Overview

Brought to you by YData

Dataset statistics

Number of variables	7
Number of observations	7496
Missing cells	5930
Missing cells (%)	11.3%
Total size in memory	726.5 KiB
Average record size in memory	99.2 B

Variable types

Categorical	6
Numeric	1

Alerts

`gender` has 569 (7.6%) missing values	Missing
`age_at_diagnosis` has 907 (12.1%) missing values	Missing
`tumor_grade` has 4454 (59.4%) missing values	Missing

Reproduction

Analysis started	2025-06-19 17:54:42.474571
Analysis finished	2025-06-19 17:54:42.556073
Duration	0.08 seconds
Software version	ydata-profiling vv4.16.1
Download configuration	config.json

category
Categorical

Distinct	54
Distinct (%)	0.7%
Missing	0
Missing (%)	0.0%
Memory size	117.1 KiB

Blood or Bone marrow Acute myeloid leukemia	540
Uterus Endometrioid adenocarcinoma	362
Breast Infiltrating duct carcinoma	352
Head and Neck Squamous cell carcinoma	340
Thyroid gland Papillary carcinoma	337
Other values (49)	5565

Unique

Unique	0 ?
Unique (%)	0.0%

Sample

1st row	Colon Adenocarcinoma
2nd row	Colon Adenocarcinoma
3rd row	Stomach Carcinoma
4th row	Colon Adenocarcinoma
5th row	Brain Glioblastoma

Common Values

Value	Count	Frequency (%)
Blood or Bone marrow Acute myeloid leukemia	540	7.2%
Uterus Endometrioid adenocarcinoma	362	4.8%
Breast Infiltrating duct carcinoma	352	4.7%
Head and Neck Squamous cell carcinoma	340	4.5%
Thyroid gland Papillary carcinoma	337	4.5%
Lung Adenocarcinoma	321	4.3%
Lung Squamous cell carcinoma	302	4.0%
Kidney Renal cell carcinoma	266	3.5%
Colon Adenocarcinoma	259	3.5%
Skin Malignant melanoma	237	3.2%
Lung Healthy	236	3.1%
Liver Hepatocellular carcinoma	231	3.1%
Stomach Carcinoma	229	3.1%
Cervix uteri Squamous cell carcinoma	221	2.9%
Prostate gland Adenocarcinoma	221	2.9%
Brain Glioblastoma	221	2.9%
Kidney Healthy	216	2.9%
Pancreas Infiltrating duct carcinoma	200	2.7%
Bladder Transitional cell carcinoma	187	2.5%
Kidney Clear cell adenocarcinoma	186	2.5%
Blood or Bone marrow Healthy	158	2.1%
Kidney Papillary adenocarcinoma	154	2.1%
Prostate gland Acinar cell carcinoma	131	1.7%
Brain Oligodendroglioma	122	1.6%
Breast Lobular carcinoma	119	1.6%
Brain Astrocytoma	105	1.4%
Adrenal gland Pheochromocytoma	96	1.3%
Blood or Bone marrow Chronic lymphocytic leukemia	86	1.1%
Kidney Wilms tumor	76	1.0%
Ovarian Serous cancer	66	0.9%
Breast Healthy	66	0.9%
Uterus Serous cystadenocarcinoma	58	0.8%
Head and Neck Healthy	57	0.8%
Esophagus Squamous cell carcinoma	53	0.7%
Pancreas Healthy	53	0.7%
Bones Osteosarcoma	50	0.7%
Adrenal gland Neuroblastoma	49	0.7%
Adrenal gland Adrenal cortical carcinoma	46	0.6%
Esophagus Adenocarcinoma	45	0.6%
Thymus Thymoma	44	0.6%
Testis Seminoma	40	0.5%
Kidney Malignant rhabdoid tumor	40	0.5%
Prostate gland Healthy	39	0.5%
Thyroid gland Healthy	37	0.5%
Liver Healthy	33	0.4%
Blood or Bone marrow Acute lymphocytic leukemia	30	0.4%
Cervix uteri Adenocarcinoma	27	0.4%
Blood or Bone marrow Acute myelomonocytic leukemia	27	0.4%
Colon Healthy	26	0.3%
Retroperitoneum Dedifferentiated liposarcoma	24	0.3%
Pleura Epithelioid mesothelioma	22	0.3%
Anterior mediastinum Thymoma	20	0.3%
Retroperitoneum Leiomyosarcoma	17	0.2%
Uterus Healthy	16	0.2%

gender
Categorical

Missing

Distinct	2
Distinct (%)	< 0.1%
Missing	569
Missing (%)	7.6%
Memory size	375.2 KiB

male	3633
female	3294

Unique

Unique	0 ?
Unique (%)	0.0%

Sample

1st row	female
2nd row	female
3rd row	female
4th row	female
5th row	male

Common Values

Value	Count	Frequency (%)
male	3633	48.5%
female	3294	43.9%
(Missing)	569	7.6%

Common Values (Plot)

age_at_diagnosis
Real number (ℝ)

