Aldehydic compounds – HMF, Furfural & Vanillin Enrichment analysis, differentially expressed genes, 25 clusters pvalueCutoff= 0.01 , pAdjustMethod= BH , qvalueCutoff= 0.01 ######################################################################################################################## Cluster number 1 Number of genes in cluster 1 is: 387 Genes in cluster 1 are: [1] "AO090001000009" "AO090001000029" "AO090001000061" "AO090001000090" "AO090001000149" "AO090001000193" [7] "AO090001000259" "AO090001000261" "AO090001000321" "AO090001000386" "AO090001000390" "AO090001000391" [13] "AO090001000437" "AO090001000511" "AO090001000604" "AO090001000684" "AO090001000693" "AO090001000729" [19] "AO090001000730" "AO090003000035" "AO090003000075" "AO090003000083" "AO090003000099" "AO090003000105" [25] "AO090003000115" "AO090003000116" "AO090003000135" "AO090003000136" "AO090003000150" "AO090003000217" [31] "AO090003000227" "AO090003000228" "AO090003000300" "AO090003000302" "AO090003000453" "AO090003000463" [37] "AO090003000489" "AO090003000542" "AO090003000564" "AO090003000826" "AO090003000836" "AO090003000852" [43] "AO090003000861" "AO090003000876" "AO090003000976" "AO090003001009" "AO090003001039" "AO090003001040" [49] "AO090003001113" "AO090003001129" "AO090003001130" "AO090003001147" "AO090003001152" "AO090003001188" [55] "AO090003001189" "AO090003001208" "AO090003001212" "AO090003001222" "AO090003001252" "AO090003001273" [61] "AO090003001292" "AO090003001301" "AO090003001386" "AO090003001388" "AO090003001428" "AO090003001429" [67] "AO090003001434" "AO090003001452" "AO090003001460" "AO090003001501" "AO090003001502" "AO090003001503" [73] "AO090003001538" "AO090003001539" "AO090003001542" "AO090003001543" "AO090005000025" "AO090005000026" [79] "AO090005000071" "AO090005000083" "AO090005000114" "AO090005000120" "AO090005000189" "AO090005000258" [85] "AO090005000307" "AO090005000325" "AO090005000374" "AO090005000459" "AO090005000486" "AO090005000573" [91] "AO090005000606" "AO090005000628" "AO090005000639" "AO090005000702" "AO090005000703" "AO090005000720" [97] "AO090005000784" "AO090005000817" "AO090005000871" "AO090005000916" "AO090005000945" "AO090005000957" [103] "AO090005000958" "AO090005001044" "AO090005001051" "AO090005001153" "AO090005001256" "AO090005001257" [109] "AO090005001316" "AO090005001344" "AO090005001345" "AO090005001380" "AO090005001453" "AO090005001479" [115] "AO090005001492" "AO090005001493" "AO090005001524" "AO090005001538" "AO090009000068" "AO090009000069" [121] "AO090009000071" "AO090009000104" "AO090009000140" "AO090009000145" "AO090009000160" "AO090009000161" [127] "AO090009000172" "AO090009000244" "AO090009000250" "AO090009000290" "AO090009000297" "AO090009000428" [133] "AO090009000429" "AO090009000441" "AO090009000453" "AO090009000471" "AO090009000478" "AO090009000500" [139] "AO090009000521" "AO090010000081" "AO090010000082" "AO090010000096" "AO090010000117" "AO090010000119" [145] "AO090010000138" "AO090010000145" "AO090010000177" "AO090010000178" "AO090010000196" "AO090010000265" [151] "AO090010000301" "AO090010000302" "AO090010000357" "AO090010000557" "AO090010000585" "AO090010000656" [157] "AO090010000664" "AO090010000683" "AO090010000770" "AO090011000032" "AO090011000039" "AO090011000040" [163] "AO090011000041" "AO090011000045" "AO090011000051" "AO090011000053" "AO090011000054" "AO090011000058" [169] "AO090011000067" "AO090011000092" "AO090011000096" "AO090011000097" "AO090011000131" "AO090011000163" [175] "AO090011000164" "AO090011000252" "AO090011000253" "AO090011000420" "AO090011000436" "AO090011000452" [181] "AO090011000454" "AO090011000462" "AO090011000602" "AO090011000611" "AO090011000612" "AO090011000640" [187] "AO090011000641" "AO090011000646" "AO090011000695" "AO090011000737" "AO090011000750" "AO090011000820" [193] "AO090011000839" "AO090011000871" "AO090011000900" "AO090012000050" "AO090012000054" "AO090012000070" [199] "AO090012000151" "AO090012000152" "AO090012000179" "AO090012000187" "AO090012000231" "AO090012000232" [205] "AO090012000233" "AO090012000234" "AO090012000329" "AO090012000330" "AO090012000332" "AO090012000343" [211] "AO090012000446" "AO090012000458" "AO090012000518" "AO090012000519" "AO090012000706" "AO090012000718" [217] "AO090012000809" "AO090012000882" "AO090012000960" "AO090020000030" "AO090020000061" "AO090020000072" [223] "AO090020000075" "AO090020000145" "AO090020000281" "AO090020000363" "AO090020000540" "AO090020000545" [229] "AO090020000558" "AO090020000563" "AO090020000684" "AO090020000685" "AO090023000067" "AO090023000088" [235] "AO090023000089" "AO090023000144" "AO090023000234" "AO090023000236" "AO090023000296" "AO090023000298" [241] "AO090023000300" "AO090023000337" "AO090023000370" "AO090023000387" "AO090023000403" "AO090023000465" [247] "AO090023000500" "AO090023000542" "AO090023000628" "AO090023000693" "AO090023000706" "AO090023000814" [253] "AO090023000848" "AO090023000862" "AO090023000920" "AO090023000942" "AO090023000945" "AO090023000962" [259] "AO090023000987" "AO090023001003" "AO090026000005" "AO090026000037" "AO090026000057" "AO090026000071" [265] "AO090026000078" "AO090026000095" "AO090026000098" "AO090026000114" "AO090026000126" "AO090026000194" [271] "AO090026000200" "AO090026000295" "AO090026000463" "AO090026000645" "AO090026000805" "AO090038000016" [277] "AO090038000026" "AO090038000191" "AO090038000260" "AO090038000297" "AO090038000354" "AO090038000370" [283] "AO090038000381" "AO090038000429" "AO090038000490" "AO090038000492" "AO090038000494" "AO090038000529" [289] "AO090038000577" "AO090102000027" "AO090102000033" "AO090102000069" "AO090102000104" "AO090102000111" [295] "AO090102000217" "AO090102000247" "AO090102000263" "AO090102000401" "AO090102000454" "AO090102000575" [301] "AO090102000581" "AO090102000600" "AO090103000018" "AO090103000021" "AO090103000047" "AO090103000084" [307] "AO090103000085" "AO090103000125" "AO090103000152" "AO090103000192" "AO090103000202" "AO090103000232" [313] "AO090103000234" "AO090103000235" "AO090103000243" "AO090103000290" "AO090103000306" "AO090103000307" [319] "AO090103000405" "AO090103000436" "AO090103000438" "AO090103000439" "AO090103000495" "AO090113000008" [325] "AO090113000097" "AO090113000177" "AO090113000182" "AO090113000183" "AO090120000020" "AO090120000026" [331] "AO090120000060" "AO090120000074" "AO090120000107" "AO090120000170" "AO090120000228" "AO090120000252" [337] "AO090120000425" "AO090120000432" "AO090120000440" "AO090124000050" "AO090124000051" "AO090124000052" [343] "AO090124000053" "AO090124000054" "AO090124000065" "AO090138000172" "AO090166000012" "AO090166000063" [349] "AO090166000081" "AO090166000100" "AO090166000101" "AO090166000123" "AO090206000064" "AO090206000068" [355] "AO090206000084" "AO090206000122" "AO090701000051" "AO090701000072" "AO090701000110" "AO090701000113" [361] "AO090701000116" "AO090701000180" "AO090701000181" "AO090701000196" "AO090701000286" "AO090701000367" [367] "AO090701000416" "AO090701000417" "AO090701000436" "AO090701000458" "AO090701000459" "AO090701000460" [373] "AO090701000467" "AO090701000484" "AO090701000505" "AO090701000526" "AO090701000527" "AO090701000541" [379] "AO090701000572" "AO090701000573" "AO090701000600" "AO090701000602" "AO090701000763" "AO090701000771" [385] "AO090701000772" "AO090701000791" "AO090701000904" -------------------------------------------------------------- No enriched GO terms. -------------------------------------------------------------- Number of enriched KEGG pathways: 1 KEGG pathways are: [1] "MAPK signaling pathway - yeast - Aspergillus oryzae" ######################################################################################################################## Cluster number 2 Number of genes in cluster 2 is: 278 Genes in cluster 2 are: [1] "AO090001000039" "AO090001000145" "AO090001000146" "AO090001000148" "AO090001000150" "AO090001000243" [7] "AO090001000403" "AO090001000414" "AO090001000462" "AO090001000526" "AO090001000527" "AO090001000564" [13] "AO090001000603" "AO090001000620" "AO090001000681" "AO090001000711" "AO090001000733" "AO090001000745" [19] "AO090003000038" "AO090003000039" "AO090003000071" "AO090003000082" "AO090003000133" "AO090003000404" [25] "AO090003000421" "AO090003000440" "AO090003000500" "AO090003000554" "AO090003000587" "AO090003000596" [31] "AO090003000672" "AO090003000678" "AO090003000789" "AO090003000790" "AO090003000829" "AO090003000883" [37] "AO090003000893" "AO090003000963" "AO090003000973" "AO090003001031" "AO090003001038" "AO090003001120" [43] "AO090003001225" "AO090003001227" "AO090003001283" "AO090003001302" "AO090003001343" "AO090003001537" [49] "AO090005000024" "AO090005000060" "AO090005000061" "AO090005000067" "AO090005000096" "AO090005000098" [55] "AO090005000105" "AO090005000106" "AO090005000164" "AO090005000231" "AO090005000298" "AO090005000327" [61] "AO090005000330" "AO090005000377" "AO090005000471" "AO090005000509" "AO090005000574" "AO090005000620" [67] "AO090005000725" "AO090005000797" "AO090005000821" "AO090005000968" "AO090005001052" "AO090005001105" [73] "AO090005001136" "AO090005001327" "AO090005001332" "AO090005001364" "AO090005001425" "AO090005001491" [79] "AO090005001543" "AO090005001583" "AO090005001628" "AO090005001642" "AO090005001645" "AO090009000043" [85] "AO090009000060" "AO090009000078" "AO090009000171" "AO090009000181" "AO090009000189" "AO090009000190" [91] "AO090009000270" "AO090009000282" "AO090009000312" "AO090009000381" "AO090009000457" "AO090009000513" [97] "AO090010000010" "AO090010000086" "AO090010000212" "AO090010000216" "AO090010000369" "AO090010000393" [103] "AO090010000399" "AO090010000465" "AO090010000501" "AO090010000586" "AO090010000737" "AO090010000741" [109] "AO090010000744" "AO090010000763" "AO090011000011" "AO090011000046" "AO090011000112" "AO090011000114" [115] "AO090011000197" "AO090011000319" "AO090011000427" "AO090011000428" "AO090011000430" "AO090011000453" [121] "AO090011000458" "AO090011000547" "AO090011000681" "AO090011000776" "AO090011000854" "AO090011000911" [127] "AO090012000183" "AO090012000191" "AO090012000196" "AO090012000263" "AO090012000370" "AO090012000437" [133] "AO090012000482" "AO090012000513" "AO090012000534" "AO090012000577" "AO090012000590" "AO090012000591" [139] "AO090012000637" "AO090012000646" "AO090012000665" "AO090012000667" "AO090012000703" "AO090012000713" [145] "AO090012000840" "AO090012000866" "AO090012000878" "AO090012000916" "AO090012000994" "AO090012001021" [151] "AO090020000071" "AO090020000188" "AO090020000213" "AO090020000214" "AO090020000291" "AO090020000334" [157] "AO090020000357" "AO090020000416" "AO090020000435" "AO090020000450" "AO090020000471" "AO090020000508" [163] "AO090020000522" "AO090020000593" "AO090020000627" "AO090020000698" "AO090020000714" "AO090020t00006" [169] "AO090023000109" "AO090023000110" "AO090023000124" "AO090023000176" "AO090023000177" "AO090023000263" [175] "AO090023000278" "AO090023000316" "AO090023000380" "AO090023000386" "AO090023000392" "AO090023000494" [181] "AO090023000608" "AO090023000698" "AO090023000735" "AO090023000793" "AO090023000967" "AO090026000069" [187] "AO090026000070" "AO090026000100" "AO090026000160" "AO090026000281" "AO090026000355" "AO090026000368" [193] "AO090026000451" "AO090026000475" "AO090026000553" "AO090026000652" "AO090026000699" "AO090026000704" [199] "AO090026000726" "AO090026000831" "AO090026000840" "AO090038000112" "AO090038000153" "AO090038000204" [205] "AO090038000205" "AO090038000214" "AO090038000232" "AO090038000242" "AO090038000243" "AO090038000280" [211] "AO090038000418" "AO090038000420" "AO090038000517" "AO090038000561" "AO090038000576" "AO090038000602" [217] "AO090102000013" "AO090102000022" "AO090102000044" "AO090102000106" "AO090102000136" "AO090102000274" [223] "AO090102000275" "AO090102000293" "AO090102000310" "AO090102000494" "AO090102000511" "AO090102000564" [229] "AO090103000048" "AO090103000083" "AO090103000091" "AO090103000123" "AO090103000308" "AO090103000309" [235] "AO090103000347" "AO090113000051" "AO090113000146" "AO090120000025" "AO090120000027" "AO090120000058" [241] "AO090120000081" "AO090120000152" "AO090120000178" "AO090120000204" "AO090120000219" "AO090120000221" [247] "AO090120000331" "AO090120000356" "AO090120000429" "AO090120000454" "AO090120000460" "AO090124000008" [253] "AO090124000040" "AO090124000074" "AO090138000075" "AO090138000133" "AO090206000028" "AO090206000079" [259] "AO090206000085" "AO090206000109" "AO090308000008" "AO090701000077" "AO090701000121" "AO090701000126" [265] "AO090701000182" "AO090701000185" "AO090701000197" "AO090701000198" "AO090701000356" "AO090701000434" [271] "AO090701000536" "AO090701000537" "AO090701000538" "AO090701000589" "AO090701000590" "AO090701000642" [277] "AO090701000677" "AO090701000731" -------------------------------------------------------------- Number of enriched GO terms: 24 GO terms are: [1] "cytoskeleton" "cell division" [3] "microtubule motor activity" "microtubule-based process" [5] "microtubule binding" "microtubule-based movement" [7] "cytoskeletal motor activity" "tubulin binding" [9] "signal transduction" "signaling" [11] "mitotic cell cycle" "cell communication" [13] "cell cycle" "nuclear chromosome segregation" [15] "cell cycle process" "chromosome segregation" [17] "actomyosin structure organization" "actomyosin contractile ring organization" [19] "mitotic sister chromatid segregation" "mitotic cytokinesis" [21] "cortical cytoskeleton organization" "cortical actin cytoskeleton organization" [23] "chromosome localization" "establishment of chromosome localization" Parent terms retrieved using org.Sc.sgd.db (S. cerevisiae) Biological process parent terms of GO terms are: term parentTerm GO:0051301 "cell division" "cell division" GO:0007017 "microtubule-based process" "microtubule-based process" GO:0007018 "microtubule-based movement" "microtubule-based process" GO:0023052 "signaling" "signaling" GO:0007165 "signal transduction" "signaling" GO:0000278 "mitotic cell cycle" "mitotic cell cycle" GO:0007154 "cell communication" "cell communication" GO:0007049 "cell cycle" "mitotic cell cycle" GO:0022402 "cell cycle process" "mitotic cell cycle" GO:0098813 "nuclear chromosome segregation" "mitotic cell cycle" GO:0007059 "chromosome segregation" "mitotic cell cycle" GO:0031032 "actomyosin structure organization" "actomyosin structure organization" GO:0000070 "mitotic sister chromatid segregation" "mitotic cell cycle" GO:0044837 "actomyosin contractile ring organization" "actomyosin structure organization" GO:0000281 "mitotic cytokinesis" "cell division" GO:0030865 "cortical cytoskeleton organization" "actomyosin structure organization" GO:0030866 "cortical actin cytoskeleton organization" "actomyosin structure organization" GO:0051303 "establishment of chromosome localization" "establishment of chromosome localization" GO:0050000 "chromosome localization" "establishment of chromosome localization" Number of Biological process parent terms: actomyosin structure organization cell communication 4 1 cell division establishment of chromosome localization 2 2 microtubule-based process mitotic cell cycle 2 6 signaling 2 Molecular function parent terms of GO terms are: term parentTerm GO:0003777 "microtubule motor activity" "microtubule motor activity" GO:0008017 "microtubule binding" "microtubule binding" GO:0003774 "cytoskeletal motor activity" "microtubule motor activity" GO:0015631 "tubulin binding" "microtubule binding" Number of Molecular function parent terms: microtubule binding microtubule motor activity 2 2 No Cellular component parent terms found. Number of GO terms for which NO parent term was found: 1 No parent term was found for the following GO terms: [1] "cytoskeleton" -------------------------------------------------------------- Number of enriched KEGG pathways: 2 KEGG pathways are: [1] "Cell cycle - yeast - Aspergillus oryzae" "Meiosis - yeast - Aspergillus oryzae" ######################################################################################################################## Cluster number 3 Number of genes in cluster 3 is: 291 Genes in cluster 3 are: [1] "AO090001000125" "AO090001000204" "AO090001000213" "AO090001000215" "AO090001000241" "AO090001000260" [7] "AO090001000513" "AO090001000669" "AO090001000671" "AO090001000706" "AO090001000732" "AO090001000747" [13] "AO090003000041" "AO090003000057" "AO090003000069" "AO090003000076" "AO090003000100" "AO090003000118" [19] "AO090003000231" "AO090003000232" "AO090003000299" "AO090003000356" "AO090003000436" "AO090003000469" [25] "AO090003000523" "AO090003000568" "AO090003000569" "AO090003000844" "AO090003000853" "AO090003000856" [31] "AO090003000857" "AO090003000870" "AO090003000958" "AO090003001025" "AO090003001059" "AO090003001060" [37] "AO090003001148" "AO090003001173" "AO090003001336" "AO090003001337" "AO090003001375" "AO090003001401" [43] "AO090003001419" "AO090003001430" "AO090003001436" "AO090003001548" "AO090005000057" "AO090005000093" [49] "AO090005000116" "AO090005000130" "AO090005000131" "AO090005000170" "AO090005000197" "AO090005000368" [55] "AO090005000376" "AO090005000413" "AO090005000417" "AO090005000464" "AO090005000611" "AO090005000612" [61] "AO090005000688" "AO090005000744" "AO090005000745" "AO090005000773" "AO090005000783" "AO090005000849" [67] "AO090005000850" "AO090005000852" "AO090005000860" "AO090005000955" "AO090005001151" "AO090005001152" [73] "AO090005001216" "AO090005001250" "AO090005001261" "AO090005001262" "AO090005001269" "AO090005001278" [79] "AO090005001343" "AO090005001360" "AO090005001363" "AO090005001472" "AO090005001475" "AO090005001599" [85] "AO090009000106" "AO090009000126" "AO090009000208" "AO090009000209" "AO090009000230" "AO090009000258" [91] "AO090009000262" "AO090009000328" "AO090009000369" "AO090009000464" "AO090009000555" "AO090009000646" [97] "AO090009000660" "AO090010000184" "AO090010000199" "AO090010000204" "AO090010000431" "AO090010000439" [103] "AO090010000490" "AO090010000527" "AO090010000612" "AO090010000644" "AO090010000645" "AO090010000647" [109] "AO090010000706" "AO090011000008" "AO090011000068" "AO090011000069" "AO090011000079" "AO090011000223" [115] "AO090011000233" "AO090011000235" "AO090011000238" "AO090011000333" "AO090011000359" "AO090011000446" [121] "AO090011000455" "AO090011000493" "AO090011000521" "AO090011000553" "AO090011000555" "AO090011000559" [127] "AO090011000622" "AO090011000792" "AO090011000793" "AO090011000851" "AO090011000918" "AO090011000922" [133] "AO090011000927" "AO090011000937" "AO090012000026" "AO090012000030" "AO090012000031" "AO090012000113" [139] "AO090012000114" "AO090012000149" "AO090012000198" "AO090012000489" "AO090012000504" "AO090012000507" [145] "AO090012000532" "AO090012000598" "AO090012000671" "AO090012000680" "AO090012000692" "AO090012000719" [151] "AO090012000727" "AO090012000758" "AO090012000789" "AO090012000847" "AO090012000853" "AO090012000864" [157] "AO090012000947" "AO090012000985" "AO090020000014" "AO090020000066" "AO090020000096" "AO090020000105" [163] "AO090020000111" "AO090020000157" "AO090020000161" "AO090020000162" "AO090020000280" "AO090020000317" [169] "AO090020000333" "AO090020000354" "AO090020000430" "AO090020000533" "AO090020000579" "AO090020000657" [175] "AO090020000682" "AO090020000703" "AO090023000063" "AO090023000180" "AO090023000242" "AO090023000293" [181] "AO090023000383" "AO090023000384" "AO090023000461" "AO090023000499" "AO090023000506" "AO090023000669" [187] "AO090023000670" "AO090023000691" "AO090023000708" "AO090023000709" "AO090023000729" "AO090023000811" [193] "AO090023000827" "AO090023000828" "AO090023000829" "AO090023000852" "AO090023000990" "AO090026000158" [199] "AO090026000181" "AO090026000315" "AO090026000318" "AO090026000432" "AO090026000547" "AO090026000592" [205] "AO090026000665" "AO090026000687" "AO090026000716" "AO090026000768" "AO090026000827" "AO090026000834" [211] "AO090038000096" "AO090038000106" "AO090038000206" "AO090038000255" "AO090038000292" "AO090038000348" [217] "AO090038000355" "AO090038000608" "AO090102000021" "AO090102000024" "AO090102000025" "AO090102000026" [223] "AO090102000039" "AO090102000078" "AO090102000146" "AO090102000213" "AO090102000355" "AO090102000366" [229] "AO090102000528" "AO090102000545" "AO090102000559" "AO090102000640" "AO090102000650" "AO090103000029" [235] "AO090103000044" "AO090103000090" "AO090103000093" "AO090103000096" "AO090103000201" "AO090103000230" [241] "AO090103000311" "AO090113000007" "AO090113000049" "AO090113000060" "AO090113000088" "AO090113000122" [247] "AO090113000181" "AO090120000001" "AO090120000096" "AO090120000128" "AO090120000201" "AO090120000272" [253] "AO090120000288" "AO090120000298" "AO090120000299" "AO090120000482" "AO090120000483" "AO090124000001" [259] "AO090124000032" "AO090124000033" "AO090124000043" "AO090124000066" "AO090124000088" "AO090138000039" [265] "AO090138000063" "AO090138000077" "AO090138000161" "AO090138000204" "AO090166000071" "AO090166000109" [271] "AO090206000004" "AO090206000049" "AO090701000010" "AO090701000120" "AO090701000188" "AO090701000220" [277] "AO090701000303" "AO090701000337" "AO090701000391" "AO090701000456" "AO090701000500" "AO090701000534" [283] "AO090701000535" "AO090701000539" "AO090701000601" "AO090701000624" "AO090701000789" "AO090701000798" [289] "AO090701000833" "AO090701000839" "AO090701000840" -------------------------------------------------------------- Number of enriched GO terms: 88 GO terms are: [1] "DNA metabolic process" [2] "DNA replication" [3] "DNA-templated DNA replication" [4] "catalytic activity, acting on DNA" [5] "DNA repair" [6] "DNA damage response" [7] "cell cycle" [8] "double-stranded DNA binding" [9] "cellular response to stress" [10] "chromosome" [11] "replication fork" [12] "DNA replication initiation" [13] "DNA replication origin binding" [14] "response to stress" [15] "ATP-dependent activity, acting on DNA" [16] "nuclear replication fork" [17] "cell cycle process" [18] "double-strand break repair via break-induced replication" [19] "replication fork protection complex" [20] "nuclear DNA replication" [21] "cell cycle DNA replication" [22] "regulation of DNA-templated DNA replication" [23] "DNA helicase activity" [24] "regulation of DNA replication" [25] "regulation of DNA-templated DNA replication initiation" [26] "cellular response to stimulus" [27] "mitotic cell cycle" [28] "mitotic cell cycle process" [29] "DNA geometric change" [30] "DNA duplex unwinding" [31] "double-strand break repair via homologous recombination" [32] "DNA conformation change" [33] "regulation of DNA metabolic process" [34] "ATP hydrolysis activity" [35] "DNA recombination" [36] "mitotic DNA replication" [37] "recombinational repair" [38] "nuclear chromosome" [39] "ATP-dependent activity" [40] "chromosome organization" [41] "DNA strand elongation involved in DNA replication" [42] "DNA strand elongation" [43] "chromatin binding" [44] "single-stranded DNA binding" [45] "pyrophosphatase activity" [46] "hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides" [47] "sequence-specific double-stranded DNA binding" [48] "EC:3.6.1.15" [49] "ribonucleoside triphosphate phosphatase activity" [50] "hydrolase activity, acting on acid anhydrides" [51] "double-strand break repair" [52] "endoplasmic reticulum" [53] "sequence-specific DNA binding" [54] "chromosomal region" [55] "endomembrane system" [56] "endoplasmic reticulum membrane" [57] "nuclear outer membrane-endoplasmic reticulum membrane network" [58] "endoplasmic reticulum subcompartment" [59] "helicase activity" [60] "chromosome, telomeric region" [61] "catalytic activity, acting on a nucleic acid" [62] "reproduction" [63] "protein-DNA complex" [64] "organelle subcompartment" [65] "reproductive process" [66] "organelle organization" [67] "nucleoplasm" [68] "GO:0000790" [69] "meiotic cell cycle process" [70] "negative regulation of cellular process" [71] "negative regulation of biological process" [72] "mismatch repair" [73] "meiotic cell cycle" [74] "protein-DNA complex organization" [75] "glycoprotein metabolic process" [76] "membrane lipid biosynthetic process" [77] "protein-DNA complex assembly" [78] "DNA damage sensor activity" [79] "ATP-dependent DNA damage sensor activity" [80] "membrane lipid metabolic process" [81] "microtubule associated complex" [82] "negative regulation of chromosome organization" [83] "chromatin remodeling" [84] "spindle organization" [85] "negative regulation of organelle organization" [86] "constitutive heterochromatin formation" [87] "microtubule cytoskeleton" [88] "meiosis I cell cycle process" Parent terms retrieved using org.Sc.sgd.db (S. cerevisiae) Biological process parent terms of GO terms are: term parentTerm GO:0006259 "DNA metabolic process" "DNA metabolic process" GO:0006260 "DNA replication" "DNA metabolic process" GO:0006261 "DNA-templated DNA replication" "DNA metabolic process" GO:0006281 "DNA repair" "DNA repair" GO:0006974 "DNA damage response" "DNA repair" GO:0007049 "cell cycle" "cell cycle" GO:0033554 "cellular response to stress" "DNA repair" GO:0006270 "DNA replication initiation" "DNA metabolic process" GO:0006950 "response to stress" "DNA repair" GO:0022402 "cell cycle process" "cell cycle" GO:0000727 "double-strand break repair via break-induced replication" "DNA metabolic process" GO:0044786 "cell cycle DNA replication" "DNA metabolic process" GO:0033260 "nuclear DNA replication" "DNA metabolic process" GO:0090329 "regulation of DNA-templated DNA replication" "DNA metabolic process" GO:0006275 "regulation of DNA replication" "DNA metabolic process" GO:0030174 "regulation of DNA-templated DNA replication initiation" "DNA metabolic process" GO:0051716 "cellular response to stimulus" "DNA repair" GO:0000278 "mitotic cell cycle" "cell cycle" GO:1903047 "mitotic cell cycle process" "cell cycle" GO:0032508 "DNA duplex unwinding" "DNA duplex unwinding" GO:0032392 "DNA geometric change" "DNA duplex unwinding" GO:0000724 "double-strand break repair via homologous recombination" "DNA metabolic process" GO:0071103 "DNA conformation change" "DNA duplex unwinding" GO:0051052 "regulation of DNA metabolic process" "DNA metabolic process" GO:1902969 "mitotic DNA replication" "DNA metabolic process" GO:0006310 "DNA recombination" "DNA metabolic process" GO:0000725 "recombinational repair" "DNA metabolic process" GO:0051276 "chromosome organization" "DNA duplex unwinding" GO:0022616 "DNA strand elongation" "DNA metabolic process" GO:0006271 "DNA strand elongation involved in DNA replication" "DNA metabolic process" GO:0006302 "double-strand break repair" "DNA metabolic process" GO:0000003 "reproduction" "reproduction" GO:0022414 "reproductive process" "reproduction" GO:0006996 "organelle organization" "DNA duplex unwinding" GO:1903046 "meiotic cell cycle process" "reproduction" GO:0048523 "negative regulation of cellular process" "negative regulation of cellular process" GO:0048519 "negative regulation of biological process" "negative regulation of cellular process" GO:0006298 "mismatch repair" "DNA metabolic process" GO:0051321 "meiotic cell cycle" "reproduction" GO:0071824 "protein-DNA complex organization" "protein-DNA complex organization" GO:0009100 "glycoprotein metabolic process" "glycoprotein metabolic process" GO:0046467 "membrane lipid biosynthetic process" "membrane lipid biosynthetic process" GO:0065004 "protein-DNA complex assembly" "protein-DNA complex organization" GO:0006643 "membrane lipid metabolic process" "membrane lipid biosynthetic process" GO:2001251 "negative regulation of chromosome organization" "negative regulation of cellular process" GO:0006338 "chromatin remodeling" "protein-DNA complex organization" GO:0007051 "spindle organization" "cell cycle" GO:0010639 "negative regulation of organelle organization" "negative regulation of cellular process" GO:0061982 "meiosis I cell cycle process" "reproduction" Number of Biological process parent terms: cell cycle DNA duplex unwinding 5 5 DNA metabolic process DNA repair 19 5 glycoprotein metabolic process membrane lipid biosynthetic process 1 2 negative regulation of cellular process protein-DNA complex organization 4 3 reproduction 5 Molecular function parent terms of GO terms are: term GO:0140097 "catalytic activity, acting on DNA" GO:0003690 "double-stranded DNA binding" GO:0003688 "DNA replication origin binding" GO:0008094 "ATP-dependent activity, acting on DNA" GO:0003678 "DNA helicase activity" GO:0016887 "ATP hydrolysis activity" GO:0003682 "chromatin binding" GO:0003697 "single-stranded DNA binding" GO:0016462 "pyrophosphatase activity" GO:1990837 "sequence-specific double-stranded DNA binding" GO:0017111 "ribonucleoside triphosphate phosphatase activity" GO:0016818 "hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides" GO:0016817 "hydrolase activity, acting on acid anhydrides" GO:0043565 "sequence-specific DNA binding" GO:0004386 "helicase activity" parentTerm GO:0140097 "catalytic activity, acting on DNA" GO:0003690 "double-stranded DNA binding" GO:0003688 "double-stranded DNA binding" GO:0008094 "catalytic activity, acting on DNA" GO:0003678 "catalytic activity, acting on DNA" GO:0016887 "ATP hydrolysis activity" GO:0003682 "chromatin binding" GO:0003697 "double-stranded DNA binding" GO:0016462 "ATP hydrolysis activity" GO:1990837 "double-stranded DNA binding" GO:0017111 "ATP hydrolysis activity" GO:0016818 "ATP hydrolysis activity" GO:0016817 "ATP hydrolysis activity" GO:0043565 "double-stranded DNA binding" GO:0004386 "helicase activity" Number of Molecular function parent terms: ATP hydrolysis activity catalytic activity, acting on DNA chromatin binding 5 3 1 double-stranded DNA binding helicase activity 5 1 Cellular component parent terms of GO terms are: term GO:0005694 "chromosome" GO:0005657 "replication fork" GO:0043596 "nuclear replication fork" GO:0031298 "replication fork protection complex" GO:0000228 "nuclear chromosome" GO:0005783 "endoplasmic reticulum" GO:0098687 "chromosomal region" GO:0012505 "endomembrane system" GO:0005789 "endoplasmic reticulum membrane" GO:0098827 "endoplasmic reticulum subcompartment" GO:0042175 "nuclear outer membrane-endoplasmic reticulum membrane network" GO:0000781 "chromosome, telomeric region" GO:0032993 "protein-DNA complex" GO:0031984 "organelle subcompartment" GO:0005654 "nucleoplasm" GO:0005875 "microtubule associated complex" GO:0015630 "microtubule cytoskeleton" parentTerm GO:0005694 "chromosome" GO:0005657 "chromosome" GO:0043596 "chromosome" GO:0031298 "chromosome" GO:0000228 "chromosome" GO:0005783 "endoplasmic reticulum" GO:0098687 "chromosome" GO:0012505 "endoplasmic reticulum" GO:0005789 "endoplasmic reticulum" GO:0098827 "endoplasmic reticulum subcompartment" GO:0042175 "endoplasmic reticulum" GO:0000781 "chromosome" GO:0032993 "protein-DNA complex" GO:0031984 "endoplasmic reticulum subcompartment" GO:0005654 "nucleoplasm" GO:0005875 "microtubule associated complex" GO:0015630 "microtubule associated complex" Number of Cellular component parent terms: chromosome endoplasmic reticulum endoplasmic reticulum subcompartment 7 4 2 microtubule associated complex nucleoplasm protein-DNA complex 2 1 1 Number of GO terms for which NO parent term was found: 7 No parent term was found for the following GO terms: [1] "ATP-dependent activity" "EC:3.6.1.15" [3] "catalytic activity, acting on a nucleic acid" "GO:0000790" [5] "DNA damage sensor activity" "ATP-dependent DNA damage sensor activity" [7] "constitutive heterochromatin formation" -------------------------------------------------------------- Number of enriched KEGG pathways: 6 KEGG pathways are: [1] "Cell cycle - yeast - Aspergillus oryzae" "DNA replication - Aspergillus oryzae" [3] "Mismatch repair - Aspergillus oryzae" "Meiosis - yeast - Aspergillus oryzae" [5] "Fanconi anemia pathway - Aspergillus oryzae" "N-Glycan biosynthesis - Aspergillus oryzae" ######################################################################################################################## Cluster number 4 Number of genes in cluster 4 is: 168 Genes in cluster 4 are: [1] "AO090001000051" "AO090001000130" "AO090001000131" "AO090001000163" "AO090001000229" "AO090001000258" [7] "AO090001000495" "AO090001000546" "AO090003000062" "AO090003000064" "AO090003000065" "AO090003000094" [13] "AO090003000419" "AO090003000492" "AO090003000507" "AO090003000687" "AO090003000808" "AO090003001053" [19] "AO090003001437" "AO090003001438" "AO090003001482" "AO090005000223" "AO090005000226" "AO090005000437" [25] "AO090005000440" "AO090005000513" "AO090005000560" "AO090005000561" "AO090005000615" "AO090005000760" [31] "AO090005000908" "AO090005000963" "AO090005001023" "AO090005001114" "AO090005001126" "AO090005001222" [37] "AO090005001238" "AO090005001279" "AO090009000066" "AO090009000067" "AO090009000146" "AO090009000162" [43] "AO090009000313" "AO090009000325" "AO090009000400" "AO090010000040" "AO090010000139" "AO090010000152" [49] "AO090010000154" "AO090010000186" "AO090010000222" "AO090010000341" "AO090010000342" "AO090010000380" [55] "AO090010000528" "AO090010000615" "AO090010000616" "AO090010000654" "AO090010000768" "AO090011000007" [61] "AO090011000010" "AO090011000081" "AO090011000187" "AO090011000212" "AO090011000330" "AO090011000331" [67] "AO090011000332" "AO090011000460" "AO090011000473" "AO090011000515" "AO090011000874" "AO090011000926" [73] "AO090012000022" "AO090012000141" "AO090012000251" "AO090012000372" "AO090012000673" "AO090012000674" [79] "AO090012000696" "AO090012000838" "AO090012000842" "AO090020000010" "AO090020000364" "AO090020000444" [85] "AO090020000511" "AO090020000512" "AO090020000638" "AO090020000695" "AO090023000092" "AO090023000334" [91] "AO090023000382" "AO090023000401" "AO090023000503" "AO090023000529" "AO090023000530" "AO090023000659" [97] "AO090023000690" "AO090023000739" "AO090023000816" "AO090023000986" "AO090026000083" "AO090026000103" [103] "AO090026000120" "AO090026000124" "AO090026000143" "AO090026000144" "AO090026000147" "AO090026000337" [109] "AO090026000361" "AO090026000526" "AO090038000146" "AO090038000244" "AO090038000319" "AO090038000485" [115] "AO090038000486" "AO090038000498" "AO090038000499" "AO090038000500" "AO090038000505" "AO090038000613" [121] "AO090102000037" "AO090102000229" "AO090102000262" "AO090102000265" "AO090102000434" "AO090102000523" [127] "AO090103000013" "AO090103000069" "AO090103000161" "AO090103000166" "AO090103000167" "AO090103000168" [133] "AO090103000169" "AO090103000200" "AO090103000212" "AO090103000463" "AO090113000169" "AO090120000077" [139] "AO090120000172" "AO090120000214" "AO090120000352" "AO090120000430" "AO090124000036" "AO090124000044" [145] "AO090138000079" "AO090138000082" "AO090166000019" "AO090166000091" "AO090701000049" "AO090701000076" [151] "AO090701000104" "AO090701000194" "AO090701000291" "AO090701000293" "AO090701000294" "AO090701000295" [157] "AO090701000327" "AO090701000329" "AO090701000342" "AO090701000457" "AO090701000487" "AO090701000511" [163] "AO090701000578" "AO090701000579" "AO090701000739" "AO090701000748" "AO090701000797" "AO090701000837" -------------------------------------------------------------- Number of enriched GO terms: 29 GO terms are: [1] "endoplasmic reticulum membrane" [2] "nuclear outer membrane-endoplasmic reticulum membrane network" [3] "endoplasmic reticulum subcompartment" [4] "endoplasmic reticulum" [5] "organelle subcompartment" [6] "endomembrane system" [7] "coated vesicle" [8] "COPII-coated ER to Golgi transport vesicle" [9] "protein processing" [10] "endoplasmic reticulum to Golgi vesicle-mediated transport" [11] "Golgi membrane" [12] "transport vesicle" [13] "Golgi vesicle transport" [14] "coated vesicle membrane" [15] "transport vesicle membrane" [16] "vesicle coat" [17] "protein maturation" [18] "endoplasmic reticulum protein-containing complex" [19] "cytoplasmic vesicle" [20] "vesicle" [21] "intracellular vesicle" [22] "Golgi apparatus" [23] "membrane protein complex" [24] "membrane coat" [25] "coated membrane" [26] "protein glycosylation" [27] "glycoprotein biosynthetic process" [28] "macromolecule glycosylation" [29] "nitrogen compound transport" Parent terms retrieved using org.Sc.sgd.db (S. cerevisiae) Biological process parent terms of GO terms are: term GO:0016485 "protein processing" GO:0006888 "endoplasmic reticulum to Golgi vesicle-mediated transport" GO:0048193 "Golgi vesicle transport" GO:0051604 "protein maturation" GO:0009101 "glycoprotein biosynthetic process" GO:0071705 "nitrogen compound transport" GO:0043413 "macromolecule glycosylation" GO:0006486 "protein glycosylation" parentTerm GO:0016485 "protein processing" GO:0006888 "endoplasmic reticulum to Golgi vesicle-mediated transport" GO:0048193 "endoplasmic reticulum to Golgi vesicle-mediated transport" GO:0051604 "protein processing" GO:0009101 "protein processing" GO:0071705 "endoplasmic reticulum to Golgi vesicle-mediated transport" GO:0043413 "macromolecule glycosylation" GO:0006486 "macromolecule glycosylation" Number of Biological process parent terms: endoplasmic reticulum to Golgi vesicle-mediated transport 3 macromolecule glycosylation 2 protein processing 3 No Molecular function parent terms found. Cellular component parent terms of GO terms are: term GO:0098827 "endoplasmic reticulum subcompartment" GO:0042175 "nuclear outer membrane-endoplasmic reticulum membrane network" GO:0005789 "endoplasmic reticulum membrane" GO:0005783 "endoplasmic reticulum" GO:0031984 "organelle subcompartment" GO:0012505 "endomembrane system" GO:0030135 "coated vesicle" GO:0030134 "COPII-coated ER to Golgi transport vesicle" GO:0000139 "Golgi membrane" GO:0030133 "transport vesicle" GO:0030662 "coated vesicle membrane" GO:0030658 "transport vesicle membrane" GO:0030120 "vesicle coat" GO:0140534 "endoplasmic reticulum protein-containing complex" GO:0031982 "vesicle" GO:0097708 "intracellular vesicle" GO:0031410 "cytoplasmic vesicle" GO:0005794 "Golgi apparatus" GO:0098796 "membrane protein complex" GO:0048475 "coated membrane" GO:0030117 "membrane coat" parentTerm GO:0098827 "endoplasmic reticulum subcompartment" GO:0042175 "nuclear outer membrane-endoplasmic reticulum membrane network" GO:0005789 "nuclear outer membrane-endoplasmic reticulum membrane network" GO:0005783 "nuclear outer membrane-endoplasmic reticulum membrane network" GO:0031984 "endoplasmic reticulum subcompartment" GO:0012505 "nuclear outer membrane-endoplasmic reticulum membrane network" GO:0030135 "coated vesicle" GO:0030134 "coated vesicle" GO:0000139 "nuclear outer membrane-endoplasmic reticulum membrane network" GO:0030133 "coated vesicle" GO:0030662 "coated vesicle" GO:0030658 "coated vesicle" GO:0030120 "vesicle coat" GO:0140534 "nuclear outer membrane-endoplasmic reticulum membrane network" GO:0031982 "coated vesicle" GO:0097708 "coated vesicle" GO:0031410 "coated vesicle" GO:0005794 "nuclear outer membrane-endoplasmic reticulum membrane network" GO:0098796 "membrane protein complex" GO:0048475 "vesicle coat" GO:0030117 "vesicle coat" Number of Cellular component parent terms: coated vesicle 8 endoplasmic reticulum subcompartment 2 membrane protein complex 1 nuclear outer membrane-endoplasmic reticulum membrane network 7 vesicle coat 3 Number of GO terms for which NO parent term was found: 0 -------------------------------------------------------------- Number of enriched KEGG pathways: 2 KEGG pathways are: [1] "Protein processing in endoplasmic reticulum - Aspergillus oryzae" [2] "N-Glycan biosynthesis - Aspergillus oryzae" ######################################################################################################################## Cluster number 5 Number of genes in cluster 5 is: 172 Genes in cluster 5 are: [1] "AO090001000111" "AO090001000184" "AO090001000219" "AO090001000423" "AO090003000152" "AO090003000377" [7] "AO090003000441" "AO090003000495" "AO090003000577" "AO090003000847" "AO090003000874" "AO090003001032" [13] "AO090003001127" "AO090003001355" "AO090003001365" "AO090003001392" "AO090003001409" "AO090003001435" [19] "AO090005000035" "AO090005000037" "AO090005000038" "AO090005000078" "AO090005000094" "AO090005000103" [25] "AO090005000123" "AO090005000147" "AO090005000308" "AO090005000349" "AO090005000391" "AO090005000392" [31] "AO090005000430" "AO090005000498" "AO090005000680" "AO090005000681" "AO090005000685" "AO090005000686" [37] "AO090005000876" "AO090005000930" "AO090005000931" "AO090005001320" "AO090005001325" "AO090005001348" [43] "AO090005001419" "AO090009000046" "AO090009000090" "AO090009000092" "AO090009000507" "AO090009000529" [49] "AO090009000530" "AO090009000581" "AO090009000593" "AO090010000026" "AO090010000090" "AO090010000340" [55] "AO090010000381" "AO090010000382" "AO090010000390" "AO090010000427" "AO090010000483" "AO090010000534" [61] "AO090010000537" "AO090010000591" "AO090010000670" "AO090010000702" "AO090011000076" "AO090011000244" [67] "AO090011000302" "AO090011000306" "AO090011000382" "AO090011000383" "AO090011000459" "AO090011000529" [73] "AO090011000581" "AO090011000614" "AO090012000016" "AO090012000017" "AO090012000080" "AO090012000111" [79] "AO090012000119" "AO090012000122" "AO090012000130" "AO090012000337" "AO090012000349" "AO090012000608" [85] "AO090012000700" "AO090012000921" "AO090020000176" "AO090020000177" "AO090020000179" "AO090020000269" [91] "AO090020000288" "AO090020000296" "AO090020000386" "AO090020000387" "AO090020000399" "AO090020000624" [97] "AO090020000694" "AO090023000050" "AO090023000083" "AO090023000196" "AO090023000264" "AO090023000302" [103] "AO090023000457" "AO090023000645" "AO090023000671" "AO090023000754" "AO090023000847" "AO090023000900" [109] "AO090026000224" "AO090026000258" "AO090026000292" "AO090026000367" "AO090026000479" "AO090026000544" [115] "AO090026000626" "AO090026000714" "AO090026000725" "AO090026000741" "AO090026000749" "AO090026000756" [121] "AO090026000761" "AO090038000046" "AO090038000052" "AO090038000057" "AO090038000135" "AO090038000140" [127] "AO090038000158" "AO090038000159" "AO090038000174" "AO090038000241" "AO090038000330" "AO090038000419" [133] "AO090038000434" "AO090102000064" "AO090102000176" "AO090102000209" "AO090102000246" "AO090102000347" [139] "AO090102000413" "AO090102000540" "AO090103000118" "AO090103000199" "AO090113000064" "AO090120000045" [145] "AO090120000084" "AO090120000187" "AO090120000455" "AO090120000456" "AO090120000457" "AO090120000474" [151] "AO090138000041" "AO090138000071" "AO090138000072" "AO090166000064" "AO090166000074" "AO090206000080" [157] "AO090206000105" "AO090701000071" "AO090701000114" "AO090701000206" "AO090701000307" "AO090701000360" [163] "AO090701000398" "AO090701000399" "AO090701000408" "AO090701000423" "AO090701000582" "AO090701000598" [169] "AO090701000770" "AO090701000794" "AO090701000890" "AO090701000891" -------------------------------------------------------------- No enriched GO terms. -------------------------------------------------------------- Number of enriched KEGG pathways: 4 KEGG pathways are: [1] "Arginine and proline metabolism - Aspergillus oryzae" [2] "Phenylalanine metabolism - Aspergillus oryzae" [3] "Glycine, serine and threonine metabolism - Aspergillus oryzae" [4] "beta-Alanine metabolism - Aspergillus oryzae" ######################################################################################################################## Cluster number 6 Number of genes in cluster 6 is: 274 Genes in cluster 6 are: [1] "AO090001000011" "AO090001000102" "AO090001000234" "AO090001000284" "AO090001000325" "AO090001000348" [7] "AO090001000359" "AO090001000365" "AO090001000387" "AO090001000393" "AO090001000438" "AO090001000463" [13] "AO090001000549" "AO090001000550" "AO090001000555" "AO090003000022" "AO090003000024" "AO090003000079" [19] "AO090003000093" "AO090003000159" "AO090003000164" "AO090003000174" "AO090003000191" "AO090003000208" [25] "AO090003000209" "AO090003000210" "AO090003000211" "AO090003000213" "AO090003000214" "AO090003000247" [31] "AO090003000273" "AO090003000323" "AO090003000325" "AO090003000327" "AO090003000429" "AO090003000430" [37] "AO090003000459" "AO090003000476" "AO090003000593" "AO090003000614" "AO090003000643" "AO090003000677" [43] "AO090003000730" "AO090003000935" "AO090003000990" "AO090003001099" "AO090003001137" "AO090003001138" [49] "AO090003001224" "AO090003001233" "AO090003001270" "AO090003001272" "AO090003001277" "AO090003001295" [55] "AO090003001319" "AO090003001340" "AO090003001410" "AO090003001514" "AO090005000126" "AO090005000221" [61] "AO090005000241" "AO090005000295" "AO090005000333" "AO090005000343" "AO090005000357" "AO090005000483" [67] "AO090005000527" "AO090005000577" "AO090005000578" "AO090005000709" "AO090005000798" "AO090005000829" [73] "AO090005001089" "AO090005001181" "AO090005001242" "AO090005001248" "AO090005001384" "AO090005001469" [79] "AO090005001470" "AO090005001552" "AO090009000017" "AO090009000022" "AO090009000073" "AO090009000129" [85] "AO090009000141" "AO090009000173" "AO090009000216" "AO090009000236" "AO090009000298" "AO090009000476" [91] "AO090009000517" "AO090009000528" "AO090009000584" "AO090009000592" "AO090009000596" "AO090009000628" [97] "AO090010000164" "AO090010000165" "AO090010000210" "AO090010000297" "AO090010000330" "AO090010000383" [103] "AO090010000435" "AO090010000500" "AO090010000566" "AO090010000599" "AO090010000635" "AO090010000640" [109] "AO090010000719" "AO090010000727" "AO090011000035" "AO090011000101" "AO090011000107" "AO090011000155" [115] "AO090011000156" "AO090011000179" "AO090011000243" "AO090011000257" "AO090011000258" "AO090011000262" [121] "AO090011000300" "AO090011000326" "AO090011000536" "AO090011000537" "AO090011000540" "AO090011000650" [127] "AO090011000690" "AO090011000712" "AO090011000765" "AO090011000766" "AO090011000878" "AO090011000884" [133] "AO090011000885" "AO090011000915" "AO090012000091" "AO090012000112" "AO090012000143" "AO090012000150" [139] "AO090012000154" "AO090012000161" "AO090012000217" "AO090012000279" "AO090012000304" "AO090012000378" [145] "AO090012000445" "AO090012000579" "AO090012000601" "AO090012000659" "AO090012000660" "AO090012000683" [151] "AO090012000708" "AO090012000715" "AO090012000766" "AO090012000771" "AO090012000787" "AO090012000821" [157] "AO090012000828" "AO090012000901" "AO090020000036" "AO090020000042" "AO090020000190" "AO090020000207" [163] "AO090020000219" "AO090020000293" "AO090020000301" "AO090020000332" "AO090020000348" "AO090020000380" [169] "AO090020000457" "AO090020000459" "AO090020000461" "AO090020000483" "AO090020000499" "AO090020000509" [175] "AO090020000590" "AO090020000659" "AO090023000036" "AO090023000037" "AO090023000142" "AO090023000172" [181] "AO090023000181" "AO090023000204" "AO090023000262" "AO090023000391" "AO090023000473" "AO090023000488" [187] "AO090023000491" "AO090023000561" "AO090023000688" "AO090023000697" "AO090023000711" "AO090023000761" [193] "AO090026000014" "AO090026000082" "AO090026000091" "AO090026000104" "AO090026000157" "AO090026000195" [199] "AO090026000214" "AO090026000245" "AO090026000249" "AO090026000278" "AO090026000303" "AO090026000307" [205] "AO090026000481" "AO090026000523" "AO090026000639" "AO090026000675" "AO090026000773" "AO090026000777" [211] "AO090026000799" "AO090038000145" "AO090038000328" "AO090038000345" "AO090038000346" "AO090038000388" [217] "AO090038000389" "AO090038000390" "AO090038000445" "AO090038000519" "AO090038000578" "AO090038000598" [223] "AO090038000599" "AO090102000016" "AO090102000058" "AO090102000139" "AO090102000268" "AO090102000282" [229] "AO090102000297" "AO090102000361" "AO090102000406" "AO090102000419" "AO090102000584" "AO090103000020" [235] "AO090103000022" "AO090103000228" "AO090103000343" "AO090103000388" "AO090103000451" "AO090103000486" [241] "AO090113000067" "AO090113000133" "AO090113000136" "AO090113000139" "AO090113000144" "AO090120000069" [247] "AO090120000127" "AO090120000311" "AO090120000317" "AO090120000334" "AO090120000416" "AO090120000418" [253] "AO090120000448" "AO090120000476" "AO090124000071" "AO090138000049" "AO090138000125" "AO090166000050" [259] "AO090166000094" "AO090206000078" "AO090206000119" "AO090701000015" "AO090701000153" "AO090701000154" [265] "AO090701000184" "AO090701000233" "AO090701000400" "AO090701000471" "AO090701000483" "AO090701000658" [271] "AO090701000662" "AO090701000716" "AO090701000777" "AO090701000779" -------------------------------------------------------------- Number of enriched GO terms: 15 GO terms are: [1] "oxidoreductase activity, acting on single donors with incorporation of molecular oxygen" [2] "amino acid catabolic process" [3] "alpha-amino acid catabolic process" [4] "oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen" [5] "organic acid catabolic process" [6] "carboxylic acid catabolic process" [7] "dioxygenase activity" [8] "proteinogenic amino acid catabolic process" [9] "L-amino acid catabolic process" [10] "aromatic amino acid family catabolic process" [11] "small molecule catabolic process" [12] "L-phenylalanine catabolic process" [13] "erythrose 4-phosphate/phosphoenolpyruvate family amino acid catabolic process" [14] "L-phenylalanine metabolic process" [15] "erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process" Parent terms retrieved using org.Sc.sgd.db (S. cerevisiae) Biological process parent terms of GO terms are: term GO:0009063 "amino acid catabolic process" GO:1901606 "alpha-amino acid catabolic process" GO:0016054 "organic acid catabolic process" GO:0046395 "carboxylic acid catabolic process" GO:0009074 "aromatic amino acid family catabolic process" GO:0044282 "small molecule catabolic process" GO:1902222 "erythrose 4-phosphate/phosphoenolpyruvate family amino acid catabolic process" GO:0006559 "L-phenylalanine catabolic process" GO:1902221 "erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process" GO:0006558 "L-phenylalanine metabolic process" parentTerm GO:0009063 "amino acid catabolic process" GO:1901606 "amino acid catabolic process" GO:0016054 "amino acid catabolic process" GO:0046395 "amino acid catabolic process" GO:0009074 "amino acid catabolic process" GO:0044282 "amino acid catabolic process" GO:1902222 "amino acid catabolic process" GO:0006559 "amino acid catabolic process" GO:1902221 "amino acid catabolic process" GO:0006558 "amino acid catabolic process" Number of Biological process parent terms: amino acid catabolic process 10 Molecular function parent terms of GO terms are: term GO:0016701 "oxidoreductase activity, acting on single donors with incorporation of molecular oxygen" GO:0016702 "oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen" GO:0051213 "dioxygenase activity" parentTerm GO:0016701 "oxidoreductase activity, acting on single donors with incorporation of molecular oxygen" GO:0016702 "oxidoreductase activity, acting on single donors with incorporation of molecular oxygen" GO:0051213 "oxidoreductase activity, acting on single donors with incorporation of molecular oxygen" Number of Molecular function parent terms: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen 3 No Cellular component parent terms found. Number of GO terms for which NO parent term was found: 2 No parent term was found for the following GO terms: [1] "proteinogenic amino acid catabolic process" "L-amino acid catabolic process" -------------------------------------------------------------- Number of enriched KEGG pathways: 2 KEGG pathways are: [1] "Valine, leucine and isoleucine degradation - Aspergillus oryzae" [2] "Fatty acid degradation - Aspergillus oryzae" ######################################################################################################################## Cluster number 7 Number of genes in cluster 7 is: 279 Genes in cluster 7 are: [1] "AO090001000097" "AO090001000176" "AO090001000220" "AO090001000277" "AO090001000451" "AO090001000452" [7] "AO090001000483" "AO090001000670" "AO090001000696" "AO090001000702" "AO090001000744" "AO090003000031" [13] "AO090003000073" "AO090003000130" "AO090003000218" "AO090003000237" "AO090003000344" "AO090003000382" [19] "AO090003000408" "AO090003000445" "AO090003000448" "AO090003000511" "AO090003000515" "AO090003000573" [25] "AO090003000674" "AO090003000712" "AO090003000757" "AO090003000764" "AO090003000869" "AO090003000961" [31] "AO090003000971" "AO090003001003" "AO090003001014" "AO090003001021" "AO090003001121" "AO090003001122" [37] "AO090003001154" "AO090003001291" "AO090003001297" "AO090003001349" "AO090003001425" "AO090005000146" [43] "AO090005000176" "AO090005000232" "AO090005000358" "AO090005000472" "AO090005000474" "AO090005000477" [49] "AO090005000613" "AO090005000708" "AO090005000733" "AO090005000765" "AO090005000775" "AO090005000882" [55] "AO090005000884" "AO090005000961" "AO090005001036" "AO090005001085" "AO090005001268" "AO090005001401" [61] "AO090005001494" "AO090005001545" "AO090005001555" "AO090005001575" "AO090005001589" "AO090005001626" [67] "AO090005001651" "AO090009000020" "AO090009000021" "AO090009000023" "AO090009000114" "AO090009000183" [73] "AO090009000197" "AO090009000315" "AO090009000321" "AO090009000335" "AO090009000354" "AO090009000359" [79] "AO090009000374" "AO090009000384" "AO090009000389" "AO090009000390" "AO090009000398" "AO090009000479" [85] "AO090009000524" "AO090009000608" "AO090009000612" "AO090010000014" "AO090010000029" "AO090010000105" [91] "AO090010000122" "AO090010000217" "AO090010000250" "AO090010000284" "AO090010000291" "AO090010000308" [97] "AO090010000338" "AO090010000366" "AO090010000403" "AO090010000514" "AO090010000515" "AO090010000602" [103] "AO090010000749" "AO090011000021" "AO090011000142" "AO090011000346" "AO090011000369" "AO090011000423" [109] "AO090011000467" "AO090011000470" "AO090011000498" "AO090011000631" "AO090011000689" "AO090011000757" [115] "AO090011000864" "AO090011000865" "AO090011000866" "AO090011000956" "AO090012000006" "AO090012000010" [121] "AO090012000144" "AO090012000145" "AO090012000165" "AO090012000167" "AO090012000185" "AO090012000244" [127] "AO090012000253" "AO090012000264" "AO090012000265" "AO090012000401" "AO090012000431" "AO090012000476" [133] "AO090012000607" "AO090012000669" "AO090012000716" "AO090012000732" "AO090012000753" "AO090012000772" [139] "AO090012000820" "AO090012000867" "AO090012000908" "AO090012001003" "AO090012001019" "AO090020000050" [145] "AO090020000068" "AO090020000086" "AO090020000115" "AO090020000261" "AO090020000310" "AO090020000340" [151] "AO090020000470" "AO090020000472" "AO090020000473" "AO090020000585" "AO090020000597" "AO090020000691" [157] "AO090023000039" "AO090023000044" "AO090023000074" "AO090023000081" "AO090023000117" "AO090023000164" [163] "AO090023000165" "AO090023000216" "AO090023000218" "AO090023000249" "AO090023000255" "AO090023000367" [169] "AO090023000524" "AO090023000525" "AO090023000605" "AO090023000655" "AO090023000677" "AO090023000707" [175] "AO090023000715" "AO090023000842" "AO090023000907" "AO090023000934" "AO090023000985" "AO090026000015" [181] "AO090026000031" "AO090026000110" "AO090026000202" "AO090026000236" "AO090026000250" "AO090026000266" [187] "AO090026000280" "AO090026000317" "AO090026000326" "AO090026000425" "AO090026000440" "AO090026000516" [193] "AO090026000627" "AO090026000629" "AO090026000721" "AO090026000748" "AO090026000837" "AO090038000138" [199] "AO090038000139" "AO090038000432" "AO090038000444" "AO090038000526" "AO090038000611" "AO090038000619" [205] "AO090102000002" "AO090102000028" "AO090102000042" "AO090102000061" "AO090102000164" "AO090102000192" [211] "AO090102000244" "AO090102000352" "AO090102000405" "AO090102000431" "AO090102000445" "AO090102000486" [217] "AO090102000506" "AO090102000544" "AO090102000591" "AO090102000642" "AO090103000119" "AO090103000137" [223] "AO090103000158" "AO090103000179" "AO090103000204" "AO090103000332" "AO090103000365" "AO090103000378" [229] "AO090103000490" "AO090113000090" "AO090113000106" "AO090113000130" "AO090120000044" "AO090120000103" [235] "AO090120000153" "AO090120000162" "AO090120000164" "AO090120000165" "AO090120000179" "AO090120000211" [241] "AO090120000315" "AO090120000408" "AO090120000417" "AO090120000426" "AO090124000004" "AO090124000048" [247] "AO090124000086" "AO090138000045" "AO090138000046" "AO090138000140" "AO090138000141" "AO090138000184" [253] "AO090166000015" "AO090166000045" "AO090206000091" "AO090206000092" "AO090206000103" "AO090206000113" [259] "AO090672000001" "AO090701000036" "AO090701000038" "AO090701000050" "AO090701000061" "AO090701000062" [265] "AO090701000109" "AO090701000223" "AO090701000283" "AO090701000312" "AO090701000339" "AO090701000340" [271] "AO090701000372" "AO090701000381" "AO090701000476" "AO090701000695" "AO090701000696" "AO090701000698" [277] "AO090701000744" "AO090701000780" "AO090701000867" -------------------------------------------------------------- No enriched GO terms. -------------------------------------------------------------- No enriched KEGG pathways. ######################################################################################################################## Cluster number 8 Number of genes in cluster 8 is: 322 Genes in cluster 8 are: [1] "AO090001000177" "AO090001000178" "AO090001000195" "AO090001000203" "AO090001000255" "AO090001000307" [7] "AO090001000344" "AO090001000374" "AO090001000441" "AO090001000493" "AO090001000512" "AO090001000545" [13] "AO090001000587" "AO090001000592" "AO090001000593" "AO090001000613" "AO090001000627" "AO090001000641" [19] "AO090001000692" "AO090003000042" "AO090003000168" "AO090003000201" "AO090003000249" "AO090003000250" [25] "AO090003000264" "AO090003000265" "AO090003000318" "AO090003000324" "AO090003000331" "AO090003000350" [31] "AO090003000417" "AO090003000482" "AO090003000483" "AO090003000576" "AO090003000613" "AO090003000648" [37] "AO090003000654" "AO090003000660" "AO090003000673" "AO090003000681" "AO090003000742" "AO090003000810" [43] "AO090003000822" "AO090003000840" "AO090003000849" "AO090003000898" "AO090003000907" "AO090003000922" [49] "AO090003001013" "AO090003001049" "AO090003001128" "AO090003001170" "AO090003001177" "AO090003001186" [55] "AO090003001200" "AO090003001204" "AO090003001298" "AO090003001320" "AO090003001469" "AO090003001519" [61] "AO090003001552" "AO090005000004" "AO090005000016" "AO090005000036" "AO090005000076" "AO090005000264" [67] "AO090005000356" "AO090005000482" "AO090005000521" "AO090005000524" "AO090005000551" "AO090005000592" [73] "AO090005000596" "AO090005000623" "AO090005000629" "AO090005000641" "AO090005000652" "AO090005000653" [79] "AO090005000752" "AO090005000753" "AO090005000778" "AO090005000796" "AO090005000868" "AO090005000872" [85] "AO090005000897" "AO090005000918" "AO090005001100" "AO090005001118" "AO090005001182" "AO090005001244" [91] "AO090005001247" "AO090005001249" "AO090005001274" "AO090005001284" "AO090005001383" "AO090005001429" [97] "AO090005001529" "AO090005001531" "AO090005001547" "AO090009000050" "AO090009000102" "AO090009000130" [103] "AO090009000210" "AO090009000219" "AO090009000231" "AO090009000248" "AO090009000293" "AO090009000299" [109] "AO090009000337" "AO090009000360" "AO090009000394" "AO090009000397" "AO090009000407" "AO090009000487" [115] "AO090009000520" "AO090009000548" "AO090009000562" "AO090009000570" "AO090009000582" "AO090009000626" [121] "AO090009000637" "AO090009000709" "AO090010000028" "AO090010000048" "AO090010000064" "AO090010000074" [127] "AO090010000085" "AO090010000140" "AO090010000339" "AO090010000365" "AO090010000414" "AO090010000450" [133] "AO090010000454" "AO090010000477" "AO090010000516" "AO090010000517" "AO090010000552" "AO090010000652" [139] "AO090010000689" "AO090010000722" "AO090010000728" "AO090011000094" "AO090011000180" "AO090011000229" [145] "AO090011000266" "AO090011000431" "AO090011000503" "AO090011000586" "AO090011000687" "AO090011000794" [151] "AO090011000805" "AO090011000827" "AO090011000837" "AO090011000892" "AO090011000948" "AO090012000007" [157] "AO090012000046" "AO090012000049" "AO090012000101" "AO090012000105" "AO090012000240" "AO090012000245" [163] "AO090012000246" "AO090012000254" "AO090012000255" "AO090012000317" "AO090012000318" "AO090012000319" [169] "AO090012000352" "AO090012000395" "AO090012000457" "AO090012000463" "AO090012000537" "AO090012000546" [175] "AO090012000557" "AO090012000578" "AO090012000587" "AO090012000644" "AO090012000682" "AO090012000816" [181] "AO090012000919" "AO090012000975" "AO090012000997" "AO090012001008" "AO090012001017" "AO090012001026" [187] "AO090012001027" "AO090020000056" "AO090020000125" "AO090020000191" "AO090020000200" "AO090020000239" [193] "AO090020000258" "AO090020000259" "AO090020000388" "AO090020000412" "AO090020000423" "AO090020000434" [199] "AO090020000458" "AO090020000517" "AO090020000537" "AO090020000554" "AO090020000562" "AO090020000692" [205] "AO090020000693" "AO090023000011" "AO090023000016" "AO090023000035" "AO090023000038" "AO090023000040" [211] "AO090023000168" "AO090023000250" "AO090023000351" "AO090023000481" "AO090023000495" "AO090023000501" [217] "AO090023000622" "AO090023000625" "AO090023000633" "AO090023000647" "AO090023000654" "AO090023000656" [223] "AO090023000687" "AO090023000782" "AO090023000864" "AO090023000866" "AO090023000883" "AO090023000908" [229] "AO090023000948" "AO090026000046" "AO090026000179" "AO090026000184" "AO090026000185" "AO090026000190" [235] "AO090026000230" "AO090026000246" "AO090026000276" "AO090026000293" "AO090026000357" "AO090026000392" [241] "AO090026000417" "AO090026000480" "AO090026000501" "AO090026000593" "AO090026000633" "AO090026000634" [247] "AO090026000660" "AO090026000695" "AO090026000697" "AO090026000728" "AO090026000791" "AO090026000803" [253] "AO090026000845" "AO090038000075" "AO090038000088" "AO090038000091" "AO090038000104" "AO090038000286" [259] "AO090038000302" "AO090038000362" "AO090038000396" "AO090038000539" "AO090038000541" "AO090038000542" [265] "AO090038000557" "AO090038000582" "AO090102000003" "AO090102000133" "AO090102000166" "AO090102000169" [271] "AO090102000243" "AO090102000308" "AO090102000479" "AO090102000482" "AO090102000538" "AO090102000539" [277] "AO090102000621" "AO090102000622" "AO090102000633" "AO090102000637" "AO090103000023" "AO090103000108" [283] "AO090103000150" "AO090103000219" "AO090103000221" "AO090103000355" "AO090103000413" "AO090103000415" [289] "AO090103000487" "AO090113000002" "AO090113000134" "AO090120000017" "AO090120000068" "AO090120000305" [295] "AO090120000324" "AO090120000396" "AO090138000076" "AO090138000119" "AO090138000168" "AO090138000180" [301] "AO090138000188" "AO090166000049" "AO090166000085" "AO090206000024" "AO090206000053" "AO090206r00001" [307] "AO090206r00003" "AO090701000157" "AO090701000350" "AO090701000402" "AO090701000478" "AO090701000493" [313] "AO090701000504" "AO090701000644" "AO090701000660" "AO090701000734" "AO090701000736" "AO090701000826" [319] "AO090701000830" "AO090701000831" "AO090701000841" "AO090701000859" -------------------------------------------------------------- No enriched GO terms. -------------------------------------------------------------- Number of enriched KEGG pathways: 2 KEGG pathways are: [1] "Peroxisome - Aspergillus oryzae" "Autophagy - other - Aspergillus oryzae" ######################################################################################################################## Cluster number 9 Number of genes in cluster 9 is: 203 Genes in cluster 9 are: [1] "AO090001000071" "AO090001000075" "AO090001000083" "AO090001000089" "AO090001000113" "AO090001000507" [7] "AO090001000508" "AO090001000565" "AO090001000567" "AO090001000611" "AO090001000700" "AO090001000741" [13] "AO090001000742" "AO090003000098" "AO090003000113" "AO090003000138" "AO090003000139" "AO090003000346" [19] "AO090003000388" "AO090003000443" "AO090003000696" "AO090003000758" "AO090003000832" "AO090003000942" [25] "AO090003001080" "AO090003001211" "AO090003001387" "AO090003001443" "AO090003001448" "AO090003001536" [31] "AO090003001541" "AO090005000064" "AO090005000139" "AO090005000280" "AO090005000282" "AO090005000284" [37] "AO090005000562" "AO090005000579" "AO090005000601" "AO090005000602" "AO090005000734" "AO090005000803" [43] "AO090005000939" "AO090005000940" "AO090005000964" "AO090005000965" "AO090005001081" "AO090005001102" [49] "AO090005001197" "AO090005001318" "AO090005001347" "AO090005001483" "AO090005001484" "AO090005001489" [55] "AO090005001528" "AO090005001554" "AO090005001622" "AO090009000024" "AO090009000100" "AO090009000122" [61] "AO090009000144" "AO090009000178" "AO090009000357" "AO090009000382" "AO090009000446" "AO090009000515" [67] "AO090009000545" "AO090010000018" "AO090010000019" "AO090010000065" "AO090010000069" "AO090010000136" [73] "AO090010000179" "AO090010000348" "AO090010000374" "AO090010000418" "AO090010000526" "AO090010000641" [79] "AO090010000666" "AO090010000684" "AO090010000712" "AO090010000729" "AO090010000743" "AO090011000065" [85] "AO090011000099" "AO090011000100" "AO090011000139" "AO090011000153" "AO090011000448" "AO090011000451" [91] "AO090011000461" "AO090011000483" "AO090011000565" "AO090011000692" "AO090011000743" "AO090011000758" [97] "AO090011000873" "AO090011000895" "AO090011000929" "AO090012000117" "AO090012000125" "AO090012000292" [103] "AO090012000293" "AO090012000449" "AO090012000536" "AO090012000572" "AO090012000699" "AO090012000725" [109] "AO090012000737" "AO090012000738" "AO090012000739" "AO090012000762" "AO090012000835" "AO090012000899" [115] "AO090020000076" "AO090020000141" "AO090020000195" "AO090020000212" "AO090020000392" "AO090020000393" [121] "AO090020000503" "AO090020000527" "AO090020000561" "AO090020000565" "AO090020000646" "AO090023000056" [127] "AO090023000224" "AO090023000340" "AO090023000385" "AO090023000388" "AO090023000414" "AO090023000474" [133] "AO090023000480" "AO090023000482" "AO090023000576" "AO090023000577" "AO090023000590" "AO090023000634" [139] "AO090023000650" "AO090023000786" "AO090023000935" "AO090026000003" "AO090026000034" "AO090026000109" [145] "AO090026000159" "AO090026000188" "AO090026000465" "AO090026000696" "AO090026000765" "AO090026000775" [151] "AO090026000797" "AO090038000089" "AO090038000132" "AO090038000167" "AO090038000195" "AO090038000221" [157] "AO090038000245" "AO090038000258" "AO090038000322" "AO090038000323" "AO090038000481" "AO090038000574" [163] "AO090038000595" "AO090102000168" "AO090102000478" "AO090102000489" "AO090103000094" "AO090103000122" [169] "AO090103000246" "AO090103000274" "AO090103000437" "AO090103000445" "AO090103000446" "AO090103000459" [175] "AO090103000494" "AO090113000055" "AO090113000063" "AO090113000156" "AO090113000158" "AO090120000052" [181] "AO090120000076" "AO090120000135" "AO090120000155" "AO090120000244" "AO090120000376" "AO090120000444" [187] "AO090120000451" "AO090124000056" "AO090138000096" "AO090166000030" "AO090166000038" "AO090206000052" [193] "AO090206000074" "AO090206000075" "AO090701000019" "AO090701000317" "AO090701000389" "AO090701000396" [199] "AO090701000442" "AO090701000444" "AO090701000465" "AO090701000525" "AO090701000546" -------------------------------------------------------------- No enriched GO terms. -------------------------------------------------------------- No enriched KEGG pathways. ######################################################################################################################## Cluster number 10 Number of genes in cluster 10 is: 373 Genes in cluster 10 are: [1] "AO090001000021" "AO090001000121" "AO090001000155" "AO090001000183" "AO090001000187" "AO090001000209" [7] "AO090001000253" "AO090001000339" "AO090001000340" "AO090001000360" "AO090001000444" "AO090001000449" [13] "AO090001000472" "AO090001000473" "AO090001000515" "AO090001000556" "AO090001000557" "AO090001000558" [19] "AO090001000612" "AO090001000714" "AO090001000734" "AO090003000153" "AO090003000360" "AO090003000416" [25] "AO090003000420" "AO090003000464" "AO090003000471" "AO090003000472" "AO090003000473" "AO090003000529" [31] "AO090003000530" "AO090003000535" "AO090003000563" "AO090003000612" "AO090003000626" "AO090003000638" [37] "AO090003000659" "AO090003000713" "AO090003000772" "AO090003000775" "AO090003000792" "AO090003000793" [43] "AO090003000845" "AO090003000910" "AO090003000929" "AO090003000977" "AO090003001067" "AO090003001167" [49] "AO090003001328" "AO090003001341" "AO090003001342" "AO090003001368" "AO090003001491" "AO090003001527" [55] "AO090005000029" "AO090005000044" "AO090005000054" "AO090005000055" "AO090005000097" "AO090005000102" [61] "AO090005000118" "AO090005000144" "AO090005000149" "AO090005000174" "AO090005000183" "AO090005000194" [67] "AO090005000195" "AO090005000235" "AO090005000237" "AO090005000317" "AO090005000318" "AO090005000427" [73] "AO090005000506" "AO090005000559" "AO090005000595" "AO090005000609" "AO090005000624" "AO090005000656" [79] "AO090005000657" "AO090005000661" "AO090005000700" "AO090005000707" "AO090005000805" "AO090005000895" [85] "AO090005000905" "AO090005000906" "AO090005000917" "AO090005000933" "AO090005001046" "AO090005001069" [91] "AO090005001073" "AO090005001096" "AO090005001119" "AO090005001141" "AO090005001288" "AO090005001295" [97] "AO090005001454" "AO090005001495" "AO090005001521" "AO090005001525" "AO090005001526" "AO090005001581" [103] "AO090005001618" "AO090009000039" "AO090009000040" "AO090009000042" "AO090009000054" "AO090009000132" [109] "AO090009000237" "AO090009000276" "AO090009000330" "AO090009000411" "AO090009000414" "AO090009000433" [115] "AO090009000443" "AO090009000486" "AO090009000527" "AO090009000703" "AO090010000108" "AO090010000131" [121] "AO090010000144" "AO090010000205" "AO090010000304" "AO090010000305" "AO090010000306" "AO090010000315" [127] "AO090010000324" "AO090010000327" "AO090010000355" "AO090010000367" "AO090010000375" "AO090010000404" [133] "AO090010000406" "AO090010000618" "AO090010000628" "AO090010000759" "AO090010000762" "AO090011000016" [139] "AO090011000017" "AO090011000031" "AO090011000043" "AO090011000077" "AO090011000082" "AO090011000111" [145] "AO090011000160" "AO090011000227" "AO090011000288" "AO090011000303" "AO090011000325" "AO090011000339" [151] "AO090011000391" "AO090011000463" "AO090011000464" "AO090011000474" "AO090011000481" "AO090011000482" [157] "AO090011000609" "AO090011000726" "AO090011000730" "AO090011000801" "AO090011000807" "AO090011000814" [163] "AO090011000815" "AO090011000867" "AO090011000883" "AO090011000889" "AO090011000909" "AO090011000910" [169] "AO090011000928" "AO090011000947" "AO090012000013" "AO090012000025" "AO090012000045" "AO090012000158" [175] "AO090012000262" "AO090012000275" "AO090012000307" "AO090012000375" "AO090012000429" "AO090012000439" [181] "AO090012000442" "AO090012000478" "AO090012000560" "AO090012000561" "AO090012000562" "AO090012000563" [187] "AO090012000614" "AO090012000774" "AO090012000786" "AO090012000885" "AO090012000886" "AO090020000033" [193] "AO090020000049" "AO090020000185" "AO090020000217" "AO090020000326" "AO090020000361" "AO090020000366" [199] "AO090020000374" "AO090020000526" "AO090020000531" "AO090020000556" "AO090020000572" "AO090020000660" [205] "AO090020000670" "AO090023000076" "AO090023000135" "AO090023000163" "AO090023000185" "AO090023000305" [211] "AO090023000350" "AO090023000416" "AO090023000420" "AO090023000428" "AO090023000448" "AO090023000455" [217] "AO090023000458" "AO090023000508" "AO090023000643" "AO090023000686" "AO090023000716" "AO090023000743" [223] "AO090023000746" "AO090023000759" "AO090023000792" "AO090023000879" "AO090023000881" "AO090023000884" [229] "AO090023000922" "AO090023000963" "AO090023000980" "AO090023000988" "AO090026000013" "AO090026000033" [235] "AO090026000039" "AO090026000067" "AO090026000105" "AO090026000243" "AO090026000244" "AO090026000279" [241] "AO090026000288" "AO090026000320" "AO090026000395" "AO090026000400" "AO090026000443" "AO090026000657" [247] "AO090026000671" "AO090026000680" "AO090026000808" "AO090026000819" "AO090026000823" "AO090038000027" [253] "AO090038000073" "AO090038000079" "AO090038000080" "AO090038000175" "AO090038000183" "AO090038000188" [259] "AO090038000189" "AO090038000415" "AO090038000457" "AO090038000540" "AO090038000575" "AO090038000584" [265] "AO090038000593" "AO090038000612" "AO090038000631" "AO090102000020" "AO090102000087" "AO090102000122" [271] "AO090102000198" "AO090102000238" "AO090102000264" "AO090102000402" "AO090102000480" "AO090102000484" [277] "AO090102000563" "AO090102000569" "AO090103000027" "AO090103000073" "AO090103000092" "AO090103000097" [283] "AO090103000134" "AO090103000156" "AO090103000157" "AO090103000209" "AO090103000264" "AO090103000294" [289] "AO090103000312" "AO090103000325" "AO090103000326" "AO090103000345" "AO090103000372" "AO090103000376" [295] "AO090103000392" "AO090103000398" "AO090103000400" "AO090103000401" "AO090103000406" "AO090103000414" [301] "AO090103000422" "AO090103000423" "AO090103000491" "AO090113000107" "AO090113000108" "AO090113000188" [307] "AO090120000010" "AO090120000011" "AO090120000012" "AO090120000013" "AO090120000014" "AO090120000039" [313] "AO090120000043" "AO090120000065" "AO090120000067" "AO090120000160" "AO090120000161" "AO090120000185" [319] "AO090120000189" "AO090120000229" "AO090120000237" "AO090120000267" "AO090120000328" "AO090120000400" [325] "AO090120000401" "AO090120000459" "AO090120000463" "AO090124000002" "AO090124000064" "AO090124000072" [331] "AO090138000028" "AO090138000040" "AO090138000104" "AO090138000107" "AO090138000109" "AO090138000116" [337] "AO090138000122" "AO090138000135" "AO090138000169" "AO090138000179" "AO090166000092" "AO090206000045" [343] "AO090206000101" "AO090206000123" "AO090672000003" "AO090701000056" "AO090701000204" "AO090701000229" [349] "AO090701000244" "AO090701000248" "AO090701000280" "AO090701000379" "AO090701000440" "AO090701000454" [355] "AO090701000455" "AO090701000472" "AO090701000473" "AO090701000555" "AO090701000575" "AO090701000594" [361] "AO090701000626" "AO090701000634" "AO090701000665" "AO090701000673" "AO090701000776" "AO090701000805" [367] "AO090701000806" "AO090701000809" "AO090701000810" "AO090701000817" "AO090701000892" "AO090701000900" [373] "AO090701000902" -------------------------------------------------------------- Number of enriched GO terms: 5 GO terms are: [1] "DNA-binding transcription factor activity, RNA polymerase II-specific" [2] "regulation of transcription by RNA polymerase II" [3] "DNA-binding transcription factor activity" [4] "transcription regulator activity" [5] "transcription by RNA polymerase II" Parent terms retrieved using org.Sc.sgd.db (S. cerevisiae) Biological process parent terms of GO terms are: term GO:0006357 "regulation of transcription by RNA polymerase II" GO:0006366 "transcription by RNA polymerase II" parentTerm GO:0006357 "regulation of transcription by RNA polymerase II" GO:0006366 "regulation of transcription by RNA polymerase II" Number of Biological process parent terms: regulation of transcription by RNA polymerase II 2 Molecular function parent terms of GO terms are: term GO:0000981 "DNA-binding transcription factor activity, RNA polymerase II-specific" GO:0003700 "DNA-binding transcription factor activity" GO:0140110 "transcription regulator activity" parentTerm GO:0000981 "DNA-binding transcription factor activity, RNA polymerase II-specific" GO:0003700 "DNA-binding transcription factor activity, RNA polymerase II-specific" GO:0140110 "DNA-binding transcription factor activity, RNA polymerase II-specific" Number of Molecular function parent terms: DNA-binding transcription factor activity, RNA polymerase II-specific 3 No Cellular component parent terms found. Number of GO terms for which NO parent term was found: 0 -------------------------------------------------------------- No enriched KEGG pathways. ######################################################################################################################## Cluster number 11 Number of genes in cluster 11 is: 377 Genes in cluster 11 are: [1] "AO090001000006" "AO090001000007" "AO090001000008" "AO090001000110" "AO090001000140" "AO090001000143" [7] "AO090001000186" "AO090001000257" "AO090001000295" "AO090001000313" "AO090001000431" "AO090001000492" [13] "AO090001000534" "AO090001000590" "AO090001000598" "AO090001000621" "AO090001000649" "AO090001000679" [19] "AO090003000006" "AO090003000028" "AO090003000129" "AO090003000216" "AO090003000220" "AO090003000243" [25] "AO090003000328" "AO090003000357" "AO090003000384" "AO090003000493" "AO090003000494" "AO090003000496" [31] "AO090003000497" "AO090003000578" "AO090003000703" "AO090003000741" "AO090003000751" "AO090003000752" [37] "AO090003000753" "AO090003000788" "AO090003000794" "AO090003000795" "AO090003000851" "AO090003000866" [43] "AO090003000888" "AO090003000931" "AO090003000932" "AO090003000994" "AO090003001260" "AO090003001263" [49] "AO090003001335" "AO090003001364" "AO090003001389" "AO090003001399" "AO090003001408" "AO090003001422" [55] "AO090003001426" "AO090003001490" "AO090003001525" "AO090003001526" "AO090003001553" "AO090005000039" [61] "AO090005000122" "AO090005000169" "AO090005000196" "AO090005000198" "AO090005000202" "AO090005000288" [67] "AO090005000309" "AO090005000336" "AO090005000337" "AO090005000401" "AO090005000457" "AO090005000501" [73] "AO090005000532" "AO090005000534" "AO090005000684" "AO090005000687" "AO090005000692" "AO090005000693" [79] "AO090005000779" "AO090005000942" "AO090005000990" "AO090005001026" "AO090005001065" "AO090005001109" [85] "AO090005001159" "AO090005001160" "AO090005001183" "AO090005001229" "AO090005001321" "AO090005001331" [91] "AO090005001416" "AO090005001458" "AO090005001506" "AO090005001564" "AO090005001576" "AO090009000026" [97] "AO090009000063" "AO090009000070" "AO090009000101" "AO090009000134" "AO090009000139" "AO090009000159" [103] "AO090009000211" "AO090009000214" "AO090009000285" "AO090009000314" "AO090009000383" "AO090009000392" [109] "AO090009000417" "AO090009000547" "AO090009000568" "AO090009000585" "AO090009000588" "AO090009000635" [115] "AO090010000089" "AO090010000102" "AO090010000147" "AO090010000266" "AO090010000391" "AO090010000397" [121] "AO090010000398" "AO090010000402" "AO090010000429" "AO090010000518" "AO090010000562" "AO090010000570" [127] "AO090010000589" "AO090010000592" "AO090010000600" "AO090010000610" "AO090010000660" "AO090010000669" [133] "AO090010000687" "AO090010000735" "AO090010000739" "AO090010000740" "AO090011000024" "AO090011000066" [139] "AO090011000070" "AO090011000084" "AO090011000117" "AO090011000118" "AO090011000151" "AO090011000182" [145] "AO090011000183" "AO090011000246" "AO090011000255" "AO090011000264" "AO090011000293" "AO090011000294" [151] "AO090011000295" "AO090011000296" "AO090011000298" "AO090011000307" "AO090011000308" "AO090011000334" [157] "AO090011000370" "AO090011000374" "AO090011000425" "AO090011000435" "AO090011000447" "AO090011000472" [163] "AO090011000517" "AO090011000620" "AO090011000654" "AO090011000844" "AO090011000848" "AO090011000859" [169] "AO090011000869" "AO090011000870" "AO090012000058" "AO090012000073" "AO090012000102" "AO090012000211" [175] "AO090012000227" "AO090012000235" "AO090012000280" "AO090012000350" "AO090012000357" "AO090012000365" [181] "AO090012000423" "AO090012000435" "AO090012000559" "AO090012000564" "AO090012000602" "AO090012000616" [187] "AO090012000676" "AO090012000825" "AO090012000845" "AO090012000888" "AO090012000964" "AO090020000074" [193] "AO090020000093" "AO090020000144" "AO090020000170" "AO090020000204" "AO090020000211" "AO090020000216" [199] "AO090020000227" "AO090020000229" "AO090020000233" "AO090020000315" "AO090020000324" "AO090020000336" [205] "AO090020000369" "AO090020000492" "AO090020000493" "AO090020000532" "AO090020000535" "AO090020000546" [211] "AO090020000589" "AO090020000595" "AO090020000671" "AO090020000676" "AO090020000699" "AO090020000700" [217] "AO090023000052" "AO090023000066" "AO090023000068" "AO090023000113" "AO090023000213" "AO090023000257" [223] "AO090023000283" "AO090023000288" "AO090023000292" "AO090023000346" "AO090023000356" "AO090023000450" [229] "AO090023000456" "AO090023000467" "AO090023000493" "AO090023000517" "AO090023000518" "AO090023000528" [235] "AO090023000552" "AO090023000586" "AO090023000614" "AO090023000749" "AO090023000783" "AO090023000800" [241] "AO090023000972" "AO090023000995" "AO090026000047" "AO090026000060" "AO090026000061" "AO090026000107" [247] "AO090026000150" "AO090026000173" "AO090026000205" "AO090026000211" "AO090026000217" "AO090026000219" [253] "AO090026000316" "AO090026000555" "AO090026000673" "AO090026000681" "AO090026000682" "AO090026000735" [259] "AO090026000736" "AO090026000739" "AO090026000740" "AO090026000760" "AO090038000049" "AO090038000050" [265] "AO090038000051" "AO090038000058" "AO090038000107" "AO090038000108" "AO090038000131" "AO090038000171" [271] "AO090038000172" "AO090038000235" "AO090038000256" "AO090038000259" "AO090038000261" "AO090038000266" [277] "AO090038000331" "AO090038000332" "AO090038000338" "AO090038000520" "AO090038000537" "AO090038000620" [283] "AO090038000626" "AO090038000629" "AO090102000079" "AO090102000094" "AO090102000184" "AO090102000185" [289] "AO090102000191" "AO090102000283" "AO090102000298" "AO090102000330" "AO090102000341" "AO090102000410" [295] "AO090102000411" "AO090102000444" "AO090102000461" "AO090102000467" "AO090102000514" "AO090102000588" [301] "AO090102000639" "AO090103000026" "AO090103000059" "AO090103000104" "AO090103000106" "AO090103000107" [307] "AO090103000131" "AO090103000153" "AO090103000283" "AO090103000285" "AO090103000298" "AO090103000316" [313] "AO090103000328" "AO090103000334" "AO090103000390" "AO090103000418" "AO090103000419" "AO090103000420" [319] "AO090103000492" "AO090113000043" "AO090120000008" "AO090120000018" "AO090120000054" "AO090120000059" [325] "AO090120000158" "AO090120000182" "AO090120000218" "AO090120000370" "AO090120000371" "AO090120000372" [331] "AO090124000003" "AO090124000047" "AO090124000067" "AO090138000010" "AO090138000034" "AO090138000035" [337] "AO090138000036" "AO090138000052" "AO090138000053" "AO090138000065" "AO090138000085" "AO090138000086" [343] "AO090138000090" "AO090138000154" "AO090138000196" "AO090166000060" "AO090166000067" "AO090166000072" [349] "AO090166000075" "AO090166000096" "AO090166000099" "AO090166000116" "AO090166000117" "AO090206000060" [355] "AO090206000102" "AO090701000013" "AO090701000035" "AO090701000128" "AO090701000175" "AO090701000176" [361] "AO090701000205" "AO090701000234" "AO090701000249" "AO090701000276" "AO090701000311" "AO090701000347" [367] "AO090701000361" "AO090701000362" "AO090701000462" "AO090701000490" "AO090701000599" "AO090701000768" [373] "AO090701000769" "AO090701000893" "AO090701000894" "AO090701000896" "AO090701000899" -------------------------------------------------------------- Number of enriched GO terms: 5 GO terms are: [1] "EC:3.5.1.4" [2] "amidase activity" [3] "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" [4] "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides" [5] "indoleacetamide hydrolase activity" Parent terms retrieved using org.Sc.sgd.db (S. cerevisiae) No Biological process parent terms found. Molecular function parent terms of GO terms are: term GO:0004040 "amidase activity" GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" GO:0016811 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides" GO:0043864 "indoleacetamide hydrolase activity" parentTerm GO:0004040 "amidase activity" GO:0016810 "amidase activity" GO:0016811 "amidase activity" GO:0043864 "amidase activity" Number of Molecular function parent terms: amidase activity 4 No Cellular component parent terms found. Number of GO terms for which NO parent term was found: 1 No parent term was found for the following GO terms: [1] "EC:3.5.1.4" -------------------------------------------------------------- Number of enriched KEGG pathways: 8 KEGG pathways are: [1] "Tryptophan metabolism - Aspergillus oryzae" [2] "Phenylalanine metabolism - Aspergillus oryzae" [3] "Fatty acid degradation - Aspergillus oryzae" [4] "Pentose and glucuronate interconversions - Aspergillus oryzae" [5] "Pyruvate metabolism - Aspergillus oryzae" [6] "Valine, leucine and isoleucine degradation - Aspergillus oryzae" [7] "Arginine and proline metabolism - Aspergillus oryzae" [8] "Glycolysis / Gluconeogenesis - Aspergillus oryzae" ######################################################################################################################## Cluster number 12 Number of genes in cluster 12 is: 858 Genes in cluster 12 are: [1] "AO090001000020" "AO090001000062" "AO090001000066" "AO090001000073" "AO090001000087" "AO090001000112" [7] "AO090001000134" "AO090001000162" "AO090001000175" "AO090001000200" "AO090001000250" "AO090001000252" [13] "AO090001000262" "AO090001000269" "AO090001000283" "AO090001000285" "AO090001000288" "AO090001000291" [19] "AO090001000293" "AO090001000298" "AO090001000311" "AO090001000314" "AO090001000317" "AO090001000373" [25] "AO090001000384" "AO090001000385" "AO090001000392" "AO090001000394" "AO090001000404" "AO090001000447" [31] "AO090001000450" "AO090001000464" "AO090001000474" "AO090001000510" "AO090001000528" "AO090001000531" [37] "AO090001000535" "AO090001000537" "AO090001000538" "AO090001000539" "AO090001000544" "AO090001000588" [43] "AO090001000589" "AO090001000606" "AO090001000608" "AO090001000618" "AO090001000619" "AO090001000624" [49] "AO090001000625" "AO090001000633" "AO090001000717" "AO090003000023" "AO090003000044" "AO090003000045" [55] "AO090003000050" "AO090003000077" "AO090003000131" "AO090003000175" "AO090003000212" "AO090003000239" [61] "AO090003000254" "AO090003000256" "AO090003000260" "AO090003000276" "AO090003000277" "AO090003000334" [67] "AO090003000335" "AO090003000337" "AO090003000338" "AO090003000349" "AO090003000354" "AO090003000380" [73] "AO090003000446" "AO090003000460" "AO090003000475" "AO090003000553" "AO090003000580" "AO090003000704" [79] "AO090003000705" "AO090003000706" "AO090003000709" "AO090003000738" "AO090003000747" "AO090003000773" [85] "AO090003000782" "AO090003000823" "AO090003000825" "AO090003000833" "AO090003000863" "AO090003000864" [91] "AO090003000890" "AO090003000908" "AO090003000933" "AO090003000941" "AO090003000962" "AO090003001008" [97] "AO090003001016" "AO090003001018" "AO090003001058" "AO090003001100" "AO090003001112" "AO090003001143" [103] "AO090003001241" "AO090003001247" "AO090003001248" "AO090003001259" "AO090003001287" "AO090003001288" [109] "AO090003001289" "AO090003001293" "AO090003001326" "AO090003001333" "AO090003001361" "AO090003001362" [115] "AO090003001363" "AO090003001382" "AO090003001407" "AO090003001411" "AO090003001417" "AO090003001418" [121] "AO090003001421" "AO090003001427" "AO090003001431" "AO090003001432" "AO090003001440" "AO090003001441" [127] "AO090003001444" "AO090003001449" "AO090003001456" "AO090003001504" "AO090003001505" "AO090003001506" [133] "AO090003001507" "AO090003001508" "AO090003001509" "AO090003001511" "AO090003001545" "AO090003001546" [139] "AO090003001547" "AO090003001556" "AO090005000019" "AO090005000021" "AO090005000041" "AO090005000042" [145] "AO090005000049" "AO090005000079" "AO090005000080" "AO090005000081" "AO090005000082" "AO090005000121" [151] "AO090005000125" "AO090005000148" "AO090005000200" "AO090005000201" "AO090005000207" "AO090005000217" [157] "AO090005000228" "AO090005000240" "AO090005000246" "AO090005000248" "AO090005000251" "AO090005000253" [163] "AO090005000262" "AO090005000272" "AO090005000281" "AO090005000297" "AO090005000321" "AO090005000323" [169] "AO090005000332" "AO090005000339" "AO090005000341" "AO090005000371" "AO090005000382" "AO090005000403" [175] "AO090005000423" "AO090005000446" "AO090005000447" "AO090005000484" "AO090005000491" "AO090005000530" [181] "AO090005000536" "AO090005000538" "AO090005000593" "AO090005000599" "AO090005000610" "AO090005000621" [187] "AO090005000634" "AO090005000638" "AO090005000671" "AO090005000672" "AO090005000676" "AO090005000678" [193] "AO090005000698" "AO090005000740" "AO090005000742" "AO090005000747" "AO090005000763" "AO090005000776" [199] "AO090005000799" "AO090005000815" "AO090005000818" "AO090005000899" "AO090005000903" "AO090005000909" [205] "AO090005000915" "AO090005000921" "AO090005000962" "AO090005000972" "AO090005000987" "AO090005000988" [211] "AO090005001019" "AO090005001028" "AO090005001041" "AO090005001049" "AO090005001050" "AO090005001078" [217] "AO090005001084" "AO090005001138" "AO090005001140" "AO090005001189" "AO090005001243" "AO090005001281" [223] "AO090005001307" "AO090005001308" "AO090005001309" "AO090005001328" "AO090005001379" "AO090005001409" [229] "AO090005001410" "AO090005001411" "AO090005001415" "AO090005001418" "AO090005001457" "AO090005001481" [235] "AO090005001527" "AO090005001602" "AO090005001647" "AO090009000018" "AO090009000033" "AO090009000034" [241] "AO090009000035" "AO090009000036" "AO090009000065" "AO090009000083" "AO090009000116" "AO090009000120" [247] "AO090009000142" "AO090009000164" "AO090009000195" "AO090009000320" "AO090009000356" "AO090009000386" [253] "AO090009000388" "AO090009000410" "AO090009000511" "AO090009000535" "AO090009000551" "AO090009000566" [259] "AO090009000580" "AO090009000591" "AO090009t00001" "AO090010000011" "AO090010000015" "AO090010000016" [265] "AO090010000021" "AO090010000025" "AO090010000053" "AO090010000067" "AO090010000087" "AO090010000091" [271] "AO090010000101" "AO090010000110" "AO090010000112" "AO090010000172" "AO090010000176" "AO090010000188" [277] "AO090010000206" "AO090010000289" "AO090010000310" "AO090010000322" "AO090010000323" "AO090010000385" [283] "AO090010000386" "AO090010000486" "AO090010000524" "AO090010000529" "AO090010000531" "AO090010000532" [289] "AO090010000536" "AO090010000555" "AO090010000556" "AO090010000561" "AO090010000563" "AO090010000571" [295] "AO090010000593" "AO090010000594" "AO090010000620" "AO090010000621" "AO090010000627" "AO090010000648" [301] "AO090010000650" "AO090010000663" "AO090010000679" "AO090010000704" "AO090010000710" "AO090010000736" [307] "AO090010000742" "AO090010000745" "AO090010000746" "AO090011000012" "AO090011000013" "AO090011000034" [313] "AO090011000036" "AO090011000042" "AO090011000052" "AO090011000063" "AO090011000074" "AO090011000119" [319] "AO090011000181" "AO090011000195" "AO090011000198" "AO090011000220" "AO090011000236" "AO090011000249" [325] "AO090011000256" "AO090011000261" "AO090011000286" "AO090011000287" "AO090011000297" "AO090011000315" [331] "AO090011000352" "AO090011000362" "AO090011000396" "AO090011000397" "AO090011000434" "AO090011000520" [337] "AO090011000524" "AO090011000526" "AO090011000538" "AO090011000558" "AO090011000564" "AO090011000575" [343] "AO090011000613" "AO090011000671" "AO090011000693" "AO090011000718" "AO090011000725" "AO090011000744" [349] "AO090011000747" "AO090011000749" "AO090011000808" "AO090011000818" "AO090011000852" "AO090011000917" [355] "AO090011000942" "AO090011t00006" "AO090012000001" "AO090012000012" "AO090012000029" "AO090012000033" [361] "AO090012000034" "AO090012000035" "AO090012000038" "AO090012000044" "AO090012000061" "AO090012000064" [367] "AO090012000066" "AO090012000069" "AO090012000097" "AO090012000109" "AO090012000116" "AO090012000123" [373] "AO090012000137" "AO090012000146" "AO090012000166" "AO090012000171" "AO090012000193" "AO090012000218" [379] "AO090012000219" "AO090012000237" "AO090012000283" "AO090012000294" "AO090012000296" "AO090012000323" [385] "AO090012000324" "AO090012000326" "AO090012000327" "AO090012000328" "AO090012000341" "AO090012000354" [391] "AO090012000359" "AO090012000360" "AO090012000361" "AO090012000362" "AO090012000368" "AO090012000376" [397] "AO090012000388" "AO090012000389" "AO090012000390" "AO090012000392" "AO090012000440" "AO090012000464" [403] "AO090012000465" "AO090012000490" "AO090012000491" "AO090012000525" "AO090012000555" "AO090012000606" [409] "AO090012000617" "AO090012000618" "AO090012000655" "AO090012000656" "AO090012000663" "AO090012000704" [415] "AO090012000731" "AO090012000735" "AO090012000742" "AO090012000751" "AO090012000765" "AO090012000795" [421] "AO090012000839" "AO090012000843" "AO090012000862" "AO090012000863" "AO090012000870" "AO090012000871" [427] "AO090012000881" "AO090012000944" "AO090012000945" "AO090012000946" "AO090020000029" "AO090020000095" [433] "AO090020000130" "AO090020000137" "AO090020000138" "AO090020000142" "AO090020000149" "AO090020000151" [439] "AO090020000182" "AO090020000223" "AO090020000224" "AO090020000225" "AO090020000232" "AO090020000247" [445] "AO090020000267" "AO090020000289" "AO090020000362" "AO090020000367" "AO090020000391" "AO090020000438" [451] "AO090020000439" "AO090020000440" "AO090020000495" "AO090020000504" "AO090020000529" "AO090020000547" [457] "AO090020000559" "AO090020000571" "AO090020000574" "AO090020000607" "AO090020000610" "AO090020000611" [463] "AO090020000649" "AO090020000674" "AO090020000702" "AO090020000713" "AO090023000010" "AO090023000012" [469] "AO090023000026" "AO090023000054" "AO090023000065" "AO090023000075" "AO090023000079" "AO090023000080" [475] "AO090023000095" "AO090023000131" "AO090023000132" "AO090023000143" "AO090023000151" "AO090023000169" [481] "AO090023000214" "AO090023000254" "AO090023000279" "AO090023000280" "AO090023000282" "AO090023000284" [487] "AO090023000285" "AO090023000287" "AO090023000299" "AO090023000323" "AO090023000341" "AO090023000348" [493] "AO090023000349" "AO090023000358" "AO090023000359" "AO090023000361" "AO090023000362" "AO090023000363" [499] "AO090023000371" "AO090023000397" "AO090023000399" "AO090023000439" "AO090023000452" "AO090023000453" [505] "AO090023000463" "AO090023000490" "AO090023000523" "AO090023000531" "AO090023000545" "AO090023000546" [511] "AO090023000560" "AO090023000564" "AO090023000600" "AO090023000602" "AO090023000613" "AO090023000674" [517] "AO090023000705" "AO090023000717" "AO090023000720" "AO090023000721" "AO090023000722" "AO090023000741" [523] "AO090023000744" "AO090023000784" "AO090023000790" "AO090023000799" "AO090023000804" "AO090023000902" [529] "AO090023000919" "AO090023000944" "AO090023000946" "AO090023000951" "AO090023000959" "AO090023000970" [535] "AO090023000984" "AO090026000002" "AO090026000004" "AO090026000043" "AO090026000048" "AO090026000050" [541] "AO090026000052" "AO090026000058" "AO090026000076" "AO090026000080" "AO090026000101" "AO090026000111" [547] "AO090026000131" "AO090026000137" "AO090026000149" "AO090026000175" "AO090026000187" "AO090026000199" [553] "AO090026000207" "AO090026000210" "AO090026000252" "AO090026000253" "AO090026000257" "AO090026000300" [559] "AO090026000304" "AO090026000305" "AO090026000306" "AO090026000312" "AO090026000313" "AO090026000381" [565] "AO090026000405" "AO090026000408" "AO090026000409" "AO090026000461" "AO090026000482" "AO090026000484" [571] "AO090026000530" "AO090026000559" "AO090026000640" "AO090026000641" "AO090026000648" "AO090026000668" [577] "AO090026000669" "AO090026000757" "AO090026000767" "AO090026000770" "AO090026000774" "AO090026000784" [583] "AO090026000798" "AO090026000804" "AO090026000826" "AO090038000001" "AO090038000017" "AO090038000025" [589] "AO090038000042" "AO090038000043" "AO090038000047" "AO090038000062" "AO090038000122" "AO090038000123" [595] "AO090038000124" "AO090038000125" "AO090038000141" "AO090038000180" "AO090038000181" "AO090038000184" [601] "AO090038000197" "AO090038000223" "AO090038000233" "AO090038000234" "AO090038000240" "AO090038000250" [607] "AO090038000251" "AO090038000267" "AO090038000337" "AO090038000416" "AO090038000421" "AO090038000422" [613] "AO090038000439" "AO090038000448" "AO090038000460" "AO090038000471" "AO090038000473" "AO090038000474" [619] "AO090038000475" "AO090038000495" "AO090038000507" "AO090038000508" "AO090038000569" "AO090038000570" [625] "AO090102000032" "AO090102000047" "AO090102000053" "AO090102000067" "AO090102000076" "AO090102000089" [631] "AO090102000090" "AO090102000091" "AO090102000092" "AO090102000095" "AO090102000125" "AO090102000152" [637] "AO090102000177" "AO090102000186" "AO090102000187" "AO090102000216" "AO090102000284" "AO090102000285" [643] "AO090102000296" "AO090102000303" "AO090102000315" "AO090102000320" "AO090102000321" "AO090102000329" [649] "AO090102000346" "AO090102000350" "AO090102000359" "AO090102000386" "AO090102000404" "AO090102000412" [655] "AO090102000414" "AO090102000421" "AO090102000441" "AO090102000448" "AO090102000457" "AO090102000470" [661] "AO090102000471" "AO090102000473" "AO090102000483" "AO090102000649" "AO090103000003" "AO090103000025" [667] "AO090103000036" "AO090103000046" "AO090103000057" "AO090103000095" "AO090103000105" "AO090103000121" [673] "AO090103000127" "AO090103000129" "AO090103000130" "AO090103000132" "AO090103000144" "AO090103000145" [679] "AO090103000146" "AO090103000147" "AO090103000149" "AO090103000222" "AO090103000225" "AO090103000240" [685] "AO090103000252" "AO090103000259" "AO090103000260" "AO090103000265" "AO090103000266" "AO090103000267" [691] "AO090103000268" "AO090103000284" "AO090103000286" "AO090103000287" "AO090103000296" "AO090103000299" [697] "AO090103000336" "AO090103000359" "AO090103000360" "AO090103000369" "AO090103000374" "AO090103000391" [703] "AO090103000435" "AO090103000447" "AO090103000448" "AO090103000449" "AO090103000450" "AO090103000452" [709] "AO090103000465" "AO090103000467" "AO090103000471" "AO090103000472" "AO090103000474" "AO090103000496" [715] "AO090103000507" "AO090103000508" "AO090103t00011" "AO090113000021" "AO090113000029" "AO090113000040" [721] "AO090113000044" "AO090113000046" "AO090113000052" "AO090113000061" "AO090113000065" "AO090113000066" [727] "AO090113000103" "AO090113000112" "AO090113000143" "AO090113000155" "AO090113000164" "AO090113000165" [733] "AO090113000192" "AO090113000195" "AO090113000196" "AO090120000021" "AO090120000029" "AO090120000036" [739] "AO090120000062" "AO090120000075" "AO090120000086" "AO090120000102" "AO090120000106" "AO090120000180" [745] "AO090120000195" "AO090120000196" "AO090120000230" "AO090120000232" "AO090120000241" "AO090120000260" [751] "AO090120000286" "AO090120000287" "AO090120000300" "AO090120000374" "AO090120000406" "AO090120000492" [757] "AO090124000010" "AO090124000011" "AO090124000016" "AO090124000023" "AO090124000063" "AO090124000068" [763] "AO090138000007" "AO090138000009" "AO090138000051" "AO090138000055" "AO090138000066" "AO090138000067" [769] "AO090138000068" "AO090138000088" "AO090138000114" "AO090138000120" "AO090138000132" "AO090138000150" [775] "AO090138000151" "AO090138000152" "AO090138000173" "AO090138000201" "AO090138000202" "AO090166000043" [781] "AO090166000044" "AO090166000089" "AO090166000093" "AO090166000095" "AO090166000118" "AO090166000119" [787] "AO090166000121" "AO090206000126" "AO090308000009" "AO090701000042" "AO090701000156" "AO090701000177" [793] "AO090701000178" "AO090701000202" "AO090701000238" "AO090701000242" "AO090701000246" "AO090701000274" [799] "AO090701000288" "AO090701000304" "AO090701000305" "AO090701000313" "AO090701000314" "AO090701000315" [805] "AO090701000316" "AO090701000325" "AO090701000326" "AO090701000345" "AO090701000353" "AO090701000363" [811] "AO090701000364" "AO090701000366" "AO090701000370" "AO090701000388" "AO090701000404" "AO090701000405" [817] "AO090701000406" "AO090701000411" "AO090701000415" "AO090701000428" "AO090701000430" "AO090701000449" [823] "AO090701000461" "AO090701000466" "AO090701000470" "AO090701000474" "AO090701000489" "AO090701000492" [829] "AO090701000509" "AO090701000510" "AO090701000528" "AO090701000530" "AO090701000540" "AO090701000542" [835] "AO090701000548" "AO090701000563" "AO090701000564" "AO090701000565" "AO090701000569" "AO090701000580" [841] "AO090701000581" "AO090701000595" "AO090701000603" "AO090701000605" "AO090701000629" "AO090701000630" [847] "AO090701000631" "AO090701000633" "AO090701000666" "AO090701000712" "AO090701000737" "AO090701000774" [853] "AO090701000838" "AO090701000853" "AO090701000854" "AO090701000886" "AO090701000905" "AO090701000906" -------------------------------------------------------------- Number of enriched GO terms: 7 GO terms are: [1] "GO:0022891" [2] "hydrolase activity, acting on glycosyl bonds" [3] "hydrolase activity, hydrolyzing O-glycosyl compounds" [4] "nucleoside metabolic process" [5] "extracellular region" [6] "carbohydrate metabolic process" [7] "glycosyl compound metabolic process" Parent terms retrieved using org.Sc.sgd.db (S. cerevisiae) Biological process parent terms of GO terms are: term parentTerm GO:0009116 "nucleoside metabolic process" "nucleoside metabolic process" GO:0005975 "carbohydrate metabolic process" "carbohydrate metabolic process" GO:1901657 "glycosyl compound metabolic process" "nucleoside metabolic process" Number of Biological process parent terms: carbohydrate metabolic process nucleoside metabolic process 1 2 Molecular function parent terms of GO terms are: term GO:0016798 "hydrolase activity, acting on glycosyl bonds" GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" parentTerm GO:0016798 "hydrolase activity, acting on glycosyl bonds" GO:0004553 "hydrolase activity, acting on glycosyl bonds" Number of Molecular function parent terms: hydrolase activity, acting on glycosyl bonds 2 No Cellular component parent terms found. Number of GO terms for which NO parent term was found: 2 No parent term was found for the following GO terms: [1] "GO:0022891" "extracellular region" -------------------------------------------------------------- Number of enriched KEGG pathways: 6 KEGG pathways are: [1] "Starch and sucrose metabolism - Aspergillus oryzae" [2] "Galactose metabolism - Aspergillus oryzae" [3] "Cyanoamino acid metabolism - Aspergillus oryzae" [4] "Sphingolipid metabolism - Aspergillus oryzae" [5] "Biosynthesis of various plant secondary metabolites - Aspergillus oryzae" [6] "Propanoate metabolism - Aspergillus oryzae" ######################################################################################################################## Cluster number 13 Number of genes in cluster 13 is: 209 Genes in cluster 13 are: [1] "AO090001000070" "AO090001000128" "AO090001000129" "AO090001000142" "AO090001000224" "AO090001000294" [7] "AO090001000337" "AO090001000353" "AO090001000412" "AO090001000429" "AO090001000480" "AO090001000481" [13] "AO090001000489" "AO090001000601" "AO090001000616" "AO090001000636" "AO090001000637" "AO090001000638" [19] "AO090001000710" "AO090001000723" "AO090001000726" "AO090003000003" "AO090003000142" "AO090003000143" [25] "AO090003000154" "AO090003000205" "AO090003000221" "AO090003000362" "AO090003000363" "AO090003000557" [31] "AO090003000574" "AO090003000635" "AO090003000697" "AO090003000707" "AO090003000748" "AO090003000769" [37] "AO090003000791" "AO090003000906" "AO090003000980" "AO090003000982" "AO090003000996" "AO090003001056" [43] "AO090003001069" "AO090003001085" "AO090003001179" "AO090003001199" "AO090003001207" "AO090003001242" [49] "AO090003001351" "AO090003001474" "AO090005000250" "AO090005000380" "AO090005000489" "AO090005000495" [55] "AO090005000556" "AO090005000682" "AO090005000801" "AO090005000900" "AO090005000936" "AO090005000995" [61] "AO090005001032" "AO090005001097" "AO090005001207" "AO090005001319" "AO090005001490" "AO090005001603" [67] "AO090005001620" "AO090009000185" "AO090009000212" "AO090009000281" "AO090009000350" "AO090009000445" [73] "AO090009000467" "AO090009000468" "AO090009000516" "AO090009000597" "AO090009000605" "AO090009000617" [79] "AO090009000622" "AO090009000667" "AO090009000708" "AO090010000444" "AO090010000445" "AO090010000447" [85] "AO090010000479" "AO090010000487" "AO090010000674" "AO090010000675" "AO090010000723" "AO090010000724" [91] "AO090010000754" "AO090010t00010" "AO090011000102" "AO090011000103" "AO090011000105" "AO090011000106" [97] "AO090011000344" "AO090011000351" "AO090011000563" "AO090011000698" "AO090011000706" "AO090011000916" [103] "AO090011000925" "AO090011000931" "AO090011000934" "AO090012000295" "AO090012000297" "AO090012000303" [109] "AO090012000397" "AO090012000403" "AO090012000415" "AO090012000416" "AO090012000495" "AO090012000496" [115] "AO090012000632" "AO090012000652" "AO090012000668" "AO090012000759" "AO090012000844" "AO090020000006" [121] "AO090020000007" "AO090020000089" "AO090020000169" "AO090020000241" "AO090020000373" "AO090020000490" [127] "AO090020000497" "AO090020000500" "AO090020000502" "AO090020000603" "AO090020000622" "AO090020000644" [133] "AO090020000669" "AO090020t00005" "AO090023000205" "AO090023000206" "AO090023000256" "AO090023000325" [139] "AO090023000327" "AO090023000365" "AO090023000424" "AO090023000626" "AO090023000648" "AO090023000763" [145] "AO090023000845" "AO090023000887" "AO090023000932" "AO090026000084" "AO090026000085" "AO090026000231" [151] "AO090026000271" "AO090026000343" "AO090026000371" "AO090026000532" "AO090026000570" "AO090026000573" [157] "AO090026000617" "AO090026000618" "AO090026000619" "AO090026000719" "AO090026t00010" "AO090038000215" [163] "AO090038000218" "AO090038000253" "AO090038000268" "AO090038000269" "AO090038000410" "AO090038000417" [169] "AO090038000554" "AO090038000558" "AO090038000587" "AO090102000065" "AO090102000167" "AO090102000288" [175] "AO090102000304" "AO090102000517" "AO090102000579" "AO090102000602" "AO090102000618" "AO090102000630" [181] "AO090103000056" "AO090103000128" "AO090103000180" "AO090103000273" "AO090103000317" "AO090103000502" [187] "AO090113000001" "AO090113000038" "AO090113000062" "AO090113000121" "AO090113000147" "AO090120000318" [193] "AO090120000338" "AO090120000398" "AO090124000084" "AO090138000093" "AO090206000069" "AO090206000070" [199] "AO090701000073" "AO090701000172" "AO090701000217" "AO090701000687" "AO090701000688" "AO090701000689" [205] "AO090701000705" "AO090701000735" "AO090701000742" "AO090701000743" "AO090701000750" -------------------------------------------------------------- Number of enriched GO terms: 2 GO terms are: [1] "phosphorylation" "nucleosome" Parent terms retrieved using org.Sc.sgd.db (S. cerevisiae) No Biological process parent terms found. No Molecular function parent terms found. No Cellular component parent terms found. Number of GO terms for which NO parent term was found: 2 No parent term was found for the following GO terms: [1] "phosphorylation" "nucleosome" -------------------------------------------------------------- Number of enriched KEGG pathways: 1 KEGG pathways are: [1] "Biosynthesis of nucleotide sugars - Aspergillus oryzae" ######################################################################################################################## Cluster number 14 Number of genes in cluster 14 is: 414 Genes in cluster 14 are: [1] "AO090001000036" "AO090001000153" "AO090001000197" "AO090001000265" "AO090001000266" "AO090001000356" [7] "AO090001000358" "AO090001000375" "AO090001000377" "AO090001000382" "AO090001000486" "AO090001000504" [13] "AO090001000525" "AO090001000675" "AO090003000055" "AO090003000061" "AO090003000070" "AO090003000090" [19] "AO090003000144" "AO090003000162" "AO090003000163" "AO090003000180" "AO090003000222" "AO090003000241" [25] "AO090003000301" "AO090003000316" "AO090003000371" "AO090003000372" "AO090003000413" "AO090003000415" [31] "AO090003000465" "AO090003000477" "AO090003000545" "AO090003000548" "AO090003000616" "AO090003000628" [37] "AO090003000629" "AO090003000661" "AO090003000666" "AO090003000725" "AO090003000729" "AO090003000801" [43] "AO090003000807" "AO090003000831" "AO090003000954" "AO090003000970" "AO090003000984" "AO090003001011" [49] "AO090003001019" "AO090003001046" "AO090003001055" "AO090003001063" "AO090003001096" "AO090003001097" [55] "AO090003001165" "AO090003001171" "AO090003001215" "AO090003001232" "AO090003001250" "AO090003001281" [61] "AO090003001322" "AO090003001390" "AO090003001424" "AO090003001496" "AO090003001497" "AO090005000022" [67] "AO090005000031" "AO090005000072" "AO090005000085" "AO090005000133" "AO090005000135" "AO090005000159" [73] "AO090005000188" "AO090005000302" "AO090005000405" "AO090005000425" "AO090005000436" "AO090005000456" [79] "AO090005000478" "AO090005000504" "AO090005000553" "AO090005000583" "AO090005000584" "AO090005000619" [85] "AO090005000683" "AO090005000706" "AO090005000728" "AO090005000729" "AO090005000770" "AO090005000828" [91] "AO090005000879" "AO090005000883" "AO090005001062" "AO090005001074" "AO090005001107" "AO090005001108" [97] "AO090005001117" "AO090005001121" "AO090005001164" "AO090005001192" "AO090005001230" "AO090005001239" [103] "AO090005001272" "AO090005001280" "AO090005001300" "AO090005001302" "AO090005001315" "AO090005001340" [109] "AO090005001361" "AO090005001431" "AO090005001442" "AO090005001450" "AO090005001451" "AO090005001556" [115] "AO090009000037" "AO090009000047" "AO090009000117" "AO090009000149" "AO090009000175" "AO090009000186" [121] "AO090009000201" "AO090009000215" "AO090009000265" "AO090009000267" "AO090009000269" "AO090009000294" [127] "AO090009000305" "AO090009000345" "AO090009000352" "AO090009000413" "AO090009000436" "AO090009000544" [133] "AO090009000589" "AO090009000606" "AO090009000634" "AO090009000665" "AO090009000682" "AO090010000022" [139] "AO090010000032" "AO090010000063" "AO090010000153" "AO090010000195" "AO090010000201" "AO090010000228" [145] "AO090010000242" "AO090010000313" "AO090010000345" "AO090010000443" "AO090010000463" "AO090010000466" [151] "AO090010000476" "AO090010000574" "AO090010000623" "AO090010000649" "AO090010000667" "AO090010000699" [157] "AO090010000713" "AO090010000725" "AO090010000753" "AO090011000126" "AO090011000170" "AO090011000202" [163] "AO090011000203" "AO090011000215" "AO090011000280" "AO090011000323" "AO090011000324" "AO090011000360" [169] "AO090011000410" "AO090011000411" "AO090011000412" "AO090011000456" "AO090011000506" "AO090011000572" [175] "AO090011000588" "AO090011000598" "AO090011000638" "AO090011000651" "AO090011000656" "AO090011000694" [181] "AO090011000715" "AO090011000756" "AO090011000764" "AO090011000768" "AO090011000780" "AO090011000838" [187] "AO090011000845" "AO090011000876" "AO090012000027" "AO090012000051" "AO090012000098" "AO090012000110" [193] "AO090012000168" "AO090012000394" "AO090012000399" "AO090012000414" "AO090012000418" "AO090012000450" [199] "AO090012000479" "AO090012000505" "AO090012000514" "AO090012000571" "AO090012000581" "AO090012000604" [205] "AO090012000629" "AO090012000815" "AO090012000831" "AO090012000873" "AO090012000877" "AO090012000890" [211] "AO090012000900" "AO090012000928" "AO090012000979" "AO090012000982" "AO090012000983" "AO090012000995" [217] "AO090012000998" "AO090020000085" "AO090020000109" "AO090020000122" "AO090020000192" "AO090020000197" [223] "AO090020000246" "AO090020000287" "AO090020000314" "AO090020000403" "AO090020000404" "AO090020000415" [229] "AO090020000419" "AO090020000489" "AO090020000501" "AO090020000549" "AO090020000550" "AO090020000564" [235] "AO090020000602" "AO090020000608" "AO090020000618" "AO090020000634" "AO090020000667" "AO090023000033" [241] "AO090023000069" "AO090023000099" "AO090023000122" "AO090023000133" "AO090023000140" "AO090023000141" [247] "AO090023000149" "AO090023000226" "AO090023000227" "AO090023000318" "AO090023000339" "AO090023000366" [253] "AO090023000412" "AO090023000429" "AO090023000430" "AO090023000431" "AO090023000440" "AO090023000469" [259] "AO090023000478" "AO090023000520" "AO090023000522" "AO090023000532" "AO090023000644" "AO090023000667" [265] "AO090023000680" "AO090023000682" "AO090023000685" "AO090023000689" "AO090023000757" "AO090023000801" [271] "AO090023000863" "AO090023000874" "AO090023000882" "AO090023000886" "AO090023000895" "AO090023000896" [277] "AO090023000910" "AO090023000912" "AO090023000918" "AO090023000927" "AO090023000949" "AO090023000968" [283] "AO090023000977" "AO090023000996" "AO090023001002" "AO090026000025" "AO090026000055" "AO090026000090" [289] "AO090026000183" "AO090026000198" "AO090026000267" "AO090026000284" "AO090026000291" "AO090026000332" [295] "AO090026000334" "AO090026000365" "AO090026000375" "AO090026000394" "AO090026000450" "AO090026000471" [301] "AO090026000491" "AO090026000492" "AO090026000494" "AO090026000498" "AO090026000520" "AO090026000557" [307] "AO090026000558" "AO090026000638" "AO090026000651" "AO090026000705" "AO090026000789" "AO090026000842" [313] "AO090038000031" "AO090038000194" "AO090038000281" "AO090038000333" "AO090038000339" "AO090038000386" [319] "AO090038000395" "AO090038000438" "AO090038000463" "AO090038000465" "AO090038000547" "AO090038000553" [325] "AO090102000173" "AO090102000339" "AO090102000418" "AO090102000466" "AO090102000469" "AO090102000493" [331] "AO090102000499" "AO090102000535" "AO090102000554" "AO090102000586" "AO090102000589" "AO090102000620" [337] "AO090102000627" "AO090103000008" "AO090103000075" "AO090103000082" "AO090103000136" "AO090103000138" [343] "AO090103000193" "AO090103000205" "AO090103000338" "AO090103000339" "AO090103000425" "AO090103000477" [349] "AO090113000129" "AO090113000152" "AO090120000015" "AO090120000046" "AO090120000109" "AO090120000112" [355] "AO090120000166" "AO090120000208" "AO090120000210" "AO090120000234" "AO090120000279" "AO090120000281" [361] "AO090120000358" "AO090120000424" "AO090120000439" "AO090120000486" "AO090120000493" "AO090120000502" [367] "AO090124000021" "AO090124000027" "AO090124000028" "AO090124000079" "AO090124000083" "AO090138000043" [373] "AO090138000050" "AO090166000034" "AO090166000070" "AO090166000076" "AO090166000097" "AO090166000120" [379] "AO090206000002" "AO090206000077" "AO090206000117" "AO090701000041" "AO090701000057" "AO090701000078" [385] "AO090701000081" "AO090701000129" "AO090701000146" "AO090701000187" "AO090701000214" "AO090701000215" [391] "AO090701000226" "AO090701000235" "AO090701000259" "AO090701000292" "AO090701000318" "AO090701000321" [397] "AO090701000338" "AO090701000432" "AO090701000433" "AO090701000557" "AO090701000577" "AO090701000614" [403] "AO090701000615" "AO090701000616" "AO090701000617" "AO090701000669" "AO090701000675" "AO090701000709" [409] "AO090701000725" "AO090701000729" "AO090701000738" "AO090701000752" "AO090701000781" "AO090701000858" -------------------------------------------------------------- Number of enriched GO terms: 155 GO terms are: [1] "small molecule biosynthetic process" [2] "amino acid biosynthetic process" [3] "carboxylic acid biosynthetic process" [4] "organic acid biosynthetic process" [5] "oxoacid metabolic process" [6] "organic acid metabolic process" [7] "carboxylic acid metabolic process" [8] "alpha-amino acid biosynthetic process" [9] "amino acid metabolic process" [10] "mitochondrion" [11] "alpha-amino acid metabolic process" [12] "L-amino acid biosynthetic process" [13] "proteinogenic amino acid biosynthetic process" [14] "proteinogenic amino acid metabolic process" [15] "L-amino acid metabolic process" [16] "aspartate family amino acid biosynthetic process" [17] "organophosphate catabolic process" [18] "pyridine-containing compound metabolic process" [19] "pyruvate metabolic process" [20] "mitochondrial envelope" [21] "purine-containing compound catabolic process" [22] "nucleoside phosphate catabolic process" [23] "purine nucleotide catabolic process" [24] "purine ribonucleotide catabolic process" [25] "ribonucleotide catabolic process" [26] "aspartate family amino acid metabolic process" [27] "nucleoside triphosphate metabolic process" [28] "nucleotide catabolic process" [29] "glycolytic process" [30] "nucleoside diphosphate catabolic process" [31] "purine nucleoside diphosphate catabolic process" [32] "purine ribonucleoside diphosphate catabolic process" [33] "ribonucleoside diphosphate catabolic process" [34] "pyridine nucleotide catabolic process" [35] "ADP catabolic process" [36] "pyridine-containing compound catabolic process" [37] "mitochondrial membrane" [38] "purine-containing compound metabolic process" [39] "ATP metabolic process" [40] "ADP metabolic process" [41] "purine ribonucleotide metabolic process" [42] "purine nucleoside triphosphate metabolic process" [43] "purine ribonucleoside triphosphate metabolic process" [44] "purine nucleoside diphosphate metabolic process" [45] "purine ribonucleoside diphosphate metabolic process" [46] "ribonucleoside triphosphate metabolic process" [47] "ribonucleoside diphosphate metabolic process" [48] "nucleotide metabolic process" [49] "nucleoside phosphate metabolic process" [50] "pyridine nucleotide metabolic process" [51] "nucleoside diphosphate metabolic process" [52] "organelle envelope" [53] "envelope" [54] "generation of precursor metabolites and energy" [55] "purine nucleotide metabolic process" [56] "organophosphate metabolic process" [57] "ribonucleotide metabolic process" [58] "ribose phosphate metabolic process" [59] "lysine metabolic process" [60] "mitochondrial matrix" [61] "nicotinamide nucleotide metabolic process" [62] "aromatic amino acid family biosynthetic process" [63] "carbohydrate derivative catabolic process" [64] "glutamine family amino acid metabolic process" [65] "nucleobase-containing small molecule metabolic process" [66] "branched-chain amino acid biosynthetic process" [67] "glutamine metabolic process" [68] "hexose metabolic process" [69] "mitochondrial inner membrane" [70] "sulfur compound biosynthetic process" [71] "organelle inner membrane" [72] "monocarboxylic acid metabolic process" [73] "amine biosynthetic process" [74] "biogenic amine biosynthetic process" [75] "tryptophan metabolic process" [76] "indolalkylamine metabolic process" [77] "indole-containing compound metabolic process" [78] "cellular nitrogen compound catabolic process" [79] "branched-chain amino acid metabolic process" [80] "ubiquinone metabolic process" [81] "ubiquinone biosynthetic process" [82] "quinone metabolic process" [83] "quinone biosynthetic process" [84] "sulfur compound metabolic process" [85] "heterocycle catabolic process" [86] "glucose metabolic process" [87] "nucleobase-containing compound catabolic process" [88] "isoleucine biosynthetic process" [89] "nucleoid" [90] "mitochondrial nucleoid" [91] "homeostatic process" [92] "glutamine family amino acid biosynthetic process" [93] "ATP-dependent protein folding chaperone" [94] "protein folding" [95] "regulation of translational initiation" [96] "isoleucine metabolic process" [97] "sulfur amino acid biosynthetic process" [98] "cellular homeostasis" [99] "organic hydroxy compound biosynthetic process" [100] "organic cyclic compound catabolic process" [101] "serine family amino acid metabolic process" [102] "protein folding chaperone" [103] "aromatic compound catabolic process" [104] "biogenic amine metabolic process" [105] "aromatic amino acid metabolic process" [106] "serine family amino acid biosynthetic process" [107] "methionine biosynthetic process" [108] "amine metabolic process" [109] "transaminase activity" [110] "transferase activity, transferring nitrogenous groups" [111] "vitamin binding" [112] "lyase activity" [113] "protein maturation" [114] "methionine metabolic process" [115] "folic acid-containing compound metabolic process" [116] "arginine metabolic process" [117] "tetrahydrofolate metabolic process" [118] "hydro-lyase activity" [119] "mitochondrial transmembrane transport" [120] "ligase activity" [121] "pyridoxal phosphate binding" [122] "vitamin B6 binding" [123] "pteridine-containing compound metabolic process" [124] "valine metabolic process" [125] "amide metabolic process" [126] "regulation of translation" [127] "amide biosynthetic process" [128] "purine-containing compound biosynthetic process" [129] "acyltransferase activity, acyl groups converted into alkyl on transfer" [130] "sulfur amino acid metabolic process" [131] "monosaccharide metabolic process" [132] "organic hydroxy compound metabolic process" [133] "regulation of amide metabolic process" [134] "cellular modified amino acid metabolic process" [135] "chemical homeostasis" [136] "nucleotide biosynthetic process" [137] "mitochondrial transport" [138] "purine ribonucleotide biosynthetic process" [139] "acetyltransferase activity" [140] "nucleoside phosphate biosynthetic process" [141] "oxidoreductase activity, acting on the CH-NH group of donors" [142] "pyridine-containing compound biosynthetic process" [143] "sterol biosynthetic process" [144] "vitamin biosynthetic process" [145] "water-soluble vitamin biosynthetic process" [146] "purine nucleotide biosynthetic process" [147] "magnesium ion binding" [148] "vitamin metabolic process" [149] "water-soluble vitamin metabolic process" [150] "carbon-oxygen lyase activity" [151] "heme binding" [152] "gluconeogenesis" [153] "hexose biosynthetic process" [154] "monosaccharide biosynthetic process" [155] "cellular response to chemical stress" Parent terms retrieved using org.Sc.sgd.db (S. cerevisiae) Biological process parent terms of GO terms are: term GO:0044283 "small molecule biosynthetic process" GO:0008652 "amino acid biosynthetic process" GO:0046394 "carboxylic acid biosynthetic process" GO:0043436 "oxoacid metabolic process" GO:0016053 "organic acid biosynthetic process" GO:0006082 "organic acid metabolic process" GO:0019752 "carboxylic acid metabolic process" GO:1901607 "alpha-amino acid biosynthetic process" GO:0006520 "amino acid metabolic process" GO:1901605 "alpha-amino acid metabolic process" GO:0009067 "aspartate family amino acid biosynthetic process" GO:0046434 "organophosphate catabolic process" GO:0072524 "pyridine-containing compound metabolic process" GO:0006090 "pyruvate metabolic process" GO:0072523 "purine-containing compound catabolic process" GO:1901292 "nucleoside phosphate catabolic process" GO:0006195 "purine nucleotide catabolic process" GO:0009066 "aspartate family amino acid metabolic process" GO:0009261 "ribonucleotide catabolic process" GO:0009154 "purine ribonucleotide catabolic process" GO:0009141 "nucleoside triphosphate metabolic process" GO:0009134 "nucleoside diphosphate catabolic process" GO:0009137 "purine nucleoside diphosphate catabolic process" GO:0009191 "ribonucleoside diphosphate catabolic process" GO:0009181 "purine ribonucleoside diphosphate catabolic process" GO:0046032 "ADP catabolic process" GO:0006096 "glycolytic process" GO:0072526 "pyridine-containing compound catabolic process" GO:0009166 "nucleotide catabolic process" GO:0019364 "pyridine nucleotide catabolic process" GO:0046034 "ATP metabolic process" GO:0072521 "purine-containing compound metabolic process" GO:0046031 "ADP metabolic process" GO:0009150 "purine ribonucleotide metabolic process" GO:0009205 "purine ribonucleoside triphosphate metabolic process" GO:0009144 "purine nucleoside triphosphate metabolic process" GO:0009135 "purine nucleoside diphosphate metabolic process" GO:0009179 "purine ribonucleoside diphosphate metabolic process" GO:0009199 "ribonucleoside triphosphate metabolic process" GO:0009185 "ribonucleoside diphosphate metabolic process" GO:0009117 "nucleotide metabolic process" GO:0006753 "nucleoside phosphate metabolic process" GO:0019362 "pyridine nucleotide metabolic process" GO:0009132 "nucleoside diphosphate metabolic process" GO:0006091 "generation of precursor metabolites and energy" GO:0006163 "purine nucleotide metabolic process" GO:0019637 "organophosphate metabolic process" GO:0009259 "ribonucleotide metabolic process" GO:0019693 "ribose phosphate metabolic process" GO:0006553 "lysine metabolic process" GO:0046496 "nicotinamide nucleotide metabolic process" GO:0009073 "aromatic amino acid family biosynthetic process" GO:1901136 "carbohydrate derivative catabolic process" GO:0009064 "glutamine family amino acid metabolic process" GO:0055086 "nucleobase-containing small molecule metabolic process" GO:0009082 "branched-chain amino acid biosynthetic process" GO:0006541 "glutamine metabolic process" GO:0019318 "hexose metabolic process" GO:0044272 "sulfur compound biosynthetic process" GO:0032787 "monocarboxylic acid metabolic process" GO:0009309 "amine biosynthetic process" GO:0042401 "biogenic amine biosynthetic process" GO:0042430 "indole-containing compound metabolic process" GO:0006586 "indolalkylamine metabolic process" GO:0006568 "tryptophan metabolic process" GO:0044270 "cellular nitrogen compound catabolic process" GO:0009081 "branched-chain amino acid metabolic process" GO:0006743 "ubiquinone metabolic process" GO:1901661 "quinone metabolic process" GO:0006744 "ubiquinone biosynthetic process" GO:1901663 "quinone biosynthetic process" GO:0006790 "sulfur compound metabolic process" GO:0046700 "heterocycle catabolic process" GO:0006006 "glucose metabolic process" GO:0009097 "isoleucine biosynthetic process" GO:0034655 "nucleobase-containing compound catabolic process" GO:0042592 "homeostatic process" GO:0009084 "glutamine family amino acid biosynthetic process" GO:0006457 "protein folding" GO:0006446 "regulation of translational initiation" GO:0006549 "isoleucine metabolic process" GO:0000097 "sulfur amino acid biosynthetic process" GO:0019725 "cellular homeostasis" GO:1901617 "organic hydroxy compound biosynthetic process" GO:1901361 "organic cyclic compound catabolic process" GO:0009069 "serine family amino acid metabolic process" GO:0019439 "aromatic compound catabolic process" GO:0006576 "biogenic amine metabolic process" GO:0009072 "aromatic amino acid metabolic process" GO:0009070 "serine family amino acid biosynthetic process" GO:0009086 "methionine biosynthetic process" GO:0009308 "amine metabolic process" GO:0051604 "protein maturation" GO:0006760 "folic acid-containing compound metabolic process" GO:0006555 "methionine metabolic process" GO:0006525 "arginine metabolic process" GO:0046653 "tetrahydrofolate metabolic process" GO:1990542 "mitochondrial transmembrane transport" GO:0006573 "valine metabolic process" GO:0042558 "pteridine-containing compound metabolic process" GO:0043603 "amide metabolic process" GO:0006417 "regulation of translation" GO:0043604 "amide biosynthetic process" GO:0072522 "purine-containing compound biosynthetic process" GO:0000096 "sulfur amino acid metabolic process" GO:0005996 "monosaccharide metabolic process" GO:1901615 "organic hydroxy compound metabolic process" GO:0034248 "regulation of amide metabolic process" GO:0006575 "cellular modified amino acid metabolic process" GO:0048878 "chemical homeostasis" GO:0009165 "nucleotide biosynthetic process" GO:0006839 "mitochondrial transport" GO:0009152 "purine ribonucleotide biosynthetic process" GO:1901293 "nucleoside phosphate biosynthetic process" GO:0072525 "pyridine-containing compound biosynthetic process" GO:0016126 "sterol biosynthetic process" GO:0042364 "water-soluble vitamin biosynthetic process" GO:0009110 "vitamin biosynthetic process" GO:0006164 "purine nucleotide biosynthetic process" GO:0006767 "water-soluble vitamin metabolic process" GO:0006766 "vitamin metabolic process" GO:0062197 "cellular response to chemical