{"text_format":"3","workbook":"xls","n_sheets":4,"sheets":["miRNA_Tar.annotation","lncRNA_cis_Tar.annotation","lncRNA_tran_Tar.annotation","circRNA_Tar.annotation"],"read":"whole","date_system":"1900","formulas":"cached_only"}

{"sheet":"miRNA_Tar.annotation","index":0,"n_rows":1133,"n_cols":15,"rows_kept":1133,"flags":["formulas_cached_only"]}
["#ID","FDR","PValue","FC","regulated","COG_class","COG_class_annotation","GO_annotation","KEGG_annotation","KOG_class","KOG_class_annotation","Swissprot_annotation","eggNOG_class","eggNOG_class_annotation","nr_annotation"]
["EVM0003864",{"v":1.22e-05,"d":"1.22E-05"},{"v":8.49e-07,"d":"8.49E-07"},1.873541896,"up","--","--","--","--","--","--","--","S","Function unknown","--"]
["Salvia_newGene_81180",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1A-6 GN=R1A-6 OS=Solanum demissum (Wild potato) PE=3 SV=2","T","Signal transduction mechanisms","hypothetical protein MIMGU_mgv1a023257mg, partial [Erythranthe guttata]"]
["Salvia_newGene_69499",0.000131541,{"v":1.15e-05,"d":"1.15E-05"},1.780467443,"up","[L]","Replication, recombination and repair ","Molecular Function: DNA binding (GO:0003677);; Molecular Function: RNA binding (GO:0003723);; Molecular Function: RNA-directed DNA polymerase activity (GO:0003964);; Biological Process: RNA-dependent DNA replication (GO:0006278);; Biological Process: DNA recombination (GO:0006310);; Molecular Function: zinc ion binding (GO:0008270);; Cellular Component: plastid (GO:0009536);; ","--","[R]","General function prediction only ","RNA-directed DNA polymerase homolog OS=Oenothera berteroana (Bertero&apos;s evening primrose) PE=4 SV=1","L","Replication, recombination and repair","PREDICTED: uncharacterized protein LOC104804969, partial [Tarenaya hassleriana]"]
["EVM0018223",{"v":8.08e-06,"d":"8.08E-06"},{"v":4.7e-07,"d":"4.70E-07"},1.894718978,"up","[RTKL]","--","Molecular Function: kinase activity (GO:0016301);; ","K04733|3.85768e-93|cic:CICLE_v10020714mg|hypothetical protein; K04733 interleukin-1 receptor-associated kinase 4 [EC:2.7.11.1] (A)","[T]","Signal transduction mechanisms ","Probable receptor-like protein kinase At1g33260 GN=At1g33260 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","T","Signal transduction mechanisms","--"]
["EVM0017008",{"v":4.33e-15,"d":"4.33E-15"},{"v":3.83e-17,"d":"3.83E-17"},3.394700436,"up","--","--","Molecular Function: phosphoprotein binding (GO:0051219);; ","--","--","--","Interactor of constitutive active ROPs 2, chloroplastic (Precursor) GN=T2N18.16 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","S","Function unknown","--"]
["EVM0022373",0.003350436,0.000486982,-1.819323946,"down","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: structural constituent of ribosome (GO:0003735);; Cellular Component: ribosome (GO:0005840);; Biological Process: translation (GO:0006412);; Molecular Function: rRNA binding (GO:0019843);; ","K02940|3.5155e-114|rcu:RCOM_1315040|60S ribosomal protein L9, putative; K02940 large subunit ribosomal protein L9e (A)","[J]","Translation, ribosomal structure and biogenesis ","60S ribosomal protein L9-2 GN=RPL9D OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","J","Translation, ribosomal structure and biogenesis","--"]
["EVM0010430",0.000859097,{"v":8.99e-05,"d":"8.99E-05"},1.605568787,"up","[C]","Energy production and conversion ","Molecular Function: oxoglutarate dehydrogenase (succinyl-transferring) activity (GO:0004591);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: tricarboxylic acid cycle (GO:0006099);; Molecular Function: zinc ion binding (GO:0008270);; Molecular Function: thiamine pyrophosphate binding (GO:0030976);; Biological Process: response to cadmium ion (GO:0046686);; Molecular Function: cobalt ion binding (GO:0050897);; ","K00164|0|rcu:RCOM_0465620|2-oxoglutarate dehydrogenase, putative (EC:1.2.4.2); K00164 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2] (A)","[G]","Carbohydrate transport and metabolism ","--","G","Carbohydrate transport and metabolism","--"]
["EVM0017168",{"v":1.77e-07,"d":"1.77E-07"},{"v":6.8e-09,"d":"6.80E-09"},1.982657973,"up","--","--","--","--","--","--","Protein CUP-SHAPED COTYLEDON 2 GN=K19P17.12 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","K","Transcription","--"]
["EVM0012612",0.006340017,0.001206158,1.325876238,"up","--","--","Molecular Function: signal transducer activity (GO:0004871);; Biological Process: signal transduction (GO:0007165);; Biological Process: response to light stimulus (GO:0009416);; Biological Process: pollen tube growth (GO:0009860);; ","--","--","--","BTB/POZ domain-containing protein At1g03010 GN=At1g03010 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","--"]
["EVM0002121",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1B-17 GN=R1B-17 OS=Solanum demissum (Wild potato) PE=3 SV=1","T","Signal transduction mechanisms","--"]
["EVM0020621",0.006008258,0.001082884,-3.873231793,"down","--","--","--","--","--","--","Serine/threonine-protein kinase ATM GN=ATM OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","--"]
["EVM0021426",0.001255966,0.00013874,1.248541407,"up","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1A-6 GN=R1A-6 OS=Solanum demissum (Wild potato) PE=3 SV=2","T","Signal transduction mechanisms","--"]
["EVM0013185",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1B-16 GN=R1B-16 OS=Solanum demissum (Wild potato) PE=3 SV=1","T","Signal transduction mechanisms","--"]
["EVM0007695",0.006008258,0.001082884,-3.873231793,"down","--","--","--","--","[K]","Transcription ","Golgin candidate 5 GN=GC5 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","K","Transcription","--"]
["Salvia_newGene_319",0.001255966,0.00013874,1.248541407,"up","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1A-6 GN=R1A-6 OS=Solanum demissum (Wild potato) PE=3 SV=2","T","Signal transduction mechanisms","hypothetical protein MIMGU_mgv1a023806mg [Erythranthe guttata]"]
["EVM0002991",0.004969279,0.000866735,-2.685422322,"down","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: translation initiation factor activity (GO:0003743);; Molecular Function: GTPase activity (GO:0003924);; Molecular Function: GTP binding (GO:0005525);; Biological Process: GTP catabolic process (GO:0006184);; Biological Process: translational initiation (GO:0006413);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: chloroplast relocation (GO:0009902);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: thylakoid membrane organization (GO:0010027);; Biological Process: regulation of proton transport (GO:0010155);; Biological Process: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway (GO:0019288);; Biological Process: ncRNA metabolic process (GO:0034660);; Biological Process: transcription from plastid promoter (GO:0042793);; Biological Process: protein autophosphorylation (GO:0046777);; ","K02519|0|sly:101254504|translation initiation factor IF-2, chloroplastic; K02519 translation initiation factor IF-2 (A)","[J]","Translation, ribosomal structure and biogenesis ","Translation initiation factor IF-2, chloroplastic (Precursor) GN=At1g17220 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","J","Translation, ribosomal structure and biogenesis","--"]
["Salvia_newGene_54450",{"v":9.26e-06,"d":"9.26E-06"},{"v":5.92e-07,"d":"5.92E-07"},2.146060612,"up","--","--","Molecular Function: ATP binding (GO:0005524);; Biological Process: DNA repair (GO:0006281);; Cellular Component: Mre11 complex (GO:0030870);; ","K10866|3.93393e-19|fve:101295908|LOW QUALITY PROTEIN: DNA repair protein RAD50-like; K10866 DNA repair protein RAD50 [EC:3.6.-.-] (A)","[L]","Replication, recombination and repair ","DNA repair protein RAD50 GN=RAD50 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","L","Replication, recombination and repair","PREDICTED: DNA repair protein RAD50 [Sesamum indicum]"]
["EVM0008249",0.003617439,0.000544916,-1.575748334,"up,down","--","--","--","--","--","--","Mediator of RNA polymerase II transcription subunit 33A GN=At3g23590 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","S","Function unknown","--"]
["EVM0022835",0.006008258,0.001082884,-3.873231793,"down","[L]","Replication, recombination and repair ","Molecular Function: nucleic acid binding (GO:0003676);; Biological Process: DNA metabolic process (GO:0006259);; Molecular Function: metal ion binding (GO:0046872);; ","--","[R]","General function prediction only ","Uncharacterized mitochondrial protein AtMg00860 GN=AtMg00860 OS=Arabidopsis thaliana (Mouse-ear cress) PE=4 SV=1","L","Replication, recombination and repair","--"]
["EVM0018981",0.001255966,0.00013874,1.248541407,"up","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1A-6 GN=R1A-6 OS=Solanum demissum (Wild potato) PE=3 SV=2","T","Signal transduction mechanisms","--"]
["EVM0000647",0.006008258,0.001082884,-3.873231793,"down","--","--","--","--","--","--","F-box/LRR-repeat protein At1g67190 GN=At1g67190 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","--"]
["EVM0014445",{"v":8.08e-06,"d":"8.08E-06"},{"v":4.7e-07,"d":"4.70E-07"},1.894718978,"up","[C]","Energy production and conversion ","Molecular Function: oxidoreductase activity (GO:0016491);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","--","--","--","S","Function unknown","--"]
["EVM0024032",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1B-16 GN=R1B-16 OS=Solanum demissum (Wild potato) PE=3 SV=1","T","Signal transduction mechanisms","--"]
["EVM0012504",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","K13457|1.08434e-105|pop:POPTR_0003s14960g|POPTRDRAFT_554585; disease resistance family protein; K13457 disease resistance protein RPM1 (A)","[T]","Signal transduction mechanisms ","Disease resistance protein RPH8A GN=RPH8A OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1","T","Signal transduction mechanisms","--"]
["EVM0010461",0.000834612,{"v":8.25e-05,"d":"8.25E-05"},-1.278991609,"down","--","--","Biological Process: transcription, DNA-templated (GO:0006351);; ","--","--","--","Scarecrow-like protein 32 GN=SCL32 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","--"]
["EVM0009893",0.004969279,0.000866735,-2.685422322,"down","--","--","--","--","[G]","Carbohydrate transport and metabolism ","--","G","Carbohydrate transport and metabolism","--"]
["EVM0004829",0.00280583,0.000350729,1.891294437,"up","--","--","--","--","--","--","Squamosa promoter-binding-like protein 12 GN=SPL12 OS=Oryza sativa subsp. indica (Rice) PE=2 SV=1","K","Transcription","--"]
["Salvia_newGene_53199",0.00084516,{"v":8.6e-05,"d":"8.60E-05"},-1.53399087,"down","--","--","--","--","[D]","Cell cycle control, cell division, chromosome partitioning ","--","D","Cell cycle control, cell division, chromosome partitioning","unnamed protein product [Coffea canephora]"]
["EVM0003778",{"v":4.88e-07,"d":"4.88E-07"},{"v":2.13e-08,"d":"2.13E-08"},-1.868863205,"down","--","--","Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: membrane fusion (GO:0006944);; Molecular Function: zinc ion binding (GO:0008270);; Molecular Function: actin filament binding (GO:0051015);; Biological Process: actin filament bundle assembly (GO:0051017);; ","--","[TZ]","--","LIM domain-containing protein WLIM1 {ECO:0000305} OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","Z","Cytoskeleton","--"]
["EVM0006870",{"v":9.26e-06,"d":"9.26E-06"},{"v":5.92e-07,"d":"5.92E-07"},2.146060612,"up","[U]","Intracellular trafficking, secretion, and vesicular transport ","Cellular Component: integral component of membrane (GO:0016021);; Biological Process: vesicle-mediated transport (GO:0016192);; ","K08511|1.06209e-114|tcc:TCM_029360|Vesicle-associated membrane protein 726 isoform 1; K08511 vesicle-associated membrane protein 72 (A)","[U]","Intracellular trafficking, secretion, and vesicular transport ","Vesicle-associated membrane protein 722 GN=F25I18.14 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","U","Intracellular trafficking, secretion, and vesicular transport","--"]
["Salvia_newGene_54535",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1B-14 GN=R1B-14 OS=Solanum demissum (Wild potato) PE=3 SV=1","T","Signal transduction mechanisms","hypothetical protein MIMGU_mgv1a020452mg [Erythranthe guttata]"]
["EVM0017887",0.000870664,{"v":9.36e-05,"d":"9.36E-05"},-1.307666533,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative disease resistance protein At1g50180 GN=At1g50180 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=2","T","Signal transduction mechanisms","--"]
["EVM0024546",{"v":4.69e-08,"d":"4.69E-08"},{"v":1.23e-09,"d":"1.23E-09"},2.255629445,"up","--","--","--","K08488|8.12722e-79|pmum:103330420|syntaxin-22-like; K08488 syntaxin 7 (A)","[U]","Intracellular trafficking, secretion, and vesicular transport ","Syntaxin-22 GN=MSD23.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","--"]
["EVM0009007",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1A-6 GN=R1A-6 OS=Solanum demissum (Wild potato) PE=3 SV=2","T","Signal transduction mechanisms","--"]
["Salvia_newGene_86723",{"v":4.69e-08,"d":"4.69E-08"},{"v":1.23e-09,"d":"1.23E-09"},2.255629445,"up","--","--","--","--","--","--","--","--","--","PREDICTED: replication protein A 70 kDa DNA-binding subunit C-like, partial [Nicotiana sylvestris]"]
["EVM0018903",0.006008258,0.001082884,-3.873231793,"down","--","--","Biological Process: cellular process (GO:0009987);; ","--","--","--","--","S","Function unknown","--"]
["EVM0001174",{"v":4.69e-08,"d":"4.69E-08"},{"v":1.23e-09,"d":"1.23E-09"},2.255629445,"up","--","--","Molecular Function: chitinase activity (GO:0004568);; Biological Process: carbohydrate metabolic process (GO:0005975);; Biological Process: chitin catabolic process (GO:0006032);; Molecular Function: chitin binding (GO:0008061);; Biological Process: cell wall macromolecule catabolic process (GO:0016998);; ","K01183|1.09128e-114|zma:100283098|endochitinase A (EC:3.2.1.14); K01183 chitinase [EC:3.2.1.14] (A)","[R]","General function prediction only ","Endochitinase A (Precursor) OS=Zea mays (Maize) PE=1 SV=1","R","General function prediction only","--"]
["Salvia_newGene_66225",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1B-16 GN=R1B-16 OS=Solanum demissum (Wild potato) PE=3 SV=1","T","Signal transduction mechanisms","hypothetical protein MIMGU_mgv1a024375mg, partial [Erythranthe guttata]"]
["EVM0002179",0.000131541,{"v":1.15e-05,"d":"1.15E-05"},1.780467443,"up","[T]","Signal transduction mechanisms ","Molecular Function: protein tyrosine phosphatase activity (GO:0004725);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: peptidyl-tyrosine dephosphorylation (GO:0035335);; ","K01104|2.99102e-101|tcc:TCM_041477|Low molecular weight protein-tyrosine-phosphatase slr0328; K01104 protein-tyrosine phosphatase [EC:3.1.3.48] (A)","[T]","Signal transduction mechanisms ","--","T","Signal transduction mechanisms","--"]
["EVM0019706",{"v":4.69e-08,"d":"4.69E-08"},{"v":1.23e-09,"d":"1.23E-09"},2.255629445,"up","[O]","Posttranslational modification, protein turnover, chaperones ","Molecular Function: serine-type endopeptidase activity (GO:0004252);; Cellular Component: extracellular region (GO:0005576);; Biological Process: proteolysis (GO:0006508);; Molecular Function: identical protein binding (GO:0042802);; Biological Process: negative regulation of catalytic activity (GO:0043086);; ","--","--","--","Subtilisin-like protease (Precursor) GN=At5g67360 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0019971",0.006008258,0.001082884,-3.873231793,"down","--","--","Cellular Component: THO complex part of transcription export complex (GO:0000445);; Biological Process: mRNA processing (GO:0006397);; ","K13176|9.97291e-130|tcc:TCM_025487|Tho complex subunit 7/Mft1p; K13176 THO complex subunit 7 (A)","[S]","Function unknown ","THO complex subunit 7A GN=F5E19.130 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","S","Function unknown","--"]
["EVM0025287",0.00280583,0.000350729,1.891294437,"up","[V]","Defense mechanisms ","Biological Process: polysaccharide biosynthetic process (GO:0000271);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: ATP catabolic process (GO:0006200);; Biological Process: pattern specification process (GO:0007389);; Biological Process: regulation of cell size (GO:0008361);; Molecular Function: xenobiotic-transporting ATPase activity (GO:0008559);; Biological Process: response to blue light (GO:0009637);; Biological Process: photomorphogenesis (GO:0009640);; Biological Process: multidimensional cell growth (GO:0009825);; Biological Process: cell tip growth (GO:0009932);; Biological Process: positive gravitropism (GO:0009958);; Biological Process: vernalization response (GO:0010048);; Biological Process: response to far red light (GO:0010218);; Biological Process: auxin efflux (GO:0010315);; Molecular Function: auxin efflux transmembrane transporter activity (GO:0010329);; Biological Process: basipetal auxin transport (GO:0010540);; Biological Process: acropetal auxin transport (GO:0010541);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: anthocyanin accumulation in tissues in response to UV light (GO:0043481);; Biological Process: carpel development (GO:0048440);; Biological Process: stamen development (GO:0048443);; Biological Process: lateral root development (GO:0048527);; Biological Process: root hair elongation (GO:0048767);; Biological Process: transmembrane transport (GO:0055085);; Biological Process: cell wall organization (GO:0071555);; ","K05658|0|sot:102587959|ABC transporter B family member 19-like; K05658 ATP-binding cassette, subfamily B (MDR/TAP), member 1 [EC:3.6.3.44] (A)","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","ABC transporter B family member 19 GN=MLD15.2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","--"]
["EVM0000660",0.000870664,{"v":9.36e-05,"d":"9.36E-05"},-1.307666533,"down","--","--","--","K13457|8.75431e-140|sot:102595981|putative disease resistance protein At1g50180-like (A)","[T]","Signal transduction mechanisms ","Disease resistance protein RPP8 GN=MWF20.19 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","T","Signal transduction mechanisms","--"]
["EVM0003654",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1B-12 GN=R1B-12 OS=Solanum demissum (Wild potato) PE=3 SV=2","T","Signal transduction mechanisms","--"]
["EVM0028028",0.003617439,0.000544916,-1.575748334,"up,down","[O]","Posttranslational modification, protein turnover, chaperones ","--","--","[O]","Posttranslational modification, protein turnover, chaperones ","Protein cfxQ homolog GN=cfxQ OS=Odontella sinensis (Marine centric diatom) PE=3 SV=1","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0014123",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1B-17 GN=R1B-17 OS=Solanum demissum (Wild potato) PE=3 SV=1","T","Signal transduction mechanisms","--"]
["EVM0026983",{"v":8.08e-06,"d":"8.08E-06"},{"v":4.7e-07,"d":"4.70E-07"},1.894718978,"up","--","--","--","--","[GC]","--","UDP-glycosyltransferase 86A1 GN=UGT86A1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","G","Carbohydrate transport and metabolism","--"]
["EVM0017030",0.001255966,0.00013874,1.248541407,"up","[Z]","Cytoskeleton ","Molecular Function: GTPase activity (GO:0003924);; Molecular Function: structural constituent of cytoskeleton (GO:0005200);; Molecular Function: GTP binding (GO:0005525);; Cellular Component: cytoplasm (GO:0005737);; Cellular Component: microtubule (GO:0005874);; Biological Process: GTP catabolic process (GO:0006184);; Biological Process: microtubule-based process (GO:0007017);; Biological Process: protein polymerization (GO:0051258);; ","K07375|0|cic:CICLE_v10004755mg|hypothetical protein; K07375 tubulin beta (A)","[Z]","Cytoskeleton ","Tubulin beta-8 chain GN=MRO11.10 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","Z","Cytoskeleton","--"]
["Salvia_newGene_25466",0.004594858,0.000734643,1.289646579,"up","[U]","Intracellular trafficking, secretion, and vesicular transport ","Molecular Function: structural molecule activity (GO:0005198);; ","--","[U]","Intracellular trafficking, secretion, and vesicular transport ","Vesicle-associated protein 1-1, N-terminally processed GN=T4C21.10 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","PREDICTED: vesicle-associated protein 1-1 [Sesamum indicum]"]
["EVM0024368",{"v":1.22e-07,"d":"1.22E-07"},{"v":3.56e-09,"d":"3.56E-09"},2.01139798,"up","[R]","General function prediction only ","Molecular Function: zinc ion binding (GO:0008270);; Biological Process: response to bacterium (GO:0009617);; Biological Process: plant-type hypersensitive response (GO:0009626);; Biological Process: lignin biosynthetic process (GO:0009809);; Molecular Function: aryl-alcohol dehydrogenase (NAD+) activity (GO:0018456);; Molecular Function: cinnamyl-alcohol dehydrogenase activity (GO:0045551);; Molecular Function: geraniol dehydrogenase activity (GO:0047924);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00083|0|pop:POPTR_0016s06540g|POPTRDRAFT_735178; cinnamyl-alcohol dehydrogenase family protein; K00083 cinnamyl-alcohol dehydrogenase [EC:1.1.1.195] (A)","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Geraniol dehydrogenase 1 GN=GEDH1 OS=Ocimum basilicum (Sweet basil) PE=1 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","--"]
["EVM0018909",0.006008258,0.001082884,-3.873231793,"down","--","--","Biological Process: mRNA splicing, via spliceosome (GO:0000398);; ","--","--","--","--","S","Function unknown","--"]
["EVM0008676",0.006340017,0.001206158,1.325876238,"up","--","--","Molecular Function: ATP binding (GO:0005524);; Cellular Component: nucleus (GO:0005634);; Cellular Component: membrane (GO:0016020);; ","--","[D]","Cell cycle control, cell division, chromosome partitioning ","--","D","Cell cycle control, cell division, chromosome partitioning","--"]
["EVM0019705",0.006008258,0.001082884,-3.873231793,"down","[RTKL]","--","Molecular Function: kinase activity (GO:0016301);; ","--","--","--","Cysteine-rich receptor-like protein kinase 26 (Precursor) GN=CRK26 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","T","Signal transduction mechanisms","--"]
["EVM0012604",0.00280583,0.000350729,1.891294437,"up","[IQR]","--","Molecular Function: tropine dehydrogenase activity (GO:0050356);; Biological Process: oxidation-reduction process (GO:0055114);; ","K08081|6.12032e-124|sot:102595884|tropinone reductase homolog; K08081 Tropinone reductase 1 [EC:1.1.1.206] (A)","[R]","General function prediction only ","Tropinone reductase homolog OS=Datura stramonium (Jimsonweed) PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","--"]
["EVM0025233",0.006008258,0.001082884,-3.873231793,"down","[R]","General function prediction only ","Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors (GO:0016706);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","[QR]","--","Protein SRG1 GN=SRG1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","--"]
["EVM0010076",{"v":4.33e-15,"d":"4.33E-15"},{"v":2.16e-17,"d":"2.16E-17"},-4.227019327,"down","--","--","--","--","--","--","--","S","Function unknown","--"]
["Salvia_newGene_65914",{"v":4.33e-15,"d":"4.33E-15"},{"v":3.83e-17,"d":"3.83E-17"},3.394700436,"up","--","--","Molecular Function: transferase activity (GO:0016740);; Molecular Function: hydrolase activity (GO:0016787);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: nucleic acid metabolic process (GO:0090304);; ","--","[R]","General function prediction only ","Endonuclease OS=Nicotiana tabacum (Common tobacco) PE=2 SV=1","R","General function prediction only","hypothetical retrotransposon [Ipomoea batatas]"]
["EVM0001397",0.006340017,0.001203061,1.325876238,"up","--","--","--","--","[R]","General function prediction only ","Pentatricopeptide repeat-containing protein At1g11290 GN=T28P6.20 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","--"]
["EVM0011114",0.000870664,{"v":9.36e-05,"d":"9.36E-05"},-1.307666533,"down","[RTKL]","--","Molecular Function: transferase activity, transferring phosphorus-containing groups (GO:0016772);; ","--","--","--","Probable LRR receptor-like serine/threonine-protein kinase At3g47570 (Precursor) GN=At3g47570 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","T","Signal transduction mechanisms","--"]
["EVM0014598",0.001435248,0.000164806,1.255222109,"up","[R]","General function prediction only ","Molecular Function: nucleotide binding (GO:0000166);; Molecular Function: RNA binding (GO:0003723);; Cellular Component: nucleus (GO:0005634);; ","--","[R]","General function prediction only ","Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba (White mustard) PE=2 SV=1","A","RNA processing and modification","--"]
["EVM0021411",0.002108628,0.000251319,-1.575748334,"up,down","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0025236",{"v":4.69e-08,"d":"4.69E-08"},{"v":1.23e-09,"d":"1.23E-09"},2.255629445,"up","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Molecular Function: oxidoreductase activity (GO:0016491);; Biological Process: single-organism metabolic process (GO:0044710);; Molecular Function: metal ion binding (GO:0046872);; ","--","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Laccase-7 (Precursor) GN=LAC7 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","--"]
["EVM0007062",0.00280583,0.000350729,1.891294437,"up","--","--","Biological Process: metabolic process (GO:0008152);; ","--","--","--","Polyphenol oxidase, chloroplastic (Precursor) OS=Vitis vinifera (Grape) PE=1 SV=1","S","Function unknown","--"]
["Salvia_newGene_24039",{"v":4.69e-08,"d":"4.69E-08"},{"v":1.23e-09,"d":"1.23E-09"},2.255629445,"up","--","--","--","--","--","--","--","K","Transcription","SQUAMOSA promoter binding protein-like 2, partial [Salvia miltiorrhiza]"]
["EVM0007082",{"v":1.22e-07,"d":"1.22E-07"},{"v":3.56e-09,"d":"3.56E-09"},2.01139798,"up","[V]","Defense mechanisms ","Molecular Function: ATP binding (GO:0005524);; Biological Process: ATP catabolic process (GO:0006200);; Molecular Function: xenobiotic-transporting ATPase activity (GO:0008559);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: transmembrane transport (GO:0055085);; ","K05658|0|pper:PRUPE_ppa023915mg|hypothetical protein; K05658 ATP-binding cassette, subfamily B (MDR/TAP), member 1 [EC:3.6.3.44] (A)","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Putative ABC transporter B family member 8 GN=MJI6.16 OS=Arabidopsis thaliana (Mouse-ear cress) PE=5 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","--"]
["EVM0014526",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1B-23 GN=R1B-23 OS=Solanum demissum (Wild potato) PE=3 SV=1","T","Signal transduction mechanisms","--"]
["EVM0005006",0.00280583,0.000350729,1.891294437,"up","--","--","Molecular Function: RNA binding (GO:0003723);; Cellular Component: intracellular (GO:0005622);; Biological Process: nucleobase-containing compound metabolic process (GO:0006139);; Biological Process: protein targeting to vacuole (GO:0006623);; Molecular Function: 3'-5' exonuclease activity (GO:0008408);; Biological Process: vesicle-mediated transport (GO:0016192);; ","K18740|0|pper:PRUPE_ppa008192mg|hypothetical protein; K18740 exonuclease 3'-5' domain-containing protein 1 (A)","[L]","Replication, recombination and repair ","--","L","Replication, recombination and repair","--"]
["EVM0009023",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","Cellular Component: nucleus (GO:0005634);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: endocytosis (GO:0006897);; Cellular Component: cell plate (GO:0009504);; Cellular Component: plasmodesma (GO:0009506);; Cellular Component: phragmoplast (GO:0009524);; Biological Process: pollen development (GO:0009555);; Biological Process: cellulose biosynthetic process (GO:0030244);; Biological Process: Golgi vesicle transport (GO:0048193);; ","--","--","--","Protein TPLATE OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","S","Function unknown","--"]
["EVM0006175",0.001255966,0.00013874,1.248541407,"up","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1A-6 GN=R1A-6 OS=Solanum demissum (Wild potato) PE=3 SV=2","T","Signal transduction mechanisms","--"]
["EVM0009905",{"v":9.26e-06,"d":"9.26E-06"},{"v":5.92e-07,"d":"5.92E-07"},2.146060612,"up","[S]","Function unknown ","Biological Process: metabolic process (GO:0008152);; Molecular Function: oxidoreductase activity (GO:0016491);; ","--","--","--","LRR receptor-like serine/threonine-protein kinase GSO1 (Precursor) GN=GSO1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","--"]
["EVM0027414",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1B-14 GN=R1B-14 OS=Solanum demissum (Wild potato) PE=3 SV=1","T","Signal transduction mechanisms","--"]
["EVM0025633",0.001435248,0.000164806,1.255222109,"up","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0023462",{"v":4.69e-08,"d":"4.69E-08"},{"v":1.23e-09,"d":"1.23E-09"},2.255629445,"up","--","--","Molecular Function: phosphatidylcholine-sterol O-acyltransferase activity (GO:0004607);; Cellular Component: vacuolar membrane (GO:0005774);; Biological Process: lipid metabolic process (GO:0006629);; Biological Process: mRNA modification (GO:0016556);; Biological Process: cellular cation homeostasis (GO:0030003);; Biological Process: divalent metal ion transport (GO:0070838);; ","K06129|0|pmum:103320484|lecithin-cholesterol acyltransferase-like 1; K06129 lysophospholipase III [EC:3.1.1.5] (A)","[I]","Lipid transport and metabolism ","Lecithin-cholesterol acyltransferase-like 1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","I","Lipid transport and metabolism","--"]
["Salvia_newGene_54337",0.000870664,{"v":9.36e-05,"d":"9.36E-05"},-1.307666533,"down","--","--","Molecular Function: lyase activity (GO:0016829);; Molecular Function: metal ion binding (GO:0046872);; ","K04121|8.52667e-06|pvu:PHAVU_005G048500g|hypothetical protein; K04121 ent-kaurene synthase [EC:4.2.3.19] (A)","--","--","--","--","--","kaurene synthase-like 1 [Rosmarinus officinalis]"]
["Salvia_newGene_74569",0.002882341,0.00037705,-1.99604038,"down","--","--","Molecular Function: binding (GO:0005488);; ","--","--","--","--","R","General function prediction only","PREDICTED: zinc finger MYM-type protein 1-like [Beta vulgaris subsp. vulgaris]"]
["EVM0023167",0.001435248,0.000164806,1.255222109,"up","--","--","--","--","--","--","Transcriptional corepressor SEUSS GN=SEU OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","S","Function unknown","--"]
["EVM0009822",0.001435248,0.000164806,1.255222109,"up","--","--","--","--","--","--","Transcriptional corepressor SEUSS GN=SEU OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","S","Function unknown","--"]
["EVM0007899",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1A-6 GN=R1A-6 OS=Solanum demissum (Wild potato) PE=3 SV=2","T","Signal transduction mechanisms","--"]
["EVM0014978",0.000870664,{"v":9.36e-05,"d":"9.36E-05"},-1.307666533,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1A-6 GN=R1A-6 OS=Solanum demissum (Wild potato) PE=3 SV=2","T","Signal transduction mechanisms","--"]
["EVM0005703",{"v":4.33e-15,"d":"4.33E-15"},{"v":2.16e-17,"d":"2.16E-17"},-4.227019327,"down","[R]","General function prediction only ","Molecular Function: organic cyclic compound binding (GO:0097159);; Molecular Function: heterocyclic compound binding (GO:1901363);; ","--","[R]","General function prediction only ","Glycine-rich RNA-binding protein 3, mitochondrial (Precursor) GN=MAF19_30 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","--"]
["EVM0009313",0.006705101,0.001353126,-1.606064416,"down","[R]","General function prediction only ","--","K13217|0|sot:102590021|uncharacterized LOC102590021; K13217 pre-mRNA-processing factor 39 (A)","[A]","RNA processing and modification ","--","A","RNA processing and modification","--"]
["EVM0016156",0.001255966,0.00013874,1.248541407,"up","--","--","--","--","--","--","Subtilisin-like protease (Precursor) GN=At5g67360 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0008612",0.006008258,0.001082884,1.325876238,"up,down","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Molecular Function: oxidoreductase activity (GO:0016491);; Molecular Function: metal ion binding (GO:0046872);; ","--","[QI]","--","Cytochrome P450 CYP72A219 OS=Panax ginseng (Korean ginseng) PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","--"]
["EVM0000703",{"v":4.69e-08,"d":"4.69E-08"},{"v":1.23e-09,"d":"1.23E-09"},2.255629445,"up","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Molecular Function: copper ion binding (GO:0005507);; Biological Process: lignin catabolic process (GO:0046274);; Cellular Component: apoplast (GO:0048046);; Molecular Function: hydroquinone:oxygen oxidoreductase activity (GO:0052716);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Laccase-7 (Precursor) GN=LAC7 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","--"]
["EVM0007987",0.003617439,0.000544916,-1.575748334,"up,down","[KAD]","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: chromatin binding (GO:0003682);; ","K09422|1.71026e-72|mus:103974334|transcription factor RAX2-like; K09422 myb proto-oncogene protein, plant (A)","[K]","Transcription ","Transcription factor RAX1 GN=T20O7.2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","K","Transcription","--"]
["EVM0027036",0.006340017,0.001203061,1.325876238,"up","--","--","Cellular Component: extracellular region (GO:0005576);; ","--","--","--","--","R","General function prediction only","--"]
["EVM0016830",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1B-16 GN=R1B-16 OS=Solanum demissum (Wild potato) PE=3 SV=1","T","Signal transduction mechanisms","--"]
["EVM0010590",{"v":4.33e-15,"d":"4.33E-15"},{"v":3.83e-17,"d":"3.83E-17"},3.394700436,"up","--","--","--","--","--","--","--","S","Function unknown","--"]
["Salvia_newGene_45761",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Probable disease resistance RPP8-like protein 2 GN=RPP8L2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1","T","Signal transduction mechanisms","PREDICTED: putative late blight resistance protein homolog R1B-16 [Sesamum indicum]"]
["EVM0012796",0.002108628,0.000251319,1.378487044,"up","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0026829",{"v":4.69e-08,"d":"4.69E-08"},{"v":1.23e-09,"d":"1.23E-09"},2.255629445,"up","[R]","General function prediction only ","Molecular Function: chitinase activity (GO:0004568);; Cellular Component: cell wall (GO:0005618);; Biological Process: carbohydrate metabolic process (GO:0005975);; Biological Process: chitin catabolic process (GO:0006032);; Molecular Function: chitin binding (GO:0008061);; Biological Process: cell wall macromolecule catabolic process (GO:0016998);; ","K01183|1.31503e-116|sita:101763181|endochitinase A-like; K01183 chitinase [EC:3.2.1.14] (A)","[R]","General function prediction only ","Chitinase 5 (Precursor) OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","G","Carbohydrate transport and metabolism","--"]
["EVM0010595",0.006008258,0.001082884,-3.873231793,"down","--","--","--","--","[R]","General function prediction only ","Pentatricopeptide repeat-containing protein At1g12300, mitochondrial (Precursor) GN=At1g12300 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","--"]
["EVM0027963",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1A-6 GN=R1A-6 OS=Solanum demissum (Wild potato) PE=3 SV=2","R","General function prediction only","--"]
["EVM0023387",{"v":4.69e-08,"d":"4.69E-08"},{"v":1.23e-09,"d":"1.23E-09"},2.255629445,"up","[Z]","Cytoskeleton ","Biological Process: phragmoplast assembly (GO:0000914);; Cellular Component: gamma-tubulin complex (GO:0000930);; Molecular Function: GTPase activity (GO:0003924);; Molecular Function: GTP binding (GO:0005525);; Cellular Component: cell wall (GO:0005618);; Cellular Component: nuclear envelope (GO:0005635);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: microtubule (GO:0005874);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: GTP catabolic process (GO:0006184);; Biological Process: microtubule nucleation (GO:0007020);; Biological Process: embryo sac development (GO:0009553);; Biological Process: stomatal complex morphogenesis (GO:0010103);; Biological Process: cytoplasmic microtubule organization (GO:0031122);; Biological Process: leaf development (GO:0048366);; Biological Process: root hair cell tip growth (GO:0048768);; Biological Process: protein polymerization (GO:0051258);; Biological Process: cellular localization (GO:0051641);; ","K10389|0|sot:102582533|tubulin gamma-1 chain-like; K10389 tubulin gamma (A)","[Z]","Cytoskeleton ","Tubulin gamma-1 chain GN=TUBG1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","Z","Cytoskeleton","--"]
["EVM0024632",0.000870664,{"v":9.36e-05,"d":"9.36E-05"},-1.307666533,"down","--","--","--","K13420|0|sly:101264408|LRR receptor-like serine/threonine-protein kinase EFR; K13420 LRR receptor-like serine/threonine-protein kinase FLS2 [EC:2.7.11.1] (A)","--","--","Probable LRR receptor-like serine/threonine-protein kinase At3g47570 (Precursor) GN=At3g47570 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","--"]
["Salvia_newGene_53375",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1A-6 GN=R1A-6 OS=Solanum demissum (Wild potato) PE=3 SV=2","T","Signal transduction mechanisms","hypothetical protein MIMGU_mgv1a023991mg [Erythranthe guttata]"]
["EVM0000874",0.000429328,{"v":4.12e-05,"d":"4.12E-05"},-1.334295441,"down","--","--","--","--","[R]","General function prediction only ","Pentatricopeptide repeat-containing protein At5g15280 GN=At5g15280 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","--"]
["EVM0012632",0.000870664,{"v":9.36e-05,"d":"9.36E-05"},-1.307666533,"down","--","--","--","--","--","--","Pectinesterase 51 (Precursor) GN=F17I14.50 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","--"]
["EVM0010296",0.006340017,0.001206158,1.325876238,"up","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0024777",0.002108628,0.000251319,1.378487044,"up","--","--","Molecular Function: transferase activity, transferring glycosyl groups (GO:0016757);; ","--","[GC]","--","Putative UDP-glucose flavonoid 3-O-glucosyltransferase 3 {ECO:0000250|UniProtKB:Q2V6K0} OS=Fragaria ananassa (Strawberry) PE=2 SV=1","G","Carbohydrate transport and metabolism","--"]
["EVM0015820",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1B-14 GN=R1B-14 OS=Solanum demissum (Wild potato) PE=3 SV=1","T","Signal transduction mechanisms","--"]
["EVM0021050",{"v":4.33e-15,"d":"4.33E-15"},{"v":2.16e-17,"d":"2.16E-17"},-4.227019327,"down","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: ribosome biogenesis (GO:0042254);; ","K14574|0|cit:102611954|ribosome maturation protein SBDS-like; K14574 ribosome maturation protein SDO1 (A)","[J]","Translation, ribosomal structure and biogenesis ","--","J","Translation, ribosomal structure and biogenesis","--"]
["EVM0011803",{"v":9.26e-06,"d":"9.26E-06"},{"v":5.92e-07,"d":"5.92E-07"},2.146060612,"up","--","--","--","--","[R]","General function prediction only ","Pentatricopeptide repeat-containing protein At1g74900, mitochondrial (Precursor) GN=OTP43 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","--"]
["EVM0003924",0.000859097,{"v":8.99e-05,"d":"8.99E-05"},1.605568787,"up","[RTKL]","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; ","K08794|5.9707e-130|sly:543865|PPCK2; phosphoenolpyruvate carboxylase kinase 2; K08794 calcium/calmodulin-dependent protein kinase I [EC:2.7.11.17] (A)","[T]","Signal transduction mechanisms ","Phosphoenolpyruvate carboxylase kinase 1 GN=PPCK1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","T","Signal transduction mechanisms","--"]
["EVM0019000",0.006008258,0.001082884,-3.873231793,"down","--","--","Molecular Function: ubiquitin-protein transferase activity (GO:0004842);; Biological Process: mitochondrion organization (GO:0007005);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: protein ubiquitination (GO:0016567);; ","K15688|0|sot:102601282|mitochondrial ubiquitin ligase activator of nfkb 1-like; K15688 E3 ubiquitin-protein ligase MUL1 [EC:6.3.2.19] (A)","[O]","Posttranslational modification, protein turnover, chaperones ","Probable E3 ubiquitin-protein ligase XBOS34 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","--"]
["Salvia_newGene_81110",{"v":2.33e-05,"d":"2.33E-05"},{"v":1.76e-06,"d":"1.76E-06"},-1.869744972,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1A-6 GN=R1A-6 OS=Solanum demissum (Wild potato) PE=3 SV=2","T","Signal transduction mechanisms","PREDICTED: putative late blight resistance protein homolog R1B-16 [Sesamum indicum]"]
["EVM0026559",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1A-6 GN=R1A-6 OS=Solanum demissum (Wild potato) PE=3 SV=2","T","Signal transduction mechanisms","--"]
["EVM0021446",0.0048876,0.00083828,1.08721942,"up","--","--","Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Biological Process: carbohydrate metabolic process (GO:0005975);; ","--","--","--","Glucan endo-1,3-beta-glucosidase 8 (Precursor) GN=At1g64760 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","R","General function prediction only","--"]
["EVM0017209",0.00084516,{"v":8.6e-05,"d":"8.60E-05"},-1.53399087,"down","--","--","--","--","[R]","General function prediction only ","Putative ribonuclease H protein At1g65750 GN=At1g65750 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1","R","General function prediction only","--"]
["Salvia_newGene_90467",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1A-6 GN=R1A-6 OS=Solanum demissum (Wild potato) PE=3 SV=2","T","Signal transduction mechanisms","PREDICTED: putative late blight resistance protein homolog R1B-16 [Sesamum indicum]"]
["EVM0005304",{"v":4.33e-15,"d":"4.33E-15"},{"v":3.83e-17,"d":"3.83E-17"},3.394700436,"up","[R]","General function prediction only ","Molecular Function: Rab GTPase activator activity (GO:0005097);; Cellular Component: cytosol (GO:0005829);; Biological Process: positive regulation of Rab GTPase activity (GO:0032851);; ","--","[T]","Signal transduction mechanisms ","--","T","Signal transduction mechanisms","--"]
["EVM0004028",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1B-14 GN=R1B-14 OS=Solanum demissum (Wild potato) PE=3 SV=1","T","Signal transduction mechanisms","--"]
["EVM0014029",0.006340017,0.001206158,1.325876238,"up","--","--","--","--","--","--","Protein DYAD GN=MFG13.3 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","S","Function unknown","--"]
["EVM0001511",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1A-6 GN=R1A-6 OS=Solanum demissum (Wild potato) PE=3 SV=2","T","Signal transduction mechanisms","--"]
["EVM0002413",{"v":4.69e-08,"d":"4.69E-08"},{"v":1.23e-09,"d":"1.23E-09"},2.255629445,"up","[C]","Energy production and conversion ","Molecular Function: magnesium ion binding (GO:0000287);; Molecular Function: inorganic diphosphatase activity (GO:0004427);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: phosphate-containing compound metabolic process (GO:0006796);; Cellular Component: membrane (GO:0016020);; ","K01507|2.79667e-137|sly:101264169|soluble inorganic pyrophosphatase; K01507 inorganic pyrophosphatase [EC:3.6.1.1] (A)","[C]","Energy production and conversion ","Soluble inorganic pyrophosphatase GN=IPP OS=Zea mays (Maize) PE=2 SV=1","C","Energy production and conversion","--"]
["EVM0000032",{"v":1.77e-07,"d":"1.77E-07"},{"v":6.8e-09,"d":"6.80E-09"},1.982657973,"up,down","[O]","Posttranslational modification, protein turnover, chaperones ","Molecular Function: threonine-type endopeptidase activity (GO:0004298);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511);; Cellular Component: proteasome core complex, alpha-subunit complex (GO:0019773);; ","K02726|3.54585e-164|sly:101245889|proteasome subunit alpha type-2-A-like; K02726 20S proteasome subunit alpha 2 [EC:3.4.25.1] (A)","[O]","Posttranslational modification, protein turnover, chaperones ","Proteasome subunit alpha type-2-A GN=F3O9.27 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0026566",0.004594858,0.000734643,1.289646579,"up","[R]","General function prediction only ","--","K06892|6.12249e-136|sly:101250319|flavonol synthase/flavanone 3-hydroxylase-like; K06892 feruloyl-CoA ortho-hydroxylase [EC:1.14.11.-] (A)","[QR]","--","Flavonol synthase/flavanone 3-hydroxylase GN=FLS OS=Petroselinum crispum (Parsley) PE=1 SV=1","R","General function prediction only","--"]
["EVM0003087",0.006008258,0.001082884,-3.873231793,"down","[IQR]","--","Molecular Function: nucleotide binding (GO:0000166);; Biological Process: terpenoid biosynthetic process (GO:0016114);; Molecular Function: oxidoreductase activity (GO:0016491);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","11-beta-hydroxysteroid dehydrogenase-like 5 GN=HSD5 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","--"]
["EVM0007147",0.00280583,0.000350729,1.891294437,"up","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0000825",0.00280583,0.000350729,1.891294437,"up","[GER]","--","Cellular Component: membrane (GO:0016020);; ","K15289|0|rcu:RCOM_0923270|hypothetical protein; K15289 solute carrier family 35, member F5 (A)","[S]","Function unknown ","--","S","Function unknown","--"]
["EVM0018327",0.00280583,0.000350729,1.891294437,"up","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: RNA binding (GO:0003723);; Molecular Function: structural constituent of ribosome (GO:0003735);; Cellular Component: nucleus (GO:0005634);; Cellular Component: ribosome (GO:0005840);; Biological Process: rRNA processing (GO:0006364);; Biological Process: translation (GO:0006412);; Biological Process: response to cold (GO:0009409);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: embryo development ending in seed dormancy (GO:0009793);; Biological Process: chloroplast relocation (GO:0009902);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: thylakoid membrane organization (GO:0010027);; Biological Process: photosystem II assembly (GO:0010207);; Biological Process: regulation of protein dephosphorylation (GO:0035304);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: transcription from plastid promoter (GO:0042793);; Biological Process: positive regulation of transcription, DNA-templated (GO:0045893);; ","K02888|1.22911e-53|sly:101250811|50S ribosomal protein L21, chloroplastic; K02888 large subunit ribosomal protein L21 (A)","[J]","Translation, ribosomal structure and biogenesis ","50S ribosomal protein L21, chloroplastic (Precursor) GN=RPL21 OS=Spinacia oleracea (Spinach) PE=1 SV=1","J","Translation, ribosomal structure and biogenesis","--"]
["EVM0024125",0.000870664,{"v":9.36e-05,"d":"9.36E-05"},-1.307666533,"down","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0003676",0.006008258,0.001082884,-3.873231793,"down","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: queuine tRNA-ribosyltransferase activity (GO:0008479);; Biological Process: queuosine biosynthetic process (GO:0008616);; ","K00773|0|csv:101229826|queuine tRNA-ribosyltransferase-like; K00773 queuine tRNA-ribosyltransferase [EC:2.4.2.29] (A)","[A]","RNA processing and modification ","--","A","RNA processing and modification","--"]
["EVM0021617",0.001435248,0.000164806,1.255222109,"up","[O]","Posttranslational modification, protein turnover, chaperones ","Molecular Function: zinc ion binding (GO:0008270);; ","K10601|0|tcc:TCM_041140|RING/U-box superfamily protein; K10601 E3 ubiquitin-protein ligase synoviolin [EC:6.3.2.19] (A)","[O]","Posttranslational modification, protein turnover, chaperones ","ERAD-associated E3 ubiquitin-protein ligase HRD1 {ECO:0000305} OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","--"]
["Salvia_newGene_47568",0.001255966,0.00013874,1.248541407,"up","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1B-17 GN=R1B-17 OS=Solanum demissum (Wild potato) PE=3 SV=1","T","Signal transduction mechanisms","hypothetical protein MIMGU_mgv1a001149mg [Erythranthe guttata]"]
["EVM0013460",0.004594858,0.000734643,1.289646579,"up","[E]","Amino acid transport and metabolism ","Molecular Function: glycine hydroxymethyltransferase activity (GO:0004372);; Cellular Component: mitochondrial respiratory chain complex I (GO:0005747);; Cellular Component: cytosol (GO:0005829);; Biological Process: glycine metabolic process (GO:0006544);; Biological Process: L-serine metabolic process (GO:0006563);; Molecular Function: methyltransferase activity (GO:0008168);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: response to sucrose (GO:0009744);; Biological Process: response to glucose (GO:0009749);; Biological Process: response to fructose (GO:0009750);; Molecular Function: pyridoxal phosphate binding (GO:0030170);; Biological Process: methylation (GO:0032259);; Biological Process: tetrahydrofolate interconversion (GO:0035999);; Molecular Function: cobalt ion binding (GO:0050897);; ","K00600|0|sot:102599354|serine hydroxymethyltransferase, mitochondrial-like; K00600 glycine hydroxymethyltransferase [EC:2.1.2.1] (A)","[E]","Amino acid transport and metabolism ","Serine hydroxymethyltransferase 2, mitochondrial (Precursor) GN=F2P16.40 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","E","Amino acid transport and metabolism","--"]
["EVM0020243",{"v":4.33e-15,"d":"4.33E-15"},{"v":3.83e-17,"d":"3.83E-17"},3.394700436,"up","--","--","--","--","[K]","Transcription ","Agamous-like MADS-box protein AGL62 GN=AGL62 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","S","Function unknown","--"]
["EVM0021670",0.006008258,0.001082884,-3.873231793,"down","[O]","Posttranslational modification, protein turnover, chaperones ","--","--","--","--","Chaperone protein dnaJ 49 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0026168",0.006008258,0.001082884,-3.873231793,"down","--","--","--","--","[R]","General function prediction only ","Pentatricopeptide repeat-containing protein At1g12300, mitochondrial (Precursor) GN=At1g12300 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","--"]
["EVM0011826",{"v":9.26e-06,"d":"9.26E-06"},{"v":5.92e-07,"d":"5.92E-07"},2.146060612,"up","--","--","Molecular Function: inorganic anion exchanger activity (GO:0005452);; Biological Process: anion transport (GO:0006820);; Cellular Component: integral component of membrane (GO:0016021);; ","--","[P]","Inorganic ion transport and metabolism ","Probable boron transporter 2 GN=BOR2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","P","Inorganic ion transport and metabolism","--"]
["EVM0022816",0.000870664,{"v":9.36e-05,"d":"9.36E-05"},-1.575748334,"up,down","--","--","--","--","--","--","--","R","General function prediction only","--"]
["EVM0008924",{"v":9.26e-06,"d":"9.26E-06"},{"v":5.92e-07,"d":"5.92E-07"},2.146060612,"up","[L]","Replication, recombination and repair ","--","K10838|0|sly:101265989|DNA repair protein complementing XP-C cells homolog; K10838 xeroderma pigmentosum group C-complementing protein (A)","[L]","Replication, recombination and repair ","Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","L","Replication, recombination and repair","--"]
["EVM0002289",0.00280583,0.000350729,1.891294437,"up","[RTKL]","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: non-membrane spanning protein tyrosine kinase activity (GO:0004715);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: response to brassinosteroid (GO:0009741);; Biological Process: regulation of unidimensional cell growth (GO:0051510);; ","--","[T]","Signal transduction mechanisms ","Probable receptor-like protein kinase At1g30570 (Precursor) GN=At1g30570 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1","T","Signal transduction mechanisms","--"]
["EVM0014083",{"v":9.26e-06,"d":"9.26E-06"},{"v":5.92e-07,"d":"5.92E-07"},2.146060612,"up","--","--","--","--","--","--","Transcription factor TCP4 GN=K15M2.17 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","K","Transcription","--"]
["EVM0016730",0.0048876,0.00083828,1.08721942,"up","[R]","General function prediction only ","Molecular Function: RNA binding (GO:0003723);; Molecular Function: copper ion binding (GO:0005507);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: protein targeting to mitochondrion (GO:0006626);; Biological Process: pyrimidine ribonucleotide biosynthetic process (GO:0009220);; Biological Process: regulation of flower development (GO:0009909);; Biological Process: vegetative to reproductive phase transition of meristem (GO:0010228);; Biological Process: histone lysine methylation (GO:0034968);; ","K12741|2.29295e-57|vvi:100256940|glycine-rich RNA-binding protein blt801; K12741 heterogeneous nuclear ribonucleoprotein A1/A3 (A)","[R]","General function prediction only ","Glycine-rich RNA-binding protein 3, mitochondrial (Precursor) GN=MAF19_30 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","--"]
["EVM0018769",0.004594858,0.000734643,1.289646579,"up","[G]","Carbohydrate transport and metabolism ","Molecular Function: alpha-amylase activity (GO:0004556);; Molecular Function: calcium ion binding (GO:0005509);; Biological Process: carbohydrate metabolic process (GO:0005975);; Molecular Function: glucan 1,4-alpha-maltotetraohydrolase activity (GO:0033910);; ","K01176|0|pop:POPTR_0002s01570g|POPTRDRAFT_798380; hypothetical protein; K01176 alpha-amylase [EC:3.2.1.1] (A)","[G]","Carbohydrate transport and metabolism ","Probable alpha-amylase 2 GN=AMY2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","G","Carbohydrate transport and metabolism","--"]
["EVM0013532",0.004594858,0.000734643,1.289646579,"up","--","--","Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Cellular Component: cytoplasmic part (GO:0044444);; ","--","--","--","--","S","Function unknown","--"]
["EVM0014163",0.003617439,0.000544916,-1.575748334,"up,down","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0001807",0.004969279,0.000866735,-2.685422322,"down","--","--","--","K07466|1.91532e-27|mtr:MTR_116s0023|Replication protein A 70 kDa DNA-binding subunit; K07466 replication factor A1 (A)","[L]","Replication, recombination and repair ","--","L","Replication, recombination and repair","--"]
["Salvia_newGene_58056",0.006008258,0.001082884,-3.873231793,"down","--","--","Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Molecular Function: binding (GO:0005488);; Biological Process: primary metabolic process (GO:0044238);; Biological Process: organic substance metabolic process (GO:0071704);; ","--","[R]","General function prediction only ","Endonuclease OS=Nicotiana tabacum (Common tobacco) PE=2 SV=1","A","RNA processing and modification","Polyprotein, putative [Solanum demissum]"]
["EVM0000598",0.001435248,0.000164806,1.255222109,"up","[RTKL]","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; ","K07198|0|sly:778276|SNF1; SNF1 protein; K07198 5'-AMP-activated protein kinase, catalytic alpha subunit [EC:2.7.11.11] (A)","[T]","Signal transduction mechanisms ","SNF1-related protein kinase catalytic subunit alpha KIN10 GN=At3g01090 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","T","Signal transduction mechanisms","--"]
["EVM0009976",0.00280583,0.000350729,1.891294437,"up","--","--","--","--","--","--","Squamosa promoter-binding-like protein 17 GN=OsJ_028679 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2","K","Transcription","--"]
["EVM0007851",0.004594858,0.000734643,1.289646579,"up","--","--","--","--","[R]","General function prediction only ","Pentatricopeptide repeat-containing protein At5g08510 GN=PCMP-E20 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","--"]
["EVM0026043",0.006008258,0.001082884,-3.873231793,"down","[O]","Posttranslational modification, protein turnover, chaperones ","Molecular Function: metalloendopeptidase activity (GO:0004222);; Molecular Function: ATP binding (GO:0005524);; Biological Process: proteolysis (GO:0006508);; Cellular Component: membrane (GO:0016020);; Molecular Function: nucleoside-triphosphatase activity (GO:0017111);; Biological Process: protein catabolic process (GO:0030163);; ","K03798|0|sly:101266739|ATP-dependent zinc metalloprotease FTSH 2, chloroplastic; K03798 cell division protease FtsH [EC:3.4.24.-] (A)","[O]","Posttranslational modification, protein turnover, chaperones ","ATP-dependent zinc metalloprotease FTSH 2, chloroplastic (Precursor) GN=F7F1.16 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0014424",{"v":8.08e-06,"d":"8.08E-06"},{"v":4.7e-07,"d":"4.70E-07"},1.894718978,"up","--","--","--","--","[R]","General function prediction only ","Putative pentatricopeptide repeat-containing protein At3g01580 GN=PCMP-E87 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=2","R","General function prediction only","--"]
["EVM0025013",{"v":4.33e-15,"d":"4.33E-15"},{"v":2.16e-17,"d":"2.16E-17"},-4.227019327,"down","--","--","--","K13100|0|sly:101263922|pre-mRNA-splicing factor CWC22 homolog; K13100 pre-mRNA-splicing factor CWC22 (A)","[R]","General function prediction only ","--","R","General function prediction only","--"]
["EVM0022828",0.006008258,0.001082884,-3.873231793,"down","--","--","--","--","--","--","Transcription factor bHLH62 GN=F21O3.5 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","K","Transcription","--"]
["EVM0023874",0.006008258,0.001082884,-3.873231793,"down","--","--","Molecular Function: transporter activity (GO:0005215);; Biological Process: intracellular protein transport (GO:0006886);; Biological Process: ER to Golgi vesicle-mediated transport (GO:0006888);; Molecular Function: zinc ion binding (GO:0008270);; Cellular Component: COPII vesicle coat (GO:0030127);; ","--","[U]","Intracellular trafficking, secretion, and vesicular transport ","Protein transport protein Sec24-like At3g07100 GN=At3g07100 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","U","Intracellular trafficking, secretion, and vesicular transport","--"]
["EVM0008451",0.002882341,0.000370585,-1.202885838,"down","--","--","--","--","[R]","General function prediction only ","Pentatricopeptide repeat-containing protein At1g80270, mitochondrial (Precursor) GN=At1g80270 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","--"]
["EVM0028006",{"v":4.69e-08,"d":"4.69E-08"},{"v":1.23e-09,"d":"1.23E-09"},2.255629445,"up","--","--","Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: auxin-activated signaling pathway (GO:0009734);; Molecular Function: protein dimerization activity (GO:0046983);; ","--","--","--","Auxin response factor 5 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2","K","Transcription","--"]
["EVM0018501",0.0048876,0.00083828,1.08721942,"up","--","--","--","--","--","--","Telomere repeat-binding protein 4 GN=MAC12.23 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","R","General function prediction only","--"]
["EVM0016101",0.003617439,0.000544916,-1.575748334,"up,down","[L]","Replication, recombination and repair ","--","--","--","--","DNA mismatch repair protein MSH3 GN=MSH3 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","L","Replication, recombination and repair","--"]
["Salvia_newGene_89988",0.00280583,0.000350729,1.891294437,"up","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1B-16 GN=R1B-16 OS=Solanum demissum (Wild potato) PE=3 SV=1","T","Signal transduction mechanisms","hypothetical protein MIMGU_mgv1a023729mg [Erythranthe guttata]"]
["EVM0022658",0.003617439,0.000544916,-1.575748334,"up,down","--","--","Molecular Function: protein dimerization activity (GO:0046983);; ","--","--","--","Transcription factor GLABRA 3 GN=At5g41315 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","K","Transcription","--"]
["EVM0015664",0.006008258,0.001082884,-3.873231793,"down","[R]","General function prediction only ","--","K09527|0|vvi:100256902|uncharacterized LOC100256902; K09527 DnaJ homolog subfamily C member 7 (A)","[O]","Posttranslational modification, protein turnover, chaperones ","TPR repeat-containing thioredoxin TTL1 GN=TTL1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0023375",{"v":4.33e-15,"d":"4.33E-15"},{"v":2.16e-17,"d":"2.16E-17"},-4.227019327,"down","[RTKL]","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: cytosol (GO:0005829);; Biological Process: protein phosphorylation (GO:0006468);; ","K08790|0|cit:102610056|serine/threonine-protein kinase tricorner-like; K08790 serine/threonine kinase 38 [EC:2.7.11.1] (A)","[R]","General function prediction only ","Probable serine/threonine protein kinase IREH1 {ECO:0000305} OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","T","Signal transduction mechanisms","--"]
["EVM0016348",0.006340017,0.001206158,1.325876238,"up","--","--","Molecular Function: transferase activity (GO:0016740);; ","--","[GC]","--","Putative UDP-glucose flavonoid 3-O-glucosyltransferase 3 {ECO:0000250|UniProtKB:Q2V6K0} OS=Fragaria ananassa (Strawberry) PE=2 SV=1","S","Function unknown","--"]
["EVM0005713",0.000870664,{"v":9.36e-05,"d":"9.36E-05"},-1.307666533,"down","[RTKL]","--","Molecular Function: protein kinase activity (GO:0004672);; Biological Process: phosphorylation (GO:0016310);; ","--","--","--","LRR receptor-like serine/threonine-protein kinase HSL2 (Precursor) GN=HSL2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","T","Signal transduction mechanisms","--"]
["Salvia_newGene_54663",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1A-6 GN=R1A-6 OS=Solanum demissum (Wild potato) PE=3 SV=2","T","Signal transduction mechanisms","PREDICTED: putative late blight resistance protein homolog R1B-16 [Sesamum indicum]"]
["EVM0005817",0.006008258,0.001082884,-3.873231793,"down","--","--","--","--","[R]","General function prediction only ","--","R","General function prediction only","--"]
["Salvia_newGene_44164",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[R]","General function prediction only ","Putative late blight resistance protein homolog R1B-14 GN=R1B-14 OS=Solanum demissum (Wild potato) PE=3 SV=1","T","Signal transduction mechanisms","hypothetical protein MIMGU_mgv1a001232mg [Erythranthe guttata]"]
["EVM0002796",0.006008258,0.001082884,-3.873231793,"down","--","--","--","K14432|1.2538e-118|sly:101259896|ABSCISIC ACID-INSENSITIVE 5-like protein 2; K14432 ABA responsive element binding factor (A)","--","--","ABSCISIC ACID-INSENSITIVE 5-like protein 2 GN=T8M16_180 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","K","Transcription","--"]
["EVM0023567",0.001255966,0.00013874,1.248541407,"up","[OJ]","--","--","K18757|0|sot:102590409|la-related protein 1-like; K18757 la-related protein 1 (A)","[OJ]","--","La-related protein 1A GN=LARP1A OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0015047",0.006340017,0.001206158,1.325876238,"up","--","--","Biological Process: very long-chain fatty acid metabolic process (GO:0000038);; Cellular Component: endoplasmic reticulum (GO:0005783);; Biological Process: fatty acid biosynthetic process (GO:0006633);; Biological Process: response to cold (GO:0009409);; Biological Process: response to light stimulus (GO:0009416);; Biological Process: unidimensional cell growth (GO:0009826);; Molecular Function: fatty acid elongase activity (GO:0009922);; Biological Process: wax biosynthetic process (GO:0010025);; Cellular Component: membrane (GO:0016020);; Biological Process: cuticle development (GO:0042335);; Biological Process: pollen tube development (GO:0048868);; ","K15397|0|sly:101257332|3-ketoacyl-CoA synthase 6-like; K15397 3-ketoacyl-CoA synthase [EC:2.3.1.199] (A)","--","--","3-ketoacyl-CoA synthase 5 GN=F2J7.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","M","Cell wall/membrane/envelope biogenesis","--"]
["EVM0011412",0.003617439,0.000544916,-1.575748334,"up,down","[KL]","--","Molecular Function: nucleotide binding (GO:0000166);; Molecular Function: nucleic acid binding (GO:0003676);; Molecular Function: ATP-dependent helicase activity (GO:0008026);; ","K11136|0|sly:101249902|RTEL1; regulator of telomere elongation helicase 1; K11136 regulator of telomere elongation helicase 1 [EC:3.6.4.12] (A)","[L]","Replication, recombination and repair ","DNA repair helicase UVH6 GN=F15K9.20 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","L","Replication, recombination and repair","--"]
["EVM0008660",0.00084516,{"v":8.6e-05,"d":"8.60E-05"},-1.53399087,"down","--","--","Molecular Function: organic cyclic compound binding (GO:0097159);; Molecular Function: heterocyclic compound binding (GO:1901363);; ","K15191|6.9077e-125|sly:101245912|la-related protein 6A (A)","[R]","General function prediction only ","La-related protein 6A GN=LARP6A OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","--"]
["EVM0011521",0.004594858,0.000734643,1.289646579,"up","[BK]","--","Molecular Function: transferase activity (GO:0016740);; ","--","[K]","Transcription ","Transcription factor GTE8 GN=GTE8 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","K","Transcription","--"]
["EVM0015209",0.004594858,0.000734643,1.289646579,"up,down","--","--","Biological Process: transcription, DNA-templated (GO:0006351);; Cellular Component: intracellular part (GO:0044424);; ","K09391|1.39691e-136|sot:102579077|E2F transcription factor-like E2FE-like; K09391 transcription factor E2F7/8 (A)","[K]","Transcription ","E2F transcription factor-like E2FE GN=T24C20.40 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","K","Transcription","--"]
["Salvia_newGene_80903",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1A-6 GN=R1A-6 OS=Solanum demissum (Wild potato) PE=3 SV=2","T","Signal transduction mechanisms","hypothetical protein MIMGU_mgv1a021755mg, partial [Erythranthe guttata]"]
["EVM0027980",0.006008258,0.001082884,-3.873231793,"down","[R]","General function prediction only ","Biological Process: mitotic cell cycle (GO:0000278);; Biological Process: cytokinesis by cell plate formation (GO:0000911);; Biological Process: establishment of planar polarity (GO:0001736);; Biological Process: regionalization (GO:0003002);; Molecular Function: ARF guanyl-nucleotide exchange factor activity (GO:0005086);; Cellular Component: endosome (GO:0005768);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: gluconeogenesis (GO:0006094);; Biological Process: endocytosis (GO:0006897);; Biological Process: sister chromatid cohesion (GO:0007062);; Biological Process: cell adhesion (GO:0007155);; Biological Process: unidimensional cell growth (GO:0009826);; Biological Process: longitudinal axis specification (GO:0009942);; Biological Process: primary shoot apical meristem specification (GO:0010072);; Biological Process: phloem or xylem histogenesis (GO:0010087);; Biological Process: trichome morphogenesis (GO:0010090);; Biological Process: vegetative to reproductive phase transition of meristem (GO:0010228);; Molecular Function: GTP:GDP antiporter activity (GO:0010292);; Biological Process: lateral root formation (GO:0010311);; Biological Process: seed maturation (GO:0010431);; Biological Process: proteasomal protein catabolic process (GO:0010498);; Biological Process: basipetal auxin transport (GO:0010540);; Biological Process: cellulose biosynthetic process (GO:0030244);; Biological Process: regulation of ARF protein signal transduction (GO:0032012);; Biological Process: endosome transport via multivesicular body sorting pathway (GO:0032509);; Biological Process: regulation of chromosome organization (GO:0033044);; Molecular Function: protein homodimerization activity (GO:0042803);; Biological Process: actin nucleation (GO:0045010);; Biological Process: regulation of cell differentiation (GO:0045595);; Biological Process: regulation of vesicle targeting, to, from or within Golgi (GO:0048209);; Biological Process: floral organ formation (GO:0048449);; Biological Process: root hair cell differentiation (GO:0048765);; Biological Process: cell wall organization (GO:0071555);; ","K18443|0|rcu:RCOM_0837820|pattern formation protein, putative; K18443 golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 (A)","[U]","Intracellular trafficking, secretion, and vesicular transport ","ARF guanine-nucleotide exchange factor GNOM GN=At1g13980 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","--"]
["Salvia_newGene_54510",{"v":4.33e-15,"d":"4.33E-15"},{"v":2.16e-17,"d":"2.16E-17"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1A-6 GN=R1A-6 OS=Solanum demissum (Wild potato) PE=3 SV=2","T","Signal transduction mechanisms","PREDICTED: putative late blight resistance protein homolog R1B-16 [Sesamum indicum]"]
["EVM0001660",0.000870664,{"v":9.36e-05,"d":"9.36E-05"},-1.307666533,"down","--","--","--","K14315|0|sly:101265714|uncharacterized LOC101265714; K14315 nucleoporin NDC1 (A)","--","--","--","S","Function unknown","--"]
["EVM0009660",{"v":9.26e-06,"d":"9.26E-06"},{"v":5.92e-07,"d":"5.92E-07"},2.146060612,"up","[L]","Replication, recombination and repair ","Molecular Function: nucleic acid binding (GO:0003676);; Molecular Function: catalytic activity (GO:0003824);; Biological Process: DNA metabolic process (GO:0006259);; ","--","[R]","General function prediction only ","RNA-directed DNA polymerase homolog OS=Oenothera berteroana (Bertero&apos;s evening primrose) PE=4 SV=1","R","General function prediction only","--"]
["EVM0024825",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1C-3 GN=R1C-3 OS=Solanum demissum (Wild potato) PE=3 SV=1","T","Signal transduction mechanisms","--"]
["EVM0011454",{"v":9.26e-06,"d":"9.26E-06"},{"v":5.92e-07,"d":"5.92E-07"},2.146060612,"up","--","--","--","--","--","--","Transcription factor TCP24 GN=TCP24 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","K","Transcription","--"]
["EVM0015390",{"v":4.33e-15,"d":"4.33E-15"},{"v":2.16e-17,"d":"2.16E-17"},-4.227019327,"down","[O]","Posttranslational modification, protein turnover, chaperones ","Molecular Function: ATP binding (GO:0005524);; Biological Process: ATP catabolic process (GO:0006200);; Biological Process: protein folding (GO:0006457);; Cellular Component: chloroplast stroma (GO:0009570);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: heat acclimation (GO:0010286);; Molecular Function: ATPase activity (GO:0016887);; Biological Process: response to endoplasmic reticulum stress (GO:0034976);; Biological Process: protein unfolding (GO:0043335);; Biological Process: positive regulation of translation (GO:0045727);; ","K03695|0|vvi:100232966|HSP101; heat shock protein 101; K03695 ATP-dependent Clp protease ATP-binding subunit ClpB (A)","[O]","Posttranslational modification, protein turnover, chaperones ","Chaperone protein ClpB1 GN=F1O17.2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","O","Posttranslational modification, protein turnover, chaperones","--"]
["Salvia_newGene_53770",0.001435248,0.000164806,1.255222109,"up","--","--","Molecular Function: carboxylic ester hydrolase activity (GO:0004091);; Cellular Component: extracellular region (GO:0005576);; Biological Process: lipid metabolic process (GO:0006629);; ","--","--","--","GDSL esterase/lipase At5g33370 (Precursor) GN=At5g33370 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","hypothetical protein MIMGU_mgv1a008648mg [Erythranthe guttata]"]
["EVM0002760",{"v":6.97e-07,"d":"6.97E-07"},{"v":3.45e-08,"d":"3.45E-08"},-3.330263518,"down","--","--","--","--","--","--","Formin-like protein 13 GN=FH13 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=3","R","General function prediction only","--"]
["EVM0008793",0.000859097,{"v":8.99e-05,"d":"8.99E-05"},1.605568787,"up","--","--","--","--","[T]","Signal transduction mechanisms ","Rho GTPase-activating protein 1 GN=ROPGAP1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","T","Signal transduction mechanisms","--"]
["EVM0004455",0.0048876,0.00083828,1.08721942,"up","--","--","--","--","[GC]","--","UDP-glycosyltransferase 86A1 GN=UGT86A1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","G","Carbohydrate transport and metabolism","--"]
["EVM0027193",{"v":8.08e-06,"d":"8.08E-06"},{"v":4.7e-07,"d":"4.70E-07"},1.894718978,"up","--","--","--","--","[R]","General function prediction only ","Pentatricopeptide repeat-containing protein At1g51965, mitochondrial (Precursor) GN=At1g51965 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","--"]
["EVM0026513",0.006340017,0.001206158,1.325876238,"up","--","--","--","--","--","--","--","R","General function prediction only","--"]
["EVM0013443",0.000870664,{"v":9.36e-05,"d":"9.36E-05"},-1.307666533,"down","[P]","Inorganic ion transport and metabolism ","Cellular Component: plasma membrane (GO:0005886);; Molecular Function: ammonium transmembrane transporter activity (GO:0008519);; Biological Process: response to nematode (GO:0009624);; Biological Process: myo-inositol hexakisphosphate biosynthetic process (GO:0010264);; Biological Process: methylammonium transport (GO:0015843);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: ammonium transmembrane transport (GO:0072488);; ","K03320|0|sot:102578704|ammonium transporter 1 member 2-like; K03320 ammonium transporter, Amt family (A)","[P]","Inorganic ion transport and metabolism ","Ammonium transporter 1 member 2 GN=AMT1-2 OS=Solanum lycopersicum (Tomato) PE=2 SV=1","P","Inorganic ion transport and metabolism","--"]
["EVM0014566",{"v":6.97e-07,"d":"6.97E-07"},{"v":3.45e-08,"d":"3.45E-08"},-3.330263518,"down","[J]","Translation, ribosomal structure and biogenesis ","--","K14565|0|sly:101255995|probable nucleolar protein 5-2; K14565 nucleolar protein 58 (A)","[AJ]","--","Probable nucleolar protein 5-1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","J","Translation, ribosomal structure and biogenesis","--"]
["EVM0011285",0.003617439,0.000544916,-1.575748334,"up,down","--","--","Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: auxin-activated signaling pathway (GO:0009734);; Molecular Function: protein dimerization activity (GO:0046983);; ","--","--","--","Auxin response factor 6 OS=Oryza sativa subsp. japonica (Rice) PE=1 SV=1","K","Transcription","--"]
["EVM0015813",{"v":4.69e-08,"d":"4.69E-08"},{"v":1.23e-09,"d":"1.23E-09"},2.255629445,"up","--","--","Molecular Function: fatty-acyl-CoA binding (GO:0000062);; ","--","[R]","General function prediction only ","Acyl-CoA-binding domain-containing protein 4 GN=ACBP4 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","I","Lipid transport and metabolism","--"]
["EVM0016204",0.006008258,0.001082884,-3.873231793,"down","[RTKL]","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: signal transduction (GO:0007165);; ","--","[T]","Signal transduction mechanisms ","CBL-interacting protein kinase 2 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","T","Signal transduction mechanisms","--"]
["EVM0027166",{"v":4.69e-08,"d":"4.69E-08"},{"v":1.23e-09,"d":"1.23E-09"},2.255629445,"up","[RTKL]","--","--","--","--","--","Leucine-rich repeat receptor-like protein kinase TDR (Precursor) GN=TDR OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","T","Signal transduction mechanisms","--"]
["Salvia_newGene_54789",0.006008258,0.001082884,-3.873231793,"down","--","--","--","--","[R]","General function prediction only ","Pentatricopeptide repeat-containing protein At3g22470, mitochondrial (Precursor) GN=At3g22470 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","hypothetical protein JCGZ_24350 [Jatropha curcas]"]
