{"text_format":"3","workbook":"xlsx","n_sheets":11,"sheets":["Supplementary Table 1","Supplementary Table 2","Supplementray Table 3","Supplementary Table 4","Supplementary Table 5","Supplementary Table 6","Supplementray Table 7","Supplementary Table 8","Supplementary Table 9","Supplementary Table 10","Supplementary Table 11"],"not_rendered":{"defined_names":7},"read":"whole","date_system":"1900"}

{"sheet":"Supplementary Table 1","index":0,"n_rows":95,"n_cols":3,"rows_kept":95,"merged":[[0,0,0,2]]}
["Supplementary Table 1： The list of UBS93 genes"]
["SYMBOL","ENSEMBL","ENTREZID"]
["AARD","ENSG00000205002",441376]
["AGR2","ENSG00000106541",10551]
["AGR3","ENSG00000173467",155465]
["ANKRD30A","ENSG00000148513",91074]
["AP1M2","ENSG00000129354",10053]
["AZGP1","ENSG00000160862",563]
["CALML5","ENSG00000178372",51806]
["CDC42EP1","ENSG00000128283",11135]
["CDH1","ENSG00000039068",999]
["CKB","ENSG00000166165",1152]
["CLDN3","ENSG00000165215",1365]
["CLDN4","ENSG00000189143",1364]
["CLDN7","ENSG00000181885",1366]
["CLEC3A","ENSG00000166509",10143]
["CLU","ENSG00000120885",1191]
["CP","ENSG00000047457",1356]
["CRABP1","ENSG00000166426",1381]
["CRABP2","ENSG00000143320",1382]
["CRACR2B","ENSG00000177685",283229]
["CRNDE","ENSG00000245694",643911]
["CRYAB","ENSG00000109846",1410]
["DSCAM-AS1","ENSG00000235123",100506492]
["DSP","ENSG00000096696",1832]
["EFHD1","ENSG00000115468",80303]
["EFNA1","ENSG00000169242",1942]
["EHF","ENSG00000135373",26298]
["ELF3","ENSG00000163435",1999]
["EPCAM","ENSG00000119888",4072]
["ERBB2","ENSG00000141736",2064]
["FDCSP","ENSG00000181617",260436]
["FHL2","ENSG00000115641",2274]
["FXYD3","ENSG00000089356",5349]
["GABRP","ENSG00000094755",2568]
["GDF15","ENSG00000130513",9518]
["GRB7","ENSG00000141738",2886]
["KRT14","ENSG00000186847",3861]
["KRT15","ENSG00000171346",3866]
["KRT17","ENSG00000128422",3872]
["KRT18","ENSG00000111057",3875]
["KRT19","ENSG00000171345",3880]
["KRT23","ENSG00000108244",25984]
["KRT7","ENSG00000135480",3855]
["KRT8","ENSG00000170421",3856]
["KRT81","ENSG00000205426",3887]
["KRTCAP3","ENSG00000157992",200634]
["LRRC26","ENSG00000184709",389816]
["LTF","ENSG00000012223",4057]
["MAL2","ENSG00000147676",114569]
["MGP","ENSG00000111341",4256]
["MGST1","ENSG00000008394",4257]
["MIEN1","ENSG00000141741",84299]
["MLPH","ENSG00000115648",79083]
["MMP7","ENSG00000137673",4316]
["MUC1","ENSG00000185499",4582]
["MUCL1","ENSG00000172551",118430]
["NQO1","ENSG00000181019",1728]
["PDZK1IP1","ENSG00000162366",10158]
["PERP","ENSG00000112378",64065]
["PFN2","ENSG00000070087",5217]
["PIGR","ENSG00000162896",5284]
["PIP","ENSG00000159763",5304]
["PLPP2","ENSG00000141934",8612]
["PPP1R1B","ENSG00000131771",84152]
["PRSS8","ENSG00000052344",5652]
["PTHLH","ENSG00000087494",5744]
["PTPRF","ENSG00000142949",5792]
["RAB25","ENSG00000132698",57111]
["RARRES1","ENSG00000118849",5918]
["S100A14","ENSG00000189334",57402]
["S100A16","ENSG00000188643",140576]
["S100A7","ENSG00000143556",6278]
["S100P","ENSG00000163993",6286]
["SAA1","ENSG00000173432",6288]
["SCGB1D2","ENSG00000124935",10647]
["SCGB2A2","ENSG00000110484",4250]
["SERINC2","ENSG00000168528",347735]
["SFN","ENSG00000175793",2810]
["SLC39A6","ENSG00000141424",25800]
["SLPI","ENSG00000124107",6590]
["SMIM22","ENSG00000267795",440335]
["SPDEF","ENSG00000124664",25803]
["SPINT1","ENSG00000166145",6692]
["SPINT2","ENSG00000167642",10653]
["STC2","ENSG00000113739",8614]
["TACSTD2","ENSG00000184292",4070]
["TFAP2A","ENSG00000137203",7020]
["TFF1","ENSG00000160182",7031]
["TFF3","ENSG00000160180",7033]
["TM4SF1","ENSG00000169908",4071]
["TPD52L1","ENSG00000111907",7164]
["WFDC2","ENSG00000101443",10406]
["XBP1","ENSG00000100219",7494]
["ZG16B","ENSG00000162078",124220]

{"sheet":"Supplementary Table 2","index":1,"n_rows":49,"n_cols":4,"rows_kept":49,"merged":[[0,0,0,3]]}
["Supplementary Table 2: Meta-data of the assembled bulk RNA-seq dataset used for evaluation "]
["Cell line","Run accession","Subtype","GEO ID"]
["MDAMB468","SRR21224413","Basal-like","GSE212143"]
["HCC38","SRR21224419","Basal-like","GSE212143"]
["HCC1954","SRR21224420","Basal-like","GSE212143"]
["HCC1937","SRR21224421","Basal-like","GSE212143"]
["BT20","SRR21224424","Basal-like","GSE212143"]
["MDAMB436","SRR21224415","Claudin-low","GSE212143"]
["MDAMB231","SRR21224416","Claudin-low","GSE212143"]
