL	RAFARAAYL	NetMHCpan	39	21.2	0.544	177	0.124	178.425	115.748	0.649	27.74	84.51	21.2	39	203.7558094	272.3391013	212.9364454	289.9011913	PW2017T2	0.528571429	0.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.118	177	0	0	NA	7qF3	chr7-3908582-143062472	2	1	1	0.613	2	NON-ABERRANT	1	0.384991843	sgMsh2	colon
chrX	75379574	75379574	G	A	ENSMUST00000033539.12	1	ENSMUSG00000031196	missense	A/V	20	F8	ENSMUST00000033539.12:c.59C>T	ENSMUSP00000033539.6:p.Ala20Val	H-2-Kb	9	9	3	SSVIRRYYL	SSAIRRYYL	NetMHC	97.73	230.31	2.357	103	0.039	217.332	289.512	1.332	230.31	97.73	350	199.1	261.8846237	235.5645857	317.1392538	246.1784313	PW2017T2	0.128571429	0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.044	103	0	0	NA	XqA7.3	NA	NA	NA	NA	0.613	2	NON-ABERRANT	NA	NA	sgMsh2	colon
chrX	75379574	75379574	G	A	ENSMUST00000033539.12	1	ENSMUSG00000031196	missense	A/V	20	F8	ENSMUST00000033539.12:c.59C>T	ENSMUSP00000033539.6:p.Ala20Val	H-2-Kb	9	11	1	VIRRYYLGA	AIRRYYLGA	NetMHC	103.47	447.76	4.327	103	0.039	286.36	899.094	3.14	447.76	103.47	932.4	262.9	920.6827368	309.8203926	877.5058087	317.8703353	PW2017T2	-0.914285714	0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.044	103	0	0	NA	XqA7.3	NA	NA	NA	NA	0.613	2	NON-ABERRANT	NA	NA	sgMsh2	colon
chr8	124003162	124003162	C	T	ENSMUST00000165628.8	1	ENSMUSG00000038697	missense	A/T	263	Taf5l	ENSMUST00000165628.8:c.787G>A	ENSMUSP00000128710.1:p.Ala263Thr	H-2-Kb	9	11	1	TFYNTEQLL	AFYNTEQLL	NetMHC	202.94	228.99	1.128	120	0.058	282.176	345.857	1.226	228.99	202.94	1248.5	897.3	271.7127388	230.7331526	420.0006862	333.6184037	PW2017T2	-0.7	-0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.055	120	0	0	NA	8qE2	chr8-3748601-129027388	2	1	1	0.613	2	NON-ABERRANT	1	0.179445351	sgMsh2	colon
chr9	39910567	39910567	G	A	ENSMUST00000214904.1	5	ENSMUSG00000095390	missense	A/T	255	Olfr229	ENSMUST00000214904.1:c.763G>A	ENSMUSP00000149063.1:p.Ala255Thr	H-2-Kb	9	6	6	IFYGSTAFM	IFYGSAAFM	NetMHC	244.3	259.53	1.062	406	0.015	291.132	329.987	1.133	259.53	244.3	289.2	298.4	370.7746213	283.863792	440.8085403	316.4098538	PW2017T2	0.471428571	0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.019	406	0	0	NA	9qA5.1	chr9-3342997-124127224	2	1	1	0.613	2	NON-ABERRANT	1	0.061990212	sgMsh2	colon
chr9	96052519	96052519	CA	C	ENSMUST00000034981.13	1	ENSMUSG00000032410	FS	K/X	1628	Xrn1	ENSMUST00000034981.13:c.4888del	ENSMUSP00000034981.7:p.Arg1630GlufsTer34	H-2-Kb	9	27	0	VLRPHHFRL	NA	NetMHCpan	114.7	NA	NA	66	0.076	331.489	NA	NA	NA	258.17	NA	114.7	NA	423.7502818	NA	404.8088513	PW2017T2	-1.485714286	-0.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0758	66	0	0	NA	9qE3.3	chr9-3342997-124127224	2	1	1	0.613	2	NON-ABERRANT	1	0.24730832	sgMsh2	colon
chr9	39910567	39910567	G	A	ENSMUST00000214904.1	5	ENSMUSG00000095390	missense	A/T	255	Olfr229	ENSMUST00000214904.1:c.763G>A	ENSMUSP00000149063.1:p.Ala255Thr	H-2-Kb	9	11	1	TAFMYLQPS	AAFMYLQPS	SMM	124.197	146.255	1.178	406	0.015	180.914	215.426	1.191	389.94	309.12	227.5	200.3	146.2547568	124.1966839	203.3527266	161.5288124	PW2017T2	0.185714286	0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.019	406	0	0	NA	9qA5.1	chr9-3342997-124127224	2	1	1	0.613	2	NON-ABERRANT	1	0.061990212	sgMsh2	colon
chr9	66400129	66400129	A	T	ENSMUST00000042824.12	5	ENSMUSG00000038664	missense	N/I	1035	Herc1	ENSMUST00000042824.12:c.3104A>T	ENSMUSP00000044801.6:p.Asn1035Ile	H-2-Kb	9	4	8	DIYSRSAIL	DIYSRSANL	SMM	133.693	100.256	0.75	202	0.069	340.658	144.365	0.424	76.28	415.09	235.3	791.4	100.2559138	133.6934098	188.4733717	266.2257137	PW2017T2	0.385714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.074	202	0	0	NA	9qC	chr9-3342997-124127224	2	1	1	0.613	2	NON-ABERRANT	1	0.241435563	sgMsh2	colon
chr8	124003162	124003162	C	T	ENSMUST00000165628.8	1	ENSMUSG00000038697	missense	A/T	263	Taf5l	ENSMUST00000165628.8:c.787G>A	ENSMUSP00000128710.1:p.Ala263Thr	H-2-Kb	9	8	4	CFYTFYNTE	CFYAFYNTE	SMM	80.744	90.388	1.119	120	0.058	377.793	479.773	1.27	801.33	622.77	2423.1	2208.6	90.3878383	80.74395162	158.2158541	132.8158787	PW2017T2	-1.171428571	0.185714286	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.055	120	0	0	NA	8qE2	chr8-3748601-129027388	2	1	1	0.613	2	NON-ABERRANT	1	0.179445351	sgMsh2	colon
chr2	62552302	62552302	T	G	ENSMUST00000102732.9	1	ENSMUSG00000000392	missense	T/P	129	Fap	ENSMUST00000102732.9:c.385A>C	ENSMUSP00000099793.3:p.Thr129Pro	H-2-Db	9	6	6	YSYTAPYYI	YSYTATYYI	NetMHC	93.95	87.42	0.93	184	0.06	240.277	216.621	0.902	87.42	93.95	115.1	111.9	318.1412624	368.6548909	416.4568405	458.7435806	PW2019T1	0.014285714	0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.058	184	0	0	NA	2qC1.3	chr2-4513773-181511691	2	1	1	0.631	2	NON-ABERRANT	1	0.183835182	sgMsh2	colon
chr1	46123657	46123657	TA	T	ENSMUST00000069293.9	5	ENSMUSG00000041144	FS	K/X	388	Dnah7b	ENSMUST00000069293.9:c.1169del	ENSMUSP00000068738.7:p.Lys390SerfsTer23	H-2-Db	9	19	0	RAVPNWTLF	NA	NetMHCpan	101.7	NA	NA	340	0.056	130.408	NA	NA	NA	145.86	NA	101.7	NA	126.363021	NA	134.4528462	PW2019T1	0.585714286	0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0559	340	0	0	NA	1qC1.1	chr1-4867294-193352278	2	2	0	0.631	2	NON-ABERRANT	1	0.177179081	sgMsh2	colon
chr12	91647559	91647559	T	G	ENSMUST00000052969.14	1	ENSMUSG00000020961	missense	S/R	692	Ston2	ENSMUST00000052969.14:c.2074A>C	ENSMUSP00000053908.7:p.Ser692Arg	H-2-Db	9	9	3	AARINGAEV	AASINGAEV	SMM	337.769	205.409	0.608	146	0.062	486.833	208.518	0.428	459.66	892.8	117.1	598.2	205.4092515	337.7691648	211.6264759	375.4654675	PW2019T1	-0.2	0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.074	146	0	0	NA	12qD3	chr12-3237715-119177194	2	1	1	0.631	2	NON-ABERRANT	1	0.234548336	sgMsh2	colon
chr10	8298129	8298129	C	T	ENSMUST00000061601.8	1	ENSMUSG00000047712	missense	R/H	204	Ust	ENSMUST00000061601.8:c.611G>A	ENSMUSP00000052017.7:p.Arg204His	H-2-Kb	8	5	7	SNYFFRHF	SNYFFRRF	NetMHC	9.84	12	1.22	102	0.069	23.308	19.905	0.854	12	9.84	12.6	11.4	27.21071791	35.21599796	27.84453695	35.21599796	PW2019T1	-0.585714286	-0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.073	102	0	0	NA	10qA1	chr10-4453448-130453386	2	1	1	0.631	2	NON-ABERRANT	1	0.231378764	sgMsh2	colon
chr17	23291142	23291142	C	T	ENSMUST00000168033.2	1	ENSMUSG00000091945	missense	C/Y	788	Vmn2r114	ENSMUST00000168033.2:c.2363G>A	ENSMUSP00000127505.1:p.Cys788Tyr	H-2-Kb	8	6	6	SMLVFYSV	SMLVFCSV	NetMHC	13.29	33.24	2.501	544	0.044	59.069	74.295	1.258	33.24	13.29	44.9	41.8	103.6907462	76.33786332	111.8767908	86.44502416	PW2019T1	2.114285714	2.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.043	544	0	0	NA	17qA3.3	chr17-3505882-90208269	2	1	1	0.631	2	NON-ABERRANT	1	0.136291601	sgMsh2	colon
chr10	130075190	130075190	C	T	ENSMUST00000216879.1	5	ENSMUSG00000058251	missense	P/L	260	Olfr822	ENSMUST00000216879.1:c.779C>T	ENSMUSP00000150652.1:p.Pro260Leu	H-2-Kb	8	4	8	CIFMYVKL	CIFMYVKP	NetMHCpan	20.9	4830.1	231.105	492	0.047	23.375	2731.795	116.869	7125.06	22.33	4830.1	20.9	613.3946729	25.33611374	633.4903447	24.41968177	PW2019T1	1.714285714	1.714285714	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.052	492	0	0	NA	10qD3	chr10-4453448-130453386	2	1	1	0.631	2	NON-ABERRANT	1	0.16481775	sgMsh2	colon
chr13	19729390	19729390	TA	T	ENSMUST00000151029.2	1	ENSMUSG00000047462	FS	L/X	164	Gpr141b	ENSMUST00000151029.2:c.491del	ENSMUSP00000158601.1:p.Leu164TyrfsTer30	H-2-Kb	8	24	0	GALSFINL	NA	NetMHC	45.54	NA	NA	145	0.097	60.635	NA	NA	NA	45.54	NA	48.2	NA	92.41447486	NA	73.07015019	PW2019T1	1.771428571	1.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0966	145	0	0	NA	13qA2	chr13-3556909-119495179	2	1	1	0.631	2	NON-ABERRANT	1	0.306180666	sgMsh2	colon
chr12	52181131	52181131	G	A	ENSMUST00000040090.15	1	ENSMUSG00000035142	missense	C/Y	141	Nubpl	ENSMUST00000040090.15:c.422G>A	ENSMUSP00000044292.9:p.Cys141Tyr	H-2-Kb	8	7	5	YGIAYMSM	YGIACMSM	NetMHCpan	60	1690.3	28.172	260	0.023	188.165	3280.693	17.435	4383.25	73.82	1690.3	60	3386.413603	302.5101842	3174.972734	324.8927349	PW2019T1	1.085714286	1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.026	260	0	0	NA	12qC1	chr12-3237715-119177194	2	1	1	0.631	2	NON-ABERRANT	1	0.082408875	sgMsh2	colon
chr12	52181131	52181131	G	A	ENSMUST00000040090.15	1	ENSMUSG00000035142	missense	C/Y	141	Nubpl	ENSMUST00000040090.15:c.422G>A	ENSMUSP00000044292.9:p.Cys141Tyr	H-2-Kb	8	9	3	IAYMSMGF	IACMSMGF	NetMHCpan	47.1	2974.9	63.161	260	0.023	296.085	4497.647	15.19	3869.75	77.25	2974.9	47.1	7206.759014	611.9839043	5125.544401	514.9202839	PW2019T1	0.842857143	1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.026	260	0	0	NA	12qC1	chr12-3237715-119177194	2	1	1	0.631	2	NON-ABERRANT	1	0.082408875	sgMsh2	colon
chr15	85816234	85816234	GT	G	ENSMUST00000064370.5	NA	ENSMUSG00000052496	FS	T/X	1834	Pkdrej	ENSMUST00000064370.5:c.5500del	ENSMUSP00000086352.2:p.Thr1834ProfsTer34	H-2-Kb	8	21	0	FLFSFVPM	NA	NetMHCpan	46.9	NA	NA	161	0.068	53.109	NA	NA	NA	102.81	NA	46.9	NA	58.71377443	NA	47.50507412	PW2019T1	1.871428571	2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.071	161	0	0	NA	15qE2	chr15-3327923-103525164	2	1	1	0.631	2	NON-ABERRANT	1	0.22503962	sgMsh2	colon
chr1	84749166	84749166	GA	G	ENSMUST00000027421.12	5	ENSMUSG00000026219	FS	S/X	1228	Trip12	ENSMUST00000027421.12:c.3682del	ENSMUSP00000027421.6:p.Ser1228LeufsTer13	H-2-Kb	8	8	4	VFFLLHFL	NA	SMM	21.915	NA	NA	120	0.058	57.312	NA	NA	NA	112.2	NA	85.4	NA	21.91492557	NA	29.22402293	PW2019T1	2.371428571	2.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.067	120	0	0	NA	1qC5	chr1-4867294-193352278	2	2	0	0.631	2	NON-ABERRANT	1	0.212361331	sgMsh2	colon
chr13	19729390	19729390	TA	T	ENSMUST00000151029.2	1	ENSMUSG00000047462	FS	L/X	164	Gpr141b	ENSMUST00000151029.2:c.491del	ENSMUSP00000158601.1:p.Leu164TyrfsTer30	H-2-Kb	8	9	3	FFYNMAQI	NA	SMMPMBEC	177.313	NA	NA	145	0.097	194.651	NA	NA	NA	210.76	NA	525.1	NA	178.5418375	NA	177.3127641	PW2019T1	0.385714286	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0966	145	0	0	NA	13qA2	chr13-3556909-119495179	2	1	1	0.631	2	NON-ABERRANT	1	0.306180666	sgMsh2	colon
chr12	52181131	52181131	G	A	ENSMUST00000040090.15	1	ENSMUSG00000035142	missense	C/Y	141	Nubpl	ENSMUST00000040090.15:c.422G>A	ENSMUSP00000044292.9:p.Cys141Tyr	H-2-Kb	8	5	7	LNYGIAYM	LNYGIACM	NetMHCpan	66.7	435.9	6.535	260	0.023	341.65	1379.756	4.039	1466.09	216.92	435.9	66.7	1831.217795	600.8139392	1293.421274	466.380088	PW2019T1	0.242857143	0.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.026	260	0	0	NA	12qC1	chr12-3237715-119177194	2	1	1	0.631	2	NON-ABERRANT	1	0.082408875	sgMsh2	colon
chr1	46123657	46123657	TA	T	ENSMUST00000069293.9	5	ENSMUSG00000041144	FS	K/X	388	Dnah7b	ENSMUST00000069293.9:c.1169del	ENSMUSP00000068738.7:p.Lys390SerfsTer23	H-2-Kb	8	25	0	TLFSTALL	NA	NetMHCpan	162.7	NA	NA	340	0.056	243.602	NA	NA	NA	340.26	NA	162.7	NA	283.6220554	NA	203.5822922	PW2019T1	2.071428571	2.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0559	340	0	0	NA	1qC1.1	chr1-4867294-193352278	2	2	0	0.631	2	NON-ABERRANT	1	0.177179081	sgMsh2	colon
chr16	77075338	77075338	C	A	ENSMUST00000023580.7	1	ENSMUSG00000022867	missense	L/I	426	Usp25	ENSMUST00000023580.7:c.1276C>A	ENSMUSP00000023580.6:p.Leu426Ile	H-2-Kb	8	11	1	ITVLQQRL	LTVLQQRL	SMM	205.466	974.406	4.742	171	0.041	324.987	1554	4.782	2655.6	375.98	1939.2	400.7	974.4061133	205.466016	1168.799454	273.9933359	PW2019T1	-0.057142857	0.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.043	171	0	0	NA	16qC3.1	chr16-3948854-97560961	2	1	1	0.631	2	NON-ABERRANT	1	0.136291601	sgMsh2	colon
chr2	86041667	86041667	CT	C	ENSMUST00000218397.1	5	ENSMUSG00000045392	FS	A/X	117	Olfr1033	ENSMUST00000218397.1:c.354del	ENSMUSP00000151539.1:p.Phe118LeufsTer35	H-2-Kb	8	5	8	FILSVMAL	FILSVMAF	SMM	236.995	3852.477	16.255	613	0.078	390.247	4072.635	10.436	3519.35	438.72	6088.1	1327.3	3852.476516	236.9954455	4292.793522	341.7747702	PW2019T1	2.742857143	2.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.08	613	0	0	NA	2qD	chr2-4513773-181511691	2	1	1	0.631	2	NON-ABERRANT	1	0.253565769	sgMsh2	colon
chr12	105592009	105592009	C	T	ENSMUST00000001652.6	1	ENSMUSG00000021070	missense	R/C	170	Bdkrb2	ENSMUST00000001652.6:c.508C>T	ENSMUSP00000001652.5:p.Arg170Cys	H-2-Kb	8	11	1	CGVRWAKL	RGVRWAKL	NetMHCpan	257.2	289	1.124	140	0.043	408.438	256.255	0.627	223.51	478.34	289	257.2	326.3923717	446.4162552	217.1400833	370.458872	PW2019T1	0.014285714	0.014285714	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.05	140	0	0	NA	12qE	chr12-3237715-119177194	2	1	1	0.631	2	NON-ABERRANT	1	0.158478605	sgMsh2	colon
chr14	55075066	55075066	TC	T	ENSMUST00000036328.8	1	ENSMUSG00000040721	FS	G/X	57	Zfhx2	ENSMUST00000036328.8:c.170del	ENSMUSP00000045156.8:p.Gly57GlufsTer190	H-2-Kb	8	185	0	SAFSAAWV	NA	SMM	290.898	NA	NA	41	0.098	442.426	NA	NA	NA	531.88	NA	576.9	NA	290.8975074	NA	352.9717922	PW2019T1	1.528571429	1.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.121	41	0	0	NA	14qC3	chr14-3072210-123348696	2	1	1	0.631	2	NON-ABERRANT	1	0.383518225	sgMsh2	colon
chr13	19729390	19729390	TA	T	ENSMUST00000151029.2	1	ENSMUSG00000047462	FS	L/X	164	Gpr141b	ENSMUST00000151029.2:c.491del	ENSMUSP00000158601.1:p.Leu164TyrfsTer30	H-2-Kb	8	6	6	LPIFFYNM	LPIFFLQY	SMM	226.851	11905.291	52.481	145	0.097	300.762	12622.045	41.967	18688.34	758.07	13338.8	354.5	11905.29058	226.8506354	6587.793843	247.0244836	PW2019T1	0.8	1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0966	145	0	0	NA	13qA2	chr13-3556909-119495179	2	1	1	0.631	2	NON-ABERRANT	1	0.306180666	sgMsh2	colon
chr1	84749166	84749166	GA	G	ENSMUST00000027421.12	5	ENSMUSG00000026219	FS	S/X	1228	Trip12	ENSMUST00000027421.12:c.3682del	ENSMUSP00000027421.6:p.Ser1228LeufsTer13	H-2-Kb	8	5	7	FLHVFFLL	FLHVFFSS	SMMPMBEC	186.526	2557.055	13.709	120	0.058	463.546	4250.927	9.17	11015.33	760.34	5944.8	686.8	2481.646968	240.2923806	2557.054591	186.5262676	PW2019T1	2.571428571	2.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.067	120	0	0	NA	1qC5	chr1-4867294-193352278	2	2	0	0.631	2	NON-ABERRANT	1	0.212361331	sgMsh2	colon
chr14	55075066	55075066	TC	T	ENSMUST00000036328.8	1	ENSMUSG00000040721	FS	G/X	57	Zfhx2	ENSMUST00000036328.8:c.170del	ENSMUSP00000045156.8:p.Gly57GlufsTer190	H-2-Kb	8	51	0	RSFLWTSA	NA	NetMHCpan	291.6	NA	NA	41	0.098	443.818	NA	NA	NA	920.47	NA	291.6	NA	535.475987	NA	352.1599796	PW2019T1	0.742857143	0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.121	41	0	0	NA	14qC3	chr14-3072210-123348696	2	1	1	0.631	2	NON-ABERRANT	1	0.383518225	sgMsh2	colon
chr12	52181131	52181131	G	A	ENSMUST00000040090.15	1	ENSMUSG00000035142	missense	C/Y	141	Nubpl	ENSMUST00000040090.15:c.422G>A	ENSMUSP00000044292.9:p.Cys141Tyr	H-2-Kb	9	9	3	IAYMSMGFL	IACMSMGFL	NetMHCpan	20.3	1074.5	52.931	260	0.023	78.988	1242.43	15.729	1410.36	31.72	1074.5	20.3	1862.558834	163.3465627	906.2541326	126.255411	PW2019T1	1.128571429	1.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.026	260	0	0	NA	12qC1	chr12-3237715-119177194	2	1	1	0.631	2	NON-ABERRANT	1	0.082408875	sgMsh2	colon
chr10	8298129	8298129	C	T	ENSMUST00000061601.8	1	ENSMUSG00000047712	missense	R/H	204	Ust	ENSMUST00000061601.8:c.611G>A	ENSMUSP00000052017.7:p.Arg204His	H-2-Kb	9	4	8	LSNYFFRHF	LSNYFFRRF	NetMHC	56.53	56.6	1.001	102	0.069	135.479	135.301	0.999	56.6	56.53	112.8	100.7	157.8010905	170.2589693	178.3405083	200.1013414	PW2019T1	-0.585714286	-0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.073	102	0	0	NA	10qA1	chr10-4453448-130453386	2	1	1	0.631	2	NON-ABERRANT	1	0.231378764	sgMsh2	colon
chr14	55075066	55075066	TC	T	ENSMUST00000036328.8	1	ENSMUSG00000040721	FS	G/X	57	Zfhx2	ENSMUST00000036328.8:c.170del	ENSMUSP00000045156.8:p.Gly57GlufsTer190	H-2-Kb	9	18	0	VTLTHQRRL	NA	NetMHC	70.24	NA	NA	41	0.098	147.095	NA	NA	NA	70.24	NA	86.1	NA	217.8261422	NA	208.0894201	PW2019T1	-1.257142857	-0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.121	41	0	0	NA	14qC3	chr14-3072210-123348696	2	1	1	0.631	2	NON-ABERRANT	1	0.383518225	sgMsh2	colon
chr13	19729390	19729390	TA	T	ENSMUST00000151029.2	1	ENSMUSG00000047462	FS	L/X	164	Gpr141b	ENSMUST00000151029.2:c.491del	ENSMUSP00000158601.1:p.Leu164TyrfsTer30	H-2-Kb	9	23	0	SGALSFINL	NA	NetMHC	74.88	NA	NA	145	0.097	344.071	NA	NA	NA	74.88	NA	93.7	NA	594.4427026	NA	745.1607995	PW2019T1	1.771428571	1.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0966	145	0	0	NA	13qA2	chr13-3556909-119495179	2	1	1	0.631	2	NON-ABERRANT	1	0.306180666	sgMsh2	colon
chr14	55075066	55075066	TC	T	ENSMUST00000036328.8	1	ENSMUSG00000040721	FS	G/X	57	Zfhx2	ENSMUST00000036328.8:c.170del	ENSMUSP00000045156.8:p.Gly57GlufsTer190	H-2-Kb	9	57	0	SAATYSSQL	NA	NetMHC	77.65	NA	NA	41	0.098	167.748	NA	NA	NA	77.65	NA	130.8	NA	204.6963035	NA	229.7470798	PW2019T1	-0.214285714	-0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.121	41	0	0	NA	14qC3	chr14-3072210-123348696	2	1	1	0.631	2	NON-ABERRANT	1	0.383518225	sgMsh2	colon
chr13	19729390	19729390	TA	T	ENSMUST00000151029.2	1	ENSMUSG00000047462	FS	L/X	164	Gpr141b	ENSMUST00000151029.2:c.491del	ENSMUSP00000158601.1:p.Leu164TyrfsTer30	H-2-Kb	9	8	4	IFFYNMAQI	NA	NetMHC	97.59	NA	NA	145	0.097	209.159	NA	NA	NA	97.59	NA	215.9	NA	300.6837791	NA	202.4184057	PW2019T1	0.385714286	1.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0966	145	0	0	NA	13qA2	chr13-3556909-119495179	2	1	1	0.631	2	NON-ABERRANT	1	0.306180666	sgMsh2	colon
chr18	60245759	60245759	GT	G	ENSMUST00000031549.5	1	ENSMUSG00000073555	FS	V/X	122	Gm4951	ENSMUST00000031549.5:c.370del	ENSMUSP00000031549.5:p.Trp124GlyfsTer20	H-2-Kb	9	10	4	VVFGTCLGL	NA	NetMHC	98.47	NA	NA	113	0.106	134.186	NA	NA	NA	98.47	NA	128.7	NA	139.6722084	NA	191.9773533	PW2019T1	1.628571429	2.342857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.107	113	0	0	NA	18qD3	chr18-3325290-84965412	2	1	1	0.631	2	NON-ABERRANT	1	0.339144216	sgMsh2	colon
chr16	17258565	17258565	AG	A	ENSMUST00000090190.13	1	ENSMUSG00000050240	FS	E/X	419	Hic2	ENSMUST00000090190.13:c.1262del	ENSMUSP00000087656.5:p.Gly421AlafsTer113	H-2-Kb	9	35	0	TMFMCASPV	NA	NetMHCpan	75.2	NA	NA	61	0.082	149.577	NA	NA	NA	103.67	NA	75.2	NA	195.4834522	NA	195.5464788	PW2019T1	1.542857143	1.542857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.1	61	0	0	NA	16qA3	chr16-3948854-97560961	2	1	1	0.631	2	NON-ABERRANT	1	0.316957211	sgMsh2	colon
chr17	23291142	23291142	C	T	ENSMUST00000168033.2	1	ENSMUSG00000091945	missense	C/Y	788	Vmn2r114	ENSMUST00000168033.2:c.2363G>A	ENSMUSP00000127505.1:p.Cys788Tyr	H-2-Kb	9	6	6	SMLVFYSVW	SMLVFCSVW	SMMPMBEC	96.661	419.035	4.335	544	0.044	106.927	536.521	5.018	560.05	104.43	1689.5	393.4	512.9913002	109.4233483	419.0347115	96.66071427	PW2019T1	1.714285714	2.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.043	544	0	0	NA	17qA3.3	chr17-3505882-90208269	2	1	1	0.631	2	NON-ABERRANT	1	0.136291601	sgMsh2	colon
chr12	51623268	51623268	GT	G	ENSMUST00000013130.14	1	ENSMUSG00000020954	FS	N/X	598	Strn3	ENSMUST00000013130.14:c.1793del	ENSMUSP00000013130.8:p.Asn598ThrfsTer42	H-2-Kb	9	41	0	RNMEYLHQL	NA	NetMHCpan	48.5	NA	NA	121	0.107	201.505	NA	NA	NA	114.44	NA	48.5	NA	324.4217779	NA	288.5692163	PW2019T1	-0.285714286	-0.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.098	121	0	0	NA	12qB3	chr12-3237715-119177194	2	1	1	0.631	2	NON-ABERRANT	1	0.310618067	sgMsh2	colon
chr15	85816234	85816234	GT	G	ENSMUST00000064370.5	NA	ENSMUSG00000052496	FS	T/X	1834	Pkdrej	ENSMUST00000064370.5:c.5500del	ENSMUSP00000086352.2:p.Thr1834ProfsTer34	H-2-Kb	9	21	0	FLFSFVPML	NA	NetMHCpan	112.8	NA	NA	161	0.068	186.192	NA	NA	NA	121.71	NA	112.8	NA	250.6744092	NA	301.4740949	PW2019T1	1.871428571	2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.071	161	0	0	NA	15qE2	chr15-3327923-103525164	2	1	1	0.631	2	NON-ABERRANT	1	0.22503962	sgMsh2	colon
chr13	19729390	19729390	TA	T	ENSMUST00000151029.2	1	ENSMUSG00000047462	FS	L/X	164	Gpr141b	ENSMUST00000151029.2:c.491del	ENSMUSP00000158601.1:p.Leu164TyrfsTer30	H-2-Kb	9	5	7	FLPIFFYNM	FLPIFFLQY	NetMHC	139.72	8142.1	58.274	145	0.097	404.613	4719.804	11.665	8142.1	139.72	9057.2	287.9	1297.507868	521.3267383	1205.729815	641.5787927	PW2019T1	0.8	1.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0966	145	0	0	NA	13qA2	chr13-3556909-119495179	2	1	1	0.631	2	NON-ABERRANT	1	0.306180666	sgMsh2	colon
chr12	51623268	51623268	GT	G	ENSMUST00000013130.14	1	ENSMUSG00000020954	FS	N/X	598	Strn3	ENSMUST00000013130.14:c.1793del	ENSMUSP00000013130.8:p.Asn598ThrfsTer42	H-2-Kb	9	11	1	TNYSLAQQM	NA	NetMHC	148.92	NA	NA	121	0.107	196.867	NA	NA	NA	148.92	NA	198.7	NA	195.0338527	NA	222.4590099	PW2019T1	-0.228571429	-0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.098	121	0	0	NA	12qB3	chr12-3237715-119177194	2	1	1	0.631	2	NON-ABERRANT	1	0.310618067	sgMsh2	colon
chr19	29716552	29716552	G	T	ENSMUST00000175726.7	5	ENSMUSG00000046138	missense	P/H	1792	9930021J03Rik	ENSMUST00000175726.7:c.5374C>A	ENSMUSP00000135696.1:p.Pro1792His	H-2-Kb	9	4	8	TNPKYGPHL	TNPKYGPPL	NetMHC	187.65	108.57	0.579	196	0.056	350.055	244.701	0.699	108.57	187.65	131.1	220.1	395.4667729	529.7976163	358.3026333	480.0096849	PW2019T1	-1.171428571	-1.171428571	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Strelka2;MuSe;Vardict	4	0.066	196	0	0	NA	19qC1	chr19-4352434-60987573	2	1	1	0.631	2	NON-ABERRANT	1	0.209191759	sgMsh2	colon
chr15	85816234	85816234	GT	G	ENSMUST00000064370.5	NA	ENSMUSG00000052496	FS	T/X	1834	Pkdrej	ENSMUST00000064370.5:c.5500del	ENSMUSP00000086352.2:p.Thr1834ProfsTer34	H-2-Kb	9	17	0	STPPFLFSF	NA	NetMHCpan	160.7	NA	NA	161	0.068	354.728	NA	NA	NA	220.68	NA	160.7	NA	488.776143	NA	759.0143731	PW2019T1	1.171428571	1.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.071	161	0	0	NA	15qE2	chr15-3327923-103525164	2	1	1	0.631	2	NON-ABERRANT	1	0.22503962	sgMsh2	colon
chr2	62552302	62552302	T	G	ENSMUST00000102732.9	1	ENSMUSG00000000392	missense	T/P	129	Fap	ENSMUST00000102732.9:c.385A>C	ENSMUSP00000099793.3:p.Thr129Pro	H-2-Kb	9	9	3	TAPYYIYDL	TATYYIYDL	NetMHCpan	141.3	628.9	4.451	184	0.06	403.889	741.066	1.835	745.5	229.35	628.9	141.3	845.4929682	615.3327071	736.6310144	578.428922	PW2019T1	-0.1	0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.058	184	0	0	NA	2qC1.3	chr2-4513773-181511691	2	1	1	0.631	2	NON-ABERRANT	1	0.183835182	sgMsh2	colon
chr10	121615116	121615116	CA	C	ENSMUST00000039810.7	5	ENSMUSG00000034667	FS	F/X	126	Xpot	ENSMUST00000039810.7:c.378del	ENSMUSP00000043488.7:p.Phe126LeufsTer9	H-2-Kb	9	8	4	KFFLTSSQL	NA	NetMHC	253.95	NA	NA	168	0.077	400.763	NA	NA	NA	253.95	NA	453.1	NA	348.4255546	NA	544.816184	PW2019T1	0.657142857	0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0774	168	0	0	NA	10qD2	chr10-4453448-130453386	2	1	1	0.631	2	NON-ABERRANT	1	0.245324881	sgMsh2	colon
chr19	39703466	39703466	A	AT	ENSMUST00000099472.3	1	ENSMUSG00000074882	FS	-/X	337-338	Cyp2c68	ENSMUST00000099472.3:c.1011_1012insA	ENSMUSP00000097071.3:p.Cys338MetfsTer17	H-2-Kb	9	4	9	VIGRHRSPM	VIGRHRSPC	SMM	207.067	1596.283	7.709	309	0.081	240.546	2688.012	11.175	3779.74	265.69	8064.8	1275.3	1596.28341	207.066575	1127.84651	215.4021332	PW2019T1	-1.871428571	-0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.084	309	0	0	NA	19qC3	chr19-4352434-60987573	2	1	1	0.631	2	NON-ABERRANT	1	0.266244057	sgMsh2	colon
chr17	23291142	23291142	C	T	ENSMUST00000168033.2	1	ENSMUSG00000091945	missense	C/Y	788	Vmn2r114	ENSMUST00000168033.2:c.2363G>A	ENSMUSP00000127505.1:p.Cys788Tyr	H-2-Kb	9	9	3	VFYSVWVTF	VFCSVWVTF	SMM	130.35	1486.312	11.402	544	0.044	226.503	1729.916	7.638	1973.52	296.24	3836.3	698	1486.312054	130.3496892	1125.252535	156.7653224	PW2019T1	1.071428571	1.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.043	544	0	0	NA	17qA3.3	chr17-3505882-90208269	2	1	1	0.631	2	NON-ABERRANT	1	0.136291601	sgMsh2	colon
chr2	73343630	73343630	AC	A	ENSMUST00000076463.11	1	ENSMUSG00000041762	FS	V/X	812	Gpr155	ENSMUST00000076463.11:c.2434del	ENSMUSP00000075788.5:p.Val812SerfsTer34	H-2-Kb	9	23	0	TSISFTDSF	NA	NetMHC	298.96	NA	NA	159	0.069	460.766	NA	NA	NA	298.96	NA	655.4	NA	418.8996524	NA	502.6318444	PW2019T1	0.614285714	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.071	159	0	0	NA	2qC3	chr2-4513773-181511691	2	1	1	0.631	2	NON-ABERRANT	1	0.22503962	sgMsh2	colon
chr13	13743326	13743326	A	G	ENSMUST00000110559.2	1	ENSMUSG00000019726	missense	I/V	3324	Lyst	ENSMUST00000110559.2:c.9970A>G	ENSMUSP00000106188.1:p.Ile3324Val	H-2-Kb	9	10	2	FVLIHRQAL	FILIHRQAL	NetMHC	332.65	332.93	1.001	200	0.035	444.817	456.23	1.026	332.93	332.65	834.9	732.5	458.2579416	443.7210173	454.2030017	445.9128626	PW2019T1	0.385714286	0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.034	200	0	0	NA	13qA1	chr13-3556909-119495179	2	1	1	0.631	2	NON-ABERRANT	1	0.107765452	sgMsh2	colon
chr2	86041667	86041667	CT	C	ENSMUST00000218397.1	5	ENSMUSG00000045392	FS	A/X	117	Olfr1033	ENSMUST00000218397.1:c.354del	ENSMUSP00000151539.1:p.Phe118LeufsTer35	H-2-Kb	9	30	0	GWFAFDSFL	NA	SMM	159.628	NA	NA	613	0.078	294.115	NA	NA	NA	347.1	NA	402.5	NA	159.628341	NA	241.1293081	PW2019T1	1.385714286	1.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.08	613	0	0	NA	2qD	chr2-4513773-181511691	2	1	1	0.631	2	NON-ABERRANT	1	0.253565769	sgMsh2	colon
chr12	105592009	105592009	C	T	ENSMUST00000001652.6	1	ENSMUSG00000021070	missense	R/C	170	Bdkrb2	ENSMUST00000001652.6:c.508C>T	ENSMUSP00000001652.5:p.Arg170Cys	H-2-Kb	9	5	7	MSMGRMCGV	MSMGRMRGV	NetMHC	403.08	618.57	1.535	140	0.043	468.63	607.192	1.296	618.57	403.08	770.7	513	595.8130345	480.961153	589.1827186	456.2995075	PW2019T1	0.742857143	0.742857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.05	140	0	0	NA	12qE	chr12-3237715-119177194	2	1	1	0.631	2	NON-ABERRANT	1	0.158478605	sgMsh2	colon
chr10	11170288	11170288	AT	A	ENSMUST00000044053.12	1	ENSMUSG00000090112	FS	H/X	916	Shprh	ENSMUST00000044053.12:c.2752del	ENSMUSP00000039422.6:p.Ser918ProfsTer20	H-2-Kb	9	10	4	LHFPRWRGI	NA	NetMHC	436.42	NA	NA	137	0.051	467.315	NA	NA	NA	436.42	NA	543.1	NA	497.86317	NA	436.7671833	PW2019T1	-0.657142857	-0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.056	137	0	0	NA	10qA1	chr10-4453448-130453386	2	1	1	0.631	2	NON-ABERRANT	1	0.177496038	sgMsh2	colon
chr10	130075190	130075190	C	T	ENSMUST00000216879.1	5	ENSMUSG00000058251	missense	P/L	260	Olfr822	ENSMUST00000216879.1:c.779C>T	ENSMUSP00000150652.1:p.Pro260Leu	H-2-Kb	9	3	9	SCIFMYVKL	SCIFMYVKP	SMMPMBEC	150.055	1104.714	7.362	492	0.047	260.47	7148.016	27.443	12940.5	460.46	17760	227.1	1355.532704	293.8393807	1104.714362	150.0548372	PW2019T1	1.714285714	1.971428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.052	492	0	0	NA	10qD3	chr10-4453448-130453386	2	1	1	0.631	2	NON-ABERRANT	1	0.16481775	sgMsh2	colon
chr2	48898564	48898564	TA	T	ENSMUST00000063886.3	1	ENSMUSG00000052155	FS	K/X	435	Acvr2a	ENSMUST00000063886.3:c.1310del	ENSMUSP00000067305.3:p.Lys437ArgfsTer5	H-2-Kb	9	8	6	VVHKKRGLF	VVHKKKRPV	SMM	417.936	621.026	1.486	185	0.157	493.429	698.682	1.416	685.74	546.05	4295.7	2279.7	621.0263106	417.9362099	711.6230389	440.8085403	PW2019T1	-1.328571429	-1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1568	185	0	0	NA	2qC1.1	chr2-4513773-181511691	2	1	1	0.631	2	NON-ABERRANT	1	0.496988906	sgMsh2	colon
chr10	8298129	8298129	C	T	ENSMUST00000061601.8	1	ENSMUSG00000047712	missense	R/H	204	Ust	ENSMUST00000061601.8:c.611G>A	ENSMUSP00000052017.7:p.Arg204His	H-2-Kb	9	5	7	SNYFFRHFG	SNYFFRRFG	NetMHCpan	139.1	197.8	1.422	102	0.069	458.411	496.68	1.083	570.73	1012.21	197.8	139.1	475.4556362	449.8937915	517.9048762	466.9280884	PW2019T1	-0.142857143	-0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.073	102	0	0	NA	10qA1	chr10-4453448-130453386	2	1	1	0.631	2	NON-ABERRANT	1	0.231378764	sgMsh2	colon
chr9	80136750	80136750	GA	G	ENSMUST00000165607.8	1	ENSMUSG00000034252	FS	K/X	888	Senp6	ENSMUST00000165607.8:c.2672del	ENSMUSP00000126777.2:p.Asn891IlefsTer44	H-2-Db	9	42	0	ASGMNASVL	NA	NetMHC	36.8	NA	NA	148	0.149	141.593	NA	NA	NA	36.8	NA	75.9	NA	216.0827011	NA	207.2860138	PW2019T1	1	1	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1486	148	0	0	NA	9qE1	chr9-3342997-123664738	2	1	1	0.631	2	NON-ABERRANT	1	0.470998415	sgMsh2	colon
chr3	103736051	103736051	C	T	ENSMUST00000029440.9	1	ENSMUSG00000027848	missense	R/H	338	Olfml3	ENSMUST00000029440.9:c.1013G>A	ENSMUSP00000029440.8:p.Arg338His	H-2-Db	9	5	7	YVVYNTHPA	YVVYNTRPA	NetMHC	197.61	2287.86	11.578	176	0.062	301.104	1101.927	3.66	2287.86	197.61	1421.2	416.4	512.4128356	257.4067907	782.6543439	344.8021776	PW2019T1	-0.614285714	-0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.072	176	0	0	NA	3qF2.2	chr3-8935052-159911278	2	1	1	0.631	2	NON-ABERRANT	1	0.228209192	sgMsh2	colon
chr2	89406966	89406966	C	T	ENSMUST00000217237.1	5	ENSMUSG00000111517	missense	V/M	38	Olfr1238	ENSMUST00000217237.1:c.112G>A	ENSMUSP00000150367.1:p.Val38Met	H-2-Db	9	9	3	TMMGNLLIV	TMVGNLLIV	NetMHCpan	209.6	636.3	3.036	312	0.09	355.308	624.763	1.758	1029.62	525.33	636.3	209.6	613.2252091	357.7832461	566.982951	352.8336521	PW2019T1	2.042857143	2.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.101	312	0	0	NA	2qE1	chr2-4513773-181511691	2	1	1	0.631	2	NON-ABERRANT	1	0.320126783	sgMsh2	colon
chr7	62379763	62379763	AG	A	ENSMUST00000080403.6	NA	ENSMUSG00000056972	FS	R/X	805	Magel2	ENSMUST00000080403.6:c.2419del	ENSMUSP00000079265.5:p.Ala807HisfsTer67	H-2-Db	9	47	0	SSLPLLMPL	NA	SMM	243.568	NA	NA	92	0.109	496.602	NA	NA	NA	725.17	NA	662.4	NA	243.567871	NA	330.803427	PW2019T1	1.985714286	1.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.117	92	0	0	NA	7qC	chr7-4554068-143880979	2	1	1	0.631	2	NON-ABERRANT	1	0.370839937	sgMsh2	colon
chr7	102954991	102954991	CA	C	ENSMUST00000084812.2	NA	ENSMUSG00000066269	FS	F/X	210	Olfr575	ENSMUST00000084812.2:c.630del	ENSMUSP00000081873.2:p.Phe210LeufsTer6	H-2-Kb	8	4	8	VNFFYGFL	VNFFYGFF	SMM	2.191	35.624	16.255	173	0.064	2.799	33.268	11.887	31.4	4	12.8	2.8	35.62377999	2.191492557	35.13500341	2.797306149	PW2019T1	1	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.074	173	0	0	NA	7qE3	chr7-4554068-143880979	2	1	1	0.631	2	NON-ABERRANT	1	0.234548336	sgMsh2	colon
chr2	89170901	89170901	G	A	ENSMUST00000217054.1	5	ENSMUSG00000101918	missense	H/Y	104	Olfr1225	ENSMUST00000217054.1:c.310C>T	ENSMUSP00000150915.1:p.His104Tyr	H-2-Kb	8	9	3	AVYFFTGM	AVHFFTGM	NetMHCpan	4.9	24.4	4.98	485	0.023	17.977	204.404	11.37	108.38	6.46	24.4	4.9	365.3759857	31.02701531	300.4277187	29.49442949	PW2019T1	1.328571429	1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.025	485	0	0	NA	2qE1	chr2-4513773-181511691	2	1	1	0.631	2	NON-ABERRANT	1	0.079239303	sgMsh2	colon
chr2	86639395	86639395	GA	G	ENSMUST00000216851.1	NA	ENSMUSG00000110804	FS	F/X	104	Olfr1084	ENSMUST00000216851.1:c.312del	ENSMUSP00000150546.1:p.Leu105PhefsTer40	H-2-Kb	8	8	5	LAFFFCSL	LAFFLLFI	NetMHCpan	6.7	938	140	368	0.046	14.734	1029.24	69.854	1873.54	15.62	938	6.7	1065.957771	15.02242346	992.5216755	14.44574685	PW2019T1	2.242857143	2.242857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.049	368	0	0	NA	2qD	chr2-4513773-181511691	2	1	1	0.631	2	NON-ABERRANT	1	0.155309033	sgMsh2	colon
chr9	27334216	27334216	CG	C	ENSMUST00000133213.2	5	ENSMUSG00000034275	FS	G/X	1156	Igsf9b	ENSMUST00000133213.2:c.3471del	ENSMUSP00000117017.1:p.His1158MetfsTer47	H-2-Kb	8	47	0	IKWCYSPL	NA	SMMPMBEC	20.358	NA	NA	46	0.109	24.989	NA	NA	NA	27.24	NA	68.8	NA	22.73735801	NA	20.35822922	PW2019T1	-0.314285714	-0.214285714	FALSE	FALSE	FALSE	1	FALSE	0	Strelka2;Vardict	2	0.1087	46	0	0	NA	9qA4	chr9-3342997-123664738	2	1	1	0.631	2	NON-ABERRANT	1	0.344532488	sgMsh2	colon
chr4	118391252	118391252	C	T	ENSMUST00000075406.11	1	ENSMUSG00000033253	missense	R/H	654	Szt2	ENSMUST00000075406.11:c.1961G>A	ENSMUSP00000074862.5:p.Arg654His	H-2-Kb	8	5	7	SSFYMVHI	SSFYMVRI	NetMHCpan	20	22.8	1.14	132	0.235	78.24	69.403	0.887	41.14	32.96	22.8	20	116.611129	150.9176382	97.66523514	123.5207728	PW2019T1	1.157142857	1.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.193	132	0	0	NA	4qD2.1	chr4-3973093-156200568	2	1	1	0.631	2	NON-ABERRANT	1	0.611727417	sgMsh2	colon
chr2	86639395	86639395	GA	G	ENSMUST00000216851.1	NA	ENSMUSG00000110804	FS	F/X	104	Olfr1084	ENSMUST00000216851.1:c.312del	ENSMUSP00000150546.1:p.Leu105PhefsTer40	H-2-Kb	8	29	0	AMWPYVSL	NA	NetMHCpan	28	NA	NA	368	0.046	53.393	NA	NA	NA	33.21	NA	28	NA	82.74466462	NA	73.57664827	PW2019T1	0.757142857	0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.049	368	0	0	NA	2qD	chr2-4513773-181511691	2	1	1	0.631	2	NON-ABERRANT	1	0.155309033	sgMsh2	colon
chr2	164989016	164989016	TG	T	ENSMUST00000099092.7	1	ENSMUSG00000017740	FS	W/X	641	Slc12a5	ENSMUST00000099092.7:c.1927del	ENSMUSP00000096690.4:p.Asp643MetfsTer52	H-2-Kb	8	19	0	LSVQHAML	NA	NetMHC	37.78	NA	NA	53	0.075	75.969	NA	NA	NA	37.78	NA	115.9	NA	79.2027024	NA	72.73442335	PW2019T1	0.6	0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.101	53	0	0	NA	2qH3	chr2-4513773-181511691	2	1	1	0.631	2	NON-ABERRANT	1	0.320126783	sgMsh2	colon
chr4	114408965	114408965	G	A	ENSMUST00000094894.3	5	ENSMUSG00000070867	missense	V/I	59	Trabd2b	ENSMUST00000094894.3:c.175G>A	ENSMUSP00000092494.3:p.Val59Ile	H-2-Kb	8	9	3	IHIPYTRV	IHVPYTRV	NetMHC	58.38	142.85	2.447	53	0.113	128.519	246.068	1.915	142.85	58.38	243.4	126.8	248.7367755	130.2386842	275.2580317	149.534017	PW2019T1	-0.371428571	-0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.116	53	0	0	NA	4qD1	chr4-3973093-156200568	2	1	1	0.631	2	NON-ABERRANT	1	0.367670365	sgMsh2	colon
chr7	120932233	120932233	C	A	ENSMUST00000033173.14	1	ENSMUSG00000030880	missense	L/M	208	Polr3e	ENSMUST00000033173.14:c.622C>A	ENSMUSP00000033173.7:p.Leu208Met	H-2-Kb	8	9	3	VHMHYYGM	VHLHYYGM	NetMHCpan	54.1	78.4	1.449	70	0.143	127.786	100.96	0.79	65.47	70.33	78.4	54.1	123.5207728	212.1973715	140.5206015	185.2422298	PW2019T1	-0.8	-0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.129	70	0	0	NA	7qF2	chr7-4554068-143880979	2	1	1	0.631	2	NON-ABERRANT	1	0.408874802	sgMsh2	colon
chr8	4213327	4213327	AG	A	ENSMUST00000168386.8	5	ENSMUSG00000064125	FS	L/X	780	Prr36	ENSMUST00000168386.8:c.2338del	ENSMUSP00000133114.2:p.Leu780TyrfsTer18	H-2-Kb	8	17	0	FYLLYRPL	NA	SMM	73.407	NA	NA	67	0.134	74.034	NA	NA	NA	73.81	NA	101.2	NA	73.40742668	NA	74.25744462	PW2019T1	0.385714286	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.13	67	0	0	NA	8qA1.1	chr8-3194938-127409529	2	1	1	0.631	2	NON-ABERRANT	1	0.412044374	sgMsh2	colon
chr9	3458845	3458845	C	T	ENSMUST00000027027.6	1	ENSMUSG00000025898	missense	P/S	765	Cwf19l2	ENSMUST00000027027.6:c.2293C>T	ENSMUSP00000027027.5:p.Pro765Ser	H-2-Kb	8	5	7	MVYECISL	MVYECIPL	NetMHCpan	55.7	38.8	0.697	178	0.067	80.777	40.424	0.5	27.46	74.31	38.8	55.7	42.24156501	87.24489012	42.04748265	88.05215715	PW2019T1	1.342857143	1.342857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.083	178	0	0	NA	9qA1	chr9-3342997-123664738	2	1	1	0.631	2	NON-ABERRANT	1	0.263074485	sgMsh2	colon
chr5	147539307	147539307	C	T	ENSMUST00000031651.14	5	ENSMUSG00000029647	missense	R/W	698	Pan3	ENSMUST00000031651.14:c.2092C>T	ENSMUSP00000031651.8:p.Arg698Trp	H-2-Kb	8	9	3	GAWFYTQL	GARFYTQL	NetMHCpan	33	157.1	4.761	238	0.021	120.156	355.521	2.959	457.4	146.18	157.1	33	407.1364636	172.480499	303.9065077	94.13258822	PW2019T1	0.285714286	0.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.027	238	0	0	NA	5qG3	chr5-3673201-150478141	2	1	1	0.631	2	NON-ABERRANT	1	0.085578447	sgMsh2	colon
chr2	89406966	89406966	C	T	ENSMUST00000217237.1	5	ENSMUSG00000111517	missense	V/M	38	Olfr1238	ENSMUST00000217237.1:c.112G>A	ENSMUSP00000150367.1:p.Val38Met	H-2-Kb	8	7	5	IVTMMGNL	IVTMVGNL	NetMHC	147.94	313.94	2.122	312	0.09	192.534	316.819	1.646	313.94	147.94	329.8	189.3	319.6980594	236.4503711	292.9139126	195.7672319	PW2019T1	1.028571429	1.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.101	312	0	0	NA	2qE1	chr2-4513773-181511691	2	1	1	0.631	2	NON-ABERRANT	1	0.320126783	sgMsh2	colon
chr7	139845658	139845658	C	T	ENSMUST00000026548.13	1	ENSMUSG00000025475	missense	A/V	29	Adgra1	ENSMUST00000026548.13:c.86C>T	ENSMUSP00000026548.7:p.Ala29Val	H-2-Kb	8	11	1	VVMLLCLL	AVMLLCLL	NetMHCpan	105.3	378.8	3.597	35	0.086	193.844	794.078	4.096	855.77	174.02	378.8	105.3	983.422182	261.0597994	732.3859428	213.6682534	PW2019T1	3.4	3.457142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.116	35	0	0	NA	7qF4	chr7-4554068-143880979	2	1	1	0.631	2	NON-ABERRANT	1	0.367670365	sgMsh2	colon
chr4	148500244	148500244	T	C	ENSMUST00000030840.3	1	ENSMUSG00000028989	missense	S/G	16	Angptl7	ENSMUST00000030840.3:c.46A>G	ENSMUSP00000030840.3:p.Ser16Gly	H-2-Kb	8	7	5	VAFVGHPV	VAFVSHPV	NetMHCpan	96.8	52.2	0.539	63	0.111	186.848	84.193	0.451	70.27	209	52.2	96.8	98.11603738	203.5822922	117.4194387	170.1139779	PW2019T1	1.114285714	1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.125	63	0	0	NA	4qE2	chr4-3973093-156200568	2	1	1	0.631	2	NON-ABERRANT	1	0.396196513	sgMsh2	colon
chr7	139845658	139845658	C	T	ENSMUST00000026548.13	1	ENSMUSG00000025475	missense	A/V	29	Adgra1	ENSMUST00000026548.13:c.86C>T	ENSMUSP00000026548.7:p.Ala29Val	H-2-Kb	8	5	7	VVYACTVV	VVYACTAV	NetMHCpan	165.1	69	0.418	35	0.086	184.604	73.738	0.399	37.28	227.83	69	165.1	78.47656766	184.8161845	81.98605697	184.391119	PW2019T1	2.128571429	2.128571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.116	35	0	0	NA	7qF4	chr7-4554068-143880979	2	1	1	0.631	2	NON-ABERRANT	1	0.367670365	sgMsh2	colon
chr3	87913145	87913145	CT	C	ENSMUST00000005017.14	1	ENSMUSG00000004897	FS	F/X	48	Hdgf	ENSMUST00000005017.14:c.150del	ENSMUSP00000005017.8:p.Phe50LeufsTer91	H-2-Kb	8	9	5	QVFFLGPM	QVFFFGTH	NetMHCpan	133.5	6279.1	47.034	144	0.125	329.335	4621.078	14.032	8076.13	242.05	6279.1	133.5	2963.056959	416.6198901	1332.723329	491.7450535	PW2019T1	1.928571429	1.928571429	TRUE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.125	144	0	0	NA	3qF1	chr3-8935052-159911278	2	1	1	0.631	2	NON-ABERRANT	1	0.396196513	sgMsh2	colon
chr2	89406966	89406966	C	T	ENSMUST00000217237.1	5	ENSMUSG00000111517	missense	V/M	38	Olfr1238	ENSMUST00000217237.1:c.112G>A	ENSMUSP00000150367.1:p.Val38Met	H-2-Kb	8	4	8	LIYIVTMM	LIYIVTMV	NetMHC	242.7	327.85	1.351	312	0.09	438.175	408.153	0.931	327.85	242.7	1200.7	442.1	387.0258739	434.2501729	429.2793522	464.2372661	PW2019T1	2.142857143	2.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.101	312	0	0	NA	2qE1	chr2-4513773-181511691	2	1	1	0.631	2	NON-ABERRANT	1	0.320126783	sgMsh2	colon
chr2	153399446	153399446	AG	A	ENSMUST00000109790.1	5	ENSMUSG00000042548	FS	G/X	640	Asxl1	ENSMUST00000109790.1:c.1925del	ENSMUSP00000105413.1:p.Gly642ValfsTer58	H-2-Kb	8	33	0	VVMVVRPV	NA	NetMHC	253.25	NA	NA	90	0.267	329.794	NA	NA	NA	253.25	NA	280.5	NA	467.4552051	NA	379.0879676	PW2019T1	1.8	1.8	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2667	90	0	0	NA	2qH1	chr2-4513773-181511691	2	1	1	0.631	2	NON-ABERRANT	1	0.845324881	sgMsh2	colon
chr2	153399446	153399446	AG	A	ENSMUST00000109790.1	5	ENSMUSG00000042548	FS	G/X	640	Asxl1	ENSMUST00000109790.1:c.1925del	ENSMUSP00000105413.1:p.Gly642ValfsTer58	H-2-Kb	8	36	0	VVRPVATL	NA	SMM	210.737	NA	NA	90	0.267	296.367	NA	NA	NA	295.06	NA	306	NA	210.7366151	NA	297.6733808	PW2019T1	1.028571429	1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2667	90	0	0	NA	2qH1	chr2-4513773-181511691	2	1	1	0.631	2	NON-ABERRANT	1	0.845324881	sgMsh2	colon
chr7	62379763	62379763	AG	A	ENSMUST00000080403.6	NA	ENSMUSG00000056972	FS	R/X	805	Magel2	ENSMUST00000080403.6:c.2419del	ENSMUSP00000079265.5:p.Ala807HisfsTer67	H-2-Kb	8	48	0	SLPLLMPL	NA	NetMHCpan	360.7	NA	NA	92	0.109	446.234	NA	NA	NA	364.34	NA	360.7	NA	528.128981	NA	604.9785825	PW2019T1	1.985714286	1.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.117	92	0	0	NA	7qC	chr7-4554068-143880979	2	1	1	0.631	2	NON-ABERRANT	1	0.370839937	sgMsh2	colon
chr2	155550121	155550121	GA	G	ENSMUST00000029135.14	1	ENSMUSG00000027605	FS	E/X	221	Acss2	ENSMUST00000029135.14:c.666del	ENSMUSP00000029135.8:p.Lys222AsnfsTer3	H-2-Kb	8	6	7	AFYRGENL	AFYRGEKL	SMMPMBEC	198.034	688.24	3.475	109	0.083	274.02	911.727	3.327	1796.71	370.69	994.1	342.1	829.3541077	205.9396641	688.2401428	198.0341096	PW2019T1	-0.942857143	-0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.083	109	0	0	NA	2qH1	chr2-4513773-181511691	2	1	1	0.631	2	NON-ABERRANT	1	0.263074485	sgMsh2	colon
chr3	87913145	87913145	CT	C	ENSMUST00000005017.14	1	ENSMUSG00000004897	FS	F/X	48	Hdgf	ENSMUST00000005017.14:c.150del	ENSMUSP00000005017.8:p.Phe50LeufsTer91	H-2-Kb	8	54	0	TTLQSRPL	NA	SMM	174.478	NA	NA	144	0.125	286.989	NA	NA	NA	375.03	NA	851.1	NA	174.4777291	NA	198.9481935	PW2019T1	-0.5	-0.5	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.125	144	0	0	NA	3qF1	chr3-8935052-159911278	2	1	1	0.631	2	NON-ABERRANT	1	0.396196513	sgMsh2	colon
chr8	105375658	105375658	GC	G	ENSMUST00000014927.7	5	ENSMUSG00000014782	FS	A/X	93	Plekhg4	ENSMUST00000014927.7:c.284del	ENSMUSP00000014927.7:p.Pro95GlnfsTer25	H-2-Kb	8	26	0	TSCVLGPL	NA	SMMPMBEC	112.652	NA	NA	57	0.07	263.947	NA	NA	NA	378.36	NA	634.8	NA	149.534017	NA	112.6522836	PW2019T1	1.642857143	1.642857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.088	57	0	0	NA	8qD3	chr8-3194938-127409529	2	1	1	0.631	2	NON-ABERRANT	1	0.278922345	sgMsh2	colon
chr9	107915108	107915108	GC	G	ENSMUST00000035203.8	1	ENSMUSG00000032584	FS	C/X	920	Mst1r	ENSMUST00000035203.8:c.2764del	ENSMUSP00000035203.7:p.Leu922CysfsTer18	H-2-Kb	8	8	6	VVICPCPL	VVICPLPP	SMM	271.481	8011.983	29.512	99	0.091	311.496	12420.713	39.874	18118.1	427.91	14496.2	296.6	8011.982647	271.4813499	10345.22641	326.3923717	PW2019T1	2.042857143	2.1	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;Vardict	3	0.088	99	0	0	NA	9qF1	chr9-3342997-123664738	2	1	1	0.631	2	NON-ABERRANT	1	0.278922345	sgMsh2	colon
chr9	105945844	105945844	C	T	ENSMUST00000190193.7	5	ENSMUSG00000091345	missense	G/S	105	Col6a5	ENSMUST00000190193.7:c.313G>A	ENSMUSP00000139398.2:p.Gly105Ser	H-2-Kb	8	7	5	FGFISGSL	FGFIGGSL	NetMHCpan	130.7	235.9	1.805	148	0.027	265.031	462.744	1.746	1460.53	475.21	235.9	130.7	522.0835386	251.6170116	403.403814	278.4453695	PW2019T1	1.242857143	1.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.037	148	0	0	NA	9qF1	chr9-3342997-123664738	2	1	1	0.631	2	NON-ABERRANT	1	0.117274168	sgMsh2	colon
chr8	4213327	4213327	AG	A	ENSMUST00000168386.8	5	ENSMUSG00000064125	FS	L/X	780	Prr36	ENSMUST00000168386.8:c.2338del	ENSMUSP00000133114.2:p.Leu780TyrfsTer18	H-2-Kb	8	13	0	FPLWFYLL	NA	SMM	111.107	NA	NA	67	0.134	351.783	NA	NA	NA	626.47	NA	550.9	NA	111.1066364	NA	152.6651821	PW2019T1	1.485714286	1.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.13	67	0	0	NA	8qA1.1	chr8-3194938-127409529	2	1	1	0.631	2	NON-ABERRANT	1	0.412044374	sgMsh2	colon
chr3	101050108	101050108	C	T	ENSMUST00000102694.3	1	ENSMUSG00000027864	missense	G/R	717	Ptgfrn	ENSMUST00000102694.3:c.2149G>A	ENSMUSP00000099755.3:p.Gly717Arg	H-2-Kb	8	7	5	VTVERAVL	VTVEGAVL	SMMPMBEC	391.507	441.306	1.127	178	0.051	425.993	883.278	2.073	1829.79	657.5	1258.7	453.2	507.8553127	398.7860888	441.3061706	391.5074224	PW2019T1	0.757142857	0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.045	178	0	0	NA	3qF2.2	chr3-8935052-159911278	2	1	1	0.631	2	NON-ABERRANT	1	0.142630745	sgMsh2	colon
chr8	4213327	4213327	AG	A	ENSMUST00000168386.8	5	ENSMUSG00000064125	FS	L/X	780	Prr36	ENSMUST00000168386.8:c.2338del	ENSMUSP00000133114.2:p.Leu780TyrfsTer18	H-2-Kb	8	12	0	RFPLWFYL	NA	SMM	321.174	NA	NA	67	0.134	439.564	NA	NA	NA	662.63	NA	531.8	NA	321.1737185	NA	347.3281635	PW2019T1	1.342857143	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.13	67	0	0	NA	8qA1.1	chr8-3194938-127409529	2	1	1	0.631	2	NON-ABERRANT	1	0.412044374	sgMsh2	colon
chr5	147539307	147539307	C	T	ENSMUST00000031651.14	5	ENSMUSG00000029647	missense	R/W	698	Pan3	ENSMUST00000031651.14:c.2092C>T	ENSMUSP00000031651.8:p.Arg698Trp	H-2-Kb	9	8	4	IGAWFYTQL	IGARFYTQL	NetMHCpan	5.5	5.2	0.945	238	0.021	31.5	40.108	1.273	5.7	7.25	5.2	5.5	95.08455975	72.29528931	74.51607995	55.75065832	PW2019T1	0.285714286	0.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.027	238	0	0	NA	5qG3	chr5-3673201-150478141	2	1	1	0.631	2	NON-ABERRANT	1	0.085578447	sgMsh2	colon
chr2	89170901	89170901	G	A	ENSMUST00000217054.1	5	ENSMUSG00000101918	missense	H/Y	104	Olfr1225	ENSMUST00000217054.1:c.310C>T	ENSMUSP00000150915.1:p.His104Tyr	H-2-Kb	9	8	4	FAVYFFTGM	FAVHFFTGM	NetMHC	22.86	31.09	1.36	485	0.023	57.662	72.967	1.265	31.09	22.86	28.8	29.4	114.8444468	85.92311238	134.3538141	112.784651	PW2019T1	1.328571429	1.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.025	485	0	0	NA	2qE1	chr2-4513773-181511691	2	1	1	0.631	2	NON-ABERRANT	1	0.079239303	sgMsh2	colon
chr2	86160014	86160014	C	T	ENSMUST00000215624.1	NA	ENSMUSG00000075202	missense	A/T	119	Olfr1042	ENSMUST00000215624.1:c.355G>A	ENSMUSP00000151053.1:p.Ala119Thr	H-2-Kb	9	10	2	MTYDRYVAI	MAYDRYVAI	NetMHCpan	14.9	14.4	0.966	322	0.056	36.588	30.259	0.827	27.08	30	14.4	14.9	39.27443988	54.08913049	33.43874735	43.17675507	PW2019T1	-0.014285714	-0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.06	322	0	0	NA	2qD	chr2-4513773-181511691	2	1	1	0.631	2	NON-ABERRANT	1	0.190174326	sgMsh2	colon
chr7	102954991	102954991	CA	C	ENSMUST00000084812.2	NA	ENSMUSG00000066269	FS	F/X	210	Olfr575	ENSMUST00000084812.2:c.630del	ENSMUSP00000081873.2:p.Phe210LeufsTer6	H-2-Kb	9	4	8	VNFFYGFLL	VNFFYGFFV	NetMHCpan	8.4	34.1	4.06	173	0.064	35.361	130.861	3.701	121.36	35.88	34.1	8.4	143.5853066	34.84255546	140.3621462	37.69207095	PW2019T1	2.042857143	2.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.074	173	0	0	NA	7qE3	chr7-4554068-143880979	2	1	1	0.631	2	NON-ABERRANT	1	0.234548336	sgMsh2	colon
