References
Afiqah, R. N., Paital, B., Kumar, S., Majeed, A. B. A., & Tripathy, M. (2016). AgNO3 dependant modulation of glucose mediated respiration kinetics in Escherichia coli at different pH and temperature. Journal Of Molecular Recognition, 29, 544–554. https://doi.org/10.1002/jmr.2554
Almeida, A., Catone, M. V., Rhodius, V. A., Gross, C. A., & Pettinari, M. J. (2011). Unexpected stress-Reducing effect of PhaP, a poly(3-hydroxybutyrate) granule-associated protein, in Escherichia coli. Applied And Environment Microbiology, 77, 6622–6629. https://doi.org/10.1128/AEM.05469-11
Ameen, F., AlYahya, S., Govarthanan, M., ALjahdali, N., Al-Enazi, N., Alsamhary, K., Alshehri, W. A., Alwakeel, S. S., & Alharbi, S. A. (2020). Soil bacteria Cupriavidus sp. mediates the extracellular synthesis of antibacterial silver nanoparticles. Journal Of Molecular Structure, 1202, 127233. https://doi.org/10.1016/j.molstruc.2019.127233
Ayhan, F. Y., Karaarslan, U., Gülderen, M., Özbek, Ö. A., Akaslan Kara, A., Güner Özenen, G., & Ağın, H. (2024). A New Potential Threat for Nosocomial Infections: Cupriavidus metallidurans as a Cause of Bacteremia in Children. J Dr Behcet Uz Child s Hosp, 14, 65–68. https://doi.org/10.4274/jbuch.galenos.2024.35492
Bao, S., Wang, H., Zhang, W., Xie, Z., & Fang, T. (2016). An investigation into the effects of silver nanoparticles on natural microbial communities in two freshwater sediments. Environmental Pollution, 219, 696–704. https://doi.org/10.1016/j.envpol.2016.06.071
Bhattacharya, A. (2011). Siderophore mediated metal uptake by Pseudomonas fluorescens and its comparison to Iron (III) chelation. Ceylon J Sci (Biological Sci, 39, 147–155. https://doi.org/10.4038/cjsbs.v39i2.3001
Bisht, K. (2023). Temperature-specific adaptations and genetic requirements in a biofilm formed by Pseudomonas aeruginosa. Frontiers In Microbiology, 13, 1–13. https://doi.org/10.3389/fmicb.2022.1032520
Bondarenko, O. M., Sihtmäe, M., Kuzmičiova, J., Ragelienė, L., Kahru, A., Daugelavičius, R., Bondarenko, O. M., Sihtmäe, M., Kuzmičiova, J., & Ragelienė, L. (2018). Plasma membrane is the target of rapid antibacterial action of silver nanoparticles in Escherichia coli and Pseudomonas aeruginosa Plasma membrane is the target of rapid antibacterial action of silver nanoparticles in Escherichia coli and Pseudomonas aeru. https://doi.org/10.2147/IJN.S177163
Bren, A., & Eisenbach, M. (2000). How signals are heard during bacterial chemotaxis: Protein-protein interactions in sensory signal propagation. Journal Of Bacteriology, 182, 6865–6873. https://doi.org/10.1128/JB.182.24.6865-6873.2000
Burkowska-But, A., Sionkowski, G., & Walczak, M. (2014). Influence of stabilizers on the antimicrobial properties of silver nanoparticles introduced into natural water. J Environ Sci (China), 26, 542–549. https://doi.org/10.1016/S1001-0742(13)60451-9
Cámara, M., Green, W., Macphee, C. E., Rakowska, P. D., Slater-jefferies, J., Steventon, K., & Webb, J. S. (2022). Economic significance of bio films: a multidisciplinary and cross-sectoral challenge 1–8. https://doi.org/10.1038/s41522-022-00306-y
Romano, C. L., & Romano, D. (2017). A Modern approach to biofilm related orthopaedic implant infection. Advances in Experimental Medicine and Biology.
A
Chaturvedi, K. S., Hung, C. S., Crowley Jan, R., Stapleton, A. E., & Henderson, J. P. (2013).
Pathogens During Infection Nat Chem Biol 8, 731–736.
https://doi.org/10.1038/nchembio.1020.The.