["HS578T","SRR21224418","Claudin-low","GSE212143"]
["MDAMB453","SRR21224414","HER2-amp","GSE212143"]
["BT474","SRR21224423","HER2-amp","GSE212143"]
["AU565","SRR21224425","HER2-amp","GSE212143"]
["ZR751","SRR21224411","Luminal","GSE212143"]
["T47D","SRR21224412","Luminal","GSE212143"]
["MCF7","SRR21224417","Luminal","GSE212143"]
["HCC1500","SRR21224422","Luminal","GSE212143"]
["HCC1143","SRR925702","Basal-like","GSE48213"]
["HCC1569","SRR925706","Basal-like","GSE48213"]
["HCC1599","SRR925707","Basal-like","GSE48213"]
["HCC1806","SRR925708","Basal-like","GSE48213"]
["HCC70","SRR925715","Basal-like","GSE48213"]
["JIMT1","SRR925717","Basal-like","GSE48213"]
["BT549","SRR925697","Claudin-low","GSE48213"]
["HCC1395","SRR925703","Claudin-low","GSE48213"]
["EFM192A","SRR925699","HER2-amp","GSE48213"]
["HCC1419","SRR925704","HER2-amp","GSE48213"]
["HCC202","SRR925711","HER2-amp","GSE48213"]
["MDAMB175VII","SRR925725","HER2-amp","GSE48213"]
["MDAMB361","SRR925727","HER2-amp","GSE48213"]
["SKBR3","SRR925729","HER2-amp","GSE48213"]
["ZR7530","SRR925741","HER2-amp","GSE48213"]
["HCC2218","SRR934633","HER2-amp","GSE48213"]
["UACC893","SRR934645","HER2-amp","GSE48213"]
["BT483","SRR925696","Luminal","GSE48213"]
["CAMA1","SRR925698","Luminal","GSE48213"]
["HCC1428","SRR925705","Luminal","GSE48213"]
["MDAMB134VI","SRR925724","Luminal","GSE48213"]
["UACC812","SRR934643","Luminal","GSE48213"]
["HCC2157","SRR19170149","Basal-like","GSE73526"]
["CAL851","SRR2532326","Basal-like","GSE73526"]
["HCC1187","SRR2532335","Basal-like","GSE73526"]
["HDQP1","SRR2532353","Basal-like","GSE73526"]
["CAL120","SRR2532323","Claudin-low","GSE73526"]
["CAL51","SRR2532325","Claudin-low","GSE73526"]
["MDAMB157","SRR2532364","Claudin-low","GSE73526"]
["MDAMB415","SRR2532369","HER2-amp","GSE73526"]
["EFM19","SRR2532329","Luminal","GSE73526"]
["KPL1","SRR2532356","Luminal","GSE73526"]

{"sheet":"Supplementray Table 3","index":2,"n_rows":32,"n_cols":3,"rows_kept":32,"merged":[[0,0,0,2]]}
["Supplementary Table 3: Meta-data of the assembled  scRNA-seq dataset used for evaluation \t\t\t"]
["Cell line","Subtype","GEO ID"]
["HCC1187","Basal-like","GSE173634"]
["HCC1937","Basal-like","GSE173634"]
["HCC38","Basal-like","GSE173634"]
["HCC1143","Basal-like","GSE173634"]
["BT20","Basal-like","GSE173634"]
["HDQP1","Basal-like","GSE173634"]
["HCC70","Basal-like","GSE173634"]
["JIMT1","Basal-like","GSE173634"]
["MDAMB468","Basal-like","GSE173634"]
["CAL851","Basal-like","GSE173634"]
["HCC1954","Basal-like","GSE173634"]
["BT549","Claudin-low","GSE173634"]
["HS578T","Claudin-low","GSE173634"]
["MDAMB436","Claudin-low","GSE173634"]
["CAL51","Claudin-low","GSE173634"]
["AU565","HER2-amp","GSE173634"]
["MDAMB415","HER2-amp","GSE173634"]
["MDAMB453","HER2-amp","GSE173634"]
["BT474","HER2-amp","GSE173634"]
["MDAMB361","HER2-amp","GSE173634"]
["MCF7","Luminal","GSE173634"]
["KPL1","Luminal","GSE173634"]
["ZR751","Luminal","GSE173634"]
["T47D","Luminal","GSE173634"]
["EFM19","Luminal","GSE173634"]
["HCC1500","Luminal","GSE173634"]
["CAMA1","Luminal","GSE173634"]
["BT483","Luminal","GSE173634"]
["HCC1806","Basal-like","GSE202771"]
["MDAMB231","Claudin-low","GSE202771"]

{"sheet":"Supplementary Table 4","index":3,"n_rows":29,"n_cols":3,"rows_kept":29,"merged":[[0,0,0,2]]}
["Supplementary Table 4: UBS93 subtyping results of mouse bulk RNA-seq samples"]
["Sample ID","Subtype","UBS93 subtype"]
["SRR12569556","Basal-like","Basal-like"]
["SRR12569557","Basal-like","Basal-like"]
["SRR12569563","Basal-like","Basal-like"]
["SRR12569564","Basal-like","Basal-like"]
["SRR12569565","Basal-like","Basal-like"]
["SRR12569558","Claudin-low","Claudin-low"]
["SRR12569559","Claudin-low","Claudin-low"]
["SRR12569560","Claudin-low","Claudin-low"]
["SRR12569561","Claudin-low","Claudin-low"]
["SRR12569562","Claudin-low","Claudin-low"]
["SRR8285943","Claudin-low","Claudin-low"]
["SRR8285944","Claudin-low","Claudin-low"]
["SRR8285978","Claudin-low","Claudin-low"]
["SRR8285984","Claudin-low","Claudin-low"]
["SRR8285987","Claudin-low","Claudin-low"]
["SRR8285988","Claudin-low","Claudin-low"]
["SRR8285991","Claudin-low","Claudin-low"]
["SRR8285992","Claudin-low","Claudin-low"]
["SRR8285993","Claudin-low","Claudin-low"]
["SRR8285994","Claudin-low","Claudin-low"]
["SRR8285998","Claudin-low","Claudin-low"]
["SRR8286051","Claudin-low","Claudin-low"]