chr7	62379763	62379763	AG	A	ENSMUST00000080403.6	NA	ENSMUSG00000056972	FS	R/X	805	Magel2	ENSMUST00000080403.6:c.2419del	ENSMUSP00000079265.5:p.Ala807HisfsTer67	H-2-Kb	9	47	0	SSLPLLMPL	NA	NetMHC	37.18	NA	NA	92	0.109	148.607	NA	NA	NA	37.18	NA	73.8	NA	223.4138023	NA	273.6843727	PW2019T1	1.985714286	1.985714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.117	92	0	0	NA	7qC	chr7-4554068-143880979	2	1	1	0.631	2	NON-ABERRANT	1	0.370839937	sgMsh2	colon
chr8	4213327	4213327	AG	A	ENSMUST00000168386.8	5	ENSMUSG00000064125	FS	L/X	780	Prr36	ENSMUST00000168386.8:c.2338del	ENSMUSP00000133114.2:p.Leu780TyrfsTer18	H-2-Kb	9	16	0	WFYLLYRPL	NA	NetMHC	47.7	NA	NA	67	0.134	60.52	NA	NA	NA	47.7	NA	154	NA	55.98993973	NA	65.05040428	PW2019T1	0.385714286	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.13	67	0	0	NA	8qA1.1	chr8-3194938-127409529	2	1	1	0.631	2	NON-ABERRANT	1	0.412044374	sgMsh2	colon
chr7	102954991	102954991	CA	C	ENSMUST00000084812.2	NA	ENSMUSG00000066269	FS	F/X	210	Olfr575	ENSMUST00000084812.2:c.630del	ENSMUSP00000081873.2:p.Phe210LeufsTer6	H-2-Kb	9	3	9	TVNFFYGFL	TVNFFYGFF	NetMHCpan	44.5	334.8	7.524	173	0.064	88.91	265.549	2.987	308.71	63.73	334.8	44.5	222.3873092	131.8590675	197.3558481	114.0906357	PW2019T1	1	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.074	173	0	0	NA	7qE3	chr7-4554068-143880979	2	1	1	0.631	2	NON-ABERRANT	1	0.234548336	sgMsh2	colon
chr2	86639395	86639395	GA	G	ENSMUST00000216851.1	NA	ENSMUSG00000110804	FS	F/X	104	Olfr1084	ENSMUST00000216851.1:c.312del	ENSMUSP00000150546.1:p.Leu105PhefsTer40	H-2-Kb	9	28	0	TAMWPYVSL	NA	NetMHCpan	56.5	NA	NA	368	0.046	121.193	NA	NA	NA	75.18	NA	56.5	NA	171.4391481	NA	167.2052848	PW2019T1	0.757142857	0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.049	368	0	0	NA	2qD	chr2-4513773-181511691	2	1	1	0.631	2	NON-ABERRANT	1	0.155309033	sgMsh2	colon
chr8	4213327	4213327	AG	A	ENSMUST00000168386.8	5	ENSMUSG00000064125	FS	L/X	780	Prr36	ENSMUST00000168386.8:c.2338del	ENSMUSP00000133114.2:p.Leu780TyrfsTer18	H-2-Kb	9	7	5	ATPPYRFPL	ATPPLQIPL	NetMHCpan	75	835.3	11.137	67	0.134	314.345	1498.651	4.768	1234.88	93.99	835.3	75	1762.422384	534.6997733	1937.536979	598.7561676	PW2019T1	-0.571428571	-0.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.13	67	0	0	NA	8qA1.1	chr8-3194938-127409529	2	1	1	0.631	2	NON-ABERRANT	1	0.412044374	sgMsh2	colon
chr6	136839806	136839806	G	T	ENSMUST00000203499.1	5	ENSMUSG00000047515	missense	A/S	15	BC049715	ENSMUST00000203499.1:c.43G>T	ENSMUSP00000145015.1:p.Ala15Ser	H-2-Kb	9	11	1	SAKLFFFHI	AAKLFFFHI	NetMHCpan	58.8	127.4	2.167	115	0.07	143.763	258.064	1.795	293.51	118.44	127.4	58.8	261.8846237	169.0869148	254.2435828	185.8874201	PW2019T1	1.371428571	1.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.068	115	0	0	NA	6qG1	chr6-3494310-149014300	2	1	1	0.631	2	NON-ABERRANT	1	0.215530903	sgMsh2	colon
chr7	120932233	120932233	C	A	ENSMUST00000033173.14	1	ENSMUSG00000030880	missense	L/M	208	Polr3e	ENSMUST00000033173.14:c.622C>A	ENSMUSP00000033173.7:p.Leu208Met	H-2-Kb	9	8	4	WVHMHYYGM	WVHLHYYGM	NetMHC	141.17	135.95	0.963	70	0.143	178.434	161.501	0.905	135.95	141.17	342.8	273.3	142.5968723	171.8343562	180.405594	185.033345	PW2019T1	-0.8	-0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.129	70	0	0	NA	7qF2	chr7-4554068-143880979	2	1	1	0.631	2	NON-ABERRANT	1	0.408874802	sgMsh2	colon
chr4	114408965	114408965	G	A	ENSMUST00000094894.3	5	ENSMUSG00000070867	missense	V/I	59	Trabd2b	ENSMUST00000094894.3:c.175G>A	ENSMUSP00000092494.3:p.Val59Ile	H-2-Kb	9	8	4	TIHIPYTRV	TIHVPYTRV	NetMHC	162.35	143.25	0.882	53	0.113	454.135	418.529	0.922	143.25	162.35	579	607.9	373.3447082	451.9704069	463.713778	456.2995075	PW2019T1	-0.371428571	0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.116	53	0	0	NA	4qD1	chr4-3973093-156200568	2	1	1	0.631	2	NON-ABERRANT	1	0.367670365	sgMsh2	colon
chr9	27334216	27334216	CG	C	ENSMUST00000133213.2	5	ENSMUSG00000034275	FS	G/X	1156	Igsf9b	ENSMUST00000133213.2:c.3471del	ENSMUSP00000117017.1:p.His1158MetfsTer47	H-2-Kb	9	46	0	YIKWCYSPL	NA	NetMHCpan	140.2	NA	NA	46	0.109	197.202	NA	NA	NA	167.81	NA	140.2	NA	277.4022632	NA	226.5948317	PW2019T1	-0.314285714	-0.171428571	FALSE	FALSE	FALSE	1	FALSE	0	Strelka2;Vardict	2	0.1087	46	0	0	NA	9qA4	chr9-3342997-123664738	2	1	1	0.631	2	NON-ABERRANT	1	0.344532488	sgMsh2	colon
chr8	4213327	4213327	AG	A	ENSMUST00000168386.8	5	ENSMUSG00000064125	FS	L/X	780	Prr36	ENSMUST00000168386.8:c.2338del	ENSMUSP00000133114.2:p.Leu780TyrfsTer18	H-2-Kb	9	12	0	RFPLWFYLL	NA	NetMHC	216.32	NA	NA	67	0.134	266.654	NA	NA	NA	216.32	NA	217	NA	316.3078717	NA	514.3396441	PW2019T1	1.485714286	1.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.13	67	0	0	NA	8qA1.1	chr8-3194938-127409529	2	1	1	0.631	2	NON-ABERRANT	1	0.412044374	sgMsh2	colon
chr9	80136750	80136750	GA	G	ENSMUST00000165607.8	1	ENSMUSG00000034252	FS	K/X	888	Senp6	ENSMUST00000165607.8:c.2672del	ENSMUSP00000126777.2:p.Asn891IlefsTer44	H-2-Kb	9	47	0	ASVLYIIQM	NA	NetMHC	227.71	NA	NA	148	0.149	259.534	NA	NA	NA	227.71	NA	259.5	NA	350.0338139	NA	259.5673122	PW2019T1	2.014285714	2.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1486	148	0	0	NA	9qE1	chr9-3342997-123664738	2	1	1	0.631	2	NON-ABERRANT	1	0.470998415	sgMsh2	colon
chr2	86639395	86639395	GA	G	ENSMUST00000216851.1	NA	ENSMUSG00000110804	FS	F/X	104	Olfr1084	ENSMUST00000216851.1:c.312del	ENSMUSP00000150546.1:p.Leu105PhefsTer40	H-2-Kb	9	8	5	LAFFFCSLA	NA	NetMHCpan	191.3	NA	NA	368	0.046	280.039	NA	NA	NA	248.01	NA	191.3	NA	337.3727491	NA	312.0685478	PW2019T1	2.242857143	2.242857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.049	368	0	0	NA	2qD	chr2-4513773-181511691	2	1	1	0.631	2	NON-ABERRANT	1	0.155309033	sgMsh2	colon
chr8	4213327	4213327	AG	A	ENSMUST00000168386.8	5	ENSMUSG00000064125	FS	L/X	780	Prr36	ENSMUST00000168386.8:c.2338del	ENSMUSP00000133114.2:p.Leu780TyrfsTer18	H-2-Kb	9	17	0	FYLLYRPLL	NA	SMM	244.405	NA	NA	67	0.134	310.668	NA	NA	NA	318.47	NA	367.6	NA	244.4049514	NA	302.8656361	PW2019T1	1.114285714	1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.13	67	0	0	NA	8qA1.1	chr8-3194938-127409529	2	1	1	0.631	2	NON-ABERRANT	1	0.412044374	sgMsh2	colon
chr4	118391252	118391252	C	T	ENSMUST00000075406.11	1	ENSMUSG00000033253	missense	R/H	654	Szt2	ENSMUST00000075406.11:c.1961G>A	ENSMUSP00000074862.5:p.Arg654His	H-2-Kb	9	5	7	SSFYMVHII	SSFYMVRII	NetMHCpan	176.6	205.4	1.163	132	0.235	375.708	311.668	0.83	191.65	355.95	205.4	176.6	417.9362099	395.4667729	521.4948213	470.1646793	PW2019T1	1.914285714	1.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.193	132	0	0	NA	4qD2.1	chr4-3973093-156200568	2	1	1	0.631	2	NON-ABERRANT	1	0.611727417	sgMsh2	colon
chr3	87913145	87913145	CT	C	ENSMUST00000005017.14	1	ENSMUSG00000004897	FS	F/X	48	Hdgf	ENSMUST00000005017.14:c.150del	ENSMUSP00000005017.8:p.Phe50LeufsTer91	H-2-Kb	9	8	6	YQVFFLGPM	YQVFFFGTH	NetMHCpan	208	10598.6	50.955	144	0.125	455.442	6575.522	14.438	9408.99	400.25	10598.6	208	3742.053566	510.6343193	3063.726549	525.1096507	PW2019T1	1.928571429	1.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.125	144	0	0	NA	3qF1	chr3-8935052-159911278	2	1	1	0.631	2	NON-ABERRANT	1	0.396196513	sgMsh2	colon
chr7	35197833	35197833	G	A	ENSMUST00000001854.11	1	ENSMUSG00000030495	missense	A/T	230	Slc7a10	ENSMUST00000001854.11:c.688G>A	ENSMUSP00000001854.5:p.Ala230Thr	H-2-Kb	9	10	2	FTFWMTPSV	FAFWMTPSV	NetMHCpan	366.5	266.2	0.726	69	0.072	446.131	335.979	0.753	317.87	404.61	266.2	366.5	354.0870144	487.6519891	418.0709584	539.8212792	PW2019T1	0.7	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.091	69	0	0	NA	7qB2	chr7-4554068-143880979	2	1	1	0.631	2	NON-ABERRANT	1	0.288431062	sgMsh2	colon
chr7	139845658	139845658	C	T	ENSMUST00000026548.13	1	ENSMUSG00000025475	missense	A/V	29	Adgra1	ENSMUST00000026548.13:c.86C>T	ENSMUSP00000026548.7:p.Ala29Val	H-2-Kb	9	5	7	VVYACTVVM	VVYACTAVM	SMMPMBEC	179.164	132.206	0.738	35	0.086	257.199	122.008	0.474	111.81	428.73	91.2	313.9	139.0304729	200.4979793	132.2056452	179.1636906	PW2019T1	1.8	2.128571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.116	35	0	0	NA	7qF4	chr7-4554068-143880979	2	1	1	0.631	2	NON-ABERRANT	1	0.367670365	sgMsh2	colon
chr2	86639395	86639395	GA	G	ENSMUST00000216851.1	NA	ENSMUSG00000110804	FS	F/X	104	Olfr1084	ENSMUST00000216851.1:c.312del	ENSMUSP00000150546.1:p.Leu105PhefsTer40	H-2-Kb	9	42	0	SCLIKYVGF	NA	SMMPMBEC	231.34	NA	NA	368	0.046	404.486	NA	NA	NA	439.9	NA	1008.6	NA	369.0710667	NA	231.3396105	PW2019T1	1.385714286	1.385714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.049	368	0	0	NA	2qD	chr2-4513773-181511691	2	1	1	0.631	2	NON-ABERRANT	1	0.155309033	sgMsh2	colon
chr4	40177932	40177932	G	A	ENSMUST00000102973.3	1	ENSMUSG00000028405	missense	A/T	318	Aco1	ENSMUST00000102973.3:c.952G>A	ENSMUSP00000100038.3:p.Ala318Thr	H-2-Kb	9	8	4	VSITYLLQT	VSIAYLLQT	SMMPMBEC	208.089	247.885	1.191	75	0.053	399.472	475.043	1.189	634.34	488.59	577.6	466.2	372.4860392	332.7438214	247.8848587	208.0894201	PW2019T1	0.842857143	1.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.067	75	0	0	NA	4qA5	chr4-3973093-156200568	2	1	1	0.631	2	NON-ABERRANT	1	0.212361331	sgMsh2	colon
chr9	27334216	27334216	CG	C	ENSMUST00000133213.2	5	ENSMUSG00000034275	FS	G/X	1156	Igsf9b	ENSMUST00000133213.2:c.3471del	ENSMUSP00000117017.1:p.His1158MetfsTer47	H-2-Kb	9	14	0	VAPAHLAWI	NA	SMM	348.426	NA	NA	46	0.109	382.882	NA	NA	NA	520.92	NA	383.6	NA	348.4255546	NA	382.1641989	PW2019T1	0.885714286	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1087	46	0	0	NA	9qA4	chr9-3342997-123664738	2	1	1	0.631	2	NON-ABERRANT	1	0.344532488	sgMsh2	colon
chr1	125572486	125572486	CT	C	ENSMUST00000027580.10	1	ENSMUSG00000026342	FS	F/X	246	Slc35f5	ENSMUST00000027580.10:c.745del	ENSMUSP00000027580.4:p.Cys249AlafsTer22	H-2-Db	9	13	2	FALCGFWQI	NA	NetMHC	164.98	NA	NA	161	0.298	316.909	NA	NA	NA	164.98	NA	309.8	NA	333.1347981	NA	324.0186439	PW2020T2	1.257142857	1.771428571	FALSE	FALSE	FALSE	1	FALSE	0	Strelka2;Vardict	2	0.2981	161	0	0	NA	1qE2.3	chr1-4783928-193352278	2	2	0	0.597	2	NON-ABERRANT	1	0.998659966	sgMsh2	colon
chr1	173936593	173936593	CT	C	ENSMUST00000129829.7	1	ENSMUSG00000039997	FS	K/X	104	Ifi203	ENSMUST00000129829.7:c.312del	ENSMUSP00000122424.1:p.Gln106LysfsTer56	H-2-Db	9	23	0	STIKNQTRV	NA	NetMHCpan	139.2	NA	NA	202	0.158	255.751	NA	NA	NA	177.6	NA	139.2	NA	333.9027532	NA	406.0411041	PW2020T2	-1.057142857	-1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1584	202	0	0	NA	1qH3	chr1-4783928-193352278	2	2	0	0.597	2	NON-ABERRANT	1	0.530653266	sgMsh2	colon
chr10	11457181	11457181	G	A	ENSMUST00000069106.4	1	ENSMUSG00000055493	missense	A/T	253	Epm2a	ENSMUST00000069106.4:c.757G>A	ENSMUSP00000066050.4:p.Ala253Thr	H-2-Db	9	11	1	TLLENGHTV	ALLENGHTV	NetMHC	334.9	114.89	0.343	73	0.301	405.746	253.496	0.625	114.89	334.9	282.8	396.9	224.1919425	414.591124	286.1343518	457.6884996	PW2020T2	-0.471428571	-0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.305	73	0	0	NA	10qA1	chr10-4413507-130453386	2	1	1	0.597	2	NON-ABERRANT	1	1	sgMsh2	colon
chr10	4035297	4035297	G	A	ENSMUST00000120585.7	1	ENSMUSG00000040675	missense	A/T	568	Mthfd1l	ENSMUST00000120585.7:c.1702G>A	ENSMUSP00000112897.1:p.Ala568Thr	H-2-Db	9	3	9	FARLNIDPT	FARLNIDPA	SMMPMBEC	174.409	98.757	0.566	181	0.022	229.824	91.469	0.398	89.48	337	84	208.1	93.45875687	251.5474968	98.75748012	174.409445	PW2020T2	-0.785714286	0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.032	181	0	0	NA	10qA1	NA	NA	NA	NA	0.597	2	NON-ABERRANT	NA	NA	sgMsh2	colon
chr16	34198458	34198458	CG	C	ENSMUST00000114960.8	1	ENSMUSG00000061751	FS	P/X	1311	Kalrn	ENSMUST00000114960.8:c.3933del	ENSMUSP00000110611.2:p.Gly1312AlafsTer65	H-2-Db	9	13	0	SSIRNISSS	NA	SMM	162.039	NA	NA	133	0.105	454.194	NA	NA	NA	1014.13	NA	658.6	NA	162.0391663	NA	249.7870966	PW2020T2	-0.2	-0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.126	133	0	0	NA	16qB3	chr16-3592317-97850976	2	1	1	0.597	2	NON-ABERRANT	1	0.422110553	sgMsh2	colon
chr1	173936593	173936593	CT	C	ENSMUST00000129829.7	1	ENSMUSG00000039997	FS	K/X	104	Ifi203	ENSMUST00000129829.7:c.312del	ENSMUSP00000122424.1:p.Gln106LysfsTer56	H-2-Db	10	16	0	SVLLNLFSTI	NA	NetMHCpan	165.2	NA	NA	202	0.158	394.548	NA	NA	NA	180.61	NA	165.2	NA	608.4851727	NA	864.3109199	PW2020T2	1.414285714	2.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1584	202	0	0	NA	1qH3	chr1-4783928-193352278	2	2	0	0.597	2	NON-ABERRANT	1	0.530653266	sgMsh2	colon
chr1	125572486	125572486	CT	C	ENSMUST00000027580.10	1	ENSMUSG00000026342	FS	F/X	246	Slc35f5	ENSMUST00000027580.10:c.745del	ENSMUSP00000027580.4:p.Cys249AlafsTer22	H-2-Kb	8	9	6	ISFFFALC	ISFFFCFV	SMM	8.585	3.756	0.438	161	0.298	11.018	5.982	0.543	8.13	12.47	7.7	15.3	3.756124682	8.58499408	4.26324214	9.566211974	PW2020T2	2.242857143	2.528571429	FALSE	TRUE	FALSE	1	FALSE	0	Strelka2;Vardict	2	0.2981	161	0	0	NA	1qE2.3	chr1-4783928-193352278	2	2	0	0.597	2	NON-ABERRANT	1	0.998659966	sgMsh2	colon
chr11	65008078	65008078	TC	T	ENSMUST00000047463.14	1	ENSMUSG00000033389	FS	E/X	758	Arhgap44	ENSMUST00000047463.14:c.2272del	ENSMUSP00000039139.8:p.Glu758LysfsTer69	H-2-Kb	8	48	0	STLRLSPL	NA	NetMHC	15.24	NA	NA	60	0.283	43.681	NA	NA	NA	15.24	NA	42.1	NA	45.26265239	NA	49.40148455	PW2020T2	0.542857143	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.297	60	0	0	NA	11qB3	chr11-3133205-121426601	2	1	1	0.597	2	NON-ABERRANT	1	0.994974874	sgMsh2	colon
chr17	38305341	38305341	A	C	ENSMUST00000213505.1	5	ENSMUSG00000054940	missense	L/R	40	Olfr137	ENSMUST00000213505.1:c.119T>G	ENSMUSP00000150173.1:p.Leu40Arg	H-2-Kb	8	5	7	IFYMMTRM	IFYMMTLM	NetMHC	27.12	51.23	1.889	195	0.297	42.274	92.954	2.199	51.23	27.12	70.1	35.6	124.9510759	55.94225905	115.8083836	48.94856902	PW2020T2	0.285714286	0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.313	195	0	0	NA	17qB1	chr17-3148703-94739695	2	1	1	0.597	2	NON-ABERRANT	1	1	sgMsh2	colon
chr17	75544819	75544819	G	A	ENSMUST00000112507.3	1	ENSMUSG00000002017	missense	P/L	89	Fam98a	ENSMUST00000112507.3:c.266C>T	ENSMUSP00000108126.3:p.Pro89Leu	H-2-Kb	8	8	4	MNCLYPSL	MNCPYPSL	SMM	47.07	89.689	1.905	90	0.1	60.346	133.817	2.217	271.15	73.74	149.4	69.2	89.68916897	47.06954498	118.2333514	51.49202839	PW2020T2	0.414285714	0.414285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.119	90	0	0	NA	17qE2	chr17-3148703-94739695	2	1	1	0.597	2	NON-ABERRANT	1	0.398659966	sgMsh2	colon
chr10	93237851	93237851	A	C	ENSMUST00000069965.8	1	ENSMUSG00000020015	missense	S/R	475	Cdk17	ENSMUST00000069965.8:c.1423A>C	ENSMUSP00000070355.7:p.Ser475Arg	H-2-Kb	8	5	7	KHVYFRRL	KHVYFRSL	NetMHC	76.94	178.99	2.326	94	0.202	166.766	244.204	1.464	178.99	76.94	183.8	164.2	306.71852	176.0921516	304.6070846	169.3323751	PW2020T2	-0.385714286	-0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.229	94	0	0	NA	10qC2	chr10-4413507-130453386	2	1	1	0.597	2	NON-ABERRANT	1	0.767169179	sgMsh2	colon
chr10	50649835	50649835	A	G	ENSMUST00000035606.9	5	ENSMUSG00000038774	missense	T/A	548	Ascc3	ENSMUST00000035606.9:c.1642A>G	ENSMUSP00000036726.8:p.Thr548Ala	H-2-Kb	8	11	1	ANYFSKRL	TNYFSKRL	NetMHCpan	35.4	33.5	0.946	105	0.048	101.513	86.363	0.851	75.06	79.79	33.5	35.4	97.66523514	123.2366829	116.0753495	147.8223152	PW2020T2	-1.057142857	-1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.061	105	0	0	NA	10qB3	chr10-4413507-130453386	2	1	1	0.597	2	NON-ABERRANT	1	0.204355109	sgMsh2	colon
chr14	50789927	50789927	CA	C	ENSMUST00000095932.4	5	ENSMUSG00000071470	FS	F/X	239	Ccnb1ip1	ENSMUST00000095932.4:c.717del	ENSMUSP00000093622.3:p.Phe239LeufsTer62	H-2-Kb	8	50	0	SFFIPASL	NA	SMM	51.611	NA	NA	144	0.056	77.764	NA	NA	NA	84.45	NA	87.6	NA	51.61072977	NA	71.07878574	PW2020T2	1.9	1.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.058	144	0	0	NA	14qC1	chr14-3072210-123592557	2	1	1	0.597	2	NON-ABERRANT	1	0.194304858	sgMsh2	colon
chr15	28327307	28327307	TA	T	ENSMUST00000067048.7	5	ENSMUSG00000022262	FS	K/X	2057	Dnah5	ENSMUST00000067048.7:c.6174del	ENSMUSP00000069751.6:p.Lys2058AsnfsTer11	H-2-Kb	8	11	2	KNLSFLLM	NA	NetMHCpan	53.4	NA	NA	139	0.173	195.4	NA	NA	NA	130.94	NA	53.4	NA	259.8603386	NA	306.013087	PW2020T2	1.685714286	1.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.179	139	0	0	NA	15qB1	chr15-3280572-103525164	2	1	1	0.597	2	NON-ABERRANT	1	0.599664992	sgMsh2	colon
chr17	27564197	27564199	GTTC	G	ENSMUST00000145183.2	3	ENSMUSG00000062753	inframe_del	E/-	65	AI413582	ENSMUST00000145183.2:c.193_195del	ENSMUSP00000156249.1:p.Glu65del	H-2-Kb	8	4	8	YSYDPAEL	YSYDPAEE	NetMHC	132.98	18526.06	139.315	141	0.028	163.666	8738.829	53.394	18526.06	132.98	15052.5	172.9	1773.127641	154.4329616	2425.157786	193.0812048	PW2020T2	-0.728571429	-0.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.037	141	0	0	NA	17qA3.3	chr17-3148703-94739695	2	1	1	0.597	2	NON-ABERRANT	1	0.123953099	sgMsh2	colon
chr17	45549389	45549389	AG	A	ENSMUST00000180252.2	1	ENSMUSG00000096847	FS	P/X	4	Tmem151b	ENSMUST00000180252.2:c.11del	ENSMUSP00000136337.1:p.Pro4LeufsTer78	H-2-Kb	8	43	0	SSPLSPNL	NA	NetMHC	150.42	NA	NA	18	0.389	215.994	NA	NA	NA	150.42	NA	289.4	NA	169.7227266	NA	262.2647967	PW2020T2	-0.1	-0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.4	18	0	0	NA	17qB3	chr17-3148703-94739695	2	1	1	0.597	2	NON-ABERRANT	1	0.67001675	sgMsh2	colon
chr1	125572486	125572486	CT	C	ENSMUST00000027580.10	1	ENSMUSG00000026342	FS	F/X	246	Slc35f5	ENSMUST00000027580.10:c.745del	ENSMUSP00000027580.4:p.Cys249AlafsTer22	H-2-Kb	8	8	7	KISFFFAL	KISFFFCF	NetMHCpan	47.3	1685.3	35.63	161	0.298	129.485	4452.353	34.385	4409.6	152	1685.3	47.3	5659.003988	117.1493815	4495.106648	141.8208226	PW2020T2	2.528571429	2.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2981	161	0	0	NA	1qE2.3	chr1-4783928-193352278	2	2	0	0.597	2	NON-ABERRANT	1	0.998659966	sgMsh2	colon
chr12	87464636	87464636	AT	A	ENSMUST00000021428.8	1	ENSMUSG00000021039	FS	M/X	82	Snw1	ENSMUST00000021428.8:c.244del	ENSMUSP00000021428.7:p.Met82CysfsTer44	H-2-Kb	8	39	0	RSFTANTL	NA	SMM	128.156	NA	NA	96	0.302	164.081	NA	NA	NA	173.73	NA	178.6	NA	128.1563117	NA	154.4329616	PW2020T2	0.385714286	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.312	96	0	0	NA	12qD2	chr12-3235624-120011486	2	1	1	0.597	2	NON-ABERRANT	1	1	sgMsh2	colon
chr12	87464636	87464636	AT	A	ENSMUST00000021428.8	1	ENSMUSG00000021039	FS	M/X	82	Snw1	ENSMUST00000021428.8:c.244del	ENSMUSP00000021428.7:p.Met82CysfsTer44	H-2-Kb	8	46	0	LTWFLRRL	NA	NetMHCpan	75.1	NA	NA	96	0.302	147.962	NA	NA	NA	217.38	NA	75.1	NA	168.9429215	NA	126.9813676	PW2020T2	-0.028571429	-0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.312	96	0	0	NA	12qD2	chr12-3235624-120011486	2	1	1	0.597	2	NON-ABERRANT	1	1	sgMsh2	colon
chr15	28327307	28327307	TA	T	ENSMUST00000067048.7	5	ENSMUSG00000022262	FS	K/X	2057	Dnah5	ENSMUST00000067048.7:c.6174del	ENSMUSP00000069751.6:p.Lys2058AsnfsTer11	H-2-Kb	8	13	0	LSFLLMEI	NA	NetMHCpan	168.2	NA	NA	139	0.173	377.513	NA	NA	NA	263.28	NA	168.2	NA	572.4532166	NA	491.7450535	PW2020T2	1.785714286	1.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.179	139	0	0	NA	15qB1	chr15-3280572-103525164	2	1	1	0.597	2	NON-ABERRANT	1	0.599664992	sgMsh2	colon
chr14	50789927	50789927	CA	C	ENSMUST00000095932.4	5	ENSMUSG00000071470	FS	F/X	239	Ccnb1ip1	ENSMUST00000095932.4:c.717del	ENSMUSP00000093622.3:p.Phe239LeufsTer62	H-2-Kb	8	58	0	SSLHISTL	NA	NetMHCpan	131.5	NA	NA	144	0.056	313.103	NA	NA	NA	303.55	NA	131.5	NA	380.8377582	NA	322.6561891	PW2020T2	0.942857143	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.058	144	0	0	NA	14qC1	chr14-3072210-123592557	2	1	1	0.597	2	NON-ABERRANT	1	0.194304858	sgMsh2	colon
chr17	38305341	38305341	A	C	ENSMUST00000213505.1	5	ENSMUSG00000054940	missense	L/R	40	Olfr137	ENSMUST00000213505.1:c.119T>G	ENSMUSP00000150173.1:p.Leu40Arg	H-2-Kb	8	8	4	MMTRMGNL	MMTLMGNL	SMM	340.204	414.706	1.219	195	0.297	374.074	484.365	1.295	496.95	364.67	571.4	563.8	414.7056956	340.2044578	471.7805149	383.4775994	PW2020T2	-0.214285714	-0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.313	195	0	0	NA	17qB1	chr17-3148703-94739695	2	1	1	0.597	2	NON-ABERRANT	1	1	sgMsh2	colon
chr1	173936593	173936593	CT	C	ENSMUST00000129829.7	1	ENSMUSG00000039997	FS	K/X	104	Ifi203	ENSMUST00000129829.7:c.312del	ENSMUSP00000122424.1:p.Gln106LysfsTer56	H-2-Kb	8	56	0	SRLSFQKL	NA	SMM	313.141	NA	NA	202	0.158	362.485	NA	NA	NA	372.81	NA	954.6	NA	313.1410475	NA	352.1599796	PW2020T2	-0.328571429	-0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1584	202	0	0	NA	1qH3	chr1-4783928-193352278	2	2	0	0.597	2	NON-ABERRANT	1	0.530653266	sgMsh2	colon
chr15	101202988	101202988	GA	G	ENSMUST00000000544.11	1	ENSMUSG00000000532	FS	K/X	344	Acvr1b	ENSMUST00000000544.11:c.1037del	ENSMUSP00000000544.9:p.Asn346MetfsTer22	H-2-Kb	8	24	0	LSVMMRSL	NA	NetMHCpan	266.6	NA	NA	82	0.085	394.323	NA	NA	NA	389.86	NA	266.6	NA	593.9364789	NA	398.7860888	PW2020T2	0.814285714	0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0854	82	0	0	NA	15qF1	chr15-3280572-103525164	2	1	1	0.597	2	NON-ABERRANT	1	0.286097152	sgMsh2	colon
chr10	4035297	4035297	G	A	ENSMUST00000120585.7	1	ENSMUSG00000040675	missense	A/T	568	Mthfd1l	ENSMUST00000120585.7:c.1702G>A	ENSMUSP00000112897.1:p.Ala568Thr	H-2-Kb	8	11	1	TTITWQRV	ATITWQRV	SMMPMBEC	374.749	477.243	1.274	181	0.022	477.832	585.971	1.226	612.52	512.32	852.1	806.4	559.4225905	443.3431473	477.2434758	374.7485835	PW2020T2	-0.228571429	-0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.032	181	0	0	NA	10qA1	NA	NA	NA	NA	0.597	2	NON-ABERRANT	NA	NA	sgMsh2	colon
chr10	11457181	11457181	G	A	ENSMUST00000069106.4	1	ENSMUSG00000055493	missense	A/T	253	Epm2a	ENSMUST00000069106.4:c.757G>A	ENSMUSP00000066050.4:p.Ala253Thr	H-2-Kb	8	6	6	VCLLHTLL	VCLLHALL	SMMPMBEC	252.778	86.644	0.343	73	0.301	308.603	115.465	0.374	127.24	546.82	162.6	320.9	103.6907462	296.3056959	86.64430052	252.7784229	PW2020T2	1.971428571	2.028571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.305	73	0	0	NA	10qA1	chr10-4413507-130453386	2	1	1	0.597	2	NON-ABERRANT	1	1	sgMsh2	colon
chr13	65195261	65195261	T	A	ENSMUST00000221659.1	5	ENSMUSG00000032999	missense	D/V	190	Nlrp4f	ENSMUST00000221659.1:c.569A>T	ENSMUSP00000152151.1:p.Asp190Val	H-2-Kb	8	4	8	AFYFCCQV	AFYFCCQD	SMM	367.062	2453.24	6.683	216	0.292	459.999	7585.32	16.49	12746.51	549.54	12717.4	673.7	2453.23979	367.0624846	2107.366151	370.458872	PW2020T2	1.428571429	1.428571429	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.295	216	0	0	NA	13qB3	chr13-3559926-119495179	2	1	1	0.597	2	NON-ABERRANT	1	0.988274707	sgMsh2	colon
chr13	22772788	22772788	T	C	ENSMUST00000227136.1	NA	ENSMUSG00000071493	missense	I/V	180	Vmn1r208	ENSMUST00000227136.1:c.538A>G	ENSMUSP00000153904.1:p.Ile180Val	H-2-Kb	8	8	4	IKWVFLIL	IKWIFLIL	SMMPMBEC	112.135	133.272	1.189	201	0.104	287.967	348.536	1.21	831.77	629.31	563.8	457.7	128.4517425	118.2333514	133.2723329	112.1346934	PW2020T2	2.042857143	2.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.116	201	0	0	NA	13qA3.1	chr13-3559926-119495179	2	1	1	0.597	2	NON-ABERRANT	1	0.388609715	sgMsh2	colon
chr13	22772788	22772788	T	C	ENSMUST00000227136.1	NA	ENSMUSG00000071493	missense	I/V	180	Vmn1r208	ENSMUST00000227136.1:c.538A>G	ENSMUSP00000153904.1:p.Ile180Val	H-2-Kb	8	11	1	VFLILMVL	IFLILMVL	SMM	163.207	174.076	1.067	201	0.104	444.478	492.236	1.107	746.93	645.32	1419.9	1286.9	174.0764414	163.2074578	237.5417764	243.6351806	PW2020T2	3.542857143	3.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.116	201	0	0	NA	13qA3.1	chr13-3559926-119495179	2	1	1	0.597	2	NON-ABERRANT	1	0.388609715	sgMsh2	colon
chr11	79692753	79692753	A	G	ENSMUST00000017783.12	1	ENSMUSG00000017639	missense	I/V	608	Rab11fip4	ENSMUST00000017783.12:c.1822A>G	ENSMUSP00000017783.6:p.Ile608Val	H-2-Kb	9	11	1	VNFRLRQYM	INFRLRQYM	NetMHCpan	30.7	31	1.01	104	0.346	80.101	113.816	1.421	38.35	31.64	31	30.7	189.282298	128.5612244	199.6411211	150.7474589	PW2020T2	-0.757142857	-0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.346	104	0	0	NA	11qB5	chr11-3133205-121426601	2	1	1	0.597	2	NON-ABERRANT	1	1	sgMsh2	colon
chr14	50789927	50789927	CA	C	ENSMUST00000095932.4	5	ENSMUSG00000071470	FS	F/X	239	Ccnb1ip1	ENSMUST00000095932.4:c.717del	ENSMUSP00000093622.3:p.Phe239LeufsTer62	H-2-Kb	9	49	0	SSFFIPASL	NA	NetMHCpan	33.8	NA	NA	144	0.056	158.594	NA	NA	NA	63.53	NA	33.8	NA	257.1046906	NA	253.6588388	PW2020T2	1.9	1.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.058	144	0	0	NA	14qC1	chr14-3072210-123592557	2	1	1	0.597	2	NON-ABERRANT	1	0.194304858	sgMsh2	colon
chr13	65195261	65195261	T	A	ENSMUST00000221659.1	5	ENSMUSG00000032999	missense	D/V	190	Nlrp4f	ENSMUST00000221659.1:c.569A>T	ENSMUSP00000152151.1:p.Asp190Val	H-2-Kb	9	3	9	YAFYFCCQV	YAFYFCCQD	NetMHC	72.08	3131.56	43.446	216	0.292	122.829	1810.731	14.742	3131.56	72.08	3788.7	84.5	489.9028884	172.2304753	430.7745129	161.1573064	PW2020T2	1.428571429	1.428571429	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.295	216	0	0	NA	13qB3	chr13-3559926-119495179	2	1	1	0.597	2	NON-ABERRANT	1	0.988274707	sgMsh2	colon
chr17	38305341	38305341	A	C	ENSMUST00000213505.1	5	ENSMUSG00000054940	missense	L/R	40	Olfr137	ENSMUST00000213505.1:c.119T>G	ENSMUSP00000150173.1:p.Leu40Arg	H-2-Kb	9	7	5	YMMTRMGNL	YMMTLMGNL	NetMHC	88.49	160.44	1.813	195	0.297	117.431	273.07	2.325	160.44	88.49	123.9	90.9	446.7967444	180.3474475	385.7003207	143.9627056	PW2020T2	-0.214285714	-0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.313	195	0	0	NA	17qB1	chr17-3148703-94739695	2	1	1	0.597	2	NON-ABERRANT	1	1	sgMsh2	colon
chr10	93237851	93237851	A	C	ENSMUST00000069965.8	1	ENSMUSG00000020015	missense	S/R	475	Cdk17	ENSMUST00000069965.8:c.1423A>C	ENSMUSP00000070355.7:p.Ser475Arg	H-2-Kb	9	4	8	MKHVYFRRL	MKHVYFRSL	NetMHC	90.06	151.62	1.684	94	0.202	235.234	315.716	1.342	151.62	90.06	193.8	158.5	437.6329367	311.967965	522.696991	364.9639766	PW2020T2	-0.385714286	-0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.229	94	0	0	NA	10qC2	chr10-4413507-130453386	2	1	1	0.597	2	NON-ABERRANT	1	0.767169179	sgMsh2	colon
chr17	38305341	38305341	A	C	ENSMUST00000213505.1	5	ENSMUSG00000054940	missense	L/R	40	Olfr137	ENSMUST00000213505.1:c.119T>G	ENSMUSP00000150173.1:p.Leu40Arg	H-2-Kb	9	4	8	LIFYMMTRM	LIFYMMTLM	NetMHC	93.53	162.63	1.739	195	0.297	113.669	155.313	1.366	162.63	93.53	313.4	100.5	134.3105106	130.951356	147.9960077	126.8381795	PW2020T2	0.285714286	1.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.313	195	0	0	NA	17qB1	chr17-3148703-94739695	2	1	1	0.597	2	NON-ABERRANT	1	1	sgMsh2	colon
chr10	50649835	50649835	A	G	ENSMUST00000035606.9	5	ENSMUSG00000038774	missense	T/A	548	Ascc3	ENSMUST00000035606.9:c.1642A>G	ENSMUSP00000036726.8:p.Thr548Ala	H-2-Kb	9	10	2	MANYFSKRL	MTNYFSKRL	NetMHC	118.94	142.36	1.197	105	0.048	289.244	361.011	1.248	142.36	118.94	278.3	256.3	443.7210173	322.1884741	608.4851727	471.2485208	PW2020T2	-1.057142857	-0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.061	105	0	0	NA	10qB3	chr10-4413507-130453386	2	1	1	0.597	2	NON-ABERRANT	1	0.204355109	sgMsh2	colon
chr18	61002390	61002390	G	T	ENSMUST00000025520.9	1	ENSMUSG00000052026	missense	P/H	379	Slc6a7	ENSMUST00000025520.9:c.1136C>A	ENSMUSP00000025520.7:p.Pro379His	H-2-Kb	9	7	5	MTMLHLSPF	MTMLPLSPF	NetMHCpan	105.5	432.6	4.1	174	0.046	139.436	459.006	3.292	410.04	128.52	432.6	105.5	485.4114317	150.3522737	741.7370966	177.9303365	PW2020T2	0.957142857	0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.046	174	0	0	NA	18qE1	chr18-3281580-89095437	2	1	1	0.597	2	NON-ABERRANT	1	0.154103853	sgMsh2	colon
chr1	125572486	125572486	CT	C	ENSMUST00000027580.10	1	ENSMUSG00000026342	FS	F/X	246	Slc35f5	ENSMUST00000027580.10:c.745del	ENSMUSP00000027580.4:p.Cys249AlafsTer22	H-2-Kb	9	7	8	AKISFFFAL	AKISFFFCF	NetMHCpan	119	2688.2	22.59	161	0.298	185.526	1243.711	6.704	1874.72	173.76	2688.2	119	500.1612019	197.2922383	612.7029904	275.5814621	PW2020T2	2.528571429	2.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2981	161	0	0	NA	1qE2.3	chr1-4783928-193352278	2	2	0	0.597	2	NON-ABERRANT	1	0.998659966	sgMsh2	colon
chr17	57023276	57023276	TG	T	ENSMUST00000007814.9	1	ENSMUSG00000007670	FS	Q/X	610	Khsrp	ENSMUST00000007814.9:c.1828del	ENSMUSP00000007814.8:p.Gln610SerfsTer125	H-2-Kb	9	95	0	QALVAHSHL	NA	NetMHC	186.8	NA	NA	68	0.176	477.683	NA	NA	NA	186.8	NA	535.5	NA	419.8653158	NA	703.4771574	PW2020T2	0.914285714	0.914285714	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.181	68	0	0	NA	17qD	chr17-3148703-94739695	2	1	1	0.597	2	NON-ABERRANT	1	0.606365159	sgMsh2	colon
chr11	79475817	79475817	T	C	ENSMUST00000071325.8	2	ENSMUSG00000020716	missense	L/S	1592	Nf1	ENSMUST00000071325.8:c.4775T>C	ENSMUSP00000071289.2:p.Leu1592Ser	H-2-Kb	9	11	1	SSIFYQAGT	LSIFYQAGT	NetMHC	190.17	678.76	3.569	202	0.04	474.452	742.171	1.564	678.76	190.17	973.1	471.1	805.5824568	537.1678354	612.7029904	477.8042407	PW2020T2	0.457142857	0.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.045	202	0	0	NA	11qB5	chr11-3133205-121426601	2	1	1	0.597	2	NON-ABERRANT	1	0.150753769	sgMsh2	colon
chr15	101477448	101477448	G	A	ENSMUST00000088049.4	1	ENSMUSG00000067614	missense	R/H	408	Krt86	ENSMUST00000088049.4:c.1223G>A	ENSMUSP00000085365.3:p.Arg408His	H-2-Kb	9	4	8	VEITTYRHL	VEITTYRRL	NetMHC	264.08	251.96	0.954	62	0.339	434.991	394.721	0.907	251.96	264.08	1241.9	1293.3	366.5303993	395.4667729	422.9119919	474.5150595	PW2020T2	-0.3	-0.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.35	62	0	0	NA	15qF2	chr15-3280572-103525164	2	1	1	0.597	2	NON-ABERRANT	1	1	sgMsh2	colon
chr1	173936593	173936593	CT	C	ENSMUST00000129829.7	1	ENSMUSG00000039997	FS	K/X	104	Ifi203	ENSMUST00000129829.7:c.312del	ENSMUSP00000122424.1:p.Gln106LysfsTer56	H-2-Kb	9	17	0	VLLNLFSTI	NA	NetMHCpan	139.7	NA	NA	202	0.158	453.903	NA	NA	NA	311.8	NA	139.7	NA	722.9528931	NA	596.0051329	PW2020T2	1.414285714	2.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1584	202	0	0	NA	1qH3	chr1-4783928-193352278	2	2	0	0.597	2	NON-ABERRANT	1	0.530653266	sgMsh2	colon
chr14	50789927	50789927	CA	C	ENSMUST00000095932.4	5	ENSMUSG00000071470	FS	F/X	239	Ccnb1ip1	ENSMUST00000095932.4:c.717del	ENSMUSP00000093622.3:p.Phe239LeufsTer62	H-2-Kb	9	13	0	VLPQRLNPL	NA	SMMPMBEC	323.035	NA	NA	144	0.056	323.968	NA	NA	NA	324.26	NA	374.2	NA	323.6756285	NA	323.0353127	PW2020T2	-1.014285714	-0.185714286	FALSE	FALSE	FALSE	0	FALSE	1	Mutect2;Vardict	2	0.058	144	0	0	NA	14qC1	chr14-3072210-123592557	2	1	1	0.597	2	NON-ABERRANT	1	0.194304858	sgMsh2	colon
chr1	46793593	46793593	G	T	ENSMUST00000189749.6	5	ENSMUSG00000101337	missense	G/C	3922	Dnah7c	ENSMUST00000189749.6:c.11764G>T	ENSMUSP00000140430.1:p.Gly3922Cys	H-2-Kb	9	11	1	CVYIHGLFL	GVYIHGLFL	NetMHCpan	241	498.1	2.067	257	0.039	283.904	471.422	1.66	1395.98	366.96	498.1	241	444.7438999	253.577082	386.5894518	314.2317036	PW2020T2	1.428571429	1.485714286	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.045	257	0	0	NA	1qC1.1	chr1-4783928-193352278	2	2	0	0.597	2	NON-ABERRANT	1	0.150753769	sgMsh2	colon
chr18	50166902	50166902	T	C	ENSMUST00000025385.6	1	ENSMUSG00000024507	missense	Y/H	409	Hsd17b4	ENSMUST00000025385.6:c.1225T>C	ENSMUSP00000025385.6:p.Tyr409His	H-2-Kb	9	10	2	QHLELYKPL	QYLELYKPL	SMM	346.825	250.098	0.721	142	0.261	418.472	406.684	0.972	478.98	395.12	703.4	923	250.097874	346.8246846	334.3874735	441.8247089	PW2020T2	0.157142857	0.157142857	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.269	142	0	0	NA	18qD1	chr18-3281580-89095437	2	1	1	0.597	2	NON-ABERRANT	1	0.901172529	sgMsh2	colon
chr10	127696321	127696321	G	T	ENSMUST00000048099.4	1	ENSMUSG00000040195	missense	Q/H	414	Nemp1	ENSMUST00000048099.4:c.1242G>T	ENSMUSP00000045988.4:p.Gln414His	H-2-Kb	9	7	5	SIFTHDEEL	SIFTQDEEL	SMMPMBEC	233.48	769.573	3.296	120	0.317	334.988	1263.597	3.772	1757.62	433.25	2335.7	421.6	724.6194716	248.3762124	769.5733148	233.4801695	PW2020T2	-1.114285714	-0.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.319	120	0	0	NA	10qD3	chr10-4413507-130453386	2	1	1	0.597	2	NON-ABERRANT	1	1	sgMsh2	colon
chr14	50789927	50789927	CA	C	ENSMUST00000095932.4	5	ENSMUSG00000071470	FS	F/X	239	Ccnb1ip1	ENSMUST00000095932.4:c.717del	ENSMUSP00000093622.3:p.Phe239LeufsTer62	H-2-Kb	9	5	7	VQFRPFLCV	VQFRPFFVC	NetMHCpan	206.3	998.5	4.84	144	0.056	443.087	1576.436	3.558	2571.9	441.43	998.5	206.3	1683.10031	444.7438999	1469.772103	490.0608399	PW2020T2	1.428571429	1.428571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.058	144	0	0	NA	14qC1	chr14-3072210-123592557	2	1	1	0.597	2	NON-ABERRANT	1	0.194304858	sgMsh2	colon
chr13	22772788	22772788	T	C	ENSMUST00000227136.1	NA	ENSMUSG00000071493	missense	I/V	180	Vmn1r208	ENSMUST00000227136.1:c.538A>G	ENSMUSP00000153904.1:p.Ile180Val	H-2-Kb	9	8	4	IKWVFLILM	IKWIFLILM	SMM	191.034	231.265	1.211	201	0.104	349.967	394.475	1.127	555.47	462.66	3142	2613.5	231.2650474	191.0337056	233.4801695	237.2739171	PW2020T2	2.871428571	2.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.116	201	0	0	NA	13qA3.1	chr13-3559926-119495179	2	1	1	0.597	2	NON-ABERRANT	1	0.388609715	sgMsh2	colon
chr16	34198458	34198458	CG	C	ENSMUST00000114960.8	1	ENSMUSG00000061751	FS	P/X	1311	Kalrn	ENSMUST00000114960.8:c.3933del	ENSMUSP00000110611.2:p.Gly1312AlafsTer65	H-2-Kb	9	58	0	TNFRCMSPT	NA	NetMHCpan	449.7	NA	NA	133	0.105	478.174	NA	NA	NA	503.19	NA	449.7	NA	642.8505207	NA	453.1583638	PW2020T2	-0.057142857	-0.057142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.126	133	0	0	NA	16qB3	chr16-3592317-97850976	2	1	1	0.597	2	NON-ABERRANT	1	0.422110553	sgMsh2	colon
chr1	125572486	125572486	CT	C	ENSMUST00000027580.10	1	ENSMUSG00000026342	FS	F/X	246	Slc35f5	ENSMUST00000027580.10:c.745del	ENSMUSP00000027580.4:p.Cys249AlafsTer22	H-2-Kb	10	9	6	ISFFFALCGF	ISFFFCFVWF	NetMHCpan	96.7	706.2	7.303	161	0.298	296.321	449.106	1.516	384.96	159.27	706.2	96.7	513.2512314	575.8773533	376.5823836	433.3711535	PW2020T2	2.3	2.528571429	FALSE	FALSE	FALSE	1	FALSE	0	Strelka2;Vardict	2	0.2981	161	0	0	NA	1qE2.3	chr1-4783928-193352278	2	2	0	0.597	2	NON-ABERRANT	1	0.998659966	sgMsh2	colon
chr6	124819436	124819436	C	T	ENSMUST00000047510.9	1	ENSMUSG00000038429	missense	D/N	567	Usp5	ENSMUST00000047510.9:c.1699G>A	ENSMUSP00000041299.3:p.Asp567Asn	H-2-Db	9	7	5	ASFPNYLVI	ASFPDYLVI	NetMHCpan	30.1	1230.6	40.884	134	0.306	71.902	1697.655	23.611	2524.89	59.36	1230.6	30.1	1826.50136	94.75889768	1568.808739	84.4442339	PW2020T2	1.271428571	1.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.302	134	0	0	NA	6qF2	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	1	sgMsh2	colon
chr2	172474169	172474169	T	C	ENSMUST00000029007.2	1	ENSMUSG00000027505	missense	Y/H	155	Fam209	ENSMUST00000029007.2:c.463T>C	ENSMUSP00000029007.2:p.Tyr155His	H-2-Db	9	8	4	TNLHNNVTI	TNLYNNVTI	SMMPMBEC	284.82	305.893	1.074	121	0.264	392.992	333.897	0.85	464.56	413.06	306.7	420.9	361.0937737	372.9237133	305.8933249	284.8196838	PW2020T2	0.228571429	0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.268	121	0	0	NA	2qH3	chr2-4513773-181815659	2	1	1	0.597	2	NON-ABERRANT	1	0.897822446	sgMsh2	colon
chr6	136840191	136840191	T	C	ENSMUST00000203499.1	5	ENSMUSG00000047515	missense	M/T	143	BC049715	ENSMUST00000203499.1:c.428T>C	ENSMUSP00000145015.1:p.Met143Thr	H-2-Db	9	7	5	LSLLTQFPI	LSLLMQFPI	NetMHCpan	447	197.2	0.441	114	0.421	474.304	149.485	0.315	281.94	942.55	197.2	447	101.7700528	496.158002	86.01416942	452.4493827	PW2020T2	1.3	1.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.396	114	0	0	NA	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.663316583	sgMsh2	colon
chr2	24187191	24187191	GA	G	ENSMUST00000057567.2	1	ENSMUSG00000044103	FS	E/X	5	Il1f9	ENSMUST00000057567.2:c.23del	ENSMUSP00000053391.2:p.Asn8ThrfsTer60	H-2-Kb	8	22	0	LGYLYLQL	NA	NetMHC	5.88	NA	NA	168	0.28	10.51	NA	NA	NA	5.88	NA	7	NA	17.08991883	NA	14.0197413	PW2020T2	0.7	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.267	168	0	0	NA	2qA3	chr2-4513773-181815659	2	1	1	0.597	2	NON-ABERRANT	1	0.894472362	sgMsh2	colon
chr3	35831499	35831499	AT	A	ENSMUST00000029257.14	1	ENSMUSG00000037400	FS	Y/X	880	Atp11b	ENSMUST00000029257.14:c.2647del	ENSMUSP00000029257.8:p.Tyr883IlefsTer30	H-2-Kb	8	9	6	VQYFFIRM	VQYFFYKN	NetMHCpan	6.1	233.5	38.279	37	0.108	8.678	155.361	17.902	348.39	7.68	233.5	6.1	55.94225905	9.676983488	77.22181412	10.95821962	PW2020T2	0.385714286	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1081	37	0	0	NA	3qB	chr3-5403921-159911278	2	1	1	0.597	2	NON-ABERRANT	1	0.362144054	sgMsh2	colon
chr2	87737497	87737497	G	A	ENSMUST00000214573.1	5	ENSMUSG00000075149	missense	L/F	276	Olfr1138	ENSMUST00000214573.1:c.826C>T	ENSMUSP00000148941.1:p.Leu276Phe	H-2-Kb	8	9	3	TSFFYTLV	TSLFYTLV	NetMHCpan	5.7	24.6	4.316	228	0.294	14.396	59.351	4.123	41.48	10.31	24.6	5.7	77.22181412	18.48161845	81.04757034	18.73872337	PW2020T2	1.542857143	1.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.293	228	0	0	NA	2qD	chr2-4513773-181815659	2	1	1	0.597	2	NON-ABERRANT	1	0.981574539	sgMsh2	colon
chr6	66553717	66553717	GA	G	ENSMUST00000079584.2	1	ENSMUSG00000062905	FS	F/X	25	Vmn1r32	ENSMUST00000079584.2:c.74del	ENSMUSP00000078536.1:p.Phe25SerfsTer5	H-2-Kb	8	6	6	IFLLFSTL	IFLLFFYT	SMM	9.767	162.458	16.634	323	0.279	11.025	714.944	64.849	1267.43	10.68	4267.2	18.9	162.4575876	9.766523514	121.2662646	11.36946424	PW2020T2	2.214285714	2.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.285	323	0	0	NA	6qC1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.954773869	sgMsh2	colon
chr2	111873686	111873686	A	C	ENSMUST00000213405.1	5	ENSMUSG00000074955	missense	H/Q	56	Olfr1305	ENSMUST00000213405.1:c.168T>G	ENSMUSP00000149215.1:p.His56Gln	H-2-Kb	8	11	1	QSPMYFLL	HSPMYFLL	NetMHC	18.38	51.12	2.781	203	0.02	69.764	93.906	1.346	51.12	18.38	47.8	31.2	176.4980859	108.3278191	136.691025	133.5795574	PW2020T2	1.228571429	1.228571429	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.029	203	0	0	NA	2qE3	chr2-4513773-181815659	2	1	1	0.597	2	NON-ABERRANT	1	0.097152429	sgMsh2	colon
chr6	90559322	90559322	G	A	ENSMUST00000130418.7	1	ENSMUSG00000030088	missense	V/M	70	Aldh1l1	ENSMUST00000130418.7:c.208G>A	ENSMUSP00000114304.1:p.Val70Met	H-2-Kb	8	10	2	VMAKYQAL	VVAKYQAL	NetMHC	23.1	24.34	1.054	74	0.108	56.917	48.99	0.861	24.34	23.1	35.5	41.6	62.47985313	72.2337231	90.93686959	111.8767908	PW2020T2	0.085714286	0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.114	74	0	0	NA	6qD1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.381909548	sgMsh2	colon
chr2	87737497	87737497	G	A	ENSMUST00000214573.1	5	ENSMUSG00000075149	missense	L/F	276	Olfr1138	ENSMUST00000214573.1:c.826C>T	ENSMUSP00000148941.1:p.Leu276Phe	H-2-Kb	8	8	4	VTSFFYTL	VTSLFYTL	NetMHCpan	11.5	15.1	1.313	228	0.294	37.491	29.056	0.775	18.05	30.03	15.1	11.5	40.06268017	44.95106648	47.39581548	56.9823033	PW2020T2	0.842857143	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.293	228	0	0	NA	2qD	chr2-4513773-181815659	2	1	1	0.597	2	NON-ABERRANT	1	0.981574539	sgMsh2	colon
chr2	69510466	69510466	T	TG	ENSMUST00000080953.11	5	ENSMUSG00000027070	FS	-/X	1021-1022	Lrp2	ENSMUST00000080953.11:c.3063dup	ENSMUSP00000079752.5:p.Thr1022HisfsTer24	H-2-Kb	8	15	0	VWLLFLSL	NA	NetMHC	32.39	NA	NA	98	0.255	33.984	NA	NA	NA	32.39	NA	115.6	NA	33.55366776	NA	34.41438398	PW2020T2	2.328571429	2.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.262	98	0	0	NA	2qC2	chr2-4513773-181815659	2	1	1	0.597	2	NON-ABERRANT	1	0.877721943	sgMsh2	colon
chr5	72582603	72582603	TA	T	ENSMUST00000031124.6	1	ENSMUSG00000060204	FS	F/X	95	Slc10a4l	ENSMUST00000031124.6:c.285del	ENSMUSP00000031124.4:p.Phe95LeufsTer13	H-2-Kb	8	4	8	TVYVVAIL	TVYVVAIF	NetMHC	40.52	804.39	19.852	272	0.235	71.945	973.292	13.528	804.39	40.52	483.6	59.8	1366.91025	84.08915726	1142.19433	90.93686959	PW2020T2	3.057142857	3.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.247	272	0	0	NA	5qC3.2	chr5-3673201-150769641	2	1	1	0.597	2	NON-ABERRANT	1	0.827470687	sgMsh2	colon
chr2	111621763	111621763	GA	G	ENSMUST00000213398.1	2	ENSMUSG00000094858	FS	S/X	104	Olfr1297	ENSMUST00000213398.1:c.310del	ENSMUSP00000150543.1:p.Ser104ProfsTer14	H-2-Kb	8	8	4	IFFPTALL	NA	NetMHC	50.87	NA	NA	329	0.1	57.78	NA	NA	NA	50.87	NA	67.4	NA	53.79476318	NA	61.76465217	PW2020T2	1.814285714	1.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.105	329	0	0	NA	2qE3	chr2-4513773-181815659	2	1	1	0.597	2	NON-ABERRANT	1	0.351758794	sgMsh2	colon
chr6	136919892	136919892	T	C	ENSMUST00000032343.6	1	ENSMUSG00000030219	missense	N/S	104	Erp27	ENSMUST00000032343.6:c.311A>G	ENSMUSP00000032343.6:p.Asn104Ser	H-2-Kb	8	11	1	SSICLFRL	NSICLFRL	NetMHCpan	37.8	383.5	10.146	113	0.496	62.663	464.797	7.417	1302.26	51.41	383.5	37.8	469.6128803	73.91626265	459.9811133	81.04757034	PW2020T2	1.728571429	1.728571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.505	113	0	0	NA	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	1	sgMsh2	colon
chr2	36569422	36569422	G	A	ENSMUST00000215879.1	5	ENSMUSG00000096822	missense	A/T	275	Olfr344	ENSMUST00000215879.1:c.823G>A	ENSMUSP00000151202.1:p.Ala275Thr	H-2-Kb	8	10	2	VTVMYTVV	VAVMYTVV	NetMHCpan	62.7	75.6	1.206	299	0.271	111.092	148.146	1.334	95.04	94.91	75.6	62.7	231.0681036	149.534017	201.251905	127.2740898	PW2020T2	1.685714286	1.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.274	299	0	0	NA	2qB	chr2-4513773-181815659	2	1	1	0.597	2	NON-ABERRANT	1	0.917922948	sgMsh2	colon
chr2	130975993	130975993	G	T	ENSMUST00000028781.8	1	ENSMUSG00000027312	missense	L/F	822	Atrn	ENSMUST00000028781.8:c.2466G>T	ENSMUSP00000028781.8:p.Leu822Phe	H-2-Kb	8	7	5	HNAFFASL	HNAFLASL	NetMHCpan	38.4	437.9	11.404	195	0.318	102.784	1246.738	12.13	2042.14	95.48	437.9	38.4	1160.753495	110.0880046	1332.723329	124.9510759	PW2020T2	1.242857143	1.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.324	195	0	0	NA	2qF1	chr2-4513773-181815659	2	1	1	0.597	2	NON-ABERRANT	1	1	sgMsh2	colon
chr2	87949278	87949278	CA	C	ENSMUST00000216191.1	5	ENSMUSG00000075144	FS	F/X	318	Olfr1156	ENSMUST00000216191.1:c.954del	ENSMUSP00000151183.1:p.Phe318LeufsTer10	H-2-Kb	8	4	8	SLLDFFFL	SLLDFFFF	SMM	83.896	1363.766	16.255	59	0.39	104.271	1264.939	12.131	2058.09	173.5	808.3	115.7	1363.766443	83.89575756	1166.11129	92.84104069	PW2020T2	2.328571429	2.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.398	59	0	0	NA	2qD	chr2-4513773-181815659	2	1	1	0.597	2	NON-ABERRANT	1	0.666666667	sgMsh2	colon
chr2	24187191	24187191	GA	G	ENSMUST00000057567.2	1	ENSMUSG00000044103	FS	E/X	5	Il1f9	ENSMUST00000057567.2:c.23del	ENSMUSP00000053391.2:p.Asn8ThrfsTer60	H-2-Kb	8	59	0	GSFVIRPL	NA	NetMHCpan	120.6	NA	NA	168	0.28	171.916	NA	NA	NA	212.69	NA	120.6	NA	256.2949211	NA	131.1414557	PW2020T2	1.2	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.267	168	0	0	NA	2qA3	chr2-4513773-181815659	2	1	1	0.597	2	NON-ABERRANT	1	0.894472362	sgMsh2	colon
chr6	137368083	137368083	C	T	ENSMUST00000077115.12	1	ENSMUSG00000030223	missense	T/M	29	Ptpro	ENSMUST00000077115.12:c.86C>T	ENSMUSP00000076364.6:p.Thr29Met	H-2-Kb	8	9	3	VTMFHVAV	VTTFHVAV	NetMHCpan	64.8	299.4	4.62	124	0.532	167.627	432.543	2.58	745.93	221.49	299.4	64.8	351.3500341	163.9607892	513.7360001	171.2931516	PW2020T2	1.571428571	1.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.509	124	0	0	NA	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	1	sgMsh2	colon
chr2	153399446	153399446	AG	A	ENSMUST00000109790.1	5	ENSMUSG00000042548	FS	G/X	640	Asxl1	ENSMUST00000109790.1:c.1925del	ENSMUSP00000105413.1:p.Gly642ValfsTer58	H-2-Kb	8	33	0	VVMVVRPV	NA	NetMHC	253.25	NA	NA	79	0.101	329.794	NA	NA	NA	253.25	NA	280.5	NA	467.4552051	NA	379.0879676	PW2020T2	1.8	1.8	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1013	79	0	0	NA	2qH1	chr2-4513773-181815659	2	1	1	0.597	2	NON-ABERRANT	1	0.339363484	sgMsh2	colon
chr2	153399446	153399446	AG	A	ENSMUST00000109790.1	5	ENSMUSG00000042548	FS	G/X	640	Asxl1	ENSMUST00000109790.1:c.1925del	ENSMUSP00000105413.1:p.Gly642ValfsTer58	H-2-Kb	8	36	0	VVRPVATL	NA	SMM	210.737	NA	NA	79	0.101	296.367	NA	NA	NA	295.06	NA	306	NA	210.7366151	NA	297.6733808	PW2020T2	1.028571429	1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1013	79	0	0	NA	2qH1	chr2-4513773-181815659	2	1	1	0.597	2	NON-ABERRANT	1	0.339363484	sgMsh2	colon
chr3	35831499	35831499	AT	A	ENSMUST00000029257.14	1	ENSMUSG00000037400	FS	Y/X	880	Atp11b	ENSMUST00000029257.14:c.2647del	ENSMUSP00000029257.8:p.Tyr883IlefsTer30	H-2-Kb	8	23	0	SFYISSTV	NA	SMM	267.756	NA	NA	37	0.108	369.02	NA	NA	NA	308.76	NA	456.6	NA	267.7564861	NA	429.2793522	PW2020T2	1.128571429	1.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1081	37	0	0	NA	3qB	chr3-5403921-159911278	2	1	1	0.597	2	NON-ABERRANT	1	0.362144054	sgMsh2	colon
chr2	87949278	87949278	CA	C	ENSMUST00000216191.1	5	ENSMUSG00000075144	FS	F/X	318	Olfr1156	ENSMUST00000216191.1:c.954del	ENSMUSP00000151183.1:p.Phe318LeufsTer10	H-2-Kb	8	9	3	FFLFLAKL	NA	SMM	236.45	NA	NA	59	0.39	309.038	NA	NA	NA	347.22	NA	374.1	NA	236.4503711	NA	270.8569601	PW2020T2	2.128571429	2.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.398	59	0	0	NA	2qD	chr2-4513773-181815659	2	1	1	0.597	2	NON-ABERRANT	1	0.666666667	sgMsh2	colon