Chen, R., Choudhary, P., Schurr, R. N., Bhattacharya, P., Brown, J. M., & Chun Ke, P. (2012). Interaction of lipid vesicle with silver nanoparticle-serum albumin protein corona. Applied Physics Letters, 100, 3–6. https://doi.org/10.1063/1.3672035
Cheng, H. J., Wang, H., & Zhang, J. Z. (2020). Phytofabrication of Silver Nanoparticles Using Three Flower Extracts and Their Antibacterial Activities Against Pathogen Ralstonia solanacearum Strain YY06 of Bacterial Wilt. Frontiers In Microbiology, 11. https://doi.org/10.3389/fmicb.2020.02110
D’Inzeo, T., Santangelo, R., Fiori, B., De Angelis, G., Conte, V., Giaquinto, A., Palucci, I., Scoppettuolo, G., Di Florio, V., Giani, T., Sanguinetti, M., Rossolini, G. M., & Spanu, T. (2015). Catheter-related bacteremia by Cupriavidus metallidurans. Diagnostic Microbiology And Infectious Disease, 81, 9–12. https://doi.org/10.1016/j.diagmicrobio.2014.09.015
de Carvalho, C. C. C. R. (2018). Marine biofilms: A successful microbial strategy with economic implications. Front Mar Sci, 5, 1–11. https://doi.org/10.3389/fmars.2018.00126
de Duve, C. (1959). The function of intracellular hydrolases. Experimental Cell Research, 7, 169–182. https://doi.org/10.1016/0014-4827(59)90241-1
Deutsch, E. W., Bandeira, N., Perez-Riverol, Y., Sharma, V., Carver, J. J., Mendoza, L., Kundu, D. J., Wang, S., Bandla, C., Kamatchinathan, S., Hewapathirana, S., Pullman, B. S., Wertz, J., Sun, Z., Kawano, S., Okuda, S., Watanabe, Y., Maclean, B., Maccoss, M. J., Zhu, Y., Ishihama, Y., & Vizcaíno, J. A. (2023). The ProteomeXchange consortium at 10 years: 2023 update. Nucleic Acids Research, 51, D1539–D1548. https://doi.org/10.1093/nar/gkac1040
Donelli, G. (2015). Biofilm-based Healthcare-associated Infections. Advances in Experimental Medicine and Biology.
Ellena, G., Fahrion, J., Gupta, S., Dussap, C. G., Mazzoli, A., Leys, N., & Mastroleo, F. (2024). Development and implementation of a simulated microgravity setup for edible cyanobacteria. npj Microgravity, 10, 1–14. https://doi.org/10.1038/s41526-024-00436-x
Flemming, H. C., & Wingender, J. (2010). The biofilm matrix. Nature Reviews Microbiology, 8, 623–633. https://doi.org/10.1038/nrmicro2415
Garcés, M., Magnani, N. D., Pecorelli, A., Calabró, V., Marchini, T., Cáceres, L., Pambianchi, E., Galdoporpora, J., Vico, T., Salgueiro, J., Zubillaga, M., Moretton, M. A., Desimone, M. F., Alvarez, S., Valacchi, G., & Evelson, P. (2021). Alterations in oxygen metabolism are associated to lung toxicity triggered by silver nanoparticles exposure. Free Radical Biology And Medicine, 166, 324–336. https://doi.org/10.1016/j.freeradbiomed.2021.02.008
Greene, B. L., Wu, C. H., McTernan, P. M., Adams, M. W. W., & Dyer, R. B. (2015). Proton-Coupled Electron Transfer Dynamics in the Catalytic Mechanism of a [NiFe]-Hydrogenase. Journal Of The American Chemical Society, 137, 4558–4566. https://doi.org/10.1021/jacs.5b01791
Grewe, C. B., & Pulz, O. (2012). The Biotechnology of Cyanobacteria II: Their Diverisity in Space and Time. Ecology of Cyanobacteria.