stress" GO:0046364 "monosaccharide biosynthetic process" GO:0019319 "hexose biosynthetic process" GO:0006094 "gluconeogenesis" parentTerm GO:0044283 "small molecule biosynthetic process" GO:0008652 "small molecule biosynthetic process" GO:0046394 "small molecule biosynthetic process" GO:0043436 "small molecule biosynthetic process" GO:0016053 "small molecule biosynthetic process" GO:0006082 "small molecule biosynthetic process" GO:0019752 "small molecule biosynthetic process" GO:1901607 "alpha-amino acid biosynthetic process" GO:0006520 "alpha-amino acid biosynthetic process" GO:1901605 "alpha-amino acid biosynthetic process" GO:0009067 "alpha-amino acid biosynthetic process" GO:0046434 "organophosphate catabolic process" GO:0072524 "pyridine-containing compound metabolic process" GO:0006090 "small molecule biosynthetic process" GO:0072523 "purine-containing compound catabolic process" GO:1901292 "organophosphate catabolic process" GO:0006195 "purine-containing compound catabolic process" GO:0009066 "alpha-amino acid biosynthetic process" GO:0009261 "organophosphate catabolic process" GO:0009154 "organophosphate catabolic process" GO:0009141 "small molecule biosynthetic process" GO:0009134 "small molecule biosynthetic process" GO:0009137 "small molecule biosynthetic process" GO:0009191 "small molecule biosynthetic process" GO:0009181 "small molecule biosynthetic process" GO:0046032 "small molecule biosynthetic process" GO:0006096 "small molecule biosynthetic process" GO:0072526 "pyridine-containing compound metabolic process" GO:0009166 "organophosphate catabolic process" GO:0019364 "pyridine-containing compound metabolic process" GO:0046034 "small molecule biosynthetic process" GO:0072521 "purine-containing compound metabolic process" GO:0046031 "small molecule biosynthetic process" GO:0009150 "organophosphate catabolic process" GO:0009205 "small molecule biosynthetic process" GO:0009144 "small molecule biosynthetic process" GO:0009135 "small molecule biosynthetic process" GO:0009179 "small molecule biosynthetic process" GO:0009199 "small molecule biosynthetic process" GO:0009185 "small molecule biosynthetic process" GO:0009117 "small molecule biosynthetic process" GO:0006753 "small molecule biosynthetic process" GO:0019362 "pyridine-containing compound metabolic process" GO:0009132 "small molecule biosynthetic process" GO:0006091 "generation of precursor metabolites and energy" GO:0006163 "purine-containing compound metabolic process" GO:0019637 "organophosphate catabolic process" GO:0009259 "organophosphate catabolic process" GO:0019693 "organophosphate catabolic process" GO:0006553 "alpha-amino acid biosynthetic process" GO:0046496 "pyridine-containing compound metabolic process" GO:0009073 "small molecule biosynthetic process" GO:1901136 "purine-containing compound catabolic process" GO:0009064 "alpha-amino acid biosynthetic process" GO:0055086 "small molecule biosynthetic process" GO:0009082 "alpha-amino acid biosynthetic process" GO:0006541 "alpha-amino acid biosynthetic process" GO:0019318 "small molecule biosynthetic process" GO:0044272 "sulfur compound biosynthetic process" GO:0032787 "small molecule biosynthetic process" GO:0009309 "amine biosynthetic process" GO:0042401 "amine biosynthetic process" GO:0042430 "indole-containing compound metabolic process" GO:0006586 "indole-containing compound metabolic process" GO:0006568 "indole-containing compound metabolic process" GO:0044270 "purine-containing compound catabolic process" GO:0009081 "alpha-amino acid biosynthetic process" GO:0006743 "small molecule biosynthetic process" GO:1901661 "small molecule biosynthetic process" GO:0006744 "small molecule biosynthetic process" GO:1901663 "small molecule biosynthetic process" GO:0006790 "sulfur compound biosynthetic process" GO:0046700 "purine-containing compound catabolic process" GO:0006006 "small molecule biosynthetic process" GO:0009097 "alpha-amino acid biosynthetic process" GO:0034655 "purine-containing compound catabolic process" GO:0042592 "homeostatic process" GO:0009084 "alpha-amino acid biosynthetic process" GO:0006457 "protein folding" GO:0006446 "regulation of translational initiation" GO:0006549 "alpha-amino acid biosynthetic process" GO:0000097 "sulfur compound biosynthetic process" GO:0019725 "homeostatic process" GO:1901617 "organic hydroxy compound biosynthetic process" GO:1901361 "purine-containing compound catabolic process" GO:0009069 "alpha-amino acid biosynthetic process" GO:0019439 "purine-containing compound catabolic process" GO:0006576 "amine biosynthetic process" GO:0009072 "small molecule biosynthetic process" GO:0009070 "alpha-amino acid biosynthetic process" GO:0009086 "sulfur compound biosynthetic process" GO:0009308 "amine biosynthetic process" GO:0051604 "protein folding" GO:0006760 "folic acid-containing compound metabolic process" GO:0006555 "sulfur compound biosynthetic process" GO:0006525 "alpha-amino acid biosynthetic process" GO:0046653 "folic acid-containing compound metabolic process" GO:1990542 "mitochondrial transmembrane transport" GO:0006573 "alpha-amino acid biosynthetic process" GO:0042558 "folic acid-containing compound metabolic process" GO:0043603 "regulation of translational initiation" GO:0006417 "regulation of translational initiation" GO:0043604 "regulation of translational initiation" GO:0072522 "purine-containing compound metabolic process" GO:0000096 "sulfur compound biosynthetic process" GO:0005996 "small molecule biosynthetic process" GO:1901615 "organic hydroxy compound biosynthetic process" GO:0034248 "regulation of translational initiation" GO:0006575 "cellular modified amino acid metabolic process" GO:0048878 "homeostatic process" GO:0009165 "small molecule biosynthetic process" GO:0006839 "mitochondrial transmembrane transport" GO:0009152 "purine-containing compound metabolic process" GO:1901293 "small molecule biosynthetic process" GO:0072525 "pyridine-containing compound metabolic process" GO:0016126 "organic hydroxy compound biosynthetic process" GO:0042364 "small molecule biosynthetic process" GO:0009110 "small molecule biosynthetic process" GO:0006164 "purine-containing compound metabolic process" GO:0006767 "small molecule biosynthetic process" GO:0006766 "small molecule biosynthetic process" GO:0062197 "cellular response to chemical stress" GO:0046364 "small molecule biosynthetic process" GO:0019319 "small molecule biosynthetic process" GO:0006094 "small molecule biosynthetic process" Number of Biological process parent terms: alpha-amino acid biosynthetic process amine biosynthetic process 17 4 cellular modified amino acid metabolic process cellular response to chemical stress 1 1 folic acid-containing compound metabolic process generation of precursor metabolites and energy 3 1 homeostatic process indole-containing compound metabolic process 3 3 mitochondrial transmembrane transport organic hydroxy compound biosynthetic process 2 3 organophosphate catabolic process protein folding 9 2 purine-containing compound catabolic process purine-containing compound metabolic process 8 5 pyridine-containing compound metabolic process regulation of translational initiation 6 5 small molecule biosynthetic process sulfur compound biosynthetic process 46 6 Molecular function parent terms of GO terms are: term GO:0044183 "protein folding chaperone" GO:0016769 "transferase activity, transferring nitrogenous groups" GO:0008483 "transaminase activity" GO:0019842 "vitamin binding" GO:0016829 "lyase activity" GO:0016836 "hydro-lyase activity" GO:0016874 "ligase activity" GO:0070279 "vitamin B6 binding" GO:0030170 "pyridoxal phosphate binding" GO:0046912 "acyltransferase activity, acyl groups converted into alkyl on transfer" GO:0016407 "acetyltransferase activity" GO:0016645 "oxidoreductase activity, acting on the CH-NH group of donors" GO:0000287 "magnesium ion binding" GO:0020037 "heme binding" GO:0016835 "carbon-oxygen lyase activity" parentTerm GO:0044183 "protein folding chaperone" GO:0016769 "transferase activity, transferring nitrogenous groups" GO:0008483 "transferase activity, transferring nitrogenous groups" GO:0019842 "vitamin binding" GO:0016829 "lyase activity" GO:0016836 "lyase activity" GO:0016874 "ligase activity" GO:0070279 "vitamin binding" GO:0030170 "vitamin binding" GO:0046912 "acyltransferase activity, acyl groups converted into alkyl on transfer" GO:0016407 "acyltransferase activity, acyl groups converted into alkyl on transfer" GO:0016645 "oxidoreductase activity, acting on the CH-NH group of donors" GO:0000287 "magnesium ion binding" GO:0020037 "heme binding" GO:0016835 "lyase activity" Number of Molecular function parent terms: acyltransferase activity, acyl groups converted into alkyl on transfer 2 heme binding 1 ligase activity 1 lyase activity 3 magnesium ion binding 1 oxidoreductase activity, acting on the CH-NH group of donors 1 protein folding chaperone 1 transferase activity, transferring nitrogenous groups 2 vitamin binding 3 Cellular component parent terms of GO terms are: term parentTerm GO:0005739 "mitochondrion" "mitochondrion" GO:0005740 "mitochondrial envelope" "mitochondrial envelope" GO:0031966 "mitochondrial membrane" "mitochondrial envelope" GO:0031975 "envelope" "mitochondrial envelope" GO:0031967 "organelle envelope" "mitochondrial envelope" GO:0005759 "mitochondrial matrix" "mitochondrion" GO:0005743 "mitochondrial inner membrane" "mitochondrial envelope" GO:0019866 "organelle inner membrane" "mitochondrial envelope" GO:0042645 "mitochondrial nucleoid" "mitochondrial nucleoid" GO:0009295 "nucleoid" "mitochondrial nucleoid" Number of Cellular component parent terms: mitochondrial envelope mitochondrial nucleoid mitochondrion 6 2 2 Number of GO terms for which NO parent term was found: 5 No parent term was found for the following GO terms: [1] "L-amino acid biosynthetic process" "proteinogenic amino acid biosynthetic process" [3] "proteinogenic amino acid metabolic process" "L-amino acid metabolic process" [5] "ATP-dependent protein folding chaperone" -------------------------------------------------------------- Number of enriched KEGG pathways: 8 KEGG pathways are: [1] "Biosynthesis of amino acids - Aspergillus oryzae" [2] "2-Oxocarboxylic acid metabolism - Aspergillus oryzae" [3] "Carbon metabolism - Aspergillus oryzae" [4] "Glycolysis / Gluconeogenesis - Aspergillus oryzae" [5] "Phenylalanine, tyrosine and tryptophan biosynthesis - Aspergillus oryzae" [6] "Lysine biosynthesis - Aspergillus oryzae" [7] "Citrate cycle (TCA cycle) - Aspergillus oryzae" [8] "Biosynthesis of cofactors - Aspergillus oryzae" ######################################################################################################################## Cluster number 15 Number of genes in cluster 15 is: 399 Genes in cluster 15 are: [1] "AO090001000031" "AO090001000147" "AO090001000174" "AO090001000279" "AO090001000280" "AO090001000281" [7] "AO090001000301" "AO090001000406" "AO090001000427" "AO090001000428" "AO090001000430" "AO090001000448" [13] "AO090001000458" "AO090001000459" "AO090001000482" "AO090001000543" "AO090001000552" "AO090001000569" [19] "AO090001000570" "AO090001000597" "AO090001000615" "AO090001000653" "AO090001000659" "AO090001000667" [25] "AO090001000668" "AO090001000749" "AO090003000009" "AO090003000036" "AO090003000096" "AO090003000101" [31] "AO090003000132" "AO090003000167" "AO090003000197" "AO090003000253" "AO090003000269" "AO090003000282" [37] "AO090003000296" "AO090003000314" "AO090003000450" "AO090003000462" "AO090003000478" "AO090003000485" [43] "AO090003000509" "AO090003000552" "AO090003000575" "AO090003000581" "AO090003000611" "AO090003000640" [49] "AO090003000641" "AO090003000663" "AO090003000665" "AO090003000776" "AO090003000798" "AO090003000804" [55] "AO090003000811" "AO090003000828" "AO090003000846" "AO090003000855" "AO090003000892" "AO090003000904" [61] "AO090003000912" "AO090003000924" "AO090003000927" "AO090003000938" "AO090003000995" "AO090003000997" [67] "AO090003001023" "AO090003001050" "AO090003001070" "AO090003001155" "AO090003001174" "AO090003001175" [73] "AO090003001194" "AO090003001236" "AO090003001253" "AO090003001254" "AO090003001314" "AO090003001339" [79] "AO090003001348" "AO090003001357" "AO090003001358" "AO090003001359" "AO090003001360" "AO090005000008" [85] "AO090005000104" "AO090005000107" "AO090005000129" "AO090005000160" "AO090005000260" "AO090005000347" [91] "AO090005000352" "AO090005000353" "AO090005000354" "AO090005000419" "AO090005000429" "AO090005000432" [97] "AO090005000465" "AO090005000543" "AO090005000605" "AO090005000674" "AO090005000690" "AO090005000759" [103] "AO090005000780" "AO090005000824" "AO090005000831" "AO090005000833" "AO090005000835" "AO090005000878" [109] "AO090005000896" "AO090005000919" "AO090005001057" "AO090005001071" "AO090005001072" "AO090005001076" [115] "AO090005001158" "AO090005001185" "AO090005001231" "AO090005001297" "AO090005001304" "AO090005001305" [121] "AO090005001362" "AO090005001392" "AO090005001438" "AO090005001462" "AO090005001519" "AO090005001591" [127] "AO090005001611" "AO090009000001" "AO090009000235" "AO090009000242" "AO090009000261" "AO090009000302" [133] "AO090009000346" "AO090009000363" "AO090009000372" "AO090009000402" "AO090009000422" "AO090009000423" [139] "AO090009000430" "AO090009000440" "AO090009000506" "AO090009000522" "AO090009000567" "AO090009000619" [145] "AO090009000640" "AO090009000641" "AO090009000673" "AO090009000681" "AO090009000686" "AO090009000702" [151] "AO090010000193" "AO090010000227" "AO090010000253" "AO090010000280" "AO090010000474" "AO090010000543" [157] "AO090010000544" "AO090010t00014" "AO090011000062" "AO090011000116" "AO090011000162" "AO090011000172" [163] "AO090011000231" "AO090011000289" "AO090011000421" "AO090011000424" "AO090011000468" "AO090011000492" [169] "AO090011000497" "AO090011000518" "AO090011000599" "AO090011000635" "AO090011000771" "AO090011000788" [175] "AO090011000829" "AO090011000860" "AO090011000872" "AO090012000186" "AO090012000197" "AO090012000201" [181] "AO090012000203" "AO090012000270" "AO090012000273" "AO090012000351" "AO090012000410" "AO090012000426" [187] "AO090012000443" "AO090012000486" "AO090012000488" "AO090012000566" "AO090012000567" "AO090012000574" [193] "AO090012000583" "AO090012000634" "AO090012000662" "AO090012000678" "AO090012000689" "AO090012000690" [199] "AO090012000790" "AO090012000791" "AO090012000805" "AO090012000807" "AO090012000855" "AO090012000884" [205] "AO090012000932" "AO090012000934" "AO090012000940" "AO090012000959" "AO090012000966" "AO090020000020" [211] "AO090020000055" "AO090020000110" "AO090020000118" "AO090020000128" "AO090020000174" "AO090020000175" [217] "AO090020000205" "AO090020000342" "AO090020000355" "AO090020000410" "AO090020000418" "AO090020000420" [223] "AO090020000578" "AO090020000591" "AO090020000601" "AO090020000626" "AO090023000031" "AO090023000105" [229] "AO090023000107" "AO090023000134" "AO090023000179" "AO090023000223" "AO090023000229" "AO090023000245" [235] "AO090023000272" "AO090023000315" "AO090023000426" "AO090023000504" "AO090023000510" "AO090023000511" [241] "AO090023000562" "AO090023000574" "AO090023000609" "AO090023000641" "AO090023000752" "AO090023000785" [247] "AO090023000812" "AO090023000818" "AO090023000821" "AO090023000825" "AO090023000834" "AO090023000836" [253] "AO090023000850" "AO090023000851" "AO090023000861" "AO090023000865" "AO090023000897" "AO090023000955" [259] "AO090023000958" "AO090023000965" "AO090023001001" "AO090026000056" "AO090026000077" "AO090026000130" [265] "AO090026000136" "AO090026000163" "AO090026000228" "AO090026000256" "AO090026000270" "AO090026000298" [271] "AO090026000299" "AO090026000345" "AO090026000348" "AO090026000362" "AO090026000422" "AO090026000431" [277] "AO090026000455" "AO090026000462" "AO090026000495" "AO090026000521" "AO090026000524" "AO090026000535" [283] "AO090026000545" "AO090026000552" "AO090026000612" "AO090026000636" "AO090026000650" "AO090026000662" [289] "AO090026000664" "AO090026000676" "AO090026000711" "AO090026000744" "AO090038000076" "AO090038000161" [295] "AO090038000162" "AO090038000291" "AO090038000305" "AO090038000317" "AO090038000324" "AO090038000325" [301] "AO090038000341" "AO090038000347" "AO090038000368" "AO090038000383" "AO090038000387" "AO090038000405" [307] "AO090038000406" "AO090038000413" "AO090038000461" "AO090038000466" "AO090038000563" "AO090038000573" [313] "AO090038000583" "AO090038000585" "AO090038000597" "AO090038t00003" "AO090102000035" "AO090102000043" [319] "AO090102000099" "AO090102000114" "AO090102000115" "AO090102000145" "AO090102000149" "AO090102000223" [325] "AO090102000233" "AO090102000358" "AO090102000393" "AO090102000485" "AO090102000492" "AO090102000512" [331] "AO090102000518" "AO090102000546" "AO090102000549" "AO090102000594" "AO090102000624" "AO090103000037" [337] "AO090103000050" "AO090103000052" "AO090103000054" "AO090103000218" "AO090103000244" "AO090103000352" [343] "AO090103000410" "AO090103000434" "AO090113000085" "AO090113000114" "AO090113000120" "AO090120000079" [349] "AO090120000101" "AO090120000212" "AO090120000217" "AO090120000283" "AO090120000285" "AO090120000326" [355] "AO090120000346" "AO090120000348" "AO090120000405" "AO090120000421" "AO090120000422" "AO090120000428" [361] "AO090120000437" "AO090120000495" "AO090124000039" "AO090124000082" "AO090124000087" "AO090124000091" [367] "AO090138000018" "AO090166000062" "AO090166000088" "AO090166000107" "AO090206000012" "AO090206000014" [373] "AO090206000030" "AO090206000050" "AO090308000016" "AO090311000002" "AO090672000008" "AO090672000009" [379] "AO090701000018" "AO090701000034" "AO090701000084" "AO090701000087" "AO090701000089" "AO090701000118" [385] "AO090701000122" "AO090701000145" "AO090701000173" "AO090701000183" "AO090701000189" "AO090701000191" [391] "AO090701000228" "AO090701000532" "AO090701000533" "AO090701000566" "AO090701000621" "AO090701000681" [397] "AO090701000703" "AO090701000728" "AO090701000764" -------------------------------------------------------------- Number of enriched GO terms: 136 GO terms are: [1] "ncRNA processing" [2] "ncRNA metabolic process" [3] "rRNA metabolic process" [4] "nucleolus" [5] "rRNA processing" [6] "ribosome biogenesis" [7] "ribonucleoprotein complex biogenesis" [8] "RNA processing" [9] "nuclear lumen" [10] "preribosome" [11] "membrane-enclosed lumen" [12] "organelle lumen" [13] "intracellular organelle lumen" [14] "cellular component biogenesis" [15] "small-subunit processome" [16] "ribonucleoprotein complex" [17] "ribosomal small subunit biogenesis" [18] "ribosomal large subunit biogenesis" [19] "preribosome, large subunit precursor" [20] "maturation of SSU-rRNA" [21] "maturation of 5.8S rRNA" [22] "maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" [23] "maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" [24] "catalytic activity, acting on RNA" [25] "maturation of LSU-rRNA" [26] "RNA binding" [27] "maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" [28] "catalytic activity, acting on a nucleic acid" [29] "90S preribosome" [30] "RNA modification" [31] "macromolecule methylation" [32] "nuclear protein-containing complex" [33] "RNA methylation" [34] "endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" [35] "tRNA modification" [36] "rRNA 5'-end processing" [37] "tRNA methylation" [38] "RNA 5'-end processing" [39] "ncRNA 5'-end processing" [40] "tRNA processing" [41] "EC:2.7.7.6" [42] "DNA-directed 5'-3' RNA polymerase activity" [43] "EC:3.6.4.13" [44] "RNA helicase activity" [45] "tRNA metabolic process" [46] "endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" [47] "ribosomal large subunit assembly" [48] "5'-3' RNA polymerase activity" [49] "RNA polymerase activity" [50] "endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" [51] "ATP-dependent activity, acting on RNA" [52] "ribosome assembly" [53] "endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" [54] "protein-RNA complex organization" [55] "nucleocytoplasmic transport" [56] "nuclear transport" [57] "snoRNA binding" [58] "methylation" [59] "nuclear envelope" [60] "RNA methyltransferase activity" [61] "protein-RNA complex assembly" [62] "DNA-directed RNA polymerase complex" [63] "RNA polymerase III complex" [64] "RNA polymerase complex" [65] "nuclear pore" [66] "S-adenosylmethionine-dependent methyltransferase activity" [67] "preribosome, small subunit precursor" [68] "mRNA transport" [69] "nuclear export" [70] "helicase activity" [71] "non-membrane-bounded organelle assembly" [72] "nucleic acid transport" [73] "RNA transport" [74] "establishment of RNA localization" [75] "transferase complex, transferring phosphorus-containing groups" [76] "methyltransferase activity" [77] "RNA localization" [78] "catalytic complex" [79] "transferase complex" [80] "nucleobase-containing compound transport" [81] "transferase activity, transferring one-carbon groups" [82] "exoribonuclease complex" [83] "organelle assembly" [84] "rRNA binding" [85] "nucleotidyltransferase activity" [86] "structural constituent of nuclear pore" [87] "ribosomal subunit export from nucleus" [88] "ribosome localization" [89] "nuclear DNA-directed RNA polymerase complex" [90] "methyltransferase complex" [91] "ribonucleoprotein complex binding" [92] "macromolecule modification" [93] "mRNA export from nucleus" [94] "exosome (RNase complex)" [95] "tRNA methyltransferase activity" [96] "intracellular transport" [97] "DNA-templated transcription termination" [98] "transcription by RNA polymerase III" [99] "RNA export from nucleus" [100] "endomembrane system" [101] "protein-containing complex localization" [102] "establishment of localization in cell" [103] "transcription initiation at RNA polymerase III promoter" [104] "pyrophosphatase activity" [105] "EC:3.6.1.15" [106] "ribonucleoside triphosphate phosphatase activity" [107] "hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides" [108] "hydrolase activity, acting on acid anhydrides" [109] "ATP hydrolysis activity" [110] "rRNA modification" [111] "ATP-dependent activity" [112] "catalytic activity, acting on a rRNA" [113] "transcription by RNA polymerase I" [114] "nuclear membrane" [115] "establishment of organelle localization" [116] "organelle envelope" [117] "envelope" [118] "GO:0030529" [119] "protein-containing complex organization" [120] "protein-containing complex assembly" [121] "steroid biosynthetic process" [122] "DNA replication" [123] "intracellular protein-containing complex" [124] "EC:2.1.1" [125] "protein-containing complex binding" [126] "rRNA methylation" [127] "DNA-templated transcription initiation" [128] "sterol biosynthetic process" [129] "organelle organization" [130] "nucleoplasm" [131] "ncRNA transcription" [132] "ribosome binding" [133] "steroid metabolic process" [134] "cellular localization" [135] "sterol metabolic process" [136] "identical protein binding" Parent terms retrieved using org.Sc.sgd.db (S. cerevisiae) Biological process parent terms of GO terms are: term GO:0034470 "ncRNA processing" GO:0034660 "ncRNA metabolic process" GO:0016072 "rRNA metabolic process" GO:0006364 "rRNA processing" GO:0042254 "ribosome biogenesis" GO:0022613 "ribonucleoprotein complex biogenesis" GO:0006396 "RNA processing" GO:0044085 "cellular component biogenesis" GO:0042274 "ribosomal small subunit biogenesis" GO:0042273 "ribosomal large subunit biogenesis" GO:0030490 "maturation of SSU-rRNA" GO:0000466 "maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" GO:0000460 "maturation of 5.8S rRNA" GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" GO:0000470 "maturation of LSU-rRNA" GO:0000463 "maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" GO:0009451 "RNA modification" GO:0043414 "macromolecule methylation" GO:0001510 "RNA methylation" GO:0000479 "endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" GO:0006400 "tRNA modification" GO:0030488 "tRNA methylation" GO:0000967 "rRNA 5'-end processing" GO:0000966 "RNA 5'-end processing" GO:0034471 "ncRNA 5'-end processing" GO:0008033 "tRNA processing" GO:0006399 "tRNA metabolic process" GO:0000480 "endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" GO:0000027 "ribosomal large subunit assembly" GO:0000472 "endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" GO:0042255 "ribosome assembly" GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" GO:0071826 "protein-RNA complex organization" GO:0051169 "nuclear transport" GO:0006913 "nucleocytoplasmic transport" GO:0032259 "methylation" GO:0022618 "protein-RNA complex assembly" GO:0051028 "mRNA transport" GO:0051168 "nuclear export" GO:0050658 "RNA transport" GO:0050657 "nucleic acid transport" GO:0051236 "establishment of RNA localization" GO:0006403 "RNA localization" GO:0015931 "nucleobase-containing compound transport" GO:0070925 "organelle assembly" GO:0033750 "ribosome localization" GO:0000054 "ribosomal subunit export from nucleus" GO:0043412 "macromolecule modification" GO:0006406 "mRNA export from nucleus" GO:0046907 "intracellular transport" GO:0006353 "DNA-templated transcription termination" GO:0006383 "transcription by RNA polymerase III" GO:0006405 "RNA export from nucleus" GO:0031503 "protein-containing complex localization" GO:0051649 "establishment of localization in cell" GO:0006384 "transcription initiation at RNA polymerase III promoter" GO:0000154 "rRNA modification" GO:0006360 "transcription by RNA polymerase I" GO:0051656 "establishment of organelle localization" GO:0043933 "protein-containing complex organization" GO:0065003 "protein-containing complex assembly" GO:0006694 "steroid biosynthetic process" GO:0006260 "DNA replication" GO:0031167 "rRNA methylation" GO:0006352 "DNA-templated transcription initiation" GO:0016126 "sterol biosynthetic process" GO:0006996 "organelle organization" GO:0098781 "ncRNA transcription" GO:0008202 "steroid metabolic process" GO:0051641 "cellular localization" GO:0016125 "sterol metabolic process" parentTerm GO:0034470 "ncRNA processing" GO:0034660 "ncRNA processing" GO:0016072 "ncRNA processing" GO:0006364 "ncRNA processing" GO:0042254 "ribosome biogenesis" GO:0022613 "ribosome biogenesis" GO:0006396 "RNA processing" GO:0044085 "ribosome biogenesis" GO:0042274 "ribosome biogenesis" GO:0042273 "ribosome biogenesis" GO:0030490 "ribosome biogenesis" GO:0000466 "ribosome biogenesis" GO:0000460 "ribosome biogenesis" GO:0000462 "ribosome biogenesis" GO:0000470 "ribosome biogenesis" GO:0000463 "ribosome biogenesis" GO:0009451 "RNA modification" GO:0043414 "macromolecule methylation" GO:0001510 "macromolecule methylation" GO:0000479 "ribosome biogenesis" GO:0006400 "ncRNA processing" GO:0030488 "macromolecule methylation" GO:0000967 "RNA processing" GO:0000966 "RNA processing" GO:0034471 "RNA processing" GO:0008033 "ncRNA processing" GO:0006399 "ncRNA processing" GO:0000480 "ribosome biogenesis" GO:0000027 "ribosomal large subunit assembly" GO:0000472 "RNA processing" GO:0042255 "ribosomal large subunit assembly" GO:0000447 "ribosome biogenesis" GO:0071826 "protein-RNA complex organization" GO:0051169 "nuclear transport" GO:0006913 "nuclear transport" GO:0032259 "macromolecule methylation" GO:0022618 "protein-RNA complex organization" GO:0051028 "nuclear transport" GO:0051168 "nuclear transport" GO:0050658 "nuclear transport" GO:0050657 "nuclear transport" GO:0051236 "establishment of RNA localization" GO:0006403 "establishment of RNA localization" GO:0015931 "nuclear transport" GO:0070925 "ribosomal large subunit assembly" GO:0033750 "ribosome localization" GO:0000054 "ribosome localization" GO:0043412 "RNA modification" GO:0006406 "establishment of RNA localization" GO:0046907 "nuclear transport" GO:0006353 "DNA-templated transcription termination" GO:0006383 "DNA-templated transcription termination" GO:0006405 "establishment of RNA localization" GO:0031503 "protein-containing complex localization" GO:0051649 "nuclear transport" GO:0006384 "DNA-templated transcription termination" GO:0000154 "RNA modification" GO:0006360 "DNA-templated transcription termination" GO:0051656 "ribosome localization" GO:0043933 "protein-RNA complex organization" GO:0065003 "protein-RNA complex organization" GO:0006694 "steroid biosynthetic process" GO:0006260 "DNA replication" GO:0031167 "RNA modification" GO:0006352 "DNA-templated transcription termination" GO:0016126 "steroid biosynthetic process" GO:0006996 "ribosomal large subunit assembly" GO:0098781 "ncRNA processing" GO:0008202 "steroid biosynthetic process" GO:0051641 "nuclear transport" GO:0016125 "steroid biosynthetic process" Number of Biological process parent terms: DNA-templated transcription termination DNA replication 5 1 establishment of RNA localization macromolecule methylation 4 4 ncRNA processing nuclear transport 8 10 protein-containing complex localization protein-RNA complex organization 1 4 ribosomal large subunit assembly ribosome biogenesis 4 14 ribosome localization RNA modification 3 4 RNA processing steroid biosynthetic process 5 4 Molecular function parent terms of GO terms are: term GO:0140098 "catalytic activity, acting on RNA" GO:0003723 "RNA binding" GO:0003899 "DNA-directed 5'-3' RNA polymerase activity" GO:0003724 "RNA helicase activity" GO:0097747 "RNA polymerase activity" GO:0034062 "5'-3' RNA polymerase activity" GO:0008186 "ATP-dependent activity, acting on RNA" GO:0030515 "snoRNA binding" GO:0008173 "RNA methyltransferase activity" GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" GO:0004386 "helicase activity" GO:0008168 "methyltransferase activity" GO:0016741 "transferase activity, transferring one-carbon groups" GO:0019843 "rRNA binding" GO:0016779 "nucleotidyltransferase activity" GO:0017056 "structural constituent of nuclear pore" GO:0043021 "ribonucleoprotein complex binding" GO:0008175 "tRNA methyltransferase activity" GO:0016462 "pyrophosphatase activity" GO:0017111 "ribonucleoside triphosphate phosphatase activity" GO:0016818 "hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides" GO:0016817 "hydrolase activity, acting on acid anhydrides" GO:0016887 "ATP hydrolysis activity" GO:0140102 "catalytic activity, acting on a rRNA" GO:0044877 "protein-containing complex binding" GO:0043022 "ribosome binding" GO:0042802 "identical protein binding" parentTerm GO:0140098 "catalytic activity, acting on RNA" GO:0003723 "RNA binding" GO:0003899 "DNA-directed 5'-3' RNA polymerase activity" GO:0003724 "RNA helicase activity" GO:0097747 "DNA-directed 5'-3' RNA polymerase activity" GO:0034062 "DNA-directed 5'-3' RNA polymerase activity" GO:0008186 "RNA helicase activity" GO:0030515 "RNA binding" GO:0008173 "RNA methyltransferase activity" GO:0008757 "RNA methyltransferase activity" GO:0004386 "helicase activity" GO:0008168 "RNA methyltransferase activity" GO:0016741 "RNA methyltransferase activity" GO:0019843 "RNA binding" GO:0016779 "DNA-directed 5'-3' RNA polymerase activity" GO:0017056 "structural constituent of nuclear pore" GO:0043021 "ribonucleoprotein complex binding" GO:0008175 "RNA methyltransferase activity" GO:0016462 "pyrophosphatase activity" GO:0017111 "pyrophosphatase activity" GO:0016818 "pyrophosphatase activity" GO:0016817 "pyrophosphatase activity" GO:0016887 "pyrophosphatase activity" GO:0140102 "catalytic activity, acting on RNA" GO:0044877 "ribonucleoprotein complex binding" GO:0043022 "ribonucleoprotein complex binding" GO:0042802 "identical protein binding" Number of Molecular function parent terms: catalytic activity, acting on RNA DNA-directed 5'-3' RNA polymerase activity 2 4 helicase activity identical protein binding 1 1 pyrophosphatase activity ribonucleoprotein complex binding 5 3 RNA binding RNA helicase activity 3 2 RNA methyltransferase activity structural constituent of nuclear pore 5 1 Cellular component parent terms of GO terms are: term GO:0005730 "nucleolus" GO:0031981 "nuclear lumen" GO:0030684 "preribosome" GO:0070013 "intracellular organelle lumen" GO:0043233 "organelle lumen" GO:0031974 "membrane-enclosed lumen" GO:0032040 "small-subunit processome" GO:1990904 "ribonucleoprotein complex" GO:0030687 "preribosome, large subunit precursor" GO:0030686 "90S preribosome" GO:0140513 "nuclear protein-containing complex" GO:0005635 "nuclear envelope" GO:0000428 "DNA-directed RNA polymerase complex" GO:0005666 "RNA polymerase III complex" GO:0030880 "RNA polymerase complex" GO:0005643 "nuclear pore" GO:0030688 "preribosome, small subunit precursor" GO:0061695 "transferase complex, transferring phosphorus-containing groups" GO:1902494 "catalytic complex" GO:1990234 "transferase complex" GO:1905354 "exoribonuclease complex" GO:0055029 "nuclear DNA-directed RNA polymerase complex" GO:0034708 "methyltransferase complex" GO:0000178 "exosome (RNase complex)" GO:0012505 "endomembrane system" GO:0031965 "nuclear membrane" GO:0031975 "envelope" GO:0031967 "organelle envelope" GO:0140535 "intracellular protein-containing complex" GO:0005654 "nucleoplasm" parentTerm GO:0005730 "nucleolus" GO:0031981 "nucleolus" GO:0030684 "preribosome" GO:0070013 "nucleolus" GO:0043233 "nucleolus" GO:0031974 "nucleolus" GO:0032040 "preribosome" GO:1990904 "preribosome" GO:0030687 "preribosome" GO:0030686 "preribosome" GO:0140513 "nuclear protein-containing complex" GO:0005635 "nuclear envelope" GO:0000428 "DNA-directed RNA polymerase complex" GO:0005666 "DNA-directed RNA polymerase complex" GO:0030880 "DNA-directed RNA polymerase complex" GO:0005643 "nuclear envelope" GO:0030688 "preribosome" GO:0061695 "DNA-directed RNA polymerase complex" GO:1902494 "DNA-directed RNA polymerase complex" GO:1990234 "DNA-directed RNA polymerase complex" GO:1905354 "DNA-directed RNA polymerase complex" GO:0055029 "DNA-directed RNA polymerase complex" GO:0034708 "DNA-directed RNA polymerase complex" GO:0000178 "DNA-directed RNA polymerase complex" GO:0012505 "endomembrane system" GO:0031965 "nuclear envelope" GO:0031975 "nuclear envelope" GO:0031967 "nuclear envelope" GO:0140535 "nuclear protein-containing complex" GO:0005654 "nucleolus" Number of Cellular component parent terms: DNA-directed RNA polymerase complex endomembrane system nuclear envelope 10 1 5 nuclear protein-containing complex nucleolus preribosome 2 6 6 Number of GO terms for which NO parent term was found: 8 No parent term was found for the following GO terms: [1] "catalytic activity, acting on a nucleic acid" "EC:2.7.7.6" [3] "EC:3.6.4.13" "non-membrane-bounded organelle assembly" [5] "EC:3.6.1.15" "ATP-dependent activity" [7] "GO:0030529" "EC:2.1.1" -------------------------------------------------------------- Number of enriched KEGG pathways: 4 KEGG pathways are: [1] "Ribosome biogenesis in eukaryotes - Aspergillus oryzae" [2] "RNA polymerase - Aspergillus oryzae" [3] "Nucleocytoplasmic transport - Aspergillus oryzae" [4] "DNA replication - Aspergillus oryzae" ######################################################################################################################## Cluster number 16 Number of genes in cluster 16 is: 456 Genes in cluster 16 are: [1] "AO090001000030" "AO090001000169" "AO090001000196" "AO090001000218" "AO090001000232" "AO090001000240" [7] "AO090001000300" "AO090001000312" "AO090001000327" "AO090001000330" "AO090001000413" "AO090001000418" [13] "AO090001000454" "AO090001000455" "AO090001000484" "AO090001000485" "AO090001000498" "AO090001000519" [19] "AO090001000520" "AO090001000524" "AO090001000553" "AO090001000559" "AO090001000571" "AO090001000583" [25] "AO090001000617" "AO090001000660" "AO090001000666" "AO090001000680" "AO090001000705" "AO090001000712" [31] "AO090001t00009" "AO090003000014" "AO090003000081" "AO090003000106" "AO090003000176" "AO090003000186" [37] "AO090003000198" "AO090003000215" "AO090003000257" "AO090003000270" "AO090003000294" "AO090003000315" [43] "AO090003000329" "AO090003000361" "AO090003000367" "AO090003000383" "AO090003000400" "AO090003000418" [49] "AO090003000422" "AO090003000431" "AO090003000466" "AO090003000513" "AO090003000514" "AO090003000547" [55] "AO090003000570" "AO090003000571" "AO090003000608" "AO090003000618" "AO090003000634" "AO090003000636" [61] "AO090003000645" "AO090003000679" "AO090003000688" "AO090003000689" "AO090003000690" "AO090003000750" [67] "AO090003000805" "AO090003000814" "AO090003000816" "AO090003000872" "AO090003000895" "AO090003000917" [73] "AO090003000947" "AO090003000979" "AO090003000993" "AO090003001010" "AO090003001024" "AO090003001065" [79] "AO090003001082" "AO090003001103" "AO090003001104" "AO090003001106" "AO090003001115" "AO090003001132" [85] "AO090003001133" "AO090003001150" "AO090003001234" "AO090003001255" "AO090003001350" "AO090003001393" [91] "AO090003001402" "AO090003001500" "AO090005000074" "AO090005000086" "AO090005000141" "AO090005000265" [97] "AO090005000269" "AO090005000274" "AO090005000276" "AO090005000305" "AO090005000315" "AO090005000372" [103] "AO090005000408" "AO090005000409" "AO090005000411" "AO090005000428" "AO090005000445" "AO090005000531" [109] "AO090005000572" "AO090005000582" "AO090005000616" "AO090005000648" "AO090005000667" "AO090005000668" [115] "AO090005000691" "AO090005000697" "AO090005000719" "AO090005000737" "AO090005000761" "AO090005000840" [121] "AO090005000886" "AO090005000888" "AO090005000892" "AO090005000967" "AO090005000996" "AO090005001009" [127] "AO090005001018" "AO090005001021" "AO090005001059" "AO090005001077" "AO090005001116" "AO090005001122" [133] "AO090005001124" "AO090005001132" "AO090005001148" "AO090005001150" "AO090005001220" "AO090005001224" [139] "AO090005001225" "AO090005001258" "AO090005001275" "AO090005001291" "AO090005001311" "AO090005001354" [145] "AO090005001391" "AO090005001406" "AO090005001412" "AO090005001434" "AO090005001441" "AO090005001460" [151] "AO090005001461" "AO090005001467" "AO090005001471" "AO090005001509" "AO090005001561" "AO090005001567" [157] "AO090005001568" "AO090005001579" "AO090005001587" "AO090005001590" "AO090005001594" "AO090005001601" [163] "AO090005001627" "AO090005001631" "AO090009000138" "AO090009000202" "AO090009000232" "AO090009000255" [169] "AO090009000264" "AO090009000333" "AO090009000362" "AO090009000377" "AO090009000395" "AO090009000405" [175] "AO090009000412" "AO090009000485" "AO090009000519" "AO090009000594" "AO090009000609" "AO090009000629" [181] "AO090009000643" "AO090009000678" "AO090009000679" "AO090009000691" "AO090009000698" "AO090009000705" [187] "AO090009000711" "AO090009000715" "AO090010000223" "AO090010000224" "AO090010000290" "AO090010000292" [193] "AO090010000333" "AO090010000344" "AO090010000346" "AO090010000351" "AO090010000441" "AO090010000475" [199] "AO090010000481" "AO090010000714" "AO090011000049" "AO090011000109" "AO090011000152" "AO090011000186" [205] "AO090011000267" "AO090011000292" "AO090011000338" "AO090011000340" "AO090011000367" "AO090011000450" [211] "AO090011000490" "AO090011000499" "AO090011000513" "AO090011000577" "AO090011000578" "AO090011000590" [217] "AO090011000596" "AO090011000626" "AO090011000630" "AO090011000648" "AO090011000666" "AO090011000719" [223] "AO090011000751" "AO090011000775" "AO090011000777" "AO090011000782" "AO090011000791" "AO090011000812" [229] "AO090011000862" "AO090011000868" "AO090011000901" "AO090011000952" "AO090011000954" "AO090012000071" [235] "AO090012000271" "AO090012000334" "AO090012000396" "AO090012000402" "AO090012000422" "AO090012000433" [241] "AO090012000434" "AO090012000436" "AO090012000444" "AO090012000475" "AO090012000502" "AO090012000528" [247] "AO090012000556" "AO090012000613" "AO090012000636" "AO090012000641" "AO090012000647" "AO090012000651" [253] "AO090012000653" "AO090012000661" "AO090012000783" "AO090012000796" "AO090012000798" "AO090012000801" [259] "AO090012000814" "AO090012000915" "AO090012000929" "AO090012000931" "AO090012000938" "AO090012000948" [265] "AO090012000996" "AO090012001004" "AO090012001015" "AO090020000013" "AO090020000032" "AO090020000053" [271] "AO090020000297" "AO090020000298" "AO090020000299" "AO090020000313" "AO090020000347" "AO090020000349" [277] "AO090020000411" "AO090020000468" "AO090020000491" "AO090020000539" "AO090020000575" "AO090020000583" [283] "AO090020000599" "AO090020000604" "AO090020000665" "AO090020000686" "AO090023000025" "AO090023000058" [289] "AO090023000078" "AO090023000108" "AO090023000116" "AO090023000123" "AO090023000127" "AO090023000307" [295] "AO090023000395" "AO090023000483" "AO090023000509" "AO090023000632" "AO090023000640" "AO090023000649" [301] "AO090023000702" "AO090023000728" "AO090023000756" "AO090023000758" "AO090023000771" "AO090023000798" [307] "AO090023000806" "AO090023000809" "AO090023000830" "AO090023000837" "AO090023000841" "AO090023000843" [313] "AO090023000844" "AO090023000854" "AO090023000856" "AO090023000859" "AO090023001008" "AO090026000135" [319] "AO090026000138" "AO090026000140" "AO090026000141" "AO090026000229" "AO090026000260" "AO090026000264" [325] "AO090026000269" "AO090026000346" "AO090026000428" "AO090026000458" "AO090026000503" "AO090026000510" [331] "AO090026000542" "AO090026000543" "AO090026000599" "AO090026000606" "AO090026000616" "AO090026000656" [337] "AO090026000663" "AO090026000677" "AO090026000700" "AO090026000732" "AO090026000766" "AO090026000794" [343] "AO090026000811" "AO090026000815" "AO090026000816" "AO090038000066" "AO090038000067" "AO090038000110" [349] "AO090038000134" "AO090038000249" "AO090038000254" "AO090038000284" "AO090038000285" "AO090038000287" [355] "AO090038000295" "AO090038000308" "AO090038000357" "AO090038000382" "AO090038000399" "AO090038000435" [361] "AO090038000451" "AO090038000455" "AO090038000592" "AO090038000596" "AO090038000606" "AO090102000117" [367] "AO090102000121" "AO090102000150" "AO090102000153" "AO090102000181" "AO090102000222" "AO090102000226" [373] "AO090102000227" "AO090102000276" "AO090102000291" "AO090102000317" "AO090102000335" "AO090102000353" [379] "AO090102000377" "AO090102000378" "AO090102000476" "AO090102000477" "AO090102000488" "AO090102000502" [385] "AO090102000556" "AO090102000558" "AO090102000567" "AO090102000573" "AO090102000577" "AO090102000595" [391] "AO090102000606" "AO090102000625" "AO090102000645" "AO090103000007" "AO090103000065" "AO090103000216" [397] "AO090103000331" "AO090103000340" "AO090103000348" "AO090103000384" "AO090103000479" "AO090113000004" [403] "AO090113000153" "AO090113000154" "AO090120000080" "AO090120000110" "AO090120000131" "AO090120000132" [409] "AO090120000169" "AO090120000224" "AO090120000249" "AO090120000261" "AO090120000291" "AO090120000333" [415] "AO090120000339" "AO090120000344" "AO090120000410" "AO090120000411" "AO090120000412" "AO090120000413" [421] "AO090120000497" "AO090120000500" "AO090124000075" "AO090138000033" "AO090166000077" "AO090206000001" [427] "AO090206000027" "AO090206000037" "AO090206000047" "AO090206000110" "AO090672000005" "AO090701000014" [433] "AO090701000022" "AO090701000026" "AO090701000047" "AO090701000066" "AO090701000067" "AO090701000070" [439] "AO090701000082" "AO090701000090" "AO090701000096" "AO090701000167" "AO090701000221" "AO090701000222" [445] "AO090701000255" "AO090701000265" "AO090701000282" "AO090701000359" "AO090701000412" "AO090701000543" [451] "AO090701000684" "AO090701000685" "AO090701000686" "AO090701000730" "AO090701000761" "AO090701000811" -------------------------------------------------------------- Number of enriched GO terms: 215 GO terms are: [1] "translation" [2] "peptide biosynthetic process" [3] "peptide metabolic process" [4] "amide biosynthetic process" [5] "ribosome" [6] "structural constituent of ribosome" [7] "ribonucleoprotein complex" [8] "amide metabolic process" [9] "structural molecule activity" [10] "ribonucleoprotein complex biogenesis" [11] "RNA binding" [12] "ribosomal subunit" [13] "ribosome biogenesis" [14] "cellular component biogenesis" [15] "cytosolic ribosome" [16] "RNA processing" [17] "large ribosomal subunit" [18] "rRNA processing" [19] "cytoplasmic translation" [20] "cytosol" [21] "rRNA metabolic process" [22] "mitochondrion" [23] "ncRNA metabolic process" [24] "ncRNA processing" [25] "small ribosomal subunit" [26] "translation regulator activity" [27] "translation factor activity, RNA binding" [28] "translation regulator activity, nucleic acid binding" [29] "cytosolic small ribosomal subunit" [30] "protein-RNA complex assembly" [31] "eukaryotic translation initiation factor 3 complex" [32] "protein-RNA complex organization" [33] "eukaryotic 48S preinitiation complex" [34] "cytoplasmic translational initiation" [35] "nucleolus" [36] "translation preinitiation complex" [37] "organelle inner membrane" [38] "formation of cytoplasmic translation initiation complex" [39] "membrane-enclosed lumen" [40] "organelle lumen" [41] "intracellular organelle lumen" [42] "nucleotide biosynthetic process" [43] "electron transport chain" [44] "mitochondrial inner membrane" [45] "organelle envelope" [46] "envelope" [47] "nucleoside phosphate biosynthetic process" [48] "mitochondrial envelope" [49] "mitochondrial membrane" [50] "eukaryotic 43S preinitiation complex" [51] "translation initiation factor activity" [52] "translational initiation" [53] "ribose phosphate biosynthetic process" [54] "mitochondrial protein-containing complex" [55] "nucleoside monophosphate metabolic process" [56] "translational elongation" [57] "respiratory electron transport chain" [58] "ribonucleoside monophosphate metabolic process" [59] "cytosolic large ribosomal subunit" [60] "ribonucleotide biosynthetic process" [61] "ribosomal small subunit biogenesis" [62] "ribonucleoside monophosphate biosynthetic process" [63] "oxidoreduction-driven active transmembrane transporter activity" [64] "ATP synthesis coupled electron transport" [65] "nucleoside monophosphate biosynthetic process" [66] "maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" [67] "oxidative phosphorylation" [68] "amino acid biosynthetic process" [69] "rRNA binding" [70] "amino acid metabolic process" [71] "maturation of SSU-rRNA" [72] "respirasome" [73] "aerobic electron transport chain" [74] "mitochondrial ATP synthesis coupled electron transport" [75] "nucleobase biosynthetic process" [76] "nuclear lumen" [77] "inner mitochondrial membrane protein complex" [78] "organophosphate biosynthetic process" [79] "ribose phosphate metabolic process" [80] "purine-containing compound biosynthetic process" [81] "nucleotide metabolic process" [82] "nucleoside phosphate metabolic process" [83] "respiratory chain complex" [84] "cellular localization" [85] "cellular respiration" [86] "small molecule biosynthetic process" [87] "transmembrane transporter complex" [88] "ribosomal subunit export from nucleus" [89] "purine nucleoside monophosphate metabolic process" [90] "purine ribonucleoside monophosphate metabolic process" [91] "ribosome localization" [92] "carboxylic acid biosynthetic process" [93] "purine ribonucleotide biosynthetic process" [94] "organic acid biosynthetic process" [95] "nucleobase metabolic process" [96] "pyrimidine nucleotide biosynthetic process" [97] "regulation of translational fidelity" [98] "electron transfer activity" [99] "mitochondrial respirasome" [100] "pyrimidine-containing compound biosynthetic process" [101] "pyrimidine nucleotide metabolic process" [102] "generation of precursor metabolites and energy" [103] "nucleobase-containing small molecule metabolic process" [104] "ribosomal large subunit biogenesis" [105] "macromolecule localization" [106] "ribonucleotide metabolic process" [107] "purine nucleoside monophosphate biosynthetic process" [108] "purine ribonucleoside monophosphate biosynthetic process" [109] "pyrimidine-containing compound metabolic process" [110] "purine nucleotide biosynthetic process" [111] "protein-containing complex assembly" [112] "energy derivation by oxidation of organic compounds" [113] "alpha-amino acid metabolic process" [114] "protein-containing complex localization" [115] "membrane protein complex" [116] "nuclear export" [117] "transporter complex" [118] "mitochondrial matrix" [119] "aerobic respiration" [120] "alpha-amino acid biosynthetic process" [121] "RNA modification" [122] "peptidyl-amino acid modification" [123] "cellular macromolecule localization" [124] "carbohydrate derivative biosynthetic process" [125] "pyrimidine ribonucleotide metabolic process" [126] "EC:3.6.4.13" [127] "RNA helicase activity" [128] "protein maturation" [129] "nitrogen compound transport" [130] "branched-chain amino acid metabolic process" [131] "carboxylic acid metabolic process" [132] "establishment of protein localization" [133] "GO:0030529" [134] "preribosome" [135] "retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum" [136] "branched-chain amino acid biosynthetic process" [137] "maturation of 5.8S rRNA" [138] "maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" [139] "protein localization" [140] "protein-containing complex organization" [141] "translation elongation factor activity" [142] "Golgi-associated vesicle membrane" [143] "iron-sulfur cluster binding" [144] "metal cluster binding" [145] "oxoacid metabolic process" [146] "ATP-dependent activity, acting on RNA" [147] "organellar large ribosomal subunit" [148] "NADH dehydrogenase activity" [149] "mitochondrial large ribosomal subunit" [150] "organic acid metabolic process" [151] "nucleocytoplasmic transport" [152] "nuclear transport" [153] "RNA 3'-end processing" [154] "catalytic activity, acting on RNA" [155] "organophosphate metabolic process" [156] "sno(s)RNA-containing ribonucleoprotein complex" [157] "organellar ribosome" [158] "mitochondrial ribosome" [159] "cellular component assembly" [160] "establishment of organelle localization" [161] "L-amino acid metabolic process" [162] "snoRNA binding" [163] "organic substance transport" [164] "Golgi-associated vesicle" [165] "purine ribonucleotide metabolic process" [166] "purine-containing compound metabolic process" [167] "endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" [168] "vesicle coat" [169] "small-subunit processome" [170] "4 iron, 4 sulfur cluster binding" [171] "ribosome assembly" [172] "tRNA metabolic process" [173] "proteinogenic amino acid metabolic process" [174] "pseudouridine synthesis" [175] "GO:0005844" [176] "macromolecule methylation" [177] "mRNA binding" [178] "protein targeting to mitochondrion" [179] "'de novo' protein folding" [180] "valine metabolic process" [181] "ribosomal large subunit assembly" [182] "protein targeting" [183] "ligase activity, forming carbon-nitrogen bonds" [184] "intracellular transport" [185] "protein localization to mitochondrion" [186] "establishment of protein localization to mitochondrion" [187] "oxidoreductase complex" [188] "establishment of localization in cell" [189] "coated vesicle membrane" [190] "unfolded protein binding" [191] "protein transmembrane transport" [192] "isoleucine biosynthetic process" [193] "protein transporter activity" [194] "regulation of translation" [195] "organelle organization" [196] "protein transport" [197] "endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" [198] "methylation" [199] "organelle localization" [200] "isoleucine metabolic process" [201] "protein import into mitochondrial matrix" [202] "translation initiation factor binding" [203] "RNA localization" [204] "regulation of amide metabolic process" [205] "purine nucleotide metabolic process" [206] "pyrophosphatase activity" [207] "EC:3.6.1.15" [208] "ribonucleoside triphosphate phosphatase activity" [209] "L-amino acid biosynthetic process" [210] "proteinogenic amino acid biosynthetic process" [211] "dicarboxylic acid biosynthetic process" [212] "protein folding chaperone" [213] "import into the mitochondrion" [214] "hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides" [215] "sulfur compound biosynthetic process" Parent terms retrieved using org.Sc.sgd.db (S. cerevisiae) Biological process parent terms of GO terms are: term GO:0006412 "translation" GO:0043043 "peptide biosynthetic process" GO:0006518 "peptide metabolic process" GO:0043604 "amide biosynthetic process" GO:0043603 "amide metabolic process" GO:0022613 "ribonucleoprotein complex biogenesis" GO:0042254 "ribosome biogenesis" GO:0044085 "cellular component biogenesis" GO:0006396 "RNA processing" GO:0006364 "rRNA processing" GO:0002181 "cytoplasmic translation" GO:0016072 "rRNA metabolic process" GO:0034660 "ncRNA metabolic process" GO:0034470 "ncRNA processing" GO:0022618 "protein-RNA complex assembly" GO:0071826 "protein-RNA complex organization" GO:0002183 "cytoplasmic translational initiation" GO:0001732 "formation of cytoplasmic translation initiation complex" GO:0009165 "nucleotide biosynthetic process" GO:0022900 "electron transport chain" GO:1901293 "nucleoside phosphate biosynthetic process" GO:0006413 "translational initiation" GO:0046390 "ribose phosphate biosynthetic process" GO:0009123 "nucleoside monophosphate metabolic process" GO:0006414 "translational elongation" GO:0022904 "respiratory electron transport chain" GO:0009161 "ribonucleoside monophosphate metabolic process" GO:0009260 "ribonucleotide biosynthetic process" GO:0042274 "ribosomal small subunit biogenesis" GO:0009156 "ribonucleoside monophosphate biosynthetic process" GO:0042773 "ATP synthesis coupled electron transport" GO:0009124 "nucleoside monophosphate biosynthetic process" GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" GO:0006119 "oxidative phosphorylation" GO:0008652 "amino acid biosynthetic process" GO:0006520 "amino acid metabolic process" GO:0030490 "maturation of SSU-rRNA" GO:0019646 "aerobic electron transport chain" GO:0042775 "mitochondrial ATP synthesis coupled electron transport" GO:0046112 "nucleobase biosynthetic process" GO:0090407 "organophosphate biosynthetic process" GO:0019693 "ribose phosphate metabolic process" GO:0072522 "purine-containing compound biosynthetic process" GO:0009117 "nucleotide metabolic process" GO:0006753 "nucleoside phosphate metabolic process" GO:0051641 "cellular localization" GO:0045333 "cellular respiration" GO:0044283 "small molecule biosynthetic process" GO:0009126 "purine nucleoside monophosphate metabolic process" GO:0009167 "purine ribonucleoside monophosphate metabolic process" GO:0033750 "ribosome localization" GO:0000054 "ribosomal subunit export from nucleus" GO:0046394 "carboxylic acid biosynthetic process" GO:0009152 "purine ribonucleotide biosynthetic process" GO:0016053 "organic acid biosynthetic process" GO:0009112 "nucleobase metabolic process" GO:0006450 "regulation of translational fidelity" GO:0006221 "pyrimidine nucleotide biosynthetic process" GO:0072528 "pyrimidine-containing compound biosynthetic process" GO:0006220 "pyrimidine nucleotide metabolic process" GO:0042273 "ribosomal large subunit biogenesis" GO:0055086 "nucleobase-containing small molecule metabolic process" GO:0006091 "generation of precursor metabolites and energy" GO:0033036 "macromolecule localization" GO:0009259 "ribonucleotide metabolic process" GO:0009127 "purine nucleoside monophosphate biosynthetic process" GO:0009168 "purine ribonucleoside monophosphate biosynthetic process" GO:0072527 "pyrimidine-containing compound metabolic process" GO:0006164 "purine nucleotide biosynthetic process" GO:0065003 "protein-containing complex assembly" GO:1901605 "alpha-amino acid metabolic process" GO:0015980 "energy derivation by oxidation of organic compounds" GO:0031503 "protein-containing complex localization" GO:0051168 "nuclear export" GO:0009060 "aerobic respiration" GO:1901607 "alpha-amino acid biosynthetic process" GO:0009451 "RNA modification" GO:0018193 "peptidyl-amino acid modification" GO:0070727 "cellular macromolecule localization" GO:1901137 "carbohydrate derivative biosynthetic process" GO:0009218 "pyrimidine ribonucleotide metabolic process" GO:0051604 "protein maturation" GO:0071705 "nitrogen compound transport" GO:0019752 "carboxylic acid metabolic process" GO:0045184 "establishment of protein localization" GO:0009081 "branched-chain amino acid metabolic process" GO:0006890 "retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum" GO:0009082 "branched-chain amino acid biosynthetic process" GO:0000466 "maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" GO:0000460 "maturation of 5.8S rRNA" GO:0008104 "protein localization" GO:0043933 "protein-containing complex organization" GO:0043436 "oxoacid metabolic process" GO:0006082 "organic acid metabolic process" GO:0051169 "nuclear transport" GO:0006913 "nucleocytoplasmic transport" GO:0031123 "RNA 3'-end processing" GO:0019637 "organophosphate metabolic process" GO:0022607 "cellular component assembly" GO:0051656 "establishment of organelle localization" GO:0071702 "organic substance transport" GO:0009150 "purine ribonucleotide metabolic process" GO:0072521 "purine-containing compound metabolic process" GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" GO:0006399 "tRNA metabolic process" GO:0042255 "ribosome assembly" GO:0001522 "pseudouridine synthesis" GO:0043414 "macromolecule methylation" GO:0006626 "protein targeting to mitochondrion" GO:0006458 "'de novo' protein folding" GO:0006573 "valine metabolic process" GO:0000027 "ribosomal large subunit assembly" GO:0006605 "protein targeting" GO:0046907 "intracellular transport" GO:0070585 "protein localization to mitochondrion" GO:0072655 "establishment of protein localization to mitochondrion" GO:0051649 "establishment of localization in cell" GO:0071806 "protein transmembrane transport" GO:0009097 "isoleucine biosynthetic process" GO:0006417 "regulation of translation" GO:0006996 "organelle organization" GO:0015031 "protein transport" GO:0000479 "endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" GO:0032259 "methylation" GO:0051640 "organelle localization" GO:0030150 "protein import into mitochondrial matrix" GO:0006549 "isoleucine metabolic process" GO:0006403 "RNA localization" GO:0034248 "regulation of amide metabolic process" GO:0006163 "purine nucleotide metabolic process" GO:0043650 "dicarboxylic acid biosynthetic process" GO:0044272 "sulfur compound biosynthetic process" parentTerm GO:0006412 "translation" GO:0043043 "translation" GO:0006518 "translation" GO:0043604 "translation" GO:0043603 "translation" GO:0022613 "ribonucleoprotein complex biogenesis" GO:0042254 "ribonucleoprotein complex biogenesis" GO:0044085 "ribonucleoprotein complex biogenesis" GO:0006396 "RNA processing" GO:0006364 "RNA processing" GO:0002181 "translation" GO:0016072 "RNA processing" GO:0034660 "RNA processing" GO:0034470 "RNA processing" GO:0022618 "protein-RNA complex assembly" GO:0071826 "protein-RNA complex assembly" GO:0002183 "translation" GO:0001732 "translation" GO:0009165 "nucleotide biosynthetic process" GO:0022900 "electron transport chain" GO:1901293 "nucleotide biosynthetic process" GO:0006413 "translation" GO:0046390 "ribose phosphate biosynthetic process" GO:0009123 "nucleotide biosynthetic process" GO:0006414 "translation" GO:0022904 "electron transport chain" GO:0009161 "nucleotide biosynthetic process" GO:0009260 "ribose phosphate biosynthetic process" GO:0042274 "ribosomal small subunit biogenesis" GO:0009156 "nucleotide biosynthetic process" GO:0042773 "electron transport chain" GO:0009124 "nucleotide biosynthetic process" GO:0000462 "ribosomal small subunit biogenesis" GO:0006119 "electron transport chain" GO:0008652 "nucleotide biosynthetic process" GO:0006520 "amino acid metabolic process" GO:0030490 "ribosomal small subunit biogenesis" GO:0019646 "electron transport chain" GO:0042775 "electron transport chain" GO:0046112 "nucleotide biosynthetic process" GO:0090407 "organophosphate biosynthetic process" GO:0019693 "ribose phosphate biosynthetic process" GO:0072522 "purine-containing compound biosynthetic process" GO:0009117 "nucleotide biosynthetic process" GO:0006753 "nucleotide biosynthetic process" GO:0051641 "cellular localization" GO:0045333 "electron transport chain" GO:0044283 "nucleotide biosynthetic process" GO:0009126 "nucleotide biosynthetic process" GO:0009167 "nucleotide biosynthetic process" GO:0033750 "ribosome localization" GO:0000054 "ribosome localization" GO:0046394 "nucleotide biosynthetic process" GO:0009152 "ribose phosphate biosynthetic process" GO:0016053 "nucleotide biosynthetic process" GO:0009112 "nucleotide biosynthetic process" GO:0006450 "regulation of translational fidelity" GO:0006221 "pyrimidine nucleotide biosynthetic process" GO:0072528 "pyrimidine nucleotide biosynthetic process" GO:0006220 "pyrimidine nucleotide biosynthetic process" GO:0042273 "ribosomal small subunit biogenesis" GO:0055086 "nucleotide biosynthetic process" GO:0006091 "electron transport chain" GO:0033036 "macromolecule localization" GO:0009259 "ribose phosphate biosynthetic process" GO:0009127 "nucleotide biosynthetic process" GO:0009168 "nucleotide biosynthetic process" GO:0072527 "pyrimidine nucleotide biosynthetic process" GO:0006164 "purine-containing compound biosynthetic process" GO:0065003 "ribonucleoprotein complex biogenesis" GO:1901605 "amino acid metabolic process" GO:0015980 "electron transport chain" GO:0031503 "protein-containing complex localization" GO:0051168 "cellular localization" GO:0009060 "electron transport chain" GO:1901607 "amino acid metabolic process" GO:0009451 "RNA modification" GO:0018193 "RNA modification" GO:0070727 "macromolecule localization" GO:1901137 "ribose phosphate biosynthetic process" GO:0009218 "pyrimidine nucleotide biosynthetic process" GO:0051604 "protein maturation" GO:0071705 "cellular localization" GO:0019752 "nucleotide biosynthetic process" GO:0045184 "macromolecule localization" GO:0009081 "amino acid metabolic process" GO:0006890 "retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum" GO:0009082 "amino acid metabolic process" GO:0000466 "ribosomal small subunit biogenesis" GO:0000460 "ribosomal small subunit biogenesis" GO:0008104 "macromolecule localization" GO:0043933 "protein-RNA complex assembly" GO:0043436 "nucleotide biosynthetic process" GO:0006082 "nucleotide biosynthetic process" GO:0051169 "cellular localization" GO:0006913 "cellular localization" GO:0031123 "RNA processing" GO:0019637 "organophosphate biosynthetic process" GO:0022607 "ribonucleoprotein complex biogenesis" GO:0051656 "ribosome localization" GO:0071702 "cellular localization" GO:0009150 "ribose phosphate biosynthetic process" GO:0072521 "purine-containing compound biosynthetic process" GO:0000447 "ribosomal small subunit biogenesis" GO:0006399 "RNA processing" GO:0042255 "ribonucleoprotein complex biogenesis" GO:0001522 "RNA modification" GO:0043414 "macromolecule methylation" GO:0006626 "macromolecule localization" GO:0006458 "protein maturation" GO:0006573 "amino acid metabolic process" GO:0000027 "ribonucleoprotein complex biogenesis" GO:0006605 "macromolecule localization" GO:0046907 "cellular localization" GO:0070585 "macromolecule localization" GO:0072655 "macromolecule localization" GO:0051649 "cellular localization" GO:0071806 "cellular localization" GO:0009097 "amino acid metabolic process" GO:0006417 "translation" GO:0006996 "ribonucleoprotein complex biogenesis" GO:0015031 "macromolecule localization" GO:0000479 "ribosomal small subunit biogenesis" GO:0032259 "macromolecule methylation" GO:0051640 "ribosome localization" GO:0030150 "macromolecule localization" GO:0006549 "amino acid metabolic process" GO:0006403 "macromolecule localization" GO:0034248 "translation" GO:0006163 "purine-containing compound biosynthetic process" GO:0043650 "nucleotide biosynthetic process" GO:0044272 "sulfur compound biosynthetic process" Number of Biological process parent terms: amino acid metabolic process 8 cellular localization 9 electron transport chain 10 macromolecule localization 11 macromolecule methylation 2 nucleotide biosynthetic process 23 organophosphate biosynthetic process 2 protein-containing complex localization 1 protein-RNA complex assembly 3 protein maturation 2 purine-containing compound biosynthetic process 4 pyrimidine nucleotide biosynthetic process 5 regulation of translational fidelity 1 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum 1 ribonucleoprotein complex biogenesis 8 ribose phosphate biosynthetic process 7 ribosomal small subunit biogenesis 8 ribosome localization 4 RNA modification 3 RNA processing 7 sulfur compound biosynthetic process 1 translation 12 Molecular function parent terms of GO terms are: term GO:0003735 "structural constituent of ribosome" GO:0005198 "structural molecule activity" GO:0003723 "RNA binding" GO:0045182 "translation regulator activity" GO:0008135 "translation factor activity, RNA binding" GO:0090079 "translation regulator activity, nucleic acid binding" GO:0003743 "translation initiation factor activity" GO:0015453 "oxidoreduction-driven active transmembrane transporter activity" GO:0019843 "rRNA binding" GO:0009055 "electron transfer activity" GO:0003724 "RNA helicase activity" GO:0003746 "translation elongation factor activity" GO:0051540 "metal cluster binding" GO:0051536 "iron-sulfur cluster binding" GO:0008186 "ATP-dependent activity, acting on RNA" GO:0003954 "NADH dehydrogenase activity" GO:0140098 "catalytic activity, acting on RNA" GO:0030515 "snoRNA binding" GO:0051539 "4 iron, 4 sulfur cluster binding" GO:0003729 "mRNA binding" GO:0016879 "ligase activity, forming carbon-nitrogen bonds" GO:0140318 "protein transporter activity" GO:0051082 "unfolded protein binding" GO:0031369 "translation initiation factor binding" GO:0017111 "ribonucleoside triphosphate phosphatase activity" GO:0016462 "pyrophosphatase activity" GO:0044183 "protein folding chaperone" GO:0016818 "hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides" parentTerm GO:0003735 "structural constituent of ribosome" GO:0005198 "structural constituent of ribosome" GO:0003723 "RNA binding" GO:0045182 "translation regulator activity" GO:0008135 "translation regulator activity" GO:0090079 "translation regulator activity" GO:0003743 "translation regulator activity" GO:0015453 "oxidoreduction-driven active transmembrane transporter activity" GO:0019843 "RNA binding" GO:0009055 "electron transfer activity" GO:0003724 "RNA helicase activity" GO:0003746 "translation regulator activity" GO:0051540 "metal cluster binding" GO:0051536 "metal cluster binding" GO:0008186 "RNA helicase activity" GO:0003954 "NADH dehydrogenase activity" GO:0140098 "catalytic activity, acting on RNA" GO:0030515 "RNA binding" GO:0051539 "metal cluster binding" GO:0003729 "RNA binding" GO:0016879 "ligase activity, forming carbon-nitrogen bonds" GO:0140318 "oxidoreduction-driven active transmembrane transporter activity" GO:0051082 "unfolded protein binding" GO:0031369 "unfolded protein binding" GO:0017111 "ribonucleoside triphosphate phosphatase activity" GO:0016462 "ribonucleoside triphosphate phosphatase activity" GO:0044183 "protein folding chaperone" GO:0016818 "ribonucleoside triphosphate phosphatase activity" Number of Molecular function parent terms: catalytic activity, acting on RNA 1 electron transfer activity 1 ligase activity, forming carbon-nitrogen bonds 1 metal cluster binding 3 NADH dehydrogenase activity 1 oxidoreduction-driven active transmembrane transporter activity 2 protein folding chaperone 1 ribonucleoside triphosphate phosphatase activity 3 RNA binding 4 RNA helicase activity 2 structural constituent of ribosome 2 translation regulator activity 5 unfolded protein binding 2 Cellular component parent terms of GO terms are: term GO:0005840 "ribosome" GO:1990904 "ribonucleoprotein complex" GO:0044391 "ribosomal subunit" GO:0022626 "cytosolic ribosome" GO:0015934 "large ribosomal subunit" GO:0005829 "cytosol" GO:0005739 "mitochondrion" GO:0015935 "small ribosomal subunit" GO:0022627 "cytosolic small ribosomal subunit" GO:0005852 "eukaryotic translation initiation factor 3 complex" GO:0033290 "eukaryotic 48S preinitiation complex" GO:0005730 "nucleolus" GO:0070993 "translation preinitiation complex" GO:0019866 "organelle inner membrane" GO:0070013 "intracellular organelle lumen" GO:0043233 "organelle lumen" GO:0031974 "membrane-enclosed lumen" GO:0031975 "envelope" GO:0031967 "organelle envelope" GO:0005743 "mitochondrial inner membrane" GO:0005740 "mitochondrial envelope" GO:0031966 "mitochondrial membrane" GO:0016282 "eukaryotic 43S preinitiation complex" GO:0098798 "mitochondrial protein-containing complex" GO:0022625 "cytosolic large ribosomal subunit" GO:0070469 "respirasome" GO:0098800 "inner mitochondrial membrane protein complex" GO:0031981 "nuclear lumen" GO:0098803 "respiratory chain complex" GO:1902495 "transmembrane transporter complex" GO:0005746 "mitochondrial respirasome" GO:0098796 "membrane protein complex" GO:1990351 "transporter complex" GO:0005759 "mitochondrial matrix" GO:0030684 "preribosome" GO:0030660 "Golgi-associated vesicle membrane" GO:0005762 "mitochondrial large ribosomal subunit" GO:0000315 "organellar large ribosomal subunit" GO:0005732 "sno(s)RNA-containing ribonucleoprotein complex" GO:0005761 "mitochondrial ribosome" GO:0000313 "organellar ribosome" GO:0005798 "Golgi-associated vesicle" GO:0030120 "vesicle coat" GO:0032040 "small-subunit processome" GO:0005844 NA GO:1990204 "oxidoreductase complex" GO:0030662 "coated vesicle membrane" parentTerm GO:0005840 "ribosome" GO:1990904 "ribonucleoprotein complex" GO:0044391 "ribosome" GO:0022626 "ribosome" GO:0015934 "ribosome" GO:0005829 "cytosol" GO:0005739 "mitochondrion" GO:0015935 "ribosome" GO:0022627 "ribosome" GO:0005852 "eukaryotic translation initiation factor 3 complex" GO:0033290 "ribonucleoprotein complex" GO:0005730 "nucleolus" GO:0070993 "ribonucleoprotein complex" GO:0019866 "organelle inner membrane" GO:0070013 "nucleolus" GO:0043233 "nucleolus" GO:0031974 "nucleolus" GO:0031975 "organelle inner membrane" GO:0031967 "organelle inner membrane" GO:0005743 "organelle inner membrane" GO:0005740 "organelle inner membrane" GO:0031966 "organelle inner membrane" GO:0016282 "ribonucleoprotein complex" GO:0098798 "mitochondrion" GO:0022625 "ribosome" GO:0070469 "respirasome" GO:0098800 "mitochondrion" GO:0031981 "nucleolus" GO:0098803 "respirasome" GO:1902495 "transmembrane transporter complex" GO:0005746 "respirasome" GO:0098796 "membrane protein complex" GO:1990351 "transmembrane transporter complex" GO:0005759 "nucleolus" GO:0030684 "ribonucleoprotein complex" GO:0030660 "Golgi-associated vesicle membrane" GO:0005762 "ribosome" GO:0000315 "ribosome" GO:0005732 "ribonucleoprotein complex" GO:0005761 "ribosome" GO:0000313 "ribosome" GO:0005798 "Golgi-associated vesicle membrane" GO:0030120 "Golgi-associated vesicle membrane" GO:0032040 "ribonucleoprotein complex" GO:0005844 NA GO:1990204 "oxidoreductase complex" GO:0030662 "Golgi-associated vesicle membrane" Number of Cellular component parent terms: cytosol eukaryotic translation initiation factor 3 complex 1 1 Golgi-associated vesicle membrane membrane protein complex 4 1 mitochondrion nucleolus 3 6 organelle inner membrane oxidoreductase complex 6 1 respirasome ribonucleoprotein complex 3 7 ribosome transmembrane transporter complex 11 2 Number of GO terms for which NO parent term was found: 9 No parent term was found for the following GO terms: [1] "EC:3.6.4.13" "GO:0030529" [3] "L-amino acid metabolic process" "proteinogenic amino acid metabolic process" [5] "GO:0005844" "EC:3.6.1.15" [7] "L-amino acid biosynthetic process" "proteinogenic amino acid biosynthetic process" [9] "import into the mitochondrion" -------------------------------------------------------------- Number of enriched KEGG pathways: 2 KEGG pathways are: [1] "Ribosome - Aspergillus oryzae" "Oxidative phosphorylation - Aspergillus oryzae" ######################################################################################################################## Cluster number 17 Number of genes in cluster 17 is: 220 Genes in cluster 17 are: [1] "AO090001000117" "AO090001000119" "AO090001000179" "AO090001000273" "AO090001000341" "AO090001000342" [7] "AO090001000518" "AO090001000576" "AO090001000599" "AO090001000630" "AO090001000639" "AO090001000694" [13] "AO090001000695" "AO090001000739" "AO090003000026" "AO090003000074" "AO090003000103" "AO090003000107" [19] "AO090003000122" "AO090003000172" "AO090003000225" "AO090003000235" "AO090003000283" "AO090003000289" [25] "AO090003000303" "AO090003000592" "AO090003000701" "AO090003000720" "AO090003000728" "AO090003000755" [31] "AO090003000905" "AO090003000928" "AO090003001140" "AO090003001153" "AO090003001181" "AO090003001246" [37] "AO090003001258" "AO090003001321" "AO090003001331" "AO090003001367" "AO090003001379" "AO090003001489" [43] "AO090005000002" "AO090005000184" "AO090005000291" "AO090005000293" "AO090005000294" "AO090005000400" [49] "AO090005000660" "AO090005000695" "AO090005000717" "AO090005000756" "AO090005000786" "AO090005000787" [55] "AO090005000842" "AO090005000997" "AO090005000998" "AO090005000999" "AO090005001067" "AO090005001068" [61] "AO090005001115" "AO090005001130" "AO090005001131" "AO090005001166" "AO090005001187" "AO090005001193" [67] "AO090005001414" "AO090005001500" "AO090005001549" "AO090009000284" "AO090009000375" "AO090009000462" [73] "AO090009000477" "AO090009000526" "AO090009000649" "AO090009000650" "AO090009000692" "AO090010000035" [79] "AO090010000037" "AO090010000062" "AO090010000097" "AO090010000168" "AO090010000215" "AO090010000233" [85] "AO090010000234" "AO090010000285" "AO090010000286" "AO090010000440" "AO090010000583" "AO090010000748" [91] "AO090010000761" "AO090011000044" "AO090011000057" "AO090011000073" "AO090011000178" "AO090011000218" [97] "AO090011000219" "AO090011000301" "AO090011000378" "AO090011000384" "AO090011000480" "AO090011000530" [103] "AO090011000621" "AO090011000816" "AO090011000840" "AO090012000014" "AO090012000015" "AO090012000056" [109] "AO090012000126" "AO090012000147" "AO090012000148" "AO090012000451" "AO090012000472" "AO090012000813" [115] "AO090012000849" "AO090020000046" "AO090020000136" "AO090020000178" "AO090020000302" "AO090020000319" [121] "AO090020000328" "AO090020000466" "AO090020000616" "AO090020000666" "AO090023000047" "AO090023000048" [127] "AO090023000137" "AO090023000138" "AO090023000167" "AO090023000197" "AO090023000198" "AO090023000202" [133] "AO090023000215" "AO090023000228" "AO090023000231" "AO090023000238" "AO090023000251" "AO090023000330" [139] "AO090023000407" "AO090023000427" "AO090023000454" "AO090023000477" "AO090023000496" "AO090023000519" [145] "AO090023000521" "AO090023000559" "AO090023000587" "AO090023000612" "AO090023000668" "AO090023000681" [151] "AO090023000730" "AO090023000751" "AO090023000787" "AO090023000794" "AO090023000795" "AO090023000933" [157] "AO090023000964" "AO090023000999" "AO090026000035" "AO090026000161" "AO090026000238" "AO090026000296" [163] "AO090026000412" "AO090026000447" "AO090026000563" "AO090026000587" "AO090026000604" "AO090026000686" [169] "AO090038000032" "AO090038000083" "AO090038000084" "AO090038000085" "AO090038000350" "AO090038000376" [175] "AO090038000392" "AO090038000428" "AO090038000464" "AO090038000491" "AO090102000034" "AO090102000110" [181] "AO090102000129" "AO090102000147" "AO090102000218" "AO090102000313" "AO090102000390" "AO090102000520" [187] "AO090102000551" "AO090102000565" "AO090102000574" "AO090103000016" "AO090103000017" "AO090103000208" [193] "AO090103000275" "AO090103000289" "AO090103000442" "AO090113000003" "AO090113000019" "AO090113000105" [199] "AO090113000131" "AO090113000142" "AO090120000144" "AO090120000284" "AO090120000394" "AO090120000462" [205] "AO090124000061" "AO090166000017" "AO090166000052" "AO090206000082" "AO090701000169" "AO090701000218" [211] "AO090701000230" "AO090701000371" "AO090701000378" "AO090701000481" "AO090701000608" "AO090701000638" [217] "AO090701000702" "AO090701000786" "AO090701000800" "AO090701000836" -------------------------------------------------------------- Number of enriched GO terms: 8 GO terms are: [1] "DNA-binding transcription factor activity, RNA polymerase II-specific" [2] "DNA-binding transcription factor activity" [3] "transcription regulator activity" [4] "regulation of transcription by RNA polymerase II" [5] "transcription by RNA polymerase II" [6] "DNA repair" [7] "DNA damage response" [8] "DNA metabolic process" Parent terms retrieved using org.Sc.sgd.db (S. cerevisiae) Biological process parent terms of GO terms are: term GO:0006357 "regulation of transcription by RNA polymerase II" GO:0006366 "transcription by RNA polymerase II" GO:0006281 "DNA repair" GO:0006974 "DNA damage response" GO:0006259 "DNA metabolic process" parentTerm GO:0006357 "regulation of transcription by RNA polymerase II" GO:0006366 "regulation of transcription by RNA polymerase II" GO:0006281 "DNA repair" GO:0006974 "DNA repair" GO:0006259 "regulation of transcription by RNA polymerase II" Number of Biological process parent terms: DNA repair regulation of transcription by RNA polymerase II 2 3 Molecular function parent terms of GO terms are: term GO:0000981 "DNA-binding transcription factor activity, RNA polymerase II-specific" GO:0140110 "transcription regulator activity" GO:0003700 "DNA-binding transcription factor activity" parentTerm GO:0000981 "DNA-binding transcription factor activity, RNA polymerase II-specific" GO:0140110 "DNA-binding transcription factor activity, RNA polymerase II-specific" GO:0003700 "DNA-binding transcription factor activity, RNA polymerase II-specific" Number of Molecular function parent terms: DNA-binding transcription factor activity, RNA polymerase II-specific 3 No Cellular component parent terms found. Number of GO terms for which NO parent term was found: 0 -------------------------------------------------------------- No enriched KEGG pathways. ######################################################################################################################## Cluster number 18 Number of genes in cluster 18 is: 255 Genes in cluster 18 are: [1] "AO090001000049" "AO090001000050" "AO090001000118" "AO090001000144" "AO090001000171" "AO090001000420" [7] "AO090001000421" "AO090001000425" "AO090001000516" "AO090001000574" "AO090001000582" "AO090003000027" [13] "AO090003000126" "AO090003000389" "AO090003000434" "AO090003000610" "AO090003000627" "AO090003000781" [19] "AO090003000909" "AO090003000972" "AO090003001119" "AO090003001185" "AO090003001369" "AO090003001373" [25] "AO090003001374" "AO090003001380" "AO090003001478" "AO090003001479" "AO090003001480" "AO090003001550" [31] "AO090005000051" "AO090005000117" "AO090005000213" "AO090005000266" "AO090005000420" "AO090005000453" [37] "AO090005000454" "AO090005000473" "AO090005000480" "AO090005000539" "AO090005000546" "AO090005000547" [43] "AO090005000548" "AO090005000587" "AO090005000718" "AO090005001066" "AO090005001176" "AO090005001219" [49] "AO090005001333" "AO090005001334" "AO090005001449" "AO090009000012" "AO090009000095" "AO090009000135" [55] "AO090009000296" "AO090009000329" "AO090009000351" "AO090009000431" "AO090009000537" "AO090009000538" [61] "AO090009000648" "AO090010000023" "AO090010000230" "AO090010000231" "AO090010000232" "AO090010000238" [67] "AO090010000263" "AO090010000293" "AO090010000309" "AO090010000320" "AO090010000321" "AO090010000368" [73] "AO090010000405" "AO090010000407" "AO090010000423" "AO090010000424" "AO090010000426" "AO090010000484" [79] "AO090010000495" "AO090010000530" "AO090010000538" "AO090010000613" "AO090010000617" "AO090010000632" [85] "AO090010000638" "AO090010000668" "AO090010000671" "AO090010000672" "AO090010000673" "AO090011000005" [91] "AO090011000006" "AO090011000071" "AO090011000072" "AO090011000128" "AO090011000129" "AO090011000150" [97] "AO090011000207" "AO090011000208" "AO090011000241" "AO090011000335" "AO090011000337" "AO090011000349" [103] "AO090011000368" "AO090011000418" "AO090011000443" "AO090011000444" "AO090011000471" "AO090011000548" [109] "AO090011000557" "AO090011000561" "AO090011000562" "AO090011000568" "AO090011000817" "AO090012000019" [115] "AO090012000020" "AO090012000021" "AO090012000043" "AO090012000226" "AO090012000284" "AO090012000342" [121] "AO090012000413" "AO090012000428" "AO090012000484" "AO090012000545" "AO090012000829" "AO090012000859" [127] "AO090012000860" "AO090012000984" "AO090020000135" "AO090020000166" "AO090020000311" "AO090020000383" [133] "AO090020000385" "AO090020000628" "AO090020000677" "AO090020000690" "AO090023000043" "AO090023000045" [139] "AO090023000046" "AO090023000049" "AO090023000062" "AO090023000086" "AO090023000094" "AO090023000097" [145] "AO090023000119" "AO090023000154" "AO090023000157" "AO090023000187" "AO090023000188" "AO090023000252" [151] "AO090023000266" "AO090023000347" "AO090023000460" "AO090023000568" "AO090023000569" "AO090023000588" [157] "AO090023000773" "AO090023000774" "AO090023000875" "AO090023000878" "AO090023000880" "AO090026000093" [163] "AO090026000094" "AO090026000182" "AO090026000216" "AO090026000242" "AO090026000297" "AO090026000344" [169] "AO090026000363" "AO090026000485" "AO090026000525" "AO090026000564" "AO090026000800" "AO090026000818" [175] "AO090038000045" "AO090038000070" "AO090038000103" "AO090038000115" "AO090038000136" "AO090038000185" [181] "AO090038000263" "AO090038000378" "AO090038000402" "AO090038000449" "AO090102000040" "AO090102000049" [187] "AO090102000261" "AO090102000424" "AO090102000458" "AO090102000459" "AO090102000460" "AO090102000464" [193] "AO090103000099" "AO090103000109" "AO090103000110" "AO090103000111" "AO090103000154" "AO090103000159" [199] "AO090103000174" "AO090103000175" "AO090103000176" "AO090103000177" "AO090103000178" "AO090103000371" [205] "AO090103000387" "AO090103000427" "AO090103000428" "AO090103000453" "AO090113000132" "AO090113000137" [211] "AO090113000198" "AO090120000002" "AO090120000009" "AO090120000037" "AO090120000042" "AO090120000174" [217] "AO090120000176" "AO090120000271" "AO090120000367" "AO090120000379" "AO090120000436" "AO090124000015" [223] "AO090124000025" "AO090124000029" "AO090124000070" "AO090138000044" "AO090138000057" "AO090138000102" [229] "AO090138000103" "AO090138000113" "AO090138000115" "AO090138000121" "AO090138000129" "AO090138000147" [235] "AO090138000148" "AO090138000176" "AO090138000198" "AO090701000115" "AO090701000251" "AO090701000285" [241] "AO090701000346" "AO090701000351" "AO090701000420" "AO090701000503" "AO090701000514" "AO090701000515" [247] "AO090701000619" "AO090701000656" "AO090701000818" "AO090701000819" "AO090701000821" "AO090701000824" [253] "AO090701000870" "AO090701000871" "AO090701000872" -------------------------------------------------------------- Number of enriched GO terms: 2 GO terms are: [1] "EC:1.6" "GO:0055114" Parent terms retrieved using org.Sc.sgd.db (S. cerevisiae) No Biological process parent terms found. No Molecular function parent terms found. No Cellular component parent terms found. Number of GO terms for which NO parent term was found: 2 No parent term was found for the following GO terms: [1] "EC:1.6" "GO:0055114" -------------------------------------------------------------- Number of enriched KEGG pathways: 2 KEGG pathways are: [1] "Vitamin B6 metabolism - Aspergillus oryzae" "ABC transporters - Aspergillus oryzae" ######################################################################################################################## Cluster number 19 Number of genes in cluster 19 is: 240 Genes in cluster 19 are: [1] "AO090001000092" "AO090001000094" "AO090001000115" "AO090001000116" "AO090001000278" "AO090001000336" [7] "AO090001000426" "AO090001000467" "AO090001000572" "AO090001000585" "AO090001000689" "AO090001000727" [13] "AO090001000738" "AO090003000109" "AO090003000290" "AO090003000305" "AO090003000321" "AO090003000343" [19] "AO090003000423" "AO090003000425" "AO090003000458" "AO090003000538" "AO090003000546" "AO090003000590" [25] "AO090003000606" "AO090003000675" "AO090003000763" "AO090003000916" "AO090003001091" "AO090003001160" [31] "AO090003001161" "AO090003001196" "AO090003001309" "AO090003001312" "AO090003001345" "AO090003001377" [37] "AO090003001515" "AO090003001521" "AO090003001522" "AO090003001523" "AO090005000048" "AO090005000277" [43] "AO090005000362" "AO090005000426" "AO090005000434" "AO090005000519" "AO090005000570" "AO090005000669" [49] "AO090005000864" "AO090005000865" "AO090005001038" "AO090005001206" "AO090005001228" "AO090005001351" [55] "AO090005001400" "AO090005001445" "AO090005001473" "AO090005001507" "AO090005001560" "AO090009000008" [61] "AO090009000025" "AO090009000121" "AO090009000133" "AO090009000213" "AO090009000266" "AO090009000308" [67] "AO090009000373" "AO090010000098" "AO090010000325" "AO090010000326" "AO090010000507" "AO090010000540" [73] "AO090010000678" "AO090010000688" "AO090010000718" "AO090010000721" "AO090010000732" "AO090010000733" [79] "AO090010000734" "AO090010000752" "AO090011000014" "AO090011000025" "AO090011000143" "AO090011000144" [85] "AO090011000166" "AO090011000240" "AO090011000310" "AO090011000358" "AO090011000501" "AO090011000600" [91] "AO090011000601" "AO090011000624" "AO090011000634" "AO090011000861" "AO090011000879" "AO090011000880" [97] "AO090011000921" "AO090012000127" "AO090012000177" "AO090012000257" "AO090012000266" "AO090012000290" [103] "AO090012000398" "AO090012000432" "AO090012000470" "AO090012000471" "AO090012000485" "AO090012000520" [109] "AO090012000522" "AO090012000612" "AO090012000749" "AO090012000846" "AO090012000910" "AO090012000956" [115] "AO090020000009" "AO090020000027" "AO090020000146" "AO090020000210" "AO090020000218" "AO090020000384" [121] "AO090020000427" "AO090020000514" "AO090020000557" "AO090020000658" "AO090023000100" "AO090023000195" [127] "AO090023000329" "AO090023000331" "AO090023000354" "AO090023000390" "AO090023000468" "AO090023000485" [133] "AO090023000558" "AO090023000566" "AO090023000583" "AO090023000719" "AO090023000775" "AO090023000822" [139] "AO090023000877" "AO090023000914" "AO090023000936" "AO090023000947" "AO090026000011" "AO090026000012" [145] "AO090026000016" "AO090026000017" "AO090026000079" "AO090026000128" "AO090026000129" "AO090026000132" [151] "AO090026000204" "AO090026000241" "AO090026000437" "AO090026000477" "AO090026000562" "AO090026000646" [157] "AO090026000715" "AO090026000747" "AO090026000778" "AO090026000801" "AO090026000821" "AO090038000173" [163] "AO090038000459" "AO090038000469" "AO090038000532" "AO090038000555" "AO090038000556" "AO090038000580" [169] "AO090038000621" "AO090102000005" "AO090102000051" "AO090102000130" "AO090102000158" "AO090102000159" [175] "AO090102000160" "AO090102000175" "AO090102000190" "AO090102000194" "AO090102000195" "AO090102000196" [181] "AO090102000208" "AO090102000277" "AO090102000351" "AO090102000536" "AO090102000608" "AO090102000635" [187] "AO090102000646" "AO090103000014" "AO090103000030" "AO090103000330" "AO090103000335" "AO090103000341" [193] "AO090103000366" "AO090103000407" "AO090103000430" "AO090103000443" "AO090113000015" "AO090113000086" [199] "AO090113000138" "AO090120000007" "AO090120000138" "AO090120000207" "AO090120000366" "AO090120000409" [205] "AO090124000012" "AO090124000014" "AO090124000073" "AO090138000005" "AO090138000098" "AO090138000100" [211] "AO090138000101" "AO090138000105" "AO090138000118" "AO090138000200" "AO090166000016" "AO090206000031" [217] "AO090206000032" "AO090206000038" "AO090206000072" "AO090206000114" "AO090206000120" "AO090206000121" [223] "AO090701000046" "AO090701000158" "AO090701000224" "AO090701000239" "AO090701000373" "AO090701000403" [229] "AO090701000450" "AO090701000452" "AO090701000482" "AO090701000508" "AO090701000639" "AO090701000648" [235] "AO090701000667" "AO090701000694" "AO090701000788" "AO090701000801" "AO090701000879" "AO090701000880" -------------------------------------------------------------- No enriched GO terms. -------------------------------------------------------------- No enriched KEGG pathways. ######################################################################################################################## Cluster number 20 Number of genes in cluster 20 is: 98 Genes in cluster 20 are: [1] "AO090001000095" "AO090001000141" "AO090001000207" "AO090001000443" "AO090003000088" "AO090003000219" [7] "AO090003000230" "AO090003000312" "AO090003000358" "AO090003000768" "AO090003000943" "AO090003000983" [13] "AO090003001385" "AO090003001463" "AO090003001464" "AO090003001465" "AO090003001466" "AO090003001481" [19] "AO090005000090" "AO090005000219" "AO090005000303" "AO090005000304" "AO090005000449" "AO090005000816" [25] "AO090005000863" "AO090005000926" "AO090005001027" "AO090009000055" "AO090009000119" "AO090009000165" [31] "AO090009000342" "AO090009000577" "AO090009000600" "AO090009t00007" "AO090010000050" "AO090010000099" [37] "AO090010000100" "AO090010000142" "AO090010000312" "AO090010000314" "AO090010000392" "AO090010000412" [43] "AO090010000659" "AO090011000020" "AO090011000125" "AO090011000171" "AO090011000385" "AO090011000881" [49] "AO090012000156" "AO090012000338" "AO090012000760" "AO090012000939" "AO090020000265" "AO090020000640" [55] "AO090023000006" "AO090023000130" "AO090023000158" "AO090023000159" "AO090023000186" "AO090023000193" [61] "AO090023000194" "AO090023000297" "AO090023000406" "AO090023000409" "AO090023000410" "AO090023000419" [67] "AO090023000421" "AO090023000718" "AO090026000776" "AO090026000779" "AO090026000781" "AO090026000783" [73] "AO090038000029" "AO090038000040" "AO090038000053" "AO090038000054" "AO090038000065" "AO090038000262" [79] "AO090038000306" "AO090102000029" "AO090102000030" "AO090102000050" "AO090102000073" "AO090102000172" [85] "AO090103000087" "AO090103000187" "AO090113000084" "AO090113000140" "AO090113000141" "AO090124000013" [91] "AO090124000019" "AO090138000042" "AO090138000163" "AO090138000194" "AO090308000019" "AO090701000583" [97] "AO090701000683" "AO090701000884" -------------------------------------------------------------- No enriched GO terms. -------------------------------------------------------------- No enriched KEGG pathways. ######################################################################################################################## Cluster number 21 Number of genes in cluster 21 is: 205 Genes in cluster 21 are: [1] "AO090001000015" "AO090001000106" "AO090001000151" "AO090001000152" "AO090001000168" "AO090001000188" [7] "AO090001000221" "AO090001000275" "AO090001000563" "AO090001000634" "AO090003000268" "AO090003000411" [13] "AO090003000474" "AO090003000778" "AO090003000787" "AO090003000802" "AO090003000854" "AO090003001077" [19] "AO090003001086" "AO090003001087" "AO090003001239" "AO090003001406" "AO090003001475" "AO090003001549" [25] "AO090005000050" "AO090005000161" "AO090005000166" "AO090005000186" "AO090005000355" "AO090005000379" [31] "AO090005000397" "AO090005000515" "AO090005000545" "AO090005000571" "AO090005000694" "AO090005000723" [37] "AO090005000758" "AO090005000902" "AO090005000932" "AO090005001008" "AO090005001154" "AO090005001180" [43] "AO090005001191" "AO090005001199" "AO090005001204" "AO090005001211" "AO090005001212" "AO090005001213" [49] "AO090005001270" "AO090005001317" "AO090005001399" "AO090005001436" "AO090005001437" "AO090005001444" [55] "AO090005001464" "AO090009000015" "AO090009000016" "AO090009000093" "AO090009000098" "AO090009000123" [61] "AO090009000124" "AO090009000125" "AO090009000275" "AO090009000416" "AO090009000523" "AO090009000565" [67] "AO090009000579" "AO090010000005" "AO090010000046" "AO090010000057" "AO090010000202" "AO090010000219" [73] "AO090010000229" "AO090010000353" "AO090010000413" "AO090010000485" "AO090010000705" "AO090011000060" [79] "AO090011000085" "AO090011000232" "AO090011000336" "AO090011000364" "AO090011000413" "AO090011000414" [85] "AO090011000415" "AO090011000417" "AO090011000649" "AO090011000781" "AO090011000795" "AO090011000802" [91] "AO090012000139" "AO090012000169" "AO090012000170" "AO090012000310" "AO090012000311" "AO090012000312" [97] "AO090012000313" "AO090012000314" "AO090012000315" "AO090012000531" "AO090012000541" "AO090012000549" [103] "AO090012000603" "AO090012000622" "AO090012000623" "AO090012000624" "AO090012000625" "AO090012000626" [109] "AO090012000701" "AO090012000710" "AO090012000757" "AO090012000800" "AO090012000812" "AO090020000209" [115] "AO090020000235" "AO090020000236" "AO090020000339" "AO090020000351" "AO090020000356" "AO090020000478" [121] "AO090020000635" "AO090020000639" "AO090020000650" "AO090020000652" "AO090020000654" "AO090020000696" [127] "AO090023000059" "AO090023000060" "AO090023000077" "AO090023000161" "AO090023000373" "AO090023000375" [133] "AO090023000411" "AO090023000489" "AO090023000585" "AO090023000599" "AO090023000658" "AO090023000923" [139] "AO090026000125" "AO090026000255" "AO090026000469" "AO090026000512" "AO090026000513" "AO090026000643" [145] "AO090026000709" "AO090026000752" "AO090026000812" "AO090038000077" "AO090038000111" "AO090038000126" [151] "AO090038000177" "AO090038000314" "AO090038000367" "AO090038000426" "AO090038000482" "AO090038000483" [157] "AO090038000497" "AO090038000565" "AO090102000052" "AO090102000062" "AO090102000071" "AO090102000171" [163] "AO090102000258" "AO090102000259" "AO090102000260" "AO090102000318" "AO090102000362" "AO090102000375" [169] "AO090102000585" "AO090102000599" "AO090102000604" "AO090102000632" "AO090103000165" "AO090103000170" [175] "AO090103000206" "AO090103000211" "AO090103000303" "AO090103000433" "AO090113000091" "AO090113000199" [181] "AO090120000239" "AO090120000341" "AO090120000354" "AO090120000414" "AO090120000471" "AO090124000045" [187] "AO090138000062" "AO090138000095" "AO090138000127" "AO090138000195" "AO090166000032" "AO090166000079" [193] "AO090166000084" "AO090166000103" "AO090701000133" "AO090701000147" "AO090701000192" "AO090701000209" [199] "AO090701000231" "AO090701000344" "AO090701000421" "AO090701000618" "AO090701000692" "AO090701000717" [205] "AO090701000815" -------------------------------------------------------------- No enriched GO terms. -------------------------------------------------------------- No enriched KEGG pathways. ######################################################################################################################## Cluster number 22 Number of genes in cluster 22 is: 146 Genes in cluster 22 are: [1] "AO090001000017" "AO090001000154" "AO090001000333" "AO090001000357" "AO090001000383" "AO090001000453" [7] "AO090001000704" "AO090001000707" "AO090001000725" "AO090003000092" "AO090003000102" "AO090003000297" [13] "AO090003000381" "AO090003000470" "AO090003000521" "AO090003000550" "AO090003000655" "AO090003000664" [19] "AO090003000676" "AO090003000868" "AO090003000879" "AO090003001052" "AO090003001192" "AO090003001198" [25] "AO090003001400" "AO090005000023" "AO090005000062" "AO090005000084" "AO090005000418" "AO090005000455" [31] "AO090005000528" "AO090005000585" "AO090005000664" "AO090005000854" "AO090005000966" "AO090005001110" [37] "AO090005001142" "AO090005001210" "AO090005001234" "AO090005001286" "AO090005001396" "AO090005001476" [43] "AO090005001496" "AO090005001514" "AO090005001516" "AO090005001572" "AO090005001593" "AO090005001606" [49] "AO090009000309" "AO090009000380" "AO090009000502" "AO090010000051" "AO090010000052" "AO090010000218" [55] "AO090010000300" "AO090010000459" "AO090010000505" "AO090010000608" "AO090010000642" "AO090010000643" [61] "AO090011000130" "AO090011000145" "AO090011000291" "AO090011000509" "AO090011000534" "AO090011000755" [67] "AO090011000857" "AO090012000268" "AO090012000565" "AO090012000806" "AO090012000830" "AO090012000887" [73] "AO090012000942" "AO090012000973" "AO090012000988" "AO090020000112" "AO090020000285" "AO090020000428" [79] "AO090020000596" "AO090020000615" "AO090020000683" "AO090023000034" "AO090023000121" "AO090023000125" [85] "AO090023000207" "AO090023000413" "AO090023000536" "AO090023000638" "AO090023000726" "AO090023000781" [91] "AO090023000789" "AO090023000998" "AO090023001006" "AO090026000036" "AO090026000064" "AO090026000325" [97] "AO090026000356" "AO090026000476" "AO090026000519" "AO090026000637" "AO090038000078" "AO090038000238" [103] "AO090038000377" "AO090038000511" "AO090102000009" "AO090102000036" "AO090102000102" "AO090102000161" [109] "AO090102000163" "AO090102000295" "AO090102000356" "AO090102000533" "AO090102000542" "AO090102000543" [115] "AO090102000596" "AO090102000617" "AO090102000629" "AO090103000078" "AO090103000160" "AO090103000301" [121] "AO090103000367" "AO090103000421" "AO090113000010" "AO090113000011" "AO090120000120" "AO090120000121" [127] "AO090120000141" "AO090120000282" "AO090120000309" "AO090120000323" "AO090120000325" "AO090120000386" [133] "AO090120000390" "AO090124000026" "AO090124000031" "AO090124000078" "AO090701000040" "AO090701000059" [139] "AO090701000093" "AO090701000100" "AO090701000107" "AO090701000108" "AO090701000277" "AO090701000301" [145] "AO090701000302" "AO090701000835" -------------------------------------------------------------- Number of enriched GO terms: 2 GO terms are: [1] "mitochondrion" "mitochondrial gene expression" Parent terms retrieved using org.Sc.sgd.db (S. cerevisiae) No Biological process parent terms found. No Molecular function parent terms found. No Cellular component parent terms found. Number of GO terms for which NO parent term was found: 2 No parent term was found for the following GO terms: [1] "mitochondrion" "mitochondrial gene expression" -------------------------------------------------------------- No enriched KEGG pathways. ######################################################################################################################## Cluster number 23 Number of genes in cluster 23 is: 326 Genes in cluster 23 are: [1] "AO090001000160" "AO090001000173" "AO090001000208" "AO090001000230" "AO090001000233" "AO090001000328" [7] "AO090001000376" "AO090001000547" "AO090001000548" "AO090001000560" "AO090001000750" "AO090003000016" [13] "AO090003000017" "AO090003000040" "AO090003000047" "AO090003000058" "AO090003000060" "AO090003000095" [19] "AO090003000188" "AO090003000248" "AO090003000279" "AO090003000288" "AO090003000293" "AO090003000310" [25] "AO090003000393" "AO090003000424" "AO090003000682" "AO090003000711" "AO090003000727" "AO090003000761" [31] "AO090003000779" "AO090003000780" "AO090003000818" "AO090003000873" "AO090003000960" "AO090003001006" [37] "AO090003001007" "AO090003001061" "AO090003001062" "AO090003001075" "AO090003001095" "AO090003001184" [43] "AO090003001237" "AO090003001332" "AO090003001376" "AO090003001378" "AO090003001383" "AO090003001384" [49] "AO090003001415" "AO090003001446" "AO090003001472" "AO090003001473" "AO090003001492" "AO090005000100" [55] "AO090005000136" "AO090005000138" "AO090005000187" "AO090005000215" "AO090005000278" "AO090005000301" [61] "AO090005000361" "AO090005000407" "AO090005000444" "AO090005000469" "AO090005000481" "AO090005000493" [67] "AO090005000575" "AO090005000622" "AO090005000658" "AO090005000726" "AO090005000735" "AO090005000738" [73] "AO090005000887" "AO090005000941" "AO090005000973" "AO090005000985" "AO090005000986" "AO090005001147" [79] "AO090005001314" "AO090005001349" "AO090005001358" "AO090005001423" "AO090005001427" "AO090005001508" [85] "AO090009000002" "AO090009000009" "AO090009000053" "AO090009000097" "AO090009000109" "AO090009000148" [91] "AO090009000272" "AO090009000273" "AO090009000418" "AO090009000472" "AO090009000473" "AO090009000484" [97] "AO090009000493" "AO090009000553" "AO090009000556" "AO090009000563" "AO090009000630" "AO090010000024" [103] "AO090010000030" "AO090010000034" "AO090010000077" "AO090010000078" "AO090010000125" "AO090010000126" [109] "AO090010000132" "AO090010000133" "AO090010000251" "AO090010000262" "AO090010000268" "AO090010000350" [115] "AO090010000471" "AO090010000473" "AO090010000639" "AO090010000686" "AO090010000715" "AO090010000716" [121] "AO090010000726" "AO090011000086" "AO090011000134" "AO090011000149" "AO090011000154" "AO090011000167" [127] "AO090011000211" "AO090011000275" "AO090011000416" "AO090011000419" "AO090011000487" "AO090011000489" [133] "AO090011000504" "AO090011000567" "AO090011000722" "AO090011000728" "AO090011000759" "AO090011000760" [139] "AO090011000761" "AO090011000769" "AO090011000770" "AO090011000790" "AO090011000832" "AO090011000920" [145] "AO090012000055" "AO090012000086" "AO090012000087" "AO090012000174" "AO090012000281" "AO090012000287" [151] "AO090012000289" "AO090012000306" "AO090012000366" "AO090012000369" "AO090012000408" "AO090012000411" [157] "AO090012000412" "AO090012000483" "AO090012000493" "AO090012000533" "AO090012000695" "AO090012000711" [163] "AO090012000752" "AO090012000782" "AO090012000869" "AO090012000891" "AO090012000893" "AO090012000927" [169] "AO090012000962" "AO090012001005" "AO090020000041" "AO090020000114" "AO090020000131" "AO090020000180" [175] "AO090020000312" "AO090020000337" "AO090020000455" "AO090020000456" "AO090020000479" "AO090023000032" [181] "AO090023000087" "AO090023000098" "AO090023000115" "AO090023000146" "AO090023000147" "AO090023000150" [187] "AO090023000153" "AO090023000209" "AO090023000310" "AO090023000314" "AO090023000319" "AO090023000353" [193] "AO090023000355" "AO090023000464" "AO090023000479" "AO090023000535" "AO090023000565" "AO090023000589" [199] "AO090023000597" "AO090023000603" "AO090023000604" "AO090023000611" "AO090023000624" "AO090023000652" [205] "AO090023000678" "AO090023000679" "AO090023000745" "AO090023000772" "AO090023000803" "AO090023000824" [211] "AO090023000870" "AO090023000891" "AO090023000899" "AO090023000924" "AO090023000925" "AO090026000040" [217] "AO090026000066" "AO090026000081" "AO090026000193" "AO090026000319" "AO090026000393" "AO090026000421" [223] "AO090026000464" "AO090026000472" "AO090026000473" "AO090026000478" "AO090026000488" "AO090026000504" [229] "AO090026000507" "AO090026000584" "AO090026000607" "AO090026000720" "AO090038000063" "AO090038000064" [235] "AO090038000081" "AO090038000247" "AO090038000270" "AO090038000300" "AO090038000315" "AO090038000489" [241] "AO090038000513" "AO090038000514" "AO090038000564" "AO090038000609" "AO090038000625" "AO090102000054" [247] "AO090102000135" "AO090102000162" "AO090102000252" "AO090102000255" "AO090102000368" "AO090102000387" [253] "AO090102000392" "AO090102000422" "AO090102000423" "AO090102000425" "AO090102000426" "AO090102000427" [259] "AO090102000428" "AO090102000429" "AO090102000433" "AO090102000435" "AO090102000436" "AO090102000438" [265] "AO090102000439" "AO090102000440" "AO090102000541" "AO090102000597" "AO090103000066" "AO090103000074" [271] "AO090103000151" "AO090103000276" "AO090103000310" "AO090103000329" "AO090103000346" "AO090103000485" [277] "AO090113000054" "AO090113000128" "AO090120000006" "AO090120000175" "AO090120000186" "AO090120000223" [283] "AO090120000246" "AO090120000264" "AO090120000276" "AO090120000294" "AO090120000301" "AO090120000364" [289] "AO090120000506" "AO090124000037" "AO090138000056" "AO090138000134" "AO090138000136" "AO090138000137" [295] "AO090138000138" "AO090138000142" "AO090138000143" "AO090138000144" "AO090138000145" "AO090138000149" [301] "AO090138000192" "AO090138000193" "AO090206000005" "AO090206000046" "AO090206000131" "AO090672000006" [307] "AO090701000101" "AO090701000162" "AO090701000171" "AO090701000190" "AO090701000232" "AO090701000279" [313] "AO090701000306" "AO090701000324" "AO090701000376" "AO090701000437" "AO090701000451" "AO090701000519" [319] "AO090701000552" "AO090701000645" "AO090701000784" "AO090701000790" "AO090701000820" "AO090701000829" [325] "AO090701000846" "AO090701000869" -------------------------------------------------------------- Number of enriched GO terms: 7 GO terms are: [1] "proteasomal ubiquitin-independent protein catabolic process" [2] "proteasome core complex" [3] "EC:3.4.25" [4] "threonine-type endopeptidase activity" [5] "proteasome-mediated ubiquitin-dependent protein catabolic process" [6] "proteasome complex" [7] "proteasomal protein catabolic process" Parent terms retrieved using org.Sc.sgd.db (S. cerevisiae) Biological process parent terms of GO terms are: term GO:0010499 "proteasomal ubiquitin-independent protein catabolic process" GO:0043161 "proteasome-mediated ubiquitin-dependent protein catabolic process" GO:0010498 "proteasomal protein catabolic process" parentTerm GO:0010499 "proteasomal ubiquitin-independent protein catabolic process" GO:0043161 "proteasomal ubiquitin-independent protein catabolic process" GO:0010498 "proteasomal ubiquitin-independent protein catabolic process" Number of Biological process parent terms: proteasomal ubiquitin-independent protein catabolic process 3 No Molecular function parent terms found. Cellular component parent terms of GO terms are: term parentTerm GO:0000502 "proteasome complex" "proteasome complex" GO:0005839 "proteasome core complex" "proteasome complex" Number of Cellular component parent terms: proteasome complex 2 Number of GO terms for which NO parent term was found: 2 No parent term was found for the following GO terms: [1] "EC:3.4.25" "threonine-type endopeptidase activity" -------------------------------------------------------------- Number of enriched KEGG pathways: 1 KEGG pathways are: [1] "Proteasome - Aspergillus oryzae" ######################################################################################################################## Cluster number 24 Number of genes in cluster 24 is: 410 Genes in cluster 24 are: [1] "AO090001000058" "AO090001000067" "AO090001000091" "AO090001000137" "AO090001000138" "AO090001000172" [7] "AO090001000199" "AO090001000217" "AO090001000343" "AO090001000350" "AO090001000363" "AO090001000445" [13] "AO090001000476" "AO090001000488" "AO090001000490" "AO090001000573" "AO090001000645" "AO090001000646" [19] "AO090001000647" "AO090001000691" "AO090001000716" "AO090003000029" "AO090003000043" "AO090003000108" [25] "AO090003000123" "AO090003000140" "AO090003000141" "AO090003000157" "AO090003000223" "AO090003000251" [31] "AO090003000262" "AO090003000271" "AO090003000280" "AO090003000309" "AO090003000390" "AO090003000391" [37] "AO090003000392" "AO090003000498" "AO090003000517" "AO090003000532" "AO090003000540" "AO090003000543" [43] "AO090003000555" "AO090003000556" "AO090003000562" "AO090003000594" "AO090003000624" "AO090003000625" [49] "AO090003000632" "AO090003000633" "AO090003000685" "AO090003000686" "AO090003000694" "AO090003000710" [55] "AO090003000756" "AO090003000759" "AO090003000809" "AO090003000919" "AO090003000920" "AO090003000926" [61] "AO090003000967" "AO090003000974" "AO090003000991" "AO090003001004" "AO090003001005" "AO090003001033" [67] "AO090003001034" "AO090003001035" "AO090003001054" "AO090003001064" "AO090003001092" "AO090003001094" [73] "AO090003001108" "AO090003001156" "AO090003001164" "AO090003001182" "AO090003001191" "AO090003001327" [79] "AO090003001353" "AO090003001467" "AO090003001495" "AO090003001520" "AO090005000063" "AO090005000137" [85] "AO090005000142" "AO090005000150" "AO090005000179" "AO090005000180" "AO090005000233" "AO090005000234" [91] "AO090005000243" "AO090005000312" "AO090005000497" "AO090005000518" "AO090005000569" "AO090005000588" [97] "AO090005000589" "AO090005000591" "AO090005000716" "AO090005000789" "AO090005000808" "AO090005000809" [103] "AO090005000810" "AO090005000811" "AO090005000813" "AO090005000822" "AO090005000823" "AO090005000837" [109] "AO090005000838" "AO090005000843" "AO090005001020" "AO090005001075" "AO090005001086" "AO090005001143" [115] "AO090005001196" "AO090005001203" "AO090005001241" "AO090005001264" "AO090005001346" "AO090005001397" [121] "AO090005001398" "AO090005001403" "AO090005001430" "AO090005001498" "AO090005001512" "AO090005001544" [127] "AO090005001548" "AO090005001558" "AO090005001573" "AO090009000010" "AO090009000011" "AO090009000087" [133] "AO090009000163" "AO090009000168" "AO090009000179" "AO090009000180" "AO090009000182" "AO090009000228" [139] "AO090009000259" "AO090009000292" "AO090009000324" "AO090009000334" "AO090009000343" "AO090009000365" [145] "AO090009000393" "AO090009000406" "AO090009000434" "AO090009000488" "AO090009000495" "AO090009000504" [151] "AO090009000552" "AO090009000557" "AO090009000558" "AO090009000559" "AO090009000560" "AO090009000561" [157] "AO090009000602" "AO090010000061" "AO090010000106" "AO090010000120" "AO090010000127" "AO090010000221" [163] "AO090010000254" "AO090010000279" "AO090010000349" "AO090010000354" "AO090010000360" "AO090010000361" [169] "AO090010000442" "AO090010000492" "AO090010000493" "AO090010000496" "AO090010000579" "AO090010000695" [175] "AO090010000696" "AO090011000022" "AO090011000108" "AO090011000110" "AO090011000174" "AO090011000201" [181] "AO090011000204" "AO090011000213" "AO090011000217" "AO090011000221" "AO090011000222" "AO090011000309" [187] "AO090011000317" "AO090011000327" "AO090011000342" "AO090011000381" "AO090011000510" "AO090011000512" [193] "AO090011000544" "AO090011000576" "AO090011000606" "AO090011000619" "AO090011000633" "AO090011000637" [199] "AO090011000685" "AO090011000716" "AO090011000720" "AO090011000723" "AO090011000724" "AO090011000734" [205] "AO090011000831" "AO090011000913" "AO090012000104" "AO090012000128" "AO090012000129" "AO090012000131" [211] "AO090012000132" "AO090012000133" "AO090012000163" "AO090012000173" "AO090012000239" "AO090012000272" [217] "AO090012000277" "AO090012000288" "AO090012000301" "AO090012000363" "AO090012000448" "AO090012000468" [223] "AO090012000492" "AO090012000508" "AO090012000515" "AO090012000516" "AO090012000521" "AO090012000550" [229] "AO090012000582" "AO090012000595" "AO090012000596" "AO090012000597" "AO090012000610" "AO090012000627" [235] "AO090012000670" "AO090012000777" "AO090012000837" "AO090012000848" "AO090012000851" "AO090012000911" [241] "AO090012000917" "AO090012000967" "AO090012000974" "AO090012000976" "AO090012000978" "AO090012000987" [247] "AO090012001016" "AO090012001025" "AO090020000024" "AO090020000037" "AO090020000043" "AO090020000091" [253] "AO090020000193" "AO090020000199" "AO090020000262" "AO090020000320" "AO090020000331" "AO090020000389" [259] "AO090020000390" "AO090020000405" "AO090020000516" "AO090020000521" "AO090020000623" "AO090020000668" [265] "AO090020000708" "AO090023000015" "AO090023000055" "AO090023000106" "AO090023000136" "AO090023000222" [271] "AO090023000258" "AO090023000259" "AO090023000273" "AO090023000432" "AO090023000470" "AO090023000472" [277] "AO090023000492" "AO090023000526" "AO090023000527" "AO090023000578" "AO090023000580" "AO090023000596" [283] "AO090023000637" "AO090023000657" "AO090023000664" "AO090023000700" "AO090023000733" "AO090023000765" [289] "AO090023000779" "AO090023000871" "AO090023001009" "AO090023t00013" "AO090026000018" "AO090026000019" [295] "AO090026000075" "AO090026000121" "AO090026000139" "AO090026000164" "AO090026000237" "AO090026000247" [301] "AO090026000248" "AO090026000254" "AO090026000338" "AO090026000411" "AO090026000430" "AO090026000435" [307] "AO090026000448" "AO090026000457" "AO090026000490" "AO090026000554" "AO090026000556" "AO090026000605" [313] "AO090026000628" "AO090026000820" "AO090026000833" "AO090038000288" "AO090038000293" "AO090038000294" [319] "AO090038000316" "AO090038000391" "AO090038000404" "AO090038000424" "AO090038000441" "AO090038000462" [325] "AO090038000467" "AO090038000535" "AO090038000603" "AO090038000622" "AO090102000004" "AO090102000063" [331] "AO090102000108" "AO090102000148" "AO090102000205" "AO090102000219" "AO090102000344" "AO090102000345" [337] "AO090102000376" "AO090102000388" "AO090102000497" "AO090102000505" "AO090102000529" "AO090102000570" [343] "AO090102000571" "AO090102000592" "AO090102000634" "AO090103000005" "AO090103000064" "AO090103000120" [349] "AO090103000213" "AO090103000362" "AO090103000396" "AO090103000417" "AO090103000456" "AO090113000073" [355] "AO090120000105" "AO090120000145" "AO090120000183" "AO090120000193" "AO090120000203" "AO090120000235" [361] "AO090120000273" "AO090120000293" "AO090120000303" "AO090120000307" "AO090120000322" "AO090120000350" [367] "AO090120000361" "AO090120000385" "AO090120000387" "AO090120000404" "AO090120000433" "AO090120000435" [373] "AO090120000479" "AO090124000046" "AO090124000077" "AO090138000021" "AO090138000024" "AO090138000025" [379] "AO090138000026" "AO090138000099" "AO090166000051" "AO090206000016" "AO090206000025" "AO090206000106" [385] "AO090206000108" "AO090206000130" "AO090701000002" "AO090701000027" "AO090701000043" "AO090701000131" [391] "AO090701000252" "AO090701000254" "AO090701000269" "AO090701000271" "AO090701000343" "AO090701000441" [397] "AO090701000517" "AO090701000588" "AO090701000613" "AO090701000622" "AO090701000647" "AO090701000657" [403] "AO090701000664" "AO090701000727" "AO090701000741" "AO090701000747" "AO090701000751" "AO090701000757" [409] "AO090701000827" "AO090701000828" -------------------------------------------------------------- No enriched GO terms. -------------------------------------------------------------- No enriched KEGG pathways. ######################################################################################################################## Cluster number 25 Number of genes in cluster 25 is: 481 Genes in cluster 25 are: [1] "AO090001000012" "AO090001000035" "AO090001000037" "AO090001000136" "AO090001000159" "AO090001000161" [7] "AO090001000164" "AO090001000165" "AO090001000166" "AO090001000167" "AO090001000194" "AO090001000225" [13] "AO090001000239" "AO090001000264" "AO090001000282" "AO090001000296" "AO090001000297" "AO090001000304" [19] "AO090001000310" "AO090001000371" "AO090001000379" "AO090001000410" "AO090001000415" "AO090001000446" [25] "AO090001000487" "AO090001000561" "AO090001000566" "AO090001000594" "AO090001000629" "AO090001000640" [31] "AO090001000657" "AO090001000663" "AO090001000687" "AO090001t00012" "AO090003000018" "AO090003000051" [37] "AO090003000066" "AO090003000067" "AO090003000124" "AO090003000147" "AO090003000206" "AO090003000207" [43] "AO090003000236" "AO090003000252" "AO090003000258" "AO090003000332" "AO090003000373" "AO090003000396" [49] "AO090003000398" "AO090003000412" "AO090003000439" "AO090003000457" "AO090003000467" "AO090003000481" [55] "AO090003000502" "AO090003000506" "AO090003000551" "AO090003000602" "AO090003000603" "AO090003000631" [61] "AO090003000644" "AO090003000652" "AO090003000722" "AO090003000723" "AO090003000737" "AO090003000770" [67] "AO090003000813" "AO090003000839" "AO090003000959" "AO090003000968" "AO090003001020" "AO090003001071" [73] "AO090003001089" "AO090003001124" "AO090003001145" "AO090003001146" "AO090003001178" "AO090003001183" [79] "AO090003001195" "AO090003001231" "AO090003001276" "AO090003001294" "AO090003001299" "AO090003001455" [85] "AO090003001468" "AO090003001484" "AO090003t00018" "AO090005000003" "AO090005000099" "AO090005000111" [91] "AO090005000165" "AO090005000214" "AO090005000216" "AO090005000218" "AO090005000227" "AO090005000238" [97] "AO090005000300" "AO090005000313" "AO090005000334" "AO090005000345" "AO090005000360" "AO090005000384" [103] "AO090005000394" "AO090005000414" "AO090005000416" "AO090005000422" "AO090005000479" "AO090005000488" [109] "AO090005000503" "AO090005000511" "AO090005000535" "AO090005000537" "AO090005000554" "AO090005000568" [115] "AO090005000597" "AO090005000598" "AO090005000627" "AO090005000630" "AO090005000631" "AO090005000649" [121] "AO090005000679" "AO090005000689" "AO090005000715" "AO090005000739" "AO090005000788" "AO090005000804" [127] "AO090005000812" "AO090005000830" "AO090005000898" "AO090005000956" "AO090005000959" "AO090005000977" [133] "AO090005001000" "AO090005001094" "AO090005001095" "AO090005001149" "AO090005001162" "AO090005001165" [139] "AO090005001209" "AO090005001271" "AO090005001296" "AO090005001301" "AO090005001312" "AO090005001337" [145] "AO090005001338" "AO090005001339" "AO090005001355" "AO090005001356" "AO090005001365" "AO090005001407" [151] "AO090005001530" "AO090005001535" "AO090005001569" "AO090005001578" "AO090005001634" "AO090005001646" [157] "AO090005001652" "AO090009000003" "AO090009000088" "AO090009000094" "AO090009000107" "AO090009000115" [163] "AO090009000153" "AO090009000289" "AO090009000304" "AO090009000339" "AO090009000344" "AO090009000355" [169] "AO090009000465" "AO090009000480" "AO090009000482" "AO090009000492" "AO090009000496" "AO090009000539" [175] "AO090009000541" "AO090009000542" "AO090009000651" "AO090010000001" "AO090010000002" "AO090010000031" [181] "AO090010000047" "AO090010000056" "AO090010000059" "AO090010000070" "AO090010000071" "AO090010000073" [187] "AO090010000079" "AO090010000135" "AO090010000155" "AO090010000156" "AO090010000160" "AO090010000166" [193] "AO090010000211" "AO090010000240" "AO090010000249" "AO090010000317" "AO090010000363" "AO090010000401" [199] "AO090010000448" "AO090010000449" "AO090010000452" "AO090010000461" "AO090010000462" "AO090010000469" [205] "AO090010000470" "AO090010000472" "AO090010000533" "AO090010000541" "AO090010000542" "AO090010000576" [211] "AO090010000681" "AO090010000707" "AO090010000708" "AO090010000717" "AO090010000755" "AO090011000059" [217] "AO090011000132" "AO090011000176" "AO090011000177" "AO090011000205" "AO090011000206" "AO090011000209" [223] "AO090011000230" "AO090011000282" "AO090011000329" "AO090011000343" "AO090011000376" "AO090011000408" [229] "AO090011000475" "AO090011000486" "AO090011000488" "AO090011000584" "AO090011000587" "AO090011000605" [235] "AO090011000607" "AO090011000617" "AO090011000670" "AO090011000679" "AO090011000688" "AO090011000699" [241] "AO090011000763" "AO090011000773" "AO090011000778" "AO090011000863" "AO090011000875" "AO090011000890" [247] "AO090012000082" "AO090012000083" "AO090012000085" "AO090012000099" "AO090012000208" "AO090012000212" [253] "AO090012000247" "AO090012000344" "AO090012000353" "AO090012000371" "AO090012000409" "AO090012000452" [259] "AO090012000481" "AO090012000494" "AO090012000498" "AO090012000500" "AO090012000511" "AO090012000551" [265] "AO090012000593" "AO090012000633" "AO090012000658" "AO090012000675" "AO090012000712" "AO090012000714" [271] "AO090012000729" "AO090012000764" "AO090012000768" "AO090012000818" "AO090012000883" "AO090012000926" [277] "AO090012000949" "AO090012000977" "AO090020000035" "AO090020000048" "AO090020000051" "AO090020000084" [283] "AO090020000107" "AO090020000119" "AO090020000202" "AO090020000221" "AO090020000256" "AO090020000375" [289] "AO090020000381" "AO090020000396" "AO090020000400" "AO090020000424" "AO090020000433" "AO090020000448" [295] "AO090020000543" "AO090020000544" "AO090020000620" "AO090020000621" "AO090020000632" "AO090020000687" [301] "AO090020000688" "AO090020000689" "AO090020000710" "AO090023000021" "AO090023000082" "AO090023000096" [307] "AO090023000139" "AO090023000200" "AO090023000203" "AO090023000237" "AO090023000241" "AO090023000260" [313] "AO090023000304" "AO090023000321" "AO090023000335" "AO090023000377" "AO090023000378" "AO090023000422" [319] "AO090023000443" "AO090023000484" "AO090023000516" "AO090023000557" "AO090023000570" "AO090023000579" [325] "AO090023000581" "AO090023000591" "AO090023000592" "AO090023000646" "AO090023000662" "AO090023000857" [331] "AO090023000889" "AO090023000893" "AO090023000909" "AO090026000065" "AO090026000212" "AO090026000213" [337] "AO090026000220" "AO090026000221" "AO090026000277" "AO090026000329" "AO090026000330" "AO090026000373" [343] "AO090026000378" "AO090026000396" "AO090026000404" "AO090026000452" "AO090026000487" "AO090026000506" [349] "AO090026000585" "AO090026000609" "AO090026000613" "AO090026000661" "AO090026000708" "AO090026000718" [355] "AO090026000764" "AO090026000787" "AO090026000807" "AO090026000832" "AO090038000019" "AO090038000020" [361] "AO090038000090" "AO090038000092" "AO090038000210" "AO090038000265" "AO090038000279" "AO090038000290" [367] "AO090038000303" "AO090038000329" "AO090038000359" "AO090038000361" "AO090038000425" "AO090038000427" [373] "AO090038000442" "AO090038000450" "AO090038000552" "AO090038000562" "AO090102000015" "AO090102000018" [379] "AO090102000038" "AO090102000056" "AO090102000085" "AO090102000107" "AO090102000109" "AO090102000119" [385] "AO090102000193" "AO090102000231" "AO090102000287" "AO090102000290" "AO090102000316" "AO090102000337" [391] "AO090102000370" "AO090102000396" "AO090102000446" "AO090102000498" "AO090102000501" "AO090102000515" [397] "AO090102000525" "AO090102000580" "AO090102000613" "AO090103000076" "AO090103000133" "AO090103000214" [403] "AO090103000217" "AO090103000220" "AO090103000342" "AO090103000353" "AO090103000356" "AO090103000383" [409] "AO090103000416" "AO090103000424" "AO090113000104" "AO090113000109" "AO090113000157" "AO090113000178" [415] "AO090113000184" "AO090120000003" "AO090120000022" "AO090120000053" "AO090120000093" "AO090120000111" [421] "AO090120000113" "AO090120000122" "AO090120000200" "AO090120000256" "AO090120000258" "AO090120000297" [427] "AO090120000321" "AO090120000369" "AO090120000378" "AO090120000384" "AO090120000442" "AO090120000447" [433] "AO090120000484" "AO090120000499" "AO090120000504" "AO090138000023" "AO090138000058" "AO090138000059" [439] "AO090138000060" "AO090138000084" "AO090138000117" "AO090138000155" "AO090138000156" "AO090138000157" [445] "AO090138000190" "AO090166000026" "AO090166000047" "AO090166000059" "AO090166000087" "AO090166000098" [451] "AO090206000017" "AO090206000065" "AO090701000063" "AO090701000069" "AO090701000127" "AO090701000193" [457] "AO090701000219" "AO090701000268" "AO090701000273" "AO090701000310" "AO090701000322" "AO090701000328" [463] "AO090701000401" "AO090701000424" "AO090701000429" "AO090701000480" "AO090701000494" "AO090701000550" [469] "AO090701000554" "AO090701000699" "AO090701000706" "AO090701000710" "AO090701000749" "AO090701000756" [475] "AO090701000773" "AO090701000822" "AO090701000844" "AO090701000851" "AO090701000876" "AO090701000881" [481] "AO090701000895" -------------------------------------------------------------- No enriched GO terms. -------------------------------------------------------------- Number of enriched KEGG pathways: 1 KEGG pathways are: [1] "Biosynthesis of cofactors - Aspergillus oryzae" ################################################################################################################################################################################################################################################ ################################################################################################################################################################################################################################################ ################################################################################################################################################################################################################################################ Acidic compounds – Levulinic acid & Ferulic acid pvalueCutoff= 0.01 , pAdjustMethod= BH , qvalueCutoff= 0.01 ######################################################################################################################## Cluster number 1 Number of genes in cluster 1 is: 269 Genes in cluster 1 are: [1] "AO090001000102" "AO090001000244" "AO090001000262" "AO090001000283" [5] "AO090001000284" "AO090001000326" "AO090001000354" "AO090001000359" [9] "AO090001000373" "AO090001000387" "AO090001000450" "AO090001000463" [13] "AO090001000464" "AO090001000550" "AO090001000567" "AO090001000717" [17] "AO090003000022" "AO090003000079" "AO090003000138" "AO090003000139" [21] "AO090003000159" "AO090003000174" "AO090003000208" "AO090003000210" [25] "AO090003000213" "AO090003000214" "AO090003000218" "AO090003000273" [29] "AO090003000323" "AO090003000430" "AO090003000459" "AO090003000476" [33] "AO090003000515" "AO090003000526" "AO090003000527" "AO090003000677" [37] "AO090003000730" "AO090003000971" "AO090003000989" "AO090003000990" [41] "AO090003001003" "AO090003001017" "AO090003001018" "AO090003001122" [45] "AO090003001137" "AO090003001209" "AO090003001277" "AO090003001295" [49] "AO090003001305" "AO090003001340" "AO090003001407" "AO090005000126" [53] "AO090005000228" "AO090005000235" "AO090005000295" "AO090005000359" [57] "AO090005000472" "AO090005000494" "AO090005000527" "AO090005000562" [61] "AO090005000577" "AO090005000578" "AO090005000579" "AO090005000708" [65] "AO090005000733" "AO090005000820" "AO090005000826" "AO090005000921" [69] "AO090005001047" "AO090005001085" "AO090005001089" "AO090005001128" [73] "AO090005001242" "AO090005001248" "AO090005001254" "AO090005001469" [77] "AO090005001494" "AO090005001549" "AO090005001555" "AO090009000022" [81] "AO090009000073" "AO090009000075" "AO090009000183" "AO090009000236" [85] "AO090009000298" "AO090009000320" "AO090009000354" "AO090009000356" [89] "AO090009000384" "AO090009000389" "AO090009000390" "AO090009000584" [93] "AO090009000628" "AO090010000019" "AO090010000025" "AO090010000029" [97] "AO090010000105" "AO090010000188" "AO090010000210" "AO090010000310" [101] "AO090010000320" "AO090010000500" "AO090010000515" "AO090010000603" [105] "AO090010000635" "AO090010000640" "AO090010000727" "AO090011000101" [109] "AO090011000107" "AO090011000156" "AO090011000168" "AO090011000236" [113] "AO090011000300" "AO090011000326" "AO090011000346" "AO090011000438" [117] "AO090011000483" "AO090011000592" "AO090011000650" "AO090011000743" [121] "AO090011000801" "AO090011000895" "AO090012000006" "AO090012000150" [125] "AO090012000154" "AO090012000165" "AO090012000167" "AO090012000185" [129] "AO090012000193" "AO090012000259" "AO090012000267" "AO090012000279" [133] "AO090012000292" "AO090012000294" "AO090012000429" "AO090012000445" [137] "AO090012000560" "AO090012000579" "AO090012000601" "AO090012000642" [141] "AO090012000655" "AO090012000674" "AO090012000708" "AO090012000762" [145] "AO090012000766" "AO090012000771" "AO090012000821" "AO090012000872" [149] "AO090012000901" "AO090012000904" "AO090020000068" "AO090020000207" [153] "AO090020000219" "AO090020000251" "AO090020000252" "AO090020000261" [157] "AO090020000293" "AO090020000341" "AO090020000368" "AO090020000380" [161] "AO090020000436" "AO090020000457" "AO090020000461" "AO090020000494" [165] "AO090020000499" "AO090020000509" "AO090020000560" "AO090020000561" [169] "AO090020000597" "AO090023000012" "AO090023000036" "AO090023000065" [173] "AO090023000117" "AO090023000142" "AO090023000172" "AO090023000181" [177] "AO090023000186" "AO090023000204" "AO090023000473" "AO090023000488" [181] "AO090023000491" "AO090023000512" "AO090023000524" "AO090023000561" [185] "AO090023000577" "AO090023000605" "AO090023000711" "AO090023000744" [189] "AO090023000842" "AO090026000104" "AO090026000110" "AO090026000157" [193] "AO090026000189" "AO090026000202" "AO090026000214" "AO090026000263" [197] "AO090026000266" "AO090026000419" "AO090026000425" "AO090026000465" [201] "AO090026000523" "AO090026000622" "AO090026000629" "AO090026000639" [205] "AO090026000799" "AO090038000121" "AO090038000138" "AO090038000144" [209] "AO090038000197" "AO090038000345" "AO090038000346" "AO090038000439" [213] "AO090038000457" "AO090038000519" "AO090038000578" "AO090038000624" [217] "AO090102000058" "AO090102000125" "AO090102000137" "AO090102000139" [221] "AO090102000224" "AO090102000251" "AO090102000297" "AO090102000419" [225] "AO090103000020" "AO090103000228" "AO090103000296" "AO090103000343" [229] "AO090103000378" "AO090103000445" "AO090103000446" "AO090103t00011" [233] "AO090113000013" "AO090113000136" "AO090113000139" "AO090113000144" [237] "AO090113000158" "AO090113000196" "AO090120000069" "AO090120000127" [241] "AO090120000165" "AO090120000244" "AO090120000251" "AO090120000334" [245] "AO090120000443" "AO090124000071" "AO090138000045" "AO090138000141" [249] "AO090138000184" "AO090166000090" "AO090206000094" "AO090206000119" [253] "AO090308000009" "AO090672000001" "AO090701000019" "AO090701000325" [257] "AO090701000339" "AO090701000372" "AO090701000381" "AO090701000389" [261] "AO090701000400" "AO090701000444" "AO090701000548" "AO090701000592" [265] "AO090701000652" "AO090701000698" "AO090701000716" "AO090701000777" [269] "AO090701000854" -------------------------------------------------------------- Number