Missing

Distinct	4891
Distinct (%)	74.2%
Missing	907
Missing (%)	12.1%
Infinite	0
Infinite (%)	0.0%
Mean	20585.29929

Minimum	6
Maximum	32872
Zeros	0
Zeros (%)	0.0%
Negative	0
Negative (%)	0.0%
Memory size	375.2 KiB

Quantile statistics

Minimum	6
5-th percentile	4456
Q1	17745
median	21979
Q3	25281
95-th percentile	29082.2
Maximum	32872
Range	32866
Interquartile range (IQR)	7536

Descriptive statistics

Standard deviation	6876.112427
Coefficient of variation (CV)	0.3340302384
Kurtosis	1.170683759
Mean	20585.29929
Median Absolute Deviation (MAD)	3588
Skewness	-1.149106617
Sum	135636537
Variance	47280922.11
Monotonicity	Not monotonic

Histogram with fixed size bins (bins=50)

Value	Count	Frequency (%)
32872	18	0.2%
20550	7	0.1%
21891	7	0.1%
22718	7	0.1%
23404	6	0.1%
20286	6	0.1%
21949	5	0.1%
19314	5	0.1%
20425	5	0.1%
26559	5	0.1%
22407	5	0.1%
21263	5	0.1%
32871	5	0.1%
18885	5	0.1%
25462	5	0.1%
26555	5	0.1%
28865	5	0.1%
19855	5	0.1%
23275	5	0.1%
21144	5	0.1%
22179	5	0.1%
20598	4	0.1%
25659	4	0.1%
20507	4	0.1%
17215	4	0.1%
27320	4	0.1%
22041	4	0.1%
22176	4	0.1%
29529	4	0.1%
21194	4	0.1%
23353	4	0.1%
20369	4	0.1%
24825	4	0.1%
24019	4	0.1%
23413	4	0.1%
24846	4	0.1%
25138	4	0.1%
20237	4	0.1%
22285	4	0.1%
21488	4	0.1%
22997	4	0.1%
730	4	0.1%
24663	4	0.1%
8551	4	0.1%
21429	4	0.1%
21183	4	0.1%
23458	4	0.1%
29350	4	0.1%
18932	4	0.1%
19161	4	0.1%
21464	4	0.1%
25020	4	0.1%
19500	4	0.1%
32848	4	0.1%
1757	4	0.1%
14933	4	0.1%
24055	4	0.1%
24927	4	0.1%
22558	4	0.1%
22238	4	0.1%
22433	4	0.1%
24328	4	0.1%
22057	4	0.1%
19213	4	0.1%
30462	4	0.1%
26748	4	0.1%
12822	4	0.1%
24990	4	0.1%
25495	4	0.1%
25827	4	0.1%
24311	4	0.1%
26781	4	0.1%
26268	4	0.1%
24969	4	0.1%
22056	3	< 0.1%
23380	3	< 0.1%
25091	3	< 0.1%
26722	3	< 0.1%
19107	3	< 0.1%
25300	3	< 0.1%
20513	3	< 0.1%
21936	3	< 0.1%
23953	3	< 0.1%
24957	3	< 0.1%
28406	3	< 0.1%
23006	3	< 0.1%
24388	3	< 0.1%
27556	3	< 0.1%
19550	3	< 0.1%
18638	3	< 0.1%
1159	3	< 0.1%
29674	3	< 0.1%
3748	3	< 0.1%
21607	3	< 0.1%
24773	3	< 0.1%
5452	3	< 0.1%
20364	3	< 0.1%
23958	3	< 0.1%
15065	3	< 0.1%
24187	3	< 0.1%
22220	3	< 0.1%
18843	3	< 0.1%
18723	3	< 0.1%
367	3	< 0.1%
25703	3	< 0.1%
22045	3	< 0.1%
20066	3	< 0.1%
19390	3	< 0.1%
20728	3	< 0.1%
26582	3	< 0.1%
18822	3	< 0.1%
24282	3	< 0.1%
24896	3	< 0.1%
24660	3	< 0.1%
26976	3	< 0.1%
24046	3	< 0.1%
23603	3	< 0.1%
26840	3	< 0.1%
20771	3	< 0.1%
23162	3	< 0.1%
