Novel	GenomicLocus	rsID	CHR	BP	nearestGene	non_effect_allele	effect_allele	MAF	beta	se	p	SNP_GBS	CHR_GBS	BP_GBS	effect_allele_GBS	other_allele_GBS	eaf_GBS	beta_GBS	se_GBS	pval_GBS	N_GBS	SNP_MG	CHR_MG	BP_MG	effect_allele_MG	other_allele_MG	eaf_MG	beta_MG	se_MG	pval_MG	N_MG	SNP_MS	CHR_MS	BP_MS	effect_allele_MS	other_allele_MS	eaf_MS	beta_MS	se_MS	pval_MS	N_MS	SNP_SLE	CHR_SLE	BP_SLE	effect_allele_SLE	other_allele_SLE	eaf_SLE	beta_SLE	se_SLE	pval_SLE	N_SLE	SNP_SCTD	CHR_SCTD	BP_SCTD	effect_allele_SCTD	other_allele_SCTD	eaf_SCTD	beta_SCTD	se_SCTD	pval_SCTD	N_SCTD
YES	1	rs55710223	1	19413544	UBR4	C	A	0.0208748	-11.37894888	0.677859133973	3.0588292767e-63	rs55710223	1	19413544	C	A	0.0332066	0.121518	0.168363	0.470442	492134	rs55710223	1	19413544	C	A	0.033199	0.451075	0.140843	0.00136154	496227	rs55710223	1	19413544	C	A	0.0331774	0.0257281	0.0730066	0.724533	498857	rs55710223	1	19413544	C	A	0.0331926	0.114288	0.233811	0.624978	499333	rs55710223	1	19413544	C	A	0.0331834	-0.0570469	0.0318483	0.0732605	500348
YES	2	rs76692181	1	27471887	SLC9A1	C	T	0.0168986	-8.0089227855	0.207246271524	1e-200	rs76692181	1	27471887	C	T	0.023716	-0.171509	0.199571	0.390125	492134	rs76692181	1	27471887	C	T	0.0237333	-0.28768	0.198026	0.146297	496227	rs76692181	1	27471887	C	T	0.0237225	-0.352346	0.0959365	0.000239994	498857	rs76692181	1	27471887	C	T	0.0237333	-0.117483	0.276195	0.670573	499333	rs76692181	1	27471887	C	T	0.0237372	0.0744252	0.0379594	0.0499195	500348
YES	3	rs78542455	1	27901368	AHDC1	T	C	0.0198807	5.19076653559	0.206561041843	2.37061272336e-139	rs78542455	1	27901368	T	C	0.0104006	-0.737204	0.308167	0.0167467	492134	rs78542455	1	27901368	T	C	0.0103997	-0.500465	0.295741	0.0906004	496227	rs78542455	1	27901368	T	C	0.010388	0.0789734	0.130857	0.546171	498857	rs78542455	1	27901368	T	C	0.0103865	-0.698218	0.400387	0.0811839	499333	rs78542455	1	27901368	T	C	0.0103865	0.125905	0.0570403	0.0272935	500348
YES	4	rs114362702	1	85738953	BCL10	G	A	0.0208748	-9.22121206842	0.328420137608	1.84515916763e-173	rs114362702	1	85738953	G	A	0.0196237	0.428638	0.216908	0.0481393	492134	rs114362702	1	85738953	G	A	0.0196655	0.346039	0.219817	0.115438	496227	rs114362702	1	85738953	G	A	0.0196393	0.0895591	0.094134	0.341401	498857	rs114362702	1	85738953	G	A	0.0196588	0.403784	0.289508	0.163098	499333	rs114362702	1	85738953	G	A	0.0196502	-0.0974813	0.0412559	0.0181351	500348
YES	5	rs111996812	1	220827883	MARK1	A	G	0.0208748	4.75206289641	0.171188002505	1.34479711423e-169	rs111996812	1	220827883	A	G	0.0108174	0.0200072	0.293954	0.945736	492134	rs111996812	1	220827883	A	G	0.0107897	-0.437751	0.288338	0.128967	496227	rs111996812	1	220827883	A	G	0.0108083	-0.197559	0.127135	0.1202	498857	rs111996812	1	220827883	A	G	0.0108078	-0.220558	0.399881	0.581251	499333	rs111996812	1	220827883	A	G	0.0108068	0.144496	0.0527221	0.00613042	500348
