Target factor	source	cell-line	method
SLTM	ENCODE: ENCSR000SSH	K562	eCLIP
PHF6	ENCODE: ENCSR001KKZ	K562	eCLIP
NOLC1	ENCODE: ENCSR001VAC	K562	eCLIP
EEF2	ENCODE: ENCSR004VIR	K562	eCLIP
FAM120A	ENCODE: ENCSR006OEQ	K562	eCLIP
DDX43	ENCODE: ENCSR008MQM	K562	eCLIP
EXOSC5	ENCODE: ENCSR013CTQ	K562	eCLIP
NCBP2	ENCODE: ENCSR018RVZ	HepG2	eCLIP
AQR	ENCODE: ENCSR018WPY	HepG2	eCLIP
FKBP4	ENCODE: ENCSR018ZUE	HepG2	eCLIP
LSM11	ENCODE: ENCSR022BVV	K562	eCLIP
EIF3G	ENCODE: ENCSR023PKW	K562	eCLIP
FASTKD2	ENCODE: ENCSR023UHL	HepG2	eCLIP
WRN	ENCODE: ENCSR038JME	K562	eCLIP
DDX21	ENCODE: ENCSR040QLV	K562	eCLIP
EIF3D	ENCODE: ENCSR041NUV	HepG2	eCLIP
CPEB4	ENCODE: ENCSR046JHH	K562	eCLIP
SDAD1	ENCODE: ENCSR050BDZ	HepG2	eCLIP
TIA1	ENCODE: ENCSR057DWB	K562	eCLIP
SBDS	ENCODE: ENCSR059CWF	K562	eCLIP
SND1	ENCODE: ENCSR061EVO	HepG2	eCLIP
DGCR8	ENCODE: ENCSR061SZV	HepG2	eCLIP
IGF2BP2	ENCODE: ENCSR062NNB	K562	eCLIP
FUS	ENCODE: ENCSR069EVH	K562	eCLIP
NSUN2	ENCODE: ENCSR081JYH	K562	eCLIP
WDR43	ENCODE: ENCSR085JPB	HepG2	eCLIP
ABCF1	ENCODE: ENCSR089BXO	K562	eCLIP
ELAVL1	ENCODE: ENCSR090LNQ	K562	eCLIP
PPIG	ENCODE: ENCSR097NEE	HepG2	eCLIP
RPS6	ENCODE: ENCSR100ARZ	K562	eCLIP
RPS3	ENCODE: ENCSR120EAR	K562	eCLIP
SERBP1	ENCODE: ENCSR121GQH	K562	eCLIP
PRPF8	ENCODE: ENCSR121NVA	HepG2	eCLIP
SND1	ENCODE: ENCSR128VXC	K562	eCLIP
SF3B1	ENCODE: ENCSR133QEA	K562	eCLIP
LSM11	ENCODE: ENCSR135VMS	HepG2	eCLIP
DDX6	ENCODE: ENCSR141OIM	HepG2	eCLIP
DDX51	ENCODE: ENCSR145NLR	K562	eCLIP
RNF187	ENCODE: ENCSR153STI	K562	eCLIP
DDX52	ENCODE: ENCSR154CSN	K562	eCLIP
HNRNPA1	ENCODE: ENCSR154HRN	K562	eCLIP
MORC2	ENCODE: ENCSR168VUE	K562	eCLIP
AKAP1	ENCODE: ENCSR177QQY	K562	eCLIP
RYBP	ENCODE: ENCSR179MPN	K562	eCLIP
ZC3H8	ENCODE: ENCSR181NRW	K562	eCLIP
TARDBP	ENCODE: ENCSR187VEQ	HepG2	eCLIP
NOLC1	ENCODE: ENCSR194HZU	HepG2	eCLIP
RBM15	ENCODE: ENCSR196INN	K562	eCLIP
PPIL4	ENCODE: ENCSR197INS	K562	eCLIP
MTPAP	ENCODE: ENCSR200DKE	K562	eCLIP
U2AF2	ENCODE: ENCSR202BFN	HepG2	eCLIP