["EVM0020474",{"v":8.08e-06,"d":"8.08E-06"},{"v":4.7e-07,"d":"4.70E-07"},1.894718978,"up,down","--","--","Biological Process: nuclear-transcribed mRNA catabolic process (GO:0000956);; Biological Process: response to high light intensity (GO:0009644);; Molecular Function: amino acid binding (GO:0016597);; Biological Process: response to hydrogen peroxide (GO:0042542);; ","--","--","--","ACT domain-containing protein ACR10 {ECO:0000305} OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","--"]
["EVM0017731",{"v":4.69e-08,"d":"4.69E-08"},{"v":1.23e-09,"d":"1.23E-09"},2.255629445,"up","[RTKL]","--","Biological Process: cellular process (GO:0009987);; Molecular Function: kinase activity (GO:0016301);; ","--","--","--","G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 (Precursor) GN=At4g27290 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=4","T","Signal transduction mechanisms","--"]
["EVM0003464",{"v":4.33e-15,"d":"4.33E-15"},{"v":2.16e-17,"d":"2.16E-17"},-4.227019327,"down","[K]","Transcription ","Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: protein dimerization activity (GO:0046983);; ","--","[K]","Transcription ","MADS-box protein SOC1 GN=F17K2.19 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","K","Transcription","--"]
["EVM0012733",0.004594858,0.000734643,1.289646579,"up","--","--","--","K15559|3.57515e-176|tcc:TCM_017274|ENTH/VHS family protein isoform 1; K15559 regulator of Ty1 transposition protein 103 (A)","[A]","RNA processing and modification ","--","A","RNA processing and modification","--"]
["Salvia_newGene_4905",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Probable disease resistance protein At1g58390 GN=At1g58390 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=4","T","Signal transduction mechanisms","PREDICTED: putative disease resistance protein At1g50180 [Sesamum indicum]"]
["EVM0023410",0.003617439,0.000544916,-1.575748334,"up,down","--","--","Molecular Function: binding (GO:0005488);; ","--","--","--","--","--","--","--"]
["EVM0002979",0.002882341,0.000370585,-1.202885838,"down","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0000466",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1B-14 GN=R1B-14 OS=Solanum demissum (Wild potato) PE=3 SV=1","T","Signal transduction mechanisms","--"]
["EVM0023691",0.0048876,0.00083828,1.08721942,"up","[O]","Posttranslational modification, protein turnover, chaperones ","Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511);; Biological Process: response to red or far red light (GO:0009639);; Biological Process: embryo development ending in seed dormancy (GO:0009793);; Biological Process: positive regulation of flower development (GO:0009911);; Biological Process: endosperm development (GO:0009960);; Cellular Component: cullin-RING ubiquitin ligase complex (GO:0031461);; Molecular Function: ubiquitin protein ligase binding (GO:0031625);; ","K03869|0|sly:101248999|cullin-3A; K03869 cullin 3 (A)","[D]","Cell cycle control, cell division, chromosome partitioning ","Cullin-3A GN=T2P11.2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0000928",0.001255966,0.00013874,1.248541407,"up","[E]","Amino acid transport and metabolism ","Molecular Function: aspartate kinase activity (GO:0004072);; Molecular Function: homoserine dehydrogenase activity (GO:0004412);; Biological Process: purine nucleotide biosynthetic process (GO:0006164);; Biological Process: aspartate family amino acid biosynthetic process (GO:0009067);; Cellular Component: chloroplast stroma (GO:0009570);; Molecular Function: amino acid binding (GO:0016597);; Molecular Function: NADP binding (GO:0050661);; Biological Process: oxidation-reduction process (GO:0055114);; ","K12524|0|sot:102583425|bifunctional aspartokinase/homoserine dehydrogenase, chloroplastic-like; K12524 bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3] (A)","--","--","Homoserine dehydrogenase (Precursor; Fragment) OS=Daucus carota (Wild carrot) PE=1 SV=1","E","Amino acid transport and metabolism","--"]
["EVM0007429",0.003617439,0.000544916,-1.575748334,"up,down","--","--","--","--","[K]","Transcription ","Mediator of RNA polymerase II transcription subunit 12 GN=F5I10.24 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","K","Transcription","--"]
["EVM0010894",0.004594858,0.000734643,1.289646579,"up","[V]","Defense mechanisms ","--","--","[R]","General function prediction only ","MATE efflux family protein 1 GN=F11M15.20 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","R","General function prediction only","--"]
["EVM0014117",0.006340017,0.001206158,1.325876238,"up","--","--","--","--","--","--","C2 and GRAM domain-containing protein At1g03370 GN=At1g03370 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=4","R","General function prediction only","--"]
["EVM0015808",0.00280583,0.000350729,1.891294437,"up","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0000297",{"v":9.26e-06,"d":"9.26E-06"},{"v":5.92e-07,"d":"5.92E-07"},2.146060612,"up","--","--","Biological Process: developmental process (GO:0032502);; ","--","--","--","Transcription factor TCP4 GN=K15M2.17 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","K","Transcription","--"]
["EVM0008358",{"v":8.08e-06,"d":"8.08E-06"},{"v":4.7e-07,"d":"4.70E-07"},1.894718978,"up","--","--","Biological Process: metabolic process (GO:0008152);; Molecular Function: amino acid binding (GO:0016597);; ","--","--","--","ACT domain-containing protein ACR10 {ECO:0000305} OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","--"]
["EVM0018392",{"v":8.08e-06,"d":"8.08E-06"},{"v":4.7e-07,"d":"4.70E-07"},1.894718978,"up","--","--","--","--","[R]","General function prediction only ","Putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial (Precursor) GN=At5g08310 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1","R","General function prediction only","--"]
["Salvia_newGene_66432",{"v":1.77e-07,"d":"1.77E-07"},{"v":6.8e-09,"d":"6.80E-09"},1.982657973,"up","--","--","--","--","--","--","--","S","Function unknown","hypothetical protein MIMGU_mgv1a021638mg [Erythranthe guttata]"]
["EVM0022752",0.003305481,0.000451621,-1.575748334,"up,down","[G]","Carbohydrate transport and metabolism ","Molecular Function: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity (GO:0004801);; Biological Process: carbohydrate metabolic process (GO:0005975);; Biological Process: acetyl-CoA metabolic process (GO:0006084);; Molecular Function: zinc ion binding (GO:0008270);; Cellular Component: chloroplast stroma (GO:0009570);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: sterol biosynthetic process (GO:0016126);; Biological Process: brassinosteroid biosynthetic process (GO:0016132);; Biological Process: cysteine biosynthetic process (GO:0019344);; ","K00616|0|sot:102581220|probable transaldolase-like; K00616 transaldolase [EC:2.2.1.2] (A)","[G]","Carbohydrate transport and metabolism ","--","G","Carbohydrate transport and metabolism","--"]
["EVM0010741",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1A-6 GN=R1A-6 OS=Solanum demissum (Wild potato) PE=3 SV=2","T","Signal transduction mechanisms","--"]
["EVM0019390",0.006008258,0.001082884,-3.873231793,"down","--","--","--","--","[R]","General function prediction only ","Pentatricopeptide repeat-containing protein At1g62930, chloroplastic (Precursor) GN=At1g62930 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","R","General function prediction only","--"]
["Salvia_newGene_50634",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1A-6 GN=R1A-6 OS=Solanum demissum (Wild potato) PE=3 SV=2","T","Signal transduction mechanisms","hypothetical protein MIMGU_mgv1a023991mg [Erythranthe guttata]"]
["EVM0016323",{"v":4.33e-15,"d":"4.33E-15"},{"v":2.16e-17,"d":"2.16E-17"},-4.227019327,"down","--","--","--","--","[R]","General function prediction only ","F-box/kelch-repeat protein SKIP4 GN=SKIP4 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","R","General function prediction only","--"]
["EVM0013947",0.003617439,0.000544916,-1.575748334,"up,down","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0004543",{"v":1.77e-07,"d":"1.77E-07"},{"v":6.8e-09,"d":"6.80E-09"},1.982657973,"up","--","--","--","--","--","--","Probable purine permease 11 GN=PUP11 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","S","Function unknown","--"]
["EVM0004648",0.006008258,0.001082884,-3.873231793,"down","--","--","--","--","[R]","General function prediction only ","Pentatricopeptide repeat-containing protein At5g39350 GN=PCMP-E16 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","--"]
["EVM0006601",{"v":9.26e-06,"d":"9.26E-06"},{"v":5.92e-07,"d":"5.92E-07"},2.146060612,"up","--","--","--","K11000|0|sly:101249601|callose synthase 11-like; K11000 callose synthase [EC:2.4.1.-] (A)","[M]","Cell wall/membrane/envelope biogenesis ","Callose synthase 11 GN=T32N4.8 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","M","Cell wall/membrane/envelope biogenesis","--"]
["EVM0026475",0.000870664,{"v":9.36e-05,"d":"9.36E-05"},-1.307666533,"down","--","--","Molecular Function: structural molecule activity (GO:0005198);; Cellular Component: cytosol (GO:0005829);; Biological Process: N-terminal protein myristoylation (GO:0006499);; Biological Process: intracellular protein transport (GO:0006886);; Biological Process: ER to Golgi vesicle-mediated transport (GO:0006888);; Biological Process: Golgi organization (GO:0007030);; Biological Process: vacuole organization (GO:0007033);; Cellular Component: clathrin coat of trans-Golgi network vesicle (GO:0030130);; Cellular Component: clathrin coat of coated pit (GO:0030132);; Biological Process: amino acid import (GO:0043090);; ","--","--","--","Clathrin light chain 1 GN=At2g20760 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","--"]
["Salvia_newGene_39420",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1A-6 GN=R1A-6 OS=Solanum demissum (Wild potato) PE=3 SV=2","T","Signal transduction mechanisms","hypothetical protein MIMGU_mgv1a023991mg [Erythranthe guttata]"]
["EVM0016389",{"v":4.19e-06,"d":"4.19E-06"},{"v":2.31e-07,"d":"2.31E-07"},-1.90409282,"down","[R]","General function prediction only ","Molecular Function: oxidoreductase activity (GO:0016491);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","[R]","General function prediction only ","Non-functional NADPH-dependent codeinone reductase 2 GN=COR2 OS=Papaver somniferum (Opium poppy) PE=1 SV=1","R","General function prediction only","--"]
["EVM0020090",{"v":4.33e-15,"d":"4.33E-15"},{"v":3.83e-17,"d":"3.83E-17"},3.394700436,"up","[T]","Signal transduction mechanisms ","Molecular Function: phosphoprotein phosphatase activity (GO:0004721);; Biological Process: rRNA processing (GO:0006364);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: thylakoid membrane organization (GO:0010027);; Biological Process: regulation of proton transport (GO:0010155);; Biological Process: photosystem II assembly (GO:0010207);; Biological Process: peptidyl-threonine dephosphorylation (GO:0035970);; Biological Process: protein autophosphorylation (GO:0046777);; Biological Process: cellular response to light stimulus (GO:0071482);; ","K17508|4.82131e-125|tcc:TCM_042221|Phosphatase 2C family protein isoform 1; K17508 protein phosphatase 2C homolog 7 [EC:3.1.3.16] (A)","[T]","Signal transduction mechanisms ","Probable protein phosphatase 2C 1 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","T","Signal transduction mechanisms","--"]
["EVM0026366",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1B-17 GN=R1B-17 OS=Solanum demissum (Wild potato) PE=3 SV=1","T","Signal transduction mechanisms","--"]
["EVM0011192",{"v":1.22e-07,"d":"1.22E-07"},{"v":3.56e-09,"d":"3.56E-09"},2.01139798,"up","[S]","Function unknown ","Molecular Function: purine ribonucleoside binding (GO:0032550);; Molecular Function: purine ribonucleotide binding (GO:0032555);; Molecular Function: purine ribonucleoside triphosphate binding (GO:0035639);; ","--","--","--","Uncharacterized protein ycf45 GN=ycf45 OS=Porphyra purpurea (Red seaweed) PE=3 SV=1","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0014622",{"v":1.22e-07,"d":"1.22E-07"},{"v":3.56e-09,"d":"3.56E-09"},2.01139798,"up","[J]","Translation, ribosomal structure and biogenesis ","Cellular Component: intracellular (GO:0005622);; ","K02966|5.5009e-60|rcu:RCOM_0524820|40S ribosomal protein S19, putative; K02966 small subunit ribosomal protein S19e (A)","[J]","Translation, ribosomal structure and biogenesis ","40S ribosomal protein S19-1 GN=RPS19A OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","J","Translation, ribosomal structure and biogenesis","--"]
["EVM0017265",0.001435248,0.000164806,1.255222109,"up","--","--","--","--","--","--","Protein FAR-RED IMPAIRED RESPONSE 1 GN=FAR1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","S","Function unknown","--"]
["EVM0001016",0.006008258,0.001082884,-3.873231793,"down","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0022916",{"v":6.97e-07,"d":"6.97E-07"},{"v":3.45e-08,"d":"3.45E-08"},-3.330263518,"down","--","--","--","--","[R]","General function prediction only ","Pentatricopeptide repeat-containing protein At4g38150 GN=At4g38150 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","--"]
["EVM0012740",0.003617439,0.000544916,-1.575748334,"up,down","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0026444",{"v":4.33e-15,"d":"4.33E-15"},{"v":3.83e-17,"d":"3.83E-17"},3.394700436,"up","--","--","--","--","[R]","General function prediction only ","Auxilin-like protein 1 GN=AUL1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0021358",0.004594858,0.000734643,1.289646579,"up","[G]","Carbohydrate transport and metabolism ","Molecular Function: 6-phosphofructokinase activity (GO:0003872);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: 6-phosphofructokinase complex (GO:0005945);; Biological Process: fructose 6-phosphate metabolic process (GO:0006002);; Biological Process: glycolytic process (GO:0006096);; Biological Process: phosphorylation (GO:0016310);; Molecular Function: diphosphate-fructose-6-phosphate 1-phosphotransferase activity (GO:0047334);; ","K00895|0|tcc:TCM_030310|Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta isoform 1; K00895 pyrophosphate--fructose-6-phosphate 1-phosphotransferase [EC:2.7.1.90] (A)","[G]","Carbohydrate transport and metabolism ","Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta {ECO:0000255|HAMAP-Rule:MF_03185} OS=Ricinus communis (Castor bean) PE=3 SV=1","G","Carbohydrate transport and metabolism","--"]
["EVM0018419",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1A-6 GN=R1A-6 OS=Solanum demissum (Wild potato) PE=3 SV=2","T","Signal transduction mechanisms","--"]
["EVM0019401",0.0048876,0.00083828,1.08721942,"up","[RTKL]","--","--","--","--","--","Receptor-like serine/threonine-protein kinase SD1-8 (Precursor) GN=T6K22.110 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","T","Signal transduction mechanisms","--"]
["EVM0013888",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1A-6 GN=R1A-6 OS=Solanum demissum (Wild potato) PE=3 SV=2","T","Signal transduction mechanisms","--"]
["EVM0027321",0.006340017,0.001203061,1.322619076,"up","--","--","Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Biological Process: carbohydrate metabolic process (GO:0005975);; ","--","--","--","--","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0025541",{"v":9.26e-06,"d":"9.26E-06"},{"v":5.92e-07,"d":"5.92E-07"},2.146060612,"up","--","--","--","--","[T]","Signal transduction mechanisms ","Cytochrome b561 and DOMON domain-containing protein At3g61750 (Precursor) GN=At3g61750 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1","T","Signal transduction mechanisms","--"]
["EVM0001600",0.006340017,0.001206158,1.325876238,"up","[R]","General function prediction only ","--","--","--","--","--","T","Signal transduction mechanisms","--"]
["EVM0026545",{"v":1.77e-07,"d":"1.77E-07"},{"v":6.8e-09,"d":"6.80E-09"},1.982657973,"up","--","--","Molecular Function: peptidase activity (GO:0008233);; Biological Process: primary metabolic process (GO:0044238);; Biological Process: organic substance metabolic process (GO:0071704);; ","--","[O]","Posttranslational modification, protein turnover, chaperones ","Protein ASPARTIC PROTEASE IN GUARD CELL 1 (Precursor) GN=ASPG1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0009713",0.004594858,0.000734643,1.289646579,"up","--","--","--","--","--","--","Transcription factor IBH1 OS=Oryza sativa subsp. indica (Rice) PE=3 SV=1","K","Transcription","--"]
["EVM0027351",0.006340017,0.001203061,1.325876238,"up","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Molecular Function: oxidoreductase activity (GO:0016491);; Molecular Function: metal ion binding (GO:0046872);; ","--","[QI]","--","Cytochrome P450 CYP72A219 OS=Panax ginseng (Korean ginseng) PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","--"]
["EVM0007772",0.006008258,0.001082884,-3.873231793,"down","[J]","Translation, ribosomal structure and biogenesis ","--","K03680|0|sot:102583562|translation initiation factor eIF-2B subunit delta-like; K03680 translation initiation factor eIF-2B subunit delta (A)","[J]","Translation, ribosomal structure and biogenesis ","--","J","Translation, ribosomal structure and biogenesis","--"]
["EVM0022806",0.000859097,{"v":8.99e-05,"d":"8.99E-05"},1.605568787,"up","--","--","Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: auxin-activated signaling pathway (GO:0009734);; Molecular Function: protein dimerization activity (GO:0046983);; ","--","--","--","Auxin response factor 19 GN=T29M8.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","K","Transcription","--"]
["EVM0024563",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1A-6 GN=R1A-6 OS=Solanum demissum (Wild potato) PE=3 SV=2","T","Signal transduction mechanisms","--"]
["EVM0027751",{"v":4.69e-08,"d":"4.69E-08"},{"v":1.23e-09,"d":"1.23E-09"},2.255629445,"up","--","--","Cellular Component: nucleus (GO:0005634);; Biological Process: nucleosome assembly (GO:0006334);; ","K11279|1.01905e-159|vvi:100267878|nucleosome assembly protein 1;4-like; K11279 nucleosome assembly protein 1-like 1 (A)","[BD]","--","Nucleosome assembly protein 1;2 (Precursor) GN=NAP1;2 OS=Nicotiana tabacum (Common tobacco) PE=1 SV=1","D","Cell cycle control, cell division, chromosome partitioning","--"]
["EVM0014517",{"v":4.33e-15,"d":"4.33E-15"},{"v":3.83e-17,"d":"3.83E-17"},3.394700436,"up","[T]","Signal transduction mechanisms ","Molecular Function: phosphoprotein phosphatase activity (GO:0004721);; Biological Process: rRNA processing (GO:0006364);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: thylakoid membrane organization (GO:0010027);; Biological Process: regulation of proton transport (GO:0010155);; Biological Process: photosystem II assembly (GO:0010207);; Biological Process: peptidyl-threonine dephosphorylation (GO:0035970);; Biological Process: protein autophosphorylation (GO:0046777);; Biological Process: cellular response to light stimulus (GO:0071482);; ","K17508|2.18723e-124|tcc:TCM_042221|Phosphatase 2C family protein isoform 1; K17508 protein phosphatase 2C homolog 7 [EC:3.1.3.16] (A)","[T]","Signal transduction mechanisms ","Probable protein phosphatase 2C 1 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","T","Signal transduction mechanisms","--"]
["EVM0026686",{"v":4.69e-08,"d":"4.69E-08"},{"v":1.23e-09,"d":"1.23E-09"},2.255629445,"up","[I]","Lipid transport and metabolism ","Cellular Component: membrane (GO:0016020);; Biological Process: single-organism metabolic process (GO:0044710);; Molecular Function: transition metal ion binding (GO:0046914);; ","--","[I]","Lipid transport and metabolism ","Fatty acid 2-hydroxylase 1 GN=FAH1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","I","Lipid transport and metabolism","--"]
["Salvia_newGene_80909",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1A-4 GN=R1A-4 OS=Solanum demissum (Wild potato) PE=5 SV=2","T","Signal transduction mechanisms","hypothetical protein MIMGU_mgv1a025953mg [Erythranthe guttata]"]
["Salvia_newGene_54548",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1B-17 GN=R1B-17 OS=Solanum demissum (Wild potato) PE=3 SV=1","T","Signal transduction mechanisms","hypothetical protein MIMGU_mgv1a001232mg [Erythranthe guttata]"]
["EVM0008991",0.0048876,0.00083828,1.08721942,"up","--","--","--","--","--","--","Probable WRKY transcription factor 19 GN=WRKY19 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","--"]
["EVM0009154",0.006008258,0.001082884,-3.873231793,"down","[P]","Inorganic ion transport and metabolism ","Biological Process: cellular metal ion homeostasis (GO:0006875);; Molecular Function: inorganic anion transmembrane transporter activity (GO:0015103);; Biological Process: inorganic anion transport (GO:0015698);; Cellular Component: membrane (GO:0016020);; Biological Process: metal ion transport (GO:0030001);; Molecular Function: metal ion transmembrane transporter activity (GO:0046873);; ","K12347|0|pvu:PHAVU_009G069700g|hypothetical protein; K12347 natural resistance-associated macrophage protein (A)","[P]","Inorganic ion transport and metabolism ","Metal transporter Nramp2 GN=NRAMP2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","P","Inorganic ion transport and metabolism","--"]
["EVM0012093",0.006340017,0.001203061,1.325876238,"up","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","--","--","[QI]","--","Cytochrome P450 CYP749A22 OS=Panax ginseng (Korean ginseng) PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","--"]
["EVM0009552",0.000429328,{"v":4.12e-05,"d":"4.12E-05"},-1.334295441,"down","--","--","Molecular Function: translation initiation factor activity (GO:0003743);; Biological Process: translational initiation (GO:0006413);; Cellular Component: membrane (GO:0016020);; Biological Process: RNA metabolic process (GO:0016070);; ","--","[J]","Translation, ribosomal structure and biogenesis ","--","J","Translation, ribosomal structure and biogenesis","--"]
["EVM0015672",{"v":4.69e-08,"d":"4.69E-08"},{"v":1.23e-09,"d":"1.23E-09"},2.255629445,"up","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0012870",0.001435248,0.000164806,1.255222109,"up","--","--","--","--","--","--","Basic leucine zipper 43 GN=BZIP43 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","K","Transcription","--"]
["EVM0010690",0.006008258,0.001082884,-3.873231793,"down","[S]","Function unknown ","Biological Process: apoptotic process (GO:0006915);; Biological Process: metabolic process (GO:0008152);; Cellular Component: intracellular part (GO:0044424);; ","--","[S]","Function unknown ","Anamorsin homolog {ECO:0000255|HAMAP-Rule:MF_03115} OS=Vitis vinifera (Grape) PE=3 SV=1","S","Function unknown","--"]
["EVM0004413",0.001435248,0.000164806,1.255222109,"up","[R]","General function prediction only ","Molecular Function: ATP binding (GO:0005524);; Molecular Function: zinc ion binding (GO:0008270);; Cellular Component: plant-type cell wall (GO:0009505);; Molecular Function: nucleoside-triphosphatase activity (GO:0017111);; ","K17681|0|cmo:103501072|ATPase family AAA domain-containing protein 3-B; K17681 ATPase family AAA domain-containing protein 3A/B (A)","[O]","Posttranslational modification, protein turnover, chaperones ","26S protease regulatory subunit 6A homolog GN=TBP1 OS=Solanum lycopersicum (Tomato) PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0026514",{"v":2.33e-05,"d":"2.33E-05"},{"v":1.76e-06,"d":"1.76E-06"},-1.869744972,"down","[Z]","Cytoskeleton ","--","K10400|0|sot:102599317|kinesin-like protein KIN12B-like; K10400 kinesin family member 15 (A)","--","--","Kinesin-like protein KIN12B GN=MDB19.16 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","Z","Cytoskeleton","--"]
["EVM0000425",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1B-17 GN=R1B-17 OS=Solanum demissum (Wild potato) PE=3 SV=1","T","Signal transduction mechanisms","--"]
["EVM0008176",0.004594858,0.000734643,1.289646579,"up","--","--","--","--","--","--","F-box/kelch-repeat protein At3g06240 GN=At3g06240 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","--"]
["EVM0011666",{"v":4.69e-08,"d":"4.69E-08"},{"v":1.23e-09,"d":"1.23E-09"},2.255629445,"up","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Molecular Function: copper ion binding (GO:0005507);; Molecular Function: L-ascorbate oxidase activity (GO:0008447);; Biological Process: lignin catabolic process (GO:0046274);; Cellular Component: apoplast (GO:0048046);; Molecular Function: hydroquinone:oxygen oxidoreductase activity (GO:0052716);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Laccase-3 (Precursor) GN=LAC3 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","Q","Secondary metabolites biosynthesis, transport and catabolism","--"]
["Salvia_newGene_81975",0.001435248,0.000164806,1.255222109,"up","--","--","--","--","--","--","--","R","General function prediction only","PREDICTED: uncharacterized protein LOC105155919 [Sesamum indicum]"]
["EVM0014474",{"v":9.26e-06,"d":"9.26E-06"},{"v":5.92e-07,"d":"5.92E-07"},2.146060612,"up","--","--","Molecular Function: rDNA binding (GO:0000182);; Molecular Function: translation initiation factor activity (GO:0003743);; Biological Process: DNA-templated transcription, initiation (GO:0006352);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: translational initiation (GO:0006413);; Molecular Function: zinc ion binding (GO:0008270);; Cellular Component: plastid outer membrane (GO:0009527);; Biological Process: stomatal lineage progression (GO:0010440);; Molecular Function: TBP-class protein binding (GO:0017025);; ","K03124|0|pvu:PHAVU_002G028900g|hypothetical protein; K03124 transcription initiation factor TFIIB (A)","[K]","Transcription ","Transcription initiation factor IIB OS=Oryza sativa subsp. japonica (Rice) PE=1 SV=1","K","Transcription","--"]
["Salvia_newGene_54452",0.001255966,0.00013874,1.248541407,"up","--","--","--","K13457|3.28753e-79|tcc:TCM_047010|Disease resistance protein family, putative isoform 1; K13457 disease resistance protein RPM1 (A)","[T]","Signal transduction mechanisms ","Disease resistance RPP8-like protein 3 GN=RPP8L3 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","T","Signal transduction mechanisms","hypothetical protein MIMGU_mgv1a023055mg [Erythranthe guttata]"]
["EVM0003663",{"v":4.33e-15,"d":"4.33E-15"},{"v":2.16e-17,"d":"2.16E-17"},-4.227019327,"down","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Molecular Function: iron ion binding (GO:0005506);; Molecular Function: steroid hydroxylase activity (GO:0008395);; Molecular Function: electron carrier activity (GO:0009055);; Biological Process: leaf morphogenesis (GO:0009965);; Biological Process: brassinosteroid biosynthetic process (GO:0016132);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen (GO:0016709);; Molecular Function: oxygen binding (GO:0019825);; Molecular Function: heme binding (GO:0020037);; Biological Process: monopolar cell growth (GO:0042814);; Biological Process: petal development (GO:0048441);; Biological Process: stamen development (GO:0048443);; Biological Process: oxidation-reduction process (GO:0055114);; ","K12637|0|tcc:TCM_000287|Cytochrome P450 superfamily protein; K12637 3-epi-6-deoxocathasterone 23-monooxygenase [EC:1.14.13.112] (A)","[QI]","--","3-epi-6-deoxocathasterone 23-monooxygenase OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=3","Q","Secondary metabolites biosynthesis, transport and catabolism","--"]
["EVM0015497",0.006340017,0.001206158,1.325876238,"up","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Molecular Function: oxidoreductase activity (GO:0016491);; Molecular Function: metal ion binding (GO:0046872);; ","--","[QI]","--","Cytochrome P450 CYP72A219 OS=Panax ginseng (Korean ginseng) PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","--"]
["EVM0000324",0.006008258,0.001082884,-3.873231793,"down","--","--","--","--","--","--","Protein WAVE-DAMPENED 2 GN=WVD2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","--"]
["EVM0002579",0.001435248,0.000164806,1.255222109,"up","--","--","Biological Process: response to chitin (GO:0010200);; Biological Process: cellular response to hypoxia (GO:0071456);; ","--","--","--","--","S","Function unknown","--"]
["EVM0016711",{"v":4.33e-15,"d":"4.33E-15"},{"v":3.83e-17,"d":"3.83E-17"},3.394700436,"up","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0011772",0.004969279,0.000866735,-2.685422322,"down","[L]","Replication, recombination and repair ","--","--","[D]","Cell cycle control, cell division, chromosome partitioning ","--","D","Cell cycle control, cell division, chromosome partitioning","--"]
["EVM0014104",0.006008258,0.001082884,-3.873231793,"down","[T]","Signal transduction mechanisms ","Molecular Function: phosphoprotein phosphatase activity (GO:0004721);; ","K06269|0|sot:102590757|serine/threonine-protein phosphatase PP1 isozyme 3-like; K06269 serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] (A)","[TR]","--","Serine/threonine-protein phosphatase PP1 isozyme 4 GN=TOPP4 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","T","Signal transduction mechanisms","--"]
["EVM0009091",0.004594858,0.000734643,1.289646579,"up","[RTKL]","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: transmembrane receptor protein tyrosine kinase signaling pathway (GO:0007169);; Biological Process: lignin metabolic process (GO:0009808);; Biological Process: pollen germination (GO:0009846);; Biological Process: longitudinal axis specification (GO:0009942);; Biological Process: radial axis specification (GO:0009945);; Biological Process: meristem maintenance (GO:0010073);; Biological Process: pollen maturation (GO:0010152);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: embryonic meristem development (GO:0048508);; Biological Process: anther development (GO:0048653);; Biological Process: protein homooligomerization (GO:0051260);; ","--","--","--","LRR receptor-like serine/threonine-protein kinase RPK2 (Precursor) OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","T","Signal transduction mechanisms","--"]
["EVM0021641",{"v":4.88e-07,"d":"4.88E-07"},{"v":2.13e-08,"d":"2.13E-08"},-1.868863205,"down","--","--","Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; ","--","--","--","--","S","Function unknown","--"]
["EVM0023871",0.00084516,{"v":8.6e-05,"d":"8.60E-05"},-1.53399087,"down","--","--","--","K15032|4.39083e-81|sly:101255083|uncharacterized LOC101255083; K15032 mTERF domain-containing protein, mitochondrial (A)","[KR]","--","--","K","Transcription","--"]
["EVM0017937",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1B-16 GN=R1B-16 OS=Solanum demissum (Wild potato) PE=3 SV=1","T","Signal transduction mechanisms","--"]
["EVM0020022",0.003617439,0.000544916,-1.575748334,"up,down","[O]","Posttranslational modification, protein turnover, chaperones ","Molecular Function: nucleotide binding (GO:0000166);; Molecular Function: hydrolase activity (GO:0016787);; Biological Process: protein metabolic process (GO:0019538);; ","K03544|0|sot:102602500|ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial-like; K03544 ATP-dependent Clp protease ATP-binding subunit ClpX (A)","[O]","Posttranslational modification, protein turnover, chaperones ","ATP-dependent zinc metalloprotease FtsH homolog GN=ftsH OS=Chlorella vulgaris (Green alga) PE=3 SV=1","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0003579",0.000870664,{"v":9.36e-05,"d":"9.36E-05"},-1.307666533,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative disease resistance protein At1g50180 GN=At1g50180 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=2","T","Signal transduction mechanisms","--"]
["EVM0002251",{"v":4.33e-15,"d":"4.33E-15"},{"v":3.83e-17,"d":"3.83E-17"},3.394700436,"up","--","--","--","--","[R]","General function prediction only ","--","R","General function prediction only","--"]
["EVM0006621",{"v":1.77e-07,"d":"1.77E-07"},{"v":6.8e-09,"d":"6.80E-09"},1.982657973,"up","[Z]","Cytoskeleton ","--","K10406|0|sot:102598351|kinesin-4-like; K10406 kinesin family member C2/C3 (A)","[Z]","Cytoskeleton ","Kinesin KP1 GN=KP1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","Z","Cytoskeleton","--"]
["EVM0001110",0.000859097,{"v":8.99e-05,"d":"8.99E-05"},1.605568787,"up","--","--","Biological Process: cytokinesis (GO:0000910);; Biological Process: tubulin complex assembly (GO:0007021);; Cellular Component: chloroplast (GO:0009507);; Biological Process: embryo development ending in seed dormancy (GO:0009793);; Molecular Function: carboxylic ester hydrolase activity (GO:0052689);; ","--","[S]","Function unknown ","Tubulin-folding cofactor E GN=F26A9.18 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0026253",0.006008258,0.001082884,-3.873231793,"down","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0021897",0.006008258,0.001082884,-3.873231793,"down","--","--","--","--","--","--","--","S","Function unknown","--"]
["Salvia_newGene_90719",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1B-16 GN=R1B-16 OS=Solanum demissum (Wild potato) PE=3 SV=1","T","Signal transduction mechanisms","PREDICTED: putative late blight resistance protein homolog R1B-16 [Sesamum indicum]"]
["EVM0000920",{"v":4.69e-08,"d":"4.69E-08"},{"v":1.23e-09,"d":"1.23E-09"},2.255629445,"up","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Molecular Function: copper ion binding (GO:0005507);; Molecular Function: L-ascorbate oxidase activity (GO:0008447);; Biological Process: lignin catabolic process (GO:0046274);; Cellular Component: apoplast (GO:0048046);; Molecular Function: hydroquinone:oxygen oxidoreductase activity (GO:0052716);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Laccase-3 (Precursor) GN=LAC3 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","Q","Secondary metabolites biosynthesis, transport and catabolism","--"]
["EVM0017658",0.000870664,{"v":9.36e-05,"d":"9.36E-05"},-1.307666533,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative disease resistance protein At1g58400 GN=At1g58400 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1","T","Signal transduction mechanisms","--"]
["EVM0011995",{"v":4.69e-08,"d":"4.69E-08"},{"v":1.23e-09,"d":"1.23E-09"},2.255629445,"up","--","--","--","--","--","--","GDSL esterase/lipase At3g09930 (Precursor) GN=At3g09930 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","I","Lipid transport and metabolism","--"]
["EVM0006891",{"v":1.77e-07,"d":"1.77E-07"},{"v":6.8e-09,"d":"6.80E-09"},1.982657973,"up","--","--","--","--","--","--","NAC domain-containing protein 21/22 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","K","Transcription","--"]
["EVM0006637",{"v":1.22e-05,"d":"1.22E-05"},{"v":8.49e-07,"d":"8.49E-07"},1.873541896,"up","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0003231",0.003617439,0.000544916,-1.575748334,"up,down","[O]","Posttranslational modification, protein turnover, chaperones ","Molecular Function: nucleotide binding (GO:0000166);; ","--","[O]","Posttranslational modification, protein turnover, chaperones ","Protein cfxQ homolog GN=cfxQ OS=Odontella sinensis (Marine centric diatom) PE=3 SV=1","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0018342",0.006008258,0.001082884,-3.873231793,"down","[R]","General function prediction only ","--","K15201|0|sly:101258763|general transcription factor 3C polypeptide 3; K15201 general transcription factor 3C polypeptide 3 (transcription factor C subunit 4) (A)","[K]","Transcription ","--","K","Transcription","--"]
["EVM0013195",{"v":9.26e-06,"d":"9.26E-06"},{"v":5.92e-07,"d":"5.92E-07"},2.146060612,"up","--","--","--","--","--","--","--","R","General function prediction only","--"]
["EVM0024323",0.000870664,{"v":9.36e-05,"d":"9.36E-05"},-1.307666533,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Disease resistance protein RPP8 GN=MWF20.19 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","T","Signal transduction mechanisms","--"]
["EVM0015126",{"v":4.69e-08,"d":"4.69E-08"},{"v":1.23e-09,"d":"1.23E-09"},2.255629445,"up","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Molecular Function: copper ion binding (GO:0005507);; Molecular Function: L-ascorbate oxidase activity (GO:0008447);; Biological Process: lignin catabolic process (GO:0046274);; Cellular Component: apoplast (GO:0048046);; Molecular Function: hydroquinone:oxygen oxidoreductase activity (GO:0052716);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Laccase-3 (Precursor) GN=LAC3 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","Q","Secondary metabolites biosynthesis, transport and catabolism","--"]
["EVM0001783",{"v":8.08e-06,"d":"8.08E-06"},{"v":4.7e-07,"d":"4.70E-07"},1.894718978,"up","[RTKL]","--","Molecular Function: kinase activity (GO:0016301);; Biological Process: cellular metabolic process (GO:0044237);; ","--","--","--","Protein LYK5 (Precursor) GN=LYK5 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","T","Signal transduction mechanisms","--"]
["EVM0012621",{"v":4.33e-15,"d":"4.33E-15"},{"v":3.83e-17,"d":"3.83E-17"},3.394700436,"up","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0018859",{"v":4.69e-08,"d":"4.69E-08"},{"v":1.23e-09,"d":"1.23E-09"},2.255629445,"up","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Molecular Function: copper ion binding (GO:0005507);; Biological Process: lignin catabolic process (GO:0046274);; Cellular Component: apoplast (GO:0048046);; Molecular Function: hydroquinone:oxygen oxidoreductase activity (GO:0052716);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Laccase-12 (Precursor) GN=LAC12 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","--"]
["EVM0002227",0.006008258,0.001082884,-3.873231793,"down","--","--","--","--","--","--","F-box/kelch-repeat protein At3g23880 GN=At3g23880 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","--"]
["EVM0017795",0.006340017,0.001206158,1.325876238,"up","--","--","Molecular Function: alternative oxidase activity (GO:0009916);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: electron transport chain (GO:0022900);; Molecular Function: metal ion binding (GO:0046872);; Cellular Component: respiratory chain (GO:0070469);; ","K17893|8.27088e-43|cic:CICLE_v10003687mg|hypothetical protein; K17893 ubiquinol oxidase [EC:1.10.3.11] (A)","--","--","Ubiquinol oxidase 3, mitochondrial (Precursor) OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","S","Function unknown","--"]
["Salvia_newGene_3238",{"v":9.26e-06,"d":"9.26E-06"},{"v":5.88e-07,"d":"5.88E-07"},-1.865156697,"down","--","--","Molecular Function: binding (GO:0005488);; ","--","--","--","--","R","General function prediction only","PREDICTED: zinc finger MYM-type protein 1-like [Beta vulgaris subsp. vulgaris]"]
["EVM0021308",0.00280583,0.000350729,1.891294437,"up","--","--","--","--","[R]","General function prediction only ","30-kDa cleavage and polyadenylation specificity factor 30 {ECO:0000303|PubMed:18479511} OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","R","General function prediction only","--"]
["EVM0017060",0.000870664,{"v":9.36e-05,"d":"9.36E-05"},-1.307666533,"down","--","--","Molecular Function: magnesium ion binding (GO:0000287);; Biological Process: metabolic process (GO:0008152);; Molecular Function: terpene synthase activity (GO:0010333);; ","K04121|1.62236e-91|sly:101247446|beta-phellandrene synthase (neryl-diphosphate-cyclizing), chloroplastic-like; K04121 ent-kaurene synthase [EC:4.2.3.19] (A)","--","--","Cis-abienol synthase, chloroplastic (Precursor) GN=ABS OS=Nicotiana tabacum (Common tobacco) PE=1 SV=1","--","--","--"]
["EVM0004219",0.000859097,{"v":8.99e-05,"d":"8.99E-05"},1.605568787,"up","[O]","Posttranslational modification, protein turnover, chaperones ","--","--","[O]","Posttranslational modification, protein turnover, chaperones ","Katanin p60 ATPase-containing subunit A1 {ECO:0000255|HAMAP-Rule:MF_03023} GN=At1g80350 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","--"]
["Salvia_newGene_64964",0.006008258,0.001082884,-3.873231793,"down","--","--","--","--","[R]","General function prediction only ","Pentatricopeptide repeat-containing protein At1g12300, mitochondrial (Precursor) GN=At1g12300 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like [Sesamum indicum]"]
["EVM0005292",0.004594858,0.000734643,1.289646579,"up","[RTKL]","--","Biological Process: maltose metabolic process (GO:0000023);; Molecular Function: phosphorelay sensor kinase activity (GO:0000155);; Biological Process: phosphorelay signal transduction system (GO:0000160);; Molecular Function: protein kinase C activity (GO:0004697);; Molecular Function: protein tyrosine kinase activity (GO:0004713);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: Golgi apparatus (GO:0005794);; Biological Process: rRNA processing (GO:0006364);; Biological Process: phototropism (GO:0009638);; Biological Process: response to high light intensity (GO:0009644);; Biological Process: response to sucrose (GO:0009744);; Biological Process: blue light signaling pathway (GO:0009785);; Molecular Function: blue light photoreceptor activity (GO:0009882);; Biological Process: chloroplast relocation (GO:0009902);; Biological Process: thylakoid membrane organization (GO:0010027);; Biological Process: stomatal complex morphogenesis (GO:0010103);; Biological Process: response to red light (GO:0010114);; Biological Process: stomatal movement (GO:0010118);; Biological Process: regulation of proton transport (GO:0010155);; Molecular Function: FMN binding (GO:0010181);; Biological Process: photosystem II assembly (GO:0010207);; Biological Process: response to far red light (GO:0010218);; Biological Process: negative regulation of anion channel activity by blue light (GO:0010362);; Cellular Component: membrane (GO:0016020);; Biological Process: mRNA modification (GO:0016556);; Biological Process: starch biosynthetic process (GO:0019252);; Biological Process: glucosinolate biosynthetic process (GO:0019761);; Biological Process: signal transduction by phosphorylation (GO:0023014);; Biological Process: regulation of protein dephosphorylation (GO:0035304);; Biological Process: transcription from plastid promoter (GO:0042793);; Molecular Function: identical protein binding (GO:0042802);; Biological Process: positive regulation of catalytic activity (GO:0043085);; Biological Process: positive regulation of transcription, DNA-templated (GO:0045893);; Biological Process: protein autophosphorylation (GO:0046777);; ","--","--","--","Phototropin-2 GN=K21L19.6 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","T","Signal transduction mechanisms","--"]
["EVM0016325",0.004594858,0.000734643,1.289646579,"up","--","--","--","--","[U]","Intracellular trafficking, secretion, and vesicular transport ","--","U","Intracellular trafficking, secretion, and vesicular transport","--"]
["Salvia_newGene_64969",0.006008258,0.001082884,-3.873231793,"down","--","--","--","--","[R]","General function prediction only ","Pentatricopeptide repeat-containing protein At1g12620 GN=At1g12620 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Sesamum indicum]"]
["EVM0003365",0.000859097,{"v":8.99e-05,"d":"8.99E-05"},1.605568787,"up","[RTKL]","--","--","--","--","--","Putative G-type lectin S-receptor-like serine/threonine-protein kinase At1g61610 (Precursor) GN=At1g61610 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1","T","Signal transduction mechanisms","--"]
["EVM0001194",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Late blight resistance protein R1-A GN=R1A OS=Solanum demissum (Wild potato) PE=3 SV=1","T","Signal transduction mechanisms","--"]
["Salvia_newGene_64142",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[R]","General function prediction only ","Pentatricopeptide repeat-containing protein At1g62670, mitochondrial (Precursor) GN=At1g62670 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=2","T","Signal transduction mechanisms","hypothetical protein MIMGU_mgv1a020688mg [Erythranthe guttata]"]
["EVM0006320",0.0048876,0.00083828,1.08721942,"up","[L]","Replication, recombination and repair ","Molecular Function: transferase activity (GO:0016740);; Molecular Function: organic cyclic compound binding (GO:0097159);; Molecular Function: heterocyclic compound binding (GO:1901363);; ","--","[L]","Replication, recombination and repair ","Protein STICHEL-like 2 GN=At4g24790 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","L","Replication, recombination and repair","--"]
["Salvia_newGene_89981",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1B-16 GN=R1B-16 OS=Solanum demissum (Wild potato) PE=3 SV=1","T","Signal transduction mechanisms","hypothetical protein MIMGU_mgv1a020688mg [Erythranthe guttata]"]
["EVM0016900",0.002108628,0.000251319,1.378487044,"up","--","--","Cellular Component: endoplasmic reticulum (GO:0005783);; Biological Process: protein folding (GO:0006457);; Biological Process: ER-nucleus signaling pathway (GO:0006984);; Biological Process: response to heat (GO:0009408);; Biological Process: pollen development (GO:0009555);; Biological Process: response to high light intensity (GO:0009644);; Biological Process: response to endoplasmic reticulum stress (GO:0034976);; Biological Process: response to hydrogen peroxide (GO:0042542);; ","--","--","--","--","R","General function prediction only","--"]
["EVM0020685",0.000429328,{"v":4.12e-05,"d":"4.12E-05"},-1.334295441,"down","--","--","--","--","--","--","F-box/kelch-repeat protein At3g06240 GN=At3g06240 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","--"]
["EVM0015735",{"v":4.33e-15,"d":"4.33E-15"},{"v":2.16e-17,"d":"2.16E-17"},-4.227019327,"down","--","--","Molecular Function: actin binding (GO:0003779);; Cellular Component: F-actin capping protein complex (GO:0008290);; Biological Process: response to heat (GO:0009408);; Biological Process: actin filament capping (GO:0051693);; Cellular Component: WASH complex (GO:0071203);; ","K10365|1.39095e-140|vvi:100242539|probable F-actin-capping protein subunit beta; K10365 capping protein (actin filament) muscle Z-line, beta (A)","[Z]","Cytoskeleton ","Probable F-actin-capping protein subunit beta GN=At1g71790 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","Z","Cytoskeleton","--"]
["EVM0020926",0.003617439,0.000544916,-1.575748334,"up,down","--","--","--","K11126|0|sly:101244526|telomerase reverse transcriptase; K11126 telomerase reverse transcriptase [EC:2.7.7.49] (A)","[LB]","--","Telomerase reverse transcriptase GN=TERT OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","L","Replication, recombination and repair","--"]
["EVM0010752",0.00280583,0.000350729,1.891294437,"up","[E]","Amino acid transport and metabolism ","Molecular Function: gamma-glutamyltransferase activity (GO:0003840);; Biological Process: glutathione metabolic process (GO:0006749);; ","K18592|0|sot:102597338|gamma-glutamyltranspeptidase 1-like; K18592 gamma-glutamyltranspeptidase / glutathione hydrolase / leukotriene-C4 hydrolase [EC:2.3.2.2 3.4.19.13 3.4.19.14] (A)","[E]","Amino acid transport and metabolism ","Gamma-glutamyltranspeptidase 1 (Precursor) GN=GGT1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","E","Amino acid transport and metabolism","--"]
["EVM0003384",0.002108628,0.000251319,1.378487044,"up","--","--","--","--","--","--","Probable non-specific lipid-transfer protein AKCS9 (Precursor) OS=Vigna unguiculata (Cowpea) PE=2 SV=1","R","General function prediction only","--"]
["Salvia_newGene_9581",0.003350436,0.000486982,-1.819323946,"down","--","--","--","--","[R]","General function prediction only ","Putative ribonuclease H protein At1g65750 GN=At1g65750 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1","R","General function prediction only","PREDICTED: putative ribonuclease H protein At1g65750-like isoform X2 [Citrus sinensis]"]
["EVM0016094",0.006008258,0.001082884,-3.873231793,"down","--","--","Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","Probable WRKY transcription factor 75 GN=WRKY75 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","K","Transcription","--"]
["EVM0005372",0.006008258,0.001082884,-3.873231793,"down","--","--","--","--","[O]","Posttranslational modification, protein turnover, chaperones ","Riboflavin kinase GN=F18E5.90 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0006546",0.006008258,0.001082884,-3.873231793,"down","[RTKL]","--","Molecular Function: transferase activity, transferring phosphorus-containing groups (GO:0016772);; ","--","--","--","Protein STRUBBELIG-RECEPTOR FAMILY 2 (Precursor) GN=SRF2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","T","Signal transduction mechanisms","--"]
["EVM0020434",0.006340017,0.001206158,1.325876238,"up","--","--","Biological Process: lipid transport (GO:0006869);; Molecular Function: lipid binding (GO:0008289);; ","--","--","--","Protein YLS3 (Precursor) GN=YLS3 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","--"]
["EVM0026639",0.000870664,{"v":9.36e-05,"d":"9.36E-05"},-1.307666533,"down","[TDBLU]","--","--","K07203|0|sly:101259295|serine/threonine-protein kinase TOR; K07203 FKBP12-rapamycin complex-associated protein (A)","[L]","Replication, recombination and repair ","Serine/threonine-protein kinase TOR GN=TOR OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","L","Replication, recombination and repair","--"]
["Salvia_newGene_80853",0.003617439,0.000546822,-1.606064416,"down","--","--","Molecular Function: DNA binding (GO:0003677);; Biological Process: DNA recombination (GO:0006310);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: metal ion binding (GO:0046872);; ","--","[R]","General function prediction only ","Endonuclease OS=Nicotiana tabacum (Common tobacco) PE=2 SV=1","R","General function prediction only","hypothetical protein VITISV_011340 [Vitis vinifera]"]
["EVM0013441",{"v":8.08e-06,"d":"8.08E-06"},{"v":4.7e-07,"d":"4.70E-07"},1.894718978,"up","--","--","Cellular Component: nucleus (GO:0005634);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: plasma membrane (GO:0005886);; ","--","--","--","--","S","Function unknown","--"]
["EVM0028084",0.004594858,0.000734643,1.289646579,"up","--","--","--","--","--","--","B3 domain-containing protein Os01g0723500 OS=Oryza sativa subsp. japonica (Rice) PE=3 SV=1","K","Transcription","--"]
["EVM0004476",0.004969279,0.000866735,-2.685422322,"down","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0010077",0.006008258,0.001082884,-3.873231793,"down","--","--","--","--","[R]","General function prediction only ","Pentatricopeptide repeat-containing protein At1g12300, mitochondrial (Precursor) GN=At1g12300 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","--"]
["EVM0023128",0.006008258,0.001082884,1.325876238,"up,down","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Molecular Function: monooxygenase activity (GO:0004497);; Molecular Function: iron ion binding (GO:0005506);; Molecular Function: electron carrier activity (GO:0009055);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705);; Molecular Function: heme binding (GO:0020037);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","[QI]","--","Cytochrome P450 CYP72A219 OS=Panax ginseng (Korean ginseng) PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","--"]
["EVM0021282",{"v":1.77e-07,"d":"1.77E-07"},{"v":6.8e-09,"d":"6.80E-09"},1.982657973,"up","--","--","Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; ","--","--","--","Protein CUP-SHAPED COTYLEDON 2 GN=K19P17.12 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","K","Transcription","--"]
["EVM0020488",0.000870664,{"v":9.36e-05,"d":"9.36E-05"},-1.307666533,"down","--","--","--","K00134|1.07449e-08|pmum:103325740|glyceraldehyde-3-phosphate dehydrogenase GAPCP1, chloroplastic; K00134 glyceraldehyde 3-phosphate dehydrogenase [EC:1.2.1.12] (A)","[K]","Transcription ","--","K","Transcription","--"]
["EVM0002808",0.006340017,0.001203061,1.325876238,"up","--","--","Molecular Function: copper ion binding (GO:0005507);; Molecular Function: electron carrier activity (GO:0009055);; Biological Process: reproductive process (GO:0022414);; Biological Process: multicellular organismal process (GO:0032501);; ","--","--","--","Basic blue protein OS=Cucumis sativus (Cucumber) PE=1 SV=1","R","General function prediction only","--"]
["EVM0003797",0.002108628,0.000251319,1.378487044,"up","--","--","Cellular Component: endoplasmic reticulum (GO:0005783);; ","--","[S]","Function unknown ","--","S","Function unknown","--"]
["EVM0026450",{"v":4.33e-15,"d":"4.33E-15"},{"v":2.16e-17,"d":"2.16E-17"},-4.227019327,"down","[R]","General function prediction only ","Molecular Function: structural molecule activity (GO:0005198);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: intracellular protein transport (GO:0006886);; Biological Process: vesicle-mediated transport (GO:0016192);; Molecular Function: myosin heavy chain kinase activity (GO:0016905);; Cellular Component: COPI vesicle coat (GO:0030126);; ","K05236|0|sly:101251283|coatomer subunit alpha-1; K05236 coatomer protein complex, subunit alpha (xenin) (A)","[U]","Intracellular trafficking, secretion, and vesicular transport ","Coatomer subunit alpha-1 GN=At1g62020 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","U","Intracellular trafficking, secretion, and vesicular transport","--"]
["EVM0024659",{"v":4.33e-15,"d":"4.33E-15"},{"v":2.16e-17,"d":"2.16E-17"},-4.227019327,"down","[RTKL]","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; ","K03083|0|cit:102626568|shaggy-related protein kinase kappa-like; K03083 glycogen synthase kinase 3 beta [EC:2.7.11.26] (A)","[G]","Carbohydrate transport and metabolism ","Shaggy-related protein kinase delta GN=ASK4 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","T","Signal transduction mechanisms","--"]
["EVM0014844",0.000429328,{"v":4.12e-05,"d":"4.12E-05"},-1.334295441,"down","[L]","Replication, recombination and repair ","Molecular Function: nucleotide binding (GO:0000166);; Biological Process: double-strand break repair via homologous recombination (GO:0000724);; Biological Process: cytokinesis by cell plate formation (GO:0000911);; Molecular Function: nucleoside binding (GO:0001882);; Biological Process: regionalization (GO:0003002);; Molecular Function: DNA binding (GO:0003677);; Molecular Function: DNA-directed DNA polymerase activity (GO:0003887);; Biological Process: DNA replication initiation (GO:0006270);; Biological Process: regulation of DNA replication (GO:0006275);; Biological Process: DNA methylation (GO:0006306);; Biological Process: cell adhesion (GO:0007155);; Biological Process: cell proliferation (GO:0008283);; Biological Process: negative regulation of flower development (GO:0009910);; Biological Process: leaf morphogenesis (GO:0009965);; Biological Process: trichome morphogenesis (GO:0010090);; Biological Process: regulation of G2/M transition of mitotic cell cycle (GO:0010389);; Biological Process: DNA endoreduplication (GO:0042023);; Biological Process: actin nucleation (GO:0045010);; Biological Process: floral organ formation (GO:0048449);; Biological Process: histone H3-K9 methylation (GO:0051567);; ","K02320|0|sot:102587331|DNA polymerase alpha catalytic subunit-like; K02320 DNA polymerase alpha subunit A [EC:2.7.7.7] (A)","[L]","Replication, recombination and repair ","DNA polymerase alpha catalytic subunit OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2","L","Replication, recombination and repair","--"]
["EVM0018452",0.000870664,{"v":9.36e-05,"d":"9.36E-05"},-1.307666533,"down","[P]","Inorganic ion transport and metabolism ","Molecular Function: DNA binding (GO:0003677);; Molecular Function: copper ion binding (GO:0005507);; Biological Process: glycolytic process (GO:0006096);; Biological Process: regulation of DNA replication (GO:0006275);; Biological Process: DNA packaging (GO:0006323);; Biological Process: water transport (GO:0006833);; Biological Process: hyperosmotic response (GO:0006972);; Biological Process: Golgi organization (GO:0007030);; Biological Process: response to temperature stimulus (GO:0009266);; Biological Process: indoleacetic acid biosynthetic process (GO:0009684);; Cellular Component: chloroplast envelope (GO:0009941);; Cellular Component: stromule (GO:0010319);; Molecular Function: sulfite reductase activity (GO:0016002);; Cellular Component: membrane (GO:0016020);; Biological Process: sterol biosynthetic process (GO:0016126);; Biological Process: cysteine biosynthetic process (GO:0019344);; Biological Process: sulfate reduction (GO:0019419);; Biological Process: sulfide oxidation, using siroheme sulfite reductase (GO:0019424);; Biological Process: glucosinolate biosynthetic process (GO:0019761);; Molecular Function: heme binding (GO:0020037);; Cellular Component: chloroplast nucleoid (GO:0042644);; Biological Process: negative regulation of transcription, DNA-templated (GO:0045892);; Biological Process: response to cadmium ion (GO:0046686);; Cellular Component: apoplast (GO:0048046);; Molecular Function: sulfite reductase (ferredoxin) activity (GO:0050311);; Molecular Function: 4 iron, 4 sulfur cluster binding (GO:0051539);; ","K00392|0|cic:CICLE_v10014382mg|hypothetical protein; K00392 sulfite reductase (ferredoxin) [EC:1.8.7.1] (A)","[P]","Inorganic ion transport and metabolism ","Sulfite reductase 1 [ferredoxin], chloroplastic (Precursor) GN=SIR1 OS=Nicotiana tabacum (Common tobacco) PE=1 SV=1","P","Inorganic ion transport and metabolism","--"]
["EVM0014251",0.006340017,0.001206158,1.325876238,"up","--","--","Molecular Function: structural constituent of ribosome (GO:0003735);; Cellular Component: ribosome (GO:0005840);; Biological Process: translation (GO:0006412);; ","--","[O]","Posttranslational modification, protein turnover, chaperones ","--","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0013270",{"v":4.33e-15,"d":"4.33E-15"},{"v":2.16e-17,"d":"2.16E-17"},-4.227019327,"down","--","--","Molecular Function: metal ion binding (GO:0046872);; ","K15601|0|sot:102601383|uncharacterized LOC102601383; K15601 lysine-specific demethylase 3 [EC:1.14.11.-] (A)","[K]","Transcription ","Lysine-specific demethylase JMJ25 GN=MLP3.6 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","K","Transcription","--"]
["EVM0001892",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","K13457|6.80031e-58|sot:102595981|putative disease resistance protein At1g50180-like (A)","[T]","Signal transduction mechanisms ","Putative disease resistance protein At1g50180 GN=At1g50180 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=2","T","Signal transduction mechanisms","--"]
["Salvia_newGene_36555",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1A-6 GN=R1A-6 OS=Solanum demissum (Wild potato) PE=3 SV=2","T","Signal transduction mechanisms","hypothetical protein MIMGU_mgv1a023257mg, partial [Erythranthe guttata]"]
["EVM0007895",0.001255966,0.00013874,1.248541407,"up","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1A-6 GN=R1A-6 OS=Solanum demissum (Wild potato) PE=3 SV=2","T","Signal transduction mechanisms","--"]
["EVM0025908",0.0048876,0.00083828,1.08721942,"up","--","--","--","--","--","--","Protein IRX15-LIKE GN=IRX15-L OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","--"]
["EVM0015262",0.001255966,0.00013874,1.248541407,"up","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1B-17 GN=R1B-17 OS=Solanum demissum (Wild potato) PE=3 SV=1","T","Signal transduction mechanisms","--"]
["EVM0014072",0.006340017,0.001206158,1.325876238,"up","--","--","--","K04487|2.20452e-61|vvi:100256016|uncharacterized LOC100256016; K06630 14-3-3 protein epsilon (A)","[R]","General function prediction only ","Uncharacterized protein At4g02000 GN=At4g02000 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","T","Signal transduction mechanisms","--"]
["EVM0002117",{"v":8.08e-06,"d":"8.08E-06"},{"v":4.7e-07,"d":"4.70E-07"},1.894718978,"up","--","--","--","--","--","--","Protein trichome birefringence-like 12 GN=TBL12 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","--"]
["Salvia_newGene_53648",0.000870664,{"v":9.36e-05,"d":"9.36E-05"},-1.307666533,"down","--","--","--","K13457|7.06003e-62|sot:102595981|putative disease resistance protein At1g50180-like (A)","[T]","Signal transduction mechanisms ","Disease resistance protein RPP8 GN=MWF20.19 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","T","Signal transduction mechanisms","PREDICTED: putative disease resistance protein At1g50180 [Sesamum indicum]"]
["EVM0011147",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1A-6 GN=R1A-6 OS=Solanum demissum (Wild potato) PE=3 SV=2","T","Signal transduction mechanisms","--"]
["Salvia_newGene_56386",{"v":4.33e-15,"d":"4.33E-15"},{"v":3.83e-17,"d":"3.83E-17"},3.394700436,"up","--","--","--","--","[R]","General function prediction only ","--","L","Replication, recombination and repair","hypothetical protein VITISV_019123 [Vitis vinifera]"]
["EVM0000802",0.006008258,0.001082884,-3.873231793,"down","[Z]","Cytoskeleton ","--","K11498|0|pper:PRUPE_ppa001038mg|hypothetical protein; K11498 centromeric protein E (A)","[Z]","Cytoskeleton ","Kinesin-like protein NACK1 GN=NACK1 OS=Nicotiana tabacum (Common tobacco) PE=1 SV=1","Z","Cytoskeleton","--"]
["EVM0006292",0.004969279,0.000866735,-2.685422322,"down","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","--","--","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Laccase-21 (Precursor) GN=LAC21 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","--"]
["EVM0004378",{"v":9.26e-06,"d":"9.26E-06"},{"v":5.92e-07,"d":"5.92E-07"},2.146060612,"up","[KAD]","--","--","K09422|3.70405e-161|pper:PRUPE_ppa003628mg|hypothetical protein; K09422 myb proto-oncogene protein, plant (A)","[K]","Transcription ","Transcription factor GAMYB OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","K","Transcription","--"]
["EVM0006989",0.004594858,0.000734643,1.289646579,"up","--","--","--","--","--","--","--","S","Function unknown","--"]
["Salvia_newGene_1784",0.002166007,0.000264454,1.373328374,"up","[MG]","--","Molecular Function: lyase activity (GO:0016829);; ","--","[GM]","--","UDP-glucuronic acid decarboxylase 1 GN=UXS1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","G","Carbohydrate transport and metabolism","UDP-glucuronic acid decarboxylase 1 isoform 2 [Theobroma cacao] "]
["Salvia_newGene_56652",{"v":8.08e-06,"d":"8.08E-06"},{"v":4.7e-07,"d":"4.70E-07"},1.894718978,"up","[L]","Replication, recombination and repair ","Molecular Function: catalytic activity (GO:0003824);; Cellular Component: mitochondrion (GO:0005739);; ","--","[R]","General function prediction only ","RNA-directed DNA polymerase homolog OS=Oenothera berteroana (Bertero&apos;s evening primrose) PE=4 SV=1","R","General function prediction only","OSJNBa0006B20.7 [Oryza sativa Japonica Group] "]
["EVM0012560",0.006008258,0.001082884,-3.873231793,"down","[L]","Replication, recombination and repair ","Molecular Function: nucleic acid binding (GO:0003676);; Biological Process: DNA metabolic process (GO:0006259);; Molecular Function: metal ion binding (GO:0046872);; ","--","[R]","General function prediction only ","Uncharacterized mitochondrial protein AtMg00860 GN=AtMg00860 OS=Arabidopsis thaliana (Mouse-ear cress) PE=4 SV=1","L","Replication, recombination and repair","--"]
["Salvia_newGene_53045",0.006340017,0.001206158,1.325876238,"up","--","--","--","--","[R]","General function prediction only ","Endonuclease OS=Nicotiana tabacum (Common tobacco) PE=2 SV=1","R","General function prediction only","putative gag-pol polyprotein [Zea mays]"]
["EVM0023044",0.006008258,0.001082884,-3.873231793,"down","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0010303",0.006705101,0.001353126,-1.606064416,"down","--","--","--","--","[K]","Transcription ","Putative transcription elongation factor SPT5 homolog 1 GN=At4g08350 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","K","Transcription","--"]
["EVM0027051",0.006340017,0.001216399,1.027296299,"up","--","--","Molecular Function: calcium ion binding (GO:0005509);; ","--","--","--","--","R","General function prediction only","--"]
["EVM0004927",0.000131541,{"v":1.15e-05,"d":"1.15E-05"},1.780467443,"up","--","--","Molecular Function: catalytic activity (GO:0003824);; ","--","--","--","Glucan endo-1,3-beta-glucosidase, basic isoform (Precursor) GN=GNS1 OS=Prunus persica (Peach) PE=3 SV=1","R","General function prediction only","--"]
["EVM0018132",0.006008258,0.001082884,-3.873231793,"down","--","--","--","--","[R]","General function prediction only ","Pentatricopeptide repeat-containing protein At1g12300, mitochondrial (Precursor) GN=At1g12300 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","--"]
["EVM0011538",0.006340017,0.001203061,1.325876238,"up","--","--","Molecular Function: catalytic activity (GO:0003824);; Biological Process: metabolic process (GO:0008152);; ","--","--","--","--","S","Function unknown","--"]
["EVM0003191",0.002108628,0.000251319,1.378487044,"up","--","--","--","--","--","--","Protein ROOT PRIMORDIUM DEFECTIVE 1 GN=RPD1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","S","Function unknown","--"]
["EVM0024407",0.000131541,{"v":1.15e-05,"d":"1.15E-05"},1.780467443,"up","--","--","--","--","--","--","--","S","Function unknown","--"]
["Salvia_newGene_80669",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1A-6 GN=R1A-6 OS=Solanum demissum (Wild potato) PE=3 SV=2","T","Signal transduction mechanisms","PREDICTED: putative late blight resistance protein homolog R1B-16 [Sesamum indicum]"]
["EVM0009246",0.002108628,0.000251319,1.378487044,"up","[RTKL]","--","Molecular Function: kinase activity (GO:0016301);; ","--","--","--","G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 (Precursor) GN=RLK1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","T","Signal transduction mechanisms","--"]
["EVM0015544",{"v":4.33e-15,"d":"4.33E-15"},{"v":2.16e-17,"d":"2.16E-17"},-4.227019327,"down","--","--","--","--","--","--","--","R","General function prediction only","--"]
["EVM0015116",{"v":9.26e-06,"d":"9.26E-06"},{"v":5.92e-07,"d":"5.92E-07"},2.146060612,"up","--","--","--","--","--","--","Putative E3 ubiquitin-protein ligase XBAT35 GN=XBAT35 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0023736",{"v":4.69e-08,"d":"4.69E-08"},{"v":1.23e-09,"d":"1.23E-09"},2.255629445,"up","[P]","Inorganic ion transport and metabolism ","--","K14802|0|sot:102585532|phospholipid-transporting ATPase 3-like; K14802 phospholipid-transporting ATPase [EC:3.6.3.1] (A)","[R]","General function prediction only ","Phospholipid-transporting ATPase 3 GN=F23H11.14 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","P","Inorganic ion transport and metabolism","--"]
["EVM0022240",{"v":4.69e-08,"d":"4.69E-08"},{"v":1.23e-09,"d":"1.23E-09"},2.255629445,"up","--","--","Biological Process: regulation of immune system process (GO:0002682);; Biological Process: immune response (GO:0006955);; Biological Process: hormone-mediated signaling pathway (GO:0009755);; Biological Process: aromatic compound biosynthetic process (GO:0019438);; Biological Process: regulation of cellular metabolic process (GO:0031323);; Biological Process: regulation of defense response (GO:0031347);; Biological Process: single-organism metabolic process (GO:0044710);; Biological Process: response to other organism (GO:0051707);; Biological Process: organic cyclic compound biosynthetic process (GO:1901362);; Biological Process: cellular response to oxygen-containing compound (GO:1901701);; ","--","--","--","Probable WRKY transcription factor 40 GN=WRKY40 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","K","Transcription","--"]
["Salvia_newGene_25965",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1A-6 GN=R1A-6 OS=Solanum demissum (Wild potato) PE=3 SV=2","T","Signal transduction mechanisms","hypothetical protein MIMGU_mgv1a001243mg [Erythranthe guttata]"]
["EVM0019682",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1B-23 GN=R1B-23 OS=Solanum demissum (Wild potato) PE=3 SV=1","T","Signal transduction mechanisms","--"]
["Salvia_newGene_43289",0.003617439,0.000546822,-1.266778259,"down","--","--","--","--","--","--","--","T","Signal transduction mechanisms","hypothetical protein MIMGU_mgv1a002161mg [Erythranthe guttata]"]
["EVM0001875",0.003305481,0.000451621,-1.575748334,"up,down","--","--","--","K12349|0|sly:101251446|neutral ceramidase; K12349 neutral ceramidase [EC:3.5.1.23] (A)","[T]","Signal transduction mechanisms ","Neutral ceramidase (Precursor) GN=At2g38010 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1","G","Carbohydrate transport and metabolism","--"]
["EVM0008760",{"v":8.08e-06,"d":"8.08E-06"},{"v":4.7e-07,"d":"4.70E-07"},1.894718978,"up","--","--","--","K13076|4.41764e-26|mus:103996075|delta(8)-fatty-acid desaturase 2-like; K13076 delta8-fatty-acid desaturase [EC:1.14.19.4] (A)","[I]","Lipid transport and metabolism ","Delta(8)-fatty-acid desaturase 1 GN=SLD1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","I","Lipid transport and metabolism","--"]
["EVM0024940",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1A-6 GN=R1A-6 OS=Solanum demissum (Wild potato) PE=3 SV=2","T","Signal transduction mechanisms","--"]
["Salvia_newGene_52746",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","--","--","--","T","Signal transduction mechanisms","PREDICTED: putative late blight resistance protein homolog R1A-3 [Sesamum indicum]"]
["EVM0016928",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1A-6 GN=R1A-6 OS=Solanum demissum (Wild potato) PE=3 SV=2","T","Signal transduction mechanisms","--"]
["EVM0005466",0.004594858,0.000734643,1.289646579,"up","--","--","--","--","[K]","Transcription ","Uncharacterized protein At5g08430 GN=At5g08430 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","K","Transcription","--"]
["EVM0019972",0.006008258,0.001082884,-3.873231793,"down","[IQ]","--","Molecular Function: 3-oxoacyl-[acyl-carrier-protein] synthase activity (GO:0004315);; Biological Process: fatty acid biosynthetic process (GO:0006633);; ","K09458|0|tcc:TCM_016498|3-ketoacyl-acyl carrier protein synthase I; K09458 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] (A)","[IQ]","--","3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic (Precursor) GN=KAS1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","H","Coenzyme transport and metabolism","--"]
["EVM0014369",{"v":6.97e-07,"d":"6.97E-07"},{"v":3.45e-08,"d":"3.45E-08"},-3.330263518,"down","--","--","--","--","[R]","General function prediction only ","Putative pentatricopeptide repeat-containing protein At1g26500 GN=At1g26500 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1","R","General function prediction only","--"]
["EVM0017848",0.0048876,0.00083828,1.08721942,"up","--","--","--","--","--","--","Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 GN=At3g12810 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","R","General function prediction only","--"]
["EVM0023099",0.003305481,0.000451621,-1.575748334,"up,down","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0026457",0.00084516,{"v":8.6e-05,"d":"8.60E-05"},-1.53399087,"down","[GC]","--","Molecular Function: transferase activity, transferring glycosyl groups (GO:0016757);; ","--","[GC]","--","Beta-D-glucosyl crocetin beta-1,6-glucosyltransferase GN=UGT94E5 OS=Gardenia jasminoides (Cape jasmine) PE=1 SV=1","G","Carbohydrate transport and metabolism","--"]
["EVM0012420",0.003305481,0.000451621,-1.575748334,"up,down","[R]","General function prediction only ","Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","[R]","General function prediction only ","Protein TOPLESS GN=F7H2.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","R","General function prediction only","--"]
["EVM0016899",{"v":4.69e-08,"d":"4.69E-08"},{"v":1.23e-09,"d":"1.23E-09"},2.255629445,"up","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0009484",0.006340017,0.001206158,1.325876238,"up","[RTKL]","--","Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: ATP binding (GO:0005524);; Biological Process: polysaccharide metabolic process (GO:0005976);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: steroid biosynthetic process (GO:0006694);; Biological Process: regulation of hormone levels (GO:0010817);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: cellular component organization (GO:0016043);; Biological Process: growth (GO:0040007);; Biological Process: single-organism developmental process (GO:0044767);; Biological Process: alcohol biosynthetic process (GO:0046165);; Biological Process: organ development (GO:0048513);; Biological Process: regulation of biological process (GO:0050789);; Biological Process: plant-type cell wall organization or biogenesis (GO:0071669);; ","--","--","--","Probable inactive receptor kinase At2g26730 (Precursor) GN=At2g26730 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","T","Signal transduction mechanisms","--"]
["EVM0009319",0.00280583,0.000350729,1.891294437,"up","[P]","Inorganic ion transport and metabolism ","Molecular Function: voltage-gated chloride channel activity (GO:0005247);; Biological Process: chloride transport (GO:0006821);; Molecular Function: nitrate:proton symporter activity (GO:0009671);; Cellular Component: plant-type vacuole membrane (GO:0009705);; Biological Process: response to nitrate (GO:0010167);; Biological Process: nitrate transport (GO:0015706);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: adenyl nucleotide binding (GO:0030554);; Biological Process: transmembrane transport (GO:0055085);; ","K05016|0|vvi:100260066|chloride channel ClC4; K05016 chloride channel 7 (A)","[P]","Inorganic ion transport and metabolism ","Chloride channel protein CLC-b GN=MYF5.4 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","P","Inorganic ion transport and metabolism","--"]
["Salvia_newGene_38865",{"v":4.33e-15,"d":"4.33E-15"},{"v":2.16e-17,"d":"2.16E-17"},-4.227019327,"down","--","--","--","--","--","--","Putative late blight resistance protein homolog R1A-4 GN=R1A-4 OS=Solanum demissum (Wild potato) PE=5 SV=2","T","Signal transduction mechanisms","hypothetical protein MIMGU_mgv1a022576mg, partial [Erythranthe guttata]"]
["EVM0024326",{"v":9.26e-06,"d":"9.26E-06"},{"v":5.92e-07,"d":"5.92E-07"},2.146060612,"up","[K]","Transcription ","--","--","[K]","Transcription ","--","K","Transcription","--"]
["EVM0027290",{"v":8e-07,"d":"8.00E-07"},{"v":4.19e-08,"d":"4.19E-08"},-2.320120972,"down","--","--","Biological Process: response to stimulus (GO:0050896);; ","--","--","--","S-norcoclaurine synthase (Precursor) OS=Thalictrum flavum subsp. glaucum (Yellow meadow rue) PE=1 SV=1","S","Function unknown","--"]
["Salvia_newGene_52828",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1A-6 GN=R1A-6 OS=Solanum demissum (Wild potato) PE=3 SV=2","T","Signal transduction mechanisms","hypothetical protein MIMGU_mgv1a020452mg [Erythranthe guttata]"]
["EVM0006430",0.0048876,0.00083828,1.08721942,"up","--","--","Biological Process: photosynthesis (GO:0015979);; Cellular Component: membrane (GO:0016020);; Biological Process: cellular protein metabolic process (GO:0044267);; Biological Process: single-organism transport (GO:0044765);; Biological Process: organic substance transport (GO:0071702);; ","--","--","--","F-box/kelch-repeat protein At5g43190 GN=At5g43190 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","--"]