YES	6	rs73913776	2	5577275	AC107057.1	G	T	0.0218688	-11.2451203655	0.659231593773	3.05226828192e-65	rs73913776	2	5577275	G	T	0.0364204	0.233784	0.164243	0.15462	492134	rs73913776	2	5577275	G	T	0.0364187	0.179269	0.161538	0.267099	496227	rs73913776	2	5577275	G	T	0.0364099	0.147033	0.0719738	0.0410658	498857	rs73913776	2	5577275	G	T	0.0364096	0.105918	0.234153	0.651021	499333	rs73913776	2	5577275	G	T	0.0364058	-0.0746162	0.0307209	0.0151471	500348
YES	7	rs72832112	2	51453952	AC007682.1	A	G	0.0208748	7.37108942159	0.158608815568	1e-200	rs72832112	2	51453952	A	G	0.0365031	0.191644	0.162771	0.239044	492134	rs72832112	2	51453952	A	G	0.0364979	0.463831	0.13713	0.000718522	496227	rs72832112	2	51453952	A	G	0.0364786	0.0764448	0.0701791	0.27603	498857	rs72832112	2	51453952	A	G	0.0364815	-0.0942779	0.219768	0.667932	499333	rs72832112	2	51453952	A	G	0.036491	-0.0378458	0.0308048	0.219233	500348
YES	8	rs146179548	2	109761834	SH3RF3	C	G	0.0198807	-8.43231321354	0.24231104817	1e-200	rs146179548	2	109761834	C	G	0.0185471	0.476809	0.189406	0.0118228	492134	rs146179548	2	109761834	C	G	0.0185414	-0.0177871	0.224394	0.93682	496227	rs146179548	2	109761834	C	G	0.0185468	0.233035	0.097973	0.01738	498857	rs146179548	2	109761834	C	G	0.0185365	0.163395	0.319198	0.608726	499333	rs146179548	2	109761834	C	G	0.0185361	-0.11557	0.0443702	0.00919602	500348
YES	9	rs77952266	2	198639353	AC011997.1:BOLL	C	T	0.0139165	-10.0958192042	0.711558714449	1.08228018205e-45	rs77952266	2	198639353	C	T	0.0131491	0.221059	0.27262	0.417441	492134	rs77952266	2	198639353	C	T	0.0131503	0.745025	0.207447	0.000328912	496227	rs77952266	2	198639353	C	T	0.0131539	-0.164057	0.119437	0.169569	498857	rs77952266	2	198639353	C	T	0.0131608	-0.139138	0.383657	0.716858	499333	rs77952266	2	198639353	C	T	0.013153	-0.0303107	0.0514923	0.556099	500348
YES	10	rs141245276	3	29434041	RBMS3	T	C	0.0228628	-8.48002093487	0.265037564539	1e-200	rs141245276	3	29434041	T	C	0.0190004	0.223022	0.223175	0.317644	492134	rs141245276	3	29434041	T	C	0.0190076	0.271708	0.219528	0.215831	496227	rs141245276	3	29434041	T	C	0.0189962	0.166529	0.0964107	0.0841163	498857	rs141245276	3	29434041	T	C	0.0189929	-0.0515962	0.297627	0.86237	499333	rs141245276	3	29434041	T	C	0.0189904	-0.149492	0.0439973	0.000679391	500348
YES	11	rs6776465	3	143296624	SLC9A9	G	A	0.0228628	7.56398109688	0.171058747174	1e-200	rs6776465	3	143296624	G	A	0.0435941	-0.100256	0.147113	0.495562	492134	rs6776465	3	143296624	G	A	0.0435434	0.490461	0.123657	7.29995e-05	496227	rs6776465	3	143296624	G	A	0.0435589	0.0117603	0.0641891	0.854631	498857	rs6776465	3	143296624	G	A	0.0435635	-0.0962479	0.203413	0.636095	499333	rs6776465	3	143296624	G	A	0.0435531	-0.0038739	0.0279373	0.889716	500348
