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["Supplementary Table 1: Respiratory virome percentage of genome coverage. Abbreviations: RSV-A:  Respiratory syncytial virus subtype A, RSV-B: RSV-A:  Respiratory syncytial virus subtype B, CoV: Coronavirus, HRV: Human rhinovirus, EV: Enterovirus,  HPeV: Human parechovirus, HMPV: Human metapneumovirus, HAdV: Human adenoviruses, ReMV: Rehmannia mosaic virus, BPEV: Bell pepper endornavirus, TMV: Tobacco mosaic virus, ToMV: Tomato mosaic virus, PV: Potato virus, TVCV: Turnip vein-clearing virus, HAdV-C : Human mastadenovirus,ToBRFV: Tomato brown rugose fruit virus, PepMV: Pepino mosaic virus,GLRaV: Grapevine leafroll-associated virus, PvEV: Phaseolus vulgaris alphaendornavirus"]
["SampleGroups","RSV-A","RSV-B","CoV-NL63","CoV-OC43","CoV-229E","HRV-A","HRV-B","HRV-C","EV-D68","HPeV","HMPV","Influenza","Rotavirus","Bocavirus","HAdV-C","ReMV-NcaS","BPEV","TMV","ToMV","PV","TVCV","ToBRFV","PepMV","GLRaV","PvEV","Moraxella.phage","Propionibacterium.phage","Lactococcus.lactis.phage","Lactococcus.phage","Streptococcus.phage","Staphylococcus.phage"]
["HC",3.69859,98.3054,46.0748,0,0,44.5836,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.40679,0,0,0,0,0]
["HC",94.6656,46.8374,38.3766,0,0,0,0,0,0,0,0,0,0,0,0,99.2306,29.6374,0,0,0,0,0,0,0,0,28.7216,0,0,0,0,0]
["HC",98.962,5.26765,43.6202,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0]
["HC",6.03731,24.1445,26.988,0,0,36.6373,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.07925,0,0,0,0,0]
["HC",36.5983,57.8194,98.9705,0,0,0,0,92.5155,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.54538,0,0,0,0,0]
["HC",67.9871,0,25.6835,0,0,0,0,99.7186,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.2782,0,0,0,0,0]
["HC",0,0,100,0,0,0,0,0,0,0,0,0,0,0,0,0,0,94.355,0,0,0,0,0,0,0,2.40691,0,0,0,0,0]
["HC",25.5945,12.4335,37.8035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,46.3472,0,0,74.283,0,0,0,0,0,0,0,0,0,0]
["HC",98.1211,0,65.1663,0,0,51.6158,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.99322,0,0,0,0,0]
["HC",41.6634,0,60.4285,0,0,0,0,0,0,0,0,0,80.7692,0,0,0,0,0,0,0,0,0,0,0,0,8.51021,0,0,0,0,0]
["HC",95.4014,76.6108,0,0,0,36.7491,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.87382,0,0,0,0,0]
["HC",99.2117,87.9212,0,0,0,66.2489,0,0,10.9671,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.87564,0,0,0,0,0]
["HC",99.4547,86.8703,0,0,0,0,0,0,12.3039,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0]
["HC",98.5087,62.1609,0,0,0,0,0,0,12.1811,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,24.9893,0,0,0,0,0,0]
["HC",97.8452,8.40722,0,0,0,0,0,0,0,0,0,99.9136,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.19633]
["HC",62.3243,55.1658,77.0561,0,0,0,0,0,14.4387,0,0,0,0,0,0,0,0,42.8099,0,0,0,34.012,0,0,0,0,0,0,0,0,0]
["HC",78.8661,0,0,99.9251,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.48402,0,0,0,0,0]
["HC",16.9886,0,0,0,99.9303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.61927,0,0,0,0,0]
["HC",65.5433,16.9787,0,0,0,0,0,0,64.4039,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,16.6277,0,0,0,0,0]
["RSV mild",99.6124,9.33333,0,0,0,17.5374,0,0,0,0,0,0,0,0,2.50342,0,37.9753,0,0,0,0,0,0,0,0,3.73899,35.1741,6.17141,0,0,0]
["RSV mild",95.2174,99.8949,12.0526,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0]
["RSV mild",99.5927,17.4319,0,0,0,0,99.0438,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.24,0,0,0,0,0]
["RSV mild",99.7372,31.2512,0,0,0,0,0,0,0,0,36.6891,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0]
["RSV mild",99.1854,7.58621,0,0,0,99.4824,0,0,0,0,0,0,0,0,0,0,0,0,96.6003,31.2198,0,0,0,0,0,6.70909,0,0,0,0,0]