["EVM0008449",0.004594858,0.000734643,1.289646579,"up","--","--","--","K07466|1.20435e-17|mtr:MTR_2g048560|Replication protein A 70 kDa DNA-binding subunit; K07466 replication factor A1 (A)","[L]","Replication, recombination and repair ","--","L","Replication, recombination and repair","--"]
["EVM0026994",{"v":1.77e-07,"d":"1.77E-07"},{"v":6.8e-09,"d":"6.80E-09"},1.982657973,"up","--","--","--","--","--","--","NAC domain-containing protein 100 GN=NAC100 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","--"]
["EVM0006252",{"v":4.69e-08,"d":"4.69E-08"},{"v":1.23e-09,"d":"1.23E-09"},2.255629445,"up","--","--","--","--","--","--","Putative late blight resistance protein homolog R1B-8 GN=R1B-8 OS=Solanum demissum (Wild potato) PE=5 SV=1","T","Signal transduction mechanisms","--"]
["EVM0014376",{"v":4.33e-15,"d":"4.33E-15"},{"v":3.83e-17,"d":"3.83E-17"},3.394700436,"up","[S]","Function unknown ","Molecular Function: exonuclease activity (GO:0004527);; ","K09122|0|sot:102592583|probable exonuclease mut-7 homolog; K09122 hypothetical protein (A)","[L]","Replication, recombination and repair ","--","L","Replication, recombination and repair","--"]
["EVM0005415",0.006008258,0.001082884,-3.873231793,"down","[L]","Replication, recombination and repair ","Molecular Function: nucleic acid binding (GO:0003676);; Biological Process: DNA metabolic process (GO:0006259);; Molecular Function: metal ion binding (GO:0046872);; ","--","[R]","General function prediction only ","Uncharacterized mitochondrial protein AtMg00860 GN=AtMg00860 OS=Arabidopsis thaliana (Mouse-ear cress) PE=4 SV=1","L","Replication, recombination and repair","--"]
["EVM0003942",0.0048876,0.00083828,1.08721942,"up","--","--","Molecular Function: binding (GO:0005488);; ","K10624|0|vvi:100854867|E3 ubiquitin-protein ligase RBBP6; K10624 E3 ubiquitin-protein ligase RBBP6 [EC:6.3.2.19] (A)","[O]","Posttranslational modification, protein turnover, chaperones ","E3 ubiquitin-protein ligase COP1 GN=COP1 OS=Pisum sativum (Garden pea) PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0024998",0.006008258,0.001082884,-3.873231793,"down","[R]","General function prediction only ","Molecular Function: GTP binding (GO:0005525);; Cellular Component: Golgi stack (GO:0005795);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: intracellular protein transport (GO:0006886);; Biological Process: small GTPase mediated signal transduction (GO:0007264);; Biological Process: cellulose biosynthetic process (GO:0030244);; Biological Process: Golgi vesicle transport (GO:0048193);; ","K07942|7.43597e-119|fve:101301576|ADP-ribosylation factor 1-like isoform 1; K07942 ADP-ribosylation factor-like protein 1 (A)","[U]","Intracellular trafficking, secretion, and vesicular transport ","ADP-ribosylation factor 1 GN=ARF1 OS=Brassica rapa subsp. pekinensis (Chinese cabbage) PE=2 SV=3","U","Intracellular trafficking, secretion, and vesicular transport","--"]
["EVM0019781",{"v":4.33e-15,"d":"4.33E-15"},{"v":3.83e-17,"d":"3.83E-17"},3.394700436,"up","[K]","Transcription ","--","K18758|0|sot:102589561|DIS3-like exonuclease 2-like; K18758 DIS3-like exonuclease 2 [EC:3.1.13.-] (A)","[J]","Translation, ribosomal structure and biogenesis ","DIS3-like exonuclease 2 {ECO:0000255|HAMAP-Rule:MF_03045} GN=SOV OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","J","Translation, ribosomal structure and biogenesis","--"]
["Salvia_newGene_23637",0.00280583,0.000350729,1.891294437,"up","--","--","Biological Process: mitotic cell cycle (GO:0000278);; Biological Process: cell morphogenesis involved in differentiation (GO:0000904);; Biological Process: organelle organization (GO:0006996);; Biological Process: post-embryonic development (GO:0009791);; Biological Process: cell tip growth (GO:0009932);; Cellular Component: membrane (GO:0016020);; Biological Process: regulation of growth (GO:0040008);; Biological Process: response to chemical (GO:0042221);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Cellular Component: cytoplasmic part (GO:0044444);; Biological Process: root development (GO:0048364);; Biological Process: developmental cell growth (GO:0048588);; Biological Process: regulation of cellular process (GO:0050794);; Biological Process: regulation of cellular component organization (GO:0051128);; ","--","[DZ]","--","Translationally-controlled tumor protein homolog GN=TCTP OS=Pisum sativum (Garden pea) PE=2 SV=2","DZ","--","PREDICTED: translationally-controlled tumor protein homolog isoform X1 [Phoenix dactylifera]"]
["EVM0016362",0.006340017,0.001203061,1.325876238,"up","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Molecular Function: monooxygenase activity (GO:0004497);; Molecular Function: iron ion binding (GO:0005506);; Molecular Function: electron carrier activity (GO:0009055);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705);; Molecular Function: heme binding (GO:0020037);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","[QI]","--","Cytochrome P450 72A14 GN=CYP72A14 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","--"]
["EVM0013856",0.006340017,0.001206158,1.325876238,"up","[R]","General function prediction only ","--","K06892|1.53772e-123|mdm:103445645|1-aminocyclopropane-1-carboxylate oxidase homolog 1-like; K06892 feruloyl-CoA ortho-hydroxylase [EC:1.14.11.-] (A)","[QR]","--","1-aminocyclopropane-1-carboxylate oxidase homolog 6 GN=At1g04350 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","--"]
["EVM0014497",0.006008258,0.001082884,-3.873231793,"down","[R]","General function prediction only ","Molecular Function: GTP binding (GO:0005525);; Cellular Component: Golgi stack (GO:0005795);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: intracellular protein transport (GO:0006886);; Biological Process: small GTPase mediated signal transduction (GO:0007264);; Biological Process: cellulose biosynthetic process (GO:0030244);; Biological Process: Golgi vesicle transport (GO:0048193);; ","K07942|4.47463e-117|pmum:103323457|ADP-ribosylation factor 1; K07942 ADP-ribosylation factor-like protein 1 (A)","[U]","Intracellular trafficking, secretion, and vesicular transport ","ADP-ribosylation factor 1 GN=ARF1 OS=Brassica rapa subsp. pekinensis (Chinese cabbage) PE=2 SV=3","U","Intracellular trafficking, secretion, and vesicular transport","--"]
["Salvia_newGene_54094",{"v":4.33e-15,"d":"4.33E-15"},{"v":2.16e-17,"d":"2.16E-17"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1A-6 GN=R1A-6 OS=Solanum demissum (Wild potato) PE=3 SV=2","T","Signal transduction mechanisms","hypothetical protein MIMGU_mgv1a018989mg [Erythranthe guttata]"]
["EVM0009616",{"v":4.33e-15,"d":"4.33E-15"},{"v":2.16e-17,"d":"2.16E-17"},-4.227019327,"up,down","[R]","General function prediction only ","--","K03070|0|sly:101256051|protein translocase subunit SECA2, chloroplastic; K03070 preprotein translocase subunit SecA (A)","--","--","Guanine nucleotide-binding protein subunit beta-like protein GN=ARCA OS=Nicotiana tabacum (Common tobacco) PE=2 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","--"]
["EVM0016575",0.003617439,0.000544916,-1.575748334,"up,down","--","--","Biological Process: fatty acid biosynthetic process (GO:0006633);; Cellular Component: chloroplast (GO:0009507);; Molecular Function: acyl-[acyl-carrier-protein] desaturase activity (GO:0045300);; Molecular Function: transition metal ion binding (GO:0046914);; Biological Process: oxidation-reduction process (GO:0055114);; ","K03921|0|cit:102619477|acyl-[acyl-carrier-protein] desaturase, chloroplastic-like; K03921 acyl-[acyl-carrier-protein] desaturase [EC:1.14.19.2] (A)","--","--","Acyl-[acyl-carrier-protein] desaturase, chloroplastic (Precursor) OS=Ricinus communis (Castor bean) PE=1 SV=1","I","Lipid transport and metabolism","--"]
["Salvia_newGene_84547",0.003617439,0.000544916,-1.575748334,"up,down","--","--","--","--","--","--","--","--","--","hypothetical protein MIMGU_mgv1a008608mg [Erythranthe guttata]"]
["EVM0028061",0.006340017,0.001206158,1.325876238,"up","--","--","Biological Process: response to stimulus (GO:0050896);; ","--","--","--","Calvin cycle protein CP12-1, chloroplastic (Precursor) GN=CP12-1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","R","General function prediction only","--"]
["EVM0021239",0.0048876,0.00083828,1.08721942,"up,down","[KLB]","--","Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleus (GO:0005634);; Cellular Component: chromosome (GO:0005694);; Biological Process: DNA replication (GO:0006260);; Biological Process: DNA repair (GO:0006281);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: 2-alkenal reductase [NAD(P)] activity (GO:0032440);; Biological Process: oxidation-reduction process (GO:0055114);; ","K09272|0|cic:CICLE_v10011266mg|hypothetical protein; K09272 structure-specific recognition protein 1 (A)","[KLB]","--","FACT complex subunit SSRP1 GN=SSRP1 OS=Vicia faba (Broad bean) PE=2 SV=1","K","Transcription","--"]
["EVM0011531",0.000131541,{"v":1.15e-05,"d":"1.15E-05"},1.780467443,"up","--","--","Molecular Function: catalytic activity (GO:0003824);; ","--","--","--","Glucan endo-1,3-beta-glucosidase (Precursor) OS=Glycine max (Soybean) PE=1 SV=1","R","General function prediction only","--"]
["EVM0007312",0.006008258,0.001082884,-3.873231793,"down","[KL]","--","Biological Process: microtubule cytoskeleton organization (GO:0000226);; Biological Process: cytokinesis by cell plate formation (GO:0000911);; Molecular Function: DNA binding (GO:0003677);; Molecular Function: helicase activity (GO:0004386);; Molecular Function: ATP binding (GO:0005524);; Biological Process: gravitropism (GO:0009630);; Biological Process: vernalization response (GO:0010048);; ","K10779|0|cmo:103485842|transcriptional regulator ATRX; K10779 transcriptional regulator ATRX [EC:3.6.4.12] (A)","[K]","Transcription ","Protein CHROMATIN REMODELING 20 {ECO:0000303|PubMed:16547115} OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","K","Transcription","--"]
["EVM0011341",0.006008258,0.001082884,-3.873231793,"down","--","--","--","--","[R]","General function prediction only ","Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial (Precursor) GN=At1g12700 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1","R","General function prediction only","--"]
["EVM0022401",0.006008258,0.001082884,-3.873231793,"down","[RTKL]","--","Molecular Function: kinase activity (GO:0016301);; ","--","--","--","Cysteine-rich receptor-like protein kinase 8 (Precursor) GN=CRK8 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=2","T","Signal transduction mechanisms","--"]
["Salvia_newGene_54503",{"v":4.33e-15,"d":"4.33E-15"},{"v":2.16e-17,"d":"2.16E-17"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1A-6 GN=R1A-6 OS=Solanum demissum (Wild potato) PE=3 SV=2","T","Signal transduction mechanisms","PREDICTED: putative late blight resistance protein homolog R1B-16 [Sesamum indicum]"]
["EVM0005986",{"v":4.69e-08,"d":"4.69E-08"},{"v":1.23e-09,"d":"1.23E-09"},2.255629445,"up","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Molecular Function: copper ion binding (GO:0005507);; Biological Process: lignin catabolic process (GO:0046274);; Cellular Component: apoplast (GO:0048046);; Molecular Function: hydroquinone:oxygen oxidoreductase activity (GO:0052716);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Laccase-1 (Precursor) GN=LAC1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","--"]
["EVM0017189",0.006008258,0.001082884,-3.873231793,"down","[R]","General function prediction only ","Cellular Component: plasma membrane (GO:0005886);; Cellular Component: plasmodesma (GO:0009506);; Molecular Function: FMN binding (GO:0010181);; Biological Process: negative regulation of transcription, DNA-templated (GO:0045892);; Molecular Function: 2-hydroxy-1,4-benzoquinone reductase activity (GO:0050625);; Biological Process: oxidation-reduction process (GO:0055114);; ","K03809|7.88252e-76|gmx:100499870|uncharacterized LOC100499870; K03809 Trp repressor binding protein (A)","[R]","General function prediction only ","Probable NAD(P)H dehydrogenase (quinone) FQR1-like 1 {ECO:0000305} OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","--"]
["EVM0015887",{"v":6.97e-07,"d":"6.97E-07"},{"v":3.45e-08,"d":"3.45E-08"},-3.330263518,"down","--","--","--","--","--","--","--","P","Inorganic ion transport and metabolism","--"]
["Salvia_newGene_141",0.001255966,0.00013874,1.248541407,"up","--","--","Molecular Function: nucleic acid binding (GO:0003676);; Molecular Function: hydrolase activity, acting on glycosyl bonds (GO:0016798);; Biological Process: cellular macromolecule metabolic process (GO:0044260);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: nucleic acid metabolic process (GO:0090304);; ","--","[R]","General function prediction only ","Endonuclease OS=Nicotiana tabacum (Common tobacco) PE=2 SV=1","R","General function prediction only","gag-pol polyprotein [Eustoma exaltatum subsp. russellianum]"]
["EVM0025862",{"v":9.26e-06,"d":"9.26E-06"},{"v":5.92e-07,"d":"5.92E-07"},2.146060612,"up","[G]","Carbohydrate transport and metabolism ","Biological Process: L-arabinose metabolic process (GO:0046373);; Molecular Function: alpha-L-arabinofuranosidase activity (GO:0046556);; ","K01209|0|sot:102581676|alpha-L-arabinofuranosidase 1-like; K01209 alpha-N-arabinofuranosidase [EC:3.2.1.55] (A)","--","--","Alpha-L-arabinofuranosidase 1 (Precursor) GN=T7M13.18 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","G","Carbohydrate transport and metabolism","--"]
["EVM0013582",0.000834612,{"v":8.25e-05,"d":"8.25E-05"},-1.278991609,"down","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0015309",{"v":1.77e-07,"d":"1.77E-07"},{"v":6.8e-09,"d":"6.80E-09"},1.982657973,"up","[RTKL]","--","Molecular Function: protein kinase activity (GO:0004672);; ","--","[T]","Signal transduction mechanisms ","Probable receptor-like protein kinase At5g24010 (Precursor) GN=At5g24010 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","T","Signal transduction mechanisms","--"]
["EVM0023283",{"v":4.69e-08,"d":"4.69E-08"},{"v":1.23e-09,"d":"1.23E-09"},2.255629445,"up","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","--","--","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Laccase-11 (Precursor) OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","--"]
["EVM0014476",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Late blight resistance protein R1-A GN=R1A OS=Solanum demissum (Wild potato) PE=3 SV=1","T","Signal transduction mechanisms","--"]
["Salvia_newGene_34799",0.006340017,0.001206158,1.325876238,"up","--","--","--","--","--","--","--","--","--","2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Salvia miltiorrhiza]"]
["EVM0000237",0.00084516,{"v":8.6e-05,"d":"8.60E-05"},-1.53399087,"down","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0001679",0.002108628,0.000251319,1.378487044,"up","[V]","Defense mechanisms ","--","--","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Pleiotropic drug resistance protein 2 GN=PDR2 OS=Nicotiana plumbaginifolia (Leadwort-leaved tobacco) PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","--"]
["EVM0022552",{"v":4.69e-08,"d":"4.69E-08"},{"v":1.23e-09,"d":"1.23E-09"},2.255629445,"up","[RTKL]","--","Molecular Function: calmodulin-dependent protein kinase activity (GO:0004683);; Molecular Function: calcium ion binding (GO:0005509);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; ","K13412|0|pmum:103339562|calcium-dependent protein kinase 26; K13412 calcium-dependent protein kinase [EC:2.7.11.1] (A)","[T]","Signal transduction mechanisms ","Calcium-dependent protein kinase 1 GN=MUK11.19 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","Z","Cytoskeleton","--"]
["EVM0012256",0.00280583,0.000350729,1.891294437,"up","[P]","Inorganic ion transport and metabolism ","--","K03549|0|tcc:TCM_017384|K+ uptake transporter 3 isoform 1; K03549 KUP system potassium uptake protein (A)","--","--","Potassium transporter 4 GN=F1C9.17 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","P","Inorganic ion transport and metabolism","--"]
["Salvia_newGene_46760",0.000870664,{"v":9.36e-05,"d":"9.36E-05"},-1.307666533,"down","--","--","Molecular Function: nucleotide binding (GO:0000166);; Molecular Function: DNA-directed RNA polymerase activity (GO:0003899);; Biological Process: transcription, DNA-templated (GO:0006351);; ","--","[K]","Transcription ","--","K","Transcription","PREDICTED: DNA-directed RNA polymerase III subunit RPC9-like [Sesamum indicum] "]
["EVM0012527",{"v":1.77e-07,"d":"1.77E-07"},{"v":6.8e-09,"d":"6.80E-09"},1.982657973,"up","--","--","Biological Process: cellular protein metabolic process (GO:0044267);; Molecular Function: metal ion binding (GO:0046872);; ","--","[K]","Transcription ","E3 ubiquitin-protein ligase SINA-like 10 GN=At5g37930 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","--"]
["EVM0014061",0.000870664,{"v":9.36e-05,"d":"9.36E-05"},-1.307666533,"down","--","--","--","--","[R]","General function prediction only ","Pentatricopeptide repeat-containing protein At1g80150, mitochondrial (Precursor) GN=At1g80150 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","R","General function prediction only","--"]
["EVM0013805",{"v":4.33e-15,"d":"4.33E-15"},{"v":2.16e-17,"d":"2.16E-17"},-4.227019327,"down","[RTKL]","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: protein serine/threonine/tyrosine kinase activity (GO:0004712);; Molecular Function: protein tyrosine kinase activity (GO:0004713);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: cytosol (GO:0005829);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: actin filament organization (GO:0007015);; Biological Process: chloroplast organization (GO:0009658);; Molecular Function: amino acid binding (GO:0016597);; ","--","[T]","Signal transduction mechanisms ","Serine/threonine-protein kinase HT1 GN=HT1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","T","Signal transduction mechanisms","--"]
["EVM0016154",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1B-16 GN=R1B-16 OS=Solanum demissum (Wild potato) PE=3 SV=1","T","Signal transduction mechanisms","--"]
["EVM0006608",{"v":4.33e-15,"d":"4.33E-15"},{"v":2.16e-17,"d":"2.16E-17"},-4.227019327,"down","--","--","Molecular Function: serine-type endopeptidase inhibitor activity (GO:0004867);; Cellular Component: cell wall (GO:0005618);; Biological Process: response to wounding (GO:0009611);; Biological Process: negative regulation of peptidase activity (GO:0010466);; Biological Process: proline transport (GO:0015824);; Biological Process: defense response to fungus (GO:0050832);; ","--","--","--","Proteinase inhibitor OS=Linum usitatissimum (Flax) PE=1 SV=1","--","--","--"]
["EVM0020549",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1B-16 GN=R1B-16 OS=Solanum demissum (Wild potato) PE=3 SV=1","T","Signal transduction mechanisms","--"]
["Salvia_newGene_81198",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1B-17 GN=R1B-17 OS=Solanum demissum (Wild potato) PE=3 SV=1","T","Signal transduction mechanisms","hypothetical protein MIMGU_mgv1a022176mg, partial [Erythranthe guttata]"]
["EVM0011747",{"v":9.26e-06,"d":"9.26E-06"},{"v":5.92e-07,"d":"5.92E-07"},2.146060612,"up","[L]","Replication, recombination and repair ","Molecular Function: nucleic acid binding (GO:0003676);; Biological Process: DNA metabolic process (GO:0006259);; ","--","[R]","General function prediction only ","--","R","General function prediction only","--"]
["EVM0007485",0.0048876,0.00083828,1.08721942,"up","[Z]","Cytoskeleton ","Molecular Function: nucleotide binding (GO:0000166);; Cellular Component: microtubule cytoskeleton (GO:0015630);; Cellular Component: protein complex (GO:0043234);; Cellular Component: cytoskeletal part (GO:0044430);; ","K10406|0|tcc:TCM_004734|P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin ) domain isoform 1; K10406 kinesin family member C2/C3 (A)","[Z]","Cytoskeleton ","Kinesin-4 GN=F2P16.12 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","Z","Cytoskeleton","--"]
["EVM0012267",{"v":4.69e-08,"d":"4.69E-08"},{"v":1.23e-09,"d":"1.23E-09"},2.255629445,"up","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Molecular Function: copper ion binding (GO:0005507);; Biological Process: lignin catabolic process (GO:0046274);; Cellular Component: apoplast (GO:0048046);; Molecular Function: hydroquinone:oxygen oxidoreductase activity (GO:0052716);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Laccase-17 (Precursor) GN=LAC17 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","--"]
["EVM0013913",0.00280583,0.000350729,1.891294437,"up","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","--","--","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Cytochrome P450 81E8 {ECO:0000303|PubMed:14617078} OS=Medicago truncatula (Barrel medic) PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","--"]
["EVM0018613",{"v":9.26e-06,"d":"9.26E-06"},{"v":5.92e-07,"d":"5.92E-07"},2.146060612,"up","--","--","--","--","--","--","Transcription factor TCP3 GN=TCP3 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","K","Transcription","--"]
["EVM0001176",0.0048876,0.00083828,1.08721942,"up","--","--","--","--","--","--","Probable WRKY transcription factor 19 GN=WRKY19 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","--"]
["EVM0006258",0.006340017,0.001206158,1.325876238,"up","--","--","--","--","[K]","Transcription ","Agamous-like MADS-box protein AGL61 GN=F27C12.24 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","K","Transcription","--"]
["EVM0006589",0.00084516,{"v":8.6e-05,"d":"8.60E-05"},-1.53399087,"down","--","--","--","--","[R]","General function prediction only ","Pentatricopeptide repeat-containing protein At1g80550, mitochondrial (Precursor) GN=At1g80550 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","--"]
["EVM0022772",{"v":4.33e-15,"d":"4.33E-15"},{"v":3.83e-17,"d":"3.83E-17"},3.394700436,"up","[T]","Signal transduction mechanisms ","Biological Process: response to reactive oxygen species (GO:0000302);; Molecular Function: translation elongation factor activity (GO:0003746);; Molecular Function: GTPase activity (GO:0003924);; Molecular Function: GTP binding (GO:0005525);; Biological Process: GTP catabolic process (GO:0006184);; Biological Process: translational elongation (GO:0006414);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: regulation of gene expression (GO:0010468);; Biological Process: chloroplast RNA processing (GO:0031425);; ","K06207|0|gmx:100785222|translation factor GUF1 homolog, mitochondrial-like; K06207 GTP-binding protein (A)","[J]","Translation, ribosomal structure and biogenesis ","Translation factor GUF1 homolog, mitochondrial {ECO:0000255|HAMAP-Rule:MF_03137} (Precursor) GN=THAPSDRAFT_40001 OS=Thalassiosira pseudonana (Marine diatom) PE=3 SV=1","J","Translation, ribosomal structure and biogenesis","--"]
["EVM0002402",0.001255966,0.00013874,1.248541407,"up","[S]","Function unknown ","--","K13457|1.41414e-70|pop:POPTR_0003s14960g|POPTRDRAFT_554585; disease resistance family protein; K13457 disease resistance protein RPM1 (A)","[T]","Signal transduction mechanisms ","Disease resistance RPP8-like protein 3 GN=RPP8L3 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","T","Signal transduction mechanisms","--"]
["EVM0020261",0.004594858,0.000734643,1.289646579,"up","--","--","--","--","[R]","General function prediction only ","Pentatricopeptide repeat-containing protein At5g08510 GN=PCMP-E20 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","--"]
["Salvia_newGene_43299",0.003617439,0.000546822,-1.266778259,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1C-3 GN=R1C-3 OS=Solanum demissum (Wild potato) PE=3 SV=1","T","Signal transduction mechanisms","hypothetical protein MIMGU_mgv1a024130mg [Erythranthe guttata]"]
["Salvia_newGene_1450",0.002108628,0.000251319,1.378487044,"up","--","--","--","--","--","--","--","S","Function unknown","Uncharacterized protein TCM_012672 [Theobroma cacao] "]
["EVM0018549",{"v":4.33e-15,"d":"4.33E-15"},{"v":3.83e-17,"d":"3.83E-17"},3.394700436,"up","--","--","--","--","[R]","General function prediction only ","Protein NUCLEAR FUSION DEFECTIVE 5, mitochondrial (Precursor) GN=NFD5 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","--"]
["EVM0017085",{"v":4.33e-15,"d":"4.33E-15"},{"v":2.16e-17,"d":"2.16E-17"},-4.227019327,"down","[R]","General function prediction only ","Cellular Component: nucleus (GO:0005634);; Molecular Function: myosin heavy chain kinase activity (GO:0016905);; ","K14855|0|sly:101261215|notchless protein homolog; K14855 ribosome assembly protein 4 (A)","[S]","Function unknown ","Notchless protein homolog GN=NLE1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","--"]
["Salvia_newGene_76631",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1C-3 GN=R1C-3 OS=Solanum demissum (Wild potato) PE=3 SV=1","T","Signal transduction mechanisms","hypothetical protein MIMGU_mgv1a018989mg [Erythranthe guttata]"]
["EVM0018490",0.003617439,0.000544916,-1.575748334,"up,down","--","--","--","--","--","--","--","C","Energy production and conversion","--"]
["EVM0007205",0.000859097,{"v":8.99e-05,"d":"8.99E-05"},1.605568787,"up","--","--","--","--","[R]","General function prediction only ","Auxilin-like protein 1 GN=AUL1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0016124",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1B-17 GN=R1B-17 OS=Solanum demissum (Wild potato) PE=3 SV=1","T","Signal transduction mechanisms","--"]
["EVM0016352",{"v":4.33e-15,"d":"4.33E-15"},{"v":2.16e-17,"d":"2.16E-17"},-4.227019327,"down","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0006942",0.00084516,{"v":8.6e-05,"d":"8.60E-05"},-1.53399087,"down","--","--","--","--","[U]","Intracellular trafficking, secretion, and vesicular transport ","Type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2 GN=CVP2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","U","Intracellular trafficking, secretion, and vesicular transport","--"]
["EVM0012311",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1A-6 GN=R1A-6 OS=Solanum demissum (Wild potato) PE=3 SV=2","T","Signal transduction mechanisms","--"]
["EVM0006850",0.001435248,0.000164806,1.255222109,"up","[O]","Posttranslational modification, protein turnover, chaperones ","--","K14826|4.24063e-21|pxb:103952923|peptidyl-prolyl cis-trans isomerase FKBP43-like; K14826 FK506-binding nuclear protein [EC:5.2.1.8] (A)","[O]","Posttranslational modification, protein turnover, chaperones ","Peptidyl-prolyl cis-trans isomerase FKBP15-3 GN=FKBP15-3 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0023688",{"v":1.77e-07,"d":"1.77E-07"},{"v":6.8e-09,"d":"6.80E-09"},1.982657973,"up","--","--","--","--","[R]","General function prediction only ","--","S","Function unknown","--"]
["EVM0017356",0.006008258,0.001082884,-3.873231793,"down","--","--","--","--","--","--","Methyl-CpG-binding domain-containing protein 9 GN=MBD9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","--"]
["EVM0026062",0.006008258,0.001082884,-3.873231793,"down","--","--","--","--","--","--","Proton pump-interactor 1 GN=PPI1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","S","Function unknown","--"]
["EVM0003512",0.006008258,0.001082884,-3.873231793,"down","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0002769",0.003617439,0.000544916,-1.575748334,"up,down","--","--","Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: auxin-activated signaling pathway (GO:0009734);; Molecular Function: protein dimerization activity (GO:0046983);; ","--","--","--","Auxin response factor 8 GN=K15O15.5 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","K","Transcription","--"]
["EVM0019862",{"v":6.97e-07,"d":"6.97E-07"},{"v":3.45e-08,"d":"3.45E-08"},-3.330263518,"down","--","--","Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511);; Biological Process: multicellular organismal development (GO:0007275);; Biological Process: reproductive process (GO:0022414);; Cellular Component: intracellular part (GO:0044424);; Biological Process: anatomical structure development (GO:0048856);; ","--","--","--","F-box/LRR-repeat protein 17 GN=FBL17 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","R","General function prediction only","--"]
["EVM0013257",0.001255966,0.00013874,1.248541407,"up","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Molecular Function: iron ion binding (GO:0005506);; Molecular Function: electron carrier activity (GO:0009055);; Biological Process: ent-kaurene oxidation to kaurenoic acid (GO:0010241);; Molecular Function: heme binding (GO:0020037);; Molecular Function: ent-kaurene oxidase activity (GO:0052615);; Molecular Function: ent-kaur-16-en-19-ol oxidase activity (GO:0052616);; Molecular Function: ent-kaur-16-en-19-al oxidase activity (GO:0052617);; ","K04122|0|sly:101267112|ent-kaurene oxidase, chloroplastic; K04122 ent-kaurene oxidase [EC:1.14.13.78] (A)","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Ent-kaurene oxidase, chloroplastic GN=T1N24.23 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","Q","Secondary metabolites biosynthesis, transport and catabolism","--"]
["EVM0014751",0.002108628,0.000251319,-3.873231793,"up,down","--","--","--","--","[R]","General function prediction only ","--","S","Function unknown","--"]
["EVM0008355",0.006340017,0.001206158,1.325876238,"up","--","--","--","--","[R]","General function prediction only ","--","R","General function prediction only","--"]
["Salvia_newGene_81482",0.001255966,0.00013874,1.248541407,"up","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1B-17 GN=R1B-17 OS=Solanum demissum (Wild potato) PE=3 SV=1","T","Signal transduction mechanisms","hypothetical protein MIMGU_mgv1a023002mg [Erythranthe guttata]"]
["EVM0011928",{"v":4.33e-15,"d":"4.33E-15"},{"v":2.16e-17,"d":"2.16E-17"},-4.227019327,"down","--","--","--","--","--","--","Putative nuclear matrix constituent protein 1-like protein GN=At5g65770 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","--"]
["EVM0025244",0.006008258,0.001082884,-3.873231793,"down","[RTKL]","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: calcium ion binding (GO:0005509);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; ","K13412|0|sly:101260188|calcium-dependent protein kinase 32-like; K13412 calcium-dependent protein kinase [EC:2.7.11.1] (A)","[T]","Signal transduction mechanisms ","Calcium-dependent protein kinase 8 GN=F7K24.200 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","T","Signal transduction mechanisms","--"]
["Salvia_newGene_52607",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1C-3 GN=R1C-3 OS=Solanum demissum (Wild potato) PE=3 SV=1","T","Signal transduction mechanisms","PREDICTED: putative late blight resistance protein homolog R1B-16 [Sesamum indicum]"]
["EVM0027046",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1B-16 GN=R1B-16 OS=Solanum demissum (Wild potato) PE=3 SV=1","T","Signal transduction mechanisms","--"]
["EVM0018908",0.000870664,{"v":9.36e-05,"d":"9.36E-05"},-1.307666533,"down","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0005335",{"v":4.33e-15,"d":"4.33E-15"},{"v":2.16e-17,"d":"2.16E-17"},-4.227019327,"down","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0025513",0.0048876,0.00083828,1.08721942,"up","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0016804",0.006340017,0.001203061,1.325876238,"up","--","--","--","--","--","--","WEB family protein At2g40480 GN=At2g40480 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","--"]
["EVM0021906",0.006008258,0.001082884,-3.873231793,"down","--","--","Molecular Function: binding (GO:0005488);; ","--","[TU]","--","Probable clathrin assembly protein At4g32285 GN=At4g32285 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","F","Nucleotide transport and metabolism","--"]
["EVM0028045",0.003617439,0.000544916,-1.575748334,"up,down","[O]","Posttranslational modification, protein turnover, chaperones ","Biological Process: response to stress (GO:0006950);; Biological Process: response to organic substance (GO:0010033);; Molecular Function: transferase activity (GO:0016740);; Biological Process: primary metabolic process (GO:0044238);; Biological Process: cellular catabolic process (GO:0044248);; Biological Process: single-organism metabolic process (GO:0044710);; Biological Process: organic substance catabolic process (GO:1901575);; ","K00799|8.69475e-75|vvi:100264838|probable glutathione S-transferase; K00799 glutathione S-transferase [EC:2.5.1.18] (A)","[O]","Posttranslational modification, protein turnover, chaperones ","Probable glutathione S-transferase OS=Nicotiana tabacum (Common tobacco) PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0017328",0.006008258,0.001082884,1.325876238,"up,down","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Molecular Function: monooxygenase activity (GO:0004497);; Molecular Function: iron ion binding (GO:0005506);; Molecular Function: electron carrier activity (GO:0009055);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705);; Molecular Function: heme binding (GO:0020037);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","[QI]","--","Cytochrome P450 CYP72A219 OS=Panax ginseng (Korean ginseng) PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","--"]
["EVM0002395",0.006008258,0.001082884,-3.873231793,"down","[J]","Translation, ribosomal structure and biogenesis ","--","K14569|0|pmum:103335886|ribosome biogenesis protein BMS1 homolog; K14569 ribosome biogenesis protein BMS1 (A)","[J]","Translation, ribosomal structure and biogenesis ","--","J","Translation, ribosomal structure and biogenesis","--"]
["EVM0011074",0.000870664,{"v":9.36e-05,"d":"9.36E-05"},-1.307666533,"down","--","--","--","K13457|2.83385e-143|pop:POPTR_0003s14960g|POPTRDRAFT_554585; disease resistance family protein; K13457 disease resistance protein RPM1 (A)","[T]","Signal transduction mechanisms ","Disease resistance RPP8-like protein 3 GN=RPP8L3 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","T","Signal transduction mechanisms","--"]
["EVM0016175",{"v":8e-07,"d":"8.00E-07"},{"v":4.19e-08,"d":"4.19E-08"},-2.320120972,"down","--","--","--","K14169|0|sly:101255447|cytoplasmic tRNA 2-thiolation protein 2; K14169 cytoplasmic tRNA 2-thiolation protein 2 (A)","[S]","Function unknown ","Cytoplasmic tRNA 2-thiolation protein 2 {ECO:0000255|HAMAP-Rule:MF_03054} GN=At4g35910 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=3","S","Function unknown","--"]
["EVM0027642",0.0048876,0.00083828,1.08721942,"up","--","--","--","--","--","--","F-box only protein 6 GN=FBX6 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","--"]
["EVM0001962",0.006008258,0.001082884,-3.873231793,"down","--","--","--","--","--","--","--","R","General function prediction only","--"]
["EVM0013591",{"v":6.97e-07,"d":"6.97E-07"},{"v":3.45e-08,"d":"3.45E-08"},-3.330263518,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative disease resistance protein RGA3 GN=RGA3 OS=Solanum bulbocastanum (Wild potato) PE=2 SV=2","T","Signal transduction mechanisms","--"]
["EVM0005300",0.006008258,0.001082884,-3.873231793,"down","[L]","Replication, recombination and repair ","Molecular Function: organic cyclic compound binding (GO:0097159);; Molecular Function: heterocyclic compound binding (GO:1901363);; ","K08736|0|sly:101248748|DNA mismatch repair protein MSH3; K08736 DNA mismatch repair protein MSH3 (A)","[L]","Replication, recombination and repair ","DNA mismatch repair protein MSH3 GN=MSH3 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","L","Replication, recombination and repair","--"]
["EVM0022648",0.006008258,0.001082884,-3.873231793,"down","--","--","--","--","[R]","General function prediction only ","Pentatricopeptide repeat-containing protein At3g46610 GN=At3g46610 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","--"]
["EVM0005060",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1A-6 GN=R1A-6 OS=Solanum demissum (Wild potato) PE=3 SV=2","T","Signal transduction mechanisms","--"]
["EVM0003861",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1B-13 GN=R1B-13 OS=Solanum demissum (Wild potato) PE=3 SV=1","T","Signal transduction mechanisms","--"]
["EVM0014608",0.0048876,0.00083828,1.08721942,"up","--","--","--","K01051|0|sot:102592413|putative pectinesterase/pectinesterase inhibitor 28-like; K01051 pectinesterase [EC:3.1.1.11] (A)","--","--","Pectinesterase 58 (Precursor) GN=K21P3.5 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","--"]
["EVM0000380",0.000859097,{"v":8.99e-05,"d":"8.99E-05"},1.605568787,"up","[RTKL]","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: calcium ion binding (GO:0005509);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein phosphorylation (GO:0006468);; ","K13412|0|pop:POPTR_0021s00750g|hypothetical protein; K13412 calcium-dependent protein kinase [EC:2.7.11.1] (A)","[T]","Signal transduction mechanisms ","Calcium-dependent protein kinase 2 GN=CPK2 OS=Zea mays (Maize) PE=2 SV=1","T","Signal transduction mechanisms","--"]
["Salvia_newGene_54488",{"v":4.33e-15,"d":"4.33E-15"},{"v":2.16e-17,"d":"2.16E-17"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1A-6 GN=R1A-6 OS=Solanum demissum (Wild potato) PE=3 SV=2","T","Signal transduction mechanisms","PREDICTED: putative late blight resistance protein homolog R1B-16 [Sesamum indicum]"]
["EVM0027241",{"v":9.26e-06,"d":"9.26E-06"},{"v":5.92e-07,"d":"5.92E-07"},2.146060612,"up","--","--","--","--","--","--","Putative E3 ubiquitin-protein ligase XBAT35 GN=XBAT35 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0025041",0.00280583,0.000350729,1.891294437,"up","--","--","--","--","--","--","--","R","General function prediction only","--"]
["EVM0003331",0.002108628,0.000251319,1.378487044,"up","[J]","Translation, ribosomal structure and biogenesis ","--","--","[A]","RNA processing and modification ","--","A","RNA processing and modification","--"]
["EVM0017838",0.00084516,{"v":8.6e-05,"d":"8.60E-05"},-1.53399087,"down","--","--","--","--","[O]","Posttranslational modification, protein turnover, chaperones ","RING-H2 finger protein ATL38 GN=ATL38 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","--"]
["Salvia_newGene_90297",0.000870664,{"v":9.36e-05,"d":"9.36E-05"},-1.307666533,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Disease resistance protein RGA2 GN=RGA2 OS=Solanum bulbocastanum (Wild potato) PE=1 SV=1","T","Signal transduction mechanisms","hypothetical protein MIMGU_mgv1a000405mg [Erythranthe guttata]"]
["EVM0025803",0.006008258,0.001082884,-3.873231793,"down","[V]","Defense mechanisms ","Molecular Function: ATP binding (GO:0005524);; Biological Process: ATP catabolic process (GO:0006200);; Cellular Component: chloroplast envelope (GO:0009941);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: ATPase activity, coupled to transmembrane movement of substances (GO:0042626);; Biological Process: transmembrane transport (GO:0055085);; ","--","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","ABC transporter B family member 28 GN=M7J2.180 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","--"]
["EVM0021250",0.006008258,0.001082884,-3.873231793,"down","--","--","--","--","[R]","General function prediction only ","Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial (Precursor) GN=At1g12700 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1","R","General function prediction only","--"]
["EVM0018244",0.000870664,{"v":9.36e-05,"d":"9.36E-05"},-1.307666533,"down","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0001584",0.0048876,0.00083828,1.08721942,"up","--","--","--","--","--","--","WUSCHEL-related homeobox 1 GN=WOX1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","K","Transcription","--"]
["EVM0007677",{"v":8.08e-06,"d":"8.08E-06"},{"v":4.7e-07,"d":"4.70E-07"},1.894718978,"up","--","--","--","--","[R]","General function prediction only ","Putative pentatricopeptide repeat-containing protein At5g09950 GN=PCMP-H35 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1","R","General function prediction only","--"]
["EVM0020291",{"v":1.77e-07,"d":"1.77E-07"},{"v":6.8e-09,"d":"6.80E-09"},1.982657973,"up","--","--","--","--","--","--","NAC domain-containing protein 100 GN=NAC100 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","--"]
["EVM0010326",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1B-14 GN=R1B-14 OS=Solanum demissum (Wild potato) PE=3 SV=1","T","Signal transduction mechanisms","--"]
["EVM0021025",0.006340017,0.001206158,1.325876238,"up","--","--","Biological Process: transport (GO:0006810);; Cellular Component: integral component of membrane (GO:0016021);; ","--","[I]","Lipid transport and metabolism ","Patellin-6 GN=PATL6 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","I","Lipid transport and metabolism","--"]
["Salvia_newGene_81127",0.004594858,0.000734643,1.289646579,"up","--","--","Molecular Function: motor activity (GO:0003774);; Molecular Function: actin binding (GO:0003779);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: myosin complex (GO:0016459);; ","K10357|2.25458e-22|pop:POPTR_0001s23960g|hypothetical protein; K10357 myosin V (A)","[Z]","Cytoskeleton ","Myosin-12 GN=F20M17.6 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","Z","Cytoskeleton","hypothetical protein MIMGU_mgv1a0258112mg, partial [Erythranthe guttata]"]
["EVM0016012",0.006008258,0.001082884,-3.873231793,"down","[C]","Energy production and conversion ","Molecular Function: betaine-aldehyde dehydrogenase activity (GO:0008802);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00130|0|pper:PRUPE_ppa004563mg|hypothetical protein; K00130 betaine-aldehyde dehydrogenase [EC:1.2.1.8] (A)","[C]","Energy production and conversion ","Betaine aldehyde dehydrogenase 1, chloroplastic (Precursor) OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","C","Energy production and conversion","--"]
["Salvia_newGene_43012",{"v":4.33e-15,"d":"4.33E-15"},{"v":2.16e-17,"d":"2.16E-17"},-4.227019327,"down","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC104601398 [Nelumbo nucifera]"]
["EVM0007328",0.006008258,0.001082884,-3.873231793,"down","--","--","--","--","[R]","General function prediction only ","Pentatricopeptide repeat-containing protein At1g05670, mitochondrial (Precursor) GN=At1g05670 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","--"]
["EVM0011145",{"v":6.97e-07,"d":"6.97E-07"},{"v":3.45e-08,"d":"3.45E-08"},-3.330263518,"down","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0003603",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1A-6 GN=R1A-6 OS=Solanum demissum (Wild potato) PE=3 SV=2","T","Signal transduction mechanisms","--"]
["EVM0018361",{"v":4.33e-15,"d":"4.33E-15"},{"v":2.16e-17,"d":"2.16E-17"},-4.227019327,"down","--","--","--","K13459|1.49049e-120|vvi:100258875|probable disease resistance protein At4g27220; K13459 disease resistance protein RPS2 (A)","[T]","Signal transduction mechanisms ","Putative disease resistance protein At4g10780 GN=At4g10780 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1","T","Signal transduction mechanisms","--"]
["EVM0021363",0.001255966,0.00013874,1.248541407,"up","[S]","Function unknown ","--","--","[R]","General function prediction only ","Plant intracellular Ras-group-related LRR protein 1 GN=PIRL1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","--"]
["EVM0025185",0.000870664,{"v":9.36e-05,"d":"9.36E-05"},-1.307666533,"down","[R]","General function prediction only ","--","--","[S]","Function unknown ","Guanine nucleotide-binding protein subunit beta GN=GB1 OS=Zea mays (Maize) PE=2 SV=1","R","General function prediction only","--"]
["EVM0019112",0.003305481,0.000451621,-1.575748334,"up,down","[R]","General function prediction only ","Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","[R]","General function prediction only ","Protein TOPLESS GN=F7H2.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","R","General function prediction only","--"]
["Salvia_newGene_53218",{"v":4.33e-15,"d":"4.33E-15"},{"v":2.16e-17,"d":"2.16E-17"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1A-6 GN=R1A-6 OS=Solanum demissum (Wild potato) PE=3 SV=2","T","Signal transduction mechanisms","PREDICTED: putative late blight resistance protein homolog R1B-16 [Sesamum indicum]"]
["EVM0027826",{"v":4.33e-15,"d":"4.33E-15"},{"v":3.83e-17,"d":"3.83E-17"},3.394700436,"up","--","--","--","--","--","--","--","S","Function unknown","--"]
["Salvia_newGene_54002",{"v":4.33e-15,"d":"4.33E-15"},{"v":2.16e-17,"d":"2.16E-17"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1A-6 GN=R1A-6 OS=Solanum demissum (Wild potato) PE=3 SV=2","T","Signal transduction mechanisms","PREDICTED: putative late blight resistance protein homolog R1B-16 [Sesamum indicum]"]
["EVM0012245",0.004969279,0.000866735,-2.685422322,"down","--","--","--","--","--","--","--","R","General function prediction only","--"]
["EVM0012086",0.001435248,0.000164806,1.255222109,"up","--","--","--","K16292|1.12321e-57|sot:102600751|vignain-like; K16292 KDEL-tailed cysteine endopeptidase [EC:3.4.22.-] (A)","[O]","Posttranslational modification, protein turnover, chaperones ","Vignain (Precursor) OS=Phaseolus vulgaris (Kidney bean) PE=2 SV=2","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0021760",0.00280583,0.000350729,1.891294437,"up","--","--","--","--","--","--","Squamosa promoter-binding-like protein 12 GN=SPL12 OS=Oryza sativa subsp. indica (Rice) PE=2 SV=1","K","Transcription","--"]
["EVM0001320",0.002108628,0.000251319,1.378487044,"up","[C]","Energy production and conversion ","Biological Process: glycerol metabolic process (GO:0006071);; Biological Process: lipid metabolic process (GO:0006629);; Molecular Function: glycerophosphodiester phosphodiesterase activity (GO:0008889);; ","--","[C]","Energy production and conversion ","Glycerophosphodiester phosphodiesterase GDPDL4 {ECO:0000305} (Precursor) GN=MTE17.19 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","C","Energy production and conversion","--"]
["EVM0025381",0.006340017,0.001206158,1.325876238,"up","--","--","Molecular Function: RNA binding (GO:0003723);; Cellular Component: cytosol (GO:0005829);; Biological Process: protein import into nucleus (GO:0006606);; ","K13210|7.02223e-125|sly:101267010|far upstream element-binding protein 2; K13210 far upstream element-binding protein (A)","[A]","RNA processing and modification ","Topless-related protein 3 GN=TPR3 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","A","RNA processing and modification","--"]
["EVM0021056",0.002108628,0.000251319,1.378487044,"up","[E]","Amino acid transport and metabolism ","Molecular Function: 3-dehydroquinate dehydratase activity (GO:0003855);; Molecular Function: shikimate 3-dehydrogenase (NADP+) activity (GO:0004764);; Biological Process: shikimate metabolic process (GO:0019632);; Molecular Function: NADP binding (GO:0050661);; Biological Process: oxidation-reduction process (GO:0055114);; ","K13832|0|sot:102605317|bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like; K13832 3-dehydroquinate dehydratase / shikimate dehydrogenase [EC:4.2.1.10 1.1.1.25] (A)","[E]","Amino acid transport and metabolism ","Shikimate dehydrogenase (Precursor) GN=EMB3004 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","E","Amino acid transport and metabolism","--"]
["EVM0012271",0.002108628,0.000251319,1.378487044,"up","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0005963",0.006008258,0.001082884,-3.873231793,"down","[L]","Replication, recombination and repair ","Molecular Function: double-stranded RNA binding (GO:0003725);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: intracellular (GO:0005622);; Molecular Function: ATP-dependent helicase activity (GO:0008026);; ","K14442|0|sot:102604132|probable ATP-dependent RNA helicase DHX36-like; K14442 ATP-dependent RNA helicase DHX36 [EC:3.6.4.13] (A)","[A]","RNA processing and modification ","Probable pre-mRNA-splicing factor ATP-dependent RNA helicase GN=At2g47250 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","A","RNA processing and modification","--"]
["EVM0019537",0.001435248,0.000164806,1.255222109,"up","--","--","--","--","[S]","Function unknown ","Piezo-type mechanosensitive ion channel homolog GN=T9J23.19/T9J23.20/T9J23.21 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","--"]
["EVM0000509",0.003617439,0.000546822,-1.266778259,"down","[RTKL]","--","Molecular Function: kinase activity (GO:0016301);; ","--","[T]","Signal transduction mechanisms ","Mitogen-activated protein kinase kinase kinase 2 GN=ANP2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","T","Signal transduction mechanisms","--"]
["EVM0022543",{"v":6.97e-07,"d":"6.97E-07"},{"v":3.45e-08,"d":"3.45E-08"},-3.330263518,"down","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0018092",0.001435248,0.000164806,1.255222109,"up","--","--","Cellular Component: vacuole (GO:0005773);; Cellular Component: endoplasmic reticulum lumen (GO:0005788);; Biological Process: proteolysis (GO:0006508);; Molecular Function: cysteine-type peptidase activity (GO:0008234);; Cellular Component: aleurone grain (GO:0033095);; ","K16292|0|sly:101250302|vignain-like; K16292 KDEL-tailed cysteine endopeptidase [EC:3.4.22.-] (A)","[O]","Posttranslational modification, protein turnover, chaperones ","Vignain-2 (Precursor) OS=Vigna mungo (Black gram) PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0000766",0.001255966,0.00013874,1.248541407,"up","[EF]","--","Molecular Function: carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity (GO:0004088);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: cytosol (GO:0005829);; Cellular Component: carbamoyl-phosphate synthase complex (GO:0005951);; Biological Process: gluconeogenesis (GO:0006094);; Biological Process: chromatin silencing (GO:0006342);; Biological Process: arginine biosynthetic process (GO:0006526);; Biological Process: cytoskeleton organization (GO:0007010);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: proteasomal protein catabolic process (GO:0010498);; Cellular Component: membrane (GO:0016020);; Biological Process: cellular response to phosphate starvation (GO:0016036);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: histone H3-K9 methylation (GO:0051567);; ","K01955|0|sot:102581397|carbamoyl-phosphate synthase large chain, chloroplastic-like; K01955 carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] (A)","[R]","General function prediction only ","Carbamoyl-phosphate synthase large chain, chloroplastic (Precursor) GN=F1N18.6 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","R","General function prediction only","--"]
["EVM0009583",0.006008258,0.001082884,-3.873231793,"down","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0006820",0.006340017,0.001206158,1.325876238,"up","[O]","Posttranslational modification, protein turnover, chaperones ","Molecular Function: binding (GO:0005488);; Molecular Function: nucleoside-triphosphatase activity (GO:0017111);; ","--","[O]","Posttranslational modification, protein turnover, chaperones ","Calmodulin-interacting protein 111 GN=CIP111 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","--"]
["Salvia_newGene_67281",0.000859097,{"v":8.99e-05,"d":"8.99E-05"},1.605568787,"up","[L]","Replication, recombination and repair ","Molecular Function: catalytic activity (GO:0003824);; Molecular Function: binding (GO:0005488);; Biological Process: macromolecule metabolic process (GO:0043170);; Biological Process: primary metabolic process (GO:0044238);; ","--","[R]","General function prediction only ","RNA-directed DNA polymerase homolog OS=Oenothera berteroana (Bertero&apos;s evening primrose) PE=4 SV=1","R","General function prediction only","Ty3/gypsy retrotransposon protein [Beta vulgaris subsp. vulgaris]"]
["EVM0000577",0.003617439,0.000544916,-1.575748334,"up,down","[KAD]","--","Molecular Function: binding (GO:0005488);; ","K09422|4.8163e-46|tcc:TCM_045715|Duplicated homeodomain-like superfamily protein, putative; K09422 myb proto-oncogene protein, plant (A)","[K]","Transcription ","Transcription factor MYB29 GN=MBK20.15 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","K","Transcription","--"]
["EVM0006113",0.006008258,0.001082884,-3.873231793,"down","[P]","Inorganic ion transport and metabolism ","Molecular Function: secondary active sulfate transmembrane transporter activity (GO:0008271);; Biological Process: sulfate transport (GO:0008272);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: transmembrane transport (GO:0055085);; ","K18059|0|sly:101257470|ST4.1; probable sulfate transporter 4.2-like; K18059 sulfate transporter 4 (A)","[P]","Inorganic ion transport and metabolism ","Probable sulfate transporter 4.2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","P","Inorganic ion transport and metabolism","--"]
["EVM0012891",0.000870664,{"v":9.36e-05,"d":"9.36E-05"},-1.307666533,"down","--","--","--","K13457|3.04587e-146|sot:102595981|putative disease resistance protein At1g50180-like (A)","[T]","Signal transduction mechanisms ","Disease resistance RPP8-like protein 3 GN=RPP8L3 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","T","Signal transduction mechanisms","--"]
["EVM0010811",0.002108628,0.000251319,1.378487044,"up","[V]","Defense mechanisms ","Biological Process: drug transmembrane transport (GO:0006855);; Molecular Function: drug transmembrane transporter activity (GO:0015238);; Molecular Function: antiporter activity (GO:0015297);; Cellular Component: membrane (GO:0016020);; ","K03327|0|cit:102628773|protein TRANSPARENT TESTA 12-like; K03327 multidrug resistance protein, MATE family (A)","[R]","General function prediction only ","Protein TRANSPARENT TESTA 12 GN=F17J16_80 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","--"]
["EVM0007011",0.000870664,{"v":9.36e-05,"d":"9.36E-05"},-1.307666533,"down","--","--","--","--","--","--","--","S","Function unknown","--"]
["Salvia_newGene_240",0.001255966,0.00013874,1.248541407,"up","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1B-17 GN=R1B-17 OS=Solanum demissum (Wild potato) PE=3 SV=1","T","Signal transduction mechanisms","hypothetical protein MIMGU_mgv1a001149mg [Erythranthe guttata]"]
["Salvia_newGene_67874",{"v":9.26e-06,"d":"9.26E-06"},{"v":5.92e-07,"d":"5.92E-07"},2.146060612,"up","--","--","Cellular Component: plastid (GO:0009536);; ","--","[R]","General function prediction only ","Endonuclease OS=Nicotiana tabacum (Common tobacco) PE=2 SV=1","R","General function prediction only","hypothetical protein VITISV_017741 [Vitis vinifera]"]
["EVM0003288",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1A-6 GN=R1A-6 OS=Solanum demissum (Wild potato) PE=3 SV=2","T","Signal transduction mechanisms","--"]
["EVM0001445",{"v":1.22e-07,"d":"1.22E-07"},{"v":3.56e-09,"d":"3.56E-09"},2.01139798,"up","--","--","--","--","--","--","--","R","General function prediction only","--"]
["EVM0004906",{"v":8e-07,"d":"8.00E-07"},{"v":4.19e-08,"d":"4.19E-08"},-2.320120972,"down","[R]","General function prediction only ","Cellular Component: peroxisomal membrane (GO:0005778);; Molecular Function: electron carrier activity (GO:0009055);; Cellular Component: chloroplast envelope (GO:0009941);; Molecular Function: monodehydroascorbate reductase (NADH) activity (GO:0016656);; Biological Process: glucosinolate biosynthetic process (GO:0019761);; Biological Process: hydrogen peroxide catabolic process (GO:0042744);; Biological Process: response to cadmium ion (GO:0046686);; Molecular Function: flavin adenine dinucleotide binding (GO:0050660);; Biological Process: oxidation-reduction process (GO:0055114);; ","K08232|0|sot:102595145|probable monodehydroascorbate reductase, cytoplasmic isoform 2-like; K08232 monodehydroascorbate reductase (NADH) [EC:1.6.5.4] (A)","[R]","General function prediction only ","Probable monodehydroascorbate reductase, cytoplasmic isoform 2 GN=At3g27820 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","--"]
["EVM0022733",{"v":8.08e-06,"d":"8.08E-06"},{"v":4.7e-07,"d":"4.70E-07"},1.894718978,"up","--","--","--","--","[R]","General function prediction only ","Pentatricopeptide repeat-containing protein At3g46790, chloroplastic (Precursor) GN=T6H20.180 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","--"]
["EVM0008505",0.006340017,0.001206158,1.325876238,"up","--","--","Biological Process: very long-chain fatty acid metabolic process (GO:0000038);; Cellular Component: endoplasmic reticulum (GO:0005783);; Biological Process: fatty acid biosynthetic process (GO:0006633);; Biological Process: response to cold (GO:0009409);; Biological Process: response to light stimulus (GO:0009416);; Biological Process: unidimensional cell growth (GO:0009826);; Molecular Function: fatty acid elongase activity (GO:0009922);; Biological Process: wax biosynthetic process (GO:0010025);; Cellular Component: membrane (GO:0016020);; Biological Process: cuticle development (GO:0042335);; Biological Process: pollen tube development (GO:0048868);; ","K15397|0|sly:101257332|3-ketoacyl-CoA synthase 6-like; K15397 3-ketoacyl-CoA synthase [EC:2.3.1.199] (A)","--","--","3-ketoacyl-CoA synthase 6 GN=T26J14.10 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","M","Cell wall/membrane/envelope biogenesis","--"]
["EVM0026137",0.006008258,0.001082884,1.325876238,"up,down","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Molecular Function: monooxygenase activity (GO:0004497);; Molecular Function: iron ion binding (GO:0005506);; Molecular Function: electron carrier activity (GO:0009055);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705);; Molecular Function: heme binding (GO:0020037);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","[QI]","--","Cytochrome P450 CYP72A219 OS=Panax ginseng (Korean ginseng) PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","--"]
["Salvia_newGene_90502",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1B-16 GN=R1B-16 OS=Solanum demissum (Wild potato) PE=3 SV=1","T","Signal transduction mechanisms","PREDICTED: putative late blight resistance protein homolog R1B-16 [Sesamum indicum]"]
["EVM0023936",{"v":5.48e-05,"d":"5.48E-05"},{"v":4.62e-06,"d":"4.62E-06"},-1.855173544,"down","--","--","--","--","--","--","Protein IQ-DOMAIN 1 GN=IQD1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","S","Function unknown","--"]
["EVM0010677",{"v":4.69e-08,"d":"4.69E-08"},{"v":1.23e-09,"d":"1.23E-09"},2.255629445,"up","[RTKL]","--","Molecular Function: transferase activity, transferring phosphorus-containing groups (GO:0016772);; ","--","[T]","Signal transduction mechanisms ","Mitogen-activated protein kinase kinase kinase NPK1 GN=NPK1 OS=Nicotiana tabacum (Common tobacco) PE=1 SV=1","T","Signal transduction mechanisms","--"]
["EVM0025318",0.004594858,0.000734643,1.289646579,"up","--","--","Molecular Function: calcium ion binding (GO:0005509);; Molecular Function: kinase activity (GO:0016301);; Biological Process: phosphorylation (GO:0016310);; ","K13448|1.0187e-97|vvi:100251852|probable calcium-binding protein CML48; K13448 calcium-binding protein CML (A)","[T]","Signal transduction mechanisms ","Probable calcium-binding protein CML48 GN=CML48 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","T","Signal transduction mechanisms","--"]
["EVM0004418",0.003617439,0.000544916,-1.575748334,"up,down","--","--","Biological Process: fatty acid biosynthetic process (GO:0006633);; Molecular Function: acyl-[acyl-carrier-protein] hydrolase activity (GO:0016297);; ","K10781|6.21847e-156|fve:101297137|palmitoyl-acyl carrier protein thioesterase, chloroplastic-like; K10781 fatty acyl-ACP thioesterase B [EC:3.1.2.14 3.1.2.21] (A)","--","--","Palmitoyl-acyl carrier protein thioesterase, chloroplastic (Precursor) GN=T27G7.19 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","I","Lipid transport and metabolism","--"]
["EVM0016701",0.000870664,{"v":9.36e-05,"d":"9.36E-05"},-1.307666533,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative disease resistance protein RGA4 GN=RGA4 OS=Solanum bulbocastanum (Wild potato) PE=2 SV=1","T","Signal transduction mechanisms","--"]
["EVM0006828",0.00280583,0.000350729,1.891294437,"up","--","--","Molecular Function: phosphoric ester hydrolase activity (GO:0042578);; ","--","[I]","Lipid transport and metabolism ","Probable phosphoinositide phosphatase SAC9 GN=F24G16.40 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","I","Lipid transport and metabolism","--"]
["EVM0021697",{"v":4.69e-08,"d":"4.69E-08"},{"v":1.23e-09,"d":"1.23E-09"},2.255629445,"up","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0020558",0.003617439,0.000544916,-1.575748334,"up,down","--","--","--","--","--","--","Interactor of constitutive active ROPs 4 GN=F3F9.6 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","S","Function unknown","--"]
["EVM0012366",{"v":1.22e-07,"d":"1.22E-07"},{"v":3.56e-09,"d":"3.56E-09"},2.01139798,"up","[V]","Defense mechanisms ","Molecular Function: ATP binding (GO:0005524);; Biological Process: ATP catabolic process (GO:0006200);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: ATPase activity, coupled to transmembrane movement of substances (GO:0042626);; Biological Process: transmembrane transport (GO:0055085);; ","--","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","ABC transporter C family member 3 GN=MJG19.3 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","--"]
["EVM0022675",{"v":8.08e-06,"d":"8.08E-06"},{"v":4.7e-07,"d":"4.70E-07"},1.894718978,"up,down","--","--","Biological Process: nuclear-transcribed mRNA catabolic process (GO:0000956);; Biological Process: response to high light intensity (GO:0009644);; Molecular Function: amino acid binding (GO:0016597);; Biological Process: response to hydrogen peroxide (GO:0042542);; ","--","--","--","ACT domain-containing protein ACR10 {ECO:0000305} OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","--"]
["EVM0005882",0.006008258,0.001082884,-3.873231793,"down","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0008663",{"v":4.33e-15,"d":"4.33E-15"},{"v":2.16e-17,"d":"2.16E-17"},-4.227019327,"down","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0015945",{"v":8.08e-06,"d":"8.08E-06"},{"v":4.7e-07,"d":"4.70E-07"},1.894718978,"up","--","--","Cellular Component: plasmodesma (GO:0009506);; Cellular Component: membrane (GO:0016020);; Molecular Function: transmembrane transporter activity (GO:0022857);; Biological Process: transmembrane transport (GO:0055085);; ","K14611|0|cam:101505560|nucleobase-ascorbate transporter 1-like; K14611 solute carrier family 23 (nucleobase transporter), member 1/2 (A)","[F]","Nucleotide transport and metabolism ","Nucleobase-ascorbate transporter 1 GN=NAT1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","P","Inorganic ion transport and metabolism","--"]
["EVM0011516",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1B-16 GN=R1B-16 OS=Solanum demissum (Wild potato) PE=3 SV=1","T","Signal transduction mechanisms","--"]
["EVM0020297",0.000131541,{"v":1.15e-05,"d":"1.15E-05"},1.780467443,"up","[IQ]","--","Molecular Function: ligase activity (GO:0016874);; Molecular Function: Photinus-luciferin 4-monooxygenase (ATP-hydrolyzing) activity (GO:0047077);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","[I]","Lipid transport and metabolism ","4-coumarate--CoA ligase-like 9 GN=4CLL9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","I","Lipid transport and metabolism","--"]
["EVM0004820",0.006008258,0.001082884,-3.873231793,"down","--","--","Molecular Function: iron ion binding (GO:0005506);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytosol (GO:0005829);; Molecular Function: acireductone dioxygenase [iron(II)-requiring] activity (GO:0010309);; Biological Process: L-methionine biosynthetic process from methylthioadenosine (GO:0019509);; Biological Process: oxidation-reduction process (GO:0055114);; ","K08967|3.47885e-121|sot:102577691|ARD; acireductone dioxygenase; K08967 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase [EC:1.13.11.53 1.13.11.54] (A)","[S]","Function unknown ","1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 3 {ECO:0000255|HAMAP-Rule:MF_03154} GN=ARD3 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","E","Amino acid transport and metabolism","--"]
["EVM0002248",{"v":8.08e-06,"d":"8.08E-06"},{"v":4.7e-07,"d":"4.70E-07"},1.894718978,"up","--","--","--","--","[R]","General function prediction only ","Putative pentatricopeptide repeat-containing protein At3g01580 GN=PCMP-E87 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=2","R","General function prediction only","--"]
["EVM0024836",{"v":4.69e-08,"d":"4.69E-08"},{"v":1.23e-09,"d":"1.23E-09"},2.255629445,"up","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Molecular Function: copper ion binding (GO:0005507);; Biological Process: plant-type secondary cell wall biogenesis (GO:0009834);; Biological Process: lignin catabolic process (GO:0046274);; Cellular Component: apoplast (GO:0048046);; Molecular Function: hydroquinone:oxygen oxidoreductase activity (GO:0052716);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Laccase-4 (Precursor) GN=F16M14.1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","Q","Secondary metabolites biosynthesis, transport and catabolism","--"]
["EVM0010672",0.001255966,0.00013874,1.248541407,"up","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1A-6 GN=R1A-6 OS=Solanum demissum (Wild potato) PE=3 SV=2","T","Signal transduction mechanisms","--"]
["EVM0027056",0.006008258,0.001082884,-3.873231793,"down","--","--","Molecular Function: zinc ion binding (GO:0008270);; ","K16280|0|sot:102585646|E3 ubiquitin-protein ligase RGLG2-like; K16280 E3 ubiquitin-protein ligase RGLG [EC:6.3.2.19] (A)","[T]","Signal transduction mechanisms ","E3 ubiquitin-protein ligase RGLG2 GN=RGLG2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0015083",0.006008258,0.001082884,-3.873231793,"down","--","--","--","K14317|0|sot:102587240|uncharacterized LOC102587240; K14317 nuclear pore complex protein Nup214 (A)","--","--","Nuclear pore complex protein NUP214 {ECO:0000303|PubMed:21189294} OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","S","Function unknown","--"]
["EVM0026988",0.003617439,0.000544916,-1.575748334,"up,down","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0022780",0.001435248,0.000164806,1.255222109,"up","[M]","Cell wall/membrane/envelope biogenesis ","Cellular Component: membrane (GO:0016020);; Molecular Function: phosphotransferase activity, for other substituted phosphate groups (GO:0016780);; Cellular Component: ribonucleoprotein complex (GO:0030529);; Biological Process: cellular macromolecule biosynthetic process (GO:0034645);; Biological Process: cellular protein metabolic process (GO:0044267);; ","K01000|1.16291e-176|sly:101245613|","--","--","Phospho-N-acetylmuramoyl-pentapeptide-transferase homolog OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=3","G","Carbohydrate transport and metabolism","--"]
["EVM0004130",0.002108628,0.000251319,1.378487044,"up","--","--","--","--","--","--","Protein ROOT PRIMORDIUM DEFECTIVE 1 GN=RPD1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","S","Function unknown","--"]
["EVM0012422",{"v":4.33e-15,"d":"4.33E-15"},{"v":2.16e-17,"d":"2.16E-17"},-4.227019327,"down","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Molecular Function: iron ion binding (GO:0005506);; Cellular Component: endoplasmic reticulum membrane (GO:0005789);; Molecular Function: electron carrier activity (GO:0009055);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: (S)-limonene 3-monooxygenase activity (GO:0018674);; Molecular Function: heme binding (GO:0020037);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Cytochrome P450 71D95 GN=CYP71D95 OS=Mentha gracilis (Gingermint) PE=1 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","--"]
["EVM0002173",0.000834612,{"v":8.25e-05,"d":"8.25E-05"},-1.278991609,"down","--","--","--","K15164|0|sot:102578156|mediator of RNA polymerase II transcription subunit 13-like; K15164 mediator of RNA polymerase II transcription subunit 13 (A)","[I]","Lipid transport and metabolism ","Mediator of RNA polymerase II transcription subunit 13 GN=F7A10.14 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","I","Lipid transport and metabolism","--"]
["EVM0013148",0.006008258,0.001082884,-3.873231793,"down","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0020103",{"v":4.33e-15,"d":"4.33E-15"},{"v":3.83e-17,"d":"3.83E-17"},3.394700436,"up","--","--","--","--","[R]","General function prediction only ","F-box protein SKIP19 GN=C6L9.140 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","R","General function prediction only","--"]
["EVM0012902",0.003617439,0.000544916,-1.575748334,"up,down","--","--","--","--","[E]","Amino acid transport and metabolism ","Protein NRT1/ PTR FAMILY 5.11 GN=NPF5.11 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","E","Amino acid transport and metabolism","--"]
["EVM0000228",0.006340017,0.001203061,1.325876238,"up","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0027238",0.006340017,0.001206158,1.325876238,"up","--","--","--","--","--","--","Mediator-associated protein 1 GN=At4g25210 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","S","Function unknown","--"]
["EVM0001409",0.006008258,0.001082884,-3.873231793,"down","--","--","--","K03023|0|sly:101264729|DNA-directed RNA polymerase III subunit RPC3; K03023 DNA-directed RNA polymerase III subunit RPC3 (A)","[K]","Transcription ","--","K","Transcription","--"]
["EVM0013898",0.003617439,0.000544916,-1.575748334,"up,down","--","--","Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: auxin-activated signaling pathway (GO:0009734);; Molecular Function: protein dimerization activity (GO:0046983);; ","--","--","--","Auxin response factor 8 GN=K15O15.5 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","K","Transcription","--"]
["EVM0014785",0.000870664,{"v":9.36e-05,"d":"9.36E-05"},-1.307666533,"down","[R]","General function prediction only ","Biological Process: macromolecule metabolic process (GO:0043170);; Biological Process: primary metabolic process (GO:0044238);; ","K11793|0|sot:102599009|protein cereblon-like; K11793 cereblon (A)","[R]","General function prediction only ","--","R","General function prediction only","--"]
["Salvia_newGene_59406",0.000870664,{"v":9.36e-05,"d":"9.36E-05"},-1.307666533,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative disease resistance protein RGA4 GN=RGA4 OS=Solanum bulbocastanum (Wild potato) PE=2 SV=1","T","Signal transduction mechanisms","PREDICTED: putative disease resistance protein RGA3 [Sesamum indicum]"]
["EVM0002938",0.006008258,0.001082884,-3.873231793,"down","--","--","--","--","[U]","Intracellular trafficking, secretion, and vesicular transport ","Protein ROOT INITIATION DEFECTIVE 3 GN=RID3 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","--"]
["EVM0008193",{"v":4.33e-15,"d":"4.33E-15"},{"v":2.16e-17,"d":"2.16E-17"},-4.227019327,"down","--","--","Cellular Component: nucleus (GO:0005634);; Cellular Component: endoplasmic reticulum (GO:0005783);; Biological Process: hyperosmotic salinity response (GO:0042538);; Biological Process: positive regulation of transcription, DNA-templated (GO:0045893);; ","--","--","--","TGACG-sequence-specific DNA-binding protein TGA-1B (Fragment) GN=TGA1B OS=Nicotiana tabacum (Common tobacco) PE=2 SV=1","S","Function unknown","--"]
["EVM0023452",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1A-6 GN=R1A-6 OS=Solanum demissum (Wild potato) PE=3 SV=2","T","Signal transduction mechanisms","--"]
["EVM0026739",0.006340017,0.001206158,1.325876238,"up","[O]","Posttranslational modification, protein turnover, chaperones ","--","--","--","--","Chaperone protein dnaJ 49 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0021635",0.0048876,0.00083828,1.08721942,"up","--","--","Molecular Function: transporter activity (GO:0005215);; Biological Process: transport (GO:0006810);; Cellular Component: integral component of membrane (GO:0016021);; ","--","[G]","Carbohydrate transport and metabolism ","Probable aquaporin PIP2-6 GN=OSJNBb0093G06.10 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2","G","Carbohydrate transport and metabolism","--"]
["Salvia_newGene_72575",0.001255966,0.00013874,1.248541407,"up","[S]","Function unknown ","--","K13457|4.71551e-71|pop:POPTR_0003s14960g|POPTRDRAFT_554585; disease resistance family protein; K13457 disease resistance protein RPM1 (A)","[T]","Signal transduction mechanisms ","Disease resistance RPP8-like protein 3 GN=RPP8L3 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","T","Signal transduction mechanisms","hypothetical protein MIMGU_mgv1a023055mg [Erythranthe guttata]"]
["EVM0010935",0.006340017,0.001203061,1.325876238,"up","[P]","Inorganic ion transport and metabolism ","Molecular Function: ATP binding (GO:0005524);; Biological Process: ATP biosynthetic process (GO:0006754);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: copper ion transmembrane transport (GO:0035434);; Molecular Function: copper-transporting ATPase activity (GO:0043682);; Molecular Function: metal ion binding (GO:0046872);; ","K01533|0|sot:102597236|copper-transporting ATPase PAA2, chloroplastic-like; K01533 Cu2+-exporting ATPase [EC:3.6.3.4] (A)","[P]","Inorganic ion transport and metabolism ","Copper-transporting ATPase PAA2, chloroplastic (Precursor) OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","P","Inorganic ion transport and metabolism","--"]
["Salvia_newGene_88478",0.001255966,0.00013874,1.248541407,"up","--","--","--","--","[R]","General function prediction only ","--","R","General function prediction only","hypothetical protein PHAVU_001G160900g, partial [Phaseolus vulgaris] "]
["EVM0000954",0.006008258,0.001082884,-3.873231793,"down","--","--","Molecular Function: structural constituent of ribosome (GO:0003735);; Cellular Component: ribosome (GO:0005840);; Biological Process: translation (GO:0006412);; Biological Process: positive regulation of transcription elongation from RNA polymerase II promoter (GO:0032968);; ","K15172|0|sot:102598650|putative transcription elongation factor SPT5 homolog 1-like; K15172 transcription elongation factor SPT5 (A)","[K]","Transcription ","Putative transcription elongation factor SPT5 homolog 1 GN=At4g08350 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","K","Transcription","--"]
["EVM0005825",0.000870664,{"v":9.36e-05,"d":"9.36E-05"},-1.307666533,"down","--","--","--","--","[R]","General function prediction only ","Pentatricopeptide repeat-containing protein At1g80150, mitochondrial (Precursor) GN=At1g80150 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","R","General function prediction only","--"]
["EVM0009212",0.006008258,0.001082884,-3.873231793,"down","[L]","Replication, recombination and repair ","Molecular Function: helicase activity (GO:0004386);; Biological Process: DNA metabolic process (GO:0006259);; Biological Process: single-organism cellular process (GO:0044763);; ","--","[D]","Cell cycle control, cell division, chromosome partitioning ","--","D","Cell cycle control, cell division, chromosome partitioning","--"]
["Salvia_newGene_38859",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Late blight resistance protein R1-A GN=R1A OS=Solanum demissum (Wild potato) PE=3 SV=1","T","Signal transduction mechanisms","hypothetical protein MIMGU_mgv1a023991mg [Erythranthe guttata]"]