YES	12	rs151224098	4	7532184	SORCS2	C	T	0.0149105	-8.11403541934	0.234911831451	1e-200	rs151224098	4	7532184	C	T	0.0126775	0.434717	0.273557	0.112032	492134	rs151224098	4	7532184	C	T	0.0126982	0.522037	0.266783	0.0503733	496227	rs151224098	4	7532184	C	T	0.0126994	0.262284	0.11832	0.0266416	498857	rs151224098	4	7532184	C	T	0.0126939	0.485215	0.370576	0.190414	499333	rs151224098	4	7532184	C	T	0.0126995	-0.10556	0.0510705	0.0387391	500348
YES	13	rs564762	4	56284631	TMEM165	T	C	0.352883	-0.206271728459	0.0326262798288	2.57770067606e-10	rs564762	4	56284631	T	C	0.731352	-0.110438	0.0680785	0.104758	492134	rs564762	4	56284631	T	C	0.731317	-0.174204	0.06446	0.00688161	496227	rs564762	4	56284631	T	C	0.731303	0.0253706	0.0296586	0.392317	498857	rs564762	4	56284631	T	C	0.731344	-0.0752271	0.0931838	0.419495	499333	rs564762	4	56284631	T	C	0.73134	0.0388711	0.0129657	0.00271769	500348
YES	14	rs4392532	4	60375095	Y_RNA	C	T	0.285288	-0.128399921148	0.0163186182086	3.5946848154e-15	rs4392532	4	60375095	C	T	0.709544	0.0171735	0.0666173	0.796566	492134	rs4392532	4	60375095	C	T	0.709587	0.268157	0.0667357	5.86449e-05	496227	rs4392532	4	60375095	C	T	0.709549	0.00343052	0.0290392	0.905961	498857	rs4392532	4	60375095	C	T	0.70959	0.257909	0.0922007	0.00515383	499333	rs4392532	4	60375095	C	T	0.709573	-0.0197306	0.0125899	0.117073	500348
YES	15	rs7436021	4	76905472	SDAD1:RP11-630D6.5	G	A	0.422465	0.107486106186	0.0168614269586	1.83352106824e-10	rs7436021	4	76905472	G	A	0.562766	0.106146	0.0611103	0.0823967	492134	rs7436021	4	76905472	G	A	0.562819	0.0458467	0.0605906	0.449251	496227	rs7436021	4	76905472	G	A	0.562807	0.0356753	0.0266187	0.180169	498857	rs7436021	4	76905472	G	A	0.562802	0.0717651	0.0845179	0.395819	499333	rs7436021	4	76905472	G	A	0.562807	-0.0269567	0.0115659	0.0197688	500348
YES	16	rs10029041	4	177254572	SPCS3	A	G	0.0198807	-8.30510398536	0.223163083086	1e-200	rs10029041	4	177254572	A	G	0.010582	-0.0219394	0.299938	0.941689	492134	rs10029041	4	177254572	A	G	0.0105786	0.204957	0.285839	0.473352	496227	rs10029041	4	177254572	A	G	0.0105921	0.281703	0.128199	0.027993	498857	rs10029041	4	177254572	A	G	0.010588	0.180775	0.414052	0.662403	499333	rs10029041	4	177254572	A	G	0.0105874	-0.171734	0.0581833	0.00316133	500348
YES	17	rs115385547	5	16057480	MARCH11	G	A	0.0198807	-8.78587985176	0.292166718404	1.14455698976e-198	rs115385547	5	16057480	G	A	0.0130649	0.103566	0.268427	0.699626	492134	rs115385547	5	16057480	G	A	0.0130515	0.599561	0.266732	0.024589	496227	rs115385547	5	16057480	G	A	0.0130495	0.146976	0.114976	0.201137	498857	rs115385547	5	16057480	G	A	0.0130604	0.279065	0.35202	0.427921	499333	rs115385547	5	16057480	G	A	0.0130522	-0.108664	0.051059	0.0333204	500348