Guo, Y., Yang, M., Xie, R. C., & Compton, R. G. (2021). The oxygen reduction reaction at silver electrodes in high chloride media and the implications for silver nanoparticle toxicity. Chemical Science, 12, 397–406. https://doi.org/10.1039/d0sc04295a
Holt, K. B., & Bard, A. J. (2005). Interaction of silver(I) ions with the respiratory chain of Escherichia coli: An electrochemical and scanning electrochemical microscopy study of the antimicrobial mechanism of micromolar Ag. Biochemistry, 44, 13214–13223. https://doi.org/10.1021/bi0508542
Inbakandan, D., Kumar, C., Abraham, L. S., Kirubagaran, R., Venkatesan, R., & Khan, S. A. (2013). Silver nanoparticles with anti microfouling effect: A study against marine biofilm forming bacteria. Colloids Surfaces B Biointerfaces, 111, 636–643. https://doi.org/10.1016/j.colsurfb.2013.06.048
Jakubovics, N. S., Goodman, S. D., Mashburn-Warren, L., Stafford, G. P., & Cieplik, F. (2021). The dental plaque biofilm matrix. Periodontol. 2000 86, 32–56. https://doi.org/10.1111/prd.12361
Kita, K., Kasahara, M., & Anraku, Y. (1982). Formation of a membrane potential by reconstituted liposomes made with cytochrome b562-o complex, a terminal oxidase of Escherichia coli K12. Journal Of Biological Chemistry, 257, 7933–7935. https://doi.org/10.1016/s0021-9258(18)34273-x
Koh, K. S., Lam, K. W., Alhede, M., Queck, S. Y., Labbate, M., Kjelleberg, S., & Rice, S. A. (2007). Phenotypic diversification and adaptation of Serratia marcescens MG1 biofilm-derived morphotypes. Journal Of Bacteriology, 189, 119–130. https://doi.org/10.1128/JB.00930-06
Kora, A. J., & Arunachalam, J. (2011). Assessment of antibacterial activity of silver nanoparticles on Pseudomonas aeruginosa and its mechanism of action. World Journal Of Microbiology & Biotechnology, 27, 1209–1216. https://doi.org/10.1007/s11274-010-0569-2
Kumar, S., Paliya, B. S., & Singh, B. N. (2022). Superior inhibition of virulence and biofilm formation of Pseudomonas aeruginosa PAO1 by phyto-synthesized silver nanoparticles through anti-quorum sensing activity. Microbial Pathogenesis, 170, 105678. https://doi.org/10.1016/j.micpath.2022.105678
Kurvet, I., Kahru, A., Bondarenko, O., Ivask, A., & Ka, A. (2013). Particle-Cell Contact Enhances Antibacterial Activity of Silver Nanoparticles 8. https://doi.org/10.1371/journal.pone.0064060
Langevin, S., Vincelette, J., Bekal, S., & Gaudreau, C. (2011). First case of invasive human infection caused by Cupriavidus metallidurans. Journal Of Clinical Microbiology, 49, 744–745. https://doi.org/10.1128/JCM.01947-10
Le Brun, N. E., Keech, A. M., Mauk, M. R., Mauk, A. G., Andrews, S. C., Thomson, A. J., & Moore, G. R. (1996). Charge compensated binding of divalent metals to bacterioferritin: H + release associated with cobalt(II) and zinc(II) binding at dinuclear metal sites. Febs Letters, 397, 159–163. https://doi.org/10.1016/S0014-5793(96)01172-6
Lee, W., Kim, K. J., & Lee, D. G. (2014). A novel mechanism for the antibacterial effect of silver nanoparticles on Escherichia coli. BioMetals, 27, 1191–1201. https://doi.org/10.1007/s10534-014-9782-z
Liao, S., Zhang, Y., Pan, X., Zhu, F., Jiang, C., Liu, Q., Cheng, Z., Dai, G., Wu, G., Wang, L., & Chen, L. (2019). Antibacterial activity and mechanism of silver nanoparticles against multidrug-resistant Pseudomonas aeruginosa. Int J Nanomedicine, 14, 1469–1487. https://doi.org/10.2147/IJN.S191340