["EVM0011128",{"v":4.69e-08,"d":"4.69E-08"},{"v":1.23e-09,"d":"1.23E-09"},2.255629445,"up","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Molecular Function: copper ion binding (GO:0005507);; Biological Process: lignin catabolic process (GO:0046274);; Cellular Component: apoplast (GO:0048046);; Molecular Function: hydroquinone:oxygen oxidoreductase activity (GO:0052716);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Laccase-11 (Precursor) OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","--"]
["EVM0003488",{"v":4.33e-15,"d":"4.33E-15"},{"v":3.83e-17,"d":"3.83E-17"},3.394700436,"up","[L]","Replication, recombination and repair ","--","--","[R]","General function prediction only ","--","R","General function prediction only","--"]
["Salvia_newGene_79405",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1A-4 GN=R1A-4 OS=Solanum demissum (Wild potato) PE=5 SV=2","T","Signal transduction mechanisms","hypothetical protein MIMGU_mgv1a023991mg [Erythranthe guttata]"]
["EVM0014986",0.003617439,0.000544916,-1.575748334,"up,down","--","--","Biological Process: fatty acid biosynthetic process (GO:0006633);; Cellular Component: chloroplast (GO:0009507);; Molecular Function: acyl-[acyl-carrier-protein] desaturase activity (GO:0045300);; Molecular Function: transition metal ion binding (GO:0046914);; Biological Process: oxidation-reduction process (GO:0055114);; ","K03921|0|cit:102619477|acyl-[acyl-carrier-protein] desaturase, chloroplastic-like; K03921 acyl-[acyl-carrier-protein] desaturase [EC:1.14.19.2] (A)","--","--","Acyl-[acyl-carrier-protein] desaturase, chloroplastic (Precursor) OS=Ricinus communis (Castor bean) PE=1 SV=1","I","Lipid transport and metabolism","--"]
["EVM0002126",0.006008258,0.001082884,-3.873231793,"down","[L]","Replication, recombination and repair ","Molecular Function: methyltransferase activity (GO:0008168);; Biological Process: DNA methylation on cytosine (GO:0032776);; Biological Process: single-organism cellular process (GO:0044763);; Biological Process: negative regulation of gene expression, epigenetic (GO:0045814);; ","K00558|0|sly:101267211|DNA (cytosine-5)-methyltransferase CMT3; K00558 DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] (A)","--","--","DNA (cytosine-5)-methyltransferase 1 GN=MET2A OS=Zea mays (Maize) PE=1 SV=1","B","Chromatin structure and dynamics","--"]
["EVM0004163",0.006340017,0.001206158,1.325876238,"up","[O]","Posttranslational modification, protein turnover, chaperones ","Molecular Function: nucleotide binding (GO:0000166);; ","K03283|0|gmx:100816111|HSP70; heat shock cognate 70 kDa protein-like; K03283 heat shock 70kDa protein 1/8 (A)","[O]","Posttranslational modification, protein turnover, chaperones ","Heat shock cognate 70 kDa protein GN=HSP70 OS=Petunia hybrida (Petunia) PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0010394",{"v":1.29e-07,"d":"1.29E-07"},{"v":4.11e-09,"d":"4.11E-09"},1.988011567,"up","--","--","--","--","--","--","BTB/POZ domain-containing protein At3g22104 GN=At3g22104 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","--"]
["EVM0013613",{"v":4.33e-15,"d":"4.33E-15"},{"v":3.83e-17,"d":"3.83E-17"},3.394700436,"up","--","--","--","--","[R]","General function prediction only ","Histone-lysine N-methyltransferase ATX1 GN=T9H9.17 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","R","General function prediction only","--"]
["EVM0023258",0.00280583,0.000350729,1.891294437,"up","--","--","--","--","--","--","Squamosa promoter-binding-like protein 17 GN=OsJ_028679 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2","K","Transcription","--"]
["EVM0013449",{"v":9.26e-06,"d":"9.26E-06"},{"v":5.92e-07,"d":"5.92E-07"},2.146060612,"up","[TK]","--","--","K14491|6.827e-167|vvi:100246057|RRB5; two-component response regulator ARR11; K14491 two-component response regulator ARR-B family (A)","[K]","Transcription ","Two-component response regulator ARR11 GN=F12A21.15 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","K","Transcription","--"]
["EVM0012651",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1A-6 GN=R1A-6 OS=Solanum demissum (Wild potato) PE=3 SV=2","T","Signal transduction mechanisms","--"]
["EVM0004533",{"v":9.26e-06,"d":"9.26E-06"},{"v":5.92e-07,"d":"5.92E-07"},2.146060612,"up","[E]","Amino acid transport and metabolism ","Molecular Function: serine-type carboxypeptidase activity (GO:0004185);; Biological Process: proteolysis (GO:0006508);; ","K16297|0|fve:101295740|serine carboxypeptidase-like 29-like isoform 1; K16297 serine carboxypeptidase-like clade II [EC:3.4.16.-] (A)","[OE]","--","Serine carboxypeptidase II-2 chain B (Precursor; Fragment) GN=CXP;2-2 OS=Hordeum vulgare (Barley) PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0015911",0.006008258,0.001082884,-3.873231793,"down","--","--","Cellular Component: intracellular part (GO:0044424);; ","K13199|3.97394e-70|vvi:100259885|plasminogen activator inhibitor 1 RNA-binding protein; K13199 plasminogen activator inhibitor 1 RNA-binding protein (A)","[R]","General function prediction only ","--","R","General function prediction only","--"]
["EVM0007441",0.001435248,0.000164806,1.255222109,"up","--","--","Biological Process: carbohydrate metabolic process (GO:0005975);; Molecular Function: glucan endo-1,3-beta-D-glucosidase activity (GO:0042973);; ","--","--","--","Glucan endo-1,3-beta-glucosidase 7 (Precursor) GN=At4g34480 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","R","General function prediction only","--"]
["EVM0015157",0.003617439,0.000544916,-1.575748334,"up,down","--","--","Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: auxin-activated signaling pathway (GO:0009734);; Molecular Function: protein dimerization activity (GO:0046983);; ","--","--","--","Auxin response factor 6 GN=ARF6 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","K","Transcription","--"]
["EVM0006373",{"v":4.33e-15,"d":"4.33E-15"},{"v":3.83e-17,"d":"3.83E-17"},3.394700436,"up","[H]","Coenzyme transport and metabolism ","Molecular Function: ATP binding (GO:0005524);; Cellular Component: chloroplast (GO:0009507);; Biological Process: photosynthesis (GO:0015979);; Biological Process: chlorophyll biosynthetic process (GO:0015995);; Molecular Function: magnesium chelatase activity (GO:0016851);; Molecular Function: nucleoside-triphosphatase activity (GO:0017111);; ","K03404|0|cit:102628202|magnesium-chelatase subunit ChlD, chloroplastic-like; K03404 magnesium chelatase subunit D [EC:6.6.1.1] (A)","--","--","Magnesium-chelatase subunit ChlD, chloroplastic (Precursor) GN=CHLD OS=Nicotiana tabacum (Common tobacco) PE=2 SV=1","H","Coenzyme transport and metabolism","--"]
["EVM0012210",0.001255966,0.00013874,1.248541407,"up","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1A-6 GN=R1A-6 OS=Solanum demissum (Wild potato) PE=3 SV=2","T","Signal transduction mechanisms","--"]
["EVM0017359",0.00280583,0.000350729,1.891294437,"up","[GEPR]","--","Molecular Function: sugar:proton symporter activity (GO:0005351);; Biological Process: protein targeting to membrane (GO:0006612);; Biological Process: amino acid transport (GO:0006865);; Biological Process: ethylene biosynthetic process (GO:0009693);; Biological Process: plant-type cell wall modification (GO:0009827);; Biological Process: pollen tube growth (GO:0009860);; Biological Process: salicylic acid mediated signaling pathway (GO:0009863);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Biological Process: nitrate transport (GO:0015706);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: endoplasmic reticulum unfolded protein response (GO:0030968);; Biological Process: carbohydrate transmembrane transport (GO:0034219);; Molecular Function: nicotinate transporter activity (GO:0090416);; Molecular Function: N-methylnicotinate transporter activity (GO:0090417);; Biological Process: nicotinate transport (GO:2001142);; Biological Process: N-methylnicotinate transport (GO:2001143);; ","--","[R]","General function prediction only ","Organic cation/carnitine transporter 7 GN=MGH6.16 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","--"]
["EVM0003857",0.000870664,{"v":9.36e-05,"d":"9.36E-05"},-1.307666533,"down","--","--","--","--","[L]","Replication, recombination and repair ","--","L","Replication, recombination and repair","--"]
["EVM0006701",0.006340017,0.001206158,1.325876238,"up","--","--","--","--","--","--","Protein DYAD GN=MFG13.3 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","S","Function unknown","--"]
["EVM0009755",0.006340017,0.001203061,1.325876238,"up","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Molecular Function: monooxygenase activity (GO:0004497);; Molecular Function: iron ion binding (GO:0005506);; Molecular Function: electron carrier activity (GO:0009055);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705);; Molecular Function: heme binding (GO:0020037);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","[QI]","--","Cytochrome P450 CYP72A219 OS=Panax ginseng (Korean ginseng) PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","--"]
["Salvia_newGene_54561",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1A-6 GN=R1A-6 OS=Solanum demissum (Wild potato) PE=3 SV=2","T","Signal transduction mechanisms","PREDICTED: putative late blight resistance protein homolog R1B-16 [Sesamum indicum]"]
["EVM0014989",0.00084516,{"v":8.6e-05,"d":"8.60E-05"},-1.53399087,"down","--","--","--","K15032|7.34168e-84|cit:102611177|uncharacterized LOC102611177; K15032 mTERF domain-containing protein, mitochondrial (A)","[KR]","--","--","K","Transcription","--"]
["EVM0010985",0.004594858,0.000734643,1.289646579,"up","[RTKL]","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Molecular Function: oxidoreductase activity (GO:0016491);; ","--","--","--","Probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840 (Precursor) GN=LRR-RLK OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","T","Signal transduction mechanisms","--"]
["EVM0016872",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1B-14 GN=R1B-14 OS=Solanum demissum (Wild potato) PE=3 SV=1","T","Signal transduction mechanisms","--"]
["EVM0000709",0.006340017,0.001203061,1.325876238,"up","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Molecular Function: oxidoreductase activity (GO:0016491);; Molecular Function: metal ion binding (GO:0046872);; ","--","[QI]","--","Cytochrome P450 CYP749A22 OS=Panax ginseng (Korean ginseng) PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","--"]
["EVM0007368",0.001255966,0.00013874,1.248541407,"up","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1A-6 GN=R1A-6 OS=Solanum demissum (Wild potato) PE=3 SV=2","T","Signal transduction mechanisms","--"]
["Salvia_newGene_53195",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1C-3 GN=R1C-3 OS=Solanum demissum (Wild potato) PE=3 SV=1","T","Signal transduction mechanisms","PREDICTED: putative late blight resistance protein homolog R1B-16 [Sesamum indicum]"]
["Salvia_newGene_55450",{"v":9.26e-06,"d":"9.26E-06"},{"v":5.92e-07,"d":"5.92E-07"},2.146060612,"up","--","--","--","--","--","--","--","L","Replication, recombination and repair","PREDICTED: uncharacterized protein LOC102668437 [Glycine max]"]
["EVM0017176",0.000870664,{"v":9.36e-05,"d":"9.36E-05"},-1.307666533,"down","[O]","Posttranslational modification, protein turnover, chaperones ","--","--","--","--","Subtilisin-like protease SBT5.3 (Precursor) OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0007968",0.00084516,{"v":8.6e-05,"d":"8.60E-05"},-1.53399087,"down","--","--","--","--","--","--","F-box/kelch-repeat protein At3g23880 GN=At3g23880 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","--"]
["EVM0002498",{"v":8.08e-06,"d":"8.08E-06"},{"v":4.7e-07,"d":"4.70E-07"},1.894718978,"up","--","--","--","--","[R]","General function prediction only ","Pentatricopeptide repeat-containing protein At3g46790, chloroplastic (Precursor) GN=T6H20.180 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","--"]
["EVM0015218",0.004969279,0.000866735,-2.685422322,"down","--","--","Biological Process: primary metabolic process (GO:0044238);; Biological Process: cellular macromolecule metabolic process (GO:0044260);; Molecular Function: metal ion binding (GO:0046872);; ","K04498|0|cit:102625213|histone acetyltransferase HAC1-like; K04498 E1A/CREB-binding protein [EC:2.3.1.48] (A)","[K]","Transcription ","Histone acetyltransferase HAC1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","K","Transcription","--"]
["EVM0022741",{"v":1.77e-07,"d":"1.77E-07"},{"v":6.8e-09,"d":"6.80E-09"},1.982657973,"up","--","--","--","--","--","--","NAC domain-containing protein 100 GN=NAC100 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","--"]
["EVM0015359",{"v":4.33e-15,"d":"4.33E-15"},{"v":2.16e-17,"d":"2.16E-17"},-4.227019327,"down","--","--","--","--","[R]","General function prediction only ","Receptor-like protein 12 (Precursor) GN=RLP12 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","R","General function prediction only","--"]
["Salvia_newGene_44311",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1B-16 GN=R1B-16 OS=Solanum demissum (Wild potato) PE=3 SV=1","T","Signal transduction mechanisms","hypothetical protein MIMGU_mgv1a018989mg [Erythranthe guttata]"]
["EVM0015518",{"v":4.33e-15,"d":"4.33E-15"},{"v":2.16e-17,"d":"2.16E-17"},-4.227019327,"down","--","--","Biological Process: metabolic process (GO:0008152);; Molecular Function: nucleotidyltransferase activity (GO:0016779);; ","K00972|0|mdm:103409011|UDP-N-acetylglucosamine diphosphorylase 1; K00972 UDP-N-acetylglucosamine/UDP-N-acetylgalactosamine diphosphorylase [EC:2.7.7.23 2.7.7.83] (A)","[M]","Cell wall/membrane/envelope biogenesis ","UDP-N-acetylglucosamine diphosphorylase 1 GN=GLCNAC1PUT1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","G","Carbohydrate transport and metabolism","--"]
["Salvia_newGene_80711",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Late blight resistance protein R1-A GN=R1A OS=Solanum demissum (Wild potato) PE=3 SV=1","T","Signal transduction mechanisms","PREDICTED: putative late blight resistance protein homolog R1B-16 [Sesamum indicum]"]
["EVM0008568",0.003617439,0.000544916,-1.575748334,"up,down","--","--","--","--","--","--","B2 protein OS=Daucus carota (Wild carrot) PE=2 SV=1","S","Function unknown","--"]
["EVM0005900",0.000870664,{"v":9.36e-05,"d":"9.36E-05"},-1.307666533,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Probable disease resistance RPP8-like protein 2 GN=RPP8L2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1","T","Signal transduction mechanisms","--"]
["Salvia_newGene_87324",0.004594858,0.000734643,1.289646579,"up","--","--","--","--","--","--","--","--","--","PREDICTED: replication protein A 70 kDa DNA-binding subunit C-like, partial [Nicotiana sylvestris]"]
["EVM0004809",{"v":1.22e-07,"d":"1.22E-07"},{"v":3.56e-09,"d":"3.56E-09"},2.01139798,"up","--","--","Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","Nodulation-signaling pathway 2 protein GN=NSP2 OS=Medicago truncatula (Barrel medic) PE=1 SV=1","K","Transcription","--"]
["EVM0007164",0.000859097,{"v":8.99e-05,"d":"8.99E-05"},1.605568787,"up","[RTKL]","--","Biological Process: MAPK cascade (GO:0000165);; Molecular Function: nucleotide binding (GO:0000166);; Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: membrane (GO:0016020);; Molecular Function: oxidoreductase activity (GO:0016491);; ","--","--","--","LRR receptor-like serine/threonine-protein kinase HSL2 (Precursor) GN=HSL2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","T","Signal transduction mechanisms","--"]
["EVM0013106",0.002108628,0.000251319,1.378487044,"up","--","--","Biological Process: oligopeptide transport (GO:0006857);; Molecular Function: oligopeptide transporter activity (GO:0015198);; Cellular Component: membrane (GO:0016020);; Biological Process: transmembrane transport (GO:0055085);; Biological Process: response to karrikin (GO:0080167);; ","--","[T]","Signal transduction mechanisms ","Oligopeptide transporter 4 GN=OPT4 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","P","Inorganic ion transport and metabolism","--"]
["EVM0002604",0.006008258,0.001082884,-3.873231793,"down","[L]","Replication, recombination and repair ","Molecular Function: helicase activity (GO:0004386);; Biological Process: DNA metabolic process (GO:0006259);; Biological Process: single-organism cellular process (GO:0044763);; ","--","[D]","Cell cycle control, cell division, chromosome partitioning ","--","S","Function unknown","--"]
["EVM0003517",{"v":8e-07,"d":"8.00E-07"},{"v":4.19e-08,"d":"4.19E-08"},-2.320120972,"down","[S]","Function unknown ","Cellular Component: mitochondrion (GO:0005739);; ","--","[S]","Function unknown ","--","S","Function unknown","--"]
["EVM0026113",{"v":1.22e-05,"d":"1.22E-05"},{"v":8.49e-07,"d":"8.49E-07"},1.873541896,"up","--","--","--","--","[R]","General function prediction only ","Pentatricopeptide repeat-containing protein At5g38730 GN=At5g38730 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","--"]
["EVM0015034",0.001255966,0.00013874,1.248541407,"up","--","--","Molecular Function: peptidase activity (GO:0008233);; ","--","--","--","Subtilisin-like protease (Precursor) GN=At5g67360 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0008953",0.001435248,0.000164806,1.255222109,"up","[C]","Energy production and conversion ","Biological Process: response to superoxide (GO:0000303);; Molecular Function: aconitate hydratase activity (GO:0003994);; Molecular Function: copper ion binding (GO:0005507);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: cell wall (GO:0005618);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: vacuolar membrane (GO:0005774);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: cytosol (GO:0005829);; Biological Process: gluconeogenesis (GO:0006094);; Biological Process: glycolytic process (GO:0006096);; Biological Process: citrate metabolic process (GO:0006101);; Biological Process: isocitrate metabolic process (GO:0006102);; Biological Process: protein N-linked glycosylation (GO:0006487);; Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511);; Biological Process: water transport (GO:0006833);; Biological Process: hyperosmotic response (GO:0006972);; Biological Process: Golgi organization (GO:0007030);; Biological Process: response to temperature stimulus (GO:0009266);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: response to salt stress (GO:0009651);; Biological Process: response to auxin (GO:0009733);; Biological Process: response to abscisic acid (GO:0009737);; Biological Process: response to carbohydrate (GO:0009743);; Biological Process: photorespiration (GO:0009853);; Biological Process: ethylene-activated signaling pathway (GO:0009873);; Biological Process: response to iron ion (GO:0010039);; Biological Process: photosynthesis (GO:0015979);; Biological Process: response to cadmium ion (GO:0046686);; Molecular Function: 4 iron, 4 sulfur cluster binding (GO:0051539);; Biological Process: response to misfolded protein (GO:0051788);; Biological Process: iron ion homeostasis (GO:0055072);; Biological Process: proteasome core complex assembly (GO:0080129);; ","K01681|0|cmo:103495599|aconitate hydratase, cytoplasmic; K01681 aconitate hydratase [EC:4.2.1.3] (A)","[AJ]","--","Aconitate hydratase 2, mitochondrial (Precursor) GN=ACO2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","C","Energy production and conversion","--"]
["EVM0017921",{"v":4.69e-08,"d":"4.69E-08"},{"v":1.23e-09,"d":"1.23E-09"},2.255629445,"up","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Molecular Function: oxidoreductase activity (GO:0016491);; Biological Process: single-organism metabolic process (GO:0044710);; Molecular Function: metal ion binding (GO:0046872);; ","--","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Laccase-7 (Precursor) GN=LAC7 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","--"]
["Salvia_newGene_48259",0.001435248,0.000164806,1.255222109,"up","--","--","--","--","--","--","Protein NLP3 OS=Oryza sativa subsp. japonica (Rice) PE=3 SV=1","K","Transcription","hypothetical protein MIMGU_mgv1a007144mg [Erythranthe guttata]"]
["EVM0027371",0.002108628,0.000251319,1.378487044,"up","--","--","Cellular Component: endoplasmic reticulum (GO:0005783);; Biological Process: protein folding (GO:0006457);; Biological Process: ER-nucleus signaling pathway (GO:0006984);; Biological Process: response to heat (GO:0009408);; Biological Process: pollen development (GO:0009555);; Biological Process: response to high light intensity (GO:0009644);; Biological Process: response to endoplasmic reticulum stress (GO:0034976);; Biological Process: response to hydrogen peroxide (GO:0042542);; ","--","--","--","--","R","General function prediction only","--"]
["Salvia_newGene_90767",0.001435248,0.000164806,1.255222109,"up","--","--","--","--","--","--","FBD-associated F-box protein At5g22730 GN=At5g22730 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","R","General function prediction only","PREDICTED: F-box protein At4g09920 [Nelumbo nucifera]"]
["EVM0025308",0.003617439,0.000544916,-1.575748334,"up,down","--","--","Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: auxin-activated signaling pathway (GO:0009734);; Molecular Function: protein dimerization activity (GO:0046983);; ","--","--","--","Auxin response factor 6 GN=ARF6 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","K","Transcription","--"]
["EVM0004397",0.000870664,{"v":9.36e-05,"d":"9.36E-05"},-1.307666533,"down","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0008020",0.0048876,0.00083828,1.08721942,"up","--","--","Molecular Function: nucleic acid binding (GO:0003676);; ","K17583|0|tcc:TCM_025866|MIF4G domain and MA3 domain-containing protein isoform 1; K17583 nucleolar MIF4G domain-containing protein 1 (A)","[T]","Signal transduction mechanisms ","--","T","Signal transduction mechanisms","--"]
["EVM0018227",{"v":4.33e-15,"d":"4.33E-15"},{"v":2.16e-17,"d":"2.16E-17"},-4.227019327,"down","--","--","--","--","--","--","--","T","Signal transduction mechanisms","--"]
["EVM0003970",{"v":1.22e-07,"d":"1.22E-07"},{"v":3.56e-09,"d":"3.56E-09"},2.01139798,"up","[R]","General function prediction only ","Molecular Function: nucleotide binding (GO:0000166);; Molecular Function: poly(U) RNA binding (GO:0008266);; Biological Process: response to cold (GO:0009409);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: salicylic acid biosynthetic process (GO:0009697);; Biological Process: response to abscisic acid (GO:0009737);; Biological Process: defense response, incompatible interaction (GO:0009814);; Cellular Component: chloroplast envelope (GO:0009941);; Cellular Component: stromule (GO:0010319);; Biological Process: photosynthesis, light reaction (GO:0019684);; Biological Process: defense response to bacterium (GO:0042742);; ","K11294|1.1533e-106|vvi:100246501|29 kDa ribonucleoprotein A, chloroplastic; K11294 nucleolin (A)","[R]","General function prediction only ","RNA-binding protein CP29B, chloroplastic {ECO:0000305} (Precursor) GN=F3G5.1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","A","RNA processing and modification","--"]
["EVM0019407",0.001255966,0.00013874,1.248541407,"up","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1B-17 GN=R1B-17 OS=Solanum demissum (Wild potato) PE=3 SV=1","T","Signal transduction mechanisms","--"]
["EVM0019033",{"v":6.97e-07,"d":"6.97E-07"},{"v":3.45e-08,"d":"3.45E-08"},-3.330263518,"down","[RTKL]","--","Molecular Function: protein kinase activity (GO:0004672);; Biological Process: phosphorylation (GO:0016310);; Biological Process: cellular macromolecule metabolic process (GO:0044260);; ","--","--","--","Protein LYK5 (Precursor) GN=LYK5 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","T","Signal transduction mechanisms","--"]
["EVM0001244",0.006008258,0.001082884,-3.873231793,"down","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","[R]","General function prediction only ","--","R","General function prediction only","--"]
["EVM0008704",{"v":8e-07,"d":"8.00E-07"},{"v":4.19e-08,"d":"4.19E-08"},-2.320120972,"down","--","--","Molecular Function: extracellular ligand-gated ion channel activity (GO:0005230);; Biological Process: transport (GO:0006810);; Cellular Component: membrane (GO:0016020);; Biological Process: single-organism process (GO:0044699);; ","K05387|0|sly:101262020|glutamate receptor 2.8-like; K05387 glutamate receptor, ionotropic, plant (A)","[PET]","--","Glutamate receptor 2.7 (Precursor) GN=GLR2.7 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=3","P","Inorganic ion transport and metabolism","--"]
["Salvia_newGene_54313",{"v":1.77e-07,"d":"1.77E-07"},{"v":6.8e-09,"d":"6.80E-09"},1.982657973,"up","--","--","--","K13457|6.73022e-81|pop:POPTR_0003s14960g|POPTRDRAFT_554585; disease resistance family protein; K13457 disease resistance protein RPM1 (A)","[T]","Signal transduction mechanisms ","Probable disease resistance protein At1g58390 GN=At1g58390 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=4","T","Signal transduction mechanisms","hypothetical protein MIMGU_mgv1a018451mg [Erythranthe guttata]"]
["EVM0023825",0.0048876,0.00083828,1.08721942,"up","--","--","--","--","[R]","General function prediction only ","--","R","General function prediction only","--"]
["Salvia_newGene_52624",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1B-16 GN=R1B-16 OS=Solanum demissum (Wild potato) PE=3 SV=1","T","Signal transduction mechanisms","PREDICTED: putative late blight resistance protein homolog R1B-16 [Sesamum indicum]"]
["EVM0025658",{"v":4.33e-15,"d":"4.33E-15"},{"v":2.16e-17,"d":"2.16E-17"},-4.227019327,"down","[RTKL]","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; ","K03083|0|cit:102626568|shaggy-related protein kinase kappa-like; K03083 glycogen synthase kinase 3 beta [EC:2.7.11.26] (A)","[G]","Carbohydrate transport and metabolism ","Shaggy-related protein kinase delta GN=ASK4 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","T","Signal transduction mechanisms","--"]
["EVM0008047",0.006008258,0.001082884,-3.873231793,"down","--","--","--","--","[R]","General function prediction only ","Pentatricopeptide repeat-containing protein At4g02750 GN=PCMP-H24 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1","R","General function prediction only","--"]
["EVM0024635",0.000870664,{"v":9.36e-05,"d":"9.36E-05"},-1.307666533,"down","--","--","Biological Process: metabolic process (GO:0008152);; Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788);; ","--","--","--","Pectinesterase 51 (Precursor) GN=F17I14.50 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","--"]
["EVM0025022",0.001435248,0.000164806,1.255222109,"up","[L]","Replication, recombination and repair ","Biological Process: microtubule cytoskeleton organization (GO:0000226);; Molecular Function: DNA binding (GO:0003677);; Molecular Function: DNA topoisomerase type II (ATP-hydrolyzing) activity (GO:0003918);; Molecular Function: ATP binding (GO:0005524);; Biological Process: DNA replication (GO:0006260);; Biological Process: DNA topological change (GO:0006265);; Biological Process: gene silencing (GO:0016458);; Biological Process: regulation of nucleobase-containing compound metabolic process (GO:0019219);; Biological Process: cell cycle process (GO:0022402);; Biological Process: histone lysine methylation (GO:0034968);; Biological Process: regulation of gene expression, epigenetic (GO:0040029);; Biological Process: system development (GO:0048731);; Biological Process: regulation of cellular macromolecule biosynthetic process (GO:2000112);; ","K03164|0|vvi:100253371|DNA topoisomerase 2; K03164 DNA topoisomerase II [EC:5.99.1.3] (A)","[B]","Chromatin structure and dynamics ","DNA topoisomerase 2 GN=TOP2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","B","Chromatin structure and dynamics","--"]
["EVM0014799",0.003617439,0.000544916,-1.575748334,"up,down","--","--","--","--","--","--","--","R","General function prediction only","--"]
["EVM0017962",{"v":4.19e-06,"d":"4.19E-06"},{"v":2.31e-07,"d":"2.31E-07"},-1.90409282,"down","--","--","--","--","--","--","Protein RST1 GN=RST1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","S","Function unknown","--"]
["EVM0001850",0.006340017,0.001206158,1.325876238,"up","--","--","Molecular Function: nucleic acid binding (GO:0003676);; ","K13210|5.10962e-122|sly:101267010|far upstream element-binding protein 2; K13210 far upstream element-binding protein (A)","[A]","RNA processing and modification ","--","A","RNA processing and modification","--"]
["EVM0013189",0.006008258,0.001082884,-3.873231793,"down","--","--","--","--","[S]","Function unknown ","--","S","Function unknown","--"]
["EVM0005110",0.006008258,0.001082884,-3.873231793,"down","--","--","Molecular Function: phospholipase A2 activity (GO:0004623);; Cellular Component: extracellular region (GO:0005576);; Cellular Component: vacuole (GO:0005773);; Cellular Component: Golgi apparatus (GO:0005794);; Biological Process: lipid metabolic process (GO:0006629);; ","K01047|1.48517e-52|crb:CARUB_v10014847mg|hypothetical protein; K01047 secretory phospholipase A2 [EC:3.1.1.4] (A)","--","--","Phospholipase A2-alpha (Precursor) GN=PLA2-ALPHA OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","I","Lipid transport and metabolism","--"]
["EVM0017161",0.002166007,0.000264454,1.437845402,"up","[RTKL]","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein autophosphorylation (GO:0046777);; ","--","--","--","G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 (Precursor) GN=SD25 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","T","Signal transduction mechanisms","--"]
["EVM0021488",0.006008258,0.001082884,-3.873231793,"down","--","--","--","--","[O]","Posttranslational modification, protein turnover, chaperones ","Uncharacterized protein OsI_027940 OS=Oryza sativa subsp. indica (Rice) PE=1 SV=2","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0025339",{"v":4.33e-15,"d":"4.33E-15"},{"v":2.16e-17,"d":"2.16E-17"},-4.227019327,"down","[R]","General function prediction only ","Molecular Function: histone acetyltransferase activity (GO:0004402);; Biological Process: histone acetylation (GO:0016573);; ","K10570|0|pxb:103951114|DNA excision repair protein ERCC-8-like; K10570 DNA excision repair protein ERCC-8 (A)","[KL]","--","Protein pleiotropic regulatory locus 1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","L","Replication, recombination and repair","--"]
["EVM0023607",{"v":6.97e-07,"d":"6.97E-07"},{"v":3.45e-08,"d":"3.45E-08"},-3.330263518,"down","[R]","General function prediction only ","--","K12869|1.0589e-29|vvi:100255371|crooked neck-like protein 1; K12869 crooked neck (A)","[D]","Cell cycle control, cell division, chromosome partitioning ","--","A","RNA processing and modification","--"]
["EVM0022821",0.006008258,0.001082884,-3.873231793,"down","[S]","Function unknown ","Cellular Component: chloroplast thylakoid membrane (GO:0009535);; ","--","--","--","Thylakoid lumenal protein At1g12250, chloroplastic (Precursor) GN=At1g12250 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","S","Function unknown","--"]
["EVM0024112",0.0048876,0.00083828,1.08721942,"up","[K]","Transcription ","Molecular Function: DNA binding (GO:0003677);; Molecular Function: DNA-directed RNA polymerase activity (GO:0003899);; Biological Process: transcription, DNA-templated (GO:0006351);; Molecular Function: ribonucleoside binding (GO:0032549);; ","K03021|0|sot:102600550|DNA-directed RNA polymerase III subunit RPC2-like; K03021 DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6] (A)","[K]","Transcription ","DNA-directed RNA polymerase II subunit 2 GN=At4g21710 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","K","Transcription","--"]
["EVM0024168",0.006340017,0.001206158,1.325876238,"up","[G]","Carbohydrate transport and metabolism ","Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Biological Process: carbohydrate metabolic process (GO:0005975);; ","--","--","--","Mannan endo-1,4-beta-mannosidase 2 (Precursor) GN=MAN2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","--"]
["EVM0022390",{"v":4.69e-08,"d":"4.69E-08"},{"v":1.23e-09,"d":"1.23E-09"},2.255629445,"up","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Molecular Function: copper ion binding (GO:0005507);; Biological Process: lignin catabolic process (GO:0046274);; Cellular Component: apoplast (GO:0048046);; Molecular Function: hydroquinone:oxygen oxidoreductase activity (GO:0052716);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Laccase-17 (Precursor) GN=LAC17 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","--"]
["EVM0015817",{"v":4.33e-15,"d":"4.33E-15"},{"v":3.83e-17,"d":"3.83E-17"},3.394700436,"up","--","--","--","--","--","--","Probable WRKY transcription factor 30 GN=WRKY30 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","K","Transcription","--"]
["EVM0024515",0.0048876,0.00083828,1.08721942,"up","--","--","Molecular Function: aspartic-type endopeptidase activity (GO:0004190);; Biological Process: proteolysis (GO:0006508);; ","--","[O]","Posttranslational modification, protein turnover, chaperones ","Basic 7S globulin low kDa subunit (Precursor) GN=BG OS=Glycine max (Soybean) PE=1 SV=2","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0003865",{"v":4.33e-15,"d":"4.33E-15"},{"v":2.16e-17,"d":"2.16E-17"},-4.227019327,"down","--","--","--","--","[I]","Lipid transport and metabolism ","Phospholipase A1-IIdelta GN=At2g42690 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","I","Lipid transport and metabolism","--"]
["EVM0023048",0.004969279,0.000866735,-2.685422322,"down","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Molecular Function: binding (GO:0005488);; Molecular Function: oxidoreductase activity (GO:0016491);; ","--","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Ferruginol synthase {ECO:0000303|PubMed:23812755} OS=Salvia miltiorrhiza (Chinese sage) PE=1 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","--"]
["EVM0010719",0.00280583,0.000350729,1.891294437,"up,down","[R]","General function prediction only ","Molecular Function: GTP binding (GO:0005525);; Cellular Component: vacuole (GO:0005773);; Cellular Component: Golgi-associated vesicle (GO:0005798);; Biological Process: small GTPase mediated signal transduction (GO:0007264);; Cellular Component: plastid (GO:0009536);; ","K07937|5.14326e-132|sot:102586978|ADP-ribosylation factor 2-like; K07937 ADP-ribosylation factor 1 (A)","[U]","Intracellular trafficking, secretion, and vesicular transport ","ADP-ribosylation factor 2 GN=OJ1119_H02.17 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2","U","Intracellular trafficking, secretion, and vesicular transport","--"]
["EVM0016682",0.003617439,0.000544916,-1.575748334,"up,down","--","--","--","--","[S]","Function unknown ","--","S","Function unknown","--"]
["EVM0002314",{"v":4.69e-08,"d":"4.69E-08"},{"v":1.23e-09,"d":"1.23E-09"},2.255629445,"up","--","--","--","K14790|0|sot:102587021|pumilio homolog 23-like; K14790 nucleolar protein 9 (A)","[J]","Translation, ribosomal structure and biogenesis ","Pumilio homolog 23 GN=APUM23 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","J","Translation, ribosomal structure and biogenesis","--"]
["EVM0009304",{"v":1.22e-07,"d":"1.22E-07"},{"v":3.56e-09,"d":"3.56E-09"},2.01139798,"up","[O]","Posttranslational modification, protein turnover, chaperones ","Molecular Function: metalloendopeptidase activity (GO:0004222);; Molecular Function: ATP binding (GO:0005524);; Biological Process: ATP catabolic process (GO:0006200);; Biological Process: proteolysis (GO:0006508);; Biological Process: microtubule nucleation (GO:0007020);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: chloroplast fission (GO:0010020);; Molecular Function: ATPase activity (GO:0016887);; ","--","[O]","Posttranslational modification, protein turnover, chaperones ","ATP-dependent zinc metalloprotease FtsH {ECO:0000255|HAMAP-Rule:MF_01458} OS=Porphyra purpurea (Red seaweed) PE=3 SV=1","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0027924",{"v":8e-07,"d":"8.00E-07"},{"v":4.19e-08,"d":"4.19E-08"},-2.320120972,"down","[S]","Function unknown ","--","--","--","--","--","R","General function prediction only","--"]
["EVM0005379",0.006008258,0.001082884,-3.873231793,"down","[R]","General function prediction only ","Molecular Function: nucleotide binding (GO:0000166);; Molecular Function: RNA binding (GO:0003723);; Cellular Component: cytosol (GO:0005829);; Biological Process: fatty acid beta-oxidation (GO:0006635);; Biological Process: vernalization response (GO:0010048);; Biological Process: protein import into peroxisome matrix (GO:0016558);; Biological Process: photoperiodism, flowering (GO:0048573);; ","K13161|0|sot:102604470|heterogeneous nuclear ribonucleoprotein Q-like; K13161 heterogeneous nuclear ribonucleoprotein R (A)","[A]","RNA processing and modification ","Polyadenylate-binding protein 4 GN=PAB4 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","A","RNA processing and modification","--"]
["EVM0007426",0.000870664,{"v":9.36e-05,"d":"9.36E-05"},-1.307666533,"down","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0009214",0.002882341,0.000370585,-1.202885838,"down","[V]","Defense mechanisms ","Biological Process: drug transmembrane transport (GO:0006855);; Molecular Function: drug transmembrane transporter activity (GO:0015238);; Molecular Function: antiporter activity (GO:0015297);; Cellular Component: membrane (GO:0016020);; ","K03327|1.49993e-111|sot:102593452|protein TRANSPARENT TESTA 12-like; K03327 multidrug resistance protein, MATE family (A)","[R]","General function prediction only ","Protein TRANSPARENT TESTA 12 GN=F17J16_80 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","--"]
["Salvia_newGene_43854",0.003617439,0.000544916,-1.575748334,"up,down","--","--","--","--","[R]","General function prediction only ","--","L","Replication, recombination and repair","PREDICTED: uncharacterized protein LOC102663605 [Glycine max]"]
["EVM0009199",0.003617439,0.000544916,-1.575748334,"up,down","[K]","Transcription ","--","K03018|0|sot:102603938|DNA-directed RNA polymerase III subunit rpc1-like; K03018 DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6] (A)","[K]","Transcription ","DNA-directed RNA polymerase II subunit 1 GN=F4B14.70 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=3","K","Transcription","--"]
["EVM0000034",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1A-6 GN=R1A-6 OS=Solanum demissum (Wild potato) PE=3 SV=2","T","Signal transduction mechanisms","--"]
["EVM0015835",0.0048876,0.00083828,1.08721942,"up","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0024565",0.001435248,0.000164806,1.255222109,"up","--","--","--","K11978|0|sot:102603446|E3 ubiquitin-protein ligase UBR2-like; K11978 E3 ubiquitin-protein ligase UBR3 [EC:6.3.2.19] (A)","[O]","Posttranslational modification, protein turnover, chaperones ","--","O","Posttranslational modification, protein turnover, chaperones","--"]
["Salvia_newGene_53403",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1B-16 GN=R1B-16 OS=Solanum demissum (Wild potato) PE=3 SV=1","T","Signal transduction mechanisms","PREDICTED: putative late blight resistance protein homolog R1B-16 [Sesamum indicum]"]
["EVM0008384",0.003305481,0.000451621,-1.575748334,"up,down","[G]","Carbohydrate transport and metabolism ","Molecular Function: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity (GO:0004801);; Biological Process: carbohydrate metabolic process (GO:0005975);; Biological Process: acetyl-CoA metabolic process (GO:0006084);; Molecular Function: zinc ion binding (GO:0008270);; Cellular Component: chloroplast stroma (GO:0009570);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: sterol biosynthetic process (GO:0016126);; Biological Process: brassinosteroid biosynthetic process (GO:0016132);; Biological Process: cysteine biosynthetic process (GO:0019344);; ","K00616|0|sot:102581220|probable transaldolase-like; K00616 transaldolase [EC:2.2.1.2] (A)","[G]","Carbohydrate transport and metabolism ","--","G","Carbohydrate transport and metabolism","--"]
["EVM0016831",0.00280583,0.000350729,1.891294437,"up","--","--","Molecular Function: alpha-1,3-mannosyltransferase activity (GO:0000033);; Cellular Component: endoplasmic reticulum (GO:0005783);; Biological Process: protein glycosylation (GO:0006486);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: cellulose biosynthetic process (GO:0030244);; Biological Process: Golgi vesicle transport (GO:0048193);; ","K03845|0|sot:102598887|dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase-like; K03845 alpha-1,3-mannosyltransferase [EC:2.4.1.258] (A)","[G]","Carbohydrate transport and metabolism ","Dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase GN=ALG3 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","G","Carbohydrate transport and metabolism","--"]
["EVM0002116",0.003617439,0.000544916,-1.575748334,"up,down","[R]","General function prediction only ","Molecular Function: GTPase activity (GO:0003924);; Molecular Function: thiamine-phosphate diphosphorylase activity (GO:0004789);; Molecular Function: GTP binding (GO:0005525);; Biological Process: GTP catabolic process (GO:0006184);; Biological Process: rRNA processing (GO:0006364);; Biological Process: thiamine biosynthetic process (GO:0009228);; Biological Process: embryo development ending in seed dormancy (GO:0009793);; Biological Process: chloroplast relocation (GO:0009902);; Biological Process: thylakoid membrane organization (GO:0010027);; Biological Process: photosystem II assembly (GO:0010207);; Biological Process: vegetative to reproductive phase transition of meristem (GO:0010228);; Biological Process: iron-sulfur cluster assembly (GO:0016226);; Cellular Component: chloroplast membrane (GO:0031969);; Biological Process: regulation of protein dephosphorylation (GO:0035304);; Biological Process: transcription from plastid promoter (GO:0042793);; Biological Process: positive regulation of transcription, DNA-templated (GO:0045893);; Biological Process: ovule development (GO:0048481);; ","--","[O]","Posttranslational modification, protein turnover, chaperones ","--","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0020848",{"v":4.33e-15,"d":"4.33E-15"},{"v":2.16e-17,"d":"2.16E-17"},-4.227019327,"down","[RTKL]","--","--","--","[T]","Signal transduction mechanisms ","Putative receptor-like protein kinase At5g39000 (Precursor) GN=At5g39000 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1","T","Signal transduction mechanisms","--"]
["EVM0026953",{"v":1.77e-07,"d":"1.77E-07"},{"v":6.8e-09,"d":"6.80E-09"},1.982657973,"up","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0010518",0.006008258,0.001082884,-3.873231793,"down","--","--","--","--","[R]","General function prediction only ","Pentatricopeptide repeat-containing protein At5g16860 GN=PCMP-H92 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","--"]
["Salvia_newGene_58101",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1C-3 GN=R1C-3 OS=Solanum demissum (Wild potato) PE=3 SV=1","T","Signal transduction mechanisms","PREDICTED: putative late blight resistance protein homolog R1B-16 [Sesamum indicum]"]
["EVM0026567",{"v":4.33e-15,"d":"4.33E-15"},{"v":2.16e-17,"d":"2.16E-17"},-4.227019327,"down","[R]","General function prediction only ","--","K06927|0|sot:102584229|diphthine--ammonia ligase-like; K06927 diphthine-ammonia ligase [EC:6.3.1.14] (A)","[J]","Translation, ribosomal structure and biogenesis ","--","J","Translation, ribosomal structure and biogenesis","--"]
["Salvia_newGene_50104",{"v":9.26e-06,"d":"9.26E-06"},{"v":5.92e-07,"d":"5.92E-07"},2.146060612,"up","--","--","--","--","[L]","Replication, recombination and repair ","Zinc finger BED domain-containing protein RICESLEEPER 4 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=3","L","Replication, recombination and repair","PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 1-like [Sesamum indicum]"]
["EVM0000680",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1A-6 GN=R1A-6 OS=Solanum demissum (Wild potato) PE=3 SV=2","T","Signal transduction mechanisms","--"]
["EVM0019420",0.001255966,0.00013874,1.248541407,"up","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Molecular Function: iron ion binding (GO:0005506);; Molecular Function: electron carrier activity (GO:0009055);; Biological Process: ent-kaurene oxidation to kaurenoic acid (GO:0010241);; Molecular Function: heme binding (GO:0020037);; Molecular Function: ent-kaurene oxidase activity (GO:0052615);; Molecular Function: ent-kaur-16-en-19-ol oxidase activity (GO:0052616);; Molecular Function: ent-kaur-16-en-19-al oxidase activity (GO:0052617);; ","K04122|0|mdm:103441571|ent-kaurene oxidase, chloroplastic-like; K04122 ent-kaurene oxidase [EC:1.14.13.78] (A)","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Ent-kaurene oxidase, chloroplastic GN=T1N24.23 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","Q","Secondary metabolites biosynthesis, transport and catabolism","--"]
["EVM0015771",{"v":8.08e-06,"d":"8.08E-06"},{"v":4.7e-07,"d":"4.70E-07"},1.894718978,"up","[J]","Translation, ribosomal structure and biogenesis ","Biological Process: RNA methylation (GO:0001510);; Molecular Function: RNA binding (GO:0003723);; Biological Process: RNA processing (GO:0006396);; Molecular Function: RNA methyltransferase activity (GO:0008173);; ","--","[J]","Translation, ribosomal structure and biogenesis ","Zinc finger CCCH domain-containing protein 24 GN=At2g28450 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","J","Translation, ribosomal structure and biogenesis","--"]
["Salvia_newGene_41061",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1B-14 GN=R1B-14 OS=Solanum demissum (Wild potato) PE=3 SV=1","T","Signal transduction mechanisms","PREDICTED: putative late blight resistance protein homolog R1A-10 isoform X1 [Sesamum indicum]"]
["EVM0006098",0.006340017,0.001203061,1.325876238,"up","[RTKL]","--","Molecular Function: protein kinase activity (GO:0004672);; ","--","[T]","Signal transduction mechanisms ","Probable receptor-like protein kinase At5g38990 (Precursor) GN=At5g38990 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","T","Signal transduction mechanisms","--"]
["EVM0022827",0.006008258,0.001082884,-3.873231793,"down","--","--","--","--","--","--","Protein WVD2-like 1 GN=WDL1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","S","Function unknown","--"]
["EVM0020077",{"v":1.22e-07,"d":"1.22E-07"},{"v":3.56e-09,"d":"3.56E-09"},2.01139798,"up","--","--","--","--","--","--","COBRA-like protein 7 (Precursor) GN=dl4100c OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","R","General function prediction only","--"]
["Salvia_newGene_54491",0.001435248,0.000164806,1.255222109,"up","--","--","--","--","--","--","--","S","Function unknown","cinnamate 4-hydroxylase 2 [Salvia miltiorrhiza]"]
["EVM0020439",0.000429328,{"v":4.12e-05,"d":"4.12E-05"},-1.334295441,"down","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0001992",0.000131541,{"v":1.15e-05,"d":"1.15E-05"},1.780467443,"up","--","--","--","--","--","--","Probable mediator of RNA polymerase II transcription subunit 26c GN=MYH9.6 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","K","Transcription","--"]
["EVM0010503",0.002108628,0.000251319,1.378487044,"up","--","--","Molecular Function: metal ion binding (GO:0046872);; ","--","[O]","Posttranslational modification, protein turnover, chaperones ","E3 ubiquitin protein ligase RIE1 GN=RIE1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0006470",{"v":4.69e-08,"d":"4.69E-08"},{"v":1.23e-09,"d":"1.23E-09"},2.255629445,"up","--","--","--","--","--","--","--","R","General function prediction only","--"]
["EVM0026956",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1B-16 GN=R1B-16 OS=Solanum demissum (Wild potato) PE=3 SV=1","T","Signal transduction mechanisms","--"]
["EVM0021267",{"v":8.08e-06,"d":"8.08E-06"},{"v":4.7e-07,"d":"4.70E-07"},1.894718978,"up","--","--","--","--","--","--","--","K","Transcription","--"]
["EVM0022793",{"v":4.69e-08,"d":"4.69E-08"},{"v":1.23e-09,"d":"1.23E-09"},2.255629445,"up","--","--","--","K14311|0|vvi:100264071|uncharacterized LOC100264071; K14311 nuclear pore complex protein Nup188 (A)","--","--","--","S","Function unknown","--"]
["EVM0027916",0.0048876,0.00083828,1.08721942,"up","--","--","--","--","[R]","General function prediction only ","Pentatricopeptide repeat-containing protein At5g56310 GN=PCMP-E13 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","--"]
["EVM0027245",{"v":4.33e-15,"d":"4.33E-15"},{"v":2.16e-17,"d":"2.16E-17"},-4.227019327,"down","--","--","--","K17964|0|sot:102578360|pentatricopeptide repeat-containing protein At2g32630-like; K17964 leucine-rich PPR motif-containing protein, mitochondrial (A)","[R]","General function prediction only ","Pentatricopeptide repeat-containing protein At2g32630 GN=At2g32630 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1","R","General function prediction only","--"]
["EVM0000664",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1A-6 GN=R1A-6 OS=Solanum demissum (Wild potato) PE=3 SV=2","T","Signal transduction mechanisms","--"]
["EVM0003557",0.006340017,0.001206158,1.325876238,"up","--","--","--","--","[O]","Posttranslational modification, protein turnover, chaperones ","Aspartic proteinase nepenthesin-2 (Precursor) GN=nep2 OS=Nepenthes gracilis (Slender pitcher plant) PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0015413",0.001435248,0.000164806,1.255222109,"up","--","--","Biological Process: protein peptidyl-prolyl isomerization (GO:0000413);; Molecular Function: peptidyl-prolyl cis-trans isomerase activity (GO:0003755);; Molecular Function: FK506 binding (GO:0005528);; Cellular Component: nucleus (GO:0005634);; Biological Process: mitotic recombination (GO:0006312);; Cellular Component: chloroplast thylakoid lumen (GO:0009543);; Biological Process: embryo sac egg cell differentiation (GO:0009560);; Cellular Component: membrane (GO:0016020);; Biological Process: transcription factor import into nucleus (GO:0042991);; ","K14826|3.90613e-09|ath:AT3G12340|FKBP-like peptidyl-prolyl cis-trans isomerase family protein; K14826 FK506-binding nuclear protein [EC:5.2.1.8] (A)","[O]","Posttranslational modification, protein turnover, chaperones ","Peptidyl-prolyl cis-trans isomerase FKBP43 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0000321",0.006705101,0.001353126,-1.606064416,"down","[R]","General function prediction only ","--","K13217|2.33008e-156|sot:102590021|uncharacterized LOC102590021; K13217 pre-mRNA-processing factor 39 (A)","[A]","RNA processing and modification ","--","A","RNA processing and modification","--"]
["Salvia_newGene_25586",{"v":4.33e-15,"d":"4.33E-15"},{"v":3.83e-17,"d":"3.83E-17"},3.394700436,"up","[J]","Translation, ribosomal structure and biogenesis ","--","K03679|5.14286e-10|zma:100216860|hypothetical protein; K03679 exosome complex component RRP4 (A)","[A]","RNA processing and modification ","--","J","Translation, ribosomal structure and biogenesis","PREDICTED: exosome complex component rrp4-like isoform X1 [Eucalyptus grandis] "]
["EVM0011062",0.006008258,0.001082884,-3.873231793,"down","--","--","--","--","--","--","Serine/threonine-protein kinase ATM GN=ATM OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","--"]
["EVM0007404",0.0048876,0.00083828,1.08721942,"up","--","--","--","--","[GC]","--","UDP-glycosyltransferase 86A1 GN=UGT86A1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","G","Carbohydrate transport and metabolism","--"]
["EVM0003600",{"v":4.33e-15,"d":"4.33E-15"},{"v":3.83e-17,"d":"3.83E-17"},3.394700436,"up","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0000576",0.004969279,0.000866735,-2.685422322,"down","--","--","Cellular Component: plasma membrane (GO:0005886);; Biological Process: cell adhesion (GO:0007155);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: meristem initiation (GO:0010014);; Biological Process: trichome morphogenesis (GO:0010090);; Biological Process: cell growth (GO:0016049);; Biological Process: actin nucleation (GO:0045010);; Biological Process: regulation of cell differentiation (GO:0045595);; Biological Process: developmental growth (GO:0048589);; Biological Process: root hair cell differentiation (GO:0048765);; Biological Process: cell wall organization (GO:0071555);; ","--","[T]","Signal transduction mechanisms ","187-kDa microtubule-associated protein AIR9 GN=AIR9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","T","Signal transduction mechanisms","--"]
["EVM0006928",{"v":1.77e-07,"d":"1.77E-07"},{"v":6.8e-09,"d":"6.80E-09"},1.982657973,"up","--","--","--","--","--","--","Transcription factor bHLH113 GN=MLD14.24 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","K","Transcription","--"]
["EVM0003029",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1A-6 GN=R1A-6 OS=Solanum demissum (Wild potato) PE=3 SV=2","T","Signal transduction mechanisms","--"]
["Salvia_newGene_64133",0.006008258,0.001082884,-3.873231793,"down","--","--","--","--","[R]","General function prediction only ","Pentatricopeptide repeat-containing protein At1g12300, mitochondrial (Precursor) GN=At1g12300 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Sesamum indicum]"]
["EVM0027211",{"v":4.33e-15,"d":"4.33E-15"},{"v":2.16e-17,"d":"2.16E-17"},-4.227019327,"down","--","--","--","--","--","--","Root meristem growth factor 6 (Precursor) GN=RGF6 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1","R","General function prediction only","--"]
["Salvia_newGene_59247",{"v":8.08e-06,"d":"8.08E-06"},{"v":4.7e-07,"d":"4.70E-07"},1.894718978,"up","--","--","--","--","[GC]","--","UDP-glycosyltransferase 86A1 GN=UGT86A1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","CG","--","hypothetical protein MIMGU_mgv1a005271mg [Erythranthe guttata] "]
["EVM0021354",0.000870664,{"v":9.36e-05,"d":"9.36E-05"},-1.307666533,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Disease resistance RPP8-like protein 3 GN=RPP8L3 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","T","Signal transduction mechanisms","--"]
["EVM0015192",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1A-6 GN=R1A-6 OS=Solanum demissum (Wild potato) PE=3 SV=2","T","Signal transduction mechanisms","--"]
["EVM0014229",0.000834612,{"v":8.25e-05,"d":"8.25E-05"},-1.278991609,"down","--","--","--","--","--","--","--","R","General function prediction only","--"]
["EVM0023220",0.0048876,0.00083828,1.08721942,"up","--","--","--","--","[GC]","--","UDP-glycosyltransferase 86A1 GN=UGT86A1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","G","Carbohydrate transport and metabolism","--"]
["Salvia_newGene_39491",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1A-6 GN=R1A-6 OS=Solanum demissum (Wild potato) PE=3 SV=2","T","Signal transduction mechanisms","hypothetical protein MIMGU_mgv1a018989mg [Erythranthe guttata]"]
["EVM0018472",0.00084516,{"v":8.6e-05,"d":"8.60E-05"},-1.53399087,"down","--","--","Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: leaf morphogenesis (GO:0009965);; Biological Process: regulation of proton transport (GO:0010155);; Biological Process: cell differentiation (GO:0030154);; Biological Process: protein autophosphorylation (GO:0046777);; ","--","--","--","--","S","Function unknown","--"]
["EVM0016596",0.000859097,{"v":8.99e-05,"d":"8.99E-05"},1.605568787,"up","--","--","Cellular Component: plasma membrane (GO:0005886);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: photomorphogenesis (GO:0009640);; Biological Process: embryo development ending in seed dormancy (GO:0009793);; Biological Process: seed germination (GO:0009845);; Biological Process: regulation of flower development (GO:0009909);; Biological Process: meristem structural organization (GO:0009933);; Biological Process: seed dormancy process (GO:0010162);; Biological Process: sugar mediated signaling pathway (GO:0010182);; Biological Process: vegetative to reproductive phase transition of meristem (GO:0010228);; Biological Process: protein ubiquitination (GO:0016567);; Biological Process: lipid storage (GO:0019915);; Biological Process: response to freezing (GO:0050826);; ","--","--","--","Synaptotagmin-3 GN=F21E1.140 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","--"]
["EVM0013776",{"v":4.69e-08,"d":"4.69E-08"},{"v":1.23e-09,"d":"1.23E-09"},2.255629445,"up","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Molecular Function: monooxygenase activity (GO:0004497);; Molecular Function: iron ion binding (GO:0005506);; Molecular Function: electron carrier activity (GO:0009055);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705);; Molecular Function: heme binding (GO:0020037);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","[QI]","--","Cytochrome P450 CYP72A219 OS=Panax ginseng (Korean ginseng) PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","--"]
["EVM0017717",0.006008258,0.001082884,1.325876238,"up,down","[O]","Posttranslational modification, protein turnover, chaperones ","--","K09527|0|vvi:100256902|uncharacterized LOC100256902; K09527 DnaJ homolog subfamily C member 7 (A)","[O]","Posttranslational modification, protein turnover, chaperones ","TPR repeat-containing thioredoxin TTL1 GN=TTL1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0003527",0.00084516,{"v":8.6e-05,"d":"8.60E-05"},-1.53399087,"down","[GC]","--","Biological Process: metabolic process (GO:0008152);; Molecular Function: UDP-glucosyltransferase activity (GO:0035251);; ","--","[GC]","--","Scopoletin glucosyltransferase GN=TOGT1 OS=Nicotiana tabacum (Common tobacco) PE=1 SV=1","G","Carbohydrate transport and metabolism","--"]
["EVM0027338",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1A-6 GN=R1A-6 OS=Solanum demissum (Wild potato) PE=3 SV=2","T","Signal transduction mechanisms","--"]
["Salvia_newGene_52034",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1B-14 GN=R1B-14 OS=Solanum demissum (Wild potato) PE=3 SV=1","T","Signal transduction mechanisms","hypothetical protein MIMGU_mgv1a020452mg [Erythranthe guttata]"]
["Salvia_newGene_51954",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1A-6 GN=R1A-6 OS=Solanum demissum (Wild potato) PE=3 SV=2","T","Signal transduction mechanisms","hypothetical protein MIMGU_mgv1a020452mg [Erythranthe guttata]"]
["EVM0024796",{"v":4.33e-15,"d":"4.33E-15"},{"v":2.16e-17,"d":"2.16E-17"},-4.227019327,"down","[LKJ]","--","Molecular Function: RNA binding (GO:0003723);; Molecular Function: ATP binding (GO:0005524);; Molecular Function: ATP-dependent helicase activity (GO:0008026);; ","K13179|0|vvi:100242258|DEAD-box ATP-dependent RNA helicase 27; K13179 ATP-dependent RNA helicase DDX18/HAS1 [EC:3.6.4.13] (A)","[A]","RNA processing and modification ","DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa subsp. japonica (Rice) PE=3 SV=1","A","RNA processing and modification","--"]
["EVM0007676",{"v":4.33e-15,"d":"4.33E-15"},{"v":2.16e-17,"d":"2.16E-17"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Late blight resistance protein R1-A GN=R1A OS=Solanum demissum (Wild potato) PE=3 SV=1","T","Signal transduction mechanisms","--"]
["Salvia_newGene_53872",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1A-6 GN=R1A-6 OS=Solanum demissum (Wild potato) PE=3 SV=2","T","Signal transduction mechanisms","hypothetical protein MIMGU_mgv1a001232mg [Erythranthe guttata]"]
["EVM0021730",0.000870664,{"v":9.36e-05,"d":"9.36E-05"},-1.307666533,"down","--","--","--","--","[R]","General function prediction only ","Pentatricopeptide repeat-containing protein At1g80150, mitochondrial (Precursor) GN=At1g80150 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","R","General function prediction only","--"]
["EVM0018858",{"v":4.33e-15,"d":"4.33E-15"},{"v":2.16e-17,"d":"2.16E-17"},-4.227019327,"down","--","--","--","--","--","--","--","R","General function prediction only","--"]
["EVM0007449",0.006008258,0.001082884,-3.873231793,"down","[R]","General function prediction only ","Molecular Function: ARF guanyl-nucleotide exchange factor activity (GO:0005086);; Cellular Component: early endosome (GO:0005769);; Cellular Component: trans-Golgi network (GO:0005802);; Cellular Component: cytosol (GO:0005829);; Biological Process: organ morphogenesis (GO:0009887);; Biological Process: tissue development (GO:0009888);; Biological Process: positive regulation of organelle organization (GO:0010638);; Biological Process: vesicle-mediated transport (GO:0016192);; Biological Process: regulation of ARF protein signal transduction (GO:0032012);; Biological Process: regulation of chromosome organization (GO:0033044);; Biological Process: growth (GO:0040007);; Biological Process: defense response to bacterium (GO:0042742);; ","K13462|0|tcc:TCM_037433|HOPM interactor 7 isoform 1; K13462 guanine nucleotide-exchange factor (A)","[U]","Intracellular trafficking, secretion, and vesicular transport ","Brefeldin A-inhibited guanine nucleotide-exchange protein 5 GN=F7K15_150 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","U","Intracellular trafficking, secretion, and vesicular transport","--"]
["EVM0017056",0.000131541,{"v":1.15e-05,"d":"1.15E-05"},1.780467443,"up","[E]","Amino acid transport and metabolism ","Molecular Function: transporter activity (GO:0005215);; Biological Process: transport (GO:0006810);; Cellular Component: membrane (GO:0016020);; ","--","[E]","Amino acid transport and metabolism ","Protein NRT1/ PTR FAMILY 2.13 GN=T17F3.10 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","P","Inorganic ion transport and metabolism","--"]
["EVM0020470",0.004969279,0.000866735,-2.685422322,"down","[BQ]","--","Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: NAD-dependent histone deacetylase activity (H3-K14 specific) (GO:0032041);; Molecular Function: NAD-dependent histone deacetylase activity (H3-K9 specific) (GO:0046969);; Molecular Function: NAD-dependent histone deacetylase activity (H4-K16 specific) (GO:0046970);; Biological Process: histone H3 deacetylation (GO:0070932);; Biological Process: histone H4 deacetylation (GO:0070933);; Molecular Function: NAD-dependent histone deacetylase activity (H3-K18 specific) (GO:0097372);; ","K06067|0|vvi:100244967|histone deacetylase 19; K06067 histone deacetylase 1/2 [EC:3.5.1.98] (A)","[B]","Chromatin structure and dynamics ","Histone deacetylase 19 GN=F20D10.250 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","B","Chromatin structure and dynamics","--"]
["EVM0011885",0.003305481,0.000451621,-1.575748334,"up,down","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0010365",0.006008258,0.001082884,-3.873231793,"down","[L]","Replication, recombination and repair ","Molecular Function: nucleic acid binding (GO:0003676);; Biological Process: DNA metabolic process (GO:0006259);; Molecular Function: metal ion binding (GO:0046872);; ","--","[R]","General function prediction only ","Uncharacterized mitochondrial protein AtMg00860 GN=AtMg00860 OS=Arabidopsis thaliana (Mouse-ear cress) PE=4 SV=1","L","Replication, recombination and repair","--"]
["EVM0010842",0.003305481,0.000451621,-1.575748334,"up,down","[KAD]","--","--","--","[K]","Transcription ","Myb-related protein 3R-1 GN=MYB3R-1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","K","Transcription","--"]
["EVM0026576",{"v":4.69e-08,"d":"4.69E-08"},{"v":1.23e-09,"d":"1.23E-09"},2.255629445,"up","--","--","--","--","--","--","QWRF motif-containing protein 2 GN=QWRF2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","--"]
["Salvia_newGene_81467",0.001255966,0.00013874,1.248541407,"up","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1A-6 GN=R1A-6 OS=Solanum demissum (Wild potato) PE=3 SV=2","T","Signal transduction mechanisms","hypothetical protein MIMGU_mgv1a025003mg [Erythranthe guttata]"]
["EVM0002081",0.00084516,{"v":8.6e-05,"d":"8.60E-05"},-1.53399087,"down","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: translation elongation factor activity (GO:0003746);; Molecular Function: GTPase activity (GO:0003924);; Molecular Function: GTP binding (GO:0005525);; Biological Process: GTP catabolic process (GO:0006184);; Biological Process: translational elongation (GO:0006414);; ","K14536|0|tcc:TCM_001431|Ribosomal protein S5/Elongation factor G/III/V family protein; K14536 ribosome assembly protein 1 [EC:3.6.5.-] (A)","[J]","Translation, ribosomal structure and biogenesis ","Elongation factor 2 OS=Beta vulgaris (Sugar beet) PE=2 SV=1","J","Translation, ribosomal structure and biogenesis","--"]
["EVM0009788",0.004594858,0.000734643,1.289646579,"up","--","--","Cellular Component: integral component of membrane (GO:0016021);; Biological Process: transmembrane transport (GO:0055085);; ","K03452|0|rcu:RCOM_1178350|magnesium/proton exchanger, putative; K03452 magnesium/proton exchanger (A)","[PT]","--","Magnesium/proton exchanger GN=T30B22.10 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=3","P","Inorganic ion transport and metabolism","--"]
["EVM0010255",0.001255966,0.00013874,1.248541407,"up","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1B-17 GN=R1B-17 OS=Solanum demissum (Wild potato) PE=3 SV=1","T","Signal transduction mechanisms","--"]
["EVM0008558",0.002108628,0.000251319,1.378487044,"up","[MG]","--","Cellular Component: plasma membrane (GO:0005886);; Biological Process: D-xylose metabolic process (GO:0042732);; Biological Process: cellular metabolic process (GO:0044237);; Molecular Function: UDP-glucuronate decarboxylase activity (GO:0048040);; Molecular Function: coenzyme binding (GO:0050662);; ","--","[GM]","--","UDP-glucuronic acid decarboxylase 6 GN=UXS6 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","G","Carbohydrate transport and metabolism","--"]
["EVM0011529",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1A-6 GN=R1A-6 OS=Solanum demissum (Wild potato) PE=3 SV=2","T","Signal transduction mechanisms","--"]
["EVM0006449",{"v":8.08e-06,"d":"8.08E-06"},{"v":4.7e-07,"d":"4.70E-07"},1.894718978,"up","--","--","Cellular Component: ubiquitin ligase complex (GO:0000151);; Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: protein ubiquitination (GO:0016567);; Molecular Function: ubiquitin-ubiquitin ligase activity (GO:0034450);; Biological Process: cellular process regulating host cell cycle in response to virus (GO:0060154);; ","K12169|0|sot:102589041|E3 ubiquitin-protein ligase RKP-like; K12169 Kip1 ubiquitination-promoting complex protein 1 [EC:6.3.2.19] (A)","[A]","RNA processing and modification ","E3 ubiquitin-protein ligase RKP GN=F7D8.33 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","O","Posttranslational modification, protein turnover, chaperones","--"]
["Salvia_newGene_71301",{"v":4.33e-15,"d":"4.33E-15"},{"v":2.16e-17,"d":"2.16E-17"},-4.227019327,"down","[L]","Replication, recombination and repair ","Molecular Function: nucleic acid binding (GO:0003676);; Molecular Function: catalytic activity (GO:0003824);; Biological Process: DNA metabolic process (GO:0006259);; Molecular Function: metal ion binding (GO:0046872);; ","--","[R]","General function prediction only ","--","R","General function prediction only","DNA/RNA polymerases superfamily protein [Theobroma cacao] "]
["EVM0011144",0.002108628,0.000251319,1.378487044,"up","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0014089",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1B-16 GN=R1B-16 OS=Solanum demissum (Wild potato) PE=3 SV=1","T","Signal transduction mechanisms","--"]
["EVM0004030",0.006008258,0.001082884,-3.873231793,"down","--","--","Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","Probable WRKY transcription factor 56 GN=WRKY56 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","K","Transcription","--"]
["EVM0005795",0.001435248,0.000164806,1.255222109,"up","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0008669",{"v":4.69e-08,"d":"4.69E-08"},{"v":1.23e-09,"d":"1.23E-09"},2.255629445,"up","--","--","Molecular Function: monooxygenase activity (GO:0004497);; Molecular Function: iron ion binding (GO:0005506);; Molecular Function: electron carrier activity (GO:0009055);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705);; Molecular Function: heme binding (GO:0020037);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","[QI]","--","Cytochrome P450 CYP72A219 OS=Panax ginseng (Korean ginseng) PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","--"]
["EVM0008863",0.006008258,0.001082884,-3.873231793,"down","--","--","Cellular Component: membrane (GO:0016020);; Molecular Function: oxidoreductase activity (GO:0016491);; Molecular Function: metal ion binding (GO:0046872);; ","K15472|6.31459e-134|sly:101251277|premnaspirodiene oxygenase; K15472 premnaspirodiene oxygenase [EC:1.14.13.121] (A)","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Premnaspirodiene oxygenase GN=CYP71D55 OS=Hyoscyamus muticus (Egyptian henbane) PE=1 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","--"]
["EVM0015332",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1B-16 GN=R1B-16 OS=Solanum demissum (Wild potato) PE=3 SV=1","T","Signal transduction mechanisms","--"]
["EVM0025398",0.00280583,0.000350729,1.891294437,"up","--","--","--","--","--","--","Squamosa promoter-binding-like protein 13B GN=MFB16.6 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1","K","Transcription","--"]
["EVM0023080",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Late blight resistance protein R1-A GN=R1A OS=Solanum demissum (Wild potato) PE=3 SV=1","T","Signal transduction mechanisms","--"]
["EVM0017510",0.001435248,0.000164806,1.255222109,"up","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","--","--","[QI]","--","Cytochrome P450 CYP72A219 OS=Panax ginseng (Korean ginseng) PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","--"]
["EVM0003258",0.002108628,0.000251319,1.378487044,"up","--","--","Molecular Function: enzyme inhibitor activity (GO:0004857);; Molecular Function: pectinesterase activity (GO:0030599);; Biological Process: negative regulation of catalytic activity (GO:0043086);; ","--","--","--","21 kDa protein (Precursor) OS=Daucus carota (Wild carrot) PE=2 SV=1","R","General function prediction only","--"]
["EVM0006441",0.002108628,0.000251319,1.378487044,"up","--","--","Molecular Function: transferase activity, transferring glycosyl groups (GO:0016757);; ","--","[GC]","--","Putative UDP-glucose flavonoid 3-O-glucosyltransferase 3 {ECO:0000250|UniProtKB:Q2V6K0} OS=Fragaria ananassa (Strawberry) PE=2 SV=1","G","Carbohydrate transport and metabolism","--"]
["EVM0016479",{"v":1.22e-07,"d":"1.22E-07"},{"v":3.56e-09,"d":"3.56E-09"},2.01139798,"up","--","--","Biological Process: single-organism process (GO:0044699);; ","K17479|7.65658e-91|vvi:100247840|uncharacterized LOC100247840; K17479 glutaredoxin domain-containing cysteine-rich protein 1 (A)","[O]","Posttranslational modification, protein turnover, chaperones ","Uncharacterized protein At5g39865 GN=At5g39865 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0018258",0.003350436,0.000486982,-1.819323946,"down","--","--","--","--","--","--","--","R","General function prediction only","--"]
["EVM0022481",0.006340017,0.001206158,1.325876238,"up","--","--","--","--","--","--","Protein BASIC PENTACYSTEINE4 GN=BPC4 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","K","Transcription","--"]
["EVM0021933",0.001255966,0.00013874,1.248541407,"up","--","--","--","--","[T]","Signal transduction mechanisms ","Probable disease resistance protein At1g59620 GN=At1g59620 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=3","T","Signal transduction mechanisms","--"]
["EVM0015477",0.004594858,0.000734643,1.289646579,"up","[U]","Intracellular trafficking, secretion, and vesicular transport ","Biological Process: response to cold (GO:0009409);; Biological Process: response to water deprivation (GO:0009414);; Biological Process: response to abscisic acid (GO:0009737);; Biological Process: hyperosmotic salinity response (GO:0042538);; ","K17279|1.11784e-85|fve:101310898|HVA22-like protein a-like; K17279 receptor expression-enhancing protein 5/6 (A)","[U]","Intracellular trafficking, secretion, and vesicular transport ","HVA22-like protein a GN=HVA22A OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","--"]
["EVM0027412",{"v":1.48e-08,"d":"1.48E-08"},{"v":2.95e-10,"d":"2.95E-10"},-2.787631525,"down","--","--","--","--","--","--","Protein FAR1-RELATED SEQUENCE 9 GN=FRS9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","S","Function unknown","--"]
["EVM0021845",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1A-6 GN=R1A-6 OS=Solanum demissum (Wild potato) PE=3 SV=2","T","Signal transduction mechanisms","--"]
["EVM0005925",0.001435248,0.000164806,1.255222109,"up","--","--","--","--","[L]","Replication, recombination and repair ","--","L","Replication, recombination and repair","--"]
["Salvia_newGene_64369",0.006008258,0.001082884,-3.873231793,"down","--","--","--","--","[R]","General function prediction only ","Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial (Precursor) GN=At1g12700 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1","R","General function prediction only","PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Sesamum indicum]"]
["EVM0007012",0.000859097,{"v":8.99e-05,"d":"8.99E-05"},-1.575748334,"up,down","[RTKL]","--","--","--","--","--","G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 (Precursor) GN=At4g03230 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=3","T","Signal transduction mechanisms","--"]
["EVM0017870",{"v":4.33e-15,"d":"4.33E-15"},{"v":2.16e-17,"d":"2.16E-17"},-4.227019327,"down","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0006799",{"v":1.22e-07,"d":"1.22E-07"},{"v":3.56e-09,"d":"3.56E-09"},2.01139798,"up","--","--","Biological Process: single-organism cellular process (GO:0044763);; ","K17479|9.58663e-102|vvi:100247840|uncharacterized LOC100247840; K17479 glutaredoxin domain-containing cysteine-rich protein 1 (A)","[O]","Posttranslational modification, protein turnover, chaperones ","Uncharacterized protein At5g39865 GN=At5g39865 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0018937",0.006008258,0.001082884,-3.873231793,"down","[J]","Translation, ribosomal structure and biogenesis ","Biological Process: RNA methylation (GO:0001510);; Cellular Component: nucleus (GO:0005634);; Biological Process: rRNA processing (GO:0006364);; Molecular Function: methyltransferase activity (GO:0008168);; ","K14857|0|pvu:PHAVU_011G044300g|hypothetical protein; K14857 AdoMet-dependent rRNA methyltransferase SPB1 [EC:2.1.1.-] (A)","[AR]","--","--","A","RNA processing and modification","--"]
["EVM0001972",0.006008258,0.001082884,1.325876238,"up,down","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Molecular Function: monooxygenase activity (GO:0004497);; Molecular Function: iron ion binding (GO:0005506);; Molecular Function: electron carrier activity (GO:0009055);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705);; Molecular Function: heme binding (GO:0020037);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","[QI]","--","Cytochrome P450 CYP72A219 OS=Panax ginseng (Korean ginseng) PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","--"]