chr2	69510466	69510466	T	TG	ENSMUST00000080953.11	5	ENSMUSG00000027070	FS	-/X	1021-1022	Lrp2	ENSMUST00000080953.11:c.3063dup	ENSMUSP00000079752.5:p.Thr1022HisfsTer24	H-2-Kb	8	27	0	VCAQYLPL	NA	SMMPMBEC	111.877	NA	NA	98	0.255	136.303	NA	NA	NA	391.9	NA	154.1	NA	118.5059074	NA	111.8767908	PW2020T2	0.785714286	0.842857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.262	98	0	0	NA	2qC2	chr2-4513773-181815659	2	1	1	0.597	2	NON-ABERRANT	1	0.877721943	sgMsh2	colon
chr2	111621763	111621763	GA	G	ENSMUST00000213398.1	2	ENSMUSG00000094858	FS	S/X	104	Olfr1297	ENSMUST00000213398.1:c.310del	ENSMUSP00000150543.1:p.Ser104ProfsTer14	H-2-Kb	8	7	5	QIFFPTAL	QIFFSHCI	NetMHCpan	207.9	1950.3	9.381	329	0.1	333.232	4086.626	12.264	4594.43	460.39	1950.3	207.9	3578.821189	243.0748352	4940.148455	423.3894187	PW2020T2	1.914285714	1.914285714	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.105	329	0	0	NA	2qE3	chr2-4513773-181815659	2	1	1	0.597	2	NON-ABERRANT	1	0.351758794	sgMsh2	colon
chr2	29065547	29065547	TA	T	ENSMUST00000100237.3	5	ENSMUSG00000026803	FS	K/X	308	Ttf1	ENSMUST00000100237.3:c.929del	ENSMUSP00000097809.3:p.Asn310ThrfsTer72	H-2-Kb	8	71	0	SLLLLPHL	NA	NetMHCpan	222.3	NA	NA	82	0.305	491.297	NA	NA	NA	529.09	NA	222.3	NA	502.041941	NA	480.5515695	PW2020T2	2.028571429	2.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.317	82	0	0	NA	2qA3	chr2-4513773-181815659	2	1	1	0.597	2	NON-ABERRANT	1	1	sgMsh2	colon
chr6	120876227	120876227	C	A	ENSMUST00000009256.3	1	ENSMUSG00000009112	missense	Q/K	158	Bcl2l13	ENSMUST00000009256.3:c.472C>A	ENSMUSP00000009256.2:p.Gln158Lys	H-2-Kb	8	8	4	VLLKHLLL	VLLQHLLL	NetMHCpan	200.6	235.5	1.174	166	0.102	341.315	237.62	0.696	574.57	587.25	235.5	200.6	213.1768301	326.3923717	239.7397234	356.2377999	PW2020T2	1.7	1.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.107	166	0	0	NA	6qF1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.358458961	sgMsh2	colon
chr3	35831499	35831499	AT	A	ENSMUST00000029257.14	1	ENSMUSG00000037400	FS	Y/X	880	Atp11b	ENSMUST00000029257.14:c.2647del	ENSMUSP00000029257.8:p.Tyr883IlefsTer30	H-2-Kb	8	12	3	FFIRMCAL	NA	SMM	258.666	NA	NA	37	0.108	478.759	NA	NA	NA	640.75	NA	990.3	NA	258.6663888	NA	316.7670499	PW2020T2	1.828571429	1.828571429	FALSE	FALSE	FALSE	1	FALSE	0	Strelka2;Vardict	2	0.1081	37	0	0	NA	3qB	chr3-5403921-159911278	2	1	1	0.597	2	NON-ABERRANT	1	0.362144054	sgMsh2	colon
chr2	111621763	111621763	GA	G	ENSMUST00000213398.1	2	ENSMUSG00000094858	FS	S/X	104	Olfr1297	ENSMUST00000213398.1:c.310del	ENSMUSP00000150543.1:p.Ser104ProfsTer14	H-2-Kb	8	5	7	MSQIFFPT	MSQIFFSH	SMMPMBEC	222.71	1073.347	4.819	329	0.1	477.312	1983.315	4.155	2039.43	985.58	1927.2	680	2397.397234	274.6249558	1073.346637	222.7101447	PW2020T2	0.5	0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.105	329	0	0	NA	2qE3	chr2-4513773-181815659	2	1	1	0.597	2	NON-ABERRANT	1	0.351758794	sgMsh2	colon
chr2	87949278	87949278	CA	C	ENSMUST00000216191.1	5	ENSMUSG00000075144	FS	F/X	318	Olfr1156	ENSMUST00000216191.1:c.954del	ENSMUSP00000151183.1:p.Phe318LeufsTer10	H-2-Kb	8	6	6	LDFFFLFL	LDFFFFVF	SMMPMBEC	72.734	1053.756	14.488	59	0.39	172.964	2235.144	12.923	4157.68	1832.09	2971.5	271.5	1498.787285	74.42862571	1053.755853	72.73442335	PW2020T2	2.185714286	2.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.398	59	0	0	NA	2qD	chr2-4513773-181815659	2	1	1	0.597	2	NON-ABERRANT	1	0.666666667	sgMsh2	colon
chr5	101809944	101809944	AT	A	ENSMUST00000031273.8	1	ENSMUSG00000029330	FS	F/X	261	Cds1	ENSMUST00000031273.8:c.789del	ENSMUSP00000031273.8:p.Phe263LeufsTer6	H-2-Kb	9	5	9	TAYLFGFFL	TAYLFGFFF	NetMHC	31.68	138.31	4.366	231	0.186	63.859	160.906	2.52	138.31	31.68	321.8	41.2	145.9183802	86.51870294	175.8935847	101.6833861	PW2020T2	2.042857143	2.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1861	231	0	0	NA	5qE4	chr5-3673201-150769641	2	1	1	0.597	2	NON-ABERRANT	1	0.623450586	sgMsh2	colon
chr2	87949278	87949278	CA	C	ENSMUST00000216191.1	5	ENSMUSG00000075144	FS	F/X	318	Olfr1156	ENSMUST00000216191.1:c.954del	ENSMUSP00000151183.1:p.Phe318LeufsTer10	H-2-Kb	9	8	4	FFFLFLAKL	NA	NetMHC	47.26	NA	NA	59	0.39	62.945	NA	NA	NA	47.26	NA	202.4	NA	60.68900259	NA	65.20036095	PW2020T2	2.128571429	2.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.398	59	0	0	NA	2qD	chr2-4513773-181815659	2	1	1	0.597	2	NON-ABERRANT	1	0.666666667	sgMsh2	colon
chr2	87737497	87737497	G	A	ENSMUST00000214573.1	5	ENSMUSG00000075149	missense	L/F	276	Olfr1138	ENSMUST00000214573.1:c.826C>T	ENSMUSP00000148941.1:p.Leu276Phe	H-2-Kb	9	8	4	VTSFFYTLV	VTSLFYTLV	NetMHCpan	40.8	42.2	1.034	228	0.294	77.204	67.99	0.881	32.15	53.69	42.2	40.8	93.77995068	100.7186741	109.2068801	103.8125837	PW2020T2	1.542857143	1.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.293	228	0	0	NA	2qD	chr2-4513773-181815659	2	1	1	0.597	2	NON-ABERRANT	1	0.981574539	sgMsh2	colon
chr2	87737497	87737497	G	A	ENSMUST00000214573.1	5	ENSMUSG00000075149	missense	L/F	276	Olfr1138	ENSMUST00000214573.1:c.826C>T	ENSMUSP00000148941.1:p.Leu276Phe	H-2-Kb	9	7	5	KVTSFFYTL	KVTSLFYTL	NetMHCpan	31	278.2	8.974	228	0.294	129.583	716.211	5.527	738.82	70.32	278.2	31	693.6014622	188.8469608	1135.664369	348.5378918	PW2020T2	0.842857143	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.293	228	0	0	NA	2qD	chr2-4513773-181815659	2	1	1	0.597	2	NON-ABERRANT	1	0.981574539	sgMsh2	colon
chr6	136919892	136919892	T	C	ENSMUST00000032343.6	1	ENSMUSG00000030219	missense	N/S	104	Erp27	ENSMUST00000032343.6:c.311A>G	ENSMUSP00000032343.6:p.Asn104Ser	H-2-Kb	9	11	1	SSICLFRLV	NSICLFRLV	NetMHC	73.27	991.69	13.535	113	0.496	233.54	1217.085	5.211	991.69	73.27	847.4	132.8	1442.480663	334.2796971	1567.653224	391.0659467	PW2020T2	2.442857143	2.442857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.505	113	0	0	NA	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	1	sgMsh2	colon
chr2	29065547	29065547	TA	T	ENSMUST00000100237.3	5	ENSMUSG00000026803	FS	K/X	308	Ttf1	ENSMUST00000100237.3:c.929del	ENSMUSP00000097809.3:p.Asn310ThrfsTer72	H-2-Kb	9	70	0	TSLLLLPHL	NA	NetMHC	78.56	NA	NA	82	0.305	145.672	NA	NA	NA	78.56	NA	83.8	NA	207.5439127	NA	211.4706012	PW2020T2	2.028571429	2.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.317	82	0	0	NA	2qA3	chr2-4513773-181815659	2	1	1	0.597	2	NON-ABERRANT	1	1	sgMsh2	colon
chr6	66553717	66553717	GA	G	ENSMUST00000079584.2	1	ENSMUSG00000062905	FS	F/X	25	Vmn1r32	ENSMUST00000079584.2:c.74del	ENSMUSP00000078536.1:p.Phe25SerfsTer5	H-2-Kb	9	5	7	NIFLLFSTL	NIFLLFFYT	NetMHCpan	45.1	6590.6	146.133	323	0.279	131.772	2704.993	20.528	4292.48	82.78	6590.6	45.1	997.9527977	180.7631913	1117.506351	217.3952246	PW2020T2	2.214285714	2.314285714	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;Vardict	3	0.285	323	0	0	NA	6qC1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.954773869	sgMsh2	colon
chr6	48620732	48620732	A	T	ENSMUST00000204095.2	2	ENSMUSG00000007216	missense	Q/H	513	Zfp775	ENSMUST00000204095.2:c.1539A>T	ENSMUSP00000145192.1:p.Gln513His	H-2-Kb	9	7	5	RGFRHKQHL	RGFRQKQHL	NetMHC	96.49	707.72	7.335	83	0.048	333.448	1207.117	3.62	707.72	96.49	598.8	114.5	1706.514568	584.9382211	1820.748664	552.3953321	PW2020T2	-1.671428571	-1.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.05	83	0	0	NA	6qB2.3	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.167504188	sgMsh2	colon
chr3	35831499	35831499	AT	A	ENSMUST00000029257.14	1	ENSMUSG00000037400	FS	Y/X	880	Atp11b	ENSMUST00000029257.14:c.2647del	ENSMUSP00000029257.8:p.Tyr883IlefsTer30	H-2-Kb	9	8	7	LVQYFFIRM	LVQYFFYKN	NetMHC	97.76	6633.21	67.852	37	0.108	119.447	4366.341	36.555	6633.21	97.76	12431.5	98.9	2099.47158	139.9941861	1384.363053	166.4370463	PW2020T2	0.385714286	1.9	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1081	37	0	0	NA	3qB	chr3-5403921-159911278	2	1	1	0.597	2	NON-ABERRANT	1	0.362144054	sgMsh2	colon
chr19	41238772	41238772	G	T	ENSMUST00000237871.1	NA	ENSMUSG00000025016	missense	L/M	287	Tm9sf3	ENSMUST00000237871.1:c.859C>A	ENSMUSP00000158318.1:p.Leu287Met	H-2-Kb	9	8	4	SHPMIFSSL	SHPLIFSSL	NetMHC	110.89	120.5	1.087	117	0.034	438.897	395.398	0.901	120.5	110.89	179.7	141.4	611.0967866	736.3935909	757.2686885	776.694089	PW2020T2	1.4	1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.045	117	0	0	NA	19qC3	chr19-3404916-61225035	2	1	1	0.597	2	NON-ABERRANT	1	0.150753769	sgMsh2	colon
chr2	37787413	37787413	G	A	ENSMUST00000050372.9	5	ENSMUSG00000035403	missense	A/T	306	Crb2	ENSMUST00000050372.9:c.916G>A	ENSMUSP00000058007.7:p.Ala306Thr	H-2-Kb	9	11	1	TGFLCSCPL	AGFLCSCPL	NetMHCpan	92.3	99.6	1.079	48	0.396	211.956	250.586	1.182	145.45	121.84	99.6	92.3	355.7214058	302.0716724	402.9489236	320.0737072	PW2020T2	1.857142857	1.857142857	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.391	48	0	0	NA	2qB	chr2-4513773-181815659	2	1	1	0.597	2	NON-ABERRANT	1	0.654941374	sgMsh2	colon
chr2	111621763	111621763	GA	G	ENSMUST00000213398.1	2	ENSMUSG00000094858	FS	S/X	104	Olfr1297	ENSMUST00000213398.1:c.310del	ENSMUSP00000150543.1:p.Ser104ProfsTer14	H-2-Kb	9	6	6	SQIFFPTAL	SQIFFSHCI	NetMHCpan	68	385.5	5.669	329	0.1	324.321	1540.586	4.75	1694.32	148.48	385.5	68	1435.853066	500.1612019	1645.318572	582.4383998	PW2020T2	1.914285714	1.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.105	329	0	0	NA	2qE3	chr2-4513773-181815659	2	1	1	0.597	2	NON-ABERRANT	1	0.351758794	sgMsh2	colon
chr3	35831499	35831499	AT	A	ENSMUST00000029257.14	1	ENSMUSG00000037400	FS	Y/X	880	Atp11b	ENSMUST00000029257.14:c.2647del	ENSMUSP00000029257.8:p.Tyr883IlefsTer30	H-2-Kb	9	11	4	YFFIRMCAL	NA	NetMHC	156.88	NA	NA	37	0.108	187.533	NA	NA	NA	156.88	NA	255.4	NA	199.5767748	NA	175.4890407	PW2020T2	1.828571429	1.828571429	FALSE	FALSE	FALSE	1	FALSE	0	Strelka2;Vardict	2	0.1081	37	0	0	NA	3qB	chr3-5403921-159911278	2	1	1	0.597	2	NON-ABERRANT	1	0.362144054	sgMsh2	colon
chr2	69510466	69510466	T	TG	ENSMUST00000080953.11	5	ENSMUSG00000027070	FS	-/X	1021-1022	Lrp2	ENSMUST00000080953.11:c.3063dup	ENSMUSP00000079752.5:p.Thr1022HisfsTer24	H-2-Kb	9	14	0	AVWLLFLSL	NA	NetMHC	162.69	NA	NA	98	0.255	179.375	NA	NA	NA	162.69	NA	294.5	NA	182.8563304	NA	175.8935847	PW2020T2	2.328571429	2.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.262	98	0	0	NA	2qC2	chr2-4513773-181815659	2	1	1	0.597	2	NON-ABERRANT	1	0.877721943	sgMsh2	colon
chr6	137368083	137368083	C	T	ENSMUST00000077115.12	1	ENSMUSG00000030223	missense	T/M	29	Ptpro	ENSMUST00000077115.12:c.86C>T	ENSMUSP00000076364.6:p.Thr29Met	H-2-Kb	9	8	4	IVTMFHVAV	IVTTFHVAV	NetMHC	175.22	201.3	1.149	124	0.532	284.738	337.908	1.187	201.3	175.22	154	175.7	574.2618953	478.7513372	474.5150595	393.7766863	PW2020T2	1.571428571	1.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.509	124	0	0	NA	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	1	sgMsh2	colon
chr4	32580087	32580087	AG	A	ENSMUST00000108180.8	5	ENSMUSG00000040270	FS	G/X	771	Bach2	ENSMUST00000108180.8:c.2314del	ENSMUSP00000103815.2:p.Ala772ArgfsTer38	H-2-Kb	9	22	0	ATPLRIVPL	NA	NetMHCpan	183.9	NA	NA	75	0.107	275.673	NA	NA	NA	209.17	NA	183.9	NA	398.2080176	NA	342.1763584	PW2020T2	1.228571429	1.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.121	75	0	0	NA	4qA5	chr4-3738956-156233518	2	1	1	0.597	2	NON-ABERRANT	1	0.405360134	sgMsh2	colon
chr2	37787413	37787413	G	A	ENSMUST00000050372.9	5	ENSMUSG00000035403	missense	A/T	306	Crb2	ENSMUST00000050372.9:c.916G>A	ENSMUSP00000058007.7:p.Ala306Thr	H-2-Kb	9	5	7	FSFSHATGF	FSFSHAAGF	NetMHCpan	86.1	49.6	0.576	48	0.396	186.208	108.092	0.58	96.48	212.42	49.6	86.1	119.7043685	159.9963223	178.3405083	242.8007366	PW2020T2	0.328571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.391	48	0	0	NA	2qB	chr2-4513773-181815659	2	1	1	0.597	2	NON-ABERRANT	1	0.654941374	sgMsh2	colon
chr6	124819436	124819436	C	T	ENSMUST00000047510.9	1	ENSMUSG00000038429	missense	D/N	567	Usp5	ENSMUST00000047510.9:c.1699G>A	ENSMUSP00000041299.3:p.Asp567Asn	H-2-Kb	9	7	5	ASFPNYLVI	ASFPDYLVI	NetMHCpan	104.6	459.1	4.389	134	0.306	234.086	567.677	2.425	1552.37	224.25	459.1	104.6	676.2542383	296.558243	458.4056903	243.9214539	PW2020T2	1.271428571	1.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.302	134	0	0	NA	6qF2	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	1	sgMsh2	colon
chr2	111621763	111621763	GA	G	ENSMUST00000213398.1	2	ENSMUSG00000094858	FS	S/X	104	Olfr1297	ENSMUST00000213398.1:c.310del	ENSMUSP00000150543.1:p.Ser104ProfsTer14	H-2-Kb	9	7	5	QIFFPTALL	NA	SMM	212.378	NA	NA	329	0.1	263.68	NA	NA	NA	230.86	NA	296.5	NA	212.3782315	NA	372.6061339	PW2020T2	1.814285714	1.914285714	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.105	329	0	0	NA	2qE3	chr2-4513773-181815659	2	1	1	0.597	2	NON-ABERRANT	1	0.351758794	sgMsh2	colon
chr2	87949278	87949278	CA	C	ENSMUST00000216191.1	5	ENSMUSG00000075144	FS	F/X	318	Olfr1156	ENSMUST00000216191.1:c.954del	ENSMUSP00000151183.1:p.Phe318LeufsTer10	H-2-Kb	9	4	8	SLLDFFFLF	SLLDFFFFV	SMM	232.333	567.688	2.443	59	0.39	282.607	535.794	1.896	401.4	268.56	503.9	333.5	567.6883738	232.3325184	638.631006	296.6538575	PW2020T2	2.185714286	2.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.398	59	0	0	NA	2qD	chr2-4513773-181815659	2	1	1	0.597	2	NON-ABERRANT	1	0.666666667	sgMsh2	colon
chr6	132909833	132909833	G	T	ENSMUST00000076119.5	NA	ENSMUSG00000059410	missense	W/C	61	Tas2r125	ENSMUST00000076119.5:c.183G>T	ENSMUSP00000075483.5:p.Trp61Cys	H-2-Kb	9	6	6	RIYLLCSTF	RIYLLWSTF	NetMHC	281.82	190.79	0.677	209	0.254	351.543	194.645	0.554	190.79	281.82	198.5	330.6	176.2422384	372.4860392	213.9193154	453.1583638	PW2020T2	1.442857143	1.685714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.244	209	0	0	NA	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.817420436	sgMsh2	colon
chr2	87737497	87737497	G	A	ENSMUST00000214573.1	5	ENSMUSG00000075149	missense	L/F	276	Olfr1138	ENSMUST00000214573.1:c.826C>T	ENSMUSP00000148941.1:p.Leu276Phe	H-2-Kb	9	9	3	TSFFYTLVI	TSLFYTLVI	NetMHCpan	39.3	259.4	6.601	228	0.294	191.926	535.902	2.792	1145.02	282.93	259.4	39.3	634.0302809	226.0008122	437.7740356	157.8519677	PW2020T2	2.3	2.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.293	228	0	0	NA	2qD	chr2-4513773-181815659	2	1	1	0.597	2	NON-ABERRANT	1	0.981574539	sgMsh2	colon
chr6	120876227	120876227	C	A	ENSMUST00000009256.3	1	ENSMUSG00000009112	missense	Q/K	158	Bcl2l13	ENSMUST00000009256.3:c.472C>A	ENSMUSP00000009256.2:p.Gln158Lys	H-2-Kb	9	7	5	LVLLKHLLL	LVLLQHLLL	SMMPMBEC	247.885	571.808	2.307	166	0.102	269.936	674.714	2.5	777.62	290.35	880.5	461.2	503.6281538	249.5226649	571.8077009	247.8848587	PW2020T2	1.7	1.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.107	166	0	0	NA	6qF1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.358458961	sgMsh2	colon
chr3	35831499	35831499	AT	A	ENSMUST00000029257.14	1	ENSMUSG00000037400	FS	Y/X	880	Atp11b	ENSMUST00000029257.14:c.2647del	ENSMUSP00000029257.8:p.Tyr883IlefsTer30	H-2-Kb	9	9	6	VQYFFIRMC	VQYFFYKNV	NetMHCpan	197.8	5.8	0.029	37	0.108	376.631	16.055	0.043	4.72	295.91	5.8	197.8	26.30934282	547.154531	30.84963287	457.3513865	PW2020T2	1.242857143	1.242857143	FALSE	TRUE	FALSE	1	FALSE	0	Strelka2;Vardict	2	0.1081	37	0	0	NA	3qB	chr3-5403921-159911278	2	1	1	0.597	2	NON-ABERRANT	1	0.362144054	sgMsh2	colon
chr2	29065547	29065547	TA	T	ENSMUST00000100237.3	5	ENSMUSG00000026803	FS	K/X	308	Ttf1	ENSMUST00000100237.3:c.929del	ENSMUSP00000097809.3:p.Asn310ThrfsTer72	H-2-Kb	9	26	0	VLMTRRPSL	NA	NetMHCpan	342.8	NA	NA	82	0.305	412.416	NA	NA	NA	489.2	NA	342.8	NA	465.7040341	NA	359.1286062	PW2020T2	-0.914285714	-0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.317	82	0	0	NA	2qA3	chr2-4513773-181815659	2	1	1	0.597	2	NON-ABERRANT	1	1	sgMsh2	colon
chr6	136840191	136840191	T	C	ENSMUST00000203499.1	5	ENSMUSG00000047515	missense	M/T	143	BC049715	ENSMUST00000203499.1:c.428T>C	ENSMUSP00000145015.1:p.Met143Thr	H-2-Kb	9	5	7	TSLSLLTQF	TSLSLLMQF	SMMPMBEC	412.335	457.351	1.109	114	0.421	481.617	470.414	0.977	474.05	508.13	964.9	1030.1	466.7775928	455.1033161	457.3513865	412.3348098	PW2020T2	1.314285714	1.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.396	114	0	0	NA	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.663316583	sgMsh2	colon
chr2	24616912	24616912	G	A	ENSMUST00000041342.11	1	ENSMUSG00000004113	missense	A/V	1886	Cacna1b	ENSMUST00000041342.11:c.5657C>T	ENSMUSP00000037416.5:p.Ala1886Val	H-2-Kb	9	3	9	VSLFHPLKV	VSLFHPLKA	NetMHCpan	300	2278.2	7.594	48	0.125	356.124	1931.747	5.424	3624	509.28	2278.2	300	1585.294672	397.2921646	1087.051201	314.9560825	PW2020T2	0.842857143	1.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.136	48	0	0	NA	2qA3	chr2-4513773-181815659	2	1	1	0.597	2	NON-ABERRANT	1	0.45561139	sgMsh2	colon
chr2	87737497	87737497	G	A	ENSMUST00000214573.1	5	ENSMUSG00000075149	missense	L/F	276	Olfr1138	ENSMUST00000214573.1:c.826C>T	ENSMUSP00000148941.1:p.Leu276Phe	H-2-Kb	9	11	1	FFYTLVIPM	LFYTLVIPM	SMM	320.708	311.968	0.973	228	0.294	455.614	436.699	0.958	561.43	577.61	808.9	1240.7	311.967965	320.7081525	290.5694826	333.6184037	PW2020T2	1.542857143	2.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.293	228	0	0	NA	2qD	chr2-4513773-181815659	2	1	1	0.597	2	NON-ABERRANT	1	0.981574539	sgMsh2	colon
chr2	36569422	36569422	G	A	ENSMUST00000215879.1	5	ENSMUSG00000096822	missense	A/T	275	Olfr344	ENSMUST00000215879.1:c.823G>A	ENSMUSP00000151202.1:p.Ala275Thr	H-2-Kb	9	9	3	IVTVMYTVV	IVAVMYTVV	SMM	359.013	246.666	0.687	299	0.271	456.245	317.816	0.697	510.51	715.61	357.5	543.3	246.6664026	359.0128555	278.131386	369.1900603	PW2020T2	1.685714286	1.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.274	299	0	0	NA	2qB	chr2-4513773-181815659	2	1	1	0.597	2	NON-ABERRANT	1	0.917922948	sgMsh2	colon
chr9	61409939	61409939	C	T	ENSMUST00000160882.7	1	ENSMUSG00000032280	missense	S/L	365	Tle3	ENSMUST00000160882.7:c.1094C>T	ENSMUSP00000124131.1:p.Ser365Leu	H-2-Db	9	9	3	MALALRTPI	MASALRTPI	NetMHC	31.9	1449.01	45.424	32	0.25	42.643	541.827	12.706	1449.01	31.9	784	59.8	299.6539453	45.14607513	259.1612106	40.139319	PW2020T2	1.014285714	1.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.272	32	0	0	NA	9qB	chr9-3342997-124108155	2	1	1	0.597	2	NON-ABERRANT	1	0.911222781	sgMsh2	colon
chrX	95642354	95642354	T	C	ENSMUST00000120620.7	1	ENSMUSG00000035062	missense	T/A	135	Zc4h2	ENSMUST00000120620.7:c.403A>G	ENSMUSP00000112449.1:p.Thr135Ala	H-2-Db	9	6	6	LSLEMAHPM	LSLEMTHPM	NetMHCpan	146.5	157.9	1.078	30	0.233	157.559	174.74	1.109	191.58	158.94	157.9	146.5	153.6809371	156.1780514	194.3434911	186.8830873	PW2020T2	0.157142857	0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.241	30	0	0	NA	XqC3	NA	NA	NA	NA	0.597	2	NON-ABERRANT	NA	NA	sgMsh2	colon
chrX	124128556	124128556	G	A	ENSMUST00000094491.4	5	ENSMUSG00000072049	missense	A/V	589	Vmn2r121	ENSMUST00000094491.4:c.1766C>T	ENSMUSP00000092067.3:p.Ala589Val	H-2-Kb	8	10	2	MVLSFSAI	MALSFSAI	NetMHCpan	30.9	31.8	1.029	349	0.02	70.095	67.034	0.956	28.69	38.86	31.8	30.9	102.2680559	103.9297781	109.5821962	101.3304567	PW2020T2	2.214285714	2.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.024	349	0	0	NA	XqE3	NA	NA	NA	NA	0.597	2	NON-ABERRANT	NA	NA	sgMsh2	colon
chr8	123421140	123421140	G	A	ENSMUST00000071134.3	1	ENSMUSG00000062380	missense	A/T	271	Tubb3	ENSMUST00000071134.3:c.811G>A	ENSMUSP00000071134.3:p.Ala271Thr	H-2-Kb	8	6	6	FMPGFTPL	FMPGFAPL	NetMHC	41.66	11.52	0.277	180	0.189	133.432	52.437	0.393	11.52	41.66	74.4	123.4	50.2041941	143.4630303	54.66885777	159.4924025	PW2020T2	0.6	0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.207	180	0	0	NA	8qE1	chr8-3167654-127409529	2	1	1	0.597	2	NON-ABERRANT	1	0.693467337	sgMsh2	colon
chr9	38524048	38524048	GT	G	ENSMUST00000216496.1	5	ENSMUSG00000062621	FS	C/X	105	Olfr911-ps1	ENSMUST00000216496.1:c.321del	ENSMUSP00000150446.1:p.Phe107LeufsTer9	H-2-Kb	8	6	8	QLYFFCFL	QLYFFCFF	SMM	34.494	560.712	16.255	371	0.315	54.717	600.357	10.972	1082.4	86.51	599.9	61.6	560.7121928	34.49371732	600.8139392	47.83436356	PW2020T2	2.457142857	2.457142857	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.316	371	0	0	NA	9qA5.1	chr9-3342997-124108155	2	1	1	0.597	2	NON-ABERRANT	1	1	sgMsh2	colon
chr7	105741636	105741636	GC	G	ENSMUST00000033182.9	1	ENSMUSG00000030890	FS	A/X	262	Ilk	ENSMUST00000033182.9:c.790del	ENSMUSP00000033182.3:p.His264ThrfsTer32	H-2-Kb	8	28	0	MFYMKAPI	NA	NetMHC	123.46	NA	NA	98	0.092	223.842	NA	NA	NA	123.46	NA	270.7	NA	248.7367755	NA	198.9481935	PW2020T2	0.6	0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.094	98	0	0	NA	7qE3	chr7-4010477-143062472	2	1	1	0.597	2	NON-ABERRANT	1	0.314907873	sgMsh2	colon
chr9	38815805	38815805	C	A	ENSMUST00000213164.1	5	ENSMUSG00000043911	missense	L/I	101	Olfr922	ENSMUST00000213164.1:c.301C>A	ENSMUSP00000149057.1:p.Leu101Ile	H-2-Kb	8	10	2	QIYFYCFF	QLYFYCFF	SMM	166.625	688.24	4.13	267	0.311	208.665	712.851	3.416	1232.47	211.33	488.8	206	688.2401428	166.6249377	737.4625996	215.6453014	PW2020T2	1.828571429	1.828571429	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.311	267	0	0	NA	9qA5.1	chr9-3342997-124108155	2	1	1	0.597	2	NON-ABERRANT	1	1	sgMsh2	colon
chr7	107148174	107148174	A	C	ENSMUST00000216871.2	5	ENSMUSG00000073896	missense	N/T	286	Olfr716	ENSMUST00000216871.2:c.857A>C	ENSMUSP00000150175.2:p.Asn286Thr	H-2-Kb	8	6	6	VTPMLTPI	VTPMLNPI	NetMHCpan	248.6	507.3	2.041	254	0.287	440.429	714.704	1.623	590.45	284.18	507.3	248.6	890.7175307	696.209588	838.9575756	596.6779652	PW2020T2	0.8	0.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.289	254	0	0	NA	7qE3	chr7-4010477-143062472	2	1	1	0.597	2	NON-ABERRANT	1	0.968174204	sgMsh2	colon
chr9	61409939	61409939	C	T	ENSMUST00000160882.7	1	ENSMUSG00000032280	missense	S/L	365	Tle3	ENSMUST00000160882.7:c.1094C>T	ENSMUSP00000124131.1:p.Ser365Leu	H-2-Kb	8	6	6	IGIMALAL	IGIMASAL	NetMHCpan	202.4	141.4	0.699	32	0.25	296.629	162.261	0.547	98.99	290.05	141.4	202.4	201.251905	326.3923717	183.1217795	303.2075422	PW2020T2	2.457142857	2.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.272	32	0	0	NA	9qB	chr9-3342997-124108155	2	1	1	0.597	2	NON-ABERRANT	1	0.911222781	sgMsh2	colon
chr9	38815805	38815805	C	A	ENSMUST00000213164.1	5	ENSMUSG00000043911	missense	L/I	101	Olfr922	ENSMUST00000213164.1:c.301C>A	ENSMUSP00000149057.1:p.Leu101Ile	H-2-Kb	8	11	1	IYFYCFFV	LYFYCFFV	SMMPMBEC	393.315	1677.799	4.266	267	0.311	439.319	1924.6	4.381	1549.25	420.77	2896.3	851.2	2171.400833	457.867692	1677.799266	393.3145385	PW2020T2	1.785714286	1.828571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.311	267	0	0	NA	9qA5.1	chr9-3342997-124108155	2	1	1	0.597	2	NON-ABERRANT	1	1	sgMsh2	colon
chr9	38524048	38524048	GT	G	ENSMUST00000216496.1	5	ENSMUSG00000062621	FS	C/X	105	Olfr911-ps1	ENSMUST00000216496.1:c.321del	ENSMUSP00000150446.1:p.Phe107LeufsTer9	H-2-Kb	8	8	6	YFFCFLPF	YFFCFFAI	SMMPMBEC	170.506	76.867	0.451	371	0.315	303.627	121.544	0.4	166.22	428.3	487.6	666.1	66.02980276	178.9534189	76.86701211	170.5061311	PW2020T2	2.271428571	2.271428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.316	371	0	0	NA	9qA5.1	chr9-3342997-124108155	2	1	1	0.597	2	NON-ABERRANT	1	1	sgMsh2	colon
chr8	47193976	47193976	G	A	ENSMUST00000079195.5	1	ENSMUSG00000038143	missense	L/F	150	Stox2	ENSMUST00000079195.5:c.448C>T	ENSMUSP00000078190.5:p.Leu150Phe	H-2-Kb	8	7	5	ITPSFIRT	ITPSLIRT	SMMPMBEC	264.692	2823.189	10.666	125	0.272	403.054	6064.6	15.047	8377.94	431.36	8177.9	865.6	3951.299959	374.7485835	2823.189304	264.691503	PW2020T2	-0.142857143	0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.278	125	0	0	NA	8qB1.1	chr8-3167654-127409529	2	1	1	0.597	2	NON-ABERRANT	1	0.931323283	sgMsh2	colon
chr9	38524048	38524048	GT	G	ENSMUST00000216496.1	5	ENSMUSG00000062621	FS	C/X	105	Olfr911-ps1	ENSMUST00000216496.1:c.321del	ENSMUSP00000150446.1:p.Phe107LeufsTer9	H-2-Kb	8	11	3	CFLPFVNV	NA	SMM	155.503	NA	NA	371	0.315	371.131	NA	NA	NA	457.33	NA	748.1	NA	155.5034397	NA	284.9311953	PW2020T2	1.814285714	1.814285714	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.316	371	0	0	NA	9qA5.1	chr9-3342997-124108155	2	1	1	0.597	2	NON-ABERRANT	1	1	sgMsh2	colon
chr9	38524048	38524048	GT	G	ENSMUST00000216496.1	5	ENSMUSG00000062621	FS	C/X	105	Olfr911-ps1	ENSMUST00000216496.1:c.321del	ENSMUSP00000150446.1:p.Phe107LeufsTer9	H-2-Kb	9	5	9	TQLYFFCFL	TQLYFFCFF	NetMHCpan	42.2	412.6	9.777	371	0.315	119.532	347.361	2.906	332.27	47.59	412.6	42.2	322.9311952	191.4740838	362.4515823	209.5318271	PW2020T2	2.457142857	2.457142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.316	371	0	0	NA	9qA5.1	chr9-3342997-124108155	2	1	1	0.597	2	NON-ABERRANT	1	1	sgMsh2	colon
chr7	105741636	105741636	GC	G	ENSMUST00000033182.9	1	ENSMUSG00000030890	FS	A/X	262	Ilk	ENSMUST00000033182.9:c.790del	ENSMUSP00000033182.3:p.His264ThrfsTer32	H-2-Kb	9	27	0	TMFYMKAPI	NA	NetMHC	67.26	NA	NA	98	0.092	76.466	NA	NA	NA	67.26	NA	67.6	NA	85.33162183	NA	90.0015523	PW2020T2	0.6	0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.094	98	0	0	NA	7qE3	chr7-4010477-143062472	2	1	1	0.597	2	NON-ABERRANT	1	0.314907873	sgMsh2	colon
chr7	105741636	105741636	GC	G	ENSMUST00000033182.9	1	ENSMUSG00000030890	FS	A/X	262	Ilk	ENSMUST00000033182.9:c.790del	ENSMUSP00000033182.3:p.His264ThrfsTer32	H-2-Kb	9	35	0	ISLWTRAKL	NA	NetMHC	68.01	NA	NA	98	0.092	217.961	NA	NA	NA	68.01	NA	104.6	NA	388.2486909	NA	331.3217908	PW2020T2	-0.085714286	0.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.094	98	0	0	NA	7qE3	chr7-4010477-143062472	2	1	1	0.597	2	NON-ABERRANT	1	0.314907873	sgMsh2	colon
chrX	94079149	94079149	AT	A	ENSMUST00000088102.11	1	ENSMUSG00000079509	FS	M/X	683	Zfx	ENSMUST00000088102.11:c.2047del	ENSMUSP00000085423.5:p.Met683CysfsTer17	H-2-Kb	9	17	0	VTLRLQIRL	NA	NetMHCpan	123.8	NA	NA	268	0.045	244.697	NA	NA	NA	125.27	NA	123.8	NA	373.3447082	NA	364.1245828	PW2020T2	0.485714286	1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.053	268	0	0	NA	XqC3	NA	NA	NA	NA	0.597	2	NON-ABERRANT	NA	NA	sgMsh2	colon
chr7	86268806	86268806	GT	G	ENSMUST00000217724.1	5	ENSMUSG00000057540	FS	T/X	328	Olfr310	ENSMUST00000217724.1:c.982del	ENSMUSP00000151989.1:p.Thr328LeufsTer4	H-2-Kb	9	3	9	SWYFRGKKL	SWYFRGKKT	SMM	102.591	593.076	5.781	65	0.123	135.449	1216.323	8.98	1839.57	161.44	6325	418.7	593.0755223	102.5911741	549.8573061	109.4586279	PW2020T2	-1.057142857	-1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.128	65	0	0	NA	7qD3	chr7-4010477-143062472	2	1	1	0.597	2	NON-ABERRANT	1	0.42881072	sgMsh2	colon
chr9	38815805	38815805	C	A	ENSMUST00000213164.1	5	ENSMUSG00000043911	missense	L/I	101	Olfr922	ENSMUST00000213164.1:c.301C>A	ENSMUSP00000149057.1:p.Leu101Ile	H-2-Kb	9	10	2	QIYFYCFFV	QLYFYCFFV	SMM	165.238	563.78	3.412	267	0.311	221.298	789.172	3.566	951.37	225.7	2304	911.3	563.7804345	165.2380267	626.9746764	216.8952295	PW2020T2	1.785714286	1.828571429	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.311	267	0	0	NA	9qA5.1	chr9-3342997-124108155	2	1	1	0.597	2	NON-ABERRANT	1	1	sgMsh2	colon
chr6	138043412	138043412	A	G	ENSMUST00000171804.3	5	ENSMUSG00000044378	missense	F/L	308	Slc15a5	ENSMUST00000171804.3:c.922T>C	ENSMUSP00000129239.1:p.Phe308Leu	H-2-Kb	9	3	9	SALLPLFSL	SALLPLFSF	NetMHC	239.82	409.24	1.706	162	0.457	430.551	833.559	1.936	409.24	239.82	2237.8	499.6	609.691303	361.5014137	1057.426037	611.2938126	PW2020T2	2.228571429	2.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.436	162	0	0	NA	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.730318258	sgMsh2	colon
chr9	38815805	38815805	C	A	ENSMUST00000213164.1	5	ENSMUSG00000043911	missense	L/I	101	Olfr922	ENSMUST00000213164.1:c.301C>A	ENSMUSP00000149057.1:p.Leu101Ile	H-2-Kb	9	9	3	TQIYFYCFF	TQLYFYCFF	SMM	228.618	229.673	1.005	267	0.311	246.717	256.338	1.039	256.67	245.55	290.7	252.5	229.67303	228.6177783	256.0059151	247.8848587	PW2020T2	1.828571429	1.828571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.311	267	0	0	NA	9qA5.1	chr9-3342997-124108155	2	1	1	0.597	2	NON-ABERRANT	1	1	sgMsh2	colon
chrX	124128556	124128556	G	A	ENSMUST00000094491.4	5	ENSMUSG00000072049	missense	A/V	589	Vmn2r121	ENSMUST00000094491.4:c.1766C>T	ENSMUSP00000092067.3:p.Ala589Val	H-2-Kb	9	9	3	CMVLSFSAI	CMALSFSAI	NetMHC	370.3	532.82	1.439	349	0.02	448.284	644.21	1.437	532.82	370.3	755.6	495.6	445.7691405	400.9682638	826.5135921	641.5787927	PW2020T2	2.214285714	2.214285714	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.024	349	0	0	NA	XqE3	NA	NA	NA	NA	0.597	2	NON-ABERRANT	NA	NA	sgMsh2	colon
chr9	38524048	38524048	GT	G	ENSMUST00000216496.1	5	ENSMUSG00000062621	FS	C/X	105	Olfr911-ps1	ENSMUST00000216496.1:c.321del	ENSMUSP00000150446.1:p.Phe107LeufsTer9	H-2-Kb	9	7	7	LYFFCFLPF	LYFFCFFAI	SMMPMBEC	112.008	248.456	2.218	371	0.315	272.081	422.41	1.553	557.67	414.71	1217.8	1022	287.1507798	129.4523683	248.4562923	112.0082469	PW2020T2	2.271428571	2.457142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.316	371	0	0	NA	9qA5.1	chr9-3342997-124108155	2	1	1	0.597	2	NON-ABERRANT	1	1	sgMsh2	colon
chr9	38524048	38524048	GT	G	ENSMUST00000216496.1	5	ENSMUSG00000062621	FS	C/X	105	Olfr911-ps1	ENSMUST00000216496.1:c.321del	ENSMUSP00000150446.1:p.Phe107LeufsTer9	H-2-Kb	9	8	6	YFFCFLPFV	YFFCFFAIC	SMM	263.7	375.933	1.426	371	0.315	391.455	646.296	1.651	916.66	443.87	2964.1	849.6	375.9326101	263.6999212	323.0353127	339.0392667	PW2020T2	2.471428571	2.471428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.316	371	0	0	NA	9qA5.1	chr9-3342997-124108155	2	1	1	0.597	2	NON-ABERRANT	1	1	sgMsh2	colon
chr6	21217215	21217215	A	T	ENSMUST00000081542.5	1	ENSMUSG00000060882	missense	H/L	306	Kcnd2	ENSMUST00000081542.5:c.917A>T	ENSMUSP00000080257.5:p.His306Leu	H-2-Kb	8	4	8	RIFKFSRL	RIFKFSRH	NetMHC	2.92	2734.83	936.586	146	0.082	4.627	1647.126	356.017	2734.83	2.92	3906.2	4.6	559.4225905	4.653074435	203.114066	4.696128803	PW2613T1	0.671428571	0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.092	146	0	0	NA	6qA2	chr6-3494310-146565716	2	1	1	0.619	2	NON-ABERRANT	1	0.297253635	sgCtl	colon
chr1	174042488	174042488	C	A	ENSMUST00000214690.1	5	ENSMUSG00000045381	missense	D/E	179	Olfr433	ENSMUST00000214690.1:c.537C>A	ENSMUSP00000149005.1:p.Asp179Glu	H-2-Kb	8	5	7	IAHYFCEL	IAHYFCDL	NetMHCpan	13.9	29.9	2.151	135	0.037	48.396	60.96	1.26	31.61	20.98	29.9	13.9	99.71029474	81.98605697	90.31086459	75.81235717	PW2613T1	0.414285714	0.514285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.039	135	0	0	NA	1qH3	chr1-9545447-193175881	2	2	0	0.619	2	NON-ABERRANT	1	0.126009693	sgCtl	colon
chr12	76577954	76577954	C	T	ENSMUST00000075249.5	1	ENSMUSG00000052609	missense	P/L	1191	Plekhg3	ENSMUST00000075249.5:c.3572C>T	ENSMUSP00000074729.4:p.Pro1191Leu	H-2-Kb	8	8	4	SSWLRSLL	SSWPRSLL	NetMHCpan	41.1	75.3	1.832	77	0.052	110.321	304.697	2.762	249.86	64.06	75.3	41.1	370.458872	194.4195797	359.5340277	156.5813381	PW2613T1	0.628571429	0.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.074	77	0	0	NA	12qC3	chr12-4957277-118301289	2	1	1	0.619	2	NON-ABERRANT	1	0.239095315	sgCtl	colon
chr11	119343910	119343910	C	A	ENSMUST00000106250.7	5	ENSMUSG00000013483	missense	L/M	899	Card14	ENSMUST00000106250.7:c.2695C>A	ENSMUSP00000101857.1:p.Leu899Met	H-2-Kb	9	3	9	MNMSTHALM	MNMSTHALL	NetMHC	90.98	40.6	0.446	46	0.087	211.445	138.163	0.653	40.6	90.98	58.5	136.4	217.8261422	286.4903513	351.7628732	476.7053215	PW2613T1	0.671428571	0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.089	46	0	0	NA	11qE2	chr11-3133205-120861039	2	1	1	0.619	2	NON-ABERRANT	1	0.287560582	sgCtl	colon
chr12	76577954	76577954	C	T	ENSMUST00000075249.5	1	ENSMUSG00000052609	missense	P/L	1191	Plekhg3	ENSMUST00000075249.5:c.3572C>T	ENSMUSP00000074729.4:p.Pro1191Leu	H-2-Kb	9	8	4	SSWLRSLLV	SSWPRSLLV	NetMHC	121.1	239.54	1.978	77	0.052	175.712	257.516	1.466	239.54	121.1	207.8	187.7	275.4926395	163.7231154	349.3413547	212.9364454	PW2613T1	1.342857143	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.074	77	0	0	NA	12qC3	chr12-4957277-118301289	2	1	1	0.619	2	NON-ABERRANT	1	0.239095315	sgCtl	colon
chr6	21217215	21217215	A	T	ENSMUST00000081542.5	1	ENSMUSG00000060882	missense	H/L	306	Kcnd2	ENSMUST00000081542.5:c.917A>T	ENSMUSP00000080257.5:p.His306Leu	H-2-Kb	9	3	9	FRIFKFSRL	FRIFKFSRH	NetMHC	151.79	10194.86	67.164	146	0.082	247.876	6607.788	26.658	10194.86	151.79	25567.3	725.3	3020.716724	251.8314697	2484.562923	243.9214539	PW2613T1	0.671428571	0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.092	146	0	0	NA	6qA2	chr6-3494310-146565716	2	1	1	0.619	2	NON-ABERRANT	1	0.297253635	sgCtl	colon
chr1	174042488	174042488	C	A	ENSMUST00000214690.1	5	ENSMUSG00000045381	missense	D/E	179	Olfr433	ENSMUST00000214690.1:c.537C>A	ENSMUSP00000149005.1:p.Asp179Glu	H-2-Kb	9	7	5	HYFCELAPL	HYFCDLAPL	SMM	378.538	656.311	1.734	135	0.037	479.061	867.806	1.811	1515.1	683.56	1079.3	497.6	656.3114787	378.5384504	607.0856956	460.5215948	PW2613T1	1.371428571	1.371428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.039	135	0	0	NA	1qH3	chr1-9545447-193175881	2	2	0	0.619	2	NON-ABERRANT	1	0.126009693	sgCtl	colon
chr13	27855240	27855240	C	T	ENSMUST00000054932.12	5	ENSMUSG00000062551	missense	P/S	77	Prl2c1	ENSMUST00000054932.12:c.229C>T	ENSMUSP00000053446.5:p.Pro77Ser	H-2-Kb	9	5	7	KHYSKVSGL	KHYSKVPGL	NetMHC	212.41	286.96	1.351	242	0.029	227.579	264.562	1.163	286.96	212.41	230.9	241.8	242.1642333	213.3585248	331.3217908	298.0231495	PW2613T2	0.114285714	0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.032	242	0	0	NA	13qA3.1	chr13-3932610-119495179	2	1	1	0.369	2	NON-ABERRANT;POOR GOF (78.7%)	1	0.173441734	sgCtl	colon
chr2	104471431	104471431	C	T	ENSMUST00000028600.13	1	ENSMUSG00000027177	missense	G/S	139	Hipk3	ENSMUST00000028600.13:c.415G>A	ENSMUSP00000028600.7:p.Gly139Ser	H-2-Db	9	11	1	SAMQIVDEL	GAMQIVDEL	NetMHCpan	47.8	288.1	6.027	118	0.508	386.209	1316.994	3.41	1251.79	245.65	288.1	47.8	1568.989366	526.7687464	1382.197172	599.1975101	PW2716T1	0.557142857	0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.514	118	0	0	NA	2qE2	chr2-4925576-181511691	2	1	1	0.745	2	NON-ABERRANT;POOR GOF (73.8%)	1	1	sgCtl	colon
chr14	122941931	122941931	A	C	ENSMUST00000037726.13	1	ENSMUSG00000041594	missense	L/V	401	Tmtc4	ENSMUST00000037726.13:c.1201T>G	ENSMUSP00000046368.7:p.Leu401Val	H-2-Kb	8	8	4	ASNVFFRV	ASNLFFRV	SMMPMBEC	64.378	60.637	0.942	117	0.043	75.421	73.941	0.98	84.97	80.9	115.7	129.1	62.91294278	69.94231455	60.63732022	64.37837347	PW2716T1	0.742857143	0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.059	117	0	0	NA	14qE5	NA	NA	NA	NA	0.745	2	NON-ABERRANT;POOR GOF (73.8%)	NA	NA	sgCtl	colon
chr18	50090518	50090518	A	C	ENSMUST00000148159.2	1	ENSMUSG00000062210	missense	H/P	131	Tnfaip8	ENSMUST00000148159.2:c.392A>C	ENSMUSP00000119041.2:p.His131Pro	H-2-Kb	8	6	6	TVVSFPQV	TVVSFHQV	NetMHC	158.08	268.63	1.699	105	0.305	223.638	263.054	1.176	268.63	158.08	167.6	166.9	326.3923717	347.3281635	257.4779247	280.3754606	PW2716T1	1.357142857	1.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.31	105	0	0	NA	18qD1	chr18-6333071-80029339	2	1	1	0.745	2	NON-ABERRANT;POOR GOF (73.8%)	1	0.832214765	sgCtl	colon
chr4	115247649	115247649	T	G	ENSMUST00000118278.1	5	ENSMUSG00000083138	missense	L/R	118	Cyp4a29	ENSMUST00000118278.1:c.353T>G	ENSMUSP00000139717.1:p.Leu118Arg	H-2-Kb	8	8	4	KASRYRFL	KASLYRFL	NetMHC	222.62	315.26	1.416	320	0.05	244.836	301.73	1.232	315.26	222.62	288.2	404.7	282.3189304	231.6007706	317.4972734	258.0714726	PW2716T1	-0.385714286	-0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.055	320	0	0	NA	4qD1	chr4-3973093-150431620	2	1	1	0.745	2	NON-ABERRANT;POOR GOF (73.8%)	1	0.147651007	sgCtl	colon
chr2	85868912	85868912	C	G	ENSMUST00000054736.3	NA	ENSMUSG00000057761	missense	L/V	107	Olfr1022	ENSMUST00000054736.3:c.319C>G	ENSMUSP00000059312.3:p.Leu107Val	H-2-Kb	8	11	1	VVITEFYL	LVITEFYL	NetMHCpan	95.8	548	5.72	584	0.034	219.288	1038.534	4.736	1915.62	253.76	548	95.8	1308.398387	258.6663888	768.6701211	184.8161845	PW2716T1	1.4	1.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.035	584	0	0	NA	2qD	chr2-4925576-181511691	2	1	1	0.745	2	NON-ABERRANT;POOR GOF (73.8%)	1	0.093959732	sgCtl	colon
chr14	122941931	122941931	A	C	ENSMUST00000037726.13	1	ENSMUSG00000041594	missense	L/V	401	Tmtc4	ENSMUST00000037726.13:c.1201T>G	ENSMUSP00000046368.7:p.Leu401Val	H-2-Kb	8	11	1	VFFRVGFV	LFFRVGFV	SMM	81.048	409.959	5.058	117	0.043	198.144	1025.395	5.175	1993.78	289.2	1605.4	373.9	409.9585987	81.04757034	445.3895263	107.0878008	PW2716T1	1.7	1.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.059	117	0	0	NA	14qE5	NA	NA	NA	NA	0.745	2	NON-ABERRANT;POOR GOF (73.8%)	NA	NA	sgCtl	colon
chr7	119530345	119530345	G	T	ENSMUST00000066465.2	1	ENSMUSG00000030972	missense	E/D	93	Acsm5	ENSMUST00000066465.2:c.279G>T	ENSMUSP00000063416.1:p.Glu93Asp	H-2-Kb	8	5	7	VKWTFEDL	VKWTFEEL	SMMPMBEC	183.122	153.723	0.839	70	0.057	388.506	233.315	0.601	298.85	572.96	402.5	1062.7	167.7799266	204.0515979	153.7234066	183.1217795	PW2716T1	-0.842857143	-0.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.071	70	0	0	NA	7qF2	chr7-4477867-142989150	2	1	1	0.745	2	NON-ABERRANT;POOR GOF (73.8%)	1	0.190604027	sgCtl	colon
chr2	85868912	85868912	C	G	ENSMUST00000054736.3	NA	ENSMUSG00000057761	missense	L/V	107	Olfr1022	ENSMUST00000054736.3:c.319C>G	ENSMUSP00000059312.3:p.Leu107Val	H-2-Kb	9	11	1	VVITEFYLL	LVITEFYLL	NetMHCpan	59	246.9	4.185	584	0.034	102.864	345.433	3.358	326.02	78.93	246.9	59	364.8463451	126.7972983	436.7671833	168.7524163	PW2716T1	1.342857143	1.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.035	584	0	0	NA	2qD	chr2-4925576-181511691	2	1	1	0.745	2	NON-ABERRANT;POOR GOF (73.8%)	1	0.093959732	sgCtl	colon
chr14	122941931	122941931	A	C	ENSMUST00000037726.13	1	ENSMUSG00000041594	missense	L/V	401	Tmtc4	ENSMUST00000037726.13:c.1201T>G	ENSMUSP00000046368.7:p.Leu401Val	H-2-Kb	9	9	3	SNVFFRVGF	SNLFFRVGF	NetMHCpan	97.2	68.8	0.708	117	0.043	204.018	141.558	0.694	91.2	128.71	68.8	97.2	191.9154771	279.3251239	226.5948317	318.6031021	PW2716T1	1.7	1.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.059	117	0	0	NA	14qE5	NA	NA	NA	NA	0.745	2	NON-ABERRANT;POOR GOF (73.8%)	NA	NA	sgCtl	colon
chr4	115247649	115247649	T	G	ENSMUST00000118278.1	5	ENSMUSG00000083138	missense	L/R	118	Cyp4a29	ENSMUST00000118278.1:c.353T>G	ENSMUSP00000139717.1:p.Leu118Arg	H-2-Kb	9	10	2	SRYRFLTPW	SLYRFLTPW	NetMHC	181.83	79.2	0.436	320	0.05	367.253	200.228	0.545	79.2	181.83	85.5	630	435.622196	395.4667729	314.9560825	339.0392667	PW2716T1	-0.342857143	-0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.055	320	0	0	NA	4qD1	chr4-3973093-150431620	2	1	1	0.745	2	NON-ABERRANT;POOR GOF (73.8%)	1	0.147651007	sgCtl	colon
chr7	85406905	85406905	T	G	ENSMUST00000171213.2	5	ENSMUSG00000091006	missense	K/T	675	Vmn2r69	ENSMUST00000171213.2:c.2024A>C	ENSMUSP00000132726.1:p.Lys675Thr	H-2-Kb	9	6	6	VVLAFTITV	VVLAFKITV	NetMHCpan	170	177.7	1.045	465	0.017	231.177	257.777	1.115	185.86	185.59	177.7	170	329.6932077	276.7642557	405.7420321	347.7362769	PW2716T1	2.242857143	2.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.019	465	0	0	NA	7qD3	chr7-4477867-142989150	2	1	1	0.745	2	NON-ABERRANT;POOR GOF (73.8%)	1	0.051006711	sgCtl	colon
chr4	115247649	115247649	T	G	ENSMUST00000118278.1	5	ENSMUSG00000083138	missense	L/R	118	Cyp4a29	ENSMUST00000118278.1:c.353T>G	ENSMUSP00000139717.1:p.Leu118Arg	H-2-Kb	10	10	2	SRYRFLTPWL	SLYRFLTPWL	NetMHC	101.57	43.37	0.427	320	0.05	381.513	615.745	1.614	43.37	101.57	37.1	127.9	1586.097936	883.7511664	1188.119161	635.1261584	PW2716T1	0.385714286	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.055	320	0	0	NA	4qD1	chr4-3973093-150431620	2	1	1	0.745	2	NON-ABERRANT;POOR GOF (73.8%)	1	0.147651007	sgCtl	colon
chr2	104471431	104471431	C	T	ENSMUST00000028600.13	1	ENSMUSG00000027177	missense	G/S	139	Hipk3	ENSMUST00000028600.13:c.415G>A	ENSMUSP00000028600.7:p.Gly139Ser	H-2-Db	9	11	1	SAMQIVDEL	GAMQIVDEL	NetMHCpan	47.8	288.1	6.027	156	0.429	386.209	1316.994	3.41	1251.79	245.65	288.1	47.8	1568.989366	526.7687464	1382.197172	599.1975101	PW2716T2	0.557142857	0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.448	156	0	0	NA	2qE2	chr2-4925576-181631782	2	1	1	0.751	2	NON-ABERRANT;POOR GOF (73%)	1	1	sgCtl	colon
chr4	126868747	126868747	G	A	ENSMUST00000106108.8	1	ENSMUSG00000042446	missense	P/S	1428	Zmym4	ENSMUST00000106108.8:c.4282C>T	ENSMUSP00000101714.2:p.Pro1428Ser	H-2-Kb	8	6	6	YLRFFSPL	YLRFFPPL	NetMHCpan	28.2	41.9	1.486	194	0.021	86.992	151.323	1.74	165.74	71.48	41.9	28.2	147.1431334	102.5038081	155.5034397	103.2143305	PW2716T2	0.9	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.028	194	0	0	NA	4qD2.2	chr4-3973093-156200568	2	1	1	0.751	2	NON-ABERRANT;POOR GOF (73%)	1	0.074567244	sgCtl	colon
chr2	88124790	88124790	A	C	ENSMUST00000217575.2	5	ENSMUSG00000101078	missense	L/R	65	Olfr1166	ENSMUST00000217575.2:c.194T>G	ENSMUSP00000149099.1:p.Leu65Arg	H-2-Kb	8	7	5	MYFFRSHL	MYFFLSHL	NetMHCpan	25.2	18.4	0.73	319	0.044	219.585	102.23	0.466	79.22	102.86	18.4	25.2	125.2391179	367.908651	128.7478543	336.3101696	PW2716T2	-0.057142857	-0.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.043	319	0	0	NA	2qD	chr2-4925576-181631782	2	1	1	0.751	2	NON-ABERRANT;POOR GOF (73%)	1	0.114513981	sgCtl	colon
chr4	126868747	126868747	G	A	ENSMUST00000106108.8	1	ENSMUSG00000042446	missense	P/S	1428	Zmym4	ENSMUST00000106108.8:c.4282C>T	ENSMUSP00000101714.2:p.Pro1428Ser	H-2-Kb	9	5	7	TYLRFFSPL	TYLRFFPPL	NetMHC	11.27	18.37	1.63	194	0.021	30.31	35.547	1.173	18.37	11.27	19.2	14.9	51.89314595	45.72039776	53.98212792	48.55679351	PW2716T2	0.9	0.9	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.028	194	0	0	NA	4qD2.2	chr4-3973093-156200568	2	1	1	0.751	2	NON-ABERRANT;POOR GOF (73%)	1	0.074567244	sgCtl	colon
chr2	88124790	88124790	A	C	ENSMUST00000217575.2	5	ENSMUSG00000101078	missense	L/R	65	Olfr1166	ENSMUST00000217575.2:c.194T>G	ENSMUSP00000149099.1:p.Leu65Arg	H-2-Kb	9	6	6	PMYFFRSHL	PMYFFLSHL	SMM	23.18	13.744	0.593	319	0.044	40.133	27.523	0.686	44.85	47.76	32.8	44.6	13.74390042	23.17981684	22.24590099	35.66563823	PW2716T2	-0.057142857	-0.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.043	319	0	0	NA	2qD	chr2-4925576-181631782	2	1	1	0.751	2	NON-ABERRANT;POOR GOF (73%)	1	0.114513981	sgCtl	colon
chr13	11785074	11785074	C	T	ENSMUST00000021750.14	1	ENSMUSG00000021313	missense	R/H	929	Ryr2	ENSMUST00000021750.14:c.2786G>A	ENSMUSP00000021750.7:p.Arg929His	H-2-Kb	9	11	1	HNYNLQMSL	RNYNLQMSL	NetMHC	142.21	47.95	0.337	168	0.06	254.617	193.405	0.76	47.95	142.21	53.3	146.9	333.5108752	362.3347605	367.4937861	434.7604204	PW2716T2	0.057142857	0.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.061	168	0	0	NA	13qA1	chr13-5864677-119495179	2	1	1	0.751	2	NON-ABERRANT;POOR GOF (73%)	1	0.162450067	sgCtl	colon
chr4	126868747	126868747	G	A	ENSMUST00000106108.8	1	ENSMUSG00000042446	missense	P/S	1428	Zmym4	ENSMUST00000106108.8:c.4282C>T	ENSMUSP00000101714.2:p.Pro1428Ser	H-2-Kb	9	4	8	MTYLRFFSP	MTYLRFFPP	SMM	91.645	52.615	0.574	194	0.021	419.996	251.33	0.598	858.05	1396.71	406	674.7	52.61505152	91.64525838	96.66071427	165.2913018	PW2716T2	0.171428571	0.685714286	FALSE	FALSE	TRUE	0	FALSE	0	Mutect2;Vardict	2	0.028	194	0	0	NA	4qD2.2	chr4-3973093-156200568	2	1	1	0.751	2	NON-ABERRANT;POOR GOF (73%)	1	0.074567244	sgCtl	colon
chr7	105086477	105086477	GT	G	ENSMUST00000214328.2	5	ENSMUSG00000096029	FS	F/X	254	Olfr679	ENSMUST00000214328.2:c.765del	ENSMUSP00000150668.1:p.Phe255LeufsTer13	H-2-Kb	8	12	1	LAPSFWFL	NA	NetMHCpan	83.5	NA	NA	403	0.022	208.443	NA	NA	NA	461.72	NA	83.5	NA	196.218522	NA	220.6683258	PW3319T1	1.128571429	1.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.026	403	0	0	NA	7qE3	chr7-3908604-141858900	2	1	1	0.68	2	NON-ABERRANT	1	0.076470588	sgMsh3	colon
chr7	105086477	105086477	GT	G	ENSMUST00000214328.2	5	ENSMUSG00000096029	FS	F/X	254	Olfr679	ENSMUST00000214328.2:c.765del	ENSMUSP00000150668.1:p.Phe255LeufsTer13	H-2-Kb	9	15	0	SFWFLSSHM	NA	NetMHC	262.7	NA	NA	403	0.022	338.335	NA	NA	NA	262.7	NA	313.5	NA	363.1700284	NA	490.0608399	PW3319T1	0.4	0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.026	403	0	0	NA	7qE3	chr7-3908604-141858900	2	1	1	0.68	2	NON-ABERRANT	1	0.076470588	sgMsh3	colon
chr11	97752668	97752668	TG	T	ENSMUST00000018685.8	1	ENSMUSG00000018541	FS	P/X	262	Cwc25	ENSMUST00000018685.8:c.786del	ENSMUSP00000018685.2:p.Arg263GlyfsTer38	H-2-Db	9	39	0	QGPANRIPL	NA	NetMHC	50.72	NA	NA	55	0.255	215.561	NA	NA	NA	50.72	NA	127.3	NA	303.8225469	NA	361.0522036	PW3321T1	-0.157142857	-0.157142857	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.264	55	0	0	NA	11qD	chr11-3133205-121426601	2	1	1	0.52	2	NON-ABERRANT	1	1	sgMlh1	colon
chr10	130017964	130017964	C	T	ENSMUST00000214917.1	5	ENSMUSG00000048745	missense	A/V	201	Olfr820	ENSMUST00000214917.1:c.602C>T	ENSMUSP00000150464.1:p.Ala201Val	H-2-Db	9	11	1	VAVTLILTL	AAVTLILTL	SMM	340.895	265.84	0.78	142	0.035	452.312	325.626	0.72	383.6	555.83	853.8	1568.7	265.8397991	340.8945044	267.6516962	348.7947987	PW3321T1	2.671428571	3.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.044	142	0	0	NA	10qD3	NA	NA	NA	NA	0.52	2	NON-ABERRANT	NA	NA	sgMlh1	colon
chr17	28974308	28974308	CA	C	ENSMUST00000119274.2	1	ENSMUSG00000024006	FS	F/X	382	Stk38	ENSMUST00000119274.2:c.1146del	ENSMUSP00000113657.1:p.Phe382LeufsTer42	H-2-Kb	8	38	0	TSMNFQSL	NA	NetMHC	7.12	NA	NA	77	0.117	20.588	NA	NA	NA	7.12	NA	9.5	NA	35.46010359	NA	31.67670499	PW3321T1	-0.014285714	-0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1169	77	0	0	NA	17qA3.3	chr17-3545491-89046578	2	2	0	0.52	2	NON-ABERRANT	1	0.449615385	sgMlh1	colon
