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["Supplementary Table 2. Information on the 16 single-cell datasets. "]
["GEO \naccession","Sequencing technique","Cancer type","Cell types","Cell numbers","Reference","DOI"]
["GSE70630","Smart-seq2","Oligodendroglioma","Cancer cells and other non-malignant cells",{"v":4347,"d":"4,347"},"Tirosh I, Venteicher AS, Hebert C, et al. Single-cell RNA-seq supports a developmental hierarchy in human oligodendroglioma. Nature. 2016;539(7628):309-313.","10.1038/nature20123"]
["GSE89567","Smart-seq2","Astrocytoma","Immune cells, cancer cells and other non-malignant cells",{"v":6341,"d":"6,341"},"Venteicher AS, Tirosh I, Hebert C, et al. Decoupling genetics, lineages, and microenvironment in IDH-mutant gliomas by single-cell RNA-seq. Science. 2017;355(6332):eaai8478.","10.1126/science.aai8478"]
["GSE102130","Smart-seq2","Diffuse midline gliomas","Immune cells, cancer cells and other non-malignant cells",{"v":4058,"d":"4,058"},"MG F, Id O, I T et al. Developmental and oncogenic programs in H3K27M gliomas dissected by single-cell RNA-seq. Science 2018; 360: 331-335.","10.1126/science.aao4750"]
["GSE103322","Smart-seq2","Head and neck squamous cell carcinoma","Immune cells, cancer cells and other non-malignant cells",{"v":5902,"d":"5,902"},"Puram SV, Tirosh I, Parikh AS, et al. Single-Cell Transcriptomic Analysis of Primary and Metastatic Tumor Ecosystems in Head and Neck Cancer. Cell. 2017;171(7):1611-1624.","10.1016/j.cell.2017.10.044"]
["GSE108989","Smart-seq2","Colorectal cancer","T cells",{"v":11138,"d":"11,138"},"Zhang, Lei et al.Lineage tracking reveals dynamic relationships of T cells in colorectal cancer. Nature vol. 564,7735 (2018): 268-272.","10.1038/s41586-018-0694-x"]
["GSE98638","Smart-seq2","Colorectal cancer peripheral blood mononuclear cell","T cells",{"v":5063,"d":"5,063"},"Zhang L, Yu X, Zheng L, et al. Lineage tracking reveals dynamic relationships of T cells in colorectal cancer. Nature. 2018;564(7735):268-272.","10.1016/j.cell.2017.05.035"]
["GSE146771","Smart-seq2","Colon cancer","Immune cells, cancer cells and and other non-malignant cells",{"v":10468,"d":"10,468"},"Zhang L, Li Z, Skrzypczynska KM, et al. Single-Cell Analyses Inform Mechanisms of Myeloid-Targeted Therapies in Colon Cancer. Cell. 2020;181(2):442-459.","10.1016/j.cell.2020.03.048"]
["GSE99254","Smart-seq2","Lung cancer","T cells",{"v":12346,"d":"12,346"},"Guo X, Zhang Y, Zheng L, et al. Global characterization of T cells in non-small-cell lung cancer by single-cell sequencing. Nat Med. 2018;24(7):978-985.","10.1038/s41591-018-0045-3"]
["GSE115978","Smart-seq2","Melanoma","Immune cells, cancer cells and other non-malignant cells",{"v":7186,"d":"7,186"},"Jerby-Arnon L, Shah P, Cuoco MS, et al. A Cancer Cell Program Promotes T Cell Exclusion and Resistance to Checkpoint Blockade. Cell. 2018;175(4):984-997.","10.1016/j.cell.2018.09.006"]
["GSE72056","Smart-seq2","Melanoma","Immune cells, cancer cells and other non-malignant cells",{"v":4513,"d":"4,513"},"Tirosh I, Izar B, Prakadan SM, et al. Dissecting the multicellular ecosystem of metastatic melanoma by single-cell RNA-seq. Science. 2016;352(6282):189-196.","10.1126/science.aad0501"]
["GSE94820","Smart-seq2","Peripheral blood mononuclear cell","Dendritic cells",{"v":2384,"d":"2,384"},"Villani AC, Satija R, Reynolds G, et al. Single-cell RNA-seq reveals new types of human blood dendritic cells, monocytes, and progenitors. Science. 2017;356(6335):eaah4573.","10.1126/science.aah4573"]
["GSE120575","Smart-seq2","Melanoma","T cells",{"v":16292,"d":"16,292"},"Sade-Feldman M, Yizhak K, Bjorgaard SL, et al. Defining T Cell States Associated with Response to Checkpoint Immunotherapy in Melanoma. Cell. 2018;175(4):998-1013.e20.","10.1016/j.cell.2018.10.038"]
["GSE89232","Smart-seq2","Peripheral blood mononuclear cell","Dendritic cells",957,"Breton G, Zheng S, Valieris R, Tojal da Silva I, Satija R, Nussenzweig MC. Human dendritic cells (DCs) are derived from distinct circulating precursors that are precommitted to become CD1c+ or CD141+ DCs. J Exp Med. 2016;213(13):2861-2870.","10.1084/jem.20161135"]
["GSE70580","Smart-seq2","Human tonsils","Innate lymphoid cells",648,"Björklund ÅK, Forkel M, Picelli S, et al. The heterogeneity of human CD127(+) innate lymphoid cells revealed by single-cell RNA sequencing. Nat Immunol. 2016;17(4):451-460.","10.1038/ni.3368"]
["GSE146026","Smart-seq2","Ovarian cancer","Malignant cells",{"v":1297,"d":"1,297"},"Izar B, Tirosh I, Stover EH, et al. A single-cell landscape of high-grade serous ovarian cancer. Nat Med. 2020;26(8):1271-1279.","10.1038/s41591-020-0926-0"]
["GSE136732","Smart-seq2","Peripheral blood mononuclear cell","Mononuclear cells",221,"Dutertre CA, Becht E, Irac SE, et al. Single-Cell Analysis of Human Mononuclear Phagocytes Reveals Subset-Defining Markers and Identifies Circulating Inflammatory Dendritic Cells. Immunity. 2019;51(3):573-589.e8.","10.1016/j.immuni.2019.08.008"]