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["Table S1 Count of number of reads per gene obtained by featureCounts software. Only reads with overlapping in a sigle gene were considered for RNA-seq analysis. Command: \"featureConts\" \"-t\" \"gene\" \"-g\" \"ID\" \"-a\" \"gff3 file\" -o \"output file name\" "]
[]
["Sample","V2*","V3*","M1**","M2**","M3**"]
["Assigned ",10372208,8603394,7299222,9590968,6046843]
["Unassigned_Unmapped ",285340,1227967,1477886,1389343,2075951]
["Unassigned_MappingQuality ",0,0,0,0,0]
["Unassigned_Chimera ",0,0,0,0,0]
["Unassigned_FragmentLength ",0,0,0,0,0]
["Unassigned_Duplicate ",0,0,0,0,0]
["Unassigned_MultiMapping",0,0,0,0,0]
["Unassigned_Secondary",0,0,0,0,0]
["Unassigned_Nonjunction",0,0,0,0,0]
["Unassigned_NoFeatures ",2532653,1757679,2635901,1434970,1922922]
["Unassigned_Overlapping_Length",0,0,0,0,0]
["Unassigned_Ambiguity ",254622,216753,178054,220287,157362]
["*V: 10 DAP fruit"]
["*M: 40 DAP fruit"]
[]
["Table S2  RNA-seq data analysis (diferential expression and statistical test).  lfcSE: standard error value; stat: Wald statistic; padj: p value adjustated"]
["Gene (Melonomics ID)","Number of reads mapping in a single gene of the reference genome (Counts by featureCounts software)",{"$nulls":4},"Normalized counts reads (DESeq2 software)",{"$nulls":4},"baseMean (DESeq2 software)","log2FoldChange (DESeq2 software)","lfcSE (DESeq2 software)","stat (DESeq2 software)","pvalue (DESeq2 software)","padj (DESeq2 software)"]
[null,"V2 sample*","V3 sample*","M1 sample**","M2 sample**","M3 sample**","V2 sample*","V3 sample*","M1 sample**","M2 sample**","M3 sample**",{"$nulls":3}," Wald statistic"]
["MELO3C027429.2",0,0,0,0,0,0,0,0,0,0,0,"NA","NA","NA","NA","NA"]
["MELO3C001407.2",1,0,0,0,6,0.774028650445278,0,0,0,8.97210258843583,1.94922624777622,-2.87255786632508,3.69152384669381,-0.778149616694958,0.436480815142551,"NA"]
["MELO3C027430.2",0,0,0,0,0,0,0,0,0,0,0,"NA","NA","NA","NA","NA"]
["MELO3C027439.2",0,0,0,0,0,0,0,0,0,0,0,"NA","NA","NA","NA","NA"]
["MELO3C027428.2",0,0,0,0,0,0,0,0,0,0,0,"NA","NA","NA","NA","NA"]
["MELO3C027004.2",55,78,89,128,52,42.5715757744903,66.7634378140977,94.2717634436561,114.127911864579,77.7582224331105,79.0985822659868,-0.808610084190432,0.504969010998085,-1.60130635064554,0.109309083130012,0.345922609998511]
["MELO3C027431.2",0,0,0,0,0,0,0,0,0,0,0,"NA","NA","NA","NA","NA"]
["MELO3C027432.2",0,0,0,0,0,0,0,0,0,0,0,"NA","NA","NA","NA","NA"]
["MELO3C027445.2",0,0,0,0,0,0,0,0,0,0,0,"NA","NA","NA","NA","NA"]
["MELO3C027433.2",0,0,0,0,0,0,0,0,0,0,0,"NA","NA","NA","NA","NA"]
["MELO3C027442.2",413,449,373,403,194,319.6738326339,384.31773818628,395.09401982566,359.324597511136,290.097983692759,349.701634369947,0.0134669338124648,0.302414641884884,0.0445313551239728,0.964480858985051,0.988249219971725]