["SRR8286059","Claudin-low","Claudin-low"]
["SRR8286096","Claudin-low","Claudin-low"]
["SRR8286097","Claudin-low","Claudin-low"]
["SRR8286098","Claudin-low","Claudin-low"]
["SRR8286128","Claudin-low","Claudin-low"]

{"sheet":"Supplementary Table 5","index":4,"n_rows":29,"n_cols":3,"rows_kept":29,"merged":[[0,0,0,2]]}
["Supplementary Table 5: The genefu subtyping results of mouse bulk RNA-seq samples"]
["Sample ID","Subtype","genefu subtype"]
["SRR12569556","Basal-like","Claudin-low"]
["SRR12569557","Basal-like","Claudin-low"]
["SRR12569563","Basal-like","Claudin-low"]
["SRR12569564","Basal-like","Claudin-low"]
["SRR12569565","Basal-like","Claudin-low"]
["SRR12569558","Claudin-low","Claudin-low"]
["SRR12569559","Claudin-low","Claudin-low"]
["SRR12569560","Claudin-low","Claudin-low"]
["SRR12569561","Claudin-low","Claudin-low"]
["SRR12569562","Claudin-low","Claudin-low"]
["SRR8285943","Claudin-low","Claudin-low"]
["SRR8285944","Claudin-low","Claudin-low"]
["SRR8285978","Claudin-low","Claudin-low"]
["SRR8285984","Claudin-low","Claudin-low"]
["SRR8285987","Claudin-low","Claudin-low"]
["SRR8285988","Claudin-low","Claudin-low"]
["SRR8285991","Claudin-low","Claudin-low"]
["SRR8285992","Claudin-low","Claudin-low"]
["SRR8285993","Claudin-low","Claudin-low"]
["SRR8285994","Claudin-low","Claudin-low"]
["SRR8285998","Claudin-low","Claudin-low"]
["SRR8286051","Claudin-low","Claudin-low"]
["SRR8286059","Claudin-low","Claudin-low"]
["SRR8286096","Claudin-low","Claudin-low"]
["SRR8286097","Claudin-low","Claudin-low"]
["SRR8286098","Claudin-low","Claudin-low"]
["SRR8286128","Claudin-low","Claudin-low"]

{"sheet":"Supplementary Table 6","index":5,"n_rows":132,"n_cols":6,"rows_kept":132,"merged":[[0,0,0,5]]}
["Supplementary Table 6: Differential gene expression  analysis  result (Claudin-low vs Basal-like cancer cells,  HDQP1 cell line, GSE173634 dataset)"]
["ENSEMBL","SYMBOL","p-value","log2FC","p-adjust","direction"]
["ENSG00000153292","ADGRF1",{"v":3.05928318584696e-13,"d":"3.06E-13"},-6.99614967090544,{"v":1.24592367026803E-8,"d":"1.25E-08"},"down"]
["ENSG00000184254","ALDH1A3",{"v":3.69066836283442e-14,"d":"3.69E-14"},-2.81382666624613,{"v":1.50306159744794e-09,"d":"1.50E-09"},"down"]
["ENSG00000138772","ANXA3",{"v":5.94666756886308e-11,"d":"5.95E-11"},-2.40968318278407,{"v":2.42183983409518e-06,"d":"2.42E-06"},"down"]
["ENSG00000129354","AP1M2",{"v":2.81500023981643e-11,"d":"2.82E-11"},-4.97545661224751,{"v":1.14643699766764e-06,"d":"1.15E-06"},"down"]
["ENSG00000109321","AREG",{"v":1.69073744039003E-7,"d":"1.69E-07"},-3.78988167674705,0.00688569729973246,"down"]
["ENSG00000111348","ARHGDIB",{"v":7.97432260513089e-10,"d":"7.97E-10"},-2.81491794171333,{"v":3.24762262416561e-05,"d":"3.25E-05"},"down"]
["ENSG00000006453","BAIAP2L1",{"v":2.62067164485015e-07,"d":"2.62E-07"},-2.92384234795135,0.0106729473408167,"down"]
["ENSG00000167644","C19orf33",{"v":5.17727123554019e-11,"d":"5.18E-11"},-1.90957729651592,{"v":2.1084954833861e-06,"d":"2.11E-06"},"down"]
["ENSG00000104327","CALB1",{"v":5.34144059017408e-13,"d":"5.34E-13"},-3.2681605369418,{"v":2.1753550947543e-08,"d":"2.18E-08"},"down"]
["ENSG00000178372","CALML5",{"v":1.62255234628552E-10,"d":"1.62E-10"},-3.19175410371153,{"v":6.60800668548243e-06,"d":"6.61E-06"},"down"]
["ENSG00000105141","CASP14",{"v":2.35162944776677E-7,"d":"2.35E-07"},-4.90747286986426,0.00957724608897494,"down"]
["ENSG00000189143","CLDN4",{"v":5.77055849602486e-09,"d":"5.77E-09"},-3.19362762496923,2.35011765309108E-4,"down"]
["ENSG00000181885","CLDN7",{"v":6.1043276742058e-16,"d":"6.10E-16"},-4.18184532044516,{"v":2.48604848859706e-11,"d":"2.49E-11"},"down"]
["ENSG00000143162","CREG1",{"v":4.60507908116619e-07,"d":"4.61E-07"},-2.17770311699122,0.0187546450659574,"down"]
["ENSG00000160213","CSTB",{"v":1.92126336703329e-11,"d":"1.92E-11"},-1.44889776249407,{"v":7.82453718857979E-7,"d":"7.82E-07"},"down"]
["ENSG00000154639","CXADR",{"v":3.95984679688488e-07,"d":"3.96E-07"},-1.73377194115379,0.0161268720649934,"down"]
["ENSG00000096696","DSP",{"v":8.33627368815544e-10,"d":"8.34E-10"},-4.67908197200472,{"v":3.39503082223819e-05,"d":"3.40E-05"},"down"]
["ENSG00000163435","ELF3",{"v":2.88550105460299e-08,"d":"2.89E-08"},-6.70324455843505,0.00117514915949761,"down"]
