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["Supplementary Table S10. High confidence MHC-I binding SARS-COV-2 peptides as candidates for cross-reactivity with allergen peptides"]
[]
["Seq #","Peptide start","Peptide end","Peptide","IC50","Allele","SARS-CoV-2_Peptide_ID","SARS-CoV-2_Peptide_sequence"]
[17,4,12,"NIFGTVYEK",6,"HLA-A*68:01","R1AB_SARS2_Replicase_poly_sliding:6628-6642","WLTNIFGTVYEKLKP"]
[28,7,15,"YTVELGTEV",9.4,"HLA-A*02:06","R1A_SARS2_Replicase_poly_sliding:1901-1915","NEKCSAYTVELGTEV"]
[28,7,15,"YTVELGTEV",10.8,"HLA-A*68:02","R1A_SARS2_Replicase_poly_sliding:1901-1915","NEKCSAYTVELGTEV"]
[34,3,11,"LASHMYCSF",10.8,"HLA-B*15:03","R1A_SARS2_Replicase_poly_sliding:916-930","FKLASHMYCSFYPPD"]
[43,4,12,"HEGKTFYVL",11,"HLA-B*40:02","SPIKE_SARS2_Spike_glyco_sliding:276-290","HNSHEGKTFYVLPND"]
[24,7,15,"GETLPTEVL",11.9,"HLA-B*40:01","R1AB_SARS2_Replicase_poly_sliding:613-627","EIIFLEGETLPTEVL"]
[18,7,15,"TVYEKLKPV",13.4,"HLA-A*02:06","R1AB_SARS2_Replicase_poly_sliding:6626-6640","LTNIFGTVYEKLKPV"]
[34,4,12,"ASHMYCSFY",13.9,"HLA-A*30:02","R1A_SARS2_Replicase_poly_sliding:916-930","FKLASHMYCSFYPPD",{"$nulls":4},"High Confidence IC50< 50nm"]
[43,4,12,"HEGKTFYVL",13.9,"HLA-B*40:01","SPIKE_SARS2_Spike_glyco_sliding:276-290","HNSHEGKTFYVLPND"]
[17,4,12,"NIFGTVYEK",24,"HLA-A*11:01","R1AB_SARS2_Replicase_poly_sliding:6628-6642","WLTNIFGTVYEKLKP"]
[34,3,11,"LASHMYCSF",24.5,"HLA-B*35:01","R1A_SARS2_Replicase_poly_sliding:916-930","FKLASHMYCSFYPPD"]
[18,7,15,"TVYEKLKPV",26,"HLA-A*68:02","R1AB_SARS2_Replicase_poly_sliding:6626-6640","LTNIFGTVYEKLKPV"]
[17,1,9,"WLTNIFGTV",34.1,"HLA-A*02:01","R1AB_SARS2_Replicase_poly_sliding:6628-6642","WLTNIFGTVYEKLKP"]
[17,1,9,"WLTNIFGTV",34.7,"HLA-A*02:06","R1AB_SARS2_Replicase_poly_sliding:6628-6642","WLTNIFGTVYEKLKP"]
[17,2,10,"LTNIFGTVY",35.7,"HLA-B*15:03","R1AB_SARS2_Replicase_poly_sliding:6628-6642","WLTNIFGTVYEKLKP"]
[34,3,11,"LASHMYCSF",39.1,"HLA-B*15:25","R1A_SARS2_Replicase_poly_sliding:916-930","FKLASHMYCSFYPPD"]
[17,2,10,"LTNIFGTVY",39.8,"HLA-B*15:25","R1AB_SARS2_Replicase_poly_sliding:6628-6642","WLTNIFGTVYEKLKP"]
[18,7,15,"TVYEKLKPV",47.8,"HLA-A*02:01","R1AB_SARS2_Replicase_poly_sliding:6626-6640","LTNIFGTVYEKLKPV"]
[34,3,11,"LASHMYCSF",48.1,"HLA-B*15:01","R1A_SARS2_Replicase_poly_sliding:916-930","FKLASHMYCSFYPPD"]