["MELO3C027434.2",0,1,0,1,0,0,0.85594151043715,0,0.891624311442025,0,0.349513164375835,0.0702439811414662,4.55255790115317,0.0154295634820313,0.987689477983626,"NA"]
["MELO3C027436.2",0,0,0,0,0,0,0,0,0,0,0,"NA","NA","NA","NA","NA"]
["MELO3C027437.2",0,2,0,0,0,0,1.7118830208743,0,0,0,0.34237660417486,2.04587347430468,4.44144734732461,0.460632157563918,0.645062536073934,"NA"]
["MELO3C027438.2",0,0,0,0,0,0,0,0,0,0,0,"NA","NA","NA","NA","NA"]
["MELO3C001335.2",3,8,16,28,1,2.32208595133583,6.8475320834972,16.9477327539157,24.9654807203767,1.49535043140597,10.5156363881063,-1.67860230658802,1.41647779967425,-1.18505373467488,0.235996201881107,0.532453160811617]
["MELO3C001504.2",0,0,0,0,0,0,0,0,0,0,0,"NA","NA","NA","NA","NA"]
["MELO3C000965.2",0,0,0,0,0,0,0,0,0,0,0,"NA","NA","NA","NA","NA"]
["MELO3C027031.2",0,0,0,0,0,0,0,0,0,0,0,"NA","NA","NA","NA","NA"]
["MELO3C027032.2",23,41,109,114,194,17.8026589602414,35.0936019279232,115.456429386051,101.645171504391,290.097983692759,112.019169094273,-2.67402055781699,0.587959920871313,-4.54796400723077,{"v":5.41673964738358e-06,"d":"5.42E-06"},1.99318900659142E-4]
["MELO3C027460.2",2,5,29,33,4,1.54805730089056,4.27970755218575,30.7177656164722,29.4236022775868,5.98140172562389,14.3901068945518,-2.93964850428674,1.23978558996482,-2.37109426668699,0.0177355070521228,0.110473574147161]
["MELO3C027019.2",0,0,0,0,0,0,0,0,0,0,0,"NA","NA","NA","NA","NA"]
["MELO3C027440.2",0,0,0,0,0,0,0,0,0,0,0,"NA","NA","NA","NA","NA"]
["MELO3C027030.2",0,0,0,0,0,0,0,0,0,0,0,"NA","NA","NA","NA","NA"]
["MELO3C027435.2",0,0,0,0,0,0,0,0,0,0,0,"NA","NA","NA","NA","NA"]
["MELO3C027026.2",0,0,0,0,0,0,0,0,0,0,0,"NA","NA","NA","NA","NA"]
["MELO3C027443.2",0,0,0,0,0,0,0,0,0,0,0,"NA","NA","NA","NA","NA"]
["MELO3C027441.2",126,189,84,95,70,97.5276099561051,161.772945472621,88.9755969580574,84.7043095869924,104.674530198418,107.530998434439,0.48469070177274,0.449163727001354,1.07909582327266,0.280545012999633,0.584429936984921]
["MELO3C027446.2",0,0,0,0,0,0,0,0,0,0,0,"NA","NA","NA","NA","NA"]
["MELO3C027033.2",0,0,0,0,0,0,0,0,0,0,0,"NA","NA","NA","NA","NA"]
["MELO3C023154.2",0,0,0,0,0,0,0,0,0,0,0,"NA","NA","NA","NA","NA"]
["MELO3C027040.2",1921,1266,4590,4964,3327,1486.90903750538,1083.62195221343,4861.88083377957,4426.02308199821,4975.03088528767,3366.69315815685,-1.8868337625096,0.231914752787302,-8.13589364122982,{"v":4.08910692802686e-16,"d":"4.09E-16"},{"v":1.21193694606847e-13,"d":"1.21E-13"}]
["MELO3C027444.2",0,0,0,0,0,0,0,0,0,0,0,"NA","NA","NA","NA","NA"]
["MELO3C027483.2",7,5,1,0,1,5.41820055311695,4.27970755218575,1.05923329711973,0,1.49535043140597,2.45049836676568,2.5767675370352,2.53227462514385,1.01757033437431,0.308882191347284,"NA"]