chr17	87717505	87717505	G	A	ENSMUST00000024967.13	1	ENSMUSG00000024151	missense	A/T	604	Msh2	ENSMUST00000024967.13:c.1810G>A	ENSMUSP00000024967.7:p.Ala604Thr	H-2-Kb	8	11	1	TIVSFAHV	AIVSFAHV	NetMHC	9.33	10.51	1.126	162	0.086	43.513	51.565	1.185	10.51	9.33	47.7	43.5	64.52678095	51.13755976	55.42937734	43.52512229	PW3321T1	1.928571429	1.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.086	162	0	0	NA	17qE4	chr17-3545491-89046578	2	2	0	0.52	2	NON-ABERRANT	1	0.330769231	sgMlh1	colon
chr12	84162393	84162393	AG	A	ENSMUST00000110294.1	5	ENSMUSG00000042507	FS	P/X	645	Elmsan1	ENSMUST00000110294.1:c.1934del	ENSMUSP00000105923.1:p.Pro645LeufsTer58	H-2-Kb	8	57	0	IALKSPRL	NA	NetMHC	156.56	NA	NA	37	0.162	204.907	NA	NA	NA	156.56	NA	203.4	NA	206.414404	NA	241.9580078	PW3321T1	-0.2	-0.1	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1622	37	0	0	NA	12qD1	chr12-3252726-117875779	2	1	1	0.52	2	NON-ABERRANT	1	0.623846154	sgMlh1	colon
chr12	84162393	84162393	AG	A	ENSMUST00000110294.1	5	ENSMUSG00000042507	FS	P/X	645	Elmsan1	ENSMUST00000110294.1:c.1934del	ENSMUSP00000105923.1:p.Pro645LeufsTer58	H-2-Kb	8	60	0	KSPRLSSL	NA	NetMHC	187.45	NA	NA	37	0.162	295.716	NA	NA	NA	187.45	NA	313.8	NA	279.7306149	NA	311.7022951	PW3321T1	-0.128571429	-0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1622	37	0	0	NA	12qD1	chr12-3252726-117875779	2	1	1	0.52	2	NON-ABERRANT	1	0.623846154	sgMlh1	colon
chr1	92588893	92588893	GC	G	ENSMUST00000190505.2	3	ENSMUSG00000046300	FS	P/X	188	Olfr1412	ENSMUST00000190505.2:c.566del	ENSMUSP00000150943.1:p.Pro189ArgfsTer16	H-2-Kb	8	9	4	DVPRYSRL	NA	NetMHC	199.98	NA	NA	158	0.044	213.45	NA	NA	NA	199.98	NA	1347.1	NA	202.6469166	NA	224.2538976	PW3321T1	-0.671428571	-0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.047	158	0	0	NA	1qD	chr1-4867294-193352278	2	2	0	0.52	2	NON-ABERRANT	1	0.180769231	sgMlh1	colon
chr19	13095417	13095417	G	A	ENSMUST00000215229.1	5	ENSMUSG00000061637	missense	A/V	77	Olfr1457	ENSMUST00000215229.1:c.230C>T	ENSMUSP00000150957.1:p.Ala77Val	H-2-Kb	8	4	8	VDFCYSSV	VDFCYSSA	SMM	67.412	402.476	5.97	185	0.049	103.969	917.738	8.827	2725.08	230.52	1433	132.3	402.476011	67.41243274	363.6972355	75.63799359	PW3321T1	0.442857143	0.442857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.05	185	0	0	NA	19qA	chr19-3279478-61225035	2	1	1	0.52	2	NON-ABERRANT	1	0.192307692	sgMlh1	colon
chr10	130017964	130017964	C	T	ENSMUST00000214917.1	5	ENSMUSG00000048745	missense	A/V	201	Olfr820	ENSMUST00000214917.1:c.602C>T	ENSMUSP00000150464.1:p.Ala201Val	H-2-Kb	8	6	6	IQFLLVAV	IQFLLAAV	SMM	135.438	46.853	0.346	142	0.035	189.786	47.234	0.249	31.6	242.25	73.1	256.9	46.85328006	135.4378341	47.61458462	137.3219621	PW3321T1	2.442857143	2.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.044	142	0	0	NA	10qD3	NA	NA	NA	NA	0.52	2	NON-ABERRANT	NA	NA	sgMlh1	colon
chr6	130016678	130016678	CT	C	ENSMUST00000074056.2	1	ENSMUSG00000061769	FS	K/X	210	Klra6	ENSMUST00000074056.2:c.629del	ENSMUSP00000073700.2:p.Lys210ArgfsTer15	H-2-Kb	8	14	0	HGLTMANL	NA	SMMPMBEC	184.391	NA	NA	305	0.062	238.554	NA	NA	NA	251.3	NA	469.4	NA	225.8083514	NA	184.391119	PW3321T1	0.957142857	0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0623	305	0	0	NA	6qF3	chr6-4758661-144023076	2	1	1	0.52	2	NON-ABERRANT	1	0.239615385	sgMlh1	colon
chr7	85409675	85409675	GA	G	ENSMUST00000233859.1	NA	ENSMUSG00000091006	FS	F/X	559	Vmn2r69	ENSMUST00000233859.1:c.1677del	ENSMUSP00000156696.1:p.Leu560SerfsTer20	H-2-Kb	8	11	2	FSQIYIVL	NA	SMM	100.171	NA	NA	134	0.075	170.419	NA	NA	NA	293.21	NA	210.3	NA	100.1705365	NA	130.5389154	PW3321T1	1.628571429	1.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.072	134	0	0	NA	7qD3	chr7-4477867-142893198	2	1	1	0.52	2	NON-ABERRANT	1	0.276923077	sgMlh1	colon
chr6	123741591	123741591	G	A	ENSMUST00000172391.3	5	ENSMUSG00000091620	missense	M/I	634	Vmn2r23	ENSMUST00000172391.3:c.1902G>A	ENSMUSP00000126682.2:p.Met634Ile	H-2-Kb	8	11	1	ILCFFCSL	MLCFFCSL	SMMPMBEC	59.668	129.64	2.173	392	0.023	79.958	203.011	2.539	769.73	313.09	258.2	86	147.8223152	73.91626265	129.6402918	59.66779652	PW3321T1	2.485714286	2.585714286	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;Vardict	3	0.023	392	0	0	NA	6qF2	chr6-4758661-144023076	2	1	1	0.52	2	NON-ABERRANT	1	0.088461538	sgMlh1	colon
chr7	6480610	6480610	GA	G	ENSMUST00000209866.3	5	ENSMUSG00000096228	FS	F/X	182	Olfr5	ENSMUST00000209866.3:c.545del	ENSMUSP00000147586.2:p.Phe182SerfsTer21	H-2-Kb	8	12	0	VMFPHYST	NA	NetMHCpan	146.4	NA	NA	322	0.05	453.302	NA	NA	NA	324.85	NA	146.4	NA	589.847849	NA	581.7548331	PW3321T1	-0.414285714	0.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.057	322	0	0	NA	7qA1	chr7-4477867-142893198	2	1	1	0.52	2	NON-ABERRANT	1	0.219230769	sgMlh1	colon
chr15	89419315	89419315	G	A	ENSMUST00000109313.8	1	ENSMUSG00000078937	missense	A/V	539	Cpt1b	ENSMUST00000109313.8:c.1616C>T	ENSMUSP00000104936.2:p.Ala539Val	H-2-Kb	8	4	8	NSYQVAKV	NSYQVAKA	SMM	254.531	1519.637	5.97	48	0.312	409.465	3109.569	7.594	7584.47	564.4	4699.5	831	1519.637493	254.5305993	1223.883275	254.5305993	PW3321T1	0.1	0.1	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.289	48	0	0	NA	15qE3	chr15-3280572-103103068	2	1	1	0.52	2	NON-ABERRANT	1	1	sgMlh1	colon
chr3	142794113	142794113	G	A	ENSMUST00000043812.14	1	ENSMUSG00000004591	missense	P/L	913	Pkn2	ENSMUST00000043812.14:c.2738C>T	ENSMUSP00000039566.8:p.Pro913Leu	H-2-Kb	8	8	4	KKHLFFRL	KKHPFFRL	SMMPMBEC	135.438	310.985	2.296	90	0.078	362.462	787.363	2.172	1263.74	601.48	1278.2	574.7	286.246378	150.2242346	310.9853997	135.4378341	PW3321T1	0.228571429	0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.074	90	0	0	NA	3qH1	chr3-8666483-159911278	2	1	1	0.52	2	NON-ABERRANT	1	0.284615385	sgMlh1	colon
chr7	141793176	141793176	CG	C	ENSMUST00000041924.13	5	ENSMUSG00000037974	FS	R/X	328	Muc5ac	ENSMUST00000041924.13:c.986del	ENSMUSP00000039699.7:p.Gly329AlafsTer106	H-2-Kb	8	69	0	AVFLCPSV	NA	NetMHCpan	328	NA	NA	102	0.049	489.517	NA	NA	NA	655.29	NA	328	NA	536.7103866	NA	442.3234863	PW3321T1	2.157142857	2.157142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.061	102	0	0	NA	7qF5	chr7-4477867-142893198	2	1	1	0.52	2	NON-ABERRANT	1	0.234615385	sgMlh1	colon
chr15	101194842	101194842	TG	T	ENSMUST00000000544.11	1	ENSMUSG00000000532	FS	W/X	122	Acvr1b	ENSMUST00000000544.11:c.368del	ENSMUSP00000000544.9:p.Gly123AlafsTer111	H-2-Kb	8	80	0	LAQGYPFL	NA	NetMHCpan	402.5	NA	NA	83	0.06	463.782	NA	NA	NA	820.31	NA	402.5	NA	424.3654321	NA	503.1992672	PW3321T1	0.228571429	0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.073	83	0	0	NA	15qF1	chr15-3280572-103103068	2	1	1	0.52	2	NON-ABERRANT	1	0.280769231	sgMlh1	colon
chr4	116510700	116510700	TG	T	ENSMUST00000106479.7	1	ENSMUSG00000028696	FS	V/X	43	Ipp	ENSMUST00000106479.7:c.132del	ENSMUSP00000102088.1:p.Lys45ArgfsTer26	H-2-Kb	8	28	0	RTLQLCSL	NA	SMM	310.27	NA	NA	97	0.134	445.444	NA	NA	NA	896.07	NA	549.9	NA	310.2701531	NA	340.9887101	PW3321T1	1.271428571	1.271428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.147	97	0	0	NA	4qD1	chr4-5799947-156200568	2	1	1	0.52	2	NON-ABERRANT	1	0.565384615	sgMlh1	colon
chr17	28974308	28974308	CA	C	ENSMUST00000119274.2	1	ENSMUSG00000024006	FS	F/X	382	Stk38	ENSMUST00000119274.2:c.1146del	ENSMUSP00000113657.1:p.Phe382LeufsTer42	H-2-Kb	9	38	0	TSMNFQSLI	NA	NetMHC	41.44	NA	NA	77	0.117	157.091	NA	NA	NA	41.44	NA	54.1	NA	260.0818226	NA	263.1782532	PW3321T1	0.742857143	0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1169	77	0	0	NA	17qA3.3	chr17-3545491-89046578	2	2	0	0.52	2	NON-ABERRANT	1	0.449615385	sgMlh1	colon
chr7	6480610	6480610	GA	G	ENSMUST00000209866.3	5	ENSMUSG00000096228	FS	F/X	182	Olfr5	ENSMUST00000209866.3:c.545del	ENSMUSP00000147586.2:p.Phe182SerfsTer21	H-2-Kb	9	12	0	VMFPHYSTC	NA	NetMHCpan	24.4	NA	NA	322	0.05	46.264	NA	NA	NA	48.75	NA	24.4	NA	49.4435904	NA	43.77740356	PW3321T1	-0.328571429	0.285714286	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.057	322	0	0	NA	7qA1	chr7-4477867-142893198	2	1	1	0.52	2	NON-ABERRANT	1	0.219230769	sgMlh1	colon
chr6	123741591	123741591	G	A	ENSMUST00000172391.3	5	ENSMUSG00000091620	missense	M/I	634	Vmn2r23	ENSMUST00000172391.3:c.1902G>A	ENSMUSP00000126682.2:p.Met634Ile	H-2-Kb	9	10	2	LILCFFCSL	LMLCFFCSL	NetMHC	60.1	57.36	0.954	392	0.023	90.233	52.847	0.586	57.36	60.1	58	85.6	42.37502818	94.86587133	48.33369531	100.0575812	PW3321T1	2.485714286	3.242857143	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;Vardict	3	0.023	392	0	0	NA	6qF2	chr6-4758661-144023076	2	1	1	0.52	2	NON-ABERRANT	1	0.088461538	sgMlh1	colon
chr6	24562512	24562512	G	A	ENSMUST00000117688.1	5	ENSMUSG00000029685	missense	D/N	158	Asb15	ENSMUST00000117688.1:c.472G>A	ENSMUSP00000112965.1:p.Asp158Asn	H-2-Kb	9	8	4	GSYNMVSAL	GSYDMVSAL	NetMHC	85.66	231.59	2.704	181	0.155	164.737	203.833	1.237	231.59	85.66	194.7	141	199.5767748	191.9154771	208.0894201	188.4733717	PW3321T1	0.871428571	0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.16	181	0	0	NA	6qA3.1	chr6-4758661-144023076	2	1	1	0.52	2	NON-ABERRANT	1	0.615384615	sgMlh1	colon
chr4	156174254	156174254	C	T	ENSMUST00000180572.1	5	ENSMUSG00000041936	missense	G/D	947	Agrn	ENSMUST00000180572.1:c.2840G>A	ENSMUSP00000137931.1:p.Gly947Asp	H-2-Kb	9	8	4	VTYDNECQL	VTYGNECQL	SMMPMBEC	105.257	100.751	0.957	138	0.036	112.667	106.345	0.944	104.52	109.96	314.1	233.6	108.1707896	115.3745446	100.7511472	105.2567606	PW3321T1	-1.285714286	-0.828571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.048	138	0	0	NA	4qE2	chr4-5799947-156200568	2	1	1	0.52	2	NON-ABERRANT	1	0.184615385	sgMlh1	colon
chr15	101194842	101194842	TG	T	ENSMUST00000000544.11	1	ENSMUSG00000000532	FS	W/X	122	Acvr1b	ENSMUST00000000544.11:c.368del	ENSMUSP00000000544.9:p.Gly123AlafsTer111	H-2-Kb	9	49	0	RGWTWRTPL	NA	NetMHCpan	103	NA	NA	83	0.06	399.076	NA	NA	NA	115.42	NA	103	NA	895.5915762	NA	682.7315929	PW3321T1	-0.785714286	-0.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.073	83	0	0	NA	15qF1	chr15-3280572-103103068	2	1	1	0.52	2	NON-ABERRANT	1	0.280769231	sgMlh1	colon
chr7	85409675	85409675	GA	G	ENSMUST00000233859.1	NA	ENSMUSG00000091006	FS	F/X	559	Vmn2r69	ENSMUST00000233859.1:c.1677del	ENSMUSP00000156696.1:p.Leu560SerfsTer20	H-2-Kb	9	6	7	IKIDFFSQI	IKIDFFLTN	NetMHCpan	119.6	10730.2	89.717	134	0.075	165.961	5844.891	35.219	9844.3	125.74	10730.2	119.6	1845.482792	282.5595563	1084.551052	206.1816449	PW3321T1	0.971428571	0.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.072	134	0	0	NA	7qD3	chr7-4477867-142893198	2	1	1	0.52	2	NON-ABERRANT	1	0.276923077	sgMlh1	colon
chr15	101194842	101194842	TG	T	ENSMUST00000000544.11	1	ENSMUSG00000000532	FS	W/X	122	Acvr1b	ENSMUST00000000544.11:c.368del	ENSMUSP00000000544.9:p.Gly123AlafsTer111	H-2-Kb	9	82	0	QGYPFLSSA	NA	NetMHCpan	181.5	NA	NA	83	0.06	454.861	NA	NA	NA	212.92	NA	181.5	NA	696.8029811	NA	964.3840079	PW3321T1	0.557142857	0.557142857	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.073	83	0	0	NA	15qF1	chr15-3280572-103103068	2	1	1	0.52	2	NON-ABERRANT	1	0.280769231	sgMlh1	colon
chr7	85409675	85409675	GA	G	ENSMUST00000233859.1	NA	ENSMUSG00000091006	FS	F/X	559	Vmn2r69	ENSMUST00000233859.1:c.1677del	ENSMUSP00000156696.1:p.Leu560SerfsTer20	H-2-Kb	9	14	0	IYIVLKSPL	NA	NetMHC	256.72	NA	NA	134	0.075	298.038	NA	NA	NA	256.72	NA	305.6	NA	290.4758291	NA	320.0737072	PW3321T1	1.428571429	1.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.072	134	0	0	NA	7qD3	chr7-4477867-142893198	2	1	1	0.52	2	NON-ABERRANT	1	0.276923077	sgMlh1	colon
chr17	28974308	28974308	CA	C	ENSMUST00000119274.2	1	ENSMUSG00000024006	FS	F/X	382	Stk38	ENSMUST00000119274.2:c.1146del	ENSMUSP00000113657.1:p.Phe382LeufsTer42	H-2-Kb	9	40	0	MNFQSLIFL	NA	NetMHCpan	122.5	NA	NA	77	0.117	305.221	NA	NA	NA	257.17	NA	122.5	NA	353.2726369	NA	391.0659467	PW3321T1	1.914285714	1.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1169	77	0	0	NA	17qA3.3	chr17-3545491-89046578	2	2	0	0.52	2	NON-ABERRANT	1	0.449615385	sgMlh1	colon
chr7	27189414	27189414	AG	A	ENSMUST00000080356.9	1	ENSMUSG00000061479	FS	P/X	187	Snrpa	ENSMUST00000080356.9:c.560del	ENSMUSP00000079228.3:p.Pro187LeufsTer94	H-2-Kb	9	74	0	TSPSWSLTM	NA	NetMHC	327.54	NA	NA	63	0.159	463.107	NA	NA	NA	327.54	NA	456.2	NA	470.0131405	NA	753.7893549	PW3321T1	0.128571429	0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.166	63	0	0	NA	7qA3	chr7-4477867-142893198	2	1	1	0.52	2	NON-ABERRANT	1	0.638461538	sgMlh1	colon
chr7	141793176	141793176	CG	C	ENSMUST00000041924.13	5	ENSMUSG00000037974	FS	R/X	328	Muc5ac	ENSMUST00000041924.13:c.986del	ENSMUSP00000039699.7:p.Gly329AlafsTer106	H-2-Kb	9	80	0	TMGHFMHRV	NA	NetMHC	332.1	NA	NA	102	0.049	370.293	NA	NA	NA	332.1	NA	820.5	NA	393.6497682	NA	346.9365057	PW3321T1	-0.342857143	-0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.061	102	0	0	NA	7qF5	chr7-4477867-142893198	2	1	1	0.52	2	NON-ABERRANT	1	0.234615385	sgMlh1	colon
chr7	141793176	141793176	CG	C	ENSMUST00000041924.13	5	ENSMUSG00000037974	FS	R/X	328	Muc5ac	ENSMUST00000041924.13:c.986del	ENSMUSP00000039699.7:p.Gly329AlafsTer106	H-2-Kb	9	63	0	MTLIRWAVF	NA	SMMPMBEC	202.885	NA	NA	102	0.049	287.79	NA	NA	NA	359.52	NA	268.6	NA	306.9799422	NA	202.8850284	PW3321T1	1.671428571	1.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.061	102	0	0	NA	7qF5	chr7-4477867-142893198	2	1	1	0.52	2	NON-ABERRANT	1	0.234615385	sgMlh1	colon
chr7	6480610	6480610	GA	G	ENSMUST00000209866.3	5	ENSMUSG00000096228	FS	F/X	182	Olfr5	ENSMUST00000209866.3:c.545del	ENSMUSP00000147586.2:p.Phe182SerfsTer21	H-2-Kb	9	5	7	NVLNHFSVM	NVLNHFFCD	NetMHCpan	374.8	21851	58.3	322	0.05	476.085	11332.239	23.803	19501.4	533.29	21851	374.8	3163.078717	499.0108631	2637.849417	453.1583638	PW3321T1	0.742857143	1.071428571	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;Vardict	3	0.057	322	0	0	NA	7qA1	chr7-4477867-142893198	2	1	1	0.52	2	NON-ABERRANT	1	0.219230769	sgMlh1	colon
chr14	69797067	69797067	TG	T	ENSMUST00000022665.3	1	ENSMUSG00000022075	FS	P/X	236	Rhobtb2	ENSMUST00000022665.3:c.708del	ENSMUSP00000022665.2:p.Lys237SerfsTer64	H-2-Kb	9	34	0	SWKTRSVRM	NA	SMM	331.215	NA	NA	38	0.184	498.058	NA	NA	NA	605.05	NA	3139.9	NA	331.2150024	NA	391.0659467	PW3321T1	-1.185714286	-1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.171	38	0	0	NA	14qD2	chr14-3072210-123348696	2	1	1	0.52	2	NON-ABERRANT	1	0.657692308	sgMlh1	colon
chr19	13095417	13095417	G	A	ENSMUST00000215229.1	5	ENSMUSG00000061637	missense	A/V	77	Olfr1457	ENSMUST00000215229.1:c.230C>T	ENSMUSP00000150957.1:p.Ala77Val	H-2-Kb	9	4	8	VDFCYSSVV	VDFCYSSAV	SMMPMBEC	300.781	242.801	0.807	185	0.049	461.435	283.2	0.614	356.44	1009.29	323.6	602.9	227.0439846	319.9705442	242.8007366	300.7807237	PW3321T1	1.542857143	1.542857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.05	185	0	0	NA	19qA	chr19-3279478-61225035	2	1	1	0.52	2	NON-ABERRANT	1	0.192307692	sgMlh1	colon
chr9	56887870	56887870	C	T	ENSMUST00000035661.6	1	ENSMUSG00000032911	missense	T/I	963	Cspg4	ENSMUST00000035661.6:c.2888C>T	ENSMUSP00000038909.5:p.Thr963Ile	H-2-Db	9	11	1	ISFTNEDLL	TSFTNEDLL	NetMHCpan	26.8	27.8	1.037	117	0.043	57.079	63.452	1.112	56.99	40.61	27.8	26.8	94.54095827	89.25241991	69.91494173	73.54785311	PW3321T1	-0.114285714	-0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.053	117	0	0	NA	9qB	chr9-7282188-124108155	2	1	1	0.52	2	NON-ABERRANT	1	0.203846154	sgMlh1	colon
chr9	56887870	56887870	C	T	ENSMUST00000035661.6	1	ENSMUSG00000032911	missense	T/I	963	Cspg4	ENSMUST00000035661.6:c.2888C>T	ENSMUSP00000038909.5:p.Thr963Ile	H-2-Kb	8	11	1	ISFTNEDL	TSFTNEDL	SMMPMBEC	173.277	478.344	2.761	117	0.043	356.407	1340.975	3.762	3232.99	758.08	2104.2	506.4	577.750061	206.414404	478.3436356	173.2766328	PW3321T1	-0.771428571	-0.671428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.053	117	0	0	NA	9qB	chr9-7282188-124108155	2	1	1	0.52	2	NON-ABERRANT	1	0.203846154	sgMlh1	colon
chr9	56887870	56887870	C	T	ENSMUST00000035661.6	1	ENSMUSG00000032911	missense	T/I	963	Cspg4	ENSMUST00000035661.6:c.2888C>T	ENSMUSP00000038909.5:p.Thr963Ile	H-2-Kb	9	11	1	ISFTNEDLL	TSFTNEDLL	SMMPMBEC	198.267	328.284	1.656	117	0.043	204.736	440.879	2.153	523.57	200.49	1350.4	444	358.1871488	208.9825384	328.2842143	198.2668013	PW3321T1	-0.114285714	-0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.053	117	0	0	NA	9qB	chr9-7282188-124108155	2	1	1	0.52	2	NON-ABERRANT	1	0.203846154	sgMlh1	colon
chr9	120018056	120018056	AG	A	ENSMUST00000111635.2	1	ENSMUSG00000079243	FS	P/X	587	Xirp1	ENSMUST00000111635.2:c.1760del	ENSMUSP00000107262.2:p.Pro587LeufsTer21	H-2-Kb	9	17	0	VMYRLSVGC	NA	SMM	299.992	NA	NA	109	0.11	356.554	NA	NA	NA	406.03	NA	538.1	NA	299.9922256	NA	307.0789168	PW3321T1	0.5	1.071428571	FALSE	TRUE	FALSE	1	FALSE	0	Strelka2;Vardict	2	0.1101	109	0	0	NA	9qF4	chr9-7282188-124108155	2	1	1	0.52	2	NON-ABERRANT	1	0.423461538	sgMlh1	colon
chr17	18185134	18185134	GA	G	ENSMUST00000169686.2	5	ENSMUSG00000091350	FS	K/X	847	Vmn2r92	ENSMUST00000169686.2:c.2548del	ENSMUSP00000128685.1:p.Thr850HisfsTer34	H-2-Db	9	24	0	YSFRNEFCF	NA	NetMHC	63.68	NA	NA	109	0.284	173.294	NA	NA	NA	63.68	NA	82	NA	308.7592661	NA	264.5879126	PW3322T1	-0.085714286	-0.085714286	FALSE	FALSE	FALSE	1	FALSE	0	Strelka2;Vardict	2	0.2844	109	0	0	NA	17qA3.2	chr17-3145212-89046578	2	1	1	0.66	2	NON-ABERRANT	1	0.861818182	sgMlh1	colon
chr3	123627969	123627969	T	G	ENSMUST00000154668.7	5	ENSMUSG00000027977	missense	K/T	405	Ndst3	ENSMUST00000154668.7:c.1214A>C	ENSMUSP00000118207.1:p.Lys405Thr	H-2-Db	9	5	7	QMILNKTFA	QMILNKKFA	NetMHC	95.59	3171.63	33.18	174	0.063	155.779	2009.985	12.903	3171.63	95.59	4710.3	714.2	574.9366578	127.2389276	848.3401077	184.3189552	PW3322T1	0.685714286	0.7	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.06	174	0	0	NA	3qG1	chr3-15331914-159911278	2	1	1	0.66	2	NON-ABERRANT	1	0.181818182	sgMlh1	colon
chr2	49488735	49488735	GA	G	ENSMUST00000092123.10	1	ENSMUSG00000069495	FS	E/X	67	Epc2	ENSMUST00000092123.10:c.207del	ENSMUSP00000089758.4:p.Glu70ArgfsTer39	H-2-Kb	8	43	0	SSFIFSLL	NA	NetMHC	2.08	NA	NA	207	0.13	2.457	NA	NA	NA	2.08	NA	2.5	NA	2.414015198	NA	2.739933359	PW3322T1	2.3	2.3	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1304	207	0	0	NA	2qC1.1	chr2-4513773-181006567	2	1	1	0.66	2	NON-ABERRANT	1	0.395151515	sgMlh1	colon
chr14	105116967	105116967	GA	G	ENSMUST00000163499.1	1	ENSMUSG00000022119	FS	S/X	990	Rbm26	ENSMUST00000163499.1:c.2968del	ENSMUSP00000128197.1:p.Ser990HisfsTer9	H-2-Kb	8	5	7	VGFFFFHL	VGFFFFSL	SMM	1.922	2.587	1.346	27	0.593	2.592	3.233	1.247	3.7	3.24	4	3.7	2.586663888	1.921940772	2.76528565	1.944195797	PW3322T1	1.628571429	1.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.579	27	0	0	NA	14qE2.3	chr14-3072210-123348696	2	1	1	0.66	2	NON-ABERRANT	1	1	sgMlh1	colon
chr5	98872407	98872407	GT	G	ENSMUST00000200388.1	1	ENSMUSG00000029335	FS	F/X	230	Bmp3	ENSMUST00000200388.1:c.692del	ENSMUSP00000142907.1:p.Phe231SerfsTer122	H-2-Kb	8	99	0	RAFRLSPL	NA	NetMHC	9.98	NA	NA	149	0.383	27.049	NA	NA	NA	9.98	NA	18.8	NA	35.29717922	NA	35.78821189	PW3322T1	0.757142857	0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.397	149	0	0	NA	5qE3	chr5-3704467-150534477	2	1	1	0.66	2	NON-ABERRANT	1	0.601515152	sgMlh1	colon
chr11	121575355	121575355	G	A	ENSMUST00000103013.9	1	ENSMUSG00000039230	missense	M/I	602	Tbcd	ENSMUST00000103013.9:c.1806G>A	ENSMUSP00000099302.3:p.Met602Ile	H-2-Kb	8	10	2	AIHVFPAL	AMHVFPAL	NetMHC	17.3	21.3	1.231	166	0.157	37.824	54.289	1.435	21.3	17.3	24.1	26.7	89.27708467	49.17450535	84.47729517	48.94856902	PW3322T1	1.757142857	1.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.169	166	0	0	NA	11qE2	chr11-3133205-121575355	2	1	1	0.66	2	NON-ABERRANT	1	0.512121212	sgMlh1	colon
chr15	47586996	47586996	C	T	ENSMUST00000100670.9	5	ENSMUSG00000022311	missense	V/I	3591	Csmd3	ENSMUST00000100670.9:c.10771G>A	ENSMUSP00000098235.3:p.Val3591Ile	H-2-Kb	8	8	4	ATYIFQGF	ATYVFQGF	NetMHC	17.33	13.86	0.8	84	0.083	63.335	53.874	0.851	13.86	17.33	20.1	22.5	106.106014	115.2762924	87.64759423	104.169361	PW3322T1	0.6	0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.089	84	0	0	NA	15qB3.3	chr15-6735277-103525164	2	1	1	0.66	2	NON-ABERRANT	1	0.26969697	sgMlh1	colon
chr2	49488735	49488735	GA	G	ENSMUST00000092123.10	1	ENSMUSG00000069495	FS	E/X	67	Epc2	ENSMUST00000092123.10:c.207del	ENSMUSP00000089758.4:p.Glu70ArgfsTer39	H-2-Kb	8	14	1	RAWSFQFL	NA	NetMHC	18.85	NA	NA	207	0.13	34.565	NA	NA	NA	18.85	NA	22.6	NA	46.53074435	NA	47.61458462	PW3322T1	0.857142857	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1304	207	0	0	NA	2qC1.1	chr2-4513773-181006567	2	1	1	0.66	2	NON-ABERRANT	1	0.395151515	sgMlh1	colon
chr2	111621816	111621816	GA	G	ENSMUST00000213398.1	2	ENSMUSG00000094858	FS	F/X	86	Olfr1297	ENSMUST00000213398.1:c.257del	ENSMUSP00000150543.1:p.Phe86SerfsTer32	H-2-Kb	8	26	0	SFFPTALL	NA	NetMHC	84.07	NA	NA	225	0.333	115.485	NA	NA	NA	84.07	NA	133.8	NA	101.3304567	NA	129.6402918	PW3322T1	1.814285714	1.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.343	225	0	0	NA	2qE3	chr2-4513773-181006567	2	1	1	0.66	2	NON-ABERRANT	1	1	sgMlh1	colon
chr5	98872407	98872407	GT	G	ENSMUST00000200388.1	1	ENSMUSG00000029335	FS	F/X	230	Bmp3	ENSMUST00000200388.1:c.692del	ENSMUSP00000142907.1:p.Phe231SerfsTer122	H-2-Kb	8	17	0	SWYTPTML	NA	NetMHC	107.55	NA	NA	149	0.383	332.556	NA	NA	NA	107.55	NA	401.4	NA	299.7367541	NA	365.3759857	PW3322T1	0.071428571	0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.397	149	0	0	NA	5qE3	chr5-3704467-150534477	2	1	1	0.66	2	NON-ABERRANT	1	0.601515152	sgMlh1	colon
chr2	111621816	111621816	GA	G	ENSMUST00000213398.1	2	ENSMUSG00000094858	FS	F/X	86	Olfr1297	ENSMUST00000213398.1:c.257del	ENSMUSP00000150543.1:p.Phe86SerfsTer32	H-2-Kb	8	25	0	RSFFPTAL	NA	NetMHCpan	50.3	NA	NA	225	0.333	103.223	NA	NA	NA	128.29	NA	50.3	NA	90.10315536	NA	116.3429308	PW3322T1	1.157142857	1.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.343	225	0	0	NA	2qE3	chr2-4513773-181006567	2	1	1	0.66	2	NON-ABERRANT	1	1	sgMlh1	colon
chr18	38254350	38254350	AC	A	ENSMUST00000025314.6	1	ENSMUSG00000024442	FS	H/X	214	Dele1	ENSMUST00000025314.6:c.647del	ENSMUSP00000025314.5:p.Pro216LeufsTer19	H-2-Kb	8	23	0	RLFLWRRL	NA	NetMHCpan	66	NA	NA	71	0.366	80.976	NA	NA	NA	139.83	NA	66	NA	95.00358634	NA	66.94836882	PW3322T1	0.614285714	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.348	71	0	0	NA	18qB3	chr18-3299673-86713505	2	1	1	0.66	2	NON-ABERRANT	1	1	sgMlh1	colon
chr6	42927974	42927974	CT	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	FS	F/X	248	Olfr446	ENSMUST00000215369.1:c.747del	ENSMUSP00000149013.1:p.Phe249LeufsTer37	H-2-Kb	8	8	5	VGLFLAVL	VGLFFGCA	NetMHCpan	56.4	513.4	9.103	142	0.077	92.155	586.661	6.366	2272.35	155.89	513.4	56.4	651.2383991	86.64430052	522.0835386	97.66523514	PW3322T1	2.828571429	2.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.083	142	0	0	NA	6qB2.1	chr6-3483595-146766604	2	1	1	0.66	2	NON-ABERRANT	1	0.251515152	sgMlh1	colon
chr10	116776782	116776782	CA	C	ENSMUST00000048229.8	1	ENSMUSG00000034057	FS	F/X	887	Myrfl	ENSMUST00000048229.8:c.2661del	ENSMUSP00000037477.7:p.Phe887LeufsTer59	H-2-Kb	8	54	0	LTTSFTFL	NA	SMM	131.747	NA	NA	57	0.316	144.483	NA	NA	NA	158.81	NA	156	NA	131.7467771	NA	132.965815	PW3322T1	0.928571429	0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.325	57	0	0	NA	10qD2	chr10-4969340-130453386	2	1	1	0.66	2	NON-ABERRANT	1	0.984848485	sgMlh1	colon
chr1	52799292	52799292	T	C	ENSMUST00000027271.8	1	ENSMUSG00000026102	missense	E/G	66	Inpp1	ENSMUST00000027271.8:c.197A>G	ENSMUSP00000027271.2:p.Glu66Gly	H-2-Kb	8	10	2	MGNKFPGL	MENKFPGL	SMM	106.842	471.781	4.416	113	0.345	139.382	2856.48	20.494	6845.09	160.53	5208.6	179.1	471.7805149	106.8415057	504.3592613	118.2333514	PW3322T1	-0.457142857	-0.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.332	113	0	0	NA	1qC1.1	chr1-6245696-193241229	2	2	0	0.66	2	NON-ABERRANT	1	1	sgMlh1	colon
chr1	173963979	173963979	CT	C	ENSMUST00000000266.8	1	ENSMUSG00000026535	FS	S/X	378	Ifi202b	ENSMUST00000000266.8:c.1132del	ENSMUSP00000000266.7:p.Ser378ValfsTer18	H-2-Kb	8	17	0	YAMEFGMI	NA	NetMHCpan	93.8	NA	NA	142	0.049	440.744	NA	NA	NA	202.69	NA	93.8	NA	876.4759423	NA	678.797134	PW3322T1	1.285714286	1.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.059	142	0	0	NA	1qH3	chr1-6245696-193241229	2	2	0	0.66	2	NON-ABERRANT	1	0.178787879	sgMlh1	colon
chr16	11319808	11319808	AG	A	ENSMUST00000023140.5	1	ENSMUSG00000022496	FS	K/X	136	Tnfrsf17	ENSMUST00000023140.5:c.412del	ENSMUSP00000023140.5:p.Asp138IlefsTer73	H-2-Kb	8	16	0	ISSRFQPW	NA	SMM	146.467	NA	NA	129	0.039	241.786	NA	NA	NA	225.5	NA	1742.5	NA	146.4670721	NA	258.0714726	PW3322T1	-1.328571429	-0.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.05	129	0	0	NA	16qA1	chr16-3948854-96819699	2	1	1	0.66	2	NON-ABERRANT	1	0.151515152	sgMlh1	colon
chr2	153399446	153399446	AG	A	ENSMUST00000109790.1	5	ENSMUSG00000042548	FS	G/X	640	Asxl1	ENSMUST00000109790.1:c.1925del	ENSMUSP00000105413.1:p.Gly642ValfsTer58	H-2-Kb	8	33	0	VVMVVRPV	NA	NetMHC	253.25	NA	NA	59	0.085	329.794	NA	NA	NA	253.25	NA	280.5	NA	467.4552051	NA	379.0879676	PW3322T1	1.8	1.8	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0847	59	0	0	NA	2qH1	chr2-4513773-181006567	2	1	1	0.66	2	NON-ABERRANT	1	0.256666667	sgMlh1	colon
chr5	98872407	98872407	GT	G	ENSMUST00000200388.1	1	ENSMUSG00000029335	FS	F/X	230	Bmp3	ENSMUST00000200388.1:c.692del	ENSMUSP00000142907.1:p.Phe231SerfsTer122	H-2-Kb	8	16	0	ISWYTPTM	NA	NetMHCpan	62.7	NA	NA	149	0.383	410.943	NA	NA	NA	291.32	NA	62.7	NA	719.0183929	NA	530.5667136	PW3322T1	-0.585714286	-0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.397	149	0	0	NA	5qE3	chr5-3704467-150534477	2	1	1	0.66	2	NON-ABERRANT	1	0.601515152	sgMlh1	colon
chr2	153399446	153399446	AG	A	ENSMUST00000109790.1	5	ENSMUSG00000042548	FS	G/X	640	Asxl1	ENSMUST00000109790.1:c.1925del	ENSMUSP00000105413.1:p.Gly642ValfsTer58	H-2-Kb	8	36	0	VVRPVATL	NA	SMM	210.737	NA	NA	59	0.085	296.367	NA	NA	NA	295.06	NA	306	NA	210.7366151	NA	297.6733808	PW3322T1	1.028571429	1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0847	59	0	0	NA	2qH1	chr2-4513773-181006567	2	1	1	0.66	2	NON-ABERRANT	1	0.256666667	sgMlh1	colon
chr6	55077648	55077648	C	T	ENSMUST00000003572.9	1	ENSMUSG00000029777	missense	R/C	647	Gars	ENSMUST00000003572.9:c.1939C>T	ENSMUSP00000003572.8:p.Arg647Cys	H-2-Kb	8	8	4	IGRCYART	IGRRYART	SMMPMBEC	183.122	83.703	0.457	154	0.078	298.167	108.918	0.365	84.87	334.07	686.1	844.7	132.965815	262.2647967	83.70280268	183.1217795	PW3322T1	-1.014285714	-0.271428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.077	154	0	0	NA	6qB3	chr6-3483595-146766604	2	1	1	0.66	2	NON-ABERRANT	1	0.233333333	sgMlh1	colon
chr10	116776782	116776782	CA	C	ENSMUST00000048229.8	1	ENSMUSG00000034057	FS	F/X	887	Myrfl	ENSMUST00000048229.8:c.2661del	ENSMUSP00000037477.7:p.Phe887LeufsTer59	H-2-Kb	8	56	0	TSFTFLSS	NA	SMM	56.46	NA	NA	57	0.316	115.808	NA	NA	NA	384.58	NA	157.7	NA	56.4598864	NA	73.91626265	PW3322T1	0.9	0.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.325	57	0	0	NA	10qD2	chr10-4969340-130453386	2	1	1	0.66	2	NON-ABERRANT	1	0.984848485	sgMlh1	colon
chr6	42927974	42927974	CT	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	FS	F/X	248	Olfr446	ENSMUST00000215369.1:c.747del	ENSMUSP00000149013.1:p.Phe249LeufsTer37	H-2-Kb	8	7	6	VVGLFLAV	VVGLFFGC	SMMPMBEC	176.905	640.826	3.622	142	0.077	258.229	2359.152	9.136	4012.41	396.82	4510.9	326.9	705.8948282	189.5570756	640.8258172	176.9049561	PW3322T1	2.885714286	2.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.083	142	0	0	NA	6qB2.1	chr6-3483595-146766604	2	1	1	0.66	2	NON-ABERRANT	1	0.251515152	sgMlh1	colon
chr5	98872407	98872407	GT	G	ENSMUST00000200388.1	1	ENSMUSG00000029335	FS	F/X	230	Bmp3	ENSMUST00000200388.1:c.692del	ENSMUSP00000142907.1:p.Phe231SerfsTer122	H-2-Kb	8	8	5	RMLFSRNL	RMLFFPEP	NetMHCpan	142.7	5485.5	38.441	149	0.383	419.96	4944.206	11.773	14693.39	402.66	5485.5	142.7	3481.288376	437.2602513	4402.911945	595.3056439	PW3322T1	0.5	0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.397	149	0	0	NA	5qE3	chr5-3704467-150534477	2	1	1	0.66	2	NON-ABERRANT	1	0.601515152	sgMlh1	colon
chr18	37638410	37638410	A	G	ENSMUST00000058635.4	NA	ENSMUSG00000050304	missense	V/A	22	Slc25a2	ENSMUST00000058635.4:c.65T>C	ENSMUSP00000052849.2:p.Val22Ala	H-2-Kb	8	6	6	KTYNQAGI	KTYNQVGI	SMM	236.45	683.502	2.891	98	0.041	365.08	866.861	2.374	1290.62	424.85	853.2	448.6	683.502331	236.4503711	880.5215715	305.3092764	PW3322T1	-0.442857143	-0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.054	98	0	0	NA	18qB3	chr18-3299673-86713505	2	1	1	0.66	2	NON-ABERRANT	1	0.163636364	sgMlh1	colon
chr1	17161369	17161369	CA	C	ENSMUST00000026879.7	1	ENSMUSG00000025777	FS	K/X	313	Gdap1	ENSMUST00000026879.7:c.943del	ENSMUSP00000026879.7:p.Arg315GlyfsTer16	H-2-Kb	8	15	0	QKFLAAPL	NA	SMM	182.701	NA	NA	128	0.102	346.754	NA	NA	NA	440.73	NA	1148.9	NA	182.7006111	NA	252.7784229	PW3322T1	1.214285714	1.214285714	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.113	128	0	0	NA	1qA3	chr1-6245696-193241229	2	2	0	0.66	2	NON-ABERRANT	1	0.342424242	sgMlh1	colon
chr17	55799663	55799663	AG	A	ENSMUST00000025004.6	1	ENSMUSG00000032915	FS	G/X	301	Adgre4	ENSMUST00000025004.6:c.906del	ENSMUSP00000025004.6:p.Ser303AlafsTer46	H-2-Kb	8	33	0	VSTCPALL	NA	SMM	290.898	NA	NA	143	0.035	443.125	NA	NA	NA	474.4	NA	1060.2	NA	290.8975074	NA	411.8508816	PW3322T1	1.257142857	1.314285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.045	143	0	0	NA	17qD	chr17-3145212-89046578	2	1	1	0.66	2	NON-ABERRANT	1	0.136363636	sgMlh1	colon
chr5	98872407	98872407	GT	G	ENSMUST00000200388.1	1	ENSMUSG00000029335	FS	F/X	230	Bmp3	ENSMUST00000200388.1:c.692del	ENSMUSP00000142907.1:p.Phe231SerfsTer122	H-2-Kb	8	77	0	MSYLGQSI	NA	NetMHCpan	155.6	NA	NA	149	0.383	493.165	NA	NA	NA	544.4	NA	155.6	NA	530.5667136	NA	455.7639811	PW3322T1	0.214285714	0.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.397	149	0	0	NA	5qE3	chr5-3704467-150534477	2	1	1	0.66	2	NON-ABERRANT	1	0.601515152	sgMlh1	colon
chr5	98872407	98872407	GT	G	ENSMUST00000200388.1	1	ENSMUSG00000029335	FS	F/X	230	Bmp3	ENSMUST00000200388.1:c.692del	ENSMUSP00000142907.1:p.Phe231SerfsTer122	H-2-Kb	8	96	0	SLIRAFRL	NA	NetMHCpan	182.7	NA	NA	149	0.383	412.13	NA	NA	NA	610.21	NA	182.7	NA	427.3069928	NA	396.9538331	PW3322T1	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.397	149	0	0	NA	5qE3	chr5-3704467-150534477	2	1	1	0.66	2	NON-ABERRANT	1	0.601515152	sgMlh1	colon
chr6	42927974	42927974	CT	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	FS	F/X	248	Olfr446	ENSMUST00000215369.1:c.747del	ENSMUSP00000149013.1:p.Phe249LeufsTer37	H-2-Kb	8	36	0	CFTAFSTL	NA	SMM	226.329	NA	NA	142	0.077	365.843	NA	NA	NA	624.52	NA	332.9	NA	226.3288934	NA	398.7860888	PW3322T1	1.285714286	1.285714286	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.083	142	0	0	NA	6qB2.1	chr6-3483595-146766604	2	1	1	0.66	2	NON-ABERRANT	1	0.251515152	sgMlh1	colon
chr6	14718217	14718217	AT	A	ENSMUST00000045096.5	1	ENSMUSG00000042717	FS	K/X	899	Ppp1r3a	ENSMUST00000045096.5:c.2697del	ENSMUSP00000049054.4:p.Lys899AsnfsTer51	H-2-Kb	8	43	0	RSWAMPCL	NA	SMMPMBEC	319.698	NA	NA	148	0.264	492.008	NA	NA	NA	1077.02	NA	605.8	NA	378.2160895	NA	319.6980594	PW3322T1	0.957142857	0.957142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.259	148	0	0	NA	6qA1	chr6-3483595-146766604	2	1	1	0.66	2	NON-ABERRANT	1	0.784848485	sgMlh1	colon
chr16	11319808	11319808	AG	A	ENSMUST00000023140.5	1	ENSMUSG00000022496	FS	K/X	136	Tnfrsf17	ENSMUST00000023140.5:c.412del	ENSMUSP00000023140.5:p.Asp138IlefsTer73	H-2-Kb	9	49	0	VSWGWRSQL	NA	NetMHC	24.91	NA	NA	129	0.039	55.326	NA	NA	NA	24.91	NA	50.5	NA	78.00276543	NA	60.15199005	PW3322T1	-1.028571429	-0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.05	129	0	0	NA	16qA1	chr16-3948854-96819699	2	1	1	0.66	2	NON-ABERRANT	1	0.151515152	sgMlh1	colon
chr14	105116967	105116967	GA	G	ENSMUST00000163499.1	1	ENSMUSG00000022119	FS	S/X	990	Rbm26	ENSMUST00000163499.1:c.2968del	ENSMUSP00000128197.1:p.Ser990HisfsTer9	H-2-Kb	9	5	7	VGFFFFHLF	VGFFFFSLV	NetMHCpan	13.4	5.2	0.388	27	0.593	29.815	13.79	0.463	6.73	32.45	5.2	13.4	20.85018919	27.54926395	24.00214196	32.08115533	PW3322T1	2.085714286	2.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.579	27	0	0	NA	14qE2.3	chr14-3072210-123348696	2	1	1	0.66	2	NON-ABERRANT	1	1	sgMlh1	colon
chr17	55799663	55799663	AG	A	ENSMUST00000025004.6	1	ENSMUSG00000032915	FS	G/X	301	Adgre4	ENSMUST00000025004.6:c.906del	ENSMUSP00000025004.6:p.Ser303AlafsTer46	H-2-Kb	9	25	0	IIPTPFASV	NA	NetMHC	45.03	NA	NA	143	0.035	395.526	NA	NA	NA	45.03	NA	174.3	NA	616.7511955	NA	700.2449734	PW3322T1	0.585714286	1.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.045	143	0	0	NA	17qD	chr17-3145212-89046578	2	1	1	0.66	2	NON-ABERRANT	1	0.136363636	sgMlh1	colon
chr15	47586996	47586996	C	T	ENSMUST00000100670.9	5	ENSMUSG00000022311	missense	V/I	3591	Csmd3	ENSMUST00000100670.9:c.10771G>A	ENSMUSP00000098235.3:p.Val3591Ile	H-2-Kb	9	8	4	ATYIFQGFI	ATYVFQGFI	NetMHC	48.82	37.66	0.771	84	0.083	155.083	145.118	0.936	37.66	48.82	43	49.4	247.2350273	299.3022626	265.0025177	260.7654204	PW3322T1	1.342857143	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.089	84	0	0	NA	15qB3.3	chr15-6735277-103525164	2	1	1	0.66	2	NON-ABERRANT	1	0.26969697	sgMlh1	colon
chr11	121575355	121575355	G	A	ENSMUST00000103013.9	1	ENSMUSG00000039230	missense	M/I	602	Tbcd	ENSMUST00000103013.9:c.1806G>A	ENSMUSP00000099302.3:p.Met602Ile	H-2-Kb	9	10	2	AIHVFPALL	AMHVFPALL	NetMHC	56.64	46.93	0.829	166	0.157	146.8	73.683	0.502	46.93	56.64	47.8	70.7	99.56575699	222.8999649	153.5500634	317.8703353	PW3322T1	1.657142857	1.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.169	166	0	0	NA	11qE2	chr11-3133205-121575355	2	1	1	0.66	2	NON-ABERRANT	1	0.512121212	sgMlh1	colon
chr10	116776782	116776782	CA	C	ENSMUST00000048229.8	1	ENSMUSG00000034057	FS	F/X	887	Myrfl	ENSMUST00000048229.8:c.2661del	ENSMUSP00000037477.7:p.Phe887LeufsTer59	H-2-Kb	9	56	0	TSFTFLSST	NA	NetMHC	58.31	NA	NA	57	0.316	113.96	NA	NA	NA	58.31	NA	61.1	NA	192.8013187	NA	166.8207233	PW3322T1	0.914285714	0.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.325	57	0	0	NA	10qD2	chr10-4969340-130453386	2	1	1	0.66	2	NON-ABERRANT	1	0.984848485	sgMlh1	colon
chr11	121575355	121575355	G	A	ENSMUST00000103013.9	1	ENSMUSG00000039230	missense	M/I	602	Tbcd	ENSMUST00000103013.9:c.1806G>A	ENSMUSP00000099302.3:p.Met602Ile	H-2-Kb	9	9	3	IAIHVFPAL	IAMHVFPAL	NetMHCpan	29.6	23.8	0.804	166	0.157	128.285	121.703	0.949	63	66.79	23.8	29.6	207.5439127	224.4450336	180.405594	189.7798067	PW3322T1	1.757142857	1.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.169	166	0	0	NA	11qE2	chr11-3133205-121575355	2	1	1	0.66	2	NON-ABERRANT	1	0.512121212	sgMlh1	colon
chr1	173963979	173963979	CT	C	ENSMUST00000000266.8	1	ENSMUSG00000026535	FS	S/X	378	Ifi202b	ENSMUST00000000266.8:c.1132del	ENSMUSP00000000266.7:p.Ser378ValfsTer18	H-2-Kb	9	15	0	IVYAMEFGM	NA	NetMHC	80.06	NA	NA	142	0.049	91.764	NA	NA	NA	80.06	NA	98	NA	85.52833153	NA	123.6659107	PW3322T1	0.457142857	1.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.059	142	0	0	NA	1qH3	chr1-6245696-193241229	2	2	0	0.66	2	NON-ABERRANT	1	0.178787879	sgMlh1	colon
chr6	42927974	42927974	CT	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	FS	F/X	248	Olfr446	ENSMUST00000215369.1:c.747del	ENSMUSP00000149013.1:p.Phe249LeufsTer37	H-2-Kb	9	7	6	VVGLFLAVL	VVGLFFGCA	NetMHC	85.08	1820.86	21.402	142	0.077	92.461	1216.683	13.159	1820.86	85.08	2536.6	137.5	612.5055101	89.14767066	493.4577793	95.77452351	PW3322T1	2.828571429	2.885714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.083	142	0	0	NA	6qB2.1	chr6-3483595-146766604	2	1	1	0.66	2	NON-ABERRANT	1	0.251515152	sgMlh1	colon
chr2	111621816	111621816	GA	G	ENSMUST00000213398.1	2	ENSMUSG00000094858	FS	F/X	86	Olfr1297	ENSMUST00000213398.1:c.257del	ENSMUSP00000150543.1:p.Phe86SerfsTer32	H-2-Kb	9	25	0	RSFFPTALL	NA	NetMHCpan	70.1	NA	NA	225	0.333	179.006	NA	NA	NA	97.93	NA	70.1	NA	260.0818226	NA	341.3893746	PW3322T1	1.814285714	1.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.343	225	0	0	NA	2qE3	chr2-4513773-181006567	2	1	1	0.66	2	NON-ABERRANT	1	1	sgMlh1	colon
chr5	98872407	98872407	GT	G	ENSMUST00000200388.1	1	ENSMUSG00000029335	FS	F/X	230	Bmp3	ENSMUST00000200388.1:c.692del	ENSMUSP00000142907.1:p.Phe231SerfsTer122	H-2-Kb	9	16	0	ISWYTPTML	NA	NetMHC	103.54	NA	NA	149	0.383	231.615	NA	NA	NA	103.54	NA	124.3	NA	338.9299909	NA	384.8132346	PW3322T1	0.071428571	0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.397	149	0	0	NA	5qE3	chr5-3704467-150534477	2	1	1	0.66	2	NON-ABERRANT	1	0.601515152	sgMlh1	colon
chr6	91989191	91989191	C	T	ENSMUST00000089334.8	1	ENSMUSG00000034037	missense	P/S	802	Fgd5	ENSMUST00000089334.8:c.2404C>T	ENSMUSP00000086748.2:p.Pro802Ser	H-2-Kb	9	8	4	RSRSPFLPL	RSRPPFLPL	NetMHC	108.52	166.58	1.535	86	0.291	219.158	333.947	1.524	166.58	108.52	150.9	146.5	501.3141926	291.8166046	718.2076058	504.9518876	PW3322T1	0.271428571	0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.3	86	0	0	NA	6qD1	chr6-3483595-146766604	2	1	1	0.66	2	NON-ABERRANT	1	0.909090909	sgMlh1	colon
chr5	21919039	21919039	G	A	ENSMUST00000161356.7	5	ENSMUSG00000042453	missense	P/L	2823	Reln	ENSMUST00000161356.7:c.8468C>T	ENSMUSP00000124052.1:p.Pro2823Leu	H-2-Kb	9	8	4	ITYLLPESL	ITYPLPESL	NetMHCpan	60.2	98.5	1.636	109	0.174	185.119	311.035	1.68	200.13	113.05	98.5	60.2	437.6329367	260.0818226	421.9393213	257.1875847	PW3322T1	0.6	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.188	109	0	0	NA	5qA3	chr5-3704467-150534477	2	1	1	0.66	2	NON-ABERRANT	1	0.56969697	sgMlh1	colon
chr2	49488735	49488735	GA	G	ENSMUST00000092123.10	1	ENSMUSG00000069495	FS	E/X	67	Epc2	ENSMUST00000092123.10:c.207del	ENSMUSP00000089758.4:p.Glu70ArgfsTer39	H-2-Kb	9	42	0	SSSFIFSLL	NA	NetMHCpan	63.9	NA	NA	207	0.13	246.17	NA	NA	NA	132.5	NA	63.9	NA	359.8404656	NA	378.6604965	PW3322T1	2.3	2.3	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1304	207	0	0	NA	2qC1.1	chr2-4513773-181006567	2	1	1	0.66	2	NON-ABERRANT	1	0.395151515	sgMlh1	colon
chr15	27772961	27772961	TG	T	ENSMUST00000090247.6	5	ENSMUSG00000022263	FS	P/X	1872	Trio	ENSMUST00000090247.6:c.5616del	ENSMUSP00000087714.5:p.Met1873TrpfsTer45	H-2-Kb	9	18	0	ASFSRTRRM	NA	NetMHCpan	107.8	NA	NA	35	0.143	123.614	NA	NA	NA	137.4	NA	107.8	NA	110.690411	NA	136.536888	PW3322T1	-1.471428571	-0.957142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.17	35	0	0	NA	15qB1	chr15-6735277-103525164	2	1	1	0.66	2	NON-ABERRANT	1	0.515151515	sgMlh1	colon
chr10	116776782	116776782	CA	C	ENSMUST00000048229.8	1	ENSMUSG00000034057	FS	F/X	887	Myrfl	ENSMUST00000048229.8:c.2661del	ENSMUSP00000037477.7:p.Phe887LeufsTer59	H-2-Kb	9	22	0	ISIDVVTNL	NA	NetMHCpan	92.5	NA	NA	57	0.316	395.263	NA	NA	NA	143.01	NA	92.5	NA	871.1842194	NA	647.5152482	PW3322T1	1.285714286	1.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.325	57	0	0	NA	10qD2	chr10-4969340-130453386	2	1	1	0.66	2	NON-ABERRANT	1	0.984848485	sgMlh1	colon
chr2	49488735	49488735	GA	G	ENSMUST00000092123.10	1	ENSMUSG00000069495	FS	E/X	67	Epc2	ENSMUST00000092123.10:c.207del	ENSMUSP00000089758.4:p.Glu70ArgfsTer39	H-2-Kb	9	43	0	SSFIFSLLT	NA	NetMHCpan	136.5	NA	NA	207	0.13	160.592	NA	NA	NA	160.45	NA	136.5	NA	160.7348318	NA	209.0499173	PW3322T1	2.314285714	2.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1304	207	0	0	NA	2qC1.1	chr2-4513773-181006567	2	1	1	0.66	2	NON-ABERRANT	1	0.395151515	sgMlh1	colon
chr6	14718217	14718217	AT	A	ENSMUST00000045096.5	1	ENSMUSG00000042717	FS	K/X	899	Ppp1r3a	ENSMUST00000045096.5:c.2697del	ENSMUSP00000049054.4:p.Lys899AsnfsTer51	H-2-Kb	9	50	0	LNLKMFSKV	NA	NetMHCpan	145	NA	NA	148	0.264	243.251	NA	NA	NA	203.2	NA	145	NA	336.5968133	NA	283.3022345	PW3322T1	0.585714286	0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.259	148	0	0	NA	6qA1	chr6-3483595-146766604	2	1	1	0.66	2	NON-ABERRANT	1	0.784848485	sgMlh1	colon
chr17	55799663	55799663	AG	A	ENSMUST00000025004.6	1	ENSMUSG00000032915	FS	G/X	301	Adgre4	ENSMUST00000025004.6:c.906del	ENSMUSP00000025004.6:p.Ser303AlafsTer46	H-2-Kb	9	49	0	RMVCFLHSL	NA	NetMHCpan	58.3	NA	NA	143	0.035	251.035	NA	NA	NA	229.73	NA	58.3	NA	272.3391013	NA	345.3424772	PW3322T1	1.871428571	1.871428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.045	143	0	0	NA	17qD	chr17-3145212-89046578	2	1	1	0.66	2	NON-ABERRANT	1	0.136363636	sgMlh1	colon
chr6	42927974	42927974	CT	C	ENSMUST00000215369.1	5	ENSMUSG00000073111	FS	F/X	248	Olfr446	ENSMUST00000215369.1:c.747del	ENSMUSP00000149013.1:p.Phe249LeufsTer37	H-2-Kb	9	35	0	LCFTAFSTL	NA	NetMHCpan	91.8	NA	NA	142	0.077	267.181	NA	NA	NA	244.46	NA	91.8	NA	400.9682638	NA	289.9011913	PW3322T1	1.285714286	1.742857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.083	142	0	0	NA	6qB2.1	chr6-3483595-146766604	2	1	1	0.66	2	NON-ABERRANT	1	0.251515152	sgMlh1	colon
chr3	57426556	57426556	C	T	ENSMUST00000029377.7	1	ENSMUSG00000027801	missense	A/V	88	Tm4sf4	ENSMUST00000029377.7:c.263C>T	ENSMUSP00000029377.7:p.Ala88Val	H-2-Kb	9	9	3	RFVMFTSTL	RFAMFTSTL	NetMHCpan	178.7	256.5	1.435	142	0.063	481.912	652.274	1.354	561.34	295.31	256.5	178.7	743.2073569	668.5132201	1030.979429	800.2948092	PW3322T1	1.5	1.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.063	142	0	0	NA	3qD	chr3-15331914-159911278	2	1	1	0.66	2	NON-ABERRANT	1	0.190909091	sgMlh1	colon
chr1	173963979	173963979	CT	C	ENSMUST00000000266.8	1	ENSMUSG00000026535	FS	S/X	378	Ifi202b	ENSMUST00000000266.8:c.1132del	ENSMUSP00000000266.7:p.Ser378ValfsTer18	H-2-Kb	9	6	6	KVYRKVPEI	KVYRKSTGN	NetMHCpan	301.8	14074.5	46.635	142	0.049	456.859	4888.162	10.699	8296.84	371.58	14074.5	301.8	1479.483071	542.1381881	1309.935766	562.6651281	PW3322T1	-0.871428571	-0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.059	142	0	0	NA	1qH3	chr1-6245696-193241229	2	2	0	0.66	2	NON-ABERRANT	1	0.178787879	sgMlh1	colon
chr5	98872407	98872407	GT	G	ENSMUST00000200388.1	1	ENSMUSG00000029335	FS	F/X	230	Bmp3	ENSMUST00000200388.1:c.692del	ENSMUSP00000142907.1:p.Phe231SerfsTer122	H-2-Kb	9	98	0	IRAFRLSPL	NA	SMM	243.843	NA	NA	149	0.383	349.087	NA	NA	NA	443.93	NA	755.9	NA	243.8428356	NA	254.2435828	PW3322T1	0.757142857	0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.397	149	0	0	NA	5qE3	chr5-3704467-150534477	2	1	1	0.66	2	NON-ABERRANT	1	0.601515152	sgMlh1	colon
chr2	48898564	48898564	TA	T	ENSMUST00000063886.3	1	ENSMUSG00000052155	FS	K/X	435	Acvr2a	ENSMUST00000063886.3:c.1310del	ENSMUSP00000067305.3:p.Lys437ArgfsTer5	H-2-Kb	9	8	6	VVHKKRGLF	VVHKKKRPV	SMM	417.936	621.026	1.486	155	0.135	493.429	698.682	1.416	685.74	546.05	4295.7	2279.7	621.0263106	417.9362099	711.6230389	440.8085403	PW3322T1	-1.328571429	-1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1355	155	0	0	NA	2qC1.1	chr2-4513773-181006567	2	1	1	0.66	2	NON-ABERRANT	1	0.410606061	sgMlh1	colon
chr14	105116967	105116967	GA	G	ENSMUST00000163499.1	1	ENSMUSG00000022119	FS	S/X	990	Rbm26	ENSMUST00000163499.1:c.2968del	ENSMUSP00000128197.1:p.Ser990HisfsTer9	H-2-Kb	9	4	8	EVGFFFFHL	EVGFFFFSL	SMMPMBEC	328.284	419.035	1.276	27	0.593	355.658	454.518	1.278	1022.43	727.94	478.4	380.1	430.63567	331.2150024	419.0347115	328.2842143	PW3322T1	1.628571429	1.685714286	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.579	27	0	0	NA	14qE2.3	chr14-3072210-123348696	2	1	1	0.66	2	NON-ABERRANT	1	1	sgMlh1	colon
chr14	105116967	105116967	GA	G	ENSMUST00000163499.1	1	ENSMUSG00000022119	FS	S/X	990	Rbm26	ENSMUST00000163499.1:c.2968del	ENSMUSP00000128197.1:p.Ser990HisfsTer9	H-2-Kb	10	5	7	VGFFFFHLFS	VGFFFFSLVF	NetMHCpan	156.9	38.1	0.243	27	0.593	479.69	352.67	0.735	41.81	253.29	38.1	156.9	960.1299121	824.7645769	663.5291394	706.0899011	PW3322T1	1.571428571	2.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.579	27	0	0	NA	14qE2.3	chr14-3072210-123348696	2	1	1	0.66	2	NON-ABERRANT	1	1	sgMlh1	colon
chr9	80136750	80136750	GA	G	ENSMUST00000165607.8	1	ENSMUSG00000034252	FS	K/X	888	Senp6	ENSMUST00000165607.8:c.2672del	ENSMUSP00000126777.2:p.Asn891IlefsTer44	H-2-Db	9	42	0	ASGMNASVL	NA	NetMHC	36.8	NA	NA	98	0.122	141.593	NA	NA	NA	36.8	NA	75.9	NA	216.0827011	NA	207.2860138	PW3322T1	1	1	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1224	98	0	0	NA	9qE1	chr9-7282188-124127224	2	1	1	0.66	2	NON-ABERRANT	1	0.370909091	sgMlh1	colon
chr8	67758244	67758244	AT	A	ENSMUST00000098696.9	1	ENSMUSG00000030465	FS	K/X	703	Psd3	ENSMUST00000098696.9:c.2109del	ENSMUSP00000096293.3:p.Lys703AsnfsTer73	H-2-Kb	8	46	0	RMLLYTKV	NA	NetMHCpan	135.1	NA	NA	21	0.381	265.171	NA	NA	NA	177.37	NA	135.1	NA	376.4783444	NA	352.9717922	PW3322T1	1.114285714	1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.381	21	0	0	NA	8qB3.2	chr8-3583685-128713399	2	1	1	0.66	2	NON-ABERRANT	1	1	sgMlh1	colon
chr8	67758244	67758244	AT	A	ENSMUST00000098696.9	1	ENSMUSG00000030465	FS	K/X	703	Psd3	ENSMUST00000098696.9:c.2109del	ENSMUSP00000096293.3:p.Lys703AsnfsTer73	H-2-Kb	8	40	0	WTFLMTRM	NA	SMMPMBEC	168.167	NA	NA	21	0.381	205.831	NA	NA	NA	193.52	NA	267.8	NA	218.1423563	NA	168.1666993	PW3322T1	0.642857143	0.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.381	21	0	0	NA	8qB3.2	chr8-3583685-128713399	2	1	1	0.66	2	NON-ABERRANT	1	1	sgMlh1	colon
chr9	53375205	53375205	CA	C	ENSMUST00000051014.1	1	ENSMUSG00000034584	FS	S/X	1195	Exph5	ENSMUST00000051014.1:c.3592del	ENSMUSP00000062632.1:p.Thr1198LeufsTer36	H-2-Kb	8	38	0	ACFLFLAM	NA	SMMPMBEC	120.431	NA	NA	133	0.331	161.43	NA	NA	NA	311.22	NA	158.9	NA	163.9607892	NA	120.4314735	PW3322T1	2.771428571	2.771428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.318	133	0	0	NA	9qA5.3	chr9-7282188-124127224	2	1	1	0.66	2	NON-ABERRANT	1	0.963636364	sgMlh1	colon