of enriched GO terms: 2 GO terms are: [1] "oxidoreductase activity, acting on single donors with incorporation of molecular oxygen" [2] "oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen" Parent terms retrieved using org.Sc.sgd.db (S. cerevisiae) No Biological process parent terms found. Molecular function parent terms of GO terms are: term GO:0016701 "oxidoreductase activity, acting on single donors with incorporation of molecular oxygen" GO:0016702 "oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen" parentTerm GO:0016701 "oxidoreductase activity, acting on single donors with incorporation of molecular oxygen" GO:0016702 "oxidoreductase activity, acting on single donors with incorporation of molecular oxygen" Number of Molecular function parent terms: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen 2 No Cellular component parent terms found. Number of GO terms for which NO parent term was found: 0 -------------------------------------------------------------- No enriched KEGG pathways. ######################################################################################################################## Cluster number 2 Number of genes in cluster 2 is: 189 Genes in cluster 2 are: [1] "AO090001000075" "AO090001000203" "AO090001000324" "AO090001000325" [5] "AO090001000363" "AO090001000470" "AO090001000582" "AO090001000611" [9] "AO090001000702" "AO090003000031" "AO090003000164" "AO090003000168" [13] "AO090003000209" "AO090003000247" "AO090003000441" "AO090003000445" [17] "AO090003000574" "AO090003000643" "AO090003000674" "AO090003000978" [21] "AO090003001021" "AO090003001120" "AO090003001154" "AO090003001223" [25] "AO090003001319" "AO090003001541" "AO090005000016" "AO090005000070" [29] "AO090005000137" "AO090005000232" "AO090005000280" "AO090005000475" [33] "AO090005000539" "AO090005000580" "AO090005000581" "AO090005000778" [37] "AO090005000798" "AO090005000829" "AO090005000884" "AO090005000925" [41] "AO090005000961" "AO090005001027" "AO090005001033" "AO090005001038" [45] "AO090005001066" "AO090005001111" "AO090005001181" "AO090005001214" [49] "AO090005001266" "AO090005001449" "AO090005001547" "AO090005001552" [53] "AO090009000347" "AO090009000467" "AO090009000528" "AO090009000548" [57] "AO090009000701" "AO090010000010" "AO090010000108" "AO090010000140" [61] "AO090010000330" "AO090010000365" "AO090010000383" "AO090010000407" [65] "AO090010000426" "AO090010000495" "AO090010000552" "AO090010000591" [69] "AO090010000678" "AO090010000712" "AO090010000718" "AO090010000729" [73] "AO090010000732" "AO090011000005" "AO090011000179" "AO090011000229" [77] "AO090011000243" "AO090011000443" "AO090011000444" "AO090011000540" [81] "AO090011000642" "AO090011000689" "AO090011000858" "AO090011000878" [85] "AO090011000897" "AO090012000117" "AO090012000161" "AO090012000171" [89] "AO090012000206" "AO090012000428" "AO090012000715" "AO090012000726" [93] "AO090012000749" "AO090012000759" "AO090012000760" "AO090012000803" [97] "AO090012000820" "AO090012000833" "AO090012000835" "AO090012001003" [101] "AO090012001008" "AO090020000015" "AO090020000036" "AO090020000050" [105] "AO090020000148" "AO090020000154" "AO090020000155" "AO090020000210" [109] "AO090020000348" "AO090020000515" "AO090020000590" "AO090020000658" [113] "AO090023000043" "AO090023000056" "AO090023000081" "AO090023000216" [117] "AO090023000252" "AO090023000672" "AO090023000907" "AO090023000947" [121] "AO090026000038" "AO090026000045" "AO090026000091" "AO090026000132" [125] "AO090026000182" "AO090026000249" "AO090026000341" "AO090026000363" [129] "AO090026000403" "AO090026000695" "AO090026000734" "AO090026000788" [133] "AO090026000824" "AO090038000075" "AO090038000093" "AO090038000365" [137] "AO090038000444" "AO090038000445" "AO090038000542" "AO090038000622" [141] "AO090102000159" "AO090102000168" "AO090102000176" "AO090102000268" [145] "AO090102000406" "AO090102000431" "AO090102000478" "AO090102000584" [149] "AO090102000598" "AO090103000062" "AO090103000063" "AO090103000117" [153] "AO090103000158" "AO090103000388" "AO090103000459" "AO090113000015" [157] "AO090113000063" "AO090113000067" "AO090113000082" "AO090113000086" [161] "AO090113000105" "AO090113000133" "AO090113000156" "AO090120000115" [165] "AO090120000238" "AO090120000376" "AO090120000418" "AO090120000426" [169] "AO090120000429" "AO090120000444" "AO090138000044" "AO090138000049" [173] "AO090138000118" "AO090166000085" "AO090206000029" "AO090206000091" [177] "AO090206000121" "AO090308000002" "AO090701000024" "AO090701000046" [181] "AO090701000184" "AO090701000186" "AO090701000233" "AO090701000476" [185] "AO090701000619" "AO090701000662" "AO090701000826" "AO090701000867" [189] "AO090701000872" -------------------------------------------------------------- No enriched GO terms. -------------------------------------------------------------- No enriched KEGG pathways. ######################################################################################################################## Cluster number 3 Number of genes in cluster 3 is: 305 Genes in cluster 3 are: [1] "AO090001000092" "AO090001000138" "AO090001000195" "AO090001000255" [5] "AO090001000268" "AO090001000345" "AO090001000350" "AO090001000467" [9] "AO090001000477" "AO090001000493" "AO090001000512" "AO090001000545" [13] "AO090001000627" "AO090001000628" "AO090001000646" "AO090001000647" [17] "AO090001t00012" "AO090003000042" "AO090003000161" "AO090003000191" [21] "AO090003000201" "AO090003000203" "AO090003000249" "AO090003000250" [25] "AO090003000264" "AO090003000280" "AO090003000318" "AO090003000321" [29] "AO090003000331" "AO090003000350" "AO090003000365" "AO090003000368" [33] "AO090003000417" "AO090003000433" "AO090003000447" "AO090003000482" [37] "AO090003000483" "AO090003000576" "AO090003000585" "AO090003000673" [41] "AO090003000898" "AO090003000922" "AO090003001049" "AO090003001064" [45] "AO090003001084" "AO090003001177" "AO090003001200" "AO090003001201" [49] "AO090003001204" "AO090003001298" "AO090003001309" "AO090003001320" [53] "AO090003001345" "AO090003001467" "AO090003001521" "AO090003001522" [57] "AO090003001552" "AO090005000004" "AO090005000151" "AO090005000152" [61] "AO090005000311" "AO090005000333" "AO090005000474" "AO090005000482" [65] "AO090005000524" "AO090005000551" "AO090005000592" "AO090005000603" [69] "AO090005000637" "AO090005000752" "AO090005000753" "AO090005000796" [73] "AO090005000810" "AO090005000834" "AO090005000865" "AO090005000897" [77] "AO090005000918" "AO090005001032" "AO090005001087" "AO090005001100" [81] "AO090005001179" "AO090005001249" "AO090005001284" "AO090005001313" [85] "AO090005001383" "AO090005001424" "AO090005001484" "AO090009000087" [89] "AO090009000088" "AO090009000102" "AO090009000133" "AO090009000182" [93] "AO090009000210" "AO090009000219" "AO090009000231" "AO090009000266" [97] "AO090009000360" "AO090009000373" "AO090009000374" "AO090009000396" [101] "AO090009000406" "AO090009000437" "AO090009000483" "AO090009000488" [105] "AO090009000515" "AO090009000520" "AO090009000538" "AO090009000562" [109] "AO090009000570" "AO090009000582" "AO090009000637" "AO090010000013" [113] "AO090010000028" "AO090010000064" "AO090010000339" "AO090010000354" [117] "AO090010000366" "AO090010000368" "AO090010000414" "AO090010000496" [121] "AO090010000516" "AO090010000517" "AO090010000652" "AO090010000689" [125] "AO090010000722" "AO090010000728" "AO090011000103" "AO090011000222" [129] "AO090011000317" "AO090011000322" "AO090011000341" "AO090011000347" [133] "AO090011000431" "AO090011000510" "AO090011000512" "AO090011000544" [137] "AO090011000586" "AO090011000619" "AO090011000690" "AO090011000794" [141] "AO090011000805" "AO090011000827" "AO090011000892" "AO090011000921" [145] "AO090012000007" "AO090012000046" "AO090012000049" "AO090012000084" [149] "AO090012000240" "AO090012000246" "AO090012000342" "AO090012000447" [153] "AO090012000508" "AO090012000522" "AO090012000578" "AO090012000596" [157] "AO090012000600" "AO090012000644" "AO090012000682" "AO090012000683" [161] "AO090012000753" "AO090012000846" "AO090012000918" "AO090012000987" [165] "AO090012001027" "AO090020000009" "AO090020000056" "AO090020000183" [169] "AO090020000190" "AO090020000200" "AO090020000218" "AO090020000226" [173] "AO090020000258" "AO090020000259" "AO090020000329" "AO090020000383" [177] "AO090020000423" "AO090020000434" "AO090020000517" "AO090020000537" [181] "AO090020000562" "AO090020000692" "AO090023000011" "AO090023000016" [185] "AO090023000035" "AO090023000038" "AO090023000086" "AO090023000106" [189] "AO090023000259" "AO090023000354" "AO090023000396" "AO090023000470" [193] "AO090023000481" "AO090023000495" "AO090023000580" "AO090023000601" [197] "AO090023000622" "AO090023000633" "AO090023000647" "AO090023000719" [201] "AO090023000833" "AO090023000866" "AO090023000948" "AO090023001009" [205] "AO090026000012" "AO090026000017" "AO090026000046" "AO090026000082" [209] "AO090026000085" "AO090026000184" "AO090026000190" "AO090026000230" [213] "AO090026000282" "AO090026000285" "AO090026000457" "AO090026000480" [217] "AO090026000501" "AO090026000660" "AO090026000791" "AO090026000797" [221] "AO090038000088" "AO090038000218" "AO090038000274" "AO090038000294" [225] "AO090038000316" "AO090038000318" "AO090038000362" "AO090038000364" [229] "AO090038000396" "AO090038000459" "AO090038000541" "AO090038000555" [233] "AO090038000556" "AO090038000557" "AO090038000582" "AO090038000621" [237] "AO090102000003" "AO090102000050" "AO090102000098" "AO090102000133" [241] "AO090102000169" "AO090102000170" "AO090102000231" "AO090102000257" [245] "AO090102000261" "AO090102000272" "AO090102000277" "AO090102000304" [249] "AO090102000308" "AO090102000344" "AO090102000351" "AO090102000529" [253] "AO090102000538" "AO090102000621" "AO090102000622" "AO090102000633" [257] "AO090102000637" "AO090103000023" "AO090103000030" "AO090103000113" [261] "AO090103000119" "AO090103000150" "AO090103000213" "AO090103000389" [265] "AO090103000466" "AO090103000487" "AO090113000002" "AO090113000062" [269] "AO090113000134" "AO090120000002" "AO090120000017" "AO090120000155" [273] "AO090120000164" "AO090120000302" "AO090120000303" "AO090120000305" [277] "AO090120000315" "AO090120000317" "AO090120000409" "AO090138000005" [281] "AO090138000021" "AO090138000076" "AO090138000098" "AO090138000125" [285] "AO090138000126" "AO090138000140" "AO090138000168" "AO090138000176" [289] "AO090166000046" "AO090166000049" "AO090701000115" "AO090701000157" [293] "AO090701000350" "AO090701000437" "AO090701000478" "AO090701000493" [297] "AO090701000622" "AO090701000644" "AO090701000648" "AO090701000660" [301] "AO090701000734" "AO090701000736" "AO090701000747" "AO090701000788" [305] "AO090701000841" -------------------------------------------------------------- Number of enriched GO terms: 5 GO terms are: [1] "EC:2.7.13.3" [2] "EC:2.7.3" [3] "phosphorelay sensor kinase activity" [4] "protein histidine kinase activity" [5] "phosphotransferase activity, nitrogenous group as acceptor" Parent terms retrieved using org.Sc.sgd.db (S. cerevisiae) No Biological process parent terms found. Molecular function parent terms of GO terms are: term GO:0000155 "phosphorelay sensor kinase activity" GO:0016775 "phosphotransferase activity, nitrogenous group as acceptor" GO:0004673 "protein histidine kinase activity" parentTerm GO:0000155 "phosphorelay sensor kinase activity" GO:0016775 "phosphorelay sensor kinase activity" GO:0004673 "phosphorelay sensor kinase activity" Number of Molecular function parent terms: phosphorelay sensor kinase activity 3 No Cellular component parent terms found. Number of GO terms for which NO parent term was found: 2 No parent term was found for the following GO terms: [1] "EC:2.7.13.3" "EC:2.7.3" -------------------------------------------------------------- No enriched KEGG pathways. ######################################################################################################################## Cluster number 4 Number of genes in cluster 4 is: 189 Genes in cluster 4 are: [1] "AO090001000176" "AO090001000277" "AO090001000307" "AO090001000348" [5] "AO090001000365" "AO090001000382" "AO090001000393" "AO090001000422" [9] "AO090001000438" "AO090001000593" "AO090001000678" "AO090001000700" [13] "AO090003000024" "AO090003000093" "AO090003000190" "AO090003000237" [17] "AO090003000242" "AO090003000278" "AO090003000324" "AO090003000325" [21] "AO090003000346" "AO090003000429" "AO090003000593" "AO090003000757" [25] "AO090003000758" "AO090003000764" "AO090003000896" "AO090003000935" [29] "AO090003000946" "AO090003000961" "AO090003001013" "AO090003001121" [33] "AO090003001224" "AO090003001270" "AO090003001272" "AO090003001466" [37] "AO090003001498" "AO090003001535" "AO090005000139" "AO090005000236" [41] "AO090005000343" "AO090005000356" "AO090005000357" "AO090005000358" [45] "AO090005000705" "AO090005000782" "AO090005000803" "AO090005000864" [49] "AO090005000872" "AO090005000937" "AO090005001118" "AO090005001182" [53] "AO090005001268" "AO090005001445" "AO090005001483" "AO090005001486" [57] "AO090005001622" "AO090009000024" "AO090009000114" "AO090009000129" [61] "AO090009000130" "AO090009000197" "AO090009000248" "AO090009000299" [65] "AO090009000308" "AO090009000336" "AO090009000476" "AO090009000504" [69] "AO090009000709" "AO090010000018" "AO090010000164" "AO090010000165" [73] "AO090010000194" "AO090010000250" "AO090010000279" "AO090010000477" [77] "AO090010000602" "AO090010000641" "AO090010000752" "AO090011000094" [81] "AO090011000155" "AO090011000262" "AO090011000498" "AO090011000765" [85] "AO090011000766" "AO090011000884" "AO090011000885" "AO090011000948" [89] "AO090012000124" "AO090012000244" "AO090012000253" "AO090012000254" [93] "AO090012000293" "AO090012000299" "AO090012000300" "AO090012000304" [97] "AO090012000378" "AO090012000420" "AO090012000457" "AO090012000536" [101] "AO090012000537" "AO090012000550" "AO090012000557" "AO090012000657" [105] "AO090012000659" "AO090012000660" "AO090012000725" "AO090012000787" [109] "AO090012000908" "AO090012000922" "AO090012001019" "AO090020000239" [113] "AO090020000310" "AO090020000392" "AO090020000458" "AO090020000496" [117] "AO090020000502" "AO090020000503" "AO090023000039" "AO090023000074" [121] "AO090023000249" "AO090023000262" "AO090023000391" "AO090023000482" [125] "AO090023000501" "AO090023000656" "AO090023000688" "AO090023000692" [129] "AO090023000761" "AO090023000775" "AO090023000872" "AO090023000985" [133] "AO090026000015" "AO090026000016" "AO090026000185" "AO090026000246" [137] "AO090026000250" "AO090026000307" "AO090026000357" "AO090026000392" [141] "AO090026000697" "AO090026000837" "AO090038000040" "AO090038000115" [145] "AO090038000145" "AO090038000167" "AO090038000221" "AO090038000302" [149] "AO090038000328" "AO090038000390" "AO090038000432" "AO090038000539" [153] "AO090038000574" "AO090038000589" "AO090038000598" "AO090038000599" [157] "AO090102000002" "AO090102000005" "AO090102000016" "AO090102000166" [161] "AO090102000282" "AO090102000486" "AO090102000630" "AO090103000022" [165] "AO090103000042" "AO090103000415" "AO090103000486" "AO090113000055" [169] "AO090113000116" "AO090120000028" "AO090120000103" "AO090120000135" [173] "AO090120000324" "AO090120000416" "AO090138000105" "AO090138000106" [177] "AO090206000024" "AO090206000053" "AO090206000078" "AO090206000090" [181] "AO090206000118" "AO090701000015" "AO090701000109" "AO090701000407" [185] "AO090701000442" "AO090701000546" "AO090701000765" "AO090701000830" [189] "AO090701000831" -------------------------------------------------------------- No enriched GO terms. -------------------------------------------------------------- No enriched KEGG pathways. ######################################################################################################################## Cluster number 5 Number of genes in cluster 5 is: 359 Genes in cluster 5 are: [1] "AO090001000012" "AO090001000224" "AO090001000337" "AO090001000356" [5] "AO090001000364" "AO090001000375" "AO090001000376" "AO090001000410" [9] "AO090001000446" "AO090001000480" "AO090001000481" "AO090001000489" [13] "AO090001000500" "AO090001000525" "AO090001000553" "AO090001000616" [17] "AO090001000617" "AO090001000641" "AO090001000675" "AO090001000738" [21] "AO090003000046" "AO090003000055" "AO090003000061" "AO090003000070" [25] "AO090003000141" "AO090003000180" "AO090003000241" "AO090003000288" [29] "AO090003000392" "AO090003000415" "AO090003000423" "AO090003000424" [33] "AO090003000438" "AO090003000513" "AO090003000514" "AO090003000610" [37] "AO090003000616" "AO090003000636" "AO090003000666" "AO090003000689" [41] "AO090003000722" "AO090003000725" "AO090003000906" "AO090003000921" [45] "AO090003000956" "AO090003000984" "AO090003001019" "AO090003001035" [49] "AO090003001065" "AO090003001115" "AO090003001192" "AO090003001207" [53] "AO090003001232" "AO090003001250" "AO090003001313" "AO090003001322" [57] "AO090003001323" "AO090003001350" "AO090003001353" "AO090003001356" [61] "AO090003001484" "AO090003001497" "AO090003001523" "AO090003t00018" [65] "AO090005000085" "AO090005000091" "AO090005000100" "AO090005000111" [69] "AO090005000226" "AO090005000278" "AO090005000313" "AO090005000405" [73] "AO090005000428" "AO090005000436" "AO090005000438" "AO090005000456" [77] "AO090005000575" "AO090005000619" "AO090005000682" "AO090005000689" [81] "AO090005000706" "AO090005000728" "AO090005000729" "AO090005000749" [85] "AO090005000886" "AO090005000888" "AO090005000996" "AO090005001021" [89] "AO090005001059" "AO090005001095" "AO090005001107" "AO090005001117" [93] "AO090005001121" "AO090005001272" "AO090005001280" "AO090005001300" [97] "AO090005001312" "AO090005001361" "AO090005001431" "AO090005001442" [101] "AO090005001450" "AO090005001451" "AO090005001503" "AO090005001558" [105] "AO090005001620" "AO090009000002" "AO090009000117" "AO090009000121" [109] "AO090009000188" "AO090009000200" "AO090009000203" "AO090009000212" [113] "AO090009000215" "AO090009000255" "AO090009000256" "AO090009000267" [117] "AO090009000281" "AO090009000294" "AO090009000309" "AO090009000310" [121] "AO090009000362" "AO090009000436" "AO090009000472" "AO090009000484" [125] "AO090009000493" "AO090009000496" "AO090009000519" "AO090009000634" [129] "AO090009000644" "AO090009000678" "AO090009000679" "AO090010000032" [133] "AO090010000061" "AO090010000106" "AO090010000135" "AO090010000224" [137] "AO090010000313" "AO090010000363" "AO090010000443" "AO090010000444" [141] "AO090010000463" "AO090010000466" "AO090010000472" "AO090010000475" [145] "AO090010000476" "AO090010000481" "AO090010000482" "AO090010000574" [149] "AO090010000699" "AO090010000753" "AO090010000754" "AO090010000755" [153] "AO090011000149" "AO090011000203" "AO090011000282" "AO090011000324" [157] "AO090011000351" "AO090011000357" "AO090011000358" "AO090011000376" [161] "AO090011000456" "AO090011000484" "AO090011000504" "AO090011000506" [165] "AO090011000572" "AO090011000588" "AO090011000648" "AO090011000651" [169] "AO090011000659" "AO090011000660" "AO090011000679" "AO090011000715" [173] "AO090011000768" "AO090011000774" "AO090011000780" "AO090011000829" [177] "AO090011000876" "AO090011000931" "AO090011000933" "AO090011000934" [181] "AO090012000051" "AO090012000174" "AO090012000228" "AO090012000271" [185] "AO090012000287" "AO090012000288" "AO090012000397" "AO090012000402" [189] "AO090012000414" "AO090012000415" "AO090012000436" "AO090012000479" [193] "AO090012000483" "AO090012000493" "AO090012000533" "AO090012000586" [197] "AO090012000604" "AO090012000652" "AO090012000783" "AO090012000802" [201] "AO090012000877" "AO090012000927" "AO090012000950" "AO090012000983" [205] "AO090012000986" "AO090012000998" "AO090012001004" "AO090020000041" [209] "AO090020000109" "AO090020000116" "AO090020000119" "AO090020000131" [213] "AO090020000180" "AO090020000197" "AO090020000241" "AO090020000344" [217] "AO090020000489" "AO090020000491" "AO090020000501" "AO090020000520" [221] "AO090020000543" "AO090020000618" "AO090020000622" "AO090020000634" [225] "AO090020000667" "AO090023000133" "AO090023000205" "AO090023000206" [229] "AO090023000241" "AO090023000258" "AO090023000325" "AO090023000327" [233] "AO090023000331" "AO090023000422" "AO090023000520" "AO090023000632" [237] "AO090023000678" "AO090023000679" "AO090023000680" "AO090023000689" [241] "AO090023000755" "AO090023000756" "AO090023000757" "AO090023000801" [245] "AO090023000841" "AO090023000854" "AO090023000863" "AO090023000870" [249] "AO090023000910" "AO090023000912" "AO090023000918" "AO090023000927" [253] "AO090023000949" "AO090023000956" "AO090023000968" "AO090023001002" [257] "AO090023t00021" "AO090026000066" "AO090026000134" "AO090026000198" [261] "AO090026000267" "AO090026000271" "AO090026000393" "AO090026000450" [265] "AO090026000491" "AO090026000603" "AO090026000621" "AO090026000651" [269] "AO090026000663" "AO090026000689" "AO090026000705" "AO090026000789" [273] "AO090026000794" "AO090026000842" "AO090038000081" "AO090038000086" [277] "AO090038000281" "AO090038000300" "AO090038000303" "AO090038000395" [281] "AO090038000410" "AO090038000427" "AO090038000435" "AO090038000450" [285] "AO090038000596" "AO090038000615" "AO090038000623" "AO090102000018" [289] "AO090102000065" "AO090102000085" "AO090102000119" "AO090102000127" [293] "AO090102000173" "AO090102000220" "AO090102000291" "AO090102000339" [297] "AO090102000368" "AO090102000426" "AO090102000476" "AO090102000499" [301] "AO090102000517" "AO090102000525" "AO090102000597" "AO090102000626" [305] "AO090102000627" "AO090103000008" "AO090103000075" "AO090103000217" [309] "AO090103000273" "AO090103000342" "AO090103000425" "AO090103000454" [313] "AO090113000001" "AO090113000054" "AO090120000053" "AO090120000109" [317] "AO090120000110" "AO090120000129" "AO090120000137" "AO090120000186" [321] "AO090120000210" "AO090120000279" "AO090120000281" "AO090120000375" [325] "AO090124000037" "AO090124000079" "AO090124000083" "AO090138000033" [329] "AO090138000042" "AO090138000093" "AO090138000144" "AO090166000070" [333] "AO090206000001" "AO090206000002" "AO090206000077" "AO090206000130" [337] "AO090206000131" "AO090206r00002" "AO090701000047" "AO090701000057" [341] "AO090701000069" "AO090701000078" "AO090701000127" "AO090701000172" [345] "AO090701000235" "AO090701000318" "AO090701000376" "AO090701000432" [349] "AO090701000433" "AO090701000558" "AO090701000685" "AO090701000689" [353] "AO090701000705" "AO090701000738" "AO090701000743" "AO090701000749" [357] "AO090701000751" "AO090701000758" "AO090701000829" -------------------------------------------------------------- Number of enriched GO terms: 144 GO terms are: [1] "mitochondrion" [2] "mitochondrial envelope" [3] "mitochondrial membrane" [4] "organelle envelope" [5] "envelope" [6] "organelle inner membrane" [7] "mitochondrial inner membrane" [8] "generation of precursor metabolites and energy" [9] "mitochondrial protein-containing complex" [10] "mitochondrial matrix" [11] "amide biosynthetic process" [12] "amide metabolic process" [13] "oxoacid metabolic process" [14] "carboxylic acid metabolic process" [15] "organic acid metabolic process" [16] "pyruvate metabolic process" [17] "respirasome" [18] "ATP metabolic process" [19] "ADP metabolic process" [20] "purine nucleoside triphosphate metabolic process" [21] "purine ribonucleoside triphosphate metabolic process" [22] "ribonucleoside triphosphate metabolic process" [23] "electron transfer activity" [24] "purine nucleoside diphosphate metabolic process" [25] "purine ribonucleoside diphosphate metabolic process" [26] "nicotinamide nucleotide metabolic process" [27] "pyridine nucleotide metabolic process" [28] "peptide biosynthetic process" [29] "ribonucleoside diphosphate metabolic process" [30] "oxidoreduction-driven active transmembrane transporter activity" [31] "nucleoside diphosphate metabolic process" [32] "nucleoside triphosphate metabolic process" [33] "translation" [34] "peptide metabolic process" [35] "small molecule biosynthetic process" [36] "cellular respiration" [37] "energy derivation by oxidation of organic compounds" [38] "pyridine-containing compound metabolic process" [39] "purine-containing compound metabolic process" [40] "purine-containing compound catabolic process" [41] "purine nucleotide metabolic process" [42] "glycolytic process" [43] "nucleoside diphosphate catabolic process" [44] "purine nucleoside diphosphate catabolic process" [45] "purine ribonucleoside diphosphate catabolic process" [46] "ribonucleoside diphosphate catabolic process" [47] "pyridine nucleotide catabolic process" [48] "ADP catabolic process" [49] "pyridine-containing compound catabolic process" [50] "respiratory chain complex" [51] "inner mitochondrial membrane protein complex" [52] "aerobic respiration" [53] "purine nucleotide catabolic process" [54] "purine ribonucleotide catabolic process" [55] "ribonucleotide catabolic process" [56] "monocarboxylic acid metabolic process" [57] "nucleotide catabolic process" [58] "nucleoside phosphate catabolic process" [59] "mitochondrion organization" [60] "purine ribonucleotide metabolic process" [61] "oxidoreductase complex" [62] "ribosome" [63] "nucleotide metabolic process" [64] "nucleoside phosphate metabolic process" [65] "ribonucleotide metabolic process" [66] "mitochondrial respiratory chain complex assembly" [67] "ribose phosphate metabolic process" [68] "hexose metabolic process" [69] "organophosphate catabolic process" [70] "mitochondrial respirasome" [71] "ubiquinone metabolic process" [72] "ubiquinone biosynthetic process" [73] "quinone metabolic process" [74] "quinone biosynthetic process" [75] "mitochondrial transmembrane transport" [76] "organic cyclic compound catabolic process" [77] "electron transport chain" [78] "heterocycle catabolic process" [79] "organophosphate metabolic process" [80] "oxidative phosphorylation" [81] "organellar ribosome" [82] "mitochondrial ribosome" [83] "monosaccharide metabolic process" [84] "cytochrome complex assembly" [85] "ribosomal subunit" [86] "mitochondrial transport" [87] "cellular nitrogen compound catabolic process" [88] "lipid biosynthetic process" [89] "structural constituent of ribosome" [90] "cellular catabolic process" [91] "aromatic compound catabolic process" [92] "glucose metabolic process" [93] "carboxylic acid biosynthetic process" [94] "nucleobase-containing small molecule metabolic process" [95] "organic acid biosynthetic process" [96] "nucleobase-containing compound catabolic process" [97] "transmembrane transporter complex" [98] "carbohydrate derivative catabolic process" [99] "steroid biosynthetic process" [100] "aerobic electron transport chain" [101] "mitochondrial ATP synthesis coupled electron transport" [102] "tricarboxylic acid cycle" [103] "organonitrogen compound catabolic process" [104] "dicarboxylic acid metabolic process" [105] "membrane-enclosed lumen" [106] "organelle lumen" [107] "intracellular organelle lumen" [108] "serine family amino acid metabolic process" [109] "nucleoid" [110] "mitochondrial nucleoid" [111] "ATP synthesis coupled electron transport" [112] "sulfur compound biosynthetic process" [113] "purine nucleotide biosynthetic process" [114] "sterol biosynthetic process" [115] "NADH dehydrogenase activity" [116] "folic acid-containing compound biosynthetic process" [117] "dicarboxylic acid biosynthetic process" [118] "ribonucleoprotein complex" [119] "translational initiation" [120] "steroid metabolic process" [121] "structural molecule activity" [122] "respiratory electron transport chain" [123] "transporter complex" [124] "membrane protein complex" [125] "small ribosomal subunit" [126] "gluconeogenesis" [127] "hexose biosynthetic process" [128] "pteridine-containing compound biosynthetic process" [129] "monosaccharide biosynthetic process" [130] "sterol metabolic process" [131] "protein maturation" [132] "purine-containing compound biosynthetic process" [133] "cytoplasmic translational initiation" [134] "primary active transmembrane transporter activity" [135] "porphyrin-containing compound metabolic process" [136] "porphyrin-containing compound biosynthetic process" [137] "heme biosynthetic process" [138] "tetrapyrrole metabolic process" [139] "tetrapyrrole biosynthetic process" [140] "eukaryotic 48S preinitiation complex" [141] "heme metabolic process" [142] "GO:0048037" [143] "carbohydrate biosynthetic process" [144] "protein targeting to mitochondrion" Parent terms retrieved using org.Sc.sgd.db (S. cerevisiae) Biological process parent terms of GO terms are: term GO:0006091 "generation of precursor metabolites and energy" GO:0043604 "amide biosynthetic process" GO:0043603 "amide metabolic process" GO:0043436 "oxoacid metabolic process" GO:0019752 "carboxylic acid metabolic process" GO:0006082 "organic acid metabolic process" GO:0006090 "pyruvate metabolic process" GO:0046034 "ATP metabolic process" GO:0009205 "purine ribonucleoside triphosphate metabolic process" GO:0009144 "purine nucleoside triphosphate metabolic process" GO:0046031 "ADP metabolic process" GO:0009199 "ribonucleoside triphosphate metabolic process" GO:0009135 "purine nucleoside diphosphate metabolic process" GO:0009179 "purine ribonucleoside diphosphate metabolic process" GO:0046496 "nicotinamide nucleotide metabolic process" GO:0019362 "pyridine nucleotide metabolic process" GO:0043043 "peptide biosynthetic process" GO:0009185 "ribonucleoside diphosphate metabolic process" GO:0009141 "nucleoside triphosphate metabolic process" GO:0009132 "nucleoside diphosphate metabolic process" GO:0006518 "peptide metabolic process" GO:0006412 "translation" GO:0044283 "small molecule biosynthetic process" GO:0045333 "cellular respiration" GO:0015980 "energy derivation by oxidation of organic compounds" GO:0009134 "nucleoside diphosphate catabolic process" GO:0009191 "ribonucleoside diphosphate catabolic process" GO:0009137 "purine nucleoside diphosphate catabolic process" GO:0009181 "purine ribonucleoside diphosphate catabolic process" GO:0046032 "ADP catabolic process" GO:0072523 "purine-containing compound catabolic process" GO:0072521 "purine-containing compound metabolic process" GO:0006163 "purine nucleotide metabolic process" GO:0072526 "pyridine-containing compound catabolic process" GO:0072524 "pyridine-containing compound metabolic process" GO:0019364 "pyridine nucleotide catabolic process" GO:0006096 "glycolytic process" GO:0006195 "purine nucleotide catabolic process" GO:0009261 "ribonucleotide catabolic process" GO:0009154 "purine ribonucleotide catabolic process" GO:0009060 "aerobic respiration" GO:0032787 "monocarboxylic acid metabolic process" GO:0009166 "nucleotide catabolic process" GO:1901292 "nucleoside phosphate catabolic process" GO:0007005 "mitochondrion organization" GO:0009150 "purine ribonucleotide metabolic process" GO:0009117 "nucleotide metabolic process" GO:0006753 "nucleoside phosphate metabolic process" GO:0009259 "ribonucleotide metabolic process" GO:0033108 "mitochondrial respiratory chain complex assembly" GO:0019693 "ribose phosphate metabolic process" GO:0019318 "hexose metabolic process" GO:0046434 "organophosphate catabolic process" GO:0006743 "ubiquinone metabolic process" GO:1901661 "quinone metabolic process" GO:0006744 "ubiquinone biosynthetic process" GO:1901663 "quinone biosynthetic process" GO:1990542 "mitochondrial transmembrane transport" GO:1901361 "organic cyclic compound catabolic process" GO:0022900 "electron transport chain" GO:0046700 "heterocycle catabolic process" GO:0019637 "organophosphate metabolic process" GO:0006119 "oxidative phosphorylation" GO:0005996 "monosaccharide metabolic process" GO:0017004 "cytochrome complex assembly" GO:0006839 "mitochondrial transport" GO:0008610 "lipid biosynthetic process" GO:0044270 "cellular nitrogen compound catabolic process" GO:0044248 "cellular catabolic process" GO:0019439 "aromatic compound catabolic process" GO:0006006 "glucose metabolic process" GO:0046394 "carboxylic acid biosynthetic process" GO:0055086 "nucleobase-containing small molecule metabolic process" GO:0016053 "organic acid biosynthetic process" GO:0034655 "nucleobase-containing compound catabolic process" GO:1901136 "carbohydrate derivative catabolic process" GO:0006694 "steroid biosynthetic process" GO:0006099 "tricarboxylic acid cycle" GO:0019646 "aerobic electron transport chain" GO:0042775 "mitochondrial ATP synthesis coupled electron transport" GO:1901565 "organonitrogen compound catabolic process" GO:0043648 "dicarboxylic acid metabolic process" GO:0009069 "serine family amino acid metabolic process" GO:0042773 "ATP synthesis coupled electron transport" GO:0044272 "sulfur compound biosynthetic process" GO:0006164 "purine nucleotide biosynthetic process" GO:0009396 "folic acid-containing compound biosynthetic process" GO:0016126 "sterol biosynthetic process" GO:0043650 "dicarboxylic acid biosynthetic process" GO:0006413 "translational initiation" GO:0008202 "steroid metabolic process" GO:0022904 "respiratory electron transport chain" GO:0042559 "pteridine-containing compound biosynthetic process" GO:0046364 "monosaccharide biosynthetic process" GO:0019319 "hexose biosynthetic process" GO:0006094 "gluconeogenesis" GO:0016125 "sterol metabolic process" GO:0051604 "protein maturation" GO:0002183 "cytoplasmic translational initiation" GO:0072522 "purine-containing compound biosynthetic process" GO:0042168 "heme metabolic process" GO:0006783 "heme biosynthetic process" GO:0033013 "tetrapyrrole metabolic process" GO:0033014 "tetrapyrrole biosynthetic process" GO:0006778 "porphyrin-containing compound metabolic process" GO:0006779 "porphyrin-containing compound biosynthetic process" GO:0016051 "carbohydrate biosynthetic process" GO:0006626 "protein targeting to mitochondrion" parentTerm GO:0006091 "generation of precursor metabolites and energy" GO:0043604 "amide biosynthetic process" GO:0043603 "amide biosynthetic process" GO:0043436 "oxoacid metabolic process" GO:0019752 "oxoacid metabolic process" GO:0006082 "oxoacid metabolic process" GO:0006090 "oxoacid metabolic process" GO:0046034 "oxoacid metabolic process" GO:0009205 "oxoacid metabolic process" GO:0009144 "oxoacid metabolic process" GO:0046031 "oxoacid metabolic process" GO:0009199 "oxoacid metabolic process" GO:0009135 "oxoacid metabolic process" GO:0009179 "oxoacid metabolic process" GO:0046496 "nicotinamide nucleotide metabolic process" GO:0019362 "nicotinamide nucleotide metabolic process" GO:0043043 "amide biosynthetic process" GO:0009185 "oxoacid metabolic process" GO:0009141 "oxoacid metabolic process" GO:0009132 "oxoacid metabolic process" GO:0006518 "amide biosynthetic process" GO:0006412 "amide biosynthetic process" GO:0044283 "oxoacid metabolic process" GO:0045333 "generation of precursor metabolites and energy" GO:0015980 "generation of precursor metabolites and energy" GO:0009134 "oxoacid metabolic process" GO:0009191 "oxoacid metabolic process" GO:0009137 "oxoacid metabolic process" GO:0009181 "oxoacid metabolic process" GO:0046032 "oxoacid metabolic process" GO:0072523 "purine-containing compound catabolic process" GO:0072521 "purine-containing compound metabolic process" GO:0006163 "purine-containing compound metabolic process" GO:0072526 "nicotinamide nucleotide metabolic process" GO:0072524 "nicotinamide nucleotide metabolic process" GO:0019364 "nicotinamide nucleotide metabolic process" GO:0006096 "oxoacid metabolic process" GO:0006195 "purine-containing compound catabolic process" GO:0009261 "ribonucleotide catabolic process" GO:0009154 "ribonucleotide catabolic process" GO:0009060 "generation of precursor metabolites and energy" GO:0032787 "oxoacid metabolic process" GO:0009166 "ribonucleotide catabolic process" GO:1901292 "ribonucleotide catabolic process" GO:0007005 "mitochondrion organization" GO:0009150 "ribonucleotide catabolic process" GO:0009117 "oxoacid metabolic process" GO:0006753 "oxoacid metabolic process" GO:0009259 "ribonucleotide catabolic process" GO:0033108 "mitochondrion organization" GO:0019693 "ribonucleotide catabolic process" GO:0019318 "hexose metabolic process" GO:0046434 "ribonucleotide catabolic process" GO:0006743 "oxoacid metabolic process" GO:1901661 "oxoacid metabolic process" GO:0006744 "oxoacid metabolic process" GO:1901663 "oxoacid metabolic process" GO:1990542 "mitochondrial transmembrane transport" GO:1901361 "purine-containing compound catabolic process" GO:0022900 "generation of precursor metabolites and energy" GO:0046700 "purine-containing compound catabolic process" GO:0019637 "ribonucleotide catabolic process" GO:0006119 "generation of precursor metabolites and energy" GO:0005996 "hexose metabolic process" GO:0017004 "mitochondrion organization" GO:0006839 "mitochondrial transmembrane transport" GO:0008610 "lipid biosynthetic process" GO:0044270 "purine-containing compound catabolic process" GO:0044248 "purine-containing compound catabolic process" GO:0019439 "purine-containing compound catabolic process" GO:0006006 "hexose metabolic process" GO:0046394 "oxoacid metabolic process" GO:0055086 "oxoacid metabolic process" GO:0016053 "oxoacid metabolic process" GO:0034655 "purine-containing compound catabolic process" GO:1901136 "purine-containing compound catabolic process" GO:0006694 "lipid biosynthetic process" GO:0006099 "generation of precursor metabolites and energy" GO:0019646 "generation of precursor metabolites and energy" GO:0042775 "generation of precursor metabolites and energy" GO:1901565 "purine-containing compound catabolic process" GO:0043648 "oxoacid metabolic process" GO:0009069 "oxoacid metabolic process" GO:0042773 "generation of precursor metabolites and energy" GO:0044272 "sulfur compound biosynthetic process" GO:0006164 "purine-containing compound metabolic process" GO:0009396 "folic acid-containing compound biosynthetic process" GO:0016126 "lipid biosynthetic process" GO:0043650 "oxoacid metabolic process" GO:0006413 "amide biosynthetic process" GO:0008202 "lipid biosynthetic process" GO:0022904 "generation of precursor metabolites and energy" GO:0042559 "folic acid-containing compound biosynthetic process" GO:0046364 "hexose metabolic process" GO:0019319 "hexose metabolic process" GO:0006094 "hexose metabolic process" GO:0016125 "lipid biosynthetic process" GO:0051604 "protein maturation" GO:0002183 "amide biosynthetic process" GO:0072522 "purine-containing compound metabolic process" GO:0042168 "heme metabolic process" GO:0006783 "heme metabolic process" GO:0033013 "heme metabolic process" GO:0033014 "heme metabolic process" GO:0006778 "heme metabolic process" GO:0006779 "heme metabolic process" GO:0016051 "hexose metabolic process" GO:0006626 "protein targeting to mitochondrion" Number of Biological process parent terms: amide biosynthetic process 7 folic acid-containing compound biosynthetic process 2 generation of precursor metabolites and energy 11 heme metabolic process 6 hexose metabolic process 7 lipid biosynthetic process 5 mitochondrial transmembrane transport 2 mitochondrion organization 3 nicotinamide nucleotide metabolic process 5 oxoacid metabolic process 34 protein maturation 1 protein targeting to mitochondrion 1 purine-containing compound catabolic process 10 purine-containing compound metabolic process 4 ribonucleotide catabolic process 9 sulfur compound biosynthetic process 1 Molecular function parent terms of GO terms are: term GO:0009055 "electron transfer activity" GO:0015453 "oxidoreduction-driven active transmembrane transporter activity" GO:0003735 "structural constituent of ribosome" GO:0003954 "NADH dehydrogenase activity" GO:0005198 "structural molecule activity" GO:0015399 "primary active transmembrane transporter activity" parentTerm GO:0009055 "electron transfer activity" GO:0015453 "oxidoreduction-driven active transmembrane transporter activity" GO:0003735 "structural constituent of ribosome" GO:0003954 "NADH dehydrogenase activity" GO:0005198 "structural constituent of ribosome" GO:0015399 "oxidoreduction-driven active transmembrane transporter activity" Number of Molecular function parent terms: electron transfer activity 1 NADH dehydrogenase activity 1 oxidoreduction-driven active transmembrane transporter activity 2 structural constituent of ribosome 2 Cellular component parent terms of GO terms are: term GO:0005739 "mitochondrion" GO:0005740 "mitochondrial envelope" GO:0031966 "mitochondrial membrane" GO:0031975 "envelope" GO:0031967 "organelle envelope" GO:0019866 "organelle inner membrane" GO:0005743 "mitochondrial inner membrane" GO:0098798 "mitochondrial protein-containing complex" GO:0005759 "mitochondrial matrix" GO:0070469 "respirasome" GO:0098803 "respiratory chain complex" GO:0098800 "inner mitochondrial membrane protein complex" GO:1990204 "oxidoreductase complex" GO:0005840 "ribosome" GO:0005746 "mitochondrial respirasome" GO:0005761 "mitochondrial ribosome" GO:0000313 "organellar ribosome" GO:0044391 "ribosomal subunit" GO:1902495 "transmembrane transporter complex" GO:0070013 "intracellular organelle lumen" GO:0043233 "organelle lumen" GO:0031974 "membrane-enclosed lumen" GO:0042645 "mitochondrial nucleoid" GO:0009295 "nucleoid" GO:1990904 "ribonucleoprotein complex" GO:1990351 "transporter complex" GO:0098796 "membrane protein complex" GO:0015935 "small ribosomal subunit" GO:0033290 "eukaryotic 48S preinitiation complex" parentTerm GO:0005739 "mitochondrion" GO:0005740 "mitochondrial envelope" GO:0031966 "mitochondrial envelope" GO:0031975 "mitochondrial envelope" GO:0031967 "mitochondrial envelope" GO:0019866 "mitochondrial envelope" GO:0005743 "mitochondrial envelope" GO:0098798 "mitochondrion" GO:0005759 "mitochondrial matrix" GO:0070469 "respirasome" GO:0098803 "respirasome" GO:0098800 "mitochondrion" GO:1990204 "oxidoreductase complex" GO:0005840 "ribosome" GO:0005746 "respirasome" GO:0005761 "ribosome" GO:0000313 "ribosome" GO:0044391 "ribosome" GO:1902495 "transmembrane transporter complex" GO:0070013 "mitochondrial matrix" GO:0043233 "mitochondrial matrix" GO:0031974 "mitochondrial matrix" GO:0042645 "mitochondrial nucleoid" GO:0009295 "mitochondrial nucleoid" GO:1990904 "ribonucleoprotein complex" GO:1990351 "transmembrane transporter complex" GO:0098796 "membrane protein complex" GO:0015935 "ribosome" GO:0033290 "ribonucleoprotein complex" Number of Cellular component parent terms: membrane protein complex mitochondrial envelope 1 6 mitochondrial matrix mitochondrial nucleoid 4 2 mitochondrion oxidoreductase complex 3 1 respirasome ribonucleoprotein complex 3 2 ribosome transmembrane transporter complex 5 2 Number of GO terms for which NO parent term was found: 1 No parent term was found for the following GO terms: [1] "GO:0048037" -------------------------------------------------------------- Number of enriched KEGG pathways: 5 KEGG pathways are: [1] "Carbon metabolism - Aspergillus oryzae" [2] "Citrate cycle (TCA cycle) - Aspergillus oryzae" [3] "Oxidative phosphorylation - Aspergillus oryzae" [4] "Glycolysis / Gluconeogenesis - Aspergillus oryzae" [5] "Carbon fixation by Calvin cycle - Aspergillus oryzae" ######################################################################################################################## Cluster number 6 Number of genes in cluster 6 is: 303 Genes in cluster 6 are: [1] "AO090001000218" "AO090001000330" "AO090001000358" "AO090001000418" [5] "AO090001000519" "AO090001000520" "AO090001000563" "AO090001000571" [9] "AO090001000660" "AO090001000666" "AO090001000709" "AO090003000020" [13] "AO090003000081" "AO090003000121" "AO090003000183" "AO090003000198" [17] "AO090003000222" "AO090003000301" "AO090003000315" "AO090003000316" [21] "AO090003000364" "AO090003000371" "AO090003000381" "AO090003000466" [25] "AO090003000477" "AO090003000545" "AO090003000550" "AO090003000629" [29] "AO090003000634" "AO090003000661" "AO090003000688" "AO090003000721" [33] "AO090003000729" "AO090003000750" "AO090003001010" "AO090003001011" [37] "AO090003001024" "AO090003001046" "AO090003001061" "AO090003001075" [41] "AO090003001077" "AO090003001095" "AO090003001097" "AO090003001133" [45] "AO090003001165" "AO090003001472" "AO090003001474" "AO090003001496" [49] "AO090005000086" "AO090005000128" "AO090005000135" "AO090005000159" [53] "AO090005000187" "AO090005000301" "AO090005000302" "AO090005000303" [57] "AO090005000379" "AO090005000411" "AO090005000425" "AO090005000668" [61] "AO090005000719" "AO090005000851" "AO090005000879" "AO090005000883" [65] "AO090005000892" "AO090005000973" "AO090005001074" "AO090005001148" [69] "AO090005001150" "AO090005001157" "AO090005001230" "AO090005001239" [73] "AO090005001258" "AO090005001270" "AO090005001275" "AO090005001291" [77] "AO090005001302" "AO090005001315" "AO090005001319" "AO090005001406" [81] "AO090005001412" "AO090005001455" "AO090005001471" "AO090005001561" [85] "AO090005001567" "AO090005001568" "AO090005001590" "AO090005001643" [89] "AO090009000009" "AO090009000015" "AO090009000148" "AO090009000165" [93] "AO090009000196" "AO090009000213" "AO090009000232" "AO090009000265" [97] "AO090009000378" "AO090009000413" "AO090009000589" "AO090009000594" [101] "AO090009000606" "AO090009000617" "AO090009000643" "AO090009000669" [105] "AO090009000682" "AO090009000691" "AO090009000711" "AO090010000195" [109] "AO090010000218" "AO090010000350" "AO090010000459" "AO090010000473" [113] "AO090010000642" "AO090010000643" "AO090010000649" "AO090010000667" [117] "AO090010000686" "AO090010000713" "AO090010000725" "AO090010000767" [121] "AO090011000060" "AO090011000202" "AO090011000280" "AO090011000323" [125] "AO090011000340" "AO090011000441" "AO090011000598" "AO090011000624" [129] "AO090011000638" "AO090011000661" "AO090011000719" "AO090011000756" [133] "AO090011000764" "AO090011000798" "AO090011000845" "AO090011000853" [137] "AO090011000955" "AO090012000098" "AO090012000394" "AO090012000399" [141] "AO090012000418" "AO090012000433" "AO090012000434" "AO090012000444" [145] "AO090012000502" "AO090012000505" "AO090012000526" "AO090012000581" [149] "AO090012000629" "AO090012000641" "AO090012000647" "AO090012000710" [153] "AO090012000712" "AO090012000798" "AO090012000815" "AO090012000873" [157] "AO090012000890" "AO090012000900" "AO090012000948" "AO090012000996" [161] "AO090012001015" "AO090020000008" "AO090020000016" "AO090020000053" [165] "AO090020000063" "AO090020000065" "AO090020000067" "AO090020000085" [169] "AO090020000285" "AO090020000299" "AO090020000312" "AO090020000314" [173] "AO090020000337" "AO090020000347" "AO090020000349" "AO090020000403" [177] "AO090020000411" "AO090020000539" "AO090020000576" "AO090020000584" [181] "AO090020000599" "AO090020000608" "AO090023000032" "AO090023000099" [185] "AO090023000122" "AO090023000123" "AO090023000127" "AO090023000136" [189] "AO090023000140" "AO090023000314" "AO090023000339" "AO090023000375" [193] "AO090023000412" "AO090023000469" "AO090023000483" "AO090023000489" [197] "AO090023000509" "AO090023000522" "AO090023000535" "AO090023000640" [201] "AO090023000665" "AO090023000682" "AO090023000766" "AO090023000806" [205] "AO090023000859" "AO090023000882" "AO090023000896" "AO090023000899" [209] "AO090023000977" "AO090023000996" "AO090026000025" "AO090026000079" [213] "AO090026000090" "AO090026000135" "AO090026000140" "AO090026000141" [217] "AO090026000183" "AO090026000260" "AO090026000264" "AO090026000284" [221] "AO090026000334" "AO090026000365" "AO090026000369" "AO090026000375" [225] "AO090026000394" "AO090026000478" "AO090026000488" "AO090026000494" [229] "AO090026000498" "AO090026000503" "AO090026000566" "AO090026000616" [233] "AO090026000677" "AO090026000811" "AO090026000816" "AO090038000067" [237] "AO090038000224" "AO090038000248" "AO090038000287" "AO090038000315" [241] "AO090038000333" "AO090038000357" "AO090038000377" "AO090038000399" [245] "AO090038000455" "AO090038000489" "AO090102000121" "AO090102000183" [249] "AO090102000225" "AO090102000227" "AO090102000255" "AO090102000258" [253] "AO090102000389" "AO090102000469" "AO090102000566" "AO090102000632" [257] "AO090103000007" "AO090103000339" "AO090103000340" "AO090103000426" [261] "AO090103000477" "AO090113000004" "AO090113000129" "AO090120000080" [265] "AO090120000224" "AO090120000226" "AO090120000245" "AO090120000246" [269] "AO090120000249" "AO090120000306" "AO090120000358" "AO090120000411" [273] "AO090120000412" "AO090120000478" "AO090120000493" "AO090120000503" [277] "AO090124000021" "AO090124000024" "AO090124000028" "AO090124000075" [281] "AO090138000127" "AO090166000120" "AO090701000041" "AO090701000066" [285] "AO090701000067" "AO090701000082" "AO090701000187" "AO090701000214" [289] "AO090701000226" "AO090701000239" "AO090701000259" "AO090701000450" [293] "AO090701000451" "AO090701000452" "AO090701000557" "AO090701000577" [297] "AO090701000645" "AO090701000684" "AO090701000729" "AO090701000781" [301] "AO090701000783" "AO090701000811" "AO090701000815" -------------------------------------------------------------- Number of enriched GO terms: 158 GO terms are: [1] "amino acid metabolic process" [2] "amino acid biosynthetic process" [3] "alpha-amino acid biosynthetic process" [4] "carboxylic acid biosynthetic process" [5] "organic acid biosynthetic process" [6] "alpha-amino acid metabolic process" [7] "carboxylic acid metabolic process" [8] "oxoacid metabolic process" [9] "organic acid metabolic process" [10] "small molecule biosynthetic process" [11] "proteinogenic amino acid metabolic process" [12] "L-amino acid metabolic process" [13] "ribonucleoprotein complex biogenesis" [14] "L-amino acid biosynthetic process" [15] "proteinogenic amino acid biosynthetic process" [16] "peptide metabolic process" [17] "peptide biosynthetic process" [18] "translation" [19] "amide biosynthetic process" [20] "amide metabolic process" [21] "aspartate family amino acid metabolic process" [22] "ribosome biogenesis" [23] "aspartate family amino acid biosynthetic process" [24] "mitochondrion" [25] "ncRNA metabolic process" [26] "cellular component biogenesis" [27] "aromatic amino acid family biosynthetic process" [28] "ribonucleoside monophosphate metabolic process" [29] "branched-chain amino acid biosynthetic process" [30] "translational initiation" [31] "translation factor activity, RNA binding" [32] "nucleotide metabolic process" [33] "nucleoside phosphate metabolic process" [34] "translation regulator activity, nucleic acid binding" [35] "RNA binding" [36] "translation regulator activity" [37] "translation initiation factor activity" [38] "ligase activity" [39] "nucleotide biosynthetic process" [40] "ribonucleoside monophosphate biosynthetic process" [41] "nucleoside phosphate biosynthetic process" [42] "lysine metabolic process" [43] "purine nucleoside monophosphate metabolic process" [44] "purine ribonucleoside monophosphate metabolic process" [45] "nucleoside monophosphate metabolic process" [46] "nucleoside monophosphate biosynthetic process" [47] "ribose phosphate biosynthetic process" [48] "glutamine family amino acid metabolic process" [49] "ribonucleoprotein complex" [50] "ribose phosphate metabolic process" [51] "purine-containing compound metabolic process" [52] "purine nucleotide metabolic process" [53] "purine nucleoside monophosphate biosynthetic process" [54] "purine ribonucleoside monophosphate biosynthetic process" [55] "branched-chain amino acid metabolic process" [56] "glutamine metabolic process" [57] "aromatic amino acid metabolic process" [58] "purine-containing compound biosynthetic process" [59] "nucleobase-containing small molecule metabolic process" [60] "catalytic activity, acting on RNA" [61] "formation of cytoplasmic translation initiation complex" [62] "eukaryotic translation initiation factor 3 complex" [63] "purine nucleotide biosynthetic process" [64] "eukaryotic 48S preinitiation complex" [65] "rRNA processing" [66] "protein-RNA complex assembly" [67] "ribonucleotide metabolic process" [68] "ribonucleotide biosynthetic process" [69] "organophosphate metabolic process" [70] "translation preinitiation complex" [71] "tRNA aminoacylation for protein translation" [72] "purine ribonucleotide metabolic process" [73] "tRNA metabolic process" [74] "rRNA metabolic process" [75] "aminoacyl-tRNA ligase activity" [76] "purine ribonucleotide biosynthetic process" [77] "ligase activity, forming carbon-oxygen bonds" [78] "amino acid activation" [79] "tRNA aminoacylation" [80] "protein-RNA complex organization" [81] "cytoplasmic translational initiation" [82] "isoleucine biosynthetic process" [83] "ncRNA processing" [84] "isoleucine metabolic process" [85] "catalytic activity, acting on a tRNA" [86] "cytoplasmic translation" [87] "organophosphate biosynthetic process" [88] "eukaryotic 43S preinitiation complex" [89] "dicarboxylic acid metabolic process" [90] "dicarboxylic acid biosynthetic process" [91] "tryptophan metabolic process" [92] "indolalkylamine metabolic process" [93] "indole-containing compound metabolic process" [94] "serine family amino acid biosynthetic process" [95] "methionine metabolic process" [96] "carbon-nitrogen ligase activity, with glutamine as amido-N-donor" [97] "sulfur compound metabolic process" [98] "cytosol" [99] "nucleolus" [100] "RNA processing" [101] "serine family amino acid metabolic process" [102] "translation initiation factor binding" [103] "catalytic activity, acting on a nucleic acid" [104] "biogenic amine metabolic process" [105] "protein folding chaperone" [106] "amine metabolic process" [107] "sulfur compound biosynthetic process" [108] "mitochondrial envelope" [109] "magnesium ion binding" [110] "methionine biosynthetic process" [111] "amine biosynthetic process" [112] "biogenic amine biosynthetic process" [113] "ligase activity, forming carbon-nitrogen bonds" [114] "mitochondrial membrane" [115] "glutamine family amino acid biosynthetic process" [116] "membrane-enclosed lumen" [117] "organelle lumen" [118] "intracellular organelle lumen" [119] "IMP biosynthetic process" [120] "arginine metabolic process" [121] "IMP metabolic process" [122] "sulfur amino acid metabolic process" [123] "valine metabolic process" [124] "ATP-dependent protein folding chaperone" [125] "carbon-oxygen lyase activity" [126] "sulfur amino acid biosynthetic process" [127] "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" [128] "tRNA binding" [129] "nucleobase metabolic process" [130] "carbohydrate derivative biosynthetic process" [131] "hydro-lyase activity" [132] "mitochondrial inner membrane" [133] "protein-containing complex assembly" [134] "organelle inner membrane" [135] "organelle envelope" [136] "envelope" [137] "ribosomal large subunit biogenesis" [138] "protein-containing complex organization" [139] "mitochondrial transmembrane transport" [140] "ribosome" [141] "regulation of translation" [142] "regulation of translational fidelity" [143] "nucleobase biosynthetic process" [144] "mRNA binding" [145] "NAD binding" [146] "protein localization to mitochondrion" [147] "establishment of protein localization to mitochondrion" [148] "regulation of amide metabolic process" [149] "nuclear lumen" [150] "protein transmembrane transport" [151] "protein folding" [152] "lyase activity" [153] "pyridine-containing compound metabolic process" [154] "carbohydrate derivative metabolic process" [155] "EC:3.6.4.13" [156] "RNA helicase activity" [157] "mitochondrial transport" [158] "cellular component assembly" Parent terms retrieved using org.Sc.sgd.db (S. cerevisiae) Biological process parent terms of GO terms are: term GO:0006520 "amino acid metabolic process" GO:0008652 "amino acid biosynthetic process" GO:1901607 "alpha-amino acid biosynthetic process" GO:0046394 "carboxylic acid biosynthetic process" GO:0016053 "organic acid biosynthetic process" GO:1901605 "alpha-amino acid metabolic process" GO:0019752 "carboxylic acid metabolic process" GO:0043436 "oxoacid metabolic process" GO:0006082 "organic acid metabolic process" GO:0044283 "small molecule biosynthetic process" GO:0022613 "ribonucleoprotein complex biogenesis" GO:0006518 "peptide metabolic process" GO:0043043 "peptide biosynthetic process" GO:0006412 "translation" GO:0043604 "amide biosynthetic process" GO:0043603 "amide metabolic process" GO:0009066 "aspartate family amino acid metabolic process" GO:0042254 "ribosome biogenesis" GO:0009067 "aspartate family amino acid biosynthetic process" GO:0034660 "ncRNA metabolic process" GO:0044085 "cellular component biogenesis" GO:0009073 "aromatic amino acid family biosynthetic process" GO:0009161 "ribonucleoside monophosphate metabolic process" GO:0009082 "branched-chain amino acid biosynthetic process" GO:0006413 "translational initiation" GO:0009117 "nucleotide metabolic process" GO:0006753 "nucleoside phosphate metabolic process" GO:0009165 "nucleotide biosynthetic process" GO:0009156 "ribonucleoside monophosphate biosynthetic process" GO:1901293 "nucleoside phosphate biosynthetic process" GO:0006553 "lysine metabolic process" GO:0009126 "purine nucleoside monophosphate metabolic process" GO:0009167 "purine ribonucleoside monophosphate metabolic process" GO:0009123 "nucleoside monophosphate metabolic process" GO:0009124 "nucleoside monophosphate biosynthetic process" GO:0046390 "ribose phosphate biosynthetic process" GO:0009064 "glutamine family amino acid metabolic process" GO:0019693 "ribose phosphate metabolic process" GO:0072521 "purine-containing compound metabolic process" GO:0006163 "purine nucleotide metabolic process" GO:0009127 "purine nucleoside monophosphate biosynthetic process" GO:0009168 "purine ribonucleoside monophosphate biosynthetic process" GO:0009081 "branched-chain amino acid metabolic process" GO:0006541 "glutamine metabolic process" GO:0009072 "aromatic amino acid metabolic process" GO:0072522 "purine-containing compound biosynthetic process" GO:0055086 "nucleobase-containing small molecule metabolic process" GO:0001732 "formation of cytoplasmic translation initiation complex" GO:0006164 "purine nucleotide biosynthetic process" GO:0006364 "rRNA processing" GO:0022618 "protein-RNA complex assembly" GO:0009259 "ribonucleotide metabolic process" GO:0019637 "organophosphate metabolic process" GO:0009260 "ribonucleotide biosynthetic process" GO:0006418 "tRNA aminoacylation for protein translation" GO:0006399 "tRNA metabolic process" GO:0043039 "tRNA aminoacylation" GO:0043038 "amino acid activation" GO:0016072 "rRNA metabolic process" GO:0009152 "purine ribonucleotide biosynthetic process" GO:0009150 "purine ribonucleotide metabolic process" GO:0071826 "protein-RNA complex organization" GO:0002183 "cytoplasmic translational initiation" GO:0009097 "isoleucine biosynthetic process" GO:0034470 "ncRNA processing" GO:0006549 "isoleucine metabolic process" GO:0002181 "cytoplasmic translation" GO:0090407 "organophosphate biosynthetic process" GO:0043648 "dicarboxylic acid metabolic process" GO:0043650 "dicarboxylic acid biosynthetic process" GO:0042430 "indole-containing compound metabolic process" GO:0006586 "indolalkylamine metabolic process" GO:0006568 "tryptophan metabolic process" GO:0009070 "serine family amino acid biosynthetic process" GO:0006555 "methionine metabolic process" GO:0006790 "sulfur compound metabolic process" GO:0006396 "RNA processing" GO:0009069 "serine family amino acid metabolic process" GO:0006576 "biogenic amine metabolic process" GO:0009308 "amine metabolic process" GO:0044272 "sulfur compound biosynthetic process" GO:0009309 "amine biosynthetic process" GO:0042401 "biogenic amine biosynthetic process" GO:0009086 "methionine biosynthetic process" GO:0009084 "glutamine family amino acid biosynthetic process" GO:0006525 "arginine metabolic process" GO:0046040 "IMP metabolic process" GO:0006188 "IMP biosynthetic process" GO:0000096 "sulfur amino acid metabolic process" GO:0006573 "valine metabolic process" GO:0000097 "sulfur amino acid biosynthetic process" GO:0009112 "nucleobase metabolic process" GO:1901137 "carbohydrate derivative biosynthetic process" GO:0065003 "protein-containing complex assembly" GO:0042273 "ribosomal large subunit biogenesis" GO:0043933 "protein-containing complex organization" GO:1990542 "mitochondrial transmembrane transport" GO:0006417 "regulation of translation" GO:0006450 "regulation of translational fidelity" GO:0046112 "nucleobase biosynthetic process" GO:0070585 "protein localization to mitochondrion" GO:0072655 "establishment of protein localization to mitochondrion" GO:0034248 "regulation of amide metabolic process" GO:0071806 "protein transmembrane transport" GO:0006457 "protein folding" GO:0072524 "pyridine-containing compound metabolic process" GO:1901135 "carbohydrate derivative metabolic process" GO:0006839 "mitochondrial transport" GO:0022607 "cellular component assembly" parentTerm GO:0006520 "amino acid metabolic process" GO:0008652 "amino acid biosynthetic process" GO:1901607 "amino acid metabolic process" GO:0046394 "amino acid biosynthetic process" GO:0016053 "amino acid biosynthetic process" GO:1901605 "amino acid metabolic process" GO:0019752 "amino acid biosynthetic process" GO:0043436 "amino acid biosynthetic process" GO:0006082 "amino acid biosynthetic process" GO:0044283 "amino acid biosynthetic process" GO:0022613 "ribonucleoprotein complex biogenesis" GO:0006518 "peptide metabolic process" GO:0043043 "peptide metabolic process" GO:0006412 "peptide metabolic process" GO:0043604 "peptide metabolic process" GO:0043603 "peptide metabolic process" GO:0009066 "amino acid metabolic process" GO:0042254 "ribonucleoprotein complex biogenesis" GO:0009067 "amino acid metabolic process" GO:0034660 "ncRNA metabolic process" GO:0044085 "ribonucleoprotein complex biogenesis" GO:0009073 "amino acid metabolic process" GO:0009161 "amino acid biosynthetic process" GO:0009082 "amino acid metabolic process" GO:0006413 "peptide metabolic process" GO:0009117 "amino acid biosynthetic process" GO:0006753 "amino acid biosynthetic process" GO:0009165 "amino acid biosynthetic process" GO:0009156 "amino acid biosynthetic process" GO:1901293 "amino acid biosynthetic process" GO:0006553 "amino acid metabolic process" GO:0009126 "amino acid biosynthetic process" GO:0009167 "amino acid biosynthetic process" GO:0009123 "amino acid