["MELO3C027484.2",7,7,7,13,4,5.41820055311695,5.99159057306005,7.41463307983812,11.5911160487463,5.98140172562389,7.27938839607707,-0.55620761218371,1.38076087329489,-0.402826892723605,0.687075575932859,0.876233685126078]
["MELO3C027447.2",0,0,0,0,0,0,0,0,0,0,0,"NA","NA","NA","NA","NA"]
["MELO3C027075.2",15,10,4,12,52,11.6104297566792,8.5594151043715,4.23693318847892,10.6994917373043,77.7582224331105,22.5728984439889,-1.59851220758407,1.1751731409333,-1.36023548522779,0.173755416624736,0.450527238295858]
["MELO3C027448.2",2213,2006,4974,3134,4189,1712.9254034354,1717.01866993692,5268.62641987354,2794.35059205931,6264.02295715962,3551.38880849296,-1.47715886332389,0.31688344077432,-4.66152115653119,{"v":3.13880794927087E-6,"d":"3.14E-06"},1.2696205553614E-4]
["MELO3C027053.2",32,58,62,103,269,24.7689168142489,49.6446076053547,65.6724644214233,91.8373040785286,402.249266048206,126.834511793552,-2.32247576348056,0.700428251074295,-3.31579395879367,0.000913831765038741,0.0134808792777344]
["MELO3C027054.2",62,51,120,114,102,47.9897763276072,43.6530170322947,127.107995654368,101.645171504391,152.525744003409,94.5843409044139,-1.46743850419138,0.462148622061963,-3.17525236285274,0.00149706241107271,0.0196170533463796]
["MELO3C027055.2",122,70,142,92,132,94.4314953543239,59.9159057306005,150.411128191002,82.0294366526663,197.386256945588,116.834844574836,-0.885916465949309,0.502128047907581,-1.76432380075364,0.0776774790453689,0.280447527335229]
["MELO3C027052.2",0,0,6,2,5,0,0,6.35539978271839,1.78324862288405,7.47675215702986,3.12308011252646,-5.11053158655558,2.68665802520128,-1.90218909091443,0.057146438499076,"NA"]
["MELO3C027454.2",0,0,0,0,0,0,0,0,0,0,0,"NA","NA","NA","NA","NA"]
["MELO3C027066.2",2,3,0,0,0,1.54805730089056,2.56782453131145,0,0,0,0.823176366440401,3.31712556663354,4.37535677618398,0.758138304215412,0.44836819085661,"NA"]
["MELO3C000321.2",54,76,51,93,37,41.797547124045,65.0515547932234,54.0208981531063,82.9210609641083,55.327965962021,59.8238053993008,-0.268287374678265,0.565584012029659,-0.474354594493375,0.63524706606829,0.848342280985949]
["MELO3C027449.2",0,0,0,0,0,0,0,0,0,0,0,"NA","NA","NA","NA","NA"]
["MELO3C027450.2",0,0,0,0,0,0,0,0,0,0,0,"NA","NA","NA","NA","NA"]
["MELO3C027451.2",0,0,0,0,0,0,0,0,0,0,0,"NA","NA","NA","NA","NA"]
["MELO3C027453.2",0,0,0,0,0,0,0,0,0,0,0,"NA","NA","NA","NA","NA"]
["MELO3C027452.2",0,0,0,0,0,0,0,0,0,0,0,"NA","NA","NA","NA","NA"]
["MELO3C027455.2",0,2,6,0,6,0,1.7118830208743,6.35539978271839,0,8.97210258843583,3.4078770784057,-2.58054197539534,2.60939397850806,-0.988943025334482,0.322691018139977,0.627033768828199]
["MELO3C027456.2",0,0,0,0,0,0,0,0,0,0,0,"NA","NA","NA","NA","NA"]
["MELO3C027516.2",0,0,0,0,0,0,0,0,0,0,0,"NA","NA","NA","NA","NA"]
["MELO3C027101.2",3,2,4,1,0,2.32208595133583,1.7118830208743,4.23693318847892,0.891624311442025,0,1.83250529442622,0.219691038529361,2.80320913057086,0.0783712624696759,0.937532732430215,"NA"]