["ENSG00000119888","EPCAM",{"v":4.12349945750632e-13,"d":"4.12E-13"},-3.78169596604214,{"v":1.67933638906402e-08,"d":"1.68E-08"},"down"]
["ENSG00000092820","EZR",{"v":3.51192715514747e-07,"d":"3.51E-07"},-0.942768344854752,0.0143026745320536,"down"]
["ENSG00000117525","F3",{"v":1.65068528780755e-07,"d":"1.65E-07"},-1.87224442700543,0.00672258090312502,"down"]
["ENSG00000196937","FAM3C",{"v":6.58859776595571e-07,"d":"6.59E-07"},-1.583685958081,0.0268327232616312,"down"]
["ENSG00000180921","FAM83H",{"v":5.92420006024599e-07,"d":"5.92E-07"},-3.1181166644253,0.0241268971653578,"down"]
["ENSG00000089356","FXYD3",{"v":3.31146370619964e-08,"d":"3.31E-08"},-3.87928561621229,1.34862670898687E-3,"down"]
["ENSG00000188910","GJB3",{"v":5.16656832873868e-07,"d":"5.17E-07"},-5.53673739652115,0.0210413661756211,"down"]
["ENSG00000138271","GPR87",{"v":5.88045593729383e-09,"d":"5.88E-09"},-6.51349717527654,0.000239487448502228,"down"]
["ENSG00000134709","HOOK1",{"v":7.89534729535914e-07,"d":"7.90E-07"},-2.87140605506011,0.0321545913950796,"down"]
["ENSG00000095066","HOOK2",{"v":6.74892027076263e-07,"d":"6.75E-07"},-1.8578139934714,0.0274856526947079,"down"]
["ENSG00000268621","IGFL2-AS1",{"v":3.17438767444174e-09,"d":"3.17E-09"},-4.33120181095532,1.29280112429314E-4,"down"]
["ENSG00000016402","IL20RA",{"v":4.58809961260885e-07,"d":"4.59E-07"},-3.18051872742941,0.0186854944823108,"down"]
["ENSG00000008517","IL32",{"v":5.80804311409784e-07,"d":"5.81E-07"},-2.3630775564293,0.0236538363864749,"down"]
["ENSG00000173801","JUP",{"v":2.28747150137879e-07,"d":"2.29E-07"},-2.84189453465496,0.00931595643651526,"down"]
["ENSG00000167755","KLK6",{"v":6.87655609747451e-09,"d":"6.88E-09"},-5.3150752741447,0.000280054623625747,"down"]
["ENSG00000111057","KRT18",{"v":2.60155909967107e-11,"d":"2.60E-11"},-1.8458572333156,{"v":1.05951095893204E-6,"d":"1.06E-06"},"down"]
["ENSG00000171345","KRT19",{"v":7.18012477055284e-10,"d":"7.18E-10"},-2.18721601336198,{"v":2.92417761405535e-05,"d":"2.92E-05"},"down"]
["ENSG00000135480","KRT7",{"v":3.07479497529524E-7,"d":"3.07E-07"},-0.948281214175617,0.0125224100163874,"down"]
["ENSG00000170421","KRT8",{"v":8.29022642466514e-07,"d":"8.29E-07"},-1.02522436721484,0.0337627761370913,"down"]
["ENSG00000157992","KRTCAP3",{"v":3.64265618802544e-11,"d":"3.64E-11"},-7.07735641230334,{"v":1.48350815913524e-06,"d":"1.48E-06"},"down"]
["ENSG00000053747","LAMA3",{"v":5.41529364071406e-11,"d":"5.42E-11"},-6.39658995327971,{"v":2.20543248811721e-06,"d":"2.21E-06"},"down"]
["ENSG00000196878","LAMB3",{"v":4.04756788607109e-12,"d":"4.05E-12"},-3.06985232009656,{"v":1.64841249728131e-07,"d":"1.65E-07"},"down"]
["ENSG00000058085","LAMC2",{"v":3.93853449606788E-7,"d":"3.94E-07"},-2.46176354211054,0.016040075588686,"down"]
["ENSG00000148346","LCN2",{"v":1.82770175026122e-13,"d":"1.83E-13"},-4.14532128352998,{"v":7.44349814811385e-09,"d":"7.44E-09"},"down"]
["ENSG00000261780","LINC02582",{"v":1.00682673072465E-8,"d":"1.01E-08"},-3.05741786879429,0.000410040254354922,"down"]
["ENSG00000183742","MACC1",{"v":9.25454557651962E-10,"d":"9.25E-10"},-28.7140605894923,{"v":3.76900623149338e-05,"d":"3.77E-05"},"down"]
["ENSG00000147676","MAL2",{"v":4.38801722019411e-13,"d":"4.39E-13"},-4.33069062065924,{"v":1.78706389309625e-08,"d":"1.79E-08"},"down"]
["ENSG00000135525","MAP7",{"v":6.90169453054697e-10,"d":"6.90E-10"},-4.21544538487603,{"v":2.81078411451056e-05,"d":"2.81E-05"},"down"]
["ENSG00000156711","MAPK13",{"v":6.02575111791715e-07,"d":"6.03E-07"},-2.30492949190364,0.0245404740028294,"down"]
["ENSG00000140832","MARVELD3",{"v":1.20779236659633E-6,"d":"1.21E-06"},-28.5679859391666,0.049188551922002,"down"]
["ENSG00000230937","MIR205HG",{"v":8.88206527042669e-10,"d":"8.88E-10"},-6.26961236729875,{"v":3.61730990203397e-05,"d":"3.62E-05"},"down"]
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{"sheet":"Supplementray Table 7","index":6,"n_rows":1881,"n_cols":6,"rows_kept":1881,"merged":[[0,0,0,5]]}
["Supplementary Table 7: Differential gene expression  analysis result ( Claudin-low vs Basal-like cancer cells,  HDQP1 cell line, the GSE202771 dataset)\t\t\t\t\t"]
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{"sheet":"Supplementary Table 8","index":7,"n_rows":52,"n_cols":2,"rows_kept":52,"merged":[[0,0,0,1]]}
["Supplementary Table 8: Accession IDs of the scRNA-seq data from  Triple-Negative Breast Cancer (TNBC) patients."]