biosynthetic process" GO:0009124 "amino acid biosynthetic process" GO:0046390 "ribose phosphate biosynthetic process" GO:0009064 "amino acid metabolic process" GO:0019693 "ribose phosphate biosynthetic process" GO:0072521 "purine-containing compound metabolic process" GO:0006163 "purine-containing compound metabolic process" GO:0009127 "amino acid biosynthetic process" GO:0009168 "amino acid biosynthetic process" GO:0009081 "amino acid metabolic process" GO:0006541 "amino acid metabolic process" GO:0009072 "amino acid metabolic process" GO:0072522 "purine-containing compound metabolic process" GO:0055086 "amino acid biosynthetic process" GO:0001732 "peptide metabolic process" GO:0006164 "purine-containing compound metabolic process" GO:0006364 "ncRNA metabolic process" GO:0022618 "protein-RNA complex assembly" GO:0009259 "ribose phosphate biosynthetic process" GO:0019637 "organophosphate metabolic process" GO:0009260 "ribose phosphate biosynthetic process" GO:0006418 "amino acid metabolic process" GO:0006399 "ncRNA metabolic process" GO:0043039 "amino acid metabolic process" GO:0043038 "amino acid metabolic process" GO:0016072 "ncRNA metabolic process" GO:0009152 "ribose phosphate biosynthetic process" GO:0009150 "ribose phosphate biosynthetic process" GO:0071826 "protein-RNA complex assembly" GO:0002183 "peptide metabolic process" GO:0009097 "amino acid metabolic process" GO:0034470 "ncRNA metabolic process" GO:0006549 "amino acid metabolic process" GO:0002181 "peptide metabolic process" GO:0090407 "organophosphate metabolic process" GO:0043648 "amino acid biosynthetic process" GO:0043650 "amino acid biosynthetic process" GO:0042430 "indole-containing compound metabolic process" GO:0006586 "indole-containing compound metabolic process" GO:0006568 "indole-containing compound metabolic process" GO:0009070 "amino acid metabolic process" GO:0006555 "methionine metabolic process" GO:0006790 "methionine metabolic process" GO:0006396 "ncRNA metabolic process" GO:0009069 "amino acid metabolic process" GO:0006576 "biogenic amine metabolic process" GO:0009308 "biogenic amine metabolic process" GO:0044272 "methionine metabolic process" GO:0009309 "biogenic amine metabolic process" GO:0042401 "biogenic amine metabolic process" GO:0009086 "methionine metabolic process" GO:0009084 "amino acid metabolic process" GO:0006525 "amino acid metabolic process" GO:0046040 "amino acid biosynthetic process" GO:0006188 "amino acid biosynthetic process" GO:0000096 "methionine metabolic process" GO:0006573 "amino acid metabolic process" GO:0000097 "methionine metabolic process" GO:0009112 "amino acid biosynthetic process" GO:1901137 "ribose phosphate biosynthetic process" GO:0065003 "ribonucleoprotein complex biogenesis" GO:0042273 "ribonucleoprotein complex biogenesis" GO:0043933 "protein-RNA complex assembly" GO:1990542 "mitochondrial transmembrane transport" GO:0006417 "peptide metabolic process" GO:0006450 "regulation of translational fidelity" GO:0046112 "amino acid biosynthetic process" GO:0070585 "protein localization to mitochondrion" GO:0072655 "protein localization to mitochondrion" GO:0034248 "peptide metabolic process" GO:0071806 "protein localization to mitochondrion" GO:0006457 "protein folding" GO:0072524 "pyridine-containing compound metabolic process" GO:1901135 "ribose phosphate biosynthetic process" GO:0006839 "mitochondrial transmembrane transport" GO:0022607 "ribonucleoprotein complex biogenesis" Number of Biological process parent terms: amino acid biosynthetic process 26 amino acid metabolic process 22 biogenic amine metabolic process 4 indole-containing compound metabolic process 3 methionine metabolic process 6 mitochondrial transmembrane transport 2 ncRNA metabolic process 6 organophosphate metabolic process 2 peptide metabolic process 11 protein-RNA complex assembly 3 protein folding 1 protein localization to mitochondrion 3 purine-containing compound metabolic process 4 pyridine-containing compound metabolic process 1 regulation of translational fidelity 1 ribonucleoprotein complex biogenesis 6 ribose phosphate biosynthetic process 8 Molecular function parent terms of GO terms are: term GO:0008135 "translation factor activity, RNA binding" GO:0090079 "translation regulator activity, nucleic acid binding" GO:0003723 "RNA binding" GO:0045182 "translation regulator activity" GO:0003743 "translation initiation factor activity" GO:0016874 "ligase activity" GO:0140098 "catalytic activity, acting on RNA" GO:0016875 "ligase activity, forming carbon-oxygen bonds" GO:0004812 "aminoacyl-tRNA ligase activity" GO:0140101 "catalytic activity, acting on a tRNA" GO:0016884 "carbon-nitrogen ligase activity, with glutamine as amido-N-donor" GO:0031369 "translation initiation factor binding" GO:0044183 "protein folding chaperone" GO:0000287 "magnesium ion binding" GO:0016879 "ligase activity, forming carbon-nitrogen bonds" GO:0016835 "carbon-oxygen lyase activity" GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" GO:0000049 "tRNA binding" GO:0016836 "hydro-lyase activity" GO:0003729 "mRNA binding" GO:0051287 "NAD binding" GO:0016829 "lyase activity" GO:0003724 "RNA helicase activity" parentTerm GO:0008135 "translation factor activity, RNA binding" GO:0090079 "translation factor activity, RNA binding" GO:0003723 "RNA binding" GO:0045182 "translation factor activity, RNA binding" GO:0003743 "translation factor activity, RNA binding" GO:0016874 "ligase activity" GO:0140098 "catalytic activity, acting on RNA" GO:0016875 "ligase activity" GO:0004812 "ligase activity" GO:0140101 "catalytic activity, acting on RNA" GO:0016884 "ligase activity" GO:0031369 "translation initiation factor binding" GO:0044183 "protein folding chaperone" GO:0000287 "magnesium ion binding" GO:0016879 "ligase activity" GO:0016835 "carbon-oxygen lyase activity" GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" GO:0000049 "RNA binding" GO:0016836 "carbon-oxygen lyase activity" GO:0003729 "RNA binding" GO:0051287 "NAD binding" GO:0016829 "carbon-oxygen lyase activity" GO:0003724 "catalytic activity, acting on RNA" Number of Molecular function parent terms: carbon-oxygen lyase activity 3 catalytic activity, acting on RNA 3 ligase activity 5 magnesium ion binding 1 NAD binding 1 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor 1 protein folding chaperone 1 RNA binding 3 translation factor activity, RNA binding 4 translation initiation factor binding 1 Cellular component parent terms of GO terms are: term GO:0005739 "mitochondrion" GO:1990904 "ribonucleoprotein complex" GO:0005852 "eukaryotic translation initiation factor 3 complex" GO:0033290 "eukaryotic 48S preinitiation complex" GO:0070993 "translation preinitiation complex" GO:0016282 "eukaryotic 43S preinitiation complex" GO:0005829 "cytosol" GO:0005730 "nucleolus" GO:0005740 "mitochondrial envelope" GO:0031966 "mitochondrial membrane" GO:0070013 "intracellular organelle lumen" GO:0043233 "organelle lumen" GO:0031974 "membrane-enclosed lumen" GO:0005743 "mitochondrial inner membrane" GO:0019866 "organelle inner membrane" GO:0031975 "envelope" GO:0031967 "organelle envelope" GO:0005840 "ribosome" GO:0031981 "nuclear lumen" parentTerm GO:0005739 "mitochondrion" GO:1990904 "ribonucleoprotein complex" GO:0005852 "eukaryotic translation initiation factor 3 complex" GO:0033290 "ribonucleoprotein complex" GO:0070993 "ribonucleoprotein complex" GO:0016282 "ribonucleoprotein complex" GO:0005829 "cytosol" GO:0005730 "nucleolus" GO:0005740 "mitochondrial envelope" GO:0031966 "mitochondrial envelope" GO:0070013 "nucleolus" GO:0043233 "nucleolus" GO:0031974 "nucleolus" GO:0005743 "mitochondrial envelope" GO:0019866 "mitochondrial envelope" GO:0031975 "mitochondrial envelope" GO:0031967 "mitochondrial envelope" GO:0005840 "ribosome" GO:0031981 "nucleolus" Number of Cellular component parent terms: cytosol 1 eukaryotic translation initiation factor 3 complex 1 mitochondrial envelope 6 mitochondrion 1 nucleolus 5 ribonucleoprotein complex 4 ribosome 1 Number of GO terms for which NO parent term was found: 7 No parent term was found for the following GO terms: [1] "proteinogenic amino acid metabolic process" [2] "L-amino acid metabolic process" [3] "L-amino acid biosynthetic process" [4] "proteinogenic amino acid biosynthetic process" [5] "catalytic activity, acting on a nucleic acid" [6] "ATP-dependent protein folding chaperone" [7] "EC:3.6.4.13" -------------------------------------------------------------- Number of enriched KEGG pathways: 10 KEGG pathways are: [1] "Biosynthesis of amino acids - Aspergillus oryzae" [2] "2-Oxocarboxylic acid metabolism - Aspergillus oryzae" [3] "Purine metabolism - Aspergillus oryzae" [4] "Lysine biosynthesis - Aspergillus oryzae" [5] "Phenylalanine, tyrosine and tryptophan biosynthesis - Aspergillus oryzae" [6] "Valine, leucine and isoleucine biosynthesis - Aspergillus oryzae" [7] "Cysteine and methionine metabolism - Aspergillus oryzae" [8] "Aminoacyl-tRNA biosynthesis - Aspergillus oryzae" [9] "Glycine, serine and threonine metabolism - Aspergillus oryzae" [10] "Vitamin B6 metabolism - Aspergillus oryzae" ######################################################################################################################## Cluster number 7 Number of genes in cluster 7 is: 310 Genes in cluster 7 are: [1] "AO090001000051" "AO090001000231" "AO090001000265" "AO090001000300" [5] "AO090001000327" "AO090001000338" "AO090001000378" "AO090001000413" [9] "AO090001000453" "AO090001000455" "AO090001000484" "AO090001000485" [13] "AO090001000498" "AO090001000524" "AO090001000559" "AO090001000583" [17] "AO090001000712" "AO090001t00009" "AO090003000001" "AO090003000090" [21] "AO090003000102" "AO090003000163" "AO090003000205" "AO090003000270" [25] "AO090003000294" "AO090003000383" "AO090003000400" "AO090003000418" [29] "AO090003000422" "AO090003000547" "AO090003000548" "AO090003000552" [33] "AO090003000582" "AO090003000618" "AO090003000664" "AO090003000679" [37] "AO090003000690" "AO090003000761" "AO090003000798" "AO090003000805" [41] "AO090003000831" "AO090003000872" "AO090003000895" "AO090003000902" [45] "AO090003000917" "AO090003000925" "AO090003000947" "AO090003000979" [49] "AO090003000992" "AO090003001082" "AO090003001132" "AO090003001141" [53] "AO090003001150" "AO090003001171" "AO090003001234" "AO090003001255" [57] "AO090003001390" "AO090005000022" "AO090005000031" "AO090005000265" [61] "AO090005000274" "AO090005000409" "AO090005000519" "AO090005000582" [65] "AO090005000583" "AO090005000584" "AO090005000616" "AO090005000625" [69] "AO090005000648" "AO090005000737" "AO090005000758" "AO090005000761" [73] "AO090005000781" "AO090005000840" "AO090005001077" "AO090005001124" [77] "AO090005001132" "AO090005001192" "AO090005001225" "AO090005001276" [81] "AO090005001286" "AO090005001305" "AO090005001314" "AO090005001391" [85] "AO090005001399" "AO090005001440" "AO090005001441" "AO090005001461" [89] "AO090005001509" "AO090005001556" "AO090005001565" "AO090005001580" [93] "AO090005001597" "AO090005001601" "AO090005001631" "AO090005001641" [97] "AO090009000016" "AO090009000055" "AO090009000097" "AO090009000098" [101] "AO090009000123" "AO090009000175" "AO090009000202" "AO090009000264" [105] "AO090009000269" "AO090009000302" "AO090009000377" "AO090009000380" [109] "AO090009000395" "AO090009000405" "AO090009000412" "AO090009000424" [113] "AO090009000485" "AO090009000609" "AO090009000629" "AO090009000698" [117] "AO090009000705" "AO090009000715" "AO090010000024" "AO090010000099" [121] "AO090010000200" "AO090010000223" "AO090010000290" "AO090010000351" [125] "AO090010000471" "AO090010000623" "AO090010000654" "AO090010000714" [129] "AO090011000105" "AO090011000106" "AO090011000152" "AO090011000267" [133] "AO090011000291" "AO090011000310" "AO090011000338" "AO090011000367" [137] "AO090011000414" "AO090011000469" "AO090011000490" "AO090011000509" [141] "AO090011000578" "AO090011000580" "AO090011000589" "AO090011000590" [145] "AO090011000596" "AO090011000626" "AO090011000666" "AO090011000717" [149] "AO090011000775" "AO090011000782" "AO090011000795" "AO090011000812" [153] "AO090011000850" "AO090011000868" "AO090011000901" "AO090011000916" [157] "AO090011000952" "AO090011000954" "AO090012000199" "AO090012000210" [161] "AO090012000334" "AO090012000396" "AO090012000475" "AO090012000500" [165] "AO090012000514" "AO090012000549" "AO090012000613" "AO090012000636" [169] "AO090012000651" "AO090012000782" "AO090012000788" "AO090012000801" [173] "AO090012000830" "AO090012000909" "AO090012000915" "AO090012000929" [177] "AO090012000931" "AO090012000938" "AO090020000032" "AO090020000047" [181] "AO090020000297" "AO090020000298" "AO090020000313" "AO090020000356" [185] "AO090020000551" "AO090020000575" "AO090020000665" "AO090020t00006" [189] "AO090023000025" "AO090023000033" "AO090023000219" "AO090023000221" [193] "AO090023000318" "AO090023000334" "AO090023000336" "AO090023000390" [197] "AO090023000476" "AO090023000532" "AO090023000569" "AO090023000599" [201] "AO090023000667" "AO090023000726" "AO090023000728" "AO090023000758" [205] "AO090023000772" "AO090023000781" "AO090023000796" "AO090023000798" [209] "AO090023000815" "AO090023000830" "AO090023000837" "AO090023000844" [213] "AO090023000875" "AO090023000888" "AO090023000997" "AO090023001008" [217] "AO090026000064" "AO090026000084" "AO090026000138" "AO090026000165" [221] "AO090026000166" "AO090026000229" "AO090026000265" "AO090026000269" [225] "AO090026000342" "AO090026000356" "AO090026000421" "AO090026000423" [229] "AO090026000458" "AO090026000520" "AO090026000538" "AO090026000542" [233] "AO090026000543" "AO090026000656" "AO090026000843" "AO090038000066" [237] "AO090038000110" "AO090038000249" "AO090038000253" "AO090038000265" [241] "AO090038000295" "AO090038000344" "AO090038000463" "AO090038000592" [245] "AO090102000017" "AO090102000210" "AO090102000226" "AO090102000276" [249] "AO090102000295" "AO090102000335" "AO090102000360" "AO090102000434" [253] "AO090102000502" "AO090102000533" "AO090102000543" "AO090102000556" [257] "AO090102000558" "AO090102000567" "AO090102000573" "AO090102000606" [261] "AO090102000625" "AO090103000216" "AO090103000331" "AO090103000341" [265] "AO090120000077" "AO090120000131" "AO090120000169" "AO090120000250" [269] "AO090120000291" "AO090120000304" "AO090120000344" "AO090120000351" [273] "AO090120000397" "AO090120000410" "AO090120000414" "AO090120000498" [277] "AO090120000500" "AO090166000019" "AO090166000076" "AO090166000088" [281] "AO090206000027" "AO090206000047" "AO090206000117" "AO090701000004" [285] "AO090701000014" "AO090701000018" "AO090701000022" "AO090701000026" [289] "AO090701000040" "AO090701000070" "AO090701000090" "AO090701000100" [293] "AO090701000101" "AO090701000133" "AO090701000140" "AO090701000146" [297] "AO090701000165" "AO090701000167" "AO090701000292" "AO090701000295" [301] "AO090701000359" "AO090701000457" "AO090701000482" "AO090701000532" [305] "AO090701000543" "AO090701000639" "AO090701000752" "AO090701000754" [309] "AO090701000761" "AO090701000784" -------------------------------------------------------------- Number of enriched GO terms: 80 GO terms are: [1] "structural constituent of ribosome" [2] "ribosome" [3] "structural molecule activity" [4] "translation" [5] "peptide biosynthetic process" [6] "peptide metabolic process" [7] "amide biosynthetic process" [8] "ribonucleoprotein complex" [9] "amide metabolic process" [10] "ribosomal subunit" [11] "large ribosomal subunit" [12] "mitochondrion" [13] "cytosolic ribosome" [14] "mitochondrial protein-containing complex" [15] "small ribosomal subunit" [16] "organellar ribosome" [17] "mitochondrial ribosome" [18] "mitochondrial matrix" [19] "cytosolic small ribosomal subunit" [20] "mitochondrial translation" [21] "mitochondrial envelope" [22] "mitochondrial membrane" [23] "mitochondrial gene expression" [24] "organellar large ribosomal subunit" [25] "mitochondrial large ribosomal subunit" [26] "mitochondrial inner membrane" [27] "cytosolic large ribosomal subunit" [28] "organelle inner membrane" [29] "RNA binding" [30] "cytosol" [31] "organelle envelope" [32] "envelope" [33] "rRNA binding" [34] "inner mitochondrial membrane protein complex" [35] "respiratory electron transport chain" [36] "aerobic electron transport chain" [37] "mitochondrial ATP synthesis coupled electron transport" [38] "cellular respiration" [39] "ATP synthesis coupled electron transport" [40] "generation of precursor metabolites and energy" [41] "membrane-enclosed lumen" [42] "organelle lumen" [43] "intracellular organelle lumen" [44] "ribosome biogenesis" [45] "oxidative phosphorylation" [46] "purine nucleoside triphosphate metabolic process" [47] "purine ribonucleoside triphosphate metabolic process" [48] "aerobic respiration" [49] "ribonucleoside triphosphate metabolic process" [50] "phosphotransferase activity, phosphate group as acceptor" [51] "energy derivation by oxidation of organic compounds" [52] "ncRNA metabolic process" [53] "nucleoside triphosphate metabolic process" [54] "ribonucleoprotein complex biogenesis" [55] "membrane protein complex" [56] "organophosphate metabolic process" [57] "ncRNA processing" [58] "organophosphate biosynthetic process" [59] "electron transport chain" [60] "transmembrane transporter complex" [61] "ribonucleotide metabolic process" [62] "mitochondrial respirasome" [63] "respirasome" [64] "ribose phosphate metabolic process" [65] "ribosomal small subunit biogenesis" [66] "methylation" [67] "translational elongation" [68] "pyrimidine-containing compound biosynthetic process" [69] "respiratory chain complex" [70] "transporter complex" [71] "mitochondrion organization" [72] "pyrimidine-containing compound metabolic process" [73] "maturation of SSU-rRNA" [74] "cytoplasmic translation" [75] "ATP transmembrane transporter activity" [76] "nucleobase biosynthetic process" [77] "rRNA processing" [78] "adenine nucleotide transmembrane transporter activity" [79] "purine ribonucleotide transmembrane transporter activity" [80] "ADP metabolic process" Parent terms retrieved using org.Sc.sgd.db (S. cerevisiae) Biological process parent terms of GO terms are: term GO:0006412 "translation" GO:0043043 "peptide biosynthetic process" GO:0006518 "peptide metabolic process" GO:0043604 "amide biosynthetic process" GO:0043603 "amide metabolic process" GO:0032543 "mitochondrial translation" GO:0140053 "mitochondrial gene expression" GO:0022904 "respiratory electron transport chain" GO:0019646 "aerobic electron transport chain" GO:0042775 "mitochondrial ATP synthesis coupled electron transport" GO:0045333 "cellular respiration" GO:0042773 "ATP synthesis coupled electron transport" GO:0006091 "generation of precursor metabolites and energy" GO:0042254 "ribosome biogenesis" GO:0006119 "oxidative phosphorylation" GO:0009144 "purine nucleoside triphosphate metabolic process" GO:0009205 "purine ribonucleoside triphosphate metabolic process" GO:0009199 "ribonucleoside triphosphate metabolic process" GO:0009060 "aerobic respiration" GO:0015980 "energy derivation by oxidation of organic compounds" GO:0034660 "ncRNA metabolic process" GO:0009141 "nucleoside triphosphate metabolic process" GO:0022613 "ribonucleoprotein complex biogenesis" GO:0019637 "organophosphate metabolic process" GO:0034470 "ncRNA processing" GO:0090407 "organophosphate biosynthetic process" GO:0022900 "electron transport chain" GO:0009259 "ribonucleotide metabolic process" GO:0019693 "ribose phosphate metabolic process" GO:0042274 "ribosomal small subunit biogenesis" GO:0032259 "methylation" GO:0072528 "pyrimidine-containing compound biosynthetic process" GO:0006414 "translational elongation" GO:0007005 "mitochondrion organization" GO:0072527 "pyrimidine-containing compound metabolic process" GO:0030490 "maturation of SSU-rRNA" GO:0002181 "cytoplasmic translation" GO:0046112 "nucleobase biosynthetic process" GO:0046031 "ADP metabolic process" GO:0006364 "rRNA processing" parentTerm GO:0006412 "translation" GO:0043043 "translation" GO:0006518 "translation" GO:0043604 "translation" GO:0043603 "translation" GO:0032543 "mitochondrial translation" GO:0140053 "mitochondrial translation" GO:0022904 "respiratory electron transport chain" GO:0019646 "respiratory electron transport chain" GO:0042775 "respiratory electron transport chain" GO:0045333 "respiratory electron transport chain" GO:0042773 "respiratory electron transport chain" GO:0006091 "respiratory electron transport chain" GO:0042254 "ribosome biogenesis" GO:0006119 "respiratory electron transport chain" GO:0009144 "purine nucleoside triphosphate metabolic process" GO:0009205 "purine nucleoside triphosphate metabolic process" GO:0009199 "purine nucleoside triphosphate metabolic process" GO:0009060 "respiratory electron transport chain" GO:0015980 "respiratory electron transport chain" GO:0034660 "ncRNA metabolic process" GO:0009141 "purine nucleoside triphosphate metabolic process" GO:0022613 "ribosome biogenesis" GO:0019637 "purine nucleoside triphosphate metabolic process" GO:0034470 "ncRNA metabolic process" GO:0090407 "purine nucleoside triphosphate metabolic process" GO:0022900 "respiratory electron transport chain" GO:0009259 "purine nucleoside triphosphate metabolic process" GO:0019693 "purine nucleoside triphosphate metabolic process" GO:0042274 "ribosome biogenesis" GO:0032259 "methylation" GO:0072528 "pyrimidine-containing compound biosynthetic process" GO:0006414 "translation" GO:0007005 "mitochondrion organization" GO:0072527 "pyrimidine-containing compound biosynthetic process" GO:0030490 "ribosome biogenesis" GO:0002181 "translation" GO:0046112 "nucleobase biosynthetic process" GO:0046031 "purine nucleoside triphosphate metabolic process" GO:0006364 "ribosome biogenesis" Number of Biological process parent terms: methylation 1 mitochondrial translation 2 mitochondrion organization 1 ncRNA metabolic process 2 nucleobase biosynthetic process 1 purine nucleoside triphosphate metabolic process 9 pyrimidine-containing compound biosynthetic process 2 respiratory electron transport chain 10 ribosome biogenesis 5 translation 7 Molecular function parent terms of GO terms are: term GO:0003735 "structural constituent of ribosome" GO:0005198 "structural molecule activity" GO:0003723 "RNA binding" GO:0019843 "rRNA binding" GO:0016776 "phosphotransferase activity, phosphate group as acceptor" GO:0005347 "ATP transmembrane transporter activity" GO:0000295 "adenine nucleotide transmembrane transporter activity" GO:0005346 "purine ribonucleotide transmembrane transporter activity" parentTerm GO:0003735 "structural constituent of ribosome" GO:0005198 "structural constituent of ribosome" GO:0003723 "RNA binding" GO:0019843 "RNA binding" GO:0016776 "phosphotransferase activity, phosphate group as acceptor" GO:0005347 "ATP transmembrane transporter activity" GO:0000295 "ATP transmembrane transporter activity" GO:0005346 "ATP transmembrane transporter activity" Number of Molecular function parent terms: ATP transmembrane transporter activity 3 phosphotransferase activity, phosphate group as acceptor 1 RNA binding 2 structural constituent of ribosome 2 Cellular component parent terms of GO terms are: term GO:0005840 "ribosome" GO:1990904 "ribonucleoprotein complex" GO:0044391 "ribosomal subunit" GO:0015934 "large ribosomal subunit" GO:0005739 "mitochondrion" GO:0022626 "cytosolic ribosome" GO:0098798 "mitochondrial protein-containing complex" GO:0015935 "small ribosomal subunit" GO:0005761 "mitochondrial ribosome" GO:0000313 "organellar ribosome" GO:0005759 "mitochondrial matrix" GO:0022627 "cytosolic small ribosomal subunit" GO:0005740 "mitochondrial envelope" GO:0031966 "mitochondrial membrane" GO:0005762 "mitochondrial large ribosomal subunit" GO:0000315 "organellar large ribosomal subunit" GO:0005743 "mitochondrial inner membrane" GO:0022625 "cytosolic large ribosomal subunit" GO:0019866 "organelle inner membrane" GO:0005829 "cytosol" GO:0031975 "envelope" GO:0031967 "organelle envelope" GO:0098800 "inner mitochondrial membrane protein complex" GO:0070013 "intracellular organelle lumen" GO:0043233 "organelle lumen" GO:0031974 "membrane-enclosed lumen" GO:0098796 "membrane protein complex" GO:1902495 "transmembrane transporter complex" GO:0005746 "mitochondrial respirasome" GO:0070469 "respirasome" GO:1990351 "transporter complex" GO:0098803 "respiratory chain complex" parentTerm GO:0005840 "ribosome" GO:1990904 "ribonucleoprotein complex" GO:0044391 "ribosome" GO:0015934 "ribosome" GO:0005739 "mitochondrion" GO:0022626 "ribosome" GO:0098798 "mitochondrion" GO:0015935 "ribosome" GO:0005761 "ribosome" GO:0000313 "ribosome" GO:0005759 "mitochondrial matrix" GO:0022627 "ribosome" GO:0005740 "mitochondrial envelope" GO:0031966 "mitochondrial envelope" GO:0005762 "ribosome" GO:0000315 "ribosome" GO:0005743 "mitochondrial envelope" GO:0022625 "ribosome" GO:0019866 "mitochondrial envelope" GO:0005829 "cytosol" GO:0031975 "mitochondrial envelope" GO:0031967 "mitochondrial envelope" GO:0098800 "mitochondrion" GO:0070013 "mitochondrial matrix" GO:0043233 "mitochondrial matrix" GO:0031974 "mitochondrial matrix" GO:0098796 "ribonucleoprotein complex" GO:1902495 "transmembrane transporter complex" GO:0005746 "mitochondrial respirasome" GO:0070469 "mitochondrial respirasome" GO:1990351 "transmembrane transporter complex" GO:0098803 "mitochondrial respirasome" Number of Cellular component parent terms: cytosol mitochondrial envelope 1 6 mitochondrial matrix mitochondrial respirasome 4 3 mitochondrion ribonucleoprotein complex 3 2 ribosome transmembrane transporter complex 11 2 Number of GO terms for which NO parent term was found: 0 -------------------------------------------------------------- Number of enriched KEGG pathways: 1 KEGG pathways are: [1] "Ribosome - Aspergillus oryzae" ######################################################################################################################## Cluster number 8 Number of genes in cluster 8 is: 416 Genes in cluster 8 are: [1] "AO090001000035" "AO090001000036" "AO090001000037" "AO090001000049" [5] "AO090001000153" "AO090001000173" "AO090001000197" "AO090001000264" [9] "AO090001000304" "AO090001000377" "AO090001000412" "AO090001000486" [13] "AO090001000594" "AO090001000636" "AO090001000657" "AO090001000687" [17] "AO090003000040" "AO090003000051" "AO090003000144" "AO090003000192" [21] "AO090003000230" "AO090003000310" "AO090003000367" "AO090003000372" [25] "AO090003000426" "AO090003000439" "AO090003000457" "AO090003000465" [29] "AO090003000517" "AO090003000583" "AO090003000711" "AO090003000727" [33] "AO090003000801" "AO090003000807" "AO090003000813" "AO090003000818" [37] "AO090003000873" "AO090003000900" "AO090003000954" "AO090003000957" [41] "AO090003000960" "AO090003000968" "AO090003000980" "AO090003001006" [45] "AO090003001007" "AO090003001055" "AO090003001069" "AO090003001195" [49] "AO090003001215" "AO090003001237" "AO090003001281" "AO090003001327" [53] "AO090003001378" "AO090003001383" "AO090003001415" "AO090003001446" [57] "AO090003001520" "AO090005000003" "AO090005000072" "AO090005000099" [61] "AO090005000133" "AO090005000141" "AO090005000165" "AO090005000243" [65] "AO090005000304" "AO090005000372" "AO090005000407" "AO090005000449" [69] "AO090005000469" "AO090005000478" "AO090005000479" "AO090005000480" [73] "AO090005000481" "AO090005000493" "AO090005000495" "AO090005000535" [77] "AO090005000554" "AO090005000588" "AO090005000630" "AO090005000683" [81] "AO090005000735" "AO090005000738" "AO090005000770" "AO090005000788" [85] "AO090005000808" "AO090005000809" "AO090005000813" "AO090005000828" [89] "AO090005000830" "AO090005000975" "AO090005000986" "AO090005000995" [93] "AO090005001062" "AO090005001063" "AO090005001088" "AO090005001092" [97] "AO090005001093" "AO090005001094" "AO090005001108" "AO090005001164" [101] "AO090005001203" "AO090005001301" "AO090005001337" "AO090005001338" [105] "AO090005001340" "AO090005001349" "AO090005001355" "AO090005001356" [109] "AO090005001358" "AO090005001407" "AO090005001423" "AO090005001426" [113] "AO090005001427" "AO090005001498" "AO090005001501" "AO090005001508" [117] "AO090005001530" "AO090005001551" "AO090009000003" "AO090009000011" [121] "AO090009000047" "AO090009000053" "AO090009000107" "AO090009000109" [125] "AO090009000169" "AO090009000186" "AO090009000257" "AO090009000289" [129] "AO090009000305" "AO090009000342" "AO090009000344" "AO090009000355" [133] "AO090009000473" "AO090009000482" "AO090009000541" "AO090009000542" [137] "AO090009000544" "AO090009000577" "AO090009000590" "AO090009000630" [141] "AO090009000651" "AO090009000659" "AO090010000022" "AO090010000034" [145] "AO090010000063" "AO090010000125" "AO090010000126" "AO090010000127" [149] "AO090010000133" "AO090010000142" "AO090010000153" "AO090010000228" [153] "AO090010000229" "AO090010000236" "AO090010000240" "AO090010000242" [157] "AO090010000349" "AO090010000448" "AO090010000449" "AO090010000462" [161] "AO090010000469" "AO090010000470" "AO090010000541" "AO090010000576" [165] "AO090010000675" "AO090010000726" "AO090011000025" "AO090011000081" [169] "AO090011000154" "AO090011000176" "AO090011000208" "AO090011000209" [173] "AO090011000211" "AO090011000215" "AO090011000230" "AO090011000275" [177] "AO090011000331" "AO090011000343" "AO090011000408" "AO090011000416" [181] "AO090011000475" "AO090011000486" "AO090011000563" "AO090011000584" [185] "AO090011000587" "AO090011000656" "AO090011000685" "AO090011000694" [189] "AO090011000699" "AO090011000706" "AO090011000722" "AO090011000724" [193] "AO090011000770" "AO090011000778" "AO090011000823" "AO090011000838" [197] "AO090011000890" "AO090011000893" "AO090012000027" "AO090012000085" [201] "AO090012000103" "AO090012000173" "AO090012000212" "AO090012000281" [205] "AO090012000284" "AO090012000289" "AO090012000306" "AO090012000356" [209] "AO090012000409" "AO090012000411" "AO090012000416" "AO090012000452" [213] "AO090012000492" "AO090012000571" "AO090012000588" "AO090012000593" [217] "AO090012000632" "AO090012000633" "AO090012000714" "AO090012000757" [221] "AO090012000823" "AO090012000831" "AO090012000893" "AO090012000926" [225] "AO090012000928" "AO090012000973" "AO090012000976" "AO090012000982" [229] "AO090012000995" "AO090020000007" "AO090020000048" "AO090020000192" [233] "AO090020000246" "AO090020000262" "AO090020000265" "AO090020000287" [237] "AO090020000400" "AO090020000419" "AO090020000514" "AO090020000549" [241] "AO090020000564" "AO090020000602" "AO090020000644" "AO090020000677" [245] "AO090023000082" "AO090023000098" "AO090023000115" "AO090023000139" [249] "AO090023000141" "AO090023000147" "AO090023000237" "AO090023000335" [253] "AO090023000366" "AO090023000431" "AO090023000443" "AO090023000464" [257] "AO090023000478" "AO090023000516" "AO090023000557" "AO090023000570" [261] "AO090023000589" "AO090023000596" "AO090023000597" "AO090023000604" [265] "AO090023000611" "AO090023000646" "AO090023000648" "AO090023000662" [269] "AO090023000685" "AO090023000763" "AO090023000803" "AO090023000809" [273] "AO090023000820" "AO090023000874" "AO090023000886" "AO090023000889" [277] "AO090023000924" "AO090023000925" "AO090023000937" "AO090023000952" [281] "AO090026000213" "AO090026000291" "AO090026000332" "AO090026000346" [285] "AO090026000391" "AO090026000396" "AO090026000448" "AO090026000471" [289] "AO090026000472" "AO090026000492" "AO090026000511" "AO090026000557" [293] "AO090026000558" "AO090026000584" "AO090026000585" "AO090026000613" [297] "AO090026000617" "AO090026000638" "AO090026000708" "AO090026000718" [301] "AO090026000720" "AO090026000727" "AO090026000778" "AO090038000279" [305] "AO090038000339" "AO090038000369" "AO090038000402" "AO090038000417" [309] "AO090038000438" "AO090038000442" "AO090038000465" "AO090038000513" [313] "AO090038000514" "AO090038000547" "AO090038000553" "AO090038000625" [317] "AO090102000004" "AO090102000054" "AO090102000063" "AO090102000108" [321] "AO090102000135" "AO090102000161" "AO090102000162" "AO090102000219" [325] "AO090102000252" "AO090102000287" "AO090102000316" "AO090102000375" [329] "AO090102000392" "AO090102000418" "AO090102000423" "AO090102000429" [333] "AO090102000446" "AO090102000466" "AO090102000493" "AO090102000535" [337] "AO090102000586" "AO090102000589" "AO090102000602" "AO090102000608" [341] "AO090102000613" "AO090102000620" "AO090103000051" "AO090103000056" [345] "AO090103000074" "AO090103000076" "AO090103000082" "AO090103000178" [349] "AO090103000193" "AO090103000205" "AO090103000310" "AO090103000333" [353] "AO090103000335" "AO090103000346" "AO090103000479" "AO090103000485" [357] "AO090113000104" "AO090113000140" "AO090113000178" "AO090120000006" [361] "AO090120000022" "AO090120000034" "AO090120000112" "AO090120000145" [365] "AO090120000166" "AO090120000208" "AO090120000223" "AO090120000234" [369] "AO090120000258" "AO090120000264" "AO090120000297" "AO090120000318" [373] "AO090120000321" "AO090120000378" "AO090120000387" "AO090120000398" [377] "AO090120000424" "AO090120000439" "AO090120000486" "AO090120000502" [381] "AO090124000027" "AO090124000084" "AO090138000043" "AO090138000058" [385] "AO090138000102" "AO090138000103" "AO090166000034" "AO090166000054" [389] "AO090701000002" "AO090701000063" "AO090701000073" "AO090701000081" [393] "AO090701000129" "AO090701000171" "AO090701000193" "AO090701000215" [397] "AO090701000306" "AO090701000321" "AO090701000322" "AO090701000329" [401] "AO090701000338" "AO090701000403" "AO090701000519" "AO090701000550" [405] "AO090701000552" "AO090701000669" "AO090701000709" "AO090701000725" [409] "AO090701000756" "AO090701000790" "AO090701000818" "AO090701000820" [413] "AO090701000846" "AO090701000851" "AO090701000858" "AO090701000881" -------------------------------------------------------------- Number of enriched GO terms: 2 GO terms are: [1] "disulfide oxidoreductase activity" [2] "oxidoreductase activity, acting on a sulfur group of donors" Parent terms retrieved using org.Sc.sgd.db (S. cerevisiae) No Biological process parent terms found. Molecular function parent terms of GO terms are: term GO:0016667 "oxidoreductase activity, acting on a sulfur group of donors" GO:0015036 "disulfide oxidoreductase activity" parentTerm GO:0016667 "oxidoreductase activity, acting on a sulfur group of donors" GO:0015036 "oxidoreductase activity, acting on a sulfur group of donors" Number of Molecular function parent terms: oxidoreductase activity, acting on a sulfur group of donors 2 No Cellular component parent terms found. Number of GO terms for which NO parent term was found: 0 -------------------------------------------------------------- No enriched KEGG pathways. ######################################################################################################################## Cluster number 9 Number of genes in cluster 9 is: 550 Genes in cluster 9 are: [1] "AO090001000032" "AO090001000091" "AO090001000128" "AO090001000129" [5] "AO090001000136" "AO090001000137" "AO090001000144" "AO090001000159" [9] "AO090001000161" "AO090001000164" "AO090001000165" "AO090001000166" [13] "AO090001000167" "AO090001000194" "AO090001000199" "AO090001000217" [17] "AO090001000230" "AO090001000239" "AO090001000310" "AO090001000343" [21] "AO090001000371" "AO090001000379" "AO090001000441" "AO090001000445" [25] "AO090001000476" "AO090001000488" "AO090001000566" "AO090001000572" [29] "AO090001000573" "AO090001000637" "AO090001000640" "AO090001000689" [33] "AO090003000017" "AO090003000043" "AO090003000059" "AO090003000094" [37] "AO090003000124" "AO090003000126" "AO090003000236" "AO090003000248" [41] "AO090003000251" "AO090003000258" "AO090003000271" "AO090003000290" [45] "AO090003000309" "AO090003000332" "AO090003000333" "AO090003000363" [49] "AO090003000373" "AO090003000396" "AO090003000398" "AO090003000405" [53] "AO090003000412" "AO090003000474" "AO090003000502" "AO090003000506" [57] "AO090003000532" "AO090003000551" "AO090003000594" "AO090003000624" [61] "AO090003000625" "AO090003000631" "AO090003000635" "AO090003000654" [65] "AO090003000710" "AO090003000724" "AO090003000756" "AO090003000759" [69] "AO090003000779" "AO090003000780" "AO090003000840" "AO090003000919" [73] "AO090003000967" "AO090003000991" "AO090003001005" "AO090003001033" [77] "AO090003001054" "AO090003001108" "AO090003001124" "AO090003001126" [81] "AO090003001178" "AO090003001182" "AO090003001191" "AO090003001206" [85] "AO090003001231" "AO090003001238" "AO090003001276" "AO090003001299" [89] "AO090003001455" "AO090003001468" "AO090003001481" "AO090003001492" [93] "AO090003001495" "AO090003001550" "AO090005000063" "AO090005000138" [97] "AO090005000150" "AO090005000179" "AO090005000180" "AO090005000213" [101] "AO090005000214" "AO090005000216" "AO090005000227" "AO090005000233" [105] "AO090005000234" "AO090005000238" "AO090005000331" "AO090005000345" [109] "AO090005000360" "AO090005000361" "AO090005000394" "AO090005000414" [113] "AO090005000416" "AO090005000426" "AO090005000473" "AO090005000488" [117] "AO090005000497" "AO090005000503" "AO090005000511" "AO090005000556" [121] "AO090005000570" "AO090005000587" "AO090005000594" "AO090005000629" [125] "AO090005000641" "AO090005000649" "AO090005000679" "AO090005000715" [129] "AO090005000802" "AO090005000811" "AO090005000812" "AO090005000823" [133] "AO090005000838" "AO090005000843" "AO090005000868" "AO090005000898" [137] "AO090005000900" "AO090005000956" "AO090005000959" "AO090005000977" [141] "AO090005001075" "AO090005001149" "AO090005001162" "AO090005001165" [145] "AO090005001196" "AO090005001241" "AO090005001274" "AO090005001339" [149] "AO090005001365" "AO090005001397" "AO090005001403" "AO090005001429" [153] "AO090005001430" "AO090005001529" "AO090005001531" "AO090005001544" [157] "AO090005001553" "AO090005001560" "AO090005001578" "AO090005001603" [161] "AO090005001616" "AO090005001634" "AO090009000094" "AO090009000115" [165] "AO090009000153" "AO090009000179" "AO090009000180" "AO090009000199" [169] "AO090009000260" "AO090009000273" "AO090009000304" "AO090009000334" [173] "AO090009000350" "AO090009000351" "AO090009000352" "AO090009000365" [177] "AO090009000418" "AO090009000465" "AO090009000495" "AO090009000537" [181] "AO090009000539" "AO090009000557" "AO090009000558" "AO090009000560" [185] "AO090009000561" "AO090009000563" "AO090009000595" "AO090009000598" [189] "AO090009000665" "AO090010000001" "AO090010000002" "AO090010000047" [193] "AO090010000056" "AO090010000070" "AO090010000073" "AO090010000077" [197] "AO090010000078" "AO090010000079" "AO090010000083" "AO090010000085" [201] "AO090010000098" "AO090010000141" "AO090010000155" "AO090010000156" [205] "AO090010000160" "AO090010000166" "AO090010000232" "AO090010000249" [209] "AO090010000317" "AO090010000361" "AO090010000401" "AO090010000450" [213] "AO090010000452" "AO090010000454" "AO090010000492" "AO090010000493" [217] "AO090010000533" "AO090010000538" "AO090010000540" "AO090010000579" [221] "AO090010000668" "AO090010000672" "AO090010000674" "AO090010000681" [225] "AO090010000694" "AO090010000695" "AO090010000696" "AO090010000707" [229] "AO090010000708" "AO090010000717" "AO090010000734" "AO090011000028" [233] "AO090011000059" "AO090011000086" "AO090011000102" "AO090011000104" [237] "AO090011000108" "AO090011000129" "AO090011000132" "AO090011000143" [241] "AO090011000174" "AO090011000177" "AO090011000204" "AO090011000205" [245] "AO090011000206" "AO090011000213" "AO090011000217" "AO090011000221" [249] "AO090011000309" "AO090011000329" "AO090011000356" "AO090011000419" [253] "AO090011000576" "AO090011000617" "AO090011000633" "AO090011000634" [257] "AO090011000637" "AO090011000669" "AO090011000670" "AO090011000687" [261] "AO090011000688" "AO090011000723" "AO090011000728" "AO090011000734" [265] "AO090011000763" "AO090011000769" "AO090011000863" "AO090011000879" [269] "AO090011000913" "AO090011000920" "AO090012000055" "AO090012000082" [273] "AO090012000083" "AO090012000087" "AO090012000129" "AO090012000131" [277] "AO090012000163" "AO090012000208" "AO090012000242" "AO090012000247" [281] "AO090012000277" "AO090012000278" "AO090012000295" "AO090012000344" [285] "AO090012000353" "AO090012000369" "AO090012000371" "AO090012000395" [289] "AO090012000432" "AO090012000448" "AO090012000454" "AO090012000481" [293] "AO090012000511" "AO090012000520" "AO090012000521" "AO090012000551" [297] "AO090012000582" "AO090012000595" "AO090012000658" "AO090012000670" [301] "AO090012000764" "AO090012000817" "AO090012000818" "AO090012000848" [305] "AO090012000851" "AO090012000869" "AO090012000883" "AO090012000977" [309] "AO090012000978" "AO090020000006" "AO090020000035" "AO090020000051" [313] "AO090020000083" "AO090020000084" "AO090020000107" "AO090020000152" [317] "AO090020000166" "AO090020000169" "AO090020000193" "AO090020000256" [321] "AO090020000375" "AO090020000381" "AO090020000389" "AO090020000390" [325] "AO090020000405" "AO090020000424" "AO090020000425" "AO090020000433" [329] "AO090020000448" "AO090020000479" "AO090020000544" "AO090020000550" [333] "AO090020000603" "AO090020000621" "AO090020000623" "AO090020000632" [337] "AO090020000687" "AO090020000688" "AO090020000689" "AO090020000690" [341] "AO090020000710" "AO090023000015" "AO090023000021" "AO090023000042" [345] "AO090023000087" "AO090023000096" "AO090023000119" "AO090023000149" [349] "AO090023000150" "AO090023000153" "AO090023000168" "AO090023000200" [353] "AO090023000201" "AO090023000203" "AO090023000260" "AO090023000353" [357] "AO090023000365" "AO090023000377" "AO090023000378" "AO090023000424" [361] "AO090023000430" "AO090023000440" "AO090023000460" "AO090023000526" [365] "AO090023000578" "AO090023000579" "AO090023000581" "AO090023000588" [369] "AO090023000591" "AO090023000592" "AO090023000623" "AO090023000637" [373] "AO090023000664" "AO090023000700" "AO090023000733" "AO090023000745" [377] "AO090023000871" "AO090023000887" "AO090023000909" "AO090023000916" [381] "AO090026000011" "AO090026000018" "AO090026000065" "AO090026000075" [385] "AO090026000081" "AO090026000192" "AO090026000220" "AO090026000221" [389] "AO090026000247" "AO090026000276" "AO090026000290" "AO090026000330" [393] "AO090026000373" "AO090026000378" "AO090026000385" "AO090026000404" [397] "AO090026000429" "AO090026000430" "AO090026000487" "AO090026000506" [401] "AO090026000525" "AO090026000556" "AO090026000600" "AO090026000609" [405] "AO090026000661" "AO090026000707" "AO090026000715" "AO090026000764" [409] "AO090026000807" "AO090026000832" "AO090026000833" "AO090038000019" [413] "AO090038000020" "AO090038000091" "AO090038000092" "AO090038000103" [417] "AO090038000210" "AO090038000321" "AO090038000329" "AO090038000361" [421] "AO090038000404" "AO090038000425" "AO090038000462" "AO090038000469" [425] "AO090038000558" "AO090038000587" "AO090038000590" "AO090038000603" [429] "AO090102000015" "AO090102000049" "AO090102000056" "AO090102000073" [433] "AO090102000107" "AO090102000109" "AO090102000160" "AO090102000205" [437] "AO090102000243" "AO090102000337" "AO090102000345" "AO090102000370" [441] "AO090102000376" "AO090102000422" "AO090102000425" "AO090102000427" [445] "AO090102000428" "AO090102000435" "AO090102000436" "AO090102000438" [449] "AO090102000439" "AO090102000440" "AO090103000064" "AO090103000214" [453] "AO090103000276" "AO090103000321" "AO090103000322" "AO090103000329" [457] "AO090103000353" "AO090103000356" "AO090103000362" "AO090103000396" [461] "AO090103000416" "AO090103000417" "AO090103000456" "AO090113000070" [465] "AO090113000073" "AO090113000109" "AO090113000110" "AO090113000153" [469] "AO090113000154" "AO090113000157" "AO090113000184" "AO090120000003" [473] "AO090120000111" "AO090120000122" "AO090120000123" "AO090120000235" [477] "AO090120000273" "AO090120000322" "AO090120000350" "AO090120000361" [481] "AO090120000366" "AO090120000369" "AO090120000379" "AO090120000384" [485] "AO090120000385" "AO090120000435" "AO090120000442" "AO090120000447" [489] "AO090120000504" "AO090124000014" "AO090124000025" "AO090124000046" [493] "AO090124000077" "AO090138000024" "AO090138000026" "AO090138000099" [497] "AO090138000100" "AO090138000134" "AO090138000136" "AO090138000137" [501] "AO090138000138" "AO090138000143" "AO090138000145" "AO090138000149" [505] "AO090138000155" "AO090138000156" "AO090138000192" "AO090138000193" [509] "AO090138000195" "AO090166000026" "AO090166000059" "AO090166000087" [513] "AO090166000097" "AO090166000098" "AO090166000122" "AO090206000016" [517] "AO090701000158" "AO090701000190" "AO090701000224" "AO090701000252" [521] "AO090701000254" "AO090701000268" "AO090701000269" "AO090701000285" [525] "AO090701000310" "AO090701000324" "AO090701000328" "AO090701000343" [529] "AO090701000382" "AO090701000424" "AO090701000425" "AO090701000429" [533] "AO090701000480" "AO090701000494" "AO090701000517" "AO090701000613" [537] "AO090701000664" "AO090701000675" "AO090701000682" "AO090701000691" [541] "AO090701000706" "AO090701000710" "AO090701000727" "AO090701000773" [545] "AO090701000821" "AO090701000822" "AO090701000827" "AO090701000844" [549] "AO090701000876" "AO090701000895" -------------------------------------------------------------- Number of enriched GO terms: 2 GO terms are: [1] "GO:0050662" "EC:1.6" Parent terms retrieved using org.Sc.sgd.db (S. cerevisiae) No Biological process parent terms found. No Molecular function parent terms found. No Cellular component parent terms found. Number of GO terms for which NO parent term was found: 2 No parent term was found for the following GO terms: [1] "GO:0050662" "EC:1.6" -------------------------------------------------------------- Number of enriched KEGG pathways: 1 KEGG pathways are: [1] "Glutathione metabolism - Aspergillus oryzae" ######################################################################################################################## Cluster number 10 Number of genes in cluster 10 is: 396 Genes in cluster 10 are: [1] "AO090001000070" "AO090001000093" "AO090001000094" "AO090001000177" [5] "AO090001000178" "AO090001000225" "AO090001000282" "AO090001000296" [9] "AO090001000297" "AO090001000355" "AO090001000415" "AO090001000487" [13] "AO090001000560" "AO090001000587" "AO090001000592" "AO090001000629" [17] "AO090001000638" "AO090001000663" "AO090001000692" "AO090001000726" [21] "AO090001000736" "AO090001000750" "AO090003000008" "AO090003000029" [25] "AO090003000047" "AO090003000049" "AO090003000066" "AO090003000067" [29] "AO090003000108" "AO090003000154" "AO090003000206" "AO090003000207" [33] "AO090003000252" "AO090003000262" "AO090003000307" "AO090003000379" [37] "AO090003000413" "AO090003000458" "AO090003000481" "AO090003000498" [41] "AO090003000540" "AO090003000556" "AO090003000557" "AO090003000562" [45] "AO090003000602" "AO090003000603" "AO090003000632" "AO090003000633" [49] "AO090003000644" "AO090003000648" "AO090003000681" "AO090003000686" [53] "AO090003000694" "AO090003000723" "AO090003000737" "AO090003000748" [57] "AO090003000770" "AO090003000791" "AO090003000839" "AO090003000907" [61] "AO090003000939" "AO090003000959" "AO090003000970" "AO090003000996" [65] "AO090003001004" "AO090003001020" "AO090003001092" "AO090003001094" [69] "AO090003001145" "AO090003001146" "AO090003001164" "AO090003001170" [73] "AO090003001183" "AO090003001184" "AO090003001242" "AO090003001244" [77] "AO090003001249" "AO090003001294" "AO090005000076" "AO090005000077" [81] "AO090005000092" "AO090005000142" "AO090005000162" "AO090005000218" [85] "AO090005000264" "AO090005000300" "AO090005000312" "AO090005000433" [89] "AO090005000460" "AO090005000568" "AO090005000569" "AO090005000591" [93] "AO090005000597" "AO090005000598" "AO090005000627" "AO090005000650" [97] "AO090005000653" "AO090005000669" "AO090005000739" "AO090005000804" [101] "AO090005000837" "AO090005000934" "AO090005000941" "AO090005001031" [105] "AO090005001060" "AO090005001097" "AO090005001143" "AO090005001228" [109] "AO090005001244" "AO090005001247" "AO090005001253" "AO090005001296" [113] "AO090005001341" "AO090005001346" "AO090005001374" "AO090005001394" [117] "AO090005001490" "AO090005001512" "AO090005001548" "AO090005001569" [121] "AO090005001614" "AO090005001623" "AO090005001624" "AO090005001636" [125] "AO090005001646" "AO090005001652" "AO090009000050" "AO090009000163" [129] "AO090009000168" "AO090009000225" "AO090009000228" "AO090009000293" [133] "AO090009000337" "AO090009000339" "AO090009000397" "AO090009000434" [137] "AO090009000468" "AO090009000480" "AO090009000492" "AO090009000602" [141] "AO090009000622" "AO090009000626" "AO090009000632" "AO090009000654" [145] "AO090009000708" "AO090010000031" "AO090010000048" "AO090010000059" [149] "AO090010000074" "AO090010000120" "AO090010000211" "AO090010000221" [153] "AO090010000314" "AO090010000360" "AO090010000410" "AO090010000442" [157] "AO090010000445" "AO090010000447" "AO090010000461" "AO090010000505" [161] "AO090010000715" "AO090010000716" "AO090010000723" "AO090010000777" [165] "AO090011000201" "AO090011000266" "AO090011000327" "AO090011000342" [169] "AO090011000344" "AO090011000365" "AO090011000381" "AO090011000488" [173] "AO090011000503" "AO090011000605" "AO090011000607" "AO090011000653" [177] "AO090011000698" "AO090011000716" "AO090011000720" "AO090011000759" [181] "AO090011000760" "AO090011000761" "AO090011000773" "AO090011000832" [185] "AO090011000875" "AO090012000132" "AO090012000156" "AO090012000168" [189] "AO090012000239" "AO090012000245" "AO090012000255" "AO090012000272" [193] "AO090012000290" "AO090012000301" "AO090012000303" "AO090012000352" [197] "AO090012000403" "AO090012000463" "AO090012000485" "AO090012000495" [201] "AO090012000516" "AO090012000546" "AO090012000585" "AO090012000587" [205] "AO090012000610" "AO090012000729" "AO090012000768" "AO090012000777" [209] "AO090012000949" "AO090012000951" "AO090012000975" "AO090012001016" [213] "AO090012001017" "AO090012001025" "AO090012001026" "AO090020000003" [217] "AO090020000024" "AO090020000070" "AO090020000091" "AO090020000103" [221] "AO090020000114" "AO090020000191" "AO090020000199" "AO090020000206" [225] "AO090020000208" "AO090020000221" "AO090020000320" "AO090020000330" [229] "AO090020000345" "AO090020000396" "AO090020000412" "AO090020000415" [233] "AO090020000482" "AO090020000490" "AO090020000497" "AO090020000516" [237] "AO090020000554" "AO090020000594" "AO090020000645" "AO090020000668" [241] "AO090020000669" "AO090020t00005" "AO090023000040" "AO090023000114" [245] "AO090023000222" "AO090023000273" "AO090023000304" "AO090023000312" [249] "AO090023000319" "AO090023000320" "AO090023000321" "AO090023000432" [253] "AO090023000472" "AO090023000487" "AO090023000492" "AO090023000625" [257] "AO090023000626" "AO090023000653" "AO090023000654" "AO090023000657" [261] "AO090023000687" "AO090023000778" "AO090023000779" "AO090023000807" [265] "AO090023000832" "AO090023000845" "AO090023000857" "AO090023000883" [269] "AO090023000893" "AO090023000908" "AO090023000915" "AO090023t00013" [273] "AO090026000133" "AO090026000139" "AO090026000164" "AO090026000179" [277] "AO090026000204" "AO090026000212" "AO090026000237" "AO090026000248" [281] "AO090026000277" "AO090026000293" "AO090026000343" "AO090026000417" [285] "AO090026000452" "AO090026000473" "AO090026000507" "AO090026000518" [289] "AO090026000529" "AO090026000554" "AO090026000571" "AO090026000573" [293] "AO090026000628" "AO090026000633" "AO090026000634" "AO090026000635" [297] "AO090026000703" "AO090026000719" "AO090026000730" "AO090026000787" [301] "AO090026000793" "AO090026000803" "AO090026000820" "AO090026t00010" [305] "AO090038000064" "AO090038000214" "AO090038000215" "AO090038000228" [309] "AO090038000247" "AO090038000282" "AO090038000286" "AO090038000290" [313] "AO090038000359" "AO090038000441" "AO090038000467" "AO090038000504" [317] "AO090038000535" "AO090038000564" "AO090102000148" "AO090102000167" [321] "AO090102000290" "AO090102000482" "AO090102000497" "AO090102000505" [325] "AO090102000507" "AO090102000515" "AO090102000527" "AO090102000539" [329] "AO090102000552" "AO090102000570" "AO090102000580" "AO090102000592" [333] "AO090102000635" "AO090103000108" "AO090103000128" "AO090103000133" [337] "AO090103000219" "AO090103000220" "AO090103000221" "AO090103000387" [341] "AO090103000424" "AO090103000430" "AO090113000036" "AO090113000079" [345] "AO090113000147" "AO090120000068" "AO090120000093" "AO090120000105" [349] "AO090120000113" "AO090120000183" "AO090120000193" "AO090120000203" [353] "AO090120000256" "AO090120000338" "AO090120000340" "AO090120000364" [357] "AO090120000396" "AO090120000479" "AO090120000484" "AO090120000499" [361] "AO090120000506" "AO090124000085" "AO090138000023" "AO090138000025" [365] "AO090138000059" "AO090138000060" "AO090138000084" "AO090138000190" [369] "AO090166000047" "AO090206000070" "AO090206000106" "AO090206000108" [373] "AO090206r00001" "AO090206r00003" "AO090701000027" "AO090701000131" [377] "AO090701000138" "AO090701000217" "AO090701000225" "AO090701000266" [381] "AO090701000267" "AO090701000273" "AO090701000401" "AO090701000402" [385] "AO090701000441" "AO090701000504" "AO090701000588" "AO090701000657" [389] "AO090701000671" "AO090701000678" "AO090701000699" "AO090701000741" [393] "AO090701000742" "AO090701000750" "AO090701000757" "AO090701000859" -------------------------------------------------------------- No enriched GO terms. -------------------------------------------------------------- No enriched KEGG pathways. ######################################################################################################################## Cluster number 11 Number of genes in cluster 11 is: 155 Genes in cluster 11 are: [1] "AO090001000083" "AO090001000141" "AO090001000142" "AO090001000207" [5] "AO090001000383" "AO090001000406" "AO090001000451" "AO090001000459" [9] "AO090001000495" "AO090001000507" "AO090001000508" "AO090001000531" [13] "AO090003000107" "AO090003000109" "AO090003000162" "AO090003000219" [17] "AO090003000507" "AO090003000720" "AO090003000768" "AO090003000904" [21] "AO090003000942" "AO090003001050" "AO090003001367" "AO090003001385" [25] "AO090003001465" "AO090003001519" "AO090003001536" "AO090003001537" [29] "AO090005000023" "AO090005000061" "AO090005000062" "AO090005000104" [33] "AO090005000250" "AO090005000327" "AO090005000330" "AO090005000367" [37] "AO090005000528" "AO090005000585" "AO090005000697" "AO090005000939" [41] "AO090005000940" "AO090005001488" "AO090005001489" "AO090009000067" [45] "AO090009000100" "AO090009000124" "AO090009000125" "AO090009000162" [49] "AO090009000502" "AO090009000600" "AO090010000065" "AO090010000100" [53] "AO090010000136" "AO090010000238" "AO090010000300" "AO090010000501" [57] "AO090010000543" "AO090010000544" "AO090010000645" "AO090010000666" [61] "AO090011000007" "AO090011000044" "AO090011000046" "AO090011000049" [65] "AO090011000385" "AO090011000450" "AO090011000451" "AO090011000501" [69] "AO090011000601" "AO090011000751" "AO090011000860" "AO090012000263" [73] "AO090012000351" "AO090012000470" "AO090012000471" "AO090012000590" [77] "AO090012000646" "AO090012000667" "AO090012000689" "AO090012000690" [81] "AO090012000699" "AO090012000739" "AO090012000884" "AO090020000066" [85] "AO090020000137" "AO090020000195" "AO090020000212" "AO090020000282" [89] "AO090020000283" "AO090020000357" "AO090020000404" "AO090020000500" [93] "AO090020000533" "AO090020000640" "AO090020000684" "AO090020000685" [97] "AO090023000089" "AO090023000158" "AO090023000159" "AO090023000176" [101] "AO090023000177" "AO090023000179" "AO090023000180" "AO090023000207" [105] "AO090023000224" "AO090023000263" "AO090023000308" "AO090023000383" [109] "AO090023000384" "AO090023000414" "AO090023000513" "AO090023000514" [113] "AO090023000847" "AO090026000100" "AO090026000476" "AO090026000508" [117] "AO090026000524" "AO090026000544" "AO090026000545" "AO090026000562" [121] "AO090026000607" "AO090038000185" "AO090038000204" "AO090038000205" [125] "AO090038000338" "AO090102000102" "AO090102000213" "AO090102000356" [129] "AO090102000453" "AO090102000454" "AO090102000508" "AO090102000554" [133] "AO090102000564" "AO090103000078" "AO090103000087" "AO090103000123" [137] "AO090103000160" "AO090103000218" "AO090103000301" "AO090103000421" [141] "AO090103000434" "AO090120000027" "AO090120000451" "AO090124000019" [145] "AO090138000019" "AO090138000119" "AO090206000052" "AO090206000074" [149] "AO090672000009" "AO090701000255" "AO090701000271" "AO090701000621" [153] "AO090701000642" "AO090701000723" "AO090701000733" -------------------------------------------------------------- No enriched GO terms. -------------------------------------------------------------- No enriched KEGG pathways. ######################################################################################################################## Cluster number 12 Number of genes in cluster 12 is: 221 Genes in cluster 12 are: [1] "AO090001000015" "AO090001000017" "AO090001000069" "AO090001000146" [5] "AO090001000147" "AO090001000148" "AO090001000174" "AO090001000403" [9] "AO090001000564" "AO090001000681" "AO090001000698" "AO090001000699" [13] "AO090001000706" "AO090001000733" "AO090003000036" "AO090003000038" [17] "AO090003000064" "AO090003000167" "AO090003000196" "AO090003000253" [21] "AO090003000356" "AO090003000404" "AO090003000414" "AO090003000587" [25] "AO090003000640" "AO090003000672" "AO090003000776" "AO090003000808" [29] "AO090003000846" "AO090003000853" "AO090003000854" "AO090003000870" [33] "AO090003000892" "AO090003000940" "AO090003000995" "AO090003001070" [37] "AO090003001169" "AO090003001175" "AO090003001236" "AO090003001283" [41] "AO090003001357" "AO090003001358" "AO090003001359" "AO090003001360" [45] "AO090003001482" "AO090005000160" "AO090005000223" "AO090005000347" [49] "AO090005000353" "AO090005000531" "AO090005000543" "AO090005000560" [53] "AO090005000561" "AO090005000691" "AO090005000852" "AO090005000955" [57] "AO090005001105" "AO090005001199" "AO090005001204" "AO090005001212" [61] "AO090005001238" "AO090005001262" "AO090005001278" "AO090005001299" [65] "AO090005001436" "AO090005001437" "AO090005001472" "AO090009000181" [69] "AO090009000235" "AO090009000262" "AO090009000456" "AO090009000579" [73] "AO090009000686" "AO090010000040" "AO090010000062" "AO090010000193" [77] "AO090010000202" "AO090010000204" "AO090010000219" "AO090010000353" [81] "AO090010000431" "AO090010000480" "AO090010000608" "AO090010000615" [85] "AO090010000737" "AO090011000020" "AO090011000062" "AO090011000068" [89] "AO090011000112" "AO090011000116" "AO090011000162" "AO090011000231" [93] "AO090011000320" "AO090011000332" "AO090011000359" "AO090011000363" [97] "AO090011000460" "AO090011000515" "AO090011000535" "AO090011000874" [101] "AO090012000149" "AO090012000201" "AO090012000565" "AO090012000673" [105] "AO090012000842" "AO090012000853" "AO090012000966" "AO090012000988" [109] "AO090020000110" "AO090020000355" "AO090020000364" "AO090020000410" [113] "AO090020000636" "AO090020000638" "AO090020000683" "AO090023000031" [117] "AO090023000193" "AO090023000194" "AO090023000245" "AO090023000272" [121] "AO090023000303" "AO090023000307" "AO090023000316" "AO090023000373" [125] "AO090023000382" "AO090023000411" "AO090023000413" "AO090023000441" [129] "AO090023000461" "AO090023000497" "AO090023000506" "AO090023000585" [133] "AO090023000735" "AO090023000834" "AO090023000865" "AO090023000958" [137] "AO090026000056" "AO090026000077" "AO090026000120" "AO090026000130" [141] "AO090026000144" "AO090026000158" "AO090026000255" "AO090026000299" [145] "AO090026000315" "AO090026000362" "AO090026000422" "AO090026000451" [149] "AO090026000455" "AO090026000526" "AO090026000725" "AO090038000077" [153] "AO090038000096" "AO090038000161" "AO090038000162" "AO090038000206" [157] "AO090038000242" "AO090038000243" "AO090038000314" "AO090038000317" [161] "AO090038000347" "AO090038000406" "AO090038000413" "AO090102000022" [165] "AO090102000043" "AO090102000052" "AO090102000145" "AO090102000146" [169] "AO090102000223" "AO090102000358" "AO090102000393" "AO090102000494" [173] "AO090102000545" "AO090102000546" "AO090102000549" "AO090103000044" [177] "AO090103000048" "AO090103000054" "AO090103000206" "AO090103000212" [181] "AO090103000244" "AO090103000309" "AO090103000311" "AO090103000367" [185] "AO090103000433" "AO090103000463" "AO090113000010" "AO090113000051" [189] "AO090113000060" "AO090113000091" "AO090113000146" "AO090113000181" [193] "AO090120000172" "AO090120000176" "AO090120000188" "AO090120000309" [197] "AO090120000422" "AO090120000454" "AO090138000161" "AO090166000107" [201] "AO090206000049" "AO090701000076" "AO090701000077" "AO090701000126" [205] "AO090701000206" "AO090701000209" "AO090701000302" "AO090701000303" [209] "AO090701000500" "AO090701000511" "AO090701000533" "AO090701000535" [213] "AO090701000537" "AO090701000538" "AO090701000539" "AO090701000566" [217] "AO090701000582" "AO090701000612" "AO090701000748" "AO090701000797" [221] "AO090701000798" -------------------------------------------------------------- Number of enriched GO terms: 6 GO terms are: [1] "endoplasmic reticulum" [2] "endoplasmic reticulum membrane" [3] "nuclear outer membrane-endoplasmic reticulum membrane network" [4] "endoplasmic reticulum subcompartment" [5] "organelle subcompartment" [6] "endomembrane system" Parent terms retrieved using org.Sc.sgd.db (S. cerevisiae) No Biological process parent terms found. No Molecular function parent terms found. Cellular component parent terms of GO terms are: term GO:0098827 "endoplasmic reticulum subcompartment" GO:0005783 "endoplasmic reticulum" GO:0042175 "nuclear outer membrane-endoplasmic reticulum membrane network" GO:0005789 "endoplasmic reticulum membrane" GO:0031984 "organelle subcompartment" GO:0012505 "endomembrane system" parentTerm GO:0098827 "endoplasmic reticulum subcompartment" GO:0005783 "endoplasmic reticulum" GO:0042175 "endoplasmic reticulum" GO:0005789 "endoplasmic reticulum" GO:0031984 "endoplasmic reticulum subcompartment" GO:0012505 "endoplasmic reticulum" Number of Cellular component parent terms: endoplasmic reticulum endoplasmic reticulum subcompartment 4 2 Number of GO terms for which NO parent term was found: 0 -------------------------------------------------------------- Number of enriched KEGG pathways: 1 KEGG pathways are: [1] "Protein processing in endoplasmic reticulum - Aspergillus oryzae" ######################################################################################################################## Cluster number 13 Number of genes in cluster 13 is: 187 Genes in cluster 13 are: [1] "AO090001000030" "AO090001000058" "AO090001000152" "AO090001000169" [5] "AO090001000196" "AO090001000240" "AO090001000312" "AO090001000366" [9] "AO090001000454" "AO090001000634" "AO090001000707" "AO090003000215" [13] "AO090003000221" "AO090003000257" "AO090003000268" "AO090003000431" [17] "AO090003000611" "AO090003000802" "AO090003000814" "AO090003000868" [21] "AO090003000879" "AO090003000927" "AO090003001053" "AO090003001087" [25] "AO090003001239" "AO090003001406" "AO090003001473" "AO090003001475" [29] "AO090003001500" "AO090003001549" "AO090005000074" "AO090005000161" [33] "AO090005000166" "AO090005000188" "AO090005000355" "AO090005000455" [37] "AO090005000489" "AO090005000504" "AO090005000513" "AO090005000515" [41] "AO090005000545" "AO090005000547" "AO090005000690" "AO090005000694" [45] "AO090005001122" "AO090005001180" "AO090005001191" "AO090005001211" [49] "AO090005001222" "AO090005001311" "AO090005001317" "AO090005001354" [53] "AO090005001439" "AO090005001444" "AO090005001464" "AO090005001467" [57] "AO090009000014" "AO090009000093" "AO090009000099" "AO090009000275" [61] "AO090009000313" "AO090009000400" "AO090009000522" "AO090009000523" [65] "AO090009000567" "AO090009000681" "AO090010000030" "AO090010000253" [69] "AO090010000280" "AO090010000292" "AO090010000311" "AO090010000321" [73] "AO090010000333" "AO090010000345" "AO090010000346" "AO090010000485" [77] "AO090010000487" "AO090010000632" "AO090010000705" "AO090011000126" [81] "AO090011000134" "AO090011000186" "AO090011000187" "AO090011000289" [85] "AO090011000410" "AO090011000411" "AO090011000412" "AO090011000415" [89] "AO090011000417" "AO090011000499" "AO090011000649" "AO090011000926" [93] "AO090012000071" "AO090012000086" "AO090012000110" "AO090012000169" [97] "AO090012000186" "AO090012000310" "AO090012000315" "AO090012000366" [101] "AO090012000528" "AO090012000622" "AO090012000623" "AO090012000624" [105] "AO090012000625" "AO090012000626" "AO090012000773" "AO090012000800" [109] "AO090012000812" "AO090012000814" "AO090012000855" "AO090012000932" [113] "AO090020000205" "AO090020000209" "AO090020000339" "AO090020000420" [117] "AO090020000468" "AO090020000686" "AO090023000058" "AO090023000116" [121] "AO090023000161" "AO090023000188" "AO090023000479" "AO090023000771" [125] "AO090023000843" "AO090023000876" "AO090023000923" "AO090023000991" [129] "AO090026000055" "AO090026000298" "AO090026000361" "AO090026000428" [133] "AO090026000601" "AO090026000662" "AO090026000766" "AO090026000815" [137] "AO090038000076" "AO090038000111" "AO090038000126" "AO090038000146" [141] "AO090038000194" "AO090038000382" "AO090038000426" "AO090038000466" [145] "AO090038000482" "AO090038000483" "AO090038000511" "AO090102000035" [149] "AO090102000036" "AO090102000071" "AO090102000378" "AO090102000458" [153] "AO090102000577" "AO090102000585" "AO090102000599" "AO090103000069" [157] "AO090103000138" "AO090103000151" "AO090103000165" "AO090103000168" [161] "AO090103000170" "AO090103000303" "AO090103000338" "AO090103000348" [165] "AO090103000384" "AO090120000132" "AO090120000175" "AO090120000215" [169] "AO090120000217" "AO090120000339" "AO090120000471" "AO090138000082" [173] "AO090166000048" "AO090166000084" "AO090701000147" "AO090701000183" [177] "AO090701000221" "AO090701000222" "AO090701000231" "AO090701000344" [181] "AO090701000412" "AO090701000615" "AO090701000616" "AO090701000617" [185] "AO090701000618" "AO090701000717" "AO090701000730" -------------------------------------------------------------- Number of enriched GO terms: 3 GO terms are: [1] "nitrogen cycle metabolic process" [2] "protein transporter activity" [3] "reactive nitrogen species metabolic process" Parent terms retrieved using org.Sc.sgd.db (S. cerevisiae) Biological process parent terms of GO terms are: term GO:0071941 "nitrogen cycle metabolic process" GO:2001057 "reactive nitrogen species metabolic process" parentTerm GO:0071941 "nitrogen cycle metabolic process" GO:2001057 "reactive nitrogen species metabolic process" Number of Biological process parent terms: nitrogen cycle metabolic process 1 reactive nitrogen species metabolic process 1 No Molecular function parent terms found. No Cellular component parent terms found. Number of GO terms for which NO parent term was found: 1 No parent term was found for the following GO terms: [1] "protein transporter activity" -------------------------------------------------------------- Number of enriched KEGG pathways: 1 KEGG pathways are: [1] "Protein processing in endoplasmic reticulum - Aspergillus oryzae" ######################################################################################################################## Cluster number 14 Number of genes in cluster 14 is: 193 Genes in cluster 14 are: [1] "AO090001000154" "AO090001000428" "AO090001000552" "AO090001000569" [5] "AO090001000653" "AO090001000704" "AO090001000740" "AO090003000012" [9] "AO090003000080" "AO090003000088" "AO090003000096" "AO090003000132" [13] "AO090003000282" "AO090003000289" "AO090003000314" "AO090003000462" [17] "AO090003000470" "AO090003000512" "AO090003000728" "AO090003000804" [21] "AO090003000811" "AO090003000847" "AO090003000856" "AO090003000857" [25] "AO090003000943" "AO090003001023" "AO090003001172" "AO090003001174" [29] "AO090003001198" "AO090003001254" "AO090003001339" "AO090003001400" [33] "AO090003001463" "AO090003001489" "AO090005000051" "AO090005000132" [37] "AO090005000605" "AO090005000919" "AO090005001042" "AO090005001057" [41] "AO090005001071" "AO090005001076" "AO090005001110" "AO090005001142" [45] "AO090005001177" "AO090005001362" "AO090005001392" "AO090005001396" [49] "AO090005001438" "AO090005001443" "AO090005001504" "AO090005001519" [53] "AO090005001541" "AO090005001591" "AO090005001611" "AO090005001612" [57] "AO090009000122" "AO090009000146" "AO090009000261" "AO090009000363" [61] "AO090009000402" "AO090009000422" "AO090009000430" "AO090009000440" [65] "AO090009000442" "AO090010000095" "AO090010000192" "AO090010000214" [69] "AO090010000227" "AO090011000071" "AO090011000072" "AO090011000122" [73] "AO090011000130" "AO090011000166" "AO090011000170" "AO090011000172" [77] "AO090011000233" "AO090011000421" "AO090011000468" "AO090011000471" [81] "AO090011000492" "AO090011000497" "AO090011000518" "AO090011000542" [85] "AO090011000551" "AO090011000552" "AO090011000755" "AO090011000771" [89] "AO090011000881" "AO090012000088" "AO090012000203" "AO090012000211" [93] "AO090012000410" "AO090012000431" "AO090012000443" "AO090012000532" [97] "AO090012000574" "AO090012000583" "AO090012000637" "AO090012000778" [101] "AO090012000805" "AO090012000827" "AO090012000887" "AO090012000942" [105] "AO090012000959" "AO090012001012" "AO090020000111" "AO090020000112" [109] "AO090020000113" "AO090020000342" "AO090020000418" "AO090020000459" [113] "AO090020000470" "AO090020000545" "AO090020000591" "AO090020000614" [117] "AO090020000615" "AO090020000616" "AO090020000626" "AO090020000635" [121] "AO090020000652" "AO090020000657" "AO090020000666" "AO090023000223" [125] "AO090023000225" "AO090023000229" "AO090023000410" "AO090023000504" [129] "AO090023000510" "AO090023000583" "AO090023000725" "AO090023000818" [133] "AO090023000821" "AO090023000836" "AO090023000851" "AO090023000852" [137] "AO090023000885" "AO090026000406" "AO090026000485" "AO090026000521" [141] "AO090026000548" "AO090026000568" "AO090026000591" "AO090026000636" [145] "AO090026000650" "AO090026000731" "AO090038000029" "AO090038000031" [149] "AO090038000032" "AO090038000033" "AO090038000078" "AO090038000173" [153] "AO090038000177" "AO090038000306" "AO090038000341" "AO090038000367" [157] "AO090102000009" "AO090102000072" "AO090102000149" "AO090102000157" [161] "AO090102000171" "AO090102000347" "AO090102000492" "AO090102000512" [165] "AO090102000560" "AO090102000624" "AO090103000050" "AO090103000052" [169] "AO090103000177" "AO090113000137" "AO090120000004" "AO090120000101" [173] "AO090120000141" "AO090120000142" "AO090120000174" "AO090120000354" [177] "AO090120000428" "AO090120000434" "AO090124000082" "AO090138000018" [181] "AO090138000095" "AO090166000062" "AO090166000079" "AO090206000030" [185] "AO090701000072" "AO090701000089" "AO090701000118" "AO090701000169" [189] "AO090701000191" "AO090701000293" "AO090701000448" "AO090701000755" [193] "AO090701000786" -------------------------------------------------------------- Number of enriched GO terms: 36 GO terms are: [1] "ncRNA processing" [2] "ncRNA metabolic process" [3] "RNA processing" [4] "rRNA metabolic process" [5] "rRNA processing" [6] "ribosome biogenesis" [7] "nucleolus" [8] "ribonucleoprotein complex biogenesis" [9] "preribosome" [10] "nuclear lumen" [11] "small-subunit processome" [12] "tRNA processing" [13] "tRNA methylation" [14] "membrane-enclosed lumen" [15] "organelle lumen" [16] "intracellular organelle lumen" [17] "catalytic activity, acting on RNA" [18] "tRNA modification" [19] "EC:3.6.4.13" [20] "RNA helicase activity" [21] "cellular component biogenesis" [22] "ribosomal small subunit biogenesis" [23] "tRNA metabolic process" [24] "catalytic activity, acting on a nucleic acid" [25] "ATP-dependent activity, acting on RNA" [26] "maturation of SSU-rRNA" [27] "90S preribosome" [28] "RNA modification" [29] "RNA methylation" [30] "maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" [31] "helicase activity" [32] "RNA binding" [33] "ribonucleoprotein complex" [34] "macromolecule methylation" [35] "macromolecule modification" [36] "tRNA methyltransferase activity" Parent terms retrieved using org.Sc.sgd.db (S. cerevisiae) Biological process parent terms of GO terms are: term GO:0034470 "ncRNA processing" GO:0034660 "ncRNA metabolic process" GO:0006396 "RNA processing" GO:0016072 "rRNA metabolic process" GO:0006364 "rRNA processing" GO:0042254 "ribosome biogenesis" GO:0022613 "ribonucleoprotein complex biogenesis" GO:0008033 "tRNA processing" GO:0030488 "tRNA methylation" GO:0006400 "tRNA modification" GO:0044085 "cellular component biogenesis" GO:0042274 "ribosomal small subunit biogenesis" GO:0006399 "tRNA metabolic process" GO:0030490 "maturation of SSU-rRNA" GO:0009451 "RNA modification" GO:0001510 "RNA methylation" GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" GO:0043414 "macromolecule methylation" GO:0043412 "macromolecule modification" parentTerm GO:0034470 "ncRNA processing" GO:0034660 "ncRNA processing" GO:0006396 "ncRNA processing" GO:0016072 "ncRNA processing" GO:0006364 "ncRNA processing" GO:0042254 "ribosome biogenesis" GO:0022613 "ribosome biogenesis" GO:0008033 "ncRNA processing" GO:0030488 "tRNA methylation" GO:0006400 "ncRNA processing" GO:0044085 "ribosome biogenesis" GO:0042274 "ribosome biogenesis" GO:0006399 "ncRNA processing" GO:0030490 "ribosome biogenesis" GO:0009451 "tRNA methylation" GO:0001510 "tRNA methylation" GO:0000462 "ribosome biogenesis" GO:0043414 "tRNA methylation" GO:0043412 "tRNA methylation" Number of Biological process parent terms: ncRNA processing ribosome biogenesis tRNA methylation 8 6 5 Molecular function parent terms of GO terms are: term GO:0140098 "catalytic activity, acting on RNA" GO:0003724 "RNA helicase activity" GO:0008186 "ATP-dependent activity, acting on RNA" GO:0004386 "helicase activity" GO:0003723 "RNA binding" GO:0008175 "tRNA methyltransferase activity" parentTerm GO:0140098 "catalytic activity, acting on RNA" GO:0003724 "RNA helicase activity" GO:0008186 "RNA helicase activity" GO:0004386 "helicase activity" GO:0003723 "RNA binding" GO:0008175 "catalytic activity, acting on RNA" Number of Molecular function parent terms: catalytic activity, acting on RNA helicase activity 2 1 RNA binding RNA helicase activity 1 2 Cellular component parent terms of GO terms are: term parentTerm GO:0005730 "nucleolus" "nucleolus" GO:0030684 "preribosome" "preribosome" GO:0031981 "nuclear lumen" "nucleolus" GO:0032040 "small-subunit processome" "preribosome" GO:0070013 "intracellular organelle lumen" "nucleolus" GO:0043233 "organelle lumen" "nucleolus" GO:0031974 "membrane-enclosed lumen" "nucleolus" GO:0030686 "90S preribosome" "preribosome" GO:1990904 "ribonucleoprotein complex" "preribosome" Number of Cellular component parent terms: nucleolus preribosome 5 4 Number of GO terms for which NO parent term was found: 2 No parent term was found for the following GO terms: [1] "EC:3.6.4.13" [2] "catalytic activity, acting on a nucleic acid" -------------------------------------------------------------- Number of enriched KEGG pathways: 1 KEGG pathways are: [1] "Ribosome biogenesis in eukaryotes - Aspergillus oryzae" ######################################################################################################################## Cluster number 15 Number of genes in cluster 15 is: 225 Genes in cluster 15 are: [1] "AO090001000068" "AO090001000232" "AO090001000233" "AO090001000266" [5] "AO090001000275" "AO090001000301" "AO090001000427" "AO090001000430" [9] "AO090001000443" "AO090001000448" "AO090001000458" "AO090001000471" [13] "AO090001000504" "AO090001000570" "AO090001000615" "AO090001000659" [17] "AO090001000667" "AO090001000680" "AO090001000749" "AO090003000014" [21] "AO090003000106" "AO090003000293" "AO090003000312" "AO090003000376" [25] "AO090003000411" "AO090003000478" "AO090003000485" "AO090003000486" [29] "AO090003000505" "AO090003000521" "AO090003000571" "AO090003000627" [33] "AO090003000665" "AO090003000676" "AO090003000777" "AO090003000828" [37] "AO090003000849" "AO090003000855" "AO090003000867" "AO090003000912" [41] "AO090003000924" "AO090003000997" "AO090003001086" "AO090003001155" [45] "AO090003001180" "AO090003001314" "AO090003001348" "AO090003001424" [49] "AO090005000050" "AO090005000107" "AO090005000129" "AO090005000260" [53] "AO090005000305" "AO090005000352" "AO090005000429" "AO090005000432" [57] "AO090005000445" "AO090005000824" "AO090005000831" "AO090005000833" [61] "AO090005000858" "AO090005000863" "AO090005000878" "AO090005000896" [65] "AO090005000966" "AO090005000967" "AO090005001008" "AO090005001018" [69] "AO090005001052" "AO090005001072" "AO090005001116" "AO090005001158" [73] "AO090005001224" "AO090005001231" "AO090005001234" "AO090005001290" [77] "AO090005001304" "AO090005001420" "AO090005001435" "AO090005001460" [81] "AO090005001476" "AO090005001478" "AO090005001516" "AO090005001550" [85] "AO090005001579" "AO090005001607" "AO090009000138" "AO090009000187" [89] "AO090009000229" "AO090009000242" "AO090009000295" "AO090009000301" [93] "AO090009000333" "AO090009000372" "AO090009000506" "AO090009000640" [97] "AO090009000673" "AO090009000702" "AO090010000023" "AO090010000051" [101] "AO090010000052" "AO090010000344" "AO090011000145" "AO090011000292" [105] "AO090011000413" "AO090011000418" "AO090011000424" "AO090011000513" [109] "AO090011000599" "AO090011000600" "AO090011000630" "AO090011000635" [113] "AO090011000791" "AO090011000855" "AO090011000872" "AO090012000197" [117] "AO090012000450" "AO090012000486" "AO090012000488" "AO090012000541" [121] "AO090012000603" "AO090012000668" "AO090012000678" "AO090012000790" [125] "AO090012000796" "AO090012000806" "AO090012000934" "AO090012000940" [129] "AO090020000055" "AO090020000118" "AO090020000128" "AO090020000395" [133] "AO090020000428" "AO090020000523" "AO090020000583" "AO090020000604" [137] "AO090020000639" "AO090020000650" "AO090020000696" "AO090023000034" [141] "AO090023000069" "AO090023000077" "AO090023000208" "AO090023000315" [145] "AO090023000395" "AO090023000429" "AO090023000468" "AO090023000574" [149] "AO090023000641" "AO090023000727" "AO090023000752" "AO090023000788" [153] "AO090023000812" "AO090023000825" "AO090023000850" "AO090023000856" [157] "AO090023000955" "AO090023000965" "AO090023001001" "AO090026000228" [161] "AO090026000256" "AO090026000270" "AO090026000325" "AO090026000345" [165] "AO090026000348" "AO090026000434" "AO090026000469" "AO090026000495" [169] "AO090026000510" "AO090026000567" "AO090026000606" "AO090026000643" [173] "AO090026000664" "AO090026000676" "AO090026000744" "AO090038000291" [177] "AO090038000305" "AO090038000368" "AO090038000383" "AO090038000449" [181] "AO090038000524" "AO090038000563" "AO090038000565" "AO090038000585" [185] "AO090038000606" "AO090102000099" "AO090102000114" "AO090102000115" [189] "AO090102000233" "AO090102000234" "AO090102000318" "AO090102000377" [193] "AO090102000485" "AO090102000594" "AO090102000595" "AO090102000604" [197] "AO090103000032" "AO090103000037" "AO090103000065" "AO090103000410" [201] "AO090120000046" "AO090120000079" "AO090120000194" "AO090120000212" [205] "AO090120000285" "AO090120000326" "AO090120000346" "AO090120000348" [209] "AO090120000421" "AO090120000437" "AO090120000495" "AO090124000015" [213] "AO090166000077" "AO090206000037" "AO090311000002" "AO090701000059" [217] "AO090701000084" "AO090701000087" "AO090701000108" "AO090701000122" [221] "AO090701000145" "AO090701000173" "AO090701000189" "AO090701000421" [225] "AO090701000728" -------------------------------------------------------------- Number of enriched GO terms: 133 GO terms are: [1] "ncRNA metabolic process" [2] "nucleolus" [3] "ncRNA processing" [4] "rRNA metabolic process" [5] "ribosome biogenesis" [6] "rRNA processing" [7] "ribonucleoprotein complex biogenesis" [8] "RNA processing" [9] "nuclear lumen" [10] "membrane-enclosed lumen" [11] "organelle lumen" [12] "intracellular organelle lumen" [13] "preribosome" [14] "cellular component biogenesis" [15] "ribosomal large subunit biogenesis" [16] "ribonucleoprotein complex" [17] "maturation of 5.8S rRNA" [18] "maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" [19] "preribosome, large subunit precursor" [20] "RNA binding" [21] "catalytic activity, acting on RNA" [22] "small-subunit processome" [23] "maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" [24] "maturation of LSU-rRNA" [25] "catalytic activity, acting on a nucleic acid" [26] "ribosomal small subunit biogenesis" [27] "tRNA metabolic process" [28] "endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" [29] "maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" [30] "maturation of SSU-rRNA" [31] "RNA modification" [32] "rRNA 5'-end processing" [33] "endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" [34] "snoRNA binding" [35] "RNA 5'-end processing" [36] "ncRNA 5'-end processing" [37] "endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" [38] "ribosome assembly" [39] "ribosomal large subunit assembly" [40] "protein-RNA complex organization" [41] "endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" [42] "macromolecule methylation" [43] "tRNA processing" [44] "RNA methyltransferase activity" [45] "RNA methylation" [46] "catalytic activity, acting on a tRNA" [47] "protein-RNA complex assembly" [48] "rRNA modification" [49] "preribosome, small subunit precursor" [50] "90S preribosome" [51] "tRNA modification" [52] "non-membrane-bounded organelle assembly" [53] "EC:2.7.7.6" [54] "DNA-directed 5'-3' RNA polymerase activity" [55] "organelle assembly" [56] "5'-3' RNA polymerase activity" [57] "RNA polymerase activity" [58] "nuclear export" [59] "methylation" [60] "ribosomal subunit export from nucleus" [61] "ribosome localization" [62] "rRNA methylation" [63] "nuclear protein-containing complex" [64] "nucleocytoplasmic transport" [65] "nuclear transport" [66] "protein-containing complex localization" [67] "DNA-directed RNA polymerase complex" [68] "transferase activity, transferring one-carbon groups" [69] "RNA polymerase complex" [70] "pseudouridine synthesis" [71] "RNA polymerase III complex" [72] "tRNA methyltransferase activity" [73] "methyltransferase activity" [74] "S-adenosylmethionine-dependent methyltransferase activity" [75] "EC:3.6.4.13" [76] "RNA helicase activity" [77] "protein-containing complex assembly" [78] "nucleotide biosynthetic process" [79] "ubiquinone metabolic process" [80] "ubiquinone biosynthetic process" [81] "quinone metabolic process" [82] "quinone biosynthetic process" [83] "nucleoside phosphate biosynthetic process" [84] "ATP-dependent activity, acting on RNA" [85] "rRNA binding" [86] "mRNA metabolic process" [87] "protein-containing complex organization" [88] "transferase complex, transferring phosphorus-containing groups" [89] "ribose phosphate biosynthetic process" [90] "sno(s)RNA-containing ribonucleoprotein complex" [91] "ribonucleoside monophosphate biosynthetic process" [92] "cellular component assembly" [93] "mitochondrial gene expression" [94] "ligase activity" [95] "tRNA aminoacylation for protein translation" [96] "aminoacyl-tRNA ligase activity" [97] "ligase activity, forming carbon-oxygen bonds" [98] "amino acid activation" [99] "tRNA aminoacylation" [100] "regulation of translational fidelity" [101] "tRNA methylation" [102] "nucleoside monophosphate biosynthetic process" [103] "nucleotidyltransferase activity" [104] "ribonucleoside monophosphate metabolic process" [105] "unfolded protein binding" [106] "DNA-templated transcription termination" [107] "purine nucleoside monophosphate biosynthetic process" [108] "purine ribonucleoside monophosphate biosynthetic process" [109] "amino acid metabolic process" [110] "mitochondrion" [111] "establishment of organelle localization" [112] "macromolecule modification" [113] "ribonucleotide biosynthetic process" [114] "purine nucleoside monophosphate metabolic process" [115] "purine ribonucleoside monophosphate metabolic process" [116] "nucleoside monophosphate metabolic process" [117] "exosome (RNase complex)" [118] "IMP biosynthetic process" [119] "arginine metabolic process" [120] "IMP metabolic process" [121] "catalytic activity, acting on a rRNA" [122] "pyrimidine-containing compound biosynthetic process" [123] "mitochondrial RNA metabolic process" [124] "'de novo' protein folding" [125] "GO:0030529" [126] "exoribonuclease complex" [127] "transcription by RNA polymerase III" [128] "pyrimidine-containing compound metabolic process" [129] "amino acid biosynthetic process" [130] "transcription initiation at RNA polymerase III promoter" [131] "organelle localization" [132] "alpha-amino acid biosynthetic process" [133] "glutamine family amino acid biosynthetic process" Parent terms retrieved using org.Sc.sgd.db (S. cerevisiae) Biological process parent terms of GO terms are: term GO:0034660 "ncRNA metabolic process" GO:0034470 "ncRNA processing" GO:0016072 "rRNA metabolic process" GO:0042254 "ribosome biogenesis" GO:0006364 "rRNA processing" GO:0022613 "ribonucleoprotein complex biogenesis" GO:0006396 "RNA processing" GO:0044085 "cellular component biogenesis" GO:0042273 "ribosomal large subunit biogenesis" GO:0000466 "maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" GO:0000460 "maturation of 5.8S rRNA" GO:0000463 "maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" GO:0000470 "maturation of LSU-rRNA" GO:0042274 "ribosomal small subunit biogenesis" GO:0006399 "tRNA metabolic process" GO:0000479 "endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" GO:0030490 "maturation of SSU-rRNA" GO:0009451 "RNA modification" GO:0000967 "rRNA 5'-end processing" GO:0000472 "endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" GO:0000966 "RNA 5'-end processing" GO:0034471 "ncRNA 5'-end processing" GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" GO:0042255 "ribosome assembly" GO:0000027 "ribosomal large subunit assembly" GO:0071826 "protein-RNA complex organization" GO:0000480 "endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" GO:0043414 "macromolecule methylation" GO:0008033 "tRNA processing" GO:0001510 "RNA methylation" GO:0022618 "protein-RNA complex assembly" GO:0000154 "rRNA modification" GO:0006400 "tRNA modification" GO:0070925 "organelle assembly" GO:0051168 "nuclear export" GO:0032259 "methylation" GO:0033750 "ribosome localization" GO:0000054 "ribosomal subunit export from nucleus" GO:0031167 "rRNA methylation" GO:0031503 "protein-containing complex localization" GO:0051169 "nuclear transport" GO:0006913 "nucleocytoplasmic transport" GO:0001522 "pseudouridine synthesis" GO:0065003 "protein-containing complex assembly" GO:0009165 "nucleotide biosynthetic process" GO:0006743 "ubiquinone metabolic process" GO:1901661 "quinone metabolic process" GO:0006744 "ubiquinone biosynthetic process" GO:1901663 "quinone biosynthetic process" GO:1901293 "nucleoside phosphate biosynthetic process" GO:0016071 "mRNA metabolic process" GO:0043933 "protein-containing complex organization" GO:0046390 "ribose phosphate biosynthetic process" GO:0009156 "ribonucleoside monophosphate biosynthetic process" GO:0022607 "cellular component assembly" GO:0140053 "mitochondrial gene expression" GO:0006418 "tRNA aminoacylation for protein translation" GO:0006450 "regulation of translational fidelity" GO:0030488 "tRNA methylation" GO:0043039 "tRNA aminoacylation" GO:0043038 "amino acid activation" GO:0009124 "nucleoside monophosphate biosynthetic process" GO:0009161 "ribonucleoside monophosphate metabolic process" GO:0006353 "DNA-templated transcription termination" GO:0009127 "purine nucleoside monophosphate biosynthetic process" GO:0009168 "purine ribonucleoside monophosphate biosynthetic process" GO:0006520 "amino acid metabolic process" GO:0051656 "establishment of organelle localization" GO:0043412 "macromolecule modification" GO:0009260 "ribonucleotide biosynthetic process" GO:0009126 "purine nucleoside monophosphate metabolic process" GO:0009167 "purine ribonucleoside monophosphate metabolic process" GO:0009123 "nucleoside monophosphate metabolic process" GO:0006525 "arginine metabolic process" GO:0046040 "IMP metabolic process" GO:0006188 "IMP biosynthetic process" GO:0072528 "pyrimidine-containing compound biosynthetic process" GO:0006458 "'de novo' protein folding" GO:0000959 "mitochondrial RNA metabolic process" GO:0006383 "transcription by RNA polymerase III" GO:0072527 "pyrimidine-containing compound metabolic process" GO:0008652 "amino acid biosynthetic process" GO:0006384 "transcription initiation at RNA polymerase III promoter" GO:0009084 "glutamine family amino acid biosynthetic process" GO:1901607 "alpha-amino acid biosynthetic process" GO:0051640 "organelle localization" parentTerm GO:0034660 "ncRNA metabolic process" GO:0034470 "ncRNA metabolic process" GO:0016072 "ncRNA metabolic process" GO:0042254 "ribosome biogenesis" GO:0006364 "ncRNA metabolic process" GO:0022613 "ribosome biogenesis" GO:0006396 "ncRNA metabolic process" GO:0044085 "ribosome biogenesis" GO:0042273 "ribosome biogenesis" GO:0000466 "ribosome biogenesis" GO:0000460 "ribosome biogenesis" GO:0000463 "ribosome biogenesis" GO:0000470 "ribosome biogenesis" GO:0042274 "ribosome biogenesis" GO:0006399 "ncRNA metabolic process" GO:0000479 "ribosome biogenesis" GO:0000462 "ribosome biogenesis" GO:0030490 "ribosome biogenesis" GO:0009451 "RNA modification" GO:0000967 "ncRNA metabolic process" GO:0000472 "ncRNA metabolic process" GO:0000966 "ncRNA metabolic process" GO:0034471 "ncRNA metabolic process" GO:0000447 "ribosome biogenesis" GO:0042255 "ribosome biogenesis" GO:0000027 "ribosome biogenesis" GO:0071826 "protein-RNA complex organization" GO:0000480 "ribosome biogenesis" GO:0043414 "macromolecule methylation" GO:0008033 "ncRNA metabolic process" GO:0001510 "macromolecule methylation" GO:0022618 "protein-RNA complex organization" GO:0000154 "RNA modification" GO:0006400 "ncRNA metabolic process" GO:0070925 "ribosome biogenesis" GO:0051168 "nuclear export" GO:0032259 "macromolecule methylation" GO:0033750 "ribosome localization" GO:0000054 "ribosome localization" GO:0031167 "RNA modification" GO:0031503 "protein-containing complex localization" GO:0051169 "nuclear export" GO:0006913 "nuclear export" GO:0001522 "RNA modification" GO:0065003 "ribosome biogenesis" GO:0009165 "nucleotide biosynthetic process" GO:0006743 "ubiquinone metabolic process" GO:1901661 "ubiquinone metabolic process" GO:0006744 "ubiquinone metabolic process" GO:1901663 "ubiquinone metabolic process" GO:1901293 "nucleotide biosynthetic process" GO:0016071 "ncRNA metabolic process" GO:0043933 "protein-RNA complex organization" GO:0046390 "nucleotide biosynthetic process" GO:0009156 "nucleotide biosynthetic process" GO:0022607 "ribosome biogenesis" GO:0140053 "mitochondrial gene expression" GO:0006418 "tRNA aminoacylation for protein translation" GO:0006450 "regulation of translational fidelity" GO:0030488 "macromolecule methylation" GO:0043039 "tRNA aminoacylation for protein translation" GO:0043038 "tRNA aminoacylation for protein translation" GO:0009124 "nucleotide biosynthetic process" GO:0009161 "nucleotide biosynthetic process" GO:0006353 "DNA-templated transcription termination" GO:0009127 "nucleotide biosynthetic process" GO:0009168 "nucleotide biosynthetic process" GO:0006520 "tRNA aminoacylation for protein translation" GO:0051656 "ribosome localization" GO:0043412 "RNA modification" GO:0009260 "nucleotide biosynthetic process" GO:0009126 "nucleotide biosynthetic process" GO:0009167 "nucleotide biosynthetic process" GO:0009123 "nucleotide biosynthetic process" GO:0006525 "tRNA aminoacylation for protein translation" GO:0046040 "nucleotide biosynthetic process" GO:0006188 "nucleotide biosynthetic process" GO:0072528 "pyrimidine-containing compound biosynthetic process" GO:0006458 "'de novo' protein folding" GO:0000959 "mitochondrial RNA metabolic process" GO:0006383 "DNA-templated transcription termination" GO:0072527 "pyrimidine-containing compound biosynthetic process" GO:0008652 "ubiquinone metabolic process" GO:0006384 "DNA-templated transcription termination" GO:0009084 "ubiquinone metabolic process" GO:1901607 "tRNA aminoacylation for protein translation" GO:0051640 "ribosome localization" Number of Biological process parent terms: 'de novo' protein folding 1 DNA-templated transcription termination 3 macromolecule methylation 4 mitochondrial gene expression 1 mitochondrial RNA metabolic process 1 ncRNA metabolic process 13 nuclear export 3 nucleotide biosynthetic process 14 protein-containing complex localization 1 protein-RNA complex organization 3 pyrimidine-containing compound biosynthetic process 2 regulation of translational fidelity 1 ribosome biogenesis 19 ribosome localization 4 RNA modification 5 tRNA aminoacylation for protein translation 6 ubiquinone metabolic process 6 Molecular function parent terms of GO terms are: term GO:0003723 "RNA binding" GO:0140098 "catalytic activity, acting on RNA" GO:0030515 "snoRNA binding" GO:0008173 "RNA methyltransferase activity" GO:0140101 "catalytic activity, acting on a tRNA" GO:0003899 "DNA-directed 5'-3' RNA polymerase activity" GO:0097747 "RNA polymerase activity" GO:0034062 "5'-3' RNA polymerase activity" GO:0016741 "transferase activity, transferring one-carbon groups" GO:0008175 "tRNA methyltransferase activity" GO:0008168 "methyltransferase activity" GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" GO:0003724 "RNA helicase activity" GO:0008186 "ATP-dependent activity, acting on RNA" GO:0019843 "rRNA binding" GO:0016874 "ligase activity" GO:0016875 "ligase activity, forming carbon-oxygen bonds" GO:0004812 "aminoacyl-tRNA ligase activity" GO:0016779 "nucleotidyltransferase activity" GO:0051082 "unfolded protein binding" GO:0140102 "catalytic activity, acting on a rRNA" parentTerm GO:0003723 "RNA binding" GO:0140098 "catalytic activity, acting on RNA" GO:0030515 "RNA binding" GO:0008173 "RNA methyltransferase activity" GO:0140101 "catalytic activity, acting on RNA" GO:0003899 "DNA-directed 5'-3' RNA polymerase activity" GO:0097747 "DNA-directed 5'-3' RNA polymerase activity" GO:0034062 "DNA-directed 5'-3' RNA polymerase activity" GO:0016741 "RNA methyltransferase activity" GO:0008175 "RNA methyltransferase activity" GO:0008168 "RNA methyltransferase activity" GO:0008757 "RNA methyltransferase activity" GO:0003724 "RNA helicase activity" GO:0008186 "RNA helicase activity" GO:0019843 "RNA binding" GO:0016874 "ligase activity" GO:0016875 "ligase activity" GO:0004812 "ligase activity" GO:0016779 "DNA-directed 5'-3' RNA polymerase activity" GO:0051082 "unfolded protein binding" GO:0140102 "catalytic activity, acting on RNA" Number of Molecular function parent terms: catalytic activity, acting on RNA 3 DNA-directed 5'-3' RNA polymerase activity 4 ligase activity 3 RNA binding 3 RNA helicase activity 2 RNA methyltransferase activity 5 unfolded protein binding 1 Cellular component parent terms of GO terms are: term GO:0005730 "nucleolus" GO:0031981 "nuclear lumen" GO:0070013 "intracellular organelle lumen" GO:0043233 "organelle lumen" GO:0031974 "membrane-enclosed lumen" GO:0030684 "preribosome" GO:1990904 "ribonucleoprotein complex" GO:0030687 "preribosome, large subunit precursor" GO:0032040 "small-subunit processome" GO:0030688 "preribosome, small subunit precursor" GO:0030686 "90S preribosome" GO:0140513 "nuclear protein-containing complex" GO:0000428 "DNA-directed RNA polymerase complex" GO:0030880 "RNA polymerase complex" GO:0005666 "RNA polymerase III complex" GO:0061695 "transferase complex, transferring phosphorus-containing groups" GO:0005732 "sno(s)RNA-containing ribonucleoprotein complex" GO:0005739 "mitochondrion" GO:0000178 "exosome (RNase complex)" GO:1905354 "exoribonuclease complex" parentTerm GO:0005730 "nucleolus" GO:0031981 "nucleolus" GO:0070013 "nucleolus" GO:0043233 "nucleolus" GO:0031974 "nucleolus" GO:0030684 "preribosome" GO:1990904 "preribosome" GO:0030687 "preribosome" GO:0032040 "preribosome" GO:0030688 "preribosome" GO:0030686 "preribosome" GO:0140513 "nuclear protein-containing complex" GO:0000428 "DNA-directed RNA polymerase complex" GO:0030880 "DNA-directed RNA polymerase complex" GO:0005666 "DNA-directed RNA polymerase complex" GO:0061695 "DNA-directed RNA polymerase complex" GO:0005732 "preribosome" GO:0005739 "mitochondrion" GO:0000178 "DNA-directed RNA polymerase complex" GO:1905354 "DNA-directed RNA polymerase complex" Number of Cellular component parent terms: DNA-directed RNA polymerase complex mitochondrion 6 1 nuclear protein-containing complex nucleolus 1 5 preribosome 7 Number of GO terms for which NO parent term was found: 5 No parent term was found for the following GO terms: [1] "catalytic activity, acting on a nucleic acid" [2] "non-membrane-bounded organelle assembly" [3] "EC:2.7.7.6" [4] "EC:3.6.4.13" [5] "GO:0030529" -------------------------------------------------------------- Number of enriched KEGG pathways: 2 KEGG pathways are: [1] "Ribosome biogenesis in eukaryotes - Aspergillus oryzae" [2] "RNA polymerase - Aspergillus oryzae" ######################################################################################################################## Cluster number 16 Number of genes in cluster 16 is: 190 Genes in cluster 16 are: [1] "AO090001000031" "AO090001000118" "AO090001000130" "AO090001000131" [5] "AO090001000151" "AO090001000163" "AO090001000188" "AO090001000221" [9] "AO090001000421" "AO090001000671" "AO090003000152" "AO090003000509" [13] "AO090003000577" "AO090003000581" "AO090003000778" "AO090003000787" [17] "AO090003000790" "AO090003001032" "AO090003001437" "AO090003001438" [21] "AO090005000008" "AO090005000035" "AO090005000036" "AO090005000037" [25] "AO090005000103" "AO090005000186" "AO090005000231" "AO090005000277" [29] "AO090005000354" "AO090005000397" "AO090005000420" "AO090005000546" [33] "AO090005000571" "AO090005000685" "AO090005000686" "AO090005000816" [37] "AO090005000835" "AO090005000902" "AO090005000932" "AO090005001000" [41] "AO090005001154" "AO090005001219" "AO090005001332" "AO090005001473" [45] "AO090005001491" "AO090005001593" "AO090009000046" "AO090009000060" [49] "AO090009000346" "AO090009000507" "AO090009000530" "AO090009000565" [53] "AO090009000593" "AO090010000005" "AO090010000026" "AO090010000057" [57] "AO090010000154" "AO090010000222" "AO090010000230" "AO090010000251" [61] "AO090010000342" "AO090010000380" "AO090010000381" "AO090010000382" [65] "AO090010000390" "AO090010000504" "AO090010000528" "AO090010000702" [69] "AO090010000741" "AO090011000212" "AO090011000232" "AO090011000306" [73] "AO090011000337" "AO090011000364" "AO090011000383" "AO090011000473" [77] "AO090011000561" "AO090011000614" "AO090011000781" "AO090011000788" [81] "AO090011000802" "AO090012000016" "AO090012000017" "AO090012000080" [85] "AO090012000111" "AO090012000141" "AO090012000170" "AO090012000198" [89] "AO090012000226" "AO090012000311" "AO090012000312" "AO090012000313" [93] "AO090012000314" "AO090012000317" "AO090012000437" "AO090012000531" [97] "AO090012000608" "AO090012000639" "AO090012000661" "AO090012000662" [101] "AO090012000701" "AO090012000891" "AO090020000177" "AO090020000235" [105] "AO090020000236" "AO090020000384" "AO090020000385" "AO090020000387" [109] "AO090020000654" "AO090020000694" "AO090023000045" "AO090023000050" [113] "AO090023000059" "AO090023000060" "AO090023000092" "AO090023000302" [117] "AO090023000386" "AO090023000406" "AO090023000409" "AO090023000529" [121] "AO090023000530" "AO090023000609" "AO090023000658" "AO090023000659" [125] "AO090023000718" "AO090023000739" "AO090026000103" "AO090026000124" [129] "AO090026000125" "AO090026000367" "AO090026000512" "AO090026000513" [133] "AO090026000812" "AO090026000818" "AO090038000053" "AO090038000244" [137] "AO090038000262" "AO090038000419" "AO090038000420" "AO090038000434" [141] "AO090038000497" "AO090038000498" "AO090038000505" "AO090102000040" [145] "AO090102000044" "AO090102000062" "AO090102000064" "AO090102000190" [149] "AO090102000362" "AO090103000109" "AO090103000118" "AO090103000167" [153] "AO090103000169" "AO090103000211" "AO090103000230" "AO090103000352" [157] "AO090113000049" "AO090120000037" "AO090120000042" "AO090120000239" [161] "AO090120000341" "AO090120000455" "AO090120000456" "AO090120000457" [165] "AO090120000474" "AO090124000039" "AO090124000040" "AO090124000044" [169] "AO090124000045" "AO090138000062" "AO090138000115" "AO090166000074" [173] "AO090166000103" "AO090308000016" "AO090701000194" "AO090701000284" [177] "AO090701000373" "AO090701000487" "AO090701000508" "AO090701000536" [181] "AO090701000578" "AO090701000579" "AO090701000681" "AO090701000770" [185] "AO090701000824" "AO090701000837" "AO090701000879" "AO090701000890" [189] "AO090701000891" "AO090701000898" -------------------------------------------------------------- No enriched GO terms. -------------------------------------------------------------- Number of enriched KEGG pathways: 2 KEGG pathways are: [1] "Arginine and proline metabolism - Aspergillus oryzae" [2] "Tyrosine metabolism - Aspergillus oryzae" ######################################################################################################################## Cluster number 17 Number of genes in cluster 17 is: 256 Genes in cluster 17 are: [1] "AO090001000084" "AO090001000184" "AO090001000209" "AO090001000213" [5] "AO090001000219" "AO090001000241" "AO090001000259" "AO090001000423" [9] "AO090003000089" "AO090003000136" "AO090003000216" "AO090003000246" [13] "AO090003000377" "AO090003000384" "AO090003000495" "AO090003000496" [17] "AO090003000656" "AO090003000874" "AO090003000931" "AO090003000972" [21] "AO090003001119" "AO090003001364" "AO090003001365" "AO090003001377" [25] "AO090003001392" "AO090003001435" "AO090003001548" "AO090005000038" [29] "AO090005000039" "AO090005000078" "AO090005000094" "AO090005000123" [33] "AO090005000130" "AO090005000131" "AO090005000349" "AO090005000392" [37] "AO090005000440" "AO090005000498" "AO090005000532" "AO090005000534" [41] "AO090005000681" "AO090005000692" "AO090005000797" "AO090005000860" [45] "AO090005000916" "AO090005000930" "AO090005000931" "AO090005000945" [49] "AO090005001023" "AO090005001159" "AO090005001160" "AO090005001183" [53] "AO090005001334" "AO090005001348" "AO090005001554" "AO090009000001" [57] "AO090009000026" "AO090009000066" "AO090009000090" "AO090009000092" [61] "AO090009000104" "AO090009000189" "AO090009000211" "AO090009000332" [65] "AO090009000431" "AO090009000529" "AO090009000547" "AO090009000581" [69] "AO090009000612" "AO090010000089" "AO090010000090" "AO090010000138" [73] "AO090010000231" "AO090010000340" "AO090010000393" "AO090010000397" [77] "AO090010000398" "AO090010000402" "AO090010000427" "AO090010000429" [81] "AO090010000483" "AO090010000527" "AO090010000534" "AO090010000537" [85] "AO090010000598" "AO090010000616" "AO090010000669" "AO090010000670" [89] "AO090010000739" "AO090010000740" "AO090011000069" "AO090011000118" [93] "AO090011000151" "AO090011000197" "AO090011000207" "AO090011000235" [97] "AO090011000238" "AO090011000295" "AO090011000302" "AO090011000368" [101] "AO090011000374" "AO090011000425" "AO090011000430" "AO090011000459" [105] "AO090011000472" "AO090011000581" "AO090011000854" "AO090012000022" [109] "AO090012000056" "AO090012000119" "AO090012000122" "AO090012000130" [113] "AO090012000230" "AO090012000235" "AO090012000337" "AO090012000458" [117] "AO090012000719" "AO090012000829" "AO090012000845" "AO090012000921" [121] "AO090012000925" "AO090020000176" "AO090020000179" "AO090020000204" [125] "AO090020000288" "AO090020000315" "AO090020000386" "AO090020000435" [129] "AO090020000511" "AO090020000512" "AO090020000565" "AO090020000593" [133] "AO090020000624" "AO090020000655" "AO090020000682" "AO090020000695" [137] "AO090023000083" "AO090023000113" "AO090023000264" "AO090023000300" [141] "AO090023000356" "AO090023000380" "AO090023000392" "AO090023000401" [145] "AO090023000457" "AO090023000503" "AO090023000542" "AO090023000559" [149] "AO090023000608" "AO090023000643" "AO090023000645" "AO090023000671" [153] "AO090023000691" "AO090023000754" "AO090023000862" "AO090023000990" [157] "AO090026000083" "AO090026000147" "AO090026000194" "AO090026000224" [161] "AO090026000281" "AO090026000292" "AO090026000735" "AO090026000736" [165] "AO090026000740" "AO090026000741" "AO090026000749" "AO090026000756" [169] "AO090026000761" "AO090026000781" "AO090026000782" "AO090026000831" [173] "AO090038000026" "AO090038000050" "AO090038000052" "AO090038000085" [177] "AO090038000106" "AO090038000135" "AO090038000140" "AO090038000159" [181] "AO090038000171" "AO090038000172" "AO090038000241" "AO090038000330" [185] "AO090038000355" "AO090038000418" "AO090038000485" "AO090038000486" [189] "AO090038000499" "AO090038000500" "AO090038000537" "AO090038000626" [193] "AO090102000110" "AO090102000130" "AO090102000229" "AO090102000246" [197] "AO090102000382" "AO090102000413" "AO090102000540" "AO090102000588" [201] "AO090103000084" "AO090103000085" "AO090103000093" "AO090103000107" [205] "AO090103000111" "AO090103000290" "AO090103000370" "AO090103000420" [209] "AO090103000443" "AO090113000008" "AO090113000064" "AO090113000106" [213] "AO090113000169" "AO090120000007" "AO090120000018" "AO090120000045" [217] "AO090120000084" "AO090120000214" "AO090120000221" "AO090120000370" [221] "AO090120000371" "AO090124000029" "AO090138000036" "AO090138000041" [225] "AO090138000057" "AO090138000071" "AO090138000072" "AO090138000079" [229] "AO090138000121" "AO090206000080" "AO090206000105" "AO090701000071" [233] "AO090701000114" "AO090701000205" "AO090701000218" "AO090701000220" [237] "AO090701000307" "AO090701000311" "AO090701000346" "AO090701000360" [241] "AO090701000361" "AO090701000362" "AO090701000398" "AO090701000399" [245] "AO090701000408" "AO090701000423" "AO090701000598" "AO090701000600" [249] "AO090701000601" "AO090701000656" "AO090701000768" "AO090701000769" [253] "AO090701000893" "AO090701000894" "AO090701000896" "AO090701000899" -------------------------------------------------------------- Number of enriched GO terms: 1 GO terms are: [1] "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" Parent terms retrieved using org.Sc.sgd.db (S. cerevisiae) No Biological process parent terms found. No Molecular function parent terms found. No Cellular component parent terms found. Number of GO terms for which NO parent term was found: 1 No parent term was found for the following GO terms: [1] "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" -------------------------------------------------------------- Number of enriched KEGG pathways: 2 KEGG pathways are: [1] "Phenylalanine metabolism - Aspergillus oryzae" [2] "Arginine and proline metabolism - Aspergillus oryzae" ######################################################################################################################## Cluster number 18 Number of genes in cluster 18 is: 596 Genes in cluster 18 are: [1] "AO090001000020" "AO090001000063" "AO090001000073" "AO090001000087" [5] "AO090001000097" "AO090001000134" "AO090001000175" "AO090001000234" [9] "AO090001000251" "AO090001000269" "AO090001000285" "AO090001000288" [13] "AO090001000290" "AO090001000292" "AO090001000319" "AO090001000340" [17] "AO090001000381" "AO090001000388" "AO090001000394" "AO090001000447" [21] "AO090001000509" "AO090001000532" "AO090001000535" "AO090001000536" [25] "AO090001000540" "AO090001000541" "AO090001000589" "AO090001000606" [29] "AO090001000608" "AO090001000744" "AO090003000019" "AO090003000050" [33] "AO090003000077" "AO090003000098" "AO090003000130" "AO090003000131" [37] "AO090003000175" "AO090003000212" "AO090003000239" "AO090003000254" [41] "AO090003000256" "AO090003000261" "AO090003000274" "AO090003000275" [45] "AO090003000276" "AO090003000277" "AO090003000327" "AO090003000341" [49] "AO090003000349" "AO090003000352" "AO090003000420" "AO090003000446" [53] "AO090003000579" "AO090003000580" "AO090003000612" "AO090003000614" [57] "AO090003000637" "AO090003000699" "AO090003000704" "AO090003000705" [61] "AO090003000706" "AO090003000709" "AO090003000713" "AO090003000782" [65] "AO090003000823" "AO090003000825" "AO090003000830" "AO090003000833" [69] "AO090003000859" "AO090003000864" "AO090003000890" "AO090003000897" [73] "AO090003000908" "AO090003000945" "AO090003000962" "AO090003001015" [77] "AO090003001058" "AO090003001080" "AO090003001081" "AO090003001100" [81] "AO090003001143" "AO090003001241" "AO090003001247" "AO090003001248" [85] "AO090003001268" "AO090003001293" "AO090003001302" "AO090003001308" [89] "AO090003001342" "AO090003001361" "AO090003001362" "AO090003001387" [93] "AO090003001410" "AO090003001417" "AO090003001418" "AO090003001431" [97] "AO090003001442" "AO090003001443" "AO090003001461" "AO090003001505" [101] "AO090003001507" "AO090003001508" "AO090003001509" "AO090003001511" [105] "AO090003001527" "AO090003001544" "AO090003001545" "AO090003001547" [109] "AO090003001556" "AO090005000013" "AO090005000042" "AO090005000079" [113] "AO090005000080" "AO090005000081" "AO090005000082" "AO090005000109" [117] "AO090005000167" "AO090005000194" "AO090005000195" "AO090005000237" [121] "AO090005000240" "AO090005000248" "AO090005000251" "AO090005000253" [125] "AO090005000254" "AO090005000272" "AO090005000281" "AO090005000297" [129] "AO090005000320" "AO090005000321" "AO090005000323" "AO090005000324" [133] "AO090005000326" "AO090005000332" "AO090005000342" "AO090005000382" [137] "AO090005000403" "AO090005000423" "AO090005000530" "AO090005000613" [141] "AO090005000661" "AO090005000672" "AO090005000698" "AO090005000740" [145] "AO090005000743" "AO090005000747" "AO090005000767" "AO090005000768" [149] "AO090005000769" "AO090005000799" "AO090005000815" "AO090005000962" [153] "AO090005000971" "AO090005000972" "AO090005000988" "AO090005001005" [157] "AO090005001028" "AO090005001050" "AO090005001079" "AO090005001083" [161] "AO090005001119" "AO090005001189" "AO090005001243" "AO090005001288" [165] "AO090005001328" "AO090005001581" "AO090005001626" "AO090005001647" [169] "AO090009000019" "AO090009000020" "AO090009000021" "AO090009000034" [173] "AO090009000049" "AO090009000086" "AO090009000116" "AO090009000216" [177] "AO090009000239" "AO090009000246" "AO090009000322" "AO090009000366" [181] "AO090009000386" "AO090009000411" "AO090009000510" "AO090009000535" [185] "AO090009000536" "AO090009000566" "AO090009000575" "AO090009000591" [189] "AO090009000592" "AO090009000670" "AO090009t00001" "AO090010000016" [193] "AO090010000020" "AO090010000021" "AO090010000039" "AO090010000053" [197] "AO090010000067" "AO090010000092" "AO090010000110" "AO090010000172" [201] "AO090010000173" "AO090010000217" "AO090010000289" "AO090010000299" [205] "AO090010000322" "AO090010000328" "AO090010000338" "AO090010000355" [209] "AO090010000377" "AO090010000403" "AO090010000404" "AO090010000417" [213] "AO090010000514" "AO090010000520" "AO090010000524" "AO090010000525" [217] "AO090010000529" "AO090010000531" "AO090010000536" "AO090010000551" [221] "AO090010000561" "AO090010000594" "AO090010000620" "AO090010000648" [225] "AO090010000650" "AO090010000651" "AO090010000658" "AO090010000679" [229] "AO090010000704" "AO090010000736" "AO090010000745" "AO090010000746" [233] "AO090010000751" "AO090011000015" "AO090011000034" "AO090011000036" [237] "AO090011000052" "AO090011000119" "AO090011000195" "AO090011000248" [241] "AO090011000257" "AO090011000261" "AO090011000286" "AO090011000313" [245] "AO090011000314" "AO090011000315" "AO090011000352" "AO090011000398" [249] "AO090011000401" "AO090011000423" "AO090011000432" "AO090011000433" [253] "AO090011000434" "AO090011000464" "AO090011000524" "AO090011000525" [257] "AO090011000538" "AO090011000564" "AO090011000663" "AO090011000718" [261] "AO090011000745" "AO090011000748" "AO090011000749" "AO090011000816" [265] "AO090011000818" "AO090011000864" "AO090011000909" "AO090011000947" [269] "AO090012000001" "AO090012000002" "AO090012000029" "AO090012000033" [273] "AO090012000034" "AO090012000035" "AO090012000036" "AO090012000045" [277] "AO090012000061" "AO090012000062" "AO090012000065" "AO090012000067" [281] "AO090012000097" "AO090012000112" "AO090012000123" "AO090012000135" [285] "AO090012000136" "AO090012000143" "AO090012000146" "AO090012000166" [289] "AO090012000222" "AO090012000283" "AO090012000298" "AO090012000323" [293] "AO090012000324" "AO090012000326" "AO090012000327" "AO090012000328" [297] "AO090012000358" "AO090012000359" "AO090012000360" "AO090012000361" [301] "AO090012000362" "AO090012000376" "AO090012000388" "AO090012000390" [305] "AO090012000465" "AO090012000561" "AO090012000572" "AO090012000573" [309] "AO090012000614" "AO090012000663" "AO090012000681" "AO090012000735" [313] "AO090012000742" "AO090012000751" "AO090012000774" "AO090012000792" [317] "AO090012000793" "AO090012000839" "AO090012000852" "AO090012000862" [321] "AO090012000863" "AO090012000876" "AO090012000944" "AO090012000946" [325] "AO090020000029" "AO090020000086" "AO090020000095" "AO090020000142" [329] "AO090020000182" "AO090020000189" "AO090020000222" "AO090020000257" [333] "AO090020000267" "AO090020000289" "AO090020000301" "AO090020000366" [337] "AO090020000367" "AO090020000437" "AO090020000483" "AO090020000573" [341] "AO090020000588" "AO090020000610" "AO090020000611" "AO090020000674" [345] "AO090020000704" "AO090023000003" "AO090023000004" "AO090023000023" [349] "AO090023000024" "AO090023000026" "AO090023000037" "AO090023000053" [353] "AO090023000075" "AO090023000143" "AO090023000165" "AO090023000280" [357] "AO090023000291" "AO090023000299" "AO090023000344" "AO090023000350" [361] "AO090023000357" "AO090023000358" "AO090023000359" "AO090023000360" [365] "AO090023000361" "AO090023000362" "AO090023000363" "AO090023000364" [369] "AO090023000371" "AO090023000385" "AO090023000397" "AO090023000399" [373] "AO090023000400" "AO090023000425" "AO090023000448" "AO090023000453" [377] "AO090023000490" "AO090023000523" "AO090023000612" "AO090023000615" [381] "AO090023000621" "AO090023000635" "AO090023000674" "AO090023000717" [385] "AO090023000721" "AO090023000748" "AO090023000790" "AO090023000799" [389] "AO090023000804" "AO090023000919" "AO090023000946" "AO090023000959" [393] "AO090026000048" "AO090026000049" "AO090026000050" "AO090026000051" [397] "AO090026000052" "AO090026000053" "AO090026000087" "AO090026000088" [401] "AO090026000123" "AO090026000131" "AO090026000149" "AO090026000174" [405] "AO090026000180" "AO090026000243" "AO090026000253" "AO090026000304" [409] "AO090026000305" "AO090026000306" "AO090026000408" "AO090026000484" [413] "AO090026000627" "AO090026000641" "AO090026000669" "AO090026000702" [417] "AO090026000757" "AO090026000762" "AO090026000763" "AO090026000765" [421] "AO090026000767" "AO090026000770" "AO090026000771" "AO090026000773" [425] "AO090026000775" "AO090026000790" "AO090026000804" "AO090026000826" [429] "AO090026000839" "AO090038000009" "AO090038000042" "AO090038000061" [433] "AO090038000062" "AO090038000113" "AO090038000122" "AO090038000139" [437] "AO090038000176" "AO090038000180" "AO090038000181" "AO090038000182" [441] "AO090038000187" "AO090038000195" "AO090038000223" "AO090038000258" [445] "AO090038000264" "AO090038000267" "AO090038000422" "AO090038000433" [449] "AO090038000481" "AO090038000495" "AO090038000507" "AO090038000518" [453] "AO090038000543" "AO090038000569" "AO090038000570" "AO090038000575" [457] "AO090102000007" "AO090102000028" "AO090102000059" "AO090102000060" [461] "AO090102000067" "AO090102000089" "AO090102000090" "AO090102000095" [465] "AO090102000165" "AO090102000281" "AO090102000284" "AO090102000285" [469] "AO090102000286" "AO090102000303" "AO090102000329" "AO090102000350" [473] "AO090102000441" "AO090102000448" "AO090102000468" "AO090102000489" [477] "AO090102000506" "AO090102000610" "AO090102000649" "AO090103000019" [481] "AO090103000025" "AO090103000057" "AO090103000094" "AO090103000095" [485] "AO090103000121" "AO090103000127" "AO090103000130" "AO090103000144" [489] "AO090103000145" "AO090103000156" "AO090103000183" "AO090103000203" [493] "AO090103000225" "AO090103000240" "AO090103000265" "AO090103000266" [497] "AO090103000267" "AO090103000284" "AO090103000312" "AO090103000374" [501] "AO090103000375" "AO090103000376" "AO090103000391" "AO090103000447" [505] "AO090103000448" "AO090103000449" "AO090103000450" "AO090103000452" [509] "AO090103000465" "AO090103000467" "AO090103000468" "AO090103000506" [513] "AO090103000507" "AO090113000021" "AO090113000022" "AO090113000033" [517] "AO090113000042" "AO090113000052" "AO090113000057" "AO090113000066" [521] "AO090113000103" "AO090113000127" "AO090113000155" "AO090113000164" [525] "AO090113000165" "AO090113000187" "AO090113000193" "AO090113000195" [529] "AO090120000064" "AO090120000076" "AO090120000102" "AO090120000106" [533] "AO090120000180" "AO090120000195" "AO090120000232" "AO090120000260" [537] "AO090120000377" "AO090120000400" "AO090120000401" "AO090120000415" [541] "AO090124000063" "AO090124000068" "AO090138000007" "AO090138000051" [545] "AO090138000055" "AO090138000068" "AO090138000088" "AO090138000107" [549] "AO090138000120" "AO090138000122" "AO090138000169" "AO090166000050" [553] "AO090166000089" "AO090701000038" "AO090701000177" "AO090701000223" [557] "AO090701000246" "AO090701000283" "AO090701000313" "AO090701000314" [561] "AO090701000315" "AO090701000317" "AO090701000326" "AO090701000340" [565] "AO090701000349" "AO090701000364" "AO090701000387" "AO090701000388" [569] "AO090701000410" "AO090701000466" "AO090701000469" "AO090701000510" [573] "AO090701000528" "AO090701000529" "AO090701000530" "AO090701000540" [577] "AO090701000549" "AO090701000563" "AO090701000603" "AO090701000605" [581] "AO090701000629" "AO090701000630" "AO090701000631" "AO090701000632" [585] "AO090701000633" "AO090701000650" "AO090701000658" "AO090701000665" [589] "AO090701000666" "AO090701000695" "AO090701000737" "AO090701000774" [593] "AO090701000855" "AO090701000861" "AO090701000900" "AO090701000902" -------------------------------------------------------------- Number of enriched GO terms: 4 GO terms are: [1] "GO:0022891" "plasma membrane" [3] "carbohydrate metabolic process" "cell periphery" Parent terms retrieved using org.Sc.sgd.db (S. cerevisiae) No Biological process parent terms found. No Molecular function parent terms found. Cellular component parent terms of GO terms are: term parentTerm GO:0005886 "plasma membrane" "plasma membrane" GO:0071944 "cell periphery" "plasma membrane" Number of Cellular component parent terms: plasma membrane 2 Number of GO terms for which NO parent term was found: 2 No parent term was found for the following GO terms: [1] "GO:0022891" "carbohydrate metabolic process" -------------------------------------------------------------- Number of enriched KEGG pathways: 2 KEGG pathways are: [1] "Biosynthesis of various plant secondary metabolites - Aspergillus oryzae" [2] "Starch and sucrose metabolism - Aspergillus oryzae" ######################################################################################################################## Cluster number 19 Number of genes in cluster 19 is: 477 Genes in cluster 19 are: [1] "AO090001000021" "AO090001000066" "AO090001000117" "AO090001000135" [5] "AO090001000158" "AO090001000179" "AO090001000200" "AO090001000237" [9] "AO090001000252" "AO090001000287" "AO090001000293" "AO090001000311" [13] "AO090001000314" "AO090001000320" "AO090001000384" "AO090001000385" [17] "AO090001000449" "AO090001000474" "AO090001000475" "AO090001000491" [21] "AO090001000506" "AO090001000515" "AO090001000518" "AO090001000528" [25] "AO090001000537" "AO090001000538" "AO090001000539" "AO090001000555" [29] "AO090001000558" "AO090001000588" "AO090001000612" "AO090001000618" [33] "AO090001000619" "AO090001000625" "AO090001000633" "AO090003000007" [37] "AO090003000023" "AO090003000044" "AO090003000111" "AO090003000217" [41] "AO090003000334" "AO090003000335" "AO090003000416" "AO090003000419" [45] "AO090003000444" "AO090003000460" "AO090003000471" "AO090003000475" [49] "AO090003000497" "AO090003000529" "AO090003000542" "AO090003000626" [53] "AO090003000638" "AO090003000738" "AO090003000772" "AO090003000773" [57] "AO090003000863" "AO090003000933" "AO090003001008" "AO090003001016" [61] "AO090003001036" "AO090003001208" "AO090003001222" "AO090003001259" [65] "AO090003001279" "AO090003001289" "AO090003001301" "AO090003001306" [69] "AO090003001333" "AO090003001363" "AO090003001388" "AO090003001399" [73] "AO090003001413" "AO090003001421" "AO090003001432" "AO090003001440" [77] "AO090003001444" "AO090003001504" "AO090003001506" "AO090005000019" [81] "AO090005000020" "AO090005000029" "AO090005000065" "AO090005000083" [85] "AO090005000090" "AO090005000121" "AO090005000125" "AO090005000127" [89] "AO090005000144" "AO090005000192" "AO090005000200" "AO090005000201" [93] "AO090005000207" "AO090005000217" "AO090005000246" "AO090005000262" [97] "AO090005000288" "AO090005000339" "AO090005000401" "AO090005000439" [101] "AO090005000446" "AO090005000447" "AO090005000500" "AO090005000536" [105] "AO090005000538" "AO090005000593" "AO090005000599" "AO090005000610" [109] "AO090005000621" "AO090005000638" "AO090005000676" "AO090005000678" [113] "AO090005000742" "AO090005000776" "AO090005000790" "AO090005000903" [117] "AO090005000905" "AO090005000909" "AO090005000917" "AO090005001041" [121] "AO090005001065" "AO090005001084" "AO090005001138" "AO090005001140" [125] "AO090005001282" "AO090005001307" "AO090005001308" "AO090005001309" [129] "AO090005001409" "AO090005001411" "AO090005001454" "AO090005001458" [133] "AO090005001526" "AO090005001564" "AO090005001602" "AO090005001651" [137] "AO090009000018" "AO090009000023" "AO090009000035" "AO090009000036" [141] "AO090009000061" "AO090009000070" "AO090009000083" "AO090009000142" [145] "AO090009000279" "AO090009000330" "AO090009000410" "AO090009000427" [149] "AO090009000433" "AO090009000443" "AO090009000479" "AO090009000527" [153] "AO090009000551" "AO090010000012" "AO090010000087" "AO090010000091" [157] "AO090010000112" "AO090010000128" "AO090010000131" "AO090010000176" [161] "AO090010000288" "AO090010000315" "AO090010000385" "AO090010000386" [165] "AO090010000406" "AO090010000486" "AO090010000556" "AO090010000593" [169] "AO090010000627" "AO090010000710" "AO090010000756" "AO090010000770" [173] "AO090011000013" "AO090011000031" "AO090011000043" "AO090011000065" [177] "AO090011000121" "AO090011000198" "AO090011000220" "AO090011000258" [181] "AO090011000265" "AO090011000526" "AO090011000558" "AO090011000610" [185] "AO090011000664" "AO090011000665" "AO090011000671" "AO090011000693" [189] "AO090011000725" "AO090011000726" "AO090011000744" "AO090011000747" [193] "AO090011000814" "AO090011000889" "AO090011000905" "AO090011000908" [197] "AO090011000914" "AO090011000942" "AO090012000004" "AO090012000012" [201] "AO090012000044" "AO090012000058" "AO090012000079" "AO090012000109" [205] "AO090012000147" "AO090012000236" "AO090012000237" "AO090012000265" [209] "AO090012000307" "AO090012000354" "AO090012000389" "AO090012000392" [213] "AO090012000423" "AO090012000435" "AO090012000440" "AO090012000449" [217] "AO090012000464" "AO090012000490" "AO090012000491" "AO090012000547" [221] "AO090012000555" "AO090012000704" "AO090012000705" "AO090012000741" [225] "AO090012000794" "AO090012000795" "AO090012000832" "AO090012000886" [229] "AO090012000905" "AO090012000936" "AO090012000941" "AO090012000945" [233] "AO090012000970" "AO090012000971" "AO090012001022" "AO090020000093" [237] "AO090020000130" "AO090020000151" "AO090020000223" "AO090020000224" [241] "AO090020000225" "AO090020000352" "AO090020000362" "AO090020000438" [245] "AO090020000439" "AO090020000526" "AO090020000528" "AO090020000547" [249] "AO090020000568" "AO090020000574" "AO090020000589" "AO090020000649" [253] "AO090020000691" "AO090023000095" "AO090023000185" "AO090023000244" [257] "AO090023000282" "AO090023000283" "AO090023000284" "AO090023000285" [261] "AO090023000287" "AO090023000288" "AO090023000348" "AO090023000349" [265] "AO090023000367" "AO090023000370" "AO090023000405" "AO090023000452" [269] "AO090023000463" "AO090023000518" "AO090023000546" "AO090023000560" [273] "AO090023000602" "AO090023000684" "AO090023000696" "AO090023000705" [277] "AO090023000720" "AO090023000722" "AO090023000746" "AO090023000749" [281] "AO090023000773" "AO090023000774" "AO090023000939" "AO090023000944" [285] "AO090023000951" "AO090026000034" "AO090026000039" "AO090026000095" [289] "AO090026000111" "AO090026000114" "AO090026000150" "AO090026000154" [293] "AO090026000187" "AO090026000207" "AO090026000208" "AO090026000252" [297] "AO090026000279" "AO090026000313" "AO090026000320" "AO090026000395" [301] "AO090026000400" "AO090026000443" "AO090026000463" "AO090026000482" [305] "AO090026000530" "AO090026000623" "AO090026000640" "AO090026000648" [309] "AO090026000668" "AO090026000680" "AO090026000774" "AO090026000798" [313] "AO090038000001" "AO090038000017" "AO090038000027" "AO090038000123" [317] "AO090038000124" "AO090038000125" "AO090038000175" "AO090038000183" [321] "AO090038000184" "AO090038000188" "AO090038000231" "AO090038000233" [325] "AO090038000234" "AO090038000240" "AO090038000250" "AO090038000251" [329] "AO090038000320" "AO090038000353" "AO090038000380" "AO090038000416" [333] "AO090038000421" "AO090038000448" "AO090038000460" "AO090038000471" [337] "AO090038000472" "AO090038000473" "AO090038000474" "AO090038000490" [341] "AO090038000494" "AO090038000508" "AO090038000509" "AO090038000540" [345] "AO090038000544" "AO090038000593" "AO090038000619" "AO090038000629" [349] "AO090102000053" "AO090102000091" "AO090102000092" "AO090102000152" [353] "AO090102000177" "AO090102000186" "AO090102000187" "AO090102000245" [357] "AO090102000296" "AO090102000315" "AO090102000321" "AO090102000359" [361] "AO090102000400" "AO090102000404" "AO090102000405" "AO090102000421" [365] "AO090102000457" "AO090102000470" "AO090102000471" "AO090102000473" [369] "AO090102000480" "AO090102000483" "AO090102000484" "AO090102000510" [373] "AO090103000036" "AO090103000046" "AO090103000061" "AO090103000131" [377] "AO090103000132" "AO090103000134" "AO090103000146" "AO090103000147" [381] "AO090103000182" "AO090103000208" "AO090103000209" "AO090103000222" [385] "AO090103000252" "AO090103000325" "AO090103000326" "AO090103000336" [389] "AO090103000359" "AO090103000398" "AO090103000464" "AO090103000469" [393] "AO090103000470" "AO090103000490" "AO090113000029" "AO090113000044" [397] "AO090113000046" "AO090113000065" "AO090113000090" "AO090113000112" [401] "AO090113000113" "AO090120000010" "AO090120000014" "AO090120000021" [405] "AO090120000036" "AO090120000050" "AO090120000052" "AO090120000062" [409] "AO090120000075" "AO090120000086" "AO090120000158" "AO090120000171" [413] "AO090120000185" "AO090120000189" "AO090120000196" "AO090120000230" [417] "AO090120000237" "AO090120000267" "AO090120000268" "AO090120000289" [421] "AO090120000468" "AO090120000492" "AO090124000013" "AO090124000067" [425] "AO090138000009" "AO090138000028" "AO090138000066" "AO090138000067" [429] "AO090138000132" "AO090138000135" "AO090138000150" "AO090138000151" [433] "AO090138000173" "AO090138000201" "AO090166000043" "AO090166000044" [437] "AO090166000065" "AO090166000099" "AO090166000116" "AO090166000118" [441] "AO090166000119" "AO090206000019" "AO090206000045" "AO090206000102" [445] "AO090206000103" "AO090308000003" "AO090701000161" "AO090701000178" [449] "AO090701000236" "AO090701000242" "AO090701000244" "AO090701000286" [453] "AO090701000304" "AO090701000316" "AO090701000347" "AO090701000363" [457] "AO090701000366" "AO090701000405" "AO090701000411" "AO090701000449" [461] "AO090701000467" "AO090701000468" "AO090701000470" "AO090701000489" [465] "AO090701000492" "AO090701000555" "AO090701000580" "AO090701000581" [469] "AO090701000594" "AO090701000626" "AO090701000696" "AO090701000780" [473] "AO090701000838" "AO090701000885" "AO090701000904" "AO090701000905" [477] "AO090701t00002" -------------------------------------------------------------- Number