chr9	53375205	53375205	CA	C	ENSMUST00000051014.1	1	ENSMUSG00000034584	FS	S/X	1195	Exph5	ENSMUST00000051014.1:c.3592del	ENSMUSP00000062632.1:p.Thr1198LeufsTer36	H-2-Kb	8	27	0	VGEHYISL	NA	SMMPMBEC	106.106	NA	NA	133	0.331	157.052	NA	NA	NA	324.12	NA	165.6	NA	148.504632	NA	106.106014	PW3322T1	-0.128571429	-0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.318	133	0	0	NA	9qA5.3	chr9-7282188-124127224	2	1	1	0.66	2	NON-ABERRANT	1	0.963636364	sgMlh1	colon
chr9	18815485	18815485	T	G	ENSMUST00000215380.2	3	ENSMUSG00000078116	missense	N/H	270	Olfr828	ENSMUST00000215380.2:c.808A>C	ENSMUSP00000148853.1:p.Asn270His	H-2-Kb	8	10	2	THTAFAYV	TNTAFAYV	SMM	247.594	85.652	0.346	214	0.047	329.843	96.124	0.291	47.13	365.42	106.7	556.8	85.65249141	247.5939338	106.5957771	294.2659418	PW3322T1	0.771428571	0.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.054	214	0	0	NA	9qA2	chr9-7282188-124127224	2	1	1	0.66	2	NON-ABERRANT	1	0.163636364	sgMlh1	colon
chr7	144595545	144595545	C	T	ENSMUST00000121758.7	1	ENSMUSG00000031075	missense	G/S	860	Ano1	ENSMUST00000121758.7:c.2578G>A	ENSMUSP00000112616.2:p.Gly860Ser	H-2-Kb	8	10	2	HSFVNHTL	HGFVNHTL	SMMPMBEC	309.557	898.959	2.904	134	0.06	473.346	1290.137	2.726	4398.97	1145.84	1304.6	518.4	1275.674869	428.2920371	898.9592386	309.5565516	PW3322T1	0.371428571	0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.063	134	0	0	NA	7qF5	NA	NA	NA	NA	0.66	2	NON-ABERRANT	NA	NA	sgMlh1	colon
chr8	67758244	67758244	AT	A	ENSMUST00000098696.9	1	ENSMUSG00000030465	FS	K/X	703	Psd3	ENSMUST00000098696.9:c.2109del	ENSMUSP00000096293.3:p.Lys703AsnfsTer73	H-2-Kb	8	36	0	RTHFWTFL	NA	NetMHCpan	146.7	NA	NA	21	0.381	322.844	NA	NA	NA	1245.75	NA	146.7	NA	347.3281635	NA	298.3595888	PW3322T1	0.557142857	0.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.381	21	0	0	NA	8qB3.2	chr8-3583685-128713399	2	1	1	0.66	2	NON-ABERRANT	1	1	sgMlh1	colon
chr9	18815485	18815485	T	G	ENSMUST00000215380.2	3	ENSMUSG00000078116	missense	N/H	270	Olfr828	ENSMUST00000215380.2:c.808A>C	ENSMUSP00000148853.1:p.Asn270His	H-2-Kb	9	9	3	VTHTAFAYV	VTNTAFAYV	NetMHC	30.61	75.48	2.466	214	0.047	191.504	402.345	2.101	75.48	30.61	251.2	62.3	553.4902819	320.7081525	575.7712826	350.1466697	PW3322T1	0.771428571	0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.054	214	0	0	NA	9qA2	chr9-7282188-124127224	2	1	1	0.66	2	NON-ABERRANT	1	0.163636364	sgMlh1	colon
chr9	40075149	40075149	A	G	ENSMUST00000054051.4	NA	ENSMUSG00000049010	missense	T/A	285	Olfr982	ENSMUST00000054051.4:c.853A>G	ENSMUSP00000052705.3:p.Thr285Ala	H-2-Kb	9	5	7	VFYTIVAPM	VFYTIVTPM	NetMHC	61.04	136.83	2.242	72	0.264	103.299	152.21	1.473	136.83	61.04	114	83.5	173.4243199	129.7507868	167.5907328	123.0977174	PW3322T1	1.257142857	2.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.258	72	0	0	NA	9qA5.1	chr9-7282188-124127224	2	1	1	0.66	2	NON-ABERRANT	1	0.781818182	sgMlh1	colon
chr9	80136750	80136750	GA	G	ENSMUST00000165607.8	1	ENSMUSG00000034252	FS	K/X	888	Senp6	ENSMUST00000165607.8:c.2672del	ENSMUSP00000126777.2:p.Asn891IlefsTer44	H-2-Kb	9	47	0	ASVLYIIQM	NA	NetMHC	227.71	NA	NA	98	0.122	259.534	NA	NA	NA	227.71	NA	259.5	NA	350.0338139	NA	259.5673122	PW3322T1	2.014285714	2.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1224	98	0	0	NA	9qE1	chr9-7282188-124127224	2	1	1	0.66	2	NON-ABERRANT	1	0.370909091	sgMlh1	colon
chr8	67758244	67758244	AT	A	ENSMUST00000098696.9	1	ENSMUSG00000030465	FS	K/X	703	Psd3	ENSMUST00000098696.9:c.2109del	ENSMUSP00000096293.3:p.Lys703AsnfsTer73	H-2-Kb	9	40	0	WTFLMTRML	NA	NetMHC	234.98	NA	NA	21	0.381	426.185	NA	NA	NA	234.98	NA	474.6	NA	407.4834739	NA	444.8872915	PW3322T1	1.285714286	1.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.381	21	0	0	NA	8qB3.2	chr8-3583685-128713399	2	1	1	0.66	2	NON-ABERRANT	1	1	sgMlh1	colon
chr9	53375205	53375205	CA	C	ENSMUST00000051014.1	1	ENSMUSG00000034584	FS	S/X	1195	Exph5	ENSMUST00000051014.1:c.3592del	ENSMUSP00000062632.1:p.Thr1198LeufsTer36	H-2-Kb	9	26	0	RVGEHYISL	NA	NetMHCpan	232.8	NA	NA	133	0.331	284.522	NA	NA	NA	281.8	NA	232.8	NA	291.1454451	NA	287.2433612	PW3322T1	-0.128571429	-0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.318	133	0	0	NA	9qA5.3	chr9-7282188-124127224	2	1	1	0.66	2	NON-ABERRANT	1	0.963636364	sgMlh1	colon
chr7	18682448	18682448	A	C	ENSMUST00000076677.3	5	ENSMUSG00000063305	missense	F/V	248	Psg20	ENSMUST00000076677.3:c.742T>G	ENSMUSP00000075973.3:p.Phe248Val	H-2-Kb	9	8	4	VNGVREMEL	VNGFREMEL	SMM	148.289	155.636	1.05	412	0.051	287.3	224.624	0.782	291.76	396.67	1102.8	1685.5	155.6359783	148.2893631	157.4889183	177.9303365	PW3322T1	-0.285714286	-0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.054	412	0	0	NA	7qA3	chr7-4131227-143497059	2	1	1	0.66	2	NON-ABERRANT	1	0.163636364	sgMlh1	colon
chr2	86171377	86171377	C	T	ENSMUST00000215171.1	5	ENSMUSG00000075200	missense	A/T	147	Olfr1044	ENSMUST00000215171.1:c.439G>A	ENSMUSP00000150199.1:p.Ala147Thr	H-2-Kb	8	11	1	TPYSYSFL	APYSYSFL	SMM	14.546	18.354	1.262	191	0.058	18.521	22.057	1.191	22.45	20.03	98.2	100.6	18.35439188	14.54587999	21.66406749	17.01139779	PW3322T2	0.114285714	0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.057	191	0	0	NA	2qD	chr2-4930918-181684255	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.167647059	sgMlh1	colon
chr3	54370837	54370837	G	A	ENSMUST00000073012.12	1	ENSMUSG00000027750	missense	A/T	256	Postn	ENSMUST00000073012.12:c.766G>A	ENSMUSP00000072773.6:p.Ala256Thr	H-2-Kb	8	5	7	SSFRAATI	SSFRAAAI	NetMHC	25.8	15.56	0.603	117	0.137	59.729	38.927	0.652	15.56	25.8	31	41.7	46.85328006	77.93633877	49.40148455	77.75709016	PW3322T2	0.7	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.14	117	0	0	NA	3qC	chr3-3642831-159911278	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.411764706	sgMlh1	colon
chr1	9724824	9724824	AT	A	ENSMUST00000057438.6	1	ENSMUSG00000045210	FS	K/X	1107	Vcpip1	ENSMUST00000057438.6:c.3321del	ENSMUSP00000051248.6:p.Lys1107AsnfsTer37	H-2-Kb	8	14	0	KWFLLFRL	NA	SMMPMBEC	112.135	NA	NA	143	0.035	125.342	NA	NA	NA	123.41	NA	192	NA	127.2740898	NA	112.1346934	PW3322T2	1.657142857	1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.044	143	0	0	NA	1qA2	chr1-6245696-193129618	2	2	0	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.129411765	sgMlh1	colon
chr18	34312304	34312304	CA	C	ENSMUST00000079362.12	1	ENSMUSG00000005871	FS	H/X	751	Apc	ENSMUST00000079362.12:c.2252del	ENSMUSP00000078337.5:p.His751ProfsTer8	H-2-Kb	8	5	7	SSLPSLPL	SSLPSLHV	NetMHC	157.01	1423.44	9.066	120	0.158	233.132	1461.114	6.267	1423.44	157.01	1883.3	313.3	1015.640475	185.2422298	1498.787285	281.0217928	PW3322T2	0.942857143	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1583	120	0	0	NA	18qB1	chr18-3281580-88974479	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.465588235	sgMlh1	colon
chr1	52799292	52799292	T	C	ENSMUST00000027271.8	1	ENSMUSG00000026102	missense	E/G	66	Inpp1	ENSMUST00000027271.8:c.197A>G	ENSMUSP00000027271.2:p.Glu66Gly	H-2-Kb	8	10	2	MGNKFPGL	MENKFPGL	SMM	106.842	471.781	4.416	117	0.034	139.382	2856.48	20.494	6845.09	160.53	5208.6	179.1	471.7805149	106.8415057	504.3592613	118.2333514	PW3322T2	-0.457142857	-0.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.039	117	0	0	NA	1qC1.1	chr1-6245696-193129618	2	2	0	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.114705882	sgMlh1	colon
chr2	86508758	86508758	C	A	ENSMUST00000076263.1	NA	ENSMUSG00000060742	missense	Q/K	100	Olfr1076	ENSMUST00000076263.1:c.298C>A	ENSMUSP00000075612.1:p.Gln100Lys	H-2-Kb	8	10	2	VKLSFFSM	VQLSFFSM	SMM	144.125	73.916	0.513	244	0.037	161.217	51.458	0.319	24.12	164.04	29	203.2	73.91626265	144.1252256	77.39982879	158.3944645	PW3322T2	0.828571429	1.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.04	244	0	0	NA	2qD	chr2-4930918-181684255	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.117647059	sgMlh1	colon
chr2	153399446	153399446	AG	A	ENSMUST00000109790.1	5	ENSMUSG00000042548	FS	G/X	640	Asxl1	ENSMUST00000109790.1:c.1925del	ENSMUSP00000105413.1:p.Gly642ValfsTer58	H-2-Kb	8	33	0	VVMVVRPV	NA	NetMHC	253.25	NA	NA	58	0.138	329.794	NA	NA	NA	253.25	NA	280.5	NA	467.4552051	NA	379.0879676	PW3322T2	1.8	1.8	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1379	58	0	0	NA	2qH1	chr2-4930918-181684255	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.405588235	sgMlh1	colon
chr2	130730834	130730834	G	A	ENSMUST00000044766.14	1	ENSMUSG00000027309	missense	A/V	857	4930402H24Rik	ENSMUST00000044766.14:c.2570C>T	ENSMUSP00000046992.8:p.Ala857Val	H-2-Kb	8	4	8	RSYFTIGV	RSYFTIGA	NetMHCpan	107	671.6	6.277	124	0.081	306.986	1856.006	6.046	3902.58	274.55	671.6	107	2026.469166	339.4220093	1685.543635	350.5419514	PW3322T2	1.185714286	1.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.086	124	0	0	NA	2qF1	chr2-4930918-181684255	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.252941176	sgMlh1	colon
chr2	153399446	153399446	AG	A	ENSMUST00000109790.1	5	ENSMUSG00000042548	FS	G/X	640	Asxl1	ENSMUST00000109790.1:c.1925del	ENSMUSP00000105413.1:p.Gly642ValfsTer58	H-2-Kb	8	36	0	VVRPVATL	NA	SMM	210.737	NA	NA	58	0.138	296.367	NA	NA	NA	295.06	NA	306	NA	210.7366151	NA	297.6733808	PW3322T2	1.028571429	1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1379	58	0	0	NA	2qH1	chr2-4930918-181684255	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.405588235	sgMlh1	colon
chr14	105892963	105892963	CA	C	ENSMUST00000022709.5	1	ENSMUSG00000022114	FS	L/X	263	Spry2	ENSMUST00000022709.5:c.788del	ENSMUSP00000022709.4:p.Leu263CysfsTer24	H-2-Kb	8	6	6	VMSLFCLV	VMSLFLPC	NetMHCpan	205	1511.7	7.374	211	0.038	338.488	1226.513	3.624	2969.32	303.09	1511.7	205	784.7656766	373.8866857	941.3258822	420.4748265	PW3322T2	2.6	2.6	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.04	211	0	0	NA	14qE2.3	chr14-3072210-123592557	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.117647059	sgMlh1	colon
chr19	13827796	13827796	A	T	ENSMUST00000214475.1	5	ENSMUSG00000054526	missense	I/N	200	Olfr1500	ENSMUST00000214475.1:c.599T>A	ENSMUSP00000151165.1:p.Ile200Asn	H-2-Kb	8	9	3	VINVFAIF	VIIVFAIF	SMMPMBEC	285.588	122.107	0.428	200	0.05	307.414	130.35	0.424	51.06	331.9	174.6	314.4	138.5925865	300.4277187	122.1068422	285.5880296	PW3322T2	2.442857143	2.642857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.055	200	0	0	NA	19qA	chr19-3279444-59322783	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.161764706	sgMlh1	colon
chr10	21395712	21395712	A	T	ENSMUST00000042699.13	1	ENSMUSG00000037542	missense	N/Y	446	Aldh8a1	ENSMUST00000042699.13:c.1336A>T	ENSMUSP00000038878.7:p.Asn446Tyr	H-2-Kb	8	7	5	LVWTYCWL	LVWTNCWL	SMMPMBEC	90.519	1777.215	19.634	113	0.053	168.431	2772.595	16.461	7978.67	359.66	2722	209	2823.189304	127.8615603	1777.215122	90.51905263	PW3322T2	0.957142857	0.957142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.068	113	0	0	NA	10qA3	chr10-5218416-128943022	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.2	sgMlh1	colon
chr15	101202988	101202988	GA	G	ENSMUST00000000544.11	1	ENSMUSG00000000532	FS	K/X	344	Acvr1b	ENSMUST00000000544.11:c.1037del	ENSMUSP00000000544.9:p.Asn346MetfsTer22	H-2-Kb	8	24	0	LSVMMRSL	NA	NetMHCpan	266.6	NA	NA	76	0.25	394.323	NA	NA	NA	389.86	NA	266.6	NA	593.9364789	NA	398.7860888	PW3322T2	0.814285714	0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.25	76	0	0	NA	15qF1	chr15-4091145-103525164	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.735294118	sgMlh1	colon
chr2	86508758	86508758	C	A	ENSMUST00000076263.1	NA	ENSMUSG00000060742	missense	Q/K	100	Olfr1076	ENSMUST00000076263.1:c.298C>A	ENSMUSP00000075612.1:p.Gln100Lys	H-2-Kb	8	5	7	IYFCAVKL	IYFCAVQL	NetMHCpan	182.6	166.5	0.912	244	0.037	419.059	250.809	0.599	332.13	472.92	166.5	182.6	256.2949211	424.3654321	245.323979	413.7518989	PW3322T2	1.414285714	1.514285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.04	244	0	0	NA	2qD	chr2-4930918-181684255	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.117647059	sgMlh1	colon
chr2	89630481	89630481	C	T	ENSMUST00000216124.2	5	ENSMUSG00000075079	missense	C/Y	139	Olfr1249	ENSMUST00000216124.2:c.416G>A	ENSMUSP00000149072.1:p.Cys139Tyr	H-2-Kb	8	9	3	RVYILFLV	RVCILFLV	SMM	369.607	4352.512	11.776	328	0.104	425.715	5834.556	13.705	11647.06	549.6	7316.6	456.3	4352.512229	369.6068402	3933.145385	395.1299959	PW3322T2	3.142857143	3.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.105	328	0	0	NA	2qE1	chr2-4930918-181684255	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.308823529	sgMlh1	colon
chr11	61715085	61715085	G	A	ENSMUST00000051552.10	1	ENSMUSG00000042371	missense	T/M	135	Slc5a10	ENSMUST00000051552.10:c.404C>T	ENSMUSP00000054407.4:p.Thr135Met	H-2-Kb	8	8	4	RIRMYLSV	RIRTYLSV	SMM	379.088	326.392	0.861	181	0.05	462.156	510.563	1.105	621.42	553.47	671.2	535.5	326.3923717	379.0879676	399.7053856	388.8123042	PW3322T2	1.114285714	1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.051	181	0	0	NA	11qB2	chr11-3133205-120861039	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.15	sgMlh1	colon
chr2	89630481	89630481	C	T	ENSMUST00000216124.2	5	ENSMUSG00000075079	missense	C/Y	139	Olfr1249	ENSMUST00000216124.2:c.416G>A	ENSMUSP00000149072.1:p.Cys139Tyr	H-2-Kb	8	10	2	VYILFLVM	VCILFLVM	SMM	361.194	497.439	1.377	328	0.104	442.879	732.57	1.654	2096.75	664.39	967.7	515.3	497.4391928	361.1935614	374.7485835	370.458872	PW3322T2	2.814285714	3.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.105	328	0	0	NA	2qE1	chr2-4930918-181684255	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.308823529	sgMlh1	colon
chr18	62520780	62520780	C	T	ENSMUST00000048688.7	1	ENSMUSG00000042211	missense	C/Y	437	Fbxo38	ENSMUST00000048688.7:c.1310G>A	ENSMUSP00000047541.6:p.Cys437Tyr	H-2-Kb	9	6	6	INLVRYHAL	INLVRCHAL	NetMHC	9.62	90.68	9.426	121	0.058	22.699	118.323	5.213	90.68	9.62	81.6	12.2	155.6359783	33.19785319	145.9654263	33.67053368	PW3322T2	0.657142857	0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.062	121	0	0	NA	18qE1	chr18-3281580-88974479	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.182352941	sgMlh1	colon
chr2	135967952	135967952	G	A	ENSMUST00000110109.7	1	ENSMUSG00000039943	missense	E/K	597	Plcb4	ENSMUST00000110109.7:c.1789G>A	ENSMUSP00000105736.1:p.Glu597Lys	H-2-Kb	9	7	5	SSFNKSVGL	SSFNESVGL	NetMHCpan	32.8	110.8	3.378	261	0.027	61.985	188.743	3.045	160.16	40.58	110.8	32.8	217.325156	83.38923698	285.9235978	96.21659863	PW3322T2	0.314285714	0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.026	261	0	0	NA	2qF3	chr2-4930918-181684255	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.076470588	sgMlh1	colon
chr2	86171377	86171377	C	T	ENSMUST00000215171.1	5	ENSMUSG00000075200	missense	A/T	147	Olfr1044	ENSMUST00000215171.1:c.439G>A	ENSMUSP00000150199.1:p.Ala147Thr	H-2-Kb	9	10	2	ATPYSYSFL	AAPYSYSFL	NetMHC	56.97	52.26	0.917	191	0.058	292.952	208.775	0.713	52.26	56.97	79.4	120.2	338.1504736	465.7040341	414.2380608	534.872168	PW3322T2	0.114285714	0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.057	191	0	0	NA	2qD	chr2-4930918-181684255	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.167647059	sgMlh1	colon
chr2	86508758	86508758	C	A	ENSMUST00000076263.1	NA	ENSMUSG00000060742	missense	Q/K	100	Olfr1076	ENSMUST00000076263.1:c.298C>A	ENSMUSP00000075612.1:p.Gln100Lys	H-2-Kb	9	10	2	VKLSFFSMF	VQLSFFSMF	SMM	84.744	56.769	0.67	244	0.037	113.949	49.634	0.436	33.45	102.8	42.5	214.6	56.76883738	84.74420308	86.54659777	125.0978944	PW3322T2	1.785714286	1.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.04	244	0	0	NA	2qD	chr2-4930918-181684255	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.117647059	sgMlh1	colon
chr14	105892963	105892963	CA	C	ENSMUST00000022709.5	1	ENSMUSG00000022114	FS	L/X	263	Spry2	ENSMUST00000022709.5:c.788del	ENSMUSP00000022709.4:p.Leu263CysfsTer24	H-2-Kb	9	16	0	VTFQPRVAL	NA	NetMHCpan	111.3	NA	NA	211	0.038	194.126	NA	NA	NA	127.57	NA	111.3	NA	260.6813732	NA	276.216743	PW3322T2	0.428571429	0.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.04	211	0	0	NA	14qE2.3	chr14-3072210-123592557	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.117647059	sgMlh1	colon
chr12	114946021	114946021	A	T	ENSMUST00000195417.1	NA	ENSMUSG00000095859	missense	S/T	94	Ighv1-43	ENSMUST00000195417.1:c.280T>A	ENSMUSP00000142065.1:p.Ser94Thr	H-2-Kb	9	11	1	TSSTAYMQL	SSSTAYMQL	NetMHC	132.1	59.63	0.451	373	0.027	361.192	296.534	0.821	59.63	132.1	161.3	253.3	488.776143	642.8505207	431.7675507	469.0833305	PW3322T2	0.171428571	0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.032	373	0	0	NA	12qF2	chr12-3252726-118177671	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.094117647	sgMlh1	colon
chr2	86508758	86508758	C	A	ENSMUST00000076263.1	NA	ENSMUSG00000060742	missense	Q/K	100	Olfr1076	ENSMUST00000076263.1:c.298C>A	ENSMUSP00000075612.1:p.Gln100Lys	H-2-Kb	9	4	8	SIYFCAVKL	SIYFCAVQL	NetMHCpan	89.2	89	0.998	244	0.037	179.449	119.908	0.668	92.16	148.4	89	89.2	178.6940122	250.097874	147.6556263	210.4989821	PW3322T2	1.414285714	1.957142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.04	244	0	0	NA	2qD	chr2-4930918-181684255	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.117647059	sgMlh1	colon
chr11	61715085	61715085	G	A	ENSMUST00000051552.10	1	ENSMUSG00000042371	missense	T/M	135	Slc5a10	ENSMUST00000051552.10:c.404C>T	ENSMUSP00000054407.4:p.Thr135Met	H-2-Kb	9	10	2	RMYLSVLSL	RTYLSVLSL	NetMHCpan	100.8	138.4	1.373	181	0.05	212.749	454.968	2.139	280.27	188.3	138.4	100.8	629.6656471	237.1974414	662.5978159	291.9106903	PW3322T2	1.814285714	1.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.051	181	0	0	NA	11qB2	chr11-3133205-120861039	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.15	sgMlh1	colon
chr2	89630481	89630481	C	T	ENSMUST00000216124.2	5	ENSMUSG00000075079	missense	C/Y	139	Olfr1249	ENSMUST00000216124.2:c.416G>A	ENSMUSP00000149072.1:p.Cys139Tyr	H-2-Kb	9	4	8	IIMNRRVYI	IIMNRRVCI	NetMHC	264.47	1212.09	4.583	328	0.104	359.587	1020.121	2.837	1212.09	264.47	1363.8	393.9	828.1518951	457.2039776	482.2253089	325.2744865	PW3322T2	-0.457142857	0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.105	328	0	0	NA	2qE1	chr2-4930918-181684255	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.308823529	sgMlh1	colon
chr12	116233327	116233327	AT	A	ENSMUST00000039349.7	1	ENSMUSG00000042050	FS	N/X	470	Wdr60	ENSMUST00000039349.7:c.1409del	ENSMUSP00000047334.6:p.Asn470IlefsTer23	H-2-Kb	9	22	0	IMLRETFRL	NA	NetMHCpan	190.2	NA	NA	121	0.074	277.611	NA	NA	NA	273.96	NA	190.2	NA	281.2613131	NA	346.1385739	PW3322T2	-0.4	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0744	121	0	0	NA	12qF2	chr12-3252726-118177671	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.218823529	sgMlh1	colon
chr3	6620176	6620176	G	T	ENSMUST00000091364.3	1	ENSMUSG00000069118	missense	P/T	73	1700008P02Rik	ENSMUST00000091364.3:c.217C>A	ENSMUSP00000088923.2:p.Pro73Thr	H-2-Kb	9	8	4	ISMTCSSCL	ISMPCSSCL	NetMHC	281.34	452.94	1.61	100	0.04	361.141	450.9	1.249	452.94	281.34	525.4	429.4	448.8590645	385.5760057	446.9407979	336.7053368	PW3322T2	1.2	1.2	FALSE	FALSE	FALSE	2	FALSE	0	Mutect2;Strelka2;Vardict	3	0.054	100	0	0	NA	3qA1	chr3-3642831-159911278	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.158823529	sgMlh1	colon
chr11	61715085	61715085	G	A	ENSMUST00000051552.10	1	ENSMUSG00000042371	missense	T/M	135	Slc5a10	ENSMUST00000051552.10:c.404C>T	ENSMUSP00000054407.4:p.Thr135Met	H-2-Kb	9	8	4	RIRMYLSVL	RIRTYLSVL	NetMHCpan	301.3	364.6	1.21	181	0.05	406.888	485.829	1.194	390.56	331.55	364.6	301.3	582.2506741	485.4114317	581.0988286	482.2253089	PW3322T2	1.014285714	1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.051	181	0	0	NA	11qB2	chr11-3133205-120861039	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.15	sgMlh1	colon
chr1	9724824	9724824	AT	A	ENSMUST00000057438.6	1	ENSMUSG00000045210	FS	K/X	1107	Vcpip1	ENSMUST00000057438.6:c.3321del	ENSMUSP00000051248.6:p.Lys1107AsnfsTer37	H-2-Kb	9	10	2	KNCRKWFLL	NA	NetMHC	367.19	NA	NA	143	0.035	476.914	NA	NA	NA	367.19	NA	681.8	NA	543.3879457	NA	410.4403034	PW3322T2	0.514285714	0.514285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.044	143	0	0	NA	1qA2	chr1-6245696-193129618	2	2	0	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.129411765	sgMlh1	colon
chr11	77137612	77137613	CCT	C	ENSMUST00000108400.7	5	ENSMUSG00000050944	FS	RG/RX	433-434	Efcab5	ENSMUST00000108400.7:c.1299_1300del	ENSMUSP00000104037.1:p.Gly434ValfsTer68	H-2-Kb	9	57	0	VNFRTWATQ	NA	SMM	228.092	NA	NA	367	0.016	336.217	NA	NA	NA	427.95	NA	2753.9	NA	228.091972	NA	244.4837509	PW3322T2	-0.814285714	-0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.02	367	0	0	NA	11qB5	chr11-3133205-120861039	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.058823529	sgMlh1	colon
chr2	89630481	89630481	C	T	ENSMUST00000216124.2	5	ENSMUSG00000075079	missense	C/Y	139	Olfr1249	ENSMUST00000216124.2:c.416G>A	ENSMUSP00000149072.1:p.Cys139Tyr	H-2-Kb	9	5	7	IMNRRVYIL	IMNRRVCIL	SMM	331.979	376.799	1.135	328	0.104	400.924	487.62	1.216	598.44	453.31	720.5	550.4	376.7992242	331.9785319	358.3026333	348.5378918	PW3322T2	-0.185714286	-0.185714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.105	328	0	0	NA	2qE1	chr2-4930918-181684255	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.308823529	sgMlh1	colon
chr12	72486309	72486309	C	T	ENSMUST00000162159.7	1	ENSMUSG00000021090	missense	A/V	984	Lrrc9	ENSMUST00000162159.7:c.2951C>T	ENSMUSP00000124394.1:p.Ala984Val	H-2-Kb	9	10	2	SVLQKTFTL	SALQKTFTL	NetMHCpan	369.1	411.4	1.115	178	0.034	483.973	442.785	0.915	466.67	496.85	411.4	369.1	418.8996524	471.0966327	484.4511598	560.0799166	PW3322T2	0.228571429	0.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.035	178	0	0	NA	12qC3	chr12-3252726-118177671	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.102941176	sgMlh1	colon
chr2	89630481	89630481	C	T	ENSMUST00000216124.2	5	ENSMUSG00000075079	missense	C/Y	139	Olfr1249	ENSMUST00000216124.2:c.416G>A	ENSMUSP00000149072.1:p.Cys139Tyr	H-2-Kb	9	9	3	RVYILFLVM	RVCILFLVM	SMMPMBEC	179.164	1286.027	7.178	328	0.104	259.091	2884.496	11.133	6954.84	534.38	3610.7	328.9	2158.291001	189.282298	1286.026743	179.1636906	PW3322T2	2.814285714	3.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.105	328	0	0	NA	2qE1	chr2-4930918-181684255	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.308823529	sgMlh1	colon
chr2	48898564	48898564	TA	T	ENSMUST00000063886.3	1	ENSMUSG00000052155	FS	K/X	435	Acvr2a	ENSMUST00000063886.3:c.1310del	ENSMUSP00000067305.3:p.Lys437ArgfsTer5	H-2-Kb	9	8	6	VVHKKRGLF	VVHKKKRPV	SMM	417.936	621.026	1.486	172	0.128	493.429	698.682	1.416	685.74	546.05	4295.7	2279.7	621.0263106	417.9362099	711.6230389	440.8085403	PW3322T2	-1.328571429	-1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1279	172	0	0	NA	2qC1.1	chr2-4930918-181684255	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.376176471	sgMlh1	colon
chr2	86508758	86508758	C	A	ENSMUST00000076263.1	NA	ENSMUSG00000060742	missense	Q/K	100	Olfr1076	ENSMUST00000076263.1:c.298C>A	ENSMUSP00000075612.1:p.Gln100Lys	H-2-Kb	10	3	9	ISIYFCAVKL	ISIYFCAVQL	NetMHC	34.49	20.01	0.58	244	0.037	365.396	677.788	1.855	20.01	34.49	43.8	47.1	1771.454492	1205.951939	1311.776964	683.6912157	PW3322T2	1.414285714	2	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.04	244	0	0	NA	2qD	chr2-4930918-181684255	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.117647059	sgMlh1	colon
chrX	73899600	73899600	TG	T	ENSMUST00000064376.12	1	ENSMUSG00000031389	FS	H/X	506	Arhgap4	ENSMUST00000064376.12:c.1516del	ENSMUSP00000067477.6:p.His506IlefsTer80	H-2-Db	9	30	0	RAQANLCPL	NA	NetMHCpan	16.6	NA	NA	151	0.113	28.767	NA	NA	NA	27.71	NA	16.6	NA	39.95949582	NA	29.8242822	PW3322T2	0.471428571	0.471428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.113	151	0	0	NA	XqA7.3	chrX-7171112-169987923	2	2	0	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.332352941	sgMlh1	colon
chrX	112243508	112243508	A	G	ENSMUST00000152343.7	1	ENSMUSG00000079460	missense	M/V	324	4933403O08Rik	ENSMUST00000152343.7:c.970A>G	ENSMUSP00000121926.2:p.Met324Val	H-2-Db	9	3	9	QSNVNTIPV	QSNVNTIPM	NetMHC	50.24	22.65	0.451	215	0.033	96.794	44.566	0.46	22.65	50.24	60.9	110.1	34.48418767	83.48722001	54.64746241	123.4724313	PW3322T2	0.514285714	0.514285714	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.04	215	0	0	NA	XqE1	chrX-7171112-169987923	2	2	0	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.117647059	sgMlh1	colon
chrX	106238458	106238458	GT	G	ENSMUST00000091282.4	1	ENSMUSG00000073012	FS	K/X	730	Fnd3c2	ENSMUST00000091282.4:c.2190del	ENSMUSP00000088827.4:p.Lys730AsnfsTer11	H-2-Db	9	7	5	SSKKNLTTL	SSKKKLDYF	NetMHC	57.34	13905.91	242.517	190	0.105	110.773	9763.626	88.141	13905.91	57.34	11444.3	149.7	7579.141233	103.9010652	8082.952004	117.6440589	PW3322T2	-0.728571429	-0.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1053	190	0	0	NA	XqD	chrX-7171112-169987923	2	2	0	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.309705882	sgMlh1	colon
chr7	45678685	45678685	C	T	ENSMUST00000040636.8	1	ENSMUSG00000040364	missense	V/I	313	Sec1	ENSMUST00000040636.8:c.937G>A	ENSMUSP00000045229.6:p.Val313Ile	H-2-Db	9	4	8	LMQCNHTII	LMQCNHTVI	NetMHCpan	183.9	106.4	0.579	106	0.085	256.217	145.37	0.567	67.49	212.09	106.4	183.9	184.3401769	300.3447189	198.8703326	360.2218066	PW3322T2	0.085714286	0.085714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.078	106	0	0	NA	7qB3	chr7-3683993-143497059	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.229411765	sgMlh1	colon
chr6	48991597	48991598	AGT	A	ENSMUST00000037696.5	1	ENSMUSG00000039215	FS	QC/QX	817-818	Svs1	ENSMUST00000037696.5:c.2458_2459del	ENSMUSP00000045221.4:p.Cys820LeufsTer?	H-2-Db	9	18	0	IAVYNNRSL	NA	SMM	302.427	NA	NA	140	0.114	448.149	NA	NA	NA	998.5	NA	499.5	NA	302.4266091	NA	396.7984801	PW3322T2	-0.8	-0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1143	140	0	0	NA	6qB2.3	chr6-4614616-147508000	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.336176471	sgMlh1	colon
chrX	21486522	21486522	A	AT	ENSMUST00000089188.8	1	ENSMUSG00000068122	FS	I/IX	132	Agtr2	ENSMUST00000089188.8:c.402dup	ENSMUSP00000086592.2:p.Ile135TyrfsTer8	H-2-Kb	8	9	6	ASIFFYYL	ASIFFITC	NetMHC	7.16	2524.56	352.592	310	0.077	9.18	748.528	81.541	2524.56	7.16	989.2	7.3	438.2682402	11.05961477	507.8553127	11.93273511	PW3322T2	1.5	1.5	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0774	310	0	0	NA	XqA2	chrX-7171112-169987923	2	2	0	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.227647059	sgMlh1	colon
chr7	110075704	110075704	GA	G	ENSMUST00000209505.1	1	ENSMUSG00000061079	FS	K/X	211	Zfp143	ENSMUST00000209505.1:c.637del	ENSMUSP00000147673.1:p.Met213CysfsTer12	H-2-Kb	8	15	0	LSYKAMLL	NA	NetMHC	16.59	NA	NA	190	0.084	62.452	NA	NA	NA	16.59	NA	28.8	NA	96.10367602	NA	107.0878008	PW3322T2	0.757142857	0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0842	190	0	0	NA	7qE3	chr7-3683993-143497059	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.247647059	sgMlh1	colon
chr5	37378253	37378253	CT	C	ENSMUST00000056365.8	1	ENSMUSG00000050248	FS	L/X	424	Evc2	ENSMUST00000056365.8:c.1272del	ENSMUSP00000055130.8:p.Thr425LeufsTer40	H-2-Kb	8	38	0	SIPRYRVL	NA	NetMHC	21.05	NA	NA	88	0.091	61.561	NA	NA	NA	21.05	NA	122.6	NA	53.17897962	NA	69.94231455	PW3322T2	0.085714286	0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.095	88	0	0	NA	5qB3	chr5-5457389-150758621	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.279411765	sgMlh1	colon
chrX	48877005	48877005	T	C	ENSMUST00000114928.1	1	ENSMUSG00000079606	missense	T/A	70	Fsip2l	ENSMUST00000114928.1:c.208A>G	ENSMUSP00000110578.1:p.Thr70Ala	H-2-Kb	8	6	6	SIFYTANI	SIFYTTNI	NetMHC	31.34	126.6	4.04	118	0.042	70.317	219.871	3.127	126.6	31.34	52.6	33.3	343.3523309	120.1544888	313.1410475	107.3346637	PW3322T2	1.157142857	1.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.053	118	0	0	NA	XqA5	chrX-7171112-169987923	2	2	0	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.155882353	sgMlh1	colon
chr7	6474875	6474875	CT	C	ENSMUST00000215302.2	5	ENSMUSG00000054938	FS	L/X	255	Olfr1346	ENSMUST00000215302.2:c.769del	ENSMUSP00000150503.2:p.Tyr257ThrfsTer41	H-2-Kb	8	8	6	VMGLFTLL	VMGLFYSV	NetMHC	38.61	99.96	2.589	114	0.053	57.423	171.938	2.994	99.96	38.61	170.6	41.1	181.861178	84.28300279	173.2766328	73.74625996	PW3322T2	2.142857143	2.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.062	114	0	0	NA	7qA1	chr7-3683993-143497059	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.182352941	sgMlh1	colon
chrX	102711222	102711222	TA	T	ENSMUST00000113609.7	1	ENSMUSG00000073027	FS	K/X	16	Dmrtc1b	ENSMUST00000113609.7:c.51del	ENSMUSP00000109239.1:p.Lys17AsnfsTer27	H-2-Kb	8	15	0	ASFRPTNV	NA	NetMHC	71.49	NA	NA	206	0.034	124.905	NA	NA	NA	71.49	NA	174.6	NA	117.1493815	NA	132.6600022	PW3322T2	-0.585714286	-0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.038	206	0	0	NA	XqD	chrX-7171112-169987923	2	2	0	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.111764706	sgMlh1	colon
chr9	39469817	39469817	CT	C	ENSMUST00000220176.1	5	ENSMUSG00000063176	FS	K/X	303	Olfr955	ENSMUST00000220176.1:c.908del	ENSMUSP00000151246.1:p.Lys303SerfsTer28	H-2-Kb	8	11	1	SYYKRCFL	NA	NetMHC	240.1	NA	NA	226	0.044	389.845	NA	NA	NA	240.1	NA	261.2	NA	518.4895408	NA	556.8522772	PW3322T2	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.048	226	0	0	NA	9qA5.1	chr9-3342997-124108155	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.141176471	sgMlh1	colon
chrX	102711222	102711222	TA	T	ENSMUST00000113609.7	1	ENSMUSG00000073027	FS	K/X	16	Dmrtc1b	ENSMUST00000113609.7:c.51del	ENSMUSP00000109239.1:p.Lys17AsnfsTer27	H-2-Kb	8	13	0	ISASFRPT	NA	SMMPMBEC	180.609	NA	NA	206	0.034	254.118	NA	NA	NA	275.03	NA	494.2	NA	233.2061504	NA	180.6092545	PW3322T2	-0.542857143	0.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.038	206	0	0	NA	XqD	chrX-7171112-169987923	2	2	0	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.111764706	sgMlh1	colon
chrX	73899600	73899600	TG	T	ENSMUST00000064376.12	1	ENSMUSG00000031389	FS	H/X	506	Arhgap4	ENSMUST00000064376.12:c.1516del	ENSMUSP00000067477.6:p.His506IlefsTer80	H-2-Kb	8	28	0	LSRAQANL	NA	SMM	101.097	NA	NA	151	0.113	218.632	NA	NA	NA	290.12	NA	800.3	NA	101.0974031	NA	147.1431334	PW3322T2	-0.7	-0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.113	151	0	0	NA	XqA7.3	chrX-7171112-169987923	2	2	0	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.332352941	sgMlh1	colon
chr5	37378253	37378253	CT	C	ENSMUST00000056365.8	1	ENSMUSG00000050248	FS	L/X	424	Evc2	ENSMUST00000056365.8:c.1272del	ENSMUSP00000055130.8:p.Thr425LeufsTer40	H-2-Kb	8	32	0	MNYTASSI	NA	NetMHCpan	84.1	NA	NA	88	0.091	315.777	NA	NA	NA	338.64	NA	84.1	NA	292.9139126	NA	351.3500341	PW3322T2	-0.114285714	-0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.095	88	0	0	NA	5qB3	chr5-5457389-150758621	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.279411765	sgMlh1	colon
chrX	134749618	134749618	T	C	ENSMUST00000113194.7	2	ENSMUSG00000050394	missense	K/E	155	Armcx6	ENSMUST00000113194.7:c.463A>G	ENSMUSP00000108819.1:p.Lys155Glu	H-2-Kb	8	9	3	ISEHLASL	ISKHLASL	SMMPMBEC	92.414	109.079	1.18	201	0.045	147.695	124.638	0.844	225.45	365.65	108.5	150.6	140.197413	144.7904774	109.0787117	92.41447486	PW3322T2	0.157142857	0.257142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.052	201	0	0	NA	XqE3	chrX-7171112-169987923	2	2	0	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.152941176	sgMlh1	colon
chrX	73899600	73899600	TG	T	ENSMUST00000064376.12	1	ENSMUSG00000031389	FS	H/X	506	Arhgap4	ENSMUST00000064376.12:c.1516del	ENSMUSP00000067477.6:p.His506IlefsTer80	H-2-Kb	8	16	0	IIRDFLEV	NA	NetMHCpan	230.8	NA	NA	151	0.113	323.944	NA	NA	NA	370.64	NA	230.8	NA	281.6696149	NA	366.2182643	PW3322T2	0.542857143	0.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.113	151	0	0	NA	XqA7.3	chrX-7171112-169987923	2	2	0	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.332352941	sgMlh1	colon
chr6	68930544	68930544	C	A	ENSMUST00000114212.3	NA	ENSMUSG00000079543	missense	M/I	24	Igkv13-85	ENSMUST00000114212.3:c.72G>T	ENSMUSP00000109850.3:p.Met24Ile	H-2-Kb	8	11	1	ITQSSSYL	MTQSSSYL	SMM	226.329	452.627	2	177	0.04	392.129	1299.579	3.314	1953.89	487.27	2162.5	796.3	452.6265239	226.3288934	645.2678095	296.9887511	PW3322T2	-0.585714286	-0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.049	177	0	0	NA	6qC1	chr6-4614616-147508000	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.144117647	sgMlh1	colon
chr6	48991597	48991598	AGT	A	ENSMUST00000037696.5	1	ENSMUSG00000039215	FS	QC/QX	817-818	Svs1	ENSMUST00000037696.5:c.2458_2459del	ENSMUSP00000045221.4:p.Cys820LeufsTer?	H-2-Kb	8	19	0	AVYNNRSL	NA	SMMPMBEC	213.177	NA	NA	140	0.114	279.061	NA	NA	NA	612.29	NA	323.3	NA	234.8226582	NA	213.1768301	PW3322T2	-0.8	-0.8	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1143	140	0	0	NA	6qB2.3	chr6-4614616-147508000	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.336176471	sgMlh1	colon
chr5	37378253	37378253	CT	C	ENSMUST00000056365.8	1	ENSMUSG00000050248	FS	L/X	424	Evc2	ENSMUST00000056365.8:c.1272del	ENSMUSP00000055130.8:p.Thr425LeufsTer40	H-2-Kb	9	37	0	SSIPRYRVL	NA	NetMHC	21.81	NA	NA	88	0.091	67.055	NA	NA	NA	21.81	NA	40.3	NA	99.10829389	NA	93.81018664	PW3322T2	0.085714286	0.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.095	88	0	0	NA	5qB3	chr5-5457389-150758621	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.279411765	sgMlh1	colon
chr9	39469817	39469817	CT	C	ENSMUST00000220176.1	5	ENSMUSG00000063176	FS	K/X	303	Olfr955	ENSMUST00000220176.1:c.908del	ENSMUSP00000151246.1:p.Lys303SerfsTer28	H-2-Kb	9	10	2	KSYYKRCFL	NA	NetMHC	49.56	NA	NA	226	0.044	116.698	NA	NA	NA	49.56	NA	73.4	NA	159.9963223	NA	186.3159349	PW3322T2	-0.271428571	-0.271428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.048	226	0	0	NA	9qA5.1	chr9-3342997-124108155	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.141176471	sgMlh1	colon
chrX	21486522	21486522	A	AT	ENSMUST00000089188.8	1	ENSMUSG00000068122	FS	I/IX	132	Agtr2	ENSMUST00000089188.8:c.402dup	ENSMUSP00000086592.2:p.Ile135TyrfsTer8	H-2-Kb	9	8	7	FASIFFYYL	FASIFFITC	NetMHC	96.54	5565.47	57.649	310	0.077	154.349	3955.146	25.625	5565.47	96.54	6610.1	127.1	2344.822647	181.5975563	1710.999962	221.9473684	PW3322T2	1.5	1.8	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0774	310	0	0	NA	XqA2	chrX-7171112-169987923	2	2	0	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.227647059	sgMlh1	colon
chr5	37378253	37378253	CT	C	ENSMUST00000056365.8	1	ENSMUSG00000050248	FS	L/X	424	Evc2	ENSMUST00000056365.8:c.1272del	ENSMUSP00000055130.8:p.Thr425LeufsTer40	H-2-Kb	9	24	0	GSWLFSRGM	NA	NetMHC	117.5	NA	NA	88	0.091	222.683	NA	NA	NA	117.5	NA	141.2	NA	304.1655332	NA	471.2485208	PW3322T2	0.271428571	0.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.095	88	0	0	NA	5qB3	chr5-5457389-150758621	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.279411765	sgMlh1	colon
chr9	44830428	44830428	CT	C	ENSMUST00000002095.10	5	ENSMUSG00000002028	FS	K/X	1748	Kmt2a	ENSMUST00000002095.10:c.5244del	ENSMUSP00000002095.3:p.Ala1749ProfsTer70	H-2-Kb	9	19	0	SSFGKWSEF	NA	SMM	64.731	NA	NA	252	0.103	81.271	NA	NA	NA	127.16	NA	93	NA	64.73065476	NA	69.54245209	PW3322T2	-0.557142857	-0.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.096	252	0	0	NA	9qA5.2	chr9-3342997-124108155	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.282352941	sgMlh1	colon
chr7	100938543	100938543	A	G	ENSMUST00000060174.5	1	ENSMUSG00000048779	missense	L/P	203	P2ry6	ENSMUST00000060174.5:c.608T>C	ENSMUSP00000055697.4:p.Leu203Pro	H-2-Kb	9	5	7	TVIGFLPPF	TVIGFLLPF	NetMHCpan	86.8	218.2	2.514	74	0.122	134.632	196.04	1.456	273.29	138.01	218.2	86.8	157.8010905	131.2532301	173.8801475	149.3653979	PW3322T2	1.471428571	1.8	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.095	74	0	0	NA	7qE2	chr7-3683993-143497059	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.279411765	sgMlh1	colon
chrX	48877005	48877005	T	C	ENSMUST00000114928.1	1	ENSMUSG00000079606	missense	T/A	70	Fsip2l	ENSMUST00000114928.1:c.208A>G	ENSMUSP00000110578.1:p.Thr70Ala	H-2-Kb	9	5	7	NSIFYTANI	NSIFYTTNI	NetMHCpan	80	133.8	1.673	118	0.042	478.169	771.897	1.614	533.96	214.6	133.8	80	1194.290561	893.5317727	1009.834026	741.7370966	PW3322T2	1.157142857	1.157142857	FALSE	FALSE	FALSE	0	TRUE	0	Mutect2;Strelka2;Vardict	3	0.053	118	0	0	NA	XqA5	chrX-7171112-169987923	2	2	0	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.155882353	sgMlh1	colon
chr7	6474875	6474875	CT	C	ENSMUST00000215302.2	5	ENSMUSG00000054938	FS	L/X	255	Olfr1346	ENSMUST00000215302.2:c.769del	ENSMUSP00000150503.2:p.Tyr257ThrfsTer41	H-2-Kb	9	7	7	LVMGLFTLL	LVMGLFYSV	NetMHCpan	129.1	700.3	5.424	114	0.053	191.959	685.285	3.57	848.7	232.14	700.3	129.1	619.5979897	189.7186388	670.270337	194.2003463	PW3322T2	2.142857143	2.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.062	114	0	0	NA	7qA1	chr7-3683993-143497059	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.182352941	sgMlh1	colon
chrX	21486522	21486522	A	AT	ENSMUST00000089188.8	1	ENSMUSG00000068122	FS	I/IX	132	Agtr2	ENSMUST00000089188.8:c.402dup	ENSMUSP00000086592.2:p.Ile135TyrfsTer8	H-2-Kb	9	10	5	SIFFYYLHE	NA	SMMPMBEC	47.561	NA	NA	310	0.077	169.033	NA	NA	NA	288.05	NA	539.9	NA	50.01612019	NA	47.56089297	PW3322T2	0.014285714	1.5	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0774	310	0	0	NA	XqA2	chrX-7171112-169987923	2	2	0	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.227647059	sgMlh1	colon
chrX	102711222	102711222	TA	T	ENSMUST00000113609.7	1	ENSMUSG00000073027	FS	K/X	16	Dmrtc1b	ENSMUST00000113609.7:c.51del	ENSMUSP00000109239.1:p.Lys17AsnfsTer27	H-2-Kb	9	24	0	VAIPSWNSM	NA	SMM	284.518	NA	NA	206	0.034	302.03	NA	NA	NA	300.46	NA	303.6	NA	284.5181656	NA	323.0353127	PW3322T2	-0.171428571	0.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.038	206	0	0	NA	XqD	chrX-7171112-169987923	2	2	0	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.111764706	sgMlh1	colon
chrX	73899600	73899600	TG	T	ENSMUST00000064376.12	1	ENSMUSG00000031389	FS	H/X	506	Arhgap4	ENSMUST00000064376.12:c.1516del	ENSMUSP00000067477.6:p.His506IlefsTer80	H-2-Kb	9	42	0	AVFASLISM	NA	NetMHCpan	336.8	NA	NA	151	0.113	497.259	NA	NA	NA	463.5	NA	336.8	NA	531.018926	NA	586.4756699	PW3322T2	1.885714286	2.585714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.113	151	0	0	NA	XqA7.3	chrX-7171112-169987923	2	2	0	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.332352941	sgMlh1	colon
chr14	49960656	49960656	T	C	ENSMUST00000213390.1	5	ENSMUSG00000096254	missense	R/G	139	Olfr724	ENSMUST00000213390.1:c.415A>G	ENSMUSP00000149110.1:p.Arg139Gly	H-2-Db	9	10	2	HGLLNRFII	HRLLNRFII	NetMHC	57.09	3969.7	69.534	137	0.066	109.494	2263.841	20.675	3969.7	57.09	4262.8	89.1	557.9817569	150.1827319	444.1912508	129.8882902	PW3325T1	1.628571429	1.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.067	137	0	0	NA	14qC1	chr14-3072210-123348696	2	1	1	0.54	2	NON-ABERRANT	1	0.248148148	sgMlh1	colon
chr10	78000809	78000809	C	T	ENSMUST00000020522.8	1	ENSMUSG00000020277	missense	A/T	154	Pfkl	ENSMUST00000020522.8:c.460G>A	ENSMUSP00000020522.8:p.Ala154Thr	H-2-Db	9	5	7	STAQNYTHL	STAQNYAHL	NetMHC	70.29	184.1	2.619	93	0.097	270.639	413.076	1.526	184.1	70.29	127.3	76.1	643.6058753	465.1788921	642.0516997	505.324087	PW3325T1	-0.942857143	-0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.103	93	0	0	NA	10qC1	chr10-5218416-130354778	2	1	1	0.54	2	NON-ABERRANT	1	0.381481481	sgMlh1	colon
chr19	18690332	18690332	GT	G	ENSMUST00000025632.10	1	ENSMUSG00000024726	FS	S/X	222	Carnmt1	ENSMUST00000025632.10:c.672del	ENSMUSP00000025632.9:p.Phe224LeufsTer59	H-2-Db	9	26	0	LKLTNINFI	NA	NetMHC	171.17	NA	NA	53	0.113	488.032	NA	NA	NA	171.17	NA	510.8	NA	507.7150065	NA	468.3494343	PW3325T1	1.128571429	1.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.116	53	0	0	NA	19qB	chr19-3279476-59060521	2	1	1	0.54	2	NON-ABERRANT	1	0.42962963	sgMlh1	colon
chr10	93525946	93525946	C	T	ENSMUST00000016034.2	1	ENSMUSG00000015890	missense	A/T	365	Amdhd1	ENSMUST00000016034.2:c.1093G>A	ENSMUSP00000016034.2:p.Ala365Thr	H-2-Db	9	11	1	TATINAAYA	AATINAAYA	NetMHC	212.36	89.96	0.424	46	0.196	274.902	160.03	0.582	89.96	212.36	170.5	305.1	151.5723556	280.2980007	168.4883976	269.5069691	PW3325T1	0.628571429	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.208	46	0	0	NA	10qC2	chr10-5218416-130354778	2	1	1	0.54	2	NON-ABERRANT	1	0.77037037	sgMlh1	colon
chr19	18690332	18690332	GT	G	ENSMUST00000025632.10	1	ENSMUSG00000024726	FS	S/X	222	Carnmt1	ENSMUST00000025632.10:c.672del	ENSMUSP00000025632.9:p.Phe224LeufsTer59	H-2-Db	9	54	0	FSLMLTPTV	NA	NetMHC	216.81	NA	NA	53	0.113	301.628	NA	NA	NA	216.81	NA	469.2	NA	270.1593483	NA	333.0964468	PW3325T1	1.528571429	1.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.116	53	0	0	NA	19qB	chr19-3279476-59060521	2	1	1	0.54	2	NON-ABERRANT	1	0.42962963	sgMlh1	colon
chr2	104471431	104471431	C	T	ENSMUST00000028600.13	1	ENSMUSG00000027177	missense	G/S	139	Hipk3	ENSMUST00000028600.13:c.415G>A	ENSMUSP00000028600.7:p.Gly139Ser	H-2-Db	9	11	1	SAMQIVDEL	GAMQIVDEL	NetMHCpan	47.8	288.1	6.027	105	0.524	386.209	1316.994	3.41	1251.79	245.65	288.1	47.8	1568.989366	526.7687464	1382.197172	599.1975101	PW3325T1	0.557142857	0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.484	105	0	0	NA	2qE2	chr2-4992200-181815659	2	1	1	0.54	2	NON-ABERRANT	1	0.896296296	sgMlh1	colon
chr4	116095813	116095813	G	A	ENSMUST00000030471.8	1	ENSMUSG00000028703	missense	R/H	676	Lrrc41	ENSMUST00000030471.8:c.2027G>A	ENSMUSP00000030471.8:p.Arg676His	H-2-Kb	8	5	7	ITFSFCHL	ITFSFCRL	SMMPMBEC	1.541	1.218	0.791	99	0.414	2.069	1.941	0.938	2.69	2.48	2.6	2.5	1.281563117	1.658593656	1.218260042	1.540777756	PW3325T1	1.028571429	1.128571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.407	99	0	0	NA	4qD1	chr4-6204537-155750465	2	1	1	0.54	2	NON-ABERRANT	1	0.753703704	sgMlh1	colon
chr5	109292753	109292753	T	C	ENSMUST00000167133.2	5	ENSMUSG00000091375	missense	H/R	413	Vmn2r15	ENSMUST00000167133.2:c.1238A>G	ENSMUSP00000128333.1:p.His413Arg	H-2-Kb	8	6	6	VAHTYREL	VAHTYHEL	NetMHC	16.62	29.17	1.755	318	0.031	52.098	50.164	0.963	29.17	16.62	29.9	40.7	70.42713151	63.49506908	72.73442335	64.52678095	PW3325T1	-1.085714286	-1.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.032	318	0	0	NA	5qF	chr5-8064510-150513023	2	2	0	0.54	2	NON-ABERRANT	1	0.118518519	sgMlh1	colon
chr10	78000809	78000809	C	T	ENSMUST00000020522.8	1	ENSMUSG00000020277	missense	A/T	154	Pfkl	ENSMUST00000020522.8:c.460G>A	ENSMUSP00000020522.8:p.Ala154Thr	H-2-Kb	8	6	6	TAQNYTHL	TAQNYAHL	NetMHC	26.99	8.53	0.316	93	0.097	90.973	31.71	0.349	8.53	26.99	43.1	95.5	30.25101842	86.44502416	33.16958211	96.76983488	PW3325T1	-0.942857143	-0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.103	93	0	0	NA	10qC1	chr10-5218416-130354778	2	1	1	0.54	2	NON-ABERRANT	1	0.381481481	sgMlh1	colon
chr14	49960656	49960656	T	C	ENSMUST00000213390.1	5	ENSMUSG00000096254	missense	R/G	139	Olfr724	ENSMUST00000213390.1:c.415A>G	ENSMUSP00000149110.1:p.Arg139Gly	H-2-Kb	8	6	6	IIMSHGLL	IIMSHRLL	NetMHC	35.1	31.31	0.892	137	0.066	72.932	72.882	0.999	31.31	35.1	63.4	63.5	89.27708467	95.66211974	82.36448742	82.36448742	PW3325T1	1.371428571	1.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.067	137	0	0	NA	14qC1	chr14-3072210-123348696	2	1	1	0.54	2	NON-ABERRANT	1	0.248148148	sgMlh1	colon
chr1	190161834	190161834	TG	T	ENSMUST00000175916.7	1	ENSMUSG00000010175	FS	P/X	138	Prox1	ENSMUST00000175916.7:c.413del	ENSMUSP00000135703.1:p.Pro138GlnfsTer12	H-2-Kb	8	13	0	VFPLLAGL	NA	NetMHC	46.62	NA	NA	98	0.051	91.694	NA	NA	NA	46.62	NA	187.4	NA	79.93555598	NA	103.4522641	PW3325T1	2	2.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.065	98	0	0	NA	1qH6	chr1-6245696-191013439	2	2	0	0.54	2	NON-ABERRANT	1	0.240740741	sgMlh1	colon
chr13	3575900	3575900	AT	A	ENSMUST00000096069.4	1	ENSMUSG00000033799	FS	N/X	1350	Tasor2	ENSMUST00000096069.4:c.4049del	ENSMUSP00000093774.3:p.Asn1350IlefsTer21	H-2-Kb	8	21	0	MSPWTFPL	NA	NetMHCpan	54.1	NA	NA	135	0.044	142.549	NA	NA	NA	57.2	NA	54.1	NA	227.8977303	NA	256.8857419	PW3325T1	0.142857143	0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.055	135	0	0	NA	13qA1	chr13-3559926-119339783	2	1	1	0.54	2	NON-ABERRANT	1	0.203703704	sgMlh1	colon
chr19	18690332	18690332	GT	G	ENSMUST00000025632.10	1	ENSMUSG00000024726	FS	S/X	222	Carnmt1	ENSMUST00000025632.10:c.672del	ENSMUSP00000025632.9:p.Phe224LeufsTer59	H-2-Kb	8	10	4	WSFLCSFL	WSFFMLFS	SMMPMBEC	41.471	1240.909	29.923	53	0.113	71.114	4360.255	61.313	8069.22	90.38	7479.6	185.9	926.2751223	51.84895408	1240.909187	41.47056956	PW3325T1	2.014285714	2.014285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.116	53	0	0	NA	19qB	chr19-3279476-59060521	2	1	1	0.54	2	NON-ABERRANT	1	0.42962963	sgMlh1	colon
chr14	103177262	103177262	GA	G	ENSMUST00000159855.7	1	ENSMUSG00000033004	FS	F/X	2571	Mycbp2	ENSMUST00000159855.7:c.7713del	ENSMUSP00000124710.1:p.Gln2573ArgfsTer14	H-2-Kb	8	8	6	KAFFPRNL	KAFFPQEP	NetMHCpan	57.6	16323.4	283.392	154	0.065	126.941	20665.292	162.795	19059.57	128.93	16323.4	57.6	22271.01447	124.9510759	33553.66776	167.3940435	PW3325T1	0.228571429	0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.065	154	0	0	NA	14qE2.3	chr14-3072210-123348696	2	1	1	0.54	2	NON-ABERRANT	1	0.240740741	sgMlh1	colon
