{"text_format":"3","workbook":"xlsx","n_sheets":2,"sheets":["Supplemental Table 6A. ","Supplemental Table 6B. "],"read":"whole","date_system":"1900"}

{"sheet":"Supplemental Table 6A. ","index":0,"n_rows":174,"n_cols":10,"rows_kept":174}
["Supplemental Table 6.  Summary of linear model test of all identified TE- genes loci pairs. A. AT2 linear model analysis summary"]
["Gene","TE locus","Distance from the gene ","Genomic region","p value1","p.adjust1","p value2","p.adjust2",null,"p value1  - represents relationship between gene expression and adjacent TE-locus expression"]
["ABCA13","chr7|48646297|48646415|MER5A:hAT-Charlie:DNA|226|+,.",0,"UTR3",{"v":1.06942295409547E-4,"d":"0.0001"},{"v":4.39827544220179E-3,"d":"0.0044"},{"v":0.118435992314002,"d":"0.1184"},{"v":0.152484919762897,"d":"0.1525"},null,"p.adjust1 - BH adjusted p value1 "]
["ABCA13","chr7|48646510|48646818|AluY:Alu:SINE|75|-,.",0,"UTR3",{"v":6.88804422966534e-05,"d":"0.0001"},{"v":0.00317998041936217,"d":"0.0032"},{"v":0.0400358320968474,"d":"0.0400"},{"v":0.0651625904027523,"d":"0.0652"},null,"p value2 - represent difference in the regression slopes between the two groups (IPF and donor)"]
["ABHD6","chr3|58275643|58281729|L1PA6:L1:LINE|64|-,.",0,"Intron",{"v":1.02857744444382E-3,"d":"0.0010"},{"v":0.0148008286810876,"d":"0.0148"},{"v":0.412023714577443,"d":"0.4120"},{"v":0.447706781498868,"d":"0.4477"},null,"p.adjust2 - BH adjusted p value2 "]
["ALOX15","chr17|4629842|4630155|AluSx1:Alu:SINE|86|+,.",765,"Intergenic",{"v":0.00106754620658957,"d":"0.0011"},{"v":0.0149726733784967,"d":"0.0150"},{"v":0.23364378716577,"d":"0.2336"},{"v":0.271022953190725,"d":"0.2710"}]
["ALOX15","chr17|4630560|4630859|AluSq2:Alu:SINE|90|+,.",61,"Intergenic",{"v":0.000240920629958041,"d":"0.0002"},{"v":0.00635571566651214,"d":"0.0064"},{"v":0.876186846792278,"d":"0.8762"},{"v":0.887591260414194,"d":"0.8876"}]
["ALOX15","chr17|4631029|4631247|AluJb:Alu:SINE|151|+,.",0,"UTR3",{"v":8.12914096535734e-05,"d":"0.0001"},{"v":3.60283527584637E-3,"d":"0.0036"},{"v":0.878779433045433,"d":"0.8788"},{"v":0.889970787115196,"d":"0.8900"}]
["B3GNT3","chr19|17813591|17813897|AluSz:Alu:SINE|105|-,.",-16,"Intergenic",{"v":0.00231940586855537,"d":"0.0023"},{"v":0.0247105932919168,"d":"0.0247"},{"v":0.0120013827348972,"d":"0.0120"},{"v":0.0277429277930894,"d":"0.0277"}]
["B3GNT3","chr19|17814300|17814610|AluSz6:Alu:SINE|123|-,.",-725,"Intergenic",{"v":0.00115890570054243,"d":"0.0012"},{"v":0.0154706929662773,"d":"0.0155"},{"v":0.0288560302485451,"d":"0.0289"},{"v":0.0512330247380279,"d":"0.0512"}]
["B3GNT3","chr19|17814640|17814928|AluJb:Alu:SINE|167|+,.",-1065,"Intergenic",{"v":0.00461861487214894,"d":"0.0046"},{"v":0.0350684807791747,"d":"0.0351"},{"v":0.00133517007585756,"d":"0.0013"},{"v":6.88771618360225E-3,"d":"0.0069"}]
["BCAS1","chr20|53944315|53944608|AluSx:Alu:SINE|113|-,.",0,"Intron",{"v":2.33768291070244e-06,"d":"0.0000"},{"v":0.000287794740562034,"d":"0.0003"},{"v":0.151408148142196,"d":"0.1514"},{"v":0.187032818643426,"d":"0.1870"}]
["CAPN13","chr2|30723851|30724566|HAL1:L1:LINE|266|-,.",0,"Intron",{"v":0.000845677544818305,"d":"0.0008"},{"v":0.0135798655022997,"d":"0.0136"},{"v":0.201913120339964,"d":"0.2019"},{"v":0.238896221099983,"d":"0.2389"}]
["CAPN13","chr2|30726207|30728352|L1MB8:L1:LINE|180|+,.",0,"Intron",{"v":0.000528935170182481,"d":"0.0005"},{"v":0.0107856222325354,"d":"0.0108"},{"v":0.0104552536302188,"d":"0.0105"},{"v":0.025284545429048,"d":"0.0253"}]
["CAPN13","chr2|30729370|30729660|L3:CR1:LINE|356|+,.",0,"Intron",{"v":0.00741359029162305,"d":"0.0074"},{"v":0.0480365967433821,"d":"0.0480"},{"v":0.6320004463874,"d":"0.6320"},{"v":0.659421652603467,"d":"0.6594"}]
