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["Supplemental Table 1. Summary of the samples used in the bulk RNA-seq and scRNA-seq analyses. "]
["Bulk Sequencing samples "]
["Sample ID","Histological type","Age","Sex","Race","Smoking history","Phenotype","Analyzed phenotye"]
["Donor1","Whole Lung Tissue",41,"M","Caucasian","No","Healthy Donor ","Donor"]
["Donor2","Whole Lung Tissue",57,"M","Caucasian","Yes","Healthy Donor ","Donor"]
["Donor3","Whole Lung Tissue",64,"M","African American","No","Healthy Donor ","Donor"]
["Donor4","Whole Lung Tissue",49,"F","Caucasian","No","Healthy Donor ","Donor"]
["Donor5","Whole Lung Tissue",50,"M","African American","No","Healthy Donor ","Donor"]
["Donor6","Whole Lung Tissue",19,"M","African American","No","Healthy Donor ","Donor"]
["Donor7","Whole Lung Tissue",54,"M","Caucasian","No","Healthy Donor ","Donor"]
["Donor8","Whole Lung Tissue",43,"M","Hispanic","No","Healthy Donor ","Donor"]
["Donor9","Whole Lung Tissue",21,"M","Caucasian","No","Healthy Donor ","Donor"]
["Donor10","Whole Lung Tissue",43,"F","Caucasian","Yes","Healthy Donor ","Donor"]
["Donor11","Whole Lung Tissue",50,"M","Hispanic","Yes","Healthy Donor ","Donor"]
["Donor12","Whole Lung Tissue",51,"M","African American","Yes","Healthy Donor ","Donor"]
["Donor13","Whole Lung Tissue",26,"F","African American","Yes","Healthy Donor ","Donor"]
["Donor14","Whole Lung Tissue",40,"M","Hispanic","Yes","Healthy Donor ","Donor"]
["Donor1","Alveolar Type II Cells",41,"M","Caucasian","No","Healthy Donor ","Donor"]
["Donor2","Alveolar Type II Cells",57,"M","Caucasian","Yes","Healthy Donor ","Donor"]
["Donor3","Alveolar Type II Cells",64,"M","African American","No","Healthy Donor ","Donor"]
["Donor4","Alveolar Type II Cells",49,"F","Caucasian","No","Healthy Donor ","Donor"]
["Donor5","Alveolar Type II Cells",50,"M","African American","No","Healthy Donor ","Donor"]
["Donor6","Alveolar Type II Cells",19,"M","African American","No","Healthy Donor ","Donor"]
["Donor7","Alveolar Type II Cells",54,"M","Caucasian","No","Healthy Donor ","Donor"]
["Donor8","Alveolar Type II Cells",43,"M","Hispanic","No","Healthy Donor ","Donor"]
["Donor9","Alveolar Type II Cells",21,"M","Caucasian","No","Healthy Donor ","Donor"]
["Donor10","Alveolar Type II Cells",43,"F","Caucasian","Yes","Healthy Donor ","Donor"]
["Donor11","Alveolar Type II Cells",50,"M","Hispanic","Yes","Healthy Donor ","Donor"]
["Donor12","Alveolar Type II Cells",51,"M","African American","Yes","Healthy Donor ","Donor"]
["Donor13","Alveolar Type II Cells",26,"F","African American","Yes","Healthy Donor ","Donor"]
["Donor14","Alveolar Type II Cells",40,"M","Hispanic","Yes","Healthy Donor ","Donor"]
["Donor1","Alveolar Macrophages",41,"M","Caucasian","No","Healthy Donor ","Donor"]
["Donor2","Alveolar Macrophages",57,"M","Caucasian","Yes","Healthy Donor ","Donor"]
["Donor3","Alveolar Macrophages",64,"M","African American","No","Healthy Donor ","Donor"]
["Donor4","Alveolar Macrophages",49,"F","Caucasian","No","Healthy Donor ","Donor"]
["Donor5","Alveolar Macrophages",50,"M","African American","No","Healthy Donor ","Donor"]
["Donor6","Alveolar Macrophages",19,"M","African American","No","Healthy Donor ","Donor"]
["Donor7","Alveolar Macrophages",54,"M","Caucasian","No","Healthy Donor ","Donor"]
["Donor8","Alveolar Macrophages",43,"M","Hispanic","No","Healthy Donor ","Donor"]
["Donor9","Alveolar Macrophages",21,"M","Caucasian","No","Healthy Donor ","Donor"]
["Donor10","Alveolar Macrophages",43,"F","Caucasian","Yes","Healthy Donor ","Donor"]
["Donor11","Alveolar Macrophages",50,"M","Hispanic","Yes","Healthy Donor ","Donor"]