WDR3	ENCODE: ENCSR202HKN	K562	eCLIP
AKAP8L	ENCODE: ENCSR206RXT	K562	eCLIP
DDX59	ENCODE: ENCSR214BZA	HepG2	eCLIP
FXR2	ENCODE: ENCSR224QWC	K562	eCLIP
GEMIN5	ENCODE: ENCSR238CLX	K562	eCLIP
HNRNPU	ENCODE: ENCSR240MVJ	HepG2	eCLIP
FXR1	ENCODE: ENCSR248TXP	K562	eCLIP
HNRNPC	ENCODE: ENCSR249ROI	K562	eCLIP
PCBP1	ENCODE: ENCSR256CHX	HepG2	eCLIP
APEX1	ENCODE: ENCSR256NCI	K562	eCLIP
XRCC6	ENCODE: ENCSR258QKO	K562	eCLIP
GTF2F1	ENCODE: ENCSR265ZIS	HepG2	eCLIP
SF3B4	ENCODE: ENCSR267OLV	K562	eCLIP
HNRNPM	ENCODE: ENCSR267UCX	HepG2	eCLIP
HNRNPK	ENCODE: ENCSR268ETU	K562	eCLIP
RPS11	ENCODE: ENCSR269AJF	K562	eCLIP
NKRF	ENCODE: ENCSR277DEO	HepG2	eCLIP
SF3B4	ENCODE: ENCSR279UJF	HepG2	eCLIP
MATR3	ENCODE: ENCSR290VLT	HepG2	eCLIP
PUS1	ENCODE: ENCSR291XPT	K562	eCLIP
DDX1	ENCODE: ENCSR293FWY	K562	eCLIP
RBM22	ENCODE: ENCSR295OKT	K562	eCLIP
DKC1	ENCODE: ENCSR301TFY	HepG2	eCLIP
GNL3	ENCODE: ENCSR301UQM	K562	eCLIP
METAP2	ENCODE: ENCSR303OQD	K562	eCLIP
EIF4G2	ENCODE: ENCSR307YIW	K562	eCLIP
PUM1	ENCODE: ENCSR308YNT	K562	eCLIP
TRA2A	ENCODE: ENCSR314UMJ	HepG2	eCLIP
SRSF1	ENCODE: ENCSR321PWZ	K562	eCLIP
TIAL1	ENCODE: ENCSR322HHA	HepG2	eCLIP
U2AF1	ENCODE: ENCSR328LLU	HepG2	eCLIP
SF3A3	ENCODE: ENCSR331MIC	HepG2	eCLIP
FMR1	ENCODE: ENCSR331VNX	K562	eCLIP
SAFB	ENCODE: ENCSR337XGI	HepG2	eCLIP
PCBP2	ENCODE: ENCSR339FUY	HepG2	eCLIP
WDR43	ENCODE: ENCSR349CMI	K562	eCLIP
UCHL5	ENCODE: ENCSR349KMG	K562	eCLIP
SLTM	ENCODE: ENCSR351PVI	HepG2	eCLIP
SSB	ENCODE: ENCSR352STY	HepG2	eCLIP
SSB	ENCODE: ENCSR356MSW	K562	eCLIP
AKAP1	ENCODE: ENCSR356ZMO	HepG2	eCLIP
NIP7	ENCODE: ENCSR361OCV	HepG2	eCLIP
TRA2A	ENCODE: ENCSR365NVO	K562	eCLIP
KHSRP	ENCODE: ENCSR366DGX	HepG2	eCLIP
QKI	ENCODE: ENCSR366YOG	K562	eCLIP
SMNDC1	ENCODE: ENCSR373ODC	HepG2	eCLIP
NSUN2	ENCODE: ENCSR379GZS	HepG2	eCLIP
SRSF9	ENCODE: ENCSR381VNR	K562	eCLIP
PTBP1	ENCODE: ENCSR384KAN	HepG2	eCLIP
CSTF2	ENCODE: ENCSR384MWO	HepG2	eCLIP
EIF4E	ENCODE: ENCSR391BBA	K562	eCLIP
SUB1	ENCODE: ENCSR406OOZ	HepG2	eCLIP
HNRNPM	ENCODE: ENCSR412NOW	K562	eCLIP