["CCDC113","chr16|58281869|58282009|AluSz:Alu:SINE|148|-,.",0,"UTR3",{"v":0.000149023238274791,"d":"0.0001"},{"v":0.00515992962526462,"d":"0.0052"},{"v":0.313014920105686,"d":"0.3130"},{"v":0.35034031851525,"d":"0.3503"}]
["CCDC113","chr16|58282009|58282304|AluSx1:Alu:SINE|68|-,.",0,"UTR3",{"v":1.5738020400447E-3,"d":"0.0016"},{"v":0.0193752517818836,"d":"0.0194"},{"v":0.922679036943944,"d":"0.9227"},{"v":0.930106814472273,"d":"0.9301"}]
["CCDC113","chr16|58283437|58283607|MER104:TcMar-Tc2:DNA|260|+,.",0,"UTR3",{"v":3.29687150132933e-05,"d":"0.0000"},{"v":1.8885628212903E-3,"d":"0.0019"},{"v":0.342792239354822,"d":"0.3428"},{"v":0.379777527196716,"d":"0.3798"}]
["CCDC170","chr6|151618446|151618632|MIRb:MIR:SINE|333|-,.",0,"UTR3",{"v":4.35462246250365E-4,"d":"0.0004"},{"v":0.0094606307616746,"d":"0.0095"},{"v":0.808125076029472,"d":"0.8081"},{"v":0.824755944366319,"d":"0.8248"}]
["CCDC170","chr6|151619615|151619840|AluSz6:Alu:SINE|138|+,.",0,"UTR3",{"v":2.80718859125078E-4,"d":"0.0003"},{"v":0.00723340688164156,"d":"0.0072"},{"v":0.502042770292918,"d":"0.5020"},{"v":0.53508207326093,"d":"0.5351"}]
["CCDC170","chr6|151619879|151620076|L1MC5a:L1:LINE|313|+,.",0,"UTR3",{"v":0.00196495775179723,"d":"0.0020"},{"v":0.022172587023667,"d":"0.0222"},{"v":0.732471912336711,"d":"0.7325"},{"v":0.754232590916444,"d":"0.7542"}]
["CCDC173","chr2|169686861|169687215|THE1A:ERVL-MaLR:LTR|90|-,.",0,"Intron",{"v":5.9603221906128E-4,"d":"0.0006"},{"v":0.0115860298021035,"d":"0.0116"},{"v":0.372060783844349,"d":"0.3721"},{"v":0.408578419120862,"d":"0.4086"}]
["CCP110","chr16|19552247|19552546|AluSx:Alu:SINE|134|+,.",0,"UTR3",{"v":0.00346605763992438,"d":"0.0035"},{"v":0.0297704795739241,"d":"0.0298"},{"v":0.576919802302596,"d":"0.5769"},{"v":0.606968855673431,"d":"0.6070"}]
["CDHR3","chr7|106032895|106033191|L4_A_Mam:RTE-X:LINE|281|+,.",0,"UTR3",{"v":0.00299581333909449,"d":"0.0030"},{"v":0.027905113843213,"d":"0.0279"},{"v":0.29618503641108,"d":"0.2962"},{"v":0.333623092203115,"d":"0.3336"}]
["CDHR3","chr7|106033245|106033461|L1ME3:L1:LINE|227|-,.",0,"UTR3",{"v":0.00353982241115695,"d":"0.0035"},{"v":0.0301701787043223,"d":"0.0302"},{"v":0.597891027523321,"d":"0.5979"},{"v":0.62697887373291,"d":"0.6270"}]
["CDHR3","chr7|106033461|106033757|AluSx1:Alu:SINE|145|+,.",0,"UTR3",{"v":3.03012457584142E-3,"d":"0.0030"},{"v":0.0279781502502691,"d":"0.0280"},{"v":0.480716468623386,"d":"0.4807"},{"v":0.514479799981232,"d":"0.5145"}]
["CFAP157","chr9|127709989|127710304|AluJo:Alu:SINE|140|+,.",0,"Intron",{"v":0.000367138144999995,"d":"0.0004"},{"v":0.00865508648212754,"d":"0.0087"},{"v":0.37158779075667,"d":"0.3716"},{"v":0.408112375466972,"d":"0.4081"}]
["CFAP157","chr9|127715888|127715989|MIR1_Amn:MIR:SINE|313|+,.",0,"UTR3",{"v":1.4562953470841E-3,"d":"0.0015"},{"v":0.0181300589277437,"d":"0.0181"},{"v":0.626795035907251,"d":"0.6268"},{"v":0.654478680508986,"d":"0.6545"}]
["CFAP70","chr10|73295034|73295306|AluJb:Alu:SINE|140|+,.",0,"Intron",{"v":0.00705121232641129,"d":"0.0071"},{"v":0.0467828937584654,"d":"0.0468"},{"v":0.881817020286643,"d":"0.8818"},{"v":0.89275332789555,"d":"0.8928"}]
["CFAP73","chr12|113151512|113151811|AluJr:Alu:SINE|137|+,.",0,"Intron",{"v":1.45649470832398E-4,"d":"0.0001"},{"v":0.00515992962526462,"d":"0.0052"},{"v":0.287749594740839,"d":"0.2877"},{"v":0.325226617693289,"d":"0.3252"}]
["CFH","chr1|196721318|196723764|L1PA15-16:L1:LINE|266|-,.",0,"Intron",{"v":0.00753076505878804,"d":"0.0075"},{"v":0.0482853280244754,"d":"0.0483"},{"v":0.00201883101571749,"d":"0.0020"},{"v":0.00885457688387101,"d":"0.0089"}]