["MELO3C027102.2",4,3,7,15,3,3.09611460178111,2.56782453131145,7.41463307983812,13.3743646716304,4.48605129421792,6.18779763575579,-1.58464214903193,1.54810504362345,-1.02360117975132,0.30602368777126,0.610063854024619]
["MELO3C027060.2",153,114,123,110,32,118.426383518128,97.5773321898351,130.285695545727,98.0786742586228,47.8512138049911,98.4438598634607,0.223516931781565,0.521352669201467,0.428725016645482,0.668123352794567,0.866261975772267]
["MELO3C027111.2",0,0,0,0,0,0,0,0,0,0,0,"NA","NA","NA","NA","NA"]
["MELO3C027057.2",1326,958,287,349,614,1026.36199049044,819.99196699879,303.999956273363,311.176884693267,918.145164883267,675.935192667825,0.856522661586335,0.438786536879939,1.95202584764057,0.050935135922516,0.216704771063586]
["MELO3C027530.2",0,0,0,0,0,0,0,0,0,0,0,"NA","NA","NA","NA","NA"]
["MELO3C027457.2",0,0,0,0,0,0,0,0,0,0,0,"NA","NA","NA","NA","NA"]
["MELO3C027458.2",0,0,0,0,0,0,0,0,0,0,0,"NA","NA","NA","NA","NA"]
["MELO3C027041.2",0,0,0,0,0,0,0,0,0,0,0,"NA","NA","NA","NA","NA"]
["MELO3C027042.2",0,0,0,0,0,0,0,0,0,0,0,"NA","NA","NA","NA","NA"]
["MELO3C027044.2",0,0,0,0,0,0,0,0,0,0,0,"NA","NA","NA","NA","NA"]
["MELO3C027046.2",17,39,18,6,3,13.1584870575697,33.3817189070489,19.0661993481552,5.34974586865215,4.48605129421792,15.0884404951288,1.26144130728945,1.13006546594375,1.11625507132543,0.264312967311073,0.56559350010021]
["MELO3C027047.2",143,108,267,241,425,110.686097013675,92.4416831272122,282.815290330968,214.881459057528,635.523933347538,267.269692575384,-1.8906432937367,0.46099668719458,-4.10120798316863,{"v":4.10998938738861e-05,"d":"4.11E-05"},1.0858498704023E-3]
["MELO3C027091.2",0,0,0,0,0,0,0,0,0,0,0,"NA","NA","NA","NA","NA"]
["MELO3C027051.2",14,17,1,0,0,10.8364011062339,14.5510056774316,1.05923329711973,0,0,5.28932801615704,4.98053559478557,2.12182512111095,2.34728844768218,0.0189106086044067,0.115046038044421]
["MELO3C027056.2",0,0,0,0,0,0,0,0,0,0,0,"NA","NA","NA","NA","NA"]
["MELO3C027088.2",9,3,11,9,54,6.9662578540075,2.56782453131145,11.651566268317,8.02461880297823,80.7489232959225,21.9918381505073,-2.7907172609806,1.18945717203127,-2.34621079817008,0.0189653778891692,0.115184286501992]
["MELO3C027089.2",70,42,209,343,235,54.1820055311695,35.9495434383603,221.379759098024,305.827138824615,351.407351380403,193.749159654514,-2.69593489487611,0.400929795552914,-6.72420689302527,{"v":1.76551425178812E-11,"d":"1.77E-11"},{"v":2.5245305103858e-09,"d":"2.52E-09"}]
["MELO3C027090.2",32,37,117,107,73,24.7689168142489,31.6698358861746,123.930295763009,95.4038013242967,109.160581492636,76.9866862560729,-1.9571493518287,0.501722448452855,-3.90086064090594,{"v":9.58513192502183e-05,"d":"9.59E-05"},0.0022100033311143]