["EVM0001616",0.001255966,0.00013874,1.248541407,"up","--","--","Molecular Function: phosphoprotein phosphatase activity (GO:0004721);; ","--","[R]","General function prediction only ","Plant intracellular Ras-group-related LRR protein 6 GN=PIRL6 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","--"]
["EVM0015647",{"v":8e-07,"d":"8.00E-07"},{"v":4.19e-08,"d":"4.19E-08"},-2.320120972,"down","[RTKL]","--","Molecular Function: protein kinase activity (GO:0004672);; Biological Process: primary metabolic process (GO:0044238);; Biological Process: cellular macromolecule metabolic process (GO:0044260);; Molecular Function: organic cyclic compound binding (GO:0097159);; Molecular Function: heterocyclic compound binding (GO:1901363);; ","--","--","--","L-type lectin-domain containing receptor kinase IX.1 (Precursor) GN=LECRK91 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","T","Signal transduction mechanisms","--"]
["EVM0022443",{"v":4.33e-15,"d":"4.33E-15"},{"v":2.16e-17,"d":"2.16E-17"},-4.227019327,"down","--","--","--","--","[K]","Transcription ","Trihelix transcription factor GT-2 GN=GT-2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","K","Transcription","--"]
["EVM0011942",0.006008258,0.001082884,-3.873231793,"down","[O]","Posttranslational modification, protein turnover, chaperones ","Molecular Function: ATP binding (GO:0005524);; Biological Process: multidimensional cell growth (GO:0009825);; Biological Process: plant-type cell wall biogenesis (GO:0009832);; Biological Process: trichome branching (GO:0010091);; Molecular Function: nucleoside-triphosphatase activity (GO:0017111);; Biological Process: cortical microtubule organization (GO:0043622);; ","K07767|0|vvi:100242880|","[O]","Posttranslational modification, protein turnover, chaperones ","Katanin p60 ATPase-containing subunit A1 {ECO:0000255|HAMAP-Rule:MF_03023} GN=At1g80350 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0027175",{"v":9.26e-06,"d":"9.26E-06"},{"v":5.92e-07,"d":"5.92E-07"},2.146060612,"up","[KAD]","--","--","K09422|0|sot:102590821|transcription factor GAMYB-like; K09422 myb proto-oncogene protein, plant (A)","[K]","Transcription ","Transcription factor GAMYB GN=GAM1 OS=Oryza sativa subsp. indica (Rice) PE=2 SV=1","K","Transcription","--"]
["EVM0004936",0.000131541,{"v":1.15e-05,"d":"1.15E-05"},1.780467443,"up","--","--","--","--","--","--","Uncharacterized protein At4g26450 GN=At4g26450 OS=Arabidopsis thaliana (Mouse-ear cress) PE=4 SV=1","S","Function unknown","--"]
["Salvia_newGene_81184",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Disease resistance protein RPP8 GN=MWF20.19 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","T","Signal transduction mechanisms","hypothetical protein MIMGU_mgv1a025953mg [Erythranthe guttata]"]
["EVM0015162",0.002108628,0.000251319,1.378487044,"up","--","--","--","--","[R]","General function prediction only ","--","R","General function prediction only","--"]
["EVM0023081",0.003305481,0.000451621,-1.575748334,"up,down","--","--","--","--","[C]","Energy production and conversion ","Mitochondrial adenine nucleotide transporter ADNT1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","C","Energy production and conversion","--"]
["EVM0010069",{"v":6.97e-07,"d":"6.97E-07"},{"v":3.45e-08,"d":"3.45E-08"},-3.330263518,"down","--","--","Biological Process: fatty acid beta-oxidation (GO:0006635);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: protein import into peroxisome matrix (GO:0016558);; Biological Process: photoperiodism, flowering (GO:0048573);; ","--","--","--","--","S","Function unknown","--"]
["EVM0008338",0.003617439,0.000544916,-1.575748334,"up,down","--","--","Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: auxin-activated signaling pathway (GO:0009734);; Molecular Function: protein dimerization activity (GO:0046983);; ","--","--","--","Auxin response factor 8 GN=K15O15.5 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","K","Transcription","--"]
["EVM0025776",0.006008258,0.001082884,-3.873231793,"down","[V]","Defense mechanisms ","Molecular Function: nucleotide binding (GO:0000166);; Biological Process: transport (GO:0006810);; Biological Process: cellular process (GO:0009987);; Molecular Function: oxidoreductase activity (GO:0016491);; Molecular Function: ATPase activity (GO:0016887);; Biological Process: single-organism metabolic process (GO:0044710);; ","--","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","ABC transporter C family member 8 (Precursor) GN=MXL8.11 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=3","Q","Secondary metabolites biosynthesis, transport and catabolism","--"]
["EVM0002943",{"v":4.88e-07,"d":"4.88E-07"},{"v":2.13e-08,"d":"2.13E-08"},-1.868863205,"down","--","--","--","--","[V]","Defense mechanisms ","Probable carboxylesterase 5 GN=CXE5 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","--"]
["EVM0010407",0.006340017,0.001206158,1.325876238,"up","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0005044",0.002108628,0.000251319,1.378487044,"up","[J]","Translation, ribosomal structure and biogenesis ","--","--","[A]","RNA processing and modification ","--","A","RNA processing and modification","--"]
["EVM0022799",0.006340017,0.001206158,1.325876238,"up","--","--","Molecular Function: alternative oxidase activity (GO:0009916);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: electron transport chain (GO:0022900);; Molecular Function: metal ion binding (GO:0046872);; Cellular Component: respiratory chain (GO:0070469);; ","K17893|1.45495e-42|cic:CICLE_v10003687mg|hypothetical protein; K17893 ubiquinol oxidase [EC:1.10.3.11] (A)","--","--","Ubiquinol oxidase 3, mitochondrial (Precursor) OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","S","Function unknown","--"]
["EVM0003809",{"v":6.97e-07,"d":"6.97E-07"},{"v":3.45e-08,"d":"3.45E-08"},-3.330263518,"down","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0011272",0.006008258,0.001082884,-3.873231793,"down","[U]","Intracellular trafficking, secretion, and vesicular transport ","--","K08517|2.68176e-88|sly:101249333|25.3 kDa vesicle transport protein; K08517 vesicle transport protein SEC22 (A)","[U]","Intracellular trafficking, secretion, and vesicular transport ","25.3 kDa vesicle transport protein GN=SEC22 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","--"]
["EVM0022954",0.001255966,0.00013874,1.248541407,"up","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1A-6 GN=R1A-6 OS=Solanum demissum (Wild potato) PE=3 SV=2","T","Signal transduction mechanisms","--"]
["EVM0021588",0.001255966,0.00013874,1.248541407,"up","--","--","Biological Process: regulation of Rab GTPase activity (GO:0032313);; ","K18469|0|sly:101260951|uncharacterized LOC101260951; K18469 TBC1 domain family member 5 (A)","[U]","Intracellular trafficking, secretion, and vesicular transport ","--","U","Intracellular trafficking, secretion, and vesicular transport","--"]
["Salvia_newGene_90668",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1A-6 GN=R1A-6 OS=Solanum demissum (Wild potato) PE=3 SV=2","T","Signal transduction mechanisms","PREDICTED: putative late blight resistance protein homolog R1B-16 [Sesamum indicum]"]
["EVM0001222",0.006008258,0.001082884,-3.873231793,"down","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: RNA binding (GO:0003723);; Molecular Function: tRNA (guanine-N2-)-methyltransferase activity (GO:0004809);; Biological Process: tRNA processing (GO:0008033);; ","K00555|0|mdm:103404653|probable tRNA (guanine(26)-N(2))-dimethyltransferase 2; K00555 tRNA (guanine26-N2/guanine27-N2)-dimethyltransferase [EC:2.1.1.215 2.1.1.216] (A)","[J]","Translation, ribosomal structure and biogenesis ","Probable tRNA (guanine(26)-N(2))-dimethyltransferase 2 GN=At3g02320 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=3","J","Translation, ribosomal structure and biogenesis","--"]
["EVM0028085",0.0048876,0.00083828,1.08721942,"up","--","--","--","--","[R]","General function prediction only ","Aluminum-activated malate transporter 12 GN=T6K21.150 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","P","Inorganic ion transport and metabolism","--"]
["EVM0014316",0.006340017,0.001206158,1.325876238,"up","[R]","General function prediction only ","--","--","[R]","General function prediction only ","Eukaryotic translation initiation factor 3 subunit I {ECO:0000255|HAMAP-Rule:MF_03008} GN=TIF3I1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","R","General function prediction only","--"]
["EVM0023615",0.001435248,0.000164806,1.255222109,"up","[S]","Function unknown ","--","--","--","--","Probable disease resistance protein At4g33300 GN=At4g33300 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=3","R","General function prediction only","--"]
["EVM0020844",{"v":1.77e-07,"d":"1.77E-07"},{"v":6.8e-09,"d":"6.80E-09"},1.982657973,"up","--","--","--","--","--","--","Uncharacterized protein At1g04910 GN=At1g04910 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","--"]
["EVM0025078",0.00084516,{"v":8.6e-05,"d":"8.60E-05"},-1.53399087,"down","--","--","--","K17604|0|tcc:TCM_015107|FAR1-related sequence 5 isoform 1 (A)","--","--","Protein FAR1-RELATED SEQUENCE 5 GN=FRS5 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","--"]
["EVM0006606",{"v":9.26e-06,"d":"9.26E-06"},{"v":5.92e-07,"d":"5.92E-07"},2.146060612,"up","--","--","Molecular Function: methyltransferase activity (GO:0008168);; Biological Process: methylation (GO:0032259);; ","--","--","--","--","S","Function unknown","--"]
["EVM0010325",0.004594858,0.000734643,1.289646579,"up","[R]","General function prediction only ","Molecular Function: structural constituent of ribosome (GO:0003735);; Biological Process: translation (GO:0006412);; Biological Process: proteolysis (GO:0006508);; Biological Process: sister chromatid cohesion (GO:0007062);; Biological Process: synapsis (GO:0007129);; Biological Process: reciprocal meiotic recombination (GO:0007131);; Molecular Function: peptidase activity (GO:0008233);; Biological Process: organ morphogenesis (GO:0009887);; Biological Process: tissue development (GO:0009888);; Biological Process: response to gamma radiation (GO:0010332);; Biological Process: positive regulation of organelle organization (GO:0010638);; Cellular Component: large ribosomal subunit (GO:0015934);; Biological Process: regulation of telomere maintenance (GO:0032204);; Biological Process: multicellular organism reproduction (GO:0032504);; Biological Process: meiotic DNA double-strand break formation (GO:0042138);; Biological Process: telomere maintenance in response to DNA damage (GO:0043247);; Biological Process: meiotic chromosome segregation (GO:0045132);; ","--","[OR]","--","--","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0022050",{"v":4.33e-15,"d":"4.33E-15"},{"v":2.16e-17,"d":"2.16E-17"},-4.227019327,"down","--","--","--","--","[B]","Chromatin structure and dynamics ","--","B","Chromatin structure and dynamics","--"]
["EVM0023192",{"v":6.97e-07,"d":"6.97E-07"},{"v":3.45e-08,"d":"3.45E-08"},-3.330263518,"down","--","--","--","K03026|3.58813e-85|sly:101254492|DNA-directed RNA polymerase III subunit RPC4; K03026 DNA-directed RNA polymerase III subunit RPC4 (A)","[K]","Transcription ","--","K","Transcription","--"]
["EVM0016010",0.006340017,0.001203061,1.325876238,"up","--","--","Biological Process: metabolic process (GO:0008152);; Molecular Function: hydrolase activity, acting on glycosyl bonds (GO:0016798);; ","K07759|0|sly:101251564|poly(ADP-ribose) glycohydrolase 1-like; K07759 poly(ADP-ribose) glycohydrolase [EC:3.2.1.143] (A)","[T]","Signal transduction mechanisms ","Poly(ADP-ribose) glycohydrolase 1 GN=F20M17.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","T","Signal transduction mechanisms","--"]
["EVM0015603",0.006340017,0.001203061,1.325876238,"up","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","--","--","[QI]","--","Cytochrome P450 CYP749A22 OS=Panax ginseng (Korean ginseng) PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","--"]
["EVM0010024",0.006340017,0.001206158,1.325876238,"up","--","--","Biological Process: cytokinesis by cell plate formation (GO:0000911);; Cellular Component: extracellular region (GO:0005576);; Cellular Component: plant-type cell wall (GO:0009505);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: plant-type cell wall organization (GO:0009664);; Biological Process: cell wall modification (GO:0042545);; Biological Process: response to other organism (GO:0051707);; ","--","--","--","Osmotin-like protein (Precursor) OS=Solanum lycopersicum (Tomato) PE=1 SV=1","R","General function prediction only","--"]
["EVM0018985",0.006340017,0.001216399,1.027296299,"up","[S]","Function unknown ","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: epidermis development (GO:0008544);; Biological Process: embryo sac development (GO:0009553);; Biological Process: embryo development (GO:0009790);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: oxidoreductase activity (GO:0016491);; ","--","--","--","LRR receptor-like serine/threonine-protein kinase GSO1 (Precursor) GN=GSO1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","T","Signal transduction mechanisms","--"]
["EVM0002982",0.006340017,0.001203061,1.325876238,"up","--","--","--","--","[R]","General function prediction only ","Pentatricopeptide repeat-containing protein At4g39530 GN=PCMP-E52 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1","R","General function prediction only","--"]
["EVM0025256",{"v":6.97e-07,"d":"6.97E-07"},{"v":3.45e-08,"d":"3.45E-08"},-3.330263518,"down","[J]","Translation, ribosomal structure and biogenesis ","--","K14565|0|vvi:100248675|probable nucleolar protein 5-2; K14565 nucleolar protein 58 (A)","[AJ]","--","Probable nucleolar protein 5-1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","J","Translation, ribosomal structure and biogenesis","--"]
["Salvia_newGene_53276",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1B-14 GN=R1B-14 OS=Solanum demissum (Wild potato) PE=3 SV=1","T","Signal transduction mechanisms","hypothetical protein MIMGU_mgv1a001232mg [Erythranthe guttata]"]
["EVM0009918",0.000870664,{"v":9.36e-05,"d":"9.36E-05"},-1.307666533,"down","--","--","--","K13457|4.06122e-59|sot:102595981|putative disease resistance protein At1g50180-like (A)","[T]","Signal transduction mechanisms ","Putative disease resistance protein At1g50180 GN=At1g50180 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=2","T","Signal transduction mechanisms","--"]
["EVM0002223",0.004594858,0.000734643,1.289646579,"up","[KAD]","--","--","K09422|0|vvi:100268025|snRNA-activating protein complex subunit 4; K09422 myb proto-oncogene protein, plant (A)","[K]","Transcription ","Myb-related protein 3R-1 GN=MYB3R-1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","K","Transcription","--"]
["EVM0012758",0.000870664,{"v":9.36e-05,"d":"9.36E-05"},-1.307666533,"down","--","--","--","K13495|1.08131e-133|pxb:103953184|zeatin O-glucosyltransferase-like; K13495 cis-zeatin O-glucosyltransferase [EC:2.4.1.215] (A)","[GC]","--","Zeatin O-xylosyltransferase GN=ZOX1 OS=Phaseolus vulgaris (Kidney bean) PE=2 SV=1","G","Carbohydrate transport and metabolism","--"]
["EVM0009272",0.006340017,0.001206158,1.325876238,"up","--","--","--","--","--","--","--","S","Function unknown","--"]
["Salvia_newGene_38855",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1C-3 GN=R1C-3 OS=Solanum demissum (Wild potato) PE=3 SV=1","T","Signal transduction mechanisms","hypothetical protein MIMGU_mgv1a001110mg [Erythranthe guttata]"]
["EVM0009318",0.006008258,0.001082884,-3.873231793,"down","--","--","--","--","[R]","General function prediction only ","Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial (Precursor) GN=At1g12700 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1","R","General function prediction only","--"]
["EVM0003059",{"v":6.97e-07,"d":"6.97E-07"},{"v":3.45e-08,"d":"3.45E-08"},-3.330263518,"down","--","--","--","--","--","--","WAT1-related protein At1g43650 GN=At1g43650 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","--"]
["EVM0023390",0.004969279,0.000866735,-2.685422322,"down","[RTKL]","--","Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","Probable inactive receptor kinase At4g23740 (Precursor) GN=At4g23740 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","T","Signal transduction mechanisms","--"]
["EVM0007641",0.000870664,{"v":9.36e-05,"d":"9.36E-05"},-1.307666533,"down","[T]","Signal transduction mechanisms ","Biological Process: cellular process (GO:0009987);; ","K12129|0|tcc:TCM_022066|Pseudo-response regulator 7, putative isoform 4; K12129 pseudo-response regulator 7 (A)","[K]","Transcription ","Two-component response regulator-like APRR7 GN=APRR7 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","K","Transcription","--"]
["EVM0018642",{"v":8.08e-06,"d":"8.08E-06"},{"v":4.7e-07,"d":"4.70E-07"},1.894718978,"up","--","--","--","--","[GC]","--","UDP-glycosyltransferase 86A1 GN=UGT86A1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","G","Carbohydrate transport and metabolism","--"]
["EVM0003935",0.006008258,0.001082884,-3.873231793,"down","--","--","--","--","[R]","General function prediction only ","Pentatricopeptide repeat-containing protein At1g77360, mitochondrial (Precursor) GN=At1g77360 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","R","General function prediction only","--"]
["EVM0023407",0.00280583,0.000350729,1.891294437,"up","--","--","--","--","--","--","Squamosa promoter-binding-like protein 7 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2","K","Transcription","--"]
["EVM0027242",0.006008258,0.001082884,-3.873231793,"down","[R]","General function prediction only ","Molecular Function: nucleotide binding (GO:0000166);; Molecular Function: nucleic acid binding (GO:0003676);; Cellular Component: mitochondrion (GO:0005739);; Molecular Function: zinc ion binding (GO:0008270);; ","K12896|1.02494e-91|sly:101266446|serine/arginine-rich splicing factor RS2Z33; K12896 splicing factor, arginine/serine-rich 7 (A)","[A]","RNA processing and modification ","Serine/arginine-rich splicing factor RS2Z33 GN=F3G5.13 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","A","RNA processing and modification","--"]
["EVM0025628",{"v":1.48e-08,"d":"1.48E-08"},{"v":2.95e-10,"d":"2.95E-10"},-2.787631525,"down","--","--","Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Biological Process: chromatin assembly or disassembly (GO:0006333);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: response to abscisic acid (GO:0009737);; Biological Process: embryo development ending in seed dormancy (GO:0009793);; Biological Process: seed germination (GO:0009845);; Biological Process: regulation of flower development (GO:0009909);; Biological Process: meristem structural organization (GO:0009933);; Biological Process: polarity specification of adaxial/abaxial axis (GO:0009944);; Biological Process: thylakoid membrane organization (GO:0010027);; Biological Process: specification of floral organ identity (GO:0010093);; Biological Process: stomatal complex morphogenesis (GO:0010103);; Biological Process: abaxial cell fate specification (GO:0010158);; Biological Process: specification of organ position (GO:0010159);; Biological Process: seed dormancy process (GO:0010162);; Biological Process: vegetative to reproductive phase transition of meristem (GO:0010228);; Biological Process: inflorescence meristem growth (GO:0010450);; Biological Process: iron-sulfur cluster assembly (GO:0016226);; Biological Process: ovule development (GO:0048481);; ","--","--","--","Axial regulator YABBY 1 GN=F4L23.30 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","R","General function prediction only","--"]
["EVM0026612",0.003617439,0.000544916,-1.575748334,"up,down","[K]","Transcription ","Molecular Function: DNA binding (GO:0003677);; ","--","[K]","Transcription ","Homeobox-leucine zipper protein ATHB-7 GN=ATHB-7 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","K","Transcription","--"]
["EVM0012444",{"v":4.33e-15,"d":"4.33E-15"},{"v":2.16e-17,"d":"2.16E-17"},-4.227019327,"down","[O]","Posttranslational modification, protein turnover, chaperones ","Molecular Function: electron carrier activity (GO:0009055);; Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);; Biological Process: cell redox homeostasis (GO:0045454);; ","--","[O]","Posttranslational modification, protein turnover, chaperones ","Monothiol glutaredoxin-S17 GN=GRXS17 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","--"]
["Salvia_newGene_57657",0.000859097,{"v":8.99e-05,"d":"8.99E-05"},1.605568787,"up","--","--","--","K04125|1.18372e-30|cit:102617833|leucoanthocyanidin dioxygenase-like; K04125 gibberellin 2-oxidase [EC:1.14.11.13] (A)","[R]","General function prediction only ","Endonuclease OS=Nicotiana tabacum (Common tobacco) PE=2 SV=1","R","General function prediction only","gag/pol protein [Bryonia dioica]"]
["EVM0012905",{"v":4.69e-08,"d":"4.69E-08"},{"v":1.23e-09,"d":"1.23E-09"},2.255629445,"up","--","--","--","--","[R]","General function prediction only ","--","R","General function prediction only","--"]
["EVM0000414",0.000870664,{"v":9.36e-05,"d":"9.36E-05"},-1.307666533,"down","[P]","Inorganic ion transport and metabolism ","Molecular Function: calcium-transporting ATPase activity (GO:0005388);; Molecular Function: ATP binding (GO:0005524);; Biological Process: ATP catabolic process (GO:0006200);; Biological Process: cation transport (GO:0006812);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: metal ion binding (GO:0046872);; ","K14950|0|sly:101249766|probable manganese-transporting ATPase PDR2; K14950 cation-transporting ATPase 13A1 [EC:3.6.3.-] (A)","[P]","Inorganic ion transport and metabolism ","Probable manganese-transporting ATPase PDR2 GN=MQM1.11 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","P","Inorganic ion transport and metabolism","--"]
["EVM0012862",0.001435248,0.000164806,1.255222109,"up","[L]","Replication, recombination and repair ","--","K10706|0|sot:102601107|uncharacterized LOC102601107; K10706 senataxin [EC:3.6.4.-] (A)","[A]","RNA processing and modification ","Probable helicase MAGATAMA 3 GN=MAA3 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","A","RNA processing and modification","--"]
["EVM0026208",{"v":4.69e-08,"d":"4.69E-08"},{"v":1.23e-09,"d":"1.23E-09"},2.255629445,"up","--","--","Biological Process: maltose metabolic process (GO:0000023);; Molecular Function: mRNA binding (GO:0003729);; Biological Process: mRNA processing (GO:0006397);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: starch biosynthetic process (GO:0019252);; ","--","[R]","General function prediction only ","Pentatricopeptide repeat-containing protein At3g09650, chloroplastic (Precursor) GN=F11F8_24 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","--"]
["EVM0002806",0.004594858,0.000734643,1.289646579,"up","--","--","--","K07466|1.13085e-25|mtr:MTR_8g062030|Replication factor A protein; K07466 replication factor A1 (A)","[L]","Replication, recombination and repair ","--","L","Replication, recombination and repair","--"]
["EVM0001568",{"v":1.77e-07,"d":"1.77E-07"},{"v":6.8e-09,"d":"6.80E-09"},1.982657973,"up","--","--","--","--","--","--","--","R","General function prediction only","--"]
["EVM0010218",0.006008258,0.001082884,-3.873231793,"down","--","--","Molecular Function: calcium ion binding (GO:0005509);; Cellular Component: integral component of membrane (GO:0016021);; ","K17800|0|rcu:RCOM_1076740|leucine zipper-ef-hand containing transmembrane protein, putative; K17800 LETM1 and EF-hand domain-containing protein 1, mitochondrial (A)","[S]","Function unknown ","--","S","Function unknown","--"]
["EVM0002733",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1A-6 GN=R1A-6 OS=Solanum demissum (Wild potato) PE=3 SV=2","T","Signal transduction mechanisms","--"]
["EVM0007273",0.006340017,0.001206158,1.325876238,"up","--","--","Molecular Function: carboxylic ester hydrolase activity (GO:0052689);; ","--","[V]","Defense mechanisms ","Probable carboxylesterase 120 GN=CXE20 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","V","Defense mechanisms","--"]
["EVM0021831",0.002108628,0.000251319,1.378487044,"up","[G]","Carbohydrate transport and metabolism ","Molecular Function: xylan 1,4-beta-xylosidase activity (GO:0009044);; Cellular Component: plant-type cell wall (GO:0009505);; Cellular Component: chloroplast (GO:0009507);; Biological Process: xyloglucan metabolic process (GO:0010411);; Molecular Function: carbohydrate binding (GO:0030246);; Molecular Function: maltose alpha-glucosidase activity (GO:0032450);; Biological Process: xylan catabolic process (GO:0045493);; Molecular Function: alpha-L-arabinofuranosidase activity (GO:0046556);; Biological Process: response to cadmium ion (GO:0046686);; Cellular Component: apoplast (GO:0048046);; ","K15925|0|rcu:RCOM_0030540|alpha-glucosidase, putative (EC:3.2.1.20); K15925 alpha-D-xyloside xylohydrolase [EC:3.2.1.177] (A)","[G]","Carbohydrate transport and metabolism ","Alpha-xylosidase 1 (Precursor) GN=At1g68560 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","G","Carbohydrate transport and metabolism","--"]
["EVM0011987",0.002166007,0.000264454,1.373328374,"up","--","--","Molecular Function: transferase activity, transferring glycosyl groups (GO:0016757);; ","--","[GC]","--","Putative UDP-glucose flavonoid 3-O-glucosyltransferase 3 {ECO:0000250|UniProtKB:Q2V6K0} OS=Fragaria ananassa (Strawberry) PE=2 SV=1","G","Carbohydrate transport and metabolism","--"]
["EVM0027112",0.003305481,0.000451621,-1.575748334,"up,down","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0002474",0.006008258,0.001082884,-3.873231793,"down","[R]","General function prediction only ","Cellular Component: plasma membrane (GO:0005886);; Cellular Component: plasmodesma (GO:0009506);; Molecular Function: FMN binding (GO:0010181);; Molecular Function: oxidoreductase activity (GO:0016491);; Biological Process: negative regulation of transcription, DNA-templated (GO:0045892);; Biological Process: oxidation-reduction process (GO:0055114);; ","K03809|1.77818e-85|gmx:100499870|uncharacterized LOC100499870; K03809 Trp repressor binding protein (A)","[R]","General function prediction only ","Probable NAD(P)H dehydrogenase (quinone) FQR1-like 1 {ECO:0000305} OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","--"]
["EVM0022712",0.00280583,0.000350729,1.891294437,"up","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0000873",0.001255966,0.00013874,1.248541407,"up","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1A-6 GN=R1A-6 OS=Solanum demissum (Wild potato) PE=3 SV=2","T","Signal transduction mechanisms","--"]
["EVM0005629",{"v":6.97e-07,"d":"6.97E-07"},{"v":3.45e-08,"d":"3.45E-08"},-3.330263518,"down","--","--","Molecular Function: signal transducer activity (GO:0004871);; Biological Process: signal transduction (GO:0007165);; Biological Process: response to light stimulus (GO:0009416);; ","--","--","--","BTB/POZ domain-containing protein At1g30440 GN=At1g30440 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","R","General function prediction only","--"]
["EVM0015419",0.001435248,0.000166889,-1.36648412,"down","[O]","Posttranslational modification, protein turnover, chaperones ","Molecular Function: nucleotide binding (GO:0000166);; ","--","[O]","Posttranslational modification, protein turnover, chaperones ","26S protease regulatory subunit 6B homolog GN=MCK7.16 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0020162",{"v":8e-07,"d":"8.00E-07"},{"v":4.19e-08,"d":"4.19E-08"},-2.320120972,"down","[RTKL]","--","Molecular Function: kinase activity (GO:0016301);; Biological Process: primary metabolic process (GO:0044238);; Biological Process: cellular macromolecule metabolic process (GO:0044260);; Molecular Function: organic cyclic compound binding (GO:0097159);; Molecular Function: heterocyclic compound binding (GO:1901363);; ","--","--","--","L-type lectin-domain containing receptor kinase IX.1 (Precursor) GN=LECRK91 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","T","Signal transduction mechanisms","--"]
["EVM0006308",{"v":9.26e-06,"d":"9.26E-06"},{"v":5.92e-07,"d":"5.92E-07"},2.146060612,"up","--","--","--","--","--","--","Transcription factor PCF7 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2","K","Transcription","--"]
["EVM0018885",0.006008258,0.001082884,-3.873231793,"down","--","--","--","--","[R]","General function prediction only ","Pentatricopeptide repeat-containing protein At5g67570, chloroplastic (Precursor) GN=K9I9.14 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","R","General function prediction only","--"]
["EVM0026557",0.006340017,0.001203061,1.325876238,"up","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Molecular Function: copper ion binding (GO:0005507);; Biological Process: lignin catabolic process (GO:0046274);; Cellular Component: apoplast (GO:0048046);; Molecular Function: hydroquinone:oxygen oxidoreductase activity (GO:0052716);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Laccase-12 (Precursor) GN=LAC12 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","--"]
["EVM0004419",{"v":4.69e-08,"d":"4.69E-08"},{"v":1.23e-09,"d":"1.23E-09"},2.255629445,"up","[RTKL]","--","Molecular Function: nucleotide binding (GO:0000166);; Molecular Function: protein kinase activity (GO:0004672);; Cellular Component: membrane (GO:0016020);; Biological Process: phosphorylation (GO:0016310);; Molecular Function: oxidoreductase activity (GO:0016491);; ","--","--","--","Tyrosine-sulfated glycopeptide receptor 1 GN=PSYR1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","T","Signal transduction mechanisms","--"]
["EVM0026905",{"v":4.69e-08,"d":"4.69E-08"},{"v":1.23e-09,"d":"1.23E-09"},2.255629445,"up","--","--","--","--","[O]","Posttranslational modification, protein turnover, chaperones ","E3 ubiquitin ligase BIG BROTHER-related GN=BBR OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","--"]
["EVM0004183",0.006340017,0.001203061,1.322619076,"up","--","--","Molecular Function: peroxidase activity (GO:0004601);; Biological Process: response to oxidative stress (GO:0006979);; Molecular Function: heme binding (GO:0020037);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00430|1.15492e-171|sot:102580868|peroxidase 47-like; K00430 peroxidase [EC:1.11.1.7] (A)","--","--","Peroxidase 47 (Precursor) GN=F17M5.180 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","G","Carbohydrate transport and metabolism","--"]
["EVM0011139",0.0048876,0.00083828,1.08721942,"up","--","--","Molecular Function: ubiquitin-protein transferase activity (GO:0004842);; Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511);; Biological Process: multicellular organismal development (GO:0007275);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: protein ubiquitination (GO:0016567);; ","K04506|2.14164e-172|rcu:RCOM_0446280|Ubiquitin ligase SINAT2, putative; K04506 E3 ubiquitin-protein ligase SIAH1 [EC:6.3.2.19] (A)","[R]","General function prediction only ","E3 ubiquitin-protein ligase SINAT2 GN=SINAT2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0014919",0.003617439,0.000544916,-1.575748334,"up,down","[E]","Amino acid transport and metabolism ","Molecular Function: L-aspartate:2-oxoglutarate aminotransferase activity (GO:0004069);; Biological Process: lysine biosynthetic process via diaminopimelate (GO:0009089);; Molecular Function: L,L-diaminopimelate aminotransferase activity (GO:0010285);; Molecular Function: pyridoxal phosphate binding (GO:0030170);; Molecular Function: L-phenylalanine:2-oxoglutarate aminotransferase activity (GO:0080130);; ","K10206|0|pop:POPTR_0007s14030g|POPTRDRAFT_764848; aminotransferase class 1 and 2 family protein; K10206 LL-diaminopimelate aminotransferase [EC:2.6.1.83] (A)","[E]","Amino acid transport and metabolism ","Aminotransferase ALD1 GN=ALD1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","E","Amino acid transport and metabolism","--"]
["EVM0009066",0.004969279,0.000866735,-2.685422322,"down","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0016240",0.001435248,0.000164806,1.255222109,"up","[KL]","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: chromatin binding (GO:0003682);; Molecular Function: helicase activity (GO:0004386);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytosol (GO:0005829);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: organ boundary specification between lateral organs and the meristem (GO:0010199);; Biological Process: regulation of gene expression, epigenetic (GO:0040029);; Biological Process: ATP-dependent chromatin remodeling (GO:0043044);; ","K11647|0|vvi:100249945|ATP-dependent helicase BRM; K11647 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:3.6.4.-] (A)","[BK]","--","ATP-dependent helicase BRM OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","K","Transcription","--"]
["Salvia_newGene_52758",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1B-17 GN=R1B-17 OS=Solanum demissum (Wild potato) PE=3 SV=1","T","Signal transduction mechanisms","hypothetical protein MIMGU_mgv1a001134mg [Erythranthe guttata]"]
["EVM0002134",{"v":4.33e-15,"d":"4.33E-15"},{"v":3.83e-17,"d":"3.83E-17"},3.394700436,"up","[L]","Replication, recombination and repair ","Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleus (GO:0005634);; Biological Process: DNA replication (GO:0006260);; ","K07466|0|sot:102589752|replication protein A 70 kDa DNA-binding subunit B-like; K07466 replication factor A1 (A)","[L]","Replication, recombination and repair ","Replication protein A 70 kDa DNA-binding subunit B GN=F13G24.220 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1","L","Replication, recombination and repair","--"]
["EVM0012773",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1A-6 GN=R1A-6 OS=Solanum demissum (Wild potato) PE=3 SV=2","T","Signal transduction mechanisms","--"]
["EVM0016555",{"v":4.33e-15,"d":"4.33E-15"},{"v":2.16e-17,"d":"2.16E-17"},-4.227019327,"down","--","--","Molecular Function: transferase activity, transferring glycosyl groups (GO:0016757);; ","--","[R]","General function prediction only ","Pentatricopeptide repeat-containing protein At1g05670, mitochondrial (Precursor) GN=At1g05670 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","--"]
["EVM0006514",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Late blight resistance protein R1-A GN=R1A OS=Solanum demissum (Wild potato) PE=3 SV=1","T","Signal transduction mechanisms","--"]
["EVM0017514",0.006008258,0.001082884,-3.873231793,"down","--","--","--","--","[R]","General function prediction only ","Pentatricopeptide repeat-containing protein At3g46610 GN=At3g46610 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","--"]
["Salvia_newGene_54114",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1C-3 GN=R1C-3 OS=Solanum demissum (Wild potato) PE=3 SV=1","T","Signal transduction mechanisms","PREDICTED: putative late blight resistance protein homolog R1B-16 [Sesamum indicum]"]
["EVM0005843",{"v":4.33e-15,"d":"4.33E-15"},{"v":3.83e-17,"d":"3.83E-17"},3.394700436,"up","[S]","Function unknown ","Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleus (GO:0005634);; Biological Process: protein N-linked glycosylation (GO:0006487);; Biological Process: protein targeting to vacuole (GO:0006623);; Biological Process: membrane fusion (GO:0006944);; Biological Process: systemic acquired resistance (GO:0009627);; Biological Process: salicylic acid biosynthetic process (GO:0009697);; Biological Process: brassinosteroid mediated signaling pathway (GO:0009742);; Biological Process: regulation of DNA-templated transcription, elongation (GO:0032784);; Biological Process: Golgi vesicle transport (GO:0048193);; ","K17498|0|pper:PRUPE_ppa004973mg|hypothetical protein; K17498 transcription factor SPN1 (A)","[S]","Function unknown ","--","S","Function unknown","--"]
["EVM0017964",0.004969279,0.000866735,-2.685422322,"down","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0017607",{"v":4.33e-15,"d":"4.33E-15"},{"v":3.83e-17,"d":"3.83E-17"},3.394700436,"up","--","--","--","--","--","--","F-box protein SKIP23 GN=SKIP23 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","--","--","--"]
["EVM0011061",0.000859097,{"v":8.99e-05,"d":"8.99E-05"},1.605568787,"up","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0005186",0.001435248,0.000164806,1.255222109,"up","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0012088",{"v":4.33e-15,"d":"4.33E-15"},{"v":3.83e-17,"d":"3.83E-17"},3.394700436,"up","--","--","--","--","[IU]","--","Phospholipase SGR2 GN=SGR2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","--"]
["EVM0012101",{"v":4.69e-08,"d":"4.69E-08"},{"v":1.23e-09,"d":"1.23E-09"},2.255629445,"up","--","--","--","K17925|0|sot:102591656|uncharacterized LOC102591656; K17925 sorting nexin-13 (A)","[ZUD]","--","--","Z","Cytoskeleton","--"]
["EVM0022547",0.000859097,{"v":8.99e-05,"d":"8.99E-05"},1.605568787,"up","[E]","Amino acid transport and metabolism ","Molecular Function: oxidoreductase activity, acting on CH-OH group of donors (GO:0016614);; Biological Process: single-organism metabolic process (GO:0044710);; ","--","[R]","General function prediction only ","Protein HOTHEAD (Precursor) GN=F3N23.17 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","E","Amino acid transport and metabolism","--"]
["EVM0005827",{"v":9.26e-06,"d":"9.26E-06"},{"v":5.92e-07,"d":"5.92E-07"},2.146060612,"up","--","--","--","--","[GC]","--","UDP-glycosyltransferase 86A1 GN=UGT86A1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","G","Carbohydrate transport and metabolism","--"]
["EVM0012273",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1A-6 GN=R1A-6 OS=Solanum demissum (Wild potato) PE=3 SV=2","T","Signal transduction mechanisms","--"]
["EVM0019153",{"v":4.33e-15,"d":"4.33E-15"},{"v":2.16e-17,"d":"2.16E-17"},-4.227019327,"up,down","[KL]","--","--","--","[BK]","--","Chromatin structure-remodeling complex protein SYD GN=SYD OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","K","Transcription","--"]
["EVM0009779",0.006705101,0.001353126,-1.606064416,"down","--","--","--","--","--","--","Uncharacterized protein At5g41620 GN=At5g41620 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","S","Function unknown","--"]
["EVM0004901",0.002108628,0.000251319,1.378487044,"up","--","--","Biological Process: microtubule cytoskeleton organization (GO:0000226);; Biological Process: double-strand break repair via homologous recombination (GO:0000724);; Biological Process: cytokinesis by cell plate formation (GO:0000911);; Molecular Function: DNA binding (GO:0003677);; Molecular Function: NAD+ ADP-ribosyltransferase activity (GO:0003950);; Cellular Component: nucleus (GO:0005634);; Biological Process: DNA-dependent DNA replication (GO:0006261);; Biological Process: regulation of DNA replication (GO:0006275);; Biological Process: DNA methylation (GO:0006306);; Biological Process: methylation-dependent chromatin silencing (GO:0006346);; Biological Process: protein ADP-ribosylation (GO:0006471);; Biological Process: mitotic nuclear division (GO:0007067);; Biological Process: synapsis (GO:0007129);; Biological Process: reciprocal meiotic recombination (GO:0007131);; Biological Process: cell-cell signaling (GO:0007267);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: pollen development (GO:0009555);; Biological Process: virus induced gene silencing (GO:0009616);; Biological Process: determination of bilateral symmetry (GO:0009855);; Biological Process: regulation of flower development (GO:0009909);; Biological Process: meristem initiation (GO:0010014);; Biological Process: meristem maintenance (GO:0010073);; Biological Process: response to ionizing radiation (GO:0010212);; Biological Process: production of ta-siRNAs involved in RNA interference (GO:0010267);; Biological Process: regulation of cell cycle process (GO:0010564);; Biological Process: somatic cell DNA recombination (GO:0016444);; Biological Process: production of miRNAs involved in gene silencing by miRNA (GO:0035196);; Biological Process: post-translational protein modification (GO:0043687);; Biological Process: positive regulation of transcription, DNA-templated (GO:0045893);; Biological Process: floral organ formation (GO:0048449);; Molecular Function: NAD binding (GO:0051287);; Biological Process: histone H3-K9 methylation (GO:0051567);; ","K10798|0|cit:102621976|poly [ADP-ribose] polymerase 1-like; K10798 poly [ADP-ribose] polymerase [EC:2.4.2.30] (A)","[KLO]","--","Poly [ADP-ribose] polymerase 1 GN=PARP1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","L","Replication, recombination and repair","--"]
["EVM0008225",0.006340017,0.001203061,1.325876238,"up","--","--","Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Biological Process: carbohydrate metabolic process (GO:0005975);; ","--","--","--","--","R","General function prediction only","--"]
["Salvia_newGene_52023",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1A-6 GN=R1A-6 OS=Solanum demissum (Wild potato) PE=3 SV=2","T","Signal transduction mechanisms","PREDICTED: putative late blight resistance protein homolog R1B-16 [Sesamum indicum]"]
["EVM0005756",0.004969279,0.000866735,-2.685422322,"down","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","--","K04123|0|fve:101291058|ent-kaurenoic acid oxidase 1-like; K04123 ent-kaurenoic acid hydroxylase [EC:1.14.13.79] (A)","[QI]","--","Ent-kaurenoic acid oxidase 2 GN=T32F6.4 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","Q","Secondary metabolites biosynthesis, transport and catabolism","--"]
["EVM0019539",{"v":9.26e-06,"d":"9.26E-06"},{"v":5.92e-07,"d":"5.92E-07"},2.146060612,"up","--","--","--","--","--","--","Transcription factor TCP24 GN=TCP24 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","K","Transcription","--"]
["Salvia_newGene_21991",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1A-6 GN=R1A-6 OS=Solanum demissum (Wild potato) PE=3 SV=2","T","Signal transduction mechanisms","hypothetical protein MIMGU_mgv1a024130mg [Erythranthe guttata]"]
["EVM0010643",0.0048876,0.00083828,1.08721942,"up","--","--","--","--","[R]","General function prediction only ","Pentatricopeptide repeat-containing protein At1g05750, chloroplastic (Precursor) GN=T20M3.1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","--"]
["EVM0023651",0.002108628,0.000251319,1.378487044,"up","[H]","Coenzyme transport and metabolism ","Molecular Function: oxygen-dependent protoporphyrinogen oxidase activity (GO:0004729);; Biological Process: porphyrin-containing compound biosynthetic process (GO:0006779);; Cellular Component: chloroplast thylakoid (GO:0009534);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00231|0|vvi:100243415|protoporphyrinogen oxidase 1, chloroplastic; K00231 oxygen-dependent protoporphyrinogen oxidase [EC:1.3.3.4] (A)","[H]","Coenzyme transport and metabolism ","Protoporphyrinogen oxidase, chloroplastic (Precursor) GN=PPXI OS=Nicotiana tabacum (Common tobacco) PE=2 SV=1","H","Coenzyme transport and metabolism","--"]
["EVM0017451",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1B-8 GN=R1B-8 OS=Solanum demissum (Wild potato) PE=5 SV=1","T","Signal transduction mechanisms","--"]
["EVM0006941",{"v":4.33e-15,"d":"4.33E-15"},{"v":2.16e-17,"d":"2.16E-17"},-4.227019327,"down","[K]","Transcription ","Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: protein dimerization activity (GO:0046983);; ","--","[K]","Transcription ","MADS-box protein SOC1 GN=F17K2.19 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","K","Transcription","--"]
["EVM0004099",0.002108628,0.000251319,1.378487044,"up","--","--","Molecular Function: hydrolase activity (GO:0016787);; ","--","--","--","PLASMODESMATA CALLOSE-BINDING PROTEIN 3 (Precursor) GN=PDCB3 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","R","General function prediction only","--"]
["EVM0001727",{"v":6.97e-07,"d":"6.97E-07"},{"v":3.45e-08,"d":"3.45E-08"},-3.330263518,"down","[O]","Posttranslational modification, protein turnover, chaperones ","--","K13993|7.38401e-79|sot:102586713|uncharacterized LOC102586713; K13993 HSP20 family protein (A)","[O]","Posttranslational modification, protein turnover, chaperones ","17.6 kDa class II heat shock protein GN=HSP17.6 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0024077",0.006340017,0.001203061,1.325876238,"up","[O]","Posttranslational modification, protein turnover, chaperones ","Cellular Component: endoplasmic reticulum lumen (GO:0005788);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein folding (GO:0006457);; Biological Process: ER-nucleus signaling pathway (GO:0006984);; Biological Process: response to heat (GO:0009408);; Biological Process: systemic acquired resistance (GO:0009627);; Biological Process: response to high light intensity (GO:0009644);; Molecular Function: heat shock protein binding (GO:0031072);; Biological Process: response to endoplasmic reticulum stress (GO:0034976);; Biological Process: response to hydrogen peroxide (GO:0042542);; Molecular Function: unfolded protein binding (GO:0051082);; Biological Process: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response (GO:0052033);; ","K09517|0|cit:102629298|dnaJ homolog subfamily B member 11-like; K09517 DnaJ homolog subfamily B member 11 (A)","[O]","Posttranslational modification, protein turnover, chaperones ","DnaJ protein ERDJ3B (Precursor) GN=F26K9.30 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0005569",0.000859097,{"v":8.99e-05,"d":"8.99E-05"},1.605568787,"up","--","--","Molecular Function: binding (GO:0005488);; Molecular Function: oxidoreductase activity (GO:0016491);; ","K15639|9.72325e-28|cit:102613265|cytochrome P450 734A1-like; K15639 PHYB activation tagged suppressor 1 [EC:1.14.-.-] (A)","[QI]","--","Cytochrome P450 734A1 GN=F18A8.8 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","--"]
["EVM0023224",0.003305481,0.000451621,-1.575748334,"up,down","--","--","--","--","--","--","Protein NDR1 (Precursor) GN=NDR1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","S","Function unknown","--"]
["EVM0025947",0.000131541,{"v":1.15e-05,"d":"1.15E-05"},1.780467443,"up","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0001334",0.004969279,0.000866735,-2.685422322,"down","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","--","K04123|2.1352e-176|fve:101291058|ent-kaurenoic acid oxidase 1-like; K04123 ent-kaurenoic acid hydroxylase [EC:1.14.13.79] (A)","[QI]","--","Ent-kaurenoic acid oxidase 2 GN=T32F6.4 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","Q","Secondary metabolites biosynthesis, transport and catabolism","--"]
["EVM0005013",0.003617439,0.000544916,-1.575748334,"up,down","[O]","Posttranslational modification, protein turnover, chaperones ","Molecular Function: nucleotide binding (GO:0000166);; Molecular Function: nucleoside-triphosphatase activity (GO:0017111);; Biological Process: primary metabolic process (GO:0044238);; Biological Process: organic substance metabolic process (GO:0071704);; ","--","[O]","Posttranslational modification, protein turnover, chaperones ","Protein cfxQ homolog GN=cfxQ OS=Odontella sinensis (Marine centric diatom) PE=3 SV=1","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0025915",0.000870664,{"v":9.36e-05,"d":"9.36E-05"},-1.307666533,"down","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0018922",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1B-14 GN=R1B-14 OS=Solanum demissum (Wild potato) PE=3 SV=1","T","Signal transduction mechanisms","--"]
["Salvia_newGene_55337",0.002108628,0.000251319,1.378487044,"up","--","--","Molecular Function: metal ion binding (GO:0046872);; ","--","[R]","General function prediction only ","Endonuclease OS=Nicotiana tabacum (Common tobacco) PE=2 SV=1","R","General function prediction only","retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa Japonica Group] "]
["EVM0008821",0.003617439,0.000544916,-1.575748334,"up,down","--","--","--","K11126|0|sly:101244526|telomerase reverse transcriptase; K11126 telomerase reverse transcriptase [EC:2.7.7.49] (A)","[LB]","--","Telomerase reverse transcriptase GN=TERT OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","L","Replication, recombination and repair","--"]
["EVM0021600",0.006008258,0.001082884,-3.873231793,"down","[RTKL]","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Biological Process: regulation of organelle organization (GO:0033043);; Biological Process: primary metabolic process (GO:0044238);; Biological Process: cellular macromolecule metabolic process (GO:0044260);; Biological Process: anatomical structure development (GO:0048856);; ","K08818|0|vvi:100246062|cyclin-dependent kinase G-2; K08818 cell division cycle 2-like [EC:2.7.11.22] (A)","[R]","General function prediction only ","Cyclin-dependent kinase G-2 GN=OJ991113_30.14 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2","T","Signal transduction mechanisms","--"]
["EVM0008593",{"v":9.26e-06,"d":"9.26E-06"},{"v":5.92e-07,"d":"5.92E-07"},2.146060612,"up","--","--","--","--","[GC]","--","UDP-glycosyltransferase 86A1 GN=UGT86A1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","G","Carbohydrate transport and metabolism","--"]
["Salvia_newGene_54467",{"v":1.77e-07,"d":"1.77E-07"},{"v":6.8e-09,"d":"6.80E-09"},1.982657973,"up","[L]","Replication, recombination and repair ","Molecular Function: catalytic activity (GO:0003824);; Cellular Component: mitochondrion (GO:0005739);; ","--","[R]","General function prediction only ","RNA-directed DNA polymerase homolog OS=Oenothera berteroana (Bertero&apos;s evening primrose) PE=4 SV=1","R","General function prediction only","OSJNBa0006B20.7 [Oryza sativa Japonica Group] "]
["EVM0025142",{"v":4.69e-08,"d":"4.69E-08"},{"v":1.23e-09,"d":"1.23E-09"},2.255629445,"up","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Molecular Function: copper ion binding (GO:0005507);; Biological Process: plant-type secondary cell wall biogenesis (GO:0009834);; Biological Process: lignin catabolic process (GO:0046274);; Cellular Component: apoplast (GO:0048046);; Molecular Function: hydroquinone:oxygen oxidoreductase activity (GO:0052716);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Laccase-4 (Precursor) GN=F16M14.1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","Q","Secondary metabolites biosynthesis, transport and catabolism","--"]
["EVM0014825",{"v":9.26e-06,"d":"9.26E-06"},{"v":5.92e-07,"d":"5.92E-07"},2.146060612,"up","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1B-8 GN=R1B-8 OS=Solanum demissum (Wild potato) PE=5 SV=1","T","Signal transduction mechanisms","--"]
["EVM0011789",0.006008258,0.001082884,-3.873231793,"down","--","--","Molecular Function: nucleotide binding (GO:0000166);; ","--","[S]","Function unknown ","--","S","Function unknown","--"]
["EVM0003623",0.00280583,0.000350729,1.891294437,"up","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0005492",0.000859097,{"v":8.99e-05,"d":"8.99E-05"},1.605568787,"up","--","--","Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: GTPase activator activity (GO:0005096);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: response to xenobiotic stimulus (GO:0009410);; Biological Process: endoplasmic reticulum unfolded protein response (GO:0030968);; Biological Process: positive regulation of GTPase activity (GO:0043547);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Molecular Function: protein dimerization activity (GO:0046983);; ","K14431|0|pvu:PHAVU_001G140100g|hypothetical protein; K14431 transcription factor TGA (A)","--","--","TGACG-sequence-specific DNA-binding protein TGA-2.1 GN=TGA21 OS=Nicotiana tabacum (Common tobacco) PE=1 SV=1","K","Transcription","--"]
["EVM0022482",0.006340017,0.001203061,1.325876238,"up","[KAD]","--","Biological Process: multicellular organismal process (GO:0032501);; Biological Process: single-organism process (GO:0044699);; Biological Process: anatomical structure development (GO:0048856);; ","K09422|5.15922e-74|sly:101255008|transcription factor MYB98-like; K09422 myb proto-oncogene protein, plant (A)","[K]","Transcription ","Transcription factor MYB98 GN=MYB98 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","K","Transcription","--"]
["EVM0003628",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1A-6 GN=R1A-6 OS=Solanum demissum (Wild potato) PE=3 SV=2","T","Signal transduction mechanisms","--"]
["EVM0007248",{"v":9.26e-06,"d":"9.26E-06"},{"v":5.92e-07,"d":"5.92E-07"},2.146060612,"up","[L]","Replication, recombination and repair ","--","K10838|0|sly:101265989|DNA repair protein complementing XP-C cells homolog; K10838 xeroderma pigmentosum group C-complementing protein (A)","[L]","Replication, recombination and repair ","Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","L","Replication, recombination and repair","--"]
["EVM0005113",0.0048876,0.00083828,1.08721942,"up","--","--","Molecular Function: binding (GO:0005488);; ","--","--","--","--","R","General function prediction only","--"]
["EVM0027273",{"v":4.33e-15,"d":"4.33E-15"},{"v":2.16e-17,"d":"2.16E-17"},-4.227019327,"down","--","--","Molecular Function: nucleotide binding (GO:0000166);; Cellular Component: intracellular (GO:0005622);; Molecular Function: transferase activity, transferring alkyl or aryl (other than methyl) groups (GO:0016765);; Molecular Function: ion binding (GO:0043167);; Biological Process: cellular macromolecule metabolic process (GO:0044260);; Biological Process: nucleic acid metabolic process (GO:0090304);; ","K00791|0|sot:102594223|tRNA dimethylallyltransferase 2-like; K00791 tRNA dimethylallyltransferase [EC:2.5.1.75] (A)","[J]","Translation, ribosomal structure and biogenesis ","tRNA dimethylallyltransferase 2 GN=IPT2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","J","Translation, ribosomal structure and biogenesis","--"]
["EVM0023533",0.004594858,0.000734643,1.289646579,"up","[U]","Intracellular trafficking, secretion, and vesicular transport ","Molecular Function: structural molecule activity (GO:0005198);; Biological Process: intracellular protein transport (GO:0006886);; Biological Process: vesicle-mediated transport (GO:0016192);; Cellular Component: COPI vesicle coat (GO:0030126);; ","K17301|0|tcc:TCM_036827|Coatomer, beta subunit isoform 1; K17301 coatomer, subunit beta (A)","[U]","Intracellular trafficking, secretion, and vesicular transport ","Coatomer subunit beta-1 GN=At4g31480 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","U","Intracellular trafficking, secretion, and vesicular transport","--"]
["EVM0024104",0.002108628,0.000251319,1.378487044,"up","--","--","--","--","[O]","Posttranslational modification, protein turnover, chaperones ","Protein ASPARTIC PROTEASE IN GUARD CELL 1 (Precursor) GN=ASPG1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0008913",0.000870664,{"v":9.36e-05,"d":"9.36E-05"},-1.307666533,"down","--","--","--","K13457|1.0711e-146|sot:102595981|putative disease resistance protein At1g50180-like (A)","[T]","Signal transduction mechanisms ","Disease resistance protein RPP8 GN=MWF20.19 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","T","Signal transduction mechanisms","--"]
["EVM0008738",{"v":4.88e-07,"d":"4.88E-07"},{"v":2.13e-08,"d":"2.13E-08"},-1.868863205,"down","--","--","--","--","[L]","Replication, recombination and repair ","Polyadenylate-binding protein-interacting protein 7 GN=CID7 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","L","Replication, recombination and repair","--"]
["EVM0022207",0.001255966,0.00013874,1.248541407,"up","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1A-6 GN=R1A-6 OS=Solanum demissum (Wild potato) PE=3 SV=2","T","Signal transduction mechanisms","--"]
["EVM0019675",0.002108628,0.000251319,1.378487044,"up","--","--","Biological Process: embryo development ending in seed dormancy (GO:0009793);; ","--","--","--","Protein ROOT PRIMORDIUM DEFECTIVE 1 GN=RPD1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","S","Function unknown","--"]
["EVM0024855",0.006340017,0.001206158,1.325876238,"up","--","--","--","--","--","--","Protein BASIC PENTACYSTEINE4 GN=BPC4 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","K","Transcription","--"]
["EVM0002757",0.001255966,0.00013874,1.248541407,"up","--","--","--","--","--","--","--","S","Function unknown","--"]
["Salvia_newGene_53923",0.004594858,0.000734643,1.289646579,"up","--","--","--","--","[T]","Signal transduction mechanisms ","Disease resistance protein RPH8A GN=RPH8A OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1","T","Signal transduction mechanisms","hypothetical protein MIMGU_mgv1a023055mg [Erythranthe guttata]"]
["EVM0012343",0.006008258,0.001082884,-3.873231793,"down","--","--","--","--","[R]","General function prediction only ","Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial (Precursor) GN=At1g12700 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1","R","General function prediction only","--"]
["EVM0013287",0.006340017,0.001206158,1.325876238,"up","--","--","--","--","[K]","Transcription ","Agamous-like MADS-box protein AGL61 GN=F27C12.24 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","K","Transcription","--"]
["EVM0018546",{"v":1.22e-05,"d":"1.22E-05"},{"v":8.49e-07,"d":"8.49E-07"},1.873541896,"up","[R]","General function prediction only ","--","K11866|0|sly:101266109|AMSH-like ubiquitin thioesterase 1; K11866 STAM-binding protein [EC:3.4.19.12] (A)","[T]","Signal transduction mechanisms ","AMSH-like ubiquitin thioesterase 1 GN=AMSH1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0008332",0.000870664,{"v":9.36e-05,"d":"9.36E-05"},-1.307666533,"down","--","--","--","K13459|1.20921e-42|sly:101244633|putative disease resistance protein At1g63350; K13459 disease resistance protein RPS2 (A)","[T]","Signal transduction mechanisms ","Probable disease resistance protein At4g27220 GN=At4g27220 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","T","Signal transduction mechanisms","--"]
["EVM0012584",0.002108628,0.000251319,1.378487044,"up","--","--","Biological Process: very long-chain fatty acid metabolic process (GO:0000038);; Cellular Component: endoplasmic reticulum (GO:0005783);; Biological Process: fatty acid biosynthetic process (GO:0006633);; Biological Process: response to cold (GO:0009409);; Biological Process: response to light stimulus (GO:0009416);; Biological Process: unidimensional cell growth (GO:0009826);; Molecular Function: fatty acid elongase activity (GO:0009922);; Biological Process: wax biosynthetic process (GO:0010025);; Cellular Component: membrane (GO:0016020);; Biological Process: cuticle development (GO:0042335);; Biological Process: pollen tube development (GO:0048868);; ","K15397|0|sot:102603922|CER6; 3-ketoacyl-CoA synthase 6-like; K15397 3-ketoacyl-CoA synthase [EC:2.3.1.199] (A)","--","--","3-ketoacyl-CoA synthase 5 GN=F2J7.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","M","Cell wall/membrane/envelope biogenesis","--"]
["EVM0021732",{"v":4.33e-15,"d":"4.33E-15"},{"v":2.16e-17,"d":"2.16E-17"},-4.227019327,"down","[J]","Translation, ribosomal structure and biogenesis ","Biological Process: mitotic G2 phase (GO:0000085);; Molecular Function: DNA binding (GO:0003677);; Cellular Component: mRNA cleavage and polyadenylation specificity factor complex (GO:0005847);; Biological Process: DNA methylation (GO:0006306);; Biological Process: chromatin silencing (GO:0006342);; Biological Process: mRNA polyadenylation (GO:0006378);; Biological Process: mRNA cleavage (GO:0006379);; Biological Process: cell-cell signaling (GO:0007267);; Biological Process: pyrimidine ribonucleotide biosynthetic process (GO:0009220);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: virus induced gene silencing (GO:0009616);; Biological Process: photomorphogenesis (GO:0009640);; Biological Process: embryo development ending in seed dormancy (GO:0009793);; Biological Process: production of ta-siRNAs involved in RNA interference (GO:0010267);; Biological Process: cullin deneddylation (GO:0010388);; Biological Process: covalent chromatin modification (GO:0016569);; Molecular Function: hydrolase activity (GO:0016787);; Biological Process: production of miRNAs involved in gene silencing by miRNA (GO:0035196);; ","K14402|0|vvi:100267865|cleavage and polyadenylation specificity factor subunit 2; K14402 cleavage and polyadenylation specificity factor subunit 2 (A)","[A]","RNA processing and modification ","Cleavage and polyadenylation specificity factor subunit 2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","A","RNA processing and modification","--"]
["EVM0006719",0.006340017,0.001203061,1.325876238,"up","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Molecular Function: copper ion binding (GO:0005507);; Biological Process: lignin catabolic process (GO:0046274);; Cellular Component: apoplast (GO:0048046);; Molecular Function: hydroquinone:oxygen oxidoreductase activity (GO:0052716);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Laccase-12 (Precursor) GN=LAC12 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","--"]
["EVM0010284",0.004594858,0.000734643,1.289646579,"up","--","--","--","--","[U]","Intracellular trafficking, secretion, and vesicular transport ","--","U","Intracellular trafficking, secretion, and vesicular transport","--"]
["EVM0008250",0.006008258,0.001082884,-3.873231793,"down","[E]","Amino acid transport and metabolism ","Molecular Function: N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity (GO:0003992);; Molecular Function: copper ion binding (GO:0005507);; Biological Process: arginine biosynthetic process (GO:0006526);; Cellular Component: chloroplast stroma (GO:0009570);; Molecular Function: pyridoxal phosphate binding (GO:0030170);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: interspecies interaction between organisms (GO:0044419);; Biological Process: ovule development (GO:0048481);; Biological Process: primary root development (GO:0080022);; ","K00818|0|sot:102578694|acetylornithine aminotransferase, mitochondrial-like; K00818 acetylornithine aminotransferase [EC:2.6.1.11] (A)","[E]","Amino acid transport and metabolism ","Acetylornithine aminotransferase, chloroplastic/mitochondrial (Precursor) GN=WIN1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","E","Amino acid transport and metabolism","--"]
["EVM0013372",{"v":4.69e-08,"d":"4.69E-08"},{"v":1.23e-09,"d":"1.23E-09"},2.255629445,"up","[O]","Posttranslational modification, protein turnover, chaperones ","Molecular Function: serine-type endopeptidase activity (GO:0004252);; Cellular Component: extracellular region (GO:0005576);; Biological Process: proteolysis (GO:0006508);; Molecular Function: identical protein binding (GO:0042802);; Biological Process: negative regulation of catalytic activity (GO:0043086);; ","--","--","--","Subtilisin-like protease (Precursor) GN=At5g67360 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0006687",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Late blight resistance protein R1-A GN=R1A OS=Solanum demissum (Wild potato) PE=3 SV=1","T","Signal transduction mechanisms","--"]
["EVM0006436",{"v":9.26e-06,"d":"9.26E-06"},{"v":5.92e-07,"d":"5.92E-07"},2.146060612,"up","--","--","--","--","--","--","Lipid transfer-like protein VAS (Precursor) GN=VAS OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","--"]
["EVM0001404",0.006340017,0.001203061,1.325876238,"up","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","Ethylene-responsive transcription factor ERF110 GN=ERF110 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","K","Transcription","--"]
["EVM0018949",{"v":1.77e-07,"d":"1.77E-07"},{"v":6.8e-09,"d":"6.80E-09"},1.982657973,"up","[U]","Intracellular trafficking, secretion, and vesicular transport ","Biological Process: protein transport (GO:0015031);; Cellular Component: membrane (GO:0016020);; ","K10956|0|pper:PRUPE_ppa005131mg|hypothetical protein; K10956 protein transport protein SEC61 subunit alpha (A)","[UO]","--","Protein transport protein Sec61 subunit alpha OS=Pyrenomonas salina PE=2 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","--"]
["EVM0013570",0.001255966,0.00013874,1.248541407,"up","--","--","--","K15082|0|pmum:103340578|uncharacterized LOC103340578; K15082 DNA repair protein RAD7 (A)","--","--","EIN3-binding F-box protein 1 GN=F13B15.15 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","R","General function prediction only","--"]
["Salvia_newGene_57843",0.006008258,0.001082884,-3.873231793,"down","--","--","--","--","--","--","Protein TIC 55, chloroplastic (Precursor) GN=F27C12.26 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","--","--","--"]
["EVM0026166",0.001435248,0.000164806,1.255222109,"up","[Z]","Cytoskeleton ","--","K11498|0|sly:101252983|kinesin-like protein NACK2; K11498 centromeric protein E (A)","[Z]","Cytoskeleton ","Kinesin-like protein NACK1 GN=NACK1 OS=Nicotiana tabacum (Common tobacco) PE=1 SV=1","Z","Cytoskeleton","--"]
["EVM0002107",0.001435248,0.000164806,1.255222109,"up","[KL]","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: chromatin binding (GO:0003682);; Molecular Function: helicase activity (GO:0004386);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytosol (GO:0005829);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: organ boundary specification between lateral organs and the meristem (GO:0010199);; Biological Process: regulation of gene expression, epigenetic (GO:0040029);; Biological Process: ATP-dependent chromatin remodeling (GO:0043044);; ","K11647|0|vvi:100249945|ATP-dependent helicase BRM; K11647 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:3.6.4.-] (A)","[BK]","--","ATP-dependent helicase BRM OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","K","Transcription","--"]
["EVM0017241",{"v":4.69e-08,"d":"4.69E-08"},{"v":1.23e-09,"d":"1.23E-09"},2.255629445,"up","--","--","--","K13103|0|sly:101251039|septin and tuftelin-interacting protein 1 homolog 1; K13103 tuftelin-interacting protein 11 (A)","[A]","RNA processing and modification ","Septin and tuftelin-interacting protein 1 homolog 1 GN=STIPL1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","A","RNA processing and modification","--"]
["EVM0009982",{"v":6.97e-07,"d":"6.97E-07"},{"v":3.45e-08,"d":"3.45E-08"},-3.330263518,"down","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0024748",{"v":4.69e-08,"d":"4.69E-08"},{"v":1.23e-09,"d":"1.23E-09"},2.255629445,"up","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Molecular Function: copper ion binding (GO:0005507);; Biological Process: lignin catabolic process (GO:0046274);; Cellular Component: apoplast (GO:0048046);; Molecular Function: hydroquinone:oxygen oxidoreductase activity (GO:0052716);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Laccase-17 (Precursor) GN=LAC17 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","--"]
["EVM0018189",0.000834612,{"v":8.25e-05,"d":"8.25E-05"},-1.278991609,"down","[MR]","--","Molecular Function: catalytic activity (GO:0003824);; Biological Process: metabolic process (GO:0008152);; Cellular Component: chloroplast (GO:0009507);; ","--","--","--","L-Ala-D/L-amino acid epimerase GN=POPTR_0012s05040g OS=Populus trichocarpa (Western balsam poplar) PE=3 SV=2","S","Function unknown","--"]
["Salvia_newGene_250",0.001255966,0.00013874,1.248541407,"up","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1A-6 GN=R1A-6 OS=Solanum demissum (Wild potato) PE=3 SV=2","T","Signal transduction mechanisms","hypothetical protein MIMGU_mgv1a001245mg [Erythranthe guttata]"]
["EVM0000533",0.00280583,0.000350729,1.891294437,"up","--","--","Biological Process: metabolic process (GO:0008152);; ","--","--","--","Polyphenol oxidase I, chloroplastic GN=co-1 OS=Ipomoea batatas (Sweet potato) PE=1 SV=1","S","Function unknown","--"]
["EVM0008034",0.000859097,{"v":8.99e-05,"d":"8.99E-05"},1.605568787,"up","[RTKL]","--","Biological Process: MAPK cascade (GO:0000165);; Molecular Function: nucleotide binding (GO:0000166);; Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Biological Process: protein phosphorylation (GO:0006468);; ","--","--","--","Cysteine-rich receptor-like protein kinase 3 (Precursor) GN=CRK3 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","T","Signal transduction mechanisms","--"]
["EVM0006232",0.000870664,{"v":9.36e-05,"d":"9.36E-05"},-1.307666533,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Disease resistance RPP8-like protein 3 GN=RPP8L3 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","T","Signal transduction mechanisms","--"]
["EVM0003827",0.001435248,0.000164806,1.255222109,"up","--","--","--","--","[T]","Signal transduction mechanisms ","Disease resistance protein RPH8A GN=RPH8A OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1","T","Signal transduction mechanisms","--"]
["EVM0027249",0.006008258,0.001082884,-3.873231793,"down","--","--","Molecular Function: zinc ion binding (GO:0008270);; ","--","[O]","Posttranslational modification, protein turnover, chaperones ","--","O","Posttranslational modification, protein turnover, chaperones","--"]
["Salvia_newGene_72664",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1B-16 GN=R1B-16 OS=Solanum demissum (Wild potato) PE=3 SV=1","T","Signal transduction mechanisms","hypothetical protein MIMGU_mgv1a024375mg, partial [Erythranthe guttata]"]
["EVM0023344",0.003305481,0.000451621,-1.575748334,"up,down","[P]","Inorganic ion transport and metabolism ","Biological Process: cation transport (GO:0006812);; Molecular Function: solute:proton antiporter activity (GO:0015299);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: transmembrane transport (GO:0055085);; ","--","[P]","Inorganic ion transport and metabolism ","K(+) efflux antiporter 4 GN=KEA4 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","P","Inorganic ion transport and metabolism","--"]
["Salvia_newGene_5727",0.003350436,0.000486982,-1.819323946,"down","--","--","--","--","--","--","--","--","--","PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]"]
["EVM0027467",0.001255966,0.00013874,1.248541407,"up","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1B-17 GN=R1B-17 OS=Solanum demissum (Wild potato) PE=3 SV=1","T","Signal transduction mechanisms","--"]
["EVM0024189",0.00280583,0.000350729,1.891294437,"up","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0020644",0.003305481,0.000451621,-1.575748334,"up,down","--","--","--","K15015|0|cit:102615499|vacuolar amino acid transporter 1-like; K15015 solute carrier family 32 (vesicular inhibitory amino acid transporter) (A)","[E]","Amino acid transport and metabolism ","--","E","Amino acid transport and metabolism","--"]
["EVM0026167",0.002882341,0.00037705,-1.99604038,"down","--","--","--","--","[S]","Function unknown ","--","S","Function unknown","--"]
["EVM0005694",0.004594858,0.000734643,1.289646579,"up","--","--","--","--","--","--","Transcription factor IBH1 OS=Oryza sativa subsp. indica (Rice) PE=3 SV=1","K","Transcription","--"]
["EVM0012161",0.00084516,{"v":8.6e-05,"d":"8.60E-05"},-1.53399087,"down","--","--","--","--","[TU]","--","Putative clathrin assembly protein At4g40080 GN=At4g40080 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","S","Function unknown","--"]
["EVM0020181",0.00084516,{"v":8.6e-05,"d":"8.60E-05"},-1.53399087,"down","[A]","RNA processing and modification ","--","--","[A]","RNA processing and modification ","Probable E3 ubiquitin ligase SUD1 GN=F28A23.140 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","A","RNA processing and modification","--"]
["EVM0028056",0.004594858,0.000734643,1.289646579,"up","--","--","Biological Process: cellular process (GO:0009987);; ","--","--","--","--","S","Function unknown","--"]
["Salvia_newGene_52964",0.004594858,0.000734643,1.289646579,"up","--","--","--","--","[T]","Signal transduction mechanisms ","Disease resistance RPP8-like protein 3 GN=RPP8L3 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","hypothetical protein MIMGU_mgv1a023055mg [Erythranthe guttata]"]
["Salvia_newGene_131",0.001255966,0.00013874,1.248541407,"up","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1B-8 GN=R1B-8 OS=Solanum demissum (Wild potato) PE=5 SV=1","T","Signal transduction mechanisms","hypothetical protein MIMGU_mgv1a001149mg [Erythranthe guttata]"]
["EVM0003808",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1A-6 GN=R1A-6 OS=Solanum demissum (Wild potato) PE=3 SV=2","T","Signal transduction mechanisms","--"]
["Salvia_newGene_81475",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1A-6 GN=R1A-6 OS=Solanum demissum (Wild potato) PE=3 SV=2","T","Signal transduction mechanisms","hypothetical protein MIMGU_mgv1a024734mg [Erythranthe guttata]"]
["EVM0025231",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1C-3 GN=R1C-3 OS=Solanum demissum (Wild potato) PE=3 SV=1","T","Signal transduction mechanisms","--"]
["EVM0022843",0.004969279,0.000866735,-2.685422322,"down","--","--","Molecular Function: motor activity (GO:0003774);; Molecular Function: actin binding (GO:0003779);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: myosin complex (GO:0016459);; ","K10357|0|sot:102586997|myosin-12-like; K10357 myosin V (A)","[Z]","Cytoskeleton ","Myosin-12 GN=F20M17.6 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","Z","Cytoskeleton","--"]
["EVM0021367",0.006340017,0.001206158,1.325876238,"up","--","--","Molecular Function: hydrolase activity (GO:0016787);; Cellular Component: cytoplasmic part (GO:0044444);; ","--","[R]","General function prediction only ","Tubby-like F-box protein 5 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","R","General function prediction only","--"]
["EVM0011555",0.006008258,0.001082884,-3.873231793,"down","[Z]","Cytoskeleton ","Molecular Function: binding (GO:0005488);; ","K10400|0|vvi:100255624|phragmoplast orienting kinesin 2; K10400 kinesin family member 15 (A)","[Z]","Cytoskeleton ","Phragmoplast orienting kinesin 2 GN=POK2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","Z","Cytoskeleton","--"]
["EVM0016748",0.001255966,0.00013874,1.248541407,"up,down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1A-6 GN=R1A-6 OS=Solanum demissum (Wild potato) PE=3 SV=2","T","Signal transduction mechanisms","--"]
["EVM0007704",0.003305481,0.000451621,-1.575748334,"up,down","[G]","Carbohydrate transport and metabolism ","Molecular Function: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity (GO:0004801);; Biological Process: carbohydrate metabolic process (GO:0005975);; Biological Process: acetyl-CoA metabolic process (GO:0006084);; Molecular Function: zinc ion binding (GO:0008270);; Cellular Component: chloroplast stroma (GO:0009570);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: sterol biosynthetic process (GO:0016126);; Biological Process: brassinosteroid biosynthetic process (GO:0016132);; Biological Process: cysteine biosynthetic process (GO:0019344);; ","K00616|0|sot:102581220|probable transaldolase-like; K00616 transaldolase [EC:2.2.1.2] (A)","[G]","Carbohydrate transport and metabolism ","--","G","Carbohydrate transport and metabolism","--"]