["CHL1","chr3|367661|374053|L1PA6:L1:LINE|129|-,.",0,"Intron",{"v":0.00126829038815127,"d":"0.0013"},{"v":0.0161524798858806,"d":"0.0162"},{"v":1.5215632903831E-4,"d":"0.0002"},{"v":1.9208693723575E-3,"d":"0.0019"}]
["CHL1","chr3|391232|391535|AluSz:Alu:SINE|129|+,.",0,"Intron",{"v":9.873086895368869E-4,"d":"0.0010"},{"v":0.014393921421143,"d":"0.0144"},{"v":9.08259019166648E-4,"d":"0.0009"},{"v":0.00546870789026653,"d":"0.0055"}]
["CHL1","chr3|408347|408547|MIRc:MIR:SINE|342|+,.",0,"UTR3",{"v":1.65385960855876E-4,"d":"0.0002"},{"v":0.00543506280119685,"d":"0.0054"},{"v":0.00438853814039019,"d":"0.0044"},{"v":0.0143610266023616,"d":"0.0144"}]
["CLMN","chr14|95188000|95189011|L1M6B:L1:LINE|252|+,.",0,"UTR3",{"v":0.00651654047119875,"d":"0.0065"},{"v":0.0442964836937928,"d":"0.0443"},{"v":0.263984403410208,"d":"0.2640"},{"v":0.301503347769162,"d":"0.3015"}]
["CLU","chr8|27604462|27604777|AluJo:Alu:SINE|143|-,.",0,"Intron",{"v":0.00727252254843308,"d":"0.0073"},{"v":0.0477736941881729,"d":"0.0478"},{"v":0.963439568710577,"d":"0.9634"},{"v":0.967078020840449,"d":"0.9671"}]
["CORO2B","chr15|68726587|68726826|MIRc:MIR:SINE|326|-,.",0,"UTR3",{"v":0.00587642404731742,"d":"0.0059"},{"v":0.0425560643426647,"d":"0.0426"},{"v":0.121428656949732,"d":"0.1214"},{"v":0.155656681114078,"d":"0.1557"}]
["CP","chr3|149173918|149174530|L1MC4:L1:LINE|200|+,.",0,"Intron",{"v":0.00181230700953243,"d":"0.0018"},{"v":0.0211372228059151,"d":"0.0211"},{"v":0.742218264464859,"d":"0.7422"},{"v":0.763353959605647,"d":"0.7634"}]
["CYP24A1","chr20|54156184|54156723|MLT1E2:ERVL-MaLR:LTR|260|+,.",0,"Intron",{"v":0.00790267295746402,"d":"0.0079"},{"v":0.0497509183913076,"d":"0.0498"},{"v":3.10791277237309E-3,"d":"0.0031"},{"v":0.0115577201363606,"d":"0.0116"}]
["CYP7B1","chr8|64591905|64592198|AluSx1:Alu:SINE|133|+,.",0,"Intron",{"v":0.00327270203395834,"d":"0.0033"},{"v":0.0293186241327914,"d":"0.0293"},{"v":0.130202836534127,"d":"0.1302"},{"v":0.164902678777636,"d":"0.1649"}]
["DGKH","chr13|42240834|42241128|AluSx:Alu:SINE|102|+,.",0,"Intron",{"v":0.00414923744200408,"d":"0.0041"},{"v":0.0328533235689916,"d":"0.0329"},{"v":0.00496403851666113,"d":"0.0050"},{"v":0.0155312754078101,"d":"0.0155"}]
["DNAAF1","chr16|84173181|84173479|AluY:Alu:SINE|87|+,.",0,"Intron",{"v":0.000708216859908485,"d":"0.0007"},{"v":0.0122282532022662,"d":"0.0122"},{"v":0.976578038851323,"d":"0.9766"},{"v":0.978939115162957,"d":"0.9789"}]
["DNAAF1","chr16|84173551|84173874|AluSx1:Alu:SINE|87|+,.",0,"Intron",{"v":0.000318157227310883,"d":"0.0003"},{"v":0.0076634393013143,"d":"0.0077"},{"v":0.482705905496066,"d":"0.4827"},{"v":0.516403403775101,"d":"0.5164"}]
["DNAAF1","chr16|84173937|84174191|MIR:MIR:SINE|279|-,.",0,"Intron",{"v":0.000315812422860794,"d":"0.0003"},{"v":0.0076634393013143,"d":"0.0077"},{"v":0.115202679309495,"d":"0.1152"},{"v":0.149052848417443,"d":"0.1491"}]
["DNAJA4","chr15|78269387|78269885|L1MC4:L1:LINE|268|-,.",0,"Intron",{"v":0.00738457196900478,"d":"0.0074"},{"v":0.0480365967433821,"d":"0.0480"},{"v":0.555569633740156,"d":"0.5556"},{"v":0.586551601638118,"d":"0.5866"}]
["DNAJA4","chr15|78277165|78277372|AluJb:Alu:SINE|106|-,.",0,"Intron",{"v":0.00338092976092257,"d":"0.0034"},{"v":0.0295412697302028,"d":"0.0295"},{"v":0.438522637658452,"d":"0.4385"},{"v":0.473531091378596,"d":"0.4735"}]
["DRC1","chr2|26407446|26408136|MER49:ERV1:LTR|275|+,.",0,"Intron",{"v":0.00462093699797789,"d":"0.0046"},{"v":0.0350684807791747,"d":"0.0351"},{"v":0.332704293312712,"d":"0.3327"},{"v":0.369807461118636,"d":"0.3698"}]
["DRC3","chr17|17993203|17993503|AluJo:Alu:SINE|157|+,.",0,"Intron",{"v":0.00121288868424262,"d":"0.0012"},{"v":0.0158103607310685,"d":"0.0158"},{"v":0.930494497876388,"d":"0.9305"},{"v":0.937212853946551,"d":"0.9372"}]