23313	3	< 0.1%
21749	3	< 0.1%
22455	3	< 0.1%
22745	3	< 0.1%
22317	3	< 0.1%
21252	3	< 0.1%
25935	3	< 0.1%
23547	3	< 0.1%
21515	3	< 0.1%
21730	3	< 0.1%
25709	3	< 0.1%
24774	3	< 0.1%
25477	3	< 0.1%
25891	3	< 0.1%
28432	3	< 0.1%
15842	3	< 0.1%
28367	3	< 0.1%
26021	3	< 0.1%
22771	3	< 0.1%
26058	3	< 0.1%
23656	3	< 0.1%
26409	3	< 0.1%
21164	3	< 0.1%
16195	3	< 0.1%
16460	3	< 0.1%
17168	3	< 0.1%
6000	3	< 0.1%
23649	3	< 0.1%
27092	3	< 0.1%
25039	3	< 0.1%
20979	3	< 0.1%
28275	3	< 0.1%
4121	3	< 0.1%
549	3	< 0.1%
3890	3	< 0.1%
24755	3	< 0.1%
24932	3	< 0.1%
27104	3	< 0.1%
3310	3	< 0.1%
17859	3	< 0.1%
22652	3	< 0.1%
18742	3	< 0.1%
19454	3	< 0.1%
20483	3	< 0.1%
23849	3	< 0.1%
23634	3	< 0.1%
22106	3	< 0.1%
26902	3	< 0.1%
645	3	< 0.1%
22332	3	< 0.1%
5356	3	< 0.1%
26044	3	< 0.1%
18491	3	< 0.1%
25247	3	< 0.1%
23514	3	< 0.1%
22475	3	< 0.1%
2686	3	< 0.1%
28706	3	< 0.1%
5885	3	< 0.1%
13671	3	< 0.1%
4559	3	< 0.1%
24887	3	< 0.1%
17396	3	< 0.1%
25223	3	< 0.1%
16504	3	< 0.1%
23480	3	< 0.1%
24085	3	< 0.1%
21374	3	< 0.1%
18611	3	< 0.1%
658	3	< 0.1%
329	3	< 0.1%
24719	3	< 0.1%
23892	3	< 0.1%
21803	3	< 0.1%
1482	3	< 0.1%
19066	3	< 0.1%
16425	3	< 0.1%
5830	3	< 0.1%
28714	3	< 0.1%
5420	3	< 0.1%
21281	3	< 0.1%
22863	3	< 0.1%
26143	3	< 0.1%
25205	3	< 0.1%
22039	3	< 0.1%
3399	3	< 0.1%
18827	3	< 0.1%
23797	3	< 0.1%
664	3	< 0.1%
18659	3	< 0.1%
25633	3	< 0.1%
24779	3	< 0.1%
23360	3	< 0.1%
25889	3	< 0.1%
25515	3	< 0.1%
3262	3	< 0.1%
6631	3	< 0.1%
366	3	< 0.1%
21514	3	< 0.1%
21093	3	< 0.1%
27183	3	< 0.1%
22990	3	< 0.1%
13138	3	< 0.1%
27684	3	< 0.1%
22684	3	< 0.1%
20392	3	< 0.1%
21764	3	< 0.1%
24731	3	< 0.1%
3050	3	< 0.1%
18510	3	< 0.1%
24243	3	< 0.1%
15137	3	< 0.1%
26084	3	< 0.1%
23227	3	< 0.1%
22957	3	< 0.1%
24623	3	< 0.1%
25902	3	< 0.1%
25328	3	< 0.1%
18785	3	< 0.1%
22199	3	< 0.1%
20363	3	< 0.1%
22645	3	< 0.1%
22344	3	< 0.1%
23955	3	< 0.1%
18990	3	< 0.1%
25502	3	< 0.1%
20764	3	< 0.1%
26136	3	< 0.1%
25407	3	< 0.1%
24834	3	< 0.1%
Other values (4641)	5723	76.3%
(Missing)	907	12.1%

Value	Count	Frequency (%)
6	1	< 0.1%
11	1	< 0.1%
25	1	< 0.1%
31	1	< 0.1%
43	1	< 0.1%

Value	Count	Frequency (%)
32872	18	0.2%
32871	5	0.1%
32848	4	0.1%
32784	1	< 0.1%
32731	1	< 0.1%

tissue_or_organ_of_origin
Categorical

Distinct	25
Distinct (%)	0.3%
Missing	0
Missing (%)	0.0%
Memory size	375.2 KiB

Kidney	938
Lung	859
Blood or Bone marrow	841
Breast	537
Brain	448
Other values (20)	3873