SRSF1	ENCODE: ENCSR432XUP	K562	eCLIP
KHSRP	ENCODE: ENCSR438GZQ	K562	eCLIP
ILF3	ENCODE: ENCSR438KWZ	K562	eCLIP
ELAC2	ENCODE: ENCSR440MSY	K562	eCLIP
MATR3	ENCODE: ENCSR440SUX	K562	eCLIP
GARS	ENCODE: ENCSR448GXJ	K562	eCLIP
UPF1	ENCODE: ENCSR456ASB	K562	eCLIP
RBM22	ENCODE: ENCSR456JJQ	HepG2	eCLIP
LARP7	ENCODE: ENCSR456KXI	K562	eCLIP
FUS	ENCODE: ENCSR464OSH	HepG2	eCLIP
SRSF7	ENCODE: ENCSR468FSW	K562	eCLIP
SLBP	ENCODE: ENCSR483NOP	K562	eCLIP
SAFB	ENCODE: ENCSR484LAB	K562	eCLIP
NCBP2	ENCODE: ENCSR484LTQ	K562	eCLIP
BCCIP	ENCODE: ENCSR485QCG	HepG2	eCLIP
FUBP3	ENCODE: ENCSR486YGP	HepG2	eCLIP
UTP18	ENCODE: ENCSR488JKQ	HepG2	eCLIP
RBM5	ENCODE: ENCSR489ABS	HepG2	eCLIP
UCHL5	ENCODE: ENCSR490IEE	HepG2	eCLIP
MBNL1	ENCODE: ENCSR497XZI	K562	eCLIP
METTL1	ENCODE: ENCSR498DQS	K562	eCLIP
TBRG4	ENCODE: ENCSR506OTC	K562	eCLIP
SUGP2	ENCODE: ENCSR506UPY	HepG2	eCLIP
SRSF7	ENCODE: ENCSR513NDD	HepG2	eCLIP
HNRNPU	ENCODE: ENCSR520BZQ	K562	eCLIP
EXOSC10	ENCODE: ENCSR521GON	K562	eCLIP
EFTUD2	ENCODE: ENCSR527DXF	HepG2	eCLIP
YBX3	ENCODE: ENCSR529FKI	K562	eCLIP
DHX30	ENCODE: ENCSR529GSJ	K562	eCLIP
CPSF6	ENCODE: ENCSR532VUB	K562	eCLIP
PRPF8	ENCODE: ENCSR534YOI	K562	eCLIP
UPF1	ENCODE: ENCSR539BEV	HepG2	eCLIP
TROVE2	ENCODE: ENCSR539ZTS	K562	eCLIP
AGGF1	ENCODE: ENCSR543TPH	HepG2	eCLIP
HNRNPC	ENCODE: ENCSR550DVK	HepG2	eCLIP
FMR1	ENCODE: ENCSR554UVB	K562	eCLIP
DHX30	ENCODE: ENCSR565DGW	HepG2	eCLIP
TAF15	ENCODE: ENCSR568DZW	K562	eCLIP
QKI	ENCODE: ENCSR570WLM	HepG2	eCLIP
XRCC6	ENCODE: ENCSR571ROL	HepG2	eCLIP
HNRNPUL1	ENCODE: ENCSR571VHI	K562	eCLIP
DDX42	ENCODE: ENCSR576SHT	K562	eCLIP
SUPV3L1	ENCODE: ENCSR580MFX	HepG2	eCLIP
SUPV3L1	ENCODE: ENCSR580OFI	K562	eCLIP
TARDBP	ENCODE: ENCSR584TCR	K562	eCLIP
ZNF800	ENCODE: ENCSR586DGV	K562	eCLIP
HLTF	ENCODE: ENCSR589YHM	K562	eCLIP
AQR	ENCODE: ENCSR606BPV	K562	eCLIP
TIA1	ENCODE: ENCSR623VEQ	HepG2	eCLIP
KHDRBS1	ENCODE: ENCSR628IDK	K562	eCLIP
DDX47	ENCODE: ENCSR631HUN	K562	eCLIP
GPKOW	ENCODE: ENCSR647CLF	K562	eCLIP