["DRC3","chr17|17993622|17993828|L2:L2:LINE|352|-,.",0,"Intron",{"v":0.00640989870678172,"d":"0.0064"},{"v":0.0442964836937928,"d":"0.0443"},{"v":0.869747051321462,"d":"0.8697"},{"v":0.881683999375162,"d":"0.8817"}]
["DTHD1","chr4|36286981|36288098|L1PB1:L1:LINE|86|-,.",0,"Intron",{"v":0.00109642171200004,"d":"0.0011"},{"v":0.0149979661345191,"d":"0.0150"},{"v":0.532647936541154,"d":"0.5326"},{"v":0.564540158545058,"d":"0.5645"}]
["DTHD1","chr4|36344203|36344822|MER4B:ERV1:LTR|125|-,.",0,"UTR3",{"v":6.86067336787154e-09,"d":"0.0000"},{"v":7.60162609160167e-06,"d":"0.0000"},{"v":0.61535956583377,"d":"0.6154"},{"v":0.643614819271693,"d":"0.6436"}]
["DTHD1","chr4|36345722|36345818|L1ME4a:L1:LINE|287|-,.",0,"UTR3",{"v":7.32496638847187e-07,"d":"0.0000"},{"v":1.15943753691812E-4,"d":"0.0001"},{"v":0.240476588254549,"d":"0.2405"},{"v":0.277904851553593,"d":"0.2779"}]
["DTHD1","chr4|36346616|36347037|LTR33:ERVL:LTR|315|+,.",0,"Intergenic",{"v":2.20911320246542E-7,"d":"0.0000"},{"v":4.07949571388615e-05,"d":"0.0000"},{"v":0.255402303925983,"d":"0.2554"},{"v":0.29291480036654,"d":"0.2929"}]
["DUSP4","chr8|29333651|29333810|MER5B:hAT-Charlie:DNA|252|-,.",0,"UTR3",{"v":0.000945407499666701,"d":"0.0009"},{"v":0.014337230184348,"d":"0.0143"},{"v":0.00642748715301191,"d":"0.0064"},{"v":0.018342139034423,"d":"0.0183"}]
["DYDC2","chr10|80367224|80367640|LTR14B:ERVK:LTR|100|-,.",0,"UTR3",{"v":1.98112465283667E-3,"d":"0.0020"},{"v":0.022172587023667,"d":"0.0222"},{"v":0.33760724987342,"d":"0.3376"},{"v":0.374658413534028,"d":"0.3747"}]
["DYDC2","chr10|80367791|80368820|L1MB3:L1:LINE|136|-,.",0,"UTR3",{"v":0.000456824361882042,"d":"0.0005"},{"v":0.00973387294164043,"d":"0.0097"},{"v":0.513676548249687,"d":"0.5137"},{"v":0.546288143512968,"d":"0.5463"}]
["ECE1","chr1|21218585|21218890|AluSx1:Alu:SINE|88|-,.",0,"Intron",{"v":0.00161867653033462,"d":"0.0016"},{"v":0.0194944956044647,"d":"0.0195"},{"v":0.638225613347304,"d":"0.6382"},{"v":0.665330428037377,"d":"0.6653"}]
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["EFCAB11","chr14|89796316|89796600|AluJr:Alu:SINE|162|-,.",0,"UTR3",{"v":0.00326750871631443,"d":"0.0033"},{"v":0.0293186241327914,"d":"0.0293"},{"v":0.145916809400745,"d":"0.1459"},{"v":0.181325144738859,"d":"0.1813"}]
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["FUT2","chr19|48704451|48704884|MLT1L:ERVL-MaLR:LTR|313|-,.",0,"Intron",{"v":0.00758271396774253,"d":"0.0076"},{"v":0.0482853280244754,"d":"0.0483"},{"v":0.435118639111683,"d":"0.4351"},{"v":0.470219522265971,"d":"0.4702"}]
["FYB2","chr1|56761880|56763953|L1MDa:L1:LINE|163|-,.",0,"Intron",{"v":0.0034494153599089,"d":"0.0034"},{"v":0.0297704795739241,"d":"0.0298"},{"v":0.120368637144839,"d":"0.1204"},{"v":0.154534861096772,"d":"0.1545"}]
["GBP4","chr1|89182159|89182481|LTR2B:ERV1:LTR|64|-,.",0,"Intron",{"v":2.40374187920607E-3,"d":"0.0024"},{"v":0.025246871612774,"d":"0.0252"},{"v":0.0118423009096768,"d":"0.0118"},{"v":0.0274937917956176,"d":"0.0275"}]
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["SAA2","chr11|18242091|18242553|MLT2B1:ERVL:LTR|207|-,.",0,"Intron",{"v":1.76590488125529E-4,"d":"0.0002"},{"v":0.00543506280119685,"d":"0.0054"},{"v":0.486985454668355,"d":"0.4870"},{"v":0.520544387274785,"d":"0.5205"}]
["SAMHD1","chr20|36890464|36890776|AluSq2:Alu:SINE|93|-,.",0,"UTR3",{"v":0.00249009286201116,"d":"0.0025"},{"v":0.025326266755831,"d":"0.0253"},{"v":0.790345812526293,"d":"0.7903"},{"v":0.808252555877946,"d":"0.8083"}]
["SCD5","chr4|82630826|82631136|AluSx1:Alu:SINE|97|+,.",0,"UTR3",{"v":0.000701732293361106,"d":"0.0007"},{"v":0.0122282532022662,"d":"0.0122"},{"v":0.0970863010637433,"d":"0.0971"},{"v":0.129656269625199,"d":"0.1297"}]