[34,4,12,"ASHMYCSFY",49,"HLA-B*15:03","R1A_SARS2_Replicase_poly_sliding:916-930","FKLASHMYCSFYPPD"]
[34,3,11,"LASHMYCSF",56.3,"HLA-B*15:02","R1A_SARS2_Replicase_poly_sliding:916-930","FKLASHMYCSFYPPD"]
[34,4,12,"ASHMYCSFY",60.6,"HLA-A*29:02","R1A_SARS2_Replicase_poly_sliding:916-930","FKLASHMYCSFYPPD"]
[34,4,12,"ASHMYCSFY",60.7,"HLA-B*15:25","R1A_SARS2_Replicase_poly_sliding:916-930","FKLASHMYCSFYPPD"]
[24,7,15,"GETLPTEVL",61.1,"HLA-B*40:02","R1AB_SARS2_Replicase_poly_sliding:613-627","EIIFLEGETLPTEVL"]
[17,2,10,"LTNIFGTVY",64.6,"HLA-A*01:01","R1AB_SARS2_Replicase_poly_sliding:6628-6642","WLTNIFGTVYEKLKP"]
[34,3,11,"LASHMYCSF",66.1,"HLA-B*58:01","R1A_SARS2_Replicase_poly_sliding:916-930","FKLASHMYCSFYPPD"]
[17,2,10,"LTNIFGTVY",73.7,"HLA-B*15:01","R1AB_SARS2_Replicase_poly_sliding:6628-6642","WLTNIFGTVYEKLKP"]
[12,2,10,"AVVKIYCPA",74.7,"HLA-A*02:06","R1AB_SARS2_Replicase_poly_sliding:6626-6640","NAVVKIYCPACHNSE"]
[17,2,10,"LTNIFGTVY",79.2,"HLA-A*29:02","R1AB_SARS2_Replicase_poly_sliding:6628-6642","WLTNIFGTVYEKLKP"]
[34,4,12,"ASHMYCSFY",86.2,"HLA-B*15:01","R1A_SARS2_Replicase_poly_sliding:916-930","FKLASHMYCSFYPPD"]
[23,7,15,"EKFKEGVEF",93,"HLA-B*15:03","R1AB_SARS2_Replicase_poly_sliding:614-628","VLDWLEEKFKEGVEF"]
[17,2,10,"LTNIFGTVY",101.6,"HLA-A*30:02","R1AB_SARS2_Replicase_poly_sliding:6628-6642","WLTNIFGTVYEKLKP"]
[28,7,15,"YTVELGTEV",104.3,"HLA-A*02:01","R1A_SARS2_Replicase_poly_sliding:1901-1915","NEKCSAYTVELGTEV"]
[43,4,12,"HEGKTFYVL",107.3,"HLA-B*18:01","SPIKE_SARS2_Spike_glyco_sliding:276-290","HNSHEGKTFYVLPND"]
[13,7,15,"CPACHNSEV",126.7,"HLA-B*56:01","R1AB_SARS2_Replicase_poly_sliding:6627-6641","AVVKIYCPACHNSEV"]
[28,1,9,"NEKCSAYTV",140.1,"HLA-B*40:02","R1A_SARS2_Replicase_poly_sliding:1901-1915","NEKCSAYTVELGTEV"]
[34,6,14,"HMYCSFYPP",151.4,"HLA-A*02:06","R1A_SARS2_Replicase_poly_sliding:916-930","FKLASHMYCSFYPPD"]
[17,5,13,"IFGTVYEKL",165.2,"HLA-A*23:01","R1AB_SARS2_Replicase_poly_sliding:6628-6642","WLTNIFGTVYEKLKP"]
[17,4,12,"NIFGTVYEK",170.6,"HLA-A*03:01","R1AB_SARS2_Replicase_poly_sliding:6628-6642","WLTNIFGTVYEKLKP"]
[34,4,12,"ASHMYCSFY",173.1,"HLA-A*30:01","R1A_SARS2_Replicase_poly_sliding:916-930","FKLASHMYCSFYPPD"]
[17,2,10,"LTNIFGTVY",177.9,"HLA-B*15:02","R1AB_SARS2_Replicase_poly_sliding:6628-6642","WLTNIFGTVYEKLKP"]
[6,7,15,"FIDTKRGVY",178.7,"HLA-A*01:01","R1AB_SARS2_Replicase_poly_sliding:6626-6640","LSEQLDFIDTKRGVY"]