YES	18	rs180690604	5	19866975	CDH18	T	C	0.0218688	7.82270510219	0.207554508914	1e-200	rs180690604	5	19866975	T	C	0.0187421	-0.0506938	0.223377	0.820468	492134	rs180690604	5	19866975	T	C	0.0187598	-0.332446	0.220113	0.130956	496227	rs180690604	5	19866975	T	C	0.0187551	-0.149003	0.0968099	0.123773	498857	rs180690604	5	19866975	T	C	0.0187681	-0.306901	0.302522	0.310355	499333	rs180690604	5	19866975	T	C	0.018761	0.100067	0.0425105	0.0185763	500348
YES	19	rs1895024	7	133454333	EXOC4	A	C	0.0924453	0.459899806144	0.041228826207	6.78360397441e-29	rs1895024	7	133454333	A	C	0.111651	-0.245002	0.0968769	0.0114385	492134	rs1895024	7	133454333	A	C	0.11158	-0.150314	0.0956536	0.11608	496227	rs1895024	7	133454333	A	C	0.111523	0.0174547	0.0423686	0.680359	498857	rs1895024	7	133454333	A	C	0.111558	-0.0733974	0.135962	0.58931	499333	rs1895024	7	133454333	A	C	0.111546	0.0469127	0.0180294	0.00926787	500348
YES	20	rs35642230	8	17213764	MTMR7	T	C	0.245527	0.147229510543	0.0186622776343	3.04251266924e-15	rs35642230	8	17213764	T	C	0.31479	0.0411342	0.0650754	0.527322	492134	rs35642230	8	17213764	T	C	0.314669	0.0472709	0.0644127	0.463025	496227	rs35642230	8	17213764	T	C	0.314692	0.0369834	0.0284257	0.19324	498857	rs35642230	8	17213764	T	C	0.314682	0.0526553	0.0899734	0.558392	499333	rs35642230	8	17213764	T	C	0.314685	-0.0457772	0.0123791	0.000217345	500348
YES	21	rs10955255	8	102536405	GRHL2	G	A	0.411531	-0.063262253793	0.00917604539903	5.41371556406e-12	rs10955255	8	102536405	G	A	0.646315	0.00730445	0.0635981	0.908561	492134	rs10955255	8	102536405	G	A	0.646388	0.154886	0.0631569	0.0141906	496227	rs10955255	8	102536405	G	A	0.646371	0.0426847	0.0276916	0.123212	498857	rs10955255	8	102536405	G	A	0.646371	0.153703	0.0873204	0.0783718	499333	rs10955255	8	102536405	G	A	0.646332	-0.0241436	0.0120362	0.0448652	500348
YES	22	rs9297354	8	106021780	RP11-127H5.1	T	C	0.0487078	-0.121639933825	0.020319411126	2.1454864574e-09	rs9297354	8	106021780	T	C	0.107201	-0.106518	0.098315	0.278615	492134	rs9297354	8	106021780	T	C	0.107123	-0.242154	0.0979516	0.0134292	496227	rs9297354	8	106021780	T	C	0.10712	-0.0369872	0.0428092	0.387588	498857	rs9297354	8	106021780	T	C	0.107123	0.0517811	0.135124	0.701564	499333	rs9297354	8	106021780	T	C	0.107124	0.0482169	0.0183262	0.00851256	500348
YES	23	rs72678550	8	107408282	OXR1	T	C	0.0159046	11.4709374601	0.697483651837	8.93364220903e-61	rs72678550	8	107408282	T	C	0.021766	0.488521	0.172741	0.00468317	492134	rs72678550	8	107408282	T	C	0.0217591	0.414577	0.206868	0.045062	496227	rs72678550	8	107408282	T	C	0.0217899	0.0442784	0.0889781	0.618744	498857	rs72678550	8	107408282	T	C	0.0217937	0.563754	0.276672	0.0415872	499333	rs72678550	8	107408282	T	C	0.0217793	-0.06949	0.0392687	0.0767927	500348
YES	24	rs55691991	9	102811758	ERP44	A	T	0.0208748	7.70948261399	0.181695461626	1e-200	rs55691991	9	102811758	A	T	0.0342665	-0.0453482	0.166875	0.785814	492134	rs55691991	9	102811758	A	T	0.0342351	-0.345244	0.16438	0.0357043	496227	rs55691991	9	102811758	A	T	0.0342543	-0.156366	0.0731107	0.0324556	498857	rs55691991	9	102811758	A	T	0.0342198	-0.177644	0.230452	0.440795	499333	rs55691991	9	102811758	A	T	0.0342376	0.0597586	0.0315595	0.0582895	500348