chr11	100421000	100421000	GC	G	ENSMUST00000001595.9	1	ENSMUSG00000001555	FS	C/X	166	Fkbp10	ENSMUST00000001595.9:c.502del	ENSMUSP00000001595.3:p.Arg168GlufsTer42	H-2-Kb	8	26	0	MALCWMAL	NA	SMM	124.664	NA	NA	89	0.124	144.794	NA	NA	NA	138.67	NA	173.2	NA	124.6636964	NA	150.9176382	PW3325T1	2.1	2.1	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.135	89	0	0	NA	11qD	chr11-3133205-120955474	2	1	1	0.54	2	NON-ABERRANT	1	0.5	sgMlh1	colon
chr3	132732178	132732178	CA	C	ENSMUST00000169172.4	5	ENSMUSG00000028030	FS	K/X	455	Tbck	ENSMUST00000169172.4:c.1370del	ENSMUSP00000129205.1:p.Asn457IlefsTer15	H-2-Kb	8	6	8	KAYPYKKI	KAYPYKKN	NetMHCpan	105.4	7600.2	72.108	97	0.093	257.564	4240.361	16.463	10412.24	142.96	7600.2	105.4	699.4231455	392.4099402	880.5215715	372.1688324	PW3325T1	-0.814285714	-0.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0928	97	0	0	NA	3qG3	chr3-8666483-157994825	2	1	1	0.54	2	NON-ABERRANT	1	0.343703704	sgMlh1	colon
chr2	87672058	87672058	GA	G	ENSMUST00000213835.1	5	ENSMUSG00000075153	FS	F/X	103	Olfr1135	ENSMUST00000213835.1:c.308del	ENSMUSP00000150079.1:p.Phe103SerfsTer6	H-2-Kb	8	6	6	ALQFFSPV	ALQFFFTC	NetMHCpan	129.1	6179.9	47.869	151	0.093	303.351	5694.364	18.772	12422.74	217.89	6179.9	129.1	4423.234863	388.8123042	5208.827797	401.5503419	PW3325T1	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0927	151	0	0	NA	2qD	chr2-4992200-181815659	2	1	1	0.54	2	NON-ABERRANT	1	0.343333333	sgMlh1	colon
chr10	86044492	86044492	CT	C	ENSMUST00000130320.7	1	ENSMUSG00000001786	FS	L/X	347	Fbxo7	ENSMUST00000130320.7:c.1043del	ENSMUSP00000120840.1:p.Leu348TrpfsTer193	H-2-Kb	8	64	0	STYKEKRL	NA	SMMPMBEC	98.342	NA	NA	158	0.044	184.363	NA	NA	NA	233.91	NA	300.2	NA	134.8155538	NA	98.3422182	PW3325T1	-2	-2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.053	158	0	0	NA	10qC1	chr10-5218416-130354778	2	1	1	0.54	2	NON-ABERRANT	1	0.196296296	sgMlh1	colon
chr19	18690332	18690332	GT	G	ENSMUST00000025632.10	1	ENSMUSG00000024726	FS	S/X	222	Carnmt1	ENSMUST00000025632.10:c.672del	ENSMUSP00000025632.9:p.Phe224LeufsTer59	H-2-Kb	8	49	0	RSDPFFSL	NA	SMM	150.224	NA	NA	53	0.113	215.084	NA	NA	NA	257.29	NA	357.7	NA	150.2242346	NA	172.8781076	PW3325T1	0.385714286	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.116	53	0	0	NA	19qB	chr19-3279476-59060521	2	1	1	0.54	2	NON-ABERRANT	1	0.42962963	sgMlh1	colon
chr11	30139094	30139094	G	A	ENSMUST00000006629.13	5	ENSMUSG00000020315	missense	R/W	723	Sptbn1	ENSMUST00000006629.13:c.2167C>T	ENSMUSP00000006629.7:p.Arg723Trp	H-2-Kb	8	10	2	IWEQWANL	IREQWANL	SMMPMBEC	78.477	184.391	2.35	123	0.171	209.476	1073.203	5.123	2524.67	282.26	1842.5	593.8	303.9065077	136.691025	184.391119	78.47656766	PW3325T1	-0.957142857	-0.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.179	123	0	0	NA	11qA3.3	chr11-3133205-120955474	2	1	1	0.54	2	NON-ABERRANT	1	0.662962963	sgMlh1	colon
chr10	78000809	78000809	C	T	ENSMUST00000020522.8	1	ENSMUSG00000020277	missense	A/T	154	Pfkl	ENSMUST00000020522.8:c.460G>A	ENSMUSP00000020522.8:p.Ala154Thr	H-2-Kb	8	8	4	QNYTHLTI	QNYAHLTI	NetMHCpan	133	135.8	1.021	93	0.097	401.78	453.923	1.13	394.11	300.36	135.8	133	513.7360001	503.1992672	882.5513833	804.8964279	PW3325T1	-0.157142857	-0.157142857	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.103	93	0	0	NA	10qC1	chr10-5218416-130354778	2	1	1	0.54	2	NON-ABERRANT	1	0.381481481	sgMlh1	colon
chr2	165352440	165352440	CT	C	ENSMUST00000103085.7	1	ENSMUSG00000056824	FS	S/X	620	Zfp663	ENSMUST00000103085.7:c.1858del	ENSMUSP00000099374.1:p.Ser620ValfsTer39	H-2-Kb	8	11	1	VSARGRPL	NA	SMM	203.582	NA	NA	103	0.117	295.631	NA	NA	NA	386.74	NA	710.3	NA	203.5822922	NA	204.5219854	PW3325T1	-0.885714286	-0.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.103	103	0	0	NA	2qH3	chr2-4992200-181815659	2	1	1	0.54	2	NON-ABERRANT	1	0.381481481	sgMlh1	colon
chr2	86314946	86314946	TA	T	ENSMUST00000099897.4	NA	ENSMUSG00000075192	FS	F/X	113	Olfr1053	ENSMUST00000099897.4:c.339del	ENSMUSP00000097481.3:p.Phe113LeufsTer22	H-2-Kb	8	20	0	AMWPSATL	NA	NetMHCpan	214.2	NA	NA	192	0.057	482.155	NA	NA	NA	427.6	NA	214.2	NA	536.7103866	NA	563.3003227	PW3325T1	0.5	0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.059	192	0	0	NA	2qD	chr2-4992200-181815659	2	1	1	0.54	2	NON-ABERRANT	1	0.218518519	sgMlh1	colon
chr19	18690332	18690332	GT	G	ENSMUST00000025632.10	1	ENSMUSG00000024726	FS	S/X	222	Carnmt1	ENSMUST00000025632.10:c.672del	ENSMUSP00000025632.9:p.Phe224LeufsTer59	H-2-Kb	8	31	0	INFIPGSI	NA	NetMHCpan	107.1	NA	NA	53	0.113	428.515	NA	NA	NA	455	NA	107.1	NA	414.7056956	NA	442.3234863	PW3325T1	0.785714286	0.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.116	53	0	0	NA	19qB	chr19-3279476-59060521	2	1	1	0.54	2	NON-ABERRANT	1	0.42962963	sgMlh1	colon
chr2	88560233	88560233	GT	G	ENSMUST00000090701.4	NA	ENSMUSG00000068809	FS	F/X	255	Olfr1188	ENSMUST00000090701.4:c.768del	ENSMUSP00000088202.2:p.Phe256LeufsTer21	H-2-Kb	8	8	5	VVLFLCHV	VVLFFVPC	NetMHCpan	203.6	611.7	3.004	131	0.069	365.159	360.139	0.986	686.24	479.06	611.7	203.6	95.66211974	352.9717922	108.5775406	377.3462166	PW3325T1	2.585714286	2.585714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.069	131	0	0	NA	2qD	chr2-4992200-181815659	2	1	1	0.54	2	NON-ABERRANT	1	0.255555556	sgMlh1	colon
chr10	86044492	86044492	CT	C	ENSMUST00000130320.7	1	ENSMUSG00000001786	FS	L/X	347	Fbxo7	ENSMUST00000130320.7:c.1043del	ENSMUSP00000120840.1:p.Leu348TrpfsTer193	H-2-Kb	8	78	0	CSYHQPTL	NA	NetMHCpan	102.6	NA	NA	158	0.044	209.795	NA	NA	NA	492.09	NA	102.6	NA	147.4823333	NA	272.1071791	PW3325T1	-1.042857143	-1.042857143	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.053	158	0	0	NA	10qC1	chr10-5218416-130354778	2	1	1	0.54	2	NON-ABERRANT	1	0.196296296	sgMlh1	colon
chr3	87932179	87932179	TC	T	ENSMUST00000055984.6	1	ENSMUSG00000048039	FS	L/X	232	Isg20l2	ENSMUST00000055984.6:c.702del	ENSMUSP00000059783.6:p.Cys235AlafsTer32	H-2-Kb	8	30	0	TWLTLHPL	NA	SMMPMBEC	449.511	NA	NA	123	0.065	490.44	NA	NA	NA	498.11	NA	506.9	NA	482.7696948	NA	449.5106648	PW3325T1	0.714285714	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.067	123	0	0	NA	3qF1	chr3-8666483-157994825	2	1	1	0.54	2	NON-ABERRANT	1	0.248148148	sgMlh1	colon
chr12	104340760	104340760	G	A	ENSMUST00000043058.4	1	ENSMUSG00000058207	missense	A/T	84	Serpina3k	ENSMUST00000043058.4:c.250G>A	ENSMUSP00000042095.3:p.Ala84Thr	H-2-Kb	8	8	4	AALTLVSL	AALALVSL	NetMHCpan	304	371.2	1.221	225	0.036	472.913	500.431	1.058	628.92	499.09	371.2	304	489.4856902	479.4463315	511.3755976	466.380088	PW3325T1	2.271428571	2.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.04	225	0	0	NA	12qE	chr12-3236683-117875789	2	1	1	0.54	2	NON-ABERRANT	1	0.148148148	sgMlh1	colon
chr19	38943837	38943837	C	T	ENSMUST00000025965.11	1	ENSMUSG00000025001	missense	P/S	184	Hells	ENSMUST00000025965.11:c.550C>T	ENSMUSP00000025965.5:p.Pro184Ser	H-2-Kb	8	5	7	SKFFFDSV	SKFFFDPV	SMM	174.076	84.283	0.484	200	0.07	264.691	128.688	0.486	263.28	576.59	145.5	295.1	84.28300279	174.0764414	111.8767908	234.2825811	PW3325T1	0.628571429	0.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2	2	0.058	200	0	0	NA	19qC3	chr19-3279476-59060521	2	1	1	0.54	2	NON-ABERRANT	1	0.214814815	sgMlh1	colon
chr11	30139094	30139094	G	A	ENSMUST00000006629.13	5	ENSMUSG00000020315	missense	R/W	723	Sptbn1	ENSMUST00000006629.13:c.2167C>T	ENSMUSP00000006629.7:p.Arg723Trp	H-2-Kb	8	7	5	IIYIWEQW	IIYIREQW	SMM	228.423	1171.494	5.129	123	0.171	449.178	2200.037	4.898	2659.31	583.77	2984.7	2345.7	1171.493815	228.4230889	1740.764414	314.5864409	PW3325T1	-0.157142857	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.179	123	0	0	NA	11qA3.3	chr11-3133205-120955474	2	1	1	0.54	2	NON-ABERRANT	1	0.662962963	sgMlh1	colon
chr2	109093084	109093084	C	T	ENSMUST00000081631.9	1	ENSMUSG00000057234	missense	R/H	331	Mettl15	ENSMUST00000081631.9:c.992G>A	ENSMUSP00000080337.3:p.Arg331His	H-2-Kb	8	7	5	RIVKHFLL	RIVKRFLL	NetMHCpan	255.3	450.4	1.764	124	0.081	481.168	1802.118	3.745	951.22	585.84	450.4	255.3	2976.733808	456.8146256	2653.016799	505.5219295	PW3325T1	1.714285714	1.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.08	124	0	0	NA	2qE3	chr2-4992200-181815659	2	1	1	0.54	2	NON-ABERRANT	1	0.296296296	sgMlh1	colon
chr2	87002491	87002491	C	T	ENSMUST00000214002.1	5	ENSMUSG00000049843	missense	A/V	174	Olfr1102	ENSMUST00000214002.1:c.521C>T	ENSMUSP00000149634.1:p.Ala174Val	H-2-Kb	8	11	1	VTFSLSFC	ATFSLSFC	SMM	230.006	866.443	3.767	270	0.019	450.144	1571.841	3.492	6486.02	1375.22	2125.7	603.3	866.4430052	230.0064421	1017.981768	296.9887511	PW3325T1	1.371428571	1.614285714	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.024	270	0	0	NA	2qD	chr2-4992200-181815659	2	1	1	0.54	2	NON-ABERRANT	1	0.088888889	sgMlh1	colon
chr2	66280724	66280724	CT	C	ENSMUST00000112366.7	5	ENSMUSG00000064329	FS	K/X	1518	Scn1a	ENSMUST00000112366.7:c.4553del	ENSMUSP00000107985.1:p.Lys1518SerfsTer21	H-2-Kb	8	21	0	TNFKEWFL	NA	SMMPMBEC	298.36	NA	NA	130	0.062	354.102	NA	NA	NA	1378.18	NA	368	NA	340.2044578	NA	298.3595888	PW3325T1	-0.342857143	-0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.073	130	0	0	NA	2qC1.3	chr2-4992200-181815659	2	1	1	0.54	2	NON-ABERRANT	1	0.27037037	sgMlh1	colon
chr2	87672058	87672058	GA	G	ENSMUST00000213835.1	5	ENSMUSG00000075153	FS	F/X	103	Olfr1135	ENSMUST00000213835.1:c.308del	ENSMUSP00000150079.1:p.Phe103SerfsTer6	H-2-Kb	9	5	7	CALQFFSPV	CALQFFFTC	NetMHC	14.33	1775.36	123.891	151	0.093	54.962	1376.58	25.046	1775.36	14.33	2616.2	22	865.1870294	87.92451877	977.7999259	133.428929	PW3325T1	1.1	1.342857143	TRUE	FALSE	FALSE	1	FALSE	0	Strelka2;Vardict	2	0.0927	151	0	0	NA	2qD	chr2-4992200-181815659	2	1	1	0.54	2	NON-ABERRANT	1	0.343333333	sgMlh1	colon
chr1	190161834	190161834	TG	T	ENSMUST00000175916.7	1	ENSMUSG00000010175	FS	P/X	138	Prox1	ENSMUST00000175916.7:c.413del	ENSMUSP00000135703.1:p.Pro138GlnfsTer12	H-2-Kb	9	12	0	SVFPLLAGL	NA	NetMHC	18.22	NA	NA	98	0.051	74.229	NA	NA	NA	18.22	NA	25.4	NA	123.0580418	NA	160.0479073	PW3325T1	2	2.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.065	98	0	0	NA	1qH6	chr1-6245696-191013439	2	2	0	0.54	2	NON-ABERRANT	1	0.240740741	sgMlh1	colon
chr4	116095813	116095813	G	A	ENSMUST00000030471.8	1	ENSMUSG00000028703	missense	R/H	676	Lrrc41	ENSMUST00000030471.8:c.2027G>A	ENSMUSP00000030471.8:p.Arg676His	H-2-Kb	9	5	7	ITFSFCHLF	ITFSFCRLF	NetMHCpan	22.5	23.1	1.027	99	0.414	56.889	52.728	0.927	29.58	41.98	23.1	22.5	75.87697352	71.79761204	107.4607828	96.88354023	PW3325T1	1.528571429	1.528571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.407	99	0	0	NA	4qD1	chr4-6204537-155750465	2	1	1	0.54	2	NON-ABERRANT	1	0.753703704	sgMlh1	colon
chr10	78000809	78000809	C	T	ENSMUST00000020522.8	1	ENSMUSG00000020277	missense	A/T	154	Pfkl	ENSMUST00000020522.8:c.460G>A	ENSMUSP00000020522.8:p.Ala154Thr	H-2-Kb	9	5	7	STAQNYTHL	STAQNYAHL	NetMHC	63.66	18.19	0.286	93	0.097	202.455	138.958	0.686	18.19	63.66	67	123	210.91623	281.9096874	219.9125427	299.3987618	PW3325T1	-0.942857143	-0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.103	93	0	0	NA	10qC1	chr10-5218416-130354778	2	1	1	0.54	2	NON-ABERRANT	1	0.381481481	sgMlh1	colon
chr11	30139094	30139094	G	A	ENSMUST00000006629.13	5	ENSMUSG00000020315	missense	R/W	723	Sptbn1	ENSMUST00000006629.13:c.2167C>T	ENSMUSP00000006629.7:p.Arg723Trp	H-2-Kb	9	9	3	YIWEQWANL	YIREQWANL	NetMHC	64.93	187.29	2.884	123	0.171	214.616	409.406	1.908	187.29	64.93	260.2	115	558.6116644	319.2346324	652.0036095	314.2317036	PW3325T1	-0.957142857	-0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.179	123	0	0	NA	11qA3.3	chr11-3133205-120955474	2	1	1	0.54	2	NON-ABERRANT	1	0.662962963	sgMlh1	colon
chr2	88560233	88560233	GT	G	ENSMUST00000090701.4	NA	ENSMUSG00000068809	FS	F/X	255	Olfr1188	ENSMUST00000090701.4:c.768del	ENSMUSP00000088202.2:p.Phe256LeufsTer21	H-2-Kb	9	7	6	VVVLFLCHV	VVVLFFVPC	NetMHC	66.9	253	3.782	131	0.069	154.584	216.259	1.399	253	66.9	988.4	176.7	179.5188262	132.4677013	141.0100284	181.2383084	PW3325T1	2.585714286	3.642857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.069	131	0	0	NA	2qD	chr2-4992200-181815659	2	1	1	0.54	2	NON-ABERRANT	1	0.255555556	sgMlh1	colon
chr14	52390429	52390429	T	C	ENSMUST00000214168.1	5	ENSMUSG00000063867	missense	T/A	115	Olfr1511	ENSMUST00000214168.1:c.343A>G	ENSMUSP00000149479.1:p.Thr115Ala	H-2-Kb	9	10	2	SAQCFLYTL	STQCFLYTL	NetMHCpan	77.6	78.3	1.009	167	0.024	184.047	246.002	1.337	105.54	87.48	78.3	77.6	386.4648502	280.61443	548.5926694	424.864065	PW3325T1	1.057142857	1.057142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.032	167	0	0	NA	14qC2	chr14-3072210-123348696	2	1	1	0.54	2	NON-ABERRANT	1	0.118518519	sgMlh1	colon
chr19	18690332	18690332	GT	G	ENSMUST00000025632.10	1	ENSMUSG00000024726	FS	S/X	222	Carnmt1	ENSMUST00000025632.10:c.672del	ENSMUSP00000025632.9:p.Phe224LeufsTer59	H-2-Kb	9	49	0	RSDPFFSLM	NA	NetMHC	108.81	NA	NA	53	0.113	198.507	NA	NA	NA	108.81	NA	116.4	NA	280.61443	NA	370.0411313	PW3325T1	0.771428571	0.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.116	53	0	0	NA	19qB	chr19-3279476-59060521	2	1	1	0.54	2	NON-ABERRANT	1	0.42962963	sgMlh1	colon
chr2	86314946	86314946	TA	T	ENSMUST00000099897.4	NA	ENSMUSG00000075192	FS	F/X	113	Olfr1053	ENSMUST00000099897.4:c.339del	ENSMUSP00000097481.3:p.Phe113LeufsTer22	H-2-Kb	9	6	6	IITEFLSCL	IITEFFILS	NetMHC	128.37	2701.59	21.045	192	0.057	190.846	1594.411	8.354	2701.59	128.37	2696.5	142.3	269.2216614	239.3922023	492.3228579	257.7804634	PW3325T1	1.128571429	1.514285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.059	192	0	0	NA	2qD	chr2-4992200-181815659	2	1	1	0.54	2	NON-ABERRANT	1	0.218518519	sgMlh1	colon
chr10	105303602	105303602	C	T	ENSMUST00000061506.8	1	ENSMUSG00000036019	missense	A/T	688	Tmtc2	ENSMUST00000061506.8:c.2062G>A	ENSMUSP00000061919.8:p.Ala688Thr	H-2-Kb	9	4	8	LTYGKLLTL	LTYGKLLAL	NetMHCpan	82.3	83	1.009	84	0.036	114.34	105.318	0.921	105.38	130.32	83	82.3	108.6700833	115.3745446	105.2567606	113.3052413	PW3325T1	0.728571429	0.728571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.05	84	0	0	NA	10qD1	chr10-5218416-130354778	2	1	1	0.54	2	NON-ABERRANT	1	0.185185185	sgMlh1	colon
chr14	50083912	50083912	TA	T	ENSMUST00000215105.1	5	ENSMUSG00000060523	FS	F/X	256	Olfr726	ENSMUST00000215105.1:c.768del	ENSMUSP00000150599.1:p.Phe256LeufsTer27	H-2-Kb	9	9	3	CILSMHGPL	NA	NetMHC	149.62	NA	NA	293	0.048	263.038	NA	NA	NA	149.62	NA	277.7	NA	248.3762124	NA	389.2691619	PW3325T1	0.5	1.185714286	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.051	293	0	0	NA	14qC1	chr14-3072210-123348696	2	1	1	0.54	2	NON-ABERRANT	1	0.188888889	sgMlh1	colon
chr19	17329306	17329306	T	C	ENSMUST00000174236.7	1	ENSMUSG00000038843	missense	R/G	352	Gcnt1	ENSMUST00000174236.7:c.1054A>G	ENSMUSP00000133935.2:p.Arg352Gly	H-2-Kb	9	10	2	AGFVKWQYF	ARFVKWQYF	NetMHC	163.33	523.17	3.203	128	0.172	205.52	459.838	2.237	523.17	163.33	2579.4	183.4	357.3633412	235.0228021	396.5062159	227.6407459	PW3325T1	0.028571429	0.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.182	128	0	0	NA	19qB	chr19-3279476-59060521	2	1	1	0.54	2	NON-ABERRANT	1	0.674074074	sgMlh1	colon
chr2	25194790	25194790	T	A	ENSMUST00000081869.6	1	ENSMUSG00000059555	missense	N/I	367	Tor4a	ENSMUST00000081869.6:c.1100A>T	ENSMUSP00000080548.6:p.Asn367Ile	H-2-Kb	9	9	3	VVICFREEM	VVNCFREEM	NetMHCpan	115.2	809.4	7.026	86	0.035	200.687	596.918	2.974	620.71	172.23	809.4	115.2	501.3141926	229.1447967	573.1258538	260.7654204	PW3325T1	0.028571429	1.457142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.049	86	0	0	NA	2qA3	chr2-4992200-181815659	2	1	1	0.54	2	NON-ABERRANT	1	0.181481481	sgMlh1	colon
chr6	71235346	71235346	A	G	ENSMUST00000074301.9	1	ENSMUSG00000055027	missense	M/T	232	Smyd1	ENSMUST00000074301.9:c.695T>C	ENSMUSP00000073911.3:p.Met232Thr	H-2-Kb	9	5	7	SMFHTQTRI	SMFHTQMRI	NetMHC	199.05	125.5	0.63	86	0.07	264.352	215.281	0.814	125.5	199.05	176.4	280.9	254.1616376	247.8049629	364.9639766	329.0409876	PW3325T1	-0.757142857	-0.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.089	86	0	0	NA	6qC1	chr6-5272904-149014300	2	1	1	0.54	2	NON-ABERRANT	1	0.32962963	sgMlh1	colon
chr5	109292753	109292753	T	C	ENSMUST00000167133.2	5	ENSMUSG00000091375	missense	H/R	413	Vmn2r15	ENSMUST00000167133.2:c.1238A>G	ENSMUSP00000128333.1:p.His413Arg	H-2-Kb	9	6	6	VAHTYRELI	VAHTYHELI	NetMHC	222.06	106.25	0.478	318	0.031	390.755	194.689	0.498	106.25	222.06	139.2	364.4	304.8667072	459.3143352	250.1785091	417.1094219	PW3325T1	-0.7	-0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.032	318	0	0	NA	5qF	chr5-8064510-150513023	2	2	0	0.54	2	NON-ABERRANT	1	0.118518519	sgMlh1	colon
chr2	25243987	25243987	TG	T	ENSMUST00000114355.1	NA	ENSMUSG00000044628	FS	W/X	231	Rnf208	ENSMUST00000114355.1:c.698del	ENSMUSP00000109995.1:p.Gly233ValfsTer60	H-2-Kb	9	61	0	SSGNWLCPV	NA	NetMHC	227.65	NA	NA	64	0.094	490.55	NA	NA	NA	227.65	NA	987.3	NA	488.776143	NA	492.3228579	PW3325T1	0.585714286	0.585714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.114	64	0	0	NA	2qA3	chr2-4992200-181815659	2	1	1	0.54	2	NON-ABERRANT	1	0.422222222	sgMlh1	colon
chr10	86044492	86044492	CT	C	ENSMUST00000130320.7	1	ENSMUSG00000001786	FS	L/X	347	Fbxo7	ENSMUST00000130320.7:c.1043del	ENSMUSP00000120840.1:p.Leu348TrpfsTer193	H-2-Kb	9	113	0	MMRGRYCLV	NA	SMM	89.973	NA	NA	158	0.044	175.154	NA	NA	NA	232.75	NA	696	NA	89.97254391	NA	117.5574075	PW3325T1	-0.028571429	-0.028571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.053	158	0	0	NA	10qC1	chr10-5218416-130354778	2	1	1	0.54	2	NON-ABERRANT	1	0.196296296	sgMlh1	colon
chr3	87932179	87932179	TC	T	ENSMUST00000055984.6	1	ENSMUSG00000048039	FS	L/X	232	Isg20l2	ENSMUST00000055984.6:c.702del	ENSMUSP00000059783.6:p.Cys235AlafsTer32	H-2-Kb	9	29	0	ATWLTLHPL	NA	NetMHC	241.56	NA	NA	123	0.065	353.428	NA	NA	NA	241.56	NA	252.8	NA	454.0566075	NA	565.2622723	PW3325T1	0.714285714	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.067	123	0	0	NA	3qF1	chr3-8666483-157994825	2	1	1	0.54	2	NON-ABERRANT	1	0.248148148	sgMlh1	colon
chr11	100421000	100421000	GC	G	ENSMUST00000001595.9	1	ENSMUSG00000001555	FS	C/X	166	Fkbp10	ENSMUST00000001595.9:c.502del	ENSMUSP00000001595.3:p.Arg168GlufsTer42	H-2-Kb	9	25	0	TMALCWMAL	NA	SMM	238.292	NA	NA	89	0.124	257.785	NA	NA	NA	257.79	NA	545.4	NA	238.292295	NA	257.7804634	PW3325T1	2.1	2.1	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.135	89	0	0	NA	11qD	chr11-3133205-120955474	2	1	1	0.54	2	NON-ABERRANT	1	0.5	sgMlh1	colon
chr2	86314946	86314946	TA	T	ENSMUST00000099897.4	NA	ENSMUSG00000075192	FS	F/X	113	Olfr1053	ENSMUST00000099897.4:c.339del	ENSMUSP00000097481.3:p.Phe113LeufsTer22	H-2-Kb	9	19	0	TAMWPSATL	NA	NetMHC	293.42	NA	NA	192	0.057	416.138	NA	NA	NA	293.42	NA	343.5	NA	488.776143	NA	658.0365246	PW3325T1	0.5	0.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.059	192	0	0	NA	2qD	chr2-4992200-181815659	2	1	1	0.54	2	NON-ABERRANT	1	0.218518519	sgMlh1	colon
chr10	86044492	86044492	CT	C	ENSMUST00000130320.7	1	ENSMUSG00000001786	FS	L/X	347	Fbxo7	ENSMUST00000130320.7:c.1043del	ENSMUSP00000120840.1:p.Leu348TrpfsTer193	H-2-Kb	9	148	0	TLLTHFQDL	NA	NetMHCpan	253.9	NA	NA	158	0.044	398.106	NA	NA	NA	335.69	NA	253.9	NA	776.4437528	NA	460.5215948	PW3325T1	-0.071428571	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.053	158	0	0	NA	10qC1	chr10-5218416-130354778	2	1	1	0.54	2	NON-ABERRANT	1	0.196296296	sgMlh1	colon
chr2	87002491	87002491	C	T	ENSMUST00000214002.1	5	ENSMUSG00000049843	missense	A/V	174	Olfr1102	ENSMUST00000214002.1:c.521C>T	ENSMUSP00000149634.1:p.Ala174Val	H-2-Kb	9	9	3	TVVTFSLSF	TVATFSLSF	NetMHC	353.49	586.5	1.659	270	0.019	495.608	598.096	1.207	586.5	353.49	549.3	442.8	609.691303	548.4158525	820.8239126	637.1621954	PW3325T1	1.614285714	1.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.024	270	0	0	NA	2qD	chr2-4992200-181815659	2	1	1	0.54	2	NON-ABERRANT	1	0.088888889	sgMlh1	colon
chr2	88560233	88560233	GT	G	ENSMUST00000090701.4	NA	ENSMUSG00000068809	FS	F/X	255	Olfr1188	ENSMUST00000090701.4:c.768del	ENSMUSP00000088202.2:p.Phe256LeufsTer21	H-2-Kb	9	9	4	VLFLCHVFL	NA	SMMPMBEC	268.689	NA	NA	131	0.069	362.304	NA	NA	NA	358.92	NA	525.2	NA	365.6874028	NA	268.6890699	PW3325T1	2.385714286	2.585714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.069	131	0	0	NA	2qD	chr2-4992200-181815659	2	1	1	0.54	2	NON-ABERRANT	1	0.255555556	sgMlh1	colon
chr17	83428234	83428234	GA	G	ENSMUST00000096766.11	1	ENSMUSG00000032624	FS	E/X	229	Eml4	ENSMUST00000096766.11:c.692del	ENSMUSP00000094528.4:p.Asn231ThrfsTer65	H-2-Kb	9	52	0	SNWSGYTVI	NA	NetMHCpan	176.5	NA	NA	137	0.058	410.401	NA	NA	NA	508.32	NA	176.5	NA	430.63567	NA	390.1665199	PW3325T1	0.657142857	0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.057	137	0	0	NA	17qE4	chr17-3545491-89046578	2	1	1	0.54	2	NON-ABERRANT	1	0.211111111	sgMlh1	colon
chr14	103177262	103177262	GA	G	ENSMUST00000159855.7	1	ENSMUSG00000033004	FS	F/X	2571	Mycbp2	ENSMUST00000159855.7:c.7713del	ENSMUSP00000124710.1:p.Gln2573ArgfsTer14	H-2-Kb	9	9	5	AFFPRNLKL	AFFPQEPKT	NetMHCpan	344.2	14946.7	43.424	154	0.065	446.4	7207.152	16.145	10007.64	580.16	14946.7	344.2	4406.664633	526.1505152	4001.750427	366.6485738	PW3325T1	-0.442857143	0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.065	154	0	0	NA	14qE2.3	chr14-3072210-123348696	2	1	1	0.54	2	NON-ABERRANT	1	0.240740741	sgMlh1	colon
chr7	48447823	48447823	GA	G	ENSMUST00000094384.3	1	ENSMUSG00000070547	FS	S/X	114	Mrgprb1	ENSMUST00000094384.3:c.340del	ENSMUSP00000091946.3:p.Ser114HisfsTer7	H-2-Db	9	4	8	FIPTNFFHL	FIPTNFFSS	NetMHC	254.27	8366.16	32.903	149	0.087	468.843	5511.111	11.755	8366.16	254.27	7477.6	274.6	2894.809572	732.1836051	3544.622582	663.0862159	PW3325T1	0.057142857	1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0872	149	0	0	NA	7qB4	chr7-4477867-142893198	2	1	1	0.54	2	NON-ABERRANT	1	0.322962963	sgMlh1	colon
chr7	86306282	86306282	G	T	ENSMUST00000174158.2	2	ENSMUSG00000054054	missense	T/N	277	Olfr309	ENSMUST00000174158.2:c.830C>A	ENSMUSP00000134377.1:p.Thr277Asn	H-2-Db	9	7	5	AALYNLVTP	AALYTLVTP	SMM	154.39	7492.384	48.529	162	0.093	301.557	11266.826	37.362	19631.38	418.37	14450.7	823.4	7492.383521	154.3902961	8082.952004	184.7438543	PW3325T1	0.671428571	1.514285714	FALSE	FALSE	TRUE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.096	162	0	0	NA	7qD3	chr7-4477867-142893198	2	1	1	0.54	2	NON-ABERRANT	1	0.355555556	sgMlh1	colon
chr7	41427665	41427665	GA	G	ENSMUST00000165029.2	5	ENSMUSG00000066537	FS	F/X	359	Vmn2r57	ENSMUST00000165029.2:c.1076del	ENSMUSP00000125817.1:p.Phe359SerfsTer14	H-2-Db	9	11	1	SSIALFLSL	NA	SMM	330.842	NA	NA	273	0.121	479.544	NA	NA	NA	678.31	NA	578.4	NA	330.8415143	NA	380.6887124	PW3325T1	2.814285714	2.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.126	273	0	0	NA	7qB3	chr7-4477867-142893198	2	1	1	0.54	2	NON-ABERRANT	1	0.466666667	sgMlh1	colon
chr7	34202537	34202537	TC	T	ENSMUST00000038027.5	1	ENSMUSG00000036427	FS	G/X	518	Gpi1	ENSMUST00000038027.5:c.1554del	ENSMUSP00000049355.4:p.Lys519SerfsTer17	H-2-Kb	8	20	0	RSWRAALL	NA	NetMHC	30.81	NA	NA	110	0.109	72.735	NA	NA	NA	30.81	NA	72.4	NA	84.28300279	NA	73.07015019	PW3325T1	0.714285714	0.714285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.118	110	0	0	NA	7qB1	chr7-4477867-142893198	2	1	1	0.54	2	NON-ABERRANT	1	0.437037037	sgMlh1	colon
chr7	41427665	41427665	GA	G	ENSMUST00000165029.2	5	ENSMUSG00000066537	FS	F/X	359	Vmn2r57	ENSMUST00000165029.2:c.1076del	ENSMUSP00000125817.1:p.Phe359SerfsTer14	H-2-Kb	8	12	0	SIALFLSL	NA	NetMHCpan	31.5	NA	NA	273	0.121	55.983	NA	NA	NA	54.19	NA	31.5	NA	57.7750061	NA	80.67519058	PW3325T1	2.814285714	2.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.126	273	0	0	NA	7qB3	chr7-4477867-142893198	2	1	1	0.54	2	NON-ABERRANT	1	0.466666667	sgMlh1	colon
chr7	48447823	48447823	GA	G	ENSMUST00000094384.3	1	ENSMUSG00000070547	FS	S/X	114	Mrgprb1	ENSMUST00000094384.3:c.340del	ENSMUSP00000091946.3:p.Ser114HisfsTer7	H-2-Kb	8	7	5	TNFFHLTL	TNFFSSYT	NetMHCpan	9	872.6	96.956	149	0.087	52.194	1723.099	33.013	2320.87	59.54	872.6	9	1843.91119	44.8476819	1602.28586	59.80534499	PW3325T1	0.828571429	0.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0872	149	0	0	NA	7qB4	chr7-4477867-142893198	2	1	1	0.54	2	NON-ABERRANT	1	0.322962963	sgMlh1	colon
chr9	38775863	38775863	AG	A	ENSMUST00000217114.2	2	ENSMUSG00000049926	FS	G/X	203	Olfr921	ENSMUST00000217114.2:c.611del	ENSMUSP00000150844.2:p.Gly204GlufsTer25	H-2-Kb	8	14	1	TSFFPVPL	NA	NetMHCpan	20.1	NA	NA	178	0.163	44.312	NA	NA	NA	68.32	NA	20.1	NA	42.73069928	NA	45.89231861	PW3325T1	1.371428571	1.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.171	178	0	0	NA	9qA5.1	chr9-5306814-123664738	2	1	1	0.54	2	NON-ABERRANT	1	0.633333333	sgMlh1	colon
chr7	86306282	86306282	G	T	ENSMUST00000174158.2	2	ENSMUSG00000054054	missense	T/N	277	Olfr309	ENSMUST00000174158.2:c.830C>A	ENSMUSP00000134377.1:p.Thr277Asn	H-2-Kb	8	6	6	VAALYNLV	VAALYTLV	NetMHC	145.23	91.63	0.631	162	0.093	198.605	143.249	0.721	91.63	145.23	68.3	147.9	194.8677632	249.310173	259.2626764	364.5356443	PW3325T1	1.514285714	1.514285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.096	162	0	0	NA	7qD3	chr7-4477867-142893198	2	1	1	0.54	2	NON-ABERRANT	1	0.355555556	sgMlh1	colon
chr9	38775863	38775863	AG	A	ENSMUST00000217114.2	2	ENSMUSG00000049926	FS	G/X	203	Olfr921	ENSMUST00000217114.2:c.611del	ENSMUSP00000150844.2:p.Gly204GlufsTer25	H-2-Kb	8	19	0	VPLSFSLM	NA	SMM	135.126	NA	NA	178	0.163	152.318	NA	NA	NA	145.51	NA	348.4	NA	135.1263357	NA	159.1255801	PW3325T1	1.3	1.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.171	178	0	0	NA	9qA5.1	chr9-5306814-123664738	2	1	1	0.54	2	NON-ABERRANT	1	0.633333333	sgMlh1	colon
chr7	41427665	41427665	GA	G	ENSMUST00000165029.2	5	ENSMUSG00000066537	FS	F/X	359	Vmn2r57	ENSMUST00000165029.2:c.1076del	ENSMUSP00000125817.1:p.Phe359SerfsTer14	H-2-Kb	8	6	6	KFWVFSSI	KFWVFFFN	NetMHCpan	133.7	10876.8	81.352	273	0.121	155.427	2182.449	14.042	4074	201.7	10876.8	133.7	264.0827294	174.4777291	290.8975074	136.3766443	PW3325T1	1.685714286	1.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.126	273	0	0	NA	7qB3	chr7-4477867-142893198	2	1	1	0.54	2	NON-ABERRANT	1	0.466666667	sgMlh1	colon
chr7	86306282	86306282	G	T	ENSMUST00000174158.2	2	ENSMUSG00000054054	missense	T/N	277	Olfr309	ENSMUST00000174158.2:c.830C>A	ENSMUSP00000134377.1:p.Thr277Asn	H-2-Kb	8	5	7	VVAALYNL	VVAALYTL	NetMHCpan	69.5	164.1	2.361	162	0.093	169.901	493.25	2.903	791.77	213.44	164.1	69.5	403.403814	135.7500506	583.0959165	204.0515979	PW3325T1	1.514285714	1.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.096	162	0	0	NA	7qD3	chr7-4477867-142893198	2	1	1	0.54	2	NON-ABERRANT	1	0.355555556	sgMlh1	colon
chr7	48447823	48447823	GA	G	ENSMUST00000094384.3	1	ENSMUSG00000070547	FS	S/X	114	Mrgprb1	ENSMUST00000094384.3:c.340del	ENSMUSP00000091946.3:p.Ser114HisfsTer7	H-2-Kb	8	5	7	IPTNFFHL	IPTNFFSS	SMM	79.021	1408.445	17.824	149	0.087	167.029	6733.749	40.315	14705.15	243.33	11140.8	394.7	1408.445349	79.02054124	2326.697911	90.7277206	PW3325T1	0.057142857	0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0872	149	0	0	NA	7qB4	chr7-4477867-142893198	2	1	1	0.54	2	NON-ABERRANT	1	0.322962963	sgMlh1	colon
chrX	49886244	49886244	G	T	ENSMUST00000217355.2	5	ENSMUSG00000056281	missense	P/H	53	Olfr1322	ENSMUST00000217355.2:c.158C>A	ENSMUSP00000150512.1:p.Pro53His	H-2-Kb	8	9	3	HTHMYFFL	HTPMYFFL	SMMPMBEC	114.747	159.492	1.39	136	0.044	144.238	176.956	1.227	197.23	297.77	117.9	115.2	194.4195797	173.2766328	159.4924025	114.746646	PW3325T1	0.871428571	0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.049	136	0	0	NA	XqA5	chrX-7946841-169987429	2	2	0	0.54	2	NON-ABERRANT	1	0.181481481	sgMlh1	colon
chr7	41427665	41427665	GA	G	ENSMUST00000165029.2	5	ENSMUSG00000066537	FS	F/X	359	Vmn2r57	ENSMUST00000165029.2:c.1076del	ENSMUSP00000125817.1:p.Phe359SerfsTer14	H-2-Kb	8	8	4	WVFSSIAL	NA	SMM	272.734	NA	NA	273	0.121	375.762	NA	NA	NA	476.9	NA	622.5	NA	272.7344509	NA	274.6249558	PW3325T1	2.214285714	2.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.126	273	0	0	NA	7qB3	chr7-4477867-142893198	2	1	1	0.54	2	NON-ABERRANT	1	0.466666667	sgMlh1	colon
chr7	41427665	41427665	GA	G	ENSMUST00000165029.2	5	ENSMUSG00000066537	FS	F/X	359	Vmn2r57	ENSMUST00000165029.2:c.1076del	ENSMUSP00000125817.1:p.Phe359SerfsTer14	H-2-Kb	9	11	1	SSIALFLSL	NA	NetMHCpan	22.4	NA	NA	273	0.121	104.347	NA	NA	NA	32.8	NA	22.4	NA	178.6940122	NA	175.8935847	PW3325T1	2.814285714	2.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.126	273	0	0	NA	7qB3	chr7-4477867-142893198	2	1	1	0.54	2	NON-ABERRANT	1	0.466666667	sgMlh1	colon
chr7	34202537	34202537	TC	T	ENSMUST00000038027.5	1	ENSMUSG00000036427	FS	G/X	518	Gpi1	ENSMUST00000038027.5:c.1554del	ENSMUSP00000049355.4:p.Lys519SerfsTer17	H-2-Kb	9	18	0	LSRSWRAAL	NA	NetMHC	51.38	NA	NA	110	0.109	303.855	NA	NA	NA	51.38	NA	467.5	NA	274.859024	NA	332.8511027	PW3325T1	-0.471428571	-0.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.118	110	0	0	NA	7qB1	chr7-4477867-142893198	2	1	1	0.54	2	NON-ABERRANT	1	0.437037037	sgMlh1	colon
chrX	49886244	49886244	G	T	ENSMUST00000217355.2	5	ENSMUSG00000056281	missense	P/H	53	Olfr1322	ENSMUST00000217355.2:c.158C>A	ENSMUSP00000150512.1:p.Pro53His	H-2-Kb	9	11	1	HMYFFLGHF	PMYFFLGHF	SMM	39.365	34.523	0.877	136	0.044	71.106	122.553	1.724	196.1	87.98	554.7	118.2	34.52311699	39.36497682	49.00608399	54.2312981	PW3325T1	1.042857143	1.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.049	136	0	0	NA	XqA5	chrX-7946841-169987429	2	2	0	0.54	2	NON-ABERRANT	1	0.181481481	sgMlh1	colon
chr9	38775863	38775863	AG	A	ENSMUST00000217114.2	2	ENSMUSG00000049926	FS	G/X	203	Olfr921	ENSMUST00000217114.2:c.611del	ENSMUSP00000150844.2:p.Gly204GlufsTer25	H-2-Kb	9	21	0	LSFSLMASF	NA	NetMHCpan	92	NA	NA	178	0.163	151.072	NA	NA	NA	107.11	NA	92	NA	195.0338527	NA	195.0967344	PW3325T1	1.642857143	1.785714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.171	178	0	0	NA	9qA5.1	chr9-5306814-123664738	2	1	1	0.54	2	NON-ABERRANT	1	0.633333333	sgMlh1	colon
chr7	48447823	48447823	GA	G	ENSMUST00000094384.3	1	ENSMUSG00000070547	FS	S/X	114	Mrgprb1	ENSMUST00000094384.3:c.340del	ENSMUSP00000091946.3:p.Ser114HisfsTer7	H-2-Kb	9	4	8	FIPTNFFHL	FIPTNFFSS	NetMHC	109.35	7099.36	64.923	149	0.087	371.832	5630.43	15.142	7099.36	109.35	8306.3	251.5	2410.515897	492.1641774	4161.500968	590.540925	PW3325T1	0.057142857	1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0872	149	0	0	NA	7qB4	chr7-4477867-142893198	2	1	1	0.54	2	NON-ABERRANT	1	0.322962963	sgMlh1	colon
chr7	41427665	41427665	GA	G	ENSMUST00000165029.2	5	ENSMUSG00000066537	FS	F/X	359	Vmn2r57	ENSMUST00000165029.2:c.1076del	ENSMUSP00000125817.1:p.Phe359SerfsTer14	H-2-Kb	9	12	0	SIALFLSLI	NA	NetMHC	146.29	NA	NA	273	0.121	217.878	NA	NA	NA	146.29	NA	232	NA	203.7558094	NA	346.9365057	PW3325T1	2.814285714	2.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.126	273	0	0	NA	7qB3	chr7-4477867-142893198	2	1	1	0.54	2	NON-ABERRANT	1	0.466666667	sgMlh1	colon
chr7	48447823	48447823	GA	G	ENSMUST00000094384.3	1	ENSMUSG00000070547	FS	S/X	114	Mrgprb1	ENSMUST00000094384.3:c.340del	ENSMUSP00000091946.3:p.Ser114HisfsTer7	H-2-Kb	9	7	5	TNFFHLTLW	NA	SMMPMBEC	176.705	NA	NA	149	0.087	248.67	NA	NA	NA	204.85	NA	509.2	NA	292.4893114	NA	176.7054726	PW3325T1	1.2	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0872	149	0	0	NA	7qB4	chr7-4477867-142893198	2	1	1	0.54	2	NON-ABERRANT	1	0.322962963	sgMlh1	colon
chr8	72469907	72469907	G	A	ENSMUST00000212991.1	1	ENSMUSG00000052488	missense	R/W	211	Cherp	ENSMUST00000212991.1:c.631C>T	ENSMUSP00000148273.1:p.Arg211Trp	H-2-Kb	9	6	6	AHFELWLHL	AHFELRLHL	NetMHCpan	141.1	203.2	1.44	82	0.049	238.531	506.384	2.123	431.67	265.79	203.2	141.1	602.7122243	253.577082	581.0988286	223.4858341	PW3325T1	0.942857143	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.054	82	0	0	NA	8qB3.3	chr8-3386732-127409529	2	1	1	0.54	2	NON-ABERRANT	1	0.2	sgMlh1	colon
chr7	86306282	86306282	G	T	ENSMUST00000174158.2	2	ENSMUSG00000054054	missense	T/N	277	Olfr309	ENSMUST00000174158.2:c.830C>A	ENSMUSP00000134377.1:p.Thr277Asn	H-2-Kb	9	5	7	VVAALYNLV	VVAALYTLV	SMM	202.82	220.856	1.089	162	0.093	308.825	276.55	0.895	285.8	333.04	281.3	529.2	220.8564057	202.8196365	271.8003427	284.6098982	PW3325T1	1.514285714	1.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.096	162	0	0	NA	7qD3	chr7-4477867-142893198	2	1	1	0.54	2	NON-ABERRANT	1	0.355555556	sgMlh1	colon
chr9	38775863	38775863	AG	A	ENSMUST00000217114.2	2	ENSMUSG00000049926	FS	G/X	203	Olfr921	ENSMUST00000217114.2:c.611del	ENSMUSP00000150844.2:p.Gly204GlufsTer25	H-2-Kb	9	25	0	LMASFSPTF	NA	SMM	185.4	NA	NA	178	0.163	402.934	NA	NA	NA	399.19	NA	465.4	NA	185.4001153	NA	406.6773641	PW3325T1	0.5	1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.171	178	0	0	NA	9qA5.1	chr9-5306814-123664738	2	1	1	0.54	2	NON-ABERRANT	1	0.633333333	sgMlh1	colon
chr6	42956131	42956131	G	A	ENSMUST00000204092.2	5	ENSMUSG00000073110	missense	C/Y	211	Olfr444	ENSMUST00000204092.2:c.632G>A	ENSMUSP00000144691.2:p.Cys211Tyr	H-2-Kb	8	7	5	VGPLYLVL	VGPLCLVL	NetMHCpan	38.2	1006.6	26.351	258	0.062	63.281	965.372	15.255	2361.96	49.34	1006.6	38.2	864.4502416	77.22181412	924.1447486	94.56708451	PW3328T1	1.757142857	1.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.07	258	0	0	NA	6qB2.1	chr6-8175131-149014300	2	1	1	0.72	2	NON-ABERRANT;POOR GOF (77.5%)	1	0.194444444	sgMsh3	colon
chr6	42956131	42956131	G	A	ENSMUST00000204092.2	5	ENSMUSG00000073110	missense	C/Y	211	Olfr444	ENSMUST00000204092.2:c.632G>A	ENSMUSP00000144691.2:p.Cys211Tyr	H-2-Kb	9	7	5	VGPLYLVLV	VGPLCLVLV	NetMHCpan	121.5	1946.2	16.018	258	0.062	243.767	1183.989	4.857	1135.4	143.89	1946.2	121.5	1151.091906	343.6449768	1216.886295	377.7896015	PW3328T1	2.414285714	2.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.07	258	0	0	NA	6qB2.1	chr6-8175131-149014300	2	1	1	0.72	2	NON-ABERRANT;POOR GOF (77.5%)	1	0.194444444	sgMsh3	colon
chr2	86553636	86553636	T	C	ENSMUST00000213185.1	2	ENSMUSG00000110912	missense	I/V	163	Olfr1080	ENSMUST00000213185.1:c.487A>G	ENSMUSP00000150502.1:p.Ile163Val	H-2-Kb	8	7	5	VTINVFSL	VTINIFSL	NetMHCpan	62.9	47.2	0.75	509	0.075	106.054	155.178	1.463	97.18	103.78	47.2	62.9	248.1646968	108.3278191	213.1768301	127.5674869	PW3328T2	1.471428571	1.528571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.081	509	0	0	NA	2qD	chr2-13278254-180281766	2	1	1	0.64	2	NON-ABERRANT	1	0.253125	sgMsh3	colon
chr2	48898564	48898564	TA	T	ENSMUST00000063886.3	1	ENSMUSG00000052155	FS	K/X	435	Acvr2a	ENSMUST00000063886.3:c.1310del	ENSMUSP00000067305.3:p.Lys437ArgfsTer5	H-2-Kb	9	8	6	VVHKKRGLF	VVHKKKRPV	SMM	417.936	621.026	1.486	210	0.105	493.429	698.682	1.416	685.74	546.05	4295.7	2279.7	621.0263106	417.9362099	711.6230389	440.8085403	PW3328T2	-1.328571429	-1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1048	210	0	0	NA	2qC1.1	chr2-13278254-180281766	2	1	1	0.64	2	NON-ABERRANT	1	0.3275	sgMsh3	colon
chr1	20520247	20520247	C	T	ENSMUST00000088448.11	1	ENSMUSG00000043760	missense	G/R	1759	Pkhd1	ENSMUST00000088448.11:c.5275G>A	ENSMUSP00000085794.5:p.Gly1759Arg	H-2-Db	9	8	4	FSPRNISAA	FSPGNISAA	NetMHC	108.68	831.23	7.648	146	0.027	278.81	720.082	2.583	831.23	108.68	1271.6	385	606.2056782	258.0001747	608.9336864	299.6194483	PW3330T1	-0.328571429	-0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.037	146	0	0	NA	1qA4	chr1-6233869-193035620	2	2	0	0.62	2	NON-ABERRANT	1	0.119354839	sgMlh1	colon
chr4	85385911	85385911	CA	C	ENSMUST00000030212.14	1	ENSMUSG00000028488	FS	K/X	284	Sh3gl2	ENSMUST00000030212.14:c.852del	ENSMUSP00000030212.8:p.Lys284AsnfsTer61	H-2-Db	9	40	0	RAISSHSLI	NA	NetMHC	345.65	NA	NA	160	0.037	494.735	NA	NA	NA	345.65	NA	518.9	NA	512.4128356	NA	477.0567004	PW3330T1	1.028571429	1.028571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.042	160	0	0	NA	4qC4	chr4-5799947-156200568	2	1	1	0.62	2	NON-ABERRANT	1	0.135483871	sgMlh1	colon
chr2	26395083	26395083	C	T	ENSMUST00000076431.12	1	ENSMUSG00000026926	missense	S/F	440	Pmpca	ENSMUST00000076431.12:c.1319C>T	ENSMUSP00000075762.6:p.Ser440Phe	H-2-Kb	8	7	5	MNLEFRPV	MNLESRPV	NetMHC	14.92	1971.49	132.137	87	0.092	33.58	1491.711	44.423	1971.49	14.92	1856.9	28.9	727.3442335	38.25956254	1126.522836	51.96847826	PW3330T1	-0.328571429	-0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.099	87	0	0	NA	2qA3	chr2-3336174-181006567	2	1	1	0.62	2	NON-ABERRANT	1	0.319354839	sgMlh1	colon
chr10	111493423	111493423	AT	A	ENSMUST00000218828.1	1	ENSMUSG00000058799	FS	N/X	299	Nap1l1	ENSMUST00000218828.1:c.903del	ENSMUSP00000151972.1:p.Phe301LeufsTer34	H-2-Kb	8	8	6	SFFNFLLL	SFFNFFAP	SMM	9.544	80.675	8.453	278	0.032	13.992	126.313	9.028	131.36	14.93	212.6	17.6	80.67519058	9.544210297	121.2662646	13.05389154	PW3330T1	2.328571429	2.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.032	278	0	0	NA	10qD1	chr10-5234707-130453386	2	1	1	0.62	2	NON-ABERRANT	1	0.103225806	sgMlh1	colon
chr1	59702881	59702881	C	T	ENSMUST00000191142.6	1	ENSMUSG00000026020	missense	H/Y	190	Nop58	ENSMUST00000191142.6:c.568C>T	ENSMUSP00000140250.1:p.His190Tyr	H-2-Kb	8	8	4	YGWYFPEL	YGWHFPEL	NetMHCpan	28	41.7	1.489	136	0.051	88.814	113.379	1.277	96.52	39.99	41.7	28	164.7175978	165.8593656	130.2386842	137.6385219	PW3330T1	-0.157142857	-0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.062	136	0	0	NA	1qC2	chr1-6233869-193035620	2	2	0	0.62	2	NON-ABERRANT	1	0.2	sgMlh1	colon
chr15	98543573	98543573	AG	A	ENSMUST00000169707.7	1	ENSMUSG00000011960	FS	L/X	605	Ccnt1	ENSMUST00000169707.7:c.1813del	ENSMUSP00000126874.1:p.Leu605PhefsTer4	H-2-Kb	8	4	8	LNFPFPPF	LNFPFPPL	NetMHCpan	33.2	5.1	0.154	123	0.065	98.642	7.355	0.075	4.66	52.16	5.1	33.2	9.610367602	156.221211	11.55420317	145.1242539	PW3330T1	0.014285714	0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.065	123	0	0	NA	15qF1	chr15-3280572-103525164	2	1	1	0.62	2	NON-ABERRANT	1	0.209677419	sgMlh1	colon
chr1	161020105	161020105	G	A	ENSMUST00000162226.8	1	ENSMUSG00000043467	missense	A/V	444	Zbtb37	ENSMUST00000162226.8:c.1331C>T	ENSMUSP00000125253.2:p.Ala444Val	H-2-Kb	8	5	7	KSFPFQVI	KSFPFQAI	NetMHCpan	32.4	13.9	0.429	169	0.047	93.942	32.317	0.344	14.43	69.65	13.9	32.4	50.2041941	118.2333514	63.788149	143.4630303	PW3330T1	1.2	1.2	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.052	169	0	0	NA	1qH2.1	chr1-6233869-193035620	2	2	0	0.62	2	NON-ABERRANT	1	0.167741935	sgMlh1	colon
chr15	28384413	28384413	C	T	ENSMUST00000067048.7	5	ENSMUSG00000022262	missense	A/V	3101	Dnah5	ENSMUST00000067048.7:c.9302C>T	ENSMUSP00000069751.6:p.Ala3101Val	H-2-Kb	8	5	7	RALKFPVL	RALKFPAL	NetMHCpan	78.4	35.6	0.454	150	0.053	109.844	45.134	0.411	14.93	90.94	35.6	78.4	54.66885777	128.7478543	66.33458249	149.1900983	PW3330T1	1.557142857	1.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.061	150	0	0	NA	15qB1	chr15-3280572-103525164	2	1	1	0.62	2	NON-ABERRANT	1	0.196774194	sgMlh1	colon
chr4	85385911	85385911	CA	C	ENSMUST00000030212.14	1	ENSMUSG00000028488	FS	K/X	284	Sh3gl2	ENSMUST00000030212.14:c.852del	ENSMUSP00000030212.8:p.Lys284AsnfsTer61	H-2-Kb	8	43	0	SSHSLIRL	NA	NetMHC	115.71	NA	NA	160	0.037	138.135	NA	NA	NA	115.71	NA	177.9	NA	140.5206015	NA	135.7500506	PW3330T1	0.4	0.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.042	160	0	0	NA	4qC4	chr4-5799947-156200568	2	1	1	0.62	2	NON-ABERRANT	1	0.135483871	sgMlh1	colon
chr12	113948709	113948709	TA	T	ENSMUST00000103464.2	NA	ENSMUSG00000076655	FS	F/X	8	Ighv4-1	ENSMUST00000103464.2:c.24del	ENSMUSP00000100245.1:p.Phe8LeufsTer6	H-2-Kb	8	3	6	FGLIFLLL	FGLIFFIV	SMM	88.255	419.508	4.753	146	0.11	108.759	677.036	6.225	828.37	118.95	1552.4	193.3	419.5077612	88.25513833	525.7024488	98.56892043	PW3330T1	3.157142857	3.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1096	146	0	0	NA	12qF1	chr12-3252726-119173220	2	1	1	0.62	2	NON-ABERRANT	1	0.353548387	sgMlh1	colon
chr10	111493423	111493423	AT	A	ENSMUST00000218828.1	1	ENSMUSG00000058799	FS	N/X	299	Nap1l1	ENSMUST00000218828.1:c.903del	ENSMUSP00000151972.1:p.Phe301LeufsTer34	H-2-Kb	8	21	0	MAIWMMML	NA	NetMHC	125.29	NA	NA	278	0.032	214.942	NA	NA	NA	125.29	NA	180	NA	249.8848923	NA	323.3999884	PW3330T1	2.128571429	2.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.032	278	0	0	NA	10qD1	chr10-5234707-130453386	2	1	1	0.62	2	NON-ABERRANT	1	0.103225806	sgMlh1	colon
chr15	96350113	96350113	A	T	ENSMUST00000096250.4	5	ENSMUSG00000033237	missense	Q/H	135	Arid2	ENSMUST00000096250.4:c.405A>T	ENSMUSP00000093969.4:p.Gln135His	H-2-Kb	8	7	5	YNYQHHSV	YNYQQHSV	NetMHCpan	69.1	508.4	7.357	172	0.087	135.057	591.262	4.378	2126.29	192.38	508.4	69.1	396.0408646	113.172263	674.1243274	156.9422953	PW3330T1	-1.614285714	-1.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.097	172	0	0	NA	15qF1	chr15-3280572-103525164	2	1	1	0.62	2	NON-ABERRANT	1	0.312903226	sgMlh1	colon
chr13	55004517	55004517	AG	A	ENSMUST00000026994.13	1	ENSMUSG00000025876	FS	G/X	798	Unc5a	ENSMUST00000026994.13:c.2398del	ENSMUSP00000026994.7:p.Val800SerfsTer37	H-2-Kb	8	13	1	SQPWWAPV	NA	NetMHC	198.51	NA	NA	59	0.119	351.734	NA	NA	NA	198.51	NA	331.3	NA	372.1688324	NA	393.3145385	PW3330T1	-0.357142857	-0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.127	59	0	0	NA	13qB1	chr13-4065516-119495179	2	1	1	0.62	2	NON-ABERRANT	1	0.409677419	sgMlh1	colon
chr15	96350113	96350113	A	T	ENSMUST00000096250.4	5	ENSMUSG00000033237	missense	Q/H	135	Arid2	ENSMUST00000096250.4:c.405A>T	ENSMUSP00000093969.4:p.Gln135His	H-2-Kb	8	5	7	SSYNYQHH	SSYNYQQH	SMMPMBEC	123.806	158.76	1.282	172	0.087	321.962	477.266	1.482	594.17	373.69	1682.8	1268.8	360.3628392	270.2340064	158.7596015	123.8055176	PW3330T1	-2.4	-2.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.097	172	0	0	NA	15qF1	chr15-3280572-103525164	2	1	1	0.62	2	NON-ABERRANT	1	0.312903226	sgMlh1	colon
chr4	86385598	86385598	G	T	ENSMUST00000107178.8	5	ENSMUSG00000066113	missense	G/C	1340	Adamtsl1	ENSMUST00000107178.8:c.4018G>T	ENSMUSP00000102796.2:p.Gly1340Cys	H-2-Kb	8	5	7	VSFSDQCL	VSFSDQGL	SMMPMBEC	127.567	61.198	0.48	85	0.082	277.319	80.669	0.291	100.14	424.4	211.9	854.9	58.17548331	130.2386842	61.19839043	127.5674869	PW3330T1	0.071428571	0.128571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.078	85	0	0	NA	4qC4	chr4-5799947-156200568	2	1	1	0.62	2	NON-ABERRANT	1	0.251612903	sgMlh1	colon
chr4	85385911	85385911	CA	C	ENSMUST00000030212.14	1	ENSMUSG00000028488	FS	K/X	284	Sh3gl2	ENSMUST00000030212.14:c.852del	ENSMUSP00000030212.8:p.Lys284AsnfsTer61	H-2-Kb	8	61	0	ASLAFSPS	NA	SMM	90.728	NA	NA	160	0.037	280.109	NA	NA	NA	431.47	NA	931.9	NA	90.7277206	NA	128.7478543	PW3330T1	0.628571429	1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.042	160	0	0	NA	4qC4	chr4-5799947-156200568	2	1	1	0.62	2	NON-ABERRANT	1	0.135483871	sgMlh1	colon
chr13	55004517	55004517	AG	A	ENSMUST00000026994.13	1	ENSMUSG00000025876	FS	G/X	798	Unc5a	ENSMUST00000026994.13:c.2398del	ENSMUSP00000026994.7:p.Val800SerfsTer37	H-2-Kb	8	26	0	SSFGKRSL	NA	SMMPMBEC	250.461	NA	NA	59	0.119	256.539	NA	NA	NA	447.88	NA	260.3	NA	252.7784229	NA	250.4609364	PW3330T1	-0.542857143	-0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.127	59	0	0	NA	13qB1	chr13-4065516-119495179	2	1	1	0.62	2	NON-ABERRANT	1	0.409677419	sgMlh1	colon
chr2	85196056	85196056	AC	A	ENSMUST00000111601.1	5	ENSMUSG00000075224	FS	G/X	208	Lrrc55	ENSMUST00000111601.1:c.623del	ENSMUSP00000107228.1:p.Gly208ValfsTer14	H-2-Kb	8	9	3	IGVTHGYV	NA	SMMPMBEC	387.918	NA	NA	43	0.116	445.868	NA	NA	NA	503.29	NA	484.6	NA	407.1364636	NA	387.9180607	PW3330T1	0.342857143	0.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1163	43	0	0	NA	2qD	chr2-3336174-181006567	2	1	1	0.62	2	NON-ABERRANT	1	0.37516129	sgMlh1	colon
chr3	59336300	59336300	C	A	ENSMUST00000039419.11	5	ENSMUSG00000036334	missense	M/I	204	Igsf10	ENSMUST00000039419.11:c.612G>T	ENSMUSP00000037246.6:p.Met204Ile	H-2-Kb	8	11	1	IVSSMPNL	MVSSMPNL	NetMHCpan	304	978.5	3.219	107	0.065	415.197	943.934	2.273	2044.02	510.15	978.5	304	823.6448742	411.8508816	909.3686959	418.5429201	PW3330T1	0.457142857	0.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.069	107	0	0	NA	3qD	chr3-15331830-159911278	2	1	1	0.62	2	NON-ABERRANT	1	0.222580645	sgMlh1	colon
chr19	37608972	37608972	CA	C	ENSMUST00000066439.7	1	ENSMUSG00000053799	FS	Q/X	607	Exoc6	ENSMUST00000066439.7:c.1825del	ENSMUSP00000064332.6:p.Ile609LeufsTer25	H-2-Kb	8	13	1	LMNLFSWL	NA	SMMPMBEC	251.617	NA	NA	115	0.087	415.27	NA	NA	NA	791.06	NA	563.4	NA	267.1406633	NA	251.6170116	PW3330T1	1.014285714	1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.081	115	0	0	NA	19qC2	chr19-3902564-59274607	2	1	1	0.62	2	NON-ABERRANT	1	0.261290323	sgMlh1	colon
chr4	85385911	85385911	CA	C	ENSMUST00000030212.14	1	ENSMUSG00000028488	FS	K/X	284	Sh3gl2	ENSMUST00000030212.14:c.852del	ENSMUSP00000030212.8:p.Lys284AsnfsTer61	H-2-Kb	8	56	0	RGCFMASL	NA	NetMHCpan	336.1	NA	NA	160	0.037	403.934	NA	NA	NA	1237.53	NA	336.1	NA	432.2549746	NA	375.6124682	PW3330T1	1.657142857	1.657142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.042	160	0	0	NA	4qC4	chr4-5799947-156200568	2	1	1	0.62	2	NON-ABERRANT	1	0.135483871	sgMlh1	colon