[27,5,13,"LEQPTSEAV",182.9,"HLA-B*40:02","R1AB_SARS2_Replicase_poly_sliding:1901-1915","DLQPLEQPTSEAVEA"]
[17,2,10,"LTNIFGTVY",185.4,"HLA-B*35:01","R1AB_SARS2_Replicase_poly_sliding:6628-6642","WLTNIFGTVYEKLKP"]
[13,7,15,"CPACHNSEV",187,"HLA-B*07:02","R1AB_SARS2_Replicase_poly_sliding:6627-6641","AVVKIYCPACHNSEV"]
[34,4,12,"ASHMYCSFY",188.7,"HLA-A*11:01","R1A_SARS2_Replicase_poly_sliding:916-930","FKLASHMYCSFYPPD"]
[2,7,15,"YPLECIKDL",193,"HLA-B*35:01","R1AB_SARS2_Replicase_poly_sliding:5961-5975","FCGPDGYPLECIKDL"]
[17,4,12,"NIFGTVYEK",207.3,"HLA-A*33:03","R1AB_SARS2_Replicase_poly_sliding:6628-6642","WLTNIFGTVYEKLKP"]
[34,3,11,"LASHMYCSF",208.9,"HLA-B*53:01","R1A_SARS2_Replicase_poly_sliding:916-930","FKLASHMYCSFYPPD"]
[27,5,13,"LEQPTSEAV",209.3,"HLA-B*40:01","R1AB_SARS2_Replicase_poly_sliding:1901-1915","DLQPLEQPTSEAVEA"]
[17,1,9,"WLTNIFGTV",211.9,"HLA-A*68:02","R1AB_SARS2_Replicase_poly_sliding:6628-6642","WLTNIFGTVYEKLKP"]
[12,2,10,"AVVKIYCPA",246.2,"HLA-A*68:02","R1AB_SARS2_Replicase_poly_sliding:6626-6640","NAVVKIYCPACHNSE"]
[34,6,14,"HMYCSFYPP",255,"HLA-A*02:01","R1A_SARS2_Replicase_poly_sliding:916-930","FKLASHMYCSFYPPD"]
[27,5,13,"LEQPTSEAV",256.4,"HLA-B*50:01","R1AB_SARS2_Replicase_poly_sliding:1901-1915","DLQPLEQPTSEAVEA"]
[17,5,13,"IFGTVYEKL",262.8,"HLA-A*24:02","R1AB_SARS2_Replicase_poly_sliding:6628-6642","WLTNIFGTVYEKLKP"]
[13,7,15,"CPACHNSEV",263.4,"HLA-B*55:01","R1AB_SARS2_Replicase_poly_sliding:6627-6641","AVVKIYCPACHNSEV"]
[24,4,12,"FLEGETLPT",289.4,"HLA-A*02:01","R1AB_SARS2_Replicase_poly_sliding:613-627","EIIFLEGETLPTEVL"]
[43,4,12,"HEGKTFYVL",289.8,"HLA-B*37:01","SPIKE_SARS2_Spike_glyco_sliding:276-290","HNSHEGKTFYVLPND"]
[43,4,12,"HEGKTFYVL",310.4,"HLA-B*13:01","SPIKE_SARS2_Spike_glyco_sliding:276-290","HNSHEGKTFYVLPND"]
[34,4,12,"ASHMYCSFY",329,"HLA-A*01:01","R1A_SARS2_Replicase_poly_sliding:916-930","FKLASHMYCSFYPPD"]
[6,4,12,"QLDFIDTKR",333.8,"HLA-A*68:01","R1AB_SARS2_Replicase_poly_sliding:6626-6640","LSEQLDFIDTKRGVY"]
[12,2,10,"AVVKIYCPA",334.2,"HLA-A*30:01","R1AB_SARS2_Replicase_poly_sliding:6626-6640","NAVVKIYCPACHNSE"]
[2,7,15,"YPLECIKDL",346.6,"HLA-B*07:02","R1AB_SARS2_Replicase_poly_sliding:5961-5975","FCGPDGYPLECIKDL"]
[43,4,12,"HEGKTFYVL",365.9,"HLA-B*15:03","SPIKE_SARS2_Spike_glyco_sliding:276-290","HNSHEGKTFYVLPND"]
[34,6,14,"HMYCSFYPP",376.2,"HLA-A*30:01","R1A_SARS2_Replicase_poly_sliding:916-930","FKLASHMYCSFYPPD"]