["Patient ID","Dataset ID"]
["CID4465","GSE176078"]
["CID4495","GSE176078"]
["CID44971","GSE176078"]
["CID44991","GSE176078"]
["CID4513","GSE176078"]
["CID4515","GSE176078"]
["CID4526","GSE176078"]
["TNBC_0126","GSE161529"]
["TNBC_0135","GSE161529"]
["TNBC_0106","GSE161529"]
["TNBC_0114","GSE161529"]
["TNBC_4031","GSE161529"]
["TNBC_0131","GSE161529"]
["TNBC_0554","GSE161529"]
["TNBC_0177","GSE161529"]
["TNBC1","GSE148673"]
["TNBC2","GSE148673"]
["TNBC3","GSE148673"]
["TNBC4","GSE148673"]
["TNBC5","GSE148673"]
["sc5rJUQ033","E-MTAB-8107, E-MTAB-6149 and E-MTAB-6653"]
["sc5rJUQ039","E-MTAB-8107, E-MTAB-6149 and E-MTAB-6653"]
["sc5rJUQ042","E-MTAB-8107, E-MTAB-6149 and E-MTAB-6653"]
["sc5rJUQ045","E-MTAB-8107, E-MTAB-6149 and E-MTAB-6653"]
["sc5rJUQ053","E-MTAB-8107, E-MTAB-6149 and E-MTAB-6653"]
["PT039","GSE118390"]
["PT084","GSE118390"]
["PT089","GSE118390"]
["PT126","GSE118390"]
["SU4","GSE138536"]
["SU58","GSE138536"]
["BIOKEY_1","EGAD00001006608"]
["BIOKEY_2","EGAD00001006608"]
["BIOKEY_8","EGAD00001006608"]
["BIOKEY_9","EGAD00001006608"]
["BIOKEY_10","EGAD00001006608"]
["BIOKEY_11","EGAD00001006608"]
["BIOKEY_14","EGAD00001006608"]
["BIOKEY_15","EGAD00001006608"]
["BIOKEY_16","EGAD00001006608"]
["BIOKEY_19","EGAD00001006608"]
["BIOKEY_25","EGAD00001006608"]
["BIOKEY_26","EGAD00001006608"]
["BIOKEY_31","EGAD00001006608"]
["BIOKEY_33","EGAD00001006608"]
["BIOKEY_34","EGAD00001006608"]
["BIOKEY_35","EGAD00001006608"]
["BIOKEY_36","EGAD00001006608"]
["BIOKEY_39","EGAD00001006608"]
["BIOKEY_41","EGAD00001006608"]

{"sheet":"Supplementary Table 9","index":8,"n_rows":596,"n_cols":6,"rows_kept":596,"merged":[[0,0,0,5]]}
["Supplementary Table 9: Differential gene expression analysis result  (Claudin-low vs Basal-like cancer cells, in TNBC patient 0554)."]
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["ENSG00000197256","KANK2",{"v":6.56344082785427e-12,"d":"6.56E-12"},1.52464450799295,{"v":2.20124678484576E-7,"d":"2.20E-07"},"up"]
["ENSG00000197381","ADARB1",{"v":1.02912913991964e-06,"d":"1.03E-06"},1.30604606029441,0.034514933094625,"up"]
["ENSG00000197956","S100A6",{"v":1.57732904868113E-8,"d":"1.58E-08"},0.653271926341853,0.000529004616346676,"up"]
["ENSG00000198363","ASPH",{"v":6.78501932841319e-12,"d":"6.79E-12"},1.37852559254142,{"v":2.27555978236322e-07,"d":"2.28E-07"},"up"]
["ENSG00000198467","TPM2",{"v":7.34236840868423e-11,"d":"7.34E-11"},0.956375923839351,{"v":2.46248351690452e-06,"d":"2.46E-06"},"up"]
["ENSG00000198483","ANKRD35",{"v":1.26011177467085e-11,"d":"1.26E-11"},1.57987310675459,{"v":4.22616286989109E-7,"d":"4.23E-07"},"up"]
["ENSG00000198959","TGM2",{"v":2.84013513217117e-18,"d":"2.84E-18"},3.12618765056304,{"v":9.52524520627566e-14,"d":"9.53E-14"},"up"]
["ENSG00000204103","MAFB",{"v":3.8802460999555e-25,"d":"3.88E-25"},3.49796585774337,{"v":1.30135693700308E-20,"d":"1.30E-20"},"up"]
["ENSG00000204262","COL5A2",{"v":9.12246723539102e-89,"d":"9.12E-89"},5.37001017425222,{"v":3.05949306140544e-84,"d":"3.06E-84"},"up"]
["ENSG00000206560","ANKRD28",{"v":3.99401916787556e-16,"d":"3.99E-16"},1.53377272578231,{"v":1.33951414852211E-11,"d":"1.34E-11"},"up"]
["ENSG00000211445","GPX3",{"v":2.68435515366278E-14,"d":"2.68E-14"},1.97559296720724,{"v":9.00279031435424e-10,"d":"9.00E-10"},"up"]
["ENSG00000212747","RTL8B",{"v":2.78922568800928E-7,"d":"2.79E-07"},1.31313203724589,0.00935450511244551,"up"]
["ENSG00000213190","MLLT11",{"v":7.15529245418847e-33,"d":"7.16E-33"},2.68366064188483,{"v":2.39974198328573e-28,"d":"2.40E-28"},"up"]
["ENSG00000213626","LBH",{"v":1.67856982270278E-7,"d":"1.68E-07"},1.21574048734345,0.0056295874713806,"up"]
["ENSG00000213853","EMP2",{"v":1.67251437624364e-23,"d":"1.67E-23"},1.34725083301866,{"v":5.60927871504591e-19,"d":"5.61E-19"},"up"]
["ENSG00000240137","ERICH6-AS1",{"v":1.47458196287859E-7,"d":"1.47E-07"},1.9281041352989,0.00494545298710223,"up"]
["ENSG00000244405","ETV5",{"v":1.99763051800176e-12,"d":"2.00E-12"},2.13066546493311,{"v":6.6996532312743e-08,"d":"6.70E-08"},"up"]
["ENSG00000255302","EID1",{"v":1.43807646072126E-6,"d":"1.44E-06"},0.761559820648156,0.0482302083396697,"up"]