["EVM0021852",0.003305481,0.000451621,-1.575748334,"up,down","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Molecular Function: iron ion binding (GO:0005506);; Molecular Function: electron carrier activity (GO:0009055);; Molecular Function: heme binding (GO:0020037);; Molecular Function: flavonoid 3',5'-hydroxylase activity (GO:0033772);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Cytochrome P450 CYP736A12 OS=Panax ginseng (Korean ginseng) PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","--"]
["EVM0005263",0.006340017,0.001206158,1.325876238,"up","--","--","Molecular Function: alternative oxidase activity (GO:0009916);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: electron transport chain (GO:0022900);; Molecular Function: metal ion binding (GO:0046872);; Cellular Component: respiratory chain (GO:0070469);; ","K17893|4.29538e-44|cic:CICLE_v10003687mg|hypothetical protein; K17893 ubiquinol oxidase [EC:1.10.3.11] (A)","--","--","Ubiquinol oxidase 3, mitochondrial (Precursor) OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","S","Function unknown","--"]
["Salvia_newGene_60935",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1C-3 GN=R1C-3 OS=Solanum demissum (Wild potato) PE=3 SV=1","T","Signal transduction mechanisms","hypothetical protein MIMGU_mgv1a021434mg [Erythranthe guttata]"]
["Salvia_newGene_50499",0.002108628,0.000251319,1.378487044,"up","[MG]","--","--","--","[R]","General function prediction only ","Sugar transport protein 9 GN=STP9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","R","General function prediction only","PREDICTED: sugar transport protein 1-like, partial [Cicer arietinum]"]
["EVM0007030",0.00280583,0.000350729,1.891294437,"up","--","--","--","--","--","--","F-box protein At5g52880 GN=At5g52880 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","--"]
["EVM0003795",{"v":4.69e-08,"d":"4.69E-08"},{"v":1.23e-09,"d":"1.23E-09"},2.255629445,"up","[RTKL]","--","Biological Process: response to reactive oxygen species (GO:0000302);; Molecular Function: protein binding (GO:0005515);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: signal transduction (GO:0007165);; Biological Process: response to cold (GO:0009409);; Biological Process: response to water deprivation (GO:0009414);; Biological Process: response to salt stress (GO:0009651);; Biological Process: response to abscisic acid (GO:0009737);; Molecular Function: kinase activity (GO:0016301);; Biological Process: pollen sperm cell differentiation (GO:0048235);; ","--","[T]","Signal transduction mechanisms ","Mitogen-activated protein kinase kinase kinase NPK1 GN=NPK1 OS=Nicotiana tabacum (Common tobacco) PE=1 SV=1","T","Signal transduction mechanisms","--"]
["EVM0003947",{"v":9.26e-06,"d":"9.26E-06"},{"v":5.92e-07,"d":"5.92E-07"},2.146060612,"up","[G]","Carbohydrate transport and metabolism ","Biological Process: carbohydrate metabolic process (GO:0005975);; Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor (GO:0016901);; Molecular Function: quinone binding (GO:0048038);; ","--","--","--","HIPL1 protein (Precursor) GN=HIPL1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","R","General function prediction only","--"]
["EVM0015316",{"v":6.97e-07,"d":"6.97E-07"},{"v":3.45e-08,"d":"3.45E-08"},-2.255177753,"down","[O]","Posttranslational modification, protein turnover, chaperones ","--","K10592|0|vvi:100246297|E3 ubiquitin-protein ligase UPL1; K10592 E3 ubiquitin-protein ligase HUWE1 [EC:6.3.2.19] (A)","[OK]","--","E3 ubiquitin-protein ligase UPL1 GN=UPL1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=3","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0022218",{"v":1.77e-07,"d":"1.77E-07"},{"v":6.8e-09,"d":"6.80E-09"},1.982657973,"up","--","--","--","K17907|0|rcu:RCOM_0463550|hypothetical protein; K17907 autophagy-related protein 9 (A)","[R]","General function prediction only ","--","S","Function unknown","--"]
["Salvia_newGene_53895",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1B-17 GN=R1B-17 OS=Solanum demissum (Wild potato) PE=3 SV=1","T","Signal transduction mechanisms","PREDICTED: putative late blight resistance protein homolog R1A-10 isoform X1 [Sesamum indicum]"]
["EVM0001986",0.006008258,0.001082884,-3.873231793,"down","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0009021",0.006008258,0.001082884,-3.873231793,"down","[V]","Defense mechanisms ","Molecular Function: ATP binding (GO:0005524);; Biological Process: ATP catabolic process (GO:0006200);; Molecular Function: xenobiotic-transporting ATPase activity (GO:0008559);; Molecular Function: peptide-transporting ATPase activity (GO:0015440);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: transmembrane transport (GO:0055085);; ","K05658|0|pper:PRUPE_ppa023953mg|hypothetical protein; K05658 ATP-binding cassette, subfamily B (MDR/TAP), member 1 [EC:3.6.3.44] (A)","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","ABC transporter B family member 1 GN=T1J8.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","--"]
["EVM0022590",0.000870664,{"v":9.36e-05,"d":"9.36E-05"},1.08721942,"up,down","[EH]","--","Biological Process: sulfate reduction (GO:0019419);; Molecular Function: adenylyl-sulfate reductase (glutathione) activity (GO:0033741);; Biological Process: cell redox homeostasis (GO:0045454);; ","K05907|0|pmum:103324412|5'-adenylylsulfate reductase 3, chloroplastic-like; K05907 adenylyl-sulfate reductase (glutathione) [EC:1.8.4.9] (A)","[E]","Amino acid transport and metabolism ","5&apos;-adenylylsulfate reductase 3, chloroplastic (Precursor) GN=F1N20.90 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","E","Amino acid transport and metabolism","--"]
["EVM0024503",0.006008258,0.001082884,-3.873231793,"down","--","--","--","--","--","--","Transcription factor LAX PANICLE OS=Oryza sativa subsp. japonica (Rice) PE=1 SV=1","K","Transcription","--"]
["EVM0011289",{"v":4.33e-15,"d":"4.33E-15"},{"v":3.83e-17,"d":"3.83E-17"},3.394700436,"up","[O]","Posttranslational modification, protein turnover, chaperones ","Molecular Function: glutathione transferase activity (GO:0004364);; Biological Process: response to stress (GO:0006950);; Biological Process: auxin-activated signaling pathway (GO:0009734);; ","K00799|1.97902e-104|pper:PRUPE_ppa011383mg|hypothetical protein; K00799 glutathione S-transferase [EC:2.5.1.18] (A)","[O]","Posttranslational modification, protein turnover, chaperones ","Glutathione S-transferase PARB GN=PARB OS=Nicotiana tabacum (Common tobacco) PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0012250",0.004969279,0.000866735,-2.685422322,"down","--","--","Molecular Function: metal ion binding (GO:0046872);; ","--","[O]","Posttranslational modification, protein turnover, chaperones ","Probable E3 ubiquitin-protein ligase ARI9 GN=ARI9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0026831",0.003617439,0.000544916,-1.575748334,"up,down","[N]","Cell motility ","Cellular Component: ESCRT III complex (GO:0000815);; Biological Process: protein transport (GO:0015031);; Biological Process: vesicle-mediated transport (GO:0016192);; ","K12192|6.6618e-102|pmum:103334447|vacuolar protein sorting-associated protein 2 homolog 3; K12192 charged multivesicular body protein 2B (A)","[U]","Intracellular trafficking, secretion, and vesicular transport ","Vacuolar protein sorting-associated protein 2 homolog 3 GN=F21M11.12 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","--"]
["EVM0022354",0.000859097,{"v":8.99e-05,"d":"8.99E-05"},1.605568787,"up","--","--","Cellular Component: extracellular region (GO:0005576);; Cellular Component: cell wall (GO:0005618);; Biological Process: unidimensional cell growth (GO:0009826);; Biological Process: plant-type cell wall loosening (GO:0009828);; Biological Process: plant-type cell wall modification involved in multidimensional cell growth (GO:0009831);; Cellular Component: membrane (GO:0016020);; ","--","--","--","Expansin-A1 (Precursor) GN=OSJNBa0065B15.2 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2","R","General function prediction only","--"]
["EVM0003369",0.006340017,0.001206158,1.325876238,"up","--","--","Cellular Component: mitochondrion (GO:0005739);; Biological Process: respiratory gaseous exchange (GO:0007585);; Biological Process: response to ethylene (GO:0009723);; Biological Process: abscisic acid-activated signaling pathway (GO:0009738);; Molecular Function: alternative oxidase activity (GO:0009916);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: electron transport chain (GO:0022900);; Biological Process: intracellular signal transduction (GO:0035556);; Molecular Function: metal ion binding (GO:0046872);; Cellular Component: respiratory chain (GO:0070469);; ","K17893|4.55674e-28|mus:103986636|ubiquinol oxidase 2, mitochondrial-like; K17893 ubiquinol oxidase [EC:1.10.3.11] (A)","--","--","Ubiquinol oxidase 3, mitochondrial (Precursor) OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","S","Function unknown","--"]
["EVM0017233",0.002108628,0.000251319,1.378487044,"up","[RTKL]","--","Molecular Function: transferase activity, transferring phosphorus-containing groups (GO:0016772);; ","K08269|0|vvi:100251048|serine/threonine-protein kinase ATG1; K08269 serine/threonine-protein kinase ULK/ATG1 [EC:2.7.11.1] (A)","[OUT]","--","CBL-interacting serine/threonine-protein kinase 11 GN=At2g30360 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","T","Signal transduction mechanisms","--"]
["EVM0021099",0.003617439,0.000544916,-1.575748334,"up,down","[O]","Posttranslational modification, protein turnover, chaperones ","--","--","[O]","Posttranslational modification, protein turnover, chaperones ","Protein cfxQ homolog GN=cfxQ OS=Cyanidioschyzon merolae (Red alga) PE=3 SV=2","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0007658",0.001435248,0.000164806,1.255222109,"up","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: structural constituent of ribosome (GO:0003735);; Cellular Component: ribosome (GO:0005840);; Biological Process: translation (GO:0006412);; ","K02908|1.92321e-73|pop:POPTR_0009s16030g|60S ribosomal protein L30; K02908 large subunit ribosomal protein L30e (A)","[J]","Translation, ribosomal structure and biogenesis ","60S ribosomal protein L30 GN=RPL30 OS=Lupinus luteus (European yellow lupin) PE=3 SV=1","J","Translation, ribosomal structure and biogenesis","--"]
["EVM0011879",{"v":6.97e-07,"d":"6.97E-07"},{"v":3.45e-08,"d":"3.45E-08"},-3.330263518,"down","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0018346",0.006008258,0.001082884,-3.873231793,"down","--","--","Biological Process: mitotic cell cycle (GO:0000278);; Biological Process: RNA processing (GO:0006396);; Biological Process: protein folding (GO:0006457);; Biological Process: response to heat (GO:0009408);; Biological Process: response to high light intensity (GO:0009644);; Biological Process: response to hydrogen peroxide (GO:0042542);; ","K13205|0|sot:102597990|protein AAR2 homolog; K13205 A1 cistron-splicing factor AAR2 (A)","[A]","RNA processing and modification ","--","A","RNA processing and modification","--"]
["EVM0027281",0.006008258,0.001082884,-3.873231793,"down","--","--","--","--","[R]","General function prediction only ","Pentatricopeptide repeat-containing protein At5g46100 GN=At5g46100 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","--"]
["EVM0015612",0.0048876,0.00083828,1.08721942,"up","[K]","Transcription ","--","K03021|0|sot:102600550|DNA-directed RNA polymerase III subunit RPC2-like; K03021 DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6] (A)","[K]","Transcription ","DNA-directed RNA polymerase II subunit 2 GN=At4g21710 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","K","Transcription","--"]
["EVM0024410",0.004594858,0.000734643,1.289646579,"up","--","--","--","--","--","--","Protein FLX-like 1 GN=MIE1.26 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","S","Function unknown","--"]
["EVM0022331",0.00280583,0.000350729,1.891294437,"up","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Molecular Function: oxidoreductase activity (GO:0016491);; Molecular Function: metal ion binding (GO:0046872);; ","--","[QI]","--","Cytochrome P450 CYP72A219 OS=Panax ginseng (Korean ginseng) PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","--"]
["EVM0001546",0.006008258,0.001082884,-3.873231793,"down","[A]","RNA processing and modification ","--","--","[K]","Transcription ","Carbon catabolite repressor protein 4 homolog 6 GN=CCR4-6 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","K","Transcription","--"]
["EVM0011765",0.006008258,0.001082884,-3.873231793,"down","[F]","Nucleotide transport and metabolism ","Molecular Function: adenylate kinase activity (GO:0004017);; Molecular Function: copper ion binding (GO:0005507);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: purine nucleotide metabolic process (GO:0006163);; Biological Process: response to cadmium ion (GO:0046686);; Molecular Function: nucleoside triphosphate adenylate kinase activity (GO:0046899);; Biological Process: nucleotide phosphorylation (GO:0046939);; ","K00939|8.88672e-160|pvu:PHAVU_003G209400g|hypothetical protein; K00939 adenylate kinase [EC:2.7.4.3] (A)","[F]","Nucleotide transport and metabolism ","Adenylate kinase 4 GN=ADK-B OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","F","Nucleotide transport and metabolism","--"]
["EVM0023807",{"v":4.69e-08,"d":"4.69E-08"},{"v":1.23e-09,"d":"1.23E-09"},2.255629445,"up","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Molecular Function: monooxygenase activity (GO:0004497);; Molecular Function: iron ion binding (GO:0005506);; Molecular Function: electron carrier activity (GO:0009055);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705);; Molecular Function: heme binding (GO:0020037);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","[QI]","--","Cytochrome P450 CYP72A219 OS=Panax ginseng (Korean ginseng) PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","--"]
["Salvia_newGene_335",0.001255966,0.00013874,1.248541407,"up","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1A-6 GN=R1A-6 OS=Solanum demissum (Wild potato) PE=3 SV=2","T","Signal transduction mechanisms","hypothetical protein MIMGU_mgv1a023002mg [Erythranthe guttata]"]
["EVM0013420",0.001255966,0.00013874,1.248541407,"up","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1B-17 GN=R1B-17 OS=Solanum demissum (Wild potato) PE=3 SV=1","T","Signal transduction mechanisms","--"]
["EVM0006314",0.006008258,0.001082884,-3.873231793,"down","[O]","Posttranslational modification, protein turnover, chaperones ","Molecular Function: ATP binding (GO:0005524);; Molecular Function: microtubule-severing ATPase activity (GO:0008568);; ","--","[O]","Posttranslational modification, protein turnover, chaperones ","Katanin p60 ATPase-containing subunit A1 {ECO:0000255|HAMAP-Rule:MF_03023} GN=At1g80350 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0026171",0.003350436,0.000486982,-1.819323946,"down","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: structural constituent of ribosome (GO:0003735);; Cellular Component: ribosome (GO:0005840);; Biological Process: translation (GO:0006412);; Molecular Function: rRNA binding (GO:0019843);; ","K02940|3.26424e-112|cmo:103482923|60S ribosomal protein L9; K02940 large subunit ribosomal protein L9e (A)","[J]","Translation, ribosomal structure and biogenesis ","60S ribosomal protein L9 GN=RPL9 OS=Pisum sativum (Garden pea) PE=2 SV=1","J","Translation, ribosomal structure and biogenesis","--"]
["EVM0015934",0.006008258,0.001082884,-3.873231793,"down","[J]","Translation, ribosomal structure and biogenesis ","--","K10747|0|sot:102603887|DNA ligase 1-like; K10747 DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] (A)","[L]","Replication, recombination and repair ","DNA cross-link repair protein SNM1 GN=SNM1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","L","Replication, recombination and repair","--"]
["EVM0024540",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Disease resistance protein RPH8A GN=RPH8A OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1","T","Signal transduction mechanisms","--"]
["EVM0014193",0.00280583,0.000350729,1.891294437,"up","[U]","Intracellular trafficking, secretion, and vesicular transport ","Molecular Function: transporter activity (GO:0005215);; Biological Process: protein N-linked glycosylation (GO:0006487);; Biological Process: intracellular protein transport (GO:0006886);; Biological Process: ER to Golgi vesicle-mediated transport (GO:0006888);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: positive regulation of cell proliferation (GO:0008284);; Cellular Component: COPII vesicle coat (GO:0030127);; Biological Process: ER body organization (GO:0080119);; ","K14007|0|vvi:100252042|protein transport protein Sec24-like At3g07100; K14007 protein transport protein SEC24 (A)","[U]","Intracellular trafficking, secretion, and vesicular transport ","Protein transport protein Sec24-like At3g07100 GN=At3g07100 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","U","Intracellular trafficking, secretion, and vesicular transport","--"]
["EVM0011701",0.004594858,0.000734643,1.289646579,"up","[R]","General function prediction only ","Molecular Function: metalloendopeptidase activity (GO:0004222);; Biological Process: proteolysis (GO:0006508);; Molecular Function: zinc ion binding (GO:0008270);; Cellular Component: chloroplast (GO:0009507);; ","--","[O]","Posttranslational modification, protein turnover, chaperones ","Ubiquinol-cytochrome-c reductase complex core protein I, mitochondrial (Precursor) OS=Euglena gracilis PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0005805",0.000870664,{"v":9.36e-05,"d":"9.36E-05"},-1.307666533,"down","[EQ]","--","Cellular Component: cytosol (GO:0005829);; Biological Process: glutathione catabolic process (GO:0006751);; Cellular Component: plasmodesma (GO:0009506);; Molecular Function: 5-oxoprolinase (ATP-hydrolyzing) activity (GO:0017168);; ","K01469|0|rcu:RCOM_1248770|5-oxoprolinase, putative (EC:3.5.2.9); K01469 5-oxoprolinase (ATP-hydrolysing) [EC:3.5.2.9] (A)","[E]","Amino acid transport and metabolism ","5-oxoprolinase GN=OXP1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","E","Amino acid transport and metabolism","--"]
["EVM0024208",{"v":4.33e-15,"d":"4.33E-15"},{"v":3.83e-17,"d":"3.83E-17"},3.394700436,"up","[Z]","Cytoskeleton ","--","K11498|0|cic:CICLE_v10027716mg|hypothetical protein; K11498 centromeric protein E (A)","[Z]","Cytoskeleton ","Kinesin-like protein NACK1 GN=NACK1 OS=Nicotiana tabacum (Common tobacco) PE=1 SV=1","Z","Cytoskeleton","--"]
["Salvia_newGene_83200",0.003617439,0.000544916,-1.575748334,"up,down","--","--","--","--","[D]","Cell cycle control, cell division, chromosome partitioning ","--","S","Function unknown","PREDICTED: enzymatic polyprotein-like [Cicer arietinum]"]
["EVM0022203",0.001255966,0.00013874,1.248541407,"up","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1A-6 GN=R1A-6 OS=Solanum demissum (Wild potato) PE=3 SV=2","T","Signal transduction mechanisms","--"]
["EVM0006704",{"v":4.33e-15,"d":"4.33E-15"},{"v":2.16e-17,"d":"2.16E-17"},-4.227019327,"down","--","--","--","--","[R]","General function prediction only ","Pentatricopeptide repeat-containing protein At2g20710, mitochondrial (Precursor) GN=At2g20710 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","--"]
["EVM0025800",{"v":4.33e-15,"d":"4.33E-15"},{"v":2.16e-17,"d":"2.16E-17"},-4.227019327,"down","[Z]","Cytoskeleton ","Molecular Function: microtubule motor activity (GO:0003777);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: cytoplasm (GO:0005737);; Cellular Component: kinesin complex (GO:0005871);; Cellular Component: microtubule (GO:0005874);; Biological Process: microtubule-based movement (GO:0007018);; Molecular Function: microtubule binding (GO:0008017);; ","K10398|0|sot:102596275|125 kDa kinesin-related protein-like; K10398 kinesin family member 11 (A)","[Z]","Cytoskeleton ","125 kDa kinesin-related protein GN=TKRP125 OS=Nicotiana tabacum (Common tobacco) PE=1 SV=1","Z","Cytoskeleton","--"]
["EVM0022614",0.006008258,0.001082884,-3.873231793,"down","--","--","--","--","[R]","General function prediction only ","Pentatricopeptide repeat-containing protein At1g12300, mitochondrial (Precursor) GN=At1g12300 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","--"]
["EVM0009443",0.006008258,0.001082884,-3.873231793,"down","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0002823",{"v":4.69e-08,"d":"4.69E-08"},{"v":1.23e-09,"d":"1.23E-09"},2.255629445,"up","[R]","General function prediction only ","Biological Process: catabolic process (GO:0009056);; Molecular Function: hydrolase activity, acting on glycosyl bonds (GO:0016798);; Biological Process: macromolecule metabolic process (GO:0043170);; ","K01183|7.83126e-109|sita:101763181|endochitinase A-like; K01183 chitinase [EC:3.2.1.14] (A)","[R]","General function prediction only ","Endochitinase A (Precursor) OS=Zea mays (Maize) PE=1 SV=1","G","Carbohydrate transport and metabolism","--"]
["EVM0007341",0.006008258,0.001082884,-3.873231793,"down","[P]","Inorganic ion transport and metabolism ","Molecular Function: secondary active sulfate transmembrane transporter activity (GO:0008271);; Biological Process: sulfate transport (GO:0008272);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: transmembrane transport (GO:0055085);; ","K18059|0|tcc:TCM_042964|Sulfate transporter 4.1 isoform 1; K18059 sulfate transporter 4 (A)","[P]","Inorganic ion transport and metabolism ","Sulfate transporter 4.1, chloroplastic (Precursor) OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","P","Inorganic ion transport and metabolism","--"]
["EVM0010238",0.002108628,0.000251319,1.378487044,"up","--","--","Molecular Function: transferase activity (GO:0016740);; ","--","[R]","General function prediction only ","--","R","General function prediction only","--"]
["EVM0022963",0.006008258,0.001082884,-3.873231793,"down","--","--","--","--","[R]","General function prediction only ","Zinc finger protein ZAT9 GN=ZAT9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","--"]
["EVM0009136",0.006008258,0.001082884,-3.873231793,"down","[Z]","Cytoskeleton ","Biological Process: nuclear division (GO:0000280);; Biological Process: cytokinesis by cell plate formation (GO:0000911);; Molecular Function: microtubule motor activity (GO:0003777);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: kinesin complex (GO:0005871);; Cellular Component: microtubule (GO:0005874);; Biological Process: DNA replication initiation (GO:0006270);; Biological Process: regulation of DNA replication (GO:0006275);; Biological Process: DNA methylation (GO:0006306);; Biological Process: methylation-dependent chromatin silencing (GO:0006346);; Biological Process: microtubule-based movement (GO:0007018);; Molecular Function: microtubule binding (GO:0008017);; Biological Process: cell proliferation (GO:0008283);; Biological Process: regulation of flower development (GO:0009909);; Biological Process: regulation of G2/M transition of mitotic cell cycle (GO:0010389);; Biological Process: histone phosphorylation (GO:0016572);; Biological Process: chromatin silencing by small RNA (GO:0031048);; Biological Process: DNA endoreduplication (GO:0042023);; Biological Process: floral organ formation (GO:0048449);; Biological Process: spindle assembly (GO:0051225);; Biological Process: histone H3-K9 methylation (GO:0051567);; ","K11498|0|sot:102582775|centromere-associated protein E-like; K11498 centromeric protein E (A)","[Z]","Cytoskeleton ","Kinesin-like protein NACK2 GN=NACK2 OS=Nicotiana tabacum (Common tobacco) PE=1 SV=1","Z","Cytoskeleton","--"]
["EVM0006392",0.000859097,{"v":8.99e-05,"d":"8.99E-05"},1.605568787,"up","[RTKL]","--","Biological Process: activation of MAPKK activity (GO:0000186);; Molecular Function: MAP kinase kinase kinase activity (GO:0004709);; Molecular Function: phosphoprotein phosphatase activity (GO:0004721);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: 2-alkenal reductase [NAD(P)] activity (GO:0032440);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","--","--","Leucine-rich repeat receptor protein kinase EXS (Precursor) GN=T28J14.220 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","T","Signal transduction mechanisms","--"]
["EVM0010767",0.006340017,0.001206158,1.325876238,"up","--","--","Biological Process: cellular process (GO:0009987);; ","--","[K]","Transcription ","Agamous-like MADS-box protein AGL61 GN=F27C12.24 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","K","Transcription","--"]
["EVM0023728",0.006008258,0.001082884,-3.873231793,"down","--","--","--","--","--","--","F-box/LRR-repeat protein At3g03360 GN=At3g03360 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","R","General function prediction only","--"]
["EVM0024854",{"v":1.77e-07,"d":"1.77E-07"},{"v":6.8e-09,"d":"6.80E-09"},1.982657973,"up","--","--","--","K16282|7.35995e-55|sly:101246418|probable E3 ubiquitin-protein ligase XERICO; K16282 E3 ubiquitin-protein ligase RHA2 [EC:6.3.2.19] (A)","[O]","Posttranslational modification, protein turnover, chaperones ","Probable E3 ubiquitin-protein ligase RHA2B GN=RHA2B OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0021010",{"v":9.26e-06,"d":"9.26E-06"},{"v":5.92e-07,"d":"5.92E-07"},2.146060612,"up","--","--","--","--","--","--","F-box/kelch-repeat protein At3g06240 GN=At3g06240 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","--","--","--"]
["EVM0000914",0.006340017,0.001203061,1.325876238,"up","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Molecular Function: iron ion binding (GO:0005506);; Molecular Function: electron carrier activity (GO:0009055);; Molecular Function: oxygen binding (GO:0019825);; Molecular Function: heme binding (GO:0020037);; Molecular Function: flavonoid 3',5'-hydroxylase activity (GO:0033772);; Biological Process: medium-chain fatty acid biosynthetic process (GO:0051792);; Biological Process: oxidation-reduction process (GO:0055114);; Biological Process: sporopollenin biosynthetic process (GO:0080110);; ","--","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Cytochrome P450 703A2 GN=CYP703A2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","--"]
["EVM0011464",0.000870664,{"v":9.36e-05,"d":"9.36E-05"},-1.307666533,"down","--","--","Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Cellular Component: cytoplasmic part (GO:0044444);; ","--","--","--","Protein AUXIN RESPONSE 4 GN=AXR4 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","--"]
["EVM0005440",0.00084516,{"v":8.6e-05,"d":"8.60E-05"},-1.53399087,"down","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: amidase activity (GO:0004040);; Cellular Component: vacuolar membrane (GO:0005774);; Cellular Component: endoplasmic reticulum (GO:0005783);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: plasma membrane (GO:0005886);; Molecular Function: transferase activity (GO:0016740);; Molecular Function: carbon-nitrogen ligase activity, with glutamine as amido-N-donor (GO:0016884);; Biological Process: defense response to bacterium (GO:0042742);; Molecular Function: N-(long-chain-acyl)ethanolamine deacylase activity (GO:0047412);; Biological Process: N-acylethanolamine metabolic process (GO:0070291);; ","--","[J]","Translation, ribosomal structure and biogenesis ","Fatty acid amide hydrolase GN=FAAH OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","J","Translation, ribosomal structure and biogenesis","--"]
["EVM0010346",0.00084516,{"v":8.6e-05,"d":"8.60E-05"},-1.53399087,"down","--","--","Molecular Function: binding (GO:0005488);; Biological Process: nitrogen compound metabolic process (GO:0006807);; Biological Process: cellular metabolic process (GO:0044237);; Biological Process: primary metabolic process (GO:0044238);; Biological Process: organic substance metabolic process (GO:0071704);; ","--","[R]","General function prediction only ","Endonuclease OS=Nicotiana tabacum (Common tobacco) PE=2 SV=1","R","General function prediction only","--"]
["EVM0011486",0.001255966,0.00013874,1.248541407,"up","[G]","Carbohydrate transport and metabolism ","Biological Process: glucan biosynthetic process (GO:0009250);; Cellular Component: plastid (GO:0009536);; Molecular Function: transferase activity, transferring glycosyl groups (GO:0016757);; ","--","--","--","Soluble starch synthase 3, chloroplastic/amyloplastic (Precursor) GN=SS3 OS=Solanum tuberosum (Potato) PE=1 SV=1","M","Cell wall/membrane/envelope biogenesis","--"]
["EVM0004585",0.00084516,{"v":8.6e-05,"d":"8.60E-05"},-1.53399087,"down","--","--","Biological Process: metabolic process (GO:0008152);; Cellular Component: membrane (GO:0016020);; Molecular Function: transferase activity, transferring glycosyl groups (GO:0016757);; ","--","[GMW]","--","Xyloglucan galactosyltransferase KATAMARI1 homolog OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","W","Extracellular structures","--"]
["EVM0010649",{"v":9.26e-06,"d":"9.26E-06"},{"v":5.92e-07,"d":"5.92E-07"},2.146060612,"up","[P]","Inorganic ion transport and metabolism ","--","K01537|0|sot:102589419|calcium-transporting ATPase 2, plasma membrane-type-like; K01537 Ca2+-transporting ATPase [EC:3.6.3.8] (A)","[P]","Inorganic ion transport and metabolism ","Calcium-transporting ATPase 2, plasma membrane-type GN=ACA2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","P","Inorganic ion transport and metabolism","--"]
["EVM0021799",0.0048876,0.00083828,1.08721942,"up","[EH]","--","Molecular Function: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor (GO:0016671);; Biological Process: sulfate reduction (GO:0019419);; Biological Process: cell redox homeostasis (GO:0045454);; ","K05907|0|sly:544267|adenylyl-sulfate reductase; K05907 adenylyl-sulfate reductase (glutathione) [EC:1.8.4.9] (A)","[E]","Amino acid transport and metabolism ","5&apos;-adenylylsulfate reductase 1, chloroplastic (Precursor) GN=F4H6.13 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","E","Amino acid transport and metabolism","--"]
["EVM0013694",0.006008258,0.001082884,-3.873231793,"down","--","--","--","--","--","--","--","R","General function prediction only","--"]
["EVM0003503",0.003350436,0.000486982,-1.819323946,"down","--","--","--","--","--","--","Protein trichome birefringence-like 18 GN=TBL18 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","--"]
["EVM0011164",0.001435248,0.000164806,1.255222109,"up","--","--","Cellular Component: exocyst (GO:0000145);; Biological Process: exocytosis (GO:0006887);; ","K07195|0|sot:102582255|exocyst complex protein exo70-like; K07195 exocyst complex component 7 (A)","[U]","Intracellular trafficking, secretion, and vesicular transport ","Exocyst complex component EXO70A1 GN=EXO70A1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","--"]
["EVM0001525",{"v":4.33e-15,"d":"4.33E-15"},{"v":3.83e-17,"d":"3.83E-17"},3.394700436,"up","--","--","--","--","--","--","Uncharacterized protein At5g41620 GN=At5g41620 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","S","Function unknown","--"]
["EVM0023031",0.00084516,{"v":8.6e-05,"d":"8.60E-05"},-1.53399087,"down","--","--","--","--","--","--","Protein NLP9 GN=NLP9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","K","Transcription","--"]
["EVM0003997",{"v":4.69e-08,"d":"4.69E-08"},{"v":1.23e-09,"d":"1.23E-09"},2.255629445,"up","--","--","--","--","--","--","Uncharacterized GPI-anchored protein At1g61900 (Precursor) GN=At1g61900 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","R","General function prediction only","--"]
["EVM0019844",0.006340017,0.001203061,1.325876238,"up","[RTKL]","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","Serine/threonine-protein kinase BRI1-like 1 (Precursor) GN=BRL1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","T","Signal transduction mechanisms","--"]
["EVM0022375",0.0048876,0.00083828,1.08721942,"up","--","--","--","--","--","--","Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 GN=At3g12810 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","R","General function prediction only","--"]
["EVM0014315",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1A-6 GN=R1A-6 OS=Solanum demissum (Wild potato) PE=3 SV=2","T","Signal transduction mechanisms","--"]
["EVM0024837",0.000859097,{"v":8.99e-05,"d":"8.99E-05"},1.605568787,"up","--","--","--","--","--","--","--","R","General function prediction only","--"]
["Salvia_newGene_64325",0.004768769,0.00077779,-1.30029997,"down","--","--","Molecular Function: DNA binding (GO:0003677);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","--","K","Transcription","unnamed protein product [Coffea canephora]"]
["Salvia_newGene_81182",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1A-6 GN=R1A-6 OS=Solanum demissum (Wild potato) PE=3 SV=2","T","Signal transduction mechanisms","hypothetical protein MIMGU_mgv1a001470mg [Erythranthe guttata]"]
["EVM0005926",0.003617439,0.000544916,-1.575748334,"up,down","[K]","Transcription ","Molecular Function: DNA binding (GO:0003677);; ","--","[K]","Transcription ","Homeobox-leucine zipper protein ATHB-7 GN=ATHB-7 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","K","Transcription","--"]
["Salvia_newGene_29496",{"v":4.33e-15,"d":"4.33E-15"},{"v":2.16e-17,"d":"2.16E-17"},-4.227019327,"down","--","--","Molecular Function: RNA binding (GO:0003723);; Molecular Function: RNA-directed DNA polymerase activity (GO:0003964);; Biological Process: RNA-dependent DNA replication (GO:0006278);; ","--","--","--","--","S","Function unknown","hypothetical protein MIMGU_mgv1a020753mg, partial [Erythranthe guttata]"]
["EVM0006947",0.006008258,0.001082884,1.325876238,"up,down","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Molecular Function: monooxygenase activity (GO:0004497);; Molecular Function: iron ion binding (GO:0005506);; Molecular Function: electron carrier activity (GO:0009055);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705);; Molecular Function: heme binding (GO:0020037);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","[QI]","--","Cytochrome P450 CYP72A219 OS=Panax ginseng (Korean ginseng) PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","--"]
["EVM0013526",0.00280583,0.000350729,1.891294437,"up","[E]","Amino acid transport and metabolism ","Molecular Function: iron ion binding (GO:0005506);; Biological Process: gluconeogenesis (GO:0006094);; Biological Process: glycolytic process (GO:0006096);; Biological Process: glutamate biosynthetic process (GO:0006537);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: response to salt stress (GO:0009651);; Molecular Function: FMN binding (GO:0010181);; Molecular Function: glutamate synthase (NADH) activity (GO:0016040);; Biological Process: ammonia assimilation cycle (GO:0019676);; Biological Process: nitrate assimilation (GO:0042128);; Biological Process: developmental growth (GO:0048589);; Molecular Function: flavin adenine dinucleotide binding (GO:0050660);; Molecular Function: iron-sulfur cluster binding (GO:0051536);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00264|0|sot:102580516|glutamate synthase 1 [NADH], chloroplastic-like; K00264 glutamate synthase (NADPH/NADH) [EC:1.4.1.13 1.4.1.14] (A)","[E]","Amino acid transport and metabolism ","Glutamate synthase 1 [NADH], chloroplastic (Precursor) GN=GLT1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","E","Amino acid transport and metabolism","--"]
["EVM0010438",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Late blight resistance protein R1-A GN=R1A OS=Solanum demissum (Wild potato) PE=3 SV=1","T","Signal transduction mechanisms","--"]
["EVM0006302",0.001435248,0.000166889,-1.36648412,"down","[D]","Cell cycle control, cell division, chromosome partitioning ","Biological Process: regulation of cyclin-dependent protein serine/threonine kinase activity (GO:0000079);; Cellular Component: nucleus (GO:0005634);; Molecular Function: protein kinase binding (GO:0019901);; Biological Process: cell division (GO:0051301);; ","K05868|0|tcc:TCM_034388|Cyclin B2,3 isoform 1; K05868 cyclin B (A)","[D]","Cell cycle control, cell division, chromosome partitioning ","Cyclin-B2-4 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","D","Cell cycle control, cell division, chromosome partitioning","--"]
["EVM0010360",0.006008258,0.001082884,-3.873231793,"down","[K]","Transcription ","--","--","[K]","Transcription ","Zinc finger CCCH domain-containing protein 19 GN=F16F14 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=3","K","Transcription","--"]
["EVM0007372",0.006340017,0.001206158,1.325876238,"up","[O]","Posttranslational modification, protein turnover, chaperones ","--","--","--","--","Chaperone protein dnaJ 49 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0023297",{"v":6.97e-07,"d":"6.97E-07"},{"v":3.45e-08,"d":"3.45E-08"},-3.330263518,"down","--","--","Molecular Function: transferase activity, transferring phosphorus-containing groups (GO:0016772);; ","--","--","--","L-type lectin-domain containing receptor kinase S.1 (Precursor) GN=LECRKS1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","T","Signal transduction mechanisms","--"]
["Salvia_newGene_64370",0.006008258,0.001082884,-3.873231793,"down","[RTKL]","--","--","--","[R]","General function prediction only ","Pentatricopeptide repeat-containing protein At1g12620 GN=At1g12620 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like [Sesamum indicum]"]
["EVM0020589",{"v":4.33e-15,"d":"4.33E-15"},{"v":3.83e-17,"d":"3.83E-17"},3.394700436,"up","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0021528",0.006340017,0.001206158,1.325876238,"up","--","--","--","--","--","--","Probable S-adenosylmethionine-dependent methyltransferase At5g37970 GN=At5g37970 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1","S","Function unknown","--"]
["EVM0003920",0.006008258,0.001082884,-3.873231793,"down","--","--","Molecular Function: metal ion binding (GO:0046872);; ","--","[O]","Posttranslational modification, protein turnover, chaperones ","E3 ubiquitin ligase BIG BROTHER-related GN=BBR OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0006774",0.000859097,{"v":8.99e-05,"d":"8.99E-05"},1.605568787,"up","[R]","General function prediction only ","Biological Process: syncytium formation (GO:0006949);; Biological Process: metabolic process (GO:0008152);; Molecular Function: phosphoglycolate phosphatase activity (GO:0008967);; ","--","--","--","Haloacid dehalogenase-like hydrolase domain-containing protein At2g33255 GN=At2g33255 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","--"]
["Salvia_newGene_64206",0.006008258,0.001082884,-3.873231793,"down","--","--","--","--","[R]","General function prediction only ","Pentatricopeptide repeat-containing protein At1g12620 GN=At1g12620 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","hypothetical protein MIMGU_mgv1a017958mg [Erythranthe guttata]"]
["EVM0004566",0.00084516,{"v":8.6e-05,"d":"8.60E-05"},-1.53399087,"down","[R]","General function prediction only ","Molecular Function: GTPase activity (GO:0003924);; Molecular Function: GTP binding (GO:0005525);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: GTP catabolic process (GO:0006184);; Biological Process: rRNA processing (GO:0006364);; Biological Process: tRNA metabolic process (GO:0006399);; Biological Process: phosphatidylglycerol biosynthetic process (GO:0006655);; Biological Process: nitric oxide biosynthetic process (GO:0006809);; Biological Process: endocytosis (GO:0006897);; Biological Process: response to salt stress (GO:0009651);; Biological Process: embryo development ending in seed dormancy (GO:0009793);; Biological Process: chloroplast relocation (GO:0009902);; Biological Process: leaf morphogenesis (GO:0009965);; Biological Process: thylakoid membrane organization (GO:0010027);; Biological Process: response to ozone (GO:0010193);; Biological Process: vegetative to reproductive phase transition of meristem (GO:0010228);; Biological Process: regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway (GO:0010322);; Biological Process: iron-sulfur cluster assembly (GO:0016226);; Biological Process: cell differentiation (GO:0030154);; Biological Process: transcription from plastid promoter (GO:0042793);; Biological Process: positive regulation of transcription, DNA-templated (GO:0045893);; Biological Process: ovule development (GO:0048481);; Biological Process: regulation of protein metabolic process (GO:0051246);; ","K13427|0|sly:778272|NOS1; putative nitric oxide synthase; K13427 nitric-oxide synthase, plant [EC:1.14.13.39] (A)","[R]","General function prediction only ","NO-associated protein 1, chloroplastic/mitochondrial (Precursor) GN=T21L8.200 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","H","Coenzyme transport and metabolism","--"]
["Salvia_newGene_31548",0.006008258,0.001082884,-3.873231793,"down","--","--","--","K14773|6.5961e-07|rcu:RCOM_0657470|rRNA-processing protein UTP23, putative; K14773 U3 small nucleolar RNA-associated protein 23 (A)","--","--","--","--","--","unnamed protein product [Coffea canephora]"]
["EVM0025419",0.006008258,0.001082884,-3.873231793,"down","[R]","General function prediction only ","Molecular Function: zinc ion binding (GO:0008270);; ","K06874|0|cit:102629443|zinc finger protein ZPR1-like; K06874 zinc finger protein (A)","[R]","General function prediction only ","--","R","General function prediction only","--"]
["EVM0007716",{"v":1.22e-05,"d":"1.22E-05"},{"v":8.49e-07,"d":"8.49E-07"},1.873541896,"up","[T]","Signal transduction mechanisms ","Molecular Function: signal transducer activity (GO:0004871);; Molecular Function: scavenger receptor activity (GO:0005044);; Biological Process: signal transduction (GO:0007165);; Cellular Component: membrane (GO:0016020);; ","K12115|0|rcu:RCOM_0545900|hypothetical protein; K12115 clock-associated PAS protein ZTL (A)","--","--","Adagio protein 1 GN=MSF19.2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","R","General function prediction only","--"]
["EVM0026048",{"v":4.33e-15,"d":"4.33E-15"},{"v":2.16e-17,"d":"2.16E-17"},-4.227019327,"down","--","--","--","--","--","--","FBD-associated F-box protein At1g66310 GN=At1g66310 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","--","--","--"]
["EVM0002101",0.002108628,0.000251319,1.378487044,"up","[U]","Intracellular trafficking, secretion, and vesicular transport ","Biological Process: protein transport (GO:0015031);; Cellular Component: membrane (GO:0016020);; ","K10956|0|mus:103991311|protein transport protein Sec61 subunit alpha-like; K10956 protein transport protein SEC61 subunit alpha (A)","[UO]","--","Protein transport protein Sec61 subunit alpha OS=Pyrenomonas salina PE=2 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","--"]
["EVM0023895",0.006340017,0.001206158,1.325876238,"up","--","--","--","--","[R]","General function prediction only ","--","R","General function prediction only","--"]
["EVM0013421",0.00280583,0.000350729,1.891294437,"up","--","--","Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleus (GO:0005634);; ","--","--","--","Squamosa promoter-binding-like protein 3 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","K","Transcription","--"]
["EVM0012918",{"v":4.33e-15,"d":"4.33E-15"},{"v":2.16e-17,"d":"2.16E-17"},-4.227019327,"down","--","--","--","--","--","--","--","R","General function prediction only","--"]
["EVM0000592",0.006008258,0.001082884,-3.873231793,"down","--","--","Cellular Component: plant-type cell wall (GO:0009505);; Cellular Component: chloroplast stroma (GO:0009570);; ","--","--","--","--","S","Function unknown","--"]
["Salvia_newGene_81261",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1B-17 GN=R1B-17 OS=Solanum demissum (Wild potato) PE=3 SV=1","T","Signal transduction mechanisms","hypothetical protein MIMGU_mgv1a024375mg, partial [Erythranthe guttata]"]
["EVM0018588",0.0048876,0.00083828,1.08721942,"up","[R]","General function prediction only ","Molecular Function: nucleic acid binding (GO:0003676);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: nucleolus (GO:0005730);; Molecular Function: ATP-dependent helicase activity (GO:0008026);; Cellular Component: membrane (GO:0016020);; ","K12854|0|sly:101255504|SNRNP200; U5 small nuclear ribonucleoprotein 200 kDa helicase; K12854 pre-mRNA-splicing helicase BRR2 [EC:3.6.4.13] (A)","[A]","RNA processing and modification ","Helicase and polymerase-containing protein TEBICHI GN=TEB OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","A","RNA processing and modification","--"]
["Salvia_newGene_32424",0.00280583,0.000350729,1.891294437,"up","--","--","--","--","--","--","--","R","General function prediction only","PREDICTED: uncharacterized protein LOC104881605, partial [Vitis vinifera]"]
["EVM0011550",{"v":4.33e-15,"d":"4.33E-15"},{"v":2.16e-17,"d":"2.16E-17"},-4.227019327,"down","[QR]","--","Biological Process: metabolic process (GO:0008152);; ","K10770|1.94559e-148|sly:101263510|alkylated DNA repair protein alkB homolog 8; K10770 alkylated DNA repair protein alkB homolog 8 [EC:1.14.11.- 2.1.1.229] (A)","[R]","General function prediction only ","--","R","General function prediction only","--"]
["EVM0006800",0.003617439,0.000544916,-1.575748334,"up,down","--","--","Molecular Function: calmodulin binding (GO:0005516);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: defense response (GO:0006952);; Biological Process: cell death (GO:0008219);; Cellular Component: integral component of membrane (GO:0016021);; ","K08472|0|tcc:TCM_041068|MLO, putative; K08472 mlo protein (A)","--","--","MLO-like protein 3 GN=MLO3 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","--"]
["EVM0011850",0.001255966,0.00013874,1.248541407,"up","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1A-6 GN=R1A-6 OS=Solanum demissum (Wild potato) PE=3 SV=2","T","Signal transduction mechanisms","--"]
["EVM0006364",{"v":6.97e-07,"d":"6.97E-07"},{"v":3.45e-08,"d":"3.45E-08"},-3.330263518,"down","[J]","Translation, ribosomal structure and biogenesis ","--","K14565|0|sly:101255995|probable nucleolar protein 5-2; K14565 nucleolar protein 58 (A)","[AJ]","--","Probable nucleolar protein 5-1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","J","Translation, ribosomal structure and biogenesis","--"]
["EVM0003242",{"v":4.33e-15,"d":"4.33E-15"},{"v":2.16e-17,"d":"2.16E-17"},-4.227019327,"down","[K]","Transcription ","--","K11592|0|sot:102595284|endoribonuclease Dicer homolog 3a-like; K11592 endoribonuclease Dicer [EC:3.1.26.-] (A)","[A]","RNA processing and modification ","Endoribonuclease Dicer homolog 3b GN=OSJNBa0029C15.23 OS=Oryza sativa subsp. japonica (Rice) PE=3 SV=2","A","RNA processing and modification","--"]
["EVM0018643",0.000859097,{"v":8.99e-05,"d":"8.99E-05"},1.605568787,"up","[E]","Amino acid transport and metabolism ","--","--","[R]","General function prediction only ","Protein HOTHEAD (Precursor) GN=F3N23.17 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","E","Amino acid transport and metabolism","--"]
["EVM0007176",0.006008258,0.001082884,-3.873231793,"down","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: tRNA binding (GO:0000049);; Molecular Function: glutamate-tRNA ligase activity (GO:0004818);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: glutamyl-tRNA aminoacylation (GO:0006424);; Biological Process: mitochondrion organization (GO:0007005);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: chloroplast organization (GO:0009658);; Biological Process: ovule development (GO:0048481);; ","K01885|0|tcc:TCM_007599|Glutamate tRNA synthetase; K01885 glutamyl-tRNA synthetase [EC:6.1.1.17] (A)","[J]","Translation, ribosomal structure and biogenesis ","Glutamate--tRNA ligase, chloroplastic/mitochondrial (Precursor) GN=At5g64050 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","J","Translation, ribosomal structure and biogenesis","--"]
["EVM0005417",{"v":4.69e-08,"d":"4.69E-08"},{"v":1.23e-09,"d":"1.23E-09"},2.255629445,"up","[R]","General function prediction only ","Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: plastoglobule (GO:0010287);; ","--","[R]","General function prediction only ","Uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic (Precursor) GN=At1g79600 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","--"]
["Salvia_newGene_64205",0.006008258,0.001082884,-3.873231793,"down","--","--","--","--","[R]","General function prediction only ","Pentatricopeptide repeat-containing protein At1g12300, mitochondrial (Precursor) GN=At1g12300 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Sesamum indicum]"]
["EVM0002493",0.000870664,{"v":9.36e-05,"d":"9.36E-05"},-1.307666533,"down","[S]","Function unknown ","--","--","[T]","Signal transduction mechanisms ","Putative disease resistance protein RGA3 GN=RGA3 OS=Solanum bulbocastanum (Wild potato) PE=2 SV=2","T","Signal transduction mechanisms","--"]
["EVM0020376",0.000131541,{"v":1.15e-05,"d":"1.15E-05"},1.780467443,"up","[F]","Nucleotide transport and metabolism ","Biological Process: auxin biosynthetic process (GO:0009851);; Molecular Function: oxidoreductase activity (GO:0016491);; Molecular Function: metal ion binding (GO:0046872);; Molecular Function: iron-sulfur cluster binding (GO:0051536);; ","K09842|0|sot:102588119|abscisic-aldehyde oxidase-like; K09842 abscisic-aldehyde oxidase [EC:1.2.3.14] (A)","[F]","Nucleotide transport and metabolism ","Indole-3-acetaldehyde oxidase GN=F22J12.40 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","F","Nucleotide transport and metabolism","--"]
["EVM0012871",{"v":8.08e-06,"d":"8.08E-06"},{"v":4.7e-07,"d":"4.70E-07"},1.894718978,"up","[J]","Translation, ribosomal structure and biogenesis ","Biological Process: RNA methylation (GO:0001510);; Biological Process: pseudouridine synthesis (GO:0001522);; Molecular Function: RNA binding (GO:0003723);; Cellular Component: nucleolus (GO:0005730);; Cellular Component: cytosol (GO:0005829);; Biological Process: purine nucleotide biosynthetic process (GO:0006164);; Biological Process: RNA processing (GO:0006396);; Cellular Component: plasmodesma (GO:0009506);; Molecular Function: pseudouridine synthase activity (GO:0009982);; ","K11131|0|vvi:100258019|H/ACA ribonucleoprotein complex subunit 4; K11131 H/ACA ribonucleoprotein complex subunit 4 [EC:5.4.99.-] (A)","[J]","Translation, ribosomal structure and biogenesis ","H/ACA ribonucleoprotein complex subunit 4 GN=F24I3.230 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","J","Translation, ribosomal structure and biogenesis","--"]
["EVM0001779",{"v":4.33e-15,"d":"4.33E-15"},{"v":2.16e-17,"d":"2.16E-17"},-4.227019327,"down","[J]","Translation, ribosomal structure and biogenesis ","--","K10669|9.92874e-122|cmo:103483358|tRNA 2'-phosphotransferase 1; K10669 2'-phosphotransferase [EC:2.7.1.160] (A)","[J]","Translation, ribosomal structure and biogenesis ","--","J","Translation, ribosomal structure and biogenesis","--"]
["EVM0001335",0.001435248,0.000164806,1.255222109,"up","--","--","Molecular Function: ligase activity (GO:0016874);; ","--","[S]","Function unknown ","U-box domain-containing protein 2 GN=PUB2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","--"]
["EVM0016884",0.006008258,0.001082884,-3.873231793,"down","--","--","Biological Process: single-organism cellular process (GO:0044763);; ","K16732|0|sot:102606305|65-kDa microtubule-associated protein 3-like; K16732 protein regulator of cytokinesis 1 (A)","[DZ]","--","65-kDa microtubule-associated protein 3 GN=K17N15.15 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","Z","Cytoskeleton","--"]
["EVM0015008",0.004594858,0.000734643,1.289646579,"up","--","--","--","--","[R]","General function prediction only ","Receptor-like protein 12 (Precursor) GN=RLP12 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","R","General function prediction only","--"]
["EVM0017403",0.006705101,0.001353126,-1.606064416,"down","--","--","Molecular Function: nucleic acid binding (GO:0003676);; Molecular Function: ATP binding (GO:0005524);; Molecular Function: ATP-dependent helicase activity (GO:0008026);; ","K12815|0|vvi:100261447|pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16; K12815 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:3.6.4.13] (A)","[A]","RNA processing and modification ","Probable pre-mRNA-splicing factor ATP-dependent RNA helicase GN=At3g26560 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","A","RNA processing and modification","--"]
["EVM0025065",0.006008258,0.001082884,-3.873231793,"down","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0025582",{"v":4.33e-15,"d":"4.33E-15"},{"v":2.16e-17,"d":"2.16E-17"},-4.227019327,"down","--","--","--","--","--","--","Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase (Fragment) GN=SYM9 OS=Pisum sativum (Garden pea) PE=1 SV=2","S","Function unknown","--"]
["EVM0019731",{"v":4.33e-15,"d":"4.33E-15"},{"v":2.16e-17,"d":"2.16E-17"},-4.227019327,"down","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0001195",{"v":1.29e-07,"d":"1.29E-07"},{"v":4.11e-09,"d":"4.11E-09"},1.988011567,"up","--","--","Biological Process: rRNA processing (GO:0006364);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Biological Process: photosynthesis, light harvesting in photosystem I (GO:0009768);; Cellular Component: photosystem I antenna complex (GO:0009782);; Biological Process: thylakoid membrane organization (GO:0010027);; Biological Process: photosystem II assembly (GO:0010207);; Cellular Component: light-harvesting complex (GO:0030076);; Molecular Function: pigment binding (GO:0031409);; Molecular Function: metal ion binding (GO:0046872);; ","K08911|7.56094e-109|tcc:TCM_033843|Light-harvesting complex I protein Lhca5 isoform 1; K08911 light-harvesting complex I chlorophyll a/b binding protein 5 (A)","--","--","Chlorophyll a-b binding protein 4, chloroplastic (Precursor) GN=F1P2.20 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","R","General function prediction only","--"]
["EVM0008699",{"v":9.26e-06,"d":"9.26E-06"},{"v":5.92e-07,"d":"5.92E-07"},2.146060612,"up","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K09286|1.95288e-40|sly:101268529|ethylene-responsive transcription factor ERF011; K09286 EREBP-like factor (A)","--","--","Ethylene-responsive transcription factor ERF010 GN=ERF010 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","K","Transcription","--"]
["EVM0004502",{"v":1.48e-08,"d":"1.48E-08"},{"v":2.95e-10,"d":"2.95E-10"},-2.787631525,"down","[E]","Amino acid transport and metabolism ","Molecular Function: transporter activity (GO:0005215);; Biological Process: transport (GO:0006810);; Cellular Component: membrane (GO:0016020);; ","K14638|0|sot:102596266|peptide transporter PTR3-A-like; K14638 solute carrier family 15 (peptide/histidine transporter), member 3/4 (A)","[E]","Amino acid transport and metabolism ","Protein NRT1/ PTR FAMILY 5.2 GN=MCL19.10 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","P","Inorganic ion transport and metabolism","--"]
["Salvia_newGene_54785",0.006008258,0.001082884,-3.873231793,"down","--","--","--","--","[R]","General function prediction only ","Pentatricopeptide repeat-containing protein At1g12775, mitochondrial (Precursor) GN=At1g12775 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","PREDICTED: pentatricopeptide repeat-containing protein At1g62914, mitochondrial-like isoform X1 [Nelumbo nucifera]"]
["EVM0023122",0.0048876,0.00083828,1.08721942,"up","--","--","--","--","--","--","--","R","General function prediction only","--"]
["EVM0013617",0.006008258,0.001082884,-3.873231793,"down","[F]","Nucleotide transport and metabolism ","Biological Process: endonucleolytic cleavage involved in rRNA processing (GO:0000478);; Molecular Function: CTP synthase activity (GO:0003883);; Cellular Component: cytosol (GO:0005829);; Biological Process: pyrimidine nucleotide biosynthetic process (GO:0006221);; Biological Process: embryo development ending in seed dormancy (GO:0009793);; ","K01937|0|sot:102597065|CTP synthase 1-like; K01937 CTP synthase [EC:6.3.4.2] (A)","[F]","Nucleotide transport and metabolism ","--","F","Nucleotide transport and metabolism","--"]
["EVM0015716",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1B-16 GN=R1B-16 OS=Solanum demissum (Wild potato) PE=3 SV=1","T","Signal transduction mechanisms","--"]
["Salvia_newGene_89681",0.002108628,0.000251319,1.378487044,"up","[MG]","--","Biological Process: cellular metabolic process (GO:0044237);; Molecular Function: UDP-glucuronate decarboxylase activity (GO:0048040);; Molecular Function: coenzyme binding (GO:0050662);; ","--","[GM]","--","UDP-glucuronic acid decarboxylase 1 GN=UXS1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","G","Carbohydrate transport and metabolism","PREDICTED: sugar transport protein 1-like, partial [Cicer arietinum]"]
["EVM0026643",{"v":1.77e-07,"d":"1.77E-07"},{"v":6.8e-09,"d":"6.80E-09"},1.982657973,"up","[E]","Amino acid transport and metabolism ","--","K16297|0|sot:102587500|serine carboxypeptidase-like 33-like; K16297 serine carboxypeptidase-like clade II [EC:3.4.16.-] (A)","[OE]","--","Serine carboxypeptidase-like 33 (Precursor) GN=SCPL33 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0017988",{"v":1.77e-07,"d":"1.77E-07"},{"v":6.8e-09,"d":"6.80E-09"},1.982657973,"up","--","--","--","--","--","--","GDSL esterase/lipase At1g29670 (Precursor) GN=At1g29670 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","--"]
["EVM0018120",0.002108628,0.000251319,1.378487044,"up","--","--","Cellular Component: intracellular (GO:0005622);; ","--","--","--","Uncharacterized protein At5g19025 GN=At5g19025 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=3","S","Function unknown","--"]
["EVM0019134",0.00280583,0.000350729,1.891294437,"up","--","--","--","K17592|0|sot:102603537|sacsin-like; K17592 sacsin (A)","--","--","--","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0014472",0.004594858,0.000734643,1.289646579,"up","[V]","Defense mechanisms ","--","--","[R]","General function prediction only ","MATE efflux family protein 1 GN=F11M15.20 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","R","General function prediction only","--"]
["EVM0000441",0.000324905,{"v":3.02e-05,"d":"3.02E-05"},-1.149429571,"down","--","--","--","--","[T]","Signal transduction mechanisms ","Putative late blight resistance protein homolog R1B-8 GN=R1B-8 OS=Solanum demissum (Wild potato) PE=5 SV=1","T","Signal transduction mechanisms","--"]
["EVM0024438",0.006008258,0.001082884,-3.873231793,"down","--","--","Molecular Function: calcium ion binding (GO:0005509);; Cellular Component: integral component of membrane (GO:0016021);; ","K17800|0|rcu:RCOM_1076740|leucine zipper-ef-hand containing transmembrane protein, putative; K17800 LETM1 and EF-hand domain-containing protein 1, mitochondrial (A)","[S]","Function unknown ","--","S","Function unknown","--"]
["EVM0009110",0.00280583,0.000350729,1.891294437,"up","[S]","Function unknown ","--","--","[R]","General function prediction only ","CSC1-like protein RXW8 GN=RXW8 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","--"]
["Salvia_newGene_32",0.006008258,0.001082884,-3.873231793,"down","--","--","Biological Process: lipid transport (GO:0006869);; Molecular Function: lipid binding (GO:0008289);; ","--","--","--","Non-specific lipid-transfer protein 2 (Precursor) GN=LTP2 OS=Solanum pennellii (Tomato) PE=3 SV=1","T","Signal transduction mechanisms","lipid transfer protein 2 [Salvia miltiorrhiza]"]

{"sheet":"lncRNA_cis_Tar.annotation","index":1,"n_rows":305,"n_cols":24,"rows_kept":305,"flags":["formulas_cached_only"]}
["#ID","feature","L09_Count","L10_Count","L05_Count","L06_Count","L09_FPKM","L10_FPKM","L05_FPKM","L06_FPKM","FDR","log2FC","regulated","COG_class","COG_class_annotation","GO_annotation","KEGG_annotation","KEGG_pathway_annotation","KOG_class","KOG_class_annotation","Swiss-Prot_annotation","eggNOG_class","eggNOG_class_annotation","NR_annotation"]
["EVM0027528","lncRNA_target",5260,4587,5006,4484,18.070218,17.540735,17.054902,17.209573,0.958684390549163,-0.0684669413996601,"down","[R]","General function prediction only","Molecular Function: nucleotide binding (GO:0000166);; ","K06883|3.2425e-159|sot:102594964|GPN-loop GTPase 3 homolog UM01243-like; K06883 (A)","--","[K]","Transcription","--","K","Transcription","--"]
["EVM0012172","lncRNA_target",148345,140731,133585,126970,723.9104,729.191589,655.074707,690.982361,0.835089483898872,-0.164819338550686,"down","[G]","Carbohydrate transport and metabolism","Molecular Function: fructose-bisphosphate aldolase activity (GO:0004332);; Biological Process: glycolytic process (GO:0006096);; ","K01623|0|sot:102577842|uncharacterized LOC102577842; K01623 fructose-bisphosphate aldolase, class I [EC:4.1.2.13] (A)","Glycolysis / Gluconeogenesis (ko00010);; Pentose phosphate pathway (ko00030);; Fructose and mannose metabolism (ko00051);; Carbon fixation in photosynthetic organisms (ko00710);; Carbon metabolism (ko01200);; Biosynthesis of amino acids (ko01230)","[G]","Carbohydrate transport and metabolism","Fructose-bisphosphate aldolase cytoplasmic isozyme OS=Oryza sativa subsp. japonica (Rice) PE=1 SV=2","G","Carbohydrate transport and metabolism","--"]
["EVM0002758","lncRNA_target",377,357,458,429,1.367196,1.656277,1.614114,1.925758,0.893340060705942,0.257728542918198,"up","[Q]","Secondary metabolites biosynthesis, transport and catabolism","Biological Process: phenylpropanoid metabolic process (GO:0009698);; ","--","--","[Q]","Secondary metabolites biosynthesis, transport and catabolism","Laccase-14 (Precursor) GN=LAC14 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","--"]
["EVM0012890","lncRNA_target",3647,3700,3907,3584,21.399143,23.012815,22.914624,23.246034,0.998007575480397,0.0103618566148149,"up","[J]","Translation, ribosomal structure and biogenesis","Molecular Function: structural constituent of ribosome (GO:0003735);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: ribosome (GO:0005840);; Biological Process: tricarboxylic acid cycle (GO:0006099);; Biological Process: translation (GO:0006412);; Molecular Function: electron carrier activity (GO:0009055);; Cellular Component: chloroplast (GO:0009507);; Molecular Function: oxidoreductase activity (GO:0016491);; Molecular Function: rRNA binding (GO:0019843);; Biological Process: electron transport chain (GO:0022900);; Molecular Function: 2 iron, 2 sulfur cluster binding (GO:0051537);; ","K02954|8.41692e-44|mdm:103438814|ribosomal protein S14, mitochondrial; K02954 small subunit ribosomal protein S14 (A)","Ribosome (ko03010)","[J]","Translation, ribosomal structure and biogenesis","Ribosomal protein S14, mitochondrial GN=RPS14 OS=Vicia faba (Broad bean) PE=3 SV=2","C","Energy production and conversion","--"]
["EVM0006962","lncRNA_target",2959,2525,1208,1405,11.664891,10.568148,4.785125,6.176184,{"v":6.09545105064671e-05,"d":"6.10E-05"},-1.07522210687058,"down","[V]","Defense mechanisms","Biological Process: drug transmembrane transport (GO:0006855);; Molecular Function: drug transmembrane transporter activity (GO:0015238);; Molecular Function: antiporter activity (GO:0015297);; Cellular Component: membrane (GO:0016020);; ","K03327|0|mdm:103408287|MATE efflux family protein 5-like; K03327 multidrug resistance protein, MATE family (A)","--","[R]","General function prediction only","MATE efflux family protein 5 GN=F3L12.12 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1","S","Function unknown","--"]
["EVM0002752","lncRNA_target",842,716,839,749,4.959716,4.487589,4.92596,5.13652,0.998304286979862,0.0127527336398802,"up","[H]","Coenzyme transport and metabolism","Molecular Function: riboflavin kinase activity (GO:0008531);; Molecular Function: phosphoglycolate phosphatase activity (GO:0008967);; Biological Process: riboflavin biosynthetic process (GO:0009231);; Biological Process: phosphorylation (GO:0016310);; Molecular Function: nucleotidyltransferase activity (GO:0016779);; ","K00861|0|pmum:103329402|bifunctional riboflavin kinase/FMN phosphatase-like; K00861 riboflavin kinase [EC:2.7.1.26] (A)","Riboflavin metabolism (ko00740)","[H]","Coenzyme transport and metabolism","Riboflavin kinase GN=F18E5.90 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","H","Coenzyme transport and metabolism","--"]
["EVM0015960","lncRNA_target",1486,1549,1565,1387,10.381993,11.491405,10.987571,10.81172,0.981276267044764,-0.0594233962338613,"down","[R]","General function prediction only","--","K06130|2.82753e-141|vvi:100854352|uncharacterized LOC100854352; K06130 lysophospholipase II [EC:3.1.1.5] (A)","Glycerophospholipid metabolism (ko00564)","[I]","Lipid transport and metabolism","--","I","Lipid transport and metabolism","--"]
["EVM0002130","lncRNA_target",134,129,130,177,1.241577,1.272514,1.211159,1.824852,0.956201901180449,0.220216653731571,"up","--","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0024911","lncRNA_target",299,241,268,300,1.495055,1.278895,1.338302,1.670312,0.993599646695459,0.0671437008686055,"up","[R]","General function prediction only","Molecular Function: bile acid:sodium symporter activity (GO:0008508);; Cellular Component: chloroplast envelope (GO:0009941);; Cellular Component: membrane (GO:0016020);; Biological Process: sodium ion transmembrane transport (GO:0035725);; ","K03453|9.15533e-175|sot:102579409|probable sodium/metabolite cotransporter BASS3, chloroplastic-like; K03453 bile acid:Na+ symporter, BASS family (A)","--","[P]","Inorganic ion transport and metabolism","Probable sodium/metabolite cotransporter BASS3, chloroplastic (Precursor) GN=MWL2.2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","P","Inorganic ion transport and metabolism","--"]
["EVM0007067","lncRNA_target",10284,10524,10962,10078,50.393826,54.753826,53.979485,55.07135,1,-0.00175530788823857,"down","[KAD]","Transcription;; RNA processing and modification;; Cell cycle control, cell division, chromosome partitioning","--","K09422|4.83566e-86|vvi:100233128|SREBP; sucrose responsive element binding protein; K09422 myb proto-oncogene protein, plant (A)","--","[K]","Transcription","Transcription factor MYB44 GN=K8K14.2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","K","Transcription","--"]
["EVM0012998","lncRNA_target",10095,9817,11428,10236,67.848107,69.833427,76.2825,76.960485,0.899206380478931,0.104111505595619,"up","--","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0025799","lncRNA_target",905,952,312,696,2.78992,2.972347,1.019837,2.386074,0.308437469209502,-0.870783735996976,"down","--","--","Molecular Function: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity (GO:0003830);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: protein N-linked glycosylation (GO:0006487);; Biological Process: auxin-activated signaling pathway (GO:0009734);; Cellular Component: membrane (GO:0016020);; Molecular Function: protein dimerization activity (GO:0046983);; ","K00737|0|vvi:100254389|beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase; K00737 beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase [EC:2.4.1.144] (A)","N-Glycan biosynthesis (ko00510)","--","--","--","G","Carbohydrate transport and metabolism","--"]
["EVM0022075","lncRNA_target",31545,29191,29598,27569,43.830765,40.541707,39.300735,40.276383,0.894648749871412,-0.102489867993695,"down","--","--","--","K11718|0|sot:102605082|UDP-glucose:glycoprotein glucosyltransferase-like; K11718 UDP-glucose:glycoprotein glucosyltransferase [EC:2.4.1.-] (A)","Protein processing in endoplasmic reticulum (ko04141)","[G]","Carbohydrate transport and metabolism","UDP-glucose:glycoprotein glucosyltransferase (Precursor) OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","G","Carbohydrate transport and metabolism","--"]
["EVM0018361","lncRNA_target",291,320,444,440,0.80799,0.942801,1.238105,1.361122,0.604557952846717,0.516165678183761,"up","--","--","--","K13459|1.49049e-120|vvi:100258875|probable disease resistance protein At4g27220; K13459 disease resistance protein RPS2 (A)","Plant-pathogen interaction (ko04626)","[T]","Signal transduction mechanisms","Putative disease resistance protein At4g10780 GN=At4g10780 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1","T","Signal transduction mechanisms","--"]
["EVM0015376","lncRNA_target",9372,9162,7586,7177,56.152749,58.561919,45.891558,47.963402,0.214105833393495,-0.343957656175853,"down","--","--","--","--","--","[U]","Intracellular trafficking, secretion, and vesicular transport","Vesicle-associated protein 4-2 GN=PVA42 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","--"]
["EVM0015838","lncRNA_target",348,205,309,267,1.622011,1.01379,1.459981,1.391047,0.995874826054047,0.0506342137555894,"up","[R]","General function prediction only","Molecular Function: bile acid:sodium symporter activity (GO:0008508);; Cellular Component: chloroplast envelope (GO:0009941);; Cellular Component: membrane (GO:0016020);; Biological Process: sodium ion transmembrane transport (GO:0035725);; ","K03453|1.12053e-175|sot:102579409|probable sodium/metabolite cotransporter BASS3, chloroplastic-like; K03453 bile acid:Na+ symporter, BASS family (A)","--","[P]","Inorganic ion transport and metabolism","Probable sodium/metabolite cotransporter BASS3, chloroplastic (Precursor) GN=MWL2.2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","P","Inorganic ion transport and metabolism","--"]
["EVM0021204","lncRNA_target",1653,1547,2623,2236,6.224763,6.187169,9.928178,9.393289,0.0955857740507445,0.584158030794668,"up","[G]","Carbohydrate transport and metabolism","Cellular Component: membrane (GO:0016020);; Molecular Function: pectate lyase activity (GO:0030570);; ","K01728|0|pop:POPTR_0003s17450g|POPTRDRAFT_712008; pectate lyase family protein; K01728 pectate lyase [EC:4.2.2.2] (A)","Pentose and glucuronate interconversions (ko00040)","--","--","Probable pectate lyase 15 (Precursor) GN=At4g13710 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","--"]
["EVM0006470","lncRNA_target",19586,18691,18054,16513,41.595998,42.667711,38.559464,39.037849,0.746481600437239,-0.163499638987852,"down","--","--","--","--","--","--","--","--","R","General function prediction only","--"]
["EVM0011527","lncRNA_target",1464,1440,1382,1328,3.583762,3.77168,3.461318,3.648417,0.94329321515297,-0.115111702981094,"down","--","--","Molecular Function: ionotropic glutamate receptor activity (GO:0004970);; Molecular Function: extracellular-glutamate-gated ion channel activity (GO:0005234);; Biological Process: ion transport (GO:0006811);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: ionotropic glutamate receptor signaling pathway (GO:0035235);; ","K05387|0|rcu:RCOM_1386120|glutamate receptor 3 plant, putative; K05387 glutamate receptor, ionotropic, plant (A)","--","[PET]","Inorganic ion transport and metabolism;; Amino acid transport and metabolism;; Signal transduction mechanisms","Glutamate receptor 3.2 (Precursor) GN=F23E12.150 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","P","Inorganic ion transport and metabolism","--"]
["EVM0025553","lncRNA_target",3311,2900,3215,2595,11.478987,10.349271,11.329942,10.08248,0.92277604267444,-0.115165544267886,"down","[U]","Intracellular trafficking, secretion, and vesicular transport","Cellular Component: membrane (GO:0016020);; ","K03217|0|sot:102597369|ALBINO3-like protein 1, chloroplastic-like; K03217 YidC/Oxa1 family membrane protein insertase (A)","Protein export (ko03060)","[OU]","Posttranslational modification, protein turnover, chaperones;; Intracellular trafficking, secretion, and vesicular transport","ALBINO3-like protein 1, chloroplastic (Precursor) OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=3","U","Intracellular trafficking, secretion, and vesicular transport","--"]
["EVM0008402","lncRNA_target",9961,8730,10467,8381,12.46642,11.927298,14.564997,11.926104,0.998870617531194,-0.00709971288698104,"down","[KL]","Transcription;; Replication, recombination and repair","Molecular Function: DNA binding (GO:0003677);; Molecular Function: helicase activity (GO:0004386);; Molecular Function: ATP binding (GO:0005524);; ","K15192|0|sot:102591585|TATA-binding protein-associated factor BTAF1-like; K15192 TATA-binding protein-associated factor [EC:3.6.4.-] (A)","--","[K]","Transcription","TATA-binding protein-associated factor BTAF1 GN=F24B22.240 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","K","Transcription","--"]
["EVM0012996","lncRNA_target",2021,2011,2041,1831,5.203711,5.49625,5.289276,5.251677,0.966481173381655,-0.0764094237910011,"down","[O]","Posttranslational modification, protein turnover, chaperones","--","--","--","--","--","Chaperone protein dnaJ 49 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0027642","lncRNA_target",7806,7002,7566,6881,46.336639,44.1315,45.131557,45.549576,0.966759249366796,-0.0508805192748804,"down","--","--","--","--","--","--","--","F-box only protein 6 GN=FBX6 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","--"]
["EVM0000753","lncRNA_target",111,158,170,144,0.389156,0.613306,0.655727,0.759299,0.955479157312089,0.19552768164768,"up","[Z]","Cytoskeleton","Molecular Function: actin binding (GO:0003779);; Molecular Function: calcium ion binding (GO:0005509);; Biological Process: actin filament-based movement (GO:0030048);; Biological Process: Golgi localization (GO:0051645);; Biological Process: mitochondrion localization (GO:0051646);; Biological Process: peroxisome localization (GO:0060151);; ","--","--","[Z]","Cytoskeleton","Fimbrin-2 {ECO:0000305} OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","Z","Cytoskeleton","--"]
["EVM0020777","lncRNA_target",1388,1130,1167,1181,3.017774,2.599944,2.550185,2.862877,0.947601668329108,-0.110330282337492,"down","[O]","Posttranslational modification, protein turnover, chaperones","Cellular Component: nucleus (GO:0005634);; Biological Process: protein folding (GO:0006457);; ","K09506|2.60283e-170|sly:101256665|dnaJ homolog subfamily C member 21-like; K09506 DnaJ homolog subfamily A member 5 (A)","--","[O]","Posttranslational modification, protein turnover, chaperones","DnaJ protein homolog (Precursor) GN=DNAJ1 OS=Cucumis sativus (Cucumber) PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0006112","lncRNA_target",763,999,1695,948,3.162849,3.671456,4.951921,3.655924,0.695624327871138,0.545135165672463,"up","[RTKL]","General function prediction only;; Signal transduction mechanisms;; Transcription;; Replication, recombination and repair","Molecular Function: transferase activity, transferring phosphorus-containing groups (GO:0016772);; ","--","--","--","--","Probable LRR receptor-like serine/threonine-protein kinase At3g47570 (Precursor) GN=At3g47570 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","T","Signal transduction mechanisms","--"]