Unique

Unique	0 ?
Unique (%)	0.0%

Sample

1st row	Colon
2nd row	Colon
3rd row	Stomach
4th row	Colon
5th row	Brain

Common Values

Value	Count	Frequency (%)
Kidney	938	12.5%
Lung	859	11.5%
Blood or Bone marrow	841	11.2%
Breast	537	7.2%
Brain	448	6.0%
Uterus	436	5.8%
Head and Neck	397	5.3%
Prostate gland	391	5.2%
Thyroid gland	374	5.0%
Colon	285	3.8%
Liver	264	3.5%
Pancreas	253	3.4%
Cervix uteri	248	3.3%
Skin	237	3.2%
Stomach	229	3.1%
Adrenal gland	191	2.5%
Bladder	187	2.5%
Esophagus	98	1.3%
Ovarian	66	0.9%
Bones	50	0.7%
Thymus	44	0.6%
Retroperitoneum	41	0.5%
Testis	40	0.5%
Pleura	22	0.3%
Anterior mediastinum	20	0.3%

primary_diagnosis
Categorical

Distinct	38
Distinct (%)	0.5%
Missing	0
Missing (%)	0.0%
Memory size	375.2 KiB

Adenocarcinoma	989
Healthy	937
Squamous cell carcinoma	916
Infiltrating duct carcinoma	552
Acute myeloid leukemia	540
Other values (33)	3562

Unique

Unique	0 ?
Unique (%)	0.0%

Sample

1st row	Adenocarcinoma
2nd row	Adenocarcinoma
3rd row	Adenocarcinoma
4th row	Adenocarcinoma
5th row	Glioblastoma

Common Values

Value	Count	Frequency (%)
Adenocarcinoma	989	13.2%
Healthy	937	12.5%
Squamous cell carcinoma	916	12.2%
Infiltrating duct carcinoma	552	7.4%
Acute myeloid leukemia	540	7.2%
Papillary adenocarcinoma	389	5.2%
Endometrioid adenocarcinoma	362	4.8%
Renal cell carcinoma	266	3.5%
Malignant melanoma	237	3.2%
Hepatocellular carcinoma	231	3.1%
Glioblastoma	221	2.9%
Clear cell adenocarcinoma	186	2.5%
Transitional cell carcinoma	149	2.0%
Acinar cell carcinoma	131	1.7%
Oligodendroglioma	122	1.6%
Lobular carcinoma	119	1.6%
Astrocytoma	105	1.4%
Papillary carcinoma	102	1.4%
Pheochromocytoma	96	1.3%
Chronic lymphocytic leukemia	86	1.1%
Wilms tumor	76	1.0%
Serous cancer	66	0.9%
Thymoma	64	0.9%
Serous cystadenocarcinoma	58	0.8%
Osteosarcoma	50	0.7%
Neuroblastoma	49	0.7%
Tubular adenocarcinoma	46	0.6%
Adrenal cortical carcinoma	46	0.6%
Seminoma	40	0.5%
Malignant rhabdoid tumor	40	0.5%
Papillary transitional cell carcinoma	38	0.5%
Carcinoma	37	0.5%
Mucinous adenocarcinoma	30	0.4%
Acute lymphocytic leukemia	30	0.4%
Acute myelomonocytic leukemia	27	0.4%
Dedifferentiated liposarcoma	24	0.3%
Epithelioid mesothelioma	22	0.3%
Leiomyosarcoma	17	0.2%

tumor_grade
Categorical

Missing

Distinct	4
Distinct (%)	0.1%
Missing	4454
Missing (%)	59.4%
Memory size	375.2 KiB

G2	1493
G3	1181
G1	267
G4	101

Unique

Unique	0 ?
Unique (%)	0.0%

Sample

1st row	G2
2nd row	G2
3rd row	G2
4th row	G2
5th row	G1

Common Values

Value	Count	Frequency (%)
G2	1493	19.9%
G3	1181	15.8%
G1	267	3.6%
G4	101	1.3%
(Missing)	4454	59.4%

Common Values (Plot)

platform
Categorical

Distinct	3
Distinct (%)	< 0.1%
Missing	0
Missing (%)	0.0%
Memory size	375.2 KiB

450K	5369
EPIC	2104
EPICv2	23

Unique

Unique	0 ?
Unique (%)	0.0%

Sample

1st row	EPIC
2nd row	EPIC
3rd row	EPIC
4th row	EPIC
5th row	EPIC

Common Values

Value	Count	Frequency (%)
450K	5369	71.6%
EPIC	2104	28.1%
EPICv2	23	0.3%

Overview

Variables

Common Values

Common Values

Common Values (Plot)

Common Values

Common Values

Common Values

Common Values (Plot)

Common Values

Common Values (Plot)