YES	25	rs71482185	11	39926692	RP11-810F22.1	T	C	0.0218688	8.52825130025	0.272097962986	1e-200	rs71482185	11	39926692	T	C	0.0148994	-0.257042	0.252495	0.308674	492134	rs71482185	11	39926692	T	C	0.0149316	0.0534406	0.248275	0.829574	496227	rs71482185	11	39926692	T	C	0.0149091	-0.168071	0.108802	0.122409	498857	rs71482185	11	39926692	T	C	0.0149242	-0.800871	0.333654	0.0163814	499333	rs71482185	11	39926692	T	C	0.0149192	0.129633	0.0461488	0.00496924	500348
YES	26	rs73191114	12	109618591	ACACB	T	G	0.0218688	-5.06603846503	0.164023795274	1e-200	rs73191114	12	109618591	T	G	0.0126855	-0.225859	0.268423	0.400108	492134	rs73191114	12	109618591	T	G	0.0126746	0.498634	0.268884	0.0636737	496227	rs73191114	12	109618591	T	G	0.0126859	0.150165	0.117112	0.199758	498857	rs73191114	12	109618591	T	G	0.0126879	-0.21561	0.36591	0.555699	499333	rs73191114	12	109618591	T	G	0.0126801	-0.20155	0.0544981	0.000217045	500348
YES	27	rs9537344	13	56825502	SPATA2P1	A	G	0.090457	0.385412118322	0.0397071307865	2.83244135869e-22	rs9537344	13	56825502	A	G	0.874891	0.0481512	0.0914492	0.598516	492134	rs9537344	13	56825502	A	G	0.874805	0.192517	0.091089	0.0345581	496227	rs9537344	13	56825502	A	G	0.874828	0.00674129	0.0398047	0.865514	498857	rs9537344	13	56825502	A	G	0.874806	0.149941	0.125438	0.231954	499333	rs9537344	13	56825502	A	G	0.874802	-0.0421799	0.0172997	0.0147611	500348
YES	28	rs17098406	14	32428667	RP11-187E13.1	A	G	0.0198807	8.63005108716	0.276787892117	1e-200	rs17098406	14	32428667	A	G	0.0130179	-0.214497	0.263321	0.415311	492134	rs17098406	14	32428667	A	G	0.0130033	-0.300664	0.263641	0.254107	496227	rs17098406	14	32428667	A	G	0.0130176	-0.185951	0.11587	0.108533	498857	rs17098406	14	32428667	A	G	0.0130076	-0.311041	0.348286	0.371824	499333	rs17098406	14	32428667	A	G	0.0130151	0.109913	0.0508672	0.0307128	500348
YES	29	rs4389106	15	31677984	KLF13	C	T	0.092445	-0.571178585325	0.0583500044041	1.25735795043e-22	rs4389106	15	31677984	C	T	0.916979	-0.0129095	0.109852	0.906451	492134	rs4389106	15	31677984	C	T	0.916976	0.127623	0.108254	0.23843	496227	rs4389106	15	31677984	C	T	0.916992	0.0987776	0.0479097	0.039232	498857	rs4389106	15	31677984	C	T	0.916995	0.0740415	0.150538	0.622828	499333	rs4389106	15	31677984	C	T	0.916986	-0.0529941	0.0207387	0.0106089	500348
YES	30	rs11074971	16	11486668	CTD-3088G3.8	T	C	0.017893	-9.96421292736	0.411331191795	1.23382081453e-129	rs11074971	16	11486668	T	C	0.978352	0.502	0.208498	0.0160539	492134	rs11074971	16	11486668	T	C	0.978364	0.288527	0.208259	0.165922	496227	rs11074971	16	11486668	T	C	0.978352	0.136897	0.0891207	0.124518	498857	rs11074971	16	11486668	T	C	0.978374	0.484556	0.279856	0.083372	499333	rs11074971	16	11486668	T	C	0.978364	-0.0826215	0.0392515	0.035298	500348
