{"text_format":"3","workbook":"xls","n_sheets":2,"sheets":["Variant tyes and regions of LT ","Variant tpes and regions of SY"],"read":"whole","date_system":"1900","formulas":"cached_only"}

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["Table S4. SNPs  counts upon mapping the Illumina reads to Papaver Somniferum L genome."]
["1.The number of effects by type and region of variants of LT sample."]
[]
[null,"Type",null,null,"Region"]
[null,"Type (alphabetical order)","Count","Percent","Type (alphabetical order)","Count","Percent"]
[null,"3_prime_UTR_variant",{"v":24977,"d":"24,977"},{"v":0.02545,"d":"2.55%"},"downstream",{"v":206296,"d":"206,296"},{"v":0.21181,"d":"21.18%"}]
[null,"5_prime_UTR_premature_start_codon_gain_variant",{"v":3427,"d":"3,427"},{"v":0.0034899999999999996,"d":"0.35%"},"exon",{"v":169256,"d":"169,256"},{"v":0.17378,"d":"17.38%"}]
[null,"5_prime_UTR_variant",{"v":20731,"d":"20,731"},{"v":0.02113,"d":"2.11%"},"intergenic",{"v":68323,"d":"68,323"},{"v":0.07014999999999999,"d":"7.02%"}]
[null,"downstream_gene_variant",{"v":206296,"d":"206,296"},{"v":0.21024,"d":"21.02%"},"intron",{"v":81876,"d":"81,876"},{"v":0.08406000000000001,"d":"8.41%"}]
[null,"initiator_codon_variant",4,{"v":0,"d":"0%"},"splice_site_acceptor",673,{"v":0.0006900000000000001,"d":"0.07%"}]
[null,"intergenic_region",{"v":68323,"d":"68,323"},{"v":0.06963,"d":"6.96%"},"splice_site_donor",895,{"v":0.00092,"d":"0.09%"}]
[null,"intragenic_variant",{"v":28645,"d":"28,645"},{"v":0.02919,"d":"2.92%"},"splice_site_region",{"v":5319,"d":"5,319"},{"v":0.0054600000000000004,"d":"0.55%"}]
[null,"intron_variant",{"v":86294,"d":"86,294"},{"v":0.08794,"d":"8.79%"},"transcript",{"v":230748,"d":"230,748"},{"v":0.23692,"d":"23.69%"}]
[null,"missense_variant",{"v":44575,"d":"44,575"},{"v":0.04543,"d":"4.54%"},"upstream",{"v":161448,"d":"161,448"},{"v":0.16576000000000002,"d":"16.58%"}]
[null,"non_coding_transcript_exon_variant",{"v":95518,"d":"95,518"},{"v":0.09734,"d":"9.73%"},"UTR_3_prime",{"v":24977,"d":"24,977"},{"v":0.02564,"d":"2.56%"}]
[null,"non_coding_transcript_variant",{"v":202103,"d":"202,103"},{"v":0.20596,"d":"20.60%"},"UTR_5_prime",{"v":24158,"d":"24,158"},{"v":0.0248,"d":"2.48%"}]
[null,"splice_acceptor_variant",673,{"v":0.0006900000000000001,"d":"0.07%"}]
[null,"splice_donor_variant",895,{"v":0.00091,"d":"0.09%"}]
[null,"splice_region_variant",{"v":6104,"d":"6,104"},{"v":0.00622,"d":"0.62%"}]
[null,"start_lost",49,{"v":5e-05,"d":"0.01%"}]
[null,"stop_gained",624,{"v":0.00064,"d":"0.06%"}]
[null,"stop_lost",194,{"v":0.0002,"d":"0.02%"}]
[null,"stop_retained_variant",52,{"v":5e-05,"d":"0.01%"}]
[null,"synonymous_variant",{"v":30323,"d":"30,323"},{"v":0.030899999999999997,"d":"3.09%"}]
[null,"upstream_gene_variant",{"v":161448,"d":"161,448"},{"v":0.16452999999999998,"d":"16.45%"}]

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[]
["2.The number of effects by type and region of  of variants of SY sample."]
[]
[null,"Type",null,null,"Region"]
[null,"Type (alphabetical order)","Count","Percent","Type (alphabetical order)","Count","Percent"]
[null,"3_prime_UTR_variant",{"v":24612,"d":"24,612"},{"v":0.02641,"d":"2.64%"},"downstream",{"v":194247,"d":"194,247"},{"v":0.21,"d":"21%"}]
[null,"5_prime_UTR_premature_start_codon_gain_variant",{"v":3174,"d":"3,174"},{"v":0.0034100000000000003,"d":"0.34%"},"exon",{"v":165580,"d":"165,580"},{"v":0.17901,"d":"17.90%"}]
[null,"5_prime_UTR_variant",{"v":19687,"d":"19,687"},{"v":0.02113,"d":"2.11%"},"intergenic",{"v":64437,"d":"64,437"},{"v":0.06966,"d":"6.97%"}]
[null,"downstream_gene_variant",{"v":194247,"d":"194,247"},{"v":0.20845,"d":"20.85%"},"intron",{"v":74579,"d":"74,579"},{"v":0.08063000000000001,"d":"8.06%"}]
[null,"initiator_codon_variant",4,{"v":0,"d":"0%"},"splice_site_acceptor",675,{"v":0.00073,"d":"0.07%"}]
[null,"intergenic_region",{"v":64437,"d":"64,437"},{"v":0.06915,"d":"6.92%"},"splice_site_donor",858,{"v":0.0009299999999999999,"d":"0.09%"}]
[null,"intragenic_variant",{"v":27635,"d":"27,635"},{"v":0.029660000000000002,"d":"2.97%"},"splice_site_region",{"v":4927,"d":"4,927"},{"v":0.0053300000000000005,"d":"0.53%"}]
[null,"intron_variant",{"v":78626,"d":"78,626"},{"v":0.08438000000000001,"d":"8.44%"},"transcript",{"v":219956,"d":"219,956"},{"v":0.2378,"d":"23.78%"}]
[null,"missense_variant",{"v":43343,"d":"43,343"},{"v":0.046509999999999996,"d":"4.65%"},"upstream",{"v":152248,"d":"152,248"},{"v":0.1646,"d":"16.46%"}]
[null,"non_coding_transcript_exon_variant",{"v":94032,"d":"94,032"},{"v":0.10091,"d":"10.09%"},"UTR_3_prime",{"v":24612,"d":"24,612"},{"v":0.02661,"d":"2.66%"}]
[null,"non_coding_transcript_variant",{"v":192321,"d":"192,321"},{"v":0.20638,"d":"20.64%"},"UTR_5_prime",{"v":22861,"d":"22,861"},{"v":0.02472,"d":"2.47%"}]
[null,"splice_acceptor_variant",675,{"v":0.0007199999999999999,"d":"0.07%"}]
[null,"splice_donor_variant",858,{"v":0.00092,"d":"0.09%"}]
[null,"splice_region_variant",{"v":5724,"d":"5,724"},{"v":0.00614,"d":"0.61%"}]
[null,"start_lost",56,{"v":6e-05,"d":"0.01%"}]
[null,"stop_gained",596,{"v":0.00064,"d":"0.06%"}]
[null,"stop_lost",188,{"v":0.0002,"d":"0.02%"}]
[null,"stop_retained_variant",57,{"v":6e-05,"d":"0.01%"}]
[null,"synonymous_variant",{"v":29342,"d":"29,342"},{"v":0.03149,"d":"3.15%"}]
[null,"upstream_gene_variant",{"v":152248,"d":"152,248"},{"v":0.16338,"d":"16.34%"}]