["SCGB1A1","chr11|62421526|62421809|AluSx3:Alu:SINE|92|-,.",0,"Intron",{"v":0.00311676847180651,"d":"0.0031"},{"v":0.0285403261715836,"d":"0.0285"},{"v":0.117510827769598,"d":"0.1175"},{"v":0.15150627679047,"d":"0.1515"}]
["SERPINB13","chr18|63598272|63599259|L1MB7:L1:LINE|224|-,.",0,"Intron",{"v":0.002415314432269,"d":"0.0024"},{"v":0.025246871612774,"d":"0.0252"},{"v":0.407520640713956,"d":"0.4075"},{"v":0.443307831253811,"d":"0.4433"}]
["SERPINB3","chr18|63651629|63653187|L1MA8:L1:LINE|185|+,.",2011,"Intron",{"v":0.00634941580251441,"d":"0.0063"},{"v":0.0442731361418372,"d":"0.0443"},{"v":0.0937214778943638,"d":"0.0937"},{"v":0.126016631129405,"d":"0.1260"}]
["SERTM2","chrX|111521777|111521853|MADE2:TcMar-Mariner:DNA|160|-,.",0,"UTR3",{"v":0.000760435158123472,"d":"0.0008"},{"v":0.0127345438345041,"d":"0.0127"},{"v":0.213963679464338,"d":"0.2140"},{"v":0.25114141125364,"d":"0.2511"}]
["SLC26A2","chr5|149983581|149983876|AluJr:Alu:SINE|176|-,.",0,"Intron",{"v":0.004428563874165,"d":"0.0044"},{"v":0.0343136277802435,"d":"0.0343"},{"v":0.178678114067339,"d":"0.1787"},{"v":0.215165240697016,"d":"0.2152"}]
["SLC26A2","chr5|149984377|149984678|AluSc8:Alu:SINE|76|+,.",0,"Intron",{"v":0.000705618774461024,"d":"0.0007"},{"v":0.0122282532022662,"d":"0.0122"},{"v":0.0159261543012977,"d":"0.0159"},{"v":0.0336530084368102,"d":"0.0337"}]
["SLC44A4","chr6|31863223|31863524|AluSx:Alu:SINE|73|-,.",0,"UTR3",{"v":0.00513525629411152,"d":"0.0051"},{"v":0.0384450268505106,"d":"0.0384"},{"v":0.72956283353864,"d":"0.7296"},{"v":0.751514637186011,"d":"0.7515"}]
["SLC5A1","chr22|32112635|32113008|L1MA8:L1:LINE|156|+,.",0,"UTR3",{"v":2.99702937485771E-3,"d":"0.0030"},{"v":0.027905113843213,"d":"0.0279"},{"v":0.0279207358669283,"d":"0.0279"},{"v":0.0500243110129945,"d":"0.0500"}]
["SLFN13","chr17|35439474|35439776|AluSx:Alu:SINE|113|-,.",0,"UTR3",{"v":2.83709902721544E-3,"d":"0.0028"},{"v":0.0268675702748266,"d":"0.0269"},{"v":0.0486153662726633,"d":"0.0486"},{"v":0.0754032595506948,"d":"0.0754"}]
["SLFN13","chr17|35440140|35440509|L1MEa:L1:LINE|260|+,.",0,"UTR3",{"v":0.000189378863143004,"d":"0.0002"},{"v":0.00547335895249699,"d":"0.0055"},{"v":0.574967620952287,"d":"0.5750"},{"v":0.605101003283709,"d":"0.6051"}]
["SLFN5","chr17|35271450|35271747|L1ME4b:L1:LINE|306|+,.",0,"UTR3",{"v":0.005525608518167,"d":"0.0055"},{"v":0.0405602754487345,"d":"0.0406"},{"v":0.0074575963623485,"d":"0.0075"},{"v":0.0202126068522622,"d":"0.0202"}]
["SNORD14D","chr11|123058908|123058995|U14:snRNA:snRNA|70|-,.",0,"UTR5",{"v":0.00266960682433963,"d":"0.0027"},{"v":0.0261763217820205,"d":"0.0262"},{"v":0.609951974053051,"d":"0.6100"},{"v":0.638459645454305,"d":"0.6385"}]
["SNTN","chr3|63664392|63664631|L2c:L2:LINE|333|-,.",0,"Intron",{"v":0.000957540644081004,"d":"0.0010"},{"v":0.014337230184348,"d":"0.0143"},{"v":0.363907540686963,"d":"0.3639"},{"v":0.400568032580913,"d":"0.4006"}]
["SNTN","chr3|63664730|63665052|AluSq2:Alu:SINE|99|-,.",0,"Intron",{"v":1.2568288520885E-3,"d":"0.0013"},{"v":0.0161524798858806,"d":"0.0162"},{"v":0.735496174909816,"d":"0.7355"},{"v":0.757068489494574,"d":"0.7571"}]
["SNTN","chr3|63665052|63665209|L1ME1:L1:LINE|214|+,.",0,"Intron",{"v":0.000921722529805976,"d":"0.0009"},{"v":0.0142444556736261,"d":"0.0142"},{"v":0.87984541818312,"d":"0.8798"},{"v":0.890946199073606,"d":"0.8909"}]
["SP140L","chr2|230403210|230403503|AluSx3:Alu:SINE|106|-,.",0,"UTR3",{"v":0.000682000306693808,"d":"0.0007"},{"v":0.0122282532022662,"d":"0.0122"},{"v":0.0276761237009239,"d":"0.0277"},{"v":0.049708578053847,"d":"0.0497"}]
