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["Additional File 3 The detail statistics for the quality of sequencing data of all (52) samples used for de novo assembly of liver transcriptome. Samples in bold were used further in this study for quantitative analysis of lncRNA."]
[]
[]
["Raw reads: total amount of reads of raw data, each four lines taken as one unit. For paired-end sequencing, it equals the amount of read1 and read2.\nClean reads: total amount of reads of clean data, each four lines taken as one unit. For paired-end sequencing, it means the amount of read1 and read2.\nRaw bases: (Raw reads) * (sequence length), calculating in G. For paired-end sequencing sequencing length equals 150.\nClean bases: (Clean reads) * (sequence length), calculating in G. For paired-end sequencing, sequencing length equals 150.\nEffective Rate(%): (Clean reads/Raw reads)*100%\nError rate: base error rate\nQ20, Q30: (Base count of Phred value > 20 or 30) / (Total base count)\nGC content: (G & C base count) / (Total base count)"]
{"$rows_empty":9}
["Sample name","Raw\nReads","Clean\nReads","Raw\nBase(G)","Clean\nBase(G)","Effective\nRate(%)","Error\nRate(%)","Q20(%)","Q30(%)","GC\nContent(%)","SRA accession","Biosample accession"]
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["INH_1d_W9_19",53708949,53234768,"16.1","16.0","99.12","0.03","97.47","93.38","49.58","SRR12349826","SAMN15676518"]
["INH_6d_W1_71",54133206,52978117,"16.2","15.9","97.87","0.03","97.44","92.93","49.38","SRR12349815","SAMN15676519"]
["INH_6d_W2_72",54199807,53657258,"16.3","16.1","99.00","0.03","97.29","92.74","49.19","SRR12349804","SAMN15676520"]
["INH_6d_W6_76",56531923,56022290,"17.0","16.8","99.10","0.03","97.41","92.87","48.80","SRR12349793","SAMN15676521"]
["INH_8d_W10_130",50797688,50415715,"15.2","15.1","99.25","0.03","97.22","92.59","49.99","SRR12349790","SAMN15676522"]
["INH_8d_W3_123",51364290,50822229,"15.4","15.2","98.94","0.03","97.68","93.47","49.30","SRR12349789","SAMN15676523"]
["INH_8d_W9_129",59156313,58479918,"17.7","17.5","98.86","0.03","97.50","93.08","49.22","SRR12349788","SAMN15676524"]
["INHMC_1d_W2_32",54977899,54047498,"16.5","16.2","98.31","0.03","97.37","92.77","49.77","SRR12349787","SAMN15676525"]
["INHMC_1d_W3_33",57712754,57169705,"17.3","17.2","99.06","0.03","96.48","90.98","49.23","SRR12349836","SAMN15676526"]
["INHMC_1d_W8_38",54744472,54128624,"16.4","16.2","98.88","0.03","97.41","93.00","49.66","SRR12349835","SAMN15676527"]
["INHMC_9d_W4_144",51782840,50685125,"15.5","15.2","97.88","0.03","97.86","93.81","47.80","SRR12349834","SAMN15676528"]
["INHMC_9d_W7_147",52195676,50839139,"15.7","15.3","97.40","0.03","96.74","91.73","48.48","SRR12349833","SAMN15676529"]
["INHMC_9d_W9_149",55565652,55083955,"16.7","16.5","99.13","0.03","97.47","92.88","47.23","SRR12349832","SAMN15676530"]
["MC2_1d_W3_43",70885836,70023698,"21.3","21.0","98.78","0.03","97.45","93.33","50.50","SRR12349831","SAMN15676531"]
["MC2_1d_W6_46",65073865,64426735,"19.5","19.3","99.01","0.03","97.14","92.65","49.95","SRR12349830","SAMN15676532"]
["MC2_1d_W7_47",55086455,52971161,"16.5","15.9","96.16","0.03","97.01","92.44","50.05","SRR12349829","SAMN15676533"]
["MC2_6d_W10_110",54391632,53652794,"16.3","16.1","98.64","0.03","96.87","92.19","48.80","SRR12349828","SAMN15676534"]
["MC2_6d_W2_102",56749885,54917112,"17.0","16.5","96.77","0.03","97.32","93.00","47.75","SRR12349827","SAMN15676535"]
["MC2_6d_W8_108",57518842,57022724,"17.3","17.1","99.14","0.03","97.44","93.05","49.42","SRR12349825","SAMN15676536"]
