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["Table S3 Analysis of pathways involving upregulated genes after inoculation with Rhizoctonia solani in Shennong 9819"]
["Time","Pathway_description","P-value","DEG","Enrichment_Factor"]
["SS12h","Pentose phosphate pathway",{"v":0.004468211577494,"d":"4.47E-03"},7,3.344295]
[null,"Nitrogen metabolism",{"v":0.000165391977066,"d":"1.65E-04"},7,5.704975]
[null,"Alanine, aspartate and glutamate metabolism",{"v":0.005698579449677,"d":"5.70E-03"},6,3.614332]
[null,"Ribosome",{"v":0.007566659278167,"d":"7.57E-03"},23,1.699539]
[null,"Cysteine and methionine metabolism",{"v":0.020019510448639,"d":"2.00E-02"},9,2.206981]
[null,"Tropane, piperidine and pyridine alkaloid biosynthesis",{"v":0.038075013474795,"d":"3.81E-02"},3,3.958554]
[null,"Phenylalanine metabolism",{"v":0.018293933067928,"d":"1.83E-02"},5,3.222079]
[null,"Plant hormone signal transduction",{"v":0.024671965205319,"d":"2.47E-02"},14,1.779533]
[null,"Sulfur metabolism",{"v":0.046532405474442,"d":"4.65E-02"},4,2.916829]
[null,"Purine metabolism",{"v":0.017945180192635,"d":"1.79E-02"},11,2.045696]
["SS24h","Tyrosine metabolism",{"v":0.017359593407423,"d":"1.74E-02"},2,9.7586957]
[null,"Diterpenoid biosynthesis",{"v":7.32e-09,"d":"7.32E-09"},6,36.3972973]
[null,"Nitrogen metabolism",{"v":0.009714634824675,"d":"9.71E-03"},2,13.2029412]
[null,"Isoquinoline alkaloid biosynthesis",{"v":0.007124845761787,"d":"7.12E-03"},2,15.4793103]
["SS36h","Caffeine metabolism",{"v":0.036204066267753,"d":"3.62E-02"},1,27.371951]
[null,"Isoquinoline alkaloid biosynthesis",{"v":0.00173513413439,"d":"1.74E-03"},4,7.550883]
[null,"Tropane, piperidine and pyridine alkaloid biosynthesis",{"v":0.006163064752599,"d":"6.16E-03"},3,7.820557]
[null,"Tyrosine metabolism",{"v":0.0094276926792,"d":"9.43E-03"},4,4.760339]
[null,"Glycine, serine and threonine metabolism",{"v":0.007164064588453,"d":"7.16E-03"},5,4.085366]
[null,"Phenylalanine metabolism",{"v":0.007430194645272,"d":"7.43E-03"},4,5.092456]
[null,"Plant hormone signal transduction",{"v":0.005879571028167,"d":"5.88E-03"},10,2.511188]
[null,"beta-Alanine metabolism",{"v":0.038076099607425,"d":"3.81E-02"},3,4.005651]
[null,"Nitrogen metabolism",{"v":0.000330258056053,"d":"3.30E-04"},5,8.050574]
["SS48h","Diterpenoid biosynthesis",{"v":4.44e-11,"d":"4.44E-11"},13,10.877353]
[null,"Cysteine and methionine metabolism",{"v":0.028741554176194,"d":"2.87E-02"},8,2.191761]
[null,"Zeatin biosynthesis",{"v":0.013572641804699,"d":"1.36E-02"},3,5.804741]
[null,"Ribosome",{"v":0.03136022213299,"d":"3.14E-02"},19,1.56857]
[null,"Glycolysis / Gluconeogenesis",{"v":0.029520191590423,"d":"2.95E-02"},9,2.063908]
[null,"Phenylpropanoid biosynthesis",{"v":0.000254386015738,"d":"2.54E-04"},14,2.928518]
[null,"Biosynthesis of unsaturated fatty acids",{"v":0.041953367431684,"d":"4.20E-02"},4,3.020353]
[null,"Phenylalanine, tyrosine and tryptophan biosynthesis",{"v":9e-05,"d":"9.00E-05"},8,5.384108]
[null,"alpha-Linolenic acid metabolism",{"v":0.000514232100883,"d":"5.14E-04"},7,4.815785]
[null,"Stilbenoid, diarylheptanoid and gingerol biosynthesis",{"v":0.018868038776383,"d":"1.89E-02"},3,5.15977]
[null,"Arginine and proline metabolism",{"v":0.027137572521865,"d":"2.71E-02"},5,2.920625]
[null,"Biosynthesis of amino acids",{"v":0.000433629193535,"d":"4.34E-04"},18,2.391653]
["SS72h","Citrate cycle (TCA cycle)",{"v":0.016404989523766,"d":"1.64E-02"},6,2.898934]
[null,"Phenylalanine, tyrosine and tryptophan biosynthesis",{"v":0.024473240762583,"d":"2.45E-02"},5,2.993465]
[null,"Sulfur metabolism",{"v":0.047418865581623,"d":"4.74E-02"},4,2.898934]
[null,"Fatty acid biosynthesis",{"v":0.001185081952081,"d":"1.19E-03"},7,4.190851]
[null,"Carbon metabolism",{"v":0.000392607713422,"d":"3.93E-04"},21,2.224375]
[null,"Carbon fixation in photosynthetic organisms",{"v":0.025165224131246,"d":"2.52E-02"},7,2.409739]
[null,"Fatty acid metabolism",{"v":0.006349430295689,"d":"6.35E-03"},8,2.861286]
[null,"Biosynthesis of unsaturated fatty acids",{"v":0.000579834237914,"d":"5.80E-04"},7,4.70193]
[null,"Biotin metabolism",{"v":0.000946243304782,"d":"9.46E-04"},5,6.259063]
[null,"Biosynthesis of amino acids",{"v":2.71e-05,"d":"2.71E-05"},22,2.600332]
[null,"Glutathione metabolism",{"v":0.001182104914769,"d":"1.18E-03"},10,3.129532]
[null,"Diterpenoid biosynthesis",{"v":3.9e-08,"d":"3.90E-08"},11,8.187531]
[null,"Zeatin biosynthesis",{"v":0.018580624481289,"d":"1.86E-02"},3,5.163727]