[43,3,11,"SHEGKTFYV",383,"HLA-B*39:01","SPIKE_SARS2_Spike_glyco_sliding:276-290","HNSHEGKTFYVLPND"]
[6,7,15,"FIDTKRGVY",384,"HLA-B*15:02","R1AB_SARS2_Replicase_poly_sliding:6626-6640","LSEQLDFIDTKRGVY"]
[25,7,15,"ETLPTEVLT",386.5,"HLA-A*68:02","R1A_SARS2_Replicase_poly_sliding:614-628","IIFLEGETLPTEVLT"]
[2,7,15,"YPLECIKDL",387.2,"HLA-B*53:01","R1AB_SARS2_Replicase_poly_sliding:5961-5975","FCGPDGYPLECIKDL"]
[43,4,12,"HEGKTFYVL",389.1,"HLA-B*39:01","SPIKE_SARS2_Spike_glyco_sliding:276-290","HNSHEGKTFYVLPND"]
[28,1,9,"NEKCSAYTV",428.9,"HLA-B*18:01","R1A_SARS2_Replicase_poly_sliding:1901-1915","NEKCSAYTVELGTEV"]
[34,3,11,"LASHMYCSF",430.6,"HLA-B*57:01","R1A_SARS2_Replicase_poly_sliding:916-930","FKLASHMYCSFYPPD"]
[24,4,12,"FLEGETLPT",433,"HLA-A*02:06","R1AB_SARS2_Replicase_poly_sliding:613-627","EIIFLEGETLPTEVL"]
[5,7,15,"ECIKDLLAR",449.4,"HLA-A*68:01","R1AB_SARS2_Replicase_poly_sliding:6622-6636","PDGYPLECIKDLLAR"]
[43,1,9,"HNSHEGKTF",452.6,"HLA-B*15:03","SPIKE_SARS2_Spike_glyco_sliding:276-290","HNSHEGKTFYVLPND"]
[17,4,12,"NIFGTVYEK",468.6,"HLA-A*33:01","R1AB_SARS2_Replicase_poly_sliding:6628-6642","WLTNIFGTVYEKLKP"]
[6,7,15,"FIDTKRGVY",477.9,"HLA-A*29:02","R1AB_SARS2_Replicase_poly_sliding:6626-6640","LSEQLDFIDTKRGVY"]
[6,7,15,"FIDTKRGVY",479.8,"HLA-B*15:25","R1AB_SARS2_Replicase_poly_sliding:6626-6640","LSEQLDFIDTKRGVY"]
[17,2,10,"LTNIFGTVY",480,"HLA-B*58:01","R1AB_SARS2_Replicase_poly_sliding:6628-6642","WLTNIFGTVYEKLKP"]

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["﻿"]
[]
["Input summary:"]
["No. of sequences",43]
["Host species","Human"]
["Allele class","Class I"]
["Alleles","A*01:01 A*02:01 A*02:06 A*03:01 A*11:01 A*23:01 A*24:02 A*25:01 A*26:01 A*29:02 A*30:01 A*30:02 A*31:01 A*32:01 A*33:01 A*33:03 A*68:01 A*68:02 A*74:01 B*07:02 B*08:01 B*13:01 B*13:02 B*14:02 B*15:01 B*15:02 B*15:03 B*15:25 B*18:01 B*27:02 B*27:05 B*35:01 B*35:03 B*37:01 B*38:01 B*39:01 B*40:01 B*40:02 B*44:02 B*44:03 B*46:01 B*48:01 B*49:01 B*50:01 B*51:01 B*52:01 B*53:01 B*55:01 B*56:01 B*57:01 B*58:01 B*58:02"]
["Duplicate peptides","Removed"]
["Peptide lengths selected","9mers"]
["Peptide overlap","N/A"]
["Conservancy analysis","No"]
["Prediction method","netmhcpan"]
["Peptide selection criterion","Predicted IC50"]
["Cutoff for peptide selection criterion",500]
["Job name","T-MHC-1"]
["Email","akaushik@stanford.edu"]