["ST6GALNAC1","chr17|76624720|76624926|LTR37A:ERV1:LTR|228|-,.",0,"UTR3",{"v":0.000197594186010721,"d":"0.0002"},{"v":0.00547335895249699,"d":"0.0055"},{"v":0.0155455717998072,"d":"0.0155"},{"v":0.0330954489393741,"d":"0.0331"}]
["TAP2","chr6|32833150|32833734|L1MB3:L1:LINE|176|+,.",0,"Intron",{"v":3.40895816117383e-05,"d":"0.0000"},{"v":1.8885628212903E-3,"d":"0.0019"},{"v":0.00703731431107655,"d":"0.0070"},{"v":0.0194585307363771,"d":"0.0195"}]
["TAPBP","chr6|33301291|33301595|AluSx:Alu:SINE|102|+,.",0,"UTR3",{"v":1.95124067953295E-3,"d":"0.0020"},{"v":0.022172587023667,"d":"0.0222"},{"v":0.516373434394398,"d":"0.5164"},{"v":0.548889102236055,"d":"0.5489"}]
["TEX9","chr15|56428623|56428848|Tigger19b:TcMar-Tigger:DNA|325|+,.",0,"Intron",{"v":1.08080695112638E-7,"d":"0.0000"},{"v":3.52609603307291E-5,"d":"0.0000"},{"v":0.280906295548899,"d":"0.2809"},{"v":0.318412585421074,"d":"0.3184"}]
["TEX9","chr15|56438878|56440756|L1MD2:L1:LINE|195|+,.",0,"Intron",{"v":2.71735221838001E-3,"d":"0.0027"},{"v":0.0263110848856838,"d":"0.0263"},{"v":0.189382931667194,"d":"0.1894"},{"v":0.226123080699423,"d":"0.2261"}]
["TNFRSF10C","chr8|23119226|23119329|L1MEc:L1:LINE|220|-,.",-1790,"Intergenic",{"v":0.00364274212325301,"d":"0.0036"},{"v":0.0303470546809349,"d":"0.0303"},{"v":0.817643971278744,"d":"0.8176"},{"v":0.833581645117579,"d":"0.8336"}]
["TNS4","chr17|40472397|40472871|MER66B:ERV1:LTR|169|-,.",2966,"Intergenic",{"v":0.00205051349404599,"d":"0.0021"},{"v":0.0227196895140295,"d":"0.0227"},{"v":0.0669518913518395,"d":"0.0670"},{"v":0.0964769005451385,"d":"0.0965"}]
["TNS4","chr17|40476583|40476881|AluSx:Alu:SINE|117|+,.",0,"UTR3",{"v":1.66332670588383E-3,"d":"0.0017"},{"v":0.0198168386034332,"d":"0.0198"},{"v":0.000446529182091819,"d":"0.0004"},{"v":0.00359289019707307,"d":"0.0036"}]
["TNS4","chr17|40477349|40477505|MIR3:MIR:SINE|327|-,.",0,"UTR3",{"v":0.00446035008261743,"d":"0.0045"},{"v":0.034319915913473,"d":"0.0343"},{"v":0.00522585127504421,"d":"0.0052"},{"v":0.0160505690465952,"d":"0.0161"}]
["TRAF3IP1","chr2|238400084|238400393|AluSc8:Alu:SINE|84|-,.",0,"UTR3",{"v":0.00767502487760376,"d":"0.0077"},{"v":0.0485938717964855,"d":"0.0486"},{"v":0.815355417957517,"d":"0.8154"},{"v":0.831460126949314,"d":"0.8315"}]
["UBD","chr6|29552941|29553057|L3:CR1:LINE|360|+,.",2459,"Intergenic",{"v":0.00757634197974956,"d":"0.0076"},{"v":0.0482853280244754,"d":"0.0483"},{"v":0.0143399841648482,"d":"0.0143"},{"v":0.0313104663225983,"d":"0.0313"}]
["UPK1B","chr3|119204594|119204889|AluSx1:Alu:SINE|105|+,.",0,"UTR3",{"v":0.0006313727879092,"d":"0.0006"},{"v":0.0120613973966102,"d":"0.0121"},{"v":0.698355441850681,"d":"0.6984"},{"v":0.722171680446389,"d":"0.7222"}]
["VNN3","chr6|132720805|132721774|LTR5B:ERVK:LTR|69|-,.",1014,"Intergenic",{"v":8.78621462161656e-06,"d":"0.0000"},{"v":0.000695366128625082,"d":"0.0007"},{"v":0.142929402431142,"d":"0.1429"},{"v":0.178213100174991,"d":"0.1782"}]
["VNN3","chr6|132732645|132734110|L1PA13:L1:LINE|133|+,.",0,"Intron",{"v":3.73832999816669e-06,"d":"0.0000"},{"v":0.000329431034216484,"d":"0.0003"},{"v":0.243457301220106,"d":"0.2435"},{"v":0.280907173116505,"d":"0.2809"}]
["XAF1","chr17|6774578|6774758|L1PA15:L1:LINE|116|+,.",0,"UTR3",{"v":0.00394068819944191,"d":"0.0039"},{"v":0.0321050185660415,"d":"0.0321"},{"v":0.000384245644170789,"d":"0.0004"},{"v":0.00328989155728576,"d":"0.0033"}]
["ZDHHC3","chr3|44921595|44921844|MIRb:MIR:SINE|272|-,.",0,"Intron",{"v":2.12654075576301E-3,"d":"0.0021"},{"v":0.0231000701704453,"d":"0.0231"},{"v":0.434520417477348,"d":"0.4345"},{"v":0.46963780903484,"d":"0.4696"}]
["ZDHHC3","chr3|44922669|44922851|MER5A:hAT-Charlie:DNA|130|-,.",0,"Intron",{"v":0.000717361424320671,"d":"0.0007"},{"v":0.0122282532022662,"d":"0.0122"},{"v":0.889426640526435,"d":"0.8894"},{"v":0.89972215565488,"d":"0.8997"}]