["EVM0011153","lncRNA_target",25496,23754,24856,23043,133.270386,131.836731,130.560394,134.321793,0.960108700588825,-0.0555591007000063,"down","[C]","Energy production and conversion","Cellular Component: mitochondrial inner membrane (GO:0005743);; Biological Process: ATP synthesis coupled proton transport (GO:0015986);; Cellular Component: proton-transporting ATP synthase complex, catalytic core F(1) (GO:0045261);; Molecular Function: proton-transporting ATP synthase activity, rotational mechanism (GO:0046933);; Molecular Function: proton-transporting ATPase activity, rotational mechanism (GO:0046961);; ","K02136|0|pmum:103338581|ATP synthase subunit gamma, mitochondrial; K02136 F-type H+-transporting ATPase subunit gamma (A)","Oxidative phosphorylation (ko00190)","[C]","Energy production and conversion","ATP synthase subunit gamma, mitochondrial (Precursor) GN=ATPC OS=Ipomoea batatas (Sweet potato) PE=1 SV=2","C","Energy production and conversion","--"]
["EVM0007427","lncRNA_target",594,441,608,807,3.080189,2.426119,3.170245,4.669815,0.693670294631951,0.452948170390801,"up","--","--","Molecular Function: pectate lyase activity (GO:0030570);; ","K01728|0|mdm:103425513|probable pectate lyase 5; K01728 pectate lyase [EC:4.2.2.2] (A)","Pentose and glucuronate interconversions (ko00040)","--","--","Probable pectate lyase 5 (Precursor) GN=At1g67750 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","G","Carbohydrate transport and metabolism","--"]
["EVM0002113","lncRNA_target",131,254,428,336,0.355917,0.734977,1.161622,1.089769,0.128409175706482,0.9522442015545,"up","--","--","Biological Process: DNA replication (GO:0006260);; Biological Process: chromatin silencing (GO:0006342);; Biological Process: transport (GO:0006810);; Biological Process: cell cycle (GO:0007049);; Biological Process: histone lysine methylation (GO:0034968);; ","--","--","--","--","Microtubule-associated protein TORTIFOLIA1 GN=T24A18.10 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","S","Function unknown","--"]
["EVM0021963","lncRNA_target",146,171,344,291,0.335953,0.35676,0.796861,0.63633,0.157033903211644,0.978732447281739,"up","--","--","Biological Process: DNA metabolic process (GO:0006259);; ","--","--","[D]","Cell cycle control, cell division, chromosome partitioning","--","D","Cell cycle control, cell division, chromosome partitioning","--"]
["EVM0000776","lncRNA_target",336,322,374,300,1.633614,1.680649,1.835189,1.637887,0.998007575480397,0.01362175714585,"up","[P]","Inorganic ion transport and metabolism","Biological Process: sulfur compound metabolic process (GO:0006790);; Molecular Function: 3'(2'),5'-bisphosphate nucleotidase activity (GO:0008441);; Cellular Component: chloroplast (GO:0009507);; Biological Process: phosphatidylinositol phosphorylation (GO:0046854);; ","K01082|0|sly:101251056|putative PAP-specific phosphatase, mitochondrial; K01082 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] (A)","Sulfur metabolism (ko00920)","[FP]","Nucleotide transport and metabolism;; Inorganic ion transport and metabolism","Putative PAP-specific phosphatase, mitochondrial (Precursor) GN=At4g05090 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","G","Carbohydrate transport and metabolism","--"]
["EVM0006983","lncRNA_target",4663,4292,4847,4317,19.765546,19.293245,20.641579,20.371858,0.996612349894431,0.0167292986316328,"up","[T]","Signal transduction mechanisms","Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);; Biological Process: protein dephosphorylation (GO:0006470);; Cellular Component: protein serine/threonine phosphatase complex (GO:0008287);; Molecular Function: metal ion binding (GO:0046872);; ","K01102|0|pvu:PHAVU_007G259900g|hypothetical protein; K01102 pyruvate dehydrogenase phosphatase [EC:3.1.3.43] (A)","--","[T]","Signal transduction mechanisms","Probable protein phosphatase 2C 43 OS=Oryza sativa subsp. japonica (Rice) PE=3 SV=2","T","Signal transduction mechanisms","--"]
["EVM0009510","lncRNA_target",2267,2248,1672,1455,8.111422,8.53886,6.301793,5.803108,0.147804723817191,-0.548917154853375,"down","--","--","Molecular Function: structural molecule activity (GO:0005198);; Biological Process: response to stress (GO:0006950);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Molecular Function: oxidoreductase activity (GO:0016491);; ","--","--","--","--","Light-induced protein, chloroplastic (Precursor) OS=Solanum tuberosum (Potato) PE=1 SV=2","S","Function unknown","--"]
["EVM0021569","lncRNA_target",5642,7893,4041,3352,18.15066,28.026286,16.5076,14.419641,0.162018474722,-0.900453854633054,"down","[RTKL]","General function prediction only;; Signal transduction mechanisms;; Transcription;; Replication, recombination and repair","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; ","--","--","[T]","Signal transduction mechanisms","Serine/threonine-protein kinase At5g01020 GN=At5g01020 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","T","Signal transduction mechanisms","--"]
["EVM0025112","lncRNA_target",925,995,1356,1028,3.929093,4.816643,5.533642,4.861023,0.755796491543228,0.286803792267171,"up","[R]","General function prediction only","--","--","--","[R]","General function prediction only","Transcription initiation factor TFIID subunit 5 GN=TAF5 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","R","General function prediction only","--"]
["EVM0017812","lncRNA_target",1563,531,347,617,3.223276,1.308239,0.862981,1.418722,0.752479186152313,-1.09273738141599,"down","[RTKL]","General function prediction only;; Signal transduction mechanisms;; Transcription;; Replication, recombination and repair","--","--","--","[T]","Signal transduction mechanisms","Receptor-like protein kinase FERONIA (Precursor) GN=F26O13.190 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","T","Signal transduction mechanisms","--"]
["EVM0018869","lncRNA_target",133803,130741,137559,123839,837.721435,869.280792,865.974533,865.16156,0.988262897917884,-0.034737063826468,"down","--","--","Cellular Component: extracellular region (GO:0005576);; Cellular Component: cell wall (GO:0005618);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: cytosol (GO:0005829);; Molecular Function: glycogenin glucosyltransferase activity (GO:0008466);; Cellular Component: plasmodesma (GO:0009506);; Cellular Component: membrane (GO:0016020);; Biological Process: cellulose biosynthetic process (GO:0030244);; Biological Process: UDP-L-arabinose metabolic process (GO:0033356);; Molecular Function: UDP-arabinopyranose mutase activity (GO:0052691);; Biological Process: cell wall organization (GO:0071555);; ","K13379|0|sot:102601908|RGP2, uptg2; alpha-1,4-glucan-protein synthase [UDP-forming] 2-like (EC:2.4.1.-); K13379 reversibly glycosylated polypeptide / UDP-arabinopyranose mutase [EC:2.4.1.- 5.4.99.30] (A)","--","--","--","Alpha-1,4-glucan-protein synthase [UDP-forming] 2 GN=UPTG2 OS=Solanum tuberosum (Potato) PE=1 SV=1","R","General function prediction only","--"]
["EVM0002668","lncRNA_target",3011,2726,2928,2494,18.695881,17.972679,18.269655,17.26642,0.941109368896457,-0.0992108632345034,"down","--","--","--","--","--","--","--","Peroxisome biogenesis protein 22 GN=PEX22 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","S","Function unknown","--"]
["EVM0020152","lncRNA_target",819,889,700,689,8.892029,9.769771,7.288764,8.152106,0.774629167273533,-0.314924490722756,"down","--","--","--","--","--","--","--","Guanine nucleotide-binding protein subunit gamma 1 (Precursor) GN=MAA21.50 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","S","Function unknown","--"]
["EVM0021365","lncRNA_target",3019,2693,3294,3043,16.974215,16.078905,18.615185,19.082085,0.904440383669422,0.135192334583412,"up","[R]","General function prediction only","Biological Process: photosystem II assembly (GO:0010207);; Biological Process: myo-inositol hexakisphosphate biosynthetic process (GO:0010264);; Molecular Function: hydrolase activity (GO:0016787);; ","--","--","--","--","--","S","Function unknown","--"]
["EVM0003338","lncRNA_target",847,853,1166,744,3.406108,3.711982,4.444359,3.377534,0.931605627094493,0.138168826462072,"up","--","--","--","--","--","--","--","Pentatricopeptide repeat-containing protein At3g46870 GN=At3g46870 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","R","General function prediction only","--"]
["EVM0009936","lncRNA_target",1943,1761,1875,1567,11.969382,11.517797,11.610889,10.767785,0.932690711317491,-0.124255944008295,"down","[GEPR]","Carbohydrate transport and metabolism;; Amino acid transport and metabolism;; Inorganic ion transport and metabolism;; General function prediction only","Molecular Function: inorganic phosphate transmembrane transporter activity (GO:0005315);; Molecular Function: sugar:proton symporter activity (GO:0005351);; Molecular Function: organic anion transmembrane transporter activity (GO:0008514);; Biological Process: nitrate transport (GO:0015706);; Biological Process: organic anion transport (GO:0015711);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: carbohydrate transmembrane transport (GO:0034219);; ","--","--","[G]","Carbohydrate transport and metabolism","Probable anion transporter 7 (Precursor) GN=PHT4;7 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","G","Carbohydrate transport and metabolism","--"]
["EVM0001541","lncRNA_target",272,276,793,742,1.403025,1.513743,4.116455,4.27634,0.000444270999254358,1.4690320558821,"up","--","--","Cellular Component: secondary cell wall (GO:0009531);; Biological Process: lignin metabolic process (GO:0009808);; Biological Process: cell wall modification involved in abscission (GO:0009830);; Biological Process: plant-type secondary cell wall biogenesis (GO:0009834);; Biological Process: cellulose microfibril organization (GO:0010215);; Biological Process: cell growth (GO:0016049);; Cellular Component: anchored component of membrane (GO:0031225);; ","--","--","--","--","COBRA-like protein 4 (Precursor) GN=COBL4 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","R","General function prediction only","--"]
["EVM0017293","lncRNA_target",10182,9852,13353,11861,65.496132,67.286102,86.312508,85.088593,0.256799052596959,0.3140451368064,"up","[R]","General function prediction only","Molecular Function: acid phosphatase activity (GO:0003993);; ","--","--","[O]","Posttranslational modification, protein turnover, chaperones","Purple acid phosphatase 4 (Precursor) GN=PAP4 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0002766","lncRNA_target",11254,10096,8496,8055,31.458377,31.0158,24.276275,25.963416,0.120360105136048,-0.381153547329052,"down","--","--","--","K15168|0|sot:102582320|mediator of RNA polymerase II transcription subunit 25-like; K15168 mediator of RNA polymerase II transcription subunit 25 (A)","--","--","--","Mediator of RNA polymerase II transcription subunit 25 GN=F2J7.4 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","K","Transcription","--"]
["EVM0005694","lncRNA_target",1437,1236,712,728,11.798629,10.769199,5.868515,6.661797,0.0150035593858251,-0.902703121049088,"down","--","--","--","--","--","--","--","Transcription factor IBH1 OS=Oryza sativa subsp. indica (Rice) PE=3 SV=1","K","Transcription","--"]
["EVM0007267","lncRNA_target",359,349,187,209,2.373779,2.448,1.243385,1.539398,0.234152356128843,-0.84813784148803,"down","--","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0020941","lncRNA_target",995,1043,935,1329,2.560759,2.730508,2.382445,3.800286,0.960838037414122,0.148355312425681,"up","[R]","General function prediction only","Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: plastoglobule (GO:0010287);; Biological Process: chlorophyll catabolic process (GO:0015996);; Biological Process: response to photooxidative stress (GO:0080183);; ","--","--","[R]","General function prediction only","Uncharacterized aarF domain-containing protein kinase At4g31390, chloroplastic (Precursor) GN=At4g31390 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","--"]
["EVM0025976","lncRNA_target",3702,3690,3779,3547,30.670788,32.456875,31.460188,32.771866,0.992336784552652,-0.0294035653973922,"down","--","--","--","--","--","--","--","Transcription factor bHLH143 GN=T5E8.260 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","--","--","--"]
["EVM0027741","lncRNA_target",3958,3196,3476,3462,4.54893,4.141835,3.866493,5.605251,0.967164158359961,-0.0540910228605338,"down","--","--","--","--","--","[R]","General function prediction only","Auxilin-related protein 2 GN=At4g12770 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0005973","lncRNA_target",630,876,731,626,2.246789,3.625392,2.79531,1.915226,0.928015234907214,-0.177064625329014,"down","--","--","--","--","--","[R]","General function prediction only","Pentatricopeptide repeat-containing protein At5g18390, mitochondrial (Precursor) GN=At5g18390 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","R","General function prediction only","--"]
["EVM0002296","lncRNA_target",1158,745,1343,952,1.574695,1.35053,1.836745,1.512755,0.871878736030429,0.253465292289126,"up","--","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0010272","lncRNA_target",11498,11081,9551,8613,27.945615,26.155196,22.124257,22.719026,0.227118902896488,-0.331019707953219,"down","[R]","General function prediction only","--","K15728|0|sot:102594429|phosphatidate phosphatase LPIN3-like; K15728 phosphatidate phosphatase LPIN [EC:3.1.3.4] (A)","Glycerolipid metabolism (ko00561);; Glycerophospholipid metabolism (ko00564)","[NI]","Cell motility;; Lipid transport and metabolism","Phosphatidate phosphatase PAH2 GN=PAH2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","I","Lipid transport and metabolism","--"]
["EVM0014971","lncRNA_target",1011,1012,721,708,4.524976,4.825722,3.215469,3.5778,0.391389913408014,-0.516482760224321,"down","--","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0014931","lncRNA_target",4211,4466,4269,4788,26.802138,30.127639,27.295381,33.916117,0.97787643737622,0.0501847990555491,"up","--","--","--","--","--","[K]","Transcription","GATA transcription factor 1 GN=GATA1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","K","Transcription","--"]
["EVM0023523","lncRNA_target",1870,1753,1036,969,11.72239,12.048938,6.744638,7.059969,0.00881510982944912,-0.868839418355163,"down","--","--","--","--","--","--","--","Protein trichome birefringence-like 41 GN=TBL41 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","--"]
["EVM0015150","lncRNA_target",1115,846,688,1182,3.062267,2.435333,2.051615,3.626517,0.989869794064162,-0.0587688194728478,"down","--","--","--","--","--","[T]","Signal transduction mechanisms","Putative late blight resistance protein homolog R1B-16 GN=R1B-16 OS=Solanum demissum (Wild potato) PE=3 SV=1","T","Signal transduction mechanisms","--"]
["EVM0011876","lncRNA_target",343,279,311,273,1.146057,1.115748,1.03102,1.013161,0.975042470161594,-0.10533557540191,"down","--","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0007751","lncRNA_target",167,128,105,132,0.689982,0.564067,0.436007,0.609174,0.907978402818867,-0.31656818086702,"down","--","--","--","--","--","[R]","General function prediction only","Pentatricopeptide repeat-containing protein At3g12770 GN=PCMP-H43 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","--"]
["EVM0013182","lncRNA_target",2926,2789,3006,2608,29.031078,29.382757,29.970476,28.857388,0.984959752903911,-0.043942656603075,"down","--","--","Cellular Component: mitochondrial inner membrane (GO:0005743);; Biological Process: glycolytic process (GO:0006096);; Biological Process: protein targeting to vacuole (GO:0006623);; Biological Process: mitochondrial pyruvate transport (GO:0006850);; Biological Process: aerobic respiration (GO:0009060);; Biological Process: response to cadmium ion (GO:0046686);; ","--","--","[S]","Function unknown","Mitochondrial pyruvate carrier 4 {ECO:0000305} OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1","S","Function unknown","--"]
["EVM0016667","lncRNA_target",5110,4226,5176,4519,15.412505,13.493999,15.695221,15.276188,0.98348147273486,0.0395031428766437,"up","--","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0004492","lncRNA_target",1507,1437,865,1179,7.917745,7.986744,4.508278,6.904009,0.245754368895504,-0.529099024238187,"down","[H]","Coenzyme transport and metabolism","--","--","--","[H]","Coenzyme transport and metabolism","Uroporphyrinogen-III C-methyltransferase GN=cobA OS=Cyanidium caldarium PE=3 SV=1","H","Coenzyme transport and metabolism","--"]
["EVM0012509","lncRNA_target",622,724,520,401,2.017489,2.369438,1.700329,1.408516,0.430422867619811,-0.57399592145687,"down","[J]","Translation, ribosomal structure and biogenesis","Biological Process: pseudouridine synthesis (GO:0001522);; Molecular Function: RNA binding (GO:0003723);; Biological Process: one-carbon metabolic process (GO:0006730);; Biological Process: tRNA processing (GO:0008033);; Molecular Function: pseudouridine synthase activity (GO:0009982);; ","K06173|1.18192e-157|sot:102600948|tRNA pseudouridine synthase-like 1-like; K06173 tRNA pseudouridine38-40 synthase [EC:5.4.99.12] (A)","--","[AJ]","RNA processing and modification;; Translation, ribosomal structure and biogenesis","Coronatine-insensitive protein 1 GN=T28M21.10 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","J","Translation, ribosomal structure and biogenesis","--"]
["EVM0001779","lncRNA_target",1039,975,1172,1083,4.64492,4.660419,5.278415,5.935689,0.928931939872683,0.147364921476162,"up","[J]","Translation, ribosomal structure and biogenesis","--","K10669|9.92874e-122|cmo:103483358|tRNA 2'-phosphotransferase 1; K10669 2'-phosphotransferase [EC:2.7.1.160] (A)","--","[J]","Translation, ribosomal structure and biogenesis","--","J","Translation, ribosomal structure and biogenesis","--"]
["EVM0018340","lncRNA_target",548,603,626,442,2.811408,3.289796,3.260845,2.517046,0.961735005888537,-0.136360140953271,"down","[J]","Translation, ribosomal structure and biogenesis","Biological Process: RNA modification (GO:0009451);; Molecular Function: isomerase activity (GO:0016853);; ","--","--","[J]","Translation, ribosomal structure and biogenesis","--","J","Translation, ribosomal structure and biogenesis","--"]
["EVM0013187","lncRNA_target",277,231,439,357,2.031772,1.716745,3.240473,2.939932,0.464633425915234,0.63037723183439,"up","--","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0000603","lncRNA_target",135,110,175,116,0.310866,0.268946,0.417288,0.337496,0.947076095210594,0.224219159042242,"up","--","--","--","--","--","--","--","--","R","General function prediction only","--"]
["EVM0015452","lncRNA_target",174,217,193,170,0.496085,0.631815,0.586207,0.706558,0.975397702476304,-0.130687316031898,"down","--","--","--","K07052|1.83362e-65|vvi:100265959|uncharacterized LOC100265959; K07052 (A)","--","--","--","--","S","Function unknown","--"]
["EVM0013270","lncRNA_target",4541,3817,3946,3410,8.021073,7.372222,7.071877,6.555702,0.763210799909274,-0.199873757568004,"down","--","--","Molecular Function: metal ion binding (GO:0046872);; ","K15601|0|sot:102601383|uncharacterized LOC102601383; K15601 lysine-specific demethylase 3 [EC:1.14.11.-] (A)","--","[K]","Transcription","Lysine-specific demethylase JMJ25 GN=MLP3.6 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","K","Transcription","--"]
["EVM0023168","lncRNA_target",167,25,65,145,0.269331,0.099956,0.152316,0.250974,0.997478372347324,0.173462113637006,"up","[S]","Function unknown","--","--","--","[S]","Function unknown","--","S","Function unknown","--"]
["EVM0014005","lncRNA_target",1002,1187,1192,1024,7.295114,9.172405,8.716102,8.310506,1,-0.0055676997579166,"down","--","--","--","K07018|1.56399e-103|cic:CICLE_v10016541mg|hypothetical protein; K07018 (A)","--","--","--","--","R","General function prediction only","--"]
["EVM0006940","lncRNA_target",10631,10309,12317,9717,134.244114,145.10242,164.079142,137.187337,0.961735005888537,0.0516038983353477,"up","[J]","Translation, ribosomal structure and biogenesis","Molecular Function: structural constituent of ribosome (GO:0003735);; Biological Process: translation (GO:0006412);; Cellular Component: cytosolic large ribosomal subunit (GO:0022625);; ","K02929|2.44835e-57|pxb:103944756|60S ribosomal protein L44-like; K02929 large subunit ribosomal protein L44e (A)","Ribosome (ko03010)","[J]","Translation, ribosomal structure and biogenesis","60S ribosomal protein L44 GN=RPL44 OS=Gossypium hirsutum (Upland cotton) PE=3 SV=3","J","Translation, ribosomal structure and biogenesis","--"]
["EVM0016065","lncRNA_target",6098,6154,6671,6500,36.671345,39.297516,40.314735,43.591225,0.930990694647734,0.0889096253640717,"up","[C]","Energy production and conversion","Molecular Function: potassium channel activity (GO:0005267);; Cellular Component: plasma membrane (GO:0005886);; Cellular Component: plasmodesma (GO:0009506);; Molecular Function: aryl-alcohol dehydrogenase (NADP+) activity (GO:0047681);; Biological Process: oxidation-reduction process (GO:0055114);; Biological Process: potassium ion transmembrane transport (GO:0071805);; ","--","--","[C]","Energy production and conversion","Probable voltage-gated potassium channel subunit beta GN=T1G11.6 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","C","Energy production and conversion","--"]
["EVM0016738","lncRNA_target",110,151,171,168,0.244909,0.629641,0.634405,0.567811,0.886470656532848,0.355494851835028,"up","--","--","Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Biological Process: leaf morphogenesis (GO:0009965);; Biological Process: cell differentiation (GO:0030154);; Biological Process: positive regulation of transcription, DNA-templated (GO:0045893);; ","--","--","--","--","--","S","Function unknown","--"]
["EVM0009991","lncRNA_target",1361,1227,1287,1175,9.622553,9.311933,9.217186,9.308828,0.964887965714723,-0.087256291073211,"down","--","--","Cellular Component: plasma membrane (GO:0005886);; ","--","--","[S]","Function unknown","DeSI-like protein At4g17486 GN=At4g17486 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","--"]
["EVM0012534","lncRNA_target",2545,2209,2131,2249,16.641676,15.339403,14.00473,16.395435,0.914819230961459,-0.127624549825213,"down","[R]","General function prediction only","Molecular Function: RNA binding (GO:0003723);; Molecular Function: copper ion binding (GO:0005507);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: protein targeting to mitochondrion (GO:0006626);; Biological Process: pyrimidine ribonucleotide biosynthetic process (GO:0009220);; Biological Process: regulation of flower development (GO:0009909);; Biological Process: vegetative to reproductive phase transition of meristem (GO:0010228);; Biological Process: histone lysine methylation (GO:0034968);; ","K12741|7.45362e-42|vvi:100256940|glycine-rich RNA-binding protein blt801; K12741 heterogeneous nuclear ribonucleoprotein A1/A3 (A)","Spliceosome (ko03040)","[R]","General function prediction only","Glycine-rich RNA-binding protein 3, mitochondrial (Precursor) GN=MAF19_30 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","--"]
["EVM0005924","lncRNA_target",510,578,704,639,2.423451,3.094359,3.590931,3.623407,0.833636643076803,0.28338152380119,"up","--","--","--","--","--","--","--","Membrane-anchored ubiquitin-fold protein 4 (Precursor) GN=MUB4 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0020002","lncRNA_target",2601,2649,2111,2167,42.968517,46.454315,35.043587,39.919601,0.587509439449562,-0.309212116785644,"down","--","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0011931","lncRNA_target",301,273,307,316,2.687468,2.593654,2.644172,3.070004,0.977759133978074,0.106953952469968,"up","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: protein dimerization activity (GO:0046983);; ","--","--","[K]","Transcription","MADS-box protein FLOWERING LOCUS C GN=T31P16.130 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","K","Transcription","--"]
["EVM0024636","lncRNA_target",485,392,534,319,2.479424,1.699519,2.282671,1.678132,0.991928610936116,-0.0673258000167319,"down","--","--","--","K08592|4.93e-40|fve:101303909|sentrin-specific protease 1-like (A)","--","--","--","--","S","Function unknown","--"]
["EVM0017243","lncRNA_target",1969,1514,1909,1698,11.875445,9.690926,11.56924,11.418465,0.993230998100268,0.0377413390752204,"up","--","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0007077","lncRNA_target",231,180,43,84,0.695275,0.557257,0.12237,0.282841,0.0149939459541215,-1.68109217284038,"down","[RTKL]","General function prediction only;; Signal transduction mechanisms;; Transcription;; Replication, recombination and repair","Molecular Function: kinase activity (GO:0016301);; Biological Process: phosphorylation (GO:0016310);; ","--","--","--","--","G-type lectin S-receptor-like serine/threonine-protein kinase At1g11300 (Precursor) GN=At1g11300 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","T","Signal transduction mechanisms","--"]
["EVM0013106","lncRNA_target",6310,6320,6287,6043,19.523573,20.761484,19.547644,20.849728,0.968012433351262,-0.0504276739381613,"down","--","--","Biological Process: oligopeptide transport (GO:0006857);; Molecular Function: oligopeptide transporter activity (GO:0015198);; Cellular Component: membrane (GO:0016020);; Biological Process: transmembrane transport (GO:0055085);; Biological Process: response to karrikin (GO:0080167);; ","--","--","[T]","Signal transduction mechanisms","Oligopeptide transporter 4 GN=OPT4 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","P","Inorganic ion transport and metabolism","--"]
["EVM0026899","lncRNA_target",4294,3945,4302,4226,10.174416,9.778454,10.508673,10.991497,0.988262897917884,0.0366156620654754,"up","--","--","--","K12607|0|vvi:100252496|CCR4-NOT transcription complex subunit 10; K12607 CCR4-NOT transcription complex subunit 10 (A)","RNA degradation (ko03018)","[R]","General function prediction only","--","R","General function prediction only","--"]
["EVM0005159","lncRNA_target",1199,1053,1651,1639,3.613297,3.351503,5.001035,5.407712,0.23995130041164,0.535097453761066,"up","[H]","Coenzyme transport and metabolism","Molecular Function: NAD+ synthase (glutamine-hydrolyzing) activity (GO:0003952);; Molecular Function: ATP binding (GO:0005524);; Biological Process: NAD biosynthetic process (GO:0009435);; Molecular Function: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds (GO:0016810);; ","K01950|0|sot:102598127|glutamine-dependent NAD(+) synthetase-like; K01950 NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1] (A)","Nicotinate and nicotinamide metabolism (ko00760)","[HR]","Coenzyme transport and metabolism;; General function prediction only","Glutamine-dependent NAD(+) synthetase GN=At1g55090 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","H","Coenzyme transport and metabolism","--"]
["EVM0012687","lncRNA_target",9032,7945,9098,8628,11.560425,10.367156,11.089059,12.422258,0.971636887112385,0.0488833044929899,"up","--","--","--","K11789|0|sot:102588054|DDB1- and CUL4-associated factor homolog 1-like; K11789 HIV-1 Vpr-binding protein (A)","--","[D]","Cell cycle control, cell division, chromosome partitioning","DDB1- and CUL4-associated factor homolog 1 GN=DCAF1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","D","Cell cycle control, cell division, chromosome partitioning","--"]
["EVM0009544","lncRNA_target",35780,36974,36478,40477,166.39748,208.461265,170.01916,220.248175,0.959125752822993,0.0695293921876509,"up","[J]","Translation, ribosomal structure and biogenesis","Molecular Function: structural constituent of ribosome (GO:0003735);; Cellular Component: ribosome (GO:0005840);; Biological Process: translation (GO:0006412);; Molecular Function: 5S rRNA binding (GO:0008097);; ","K02932|0|fve:101296507|60S ribosomal protein L5-like; K02932 large subunit ribosomal protein L5e (A)","Ribosome (ko03010)","[J]","Translation, ribosomal structure and biogenesis","60S ribosomal protein L5 GN=RPL5 OS=Cucumis sativus (Cucumber) PE=2 SV=1","J","Translation, ribosomal structure and biogenesis","--"]
["EVM0002925","lncRNA_target",122,138,116,164,1.021129,0.967634,0.880035,1.291243,0.990419278447297,0.101729229852343,"up","--","--","Cellular Component: mitochondrion (GO:0005739);; ","--","--","--","--","--","T","Signal transduction mechanisms","--"]
["EVM0020868","lncRNA_target",5478,5489,5509,4441,37.527103,39.923267,37.922741,33.922115,0.828754989789046,-0.162234014906746,"down","[R]","General function prediction only","Molecular Function: GTP binding (GO:0005525);; Biological Process: small GTPase mediated signal transduction (GO:0007264);; Biological Process: protein transport (GO:0015031);; ","--","--","[U]","Intracellular trafficking, secretion, and vesicular transport","Ras-related protein RABA1f GN=RABA1F OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","--"]
["EVM0027655","lncRNA_target",12174,11117,8309,12043,36.395196,35.280206,25.014992,40.042709,0.904518945839873,-0.194332296843839,"down","--","--","Molecular Function: inositol hexakisphosphate binding (GO:0000822);; Biological Process: auxin-activated signaling pathway (GO:0009734);; ","K14485|0|vvi:100263734|protein TRANSPORT INHIBITOR RESPONSE 1; K14485 transport inhibitor response 1 (A)","Plant hormone signal transduction (ko04075)","[R]","General function prediction only","Protein TRANSPORT INHIBITOR RESPONSE 1 GN=T20O10.80 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","T","Signal transduction mechanisms","--"]
["EVM0009863","lncRNA_target",5003,4694,5342,4964,16.608696,16.546295,17.823282,18.377409,0.956390939278854,0.0723725813005765,"up","[O]","Posttranslational modification, protein turnover, chaperones","Molecular Function: ATP binding (GO:0005524);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: protein folding (GO:0006457);; Molecular Function: unfolded protein binding (GO:0051082);; ","K09497|0|sly:101251777|T-complex protein 1 subunit epsilon; K09497 T-complex protein 1 subunit epsilon (A)","--","[O]","Posttranslational modification, protein turnover, chaperones","T-complex protein 1 subunit epsilon {ECO:0000303|PubMed:11599560} GN=F21J9.12 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0027433","lncRNA_target",5225,4810,4485,4371,10.989591,13.70259,13.023853,13.724985,0.747123881132362,-0.193753875536934,"down","--","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0001768","lncRNA_target",506,583,884,713,2.144312,2.636894,3.783326,3.367863,0.43170753145999,0.527529663208486,"up","--","--","Molecular Function: GTPase activity (GO:0003924);; Molecular Function: calcium ion binding (GO:0005509);; Molecular Function: GTP binding (GO:0005525);; Cellular Component: endosome (GO:0005768);; Biological Process: GTP catabolic process (GO:0006184);; Biological Process: protein targeting to vacuole (GO:0006623);; Biological Process: endocytosis (GO:0006897);; Biological Process: membrane fusion (GO:0006944);; Cellular Component: plasmodesma (GO:0009506);; Cellular Component: membrane (GO:0016020);; Biological Process: endocytic recycling (GO:0032456);; Biological Process: hyperosmotic salinity response (GO:0042538);; Biological Process: Golgi vesicle transport (GO:0048193);; ","K12483|0|vvi:100262940|EH domain-containing protein 3-like; K12483 EH domain-containing protein 1 (A)","Endocytosis (ko04144)","[TU]","Signal transduction mechanisms;; Intracellular trafficking, secretion, and vesicular transport","--","U","Intracellular trafficking, secretion, and vesicular transport","--"]
["EVM0012749","lncRNA_target",2718,2542,2584,2383,22.445683,22.290422,21.449738,21.952522,0.941751940677739,-0.0983832465420838,"down","[S]","Function unknown","--","K17550|9.84053e-157|sly:101265025|protein phosphatase 1 regulatory subunit pprA; K17550 protein phosphatase 1 regulatory subunit 7 (A)","--","[T]","Signal transduction mechanisms","187-kDa microtubule-associated protein AIR9 GN=AIR9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","T","Signal transduction mechanisms","--"]
["EVM0019040","lncRNA_target",2283,2227,2411,1950,4.280438,4.437671,4.765427,4.176132,0.971636887112385,-0.0696075022980473,"down","--","--","--","--","--","--","--","--","R","General function prediction only","--"]
["EVM0004571","lncRNA_target",4849,8238,4367,4364,46.808218,87.72512,42.764057,46.794462,0.727496764829418,-0.609451546285643,"down","--","--","Cellular Component: vacuolar membrane (GO:0005774);; Cellular Component: endoplasmic reticulum membrane (GO:0005789);; Cellular Component: plasma membrane (GO:0005886);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Molecular Function: nitrate reductase (NADH) activity (GO:0009703);; Biological Process: sterol biosynthetic process (GO:0016126);; Biological Process: pentacyclic triterpenoid biosynthetic process (GO:0019745);; Molecular Function: heme binding (GO:0020037);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","--","[C]","Energy production and conversion","Cytochrome b5 GN=CYB5 OS=Brassica oleracea var. botrytis (Cauliflower) PE=1 SV=1","C","Energy production and conversion","--"]
["EVM0026812","lncRNA_target",244,243,176,160,1.511874,1.597584,1.431826,1.13156,0.676554318246931,-0.553012648895629,"down","[P]","Inorganic ion transport and metabolism","Biological Process: maltose metabolic process (GO:0000023);; Biological Process: pentose-phosphate shunt (GO:0006098);; Biological Process: aging (GO:0007568);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: starch biosynthetic process (GO:0019252);; Biological Process: positive regulation of catalytic activity (GO:0043085);; ","--","--","--","--","Rhodanese-like domain-containing protein 14, chloroplastic (Precursor) GN=At4g27700 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","--"]
["EVM0017092","lncRNA_target",6339,5710,5893,5410,38.923373,37.069193,36.16526,36.848915,0.909031725349887,-0.107247220563845,"down","--","--","--","K14012|2.52092e-168|pop:POPTR_0011s01620g|POPTRDRAFT_568093; phosphatase-like protein Psc923; K14012 UBX domain-containing protein 1 (A)","Protein processing in endoplasmic reticulum (ko04141)","[Y]","Nuclear structure","UBA and UBX domain-containing protein At4g15410 GN=At4g15410 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","Y","Nuclear structure","--"]
["EVM0011924","lncRNA_target",164,140,235,231,0.86526,0.794189,1.25871,1.369207,0.637488564868956,0.604746172049903,"up","--","--","--","K18812|2.54124e-93|sot:102583955|putative cyclin-D6-1-like; K18812 cyclin D6, plant (A)","--","[D]","Cell cycle control, cell division, chromosome partitioning","Putative cyclin-D6-1 GN=CYCD6-1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1","D","Cell cycle control, cell division, chromosome partitioning","--"]
["EVM0005357","lncRNA_target",5961,5467,5079,5641,43.747486,42.599525,37.454056,46.169319,0.910544307600609,-0.101111651268675,"down","--","--","--","--","--","--","--","Uncharacterized protein At5g48480 GN=At5g48480 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","S","Function unknown","--"]
["EVM0006911","lncRNA_target",3298,3429,4728,4201,16.665289,18.396868,24.010723,23.674873,0.242715605936378,0.389259967028681,"up","--","--","Biological Process: transport (GO:0006810);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","[I]","Lipid transport and metabolism","Patellin-6 GN=PATL6 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","I","Lipid transport and metabolism","--"]
["EVM0016300","lncRNA_target",627,656,685,767,1.912291,1.759698,2.057574,2.660801,0.932726635740227,0.167104453518065,"up","--","--","Molecular Function: nucleotide binding (GO:0000166);; Cellular Component: anaphase-promoting complex (GO:0005680);; Biological Process: embryo development (GO:0009790);; Biological Process: regulation of mitotic metaphase/anaphase transition (GO:0030071);; Biological Process: anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process (GO:0031145);; Biological Process: ovule development (GO:0048481);; ","K03351|0|tcc:TCM_029983|Transducin/WD40 repeat-like superfamily protein isoform 1; K03351 anaphase-promoting complex subunit 4 (A)","Ubiquitin mediated proteolysis (ko04120)","[DO]","Cell cycle control, cell division, chromosome partitioning;; Posttranslational modification, protein turnover, chaperones","Anaphase-promoting complex subunit 4 GN=APC4 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","D","Cell cycle control, cell division, chromosome partitioning","--"]
["EVM0019443","lncRNA_target",311,302,291,271,0.476978,0.490646,0.590023,0.625706,0.96293641296617,-0.141487526744122,"down","--","--","--","--","--","--","--","LRR receptor-like serine/threonine-protein kinase EFR (Precursor) GN=EFR OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","R","General function prediction only","--"]
["EVM0021401","lncRNA_target",699,3443,728,604,1.463478,15.861384,1.540715,1.405062,0.79930752049417,-1.68594054853392,"down","--","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0020200","lncRNA_target",128,165,146,107,0.732619,1.011452,0.846855,0.709018,0.948554339754188,-0.242272509541337,"down","--","--","--","--","--","--","--","--","R","General function prediction only","--"]
["EVM0025467","lncRNA_target",775,684,911,884,3.847733,3.71796,4.931811,5.263333,0.810808441420546,0.286324867852423,"up","[M]","Cell wall/membrane/envelope biogenesis","Molecular Function: transferase activity (GO:0016740);; ","--","--","[R]","General function prediction only","--","R","General function prediction only","--"]
["EVM0001975","lncRNA_target",9064,8502,9381,8296,50.148853,49.942856,52.157951,51.184692,0.998007575480397,-0.00812208585762633,"down","[A]","RNA processing and modification","Molecular Function: nucleic acid binding (GO:0003676);; Molecular Function: poly(A)-specific ribonuclease activity (GO:0004535);; Cellular Component: nucleus (GO:0005634);; ","K12581|5.58522e-168|gmx:100798365|probable CCR4-associated factor 1 homolog 7-like; K12581 CCR4-NOT transcription complex subunit 7/8 (A)","RNA degradation (ko03018)","[A]","RNA processing and modification","Probable CCR4-associated factor 1 homolog 7 GN=CAF1-7 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","K","Transcription","--"]
["EVM0017119","lncRNA_target",4855,6486,5765,4328,21.885099,31.054092,26.320446,21.325343,0.914919917301105,-0.198637462241025,"down","--","--","--","--","--","--","--","Transcription factor PCL1 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","K","Transcription","--"]
["EVM0021891","lncRNA_target",324,303,339,303,1.409859,1.39766,1.484118,1.470579,0.998007575480397,0.0173312186488268,"up","[Q]","Secondary metabolites biosynthesis, transport and catabolism","Molecular Function: monooxygenase activity (GO:0004497);; Molecular Function: iron ion binding (GO:0005506);; Molecular Function: electron carrier activity (GO:0009055);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705);; Molecular Function: heme binding (GO:0020037);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","--","[Q]","Secondary metabolites biosynthesis, transport and catabolism","Cytochrome P450 78A5 GN=F21F23.15 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","--"]
["EVM0005073","lncRNA_target",7620,4990,4795,4144,39.849902,19.859574,17.994986,17.280058,0.473819328885591,-0.506713466050778,"down","--","--","Biological Process: formation of translation preinitiation complex (GO:0001731);; Molecular Function: translation initiation factor activity (GO:0003743);; Cellular Component: eukaryotic translation initiation factor 3 complex (GO:0005852);; Biological Process: regulation of translational initiation (GO:0006446);; Cellular Component: eukaryotic 43S preinitiation complex (GO:0016282);; Cellular Component: eukaryotic 48S preinitiation complex (GO:0033290);; ","K03245|1.85101e-51|pmum:103336828|eukaryotic translation initiation factor 3 subunit J-like; K03245 translation initiation factor 3 subunit J (A)","RNA transport (ko03013)","[J]","Translation, ribosomal structure and biogenesis","--","J","Translation, ribosomal structure and biogenesis","--"]
["EVM0025221","lncRNA_target",152,265,335,261,0.365746,0.937284,1.231823,0.986649,0.700066608147697,0.480616153164113,"up","--","--","--","--","--","[G]","Carbohydrate transport and metabolism","--","G","Carbohydrate transport and metabolism","--"]
["EVM0004495","lncRNA_target",1547,1220,1669,1464,10.727257,9.376433,11.615933,11.457546,0.905482810812956,0.165471601924554,"up","[J]","Translation, ribosomal structure and biogenesis","Molecular Function: structural constituent of ribosome (GO:0003735);; Biological Process: DNA-templated transcription, elongation (GO:0006354);; Biological Process: translation (GO:0006412);; Biological Process: pyrimidine ribonucleotide biosynthetic process (GO:0009220);; Cellular Component: large ribosomal subunit (GO:0015934);; Biological Process: ribosome biogenesis (GO:0042254);; ","K02876|3.70277e-109|vvi:100251266|54S ribosomal protein L10, mitochondrial; K02876 large subunit ribosomal protein L15 (A)","Ribosome (ko03010)","[J]","Translation, ribosomal structure and biogenesis","--","J","Translation, ribosomal structure and biogenesis","--"]
["EVM0015650","lncRNA_target",573,586,425,408,3.804688,4.129282,2.833332,3.022886,0.580277683732639,-0.492732262128122,"down","--","--","Molecular Function: peroxidase activity (GO:0004601);; Biological Process: response to oxidative stress (GO:0006979);; Molecular Function: heme binding (GO:0020037);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00430|1.57281e-156|pxb:103944516|peroxidase 27-like; K00430 peroxidase [EC:1.11.1.7] (A)","Phenylalanine metabolism (ko00360);; Phenylpropanoid biosynthesis (ko00940)","--","--","Peroxidase 27 (Precursor) GN=T4P13.12 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","G","Carbohydrate transport and metabolism","--"]
["EVM0004315","lncRNA_target",137,209,315,296,0.645053,1.044825,1.49021,1.557332,0.325116773988438,0.794921588562882,"up","--","--","Molecular Function: peroxidase activity (GO:0004601);; Biological Process: response to oxidative stress (GO:0006979);; Molecular Function: heme binding (GO:0020037);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00430|1.67274e-150|sot:102589695|peroxidase 3-like; K00430 peroxidase [EC:1.11.1.7] (A)","Phenylalanine metabolism (ko00360);; Phenylpropanoid biosynthesis (ko00940)","--","--","Peroxidase 3 (Precursor) GN=YUP8H12.13 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","--","--","--"]
["EVM0020283","lncRNA_target",2596,2351,2882,2761,10.405698,9.84399,11.726839,12.684807,0.854524567411238,0.17622865277426,"up","--","--","--","K13206|1.50617e-84|vvi:100241506|nuclear speckle splicing regulatory protein 1-like; K13206 coiled-coil domain-containing protein 55 (A)","--","[S]","Function unknown","--","S","Function unknown","--"]
["EVM0010490","lncRNA_target",1409,1368,1426,1168,20.262053,20.889883,20.607565,18.720179,0.946399600500741,-0.118951345234134,"down","--","--","Cellular Component: extracellular region (GO:0005576);; Molecular Function: growth factor activity (GO:0008083);; Biological Process: cell proliferation (GO:0008283);; ","--","--","--","--","Phytosulfokine-beta (Precursor) GN=T32N15.2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","R","General function prediction only","--"]
["EVM0026074","lncRNA_target",1537,1413,2315,2145,7.277022,7.194635,11.114219,11.306098,0.113327313890616,0.581168284906506,"up","[RTKL]","General function prediction only;; Signal transduction mechanisms;; Transcription;; Replication, recombination and repair","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; ","--","--","[T]","Signal transduction mechanisms","Receptor-like serine/threonine-protein kinase At3g01300 GN=At3g01300 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","T","Signal transduction mechanisms","--"]
["EVM0022942","lncRNA_target",14481,13229,13177,11463,29.537859,53.979547,27.543746,27.104372,0.687019932579442,-0.186610651725423,"down","--","--","Molecular Function: serine-type endopeptidase activity (GO:0004252);; Cellular Component: Golgi apparatus (GO:0005794);; Biological Process: proteolysis (GO:0006508);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","[T]","Signal transduction mechanisms","--","T","Signal transduction mechanisms","--"]
["EVM0000003","lncRNA_target",278,235,271,232,1.029264,0.925533,1.010683,0.958664,0.995860169506378,-0.0444839611443135,"down","--","--","--","K14786|5.951e-121|sot:102582288|protein KRI1 homolog; K14786 protein KRI1 (A)","--","[J]","Translation, ribosomal structure and biogenesis","--","J","Translation, ribosomal structure and biogenesis","--"]
["EVM0027580","lncRNA_target",3247,3074,3761,3495,26.869917,27.009136,31.277838,32.259254,0.81506622988653,0.183326491399411,"up","--","--","--","--","--","--","--","--","R","General function prediction only","--"]
["EVM0012361","lncRNA_target",1770,1783,2564,2228,21.591139,22.086731,19.662146,19.535352,0.361467680361023,0.412229047462201,"up","--","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0015480","lncRNA_target",616,1195,759,806,1.097685,2.049276,1.452831,1.692419,0.958317147506024,-0.236667066370542,"down","[RTKL]","General function prediction only;; Signal transduction mechanisms;; Transcription;; Replication, recombination and repair","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Biological Process: protein phosphorylation (GO:0006468);; ","--","--","[T]","Signal transduction mechanisms","Serine/threonine-protein kinase CTR1 GN=CTR1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","T","Signal transduction mechanisms","--"]
["EVM0014822","lncRNA_target",4203,4193,4904,4273,15.674707,16.604525,18.376204,17.772024,0.912701252773871,0.109263605013455,"up","[O]","Posttranslational modification, protein turnover, chaperones","--","--","--","[O]","Posttranslational modification, protein turnover, chaperones","Uncharacterized protein At4g38065 GN=At4g38065 OS=Arabidopsis thaliana (Mouse-ear cress) PE=4 SV=1","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0020381","lncRNA_target",7080,6777,8449,7443,35.281628,35.857403,42.308144,41.360222,0.742438034870914,0.179903472380426,"up","[I]","Lipid transport and metabolism","Molecular Function: copper ion binding (GO:0005507);; Biological Process: fatty acid biosynthetic process (GO:0006633);; Cellular Component: chloroplast stroma (GO:0009570);; Cellular Component: thylakoid (GO:0009579);; Cellular Component: chloroplast envelope (GO:0009941);; Molecular Function: enoyl-[acyl-carrier-protein] reductase activity (GO:0016631);; ","K00208|0|vvi:100250344|enoyl-[acyl-carrier-protein] reductase [NADH] 1, chloroplastic-like; K00208 enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] (A)","Fatty acid biosynthesis (ko00061);; Biotin metabolism (ko00780);; Fatty acid metabolism (ko01212)","[R]","General function prediction only","Enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic (Precursor) GN=T6P5.19 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","R","General function prediction only","--"]
["EVM0010382","lncRNA_target",4899,4569,4715,4718,13.083533,13.25229,12.545928,14.258297,0.994939991835646,-0.0181519535848121,"down","[O]","Posttranslational modification, protein turnover, chaperones","--","--","--","[O]","Posttranslational modification, protein turnover, chaperones","Ubiquitin domain-containing protein DSK2b GN=DSK2B OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0027781","lncRNA_target",1284,1121,1244,1252,7.997415,7.418847,7.786583,8.697646,0.993230998100268,0.042399826153727,"up","[H]","Coenzyme transport and metabolism","Molecular Function: hydroxyethylthiazole kinase activity (GO:0004417);; Biological Process: thiamine biosynthetic process (GO:0009228);; Biological Process: phosphorylation (GO:0016310);; ","K00878|1.57424e-103|tcc:TCM_020431|Hydroxyethylthiazole kinase family protein; K00878 hydroxyethylthiazole kinase [EC:2.7.1.50] (A)","Thiamine metabolism (ko00730)","--","--","Hydroxyethylthiazole kinase GN=THIM OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","H","Coenzyme transport and metabolism","--"]
["EVM0008457","lncRNA_target",289,208,289,299,2.638625,2.090917,2.75946,3.150592,0.923133779073767,0.2364811039174,"up","--","--","--","--","--","--","--","--","R","General function prediction only","--"]
["EVM0025188","lncRNA_target",20299,20108,19895,17228,61.869237,100.498281,89.720715,87.945506,0.81506622988653,-0.141409793176789,"down","[RTKL]","General function prediction only;; Signal transduction mechanisms;; Transcription;; Replication, recombination and repair","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; ","--","--","[T]","Signal transduction mechanisms","Serine/threonine-protein kinase HT1 GN=HT1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","T","Signal transduction mechanisms","--"]
["EVM0024225","lncRNA_target",1293,2041,1303,959,4.635223,7.516072,4.765498,3.899702,0.693955155116725,-0.594244878022192,"down","--","--","Biological Process: mitotic G2 phase (GO:0000085);; Cellular Component: nuclear envelope (GO:0005635);; Biological Process: mRNA export from nucleus (GO:0006406);; Biological Process: photomorphogenesis (GO:0009640);; Biological Process: embryo development ending in seed dormancy (GO:0009793);; Biological Process: seed germination (GO:0009845);; Biological Process: regulation of flower development (GO:0009909);; Biological Process: meristem structural organization (GO:0009933);; Biological Process: vernalization response (GO:0010048);; Biological Process: maintenance of meristem identity (GO:0010074);; Biological Process: seed dormancy process (GO:0010162);; Biological Process: sugar mediated signaling pathway (GO:0010182);; Biological Process: vegetative to reproductive phase transition of meristem (GO:0010228);; Biological Process: cullin deneddylation (GO:0010388);; Biological Process: protein ubiquitination (GO:0016567);; Biological Process: histone methylation (GO:0016571);; Biological Process: protein deubiquitination (GO:0016579);; Biological Process: lipid storage (GO:0019915);; Biological Process: positive regulation of transcription, DNA-templated (GO:0045893);; Biological Process: response to freezing (GO:0050826);; ","K14304|0|vvi:100256006|nuclear pore complex protein NUP85; K14304 nuclear pore complex protein Nup85 (A)","RNA transport (ko03013)","[YU]","Nuclear structure;; Intracellular trafficking, secretion, and vesicular transport","Nuclear pore complex protein NUP85 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","Y","Nuclear structure","--"]
["EVM0016904","lncRNA_target",4807,4433,4496,4248,8.510376,8.420248,8.075345,8.462029,0.929870522289922,-0.0941511988975764,"down","--","--","--","--","--","[U]","Intracellular trafficking, secretion, and vesicular transport","Trafficking protein particle complex II-specific subunit 120 homolog {ECO:0000305} OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","--"]
["EVM0025884","lncRNA_target",612,632,721,763,4.328723,4.363426,3.951829,4.637921,0.877740683111693,0.241425144850036,"up","--","--","--","--","--","--","--","Protein WVD2-like 1 GN=WDL1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","S","Function unknown","--"]
["EVM0024694","lncRNA_target",295,284,397,483,0.994404,1.024144,1.346785,1.81885,0.502505491498827,0.597170844390633,"up","--","--","--","--","--","[T]","Signal transduction mechanisms","Probable disease resistance protein At1g58390 GN=At1g58390 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=4","T","Signal transduction mechanisms","--"]
["EVM0027028","lncRNA_target",5735,5043,5710,4980,19.434015,17.856926,19.455396,17.82695,0.991674540858366,-0.0281202457146723,"down","[K]","Transcription","--","K12605|7.18195e-171|vvi:100263354|probable NOT transcription complex subunit VIP2; K12605 CCR4-NOT transcription complex subunit 2 (A)","RNA degradation (ko03018)","[KDR]","Transcription;; Cell cycle control, cell division, chromosome partitioning;; General function prediction only","Probable NOT transcription complex subunit VIP2 GN=VIP2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","K","Transcription","--"]
["EVM0011693","lncRNA_target",1016,924,1314,1118,6.700041,6.468598,8.712988,8.219881,0.730114675814845,0.308211259678059,"up","--","--","Molecular Function: serine-type endopeptidase activity (GO:0004252);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: proteolysis (GO:0006508);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","[T]","Signal transduction mechanisms","--","T","Signal transduction mechanisms","--"]
["EVM0013191","lncRNA_target",12737,12256,4950,4609,54.379253,55.559563,21.237385,21.94475,{"v":1.05947564421826e-16,"d":"1.06E-16"},-1.40257129810122,"down","--","--","Molecular Function: transporter activity (GO:0005215);; Biological Process: transport (GO:0006810);; Cellular Component: integral component of membrane (GO:0016021);; ","K15283|0|gmx:100804205|glucose-6-phosphate/phosphate translocator 2, chloroplastic-like; K15283 solute carrier family 35, member E1 (A)","--","[GE]","Carbohydrate transport and metabolism;; Amino acid transport and metabolism","Glucose-6-phosphate/phosphate translocator 2, chloroplastic (Precursor) GN=GPT2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","G","Carbohydrate transport and metabolism","--"]
["EVM0025398","lncRNA_target",1191,1017,1481,1538,5.821229,5.56967,7.162489,8.059899,0.436628408033131,0.441712495830394,"up","--","--","--","--","--","--","--","Squamosa promoter-binding-like protein 13B GN=MFB16.6 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1","K","Transcription","--"]
["EVM0013229","lncRNA_target",967,875,1008,1051,2.72676,3.029506,3.410121,3.600477,0.934226743066694,0.149939066020299,"up","[O]","Posttranslational modification, protein turnover, chaperones","--","--","--","[O]","Posttranslational modification, protein turnover, chaperones","Cell division cycle protein 48 homolog GN=CDC48 OS=Glycine max (Soybean) PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0018180","lncRNA_target",34982,32415,32871,28332,104.4037,102.472623,96.927781,93.677319,0.774629167273533,-0.156915420706048,"down","--","--","Cellular Component: endosome (GO:0005768);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: trans-Golgi network (GO:0005802);; Cellular Component: plasma membrane (GO:0005886);; ","--","--","[G]","Carbohydrate transport and metabolism","--","G","Carbohydrate transport and metabolism","--"]
["EVM0010703","lncRNA_target",2602,2206,2862,2245,5.823693,5.238406,6.443582,5.536005,0.966481173381655,0.0678822114185471,"up","--","--","--","K14398|0|sot:102599228|cleavage and polyadenylation specificity factor subunit CG7185-like; K14398 cleavage and polyadenylation specificity factor subunit 6/7 (A)","mRNA surveillance pathway (ko03015)","[R]","General function prediction only","Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba (White mustard) PE=2 SV=1","A","RNA processing and modification","--"]
["EVM0024221","lncRNA_target",90,121,147,153,0.198375,0.282226,0.325319,0.374312,0.814951744711144,0.488413662414878,"up","[RTKL]","General function prediction only;; Signal transduction mechanisms;; Transcription;; Replication, recombination and repair","--","--","--","[T]","Signal transduction mechanisms","Putative receptor-like protein kinase At5g39000 (Precursor) GN=At5g39000 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1","T","Signal transduction mechanisms","--"]
["EVM0024886","lncRNA_target",2231,1854,978,1070,12.699413,11.569001,5.408771,6.762181,0.00086429534675876,-1.00335317523984,"down","--","--","Molecular Function: protein tyrosine phosphatase activity (GO:0004725);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: peptidyl-tyrosine dephosphorylation (GO:0035335);; Biological Process: negative regulation of MAP kinase activity (GO:0043407);; Biological Process: regulation of defense response to bacterium (GO:1900424);; ","K18045|8.71493e-89|vvi:100256357|probable tyrosine-protein phosphatase At1g05000; K18045 tyrosine-protein phosphatase SIW14 [EC:3.1.3.48] (A)","--","[V]","Defense mechanisms","Probable tyrosine-protein phosphatase At1g05000 GN=At1g05000 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","V","Defense mechanisms","--"]
["EVM0000687","lncRNA_target",6208,5779,6455,6445,20.608442,20.390749,21.55385,23.836867,0.929607241204198,0.0930563514031946,"up","[R]","General function prediction only","--","--","--","[R]","General function prediction only","Ankyrin repeat-containing protein At5g02620 GN=At5g02620 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","R","General function prediction only","--"]
["EVM0019913","lncRNA_target",4100,3835,3117,2618,15.494584,15.400749,11.728955,10.899865,0.112141271613133,-0.487366218393113,"down","--","--","Molecular Function: acetylglucosaminyltransferase activity (GO:0008375);; Cellular Component: membrane (GO:0016020);; ","--","--","--","--","--","S","Function unknown","--"]
["EVM0013481","lncRNA_target",5282,4941,4782,4966,44.7537,44.445297,40.713871,46.925117,0.938658266405842,-0.0802303710826025,"down","--","--","--","--","--","--","--","Uncharacterized protein At5g48480 GN=At5g48480 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","S","Function unknown","--"]
["EVM0003788","lncRNA_target",587,775,580,543,3.980681,6.042022,4.061515,4.341602,0.82292173284717,-0.300957519724045,"down","--","--","--","--","--","--","--","Molybdenum cofactor sulfurase {ECO:0000255|HAMAP-Rule:MF_03050} GN=FLACCA OS=Solanum lycopersicum (Tomato) PE=2 SV=1","--","--","--"]
["EVM0002014","lncRNA_target",3100,3144,3359,2920,45.705978,49.209953,49.764156,48.005993,0.998007575480397,-0.0114296093525788,"down","--","--","Cellular Component: nucleus (GO:0005634);; Biological Process: photorespiration (GO:0009853);; ","--","--","--","--","--","S","Function unknown","--"]
["EVM0003666","lncRNA_target",420,4708,110,36,3.115625,37.149761,0.818169,0.296969,0.514639835114544,-5.21997941942646,"down","--","--","Molecular Function: nucleic acid binding (GO:0003676);; ","--","--","[A]","RNA processing and modification","--","A","RNA processing and modification","--"]
["EVM0014848","lncRNA_target",1315,1306,1195,885,12.645291,13.339341,11.546254,9.491233,0.642829924094005,-0.358079624840406,"down","[J]","Translation, ribosomal structure and biogenesis","Molecular Function: structural constituent of ribosome (GO:0003735);; Cellular Component: ribosome (GO:0005840);; Biological Process: translation (GO:0006412);; ","K02889|8.25392e-101|tcc:TCM_021775|60S ribosomal protein L21; K02889 large subunit ribosomal protein L21e (A)","Ribosome (ko03010)","[J]","Translation, ribosomal structure and biogenesis","60S ribosomal protein L21-1 GN=RPL21C OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","J","Translation, ribosomal structure and biogenesis","--"]
["EVM0005245","lncRNA_target",9287,9298,8522,8207,35.920116,38.185741,33.123047,35.401634,0.766277270878294,-0.167458176418669,"down","[EH]","Amino acid transport and metabolism;; Coenzyme transport and metabolism","Molecular Function: magnesium ion binding (GO:0000287);; Molecular Function: catalytic activity (GO:0003824);; Biological Process: metabolic process (GO:0008152);; Molecular Function: thiamine pyrophosphate binding (GO:0030976);; ","K12261|0|sly:101264774|2-hydroxyacyl-CoA lyase; K12261 2-hydroxyacyl-CoA lyase 1 [EC:4.1.-.-] (A)","Peroxisome (ko04146)","[EH]","Amino acid transport and metabolism;; Coenzyme transport and metabolism","2-hydroxyacyl-CoA lyase GN=T10B6.40 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","H","Coenzyme transport and metabolism","--"]
["EVM0015110","lncRNA_target",6291,5702,5876,4775,31.934705,30.742863,29.911536,27.027468,0.7493182848508,-0.190589453833163,"down","--","--","Cellular Component: endoplasmic reticulum (GO:0005783);; ","--","--","[U]","Intracellular trafficking, secretion, and vesicular transport","Protein disulfide-isomerase 5-3 (Precursor) GN=K10D20.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","--"]
["EVM0004076","lncRNA_target",467,323,445,380,2.181528,1.709422,2.305344,2.122663,0.994551809896852,0.0506517484916578,"up","--","--","Molecular Function: structural molecule activity (GO:0005198);; Cellular Component: chloroplast stroma (GO:0009570);; Cellular Component: thylakoid part (GO:0044436);; ","--","--","--","--","Probable plastid-lipid-associated protein 13, chloroplastic (Precursor) GN=T24P15.4 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","S","Function unknown","--"]
["EVM0015920","lncRNA_target",7439,6564,6531,5479,8.069078,7.21575,7.188268,6.334873,0.583642484793555,-0.239208284223048,"down","[RTKL]","General function prediction only;; Signal transduction mechanisms;; Transcription;; Replication, recombination and repair","Molecular Function: kinase activity (GO:0016301);; Biological Process: phosphorylation (GO:0016310);; ","--","--","--","--","G-type lectin S-receptor-like serine/threonine-protein kinase At1g11330 (Precursor) GN=At1g11330 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=3","T","Signal transduction mechanisms","--"]
["EVM0000116","lncRNA_target",1361,1331,1467,1319,18.21752,19.097992,19.48341,18.964283000000002,0.994165978854972,0.0319766111288068,"up","--","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0007296","lncRNA_target",1149,763,1127,1044,5.68113,3.932583,5.621514,5.919494,0.914919917301105,0.175056596746911,"up","--","--","--","K15208|1.33123e-93|sly:101266838|uncharacterized LOC101266838; K15208 snRNA-activating protein complex subunit 1 (A)","--","--","--","--","S","Function unknown","--"]
["EVM0004255","lncRNA_target",644,567,813,723,4.530882,4.236079,5.752276,5.676501,0.774629167273533,0.327332884167812,"up","--","--","--","K14834|2.35625e-59|sot:102606180|nucleolar complex protein 3 homolog; K14834 nucleolar complex protein 3 (A)","--","[JU]","Translation, ribosomal structure and biogenesis;; Intracellular trafficking, secretion, and vesicular transport","--","U","Intracellular trafficking, secretion, and vesicular transport","--"]
["EVM0021345","lncRNA_target",4559,4639,4255,3726,16.94737,18.121683,15.598966,15.377117,0.698055918806634,-0.224063719209641,"down","[R]","General function prediction only","--","--","--","[S]","Function unknown","Uncharacterized protein At2g24330 GN=At2g24330 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","--"]
["EVM0020369","lncRNA_target",304,327,617,456,1.271667,1.451991,2.595919,2.130693,0.243051900761341,0.739595736195008,"up","--","--","--","--","--","[R]","General function prediction only","Pentatricopeptide repeat-containing protein At4g16835, mitochondrial (Precursor) GN=FCAALL.441 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=3","R","General function prediction only","--"]
["EVM0003218","lncRNA_target",9260,8525,9004,8156,28.938631,29.366569,28.382164,29.579427,0.951118599886705,-0.0675864151337111,"down","[R]","General function prediction only","Molecular Function: Rab GTPase activator activity (GO:0005097);; Biological Process: positive regulation of Rab GTPase activity (GO:0032851);; ","--","--","[T]","Signal transduction mechanisms","--","T","Signal transduction mechanisms","--"]
["EVM0024390","lncRNA_target",34,35,692,625,0.153211,0.168642,3.195689,3.203601,{"v":3.78925506333555e-20,"d":"3.79E-20"},4.23602087230191,"up","--","--","Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; ","--","--","--","--","PAN domain-containing protein At5g03700 (Precursor) GN=At5g03700 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","R","General function prediction only","--"]
["EVM0015465","lncRNA_target",2069,2357,1997,1716,7.294312,13.6227,7.534059,6.817794,0.710608210396396,-0.275822451232049,"down","[R]","General function prediction only","Molecular Function: GTP binding (GO:0005525);; Cellular Component: chloroplast (GO:0009507);; ","--","--","[R]","General function prediction only","--","R","General function prediction only","--"]
["EVM0021960","lncRNA_target",57224,53218,33175,35162,116.843239,115.399971,68.099144,80.277866,{"v":9.07681660296056e-05,"d":"9.08E-05"},-0.703308294561413,"down","--","--","Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Biological Process: metabolic process (GO:0008152);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: response to sucrose (GO:0009744);; Biological Process: response to fructose (GO:0009750);; ","K06617|0|tcc:TCM_038146|Raffinose synthase family protein isoform 1; K06617 raffinose synthase [EC:2.4.1.82] (A)","Galactose metabolism (ko00052)","--","--","Probable galactinol--sucrose galactosyltransferase 6 GN=F5O24.140 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","R","General function prediction only","--"]
["EVM0022773","lncRNA_target",306,326,354,368,2.301555,2.718867,2.939171,3.24884,0.943414233151973,0.177704969909251,"up","[S]","Function unknown","Molecular Function: aminoacyl-tRNA hydrolase activity (GO:0004045);; ","K04794|1.99921e-79|vvi:100243888|peptidyl-tRNA hydrolase 2, mitochondrial; K04794 peptidyl-tRNA hydrolase, PTH2 family [EC:3.1.1.29] (A)","--","[S]","Function unknown","--","S","Function unknown","--"]
["EVM0007626","lncRNA_target",113,108,119,114,0.785229,0.991922,0.725188,0.941881,0.995874826054047,0.0614364200692789,"up","[S]","Function unknown","Cellular Component: membrane (GO:0016020);; ","--","--","[S]","Function unknown","GDT1-like protein 5 GN=At1g68650 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","S","Function unknown","--"]
["EVM0008689","lncRNA_target",2630,2719,2783,2643,8.320592,8.885021,9.080517,9.206206,0.999636585820994,0.00377128865709173,"up","--","--","--","--","--","--","--","Zinc finger CCCH domain-containing protein 13 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","R","General function prediction only","--"]
["EVM0015785","lncRNA_target",2318,2172,2282,1603,6.15104,5.852947,6.300625,4.705711,0.794321122389494,-0.233881908909065,"down","[RTKL]","General function prediction only;; Signal transduction mechanisms;; Transcription;; Replication, recombination and repair","Molecular Function: kinase activity (GO:0016301);; Biological Process: phosphorylation (GO:0016310);; ","--","--","--","--","G-type lectin S-receptor-like serine/threonine-protein kinase At1g11330 (Precursor) GN=At1g11330 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=3","T","Signal transduction mechanisms","--"]
["EVM0000037","lncRNA_target",3345,3364,3815,3536,19.229782,20.531246,22.041397,22.668974,0.916474088657976,0.114749488085364,"up","--","--","Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Cellular Component: vacuole (GO:0005773);; Biological Process: carbohydrate metabolic process (GO:0005975);; Cellular Component: plant-type cell wall (GO:0009505);; Cellular Component: plasmodesma (GO:0009506);; Molecular Function: cation binding (GO:0043169);; Cellular Component: anchored component of plasma membrane (GO:0046658);; ","--","--","--","--","Glucan endo-1,3-beta-glucosidase 5 (Precursor) GN=At4g31140 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","R","General function prediction only","--"]
["EVM0020592","lncRNA_target",191,158,101,91,2.306677,2.029219,1.220997,1.216203,0.424176977460025,-0.875970888961193,"down","--","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0021701","lncRNA_target",1259,1100,1544,1264,3.526036,3.271782,4.346979,3.950731,0.826281198649827,0.233029456213009,"up","--","--","--","--","--","[T]","Signal transduction mechanisms","Putative disease resistance protein At1g50180 GN=At1g50180 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=2","T","Signal transduction mechanisms","--"]
["EVM0026900","lncRNA_target",17729,16034,16457,16476,154.147205,148.033581,143.793879,159.750796,0.962954920083193,-0.048034623268093,"down","[O]","Posttranslational modification, protein turnover, chaperones","Biological Process: RNA splicing, via endonucleolytic cleavage and ligation (GO:0000394);; Biological Process: protein peptidyl-prolyl isomerization (GO:0000413);; Molecular Function: peptidyl-prolyl cis-trans isomerase activity (GO:0003755);; Molecular Function: protein binding (GO:0005515);; Molecular Function: FK506 binding (GO:0005528);; Cellular Component: cytosol (GO:0005829);; Biological Process: protein folding (GO:0006457);; Biological Process: methionine biosynthetic process (GO:0009086);; Cellular Component: chloroplast thylakoid lumen (GO:0009543);; Cellular Component: membrane (GO:0016020);; ","K01802|1.75581e-64|sly:778250|CIP3; CONSTANS interacting protein 3; K01802 peptidylprolyl isomerase [EC:5.2.1.8] (A)","--","[O]","Posttranslational modification, protein turnover, chaperones","Peptidyl-prolyl cis-trans isomerase FKBP12 GN=MSJ1.19 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0019043","lncRNA_target",2627,2513,1805,1668,32.202744,32.707081,22.238413,22.804935,0.0895180165871003,-0.581699352192847,"down","--","--","Biological Process: respiratory burst involved in defense response (GO:0002679);; Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nuclear pore (GO:0005643);; Biological Process: response to water deprivation (GO:0009414);; Biological Process: abscisic acid-activated signaling pathway (GO:0009738);; Biological Process: ethylene-activated signaling pathway (GO:0009873);; Biological Process: response to chitin (GO:0010200);; Biological Process: intracellular signal transduction (GO:0035556);; Biological Process: hyperosmotic salinity response (GO:0042538);; Biological Process: positive regulation of transcription, DNA-templated (GO:0045893);; ","K14517|6.15302e-38|crb:CARUB_v10027108mg|hypothetical protein; K14517 ethylene-responsive transcription factor 2 (A)","Plant hormone signal transduction (ko04075)","--","--","Ethylene-responsive transcription factor 1A OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","K","Transcription","--"]
["EVM0027990","lncRNA_target",55663,52876,30622,29322,246.748047,248.879745,136.410126,144.953171,{"v":3.52436577084639e-07,"d":"3.52E-07"},-0.871256894689639,"down","[Q]","Secondary metabolites biosynthesis, transport and catabolism","Molecular Function: monooxygenase activity (GO:0004497);; Molecular Function: iron ion binding (GO:0005506);; Molecular Function: electron carrier activity (GO:0009055);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705);; Molecular Function: heme binding (GO:0020037);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","--","[QI]","Secondary metabolites biosynthesis, transport and catabolism;; Lipid transport and metabolism","Beta-amyrin 28-oxidase OS=Panax ginseng (Korean ginseng) PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","--"]
["EVM0009713","lncRNA_target",1108,963,555,584,19.351786,17.856348,9.74057,11.371427,0.0384510040992977,-0.872104384147394,"down","--","--","--","--","--","--","--","Transcription factor IBH1 OS=Oryza sativa subsp. indica (Rice) PE=3 SV=1","K","Transcription","--"]
["EVM0016590","lncRNA_target",11978,10656,11662,10692,89.344872,84.393822,87.41552,88.939331,0.981563647905726,-0.032774803451234,"down","--","--","Cellular Component: extracellular region (GO:0005576);; Cellular Component: plasma membrane (GO:0005886);; ","--","--","--","--","--","S","Function unknown","--"]
["EVM0001393","lncRNA_target",982,849,500,518,11.426702,10.480182,5.840209,6.711294,0.0562650779533144,-0.856862869200158,"down","[KAD]","Transcription;; RNA processing and modification;; Cell cycle control, cell division, chromosome partitioning","Molecular Function: DNA binding (GO:0003677);; Molecular Function: chromatin binding (GO:0003682);; ","--","--","--","--","Transcription factor CPC GN=CPC OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","K","Transcription","--"]
["EVM0027369","lncRNA_target",2823,5095,4534,4252,12.945551,24.792471,20.900079,21.749263,0.969699289800496,0.121132943776087,"up","--","--","--","K03245|4.26804e-52|cit:102610104|eukaryotic translation initiation factor 3 subunit J-like; K03245 translation initiation factor 3 subunit J (A)","RNA transport (ko03013)","[J]","Translation, ribosomal structure and biogenesis","--","J","Translation, ribosomal structure and biogenesis","--"]
["EVM0020383","lncRNA_target",1523,912,1075,1158,9.278737,6.042699,6.753226,8.009615,0.960104104690802,-0.125801490872841,"down","--","--","--","--","--","[I]","Lipid transport and metabolism","Phosphatidylinositol/phosphatidylcholine transfer protein SFH1 GN=T4L20.160 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","I","Lipid transport and metabolism","--"]
["EVM0013376","lncRNA_target",2482,2347,2931,2509,11.37597,11.414577,13.499573,12.822827,0.885597919515046,0.153372642636682,"up","--","--","--","--","--","[K]","Transcription","Trihelix transcription factor PTL GN=PTL OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","K","Transcription","--"]
["EVM0020387","lncRNA_target",928,805,838,719,4.549692,4.192063,4.127872,3.931639,0.918508532030714,-0.171066998994839,"down","[Q]","Secondary metabolites biosynthesis, transport and catabolism","Molecular Function: monooxygenase activity (GO:0004497);; Molecular Function: iron ion binding (GO:0005506);; Molecular Function: electron carrier activity (GO:0009055);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705);; Molecular Function: heme binding (GO:0020037);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","--","[QI]","Secondary metabolites biosynthesis, transport and catabolism;; Lipid transport and metabolism","Beta-amyrin 28-oxidase OS=Panax ginseng (Korean ginseng) PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","--"]
["EVM0010389","lncRNA_target",3411,3458,3416,2991,20.19948,21.747742,20.332306,19.75757,0.917108946026128,-0.119687377824152,"down","[O]","Posttranslational modification, protein turnover, chaperones","Molecular Function: ATP binding (GO:0005524);; Biological Process: ATP catabolic process (GO:0006200);; Biological Process: rRNA processing (GO:0006364);; Biological Process: tryptophan catabolic process (GO:0006569);; Biological Process: transport (GO:0006810);; Biological Process: aromatic amino acid family biosynthetic process (GO:0009073);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: indoleacetic acid biosynthetic process (GO:0009684);; Biological Process: embryo development ending in seed dormancy (GO:0009793);; Biological Process: chloroplast relocation (GO:0009902);; Biological Process: thylakoid membrane organization (GO:0010027);; Biological Process: photosystem II assembly (GO:0010207);; Biological Process: vegetative to reproductive phase transition of meristem (GO:0010228);; Molecular Function: polyamine-transporting ATPase activity (GO:0015417);; Biological Process: iron-sulfur cluster assembly (GO:0016226);; Biological Process: cysteine biosynthetic process (GO:0019344);; Biological Process: glucosinolate biosynthetic process (GO:0019761);; Biological Process: regulation of protein dephosphorylation (GO:0035304);; Biological Process: transcription from plastid promoter (GO:0042793);; Biological Process: positive regulation of transcription, DNA-templated (GO:0045893);; Biological Process: ovule development (GO:0048481);; ","K09013|2.7966e-164|sot:102591937|ABC transporter I family member 6, chloroplastic-like; K09013 Fe-S cluster assembly ATP-binding protein (A)","--","--","--","ABC transporter I family member 6, chloroplastic (Precursor) OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","--"]
["EVM0026555","lncRNA_target",593,570,658,629,2.057336,2.101478,2.29594,2.432621,0.95693822174907,0.131115972807437,"up","--","--","--","--","--","[T]","Signal transduction mechanisms","Putative late blight resistance protein homolog R1B-16 GN=R1B-16 OS=Solanum demissum (Wild potato) PE=3 SV=1","T","Signal transduction mechanisms","--"]