["MC2_9d_W6_166",56983386,56326270,"17.1","16.9","98.85","0.03","96.85","91.78","49.96","SRR12349824","SAMN15676537"]
["MC2_9d_W7_167",53121625,51942679,"15.9","15.6","97.78","0.03","97.43","93.04","47.80","SRR12349823","SAMN15676538"]
["MC2_9d_W8_168",56723373,55387839,"17.0","16.6","97.65","0.03","97.68","93.82","47.77","SRR12349822","SAMN15676539"]
["MCMIM_6d_W5_95",54543026,52298015,"16.4","15.7","95.88","0.03","97.69","93.52","47.84","SRR12349821","SAMN15676540"]
["MCMIM_6d_W6_96",55145307,54599682,"16.5","16.4","99.01","0.03","96.85","92.24","48.73","SRR12349820","SAMN15676541"]
["MCMIM_6d_W9_99",53283283,52240207,"16.0","15.7","98.04","0.03","97.08","92.66","48.77","SRR12349819","SAMN15676542"]
["MCMIM_9d_W1_151",58603714,57827631,"17.6","17.3","98.68","0.03","96.75","91.58","48.63","SRR12349818","SAMN15676543"]
["MCMIM_9d_W6_156",58532663,57540277,"17.6","17.3","98.30","0.03","96.97","92.27","48.28","SRR12349817","SAMN15676544"]
["MCMIM_9d_W8_158",68214499,66909578,"20.5","20.1","98.09","0.03","97.70","93.55","47.74","SRR12349816","SAMN15676545"]
["MIM_1d_W10_30",53740242,52792151,"16.1","15.8","98.24","0.03","97.72","93.61","49.02","SRR12349814","SAMN15676546"]
["MIM_1d_W4_24",50988928,50497674,"15.3","15.1","99.04","0.03","97.32","92.99","50.38","SRR12349813","SAMN15676547"]
["MIM_1d_W8_28",54531192,53815882,"16.4","16.1","98.69","0.03","97.35","93.10","49.62","SRR12349812","SAMN15676548"]
["MIM_6d_W1_81",63057361,62378972,"18.9","18.7","98.92","0.03","97.48","93.38","49.08","SRR12349811","SAMN15676549"]
["MIM_6d_W3_83",53677782,52770363,"16.1","15.8","98.31","0.03","97.06","92.16","48.93","SRR12349810","SAMN15676550"]
["MIM_6d_W5_85",53686812,52789866,"16.1","15.8","98.33","0.03","97.25","92.48","49.06","SRR12349809","SAMN15676551"]
["MIM_8d_W10_140",52521171,51884159,"15.8","15.6","98.79","0.03","97.72","93.55","49.22","SRR12349808","SAMN15676552"]
["MIM_8d_W2_132",57615718,57072064,"17.3","17.1","99.06","0.03","97.22","92.47","48.78","SRR12349807","SAMN15676553"]
["MIM_8d_W7_137",52978049,52386975,"15.9","15.7","98.88","0.03","97.20","92.86","49.30","SRR12349806","SAMN15676554"]
["MIS_1d_W10_10",54395273,53354967,"16.3","16.0","98.09","0.03","97.68","93.79","49.12","SRR12349805","SAMN15676555"]
["MIS_1d_W2_2",53534864,52601563,"16.1","15.8","98.26","0.03","97.60","93.64","49.38","SRR12349803","SAMN15676556"]
["MIS_1d_W3_3",53346623,52663832,"16.0","15.8","98.72","0.03","97.70","93.62","49.10","SRR12349802","SAMN15676557"]
["MIS_6d_W3_63",52384150,51635323,"15.7","15.5","98.57","0.03","97.53","93.34","50.05","SRR12349801","SAMN15676558"]
["MIS_6d_W4_64",51786914,50705242,"15.5","15.2","97.91","0.03","97.20","92.87","49.30","SRR12349800","SAMN15676559"]
["MIS_6d_W5_65",51723223,50587623,"15.5","15.2","97.80","0.03","97.35","92.70","48.77","SRR12349799","SAMN15676560"]
["MIS_8d_W4_114",54295383,53653472,"16.3","16.1","98.82","0.03","97.50","93.16","49.02","SRR12349798","SAMN15676561"]
["MIS_8d_W8_118",56845342,56245187,"17.1","16.9","98.94","0.03","97.56","93.53","49.09","SRR12349797","SAMN15676562"]
["MIS_8d_W9_119",62892656,61861006,"18.9","18.6","98.36","0.03","97.42","93.30","49.52","SRR12349796","SAMN15676563"]
["PBS_1d_W2_52",53510481,52519848,"16.1","15.8","98.15","0.03","97.53","93.47","50.03","SRR12349795","SAMN15676564"]
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["PBS_1d_W8_58",51891967,50901230,"15.6","15.3","98.09","0.03","97.49","93.30","48.90","SRR12349792","SAMN15676566"]
["PBS_1d_W9_59",51748239,50884809,"15.5","15.3","98.33","0.03","97.45","93.02","48.71","SRR12349791","SAMN15676567"]