Methods | True positive (TP) | True Negative (TN) | False Positive (FP) | False Negative (FN) | Sensitivity % (95% CI) | Specificity % (95% CI) | PPV % (95% CI) | NPV % (95% CI) | Accuracy % (95% CI) | Kappa value K (95% CI) |
|---|---|---|---|---|---|---|---|---|---|---|
OncoE6 | 63 | 193 | 4 | 43 | 59.43 (49.46–68.87) | 97.97 (94.88–99.44) | 94.03 (85.51–97.68) | 81.77 (78.07–84.97) | 84.48 (79.91–88.37) | 0.63 (0.53–0.72) |
VIA | 68 | 19 | 53 | 3 | 95.77 (88.14–99.12) | 26.39 (16.70–38.10) | 41.20 (37.69–44.79) | 92.06 (78.21–97.40) | 50.67 (42.19–59.13) | 0.22 (0.11–0.33) |
Either OncoE6 OR VIA positive | 89 | 142 | 55 | 17 | 83.96%75.57% to 90.37% | 72.08%65.26% to 78.22% | 61.82%56.04% to 67.29% | 89.30%84.26% to 92.86% | 76.24%71.04% to 80.92% | 0.50 (0.41–0.60) |
Variables | Biopsy result | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Normal N (%) | CIN-1 | CIN-2&3 | ICC/CIS | ||||||||||
N (%) | COR (95% CI) | AOR (95% CI) | P-value | N (%) | COR (95% CI) | AOR (95% CI) | P-value | N (%) | COR (95% CI) | AOR (95% CI) | P-value | ||
age | |||||||||||||
25- 39yrs | 24(35.29) | 28 (41.18) | 1 | 1 | 9(13.24) | 1 | 1 | 7 (10.29) | 1 | 1 | |||
40-54yrs | 13(10.66) | 61(50) | 4.02 (1.79–9.04) | 8.4 (2.43–29.3) | 0.001* | 20 (16.39) | 4.1(1.46–11.57) | 1.76 (0.51–6.08), | 0.369 | 28 (22.95) | 7.4 (2.5–21.5) | 6.89 (1.39–34.16) | 0.018* |
55+ | 1(0.98) | 65 (63.73) | 54.9 (7.1-425.7) | 63.2 (6.38–625.9) | < 0.001* | 24 (23.53) | 64.0 (7.5–545.08) | 23.7 (2.3- 238.8) | 0.007* | 12 (11.76) | 44.6 (4.9–402.0) | 39.4 (2.86–543.11 | 0.003* |
Marital status | |||||||||||||
Unmarried | 5 (38.46) | 3 (23.08) | 1 | 1 | 5(38.46) | 1 | 1 | 0 (0) | 1 | ||||
Married | 23 (12.1) | 105 (55.3) | 7.6 (1.70-34.13) | 11.7 (1.4–96.89) | 0.023* | 35 (18.42) | 1.52 (0.40–5.85 | 2.18 (0.39–12.16) | 0.372 | 27 (14.21) | - | - | < 0.001* |
Divorced | 7 (12.73) | 27 (49.09) | 6.43 (1.23–33.65 | 10.21 (0.9 -104.2) | 0.050 | 8 (14.55) | 1.14 (0.23–5.67 | 2.08 (0.27–16.18) | 0.484 | 13 (23.6) | - | - | - |
Widowed | 4 (8.89) | 24 (53.33) | 9.58 (1.61–56.95) | 10.3 (0.9–118.8) | 0.063 | 7(15.56) | 1.75(0.31–10.02 | 1.34 (0.15–12.22) | 0.795 | 10 (22.2) | - | - | < 0.001* |
Educational Status | |||||||||||||
No education | 12 (9.68) | 35 (28.23) | 0.33 (0.11–1.02) | 0.22 (0.05–1.01) | 0.056 | 40(32.26) | 5.0 (1.21–20.69) | 6.04 (0.96–37.97) | 0.055 | 37 (29.84) | 9.5 (1.69–53.42) | 3.43 (0.44–26.96), | 0.241 |
Primary | 6 (12) | 30 (60) | 0.58 (0.17–1.95) | 0.38 (0.08–1.8) | 0.224 | 6(12) | 1.5(0.28–8.19) | 0.86 (0.11–6.83) | 0.882 | 8 (16) | 4.0 (0.59–27.25) | 0.59 (0.06–6.21) | 0.666 |
Secondary | 11(18.64) | 40 (67.8) | 0.42 (0.14–1.23) | 0.56 (0.14–2.22) | 0.412 | 5(8.47) | 0.68(0.13–3.55) | 1.15 (0.17–7.82) | 0.890 | 3 (5.08) | 0.85 (0.11–6.34) | 0.46 (0.04–4.99) | 0.520 |
Tertiary | 6 (9.38) | 52 (81.25) | 1 | 1 | 4(6.25) | 1 | 1 | 2 (3.13) | 1 | 1 | |||
Age of first sex | |||||||||||||
< 15yrs | 1(3.85) | 12(46.15) | 2.1 (0.21–21.10) | 6.43 (0.35–119.57) | 0.212 | 9(34.62) | 12.0 (0.94–153.89) | 9.16 (0.35–238.55) | 0.183 | 4 (15.38) | - | - | - |
15-19yrs | 27(19.42) | 59(42.45) | 0.4 (0.13–1.33) | 1.11 (0.23–5.37) | 0.899 | 30(21.58) | 1.48 (0.30–7.23) | 1.54 (0.18–13.53) | 0.696 | 23 (16.55) | - | - | - |
