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["Supplementary Table 1. Information of the 11 bulk brain tumor datasets."]
[null,"Reference","DOI","Data availability",{"$nulls":13},"Data sources"]
[{"$nulls":3},"Transcriptomes","IDH\nmutation","TERT\nmutation","ATRX\nmutation","TP53\nmutation","NF1\nmutation","EGFR amplification","CDKN2A/CDKN2B deletion","PTEN\ndeletion","MGMT methylation","codeletion of 1p and 19q","Chr7 gain/\nchr10 loss","Methylation \nstatus","TCGA subtype"]
["TCGA-LGG","Thorsson V, Gibbs DL, Brown SD et al. The Immune Landscape of Cancer. Immunity 2018; 48: 812-830.e814.","10.1016/j.immuni.2018.03.023","Yes","Yes","Yes","Yes","Yes","Yes","Yes","Yes","Yes","Yes","Yes","Yes","No","Yes","https://dx.doi.org/10.1016/j.immuni.2018.03.023"]
[null,"M C, FP B, TM M et al. Molecular Profiling Reveals Biologically Discrete Subsets and Pathways of Progression in Diffuse Glioma. Cell. 2016 Jan 28;164(3):550-63. doi: 10.1016/j.cell.2015.12.028. 550-563.","10.1016/j.cell.2015.12.028",{"$nulls":14},"https://gdc.cancer.gov/"]
[{"$nulls":17},"http://gliovis.bioinfo.cnio.es/"]
["TCGA-GBM","Thorsson V, Gibbs DL, Brown SD et al. The Immune Landscape of Cancer. Immunity 2018; 48: 812-830.e814.","10.1016/j.immuni.2018.03.023","Yes","Yes","Yes","Yes","Yes","Yes","Yes","Yes","Yes","Yes","Yes","Yes","Yes","Yes","https://dx.doi.org/10.1016/j.immuni.2018.03.023"]
[null,"M C, FP B, TM M et al. Molecular Profiling Reveals Biologically Discrete Subsets and Pathways of Progression in Diffuse Glioma. Cell. 2016 Jan 28;164(3):550-63. doi: 10.1016/j.cell.2015.12.028. 550-563.","10.1016/j.cell.2015.12.028",{"$nulls":14},"https://gdc.cancer.gov/"]
[{"$nulls":17},"http://gliovis.bioinfo.cnio.es/"]
["CGGA-B","Wang Y, Qian T, You G et al. Localizing seizure-susceptible brain regions associated with low-grade gliomas using voxel-based lesion-symptom mapping. Neuro Oncol 2015; 17: 282-288.","10.1093/neuonc/nou130","Yes","Yes","No","No","No","No","No","No","No","Yes","Yes","No","No","No","http://www.cgga.org.cn/"]
["CGGA-C","Bao ZS, Chen HM, Yang MY et al. RNA-seq of 272 gliomas revealed a novel, recurrent PTPRZ1-MET fusion transcript in secondary glioblastomas. Genome Res 2014; 24: 1765-1773.","10.1101/gr.165126.113","Yes","Yes","No","No","No","No","No","No","No","Yes","Yes","No","No","No","http://www.cgga.org.cn/"]
["CGGA-D","Fang S, Liang J, Qian T et al. Anatomic Location of Tumor Predicts the Accuracy of Motor Function Localization in Diffuse Lower-Grade Gliomas Involving the Hand Knob Area. AJNR Am J Neuroradiol 2017; 38: 1990-1997.","10.3174/ajnr.A5342","Yes","Yes","No","No","No","No","No","No","No","Yes","Yes","No","No","Yes","http://www.cgga.org.cn/"]
["PBCA-US","No Publications.","No Publications.","Yes","Yes","No","No","No","No","No","No","No","No","No","No","No","No","https://icgc.org/"]
["GSE16011","Gravendeel LA, Kouwenhoven MC, Gevaert O et al. Intrinsic gene expression profiles of gliomas are a better predictor of survival than histology. Cancer Res 2009; 69: 9065-9072.","10.1158/0008-5472.CAN-09-2307","Yes","Yes","No","No","No","No","Yes","No","No","No","Yes","No","Yes","Yes","https://dx.doi.org/10.1158/0008-5472.CAN-09-2307"]
[{"$nulls":17},"https://www.ncbi.nlm.nih.gov/gds"]
[{"$nulls":17},"http://gliovis.bioinfo.cnio.es/"]
["GSE13041","Lee Y, Scheck AC, Cloughesy TF et al. Gene expression analysis of glioblastomas identifies the major molecular basis for the prognostic benefit of younger age. BMC Med Genomics 2008; 1: 52.","10.1186/1755-8794-1-52","Yes","No","No","No","No","No","No","No","No","No","No","No","Yes","Yes","https://dx.doi.org/10.1186/1755-8794-1-52"]
[{"$nulls":17},"https://www.ncbi.nlm.nih.gov/gds"]
[{"$nulls":17},"http://gliovis.bioinfo.cnio.es/"]
["GSE108474","Gusev Y, Bhuvaneshwar K, Song L et al. The REMBRANDT study, a large collection of genomic data from brain cancer patients. Sci Data 2018; 5: 180158.","10.1038/sdata.2018.158","Yes","No","No","No","No","No","No","No","No","No","No","No","Yes","Yes","https://www.ncbi.nlm.nih.gov/gds"]
[{"$nulls":17},"http://gliovis.bioinfo.cnio.es/"]
["GSE85217","Cavalli FMG, Remke M, Rampasek L et al. Intertumoral Heterogeneity within Medulloblastoma Subgroups. Cancer Cell 2017; 31: 737-754.e736.","10.1016/j.ccell.2017.05.005","Yes","No","No","No","No","No","No","No","No","No","No","No","No","No","https://dx.doi.org/10.1016/j.ccell.2017.05.005"]
[{"$nulls":17},"https://www.ncbi.nlm.nih.gov/gds"]
["E-MTAB-3892","Kamoun A, Idbaih A, Dehais C et al. Integrated multi-omics analysis of oligodendroglial tumours identifies three subgroups of 1p/19q co-deleted gliomas. Nat Commun 2016; 7: 11263.","10.1038/ncomms11263","Yes","Yes","No","No","No","No","No","No","No","No","Yes","No","No","No","https://www.ebi.ac.uk/"]