of enriched GO terms: 4 GO terms are: [1] "carbohydrate metabolic process" [2] "hydrolase activity, hydrolyzing O-glycosyl compounds" [3] "hydrolase activity, acting on glycosyl bonds" [4] "carbohydrate binding" Parent terms retrieved using org.Sc.sgd.db (S. cerevisiae) No Biological process parent terms found. Molecular function parent terms of GO terms are: term GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" GO:0016798 "hydrolase activity, acting on glycosyl bonds" GO:0030246 "carbohydrate binding" parentTerm GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" GO:0016798 "hydrolase activity, hydrolyzing O-glycosyl compounds" GO:0030246 "carbohydrate binding" Number of Molecular function parent terms: carbohydrate binding 1 hydrolase activity, hydrolyzing O-glycosyl compounds 2 No Cellular component parent terms found. Number of GO terms for which NO parent term was found: 1 No parent term was found for the following GO terms: [1] "carbohydrate metabolic process" -------------------------------------------------------------- Number of enriched KEGG pathways: 3 KEGG pathways are: [1] "Starch and sucrose metabolism - Aspergillus oryzae" [2] "Galactose metabolism - Aspergillus oryzae" [3] "Propanoate metabolism - Aspergillus oryzae" ######################################################################################################################## Cluster number 20 Number of genes in cluster 20 is: 293 Genes in cluster 20 are: [1] "AO090001000112" "AO090001000113" "AO090001000133" "AO090001000162" [5] "AO090001000187" "AO090001000238" "AO090001000256" "AO090001000298" [9] "AO090001000431" "AO090001000483" "AO090001000492" "AO090001000549" [13] "AO090001000557" "AO090001000622" "AO090001000624" "AO090001000670" [17] "AO090001000679" "AO090003000211" "AO090003000245" "AO090003000260" [21] "AO090003000380" "AO090003000443" "AO090003000553" "AO090003000775" [25] "AO090003000781" "AO090003000994" "AO090003001067" "AO090003001099" [29] "AO090003001113" "AO090003001138" "AO090003001287" "AO090003001288" [33] "AO090003001349" "AO090003001389" "AO090003001411" "AO090003001441" [37] "AO090003001493" "AO090003001494" "AO090003001525" "AO090003001546" [41] "AO090005000021" "AO090005000049" "AO090005000122" "AO090005000148" [45] "AO090005000202" "AO090005000221" "AO090005000241" "AO090005000289" [49] "AO090005000316" "AO090005000336" "AO090005000341" "AO090005000471" [53] "AO090005000476" "AO090005000477" "AO090005000499" "AO090005000506" [57] "AO090005000634" "AO090005000709" "AO090005000734" "AO090005000765" [61] "AO090005000779" "AO090005000818" "AO090005000890" "AO090005000915" [65] "AO090005000927" "AO090005000942" "AO090005000987" "AO090005000990" [69] "AO090005001026" "AO090005001049" "AO090005001055" "AO090005001102" [73] "AO090005001197" "AO090005001198" "AO090005001273" "AO090005001321" [77] "AO090005001384" "AO090005001401" "AO090005001410" "AO090005001415" [81] "AO090005001416" "AO090005001418" "AO090005001506" "AO090009000033" [85] "AO090009000065" "AO090009000134" "AO090009000164" "AO090009000237" [89] "AO090009000276" "AO090009000315" "AO090009000375" "AO090009000388" [93] "AO090009000392" "AO090009000572" "AO090009000580" "AO090009000596" [97] "AO090010000101" "AO090010000111" "AO090010000196" "AO090010000266" [101] "AO090010000284" "AO090010000297" "AO090010000323" "AO090010000379" [105] "AO090010000532" "AO090010000549" "AO090010000555" "AO090010000563" [109] "AO090010000570" "AO090010000585" "AO090010000586" "AO090010000621" [113] "AO090010000742" "AO090010000750" "AO090011000012" "AO090011000035" [117] "AO090011000063" "AO090011000076" "AO090011000082" "AO090011000099" [121] "AO090011000100" "AO090011000297" "AO090011000362" "AO090011000536" [125] "AO090011000537" "AO090011000575" "AO090011000613" "AO090011000620" [129] "AO090011000852" "AO090011000917" "AO090012000066" "AO090012000137" [133] "AO090012000145" "AO090012000217" "AO090012000227" "AO090012000296" [137] "AO090012000338" "AO090012000341" "AO090012000365" "AO090012000368" [141] "AO090012000525" "AO090012000602" "AO090012000606" "AO090012000607" [145] "AO090012000616" "AO090012000656" "AO090012000843" "AO090012000867" [149] "AO090012000881" "AO090020000042" "AO090020000061" "AO090020000075" [153] "AO090020000076" "AO090020000138" "AO090020000163" "AO090020000185" [157] "AO090020000216" "AO090020000229" "AO090020000232" "AO090020000233" [161] "AO090020000247" "AO090020000290" "AO090020000332" "AO090020000391" [165] "AO090020000495" "AO090020000559" "AO090020000659" "AO090020000698" [169] "AO090020000700" "AO090023000007" "AO090023000010" "AO090023000013" [173] "AO090023000052" "AO090023000129" "AO090023000131" "AO090023000132" [177] "AO090023000151" "AO090023000214" "AO090023000324" "AO090023000345" [181] "AO090023000346" "AO090023000458" "AO090023000493" "AO090023000525" [185] "AO090023000528" "AO090023000531" "AO090023000545" "AO090023000600" [189] "AO090023000613" "AO090023000614" "AO090023000697" "AO090023000784" [193] "AO090023000800" "AO090023000920" "AO090023000972" "AO090026000043" [197] "AO090026000047" "AO090026000058" "AO090026000080" "AO090026000105" [201] "AO090026000137" "AO090026000188" "AO090026000191" "AO090026000205" [205] "AO090026000210" "AO090026000245" "AO090026000278" "AO090026000280" [209] "AO090026000288" "AO090026000412" "AO090026000481" "AO090026000502" [213] "AO090026000559" "AO090026000686" "AO090026000784" "AO090026000819" [217] "AO090038000107" "AO090038000108" "AO090038000131" "AO090038000132" [221] "AO090038000193" "AO090038000261" "AO090038000520" "AO090038000545" [225] "AO090038000612" "AO090038000620" "AO090102000042" "AO090102000047" [229] "AO090102000061" "AO090102000141" "AO090102000192" "AO090102000198" [233] "AO090102000249" "AO090102000320" "AO090102000361" "AO090102000372" [237] "AO090102000467" "AO090102000514" "AO090102000639" "AO090103000092" [241] "AO090103000104" "AO090103000105" "AO090103000106" "AO090103000280" [245] "AO090103000285" "AO090103000286" "AO090103000299" "AO090103000328" [249] "AO090103000365" "AO090113000061" "AO090113000191" "AO090113000192" [253] "AO090120000044" "AO090120000055" "AO090120000162" "AO090120000170" [257] "AO090120000236" "AO090120000300" "AO090120000372" "AO090120000374" [261] "AO090120000408" "AO090120000448" "AO090120000464" "AO090124000012" [265] "AO090138000046" "AO090138000075" "AO090166000013" "AO090166000045" [269] "AO090166000060" "AO090166000067" "AO090166000117" "AO090206000092" [273] "AO090206000101" "AO090308000011" "AO090701000042" "AO090701000086" [277] "AO090701000176" "AO090701000274" "AO090701000345" "AO090701000365" [281] "AO090701000367" "AO090701000415" "AO090701000428" "AO090701000440" [285] "AO090701000461" "AO090701000483" "AO090701000490" "AO090701000509" [289] "AO090701000542" "AO090701000593" "AO090701000595" "AO090701000596" [293] "AO090701000906" -------------------------------------------------------------- No enriched GO terms. -------------------------------------------------------------- Number of enriched KEGG pathways: 3 KEGG pathways are: [1] "Tryptophan metabolism - Aspergillus oryzae" [2] "Phenylalanine metabolism - Aspergillus oryzae" [3] "Arginine and proline metabolism - Aspergillus oryzae" ######################################################################################################################## Cluster number 21 Number of genes in cluster 21 is: 261 Genes in cluster 21 are: [1] "AO090001000062" "AO090001000071" "AO090001000079" "AO090001000090" [5] "AO090001000100" "AO090001000291" "AO090001000317" "AO090001000332" [9] "AO090001000392" "AO090001000544" "AO090001000556" "AO090003000530" [13] "AO090003000544" "AO090003000600" "AO090003000832" "AO090003001211" [17] "AO090003001212" "AO090003001252" "AO090003001297" "AO090003001326" [21] "AO090003001328" "AO090003001341" "AO090003001382" "AO090003001412" [25] "AO090003001425" "AO090003001448" "AO090003001450" "AO090003001451" [29] "AO090003001456" "AO090003001514" "AO090005000041" "AO090005000044" [33] "AO090005000054" "AO090005000055" "AO090005000189" "AO090005000258" [37] "AO090005000284" "AO090005000371" "AO090005000427" "AO090005000483" [41] "AO090005000484" "AO090005000491" "AO090005000609" "AO090005000656" [45] "AO090005000657" "AO090005000670" "AO090005000671" "AO090005000805" [49] "AO090005000836" "AO090005000899" "AO090005000949" "AO090005000951" [53] "AO090005001019" "AO090005001081" "AO090005001090" "AO090005001139" [57] "AO090005001281" "AO090005001347" "AO090005001379" "AO090005001457" [61] "AO090005001521" "AO090005001527" "AO090005001596" "AO090005001618" [65] "AO090009000017" "AO090009000040" "AO090009000054" "AO090009000120" [69] "AO090009000132" "AO090009000139" "AO090009000144" "AO090009000173" [73] "AO090009000417" "AO090009000511" "AO090009000545" "AO090010000015" [77] "AO090010000096" "AO090010000178" "AO090010000179" "AO090010000336" [81] "AO090010000348" "AO090010000571" "AO090010000618" "AO090010000683" [85] "AO090010000743" "AO090010000759" "AO090011000040" "AO090011000042" [89] "AO090011000051" "AO090011000074" "AO090011000131" "AO090011000142" [93] "AO090011000181" "AO090011000200" "AO090011000249" "AO090011000252" [97] "AO090011000253" "AO090011000256" "AO090011000287" "AO090011000449" [101] "AO090011000461" "AO090011000466" "AO090011000520" "AO090011000565" [105] "AO090011000692" "AO090011000695" "AO090011000750" "AO090011000757" [109] "AO090011000808" "AO090011000820" "AO090011000865" "AO090011t00006" [113] "AO090012000063" "AO090012000064" "AO090012000209" "AO090012000218" [117] "AO090012000219" "AO090012000221" "AO090012000343" "AO090012000478" [121] "AO090012000617" "AO090012000618" "AO090012000669" "AO090012000731" [125] "AO090012000754" "AO090012000871" "AO090020000049" "AO090020000149" [129] "AO090020000440" "AO090020000527" "AO090020000532" "AO090020000571" [133] "AO090020000585" "AO090020000631" "AO090023000044" "AO090023000076" [137] "AO090023000079" "AO090023000080" "AO090023000088" "AO090023000323" [141] "AO090023000352" "AO090023000387" "AO090023000415" "AO090023000439" [145] "AO090023000480" "AO090023000508" "AO090023000564" "AO090023000571" [149] "AO090023000590" "AO090023000636" "AO090023000730" "AO090023000786" [153] "AO090023000848" "AO090023000942" "AO090023000962" "AO090023000970" [157] "AO090023000974" "AO090023000984" "AO090023000988" "AO090026000002" [161] "AO090026000003" "AO090026000004" "AO090026000013" "AO090026000033" [165] "AO090026000060" "AO090026000061" "AO090026000076" "AO090026000089" [169] "AO090026000098" "AO090026000101" "AO090026000107" "AO090026000151" [173] "AO090026000175" "AO090026000199" "AO090026000251" "AO090026000257" [177] "AO090026000300" "AO090026000312" "AO090026000461" "AO090026000589" [181] "AO090026000721" "AO090026000772" "AO090038000189" "AO090038000388" [185] "AO090038000389" "AO090038000475" "AO090102000087" "AO090102000309" [189] "AO090102000346" "AO090102000386" "AO090102000412" "AO090102000414" [193] "AO090102000563" "AO090103000003" "AO090103000073" "AO090103000096" [197] "AO090103000098" "AO090103000149" "AO090103000260" "AO090103000268" [201] "AO090103000307" "AO090103000345" "AO090103000360" "AO090103000406" [205] "AO090103000435" "AO090103000471" "AO090103000472" "AO090103000474" [209] "AO090103000494" "AO090103000495" "AO090103000496" "AO090103000497" [213] "AO090103000508" "AO090113000059" "AO090113000130" "AO090113000143" [217] "AO090113000188" "AO090120000241" "AO090120000243" "AO090120000311" [221] "AO090120000382" "AO090120000406" "AO090120000417" "AO090120000476" [225] "AO090124000010" "AO090124000011" "AO090124000023" "AO090124000048" [229] "AO090124000056" "AO090124000086" "AO090138000091" "AO090138000096" [233] "AO090138000114" "AO090138000202" "AO090166000093" "AO090166000094" [237] "AO090166000095" "AO090166000121" "AO090206000126" "AO090701000156" [241] "AO090701000202" "AO090701000238" "AO090701000288" "AO090701000353" [245] "AO090701000370" "AO090701000404" "AO090701000406" "AO090701000471" [249] "AO090701000472" "AO090701000474" "AO090701000525" "AO090701000564" [253] "AO090701000565" "AO090701000569" "AO090701000673" "AO090701000744" [257] "AO090701000806" "AO090701000817" "AO090701000850" "AO090701000853" [261] "AO090701000886" -------------------------------------------------------------- No enriched GO terms. -------------------------------------------------------------- No enriched KEGG pathways. ######################################################################################################################## Cluster number 22 Number of genes in cluster 22 is: 360 Genes in cluster 22 are: [1] "AO090001000006" "AO090001000007" "AO090001000008" "AO090001000029" [5] "AO090001000121" "AO090001000143" "AO090001000149" "AO090001000183" [9] "AO090001000186" "AO090001000193" "AO090001000257" "AO090001000286" [13] "AO090001000295" "AO090001000321" "AO090001000360" "AO090001000414" [17] "AO090001000551" "AO090001000590" "AO090001000598" "AO090001000599" [21] "AO090001000649" "AO090003000026" "AO090003000028" "AO090003000105" [25] "AO090003000115" "AO090003000116" "AO090003000129" "AO090003000135" [29] "AO090003000153" "AO090003000227" "AO090003000228" "AO090003000243" [33] "AO090003000244" "AO090003000302" "AO090003000328" "AO090003000357" [37] "AO090003000493" "AO090003000494" "AO090003000564" "AO090003000578" [41] "AO090003000678" "AO090003000696" "AO090003000703" "AO090003000741" [45] "AO090003000751" "AO090003000752" "AO090003000753" "AO090003000795" [49] "AO090003000851" "AO090003000866" "AO090003000876" "AO090003000910" [53] "AO090003000932" "AO090003001112" "AO090003001188" "AO090003001260" [57] "AO090003001263" "AO090003001290" "AO090003001292" "AO090003001386" [61] "AO090003001408" "AO090003001409" "AO090003001422" "AO090003001501" [65] "AO090003001502" "AO090003001503" "AO090003001512" "AO090003001526" [69] "AO090005000064" "AO090005000120" "AO090005000196" "AO090005000198" [73] "AO090005000309" "AO090005000318" "AO090005000337" "AO090005000391" [77] "AO090005000457" "AO090005000595" "AO090005000624" "AO090005000684" [81] "AO090005000687" "AO090005000693" "AO090005000700" "AO090005000702" [85] "AO090005000703" "AO090005000725" "AO090005000784" "AO090005000817" [89] "AO090005000871" "AO090005000882" "AO090005001044" "AO090005001067" [93] "AO090005001068" "AO090005001069" "AO090005001078" "AO090005001109" [97] "AO090005001229" "AO090005001256" "AO090005001257" "AO090005001325" [101] "AO090005001331" "AO090005001344" "AO090005001364" "AO090005001453" [105] "AO090005001576" "AO090009000063" "AO090009000159" "AO090009000285" [109] "AO090009000290" "AO090009000314" "AO090009000382" "AO090009000441" [113] "AO090009000446" "AO090009000486" "AO090009000521" "AO090009000585" [117] "AO090009000588" "AO090009000635" "AO090010000037" "AO090010000082" [121] "AO090010000086" "AO090010000102" "AO090010000147" "AO090010000168" [125] "AO090010000208" "AO090010000367" "AO090010000391" "AO090010000440" [129] "AO090010000518" "AO090010000562" "AO090010000589" "AO090010000592" [133] "AO090010000646" "AO090010000744" "AO090010000748" "AO090011000024" [137] "AO090011000066" "AO090011000070" "AO090011000084" "AO090011000117" [141] "AO090011000182" "AO090011000183" "AO090011000218" "AO090011000219" [145] "AO090011000246" "AO090011000255" "AO090011000264" "AO090011000293" [149] "AO090011000294" "AO090011000296" "AO090011000298" "AO090011000303" [153] "AO090011000307" "AO090011000325" "AO090011000334" "AO090011000369" [157] "AO090011000370" "AO090011000436" "AO090011000447" "AO090011000454" [161] "AO090011000602" "AO090011000640" "AO090011000641" "AO090011000654" [165] "AO090011000839" "AO090011000848" "AO090011000869" "AO090011000870" [169] "AO090011000910" "AO090011000911" "AO090012000020" "AO090012000073" [173] "AO090012000102" "AO090012000116" "AO090012000144" "AO090012000151" [177] "AO090012000232" "AO090012000233" "AO090012000234" "AO090012000280" [181] "AO090012000355" "AO090012000442" "AO090012000446" "AO090012000451" [185] "AO090012000564" "AO090012000786" "AO090012000825" "AO090012000882" [189] "AO090012000888" "AO090012000960" "AO090012000964" "AO090020000033" [193] "AO090020000144" "AO090020000145" "AO090020000161" "AO090020000170" [197] "AO090020000211" "AO090020000227" "AO090020000302" "AO090020000324" [201] "AO090020000336" "AO090020000361" "AO090020000369" "AO090020000492" [205] "AO090020000493" "AO090020000546" "AO090020000572" "AO090020000595" [209] "AO090020000676" "AO090020000699" "AO090023000066" "AO090023000068" [213] "AO090023000155" "AO090023000162" "AO090023000212" "AO090023000213" [217] "AO090023000234" "AO090023000292" "AO090023000295" "AO090023000337" [221] "AO090023000416" "AO090023000450" "AO090023000454" "AO090023000456" [225] "AO090023000467" "AO090023000552" "AO090023000634" "AO090023000668" [229] "AO090023000669" "AO090023000706" "AO090023000783" "AO090023000792" [233] "AO090023000869" "AO090023000881" "AO090023000902" "AO090023000995" [237] "AO090026000094" "AO090026000173" "AO090026000211" "AO090026000217" [241] "AO090026000219" "AO090026000316" "AO090026000459" "AO090026000555" [245] "AO090026000681" "AO090026000682" "AO090026000739" "AO090026000748" [249] "AO090026000760" "AO090038000025" "AO090038000047" "AO090038000049" [253] "AO090038000051" "AO090038000057" "AO090038000058" "AO090038000109" [257] "AO090038000112" "AO090038000235" "AO090038000256" "AO090038000266" [261] "AO090038000322" "AO090038000343" "AO090038000381" "AO090038000561" [265] "AO090102000013" "AO090102000014" "AO090102000076" "AO090102000079" [269] "AO090102000094" "AO090102000104" "AO090102000184" "AO090102000185" [273] "AO090102000191" "AO090102000238" "AO090102000264" "AO090102000283" [277] "AO090102000298" "AO090102000341" "AO090102000410" "AO090102000411" [281] "AO090102000444" "AO090102000551" "AO090102000600" "AO090103000026" [285] "AO090103000047" "AO090103000125" "AO090103000202" "AO090103000234" [289] "AO090103000243" "AO090103000283" "AO090103000287" "AO090103000294" [293] "AO090103000313" "AO090103000334" "AO090103000390" "AO090103000401" [297] "AO090103000418" "AO090103000419" "AO090103000492" "AO090113000043" [301] "AO090113000107" "AO090113000108" "AO090113000182" "AO090113000183" [305] "AO090120000008" "AO090120000160" "AO090120000161" "AO090120000182" [309] "AO090120000218" "AO090120000392" "AO090120000425" "AO090120000462" [313] "AO090124000003" "AO090124000047" "AO090124000088" "AO090138000010" [317] "AO090138000034" "AO090138000035" "AO090138000039" "AO090138000040" [321] "AO090138000053" "AO090138000065" "AO090138000085" "AO090138000116" [325] "AO090138000154" "AO090166000012" "AO090166000072" "AO090166000075" [329] "AO090166000096" "AO090206000060" "AO090206000064" "AO090206000079" [333] "AO090701000013" "AO090701000035" "AO090701000110" "AO090701000128" [337] "AO090701000175" "AO090701000180" "AO090701000181" "AO090701000234" [341] "AO090701000249" "AO090701000276" "AO090701000319" "AO090701000417" [345] "AO090701000430" "AO090701000454" "AO090701000455" "AO090701000458" [349] "AO090701000459" "AO090701000460" "AO090701000465" "AO090701000526" [353] "AO090701000541" "AO090701000599" "AO090701000602" "AO090701000712" [357] "AO090701000809" "AO090701000839" "AO090701000840" "AO090701000892" -------------------------------------------------------------- Number of enriched GO terms: 5 GO terms are: [1] "DNA-binding transcription factor activity, RNA polymerase II-specific" [2] "regulation of transcription by RNA polymerase II" [3] "transcription by RNA polymerase II" [4] "DNA-binding transcription factor activity" [5] "transcription regulator activity" Parent terms retrieved using org.Sc.sgd.db (S. cerevisiae) Biological process parent terms of GO terms are: term GO:0006357 "regulation of transcription by RNA polymerase II" GO:0006366 "transcription by RNA polymerase II" parentTerm GO:0006357 "regulation of transcription by RNA polymerase II" GO:0006366 "regulation of transcription by RNA polymerase II" Number of Biological process parent terms: regulation of transcription by RNA polymerase II 2 Molecular function parent terms of GO terms are: term GO:0000981 "DNA-binding transcription factor activity, RNA polymerase II-specific" GO:0003700 "DNA-binding transcription factor activity" GO:0140110 "transcription regulator activity" parentTerm GO:0000981 "DNA-binding transcription factor activity, RNA polymerase II-specific" GO:0003700 "DNA-binding transcription factor activity, RNA polymerase II-specific" GO:0140110 "DNA-binding transcription factor activity, RNA polymerase II-specific" Number of Molecular function parent terms: DNA-binding transcription factor activity, RNA polymerase II-specific 3 No Cellular component parent terms found. Number of GO terms for which NO parent term was found: 0 -------------------------------------------------------------- No enriched KEGG pathways. ######################################################################################################################## Cluster number 23 Number of genes in cluster 23 is: 388 Genes in cluster 23 are: [1] "AO090001000009" "AO090001000040" "AO090001000140" "AO090001000372" [5] "AO090001000386" "AO090001000390" "AO090001000391" "AO090001000404" [9] "AO090001000516" "AO090001000604" "AO090001000648" "AO090003000006" [13] "AO090003000011" "AO090003000035" "AO090003000045" "AO090003000075" [17] "AO090003000099" "AO090003000150" "AO090003000287" "AO090003000337" [21] "AO090003000338" "AO090003000354" "AO090003000375" "AO090003000402" [25] "AO090003000464" "AO090003000472" "AO090003000489" "AO090003000535" [29] "AO090003000659" "AO090003000734" "AO090003000747" "AO090003000755" [33] "AO090003000788" "AO090003000792" "AO090003000793" "AO090003000794" [37] "AO090003000836" "AO090003000852" "AO090003000861" "AO090003000880" [41] "AO090003000886" "AO090003000888" "AO090003000915" "AO090003000923" [45] "AO090003000941" "AO090003000950" "AO090003000951" "AO090003000952" [49] "AO090003000977" "AO090003001009" "AO090003001047" "AO090003001167" [53] "AO090003001189" "AO090003001280" "AO090003001310" "AO090003001335" [57] "AO090003001426" "AO090003001427" "AO090003001434" "AO090003001449" [61] "AO090003001452" "AO090003001529" "AO090003001530" "AO090003001542" [65] "AO090003001543" "AO090005000026" "AO090005000045" "AO090005000046" [69] "AO090005000071" "AO090005000114" "AO090005000149" "AO090005000169" [73] "AO090005000183" "AO090005000317" "AO090005000374" "AO090005000400" [77] "AO090005000486" "AO090005000559" "AO090005000573" "AO090005000628" [81] "AO090005000633" "AO090005000639" "AO090005000644" "AO090005000707" [85] "AO090005000763" "AO090005000785" "AO090005000827" "AO090005000867" [89] "AO090005000895" "AO090005000906" "AO090005000933" "AO090005000957" [93] "AO090005000958" "AO090005000964" "AO090005000965" "AO090005001046" [97] "AO090005001051" "AO090005001141" "AO090005001173" "AO090005001236" [101] "AO090005001293" "AO090005001295" "AO090005001318" "AO090005001345" [105] "AO090005001380" "AO090005001421" "AO090005001481" "AO090005001482" [109] "AO090005001495" "AO090005001524" "AO090005001525" "AO090005001538" [113] "AO090005001559" "AO090005001637" "AO090009000039" "AO090009000068" [117] "AO090009000069" "AO090009000071" "AO090009000101" "AO090009000140" [121] "AO090009000145" "AO090009000160" "AO090009000195" "AO090009000214" [125] "AO090009000244" "AO090009000288" "AO090009000383" "AO090009000398" [129] "AO090009000428" "AO090009000429" "AO090009000478" "AO090009000524" [133] "AO090009000554" "AO090009000568" "AO090009000573" "AO090009000658" [137] "AO090009000663" "AO090009000703" "AO090010000011" "AO090010000081" [141] "AO090010000097" "AO090010000107" "AO090010000119" "AO090010000144" [145] "AO090010000145" "AO090010000177" "AO090010000205" "AO090010000301" [149] "AO090010000302" "AO090010000304" "AO090010000306" "AO090010000324" [153] "AO090010000327" "AO090010000557" "AO090010000600" "AO090010000622" [157] "AO090010000660" "AO090010000684" "AO090010000687" "AO090010000735" [161] "AO090010000749" "AO090010000762" "AO090011000016" "AO090011000017" [165] "AO090011000054" "AO090011000077" "AO090011000091" "AO090011000097" [169] "AO090011000111" "AO090011000227" "AO090011000228" "AO090011000242" [173] "AO090011000288" "AO090011000339" "AO090011000371" "AO090011000372" [177] "AO090011000391" "AO090011000396" "AO090011000397" "AO090011000435" [181] "AO090011000474" "AO090011000482" "AO090011000517" "AO090011000611" [185] "AO090011000612" "AO090011000682" "AO090011000730" "AO090011000815" [189] "AO090011000866" "AO090011000867" "AO090011000871" "AO090011000883" [193] "AO090011000900" "AO090011000938" "AO090011000944" "AO090012000013" [197] "AO090012000021" "AO090012000025" "AO090012000038" "AO090012000054" [201] "AO090012000069" "AO090012000148" "AO090012000153" "AO090012000158" [205] "AO090012000179" "AO090012000187" "AO090012000275" "AO090012000331" [209] "AO090012000332" "AO090012000350" "AO090012000357" "AO090012000439" [213] "AO090012000559" "AO090012000562" "AO090012000563" "AO090012000784" [217] "AO090012000809" "AO090012000930" "AO090012000939" "AO090012000943" [221] "AO090020000001" "AO090020000030" "AO090020000140" "AO090020000217" [225] "AO090020000326" "AO090020000374" "AO090020000504" "AO090020000529" [229] "AO090020000531" "AO090020000563" "AO090020000567" "AO090020000656" [233] "AO090020000660" "AO090020000670" "AO090020000671" "AO090020000702" [237] "AO090020000705" "AO090020000713" "AO090023000067" "AO090023000197" [241] "AO090023000202" "AO090023000232" "AO090023000236" "AO090023000254" [245] "AO090023000279" "AO090023000281" "AO090023000394" "AO090023000403" [249] "AO090023000420" "AO090023000455" "AO090023000465" "AO090023000500" [253] "AO090023000586" "AO090023000655" "AO090023000686" "AO090023000743" [257] "AO090023000751" "AO090023000855" "AO090023000868" "AO090023000884" [261] "AO090023000922" "AO090023000933" "AO090023000945" "AO090023000980" [265] "AO090023000987" "AO090023000994" "AO090023001003" "AO090026000009" [269] "AO090026000057" "AO090026000067" "AO090026000078" "AO090026000162" [273] "AO090026000168" "AO090026000238" "AO090026000347" "AO090026000405" [277] "AO090026000409" "AO090026000414" "AO090026000438" "AO090026000453" [281] "AO090026000563" "AO090026000590" "AO090026000657" "AO090026000671" [285] "AO090026000823" "AO090026000830" "AO090038000002" "AO090038000016" [289] "AO090038000043" "AO090038000084" "AO090038000260" "AO090038000331" [293] "AO090038000332" "AO090038000337" "AO090038000529" "AO090038000577" [297] "AO090038000584" "AO090038000631" "AO090102000027" "AO090102000032" [301] "AO090102000069" "AO090102000111" "AO090102000122" "AO090102000204" [305] "AO090102000216" "AO090102000247" "AO090102000330" "AO090102000401" [309] "AO090102000402" "AO090102000449" "AO090102000569" "AO090102000581" [313] "AO090103000018" "AO090103000027" "AO090103000059" "AO090103000090" [317] "AO090103000129" "AO090103000187" "AO090103000235" "AO090103000298" [321] "AO090103000314" "AO090103000369" "AO090103000372" "AO090103000404" [325] "AO090103000405" "AO090103000422" "AO090103000436" "AO090103000439" [329] "AO090113000012" "AO090113000040" "AO090113000097" "AO090113000124" [333] "AO090120000011" "AO090120000012" "AO090120000013" "AO090120000020" [337] "AO090120000043" "AO090120000054" "AO090120000059" "AO090120000060" [341] "AO090120000067" "AO090120000074" "AO090120000107" "AO090120000167" [345] "AO090120000190" "AO090120000229" "AO090120000286" "AO090120000287" [349] "AO090120000393" "AO090120000440" "AO090124000053" "AO090124000061" [353] "AO090124000064" "AO090124000072" "AO090138000032" "AO090138000052" [357] "AO090138000086" "AO090138000090" "AO090138000109" "AO090138000152" [361] "AO090138000153" "AO090166000038" "AO090206000006" "AO090206000048" [365] "AO090206000068" "AO090206000122" "AO090701000051" "AO090701000196" [369] "AO090701000204" "AO090701000229" "AO090701000248" "AO090701000280" [373] "AO090701000371" "AO090701000379" "AO090701000391" "AO090701000416" [377] "AO090701000422" "AO090701000436" "AO090701000484" "AO090701000505" [381] "AO090701000527" "AO090701000575" "AO090701000608" "AO090701000634" [385] "AO090701000771" "AO090701000772" "AO090701000776" "AO090701000847" -------------------------------------------------------------- Number of enriched GO terms: 5 GO terms are: [1] "DNA-binding transcription factor activity, RNA polymerase II-specific" [2] "DNA-binding transcription factor activity" [3] "transcription regulator activity" [4] "regulation of transcription by RNA polymerase II" [5] "transcription by RNA polymerase II" Parent terms retrieved using org.Sc.sgd.db (S. cerevisiae) Biological process parent terms of GO terms are: term GO:0006357 "regulation of transcription by RNA polymerase II" GO:0006366 "transcription by RNA polymerase II" parentTerm GO:0006357 "regulation of transcription by RNA polymerase II" GO:0006366 "regulation of transcription by RNA polymerase II" Number of Biological process parent terms: regulation of transcription by RNA polymerase II 2 Molecular function parent terms of GO terms are: term GO:0000981 "DNA-binding transcription factor activity, RNA polymerase II-specific" GO:0003700 "DNA-binding transcription factor activity" GO:0140110 "transcription regulator activity" parentTerm GO:0000981 "DNA-binding transcription factor activity, RNA polymerase II-specific" GO:0003700 "DNA-binding transcription factor activity, RNA polymerase II-specific" GO:0140110 "DNA-binding transcription factor activity, RNA polymerase II-specific" Number of Molecular function parent terms: DNA-binding transcription factor activity, RNA polymerase II-specific 3 No Cellular component parent terms found. Number of GO terms for which NO parent term was found: 0 -------------------------------------------------------------- No enriched KEGG pathways. ######################################################################################################################## Cluster number 24 Number of genes in cluster 24 is: 273 Genes in cluster 24 are: [1] "AO090001000016" "AO090001000204" "AO090001000215" "AO090001000271" [5] "AO090001000272" "AO090001000273" "AO090001000341" "AO090001000425" [9] "AO090001000444" "AO090001000654" "AO090001000655" "AO090001000669" [13] "AO090001000684" "AO090001000694" "AO090001000729" "AO090001000730" [17] "AO090003000057" "AO090003000076" "AO090003000100" "AO090003000133" [21] "AO090003000220" "AO090003000231" "AO090003000232" "AO090003000296" [25] "AO090003000300" "AO090003000304" "AO090003000453" "AO090003000469" [29] "AO090003000568" "AO090003000569" "AO090003000588" "AO090003000733" [33] "AO090003000765" "AO090003000766" "AO090003000835" "AO090003000913" [37] "AO090003000949" "AO090003000958" "AO090003000976" "AO090003001000" [41] "AO090003001059" "AO090003001060" "AO090003001127" "AO090003001129" [45] "AO090003001130" "AO090003001131" "AO090003001147" "AO090003001148" [49] "AO090003001153" "AO090003001162" "AO090003001337" "AO090003001343" [53] "AO090003001380" "AO090005000116" "AO090005000143" "AO090005000146" [57] "AO090005000173" "AO090005000174" "AO090005000197" "AO090005000293" [61] "AO090005000376" "AO090005000430" "AO090005000465" "AO090005000688" [65] "AO090005000695" "AO090005000727" "AO090005000783" "AO090005000786" [69] "AO090005000787" "AO090005000850" "AO090005000856" "AO090005000876" [73] "AO090005000980" "AO090005001017" "AO090005001054" "AO090005001058" [77] "AO090005001061" "AO090005001131" "AO090005001133" "AO090005001152" [81] "AO090005001153" "AO090005001187" "AO090005001216" "AO090005001221" [85] "AO090005001250" "AO090005001261" "AO090005001269" "AO090005001292" [89] "AO090005001359" "AO090005001360" "AO090005001363" "AO090005001390" [93] "AO090005001447" "AO090005001514" "AO090005001599" "AO090009000029" [97] "AO090009000208" "AO090009000209" "AO090009000230" "AO090009000270" [101] "AO090009000282" "AO090009000316" "AO090009000369" "AO090009000379" [105] "AO090009000414" "AO090009000419" "AO090009000555" "AO090009000696" [109] "AO090010000270" "AO090010000375" "AO090010000439" "AO090010000613" [113] "AO090010000636" "AO090010000647" "AO090010000771" "AO090011000019" [117] "AO090011000160" "AO090011000223" "AO090011000308" "AO090011000455" [121] "AO090011000458" "AO090011000481" "AO090011000511" "AO090011000521" [125] "AO090011000553" "AO090011000559" "AO090011000570" "AO090011000622" [129] "AO090011000629" "AO090011000646" "AO090011000793" "AO090011000844" [133] "AO090011000851" "AO090011000918" "AO090011000935" "AO090012000026" [137] "AO090012000113" "AO090012000114" "AO090012000127" "AO090012000152" [141] "AO090012000184" "AO090012000188" "AO090012000205" "AO090012000329" [145] "AO090012000405" "AO090012000469" "AO090012000504" "AO090012000513" [149] "AO090012000545" "AO090012000598" "AO090012000727" "AO090012000728" [153] "AO090012000763" "AO090012000847" "AO090012000947" "AO090012000985" [157] "AO090020000014" "AO090020000021" "AO090020000025" "AO090020000074" [161] "AO090020000092" "AO090020000096" "AO090020000136" "AO090020000311" [165] "AO090020000317" "AO090020000333" "AO090020000334" "AO090020000343" [169] "AO090020000354" "AO090020000363" "AO090020000581" "AO090020000706" [173] "AO090023000063" "AO090023000160" "AO090023000196" "AO090023000198" [177] "AO090023000210" "AO090023000230" "AO090023000242" "AO090023000313" [181] "AO090023000628" "AO090023000693" "AO090023000709" "AO090023000729" [185] "AO090023000753" "AO090023000791" "AO090023000814" "AO090023000827" [189] "AO090023000828" "AO090023000829" "AO090023000979" "AO090026000127" [193] "AO090026000178" "AO090026000200" "AO090026000226" "AO090026000227" [197] "AO090026000324" "AO090026000611" "AO090026000626" "AO090026000665" [201] "AO090026000687" "AO090026000714" "AO090026000743" "AO090026000827" [205] "AO090038000079" "AO090038000080" "AO090038000174" "AO090038000271" [209] "AO090038000292" "AO090038000350" "AO090038000352" "AO090038000373" [213] "AO090038000491" "AO090102000021" "AO090102000024" "AO090102000025" [217] "AO090102000026" "AO090102000039" "AO090102000366" "AO090102000575" [221] "AO090103000021" "AO090103000029" "AO090103000038" "AO090103000039" [225] "AO090103000070" "AO090103000083" "AO090103000097" "AO090103000099" [229] "AO090103000152" "AO090103000347" "AO090113000088" "AO090120000001" [233] "AO090120000090" "AO090120000179" "AO090120000201" "AO090120000288" [237] "AO090120000299" "AO090120000357" "AO090120000381" "AO090120000460" [241] "AO090120000482" "AO090120000483" "AO090124000001" "AO090124000033" [245] "AO090124000043" "AO090124000052" "AO090124000054" "AO090124000080" [249] "AO090138000063" "AO090138000196" "AO090166000063" "AO090166000071" [253] "AO090206000033" "AO090206000034" "AO090701000010" "AO090701000056" [257] "AO090701000113" "AO090701000116" "AO090701000134" "AO090701000135" [261] "AO090701000136" "AO090701000144" "AO090701000251" "AO090701000337" [265] "AO090701000514" "AO090701000534" "AO090701000573" "AO090701000576" [269] "AO090701000623" "AO090701000624" "AO090701000638" "AO090701000791" [273] "AO090701000810" -------------------------------------------------------------- Number of enriched GO terms: 108 GO terms are: [1] "DNA metabolic process" [2] "DNA-templated DNA replication" [3] "catalytic activity, acting on DNA" [4] "double-stranded DNA binding" [5] "DNA replication" [6] "replication fork" [7] "DNA replication initiation" [8] "nuclear replication fork" [9] "ATP-dependent activity, acting on DNA" [10] "single-stranded DNA binding" [11] "regulation of DNA metabolic process" [12] "chromosome" [13] "double-strand break repair via break-induced replication" [14] "replication fork protection complex" [15] "nuclear DNA replication" [16] "cell cycle DNA replication" [17] "nuclear chromosome" [18] "regulation of DNA-templated DNA replication" [19] "chromosome organization" [20] "regulation of DNA replication" [21] "regulation of DNA-templated DNA replication initiation" [22] "DNA conformation change" [23] "DNA damage response" [24] "DNA replication origin binding" [25] "DNA repair" [26] "DNA strand elongation involved in DNA replication" [27] "DNA strand elongation" [28] "double-strand break repair via homologous recombination" [29] "DNA helicase activity" [30] "protein-DNA complex assembly" [31] "chromosomal region" [32] "protein-DNA complex organization" [33] "mitotic DNA replication" [34] "recombinational repair" [35] "double-strand break repair" [36] "cellular response to stress" [37] "DNA geometric change" [38] "DNA duplex unwinding" [39] "nuclear protein-containing complex" [40] "chromatin binding" [41] "catalytic activity, acting on a nucleic acid" [42] "cell cycle process" [43] "response to stress" [44] "ATP-dependent activity" [45] "cell cycle" [46] "meiotic cell cycle process" [47] "cellular response to stimulus" [48] "membrane lipid biosynthetic process" [49] "meiotic cell cycle" [50] "DNA recombination" [51] "protein-DNA complex" [52] "mitotic cell cycle process" [53] "nucleoplasm" [54] "sequence-specific double-stranded DNA binding" [55] "helicase activity" [56] "protein-containing complex organization" [57] "chromosome, telomeric region" [58] "sequence-specific DNA binding" [59] "mitotic cell cycle" [60] "sexual reproduction" [61] "reproductive process" [62] "protein-containing complex binding" [63] "membrane lipid metabolic process" [64] "protein modification process" [65] "GPI anchor metabolic process" [66] "GPI anchor biosynthetic process" [67] "glycolipid metabolic process" [68] "glycolipid biosynthetic process" [69] "liposaccharide metabolic process" [70] "chromatin organization" [71] "organelle organization" [72] "chromatin remodeling" [73] "protein-containing complex assembly" [74] "GO:0000790" [75] "protein lipidation" [76] "lipoprotein biosynthetic process" [77] "meiosis I cell cycle process" [78] "lipoprotein metabolic process" [79] "mismatch repair" [80] "negative regulation of cellular process" [81] "chromatin" [82] "negative regulation of biological process" [83] "DNA damage sensor activity" [84] "ATP-dependent DNA damage sensor activity" [85] "nuclear lumen" [86] "heterochromatin formation" [87] "epigenetic regulation of gene expression" [88] "negative regulation of gene expression, epigenetic" [89] "heterochromatin organization" [90] "catalytic complex" [91] "reproduction" [92] "constitutive heterochromatin formation" [93] "cellular component assembly" [94] "macromolecule modification" [95] "telomere organization" [96] "phosphatidylinositol biosynthetic process" [97] "glycerophospholipid biosynthetic process" [98] "microtubule cytoskeleton" [99] "centromere complex assembly" [100] "glycerolipid biosynthetic process" [101] "pyrophosphatase activity" [102] "phospholipid biosynthetic process" [103] "hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides" [104] "hydrolase activity, acting on acid anhydrides" [105] "EC:3.6.1.15" [106] "ribonucleoside triphosphate phosphatase activity" [107] "chromosome, centromeric region" [108] "phosphatidylinositol metabolic process" Parent terms retrieved using org.Sc.sgd.db (S. cerevisiae) Biological process parent terms of GO terms are: term GO:0006259 "DNA metabolic process" GO:0006261 "DNA-templated DNA replication" GO:0006260 "DNA replication" GO:0006270 "DNA replication initiation" GO:0051052 "regulation of DNA metabolic process" GO:0000727 "double-strand break repair via break-induced replication" GO:0044786 "cell cycle DNA replication" GO:0033260 "nuclear DNA replication" GO:0090329 "regulation of DNA-templated DNA replication" GO:0051276 "chromosome organization" GO:0006275 "regulation of DNA replication" GO:0030174 "regulation of DNA-templated DNA replication initiation" GO:0071103 "DNA conformation change" GO:0006974 "DNA damage response" GO:0006281 "DNA repair" GO:0022616 "DNA strand elongation" GO:0006271 "DNA strand elongation involved in DNA replication" GO:0000724 "double-strand break repair via homologous recombination" GO:0065004 "protein-DNA complex assembly" GO:0071824 "protein-DNA complex organization" GO:1902969 "mitotic DNA replication" GO:0000725 "recombinational repair" GO:0006302 "double-strand break repair" GO:0033554 "cellular response to stress" GO:0032508 "DNA duplex unwinding" GO:0032392 "DNA geometric change" GO:0022402 "cell cycle process" GO:0006950 "response to stress" GO:0007049 "cell cycle" GO:1903046 "meiotic cell cycle process" GO:0051716 "cellular response to stimulus" GO:0046467 "membrane lipid biosynthetic process" GO:0051321 "meiotic cell cycle" GO:0006310 "DNA recombination" GO:1903047 "mitotic cell cycle process" GO:0043933 "protein-containing complex organization" GO:0000278 "mitotic cell cycle" GO:0019953 "sexual reproduction" GO:0022414 "reproductive process" GO:0006643 "membrane lipid metabolic process" GO:0036211 "protein modification process" GO:1903509 "liposaccharide metabolic process" GO:0006664 "glycolipid metabolic process" GO:0009247 "glycolipid biosynthetic process" GO:0006505 "GPI anchor metabolic process" GO:0006506 "GPI anchor biosynthetic process" GO:0006325 "chromatin organization" GO:0006996 "organelle organization" GO:0006338 "chromatin remodeling" GO:0065003 "protein-containing complex assembly" GO:0042158 "lipoprotein biosynthetic process" GO:0006497 "protein lipidation" GO:0061982 "meiosis I cell cycle process" GO:0042157 "lipoprotein metabolic process" GO:0006298 "mismatch repair" GO:0048523 "negative regulation of cellular process" GO:0048519 "negative regulation of biological process" GO:0070828 "heterochromatin organization" GO:0045814 "negative regulation of gene expression, epigenetic" GO:0040029 "epigenetic regulation of gene expression" GO:0031507 "heterochromatin formation" GO:0000003 "reproduction" GO:0022607 "cellular component assembly" GO:0043412 "macromolecule modification" GO:0032200 "telomere organization" GO:0006661 "phosphatidylinositol biosynthetic process" GO:0046474 "glycerophospholipid biosynthetic process" GO:0034508 "centromere complex assembly" GO:0045017 "glycerolipid biosynthetic process" GO:0008654 "phospholipid biosynthetic process" GO:0046488 "phosphatidylinositol metabolic process" parentTerm GO:0006259 "DNA metabolic process" GO:0006261 "DNA metabolic process" GO:0006260 "DNA metabolic process" GO:0006270 "DNA metabolic process" GO:0051052 "DNA metabolic process" GO:0000727 "DNA metabolic process" GO:0044786 "DNA metabolic process" GO:0033260 "DNA metabolic process" GO:0090329 "DNA metabolic process" GO:0051276 "chromosome organization" GO:0006275 "DNA metabolic process" GO:0030174 "DNA metabolic process" GO:0071103 "chromosome organization" GO:0006974 "DNA damage response" GO:0006281 "DNA damage response" GO:0022616 "DNA metabolic process" GO:0006271 "DNA metabolic process" GO:0000724 "DNA metabolic process" GO:0065004 "protein-DNA complex assembly" GO:0071824 "protein-DNA complex assembly" GO:1902969 "DNA metabolic process" GO:0000725 "DNA metabolic process" GO:0006302 "DNA metabolic process" GO:0033554 "DNA damage response" GO:0032508 "chromosome organization" GO:0032392 "chromosome organization" GO:0022402 "cell cycle process" GO:0006950 "DNA damage response" GO:0007049 "cell cycle process" GO:1903046 "meiotic cell cycle process" GO:0051716 "DNA damage response" GO:0046467 "membrane lipid biosynthetic process" GO:0051321 "meiotic cell cycle process" GO:0006310 "DNA metabolic process" GO:1903047 "cell cycle process" GO:0043933 "protein-DNA complex assembly" GO:0000278 "cell cycle process" GO:0019953 "meiotic cell cycle process" GO:0022414 "meiotic cell cycle process" GO:0006643 "membrane lipid biosynthetic process" GO:0036211 "protein modification process" GO:1903509 "membrane lipid biosynthetic process" GO:0006664 "membrane lipid biosynthetic process" GO:0009247 "membrane lipid biosynthetic process" GO:0006505 "membrane lipid biosynthetic process" GO:0006506 "membrane lipid biosynthetic process" GO:0006325 "protein-DNA complex assembly" GO:0006996 "chromosome organization" GO:0006338 "protein-DNA complex assembly" GO:0065003 "protein-DNA complex assembly" GO:0042158 "lipoprotein biosynthetic process" GO:0006497 "lipoprotein biosynthetic process" GO:0061982 "meiotic cell cycle process" GO:0042157 "lipoprotein biosynthetic process" GO:0006298 "DNA metabolic process" GO:0048523 "negative regulation of cellular process" GO:0048519 "negative regulation of cellular process" GO:0070828 "protein-DNA complex assembly" GO:0045814 "protein-DNA complex assembly" GO:0040029 "protein-DNA complex assembly" GO:0031507 "protein-DNA complex assembly" GO:0000003 "meiotic cell cycle process" GO:0022607 "protein-DNA complex assembly" GO:0043412 "protein modification process" GO:0032200 "chromosome organization" GO:0006661 "membrane lipid biosynthetic process" GO:0046474 "membrane lipid biosynthetic process" GO:0034508 "protein-DNA complex assembly" GO:0045017 "membrane lipid biosynthetic process" GO:0008654 "membrane lipid biosynthetic process" GO:0046488 "membrane lipid biosynthetic process" Number of Biological process parent terms: cell cycle process chromosome organization 4 6 DNA damage response DNA metabolic process 5 19 lipoprotein biosynthetic process meiotic cell cycle process 3 6 membrane lipid biosynthetic process negative regulation of cellular process 12 2 protein-DNA complex assembly protein modification process 12 2 Molecular function parent terms of GO terms are: term GO:0140097 "catalytic activity, acting on DNA" GO:0003690 "double-stranded DNA binding" GO:0008094 "ATP-dependent activity, acting on DNA" GO:0003697 "single-stranded DNA binding" GO:0003688 "DNA replication origin binding" GO:0003678 "DNA helicase activity" GO:0003682 "chromatin binding" GO:1990837 "sequence-specific double-stranded DNA binding" GO:0004386 "helicase activity" GO:0043565 "sequence-specific DNA binding" GO:0044877 "protein-containing complex binding" GO:0016462 "pyrophosphatase activity" GO:0016818 "hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides" GO:0016817 "hydrolase activity, acting on acid anhydrides" GO:0017111 "ribonucleoside triphosphate phosphatase activity" parentTerm GO:0140097 "catalytic activity, acting on DNA" GO:0003690 "double-stranded DNA binding" GO:0008094 "catalytic activity, acting on DNA" GO:0003697 "double-stranded DNA binding" GO:0003688 "double-stranded DNA binding" GO:0003678 "catalytic activity, acting on DNA" GO:0003682 "chromatin binding" GO:1990837 "double-stranded DNA binding" GO:0004386 "helicase activity" GO:0043565 "double-stranded DNA binding" GO:0044877 "chromatin binding" GO:0016462 "pyrophosphatase activity" GO:0016818 "pyrophosphatase activity" GO:0016817 "pyrophosphatase activity" GO:0017111 "pyrophosphatase activity" Number of Molecular function parent terms: catalytic activity, acting on DNA chromatin binding 3 2 double-stranded DNA binding helicase activity 5 1 pyrophosphatase activity 4 Cellular component parent terms of GO terms are: term GO:0005657 "replication fork" GO:0043596 "nuclear replication fork" GO:0005694 "chromosome" GO:0031298 "replication fork protection complex" GO:0000228 "nuclear chromosome" GO:0098687 "chromosomal region" GO:0140513 "nuclear protein-containing complex" GO:0032993 "protein-DNA complex" GO:0005654 "nucleoplasm" GO:0000781 "chromosome, telomeric region" GO:0000785 "chromatin" GO:0031981 "nuclear lumen" GO:1902494 "catalytic complex" GO:0015630 "microtubule cytoskeleton" GO:0000775 "chromosome, centromeric region" parentTerm GO:0005657 "replication fork" GO:0043596 "replication fork" GO:0005694 "replication fork" GO:0031298 "replication fork" GO:0000228 "replication fork" GO:0098687 "replication fork" GO:0140513 "nuclear protein-containing complex" GO:0032993 "nuclear protein-containing complex" GO:0005654 "nucleoplasm" GO:0000781 "replication fork" GO:0000785 "nuclear protein-containing complex" GO:0031981 "nucleoplasm" GO:1902494 "nuclear protein-containing complex" GO:0015630 "replication fork" GO:0000775 "replication fork" Number of Cellular component parent terms: nuclear protein-containing complex nucleoplasm 4 2 replication fork 9 Number of GO terms for which NO parent term was found: 7 No parent term was found for the following GO terms: [1] "catalytic activity, acting on a nucleic acid" [2] "ATP-dependent activity" [3] "GO:0000790" [4] "DNA damage sensor activity" [5] "ATP-dependent DNA damage sensor activity" [6] "constitutive heterochromatin formation" [7] "EC:3.6.1.15" -------------------------------------------------------------- Number of enriched KEGG pathways: 4 KEGG pathways are: [1] "Cell cycle - yeast - Aspergillus oryzae" [2] "DNA replication - Aspergillus oryzae" [3] "Meiosis - yeast - Aspergillus oryzae" [4] "Mismatch repair - Aspergillus oryzae" ######################################################################################################################## Cluster number 25 Number of genes in cluster 25 is: 266 Genes in cluster 25 are: [1] "AO090001000061" "AO090001000110" "AO090001000119" "AO090001000125" [5] "AO090001000145" "AO090001000150" "AO090001000171" "AO090001000243" [9] "AO090001000313" "AO090001000511" "AO090001000513" "AO090001000565" [13] "AO090003000041" "AO090003000083" "AO090003000118" "AO090003000194" [17] "AO090003000436" "AO090003000442" "AO090003000463" "AO090003000500" [21] "AO090003000560" "AO090003000789" "AO090003000829" "AO090003000844" [25] "AO090003000893" "AO090003000929" "AO090003001038" "AO090003001225" [29] "AO090003001227" "AO090003001229" "AO090003001273" "AO090003001336" [33] "AO090003001368" "AO090003001375" "AO090003001419" "AO090003001428" [37] "AO090003001429" "AO090003001430" "AO090003001436" "AO090003001460" [41] "AO090003001538" "AO090003001539" "AO090005000025" "AO090005000047" [45] "AO090005000057" "AO090005000060" "AO090005000067" "AO090005000075" [49] "AO090005000093" "AO090005000096" "AO090005000105" "AO090005000106" [53] "AO090005000118" "AO090005000158" "AO090005000170" "AO090005000307" [57] "AO090005000325" "AO090005000459" "AO090005000464" "AO090005000501" [61] "AO090005000574" "AO090005000612" "AO090005000615" "AO090005000773" [65] "AO090005000968" "AO090005001194" "AO090005001195" "AO090005001316" [69] "AO090005001343" "AO090005001468" "AO090005001475" "AO090005001479" [73] "AO090005001515" "AO090005001642" "AO090009000106" "AO090009000126" [77] "AO090009000171" "AO090009000172" "AO090009000250" "AO090009000284" [81] "AO090009000381" "AO090009000457" "AO090009000471" "AO090009000500" [85] "AO090009000646" "AO090010000093" "AO090010000117" "AO090010000184" [89] "AO090010000206" "AO090010000207" "AO090010000216" "AO090010000369" [93] "AO090010000399" "AO090010000490" "AO090010000610" "AO090010000612" [97] "AO090010000638" "AO090010000644" "AO090010000656" "AO090010000659" [101] "AO090010000664" "AO090010000763" "AO090011000011" "AO090011000041" [105] "AO090011000045" "AO090011000053" "AO090011000092" "AO090011000096" [109] "AO090011000114" "AO090011000163" "AO090011000164" "AO090011000378" [113] "AO090011000420" "AO090011000427" "AO090011000428" "AO090011000446" [117] "AO090011000453" "AO090011000462" "AO090011000493" "AO090011000555" [121] "AO090011000571" "AO090011000609" "AO090011000696" "AO090011000776" [125] "AO090011000817" "AO090011000922" "AO090011000937" "AO090012000031" [129] "AO090012000070" "AO090012000180" "AO090012000183" "AO090012000189" [133] "AO090012000370" "AO090012000482" "AO090012000489" "AO090012000591" [137] "AO090012000671" "AO090012000676" "AO090012000680" "AO090012000692" [141] "AO090012000703" "AO090012000706" "AO090012000713" "AO090012000758" [145] "AO090012000840" "AO090012000878" "AO090020000072" "AO090020000105" [149] "AO090020000157" "AO090020000162" "AO090020000280" "AO090020000291" [153] "AO090020000296" "AO090020000399" "AO090020000416" "AO090020000430" [157] "AO090020000508" "AO090020000535" "AO090020000540" "AO090020000558" [161] "AO090020000580" "AO090020000627" "AO090020000703" "AO090023000109" [165] "AO090023000110" "AO090023000125" "AO090023000144" "AO090023000167" [169] "AO090023000293" "AO090023000298" "AO090023000427" "AO090023000494" [173] "AO090023000708" "AO090023000724" "AO090023000750" "AO090023000759" [177] "AO090023000811" "AO090023000880" "AO090023000900" "AO090026000005" [181] "AO090026000008" "AO090026000037" "AO090026000069" "AO090026000070" [185] "AO090026000071" "AO090026000126" "AO090026000160" "AO090026000181" [189] "AO090026000258" "AO090026000295" "AO090026000355" "AO090026000432" [193] "AO090026000537" "AO090026000547" "AO090026000553" "AO090026000587" [197] "AO090026000592" "AO090026000612" "AO090026000716" "AO090026000726" [201] "AO090026000805" "AO090038000045" "AO090038000046" "AO090038000083" [205] "AO090038000153" "AO090038000255" "AO090038000313" "AO090038000319" [209] "AO090038000375" "AO090102000033" "AO090102000078" "AO090102000131" [213] "AO090102000263" "AO090102000293" "AO090102000461" "AO090102000503" [217] "AO090102000511" "AO090102000528" "AO090102000559" "AO090102000640" [221] "AO090102000650" "AO090103000004" "AO090103000139" "AO090103000153" [225] "AO090103000159" "AO090103000207" "AO090103000306" "AO090103000308" [229] "AO090103000438" "AO090103000442" "AO090113000007" "AO090113000011" [233] "AO090113000089" "AO090113000177" "AO090120000025" "AO090120000058" [237] "AO090120000081" "AO090120000096" "AO090120000152" "AO090120000187" [241] "AO090120000204" "AO090120000272" "AO090120000313" "AO090120000319" [245] "AO090120000328" "AO090120000342" "AO090120000430" "AO090124000050" [249] "AO090124000051" "AO090124000065" "AO090124000066" "AO090124000074" [253] "AO090138000077" "AO090166000064" "AO090166000081" "AO090166000100" [257] "AO090166000101" "AO090166000109" "AO090166000123" "AO090701000104" [261] "AO090701000197" "AO090701000392" "AO090701000589" "AO090701000590" [265] "AO090701000625" "AO090701000789" -------------------------------------------------------------- Number of enriched GO terms: 51 GO terms are: [1] "regulation of mitotic sister chromatid segregation" [2] "cytoskeletal motor activity" [3] "endoplasmic reticulum" [4] "regulation of sister chromatid segregation" [5] "mitotic cell cycle checkpoint signaling" [6] "chromosome segregation" [7] "cytoskeleton" [8] "microtubule motor activity" [9] "cell division" [10] "regulation of chromosome segregation" [11] "negative regulation of mitotic cell cycle" [12] "spindle checkpoint signaling" [13] "negative regulation of mitotic nuclear division" [14] "negative regulation of mitotic metaphase/anaphase transition" [15] "mitotic spindle checkpoint signaling" [16] "negative regulation of metaphase/anaphase transition of cell cycle" [17] "negative regulation of chromosome separation" [18] "negative regulation of mitotic sister chromatid separation" [19] "chromosome separation" [20] "microtubule binding" [21] "cell cycle checkpoint signaling" [22] "mitotic cell cycle" [23] "negative regulation of sister chromatid segregation" [24] "negative regulation of mitotic sister chromatid segregation" [25] "microtubule-based movement" [26] "regulation of chromosome organization" [27] "negative regulation of chromosome segregation" [28] "kinetochore" [29] "negative regulation of cell cycle phase transition" [30] "condensed chromosome, centromeric region" [31] "negative regulation of nuclear division" [32] "negative regulation of mitotic cell cycle phase transition" [33] "microtubule-based process" [34] "mitotic sister chromatid segregation" [35] "regulation of mitotic nuclear division" [36] "regulation of mitotic sister chromatid separation" [37] "regulation of chromosome separation" [38] "negative regulation of chromosome organization" [39] "negative regulation of organelle organization" [40] "tubulin binding" [41] "sister chromatid segregation" [42] "condensed chromosome" [43] "cell cycle" [44] "mitotic sister chromatid separation" [45] "negative regulation of cell cycle process" [46] "mitotic nuclear division" [47] "negative regulation of cell cycle" [48] "metaphase/anaphase transition of mitotic cell cycle" [49] "regulation of mitotic metaphase/anaphase transition" [50] "metaphase/anaphase transition of cell cycle" [51] "regulation of metaphase/anaphase transition of cell cycle" Parent terms retrieved using org.Sc.sgd.db (S. cerevisiae) Biological process parent terms of GO terms are: term GO:0033047 "regulation of mitotic sister chromatid segregation" GO:0051301 "cell division" GO:0031577 "spindle checkpoint signaling" GO:0007059 "chromosome segregation" GO:0071174 "mitotic spindle checkpoint signaling" GO:0045930 "negative regulation of mitotic cell cycle" GO:0007093 "mitotic cell cycle checkpoint signaling" GO:0045839 "negative regulation of mitotic nuclear division" GO:0051983 "regulation of chromosome segregation" GO:0033045 "regulation of sister chromatid segregation" GO:0045841 "negative regulation of mitotic metaphase/anaphase transition" GO:1902100 "negative regulation of metaphase/anaphase transition of cell cycle" GO:1905819 "negative regulation of chromosome separation" GO:2000816 "negative regulation of mitotic sister chromatid separation" GO:0051304 "chromosome separation" GO:0000278 "mitotic cell cycle" GO:0000075 "cell cycle checkpoint signaling" GO:0033046 "negative regulation of sister chromatid segregation" GO:0033048 "negative regulation of mitotic sister chromatid segregation" GO:0007018 "microtubule-based movement" GO:0033044 "regulation of chromosome organization" GO:0051985 "negative regulation of chromosome segregation" GO:1901988 "negative regulation of cell cycle phase transition" GO:0051784 "negative regulation of nuclear division" GO:1901991 "negative regulation of mitotic cell cycle phase transition" GO:0007017 "microtubule-based process" GO:0000070 "mitotic sister chromatid segregation" GO:0007088 "regulation of mitotic nuclear division" GO:2001251 "negative regulation of chromosome organization" GO:1905818 "regulation of chromosome separation" GO:0010965 "regulation of mitotic sister chromatid separation" GO:0010639 "negative regulation of organelle organization" GO:0000819 "sister chromatid segregation" GO:0007049 "cell cycle" GO:0140014 "mitotic nuclear division" GO:0051306 "mitotic sister chromatid separation" GO:0010948 "negative regulation of cell cycle process" GO:0045786 "negative regulation of cell cycle" GO:0044784 "metaphase/anaphase transition of cell cycle" GO:1902099 "regulation of metaphase/anaphase transition of cell cycle" GO:0007091 "metaphase/anaphase transition of mitotic cell cycle" GO:0030071 "regulation of mitotic metaphase/anaphase transition" parentTerm GO:0033047 "regulation of mitotic sister chromatid segregation" GO:0051301 "cell division" GO:0031577 "regulation of mitotic sister chromatid segregation" GO:0007059 "regulation of mitotic sister chromatid segregation" GO:0071174 "regulation of mitotic sister chromatid segregation" GO:0045930 "regulation of mitotic sister chromatid segregation" GO:0007093 "regulation of mitotic sister chromatid segregation" GO:0045839 "negative regulation of mitotic nuclear division" GO:0051983 "regulation of mitotic sister chromatid segregation" GO:0033045 "regulation of mitotic sister chromatid segregation" GO:0045841 "negative regulation of mitotic nuclear division" GO:1902100 "regulation of mitotic sister chromatid segregation" GO:1905819 "regulation of mitotic sister chromatid segregation" GO:2000816 "regulation of mitotic sister chromatid segregation" GO:0051304 "regulation of mitotic sister chromatid segregation" GO:0000278 "regulation of mitotic sister chromatid segregation" GO:0000075 "regulation of mitotic sister chromatid segregation" GO:0033046 "regulation of mitotic sister chromatid segregation" GO:0033048 "regulation of mitotic sister chromatid segregation" GO:0007018 "microtubule-based movement" GO:0033044 "negative regulation of mitotic nuclear division" GO:0051985 "regulation of mitotic sister chromatid segregation" GO:1901988 "regulation of mitotic sister chromatid segregation" GO:0051784 "negative regulation of mitotic nuclear division" GO:1901991 "regulation of mitotic sister chromatid segregation" GO:0007017 "microtubule-based movement" GO:0000070 "regulation of mitotic sister chromatid segregation" GO:0007088 "negative regulation of mitotic nuclear division" GO:2001251 "negative regulation of mitotic nuclear division" GO:1905818 "regulation of mitotic sister chromatid segregation" GO:0010965 "regulation of mitotic sister chromatid segregation" GO:0010639 "negative regulation of mitotic nuclear division" GO:0000819 "regulation of mitotic sister chromatid segregation" GO:0007049 "regulation of mitotic sister chromatid segregation" GO:0140014 "regulation of mitotic sister chromatid segregation" GO:0051306 "regulation of mitotic sister chromatid segregation" GO:0010948 "regulation of mitotic sister chromatid segregation" GO:0045786 "regulation of mitotic sister chromatid segregation" GO:0044784 "regulation of mitotic sister chromatid segregation" GO:1902099 "regulation of mitotic sister chromatid segregation" GO:0007091 "regulation of mitotic sister chromatid segregation" GO:0030071 "regulation of mitotic sister chromatid segregation" Number of Biological process parent terms: cell division 1 microtubule-based movement 2 negative regulation of mitotic nuclear division 7 regulation of mitotic sister chromatid segregation 32 Molecular function parent terms of GO terms are: term parentTerm GO:0003777 "microtubule motor activity" "microtubule motor activity" GO:0003774 "cytoskeletal motor activity" "microtubule motor activity" GO:0008017 "microtubule binding" "microtubule binding" GO:0015631 "tubulin binding" "microtubule binding" Number of Molecular function parent terms: microtubule binding microtubule motor activity 2 2 Cellular component parent terms of GO terms are: term parentTerm GO:0005783 "endoplasmic reticulum" "endoplasmic reticulum" GO:0005856 "cytoskeleton" "cytoskeleton" GO:0000776 "kinetochore" "cytoskeleton" GO:0000779 "condensed chromosome, centromeric region" "cytoskeleton" GO:0000793 "condensed chromosome" "cytoskeleton" Number of Cellular component parent terms: cytoskeleton endoplasmic reticulum 4 1 Number of GO terms for which NO parent term was found: 0 -------------------------------------------------------------- Number of enriched KEGG pathways: 1 KEGG pathways are: [1] "Cell cycle - yeast - Aspergillus oryzae"