["ZNF483","chr9|111549779|111550651|L1MB4:L1:LINE|206|-,.",0,"Intron",{"v":0.00170513338709867,"d":"0.0017"},{"v":0.0200988063075035,"d":"0.0201"},{"v":0.820913952404401,"d":"0.8209"},{"v":0.836607849047452,"d":"0.8366"}]
["ZNF875","chr19|37364011|37364652|LTR28C:ERV1:LTR|171|+,.",0,"Intron",{"v":1.9035653734476E-4,"d":"0.0002"},{"v":0.00547335895249699,"d":"0.0055"},{"v":0.686625623822232,"d":"0.6866"},{"v":0.711105565957159,"d":"0.7111"}]

{"sheet":"Supplemental Table 6B. ","index":1,"n_rows":107,"n_cols":10,"rows_kept":107}
["Supplemental Table 6.  Summary of linear model test of all identified TE- genes loci pairs. B. AM linear model analysis summary"]
["Gene","TE locus","Distance from the gene ","Genomic region","p value1","p.adjust1","p value2","p.adjust2",null,"p value1  - represents relationship between gene expression and adjacent TE-locus expression"]
["ABHD2","chr15|89196302|89196472|MIR3:MIR:SINE|273|+,.",0,"UTR3",{"v":5.0859967358857e-10,"d":"0.0000"},{"v":3.39066449059047E-9,"d":"0.0000"},{"v":0.361428754441296,"d":"0.3614"},{"v":0.37960515994034,"d":"0.3796"},null,"p.adjust1 - BH adjusted p value1 "]
["ABHD2","chr15|89198595|89198679|MIR3:MIR:SINE|250|+,.",0,"UTR3",{"v":0.000557158570956309,"d":"0.0006"},{"v":0.000815354006277525,"d":"0.0008"},{"v":0.601147573014019,"d":"0.6011"},{"v":0.612858631105928,"d":"0.6129"},null,"p value2 - represent difference in the regression slopes between the two groups (IPF and donor)"]
["ABHD2","chr15|89200250|89200502|SVA_F:SVA:Retroposon|156|-,.",0,"UTR3",{"v":4.10106565605992e-09,"d":"0.0000"},{"v":2.05053282802996E-8,"d":"0.0000"},{"v":0.582506143982572,"d":"0.5825"},{"v":0.594725199636616,"d":"0.5947"},null,"p.adjust2 - BH adjusted p value2 "]
["ABHD2","chr15|89200800|89201095|AluSq:Alu:SINE|78|+,.",0,"UTR3",{"v":1.0944101118727E-10,"d":"0.0000"},{"v":8.75528089498162e-10,"d":"0.0000"},{"v":0.958846216201465,"d":"0.9588"},{"v":0.960444255257411,"d":"0.9604"}]
["ACE","chr17|63498303|63498489|L1ME4a:L1:LINE|232|-,.",0,"UTR3",{"v":0.00831759417302305,"d":"0.0083"},{"v":0.0108490358778562,"d":"0.0108"},{"v":0.526075170739613,"d":"0.5261"},{"v":0.539820472400824,"d":"0.5398"}]
["ARID5B","chr10|62095542|62095688|UCON14:DNA?:DNA?|254|+,.",0,"UTR3",{"v":3.46652664425881e-08,"d":"0.0000"},{"v":1.34188128164857e-07,"d":"0.0000"},{"v":0.240133378459173,"d":"0.2401"},{"v":0.261787068246382,"d":"0.2618"}]
["ATP1A1","chr1|116390243|116390292|L3:CR1:LINE|178|+,.",0,"UTR3",{"v":7.0912454898477e-10,"d":"0.0000"},{"v":4.47868136200907e-09,"d":"0.0000"},{"v":0.681983540129659,"d":"0.6820"},{"v":0.691630337014599,"d":"0.6916"}]
["ATP6V0D2","chr8|86153348|86153657|AluJb:Alu:SINE|149|-,.",0,"UTR3",{"v":1.20832136996751e-07,"d":"0.0000"},{"v":3.91888011881354e-07,"d":"0.0000"},{"v":0.836581962470818,"d":"0.8366"},{"v":0.842031952062204,"d":"0.8420"}]
["ATP6V0D2","chr8|86153753|86154073|AluSg7:Alu:SINE|91|-,.",0,"UTR3",{"v":1.60580534776829E-6,"d":"0.0000"},{"v":3.77836552416068E-6,"d":"0.0000"},{"v":0.713127894221066,"d":"0.7131"},{"v":0.721937499627262,"d":"0.7219"}]
["BIRC3","chr11|102323774|102323940|MER104:TcMar-Tc2:DNA|273|-,.",0,"UTR3",{"v":8.84269983449278e-07,"d":"0.0000"},{"v":2.25771059604071E-6,"d":"0.0000"},{"v":0.912612326995021,"d":"0.9126"},{"v":0.915824406578103,"d":"0.9158"}]
["CCL22","chr16|57364478|57364778|AluSq2:Alu:SINE|100|-,.",0,"UTR5",{"v":3.23784352396227e-07,"d":"0.0000"},{"v":9.25098149703505e-07,"d":"0.0000"},{"v":0.0094102288414181,"d":"0.0094"},{"v":0.0236673555052966,"d":"0.0237"}]