chr10	111493423	111493423	AT	A	ENSMUST00000218828.1	1	ENSMUSG00000058799	FS	N/X	299	Nap1l1	ENSMUST00000218828.1:c.903del	ENSMUSP00000151972.1:p.Phe301LeufsTer34	H-2-Kb	9	8	6	SFFNFLLLL	SFFNFFAPP	NetMHC	34.18	153.38	4.487	278	0.032	40.397	122.845	3.041	153.38	34.18	206.4	35.7	50.24698412	45.09309038	92.31026548	62.69746764	PW3330T1	2.471428571	2.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.032	278	0	0	NA	10qD1	chr10-5234707-130453386	2	1	1	0.62	2	NON-ABERRANT	1	0.103225806	sgMlh1	colon
chr10	111493423	111493423	AT	A	ENSMUST00000218828.1	1	ENSMUSG00000058799	FS	N/X	299	Nap1l1	ENSMUST00000218828.1:c.903del	ENSMUSP00000151972.1:p.Phe301LeufsTer34	H-2-Kb	9	5	9	SNDSFFNFL	SNDSFFNFF	NetMHC	36.48	292.74	8.025	278	0.032	108.036	301.33	2.789	292.74	36.48	662.1	106.9	184.1238299	109.1716816	309.920283	179.1636906	PW3330T1	0.628571429	0.628571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.032	278	0	0	NA	10qD1	chr10-5234707-130453386	2	1	1	0.62	2	NON-ABERRANT	1	0.103225806	sgMlh1	colon
chr15	98543573	98543573	AG	A	ENSMUST00000169707.7	1	ENSMUSG00000011960	FS	L/X	605	Ccnt1	ENSMUST00000169707.7:c.1813del	ENSMUSP00000126874.1:p.Leu605PhefsTer4	H-2-Kb	9	4	8	LNFPFPPFL	LNFPFPPLP	NetMHCpan	20.4	4434.3	217.368	123	0.065	109.169	2677.64	24.527	6146.12	49.64	4434.3	20.4	424.7271271	168.6980257	920.9795777	208.0894201	PW3330T1	1.057142857	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.065	123	0	0	NA	15qF1	chr15-3280572-103525164	2	1	1	0.62	2	NON-ABERRANT	1	0.209677419	sgMlh1	colon
chr1	161020105	161020105	G	A	ENSMUST00000162226.8	1	ENSMUSG00000043467	missense	A/V	444	Zbtb37	ENSMUST00000162226.8:c.1331C>T	ENSMUSP00000125253.2:p.Ala444Val	H-2-Kb	9	5	7	KSFPFQVIL	KSFPFQAIL	NetMHCpan	28.3	13	0.459	169	0.047	106.427	61.03	0.573	13.39	56.14	13	28.3	108.6700833	156.7147954	140.6857143	190.6557905	PW3330T1	1.857142857	1.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.052	169	0	0	NA	1qH2.1	chr1-6233869-193035620	2	2	0	0.62	2	NON-ABERRANT	1	0.167741935	sgMlh1	colon
chr14	28969249	28969249	C	T	ENSMUST00000225985.1	NA	ENSMUSG00000021991	missense	A/T	40	Cacna2d3	ENSMUST00000225985.1:c.118G>A	ENSMUSP00000152967.1:p.Ala40Thr	H-2-Kb	9	8	4	SSCTFLFSL	SSCAFLFSL	NetMHCpan	58.9	66	1.121	136	0.066	123.777	145.513	1.176	71.62	63.37	66	58.9	246.0990856	219.8416627	219.4067579	184.183194	PW3330T1	2.028571429	2.028571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.08	136	0	0	NA	14qA3	chr14-3072210-123348696	2	1	1	0.62	2	NON-ABERRANT	1	0.258064516	sgMlh1	colon
chr2	28084838	28084838	G	A	ENSMUST00000028179.14	1	ENSMUSG00000026835	missense	A/V	7	Fcnb	ENSMUST00000028179.14:c.20C>T	ENSMUSP00000028179.8:p.Ala7Val	H-2-Kb	9	5	3	SAVLFVLTL	SAALFVLTL	NetMHC	72.19	149.05	2.065	95	0.337	164.949	206.375	1.251	149.05	72.19	93.3	92.7	263.6999212	237.1974414	368.3409467	285.9235978	PW3330T1	3.128571429	3.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.347	95	0	0	NA	2qA3	chr2-3336174-181006567	2	1	1	0.62	2	NON-ABERRANT	1	1	sgMlh1	colon
chr10	111493423	111493423	AT	A	ENSMUST00000218828.1	1	ENSMUSG00000058799	FS	N/X	299	Nap1l1	ENSMUST00000218828.1:c.903del	ENSMUSP00000151972.1:p.Phe301LeufsTer34	H-2-Kb	9	7	7	DSFFNFLLL	DSFFNFFAP	NetMHCpan	115.3	5621.8	48.758	278	0.032	170.626	3712.928	21.761	8890.29	179.03	5621.8	115.3	885.3398242	162.2220929	1804.05594	205.7074402	PW3330T1	2.328571429	2.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.032	278	0	0	NA	10qD1	chr10-5234707-130453386	2	1	1	0.62	2	NON-ABERRANT	1	0.103225806	sgMlh1	colon
chr15	96350113	96350113	A	T	ENSMUST00000096250.4	5	ENSMUSG00000033237	missense	Q/H	135	Arid2	ENSMUST00000096250.4:c.405A>T	ENSMUSP00000093969.4:p.Gln135His	H-2-Kb	9	5	7	SSYNYQHHS	SSYNYQQHS	SMM	164.858	129.452	0.785	172	0.087	241.356	168.532	0.698	105.06	217.71	434.5	386.1	129.4523683	164.8579898	207.6108278	265.0025177	PW3330T1	-2.4	-2.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.097	172	0	0	NA	15qF1	chr15-3280572-103525164	2	1	1	0.62	2	NON-ABERRANT	1	0.312903226	sgMlh1	colon
chr17	20029855	20029855	G	A	ENSMUST00000168050.2	5	ENSMUSG00000090315	missense	A/V	718	Vmn2r104	ENSMUST00000168050.2:c.2153C>T	ENSMUSP00000129895.1:p.Ala718Val	H-2-Kb	9	8	4	IWMVTSPPF	IWMATSPPF	SMM	162.971	257.697	1.581	475	0.029	317.902	439.805	1.383	319.53	227.25	960.3	872.7	257.6973782	162.970876	560.0799166	408.5545015	PW3330T1	0.6	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.034	475	0	0	NA	17qA3.2	chr17-3545491-89046578	2	1	1	0.62	2	NON-ABERRANT	1	0.109677419	sgMlh1	colon
chr2	25243987	25243987	TG	T	ENSMUST00000114355.1	NA	ENSMUSG00000044628	FS	W/X	231	Rnf208	ENSMUST00000114355.1:c.698del	ENSMUSP00000109995.1:p.Gly233ValfsTer60	H-2-Kb	9	61	0	SSGNWLCPV	NA	NetMHC	227.65	NA	NA	58	0.103	490.55	NA	NA	NA	227.65	NA	987.3	NA	488.776143	NA	492.3228579	PW3330T1	0.585714286	0.585714286	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.124	58	0	0	NA	2qA3	chr2-3336174-181006567	2	1	1	0.62	2	NON-ABERRANT	1	0.4	sgMlh1	colon
chr17	35855167	35855167	G	A	ENSMUST00000082337.12	5	ENSMUSG00000061607	missense	C/Y	1639	Mdc1	ENSMUST00000082337.12:c.4916G>A	ENSMUSP00000080949.6:p.Cys1639Tyr	H-2-Kb	9	9	3	ISYCGGTFL	ISCCGGTFL	NetMHCpan	78.7	4196.6	53.324	142	0.035	291.701	4704.934	16.129	7495.06	245.92	4196.6	78.7	5213.267383	457.2039776	2422.423104	337.4815227	PW3330T1	0.9	0.9	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.038	142	0	0	NA	17qB1	chr17-3545491-89046578	2	1	1	0.62	2	NON-ABERRANT	1	0.122580645	sgMlh1	colon
chr10	121615116	121615116	CA	C	ENSMUST00000039810.7	5	ENSMUSG00000034667	FS	F/X	126	Xpot	ENSMUST00000039810.7:c.378del	ENSMUSP00000043488.7:p.Phe126LeufsTer9	H-2-Kb	9	8	4	KFFLTSSQL	NA	NetMHC	253.95	NA	NA	130	0.085	400.763	NA	NA	NA	253.95	NA	453.1	NA	348.4255546	NA	544.816184	PW3330T1	0.657142857	0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0846	130	0	0	NA	10qD2	chr10-5234707-130453386	2	1	1	0.62	2	NON-ABERRANT	1	0.272903226	sgMlh1	colon
chr12	113948709	113948709	TA	T	ENSMUST00000103464.2	NA	ENSMUSG00000076655	FS	F/X	8	Ighv4-1	ENSMUST00000103464.2:c.24del	ENSMUSP00000100245.1:p.Phe8LeufsTer6	H-2-Kb	9	3	6	FGLIFLLLL	FGLIFFIVA	NetMHC	260.98	4010.33	15.366	146	0.11	283.622	2982.582	10.516	4010.33	260.98	5267.5	972.6	1954.834522	269.2216614	1442.945739	298.0231495	PW3330T1	3.757142857	3.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1096	146	0	0	NA	12qF1	chr12-3252726-119173220	2	1	1	0.62	2	NON-ABERRANT	1	0.353548387	sgMlh1	colon
chr13	27098686	27098686	GA	G	ENSMUST00000225330.1	NA	ENSMUSG00000057170	FS	K/X	137	Prl3d1	ENSMUST00000225330.1:c.414del	ENSMUSP00000152890.1:p.Ala139LeufsTer10	H-2-Kb	9	8	6	SMGKKLLTL	SMGKKAADI	SMM	265.528	1667.67	6.281	390	0.026	336.338	2592.885	7.709	3518.1	369.81	11640.1	1318.1	1667.669554	265.5278017	1433.01257	302.8656361	PW3330T1	0.357142857	0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.025	390	0	0	NA	13qA3.1	chr13-4065516-119495179	2	1	1	0.62	2	NON-ABERRANT	1	0.080645161	sgMlh1	colon
chr10	111493423	111493423	AT	A	ENSMUST00000218828.1	1	ENSMUSG00000058799	FS	N/X	299	Nap1l1	ENSMUST00000218828.1:c.903del	ENSMUSP00000151972.1:p.Phe301LeufsTer34	H-2-Kb	9	10	4	FNFLLLLKF	NA	SMMPMBEC	311.351	NA	NA	278	0.032	373.014	NA	NA	NA	429.72	NA	2381.2	NA	316.3078717	NA	311.3508101	PW3330T1	2.414285714	2.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.032	278	0	0	NA	10qD1	chr10-5234707-130453386	2	1	1	0.62	2	NON-ABERRANT	1	0.103225806	sgMlh1	colon
chr10	111493423	111493423	AT	A	ENSMUST00000218828.1	1	ENSMUSG00000058799	FS	N/X	299	Nap1l1	ENSMUST00000218828.1:c.903del	ENSMUSP00000151972.1:p.Phe301LeufsTer34	H-2-Kb	9	20	0	RMAIWMMML	NA	SMM	430.636	NA	NA	278	0.032	478.937	NA	NA	NA	492.02	NA	507	NA	430.63567	NA	465.8541836	PW3330T1	2.128571429	2.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.032	278	0	0	NA	10qD1	chr10-5234707-130453386	2	1	1	0.62	2	NON-ABERRANT	1	0.103225806	sgMlh1	colon
chr10	111493423	111493423	AT	A	ENSMUST00000218828.1	1	ENSMUSG00000058799	FS	N/X	299	Nap1l1	ENSMUST00000218828.1:c.903del	ENSMUSP00000151972.1:p.Phe301LeufsTer34	H-2-Kb	9	25	0	MMMLRRYWL	NA	SMM	143.255	NA	NA	278	0.032	349.422	NA	NA	NA	497.82	NA	535.2	NA	143.2550696	NA	201.0249672	PW3330T1	-0.242857143	-0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.032	278	0	0	NA	10qD1	chr10-5234707-130453386	2	1	1	0.62	2	NON-ABERRANT	1	0.103225806	sgMlh1	colon
chr10	111493423	111493423	AT	A	ENSMUST00000218828.1	1	ENSMUSG00000058799	FS	N/X	299	Nap1l1	ENSMUST00000218828.1:c.903del	ENSMUSP00000151972.1:p.Phe301LeufsTer34	H-2-Kb	9	13	1	LLLLKFLRM	NA	SMMPMBEC	376.054	NA	NA	278	0.032	452.956	NA	NA	NA	510.6	NA	452.9	NA	453.0123063	NA	376.053816	PW3330T1	1.1	2.557142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.032	278	0	0	NA	10qD1	chr10-5234707-130453386	2	1	1	0.62	2	NON-ABERRANT	1	0.103225806	sgMlh1	colon
chr1	59702881	59702881	C	T	ENSMUST00000191142.6	1	ENSMUSG00000026020	missense	H/Y	190	Nop58	ENSMUST00000191142.6:c.568C>T	ENSMUSP00000140250.1:p.His190Tyr	H-2-Kb	9	7	5	WYGWYFPEL	WYGWHFPEL	SMMPMBEC	248.456	312.069	1.256	136	0.051	384.323	500.11	1.301	637.05	550.32	993.3	477.5	363.1700284	291.1454451	312.0685478	248.4562923	PW3330T1	-0.157142857	-0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.062	136	0	0	NA	1qC2	chr1-6233869-193035620	2	2	0	0.62	2	NON-ABERRANT	1	0.2	sgMlh1	colon
chr10	21364679	21364679	T	G	ENSMUST00000219915.1	1	ENSMUSG00000019977	missense	L/R	599	Hbs1l	ENSMUST00000219915.1:c.1796T>G	ENSMUSP00000151689.1:p.Leu599Arg	H-2-Kb	9	4	8	ITKGFPVRL	ITKGFPVLL	NetMHCpan	164.7	294.2	1.786	195	0.103	455.005	494.024	1.086	1216.02	621.55	294.2	164.7	535.9323836	522.5285205	452.1161284	387.4806325	PW3330T1	0.057142857	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.112	195	0	0	NA	10qA3	chr10-5234707-130453386	2	1	1	0.62	2	NON-ABERRANT	1	0.361290323	sgMlh1	colon
chr2	168189326	168189326	AT	A	ENSMUST00000088001.5	1	ENSMUSG00000051149	FS	I/X	22	Adnp	ENSMUST00000088001.5:c.64del	ENSMUSP00000085316.5:p.Ile22TyrfsTer14	H-2-Kb	9	7	5	TVKKYLVTL	TVKKILSDI	NetMHCpan	174.1	10867	62.418	240	0.196	471.958	10005.224	21.199	14004.36	639.61	10867	174.1	9143.448014	557.3268932	5562.243536	386.5894518	PW3330T1	0.285714286	0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.192	240	0	0	NA	2qH3	chr2-3336174-181006567	2	1	1	0.62	2	NON-ABERRANT	1	0.619354839	sgMlh1	colon
chr4	43835735	43835735	TA	T	ENSMUST00000214281.1	5	ENSMUSG00000111611	FS	Y/X	252	Olfr157	ENSMUST00000214281.1:c.754del	ENSMUSP00000149336.1:p.Tyr252MetfsTer36	H-2-Kb	9	6	6	VVIIFMGPS	VVIIFYGTI	SMM	182.016	52.373	0.288	240	0.037	454.822	34.74	0.076	15.21	676.7	21.7	1698	52.37330732	182.0161819	47.78042407	232.9431801	PW3330T1	1.557142857	3.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.034	240	0	0	NA	4qB1	chr4-5799947-156200568	2	1	1	0.62	2	NON-ABERRANT	1	0.109677419	sgMlh1	colon
chr9	80136750	80136750	GA	G	ENSMUST00000165607.8	1	ENSMUSG00000034252	FS	K/X	888	Senp6	ENSMUST00000165607.8:c.2672del	ENSMUSP00000126777.2:p.Asn891IlefsTer44	H-2-Db	9	42	0	ASGMNASVL	NA	NetMHC	36.8	NA	NA	129	0.209	141.593	NA	NA	NA	36.8	NA	75.9	NA	216.0827011	NA	207.2860138	PW3330T1	1	1	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2093	129	0	0	NA	9qE1	chr9-3342997-124108155	2	1	1	0.62	2	NON-ABERRANT	1	0.67516129	sgMlh1	colon
chr6	125189813	125189813	T	C	ENSMUST00000043848.10	1	ENSMUSG00000038252	missense	Y/C	26	Ncapd2	ENSMUST00000043848.10:c.77A>G	ENSMUSP00000042260.4:p.Tyr26Cys	H-2-Db	9	5	7	SGGVNQCVV	SGGVNQYVV	NetMHC	134.72	41.97	0.312	82	0.341	437.794	295.249	0.674	41.97	134.72	180.7	369.1	422.2989484	560.5572837	409.7981561	506.4889793	PW3330T1	1.1	1.1	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.361	82	0	0	NA	6qF2	chr6-3483595-146858806	2	1	1	0.62	2	NON-ABERRANT	1	1	sgMlh1	colon
chr6	83404136	83404136	GT	G	ENSMUST00000186548.6	1	ENSMUSG00000034832	FS	N/X	350	Tet3	ENSMUST00000186548.6:c.1049del	ENSMUSP00000139630.1:p.Asn350ThrfsTer282	H-2-Kb	8	124	0	SSYWAAPV	NA	NetMHC	5.22	NA	NA	75	0.107	14.914	NA	NA	NA	5.22	NA	12.3	NA	17.52830817	NA	22.58083514	PW3330T1	0.457142857	0.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.124	75	0	0	NA	6qC3	chr6-3483595-146858806	2	1	1	0.62	2	NON-ABERRANT	1	0.4	sgMlh1	colon
chrX	75394352	75394352	AT	A	ENSMUST00000033541.4	1	ENSMUSG00000031198	FS	F/X	141	Fundc2	ENSMUST00000033541.4:c.426del	ENSMUSP00000033541.4:p.Phe142LeufsTer34	H-2-Kb	8	27	0	LFYFYSCL	NA	SMM	20.218	NA	NA	286	0.056	26.916	NA	NA	NA	37.5	NA	33	NA	20.21808416	NA	20.8324333	PW3330T1	1.214285714	1.214285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.053	286	0	0	NA	XqA7.3	chrX-7946841-169987429	2	2	0	0.62	2	NON-ABERRANT	1	0.170967742	sgMlh1	colon
chr7	142083314	142083314	C	T	ENSMUST00000039926.9	1	ENSMUSG00000037887	missense	A/T	259	Dusp8	ENSMUST00000039926.9:c.775G>A	ENSMUSP00000049414.3:p.Ala259Thr	H-2-Kb	8	10	2	ITYIMKTM	IAYIMKTM	NetMHCpan	35.8	52.2	1.458	192	0.094	107.492	149.077	1.387	70.78	71.19	52.2	35.8	235.9065504	152.6651821	227.3735801	143.7937467	PW3330T1	0.242857143	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.102	192	0	0	NA	7qF5	chr7-4925998-143497059	2	1	1	0.62	2	NON-ABERRANT	1	0.329032258	sgMlh1	colon
chrX	36403451	36403451	GA	G	ENSMUST00000115253.2	5	ENSMUSG00000079642	FS	E/X	269	Gm6268	ENSMUST00000115253.2:c.813del	ENSMUSP00000110908.2:p.Gly272GlufsTer58	H-2-Kb	8	60	0	LTFTQFML	NA	NetMHCpan	66	NA	NA	150	0.08	108.125	NA	NA	NA	85.41	NA	66	NA	130.8398387	NA	159.4924025	PW3330T1	0.914285714	0.914285714	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.08	150	0	0	NA	XqA3.3	chrX-7946841-169987429	2	2	0	0.62	2	NON-ABERRANT	1	0.258064516	sgMlh1	colon
chr6	48467840	48467840	TC	T	ENSMUST00000169350.8	5	ENSMUSG00000029797	FS	S/X	2227	Sspo	ENSMUST00000169350.8:c.6683del	ENSMUSP00000131401.2:p.Pro2228ArgfsTer54	H-2-Kb	8	51	0	VGPFMQAL	NA	NetMHCpan	109.6	NA	NA	115	0.035	270.47	NA	NA	NA	222.71	NA	109.6	NA	318.2291802	NA	468.5328006	PW3330T1	0.685714286	0.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.045	115	0	0	NA	6qB2.3	chr6-3483595-146858806	2	1	1	0.62	2	NON-ABERRANT	1	0.14516129	sgMlh1	colon
chr6	83404136	83404136	GT	G	ENSMUST00000186548.6	1	ENSMUSG00000034832	FS	N/X	350	Tet3	ENSMUST00000186548.6:c.1049del	ENSMUSP00000139630.1:p.Asn350ThrfsTer282	H-2-Kb	8	280	0	SSCLLGRL	NA	SMMPMBEC	93.916	NA	NA	75	0.107	166.302	NA	NA	NA	225.27	NA	485.8	NA	107.3346637	NA	93.91608928	PW3330T1	1.171428571	1.171428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.124	75	0	0	NA	6qC3	chr6-3483595-146858806	2	1	1	0.62	2	NON-ABERRANT	1	0.4	sgMlh1	colon
chr6	83404136	83404136	GT	G	ENSMUST00000186548.6	1	ENSMUSG00000034832	FS	N/X	350	Tet3	ENSMUST00000186548.6:c.1049del	ENSMUSP00000139630.1:p.Asn350ThrfsTer282	H-2-Kb	8	134	0	SSQYSSGL	NA	NetMHC	273.61	NA	NA	75	0.107	451.353	NA	NA	NA	273.61	NA	461.4	NA	441.3061706	NA	616.2259741	PW3330T1	-0.542857143	-0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.124	75	0	0	NA	6qC3	chr6-3483595-146858806	2	1	1	0.62	2	NON-ABERRANT	1	0.4	sgMlh1	colon
chr9	65133713	65133713	GC	G	ENSMUST00000035499.4	1	ENSMUSG00000032816	FS	P/X	1009	Igdcc4	ENSMUST00000035499.4:c.3030del	ENSMUSP00000045387.3:p.Ser1011ValfsTer80	H-2-Kb	8	40	0	TRLKYTAL	NA	SMM	230.537	NA	NA	39	0.103	288.243	NA	NA	NA	343.28	NA	1029.2	NA	230.5366617	NA	233.2061504	PW3330T1	-0.142857143	-0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1026	39	0	0	NA	9qC	chr9-3342997-124108155	2	1	1	0.62	2	NON-ABERRANT	1	0.330967742	sgMlh1	colon
chr5	110295302	110295302	AT	A	ENSMUST00000007296.11	1	ENSMUSG00000007080	FS	D/X	365	Pole	ENSMUST00000007296.11:c.1101del	ENSMUSP00000007296.5:p.Phe367LeufsTer21	H-2-Kb	8	6	8	VTYNGDFL	VTYNGDFF	SMM	123.806	2012.519	16.255	218	0.046	216.372	1890.784	8.739	4491.02	396.5	1357.4	291.9	2012.51905	123.8055176	1769.049561	140.8445349	PW3330T1	-0.4	-0.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.05	218	0	0	NA	5qF	chr5-5457389-151648188	2	1	1	0.62	2	NON-ABERRANT	1	0.161290323	sgMlh1	colon
chr7	102494423	102494423	G	T	ENSMUST00000216116.2	3	ENSMUSG00000044824	missense	N/K	117	Olfr545	ENSMUST00000216116.2:c.351C>A	ENSMUSP00000150232.1:p.Asn117Lys	H-2-Kb	8	11	1	KILLVMAL	NILLVMAL	SMM	226.851	680.362	2.999	325	0.052	370.668	1791.818	4.834	2672.17	426.75	2797.8	796.4	680.361923	226.8506354	911.4650073	314.5864409	PW3330T1	3.4	3.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.051	325	0	0	NA	7qE3	chr7-4925998-143497059	2	1	1	0.62	2	NON-ABERRANT	1	0.164516129	sgMlh1	colon
chr6	48449165	48449165	TG	T	ENSMUST00000169350.8	5	ENSMUSG00000029797	FS	W/X	98	Sspo	ENSMUST00000169350.8:c.299del	ENSMUSP00000131401.2:p.Gly100GlufsTer26	H-2-Kb	8	30	0	LSHGIANL	NA	NetMHCpan	288.5	NA	NA	129	0.07	428.705	NA	NA	NA	505.25	NA	288.5	NA	547.948825	NA	352.1599796	PW3330T1	0.314285714	0.314285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.076	129	0	0	NA	6qB2.3	chr6-3483595-146858806	2	1	1	0.62	2	NON-ABERRANT	1	0.24516129	sgMlh1	colon
chr6	83404136	83404136	GT	G	ENSMUST00000186548.6	1	ENSMUSG00000034832	FS	N/X	350	Tet3	ENSMUST00000186548.6:c.1049del	ENSMUSP00000139630.1:p.Asn350ThrfsTer282	H-2-Kb	8	164	0	LLFLRGRL	NA	NetMHCpan	253.1	NA	NA	75	0.107	463.941	NA	NA	NA	547.92	NA	253.1	NA	623.3615346	NA	379.9618556	PW3330T1	0.685714286	0.685714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.124	75	0	0	NA	6qC3	chr6-3483595-146858806	2	1	1	0.62	2	NON-ABERRANT	1	0.4	sgMlh1	colon
chrX	75394352	75394352	AT	A	ENSMUST00000033541.4	1	ENSMUSG00000031198	FS	F/X	141	Fundc2	ENSMUST00000033541.4:c.426del	ENSMUSP00000033541.4:p.Phe142LeufsTer34	H-2-Kb	8	29	0	YFYSCLFL	NA	SMM	148.847	NA	NA	286	0.056	362.422	NA	NA	NA	554.73	NA	876.9	NA	148.8469706	NA	170.1139779	PW3330T1	1.942857143	1.942857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.053	286	0	0	NA	XqA7.3	chrX-7946841-169987429	2	2	0	0.62	2	NON-ABERRANT	1	0.170967742	sgMlh1	colon
chrX	75394352	75394352	AT	A	ENSMUST00000033541.4	1	ENSMUSG00000031198	FS	F/X	141	Fundc2	ENSMUST00000033541.4:c.426del	ENSMUSP00000033541.4:p.Phe142LeufsTer34	H-2-Kb	8	26	0	SLFYFYSC	NA	SMM	262.869	NA	NA	286	0.056	311.184	NA	NA	NA	643.06	NA	334.8	NA	262.8693795	NA	287.5676312	PW3330T1	1.214285714	1.214285714	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.053	286	0	0	NA	XqA7.3	chrX-7946841-169987429	2	2	0	0.62	2	NON-ABERRANT	1	0.170967742	sgMlh1	colon
chrX	75394352	75394352	AT	A	ENSMUST00000033541.4	1	ENSMUSG00000031198	FS	F/X	141	Fundc2	ENSMUST00000033541.4:c.426del	ENSMUSP00000033541.4:p.Phe142LeufsTer34	H-2-Kb	8	25	0	TSLFYFYS	NA	SMM	124.951	NA	NA	286	0.056	384.856	NA	NA	NA	1992.98	NA	592.4	NA	124.9510759	NA	177.3127641	PW3330T1	0.742857143	0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.053	286	0	0	NA	XqA7.3	chrX-7946841-169987429	2	2	0	0.62	2	NON-ABERRANT	1	0.170967742	sgMlh1	colon
chrX	75394352	75394352	AT	A	ENSMUST00000033541.4	1	ENSMUSG00000031198	FS	F/X	141	Fundc2	ENSMUST00000033541.4:c.426del	ENSMUSP00000033541.4:p.Phe142LeufsTer34	H-2-Kb	9	26	0	SLFYFYSCL	NA	NetMHCpan	9.4	NA	NA	286	0.056	23.992	NA	NA	NA	9.78	NA	9.4	NA	38.20410236	NA	39.10659467	PW3330T1	1.214285714	1.214285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.053	286	0	0	NA	XqA7.3	chrX-7946841-169987429	2	2	0	0.62	2	NON-ABERRANT	1	0.170967742	sgMlh1	colon
chr9	65133713	65133713	GC	G	ENSMUST00000035499.4	1	ENSMUSG00000032816	FS	P/X	1009	Igdcc4	ENSMUST00000035499.4:c.3030del	ENSMUSP00000045387.3:p.Ser1011ValfsTer80	H-2-Kb	9	39	0	KTRLKYTAL	NA	NetMHC	66.87	NA	NA	39	0.103	199.782	NA	NA	NA	66.87	NA	238.7	NA	191.4740838	NA	208.0894201	PW3330T1	-0.142857143	-0.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1026	39	0	0	NA	9qC	chr9-3342997-124108155	2	1	1	0.62	2	NON-ABERRANT	1	0.330967742	sgMlh1	colon
chr6	83404136	83404136	GT	G	ENSMUST00000186548.6	1	ENSMUSG00000034832	FS	N/X	350	Tet3	ENSMUST00000186548.6:c.1049del	ENSMUSP00000139630.1:p.Asn350ThrfsTer282	H-2-Kb	9	91	0	LSFLKRGAL	NA	NetMHC	68.39	NA	NA	75	0.107	98.175	NA	NA	NA	68.39	NA	74.1	NA	141.6152424	NA	122.2503187	PW3330T1	0.485714286	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.124	75	0	0	NA	6qC3	chr6-3483595-146858806	2	1	1	0.62	2	NON-ABERRANT	1	0.4	sgMlh1	colon
chrX	119928120	119928120	G	A	ENSMUST00000040961.2	1	ENSMUSG00000034732	missense	R/H	44	Pabpc5	ENSMUST00000040961.2:c.131G>A	ENSMUSP00000047756.2:p.Arg44His	H-2-Kb	9	7	5	AGPLHFTRI	AGPLRFTRI	NetMHCpan	70.3	150.2	2.137	104	0.058	287.574	301.158	1.047	90.75	78.27	150.2	70.3	552.2172896	571.6234016	452.1161284	496.8782653	PW3330T1	0.157142857	0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.071	104	0	0	NA	XqE1	chrX-7946841-169987429	2	2	0	0.62	2	NON-ABERRANT	1	0.229032258	sgMlh1	colon
chr7	127752233	127752233	CG	C	ENSMUST00000033081.13	1	ENSMUSG00000030811	FS	R/X	338	Fbxl19	ENSMUST00000033081.13:c.1016del	ENSMUSP00000033081.7:p.Gly339AlafsTer87	H-2-Kb	9	81	0	PGFVFSSTL	NA	SMM	164.101	NA	NA	21	0.143	176.45	NA	NA	NA	170.8	NA	182.1	NA	164.1005362	NA	288.5692163	PW3330T1	1.614285714	1.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1429	21	0	0	NA	7qF3	chr7-4925998-143497059	2	1	1	0.62	2	NON-ABERRANT	1	0.460967742	sgMlh1	colon
chr6	83404136	83404136	GT	G	ENSMUST00000186548.6	1	ENSMUSG00000034832	FS	N/X	350	Tet3	ENSMUST00000186548.6:c.1049del	ENSMUSP00000139630.1:p.Asn350ThrfsTer282	H-2-Kb	9	133	0	TSSQYSSGL	NA	NetMHC	191.69	NA	NA	75	0.107	396.326	NA	NA	NA	191.69	NA	316.1	NA	476.5516746	NA	504.9518876	PW3330T1	-0.542857143	-0.542857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.124	75	0	0	NA	6qC3	chr6-3483595-146858806	2	1	1	0.62	2	NON-ABERRANT	1	0.4	sgMlh1	colon
chrX	75394352	75394352	AT	A	ENSMUST00000033541.4	1	ENSMUSG00000031198	FS	F/X	141	Fundc2	ENSMUST00000033541.4:c.426del	ENSMUSP00000033541.4:p.Phe142LeufsTer34	H-2-Kb	9	27	0	LFYFYSCLF	NA	SMM	95.085	NA	NA	286	0.056	172.562	NA	NA	NA	210.46	NA	461.1	NA	95.08455975	NA	134.6635317	PW3330T1	1.214285714	1.214285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.053	286	0	0	NA	XqA7.3	chrX-7946841-169987429	2	2	0	0.62	2	NON-ABERRANT	1	0.170967742	sgMlh1	colon
chr9	80136750	80136750	GA	G	ENSMUST00000165607.8	1	ENSMUSG00000034252	FS	K/X	888	Senp6	ENSMUST00000165607.8:c.2672del	ENSMUSP00000126777.2:p.Asn891IlefsTer44	H-2-Kb	9	47	0	ASVLYIIQM	NA	NetMHC	227.71	NA	NA	129	0.209	259.534	NA	NA	NA	227.71	NA	259.5	NA	350.0338139	NA	259.5673122	PW3330T1	2.014285714	2.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.2093	129	0	0	NA	9qE1	chr9-3342997-124108155	2	1	1	0.62	2	NON-ABERRANT	1	0.67516129	sgMlh1	colon
chr7	102494423	102494423	G	T	ENSMUST00000216116.2	3	ENSMUSG00000044824	missense	N/K	117	Olfr545	ENSMUST00000216116.2:c.351C>A	ENSMUSP00000150232.1:p.Asn117Lys	H-2-Kb	9	6	6	VSMDCKILL	VSMDCNILL	SMM	260.082	321.447	1.236	325	0.052	273.815	375.344	1.371	429.24	277.7	791	585.7	321.4474612	260.0818226	289.2344371	269.9292823	PW3330T1	1.3	1.3	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.051	325	0	0	NA	7qE3	chr7-4925998-143497059	2	1	1	0.62	2	NON-ABERRANT	1	0.164516129	sgMlh1	colon
chr6	48467840	48467840	TC	T	ENSMUST00000169350.8	5	ENSMUSG00000029797	FS	S/X	2227	Sspo	ENSMUST00000169350.8:c.6683del	ENSMUSP00000131401.2:p.Pro2228ArgfsTer54	H-2-Kb	9	36	0	VMVLWTVTM	NA	SMM	125.635	NA	NA	115	0.035	208.378	NA	NA	NA	295.14	NA	269.1	NA	125.6348137	NA	147.6556263	PW3330T1	1.685714286	2.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.045	115	0	0	NA	6qB2.3	chr6-3483595-146858806	2	1	1	0.62	2	NON-ABERRANT	1	0.14516129	sgMlh1	colon
chrX	75394352	75394352	AT	A	ENSMUST00000033541.4	1	ENSMUSG00000031198	FS	F/X	141	Fundc2	ENSMUST00000033541.4:c.426del	ENSMUSP00000033541.4:p.Phe142LeufsTer34	H-2-Kb	9	22	0	KNFTSLFYF	NA	NetMHC	308.7	NA	NA	286	0.056	442.478	NA	NA	NA	308.7	NA	430.9	NA	454.0566075	NA	579.7623384	PW3330T1	1.342857143	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.053	286	0	0	NA	XqA7.3	chrX-7946841-169987429	2	2	0	0.62	2	NON-ABERRANT	1	0.170967742	sgMlh1	colon
chrX	75394352	75394352	AT	A	ENSMUST00000033541.4	1	ENSMUSG00000031198	FS	F/X	141	Fundc2	ENSMUST00000033541.4:c.426del	ENSMUSP00000033541.4:p.Phe142LeufsTer34	H-2-Kb	9	25	0	TSLFYFYSC	NA	NetMHCpan	284.1	NA	NA	286	0.056	366.425	NA	NA	NA	403.05	NA	284.1	NA	516.547186	NA	329.7995054	PW3330T1	1.214285714	1.214285714	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.053	286	0	0	NA	XqA7.3	chrX-7946841-169987429	2	2	0	0.62	2	NON-ABERRANT	1	0.170967742	sgMlh1	colon
chr2	85399675	85399675	T	G	ENSMUST00000214895.2	3	ENSMUSG00000075221	missense	N/T	286	Olfr992	ENSMUST00000214895.2:c.857A>C	ENSMUSP00000149333.1:p.Asn286Thr	H-2-Db	9	5	7	IMIPMLTPL	IMIPMLNPL	SMM	150.183	354.503	2.36	143	0.063	187.268	378.552	2.021	457.83	257.56	402.6	214	354.5030696	150.1827319	332.3303462	160.5350989	PW3330T2	1.442857143	2.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.062	143	0	0	NA	2qD	chr2-4992194-180717794	2	1	1	0.58	2	NON-ABERRANT	1	0.213793103	sgMlh1	colon
chr13	49662217	49662217	TA	T	ENSMUST00000222197.1	1	ENSMUSG00000021392	FS	L/X	600	Nol8	ENSMUST00000222197.1:c.1803del	ENSMUSP00000152536.1:p.Lys601AsnfsTer9	H-2-Db	9	9	4	SSLNMKITI	NA	SMM	238.024	NA	NA	168	0.042	325.549	NA	NA	NA	396.08	NA	676.1	NA	238.0235894	NA	255.0175094	PW3330T2	0.942857143	0.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.042	168	0	0	NA	13qA5	chr13-3556909-119495179	2	1	1	0.58	2	NON-ABERRANT	1	0.144827586	sgMlh1	colon
chr1	58904023	58904023	T	G	ENSMUST00000027186.11	1	ENSMUSG00000026028	missense	K/N	741	Trak2	ENSMUST00000027186.11:c.2223A>C	ENSMUSP00000027186.5:p.Lys741Asn	H-2-Kb	8	5	7	STRSLANL	STRSLAKL	NetMHC	33.89	264.65	7.809	114	0.114	50.112	229.088	4.572	264.65	33.89	687.6	179.6	179.3659491	44.53895263	193.5263029	55.68522772	PW3330T2	-0.014285714	-0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.102	114	0	0	NA	1qC1.3	chr1-4867294-194959842	2	2	0	0.58	2	NON-ABERRANT	1	0.351724138	sgMlh1	colon
chr2	112849606	112849606	TA	T	ENSMUST00000208290.1	5	ENSMUSG00000057378	FS	Y/X	1213	Ryr3	ENSMUST00000208290.1:c.3637del	ENSMUSP00000147250.1:p.Tyr1213IlefsTer15	H-2-Kb	8	6	6	STFKFIPC	STFKFYTM	SMM	42.339	18.27	0.432	133	0.053	52.06	11.78	0.226	5.29	69.06	4.6	53.8	18.27006111	42.33894187	20.97683683	50.31992672	PW3330T2	0.914285714	0.914285714	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.065	133	0	0	NA	2qE3	chr2-4992194-180717794	2	1	1	0.58	2	NON-ABERRANT	1	0.224137931	sgMlh1	colon
chr1	135167102	135167102	G	T	ENSMUST00000027682.8	1	ENSMUSG00000026424	missense	L/I	135	Gpr37l1	ENSMUST00000027682.8:c.403C>A	ENSMUSP00000027682.8:p.Leu135Ile	H-2-Kb	8	5	7	SAYAIMIL	SAYAIMLL	NetMHCpan	61.6	25.4	0.412	159	0.038	185.274	81.361	0.439	19.04	73.56	25.4	61.6	137.3219621	296.9887511	153.0171117	379.9618556	PW3330T2	2.428571429	2.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.042	159	0	0	NA	1qE4	chr1-4867294-194959842	2	2	0	0.58	2	NON-ABERRANT	1	0.144827586	sgMlh1	colon
chr12	24878320	24878320	AT	A	ENSMUST00000110942.10	1	ENSMUSG00000020646	FS	F/X	69	Mboat2	ENSMUST00000110942.10:c.211del	ENSMUSP00000106567.3:p.Cys71AlafsTer20	H-2-Kb	8	7	7	LYLAFFAL	LYLAFFCF	NetMHC	87.38	3402.72	38.942	170	0.071	118.506	4292.893	36.225	3402.72	87.38	4838.3	185.7	5737.728575	118.7790917	3747.485835	118.2333514	PW3330T2	2.214285714	2.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.063	170	0	0	NA	12qA1.3	chr12-3236683-119202587	2	1	1	0.58	2	NON-ABERRANT	1	0.217241379	sgMlh1	colon
chr10	23816368	23816369	ATC	A	ENSMUST00000119597.7	5	ENSMUSG00000037455	FS	I/X	245	Slc18b1	ENSMUST00000119597.7:c.740_741del	ENSMUSP00000112634.1:p.Leu247GlnfsTer50	H-2-Kb	8	11	3	ISQLLLRL	NA	SMM	81.234	NA	NA	140	0.086	91.24	NA	NA	NA	91.96	NA	117.5	NA	81.23440428	NA	90.51905263	PW3330T2	0.914285714	1.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0857	140	0	0	NA	10qA4	chr10-5218416-128943022	2	1	1	0.58	2	NON-ABERRANT	1	0.295517241	sgMlh1	colon
chr5	31072682	31072682	AC	A	ENSMUST00000013773.11	1	ENSMUSG00000013629	FS	P/X	1508	Cad	ENSMUST00000013773.11:c.4527del	ENSMUSP00000013773.5:p.Ile1510SerfsTer46	H-2-Kb	8	14	0	LMLLLSPL	NA	NetMHC	98.08	NA	NA	97	0.062	165.449	NA	NA	NA	98.08	NA	108.7	NA	252.1970487	NA	222.1979255	PW3330T2	2.1	2.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.065	97	0	0	NA	5qB1	chr5-3582305-151648188	2	2	0	0.58	2	NON-ABERRANT	1	0.224137931	sgMlh1	colon
chr2	85399675	85399675	T	G	ENSMUST00000214895.2	3	ENSMUSG00000075221	missense	N/T	286	Olfr992	ENSMUST00000214895.2:c.857A>C	ENSMUSP00000149333.1:p.Asn286Thr	H-2-Kb	8	6	6	MIPMLTPL	MIPMLNPL	NetMHC	98.44	183.91	1.868	143	0.063	191.425	307.785	1.608	183.91	98.44	324.1	153.9	292.9139126	228.9496585	322.6561891	229.4774419	PW3330T2	1.442857143	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.062	143	0	0	NA	2qD	chr2-4992194-180717794	2	1	1	0.58	2	NON-ABERRANT	1	0.213793103	sgMlh1	colon
chr11	49327551	49327551	G	A	ENSMUST00000215671.1	5	ENSMUSG00000101874	missense	A/T	47	Olfr1391	ENSMUST00000215671.1:c.139G>A	ENSMUSP00000150635.1:p.Ala47Thr	H-2-Kb	8	8	4	TIITLSQL	TIIALSQL	NetMHC	166.7	202	1.212	331	0.036	185.135	213.723	1.154	202	166.7	211.8	173.6	225.8083514	221.1770188	215.6453014	196.6708524	PW3330T2	1.657142857	1.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.035	331	0	0	NA	11qB1.2	chr11-3135564-121426601	2	1	1	0.58	2	NON-ABERRANT	1	0.120689655	sgMlh1	colon
chr19	16641572	16641572	TA	T	ENSMUST00000068156.7	2	ENSMUSG00000046230	FS	Y/X	2877	Vps13a	ENSMUST00000068156.7:c.8629del	ENSMUSP00000068716.6:p.Tyr2877MetfsTer20	H-2-Kb	8	6	6	VEAFFMNL	VEAFFYEP	SMM	63.495	8067.519	127.057	96	0.052	112.485	14589.95	129.706	20067.12	201.53	16997.3	128.2	8067.519058	63.49506908	12182.60042	96.76983488	PW3330T2	0.871428571	0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0521	96	0	0	NA	19qA	chr19-3378213-59322783	2	1	1	0.58	2	NON-ABERRANT	1	0.179655172	sgMlh1	colon
chr4	116530506	116530506	G	A	ENSMUST00000106479.7	1	ENSMUSG00000028696	missense	R/H	427	Ipp	ENSMUST00000106479.7:c.1280G>A	ENSMUSP00000102088.1:p.Arg427His	H-2-Kb	8	9	3	VSHYYFGC	VSRYYFGC	NetMHCpan	166.5	267.5	1.607	213	0.061	205.028	242.821	1.184	300.85	230.69	267.5	166.5	170.8991883	201.251905	218.1423563	208.8045702	PW3330T2	-0.242857143	-1.59E-17	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.068	213	0	0	NA	4qD1	chr4-5799947-156200568	2	1	1	0.58	2	NON-ABERRANT	1	0.234482759	sgMlh1	colon
chr19	26886471	26886471	CT	C	ENSMUST00000099536.3	1	ENSMUSG00000074913	FS	T/X	37	Gm815	ENSMUST00000099536.3:c.116del	ENSMUSP00000097134.2:p.Phe39SerfsTer53	H-2-Kb	8	8	6	ASHTFSPT	ASHTFFPH	SMMPMBEC	226.329	511.376	2.259	182	0.099	316.678	1494.883	4.721	2780.57	234.57	1308.1	609.1	1681.666993	398.7860888	511.3755976	226.3288934	PW3330T2	-0.714285714	-0.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.094	182	0	0	NA	19qC1	chr19-3378213-59322783	2	1	1	0.58	2	NON-ABERRANT	1	0.324137931	sgMlh1	colon
chr10	23816368	23816369	ATC	A	ENSMUST00000119597.7	5	ENSMUSG00000037455	FS	I/X	245	Slc18b1	ENSMUST00000119597.7:c.740_741del	ENSMUSP00000112634.1:p.Leu247GlnfsTer50	H-2-Kb	8	24	0	VSLCHGEV	NA	NetMHC	249.06	NA	NA	140	0.086	286.559	NA	NA	NA	249.06	NA	413.1	NA	250.4609364	NA	322.6561891	PW3330T2	0.371428571	0.371428571	FALSE	FALSE	FALSE	1	FALSE	0	Strelka2;Vardict	2	0.0857	140	0	0	NA	10qA4	chr10-5218416-128943022	2	1	1	0.58	2	NON-ABERRANT	1	0.295517241	sgMlh1	colon
chr2	153399446	153399446	AG	A	ENSMUST00000109790.1	5	ENSMUSG00000042548	FS	G/X	640	Asxl1	ENSMUST00000109790.1:c.1925del	ENSMUSP00000105413.1:p.Gly642ValfsTer58	H-2-Kb	8	33	0	VVMVVRPV	NA	NetMHC	253.25	NA	NA	68	0.147	329.794	NA	NA	NA	253.25	NA	280.5	NA	467.4552051	NA	379.0879676	PW3330T2	1.8	1.8	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1471	68	0	0	NA	2qH1	chr2-4992194-180717794	2	1	1	0.58	2	NON-ABERRANT	1	0.507241379	sgMlh1	colon
chr10	20979552	20979552	G	A	ENSMUST00000105525.11	1	ENSMUSG00000019986	missense	V/M	587	Ahi1	ENSMUST00000105525.11:c.1759G>A	ENSMUSP00000101164.4:p.Val587Met	H-2-Kb	8	7	5	AAILMRQL	AAILVRQL	NetMHC	293.21	604.3	2.061	276	0.047	375.039	603.944	1.61	604.3	293.21	811.6	366.6	603.5871704	446.4162552	573.7728575	383.4775994	PW3330T2	1.114285714	1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.056	276	0	0	NA	10qA3	chr10-5218416-128943022	2	1	1	0.58	2	NON-ABERRANT	1	0.193103448	sgMlh1	colon
chr2	153399446	153399446	AG	A	ENSMUST00000109790.1	5	ENSMUSG00000042548	FS	G/X	640	Asxl1	ENSMUST00000109790.1:c.1925del	ENSMUSP00000105413.1:p.Gly642ValfsTer58	H-2-Kb	8	36	0	VVRPVATL	NA	SMM	210.737	NA	NA	68	0.147	296.367	NA	NA	NA	295.06	NA	306	NA	210.7366151	NA	297.6733808	PW3330T2	1.028571429	1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1471	68	0	0	NA	2qH1	chr2-4992194-180717794	2	1	1	0.58	2	NON-ABERRANT	1	0.507241379	sgMlh1	colon
chr16	91861229	91861229	GA	G	ENSMUST00000114002.8	5	ENSMUSG00000022957	FS	G/X	1066	Itsn1	ENSMUST00000114002.8:c.3204del	ENSMUSP00000109635.2:p.Lys1068AsnfsTer26	H-2-Kb	8	12	2	KNLKLPRL	NA	NetMHCpan	312.4	NA	NA	140	0.043	357.774	NA	NA	NA	414.67	NA	312.4	NA	329.4124431	NA	386.1357391	PW3330T2	-0.3	-0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.047	140	0	0	NA	16qC4	chr16-4677106-96819699	2	2	0	0.58	2	NON-ABERRANT	1	0.162068966	sgMlh1	colon
chr10	23816368	23816369	ATC	A	ENSMUST00000119597.7	5	ENSMUSG00000037455	FS	I/X	245	Slc18b1	ENSMUST00000119597.7:c.740_741del	ENSMUSP00000112634.1:p.Leu247GlnfsTer50	H-2-Kb	8	9	5	VIISQLLL	VIISLSSC	SMM	264.083	1311.415	4.966	140	0.086	397.918	2739.6	6.885	4676.73	431.13	3880.6	388.7	1311.414557	264.0827294	1598.600704	407.1364636	PW3330T2	2.3	2.357142857	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0857	140	0	0	NA	10qA4	chr10-5218416-128943022	2	1	1	0.58	2	NON-ABERRANT	1	0.295517241	sgMlh1	colon
chr18	37302297	37302297	G	A	ENSMUST00000051754.1	NA	ENSMUSG00000045498	missense	V/M	439	Pcdhb3	ENSMUST00000051754.1:c.1315G>A	ENSMUSP00000059180.1:p.Val439Met	H-2-Kb	8	9	3	ITMQVSDL	ITVQVSDL	SMMPMBEC	293.589	449.511	1.531	464	0.015	379.816	823.07	2.167	1196.63	497.72	1393	413.9	446.4162552	345.7323355	449.5106648	293.5891489	PW3330T2	0.2	0.3	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.017	464	0	0	NA	18qB3	chr18-3281580-80194980	2	1	1	0.58	2	NON-ABERRANT	1	0.05862069	sgMlh1	colon
chr19	26886471	26886471	CT	C	ENSMUST00000099536.3	1	ENSMUSG00000074913	FS	T/X	37	Gm815	ENSMUST00000099536.3:c.116del	ENSMUSP00000097134.2:p.Phe39SerfsTer53	H-2-Kb	8	48	0	AVLAASRL	NA	SMM	371.313	NA	NA	182	0.099	461.054	NA	NA	NA	542.59	NA	532.4	NA	371.3128679	NA	389.7086091	PW3330T2	1.442857143	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.094	182	0	0	NA	19qC1	chr19-3378213-59322783	2	1	1	0.58	2	NON-ABERRANT	1	0.324137931	sgMlh1	colon
chr2	85399675	85399675	T	G	ENSMUST00000214895.2	3	ENSMUSG00000075221	missense	N/T	286	Olfr992	ENSMUST00000214895.2:c.857A>C	ENSMUSP00000149333.1:p.Asn286Thr	H-2-Kb	9	5	7	IMIPMLTPL	IMIPMLNPL	NetMHCpan	35.6	59	1.657	143	0.063	56.245	60.48	1.075	52.43	45.02	59	35.6	61.95979897	67.46988967	82.84189027	79.11339102	PW3330T2	1.442857143	2.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.062	143	0	0	NA	2qD	chr2-4992194-180717794	2	1	1	0.58	2	NON-ABERRANT	1	0.213793103	sgMlh1	colon
chr10	23816368	23816369	ATC	A	ENSMUST00000119597.7	5	ENSMUSG00000037455	FS	I/X	245	Slc18b1	ENSMUST00000119597.7:c.740_741del	ENSMUSP00000112634.1:p.Leu247GlnfsTer50	H-2-Kb	9	48	0	ILRHFFAAV	NA	NetMHC	48.15	NA	NA	140	0.086	164.936	NA	NA	NA	48.15	NA	67.3	NA	294.5167504	NA	262.57296	PW3330T2	0.814285714	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0857	140	0	0	NA	10qA4	chr10-5218416-128943022	2	1	1	0.58	2	NON-ABERRANT	1	0.295517241	sgMlh1	colon
chr4	136675438	136675438	C	A	ENSMUST00000059287.13	2	ENSMUSG00000028664	missense	Q/H	508	Ephb2	ENSMUST00000059287.13:c.1524G>T	ENSMUSP00000058135.7:p.Gln508His	H-2-Kb	9	6	6	AIYVFHVRA	AIYVFQVRA	NetMHC	54.77	139.16	2.541	91	0.066	205.585	368.33	1.792	139.16	54.77	392.5	199.7	362.3347605	235.0228021	374.3260056	211.4706012	PW3330T2	0.571428571	1.857142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.071	91	0	0	NA	4qD3	chr4-5799947-156200568	2	1	1	0.58	2	NON-ABERRANT	1	0.244827586	sgMlh1	colon
chr2	112849606	112849606	TA	T	ENSMUST00000208290.1	5	ENSMUSG00000057378	FS	Y/X	1213	Ryr3	ENSMUST00000208290.1:c.3637del	ENSMUSP00000147250.1:p.Tyr1213IlefsTer15	H-2-Kb	9	6	6	STFKFIPCV	STFKFYTMC	NetMHCpan	56.8	30.1	0.53	133	0.053	149.494	69.653	0.466	25.27	66.58	30.1	56.8	145.2479461	238.292295	109.2068801	232.4074256	PW3330T2	1.614285714	1.614285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.065	133	0	0	NA	2qE3	chr2-4992194-180717794	2	1	1	0.58	2	NON-ABERRANT	1	0.224137931	sgMlh1	colon
chr1	58904023	58904023	T	G	ENSMUST00000027186.11	1	ENSMUSG00000026028	missense	K/N	741	Trak2	ENSMUST00000027186.11:c.2223A>C	ENSMUSP00000027186.5:p.Lys741Asn	H-2-Kb	9	4	8	SSTRSLANL	SSTRSLAKL	NetMHC	76.7	469.67	6.123	114	0.114	499.951	946.746	1.894	469.67	76.7	959.7	306.3	1049.808295	693.6014622	933.7916798	787.4989801	PW3330T2	-0.014285714	-0.014285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.102	114	0	0	NA	1qC1.3	chr1-4867294-194959842	2	2	0	0.58	2	NON-ABERRANT	1	0.351724138	sgMlh1	colon
chr13	22852324	22852324	GA	G	ENSMUST00000228645.1	NA	ENSMUSG00000063998	FS	S/X	58	Vmn1r211	ENSMUST00000228645.1:c.172del	ENSMUSP00000154146.1:p.Ser58GlnfsTer8	H-2-Kb	9	6	6	IIMLFQKGF	IIMLFSKGI	NetMHC	111.84	80.57	0.72	252	0.032	211.654	184.856	0.873	80.57	111.84	70.1	159	289.1412139	264.3078123	415.1929781	350.1466697	PW3330T2	0.5	1.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.037	252	0	0	NA	13qA3.1	chr13-3556909-119495179	2	1	1	0.58	2	NON-ABERRANT	1	0.127586207	sgMlh1	colon
chr10	23816368	23816369	ATC	A	ENSMUST00000119597.7	5	ENSMUSG00000037455	FS	I/X	245	Slc18b1	ENSMUST00000119597.7:c.740_741del	ENSMUSP00000112634.1:p.Leu247GlnfsTer50	H-2-Kb	9	34	0	VNWIRGPGL	NA	NetMHCpan	48.8	NA	NA	140	0.086	107.375	NA	NA	NA	114.23	NA	48.8	NA	119.9803156	NA	100.519426	PW3330T2	0.071428571	0.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0857	140	0	0	NA	10qA4	chr10-5218416-128943022	2	1	1	0.58	2	NON-ABERRANT	1	0.295517241	sgMlh1	colon
chr3	63985633	63985633	TA	T	ENSMUST00000029405.7	1	ENSMUSG00000027823	FS	K/X	120	Gmps	ENSMUST00000029405.7:c.364del	ENSMUSP00000029405.7:p.Ser122ValfsTer36	H-2-Kb	9	25	0	IIRVHYSGA	NA	NetMHC	130.79	NA	NA	216	0.083	308.92	NA	NA	NA	130.79	NA	1483.8	NA	291.8166046	NA	326.0243217	PW3330T2	-0.6	0.485714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.086	216	0	0	NA	3qE1	chr3-8666483-159911278	2	1	1	0.58	2	NON-ABERRANT	1	0.296551724	sgMlh1	colon
chr19	26886471	26886471	CT	C	ENSMUST00000099536.3	1	ENSMUSG00000074913	FS	T/X	37	Gm815	ENSMUST00000099536.3:c.116del	ENSMUSP00000097134.2:p.Phe39SerfsTer53	H-2-Kb	9	8	6	ASHTFSPTV	ASHTFFPHC	NetMHC	132.66	143.7	1.083	182	0.099	316.389	269.647	0.852	143.7	132.66	86.1	166	553.4902819	466.7775928	395.5942769	600.1364431	PW3330T2	-1.27E-16	-1.27E-16	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.094	182	0	0	NA	19qC1	chr19-3378213-59322783	2	1	1	0.58	2	NON-ABERRANT	1	0.324137931	sgMlh1	colon
chr12	24878320	24878320	AT	A	ENSMUST00000110942.10	1	ENSMUSG00000020646	FS	F/X	69	Mboat2	ENSMUST00000110942.10:c.211del	ENSMUSP00000106567.3:p.Cys71AlafsTer20	H-2-Kb	9	19	0	YTFLYKVGF	NA	NetMHCpan	116.5	NA	NA	170	0.071	197.215	NA	NA	NA	148.33	NA	116.5	NA	246.0990856	NA	257.7804634	PW3330T2	1.142857143	1.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.063	170	0	0	NA	12qA1.3	chr12-3236683-119202587	2	1	1	0.58	2	NON-ABERRANT	1	0.217241379	sgMlh1	colon
chr1	9747397	9747397	C	T	ENSMUST00000057438.6	1	ENSMUSG00000045210	missense	A/T	254	Vcpip1	ENSMUST00000057438.6:c.760G>A	ENSMUSP00000051248.6:p.Ala254Thr	H-2-Kb	9	4	8	QHLARYQTL	QHLARYQAL	NetMHC	153.06	109.43	0.715	183	0.049	222.636	208.144	0.935	109.43	153.06	723	617.7	192.8013187	204.6963035	223.4858341	240.5747261	PW3330T2	-0.085714286	-0.085714286	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.053	183	0	0	NA	1qA2	chr1-4867294-194959842	2	2	0	0.58	2	NON-ABERRANT	1	0.182758621	sgMlh1	colon
chr10	23816368	23816369	ATC	A	ENSMUST00000119597.7	5	ENSMUSG00000037455	FS	I/X	245	Slc18b1	ENSMUST00000119597.7:c.740_741del	ENSMUSP00000112634.1:p.Leu247GlnfsTer50	H-2-Kb	9	6	8	LAFVIISQL	LAFVIISLS	NetMHCpan	182.8	6829.2	37.359	140	0.086	227.882	4166.604	18.284	7664.66	208.45	6829.2	182.8	889.4263671	299.9922256	1504.007493	247.3147393	PW3330T2	2.214285714	2.971428571	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0857	140	0	0	NA	10qA4	chr10-5218416-128943022	2	1	1	0.58	2	NON-ABERRANT	1	0.295517241	sgMlh1	colon
chr19	26886471	26886471	CT	C	ENSMUST00000099536.3	1	ENSMUSG00000074913	FS	T/X	37	Gm815	ENSMUST00000099536.3:c.116del	ENSMUSP00000097134.2:p.Phe39SerfsTer53	H-2-Kb	9	47	0	IAVLAASRL	NA	NetMHCpan	204.2	NA	NA	182	0.099	389.876	NA	NA	NA	238.86	NA	204.2	NA	540.8913049	NA	703.4771574	PW3330T2	1.442857143	2.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.094	182	0	0	NA	19qC1	chr19-3378213-59322783	2	1	1	0.58	2	NON-ABERRANT	1	0.324137931	sgMlh1	colon
chr5	31072682	31072682	AC	A	ENSMUST00000013773.11	1	ENSMUSG00000013629	FS	P/X	1508	Cad	ENSMUST00000013773.11:c.4527del	ENSMUSP00000013773.5:p.Ile1510SerfsTer46	H-2-Kb	9	13	1	SLMLLLSPL	NA	NetMHCpan	166.4	NA	NA	97	0.062	361.067	NA	NA	NA	262.82	NA	166.4	NA	459.3143352	NA	515.5253194	PW3330T2	2.1	2.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.065	97	0	0	NA	5qB1	chr5-3582305-151648188	2	2	0	0.58	2	NON-ABERRANT	1	0.224137931	sgMlh1	colon
chr3	63985633	63985633	TA	T	ENSMUST00000029405.7	1	ENSMUSG00000027823	FS	K/X	120	Gmps	ENSMUST00000029405.7:c.364del	ENSMUSP00000029405.7:p.Ser122ValfsTer36	H-2-Kb	9	39	0	LFYLHMETV	NA	NetMHC	275.84	NA	NA	216	0.083	292.993	NA	NA	NA	275.84	NA	498.1	NA	301.3769268	NA	284.6098982	PW3330T2	0.171428571	0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.086	216	0	0	NA	3qE1	chr3-8666483-159911278	2	1	1	0.58	2	NON-ABERRANT	1	0.296551724	sgMlh1	colon
chr19	16641572	16641572	TA	T	ENSMUST00000068156.7	2	ENSMUSG00000046230	FS	Y/X	2877	Vps13a	ENSMUST00000068156.7:c.8629del	ENSMUSP00000068716.6:p.Tyr2877MetfsTer20	H-2-Kb	9	5	7	GVEAFFMNL	GVEAFFYEP	NetMHCpan	209.8	25558.5	121.823	96	0.052	428.684	14626.295	34.119	23829.46	327.4	25558.5	209.8	3598.404656	632.5720517	5423.12981	529.9684305	PW3330T2	0.871428571	1.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0521	96	0	0	NA	19qA	chr19-3378213-59322783	2	1	1	0.58	2	NON-ABERRANT	1	0.179655172	sgMlh1	colon
chr4	116530506	116530506	G	A	ENSMUST00000106479.7	1	ENSMUSG00000028696	missense	R/H	427	Ipp	ENSMUST00000106479.7:c.1280G>A	ENSMUSP00000102088.1:p.Arg427His	H-2-Kb	9	9	3	VSHYYFGCC	VSRYYFGCC	SMMPMBEC	220.928	253.659	1.148	213	0.061	288.495	399.452	1.385	432	341.79	384.8	235.2	414.1045477	382.9217191	253.6588388	220.9276129	PW3330T2	0.228571429	0.228571429	FALSE	TRUE	FALSE	2	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.068	213	0	0	NA	4qD1	chr4-5799947-156200568	2	1	1	0.58	2	NON-ABERRANT	1	0.234482759	sgMlh1	colon
chr10	129842936	129842936	C	CA	ENSMUST00000205013.2	5	ENSMUSG00000049052	FS	L/FX	35	Olfr812	ENSMUST00000205013.2:c.104dup	ENSMUSP00000145482.2:p.Leu35PhefsTer54	H-2-Kb	9	9	3	YIFEHDGEL	NA	SMMPMBEC	268.071	NA	NA	189	0.037	420.164	NA	NA	NA	572.33	NA	564.2	NA	276.1277156	NA	268.0711022	PW3330T2	-1.071428571	-0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.045	189	0	0	NA	10qD3	NA	NA	NA	NA	0.58	2	NON-ABERRANT	NA	NA	sgMlh1	colon
chr9	80136750	80136750	GA	G	ENSMUST00000165607.8	1	ENSMUSG00000034252	FS	K/X	888	Senp6	ENSMUST00000165607.8:c.2672del	ENSMUSP00000126777.2:p.Asn891IlefsTer44	H-2-Db	9	42	0	ASGMNASVL	NA	NetMHC	36.8	NA	NA	116	0.086	141.593	NA	NA	NA	36.8	NA	75.9	NA	216.0827011	NA	207.2860138	PW3330T2	1	1	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0862	116	0	0	NA	9qE1	chr9-3342997-124108155	2	1	1	0.58	2	NON-ABERRANT	1	0.297241379	sgMlh1	colon
chr7	87037297	87037297	T	C	ENSMUST00000164462.2	5	ENSMUSG00000090362	missense	C/R	629	Vmn2r79	ENSMUST00000164462.2:c.1885T>C	ENSMUSP00000132478.1:p.Cys629Arg	H-2-Kb	8	6	6	ISLIFRFI	ISLIFCFI	NetMHC	11.95	25.07	2.098	375	0.088	22.29	29.286	1.314	25.07	11.95	27.9	16.8	30.671852	28.03754606	30.671852	27.78049629	PW3330T2	1.871428571	1.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.095	375	0	0	NA	7qD3	chr7-4830708-142893198	2	1	1	0.58	2	NON-ABERRANT	1	0.327586207	sgMlh1	colon
chrX	46329506	46329506	G	A	ENSMUST00000059466.2	NA	ENSMUSG00000046615	missense	V/M	133	Actrt1	ENSMUST00000059466.2:c.397G>A	ENSMUSP00000062570.2:p.Val133Met	H-2-Kb	8	4	8	IMFEKFNM	IMFEKFNV	NetMHCpan	20.1	49	2.438	180	0.044	152.252	146.598	0.963	36.12	30.51	49	20.1	244.1968177	273.9933359	253.3611374	273.9933359	PW3330T2	-0.214285714	0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.053	180	0	0	NA	XqA4	chrX-7577595-169987429	2	2	0	0.58	2	NON-ABERRANT	1	0.182758621	sgMlh1	colon
chr9	38516818	38516818	C	A	ENSMUST00000215139.1	NA	ENSMUSG00000110991	missense	P/H	262	Olfr908	ENSMUST00000215139.1:c.785C>A	ENSMUSP00000151016.1:p.Pro262His	H-2-Kb	8	7	5	CIFNHLHL	CIFNPLHL	NetMHCpan	30.6	228	7.451	125	0.112	51.114	374.21	7.321	447.3	48.31	228	30.6	301.1202761	53.91877292	466.380088	81.60936526	PW3330T2	0.714285714	0.714285714	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.107	125	0	0	NA	9qA5.1	chr9-3342997-124108155	2	1	1	0.58	2	NON-ABERRANT	1	0.368965517	sgMlh1	colon
chr9	38516818	38516818	C	A	ENSMUST00000215139.1	NA	ENSMUSG00000110991	missense	P/H	262	Olfr908	ENSMUST00000215139.1:c.785C>A	ENSMUSP00000151016.1:p.Pro262His	H-2-Kb	8	5	7	HSCIFNHL	HSCIFNPL	SMMPMBEC	83.703	56.851	0.679	125	0.112	131.031	84.666	0.646	97.43	151.72	246.4	293.2	71.90183929	110.3417837	56.85124764	83.70280268	PW3330T2	0.871428571	0.871428571	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.107	125	0	0	NA	9qA5.1	chr9-3342997-124108155	2	1	1	0.58	2	NON-ABERRANT	1	0.368965517	sgMlh1	colon