["MELO3C027459.2",3,13,11,9,13,2.32208595133583,11.127239635683,11.651566268317,8.02461880297823,19.4395556082776,10.5130132533183,-0.950118537184217,1.27462690518309,-0.745409133700765,0.456024423953055,0.737465687982019]
["MELO3C027061.2",8244,4325,3553,5020,2286,6381.09219427087,3701.94703264067,3763.4559046664,4475.95404343897,3418.37108619405,4348.16405224219,0.375452487597025,0.276331097867216,1.35870515658516,0.174240037431701,0.45105397017217]
["MELO3C027552.2",0,0,0,0,0,0,0,0,0,0,0,"NA","NA","NA","NA","NA"]
["MELO3C027064.2",209,230,117,82,118,161.771987943063,196.866547400545,123.930295763009,73.1131935382461,176.451350905905,146.426675110153,0.534062804396086,0.455770726947759,1.17177952163062,0.241285586502315,0.539163309879951]
["MELO3C027069.2",1286,1069,771,1314,611,995.400844472628,915.001474657314,816.668872079313,1171.59434523482,913.659113589049,962.464930006625,-0.0188619621224035,0.259663255206216,-0.0726400895938239,0.942092524086906,0.979820741828664]
["MELO3C027465.2",0,0,1,0,0,0,0,1.05923329711973,0,0,0.211846659423946,-1.42476044104469,4.56209215174643,-0.312304178358008,0.754809364881895,"NA"]
["MELO3C016026.2",1,0,0,0,0,0.774028650445278,0,0,0,0,0.154805730089056,0.958732133977782,4.55807090228949,0.210337257697377,0.833404458207095,"NA"]
["MELO3C027071.2",0,0,0,0,0,0,0,0,0,0,0,"NA","NA","NA","NA","NA"]
["MELO3C027072.2",0,0,0,0,0,0,0,0,0,0,0,"NA","NA","NA","NA","NA"]
["MELO3C027560.2",0,0,0,0,0,0,0,0,0,0,0,"NA","NA","NA","NA","NA"]
["MELO3C027074.2",0,0,0,0,0,0,0,0,0,0,0,"NA","NA","NA","NA","NA"]
["MELO3C027463.2",0,0,0,0,0,0,0,0,0,0,0,"NA","NA","NA","NA","NA"]
["MELO3C027464.2",0,0,0,0,0,0,0,0,0,0,0,"NA","NA","NA","NA","NA"]
["MELO3C027127.2",118,124,119,232,233,91.3353807525428,106.136747294207,126.048762357248,206.85684025455,348.416650517591,175.758876235228,-1.19781863754609,0.464913839593532,-2.57643144930537,0.00998259975284001,0.0751970233692444]
["MELO3C027566.2",1,9,14,17,61,0.774028650445278,7.70347359393435,14.8292661596762,15.1576132945144,91.2163763157643,25.9361516028669,-3.25484453351783,1.16752528862368,-2.78781501799825,0.00530648344262299,0.0485415188542073]
["MELO3C027076.2",499,447,69,97,74,386.240296572194,382.605855165406,73.0870975012614,86.4875582098764,110.655931924042,207.815347874556,2.10051240762463,0.354225457165109,5.92987422314358,{"v":3.03166815987475e-09,"d":"3.03E-09"},{"v":3.01336723622673e-07,"d":"3.01E-07"}]
["MELO3C027461.2",1419,1423,1651,2603,1661,1098.34665498185,1218.00476935206,1748.79417354468,2320.89808268359,2483.77706656532,1773.9641494255,-0.915207565083201,0.246373840496792,-3.71471079574749,0.000203436225051199,0.0040921512915239]
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["*V: 10 DAP fruit; **M: 40 DAP fruit"]

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