HLTF	ENCODE: ENCSR647HOX	HepG2	eCLIP
DDX3X	ENCODE: ENCSR648LAH	HepG2	eCLIP
DROSHA	ENCODE: ENCSR653HQC	K562	eCLIP
XRN2	ENCODE: ENCSR655NZA	HepG2	eCLIP
XRN2	ENCODE: ENCSR657TZB	K562	eCLIP
ZNF622	ENCODE: ENCSR657TZZ	K562	eCLIP
SMNDC1	ENCODE: ENCSR658IQB	K562	eCLIP
PUM2	ENCODE: ENCSR661ICQ	K562	eCLIP
ZRANB2	ENCODE: ENCSR663NRA	K562	eCLIP
BUD13	ENCODE: ENCSR663WES	K562	eCLIP
GRSF1	ENCODE: ENCSR668MJX	HepG2	eCLIP
ZNF800	ENCODE: ENCSR685AUR	HepG2	eCLIP
EXOSC5	ENCODE: ENCSR693JWP	HepG2	eCLIP
ZC3H11A	ENCODE: ENCSR712IAG	K562	eCLIP
TARDBP	ENCODE: ENCSR720BJU	K562	eCLIP
G3BP1	ENCODE: ENCSR721HPX	HepG2	eCLIP
HNRNPL	ENCODE: ENCSR724RDN	HepG2	eCLIP
AGGF1	ENCODE: ENCSR725ARB	K562	eCLIP
UTP3	ENCODE: ENCSR734ZHL	K562	eCLIP
YBX3	ENCODE: ENCSR735HOK	HepG2	eCLIP
GTF2F1	ENCODE: ENCSR736AAG	K562	eCLIP
APOBEC3C	ENCODE: ENCSR739VVT	K562	eCLIP
IGF2BP1	ENCODE: ENCSR744GEU	HepG2	eCLIP
ADAT1	ENCODE: ENCSR750YOM	K562	eCLIP
RBM15	ENCODE: ENCSR754NDA	HepG2	eCLIP
HNRNPUL1	ENCODE: ENCSR755TJC	HepG2	eCLIP
RBFOX2	ENCODE: ENCSR756CKJ	K562	eCLIP
RPS3	ENCODE: ENCSR766FAC	HepG2	eCLIP
FXR2	ENCODE: ENCSR767OEY	K562	eCLIP
HNRNPA1	ENCODE: ENCSR769UEW	HepG2	eCLIP
SRSF9	ENCODE: ENCSR773KRC	HepG2	eCLIP
FXR1	ENCODE: ENCSR774RFN	K562	eCLIP
ILF3	ENCODE: ENCSR786TSC	HepG2	eCLIP
HNRNPL	ENCODE: ENCSR795CAI	K562	eCLIP
LARP4	ENCODE: ENCSR805SRN	HepG2	eCLIP
CDC40	ENCODE: ENCSR815VVI	HepG2	eCLIP
AATF	ENCODE: ENCSR819XBT	K562	eCLIP
NOL12	ENCODE: ENCSR820DQJ	HepG2	eCLIP
PABPN1	ENCODE: ENCSR820UYE	HepG2	eCLIP
POLR2G	ENCODE: ENCSR820WHR	HepG2	eCLIP
AARS	ENCODE: ENCSR825SVO	K562	eCLIP
HNRNPK	ENCODE: ENCSR828ZID	HepG2	eCLIP
BUD13	ENCODE: ENCSR830BSQ	HepG2	eCLIP
DROSHA	ENCODE: ENCSR834YLD	HepG2	eCLIP
CSTF2T	ENCODE: ENCSR840DRD	K562	eCLIP
TAF15	ENCODE: ENCSR841EQA	HepG2	eCLIP
EFTUD2	ENCODE: ENCSR844RVX	K562	eCLIP
DDX55	ENCODE: ENCSR845VGB	HepG2	eCLIP
LIN28B	ENCODE: ENCSR861GYE	HepG2	eCLIP
NONO	ENCODE: ENCSR861PAR	K562	eCLIP
U2AF1	ENCODE: ENCSR862QCH	K562	eCLIP