Liu, C., Guo, D., Wen, S., Dang, Y., Sun, D., & Li, P. (2024). Transcriptomic insights unveil the crucial roles of cytochromes, NADH, and pili in Ag(I) reduction by Geobacter sulfurreducens. Chemosphere, 358, 142174. https://doi.org/10.1016/j.chemosphere.2024.142174
Liu, G., Zhang, Y., Knibbe, W. J., Feng, C., Liu, W., Medema, G., & van der Meer, W. (2017). Potential impacts of changing supply-water quality on drinking water distribution: A review. Water Research, 116, 135–148. https://doi.org/10.1016/j.watres.2017.03.031
Louis, G., Cherry, P., Michaux, C., Rahuel-Clermont, S., Dieu, M., Tilquin, F., Maertens, L., Van Houdt, R., Renard, P., Perpete, E., & Matroule, J. Y. (2023). A cytoplasmic chemoreceptor and reactive oxygen species mediate bacterial chemotaxis to copper. Journal Of Biological Chemistry, 299, 1–11. https://doi.org/10.1016/j.jbc.2023.105207
Márquez, I. G., Ghiyasvand, M., Massarsky, A., Babu, M., Samanfar, B., Omidi, K., Moon, T. W., Smith, M. L., & Golshani, A. (2018). Zinc oxide and silver nanoparticles toxicity in the baker’s yeast. Saccharomyces cerevisiae PLoS One, 13, 1–19. https://doi.org/10.1371/journal.pone.0193111
Martic, M., Jakab-Simon, I. N., Haahr, L. T., Hagen, W. R., & Christensen, H. E. M. (2013). Heterometallic [AgFe3S4] ferredoxin variants: Synthesis, characterization, and the first crystal structure of an engineered heterometallic iron-sulfur protein. Jbic Journal Of Biological Inorganic Chemistry, 18, 261–276. https://doi.org/10.1007/s00775-012-0971-3
Martin, C. S., Maximino, M. D., Martins, J. F. V. A., Pazin, W. M., & Constantino, C. J. L. (2024). Exploring the effects of silver, silica-coated silver, and gold nanoparticles on lipid vesicles: Insights from LUVs and GUVs. Journal Of Molecular Liquids, 406. https://doi.org/10.1016/j.molliq.2024.125081
Matoulková, D., Kosar, K., Slabý, M., & Sigler, K. (2012). Occurrence and species distribution of strictly anaerobic bacterium Pectinatus in brewery bottling halls. Journal Of The American Society Of Brewing Chemists, 70, 262–267. https://doi.org/10.1094/ASBCJ-2012-0910-01
Mazur, P., Skiba-Kurek, I., Mrowiec, P., Karczewska, E., & Drożdż, R. (2020). Synergistic ros-associated antimicrobial activity of silver nanoparticles and gentamicin against Staphylococcus epidermidis. Int J Nanomedicine, 15, 3551–3562. https://doi.org/10.2147/IJN.S246484
Merbt, S. N., Bernal, S., Proia, L., Martí, E., & Casamayor, E. O. (2017). Photoinhibition on natural ammonia oxidizers biofilm populations and implications for nitrogen uptake in stream biofilms. Limnology And Oceanography, 62, 364–375. https://doi.org/10.1002/lno.10436
Mergeay, M., Nies, D., Schlegel, H. G., Gerits, J., Charles, P., & Van Gijsegem, F. (1985). Alcaligenes eutrophus CH34 is a facultative chemolithotroph with plasmid-bound resistance to heavy metals. Journal Of Bacteriology, 162, 328–334. https://doi.org/10.1128/jb.162.1.328-334.1985
Metcalf, D. G., & Bowler, P. G. (2013). Biofilm delays wound healing: A review of the evidence. Burn Trauma, 1, 5–12. https://doi.org/10.4103/2321-3868.113329
Molina-Hernandez, J. B., Aceto, A., Bucciarelli, T., Paludi, D., Valbonetti, L., Zilli, K., Scotti, L., & Chaves-López, C. (2021). The membrane depolarization and increase intracellular calcium level produced by silver nanoclusters are responsible for bacterial death. Scientific Reports, 11, 1–13. https://doi.org/10.1038/s41598-021-00545-7