["EVM0025380","lncRNA_target",577,550,588,504,1.198145,1.20933,1.235903,1.153072,0.987991425777548,-0.064152314169848,"down","--","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0017015","lncRNA_target",3752,3967,3339,3166,16.785908,18.844429,15.00827,15.793835,0.618362540622054,-0.264253769311785,"down","[K]","Transcription","Molecular Function: RNA binding (GO:0003723);; Cellular Component: nucleolus (GO:0005730);; Cellular Component: small nucleolar ribonucleoprotein complex (GO:0005732);; Cellular Component: cytosol (GO:0005829);; ","K11086|8.63268e-64|sly:101262959|small nuclear ribonucleoprotein-associated proteins B and B'-like; K11086 small nuclear ribonucleoprotein B and B' (A)","Spliceosome (ko03040)","[K]","Transcription","Sm-like protein LSM3B {ECO:0000305} OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","A","RNA processing and modification","--"]
["EVM0021995","lncRNA_target",297,0,242,0,1.799427,0,1.472199,0,0.994165978854972,-0.336763031385563,"down","--","--","Biological Process: signal transduction (GO:0007165);; Biological Process: regulation of cellular metabolic process (GO:0031323);; Biological Process: regulation of defense response (GO:0031347);; Biological Process: innate immune response (GO:0045087);; Biological Process: response to other organism (GO:0051707);; Biological Process: organic substance metabolic process (GO:0071704);; ","--","--","--","--","--","S","Function unknown","--"]
["EVM0012672","lncRNA_target",2431,2572,2066,2203,5.454703,5.791632,4.649392,5.522531,0.743515227975694,-0.242236700919827,"down","--","--","Cellular Component: plastid (GO:0009536);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: response to stimulus (GO:0050896);; ","--","--","--","--","--","S","Function unknown","--"]
["EVM0008953","lncRNA_target",42342,41419,32799,31011,94.679174,107.226755,76.898233,83.849552,0.0651248438026413,-0.408300832714365,"down","[C]","Energy production and conversion","Biological Process: response to superoxide (GO:0000303);; Molecular Function: aconitate hydratase activity (GO:0003994);; Molecular Function: copper ion binding (GO:0005507);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: cell wall (GO:0005618);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: vacuolar membrane (GO:0005774);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: cytosol (GO:0005829);; Biological Process: gluconeogenesis (GO:0006094);; Biological Process: glycolytic process (GO:0006096);; Biological Process: citrate metabolic process (GO:0006101);; Biological Process: isocitrate metabolic process (GO:0006102);; Biological Process: protein N-linked glycosylation (GO:0006487);; Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511);; Biological Process: water transport (GO:0006833);; Biological Process: hyperosmotic response (GO:0006972);; Biological Process: Golgi organization (GO:0007030);; Biological Process: response to temperature stimulus (GO:0009266);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: response to salt stress (GO:0009651);; Biological Process: response to auxin (GO:0009733);; Biological Process: response to abscisic acid (GO:0009737);; Biological Process: response to carbohydrate (GO:0009743);; Biological Process: photorespiration (GO:0009853);; Biological Process: ethylene-activated signaling pathway (GO:0009873);; Biological Process: response to iron ion (GO:0010039);; Biological Process: photosynthesis (GO:0015979);; Biological Process: response to cadmium ion (GO:0046686);; Molecular Function: 4 iron, 4 sulfur cluster binding (GO:0051539);; Biological Process: response to misfolded protein (GO:0051788);; Biological Process: iron ion homeostasis (GO:0055072);; Biological Process: proteasome core complex assembly (GO:0080129);; ","K01681|0|cmo:103495599|aconitate hydratase, cytoplasmic; K01681 aconitate hydratase [EC:4.2.1.3] (A)","Citrate cycle (TCA cycle) (ko00020);; Glyoxylate and dicarboxylate metabolism (ko00630);; Carbon metabolism (ko01200);; 2-Oxocarboxylic acid metabolism (ko01210);; Biosynthesis of amino acids (ko01230)","[AJ]","RNA processing and modification;; Translation, ribosomal structure and biogenesis","Aconitate hydratase 2, mitochondrial (Precursor) GN=ACO2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","C","Energy production and conversion","--"]
["EVM0021215","lncRNA_target",28131,25310,59108,57447,170.936981,163.293579,360.924652,389.288208,{"v":1.8568847044189e-11,"d":"1.86E-11"},1.11195191040869,"up","[G]","Carbohydrate transport and metabolism","Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Cellular Component: cell wall (GO:0005618);; Biological Process: cellular glucan metabolic process (GO:0006073);; Biological Process: regulation of meristem growth (GO:0010075);; Molecular Function: xyloglucan:xyloglucosyl transferase activity (GO:0016762);; Cellular Component: apoplast (GO:0048046);; ","K08235|8.64213e-174|pop:POPTR_0019s14590g|POPTRDRAFT_915608; Xyloglucan endotransglucosylase/hydrolase protein 9 precursor; K08235 xyloglucan:xyloglucosyl transferase [EC:2.4.1.207] (A)","--","--","--","Xyloglucan endotransglucosylase/hydrolase protein 9 (Precursor) GN=F4C21.14 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","R","General function prediction only","--"]
["EVM0017564","lncRNA_target",8334,7677,7951,7816,38.198231,37.362194,36.620708,39.951439,0.978443724760155,-0.0353110172649114,"down","[I]","Lipid transport and metabolism","Molecular Function: acetyl-CoA C-acyltransferase activity (GO:0003988);; Cellular Component: nucleolus (GO:0005730);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: vacuolar membrane (GO:0005774);; Cellular Component: peroxisome (GO:0005777);; Cellular Component: cytosol (GO:0005829);; Biological Process: fatty acid beta-oxidation (GO:0006635);; Biological Process: toxin catabolic process (GO:0009407);; Cellular Component: chloroplast (GO:0009507);; Biological Process: response to wounding (GO:0009611);; Biological Process: jasmonic acid biosynthetic process (GO:0009695);; Biological Process: positive regulation of abscisic acid-activated signaling pathway (GO:0009789);; Biological Process: glyoxysome organization (GO:0010111);; Biological Process: proteasome-mediated ubiquitin-dependent protein catabolic process (GO:0043161);; Biological Process: response to misfolded protein (GO:0051788);; Biological Process: proteasome core complex assembly (GO:0080129);; ","K07513|0|sot:102578706|3-ketoacyl-CoA thiolase 2, peroxisomal-like; K07513 acetyl-CoA acyltransferase 1 [EC:2.3.1.16] (A)","Fatty acid degradation (ko00071);; Valine, leucine and isoleucine degradation (ko00280);; alpha-Linolenic acid metabolism (ko00592);; Biosynthesis of unsaturated fatty acids (ko01040);; Fatty acid metabolism (ko01212);; Peroxisome (ko04146)","[I]","Lipid transport and metabolism","3-ketoacyl-CoA thiolase 2, peroxisomal (Precursor) GN=F25I18.11 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","I","Lipid transport and metabolism","--"]
["EVM0018057","lncRNA_target",2538,2433,2025,1876,23.221859,23.636114,18.618418,19.144499,0.462538049980623,-0.365764477156887,"down","--","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0024846","lncRNA_target",120,115,117,86,0.643243,0.640763,0.637472,0.515268,0.956871037426186,-0.235209798000717,"down","--","--","--","--","--","--","--","--","R","General function prediction only","--"]
["EVM0025474","lncRNA_target",509,407,750,746,1.670523,1.353366,2.361731,2.6055,0.229040488158269,0.697994800465618,"up","--","--","--","--","--","--","--","BTB/POZ domain-containing protein At3g22104 GN=At3g22104 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","--"]
["EVM0019113","lncRNA_target",248,321,335,316,2.128972,2.926017,2.89028,3.025514,0.94553755941719,0.172320901228642,"up","--","--","Molecular Function: transcription regulatory region sequence-specific DNA binding (GO:0000976);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K09338|5.88523e-37|cmo:103483152|homeobox-leucine zipper protein ATHB-7; K09338 homeobox-leucine zipper protein (A)","--","[K]","Transcription","Homeobox-leucine zipper protein ATHB-12 GN=ATHB-12 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","K","Transcription","--"]
["EVM0001194","lncRNA_target",1182,918,1286,957,2.703571,2.363478,2.612113,2.307469,0.971901413024445,0.0759647400959842,"up","--","--","--","--","--","[T]","Signal transduction mechanisms","Late blight resistance protein R1-A GN=R1A OS=Solanum demissum (Wild potato) PE=3 SV=1","T","Signal transduction mechanisms","--"]
["EVM0007051","lncRNA_target",3754,3290,3667,3144,16.004722,14.885501,15.721575,14.960981,0.965173658904812,-0.0653389403277031,"down","--","--","--","--","--","[T]","Signal transduction mechanisms","--","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0002027","lncRNA_target",4791,4656,4049,3221,8.440656,10.92029,8.291471,6.625127,0.223587304348752,-0.399528214267214,"down","[S]","Function unknown","Cellular Component: integral component of membrane (GO:0016021);; ","K13519|0|sot:102606352|lysophospholipid acyltransferase 1-like; K13519 lysophospholipid acyltransferase [EC:2.3.1.51 2.3.1.23 2.3.1.-] (A)","Glycerolipid metabolism (ko00561);; Glycerophospholipid metabolism (ko00564);; Ether lipid metabolism (ko00565)","[S]","Function unknown","Lysophospholipid acyltransferase 1 GN=T12C24.17 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","I","Lipid transport and metabolism","--"]
["EVM0012076","lncRNA_target",5666,5204,6038,5112,11.263577,10.826946,11.708481,11.885519,0.994979677361812,0.0184323271055709,"up","[P]","Inorganic ion transport and metabolism","Molecular Function: copper-exporting ATPase activity (GO:0004008);; Molecular Function: calcium-transporting ATPase activity (GO:0005388);; Molecular Function: ATP binding (GO:0005524);; Biological Process: ATP catabolic process (GO:0006200);; Biological Process: ATP biosynthetic process (GO:0006754);; Biological Process: calcium ion transport (GO:0006816);; Biological Process: cellular copper ion homeostasis (GO:0006878);; Biological Process: response to toxic substance (GO:0009636);; Biological Process: response to light intensity (GO:0009642);; Cellular Component: chloroplast envelope (GO:0009941);; Molecular Function: cadmium-transporting ATPase activity (GO:0015434);; Molecular Function: zinc transporting ATPase activity (GO:0015633);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: zinc ion homeostasis (GO:0055069);; Biological Process: copper ion export (GO:0060003);; ","--","--","[P]","Inorganic ion transport and metabolism","Probable cadmium/zinc-transporting ATPase HMA1, chloroplastic (Precursor) GN=HMA1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","P","Inorganic ion transport and metabolism","--"]
["EVM0009235","lncRNA_target",129,154,255,159,0.63109,0.639553,1.12055,1.122977,0.730560896742903,0.514526266834559,"up","--","--","Cellular Component: plastid (GO:0009536);; Cellular Component: membrane (GO:0016020);; Biological Process: response to stimulus (GO:0050896);; ","--","--","--","--","--","S","Function unknown","--"]
["EVM0020216","lncRNA_target",19847,20517,20735,20754,54.243775,58.439636,57.717032,61.540771,0.991890958146655,0.0246316780546562,"up","[I]","Lipid transport and metabolism","Cellular Component: vacuole (GO:0005773);; Biological Process: unsaturated fatty acid biosynthetic process (GO:0006636);; Biological Process: phosphatidylglycerol biosynthetic process (GO:0006655);; Biological Process: pollen development (GO:0009555);; Biological Process: thylakoid membrane organization (GO:0010027);; Biological Process: chlorophyll biosynthetic process (GO:0015995);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: carotenoid biosynthetic process (GO:0016117);; Biological Process: sterol biosynthetic process (GO:0016126);; Molecular Function: cycloartenol synthase activity (GO:0016871);; Biological Process: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway (GO:0019288);; Biological Process: pentacyclic triterpenoid biosynthetic process (GO:0019745);; ","K01853|0|pper:PRUPE_ppa001844mg|hypothetical protein; K01853 cycloartenol synthase [EC:5.4.99.8] (A)","Steroid biosynthesis (ko00100)","[I]","Lipid transport and metabolism","Cycloartenol Synthase GN=OSCPNX1 OS=Panax ginseng (Korean ginseng) PE=1 SV=1","I","Lipid transport and metabolism","--"]
["EVM0000372","lncRNA_target",753,955,867,646,1.498143,1.977578,1.723181,1.555394,0.907978402818867,-0.204495939319174,"down","[R]","General function prediction only","Cellular Component: plastid (GO:0009536);; ","--","--","[H]","Coenzyme transport and metabolism","--","H","Coenzyme transport and metabolism","--"]
["EVM0007548","lncRNA_target",1101,1005,1041,1043,2.764032,2.613072,2.550482,2.98171,0.995372159427063,-0.0274494371549838,"down","[J]","Translation, ribosomal structure and biogenesis","Molecular Function: aminoacyl-tRNA editing activity (GO:0002161);; Molecular Function: leucine-tRNA ligase activity (GO:0004823);; Molecular Function: ATP binding (GO:0005524);; Biological Process: leucyl-tRNA aminoacylation (GO:0006429);; Biological Process: regulation of translational fidelity (GO:0006450);; ","K01869|0|tcc:TCM_030285|TRNA synthetase class I (I, L, M and V) family protein isoform 1; K01869 leucyl-tRNA synthetase [EC:6.1.1.4] (A)","Aminoacyl-tRNA biosynthesis (ko00970)","[J]","Translation, ribosomal structure and biogenesis","Valine--tRNA ligase GN=VALRS OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","J","Translation, ribosomal structure and biogenesis","--"]
["EVM0003495","lncRNA_target",539,462,449,331,1.213072,1.098334,1.013785,0.836756,0.766340911704117,-0.381411824763656,"down","--","--","--","K11138|0|sot:102592718|uncharacterized LOC102592718; K11138 telomere-associated protein RIF1 (A)","--","--","--","--","S","Function unknown","--"]
["EVM0004649","lncRNA_target",27487,25006,26280,23319,46.971784,45.766245,47.820199,45.986148,0.902163558645693,-0.0982451335868544,"down","--","--","Cellular Component: membrane (GO:0016020);; ","--","--","[R]","General function prediction only","Calcium permeable stress-gated cation channel 1 GN=CSC1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","--"]
["EVM0016396","lncRNA_target",2593,3179,3876,3619,10.886305,14.17263,16.356234,16.949339,0.360581881494127,0.355750714270229,"up","--","--","Molecular Function: serine-type carboxypeptidase activity (GO:0004185);; Cellular Component: vacuole (GO:0005773);; Biological Process: proteolysis (GO:0006508);; ","K16296|0|rcu:RCOM_1627120|serine carboxypeptidase, putative (EC:3.4.16.5); K16296 serine carboxypeptidase-like clade I [EC:3.4.16.-] (A)","--","[OE]","Posttranslational modification, protein turnover, chaperones;; Amino acid transport and metabolism","Serine carboxypeptidase-like 20 (Precursor) GN=SCPL20 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0018414","lncRNA_target",3057,2516,2936,3467,13.730864,12.038408,13.30813,17.44816,0.861087440357457,0.195891754756987,"up","[F]","Nucleotide transport and metabolism","Molecular Function: phosphoribosylformylglycinamidine cyclo-ligase activity (GO:0004641);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: 'de novo' IMP biosynthetic process (GO:0006189);; ","K01933|0|sot:102577719|PURM; 5'-aminoimidazole ribonucleotide synthetase (EC:6.3.3.1); K01933 phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1] (A)","Purine metabolism (ko00230)","[F]","Nucleotide transport and metabolism","Phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic (Precursor) GN=PUR5 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","F","Nucleotide transport and metabolism","--"]
["EVM0001568","lncRNA_target",1723,1722,3281,2759,6.541702,6.818918,12.430947,11.613908,0.00517502397395852,0.789721393632698,"up","--","--","--","--","--","--","--","--","R","General function prediction only","--"]
["EVM0016895","lncRNA_target",5473,5567,5786,4993,12.033797,12.997397,12.782218,12.232341,0.970360622470672,-0.0543280197489717,"down","--","--","--","--","--","[R]","General function prediction only","Auxilin-related protein 2 GN=At4g12770 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0025426","lncRNA_target",8236,7298,5918,4869,36.975981,34.806873,26.760864,24.429904,0.0151062050876159,-0.544606562871569,"down","--","--","--","--","--","--","--","F-box protein At1g61340 GN=At1g61340 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","--"]
["EVM0010374","lncRNA_target",113,122,198,195,0.60545,0.697428,1.071788,1.169352,0.545186919355018,0.725341398701252,"up","[Q]","Secondary metabolites biosynthesis, transport and catabolism","Molecular Function: oxidoreductase activity (GO:0016491);; Molecular Function: metal ion binding (GO:0046872);; ","--","--","[Q]","Secondary metabolites biosynthesis, transport and catabolism","Cytochrome P450 71A1 GN=CYP71A1 OS=Persea americana (Avocado) PE=1 SV=2","Q","Secondary metabolites biosynthesis, transport and catabolism","--"]
["EVM0005887","lncRNA_target",3397,3102,3648,3113,14.726636,14.248847,15.544554,14.725038,0.984627508344197,0.0391570763767839,"up","--","--","--","--","--","[R]","General function prediction only","--","R","General function prediction only","--"]
["EVM0024432","lncRNA_target",1291,1279,1569,1355,7.226066,7.601212,8.825392,8.457343,0.901450094286839,0.166961166243897,"up","[G]","Carbohydrate transport and metabolism","Molecular Function: pectate lyase activity (GO:0030570);; ","K01728|0|vvi:100255011|probable pectate lyase 4; K01728 pectate lyase [EC:4.2.2.2] (A)","Pentose and glucuronate interconversions (ko00040)","--","--","Probable pectate lyase 4 (Precursor) GN=At1g30350 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","--"]
["EVM0012465","lncRNA_target",744,660,948,1012,5.566845,5.157247,6.993564,8.144589,0.498064775079865,0.471821334489415,"up","[F]","Nucleotide transport and metabolism","Biological Process: flavin-containing compound metabolic process (GO:0042726);; Molecular Function: FAD diphosphatase activity (GO:0047884);; ","K18453|3.46419e-127|sly:101263980|nudix hydrolase 23, chloroplastic; K18453 ADP-ribose/FAD diphosphatase [EC:3.6.1.13 3.6.1.18] (A)","Purine metabolism (ko00230);; Riboflavin metabolism (ko00740)","[L]","Replication, recombination and repair","Nudix hydrolase 23, chloroplastic (Precursor) GN=T6D20.4 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","L","Replication, recombination and repair","--"]
["EVM0001634","lncRNA_target",646,517,208,228,4.149638,3.47741,1.301491,1.578648,0.00199401221484728,-1.42180897144907,"down","[KAD]","Transcription;; RNA processing and modification;; Cell cycle control, cell division, chromosome partitioning","--","K09422|5.31239e-112|cic:CICLE_v10015729mg|hypothetical protein; K09422 myb proto-oncogene protein, plant (A)","--","[K]","Transcription","Transcription factor MYB39 GN=dl4925c OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","K","Transcription","--"]
["EVM0025127","lncRNA_target",90,73,146,89,0.65345,0.563005,1.072256,0.729344,0.834662523417037,0.501083485578751,"up","[S]","Function unknown","--","--","--","[S]","Function unknown","--","S","Function unknown","--"]
["EVM0021944","lncRNA_target",1525,1358,1609,1611,6.854354,6.567924,7.196536,8.085153,0.918023259634042,0.147702436437589,"up","[R]","General function prediction only","--","--","--","[B]","Chromatin structure and dynamics","Histone-lysine N-methyltransferase ATXR2 GN=MSD21.13 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","B","Chromatin structure and dynamics","--"]
["EVM0005339","lncRNA_target",8753,2180,9393,2240,51.7696,13.689731,55.829647,14.773875,0.998007575480397,0.0582635998628867,"up","[J]","Translation, ribosomal structure and biogenesis","Molecular Function: structural constituent of ribosome (GO:0003735);; Cellular Component: nucleolus (GO:0005730);; Cellular Component: vacuole (GO:0005773);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: translation (GO:0006412);; Molecular Function: 5S rRNA binding (GO:0008097);; Biological Process: cell proliferation (GO:0008283);; Cellular Component: chloroplast (GO:0009507);; Biological Process: adaxial/abaxial pattern specification (GO:0009955);; Biological Process: leaf morphogenesis (GO:0009965);; Biological Process: root morphogenesis (GO:0010015);; Cellular Component: cytosolic large ribosomal subunit (GO:0022625);; ","K02932|1.25572e-96|sot:102594641|60S ribosomal protein L5-like; K02932 large subunit ribosomal protein L5e (A)","Ribosome (ko03010)","[J]","Translation, ribosomal structure and biogenesis","60S ribosomal protein L5 GN=RPL5 OS=Cucumis sativus (Cucumber) PE=2 SV=1","J","Translation, ribosomal structure and biogenesis","--"]
["EVM0017537","lncRNA_target",245,260,477,351,1.459964,1.593335,2.946766,2.299109,0.368549616883456,0.687148521864895,"up","[R]","General function prediction only","--","--","--","[T]","Signal transduction mechanisms","--","T","Signal transduction mechanisms","--"]
["EVM0003007","lncRNA_target",176,200,195,238,0.947693,1.211727,1.032292,1.454014,0.953610851832293,0.193389361213736,"up","--","--","Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Biological Process: leaf morphogenesis (GO:0009965);; Biological Process: cell differentiation (GO:0030154);; Biological Process: positive regulation of transcription, DNA-templated (GO:0045893);; ","--","--","--","--","--","S","Function unknown","--"]
["EVM0016499","lncRNA_target",1076,985,1264,950,2.667328,2.574598,3.141504,2.704261,0.967018046485441,0.0810324013365117,"up","[RTKL]","General function prediction only;; Signal transduction mechanisms;; Transcription;; Replication, recombination and repair","Biological Process: cellular process (GO:0009987);; Molecular Function: kinase activity (GO:0016301);; ","--","--","[T]","Signal transduction mechanisms","Serine/threonine-protein kinase CTR1 GN=CTR1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","T","Signal transduction mechanisms","--"]
["EVM0027536","lncRNA_target",1265,1341,1923,1902,5.193084,6.363998,10.925813,11.634233,0.194126180648466,0.537639089163046,"up","--","--","--","--","--","[S]","Function unknown","--","S","Function unknown","--"]
["EVM0020557","lncRNA_target",797,688,4,655,2.489366,2.279415,0.012175,2.279681,0.688847134004343,-1.1164634771885,"down","--","--","Molecular Function: monooxygenase activity (GO:0004497);; Cellular Component: endosome (GO:0005768);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: trans-Golgi network (GO:0005802);; Biological Process: metabolic process (GO:0008152);; Biological Process: respiratory chain complex IV assembly (GO:0008535);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","[D]","Cell cycle control, cell division, chromosome partitioning","Cytochrome b561, DM13 and DOMON domain-containing protein At5g54830 (Precursor) GN=At5g54830 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","T","Signal transduction mechanisms","--"]
["EVM0025942","lncRNA_target",378,346,456,459,1.59292,1.580542,1.950644,2.070667,0.833149325398129,0.325583204876911,"up","--","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0010894","lncRNA_target",201,172,225,356,1.003578,0.69154,1.160135,2.002095,0.679581100167594,0.643915589462534,"up","[V]","Defense mechanisms","--","--","--","[R]","General function prediction only","MATE efflux family protein 1 GN=F11M15.20 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","R","General function prediction only","--"]
["EVM0013820","lncRNA_target",1258,1488,1403,1155,2.804164,3.906902,3.147425,2.828696,0.942760418080301,-0.127005642549892,"down","--","--","--","--","--","--","--","Uncharacterized protein At1g04910 GN=At1g04910 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","--"]
["EVM0022085","lncRNA_target",2020,1369,1799,1763,9.800019,7.046631,8.837797,9.382865,0.981292674578055,0.0651297781800321,"up","--","--","Cellular Component: mitochondrial envelope (GO:0005740);; Biological Process: respiratory gaseous exchange (GO:0007585);; Biological Process: response to temperature stimulus (GO:0009266);; Cellular Component: thylakoid (GO:0009579);; Biological Process: response to high light intensity (GO:0009644);; Biological Process: chloroplast organization (GO:0009658);; Molecular Function: alternative oxidase activity (GO:0009916);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: carotenoid biosynthetic process (GO:0016117);; Biological Process: electron transport chain (GO:0022900);; Biological Process: negative regulation of transcription, DNA-templated (GO:0045892);; Molecular Function: metal ion binding (GO:0046872);; Cellular Component: respiratory chain (GO:0070469);; ","--","--","--","--","Ubiquinol oxidase 4, chloroplastic/chromoplastic (Precursor) GN=T10I14_90 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","R","General function prediction only","--"]
["EVM0014385","lncRNA_target",694,800,1030,1217,3.757722,4.589315,5.626099,7.315513,0.277706960999459,0.577158686312628,"up","--","--","--","--","--","[T]","Signal transduction mechanisms","BAG family molecular chaperone regulator 2 GN=BAG2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","T","Signal transduction mechanisms","--"]
["EVM0020433","lncRNA_target",371,567,287,319,1.231742,1.635937,1.054627,1.366504,0.584293557279487,-0.649981397085466,"down","--","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0001471","lncRNA_target",3898,3792,4263,3603,22.954928,23.668639,25.263639,23.689691,0.997293318103007,0.0130829382101784,"up","--","--","Biological Process: vacuolar transport (GO:0007034);; Cellular Component: retromer complex (GO:0030904);; ","K18466|0|cit:102627912|vacuolar protein sorting-associated protein 26A-like; K18466 vacuolar protein sorting-associated protein 26 (A)","--","[U]","Intracellular trafficking, secretion, and vesicular transport","Vacuolar protein sorting-associated protein 26B GN=VPS26B OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","U","Intracellular trafficking, secretion, and vesicular transport","--"]
["EVM0025250","lncRNA_target",77,75,94,106,0.348105,0.361801,0.430925,0.535298,0.912315606704963,0.386304688163081,"up","--","--","--","--","--","[R]","General function prediction only","Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial (Precursor) GN=At1g12700 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1","R","General function prediction only","--"]
["EVM0020363","lncRNA_target",1038,1150,935,968,5.488776,6.610589,4.927759,5.903455,0.869673526163284,-0.216693488573904,"down","[O]","Posttranslational modification, protein turnover, chaperones","Molecular Function: ATP binding (GO:0005524);; Molecular Function: nucleoside-triphosphatase activity (GO:0017111);; ","--","--","[O]","Posttranslational modification, protein turnover, chaperones","Katanin p60 ATPase-containing subunit A1 {ECO:0000255|HAMAP-Rule:MF_03023} GN=At1g80350 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0008524","lncRNA_target",3516,3293,3591,3340,17.322512,17.655017,17.507179,18.386666,0.998007575480397,0.0101895744178599,"up","[J]","Translation, ribosomal structure and biogenesis","Cellular Component: ribonucleoprotein complex (GO:0030529);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Cellular Component: cytoplasmic part (GO:0044444);; ","--","--","[J]","Translation, ribosomal structure and biogenesis","60S ribosomal protein L2, mitochondrial GN=RPL2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1","J","Translation, ribosomal structure and biogenesis","--"]
["EVM0011033","lncRNA_target",93,130,125,84,0.422984,0.717659,0.682376,0.44472,0.987991425777548,-0.128692506168126,"down","[C]","Energy production and conversion","--","--","--","[C]","Energy production and conversion","Pyridoxal reductase, chloroplastic (Precursor) GN=PLR1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","C","Energy production and conversion","--"]
["EVM0021543","lncRNA_target",2549,2525,1482,1406,12.295721,12.985306,6.419528,6.899832,0.0052303454703084,-0.829011745089551,"down","--","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0003692","lncRNA_target",1136,1205,1631,1287,6.320475,7.119834,9.116424,7.977875,0.715526271946674,0.294054629684318,"up","--","--","--","--","--","--","--","NAC domain-containing protein 100 GN=NAC100 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","--"]
["EVM0013465","lncRNA_target",1432,1338,1868,1731,11.173744,11.082046,14.651447,15.064659,0.552870478722727,0.362202026778204,"up","--","--","Molecular Function: FMN binding (GO:0010181);; Molecular Function: oxidoreductase activity (GO:0016491);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","--","[K]","Transcription","--","K","Transcription","--"]
["EVM0002396","lncRNA_target",2067,1863,2174,2089,11.154943,10.673996,11.791183,12.576804,0.948709767459625,0.103867492671071,"up","--","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0005156","lncRNA_target",2533,2346,3066,2892,19.17001,18.850004,23.316166,24.406229,0.648231721085239,0.273539360543903,"up","[G]","Carbohydrate transport and metabolism","--","K01057|7.39582e-129|sly:101263711|probable 6-phosphogluconolactonase 4, chloroplastic; K01057 6-phosphogluconolactonase [EC:3.1.1.31] (A)","Pentose phosphate pathway (ko00030);; Carbon metabolism (ko01200)","[G]","Carbohydrate transport and metabolism","Probable 6-phosphogluconolactonase 5, chloroplastic (Precursor) GN=EMB2024 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","G","Carbohydrate transport and metabolism","--"]
["EVM0007042","lncRNA_target",11176,5893,12009,6505,12.214052,7.039357,13.143022,8.149388,0.989378056112072,0.0956368207654119,"up","--","--","--","--","--","[S]","Function unknown","MAG2-interacting protein 2 {ECO:0000303|PubMed:24118572} OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","S","Function unknown","--"]
["EVM0013466","lncRNA_target",1473,1470,1493,1289,5.616097,5.951815,5.719326,5.481283,0.959594894892975,-0.10054678569644,"down","[S]","Function unknown","--","--","--","--","--","Disease resistance RPP13-like protein 4 GN=RPP13L4 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","S","Function unknown","--"]
["EVM0024395","lncRNA_target",12789,11757,10987,9580,33.676527,32.072186,28.106924,27.533862,0.393387785094002,-0.272418927407089,"down","[R]","General function prediction only","Cellular Component: endoplasmic reticulum (GO:0005783);; Cellular Component: Golgi apparatus (GO:0005794);; Biological Process: lipopolysaccharide core region biosynthetic process (GO:0009244);; Molecular Function: transferase activity, transferring phosphorus-containing groups (GO:0016772);; Biological Process: endoplasmic reticulum unfolded protein response (GO:0030968);; ","K08869|0|vvi:100242392|uncharacterized LOC100242392; K08869 aarF domain-containing kinase (A)","--","[R]","General function prediction only","Putative ABC1 protein At2g40090 (Precursor) GN=At2g40090 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","R","General function prediction only","--"]
["EVM0018394","lncRNA_target",3100,2785,4272,3871,9.89724,9.532362,13.753184,13.949344,0.153663190384922,0.453083999104961,"up","[S]","Function unknown","Biological Process: transmembrane transport (GO:0055085);; ","--","--","--","--","Metal-nicotianamine transporter YSL3 GN=YSL3 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","P","Inorganic ion transport and metabolism","--"]
["EVM0011305","lncRNA_target",114,0,169,176,0.361636,0,0.55542,0.638985,0.265883551564185,1.62859413669662,"up","[Z]","Cytoskeleton","Molecular Function: actin binding (GO:0003779);; Molecular Function: calcium ion binding (GO:0005509);; Biological Process: actin filament-based movement (GO:0030048);; Biological Process: Golgi localization (GO:0051645);; Biological Process: mitochondrion localization (GO:0051646);; Biological Process: peroxisome localization (GO:0060151);; ","--","--","[Z]","Cytoskeleton","Fimbrin-2 {ECO:0000305} OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","Z","Cytoskeleton","--"]
["EVM0017808","lncRNA_target",13993,14119,1160,12841,135.921585,145.616333,11.313612,139.102524,0.721865976946027,-0.963567772610562,"down","[J]","Translation, ribosomal structure and biogenesis","Molecular Function: structural constituent of ribosome (GO:0003735);; Cellular Component: ribosome (GO:0005840);; Biological Process: translation (GO:0006412);; ","K02900|4.93177e-94|csv:101228988|60S ribosomal protein L27a-3-like; K02900 large subunit ribosomal protein L27Ae (A)","Ribosome (ko03010)","[J]","Translation, ribosomal structure and biogenesis","60S ribosomal protein L27a-3 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","J","Translation, ribosomal structure and biogenesis","--"]
["EVM0026035","lncRNA_target",1384,1661,1626,1137,5.146925,6.142532,5.50572,4.621065,0.917198394416332,-0.170784721266979,"down","--","--","Molecular Function: binding (GO:0005488);; Cellular Component: nucleus (GO:0005634);; Cellular Component: chloroplast (GO:0009507);; ","--","--","--","--","--","R","General function prediction only","--"]
["EVM0003558","lncRNA_target",11948,10552,12657,10904,12.249791,10.432928,14.799746,11.931155,0.966158727581445,0.0496647334580569,"up","[R]","General function prediction only","--","--","--","[BK]","Chromatin structure and dynamics;; Transcription","Probable histone-lysine N-methyltransferase ATXR3 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","K","Transcription","--"]
["EVM0025705","lncRNA_target",106,134,156,109,0.482272,0.646055,0.712615,0.555565,0.979703795803818,0.111244176555954,"up","--","--","--","--","--","[R]","General function prediction only","Pentatricopeptide repeat-containing protein At1g62930, chloroplastic (Precursor) GN=At1g62930 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","R","General function prediction only","--"]
["EVM0025388","lncRNA_target",2772,2650,2321,2411,20.052227,20.32903,16.866727,19.423637,0.790461145729715,-0.20842548565416,"down","--","--","Molecular Function: organic cyclic compound binding (GO:0097159);; Molecular Function: heterocyclic compound binding (GO:1901363);; ","--","--","--","--","--","R","General function prediction only","--"]
["EVM0005948","lncRNA_target",110,66,125,58,0.450709,0.286683,0.511903,0.262722,0.998007575480397,0.0272265338085688,"up","--","--","--","--","--","[R]","General function prediction only","Pentatricopeptide repeat-containing protein At1g62670, mitochondrial (Precursor) GN=At1g62670 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=2","R","General function prediction only","--"]
["EVM0015168","lncRNA_target",6553,5733,5862,5453,21.748543,20.199665,19.54957,20.181789,0.863880616458227,-0.132730798904447,"down","[T]","Signal transduction mechanisms","Molecular Function: translation elongation factor activity (GO:0003746);; Molecular Function: GTPase activity (GO:0003924);; Molecular Function: GTP binding (GO:0005525);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: GTP catabolic process (GO:0006184);; Biological Process: translational elongation (GO:0006414);; Biological Process: protein targeting to mitochondrion (GO:0006626);; ","K06207|0|vvi:100247278|translation factor GUF1 homolog, organellar chromatophore; K06207 GTP-binding protein (A)","--","[J]","Translation, ribosomal structure and biogenesis","Translation factor GUF1 homolog, chloroplastic {ECO:0000255|HAMAP-Rule:MF_03138} (Precursor) GN=VITISV_013255 OS=Vitis vinifera (Grape) PE=3 SV=1","J","Translation, ribosomal structure and biogenesis","--"]
["EVM0026926","lncRNA_target",3477,3306,1789,1836,14.532521,14.725516,7.517839,8.571623,0.000314898950420261,-0.91629426504694,"down","[GEPR]","Carbohydrate transport and metabolism;; Amino acid transport and metabolism;; Inorganic ion transport and metabolism;; General function prediction only","Cellular Component: nucleus (GO:0005634);; Cellular Component: vacuole (GO:0005773);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: carbohydrate transport (GO:0008643);; Biological Process: response to nematode (GO:0009624);; Molecular Function: symporter activity (GO:0015293);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);; Molecular Function: 2-alkenal reductase [NAD(P)] activity (GO:0032440);; Biological Process: transmembrane transport (GO:0055085);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","--","[R]","General function prediction only","Sugar carrier protein C GN=STC OS=Ricinus communis (Castor bean) PE=2 SV=1","R","General function prediction only","--"]
["EVM0003213","lncRNA_target",2453,2715,3004,2860,10.70097,12.428191,12.770937,13.915608,0.863576238067384,0.164043351503021,"up","--","--","--","--","--","--","--","Uncharacterized membrane protein At1g16860 GN=At1g16860 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","S","Function unknown","--"]
["EVM0019856","lncRNA_target",2126,2118,2424,2016,4.108862,4.582535,4.747005,4.603451,0.982531722712206,0.0445007899171604,"up","--","--","--","--","--","--","--","Serine/threonine-protein phosphatase 7 long form homolog GN=At1g48120 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","T","Signal transduction mechanisms","--"]
["EVM0026440","lncRNA_target",3633,3384,3608,3293,25.565641,25.284122,25.513622,25.840593,0.984177844438901,-0.040015523536837,"down","[T]","Signal transduction mechanisms","Molecular Function: protein tyrosine kinase activity (GO:0004713);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; ","K08851|2.51157e-144|pop:POPTR_0005s23450g|POPTRDRAFT_205531; hypothetical protein; K08851 TP53 regulating kinase and related kinases [EC:2.7.11.1] (A)","--","[R]","General function prediction only","--","T","Signal transduction mechanisms","--"]
["EVM0006995","lncRNA_target",1601,977,1432,1177,3.059295,1.860492,2.609059,2.56063,1,0.00664258209152393,"up","[RTKL]","General function prediction only;; Signal transduction mechanisms;; Transcription;; Replication, recombination and repair","--","--","--","[DT]","Cell cycle control, cell division, chromosome partitioning;; Signal transduction mechanisms","Extra-large guanine nucleotide-binding protein 1 GN=F26B6.11 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","T","Signal transduction mechanisms","--"]
["EVM0010837","lncRNA_target",1010,950,1352,2465,2.817699,3.222906,3.786785,5.757579,0.597664214695878,0.968614518696651,"up","[S]","Function unknown","Biological Process: protein targeting to mitochondrion (GO:0006626);; ","--","--","[R]","General function prediction only","--","S","Function unknown","--"]
["EVM0026984","lncRNA_target",280,290,211,169,4.844425,5.173042,3.702558,3.301377,0.587897356733614,-0.607734070472876,"down","--","--","Cellular Component: mitochondrial respiratory chain complex I (GO:0005747);; ","--","--","--","--","--","S","Function unknown","--"]
["EVM0025661","lncRNA_target",30461,29589,24649,24231,172.006317,177.406433,139.867523,152.589859,0.23149281922496,-0.311224132097181,"down","[R]","General function prediction only","Biological Process: ethylene biosynthetic process (GO:0009693);; Molecular Function: 1-aminocyclopropane-1-carboxylate oxidase activity (GO:0009815);; Biological Process: fruit ripening (GO:0009835);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors (GO:0016706);; Molecular Function: L-ascorbic acid binding (GO:0031418);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: oxidation-reduction process (GO:0055114);; ","K05933|3.13679e-176|pop:POPTR_0004s00460g|aminocyclopropane carboxylate oxidase family protein; K05933 aminocyclopropanecarboxylate oxidase [EC:1.14.17.4] (A)","Cysteine and methionine metabolism (ko00270)","[QR]","Secondary metabolites biosynthesis, transport and catabolism;; General function prediction only","1-aminocyclopropane-1-carboxylate oxidase GN=ACO OS=Actinidia deliciosa (Kiwi) PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","--"]
["EVM0006084","lncRNA_target",277,374,466,393,1.548442,2.48196,2.717422,2.669002,0.776193616305313,0.373326797560958,"up","[R]","General function prediction only","--","--","--","[T]","Signal transduction mechanisms","--","T","Signal transduction mechanisms","--"]
["EVM0000812","lncRNA_target",210,134,264,189,1.241796,0.829561,1.362304,1.072872,0.847228772057307,0.380854863158196,"up","[F]","Nucleotide transport and metabolism","Biological Process: purine ribonucleotide biosynthetic process (GO:0009152);; Molecular Function: hydroxymethyl-, formyl- and related transferase activity (GO:0016742);; ","K00601|3.42513e-124|vvi:100245619|phosphoribosylglycinamide formyltransferase, chloroplastic; K00601 phosphoribosylglycinamide formyltransferase [EC:2.1.2.2] (A)","Purine metabolism (ko00230);; One carbon pool by folate (ko00670)","[G]","Carbohydrate transport and metabolism","Phosphoribosylglycinamide formyltransferase, chloroplastic (Precursor) GN=PUR3 OS=Vigna unguiculata (Cowpea) PE=2 SV=2","F","Nucleotide transport and metabolism","--"]
["EVM0010098","lncRNA_target",60011,55123,55427,51141,309.102854,301.425551,287.078041,293.801364,0.859202866793943,-0.126827622051952,"down","[Z]","Cytoskeleton","Molecular Function: ATP binding (GO:0005524);; Cellular Component: cytoplasm (GO:0005737);; Cellular Component: cytoskeleton (GO:0005856);; ","--","--","[Z]","Cytoskeleton","Actin OS=Gossypium hirsutum (Upland cotton) PE=3 SV=1","Z","Cytoskeleton","--"]
["EVM0011887","lncRNA_target",631,605,699,679,4.521147,4.630393,5.319514,5.273979,0.948709767459625,0.142462302826662,"up","--","--","--","K18633|5.10401e-32|cmo:103485818|mitotic-spindle organizing protein 1A-like; K18633 mitotic-spindle organizing protein 1 (A)","--","--","--","Mitotic-spindle organizing protein 1B GN=T15G18.30 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","S","Function unknown","--"]
["EVM0007732","lncRNA_target",1963,1509,2080,1594,5.910733,4.464997,6.281404,6.310721,0.974032501531753,0.0637318056231,"up","[Z]","Cytoskeleton","Molecular Function: actin binding (GO:0003779);; Molecular Function: structural constituent of cytoskeleton (GO:0005200);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: cytosol (GO:0005829);; Cellular Component: Arp2/3 protein complex (GO:0005885);; Biological Process: multidimensional cell growth (GO:0009825);; Biological Process: trichome morphogenesis (GO:0010090);; Biological Process: Arp2/3 complex-mediated actin nucleation (GO:0034314);; ","K18584|0|sot:102600427|actin-related protein 3-like; K18584 actin-related protein 3 (A)","--","[Z]","Cytoskeleton","Actin-related protein 3 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","Z","Cytoskeleton","--"]
["EVM0004132","lncRNA_target",433,546,500,518,0.963634,1.292826,1.151232,1.274273,0.99534865871639,0.03824921875073,"up","[T]","Signal transduction mechanisms","Molecular Function: zinc ion binding (GO:0008270);; Molecular Function: ligase activity (GO:0016874);; Molecular Function: 2-alkenal reductase [NAD(P)] activity (GO:0032440);; Biological Process: oxidation-reduction process (GO:0055114);; ","K10143|0|vvi:100246063|E3 ubiquitin-protein ligase COP1-like; K10143 E3 ubiquitin-protein ligase RFWD2 [EC:6.3.2.19] (A)","Ubiquitin mediated proteolysis (ko04120);; Circadian rhythm - plant (ko04712)","--","--","E3 ubiquitin-protein ligase COP1 GN=COP1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0006668","lncRNA_target",744,569,743,627,5.797381,4.586348,5.653399,5.341415,0.993230998100268,0.0468784947218642,"up","--","--","--","K15131|1.54058e-69|sot:102599143|mediator of RNA polymerase II transcription subunit 11-like; K15131 mediator of RNA polymerase II transcription subunit 11 (A)","--","--","--","Mediator of RNA polymerase II transcription subunit 11 GN=T13O15 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","S","Function unknown","--"]
["EVM0010123","lncRNA_target",9820,9460,9655,8499,67.720345,69.272163,66.908394,65.364708,0.904518945839873,-0.104764311973302,"down","[C]","Energy production and conversion","Cellular Component: mitochondrial respiratory chain complex III (GO:0005750);; Molecular Function: ubiquinol-cytochrome-c reductase activity (GO:0008121);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: electron transport chain (GO:0022900);; Molecular Function: metal ion binding (GO:0046872);; Molecular Function: 2 iron, 2 sulfur cluster binding (GO:0051537);; ","K00411|3.53976e-150|pper:PRUPE_ppa009818mg|hypothetical protein; K00411 ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:1.10.2.2] (A)","Oxidative phosphorylation (ko00190)","[C]","Energy production and conversion","Cytochrome b-c1 complex subunit Rieske-3, mitochondrial (Precursor) OS=Nicotiana tabacum (Common tobacco) PE=2 SV=1","C","Energy production and conversion","--"]
["EVM0005122","lncRNA_target",24680,22849,24508,24756,103.88353,102.425066,103.731046,117.457117,0.978413543873246,0.0394023004298876,"up","--","--","Cellular Component: cell part (GO:0044464);; ","--","--","--","--","--","S","Function unknown","--"]
["EVM0013727","lncRNA_target",29486,27435,27197,26055,123.197551,132.455397,123.335423,111.145667,0.877701820752911,-0.110390338669481,"down","--","--","Biological Process: RNA methylation (GO:0001510);; Molecular Function: structural constituent of ribosome (GO:0003735);; Cellular Component: nucleolus (GO:0005730);; Biological Process: translation (GO:0006412);; Biological Process: embryo development ending in seed dormancy (GO:0009793);; Biological Process: protein ubiquitination (GO:0016567);; Cellular Component: cytosolic large ribosomal subunit (GO:0022625);; ","K02927|3.41023e-90|tcc:TCM_015479|Ubiquitin supergroup,Ribosomal protein L40e; K02927 large subunit ribosomal protein L40e (A)","Ribosome (ko03010)","[J]","Translation, ribosomal structure and biogenesis","60S ribosomal protein L40 (Precursor) GN=UBICEP52-7 OS=Nicotiana sylvestris (Wood tobacco) PE=2 SV=2","J","Translation, ribosomal structure and biogenesis","--"]
["EVM0019741","lncRNA_target",333,301,341,318,0.7841,0.741126,0.817436,0.837112,0.995895424471932,0.0412240776204452,"up","--","--","--","--","--","[R]","General function prediction only","Pentatricopeptide repeat-containing protein At4g13650 GN=PCMP-H42 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","R","General function prediction only","--"]
["EVM0026214","lncRNA_target",4633,4380,3434,2982,14.073828,14.216901,10.506931,10.051001,0.0704891982082616,-0.508342911913191,"down","--","--","--","--","--","--","--","--","K","Transcription","--"]
["EVM0014533","lncRNA_target",1910,2108,932,808,20.700727,24.25992,10.143545,9.756721,{"v":3.38698481970105e-05,"d":"3.39E-05"},-1.22880513933245,"down","--","--","Biological Process: respiratory burst involved in defense response (GO:0002679);; Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nuclear pore (GO:0005643);; Biological Process: response to water deprivation (GO:0009414);; Biological Process: abscisic acid-activated signaling pathway (GO:0009738);; Biological Process: ethylene-activated signaling pathway (GO:0009873);; Biological Process: response to chitin (GO:0010200);; Biological Process: intracellular signal transduction (GO:0035556);; Biological Process: hyperosmotic salinity response (GO:0042538);; Biological Process: positive regulation of transcription, DNA-templated (GO:0045893);; ","K09286|1.79165e-30|crb:CARUB_v10005497mg|hypothetical protein; K09286 EREBP-like factor (A)","--","--","--","Ethylene-responsive transcription factor 1A OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","K","Transcription","--"]
["EVM0008385","lncRNA_target",820,841,762,801,4.913131,5.34652,4.585318,5.348929,0.963732457094744,-0.100896681036397,"down","--","--","--","--","--","--","--","F-box protein At3g07870 GN=At3g07870 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","--"]
["EVM0009329","lncRNA_target",577,689,695,736,1.784449,2.161099,2.064313,2.381829,0.934886663644444,0.160560951341155,"up","--","--","Cellular Component: exocyst (GO:0000145);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; ","--","--","[U]","Intracellular trafficking, secretion, and vesicular transport","Exocyst complex component SEC3A GN=SEC3A OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","--"]
["EVM0013790","lncRNA_target",208,218,140,138,0.87311,1.008017,0.659484,0.650515,0.621214518727357,-0.631623927177708,"down","[R]","General function prediction only","--","K01950|0|sly:101245868|glutamine-dependent NAD(+) synthetase; K01950 NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1] (A)","Nicotinate and nicotinamide metabolism (ko00760)","[HR]","Coenzyme transport and metabolism;; General function prediction only","Glutamine-dependent NAD(+) synthetase GN=At1g55090 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","H","Coenzyme transport and metabolism","--"]
["EVM0027545","lncRNA_target",8356,6704,6773,7371,55.890522,47.612965,45.525211,54.982861,0.91598090610894,-0.0971908728125254,"down","[RTKL]","General function prediction only;; Signal transduction mechanisms;; Transcription;; Replication, recombination and repair","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; ","--","--","[T]","Signal transduction mechanisms","Serine/threonine-protein kinase HT1 GN=HT1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","T","Signal transduction mechanisms","--"]
["EVM0017775","lncRNA_target",6799,6319,6405,5158,28.093323,27.337542,26.59978,23.923848,0.711072765465607,-0.202271936901433,"down","[MG]","Cell wall/membrane/envelope biogenesis;; Carbohydrate transport and metabolism","Cellular Component: endosome (GO:0005768);; Cellular Component: trans-Golgi network (GO:0005802);; Biological Process: nucleotide-sugar metabolic process (GO:0009225);; Cellular Component: membrane (GO:0016020);; Biological Process: D-xylose metabolic process (GO:0042732);; Molecular Function: UDP-glucuronate decarboxylase activity (GO:0048040);; Molecular Function: coenzyme binding (GO:0050662);; ","--","--","[GM]","Carbohydrate transport and metabolism;; Cell wall/membrane/envelope biogenesis","UDP-glucuronic acid decarboxylase 1 GN=UXS1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","G","Carbohydrate transport and metabolism","--"]
["EVM0022501","lncRNA_target",130,123,123,77,0.399629,0.400848,0.378361,0.261229,0.9075073094279,-0.368288753433469,"down","--","--","--","--","--","--","--","Transcriptional corepressor SEUSS GN=SEU OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","--","--","--"]
["EVM0003696","lncRNA_target",5780,5355,6726,5835,55.101665,54.202061,64.435158,62.031094,0.816543308395044,0.156244128313443,"up","[J]","Translation, ribosomal structure and biogenesis","Molecular Function: structural constituent of ribosome (GO:0003735);; Cellular Component: cell wall (GO:0005618);; Biological Process: translation (GO:0006412);; Cellular Component: membrane (GO:0016020);; Cellular Component: cytosolic small ribosomal subunit (GO:0022627);; ","K02949|1.76879e-96|mtr:MTR_8g076830|40S ribosomal protein S11; K02949 small subunit ribosomal protein S11e (A)","Ribosome (ko03010)","[J]","Translation, ribosomal structure and biogenesis","40S ribosomal protein S11 GN=RPS11 OS=Glycine max (Soybean) PE=2 SV=2","J","Translation, ribosomal structure and biogenesis","--"]
["EVM0021130","lncRNA_target",730,877,884,846,3.661512,5.180557,4.246073,4.792357,0.968012433351262,0.0865838276113939,"up","--","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0003764","lncRNA_target",3396,3209,1681,1401,13.626261,13.67306,6.777637,6.270215,{"v":1.05756032401559e-05,"d":"1.06E-05"},-1.11910854776582,"down","--","--","Cellular Component: exocyst (GO:0000145);; Biological Process: exocytosis (GO:0006887);; ","K07195|0|sot:102592555|exocyst complex protein EXO70-like; K07195 exocyst complex component 7 (A)","--","[U]","Intracellular trafficking, secretion, and vesicular transport","Exocyst complex component EXO70A1 GN=EXO70A1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","--"]
["EVM0027808","lncRNA_target",1351,797,1172,1162,4.371645,2.948273,3.920343,4.003247,0.968012433351262,0.116385475595718,"up","--","--","--","--","--","[S]","Function unknown","--","S","Function unknown","--"]
["EVM0024237","lncRNA_target",1113,1562,1003,1689,6.015113,9.004603,5.428686,10.205894,1,0.00507992663929303,"up","--","--","Molecular Function: RNA binding (GO:0003723);; Molecular Function: metal ion binding (GO:0046872);; ","--","--","[R]","General function prediction only","Zinc finger CCCH domain-containing protein 14 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","R","General function prediction only","--"]
["EVM0020989","lncRNA_target",3760,3549,3451,3037,22.213501,22.417447,20.473993,20.039518,0.803329733823345,-0.189414275688828,"down","--","--","Biological Process: DNA metabolic process (GO:0006259);; Biological Process: meiosis I (GO:0007127);; ","K14851|7.66227e-36|vvi:100256799|ribosomal RNA-processing protein 17; K14851 ribosomal RNA-processing protein 17 (A)","--","[S]","Function unknown","--","S","Function unknown","--"]
["EVM0010422","lncRNA_target",151,246,214,208,2.116556,3.667217,3.023566,3.255088,0.991928610936116,0.0624526107812126,"up","--","--","Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: plasma membrane (GO:0005886);; Molecular Function: protein transporter activity (GO:0008565);; Biological Process: protein transport (GO:0015031);; ","K09481|2.82582e-22|sot:102598588|protein transport protein Sec61 subunit beta-like; K09481 protein transport protein SEC61 subunit beta (A)","Protein export (ko03060);; Protein processing in endoplasmic reticulum (ko04141);; Phagosome (ko04145)","[O]","Posttranslational modification, protein turnover, chaperones","Protein transport protein Sec61 subunit beta GN=At2g45070 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0004234","lncRNA_target",351,272,493,500,3.335907,2.743229,5.08395,5.295752,0.374781282357731,0.664210204612795,"up","--","--","Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Cellular Component: apoplast (GO:0048046);; ","--","--","--","--","36.4 kDa proline-rich protein GN=TPRP-F1 OS=Solanum lycopersicum (Tomato) PE=2 SV=1","R","General function prediction only","--"]
["EVM0014723","lncRNA_target",1194,1065,966,905,3.724844,3.290214,2.778868,2.71498,0.774629167273533,-0.285999246234965,"down","[RTKL]","General function prediction only;; Signal transduction mechanisms;; Transcription;; Replication, recombination and repair","Molecular Function: nucleotide binding (GO:0000166);; Molecular Function: protein kinase activity (GO:0004672);; Biological Process: protein phosphorylation (GO:0006468);; ","--","--","--","--","G-type lectin S-receptor-like serine/threonine-protein kinase At1g11330 (Precursor) GN=At1g11330 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=3","T","Signal transduction mechanisms","--"]
["EVM0003488","lncRNA_target",484,412,418,359,0.926923,0.828593,0.706489,0.647516,0.912701252773871,-0.221706750198182,"down","[L]","Replication, recombination and repair","--","--","--","[R]","General function prediction only","--","R","General function prediction only","--"]
["EVM0009020","lncRNA_target",4385,4314,4524,4673,9.117659,10.104877,9.270653,11.161276,0.96293641296617,0.0674471506092304,"up","[RTKL]","General function prediction only;; Signal transduction mechanisms;; Transcription;; Replication, recombination and repair","Biological Process: MAPK cascade (GO:0000165);; Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Biological Process: protein phosphorylation (GO:0006468);; ","K14510|0|cic:CICLE_v10013782mg|hypothetical protein; K14510 serine/threonine-protein kinase CTR1 [EC:2.7.11.1] (A)","Plant hormone signal transduction (ko04075)","[T]","Signal transduction mechanisms","Serine/threonine-protein kinase CTR1 GN=CTR1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","T","Signal transduction mechanisms","--"]
["EVM0007815","lncRNA_target",276,145,292,290,2.258258,1.049968,2.116098,2.165055,0.75638453558743,0.466158414881924,"up","--","--","--","--","--","[R]","General function prediction only","NADH kinase GN=NADK3 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","R","General function prediction only","--"]
["EVM0027786","lncRNA_target",24185,22615,23871,22146,91.148666,90.498398,90.405098,93.079071,0.973847924223085,-0.0398262975507091,"down","[G]","Carbohydrate transport and metabolism","Molecular Function: 6-phosphofructokinase activity (GO:0003872);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: 6-phosphofructokinase complex (GO:0005945);; Biological Process: fructose 6-phosphate metabolic process (GO:0006002);; Biological Process: glycolytic process (GO:0006096);; Biological Process: embryo development ending in seed dormancy (GO:0009793);; Cellular Component: pyrophosphate-dependent phosphofructokinase complex, beta-subunit complex (GO:0010318);; Biological Process: photosynthesis (GO:0015979);; Biological Process: cellular response to phosphate starvation (GO:0016036);; Biological Process: phosphorylation (GO:0016310);; Biological Process: galactolipid biosynthetic process (GO:0019375);; Molecular Function: diphosphate-fructose-6-phosphate 1-phosphotransferase activity (GO:0047334);; ","K00895|0|tcc:TCM_030310|Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta isoform 1; K00895 pyrophosphate--fructose-6-phosphate 1-phosphotransferase [EC:2.7.1.90] (A)","Fructose and mannose metabolism (ko00051)","[G]","Carbohydrate transport and metabolism","Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta {ECO:0000255|HAMAP-Rule:MF_03185} GN=PGSC0003DMG400016726 OS=Solanum tuberosum (Potato) PE=1 SV=3","G","Carbohydrate transport and metabolism","--"]
["EVM0012711","lncRNA_target",795,739,522,513,6.866455,6.774661,4.52305,4.934514,0.361355908211286,-0.581029075751903,"down","--","--","--","--","--","--","--","Probable E3 ubiquitin-protein ligase LUL4 GN=F28L1.8 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0009827","lncRNA_target",289,331,407,409,2.135728,2.625795,3.024695,3.390717,0.786290851793874,0.379198844643026,"up","--","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0025543","lncRNA_target",1197,1266,1055,1015,12.893177,14.494195,11.450601,12.144716,0.792523521695818,-0.267677840006421,"down","--","--","Cellular Component: mitochondrion (GO:0005739);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: root development (GO:0048364);; Biological Process: defense response to fungus (GO:0050832);; Biological Process: cell wall repair (GO:0071433);; ","--","--","--","--","--","S","Function unknown","--"]
["EVM0015673","lncRNA_target",188,179,53,75,0.95304,0.963122,0.266503,0.420587,0.0459014627305946,-1.52106668859714,"down","--","--","Biological Process: flavonoid biosynthetic process (GO:0009813);; Molecular Function: naringenin-chalcone synthase activity (GO:0016210);; ","K00660|0|vvi:100258106|CHS3; chalcone synthase; K00660 chalcone synthase [EC:2.3.1.74] (A)","Flavonoid biosynthesis (ko00941);; Circadian rhythm - plant (ko04712)","--","--","Chalcone synthase GN=CHS OS=Perilla frutescens (Beefsteak mint) PE=2 SV=1","H","Coenzyme transport and metabolism","--"]
["EVM0015837","lncRNA_target",8435,9557,8203,7651,69.60527,83.734879,68.02095,70.410461,0.676554318246931,-0.201959927356107,"down","--","--","--","--","--","--","--","--","S","Function unknown","--"]
["EVM0023193","lncRNA_target",3044,2702,2262,2141,15.90921,14.996036,11.881568,12.476892,0.334934576633944,-0.397735899750604,"down","--","--","--","--","--","--","--","Uncharacterized protein At4g15970 GN=At4g15970 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","--","--","--"]
["EVM0021683","lncRNA_target",5022,3723,4333,3799,11.770002,11.906358,9.617857,9.770854,0.906199269461112,-0.117294745496018,"down","--","--","--","--","--","[A]","RNA processing and modification","--","A","RNA processing and modification","--"]
["EVM0012706","lncRNA_target",116,228,196,169,0.772432,1.619948,1.317146,1.259908,0.994551809896852,0.051986281388967,"up","--","--","--","--","--","--","--","Probable disease resistance protein At4g19060 GN=At4g19060 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","R","General function prediction only","--"]
["EVM0010160","lncRNA_target",2567,2473,3053,2644,16.382213,16.718646,19.500926,19.41832,0.874591664643626,0.158267493434258,"up","--","--","Molecular Function: ubiquitin thiolesterase activity (GO:0004221);; Cellular Component: intracellular (GO:0005622);; Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511);; ","K05609|4.19873e-136|rcu:RCOM_0191600|Ubiquitin carboxyl-terminal hydrolase isozyme L3, putative (EC:3.4.19.12); K05609 ubiquitin carboxyl-terminal hydrolase L3 [EC:3.4.19.12] (A)","--","[O]","Posttranslational modification, protein turnover, chaperones","--","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0023613","lncRNA_target",365,429,525,474,3.209058,3.95264,4.669493,4.577047,0.831562483870511,0.309980092711361,"up","--","--","--","--","--","--","--","Putative B3 domain-containing protein Os03g0621600 GN=OSJNBb0111B07.17 OS=Oryza sativa subsp. japonica (Rice) PE=3 SV=1","K","Transcription","--"]
["EVM0000287","lncRNA_target",14222,13222,14099,13346,117.452292,116.466896,117.578073,123.976579,0.995372159427063,-0.0146101100013026,"down","--","--","Cellular Component: microtubule (GO:0005874);; ","K18635|9.00204e-30|sot:102587138|protein SPIRAL1-like 1-like; K18635 protein SPIRAL1 and related proteins (A)","--","--","--","Protein SPIRAL1-like 1 OS=Oryza sativa subsp. japonica (Rice) PE=3 SV=1","S","Function unknown","--"]
["EVM0003934","lncRNA_target",4384,4537,5623,4862,20.83744,22.892572,26.853582,25.770969,0.691417371704448,0.212933189101044,"up","[Q]","Secondary metabolites biosynthesis, transport and catabolism","Molecular Function: binding (GO:0005488);; Molecular Function: oxidoreductase activity (GO:0016491);; ","--","--","[Q]","Secondary metabolites biosynthesis, transport and catabolism","Ferruginol synthase {ECO:0000303|PubMed:23812755} OS=Salvia miltiorrhiza (Chinese sage) PE=1 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","--"]
["EVM0004760","lncRNA_target",3829,2998,3569,3110,21.297373,17.703417,19.947384,19.29019,0.97787643737622,-0.045444622454265,"down","--","--","Molecular Function: serine-type carboxypeptidase activity (GO:0004185);; Cellular Component: vacuole (GO:0005773);; Biological Process: proteolysis (GO:0006508);; ","K16296|0|rcu:RCOM_1627120|serine carboxypeptidase, putative (EC:3.4.16.5); K16296 serine carboxypeptidase-like clade I [EC:3.4.16.-] (A)","--","[OE]","Posttranslational modification, protein turnover, chaperones;; Amino acid transport and metabolism","Serine carboxypeptidase-like 20 (Precursor) GN=SCPL20 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0018266","lncRNA_target",4844,4870,5906,6033,33.151314,35.387848,40.619232,46.047108,0.468948691044631,0.283823726843157,"up","[Q]","Secondary metabolites biosynthesis, transport and catabolism","Molecular Function: carboxymethylenebutenolidase activity (GO:0008806);; ","K01061|3.85701e-153|sot:102585553|carboxymethylenebutenolidase homolog; K01061 carboxymethylenebutenolidase [EC:3.1.1.45] (A)","--","[R]","General function prediction only","--","G","Carbohydrate transport and metabolism","--"]
["EVM0012442","lncRNA_target",2837,2460,2583,2429,8.72294,8.169173,7.985651,8.623449,0.945000389799919,-0.093173155933122,"down","[I]","Lipid transport and metabolism","Cellular Component: vacuole (GO:0005773);; Biological Process: unsaturated fatty acid biosynthetic process (GO:0006636);; Biological Process: phosphatidylglycerol biosynthetic process (GO:0006655);; Biological Process: pollen development (GO:0009555);; Biological Process: thylakoid membrane organization (GO:0010027);; Biological Process: tetracyclic triterpenoid biosynthetic process (GO:0010686);; Biological Process: chlorophyll biosynthetic process (GO:0015995);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: carotenoid biosynthetic process (GO:0016117);; Biological Process: sterol biosynthetic process (GO:0016126);; Molecular Function: cycloartenol synthase activity (GO:0016871);; Biological Process: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway (GO:0019288);; Biological Process: pentacyclic triterpenoid biosynthetic process (GO:0019745);; ","K01853|0|vvi:100243389|cycloartenol Synthase; K01853 cycloartenol synthase [EC:5.4.99.8] (A)","Steroid biosynthesis (ko00100)","[I]","Lipid transport and metabolism","Cycloartenol Synthase GN=OSCPNX1 OS=Panax ginseng (Korean ginseng) PE=1 SV=1","I","Lipid transport and metabolism","--"]
["EVM0025997","lncRNA_target",3245,3184,2533,2720,17.557666,18.479827,13.613613,16.345062,0.538946274128157,-0.302920901416524,"down","--","--","Molecular Function: RNA binding (GO:0003723);; Molecular Function: metal ion binding (GO:0046872);; ","--","--","[R]","General function prediction only","Zinc finger CCCH domain-containing protein 44 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","R","General function prediction only","--"]
["EVM0011791","lncRNA_target",1513,1353,1589,1519,11.244211,10.670233,11.865588,12.586553,0.956521158778819,0.103466602469183,"up","--","--","Molecular Function: nucleotide binding (GO:0000166);; Molecular Function: nucleic acid binding (GO:0003676);; Molecular Function: TBP-class protein binding (GO:0017025);; ","K14785|1.06763e-98|vvi:100259435|pre-rRNA-processing protein ESF2; K14785 ESF2/ABP1 family protein (A)","--","[K]","Transcription","--","K","Transcription","--"]

{"sheet":"lncRNA_tran_Tar.annotation","index":2,"n_rows":12,"n_cols":24,"rows_kept":12,"flags":["formulas_cached_only"]}
["#ID","feature","L09_Count","L10_Count","L05_Count","L06_Count","L09_FPKM","L10_FPKM","L05_FPKM","L06_FPKM","FDR","log2FC","regulated","COG_class","COG_class_annotation","GO_annotation","KEGG_annotation","KEGG_pathway_annotation","KOG_class","KOG_class_annotation","Swiss-Prot_annotation","eggNOG_class","eggNOG_class_annotation","NR_annotation"]
["EVM0027751","lncRNA_target",15971,14807,15381,13799,62.871604,61.941434,60.723068,60.539717,0.911942849826622,-0.0933796220133063,"down","--","--","Cellular Component: nucleus (GO:0005634);; Biological Process: nucleosome assembly (GO:0006334);; ","K11279|1.01905e-159|vvi:100267878|nucleosome assembly protein 1;4-like; K11279 nucleosome assembly protein 1-like 1 (A)","--","[BD]","Chromatin structure and dynamics;; Cell cycle control, cell division, chromosome partitioning","Nucleosome assembly protein 1;2 (Precursor) GN=NAP1;2 OS=Nicotiana tabacum (Common tobacco) PE=1 SV=1","D","Cell cycle control, cell division, chromosome partitioning","--"]
["EVM0003773","lncRNA_target",1747,1939,2223,2033,4.255316,5.586325,5.700329,5.594608,0.852357835898476,0.187753524158641,"up","[R]","General function prediction only","--","--","--","--","--","Histone-binding protein MSI1 GN=MSI1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","T","Signal transduction mechanisms","--"]
["EVM0024477","lncRNA_target",28957,26738,26496,24362,66.846878,65.536842,61.464825,62.718018,0.791447759176846,-0.14659514424638,"down","--","--","Molecular Function: carboxypeptidase activity (GO:0004180);; Cellular Component: vacuolar membrane (GO:0005774);; Cellular Component: endoplasmic reticulum (GO:0005783);; Cellular Component: Golgi apparatus (GO:0005794);; Biological Process: protein glycosylation (GO:0006486);; Biological Process: N-terminal protein myristoylation (GO:0006499);; Cellular Component: plant-type cell wall (GO:0009505);; Molecular Function: carbohydrate binding (GO:0030246);; ","--","--","[O]","Posttranslational modification, protein turnover, chaperones","--","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0015401","lncRNA_target",2351,2272,1771,1570,4.973376,5.403568,4.312819,4.149467,0.233770383997869,-0.486320637720612,"down","[H]","Coenzyme transport and metabolism","--","K12501|2.8178e-173|sly:101261100|homogentisate solanesyltransferase, chloroplastic; K12501 homogentisate solanesyltransferase [EC:2.5.1.117] (A)","Ubiquinone and other terpenoid-quinone biosynthesis (ko00130)","--","--","Homogentisate solanesyltransferase, chloroplastic (Precursor) GN=MEC18 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","S","Function unknown","--"]
["EVM0027753","lncRNA_target",5024,5340,4944,3902,28.918562,32.685845,28.620068,25.075143,0.611962147157013,-0.252321377166072,"down","--","--","Cellular Component: membrane (GO:0016020);; ","--","--","[S]","Function unknown","--","S","Function unknown","--"]
["EVM0004789","lncRNA_target",3514,3714,4076,3937,28.702298,28.205796,28.114085,31.164273,0.894648749871412,0.132005851974701,"up","--","--","Cellular Component: membrane (GO:0016020);; ","--","--","[S]","Function unknown","--","S","Function unknown","--"]
["EVM0018581","lncRNA_target",1728,1537,1729,1448,8.478167,8.507505,8.755993,8.577256,0.980761007413002,-0.0573587863330701,"down","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: membrane fusion (GO:0006944);; Molecular Function: transcription factor binding (GO:0008134);; Biological Process: microsporogenesis (GO:0009556);; Biological Process: stomatal lineage progression (GO:0010440);; Molecular Function: protein homodimerization activity (GO:0042803);; Biological Process: ovule development (GO:0048481);; Biological Process: callose deposition in cell wall (GO:0052543);; ","--","--","[K]","Transcription","Agamous-like MADS-box protein AGL16 GN=AGL16 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","K","Transcription","--"]
["EVM0000667","lncRNA_target",298,647,294,270,0.613531,1.248921,0.477618,0.513412,0.790461145729715,-0.777814100350343,"down","--","--","--","--","--","[R]","General function prediction only","--","R","General function prediction only","--"]
["EVM0007981","lncRNA_target",460,446,440,478,3.010318,3.333886,2.883092,3.460029,1,0.00817378222312204,"up","--","--","--","K03039|1.60138e-21|pper:PRUPE_ppa007016mg|hypothetical protein; K03039 26S proteasome regulatory subunit N9 (A)","Proteasome (ko03050)","[O]","Posttranslational modification, protein turnover, chaperones","26S proteasome non-ATPase regulatory subunit 13 homolog A GN=RPN9A OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","--"]
["EVM0018784","lncRNA_target",617,653,288,323,2.128267,2.482769,1.030569,1.243206,0.0276730104544162,-1.06719269594338,"down","--","--","--","--","--","[R]","General function prediction only","--","R","General function prediction only","--"]
["EVM0022587","lncRNA_target",264,123,191,183,3.117587,1.459277,2.224727,2.424252,0.994979677361812,-0.0492528411643784,"down","--","--","Cellular Component: mitochondrion (GO:0005739);; Cellular Component: endoplasmic reticulum (GO:0005783);; Cellular Component: membrane (GO:0016020);; ","--","--","[S]","Function unknown","--","S","Function unknown","--"]

{"sheet":"circRNA_Tar.annotation","index":3,"n_rows":13,"n_cols":11,"rows_kept":13,"flags":["formulas_cached_only"]}
["#GeneID","COG_class","COG_class_annotation","GO_annotation","KEGG_annotation","KOG_class","KOG_class_annotation","Swissprot_annotation","eggNOG_class","eggNOG_class_annotation","nr_annotation"]
["EVM0022186","[Z]","Cytoskeleton ","Molecular Function: motor activity (GO:0003774);; Molecular Function: actin binding (GO:0003779);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein import into nucleus (GO:0006606);; Cellular Component: myosin complex (GO:0016459);; Biological Process: actin filament-based movement (GO:0030048);; Biological Process: Golgi localization (GO:0051645);; Biological Process: mitochondrion localization (GO:0051646);; Biological Process: peroxisome localization (GO:0060151);; ","K10357|0|sot:102595570|myosin-15-like; K10357 myosin V (A)","[Z]","Cytoskeleton ","Myosin-15 GN=XI-I OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","Z","Cytoskeleton","--"]
["EVM0003692","--","--","--","--","--","--","NAC domain-containing protein 100 GN=NAC100 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","--"]
["EVM0001274","--","--","--","K01527|1.19445e-76|gmx:100499834|uncharacterized LOC100499834; K01527 nascent polypeptide-associated complex subunit beta (A)","[K]","Transcription ","--","K","Transcription","--"]
["EVM0009466","--","--","--","--","[S]","Function unknown ","--","S","Function unknown","--"]
["EVM0007576","--","--","Biological Process: protein targeting to vacuole (GO:0006623);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: vesicle-mediated transport (GO:0016192);; ","--","--","--","--","S","Function unknown","--"]
["EVM0010735","--","--","Molecular Function: iron ion binding (GO:0005506);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: response to wounding (GO:0009611);; Biological Process: jasmonic acid biosynthetic process (GO:0009695);; Molecular Function: linoleate 13S-lipoxygenase activity (GO:0016165);; Biological Process: oxylipin biosynthetic process (GO:0031408);; Biological Process: lipid oxidation (GO:0034440);; Biological Process: growth (GO:0040007);; ","K00454|0|sly:101263024|lipoxygenase 6, chloroplastic; K00454 lipoxygenase [EC:1.13.11.12] (A)","--","--","Lipoxygenase 6, chloroplastic (Precursor) GN=LOX6 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","E","Amino acid transport and metabolism","--"]
["EVM0023887","--","--","Molecular Function: carbohydrate binding (GO:0030246);; ","--","--","--","Agglutinin-2 (Precursor) OS=Cladrastis kentukea (Yellow wood) PE=1 SV=1","T","Signal transduction mechanisms","--"]
["EVM0018445","[RTKL]","--","Biological Process: cellular process (GO:0009987);; Molecular Function: kinase activity (GO:0016301);; ","--","--","--","G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 (Precursor) GN=At4g27290 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=4","T","Signal transduction mechanisms","--"]
["EVM0012017","[M]","Cell wall/membrane/envelope biogenesis ","Cellular Component: membrane (GO:0016020);; Molecular Function: transferase activity, transferring glycosyl groups (GO:0016757);; Cellular Component: cell part (GO:0044464);; ","--","--","--","Cellulose synthase-like protein E6 GN=P0556A05.32 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1","S","Function unknown","--"]
["EVM0019121","[RTKL]","--","Molecular Function: protein tyrosine kinase activity (GO:0004713);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Molecular Function: carbohydrate binding (GO:0030246);; ","--","[T]","Signal transduction mechanisms ","C-type lectin receptor-like tyrosine-protein kinase At1g52310 (Precursor) GN=At1g52310 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","T","Signal transduction mechanisms","--"]
["EVM0011598","--","--","Cellular Component: plant-type cell wall (GO:0009505);; Molecular Function: kinase activity (GO:0016301);; Biological Process: phosphorylation (GO:0016310);; Molecular Function: adenyl nucleotide binding (GO:0030554);; ","--","[C]","Energy production and conversion ","SNF1-related protein kinase regulatory subunit gamma-1 GN=T8P19.40 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","C","Energy production and conversion","--"]
["EVM0013522","[G]","Carbohydrate transport and metabolism ","Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Biological Process: xylan catabolic process (GO:0045493);; ","--","--","--","Putative Pol polyprotein from transposon element Bs1 OS=Zea mays (Maize) PE=3 SV=1","R","General function prediction only","--"]