["CCL22","chr16|57364806|57365101|AluSz:Alu:SINE|122|-,.",0,"UTR3",{"v":1.64241016096728E-9,"d":"0.0000"},{"v":8.5690964920032e-09,"d":"0.0000"},{"v":0.00430230256585031,"d":"0.0043"},{"v":0.0150982992136581,"d":"0.0151"}]
["CCL22","chr16|57365617|57365740|AluJo:Alu:SINE|89|-,.",0,"UTR3",{"v":5.74535992121474e-08,"d":"0.0000"},{"v":2.15450997045553e-07,"d":"0.0000"},{"v":0.0884927082757905,"d":"0.0885"},{"v":0.112106212873569,"d":"0.1121"}]
["CCL24","chr7|75811196|75811500|AluSz:Alu:SINE|99|+,.",0,"UTR3",{"v":2.96642136190983e-11,"d":"0.0000"},{"v":3.40979624027323E-10,"d":"0.0000"},{"v":0.100646195051939,"d":"0.1006"},{"v":0.124430711117877,"d":"0.1244"}]
["CD109","chr6|73825697|73825997|AluSx4:Alu:SINE|100|+,.",0,"UTR3",{"v":5.14343033466863E-9,"d":"0.0000"},{"v":2.46884656064094e-08,"d":"0.0000"},{"v":0.544878769819894,"d":"0.5449"},{"v":0.558125595174877,"d":"0.5581"}]
["CD209","chr19|7742487|7742588|MER21C:ERVL:LTR|208|-,.",0,"UTR3",{"v":2.50741893661768e-06,"d":"0.0000"},{"v":5.57204208137262e-06,"d":"0.0000"},{"v":0.663770080841134,"d":"0.6638"},{"v":0.673870210083622,"d":"0.6739"}]
["CEACAM8","chr19|42580488|42580810|MER65-int:ERV1:LTR|189|-,.",0,"UTR3",{"v":2.21671053126955E-7,"d":"0.0000"},{"v":6.48793326225234e-07,"d":"0.0000"},{"v":0.127027294313967,"d":"0.1270"},{"v":0.150807637831003,"d":"0.1508"}]
["CEACAM8","chr19|42581098|42581609|MER65-int:ERV1:LTR|179|-,.",0,"UTR3",{"v":7.36302633295055e-08,"d":"0.0000"},{"v":2.52446617129733e-07,"d":"0.0000"},{"v":0.0472259695860063,"d":"0.0472"},{"v":0.0691565476676589,"d":"0.0692"}]
["CHIT1","chr1|203218847|203219133|Charlie23a:hAT-Charlie:DNA|306|+,.",0,"UTR3",{"v":0.00482174003449209,"d":"0.0048"},{"v":0.00642898671265611,"d":"0.0064"},{"v":0.0229668005174295,"d":"0.0230"},{"v":0.0416797260841559,"d":"0.0417"}]
["CHKA","chr11|68058188|68058895|L1ME1:L1:LINE|263|-,.",0,"Intron",{"v":0.0423611800879222,"d":"0.0424"},{"v":0.0484127772433397,"d":"0.0484"},{"v":1.84189493386639E-3,"d":"0.0018"},{"v":0.00966000517521999,"d":"0.0097"}]
["CLEC5A","chr7|141927300|141927466|L2a:L2:LINE|337|-,.",0,"Intron",{"v":4.60176078941066e-06,"d":"0.0000"},{"v":9.68791745139087E-6,"d":"0.0000"},{"v":0.881712410196344,"d":"0.8817"},{"v":0.885800749053983,"d":"0.8858"}]
["CLEC5A","chr7|141927725|141927845|MIRc:MIR:SINE|342|-,.",0,"UTR3",{"v":1.71349100112146e-06,"d":"0.0000"},{"v":3.95421000258798e-06,"d":"0.0000"},{"v":0.523116511627945,"d":"0.5231"},{"v":0.536965624005201,"d":"0.5370"}]
["CLEC5A","chr7|141927895|141928088|MIRb:MIR:SINE|395|-,.",0,"UTR3",{"v":8.5008252780272e-11,"d":"0.0000"},{"v":7.28642166688046e-10,"d":"0.0000"},{"v":0.268389739921211,"d":"0.2684"},{"v":0.289290138255336,"d":"0.2893"}]
["CLEC5A","chr7|141928631|141928844|hAT-N1_Mam:hAT-Tip100?:DNA|305|-,.",0,"UTR3",{"v":4.28322879060372e-10,"d":"0.0000"},{"v":3.02345561689674e-09,"d":"0.0000"},{"v":0.341370616617027,"d":"0.3414"},{"v":0.360211348024055,"d":"0.3602"}]
["CLEC5A","chr7|141936137|141943732|L1MA3:L1:LINE|129|+,.",0,"UTR3",{"v":2.90038128396834e-05,"d":"0.0000"},{"v":5.49695110212023e-05,"d":"0.0001"},{"v":0.24634077127341,"d":"0.2463"},{"v":0.267826975216786,"d":"0.2678"}]
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["TDRD6","chr6|46698648|46699867|L1MEf:L1:LINE|288|-,.",0,"Intron",{"v":1.03111903664053e-09,"d":"0.0000"},{"v":6.18671421984317e-09,"d":"0.0000"},{"v":0.382645106291871,"d":"0.3826"},{"v":0.400194946701724,"d":"0.4002"}]
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["TMPO","chr12|98549221|98549461|AluSz:Alu:SINE|108|-,.",0,"UTR3",{"v":1.95876325386406E-5,"d":"0.0000"},{"v":3.85330476169979e-05,"d":"0.0000"},{"v":0.274289786799852,"d":"0.2743"},{"v":0.294991298867895,"d":"0.2950"}]
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