["ENSG00000271601","LIX1L",{"v":1.04581190678037e-11,"d":"1.05E-11"},1.8556667280909,{"v":3.50744397296001E-7,"d":"3.51E-07"},"up"]
["ENSG00000271614","ATP2B1-AS1",{"v":1.48896845976616E-15,"d":"1.49E-15"},2.31426480591202,{"v":4.99370242036376e-11,"d":"4.99E-11"},"up"]

{"sheet":"Supplementary Table 10","index":9,"n_rows":57,"n_cols":9,"rows_kept":57,"merged":[[0,0,0,8]]}
["Supplementary Table 10:  common DE  genes derived from three Claudin-low vs Basal-like DE analyses"]
["ENSEMBL","SYMBOL","log2FC_HDQP1_GSE173634","padj_HDQP1_GSE173634","log2FC_HDQP1_GSE202771","padj_HDQP1_GSE202771","log2FC_TNBC0554","padj_TNBC0554","direction"]
["ENSG00000035115","SH3YL1",-2.64247883352248,{"v":3.14576399547684e-06,"d":"3.15E-06"},-3.3709667082949,{"v":3.72649939622569E-87,"d":"3.73E-87"},-2.21706037819058,{"v":4.29703032684108e-22,"d":"4.30E-22"},"down"]
["ENSG00000058085","LAMC2",-2.46176354211054,0.016040075588686,-3.28222324833979,0.000917309746329507,-2.25578743400891,{"v":1.58498210405156E-13,"d":"1.58E-13"},"down"]
["ENSG00000089356","FXYD3",-3.87928561621229,1.34862670898687E-3,-5.45472686917057,{"v":1.4327380784769e-101,"d":"1.43E-101"},-3.14474559740009,{"v":2.98390589984143e-42,"d":"2.98E-42"},"down"]
["ENSG00000095066","HOOK2",-1.8578139934714,0.0274856526947079,-1.03727888985749,{"v":2.62791147469467e-20,"d":"2.63E-20"},-0.726152883844908,0.000252352021864527,"down"]
["ENSG00000096696","DSP",-4.67908197200472,{"v":3.39503082223819e-05,"d":"3.40E-05"},-2.284447704546,{"v":1.28137035659173e-23,"d":"1.28E-23"},-1.61568455379307,{"v":8.30998283017504e-12,"d":"8.31E-12"},"down"]
["ENSG00000101443","WFDC2",-2.93461888520578,{"v":4.03484147144638e-08,"d":"4.03E-08"},-2.05427553687485,{"v":6.411670663898e-97,"d":"6.41E-97"},-3.86410700237738,{"v":1.06626209230174e-21,"d":"1.07E-21"},"down"]
["ENSG00000111057","KRT18",-1.8458572333156,{"v":1.05951095893204E-6,"d":"1.06E-06"},-1.10558140347765,{"v":3.93815322917565e-61,"d":"3.94E-61"},-1.54471938879065,{"v":2.09100710035004e-17,"d":"2.09E-17"},"down"]
["ENSG00000111348","ARHGDIB",-2.81491794171333,{"v":3.24762262416561e-05,"d":"3.25E-05"},-3.80677715015105,{"v":1.9933688871073e-75,"d":"1.99E-75"},-1.39001242848246,{"v":2.43078864028309e-06,"d":"2.43E-06"},"down"]
["ENSG00000112378","PERP",-1.5135618674786,{"v":9.2612851642386e-08,"d":"9.26E-08"},-1.40476559186277,{"v":1.13562807862367e-58,"d":"1.14E-58"},-1.2538329986835,{"v":2.8619751183282e-15,"d":"2.86E-15"},"down"]
["ENSG00000119888","EPCAM",-3.78169596604214,{"v":1.67933638906402e-08,"d":"1.68E-08"},-4.29681218962417,{"v":1.43809170240732e-98,"d":"1.44E-98"},-1.87646994280814,{"v":1.03070544967458E-26,"d":"1.03E-26"},"down"]
["ENSG00000124107","SLPI",-2.61269765742648,{"v":1.68749274756337e-09,"d":"1.69E-09"},-4.23281745512499,{"v":8.25053910663061e-130,"d":"8.25E-130"},-0.939828788291616,{"v":1.13073282535959E-5,"d":"1.13E-05"},"down"]
["ENSG00000129354","AP1M2",-4.97545661224751,{"v":1.14643699766764e-06,"d":"1.15E-06"},-4.96369083381368,{"v":5.70947795939198e-60,"d":"5.71E-60"},-2.215682609064,{"v":7.14877333528227e-12,"d":"7.15E-12"},"down"]
["ENSG00000132698","RAB25",-4.92937009502208,{"v":1.61538161997296e-08,"d":"1.62E-08"},-6.50425565675778,{"v":9.07484985321057e-101,"d":"9.07E-101"},-2.04591715526993,{"v":7.20388119695645e-24,"d":"7.20E-24"},"down"]
["ENSG00000134709","HOOK1",-2.87140605506011,0.0321545913950796,-3.30326925163796,{"v":5.09527555663841e-06,"d":"5.10E-06"},-2.40384487756719,{"v":1.03768011420647E-13,"d":"1.04E-13"},"down"]
["ENSG00000135480","KRT7",-0.948281214175617,0.0125224100163874,-1.40145804166918,{"v":6.15461182975903e-69,"d":"6.15E-69"},-2.77202293628131,{"v":3.339764456071e-30,"d":"3.34E-30"},"down"]
["ENSG00000135525","MAP7",-4.21544538487603,{"v":2.81078411451056e-05,"d":"2.81E-05"},-3.19850455963438,{"v":2.51205130912319e-06,"d":"2.51E-06"},-1.89602678797332,{"v":1.71073128345612E-7,"d":"1.71E-07"},"down"]
["ENSG00000140832","MARVELD3",-28.5679859391666,0.049188551922002,-28.0701412383286,{"v":7.72764351738551e-12,"d":"7.73E-12"},-3.42050722779812,0.0280714538719485,"down"]