YES	31	rs34891292	16	90081235	DBNDD1	A	G	0.0228628	-10.5114329751	0.505204149348	3.79469803714e-96	rs34891292	16	90081235	A	G	0.0536424	0.00259775	0.139476	0.98514	492134	rs34891292	16	90081235	A	G	0.0536647	0.405625	0.119308	0.000674311	496227	rs34891292	16	90081235	A	G	0.0536319	0.0988081	0.0609004	0.104706	498857	rs34891292	16	90081235	A	G	0.0536454	-0.0504978	0.194198	0.794838	499333	rs34891292	16	90081235	A	G	0.0536356	-0.0592478	0.0261863	0.0236636	500348
YES	32	rs76210604	17	65584101	PITPNC1	T	C	0.0218688	7.94121180188	0.205065004324	1e-200	rs76210604	17	65584101	T	C	0.0287015	-0.286132	0.181251	0.114417	492134	rs76210604	17	65584101	T	C	0.0287369	-0.250023	0.178422	0.161123	496227	rs76210604	17	65584101	T	C	0.0287393	-0.226666	0.0851466	0.00776605	498857	rs76210604	17	65584101	T	C	0.028735	0.13178	0.256015	0.606739	499333	rs76210604	17	65584101	T	C	0.0287415	0.084381	0.0343371	0.0139936	500348
YES	33	rs77511911	19	33149523	ANKRD27	A	G	0.0228628	10.2514201855	0.473491587781	5.98755207319e-104	rs77511911	19	33149523	A	G	0.0296286	-0.276249	0.178701	0.122136	492134	rs77511911	19	33149523	A	G	0.0296559	-0.00833997	0.175967	0.962198	496227	rs77511911	19	33149523	A	G	0.0296534	-0.0966156	0.0781122	0.216131	498857	rs77511911	19	33149523	A	G	0.029644	-0.564852	0.244768	0.021016	499333	rs77511911	19	33149523	A	G	0.0296597	0.0887452	0.0329162	0.00701585	500348
YES	34	rs148729815	19	49672829	TRPM4	T	C	0.0188867	-8.90364419817	0.275643157538	1e-200	rs148729815	19	49672829	T	C	0.0352241	0.105309	0.165019	0.52337	492134	rs148729815	19	49672829	T	C	0.0352398	0.134319	0.161646	0.406003	496227	rs148729815	19	49672829	T	C	0.0352406	0.135751	0.0714024	0.0572743	498857	rs148729815	19	49672829	T	C	0.0352321	0.479187	0.189041	0.0112499	499333	rs148729815	19	49672829	T	C	0.0352315	-0.0551268	0.0310464	0.0757949	500348
YES	35	rs1573474	21	45289700	AGPAT3	C	T	0.203777	0.170301231316	0.0183462754774	1.65384441058e-20	rs1573474	21	45289700	C	T	0.78813	0.0428768	0.0738292	0.561403	492134	rs1573474	21	45289700	C	T	0.787968	0.121055	0.0736831	0.100401	496227	rs1573474	21	45289700	C	T	0.787981	0.00780372	0.0322393	0.808737	498857	rs1573474	21	45289700	C	T	0.788036	0.199309	0.100539	0.0474351	499333	rs1573474	21	45289700	C	T	0.787999	-0.0367106	0.0139286	0.00839808	500348
YES	36	rs6005244	22	27334160	RP1-90L6.3	C	T	0.260437	0.0768123814037	0.0139952152487	4.05419883171e-08	rs6005244	22	27334160	C	T	0.728774	-0.0569939	0.0678926	0.401205	492134	rs6005244	22	27334160	C	T	0.728723	0.25449	0.0687077	0.000212266	496227	rs6005244	22	27334160	C	T	0.728691	-0.024392	0.0295855	0.409678	498857	rs6005244	22	27334160	C	T	0.728696	0.102328	0.0934088	0.273301	499333	rs6005244	22	27334160	C	T	0.728717	-0.00460358	0.012873	0.720631	500348