["RSV mild",98.2263,55.4483,0,0,0,99.2313,0,0,14.2682,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.83402,0,0,0,0,0]
["RSV mild",34.2728,99.9803,0,0,0,0,0,0,15.6595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.63056,0,0,0,0,0]
["RSV mild",99.5927,12.5714,0,0,0,0,0,0,30.1732,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.53704,0,0,1.10523,0]
["RSV mild",98.7649,10.7258,0,0,0,33.4642,0,0,13.9135,0,0,80.44,0,0,0,0,0,0,0,0,0,0,0,0,0,2.03638,0,0,0,0.863655,0]
["RSV mild",99.2511,37.3399,0,0,0,99.3142,0,0,12.4812,0,0,0,0,96.7352,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0]
["RSV mild",86.1188,64.8342,0,0,0,0,87.3544,0,0,0,0,0,0,0,0,0,0,0,0,42.2107,0,0,0,0,0,0,20.9788,0,0,0,0]
["RSV mild",97.773,99.8686,0,0,0,0,44.5646,0,0,98.7602,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0]
["RSV mild",99.6912,29.9376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0]
["RSV mild",98.1014,99.9737,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.8688,0,0,0,0,0]
["RSV mild",99.5664,4.66338,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.86055,0,0,0,0,0]
["RSV mild",99.8161,98.6798,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0]
["RSV severe",90.2575,8.289,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0]
["RSV severe",97.8452,99.8752,0,0,0,100,0,0,13.8317,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.55357,0,0,0,0,0]
["RSV severe",99.4942,43.6322,0,0,0,0,0,0,12.3039,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.9812,0,0,0,0,0]
["RSV severe",96.216,79.7767,0,0,0,100,0,0,14.4182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,18.2171,0,0,0,0,0]
["RSV severe",98.0292,18.5484,0,0,0,0,94.4491,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0]
["RSV severe",99.7963,58.9557,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0]
["RSV severe",99.7635,35.8358,0,0,0,0,0,0,12.3039,18.738,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,20.7023,0,13.2346,0.945421,0]
["RSV severe",99.8358,65.202,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.7923,0]
["RSV severe",99.5073,25.5304,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.82537,0,0,0,0,0]
["RSV severe",98.7058,62.8834,31.7249,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.64488,0,0,0,0,0]
["RSV severe",95.5328,97.2808,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0]
["RSV severe",99.5598,2.65353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0]
["RSV severe",97.7138,99.9475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0]
["RSV severe",99.5073,37.1757,0,0,0,0,0,0,0,76.1653,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.549,0,0,0,2.06615,0]
["RSV severe",99.3825,99.9869,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,89.3041,0,0,0,0,0,0,0,0,0,0,0,0,0]
["RSV severe",99.0606,99.8752,0,0,0,75.4306,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.95654,0,0,0,0,0]
["RSV severe",99.5073,82.1806,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,56.3904,0,0,0,0,0,0,0,0,0]
["RSV severe",99.0671,99.8424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0]
["RSV severe",98.5679,67.908,0,0,0,32.6053,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,93.6796,49.5647,22.2888,0,5.61829,16.6121,0,6.35784,0,0]
["RSV severe",99.619,34.3645,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0]
["RSV severe",96.689,100,0,0,0,100,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0]
["RSV severe",98.535,99.9212,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0]
["RSV severe",97.2605,99.9934,0,0,0,99.832,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.50496,0,0,0,0,0]