Monchy, S., Vallaeys, T., Bossus, A., & Mergeay, M. (2006). Metal transport ATPase genes from Cupriavidus metallidurans CH34: A transcriptomic approach. International Journal Of Environmental Analytical Chemistry, 86, 677–692. https://doi.org/10.1080/03067310600583824
Novackova, I., Hrabalova, V., Slaninova, E., Sedlacek, P., Samek, O., Koller, M., Krzyzanek, V., Hrubanova, K., Mrazova, K., Nebesarova, J., & Obruca, S. (2022). The role of polyhydroxyalkanoates in adaptation of Cupriavidus necator to osmotic pressure and high concentration of copper ions. International Journal Of Biological Macromolecules, 206, 977–989. https://doi.org/10.1016/j.ijbiomac.2022.03.102
Perez-Riverol, Y., Bai, J., Bandla, C., García-Seisdedos, D., Hewapathirana, S., Kamatchinathan, S., Kundu, D. J., Prakash, A., Frericks-Zipper, A., Eisenacher, M., Walzer, M., Wang, S., Brazma, A., & Vizcaíno, J. A. (2022). The PRIDE database resources in 2022: A hub for mass spectrometry-based proteomics evidences. Nucleic Acids Research, 50, D543–D552. https://doi.org/10.1093/nar/gkab1038
Przemieniecki, S. W., Oćwieja, M., Ciesielski, S., Halecki, W., Matras, E., & Gorczyca, A. (2022). Chemical Structure of Stabilizing Layers of Negatively Charged Silver Nanoparticles as an Effector of Shifts in Soil Bacterial Microbiome under Short-Term Exposure. International Journal Of Environmental Research And Public Health, 19. https://doi.org/10.3390/ijerph192114438
Radu, V., Frielingsdorf, S., Evans, S. D., Lenz, O., & Jeuken, L. J. C. (2014). Enhanced oxygen-tolerance of the full heterotrimeric membrane-bound [NiFe]-hydrogenase of Ralstonia eutropha. Journal Of The American Chemical Society, 136, 8512–8515. https://doi.org/10.1021/ja503138p
Radzig, M. A., Nadtochenko, V. A., Koksharova, O. A., Kiwi, J., Lipasova, V. A., & Khmel, I. A. (2013). Antibacterial effects of silver nanoparticles on gram-negative bacteria: Influence on the growth and biofilms formation, mechanisms of action. Colloids Surfaces B Biointerfaces, 102, 300–306. https://doi.org/10.1016/j.colsurfb.2012.07.039
Randall, C. P., Gupta, A., Jackson, N., Busse, D., & O’Neill, A. J. (2014). Silver resistance in Gram-negative bacteria: A dissection of endogenous and exogenous mechanisms. Journal Of Antimicrobial Chemotherapy, 70, 1037–1046. https://doi.org/10.1093/jac/dku523
Rodríguez-Rojas, A., Kim, J. J., Johnston, P. R., Makarova, O., Eravci, M., Weise, C., Hengge, R., & Rolff, J. (2020). Non-lethal exposure to H2O2 boosts bacterial survival and evolvability against oxidative stress. PLoS Genetics. https://doi.org/10.1371/journal.pgen.1008649
Ryder, V. J., Chopra, I., & O’Neill, A. J. (2012). Increased Mutability of Staphylococci in Biofilms as a Consequence of Oxidative Stress. PLoS One, 7. https://doi.org/10.1371/journal.pone.0047695
Schacht, V. J., Neumann, L. V., Sandhi, S. K., Chen, L., Henning, T., Klar, P. J., Theophel, K., Schnell, S., & Bunge, M. (2013). Effects of silver nanoparticles on microbial growth dynamics. Journal Of Applied Microbiology, 114, 25–35. https://doi.org/10.1111/jam.12000
Schneider, G. (2017). Antimicrobial silver nanoparticles - Regulatory situation in the European Union. Mater. Today Proc. 4, S200–S207. https://doi.org/10.1016/j.matpr.2017.09.187
Seong, M., & Lee, D. G. (2017). Silver Nanoparticles Against Salmonella enterica Serotype Typhimurium: Role of Inner Membrane Dysfunction. Current Microbiology, 74, 661–670. https://doi.org/10.1007/s00284-017-1235-9