["Donor12","Alveolar Macrophages",51,"M","African American","Yes","Healthy Donor ","Donor"]
["Donor13","Alveolar Macrophages",26,"F","African American","Yes","Healthy Donor ","Donor"]
["Donor14","Alveolar Macrophages",40,"M","Hispanic","Yes","Healthy Donor ","Donor"]
["IPF1","Whole Lung Tissue",56,"F","N/A","No","Fibrosis HP","IPF"]
["IPF2","Whole Lung Tissue",65,"M","N/A","No","Fibrosis IPF","IPF"]
["IPF3","Whole Lung Tissue",67,"M","N/A","Yes","Fibrosis IPF","IPF"]
["IPF4","Whole Lung Tissue",55,"F","N/A","No","Fibrosis Myositis ILD","IPF"]
["IPF5","Whole Lung Tissue",60,"M","N/A","Yes","Fibrosis Myositis ILD","IPF"]
["IPF6","Whole Lung Tissue",42,"M","N/A","No","Fibrosis SSc ILD","IPF"]
["IPF7","Whole Lung Tissue",52,"M","N/A","Yes","Fibrosis SSc ILD","IPF"]
["IPF8","Whole Lung Tissue",52,"F","N/A","No","Fibrosis SSc ILD","IPF"]
["IPF1","Alveolar Type II Cells",56,"F","N/A","No","Fibrosis HP","IPF"]
["IPF2","Alveolar Type II Cells",65,"M","N/A","No","Fibrosis IPF","IPF"]
["IPF3","Alveolar Type II Cells",67,"M","N/A","Yes","Fibrosis IPF","IPF"]
["IPF4","Alveolar Type II Cells",55,"F","N/A","No","Fibrosis Myositis ILD","IPF"]
["IPF5","Alveolar Type II Cells",60,"M","N/A","Yes","Fibrosis Myositis ILD","IPF"]
["IPF6","Alveolar Type II Cells",42,"M","N/A","No","Fibrosis SSc ILD","IPF"]
["IPF7","Alveolar Type II Cells",52,"M","N/A","Yes","Fibrosis SSc ILD","IPF"]
["IPF8","Alveolar Type II Cells",52,"F","N/A","No","Fibrosis SSc ILD","IPF"]
["IPF1","Alveolar Macrophages",56,"F","N/A","No","Fibrosis HP","IPF"]
["IPF2","Alveolar Macrophages",65,"M","N/A","No","Fibrosis IPF","IPF"]
["IPF3","Alveolar Macrophages",67,"M","N/A","Yes","Fibrosis IPF","IPF"]
["IPF4","Alveolar Macrophages",55,"F","N/A","No","Fibrosis Myositis ILD","IPF"]
["IPF5","Alveolar Macrophages",60,"M","N/A","Yes","Fibrosis Myositis ILD","IPF"]
["IPF6","Alveolar Macrophages",42,"M","N/A","No","Fibrosis SSc ILD","IPF"]
["IPF7","Alveolar Macrophages",52,"M","N/A","Yes","Fibrosis SSc ILD","IPF"]
["IPF8","Alveolar Macrophages",52,"F","N/A","No","Fibrosis SSc ILD","IPF"]
[]
[]
["Single cell RNA-seq  samples "]
["Sample ID","Histological type","Age",null,"Sex","Race","Smoking history","Phenotype","Analyzed phenotye"]
["DONOR1ssRNA","Whole lung",63,"DONOR_1","F","African American","No","Healthy Donor ","Donor "]
["DONOR2ssRNA","Whole lung",55,"DONOR_2","M","Asian","Yes","Healthy Donor ","Donor "]
["DONOR3ssRNA","Whole lung",29,"DONOR_3","F","African American","No","Healthy Donor ","Donor "]
["DONOR4ssRNA","Whole lung",57,"DONOR_4","F","African American","No","Healthy Donor ","Donor "]
["DONOR5ssRNA","Whole lung",49,"DONOR_5","F","Caucasian","Yes","Healthy Donor ","Donor "]
["DONOR6ssRNA","Whole lung",22,"DONOR_6","F","African American","No","Healthy Donor ","Donor "]
["DONOR7ssRNA","Whole lung",47,"DONOR_7","F","Caucasian","Yes","Healthy Donor ","Donor "]
["DONOR8ssRNA","Whole lung",21,"DONOR_8","M","African American","No","Healthy Donor ","Donor "]
["IPF1ssRNA","Whole lung",71,"IPF_1","F","N/A","Yes","Fibrosis IPF","IPF"]
["IPF2ssRNA","Whole lung",66,"IPF_2","M","N/A","Yes","Fibrosis IPF","IPF"]
["IPF3ssRNA","Whole lung",60,"IPF_3","M","N/A","No","Fibrosis IPF","IPF"]
["IPF4ssRNA","Whole lung",68,"IPF_4","M","N/A","Yes","Fibrosis IPF","IPF"]
["IPF5ssRNA","Whole lung",55,"HP_1","F","N/A","No","Fibrosis HP","IPF"]
["IPF6ssRNA","Whole lung",37,"Myositis_1","F","N/A","No","Fibrosis Myositis ILD","IPF"]
["IPF7ssRNA","Whole lung",39,"Ssc_1","F","N/A","No","Fibrosis SSc ILD","IPF"]
["IPF8ssRNA","Whole lung",53,"Ssc_2","F","N/A","No","Fibrosis SSc ILD","IPF"]