["ENSG00000147676","MAL2",-4.33069062065924,{"v":1.78706389309625e-08,"d":"1.79E-08"},-4.17849643174249,{"v":2.32979232149741e-121,"d":"2.33E-121"},-3.22798631635196,{"v":9.27572946617063E-46,"d":"9.28E-46"},"down"]
["ENSG00000149573","MPZL2",-6.06008201924132,0.0201518623931686,-4.40857149622692,0.0142457556880989,-3.55418285043813,{"v":6.51432180746362e-10,"d":"6.51E-10"},"down"]
["ENSG00000157992","KRTCAP3",-7.07735641230334,{"v":1.48350815913524e-06,"d":"1.48E-06"},-6.42761756588696,{"v":2.11443400761943e-47,"d":"2.11E-47"},-3.68823846317819,{"v":6.2060021766029e-14,"d":"6.21E-14"},"down"]
["ENSG00000160213","CSTB",-1.44889776249407,{"v":7.82453718857979E-7,"d":"7.82E-07"},-1.0502813159269,{"v":1.28338087111055E-46,"d":"1.28E-46"},-1.22283349030555,{"v":9.86768682765344e-23,"d":"9.87E-23"},"down"]
["ENSG00000163435","ELF3",-6.70324455843505,0.00117514915949761,-4.70192698184256,{"v":5.39018106322299e-78,"d":"5.39E-78"},-3.83471279893983,{"v":1.51285579274372e-59,"d":"1.51E-59"},"down"]
["ENSG00000163993","S100P",-3.71816597974061,{"v":4.7183771278568e-08,"d":"4.72E-08"},-4.81083284342803,{"v":1.51207446113857e-110,"d":"1.51E-110"},-1.5210902621473,1.34591248419791E-3,"down"]
["ENSG00000166145","SPINT1",-4.69281508545307,0.000236455437477798,-2.15923592528636,{"v":1.2015415195653E-17,"d":"1.20E-17"},-2.49040120906194,{"v":5.98654792285258e-18,"d":"5.99E-18"},"down"]
["ENSG00000167642","SPINT2",-1.40059158862812,{"v":7.72495056230136e-06,"d":"7.72E-06"},-1.72706642940893,{"v":1.34830057260478e-68,"d":"1.35E-68"},-2.35291602350365,{"v":1.75108913696196e-50,"d":"1.75E-50"},"down"]
["ENSG00000170421","KRT8",-1.02522436721484,0.0337627761370913,-0.915580786987793,{"v":5.16183669286047e-37,"d":"5.16E-37"},-1.76251191077609,{"v":5.30304691608735e-22,"d":"5.30E-22"},"down"]
["ENSG00000171345","KRT19",-2.18721601336198,{"v":2.92417761405535e-05,"d":"2.92E-05"},-1.71654395194283,{"v":1.39457844057099E-83,"d":"1.39E-83"},-2.83637600817604,{"v":2.53361530282558e-42,"d":"2.53E-42"},"down"]
["ENSG00000173801","JUP",-2.84189453465496,0.00931595643651526,-1.64653298164698,{"v":7.83995640849687e-12,"d":"7.84E-12"},-2.90421064174644,{"v":5.34093003902116e-14,"d":"5.34E-14"},"down"]
["ENSG00000178372","CALML5",-3.19175410371153,{"v":6.60800668548243e-06,"d":"6.61E-06"},-4.32540697762564,{"v":1.0900951159506E-41,"d":"1.09E-41"},-4.85092934758099,{"v":5.22679134197799e-15,"d":"5.23E-15"},"down"]
["ENSG00000181885","CLDN7",-4.18184532044516,{"v":2.48604848859706e-11,"d":"2.49E-11"},-4.30395273112038,{"v":4.14909782817547e-118,"d":"4.15E-118"},-3.50276979909308,{"v":7.09434533090603e-25,"d":"7.09E-25"},"down"]
["ENSG00000183742","MACC1",-28.7140605894923,{"v":3.76900623149338e-05,"d":"3.77E-05"},-6.86520437338175,{"v":1.12622346657667E-14,"d":"1.13E-14"},-5.72346159466444,0.0446652406063636,"down"]
["ENSG00000184292","TACSTD2",-2.67782644513488,{"v":1.66233763028481E-6,"d":"1.66E-06"},-3.10118693204351,{"v":2.80504043088276E-120,"d":"2.81E-120"},-3.76275271863969,{"v":8.95163427972959e-53,"d":"8.95E-53"},"down"]
["ENSG00000188910","GJB3",-5.53673739652115,0.0210413661756211,-4.94330154619685,{"v":2.83338402696749e-06,"d":"2.83E-06"},-4.02424057728835,{"v":3.04372296546418E-5,"d":"3.04E-05"},"down"]
["ENSG00000189143","CLDN4",-3.19362762496923,2.35011765309108E-4,-4.11168417578209,{"v":9.93558349935939E-74,"d":"9.94E-74"},-4.6240266332566,{"v":3.0686595364518E-71,"d":"3.07E-71"},"down"]
["ENSG00000189334","S100A14",-5.41864091782195,{"v":2.2885689453784E-10,"d":"2.29E-10"},-7.24454146984561,{"v":8.10695383582695e-48,"d":"8.11E-48"},-3.23094416698813,{"v":5.13446921566687e-49,"d":"5.13E-49"},"down"]
["ENSG00000196878","LAMB3",-3.06985232009656,{"v":1.64841249728131e-07,"d":"1.65E-07"},-1.93678019203552,0.000420783020751325,-1.85391715968751,{"v":1.59984407860092E-6,"d":"1.60E-06"},"down"]
["ENSG00000215845","TSTD1",-1.04942579597366,0.00103913812616501,-1.16818991612631,{"v":7.43901705565e-56,"d":"7.44E-56"},-0.708279330295905,{"v":6.16431405484057e-10,"d":"6.16E-10"},"down"]
["ENSG00000026025","VIM",2.47996497805596,{"v":7.45251660237801e-10,"d":"7.45E-10"},4.69969824937769,{"v":9.27086481626182e-195,"d":"9.27E-195"},3.06859207477136,{"v":2.09093977973339E-48,"d":"2.09E-48"},"up"]