Sillen, W. M. A., Thijs, S., Abbamondi, G. R., Janssen, J., Weyens, N., White, J. C., & Vangronsveld, J. (2015). Effects of silver nanoparticles on soil microorganisms and maize biomass are linked in the rhizosphere. Soil Biology & Biochemistry, 91, 14–22. https://doi.org/10.1016/j.soilbio.2015.08.019
Sim, W., Barnard, R. T., Blaskovich, M. A. T., & Ziora, Z. M. (2018). Antimicrobial silver in medicinal and consumer applications: A patent review of the past decade (2007–2017). Antibiotics, 7, 1–15. https://doi.org/10.3390/antibiotics7040093
Souza-Egipsy, V., González-Toril, E., Zettler, E., Amaral-Zettler, L., Aguilera, A., & Amils, R. (2008). Prokaryotic community structure in algal photosynthetic biofilms from extreme acidic streams in Río Tinto (Huelva, Spain). International Microbiology : The Official Journal Of The Spanish Society For Microbiology, 11, 251–260. https://doi.org/10.2436/20.1501.01.69
Staley, B. J. T., Wiley, A. R., & York, N. (1963). Biodiversity of Microbial Life: Foundation of Earth’s Biosphere. Acta Paediatrica, 52, 534–534. https://doi.org/10.1111/j.1651-2227.1963.tb03813.x
Stewart, P. S., & Franklin, M. J. (2008). Physiological heterogeneity in biofilms. Nature Reviews Microbiology, 6, 199–210. https://doi.org/10.1038/nrmicro1838
Stone, M., Emelko, M. B., Droppo, I. G., & Silins, U. (2011). Biostabilization and erodibility of cohesive sediment deposits in wildfire-affected streams. Water Research, 45, 521–534. https://doi.org/10.1016/j.watres.2010.09.016
Thuptimdang, P., Limpiyakorn, T., McEvoy, J., Prüß, B. M., & Khan, E. (2015). Effect of silver nanoparticles on Pseudomonas putida biofilms at different stages of maturity. Journal Of Hazardous Materials, 290, 127–133. https://doi.org/10.1016/j.jhazmat.2015.02.073
Tso, W. W., & Adler, J. (1974). Negative chemotaxis in Escherichia coli. Journal Of Bacteriology, 118, 560–576. https://doi.org/10.1128/jb.118.2.560-576.1974
Valdiglesias, V. (2022). Cytotoxicity and Genotoxicity of Nanomaterials. Nanomaterials, 12, 279–290. https://doi.org/10.3390/nano12040634
Wójtowicz, H., Guevara, T., Tallant, C., Olczak, M., Sroka, A., Potempa, J., Solà, M., Olczak, T., & Gomis-Rüth, F. X. (2009). Unique structure and stability of HmuY, a novel heme-binding protein of Porphyromonas gingivalis. PLoS Pathog. 5. https://doi.org/10.1371/journal.ppat.1000419
A
Wu, K., Li, H., Cui, X., Feng, R., Chen, W., Jiang, Y., & Tang, C. Wang, Yaohai, Wang, Yan, 2022. Mutagenesis and Resistance Development of Bacteria.
Antimicrobial Agents And Chemotherapy. 66.
Xiao, X., He, E. J., Lu, X. R., Wu, L. J., Fan, Y. Y., & Yu, H. Q. (2021). Evaluation of antibacterial activities of silver nanoparticles on culturability and cell viability of Escherichia coli. Science Of The Total Environment, 794, 148765. https://doi.org/10.1016/j.scitotenv.2021.148765
Zaitsev, S. Y., Zaitsev, I. S., & Milaeva, I. V. (2021). Structural changes of the lipid model systems in the presence of enzymes or silver nanoparticles. Biointerface Res Appl Chem, 11, 15068–15074. https://doi.org/10.33263/BRIAC116.1506815074
Ziege, R., Tsirigoni, A. M., Large, B., Serra, D. O., Blank, K. G., Hengge, R., Fratzl, P., & Bidan, C. M. (2021). Adaptation of Escherichia coli Biofilm Growth, Morphology, and Mechanical Properties to Substrate Water Content. ACS Biomater Sci Eng, 7, 5315–5325. https://doi.org/10.1021/acsbiomaterials.1c00927