chr5	112363174	112363174	A	AT	ENSMUST00000112359.8	5	ENSMUSG00000042328	FS	-/X	114-115	Hps4	ENSMUST00000112359.8:c.348dup	ENSMUSP00000107978.2:p.His117SerfsTer81	H-2-Kb	8	9	6	LIGFFSFL	LIGFFHFY	SMMPMBEC	121.546	5391.877	44.361	93	0.054	139.337	11411.731	81.9	16417.96	286.24	13079.4	140.4	9744.061133	138.2738324	5391.877292	121.5458122	PW3330T2	2.214285714	2.214285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.07	93	0	0	NA	5qF	chr5-3582305-151648188	2	2	0	0.58	2	NON-ABERRANT	1	0.24137931	sgMlh1	colon
chr9	38516818	38516818	C	A	ENSMUST00000215139.1	NA	ENSMUSG00000110991	missense	P/H	262	Olfr908	ENSMUST00000215139.1:c.785C>A	ENSMUSP00000151016.1:p.Pro262His	H-2-Kb	8	9	3	FNHLHLSL	FNPLHLSL	NetMHCpan	190	487.3	2.565	125	0.112	384.946	507.28	1.318	527.26	426.99	487.3	190	394.2212222	351.3500341	581.7548331	418.5429201	PW3330T2	0.1	0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.107	125	0	0	NA	9qA5.1	chr9-3342997-124108155	2	1	1	0.58	2	NON-ABERRANT	1	0.368965517	sgMlh1	colon
chr5	112363174	112363174	A	AT	ENSMUST00000112359.8	5	ENSMUSG00000042328	FS	-/X	114-115	Hps4	ENSMUST00000112359.8:c.348dup	ENSMUSP00000107978.2:p.His117SerfsTer81	H-2-Kb	8	13	2	FSFLHGPC	FHFYMGPV	SMM	137.956	534.244	3.873	93	0.054	240.129	533.63	2.222	572.13	548.65	456.8	317.8	534.2444264	137.9558114	533.0156983	162.4575876	PW3330T2	0.442857143	0.485714286	FALSE	TRUE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.07	93	0	0	NA	5qF	chr5-3582305-151648188	2	2	0	0.58	2	NON-ABERRANT	1	0.24137931	sgMlh1	colon
chr5	112363174	112363174	A	AT	ENSMUST00000112359.8	5	ENSMUSG00000042328	FS	-/X	114-115	Hps4	ENSMUST00000112359.8:c.348dup	ENSMUSP00000107978.2:p.His117SerfsTer81	H-2-Kb	8	36	0	VGYLHHTS	NA	SMM	176.092	NA	NA	93	0.054	357.104	NA	NA	NA	2128.32	NA	409.6	NA	176.0921516	NA	304.6070846	PW3330T2	-0.828571429	-0.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.07	93	0	0	NA	5qF	chr5-3582305-151648188	2	2	0	0.58	2	NON-ABERRANT	1	0.24137931	sgMlh1	colon
chr8	93534589	93534589	AG	A	ENSMUST00000212009.1	1	ENSMUSG00000058019	FS	P/X	66	Ces5a	ENSMUST00000212009.1:c.197del	ENSMUSP00000148481.1:p.Pro66LeufsTer33	H-2-Kb	9	3	9	LGIPFAAPL	LGIPFAAPP	NetMHC	16.2	10318.59	636.95	50	0.08	209.213	3708.839	17.728	10318.59	16.2	4444.3	19.3	1841.238299	399.1259819	2973.377153	403.8778168	PW3330T2	1.642857143	1.814285714	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.08	50	0	0	NA	8qC5	chr8-3624720-125736263	2	1	1	0.58	2	NON-ABERRANT	1	0.275862069	sgMlh1	colon
chr7	87037297	87037297	T	C	ENSMUST00000164462.2	5	ENSMUSG00000090362	missense	C/R	629	Vmn2r79	ENSMUST00000164462.2:c.1885T>C	ENSMUSP00000132478.1:p.Cys629Arg	H-2-Kb	9	8	4	LIFRFICSL	LIFCFICSL	NetMHCpan	22.1	100.9	4.566	375	0.088	80.435	110.302	1.371	92.76	31.12	100.9	22.1	119.7043685	129.7507868	123.381487	137.1671136	PW3330T2	1.585714286	2.342857143	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.095	375	0	0	NA	7qD3	chr7-4830708-142893198	2	1	1	0.58	2	NON-ABERRANT	1	0.327586207	sgMlh1	colon
chr5	112363174	112363174	A	AT	ENSMUST00000112359.8	5	ENSMUSG00000042328	FS	-/X	114-115	Hps4	ENSMUST00000112359.8:c.348dup	ENSMUSP00000107978.2:p.His117SerfsTer81	H-2-Kb	9	8	7	QLIGFFSFL	QLIGFFHFY	NetMHCpan	88.2	6460.7	73.251	93	0.054	222.012	4312.332	19.424	11451.12	160.16	6460.7	88.2	1469.298381	283.863792	2163.963843	365.8053055	PW3330T2	2.214285714	2.214285714	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.07	93	0	0	NA	5qF	chr5-3582305-151648188	2	2	0	0.58	2	NON-ABERRANT	1	0.24137931	sgMlh1	colon
chr9	80136750	80136750	GA	G	ENSMUST00000165607.8	1	ENSMUSG00000034252	FS	K/X	888	Senp6	ENSMUST00000165607.8:c.2672del	ENSMUSP00000126777.2:p.Asn891IlefsTer44	H-2-Kb	9	47	0	ASVLYIIQM	NA	NetMHC	227.71	NA	NA	116	0.086	259.534	NA	NA	NA	227.71	NA	259.5	NA	350.0338139	NA	259.5673122	PW3330T2	2.014285714	2.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0862	116	0	0	NA	9qE1	chr9-3342997-124108155	2	1	1	0.58	2	NON-ABERRANT	1	0.297241379	sgMlh1	colon
chr5	112363174	112363174	A	AT	ENSMUST00000112359.8	5	ENSMUSG00000042328	FS	-/X	114-115	Hps4	ENSMUST00000112359.8:c.348dup	ENSMUSP00000107978.2:p.His117SerfsTer81	H-2-Kb	9	13	2	FSFLHGPCL	NA	NetMHCpan	129.5	NA	NA	93	0.054	194.6	NA	NA	NA	286.33	NA	129.5	NA	207.5439127	NA	181.6561058	PW3330T2	1.1	1.1	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.07	93	0	0	NA	5qF	chr5-3582305-151648188	2	2	0	0.58	2	NON-ABERRANT	1	0.24137931	sgMlh1	colon
chr9	21399217	21399217	CG	C	ENSMUST00000067646.11	1	ENSMUSG00000032178	FS	T/X	547	Ilf3	ENSMUST00000067646.11:c.1646del	ENSMUSP00000065770.4:p.Gly549AlafsTer37	H-2-Kb	9	34	0	VQTKRWQRL	NA	SMMPMBEC	246.746	NA	NA	102	0.049	301.256	NA	NA	NA	313.37	NA	550.3	NA	289.1412139	NA	246.7459312	PW3330T2	-2.028571429	-1.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.062	102	0	0	NA	9qA3	chr9-3342997-124108155	2	1	1	0.58	2	NON-ABERRANT	1	0.213793103	sgMlh1	colon
chr9	80136550	80136550	CA	C	ENSMUST00000165607.8	1	ENSMUSG00000034252	FS	Q/X	821	Senp6	ENSMUST00000165607.8:c.2467del	ENSMUSP00000126777.2:p.Thr823LeufsTer27	H-2-Kb	9	17	0	RTVVFLLPV	NA	NetMHCpan	325.1	NA	NA	163	0.031	465.718	NA	NA	NA	383.02	NA	325.1	NA	548.4158525	NA	681.1613539	PW3330T2	3.057142857	3.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.039	163	0	0	NA	9qE1	chr9-3342997-124108155	2	1	1	0.58	2	NON-ABERRANT	1	0.134482759	sgMlh1	colon
chr9	80136550	80136550	CA	C	ENSMUST00000165607.8	1	ENSMUSG00000034252	FS	Q/X	821	Senp6	ENSMUST00000165607.8:c.2467del	ENSMUSP00000126777.2:p.Thr823LeufsTer27	H-2-Kb	9	27	0	WVLVHRTLL	NA	SMM	358.187	NA	NA	163	0.031	388.605	NA	NA	NA	389.73	NA	874.4	NA	358.1871488	NA	387.4806325	PW3330T2	1.028571429	1.085714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.039	163	0	0	NA	9qE1	chr9-3342997-124108155	2	1	1	0.58	2	NON-ABERRANT	1	0.134482759	sgMlh1	colon
chrX	46329506	46329506	G	A	ENSMUST00000059466.2	NA	ENSMUSG00000046615	missense	V/M	133	Actrt1	ENSMUST00000059466.2:c.397G>A	ENSMUSP00000062570.2:p.Val133Met	H-2-Kb	9	4	8	IMFEKFNMP	IMFEKFNVP	SMM	52.253	80.004	1.531	180	0.044	380.687	994.396	2.612	1950.78	667.78	1858.7	1301.6	80.00368662	52.25285205	130.0918231	93.5944292	PW3330T2	-0.714285714	0.157142857	FALSE	FALSE	TRUE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.053	180	0	0	NA	XqA4	chrX-7577595-169987429	2	2	0	0.58	2	NON-ABERRANT	1	0.182758621	sgMlh1	colon
chr5	112363174	112363174	A	AT	ENSMUST00000112359.8	5	ENSMUSG00000042328	FS	-/X	114-115	Hps4	ENSMUST00000112359.8:c.348dup	ENSMUSP00000107978.2:p.His117SerfsTer81	H-2-Kb	9	36	0	VGYLHHTSP	NA	SMM	161.477	NA	NA	93	0.054	483.39	NA	NA	NA	1726.86	NA	733.3	NA	161.47675	NA	233.4801695	PW3330T2	-1	-0.114285714	FALSE	FALSE	TRUE	0	FALSE	0	Mutect2;Vardict	2	0.07	93	0	0	NA	5qF	chr5-3582305-151648188	2	2	0	0.58	2	NON-ABERRANT	1	0.24137931	sgMlh1	colon
chrX	69544670	69544670	C	A	ENSMUST00000033532.6	1	ENSMUSG00000031189	missense	L/I	148	Aff2	ENSMUST00000033532.6:c.442C>A	ENSMUSP00000033532.6:p.Leu148Ile	H-2-Db	9	4	8	VVILNSTII	VVILNSTLI	NetMHC	64.01	47.56	0.743	74	0.189	99.937	71.563	0.716	47.56	64.01	69.4	77.8	73.72588593	122.0731075	80.08847055	129.2915077	PW3352T1	1.757142857	1.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.179	74	0	0	NA	XqA7.2	NA	NA	NA	NA	0.65	2	NON-ABERRANT	NA	NA	sgMsh6	colon
chr11	23417709	23417709	C	A	ENSMUST00000180046.7	5	ENSMUSG00000056342	missense	S/Y	1682	Usp34	ENSMUST00000180046.7:c.5045C>A	ENSMUSP00000137430.1:p.Ser1682Tyr	H-2-Db	9	11	1	YSLADSDHL	SSLADSDHL	NetMHC	100.12	290.81	2.905	92	0.033	280.581	467.208	1.665	290.81	100.12	194.3	100.3	643.6058753	463.0415892	681.663437	460.8610447	PW3352T1	-0.228571429	-0.228571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.047	92	0	0	NA	11qA3.2	chr11-3132249-121238400	2	1	1	0.65	2	NON-ABERRANT	1	0.144615385	sgMsh6	colon
chr11	73965433	73965433	C	T	ENSMUST00000216291.1	5	ENSMUSG00000057050	missense	A/V	275	Olfr397	ENSMUST00000216291.1:c.824C>T	ENSMUSP00000150172.1:p.Ala275Val	H-2-Db	9	9	3	VMVVMYTVV	VMAVMYTVV	NetMHC	155.79	752.76	4.832	99	0.04	307.047	825.444	2.688	752.76	155.79	2158.4	1711.2	808.3882642	323.310642	842.5001755	290.783661	PW3352T1	2.385714286	2.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.051	99	0	0	NA	11qB4	chr11-3132249-121238400	2	1	1	0.65	2	NON-ABERRANT	1	0.156923077	sgMsh6	colon
chr4	123372442	123372442	C	A	ENSMUST00000097897.10	1	ENSMUSG00000028649	missense	A/S	6788	Macf1	ENSMUST00000097897.10:c.20362G>T	ENSMUSP00000095507.4:p.Ala6788Ser	H-2-Db	9	8	4	TAVSMGEAI	TAVAMGEAI	NetMHC	284.84	304.53	1.069	77	0.039	364.945	308.315	0.845	304.53	284.84	312.1	433.7	492.7424743	482.636319	269.5069691	296.1897328	PW3352T1	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.057	77	0	0	NA	4qD2.2	chr4-8828216-156200568	2	1	1	0.65	2	NON-ABERRANT	1	0.175384615	sgMsh6	colon
chr7	105337101	105337101	G	A	ENSMUST00000213290.1	5	ENSMUSG00000043948	missense	P/L	205	Olfr691	ENSMUST00000213290.1:c.614C>T	ENSMUSP00000150297.1:p.Pro205Leu	H-2-Kb	8	4	8	IWYGFSVL	IWYGFSVP	NetMHC	12.09	2689.03	222.418	155	0.026	18.804	1347.208	71.646	2689.03	12.09	2208.3	34.6	456.8146256	18.868614	486.1160944	18.73872337	PW3352T1	1.057142857	1.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.03	155	0	0	NA	7qE3	chr7-4554068-142893198	2	1	1	0.65	2	NON-ABERRANT	1	0.092307692	sgMsh6	colon
chr16	30309688	30309688	A	G	ENSMUST00000061190.7	1	ENSMUSG00000047953	missense	L/P	56	Gp5	ENSMUST00000061190.7:c.167T>C	ENSMUSP00000051895.6:p.Leu56Pro	H-2-Kb	8	5	7	TNLTHIPL	TNLTHILL	NetMHC	45.35	160.44	3.538	97	0.052	72.513	166.659	2.298	160.44	45.35	119.6	83.1	172.8781076	65.27396586	219.6544469	79.75170931	PW3352T1	0.442857143	0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.053	97	0	0	NA	16qB2	chr16-4677106-93596195	2	2	0	0.65	2	NON-ABERRANT	1	0.163076923	sgMsh6	colon
chr15	98543573	98543573	AG	A	ENSMUST00000169707.7	1	ENSMUSG00000011960	FS	L/X	605	Ccnt1	ENSMUST00000169707.7:c.1813del	ENSMUSP00000126874.1:p.Leu605PhefsTer4	H-2-Kb	8	4	8	LNFPFPPF	LNFPFPPL	NetMHCpan	33.2	5.1	0.154	106	0.104	98.642	7.355	0.075	4.66	52.16	5.1	33.2	9.610367602	156.221211	11.55420317	145.1242539	PW3352T1	0.014285714	0.157142857	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1038	106	0	0	NA	15qF1	chr15-6735277-101693188	2	1	1	0.65	2	NON-ABERRANT	1	0.319384615	sgMsh6	colon
chr12	3904191	3904191	C	T	ENSMUST00000020991.14	1	ENSMUSG00000020661	missense	R/C	788	Dnmt3a	ENSMUST00000020991.14:c.2362C>T	ENSMUSP00000020991.8:p.Arg788Cys	H-2-Kb	8	10	2	ACYFWGNL	ARYFWGNL	SMMPMBEC	59.668	98.796	1.656	187	0.064	82.107	144.133	1.755	177.67	115.29	253.6	71.8	110.5961477	92.41447486	98.79614526	59.66779652	PW3352T1	0.428571429	0.428571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.062	187	0	0	NA	12qA1.1	chr12-3252726-118041214	2	1	1	0.65	2	NON-ABERRANT	1	0.190769231	sgMsh6	colon
chr17	28576082	28576082	A	C	ENSMUST00000232862.1	NA	ENSMUSG00000062252	missense	M/L	28	Lhfpl5	ENSMUST00000232862.1:c.82A>C	ENSMUSP00000156959.1:p.Met28Leu	H-2-Kb	8	8	4	VGVLWGTL	VGVMWGTL	NetMHCpan	81.7	67.5	0.826	90	0.044	150.19	154.127	1.026	132.97	142.35	67.5	81.7	268.9923939	204.0515979	175.2830817	158.0301673	PW3352T1	1.342857143	1.4	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.059	90	0	0	NA	17qA3.3	chr17-5975805-89046578	2	1	1	0.65	2	NON-ABERRANT	1	0.181538462	sgMsh6	colon
chr7	10633683	10633683	G	A	ENSMUST00000226255.1	NA	ENSMUSG00000045340	missense	A/T	33	Vmn1r70	ENSMUST00000226255.1:c.97G>A	ENSMUSP00000154041.1:p.Ala33Thr	H-2-Kb	8	9	3	IITDFTGV	IIADFTGV	NetMHC	142.61	153.79	1.078	156	0.032	223.284	211.496	0.947	153.79	142.61	331.4	537.6	182.7006111	204.0515979	240.2923806	242.5157786	PW3352T1	0.885714286	0.928571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.034	156	0	0	NA	7qA1	chr7-4554068-142893198	2	1	1	0.65	2	NON-ABERRANT	1	0.104615385	sgMsh6	colon
chrX	41402829	41402829	AG	A	ENSMUST00000076349.11	1	ENSMUSG00000001986	FS	Q/X	40	Gria3	ENSMUST00000076349.11:c.121del	ENSMUSP00000075687.5:p.Glu41SerfsTer25	H-2-Kb	8	12	1	STVLSALL	NA	NetMHC	179.04	NA	NA	63	0.079	273.781	NA	NA	NA	179.04	NA	433.5	NA	258.6663888	NA	288.8949831	PW3352T1	2.271428571	2.271428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.086	63	0	0	NA	XqA4	NA	NA	NA	NA	0.65	2	NON-ABERRANT	NA	NA	sgMsh6	colon
chr17	37752711	37752711	G	A	ENSMUST00000174675.3	5	ENSMUSG00000060017	missense	A/T	286	Olfr121	ENSMUST00000174675.3:c.856G>A	ENSMUSP00000133865.3:p.Ala286Thr	H-2-Kb	8	5	7	LALFYTTV	LALFYTAV	NetMHCpan	55.3	59.8	1.081	404	0.025	283.073	167.666	0.592	144.9	251.56	59.8	55.3	190.4320313	316.7670499	199.8664966	314.5864409	PW3352T1	1.414285714	1.414285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.027	404	0	0	NA	17qB1	chr17-5975805-89046578	2	1	1	0.65	2	NON-ABERRANT	1	0.083076923	sgMsh6	colon
chr18	37686606	37686606	T	G	ENSMUST00000194418.1	1	ENSMUSG00000103677	missense	L/V	403	Pcdhga4	ENSMUST00000194418.1:c.1207T>G	ENSMUSP00000142140.1:p.Leu403Val	H-2-Kb	8	10	2	RVLIHRTL	RLLIHRTL	SMM	302.51	795.683	2.63	128	0.039	373.909	929.822	2.487	3201.49	502.08	993.2	392.4	795.6828547	302.5101842	866.4430052	355.4184757	PW3352T1	1.128571429	1.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.051	128	0	0	NA	18qB3	chr18-11882623-84965428	2	1	1	0.65	2	NON-ABERRANT	1	0.156923077	sgMsh6	colon
chr7	128240104	128240104	A	G	ENSMUST00000044660.5	1	ENSMUSG00000042178	missense	E/G	198	Armc5	ENSMUST00000044660.5:c.593A>G	ENSMUSP00000040568.5:p.Glu198Gly	H-2-Kb	8	6	6	VPFLVGSL	VPFLVESL	SMM	92.414	219.149	2.371	53	0.057	320.853	795.951	2.481	1592.23	535.11	1326.6	764.8	219.1492557	92.41447486	265.3016799	106.5957771	PW3352T1	1.685714286	1.742857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.075	53	0	0	NA	7qF3	chr7-4554068-142893198	2	1	1	0.65	2	NON-ABERRANT	1	0.230769231	sgMsh6	colon
chr10	20059082	20059082	A	G	ENSMUST00000095806.9	1	ENSMUSG00000071369	missense	R/G	565	Map3k5	ENSMUST00000095806.9:c.1693A>G	ENSMUSP00000093485.3:p.Arg565Gly	H-2-Kb	8	10	2	VGFPVLIL	VRFPVLIL	NetMHCpan	191.8	2107.5	10.988	143	0.098	353.993	2102.592	5.94	4042.08	586.73	2107.5	191.8	1299.391436	272.7344509	2097.683683	435.2512229	PW3352T1	2.442857143	2.5	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.111	143	0	0	NA	10qA3	chr10-5218416-130453386	2	1	1	0.65	2	NON-ABERRANT	1	0.341538462	sgMsh6	colon
chr11	73965433	73965433	C	T	ENSMUST00000216291.1	5	ENSMUSG00000057050	missense	A/V	275	Olfr397	ENSMUST00000216291.1:c.824C>T	ENSMUSP00000150172.1:p.Ala275Val	H-2-Kb	8	10	2	MVVMYTVV	MAVMYTVV	NetMHCpan	338	221.2	0.654	99	0.04	447.554	456.847	1.021	487.37	764.41	221.2	338	492.8786429	500.8872766	426.324214	394.2212222	PW3352T1	2.385714286	2.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.051	99	0	0	NA	11qB4	chr11-3132249-121238400	2	1	1	0.65	2	NON-ABERRANT	1	0.156923077	sgMsh6	colon
chr10	20059082	20059082	A	G	ENSMUST00000095806.9	1	ENSMUSG00000071369	missense	R/G	565	Map3k5	ENSMUST00000095806.9:c.1693A>G	ENSMUSP00000093485.3:p.Arg565Gly	H-2-Kb	8	8	4	TVVGFPVL	TVVRFPVL	NetMHCpan	170.9	32.6	0.191	143	0.098	371.222	89.645	0.241	77.96	768.06	32.6	170.9	112.911974	387.0258739	101.3304567	355.4184757	PW3352T1	2.457142857	2.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.111	143	0	0	NA	10qA3	chr10-5218416-130453386	2	1	1	0.65	2	NON-ABERRANT	1	0.341538462	sgMsh6	colon
chr15	98543573	98543573	AG	A	ENSMUST00000169707.7	1	ENSMUSG00000011960	FS	L/X	605	Ccnt1	ENSMUST00000169707.7:c.1813del	ENSMUSP00000126874.1:p.Leu605PhefsTer4	H-2-Kb	9	4	8	LNFPFPPFL	LNFPFPPLP	NetMHCpan	20.4	4434.3	217.368	106	0.104	109.169	2677.64	24.527	6146.12	49.64	4434.3	20.4	424.7271271	168.6980257	920.9795777	208.0894201	PW3352T1	1.057142857	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.1038	106	0	0	NA	15qF1	chr15-6735277-101693188	2	1	1	0.65	2	NON-ABERRANT	1	0.319384615	sgMsh6	colon
chr12	3904191	3904191	C	T	ENSMUST00000020991.14	1	ENSMUSG00000020661	missense	R/C	788	Dnmt3a	ENSMUST00000020991.14:c.2362C>T	ENSMUSP00000020991.8:p.Arg788Cys	H-2-Kb	9	9	3	RACYFWGNL	RARYFWGNL	NetMHC	53.2	20.93	0.393	187	0.064	156.737	116.789	0.745	20.93	53.2	50.3	76.2	183.2778578	339.7113053	206.1816449	237.2739171	PW3352T1	0.428571429	0.428571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.062	187	0	0	NA	12qA1.1	chr12-3252726-118041214	2	1	1	0.65	2	NON-ABERRANT	1	0.190769231	sgMsh6	colon
chr7	105337101	105337101	G	A	ENSMUST00000213290.1	5	ENSMUSG00000043948	missense	P/L	205	Olfr691	ENSMUST00000213290.1:c.614C>T	ENSMUSP00000150297.1:p.Pro205Leu	H-2-Kb	9	4	8	IWYGFSVLI	IWYGFSVPI	SMM	25.651	20.142	0.785	155	0.026	56.531	38.983	0.69	44.45	66.37	44.7	100.7	20.14234359	25.65133662	33.51583163	46.69280884	PW3352T1	1.828571429	1.828571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.03	155	0	0	NA	7qE3	chr7-4554068-142893198	2	1	1	0.65	2	NON-ABERRANT	1	0.092307692	sgMsh6	colon
chr18	37686606	37686606	T	G	ENSMUST00000194418.1	1	ENSMUSG00000103677	missense	L/V	403	Pcdhga4	ENSMUST00000194418.1:c.1207T>G	ENSMUSP00000142140.1:p.Leu403Val	H-2-Kb	9	3	9	KTYGNYHRV	KTYGNYHRL	NetMHC	79.55	28.75	0.361	128	0.039	154.343	58.035	0.376	28.75	79.55	26.2	112.3	87.31925064	196.3857628	93.37916798	209.0499173	PW3352T1	-1.428571429	-1.428571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.051	128	0	0	NA	18qB3	chr18-11882623-84965428	2	1	1	0.65	2	NON-ABERRANT	1	0.156923077	sgMsh6	colon
chr8	83929665	83929665	C	T	ENSMUST00000141158.7	1	ENSMUSG00000013033	missense	T/M	199	Adgrl1	ENSMUST00000141158.7:c.596C>T	ENSMUSP00000118452.1:p.Thr199Met	H-2-Kb	9	10	2	TMYRLPNRV	TTYRLPNRV	NetMHC	139.16	232.36	1.67	124	0.04	228.924	508.013	2.219	232.36	139.16	458.7	247.9	557.3268932	209.947158	569.1804832	250.7552301	PW3352T1	-1.057142857	-0.842857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.043	124	0	0	NA	8qC2	chr8-3748601-123087228	2	1	1	0.65	2	NON-ABERRANT	1	0.132307692	sgMsh6	colon
chr11	73965433	73965433	C	T	ENSMUST00000216291.1	5	ENSMUSG00000057050	missense	A/V	275	Olfr397	ENSMUST00000216291.1:c.824C>T	ENSMUSP00000150172.1:p.Ala275Val	H-2-Kb	9	9	3	VMVVMYTVV	VMAVMYTVV	SMM	69.52	77.288	1.112	99	0.04	119.392	173.068	1.45	273.26	158.57	242.8	242.6	77.28763178	69.52003787	103.3356082	80.21396792	PW3352T1	2.385714286	2.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.051	99	0	0	NA	11qB4	chr11-3132249-121238400	2	1	1	0.65	2	NON-ABERRANT	1	0.156923077	sgMsh6	colon
chr9	38982853	38982853	G	T	ENSMUST00000214324.2	5	ENSMUSG00000057424	missense	L/M	64	Olfr934	ENSMUST00000214324.2:c.190C>A	ENSMUSP00000149799.1:p.Leu64Met	H-2-Kb	9	3	9	PMYFFLCQM	PMYFFLCQL	SMM	32.818	24.952	0.76	167	0.12	161.416	95.003	0.589	175.29	280.54	158.8	306.9	24.95226649	32.8178405	31.20685478	42.29119919	PW3352T1	1.285714286	1.557142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.124	167	0	0	NA	9qA5.1	chr9-7282188-124108155	2	2	0	0.65	2	NON-ABERRANT	1	0.381538462	sgMsh6	colon
chr11	23417709	23417709	C	A	ENSMUST00000180046.7	5	ENSMUSG00000056342	missense	S/Y	1682	Usp34	ENSMUST00000180046.7:c.5045C>A	ENSMUSP00000137430.1:p.Ser1682Tyr	H-2-Kb	9	6	6	CSLVKYSLA	CSLVKSSLA	SMM	378.538	1517.435	4.009	92	0.033	470.88	3241.931	6.885	3784.57	403.18	5471.7	817.2	1517.434661	378.5384504	2699.292823	538.5797247	PW3352T1	1.085714286	1.085714286	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.047	92	0	0	NA	11qA3.2	chr11-3132249-121238400	2	1	1	0.65	2	NON-ABERRANT	1	0.144615385	sgMsh6	colon
chr10	20059082	20059082	A	G	ENSMUST00000095806.9	1	ENSMUSG00000071369	missense	R/G	565	Map3k5	ENSMUST00000095806.9:c.1693A>G	ENSMUSP00000093485.3:p.Arg565Gly	H-2-Kb	9	7	5	VTVVGFPVL	VTVVRFPVL	NetMHCpan	163.3	25.1	0.154	143	0.098	329.878	45.524	0.138	32.13	403.31	25.1	163.3	65.78244329	354.0870144	58.91827186	305.6680173	PW3352T1	2.457142857	2.457142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.111	143	0	0	NA	10qA3	chr10-5218416-130453386	2	1	1	0.65	2	NON-ABERRANT	1	0.341538462	sgMsh6	colon
chr16	30309688	30309688	A	G	ENSMUST00000061190.7	1	ENSMUSG00000047953	missense	L/P	56	Gp5	ENSMUST00000061190.7:c.167T>C	ENSMUSP00000051895.6:p.Leu56Pro	H-2-Kb	9	5	7	TNLTHIPLF	TNLTHILLF	SMMPMBEC	312.788	364.125	1.164	97	0.052	390.197	416.027	1.066	422.69	439.9	551.8	470.8	409.3643322	340.4944207	364.1245828	312.7879401	PW3352T1	1.342857143	1.342857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.053	97	0	0	NA	16qB2	chr16-4677106-93596195	2	2	0	0.65	2	NON-ABERRANT	1	0.163076923	sgMsh6	colon
chr4	12146364	12146364	CT	C	ENSMUST00000069128.7	1	ENSMUSG00000046667	FS	F/X	779	Rbm12b1	ENSMUST00000069128.7:c.2340del	ENSMUSP00000064195.7:p.His781MetfsTer21	H-2-Db	9	24	0	YSIMSKDYL	NA	NetMHCpan	13.3	NA	NA	202	0.149	79.75	NA	NA	NA	15.1	NA	13.3	NA	149.1488812	NA	144.4009332	PW3357T1	0.1	0.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.157	202	0	0	NA	4qA1	chr4-8828216-156200568	2	1	1	0.54	2	NON-ABERRANT	1	0.581481481	sgMsh6	colon
chr1	192930715	192930715	GT	G	ENSMUST00000016344.8	1	ENSMUSG00000016200	FS	K/X	309	Syt14	ENSMUST00000016344.8:c.927del	ENSMUSP00000016344.8:p.Lys309AsnfsTer29	H-2-Kb	8	25	0	SSQKHSNL	NA	NetMHC	38.92	NA	NA	146	0.041	55.744	NA	NA	NA	38.92	NA	203.7	NA	44.8476819	NA	66.64076901	PW3357T1	-1.7	-1.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.05	146	0	0	NA	1qH6	chr1-9545447-193352278	2	2	0	0.54	2	NON-ABERRANT	1	0.185185185	sgMsh6	colon
chr19	12862546	12862546	T	C	ENSMUST00000213606.1	5	ENSMUSG00000046272	missense	I/T	257	Olfr1444	ENSMUST00000213606.1:c.770T>C	ENSMUSP00000150212.1:p.Ile257Thr	H-2-Kb	8	8	4	GTITFMYL	GTIIFMYL	NetMHC	43.69	59.88	1.371	167	0.078	61.753	75.427	1.221	59.88	43.69	155.5	63.7	84.67203545	79.56828547	66.18201718	59.80534499	PW3357T1	1.471428571	1.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.082	167	0	0	NA	19qA	chr19-5706645-59060755	2	1	1	0.54	2	NON-ABERRANT	1	0.303703704	sgMsh6	colon
chr11	74868102	74868102	G	A	ENSMUST00000057631.11	1	ENSMUSG00000038351	missense	T/M	184	Sgsm2	ENSMUST00000057631.11:c.551C>T	ENSMUSP00000050496.5:p.Thr184Met	H-2-Kb	8	6	6	CALEYMKL	CALEYTKL	NetMHCpan	46.4	49.1	1.058	114	0.053	91.653	127.034	1.386	79.59	46.93	49.1	46.4	174.4777291	136.3766443	232.1346655	205.466016	PW3357T1	0.371428571	0.371428571	TRUE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;Vardict	3	0.055	114	0	0	NA	11qB5	chr11-3132249-120955476	2	1	1	0.54	2	NON-ABERRANT	1	0.203703704	sgMsh6	colon
chr18	37486711	37486711	C	T	ENSMUST00000053856.5	NA	ENSMUSG00000046387	missense	A/V	518	Pcdhb17	ENSMUST00000053856.5:c.1553C>T	ENSMUSP00000055072.4:p.Ala518Val	H-2-Kb	8	10	2	RVLDYEAL	RALDYEAL	NetMHCpan	177.9	248.9	1.399	239	0.151	210.048	232.025	1.105	153.35	201.45	248.9	177.9	215.149331	218.6452264	269.6124854	249.310173	PW3357T1	0.757142857	0.757142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.152	239	0	0	NA	18qB3	chr18-6784725-80029339	2	1	1	0.54	2	NON-ABERRANT	1	0.562962963	sgMsh6	colon
chr4	12146364	12146364	CT	C	ENSMUST00000069128.7	1	ENSMUSG00000046667	FS	F/X	779	Rbm12b1	ENSMUST00000069128.7:c.2340del	ENSMUSP00000064195.7:p.His781MetfsTer21	H-2-Kb	8	20	0	IPFHYSIM	NA	SMM	114.747	NA	NA	202	0.149	180.426	NA	NA	NA	232.4	NA	245.8	NA	114.746646	NA	128.4517425	PW3357T1	0.328571429	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.157	202	0	0	NA	4qA1	chr4-8828216-156200568	2	1	1	0.54	2	NON-ABERRANT	1	0.581481481	sgMsh6	colon
chr14	70616087	70616087	TG	T	ENSMUST00000110984.3	5	ENSMUSG00000022099	FS	P/X	94	Dmtn	ENSMUST00000110984.3:c.281del	ENSMUSP00000106612.2:p.Pro94HisfsTer94	H-2-Kb	8	89	0	SFLQRSPL	NA	SMM	221.177	NA	NA	72	0.111	248.516	NA	NA	NA	243.67	NA	592	NA	221.1770188	NA	253.3611374	PW3357T1	-6.34E-17	-6.34E-17	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.128	72	0	0	NA	14qD2	chr14-3072210-123348696	2	2	0	0.54	2	NON-ABERRANT	1	0.474074074	sgMsh6	colon
chr2	82977443	82977443	TA	T	ENSMUST00000143764.8	5	ENSMUSG00000075249	FS	K/X	1369	Fsip2	ENSMUST00000143764.8:c.4112del	ENSMUSP00000120314.2:p.Asn1371IlefsTer63	H-2-Kb	8	20	0	KHYLHLYV	NA	NetMHCpan	201	NA	NA	104	0.058	296.008	NA	NA	NA	345.36	NA	201	NA	255.7054591	NA	336.3101696	PW3357T1	0.4	0.4	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0577	104	0	0	NA	2qD	chr2-4992200-180281766	2	1	1	0.54	2	NON-ABERRANT	1	0.213703704	sgMsh6	colon
chr16	10511964	10511964	G	A	ENSMUST00000023147.7	1	ENSMUSG00000022504	missense	R/H	704	Ciita	ENSMUST00000023147.7:c.2111G>A	ENSMUSP00000023147.6:p.Arg704His	H-2-Kb	8	9	3	VPHFLAGL	VPRFLAGL	SMM	227.374	193.081	0.849	63	0.048	296.498	201.391	0.679	142.93	352.15	209.7	356.2	193.0812048	227.3735801	251.6170116	240.8463117	PW3357T1	1	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.065	63	0	0	NA	16qA1	chr16-3948854-96819699	2	2	0	0.54	2	NON-ABERRANT	1	0.240740741	sgMsh6	colon
chr2	82977443	82977443	TA	T	ENSMUST00000143764.8	5	ENSMUSG00000075249	FS	K/X	1369	Fsip2	ENSMUST00000143764.8:c.4112del	ENSMUSP00000120314.2:p.Asn1371IlefsTer63	H-2-Kb	8	33	0	INKVFCQI	NA	NetMHCpan	115.5	NA	NA	104	0.058	302.998	NA	NA	NA	397.05	NA	115.5	NA	344.9371732	NA	261.0597994	PW3357T1	0.442857143	0.442857143	FALSE	FALSE	FALSE	1	FALSE	0	Strelka2;Vardict	2	0.0577	104	0	0	NA	2qD	chr2-4992200-180281766	2	1	1	0.54	2	NON-ABERRANT	1	0.213703704	sgMsh6	colon
chr2	82977443	82977443	TA	T	ENSMUST00000143764.8	5	ENSMUSG00000075249	FS	K/X	1369	Fsip2	ENSMUST00000143764.8:c.4112del	ENSMUSP00000120314.2:p.Asn1371IlefsTer63	H-2-Kb	8	54	0	LAFSTAWL	NA	SMMPMBEC	238.638	NA	NA	104	0.058	306.61	NA	NA	NA	489.12	NA	312.1	NA	301.1202761	NA	238.6382195	PW3357T1	1.114285714	1.114285714	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0577	104	0	0	NA	2qD	chr2-4992200-180281766	2	1	1	0.54	2	NON-ABERRANT	1	0.213703704	sgMsh6	colon
chr2	82977443	82977443	TA	T	ENSMUST00000143764.8	5	ENSMUSG00000075249	FS	K/X	1369	Fsip2	ENSMUST00000143764.8:c.4112del	ENSMUSP00000120314.2:p.Asn1371IlefsTer63	H-2-Kb	8	22	0	YLHLYVSL	NA	NetMHCpan	188.5	NA	NA	104	0.058	302.613	NA	NA	NA	625	NA	188.5	NA	348.9313575	NA	256.2949211	PW3357T1	1.471428571	1.471428571	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0577	104	0	0	NA	2qD	chr2-4992200-180281766	2	1	1	0.54	2	NON-ABERRANT	1	0.213703704	sgMsh6	colon
chr19	12862546	12862546	T	C	ENSMUST00000213606.1	5	ENSMUSG00000046272	missense	I/T	257	Olfr1444	ENSMUST00000213606.1:c.770T>C	ENSMUSP00000150212.1:p.Ile257Thr	H-2-Kb	8	10	2	ITFMYLQP	IIFMYLQP	SMMPMBEC	69.301	72.234	1.042	167	0.078	219.523	361.823	1.648	821.37	811.22	637.2	352.6	86.44502416	86.44502416	72.2337231	69.30107956	PW3357T1	0.2	1.071428571	FALSE	FALSE	TRUE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.082	167	0	0	NA	19qA	chr19-5706645-59060755	2	1	1	0.54	2	NON-ABERRANT	1	0.303703704	sgMsh6	colon
chr2	82977443	82977443	TA	T	ENSMUST00000143764.8	5	ENSMUSG00000075249	FS	K/X	1369	Fsip2	ENSMUST00000143764.8:c.4112del	ENSMUSP00000120314.2:p.Asn1371IlefsTer63	H-2-Kb	9	17	0	IQIKHYLHL	NA	NetMHCpan	16.8	NA	NA	104	0.058	47.393	NA	NA	NA	19.06	NA	16.8	NA	89.35317727	NA	75.72686885	PW3357T1	0.071428571	0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0577	104	0	0	NA	2qD	chr2-4992200-180281766	2	1	1	0.54	2	NON-ABERRANT	1	0.213703704	sgMsh6	colon
chr6	125081718	125081718	A	G	ENSMUST00000171989.2	2	ENSMUSG00000067714	missense	D/G	134	Lpar5	ENSMUST00000171989.2:c.401A>G	ENSMUSP00000132511.1:p.Asp134Gly	H-2-Kb	9	8	4	INVGRYAAI	INVDRYAAI	NetMHCpan	26.8	24.4	0.91	115	0.052	45.213	46.567	1.03	27.33	27.44	24.4	26.8	89.97254391	84.35483883	65.80365246	62.98686601	PW3357T1	0.871428571	0.871428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.064	115	0	0	NA	6qF2	chr6-3994124-145865145	2	1	1	0.54	2	NON-ABERRANT	1	0.237037037	sgMsh6	colon
chr6	86946909	86946909	TG	T	ENSMUST00000089519.12	1	ENSMUSG00000057230	FS	G/X	263	Aak1	ENSMUST00000089519.12:c.790del	ENSMUSP00000086948.6:p.Glu264ArgfsTer74	H-2-Kb	9	70	0	QMYRTLPFL	NA	NetMHC	73.48	NA	NA	156	0.045	120.375	NA	NA	NA	73.48	NA	139.1	NA	101.6506125	NA	213.4273146	PW3357T1	0.328571429	0.328571429	TRUE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.051	156	0	0	NA	6qD1	chr6-3994124-145865145	2	1	1	0.54	2	NON-ABERRANT	1	0.188888889	sgMsh6	colon
chr2	86356007	86356007	G	A	ENSMUST00000216547.1	5	ENSMUSG00000075188	missense	A/V	125	Olfr1056	ENSMUST00000216547.1:c.374C>T	ENSMUSP00000149545.1:p.Ala125Val	H-2-Kb	9	4	8	MAYDRYVVI	MAYDRYVAI	NetMHCpan	27.8	14.4	0.518	213	0.066	48.386	30.259	0.625	27.08	77.04	14.4	27.8	39.27443988	55.34902819	33.43874735	41.42380608	PW3357T1	0.328571429	0.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.073	213	0	0	NA	2qD	chr2-4992200-180281766	2	1	1	0.54	2	NON-ABERRANT	1	0.27037037	sgMsh6	colon
chr16	10511964	10511964	G	A	ENSMUST00000023147.7	1	ENSMUSG00000022504	missense	R/H	704	Ciita	ENSMUST00000023147.7:c.2111G>A	ENSMUSP00000023147.6:p.Arg704His	H-2-Kb	9	8	4	GVPHFLAGL	GVPRFLAGL	NetMHC	81.18	33.78	0.416	63	0.048	303.436	258.389	0.852	33.78	81.18	120.4	253.6	396.378418	353.2726369	523.901932	446.9407979	PW3357T1	1	1.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.065	63	0	0	NA	16qA1	chr16-3948854-96819699	2	2	0	0.54	2	NON-ABERRANT	1	0.240740741	sgMsh6	colon
chr17	19393758	19393758	A	G	ENSMUST00000176107.2	5	ENSMUSG00000090304	missense	D/G	580	Vmn2r99	ENSMUST00000176107.2:c.1739A>G	ENSMUSP00000135236.1:p.Asp580Gly	H-2-Kb	9	5	7	SFLAYEGPL	SFLAYEDPL	NetMHC	85.16	216.06	2.537	410	0.063	216.931	366.219	1.688	216.06	85.16	902.3	303.2	347.6241981	211.4024421	384.8132346	222.4590099	PW3357T1	0.371428571	0.371428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;MuSe;Vardict	3	0.06	410	0	0	NA	17qA3.2	chr17-3505882-87986181	2	2	0	0.54	2	NON-ABERRANT	1	0.222222222	sgMsh6	colon
chr1	161060849	161060849	G	A	ENSMUST00000035430.3	1	ENSMUSG00000026709	missense	A/V	167	Dars2	ENSMUST00000035430.3:c.500C>T	ENSMUSP00000041851.3:p.Ala167Val	H-2-Kb	9	11	1	VLRLQYRYL	ALRLQYRYL	NetMHC	127.08	580.78	4.57	96	0.042	285.72	1004.113	3.514	580.78	127.08	938.9	211.6	1069.325688	359.8404656	1303.917158	472.3348608	PW3357T1	-1.071428571	-0.285714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.055	96	0	0	NA	1qH2.1	chr1-9545447-193352278	2	2	0	0.54	2	NON-ABERRANT	1	0.203703704	sgMsh6	colon
chr2	89418168	89418168	C	A	ENSMUST00000216762.1	5	ENSMUSG00000075088	missense	D/Y	82	Olfr1239	ENSMUST00000216762.1:c.244G>T	ENSMUSP00000150225.1:p.Asp82Tyr	H-2-Kb	9	4	8	VTPNMIIYL	VTPNMIIDL	NetMHC	143.82	604.9	4.206	156	0.032	287.942	772.577	2.683	604.9	143.82	746.7	168.4	918.5652252	407.4834739	798.4541822	453.1583638	PW3357T1	1.185714286	1.328571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.04	156	0	0	NA	2qE1	chr2-4992200-180281766	2	1	1	0.54	2	NON-ABERRANT	1	0.148148148	sgMsh6	colon
chr19	12862546	12862546	T	C	ENSMUST00000213606.1	5	ENSMUSG00000046272	missense	I/T	257	Olfr1444	ENSMUST00000213606.1:c.770T>C	ENSMUSP00000150212.1:p.Ile257Thr	H-2-Kb	9	10	2	ITFMYLQPS	IIFMYLQPS	SMM	99.795	84.161	0.843	167	0.078	125.683	166.471	1.325	218.06	175.76	229.3	125.4	84.16082809	99.79527977	114.8814742	125.9650316	PW3357T1	0.185714286	1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.082	167	0	0	NA	19qA	chr19-5706645-59060755	2	1	1	0.54	2	NON-ABERRANT	1	0.303703704	sgMsh6	colon
chr4	12146364	12146364	CT	C	ENSMUST00000069128.7	1	ENSMUSG00000046667	FS	F/X	779	Rbm12b1	ENSMUST00000069128.7:c.2340del	ENSMUSP00000064195.7:p.His781MetfsTer21	H-2-Kb	9	19	0	LIPFHYSIM	NA	SMM	141.615	NA	NA	202	0.149	173.708	NA	NA	NA	204.58	NA	187	NA	141.6152424	NA	160.4168559	PW3357T1	0.328571429	0.7	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.157	202	0	0	NA	4qA1	chr4-8828216-156200568	2	1	1	0.54	2	NON-ABERRANT	1	0.581481481	sgMsh6	colon
chr6	86946909	86946909	TG	T	ENSMUST00000089519.12	1	ENSMUSG00000057230	FS	G/X	263	Aak1	ENSMUST00000089519.12:c.790del	ENSMUSP00000086948.6:p.Glu264ArgfsTer74	H-2-Kb	9	73	0	RTLPFLQNF	NA	NetMHC	213.1	NA	NA	156	0.045	484.536	NA	NA	NA	213.1	NA	264.2	NA	704.8715793	NA	910.4372116	PW3357T1	0.657142857	0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.051	156	0	0	NA	6qD1	chr6-3994124-145865145	2	1	1	0.54	2	NON-ABERRANT	1	0.188888889	sgMsh6	colon
chr6	86946909	86946909	TG	T	ENSMUST00000089519.12	1	ENSMUSG00000057230	FS	G/X	263	Aak1	ENSMUST00000089519.12:c.790del	ENSMUSP00000086948.6:p.Glu264ArgfsTer74	H-2-Kb	9	29	0	VILKICTAL	NA	NetMHCpan	310.4	NA	NA	156	0.045	406.408	NA	NA	NA	311.34	NA	310.4	NA	558.6116644	NA	501.4758232	PW3357T1	1.685714286	2.128571429	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Vardict	2	0.051	156	0	0	NA	6qD1	chr6-3994124-145865145	2	1	1	0.54	2	NON-ABERRANT	1	0.188888889	sgMsh6	colon
chr19	12862546	12862546	T	C	ENSMUST00000213606.1	5	ENSMUSG00000046272	missense	I/T	257	Olfr1444	ENSMUST00000213606.1:c.770T>C	ENSMUSP00000150212.1:p.Ile257Thr	H-2-Kb	9	5	7	IFYGTITFM	IFYGTIIFM	NetMHC	332.45	626.53	1.885	167	0.078	381.264	549.432	1.441	626.53	332.45	1150.5	519.3	351.6494966	332.7438214	472.3348608	429.783759	PW3357T1	0.871428571	1.242857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.082	167	0	0	NA	19qA	chr19-5706645-59060755	2	1	1	0.54	2	NON-ABERRANT	1	0.303703704	sgMsh6	colon
chr4	12146364	12146364	CT	C	ENSMUST00000069128.7	1	ENSMUSG00000046667	FS	F/X	779	Rbm12b1	ENSMUST00000069128.7:c.2340del	ENSMUSP00000064195.7:p.His781MetfsTer21	H-2-Kb	9	14	0	VIKSYLIPF	NA	SMM	150.006	NA	NA	202	0.149	220.74	NA	NA	NA	388.94	NA	268	NA	150.006473	NA	173.4802343	PW3357T1	0.5	1.571428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.157	202	0	0	NA	4qA1	chr4-8828216-156200568	2	1	1	0.54	2	NON-ABERRANT	1	0.581481481	sgMsh6	colon
chr6	86946909	86946909	TG	T	ENSMUST00000089519.12	1	ENSMUSG00000057230	FS	G/X	263	Aak1	ENSMUST00000089519.12:c.790del	ENSMUSP00000086948.6:p.Glu264ArgfsTer74	H-2-Kb	9	52	0	FTRFHTSHL	NA	SMM	352.46	NA	NA	156	0.045	416.857	NA	NA	NA	448.9	NA	460.5	NA	352.4601324	NA	384.8132346	PW3357T1	-0.828571429	-0.614285714	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.051	156	0	0	NA	6qD1	chr6-3994124-145865145	2	1	1	0.54	2	NON-ABERRANT	1	0.188888889	sgMsh6	colon
chr17	18167345	18167345	C	T	ENSMUST00000169686.2	5	ENSMUSG00000091350	missense	A/V	204	Vmn2r92	ENSMUST00000169686.2:c.611C>T	ENSMUSP00000128685.1:p.Ala204Val	H-2-Kb	9	11	1	VIVSLMVHF	AIVSLMVHF	SMM	432.623	1285.612	2.972	259	0.031	497.304	1393.836	2.803	1502.06	531.96	2804.1	1119.6	1285.612244	432.6233939	1277.173798	462.6472659	PW3357T1	1.842857143	3.142857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.037	259	0	0	NA	17qA3.2	chr17-3505882-87986181	2	2	0	0.54	2	NON-ABERRANT	1	0.137037037	sgMsh6	colon
chr2	48898564	48898564	TA	T	ENSMUST00000063886.3	1	ENSMUSG00000052155	FS	K/X	435	Acvr2a	ENSMUST00000063886.3:c.1310del	ENSMUSP00000067305.3:p.Lys437ArgfsTer5	H-2-Kb	9	8	6	VVHKKRGLF	VVHKKKRPV	SMM	417.936	621.026	1.486	146	0.062	493.429	698.682	1.416	685.74	546.05	4295.7	2279.7	621.0263106	417.9362099	711.6230389	440.8085403	PW3357T1	-1.328571429	-1.071428571	FALSE	FALSE	FALSE	0	FALSE	0	Strelka2;Vardict	2	0.0616	146	0	0	NA	2qC1.1	chr2-4992200-180281766	2	1	1	0.54	2	NON-ABERRANT	1	0.228148148	sgMsh6	colon
chr11	6324905	6324905	G	A	ENSMUST00000093350.9	1	ENSMUSG00000020456	missense	R/Q	178	Ogdh	ENSMUST00000093350.9:c.533G>A	ENSMUSP00000091041.3:p.Arg178Gln	H-2-Kb	9	5	7	VFKERLQML	VFKERLRML	SMMPMBEC	274.948	389.269	1.416	273	0.037	448.245	498.101	1.111	583.05	589.51	2267.9	1554.4	413.1521337	306.9799422	389.2691619	274.9476424	PW3357T1	-0.842857143	-0.657142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.039	273	0	0	NA	11qA1	chr11-3132249-120955476	2	1	1	0.54	2	NON-ABERRANT	1	0.144444444	sgMsh6	colon
chr14	70616087	70616087	TG	T	ENSMUST00000110984.3	5	ENSMUSG00000022099	FS	P/X	94	Dmtn	ENSMUST00000110984.3:c.281del	ENSMUSP00000106612.2:p.Pro94HisfsTer94	H-2-Kb	9	88	0	PSFLQRSPL	NA	SMM	184.124	NA	NA	72	0.111	465.918	NA	NA	NA	671.07	NA	785	NA	184.1238299	NA	260.7654204	PW3357T1	-6.34E-17	-6.34E-17	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.128	72	0	0	NA	14qD2	chr14-3072210-123348696	2	2	0	0.54	2	NON-ABERRANT	1	0.474074074	sgMsh6	colon
chr2	88274867	88274867	G	GA	ENSMUST00000216887.1	NA	ENSMUSG00000075132	FS	-/X	60-61	Olfr1173	ENSMUST00000216887.1:c.180dup	ENSMUSP00000149617.1:p.Leu61SerfsTer13	H-2-Kb	8	16	0	FIFGFMLF	NA	NetMHC	222.32	NA	NA	289	0.166	263.006	NA	NA	NA	222.32	NA	474.6	NA	271.4813499	NA	254.5305993	PW3362T1	2.6	2.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.159	289	0	0	NA	2qD	chr2-4992200-180281766	2	1	1	0.59	1.999974038	NON-ABERRANT	1	0.538976054	sgMsh3	colon
chr2	88274867	88274867	G	GA	ENSMUST00000216887.1	NA	ENSMUSG00000075132	FS	-/X	60-61	Olfr1173	ENSMUST00000216887.1:c.180dup	ENSMUSP00000149617.1:p.Leu61SerfsTer13	H-2-Kb	8	14	0	PSFIFGFM	NA	SMM	146.467	NA	NA	289	0.166	152.68	NA	NA	NA	262.37	NA	146.6	NA	146.4670721	NA	158.7596015	PW3362T1	1.942857143	1.942857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.159	289	0	0	NA	2qD	chr2-4992200-180281766	2	1	1	0.59	1.999974038	NON-ABERRANT	1	0.538976054	sgMsh3	colon
chr2	88274867	88274867	G	GA	ENSMUST00000216887.1	NA	ENSMUSG00000075132	FS	-/X	60-61	Olfr1173	ENSMUST00000216887.1:c.180dup	ENSMUSP00000149617.1:p.Leu61SerfsTer13	H-2-Kb	9	14	0	PSFIFGFML	NA	SMM	173.424	NA	NA	289	0.166	278.628	NA	NA	NA	407.2	NA	359.9	NA	173.4243199	NA	197.3558481	PW3362T1	2.6	2.6	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.159	289	0	0	NA	2qD	chr2-4992200-180281766	2	1	1	0.59	1.999974038	NON-ABERRANT	1	0.538976054	sgMsh3	colon
chr5	8812659	8812659	G	A	ENSMUST00000009058.9	1	ENSMUSG00000028970	missense	A/T	114	Abcb1b	ENSMUST00000009058.9:c.340G>A	ENSMUSP00000009058.5:p.Ala114Thr	H-2-Kb	8	10	2	YTYYYTGI	YAYYYTGI	NetMHCpan	8.6	7.1	0.826	190	0.032	35.515	53.271	1.5	11.32	10.81	7.1	8.6	105.8619769	68.50779666	95.22259222	60.21989584	PW3362T2	-0.171428571	-0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.039	190	0	0	NA	5qA1	chr5-3603133-150534477	2	2	0	0.53	2	NON-ABERRANT	1	0.147169811	sgMsh3	colon
chr12	116000440	116000440	G	T	ENSMUST00000103552.1	NA	ENSMUSG00000096150	missense	L/I	8	Ighv1-85	ENSMUST00000103552.1:c.22C>A	ENSMUSP00000100333.1:p.Leu8Ile	H-2-Kb	8	3	6	WSWIFIFL	WSWIFLFL	SMMPMBEC	15.913	18.696	1.175	552	0.062	34.323	41.442	1.207	59.67	48.66	422.9	508.8	23.21346655	19.98664966	18.6956255	15.91255801	PW3362T2	2.385714286	2.385714286	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.064	552	0	0	NA	12qF2	chr12-4134424-118301289	2	1	1	0.53	2	NON-ABERRANT	1	0.241509434	sgMsh3	colon
chr18	34313609	34313609	AT	A	ENSMUST00000079362.12	1	ENSMUSG00000005871	FS	I/X	1186	Apc	ENSMUST00000079362.12:c.3559del	ENSMUSP00000078337.5:p.Ser1187LeufsTer76	H-2-Kb	8	40	0	RIQLYLHL	NA	NetMHC	54.5	NA	NA	200	0.02	83.588	NA	NA	NA	54.5	NA	86.5	NA	80.67519058	NA	95.44210297	PW3362T2	1.128571429	1.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.027	200	0	0	NA	18qB1	chr18-25505072-80194980	2	1	1	0.53	2	NON-ABERRANT	1	0.101886792	sgMsh3	colon
chr18	34313609	34313609	AT	A	ENSMUST00000079362.12	1	ENSMUSG00000005871	FS	I/X	1186	Apc	ENSMUST00000079362.12:c.3559del	ENSMUSP00000078337.5:p.Ser1187LeufsTer76	H-2-Kb	8	34	0	ISLQAARI	NA	NetMHC	59.87	NA	NA	200	0.02	92.219	NA	NA	NA	59.87	NA	168.2	NA	96.99291239	NA	87.44601036	PW3362T2	0.442857143	0.442857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.027	200	0	0	NA	18qB1	chr18-25505072-80194980	2	1	1	0.53	2	NON-ABERRANT	1	0.101886792	sgMsh3	colon
chr5	8812659	8812659	G	A	ENSMUST00000009058.9	1	ENSMUSG00000028970	missense	A/T	114	Abcb1b	ENSMUST00000009058.9:c.340G>A	ENSMUSP00000009058.5:p.Ala114Thr	H-2-Kb	8	8	4	AIYTYYYT	AIYAYYYT	NetMHC	60.23	68.98	1.145	190	0.032	87.157	91.826	1.054	68.98	60.23	158.6	131.5	101.0974031	99.0238939	82.55435717	75.29046857	PW3362T2	-0.3	0.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.039	190	0	0	NA	5qA1	chr5-3603133-150534477	2	2	0	0.53	2	NON-ABERRANT	1	0.147169811	sgMsh3	colon
chr12	116000440	116000440	G	T	ENSMUST00000103552.1	NA	ENSMUSG00000096150	missense	L/I	8	Ighv1-85	ENSMUST00000103552.1:c.22C>A	ENSMUSP00000100333.1:p.Leu8Ile	H-2-Kb	9	3	6	WSWIFIFLL	WSWIFLFLL	NetMHC	124.95	88.64	0.709	552	0.062	145.164	95.22	0.656	88.64	124.95	1205.2	1175.8	93.77995068	149.3172559	96.66071427	141.0100284	PW3362T2	3.042857143	3.042857143	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.064	552	0	0	NA	12qF2	chr12-4134424-118301289	2	1	1	0.53	2	NON-ABERRANT	1	0.241509434	sgMsh3	colon
chr5	8812659	8812659	G	A	ENSMUST00000009058.9	1	ENSMUSG00000028970	missense	A/T	114	Abcb1b	ENSMUST00000009058.9:c.340G>A	ENSMUSP00000009058.5:p.Ala114Thr	H-2-Kb	9	9	3	IYTYYYTGI	IYAYYYTGI	NetMHC	135.59	103.66	0.765	190	0.032	163.311	112.375	0.688	103.66	135.59	85.1	156.7	121.0904798	176.2422384	128.0117987	169.9221522	PW3362T2	-0.171428571	-0.171428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.039	190	0	0	NA	5qA1	chr5-3603133-150534477	2	2	0	0.53	2	NON-ABERRANT	1	0.147169811	sgMsh3	colon
chr5	8812659	8812659	G	A	ENSMUST00000009058.9	1	ENSMUSG00000028970	missense	A/T	114	Abcb1b	ENSMUST00000009058.9:c.340G>A	ENSMUSP00000009058.5:p.Ala114Thr	H-2-Kb	9	8	4	AIYTYYYTG	AIYAYYYTG	SMMPMBEC	145.295	173.081	1.191	190	0.032	173.333	196.193	1.132	370.79	310.8	205.7	179.9	186.6852475	166.7669554	173.0812408	145.2947761	PW3362T2	-1	0.057142857	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.039	190	0	0	NA	5qA1	chr5-3603133-150534477	2	2	0	0.53	2	NON-ABERRANT	1	0.147169811	sgMsh3	colon
chr18	34313609	34313609	AT	A	ENSMUST00000079362.12	1	ENSMUSG00000005871	FS	I/X	1186	Apc	ENSMUST00000079362.12:c.3559del	ENSMUSP00000078337.5:p.Ser1187LeufsTer76	H-2-Kb	9	63	0	MARLKKALL	NA	SMM	315.58	NA	NA	200	0.02	379.803	NA	NA	NA	359.43	NA	1664	NA	315.5803838	NA	400.1750427	PW3362T2	0.128571429	0.128571429	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Vardict	2	0.027	200	0	0	NA	18qB1	chr18-25505072-80194980	2	1	1	0.53	2	NON-ABERRANT	1	0.101886792	sgMsh3	colon
chr7	85221855	85221855	G	A	ENSMUST00000061074.9	5	ENSMUSG00000096861	missense	A/V	740	Vmn2r68	ENSMUST00000061074.9:c.2219C>T	ENSMUSP00000129411.1:p.Ala740Val	H-2-Kb	8	8	4	SVIVFYCV	SVIAFYCV	NetMHC	65.55	75.36	1.15	371	0.191	160.146	139.539	0.871	75.36	65.55	106.2	171	172.8781076	165.8593656	181.861178	154.4329616	PW3363T2	3.014285714	3.014285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.194	371	0	0	NA	7qD3	chr7-4477867-141858900	2	2	0	0.48	2	NON-ABERRANT;EXCESSIVE LOH	1	0.808333333	sgMsh3	colon
chr7	85221855	85221855	G	A	ENSMUST00000061074.9	5	ENSMUSG00000096861	missense	A/V	740	Vmn2r68	ENSMUST00000061074.9:c.2219C>T	ENSMUSP00000129411.1:p.Ala740Val	H-2-Kb	8	9	3	VIVFYCVL	VIAFYCVL	SMM	37.475	55.685	1.486	371	0.191	43.763	70.374	1.608	201.56	110.5	43.3	43.7	55.68522772	37.47485835	85.06286381	43.82682402	PW3363T2	2.957142857	3.014285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.194	371	0	0	NA	7qD3	chr7-4477867-141858900	2	2	0	0.48	2	NON-ABERRANT;EXCESSIVE LOH	1	0.808333333	sgMsh3	colon
chr10	78443840	78443840	C	A	ENSMUST00000041616.14	1	ENSMUSG00000032788	missense	G/W	234	Pdxk	ENSMUST00000041616.14:c.700G>T	ENSMUSP00000038540.8:p.Gly234Trp	H-2-Kb	8	10	2	TWDLFAAM	TGDLFAAM	SMMPMBEC	396.954	193.526	0.488	63	0.048	460.507	247.69	0.538	281.22	462.09	574.6	855.9	214.1608096	458.9231861	193.5263029	396.9538331	PW3363T2	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.066	63	0	0	NA	10qC1	chr10-8756618-130453386	2	2	0	0.48	2	NON-ABERRANT;EXCESSIVE LOH	1	0.275	sgMsh3	colon
chr7	85221855	85221855	G	A	ENSMUST00000061074.9	5	ENSMUSG00000096861	missense	A/V	740	Vmn2r68	ENSMUST00000061074.9:c.2219C>T	ENSMUSP00000129411.1:p.Ala740Val	H-2-Kb	9	8	4	SVIVFYCVL	SVIAFYCVL	NetMHC	18.89	20.5	1.085	371	0.191	35.141	45.656	1.299	20.5	18.89	13.6	25.5	70.81251187	44.78267173	78.02791461	56.91804832	PW3363T2	2.957142857	3.014285714	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.194	371	0	0	NA	7qD3	chr7-4477867-141858900	2	2	0	0.48	2	NON-ABERRANT;EXCESSIVE LOH	1	0.808333333	sgMsh3	colon
chr10	78443840	78443840	C	A	ENSMUST00000041616.14	1	ENSMUSG00000032788	missense	G/W	234	Pdxk	ENSMUST00000041616.14:c.700G>T	ENSMUSP00000038540.8:p.Gly234Trp	H-2-Kb	9	10	2	TWDLFAAML	TGDLFAAML	SMM	250.098	997.953	3.99	63	0.048	316.485	767.232	2.424	251.16	254.31	585.5	839.5	997.9527977	250.097874	948.964574	378.6604965	PW3363T2	1.771428571	1.771428571	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.066	63	0	0	NA	10qC1	chr10-8756618-130453386	2	2	0	0.48	2	NON-ABERRANT;EXCESSIVE LOH	1	0.275	sgMsh3	colon
chr7	85221855	85221855	G	A	ENSMUST00000061074.9	5	ENSMUSG00000096861	missense	A/V	740	Vmn2r68	ENSMUST00000061074.9:c.2219C>T	ENSMUSP00000129411.1:p.Ala740Val	H-2-Kb	9	11	1	VFYCVLGYM	AFYCVLGYM	SMM	170.651	507.119	2.972	371	0.191	240.948	638.987	2.652	761.26	294.72	1192.9	532.3	507.1191374	170.6514568	516.713728	187.1759302	PW3363T2	1.342857143	2.257142857	FALSE	FALSE	FALSE	1	FALSE	0	Mutect2;Strelka2;MuSe;Vardict	4	0.194	371	0	0	NA	7qD3	chr7-4477867-141858900	2	2	0	0.48	2	NON-ABERRANT;EXCESSIVE LOH	1	0.808333333	sgMsh3	colon
chr10	78443840	78443840	C	A	ENSMUST00000041616.14	1	ENSMUSG00000032788	missense	G/W	234	Pdxk	ENSMUST00000041616.14:c.700G>T	ENSMUSP00000038540.8:p.Gly234Trp	H-2-Kb	9	9	3	GTWDLFAAM	GTGDLFAAM	NetMHCpan	289.9	2193.8	7.567	63	0.048	444.587	1759.239	3.957	2866.93	476.84	2193.8	289.9	1324.677013	515.3591605	1077.085055	412.3348098	PW3363T2	1.1	1.1	FALSE	FALSE	FALSE	0	FALSE	0	Mutect2;Strelka2;Vardict	3	0.066	63	0	0	NA	10qC1	chr10-8756618-130453386	2	2	0	0.48	2	NON-ABERRANT;EXCESSIVE LOH	1	0.275	sgMsh3	colon