["ENSG00000026508","CD44",1.01223974017831,0.000498243218001604,1.25704987692745,{"v":1.86019632276697e-23,"d":"1.86E-23"},0.723603440362878,{"v":8.44114408504666E-10,"d":"8.44E-10"},"up"]
["ENSG00000099250","NRP1",1.83040978099468,0.00425397172241103,3.18226394472355,{"v":3.43902755152559e-66,"d":"3.44E-66"},1.9747123735518,{"v":1.21645303607624E-13,"d":"1.22E-13"},"up"]
["ENSG00000100097","LGALS1",0.884633362579284,0.0180887624449097,0.667678181090826,{"v":2.45162677184636e-25,"d":"2.45E-25"},0.875098493799906,{"v":9.39951751252673e-09,"d":"9.40E-09"},"up"]
["ENSG00000120708","TGFBI",1.33292410568959,0.00830610067094112,3.77599827527601,{"v":4.52294879261628e-179,"d":"4.52E-179"},3.92538458609788,{"v":8.56256287644394E-44,"d":"8.56E-44"},"up"]
["ENSG00000127920","GNG11",1.64524725517913,{"v":1.27064722451379E-6,"d":"1.27E-06"},2.03730377215221,{"v":1.28834148749507e-62,"d":"1.29E-62"},4.25423496451407,{"v":4.18511474848913e-24,"d":"4.19E-24"},"up"]
["ENSG00000132429","POPDC3",2.45087484457711,0.000443622597479126,3.46426717898728,{"v":4.1521316056211e-51,"d":"4.15E-51"},1.04779018927889,0.000184760629867134,"up"]
["ENSG00000134013","LOXL2",2.36036073276039,0.002556788252655,3.89965922191431,{"v":9.4829047992941e-163,"d":"9.48E-163"},2.41494750135,{"v":3.1142252900663e-12,"d":"3.11E-12"},"up"]
["ENSG00000134874","DZIP1",2.10505344469958,0.0346488576202928,2.19897843437612,{"v":2.79478288921585e-32,"d":"2.79E-32"},1.33146307509917,{"v":2.85058647804458E-7,"d":"2.85E-07"},"up"]
["ENSG00000142227","EMP3",2.29209949716132,{"v":4.16268123391767e-05,"d":"4.16E-05"},3.97225451567051,{"v":3.00033864943105E-205,"d":"3.00E-205"},1.84070970978412,{"v":2.23104167876875e-19,"d":"2.23E-19"},"up"]
["ENSG00000148926","ADM",2.34667729455068,0.000402055106215868,2.79183520678416,{"v":5.51875174661406e-27,"d":"5.52E-27"},1.16992063120386,1.37370809364675E-3,"up"]
["ENSG00000163453","IGFBP7",1.54711517952583,1.9223616477498E-3,5.72003110305987,0,0.83158455798687,0.0313616281094658,"up"]
["ENSG00000164111","ANXA5",1.293532875607,{"v":3.64840414074737e-06,"d":"3.65E-06"},0.739869900194245,{"v":4.68905034835287E-12,"d":"4.69E-12"},0.757089659212159,{"v":1.45843727825602e-10,"d":"1.46E-10"},"up"]
["ENSG00000166130","IKBIP",1.78845364835111,0.0245108109689485,3.13830909886767,{"v":1.5137558669208e-103,"d":"1.51E-103"},2.15793615518752,{"v":4.87010437360832e-08,"d":"4.87E-08"},"up"]
["ENSG00000169604","ANTXR1",1.88721695810071,0.0243129067619789,2.28306984958131,{"v":2.87256995628075e-35,"d":"2.87E-35"},1.55539358553303,0.00494951944942709,"up"]
["ENSG00000198467","TPM2",1.41181726915711,{"v":3.33686139571372e-06,"d":"3.34E-06"},0.647667609715582,{"v":6.33472001189764e-14,"d":"6.33E-14"},0.956375923839351,{"v":2.46248351690452e-06,"d":"2.46E-06"},"up"]
["ENSG00000204262","COL5A2",2.43453485434275,{"v":5.50119905510708E-5,"d":"5.50E-05"},2.1418465514108,{"v":1.01409205229763E-56,"d":"1.01E-56"},5.37001017425222,{"v":3.05949306140544e-84,"d":"3.06E-84"},"up"]
["ENSG00000255302","EID1",0.777304609468482,0.0213186962356835,1.24296500888672,{"v":4.3536144538528e-33,"d":"4.35E-33"},0.761559820648156,0.0482302083396697,"up"]

{"sheet":"Supplementary Table 11","index":10,"n_rows":291,"n_cols":6,"rows_kept":291,"merged":[[0,0,0,5]]}
["Supplementary Table 11: Differential gene expression analysis result  (sh-ELF3 vs control)."]
["ENSEMBL","SYMBOL","p-value","log2FC","p-adjust","direction"]
["ENSG00000013364","MVP",{"v":1.70231942322018E-12,"d":"1.70E-12"},-1.01594332572614,{"v":4.33563733899948e-08,"d":"4.34E-08"},"down"]
["ENSG00000013588","GPRC5A",{"v":7.32321713371287e-10,"d":"7.32E-10"},-1.14704013178899,{"v":1.86515017178533E-5,"d":"1.87E-05"},"down"]
["ENSG00000062038","CDH3",{"v":9.11118724134832e-09,"d":"9.11E-09"},-0.911826456989284,0.0002320528278499,"down"]
["ENSG00000062716","VMP1",{"v":1.31472063603933e-06,"d":"1.31E-06"},-0.696048554501611,0.0334846198792857,"down"]
["ENSG00000067082","KLF6",{"v":3.1157215151206E-7,"d":"3.12E-07"},-1.49993105046564,0.00793543112686067,"down"]
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