20-24yrs | 6(8.7) | 49(71.01) | 1.6 (0.41–6.21) | 2.15 (0.380–12.111) | 0.387 | 9(13.04) | 2.00 (0.32–12.33) | 2.42 (0.24–24.31) | 0.452 | 5 (7.25) | - | - | - |
25+ | 4(13.79) | 22(75.86) | 1 | 1 | 3(10.34) | 1 | 1 | 0 (0) | 1 | ||||
History of STI | |||||||||||||
Yes | 10(12.66) | 55(69.62) | 1.6 (0.72–3.48) | 1.59 (0.56–4.45) | 0.382 | 6(7.59) | 0.36 (0.12–1.08) | - | - | 8 (10.13) | 0.54 (0.19–1.53) | 0.40 (0.08–1.99) | 0.265 |
No | 29(13.06) | 102(45.95) | 1 | 1 | 49(22.07) | 1 | 1 | 42 (18.92) | 1 | 1 | |||
| AOR, adjusted odds ratios; COR, crude odds ratios; CI, confidence interval. (*) Statistically significant at p ≤ 0.05. | |||||||||||||
| CIN: Cervical Intraepithelial Neoplasia; CIS: Carcinoma In Situ; ICC: Invasive Cervical Cancer; VIA: Visual Inspection with Acetic Acid; | |||||||||||||
Variables | VIA | OncoE6 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|
Negative N (%) | Positive N (%) | COR (95% CI) | AOR (95% CI) | P-value | Negative N (%) | Positive N (%) | COR (95% CI) | AOR (95% CI) | P-value | |
age | ||||||||||
25- 39yrs | 11(16.67) | 45 (68.18) | 1 | 1 | 57(83.82) | 11(16.18) | 1 | 1 | ||
40-54yrs | 10(8.26) | 51 (42.15) | 0.99(.40-2.49) | - | 0.724 | 90 (73.77) | 32 (26.2) | 1.84(0.86–3.94) | 1.67 (0.62, 4.48) | 0.313 |
55+ | 0 (0) | 17 (16.67) | - | - | - | 80(78.4) | 22 (21.6) | 1.43(0.64–3.17) | 1.10 (0.38, 3.20) | 0.866 |
Marital status | ||||||||||
Unmarried | 1(7.69 | 7 (53.85) | 1 | 1 | 7(53.85) | 6(46.15) | 1 | 1 | ||
Married | 14 (7.45) | 68 (36.17) | 0.59 (0.07–5.14) | 0.71 (0.05–9.65) | 0.800 | 152(80) | 38(20) | 3.43 (1.09–10.80) | 0.32 (0.07–1.51) | 0.151 |
Divorced | 4 (7.41) | 27(50) | 0.96 (0.09–10.05) | 1.31 (0.29–5.7) | 0. 337 | 45(81.82) | 10(18.2) | 3.86 (1.06–13.98) | 0.51 (0.09, 2.84) | 0.439 |
Widowed | 3 (6.67) | 19(42.22) | 0.91 (0.08–10.21) | 1.01 (0.04–23.97) | 0 .995 | 32(71.11) | 13(28.9) | 2.11(0.59–7.49) | 0.56 (0.10, 3.10) | 0.504 |
Educational Status | ||||||||||
No education | 6(4.88) | 77(62.6) | 12.83 (3.15–52.24) | 34.27 (1.47–799.5) | 0.028* | 70(56.45) | 54(43.6) | 15.69 (4.67–52.72) | 16.76 (3.58–78.41) | < 0.0001* |
Primary | 4(8) | 15(30) | 2.80(0.61–12.86) | 10.62 (0.44-257.92) | 0.147 | 45 (90) | 5(10) | 2.26 (0.51–9.95) | 1.62 (0.25–10.65) | 0.617 |
Secondary | 5(8.62) | 18(31.03) | 3.60(0.80–16.20) | 4.44 (0.21–93.53) | 0.337 | 54(91.53) | 5(8.47) | 1.88 (0.43–8.25) | 2.12 (0.38–11.89) | 0.394 |
Tertiary | 5(7.94) | 7(11.11) | 1 | 1 | 61(95.31) | 3(4.69) | 1 | 1 | ||
Age of first sex | ||||||||||
< 15yrs | 0(0) | 12(48) | - | - | - | 15(57.69) | 11(42.31) | 19.8 (2.32-168.66) | 4.01 (0.37–43.66) | 0.255 |
15-19yrs | 17(12.2) | 60(43.17) | 1.02 (0.10-10.37) | - | < 0.001* | 101 (72.66) | 38(27.3) | 10.16 (1.33–77.38) | 3.05 (0.32–28.82) | 0.331 |
20-24yrs | 4(5.88) | 12(17.65) | 1.00 (0.08–12.56) | - | - | 63 (91.3) | 6(8.7) | 2.53 (0.29, 22.04) | 1.46 (0.14–15.23) | 0.744 |
25+ | 1(3.45) | 3(10.34) | 1 | 1 | - | 28(96.55) | 1(3.45) | 1 | 1 | |
History of STI | ||||||||||
Yes | 1(1.3) | 40(51.95) | 11.65 (1.52–89.38) | 15.38 (0.96–247.1) | 0.054 | 73(92.41) | 6(7.59) | - | - | - |
No | 21(9.5) | 81(36.65) | 1 | 1 | 161 (72.52) | 61(27.5) | 1 | |||
| *indicates level of significance < 0.05 | ||||||||||
| STI: Sexually Transmitted Infection AOR, adjusted odds ratios; COR, crude odds ratios; CI, confidence interval. (*) Statistically significant at p ≤ 0.05 | ||||||||||