NPM1	ENCODE: ENCSR867DSZ	K562	eCLIP
YWHAG	ENCODE: ENCSR867ZVK	K562	eCLIP
BCLAF1	ENCODE: ENCSR876EYA	HepG2	eCLIP
FASTKD2	ENCODE: ENCSR887FHF	K562	eCLIP
EWSR1	ENCODE: ENCSR887LPK	K562	eCLIP
LARP4	ENCODE: ENCSR888YTT	K562	eCLIP
NIPBL	ENCODE: ENCSR891RIC	K562	eCLIP
DDX6	ENCODE: ENCSR893EFU	K562	eCLIP
GRWD1	ENCODE: ENCSR893NWB	HepG2	eCLIP
U2AF2	ENCODE: ENCSR893RAV	K562	eCLIP
FTO	ENCODE: ENCSR903PRV	HepG2	eCLIP
SDAD1	ENCODE: ENCSR906ZJF	K562	eCLIP
ZC3H11A	ENCODE: ENCSR907GUB	HepG2	eCLIP
TBRG4	ENCODE: ENCSR916SRV	HepG2	eCLIP
EIF3H	ENCODE: ENCSR916XIV	HepG2	eCLIP
CSTF2T	ENCODE: ENCSR919HSE	HepG2	eCLIP
XPO5	ENCODE: ENCSR921SXC	HepG2	eCLIP
PCBP1	ENCODE: ENCSR922WJV	K562	eCLIP
DDX55	ENCODE: ENCSR923NKN	K562	eCLIP
DDX3X	ENCODE: ENCSR930BZL	K562	eCLIP
RPS10	ENCODE: ENCSR937RSF	K562	eCLIP
SAFB2	ENCODE: ENCSR943MHU	K562	eCLIP
DGCR8	ENCODE: ENCSR947JVR	K562	eCLIP
HNRNPK	ENCODE: ENCSR953ZOA	K562	eCLIP
PABPC4	ENCODE: ENCSR958FKZ	K562	eCLIP
LARP7	ENCODE: ENCSR961OKA	HepG2	eCLIP
UTP18	ENCODE: ENCSR964VOX	K562	eCLIP
SFPQ	ENCODE: ENCSR965DLL	HepG2	eCLIP
DDX52	ENCODE: ENCSR970FEW	HepG2	eCLIP
LIN28B	ENCODE: ENCSR970NKP	K562	eCLIP
FXR2	ENCODE: ENCSR973HOJ	HepG2	eCLIP
IGF2BP1	ENCODE: ENCSR975KIR	K562	eCLIP
PRPF4	ENCODE: ENCSR977OXG	HepG2	eCLIP
STAU2	ENCODE: ENCSR979EWD	HepG2	eCLIP
PTBP1	ENCODE: ENCSR981WKN	K562	eCLIP
RBFOX2	ENCODE: ENCSR987FTF	HepG2	eCLIP
FAM120A	ENCODE: ENCSR987NYS	HepG2	eCLIP
FTO	ENCODE: ENCSR989SMC	K562	eCLIP
SRSF1	ENCODE: ENCSR989VIY	HepG2	eCLIP
TROVE2	ENCODE: ENCSR993FMY	HepG2	eCLIP
IGF2BP3	ENCODE: ENCSR993OLA	HepG2	eCLIP
DDX24	ENCODE: ENCSR999WKT	K562	eCLIP
GRWD1	ENCODE: ENCSR999YGP	K562	eCLIP
PHC1	GEO:GSE103233	HEK293T	PAR-CLIP
RBMX	GEO:GSE114311	HEK293T	PAR-CLIP
HDLBP	GEO:GSE148262	HEK293T	PAR-CLIP
HIWI1	GEO:GSE188383	THP-1	PAR-CLIP
SFB, BARD1	GEO:GSE207338	HEK293T	PAR-CLIP
SRSF2	GEO:GSE207643	K562	PAR-CLIP
CFL1, METTL3, YTHDC2	GEO:GSE211585	PANC-1	PAR-CLIP
YB-1	GEO:GSE249896	HEK293T	PAR-CLIP
RAD51AP1	GEO:GSE252475	HEK293T	PAR-CLIP
